Query 010835
Match_columns 499
No_of_seqs 256 out of 1631
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 15:15:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010835.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010835hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9z_H Sigma factor SIGA; heli 100.0 4.6E-48 1.6E-52 409.2 33.1 301 191-497 94-438 (438)
2 2a6h_F RNA polymerase sigma fa 100.0 1.9E-48 6.5E-53 411.8 27.2 297 191-496 79-422 (423)
3 3iyd_F RNA polymerase sigma fa 100.0 4.5E-40 1.5E-44 362.4 -6.8 267 194-497 341-612 (613)
4 3ugo_A RNA polymerase sigma fa 100.0 1E-31 3.6E-36 264.8 12.2 198 190-387 6-245 (245)
5 1rp3_A RNA polymerase sigma fa 100.0 1.4E-29 4.8E-34 242.4 23.4 222 253-489 10-237 (239)
6 1l0o_C Sigma factor; bergerat 100.0 2.8E-31 9.4E-36 254.1 6.0 239 200-484 4-243 (243)
7 1or7_A Sigma-24, RNA polymeras 99.9 2.3E-23 8E-28 193.9 18.7 182 210-489 9-190 (194)
8 2q1z_A RPOE, ECF SIGE; ECF sig 99.9 7.4E-24 2.5E-28 195.9 8.4 157 255-487 27-183 (184)
9 3mzy_A RNA polymerase sigma-H 99.9 6E-21 2E-25 171.8 14.7 155 279-491 1-160 (164)
10 2lfw_A PHYR sigma-like domain; 99.7 1.6E-20 5.4E-25 171.5 -4.6 141 257-489 3-143 (157)
11 1sig_A Sigma70, RNA polymerase 99.6 2.5E-16 8.5E-21 161.3 10.1 109 192-328 230-338 (339)
12 3n0r_A Response regulator; sig 99.6 1.6E-16 5.4E-21 159.0 7.5 142 252-487 18-159 (286)
13 3t72_q RNA polymerase sigma fa 99.5 3.2E-13 1.1E-17 115.2 10.9 79 419-498 3-82 (99)
14 3hug_A RNA polymerase sigma fa 99.3 7.1E-12 2.4E-16 104.5 10.6 74 414-491 16-89 (92)
15 2p7v_B Sigma-70, RNA polymeras 99.2 5.1E-12 1.7E-16 99.5 2.3 63 435-497 4-67 (68)
16 1tty_A Sigma-A, RNA polymerase 99.1 4.6E-11 1.6E-15 98.8 6.2 71 427-498 10-81 (87)
17 2o7g_A Probable RNA polymerase 99.1 1E-10 3.6E-15 100.0 8.5 87 209-329 9-95 (112)
18 1ku3_A Sigma factor SIGA; heli 99.1 4E-11 1.4E-15 95.7 2.9 66 430-496 5-72 (73)
19 2o8x_A Probable RNA polymerase 99.0 4.3E-10 1.5E-14 87.9 6.9 65 424-492 4-68 (70)
20 1h3l_A RNA polymerase sigma fa 99.0 4.6E-10 1.6E-14 91.6 6.3 77 250-328 7-83 (87)
21 1xsv_A Hypothetical UPF0122 pr 98.9 8.5E-09 2.9E-13 89.6 10.5 71 420-493 9-79 (113)
22 3clo_A Transcriptional regulat 98.8 1.3E-11 4.3E-16 121.4 -12.7 153 246-487 87-244 (258)
23 1s7o_A Hypothetical UPF0122 pr 98.7 1.9E-08 6.5E-13 87.5 7.7 64 426-492 12-75 (113)
24 2rnj_A Response regulator prot 98.5 3.4E-08 1.2E-12 81.9 3.3 60 422-486 16-75 (91)
25 3c57_A Two component transcrip 98.5 1.2E-07 4.2E-12 79.5 6.5 58 424-486 16-73 (95)
26 1x3u_A Transcriptional regulat 98.5 1.5E-07 5E-12 75.3 6.3 55 427-486 8-62 (79)
27 1jhg_A Trp operon repressor; c 98.5 9.1E-08 3.1E-12 81.6 5.1 67 422-489 21-91 (101)
28 1je8_A Nitrate/nitrite respons 98.4 2.1E-07 7.3E-12 75.9 4.7 57 429-490 15-71 (82)
29 1fse_A GERE; helix-turn-helix 98.2 1.4E-06 4.7E-11 68.4 5.2 51 432-487 8-58 (74)
30 3ulq_B Transcriptional regulat 98.1 3.1E-06 1.1E-10 70.4 6.3 47 435-485 28-74 (90)
31 1p4w_A RCSB; solution structur 98.0 7.1E-06 2.4E-10 69.5 6.2 47 435-485 33-79 (99)
32 2jpc_A SSRB; DNA binding prote 98.0 3.8E-06 1.3E-10 63.7 4.0 44 439-486 1-44 (61)
33 2q0o_A Probable transcriptiona 97.6 8.9E-05 3E-09 71.3 7.0 46 436-485 175-220 (236)
34 1l3l_A Transcriptional activat 97.6 9.1E-05 3.1E-09 71.1 6.8 46 436-485 173-218 (234)
35 3szt_A QCSR, quorum-sensing co 97.4 0.00016 5.5E-09 69.8 6.3 46 435-484 174-219 (237)
36 3qp6_A CVIR transcriptional re 97.3 0.00025 8.7E-09 69.8 6.3 46 436-485 197-242 (265)
37 1tc3_C Protein (TC3 transposas 97.2 0.00048 1.6E-08 48.7 4.9 40 436-478 5-44 (51)
38 2w7n_A TRFB transcriptional re 97.1 0.0011 3.7E-08 56.4 7.1 46 436-484 18-63 (101)
39 2x48_A CAG38821; archeal virus 96.8 0.00076 2.6E-08 49.8 3.2 39 437-479 17-55 (55)
40 1yio_A Response regulatory pro 96.6 0.0061 2.1E-07 55.8 8.6 50 430-484 137-186 (208)
41 1a04_A Nitrate/nitrite respons 96.4 0.0053 1.8E-07 56.6 7.0 46 435-484 153-198 (215)
42 3c3w_A Two component transcrip 96.2 0.0069 2.4E-07 56.7 6.4 46 435-484 148-193 (225)
43 3klo_A Transcriptional regulat 95.5 0.0096 3.3E-07 55.6 4.4 46 435-484 158-203 (225)
44 3p7n_A Sensor histidine kinase 95.0 0.062 2.1E-06 50.6 8.3 57 424-485 187-243 (258)
45 3iyd_F RNA polymerase sigma fa 94.3 0.0057 2E-07 67.2 -1.1 59 189-268 94-152 (613)
46 1p2f_A Response regulator; DRR 93.9 0.051 1.8E-06 50.1 4.8 49 436-484 145-196 (220)
47 1jko_C HIN recombinase, DNA-in 93.9 0.034 1.2E-06 39.4 2.8 34 441-478 11-44 (52)
48 3kor_A Possible Trp repressor; 93.7 0.068 2.3E-06 46.5 4.7 39 436-480 61-99 (119)
49 2gwr_A DNA-binding response re 93.6 0.072 2.5E-06 50.0 5.4 49 436-484 153-206 (238)
50 2oqr_A Sensory transduction pr 93.4 0.062 2.1E-06 49.7 4.5 49 436-484 156-209 (230)
51 1kgs_A DRRD, DNA binding respo 92.9 0.082 2.8E-06 48.7 4.4 50 436-485 151-205 (225)
52 1zx4_A P1 PARB, plasmid partit 92.7 0.13 4.3E-06 48.5 5.4 36 441-480 14-49 (192)
53 1ys7_A Transcriptional regulat 92.6 0.079 2.7E-06 49.0 3.8 46 436-485 159-213 (233)
54 1u78_A TC3 transposase, transp 92.3 0.15 5E-06 43.9 5.0 40 436-478 6-45 (141)
55 1pdn_C Protein (PRD paired); p 92.2 0.2 6.8E-06 41.9 5.7 41 436-479 17-57 (128)
56 3ugo_A RNA polymerase sigma fa 91.5 0.035 1.2E-06 54.0 0.0 51 429-484 192-244 (245)
57 3q9s_A DNA-binding response re 91.0 0.13 4.6E-06 48.9 3.6 49 436-484 182-235 (249)
58 2hqr_A Putative transcriptiona 91.0 0.07 2.4E-06 49.2 1.5 46 436-485 143-197 (223)
59 1k78_A Paired box protein PAX5 90.8 0.32 1.1E-05 42.6 5.7 42 436-480 32-73 (149)
60 2w48_A Sorbitol operon regulat 90.5 0.26 8.8E-06 49.2 5.3 36 443-481 12-47 (315)
61 1qgp_A Protein (double strande 90.5 0.23 7.8E-06 39.6 3.9 40 439-478 14-54 (77)
62 2elh_A CG11849-PA, LD40883P; s 90.3 0.45 1.5E-05 38.4 5.6 40 436-479 22-62 (87)
63 1oyi_A Double-stranded RNA-bin 90.1 0.24 8.2E-06 40.3 3.8 25 454-478 29-53 (82)
64 1qbj_A Protein (double-strande 89.9 0.35 1.2E-05 39.1 4.6 39 439-477 10-49 (81)
65 3frw_A Putative Trp repressor 89.6 0.57 2E-05 40.0 5.8 40 435-474 35-77 (107)
66 2heo_A Z-DNA binding protein 1 89.5 0.4 1.4E-05 36.9 4.5 44 437-485 8-51 (67)
67 2l0k_A Stage III sporulation p 89.1 0.61 2.1E-05 38.7 5.6 38 439-479 7-44 (93)
68 3r0j_A Possible two component 89.0 0.57 1.9E-05 44.1 6.2 50 436-485 176-230 (250)
69 2jn6_A Protein CGL2762, transp 88.7 0.5 1.7E-05 38.5 4.8 40 437-479 6-47 (97)
70 2cfx_A HTH-type transcriptiona 88.2 0.76 2.6E-05 40.2 6.0 41 436-478 2-42 (144)
71 2lkp_A Transcriptional regulat 88.0 1.7 5.8E-05 36.4 7.9 39 437-478 30-68 (119)
72 3r0a_A Putative transcriptiona 87.9 0.91 3.1E-05 38.9 6.2 41 435-477 22-64 (123)
73 3i4p_A Transcriptional regulat 87.6 0.83 2.9E-05 40.9 6.0 40 437-478 1-40 (162)
74 3k2z_A LEXA repressor; winged 86.9 0.7 2.4E-05 42.7 5.3 41 436-476 2-45 (196)
75 1u78_A TC3 transposase, transp 86.9 3.3 0.00011 35.1 9.2 77 358-478 23-102 (141)
76 2k27_A Paired box protein PAX- 86.7 0.34 1.2E-05 43.1 2.8 40 436-478 25-64 (159)
77 2dbb_A Putative HTH-type trans 86.6 1.2 4.1E-05 39.1 6.4 42 435-478 5-46 (151)
78 2cyy_A Putative HTH-type trans 86.5 1.3 4.5E-05 38.9 6.6 41 436-478 4-44 (151)
79 2o3f_A Putative HTH-type trans 86.5 1.6 5.3E-05 37.0 6.8 62 426-488 9-76 (111)
80 2d1h_A ST1889, 109AA long hypo 86.5 1.2 4.2E-05 35.8 6.0 42 435-477 17-58 (109)
81 2p5v_A Transcriptional regulat 86.4 1 3.5E-05 40.1 5.9 41 436-478 7-47 (162)
82 2pn6_A ST1022, 150AA long hypo 86.4 1.1 3.9E-05 39.1 6.1 40 437-478 1-40 (150)
83 2w25_A Probable transcriptiona 86.3 1.1 3.6E-05 39.4 5.9 42 435-478 3-44 (150)
84 1r1u_A CZRA, repressor protein 86.3 1.9 6.6E-05 35.5 7.2 37 438-477 25-61 (106)
85 2glo_A Brinker CG9653-PA; prot 86.2 0.79 2.7E-05 34.0 4.3 46 437-486 6-55 (59)
86 2cg4_A Regulatory protein ASNC 86.1 1.4 4.7E-05 38.7 6.5 41 436-478 5-45 (152)
87 3tgn_A ADC operon repressor AD 86.0 1.4 4.6E-05 37.7 6.3 40 436-478 35-74 (146)
88 1i1g_A Transcriptional regulat 85.9 1.2 4.1E-05 38.4 5.9 39 437-477 2-40 (141)
89 1sfx_A Conserved hypothetical 85.8 1.1 3.7E-05 36.1 5.2 41 436-478 17-57 (109)
90 3pqk_A Biofilm growth-associat 85.6 2.3 7.8E-05 34.7 7.2 37 438-477 22-58 (102)
91 2zkz_A Transcriptional repress 85.5 1.1 3.8E-05 36.8 5.2 45 428-478 19-64 (99)
92 3jth_A Transcription activator 85.4 1.8 6.1E-05 35.0 6.4 37 438-477 22-58 (98)
93 3nqo_A MARR-family transcripti 85.0 2.3 7.8E-05 38.7 7.7 53 425-478 28-80 (189)
94 1uxc_A FRUR (1-57), fructose r 84.8 0.75 2.6E-05 35.4 3.6 24 456-479 1-24 (65)
95 2e1c_A Putative HTH-type trans 84.6 1.4 4.7E-05 40.1 5.9 41 436-478 24-64 (171)
96 3cuo_A Uncharacterized HTH-typ 84.2 2.5 8.6E-05 33.7 6.7 38 438-477 23-60 (99)
97 3bro_A Transcriptional regulat 84.2 3.8 0.00013 34.5 8.2 52 427-478 21-73 (141)
98 3iwf_A Transcription regulator 83.7 2.3 7.9E-05 35.9 6.5 62 426-488 5-72 (107)
99 2ia0_A Putative HTH-type trans 83.7 1.6 5.5E-05 39.6 5.9 42 435-478 13-54 (171)
100 3ech_A MEXR, multidrug resista 83.5 2.5 8.4E-05 36.0 6.8 52 425-478 20-74 (142)
101 1r1t_A Transcriptional repress 83.0 4.1 0.00014 34.7 8.0 44 428-477 38-81 (122)
102 1q1h_A TFE, transcription fact 82.9 0.91 3.1E-05 37.6 3.6 46 435-485 14-59 (110)
103 3eco_A MEPR; mutlidrug efflux 82.8 3.7 0.00013 34.6 7.6 53 426-478 17-70 (139)
104 3o9x_A Uncharacterized HTH-typ 82.5 3.1 0.0001 35.6 7.0 47 427-478 60-107 (133)
105 2kko_A Possible transcriptiona 82.5 2.6 8.8E-05 35.0 6.3 37 438-477 24-60 (108)
106 2gxg_A 146AA long hypothetical 82.4 2.1 7E-05 36.4 5.8 40 436-478 34-73 (146)
107 2x4h_A Hypothetical protein SS 82.4 1.8 6.2E-05 37.0 5.5 43 436-478 10-54 (139)
108 1uly_A Hypothetical protein PH 82.2 2 7E-05 39.8 6.1 39 437-478 18-56 (192)
109 2dk5_A DNA-directed RNA polyme 81.8 0.88 3E-05 37.5 3.0 43 435-477 16-58 (91)
110 1ku9_A Hypothetical protein MJ 81.2 1.6 5.5E-05 37.1 4.7 42 436-478 23-64 (152)
111 2a6c_A Helix-turn-helix motif; 81.1 1.8 6.1E-05 34.0 4.6 26 453-478 29-54 (83)
112 2fu4_A Ferric uptake regulatio 81.1 2.9 0.0001 32.7 5.9 40 436-476 14-59 (83)
113 1y0u_A Arsenical resistance op 80.9 5.8 0.0002 31.9 7.8 36 438-477 30-65 (96)
114 3bdd_A Regulatory protein MARR 80.9 4.4 0.00015 34.1 7.4 41 436-478 28-68 (142)
115 2oqg_A Possible transcriptiona 80.9 3.9 0.00013 33.6 6.9 38 438-478 20-57 (114)
116 2fa5_A Transcriptional regulat 80.7 6.3 0.00022 34.1 8.6 41 436-478 46-86 (162)
117 1hlv_A CENP-B, major centromer 80.7 2 7E-05 36.5 5.1 45 436-483 7-53 (131)
118 2htj_A P fimbrial regulatory p 80.7 3.8 0.00013 32.1 6.4 24 454-477 13-36 (81)
119 2xi8_A Putative transcription 80.5 1.5 5.2E-05 32.0 3.8 26 453-478 12-37 (66)
120 3qq6_A HTH-type transcriptiona 80.5 1.7 5.7E-05 33.9 4.2 26 453-478 21-46 (78)
121 1zug_A Phage 434 CRO protein; 80.4 1.7 5.9E-05 32.3 4.1 26 453-478 14-39 (71)
122 3bpv_A Transcriptional regulat 80.3 2.8 9.5E-05 35.2 5.9 41 436-478 26-66 (138)
123 1r69_A Repressor protein CI; g 80.3 1.8 6.1E-05 32.0 4.1 26 453-478 12-37 (69)
124 4hbl_A Transcriptional regulat 79.9 5.4 0.00018 34.3 7.7 41 436-478 38-78 (149)
125 3hsr_A HTH-type transcriptiona 79.6 3.9 0.00013 34.8 6.6 41 436-478 33-73 (140)
126 2nnn_A Probable transcriptiona 79.4 3.8 0.00013 34.4 6.4 41 436-478 35-75 (140)
127 1y7y_A C.AHDI; helix-turn-heli 79.1 2.1 7E-05 32.1 4.2 26 453-478 24-49 (74)
128 2qww_A Transcriptional regulat 79.1 5.3 0.00018 34.2 7.4 41 436-478 38-78 (154)
129 3t76_A VANU, transcriptional r 78.7 2 6.8E-05 34.9 4.2 26 453-478 35-60 (88)
130 3b7h_A Prophage LP1 protein 11 78.7 2.4 8.3E-05 32.1 4.5 26 453-478 18-43 (78)
131 2r1j_L Repressor protein C2; p 78.7 1.7 5.9E-05 31.9 3.5 25 454-478 17-41 (68)
132 2rdp_A Putative transcriptiona 78.6 5.8 0.0002 33.8 7.5 41 436-478 39-79 (150)
133 1jgs_A Multiple antibiotic res 78.6 6.1 0.00021 33.1 7.5 51 426-478 20-71 (138)
134 3cdh_A Transcriptional regulat 78.6 7.4 0.00025 33.4 8.2 41 436-478 40-80 (155)
135 2b5a_A C.BCLI; helix-turn-heli 78.5 2.2 7.4E-05 32.4 4.2 26 453-478 21-46 (77)
136 1on2_A Transcriptional regulat 78.5 2.2 7.6E-05 36.6 4.7 26 453-478 20-45 (142)
137 3nrv_A Putative transcriptiona 78.5 3.3 0.00011 35.3 5.9 41 436-478 37-77 (148)
138 3kz3_A Repressor protein CI; f 78.5 1.3 4.5E-05 34.4 3.0 25 454-478 24-48 (80)
139 3f6w_A XRE-family like protein 78.5 1.6 5.6E-05 33.8 3.5 26 453-478 25-50 (83)
140 2k9q_A Uncharacterized protein 78.0 1.8 6E-05 33.3 3.5 25 454-478 14-38 (77)
141 2wiu_B HTH-type transcriptiona 77.9 2.7 9.3E-05 32.7 4.7 26 453-478 23-48 (88)
142 4b8x_A SCO5413, possible MARR- 77.8 5.2 0.00018 34.7 7.0 52 427-478 22-74 (147)
143 1neq_A DNA-binding protein NER 77.8 1.9 6.5E-05 33.9 3.7 26 453-478 20-45 (74)
144 3oop_A LIN2960 protein; protei 77.7 4.2 0.00014 34.5 6.2 41 436-478 34-74 (143)
145 3eus_A DNA-binding protein; st 77.6 2.1 7.1E-05 33.9 4.0 26 453-478 25-50 (86)
146 3fmy_A HTH-type transcriptiona 77.3 1.6 5.5E-05 33.6 3.1 25 454-478 23-47 (73)
147 4ghj_A Probable transcriptiona 77.3 2.2 7.5E-05 35.6 4.1 25 453-477 47-71 (101)
148 2a61_A Transcriptional regulat 77.1 3.3 0.00011 35.1 5.4 41 436-478 30-70 (145)
149 3s8q_A R-M controller protein; 77.0 2.5 8.4E-05 32.7 4.2 26 453-478 22-47 (82)
150 3omt_A Uncharacterized protein 77.0 1.6 5.5E-05 33.1 3.0 25 454-478 20-44 (73)
151 1s3j_A YUSO protein; structura 77.0 4.8 0.00016 34.5 6.5 42 435-478 33-74 (155)
152 3f3x_A Transcriptional regulat 76.9 6.2 0.00021 33.5 7.1 40 436-478 34-73 (144)
153 2kpj_A SOS-response transcript 76.8 2.8 9.5E-05 33.6 4.5 26 453-478 20-45 (94)
154 1x57_A Endothelial differentia 76.7 3.5 0.00012 32.6 5.1 26 453-478 24-49 (91)
155 1sfu_A 34L protein; protein/Z- 76.7 4.7 0.00016 32.2 5.6 25 454-478 28-52 (75)
156 1gdt_A GD resolvase, protein ( 76.6 2.3 8E-05 38.6 4.5 31 443-477 150-180 (183)
157 1adr_A P22 C2 repressor; trans 76.2 2.1 7.3E-05 32.2 3.5 25 454-478 17-41 (76)
158 2r0q_C Putative transposon TN5 76.2 2.1 7.3E-05 39.8 4.2 32 442-477 166-197 (209)
159 1p6r_A Penicillinase repressor 76.1 3.2 0.00011 32.4 4.6 42 435-478 5-50 (82)
160 2pex_A Transcriptional regulat 76.1 3.2 0.00011 35.7 5.1 41 436-478 44-84 (153)
161 3kp7_A Transcriptional regulat 76.0 5 0.00017 34.4 6.3 40 436-478 35-74 (151)
162 2ef8_A C.ECOT38IS, putative tr 76.0 2.7 9.3E-05 32.3 4.2 25 454-478 22-46 (84)
163 2jsc_A Transcriptional regulat 76.0 3.6 0.00012 34.7 5.2 37 438-477 20-56 (118)
164 3cjn_A Transcriptional regulat 75.9 3.2 0.00011 36.1 5.1 41 436-478 49-89 (162)
165 2p5k_A Arginine repressor; DNA 75.7 4.1 0.00014 30.0 4.9 25 453-477 17-46 (64)
166 3bj6_A Transcriptional regulat 75.7 3.4 0.00012 35.4 5.1 41 436-478 37-77 (152)
167 3bs3_A Putative DNA-binding pr 75.7 2.5 8.7E-05 31.8 3.8 26 453-478 21-46 (76)
168 3s2w_A Transcriptional regulat 75.6 4.3 0.00015 35.3 5.8 41 436-478 47-87 (159)
169 2qvo_A Uncharacterized protein 75.5 1.9 6.5E-05 34.8 3.2 42 436-478 9-53 (95)
170 2fbh_A Transcriptional regulat 75.5 3.5 0.00012 34.8 5.1 42 436-478 34-75 (146)
171 2ewt_A BLDD, putative DNA-bind 75.4 3.4 0.00011 30.8 4.4 26 453-478 19-46 (71)
172 2nyx_A Probable transcriptiona 75.4 5.6 0.00019 35.0 6.6 41 436-478 42-82 (168)
173 2fbi_A Probable transcriptiona 75.0 2.9 9.8E-05 35.3 4.4 41 436-478 33-73 (142)
174 3f6o_A Probable transcriptiona 74.9 4.4 0.00015 34.0 5.5 44 428-477 10-53 (118)
175 2jt1_A PEFI protein; solution 74.7 2.2 7.5E-05 34.0 3.3 24 454-477 23-46 (77)
176 3g3z_A NMB1585, transcriptiona 74.6 4.1 0.00014 34.7 5.4 41 436-478 28-68 (145)
177 2ppx_A AGR_C_3184P, uncharacte 74.3 2.8 9.7E-05 34.0 4.0 25 453-477 41-65 (99)
178 1jhf_A LEXA repressor; LEXA SO 74.1 2.3 8E-05 39.0 3.8 42 436-477 3-48 (202)
179 3k0l_A Repressor protein; heli 73.9 8 0.00027 33.7 7.2 41 436-478 43-83 (162)
180 3fm5_A Transcriptional regulat 73.7 9.9 0.00034 32.5 7.6 42 436-478 36-77 (150)
181 2eth_A Transcriptional regulat 73.7 3.7 0.00013 35.5 4.8 41 436-478 41-81 (154)
182 2da4_A Hypothetical protein DK 73.4 7 0.00024 30.7 6.0 48 436-486 14-70 (80)
183 1ub9_A Hypothetical protein PH 73.4 2.6 9E-05 33.5 3.6 39 438-478 15-53 (100)
184 2hin_A GP39, repressor protein 73.2 2.9 9.8E-05 32.9 3.5 22 457-478 12-33 (71)
185 3g5g_A Regulatory protein; tra 73.0 3.4 0.00011 33.9 4.2 26 453-478 39-64 (99)
186 3bd1_A CRO protein; transcript 73.0 3 0.0001 32.2 3.7 25 454-479 11-35 (79)
187 1lj9_A Transcriptional regulat 72.9 3.1 0.0001 35.3 4.0 41 436-478 26-66 (144)
188 1xmk_A Double-stranded RNA-spe 72.7 3 0.0001 33.5 3.6 38 439-478 11-49 (79)
189 2l8n_A Transcriptional repress 72.6 1.5 5.3E-05 33.8 1.9 23 455-477 9-31 (67)
190 2o38_A Hypothetical protein; a 72.3 3.4 0.00012 35.3 4.2 26 453-478 51-76 (120)
191 2rn7_A IS629 ORFA; helix, all 72.2 1.7 5.8E-05 35.9 2.2 24 456-479 31-54 (108)
192 3sqn_A Conserved domain protei 72.1 5.8 0.0002 41.9 6.8 105 355-483 30-136 (485)
193 2ao9_A Phage protein; structur 72.1 7.9 0.00027 35.0 6.7 44 435-478 22-71 (155)
194 1pdn_C Protein (PRD paired); p 71.9 9.5 0.00032 31.3 6.9 24 358-381 34-57 (128)
195 2pij_A Prophage PFL 6 CRO; tra 71.8 4.2 0.00014 30.1 4.2 23 453-476 12-34 (67)
196 2ecc_A Homeobox and leucine zi 71.4 4.8 0.00016 32.1 4.5 50 436-485 9-60 (76)
197 2wte_A CSA3; antiviral protein 71.4 4.8 0.00016 38.8 5.4 41 435-477 148-188 (244)
198 1u2w_A CADC repressor, cadmium 71.0 7.1 0.00024 33.0 5.9 39 438-478 41-79 (122)
199 1lmb_3 Protein (lambda repress 70.7 2.9 9.9E-05 33.0 3.2 25 454-478 29-53 (92)
200 1xn7_A Hypothetical protein YH 70.5 6.4 0.00022 31.3 5.1 25 454-478 15-39 (78)
201 3u2r_A Regulatory protein MARR 70.4 4.8 0.00017 35.3 4.9 43 436-478 43-85 (168)
202 2wus_R RODZ, putative uncharac 70.4 5 0.00017 33.9 4.7 30 446-478 14-43 (112)
203 1j5y_A Transcriptional regulat 70.2 5 0.00017 36.6 5.1 39 438-477 20-58 (187)
204 1rzs_A Antirepressor, regulato 70.0 2.4 8.3E-05 31.7 2.4 21 456-476 11-31 (61)
205 2frh_A SARA, staphylococcal ac 69.9 3.4 0.00012 35.0 3.6 43 436-478 34-76 (127)
206 1ft9_A Carbon monoxide oxidati 69.8 4.1 0.00014 37.2 4.4 27 455-485 163-189 (222)
207 3ryp_A Catabolite gene activat 69.8 4 0.00014 36.6 4.3 27 455-485 167-193 (210)
208 2hr3_A Probable transcriptiona 69.7 3.8 0.00013 34.8 4.0 42 436-478 32-73 (147)
209 1tbx_A ORF F-93, hypothetical 69.7 3.7 0.00013 33.1 3.6 41 436-478 5-49 (99)
210 2oz6_A Virulence factor regula 69.5 4 0.00014 36.5 4.3 27 455-485 164-190 (207)
211 3b73_A PHIH1 repressor-like pr 69.5 4.1 0.00014 34.7 4.0 40 437-478 11-52 (111)
212 2ict_A Antitoxin HIGA; helix-t 69.4 4 0.00014 32.5 3.8 25 454-478 20-44 (94)
213 3vk0_A NHTF, transcriptional r 69.4 3.6 0.00012 34.2 3.7 26 453-478 32-57 (114)
214 3kxa_A NGO0477 protein, putati 69.3 3 0.0001 36.7 3.2 26 453-478 79-104 (141)
215 3a03_A T-cell leukemia homeobo 69.3 7.3 0.00025 28.4 4.9 50 436-485 3-54 (56)
216 1rr7_A Middle operon regulator 69.2 7.4 0.00025 33.9 5.7 40 438-482 80-119 (129)
217 3dv8_A Transcriptional regulat 69.1 4.4 0.00015 36.6 4.5 27 455-485 169-195 (220)
218 3bja_A Transcriptional regulat 69.1 2.7 9.2E-05 35.3 2.8 41 436-478 30-70 (139)
219 2auw_A Hypothetical protein NE 69.0 4.1 0.00014 37.4 4.1 32 444-478 95-126 (170)
220 3boq_A Transcriptional regulat 68.9 5.8 0.0002 34.3 5.0 42 436-478 44-85 (160)
221 3e97_A Transcriptional regulat 68.9 4.4 0.00015 37.0 4.5 27 455-485 175-201 (231)
222 3op9_A PLI0006 protein; struct 68.9 4.4 0.00015 33.5 4.1 25 454-478 21-45 (114)
223 2gau_A Transcriptional regulat 68.7 20 0.00068 32.6 9.0 47 435-485 149-206 (232)
224 2zcw_A TTHA1359, transcription 68.6 4.4 0.00015 36.4 4.3 27 455-485 146-172 (202)
225 3deu_A Transcriptional regulat 68.4 5.3 0.00018 35.3 4.8 42 436-478 50-91 (166)
226 2o0m_A Transcriptional regulat 68.4 1 3.6E-05 45.4 0.0 43 437-481 18-60 (345)
227 3mlf_A Transcriptional regulat 68.4 5 0.00017 33.5 4.3 26 453-478 34-59 (111)
228 1yz8_P Pituitary homeobox 2; D 68.1 14 0.00047 28.0 6.4 51 436-486 9-61 (68)
229 1g2h_A Transcriptional regulat 68.0 4.7 0.00016 30.2 3.6 22 456-477 34-55 (61)
230 1z91_A Organic hydroperoxide r 67.8 4.4 0.00015 34.4 3.9 41 436-478 37-77 (147)
231 1k78_A Paired box protein PAX5 67.7 16 0.00056 31.4 7.7 24 358-381 49-72 (149)
232 3uj3_X DNA-invertase; helix-tu 67.7 1.1 3.8E-05 41.2 0.0 35 441-479 148-182 (193)
233 1okr_A MECI, methicillin resis 67.6 5.5 0.00019 33.1 4.4 43 435-479 6-52 (123)
234 3d0s_A Transcriptional regulat 67.6 4.8 0.00016 36.7 4.4 27 455-485 177-203 (227)
235 2fmy_A COOA, carbon monoxide o 67.5 4.7 0.00016 36.6 4.3 28 454-485 166-193 (220)
236 2b0l_A GTP-sensing transcripti 67.5 5.2 0.00018 33.3 4.2 27 455-485 42-69 (102)
237 1b0n_A Protein (SINR protein); 67.5 5.2 0.00018 32.5 4.2 26 453-478 12-37 (111)
238 2bv6_A MGRA, HTH-type transcri 67.5 3.1 0.00011 35.3 2.9 41 436-478 34-74 (142)
239 2l49_A C protein; P2 bacteriop 67.4 4.5 0.00015 32.3 3.7 25 454-478 16-40 (99)
240 4ev0_A Transcription regulator 67.4 4.7 0.00016 36.3 4.3 28 454-485 162-189 (216)
241 3hyi_A Protein DUF199/WHIA; la 67.4 13 0.00043 37.1 7.6 43 435-479 242-284 (295)
242 3e6m_A MARR family transcripti 67.4 9.9 0.00034 33.0 6.3 41 436-478 50-90 (161)
243 3jw4_A Transcriptional regulat 67.2 3.8 0.00013 35.1 3.4 43 436-478 38-80 (148)
244 2da1_A Alpha-fetoprotein enhan 67.1 9.6 0.00033 29.0 5.4 50 436-485 13-64 (70)
245 3trb_A Virulence-associated pr 67.0 8.3 0.00028 32.0 5.4 25 453-477 25-49 (104)
246 3iwz_A CAP-like, catabolite ac 66.6 5 0.00017 36.5 4.3 27 455-485 187-213 (230)
247 3b02_A Transcriptional regulat 66.4 4.2 0.00014 36.3 3.7 27 455-485 139-165 (195)
248 3la7_A Global nitrogen regulat 66.4 5.2 0.00018 37.2 4.5 27 455-485 193-219 (243)
249 3qwg_A ESX-1 secretion-associa 66.3 4.2 0.00014 35.0 3.5 41 437-477 6-51 (123)
250 3ivp_A Putative transposon-rel 66.2 6.6 0.00023 33.0 4.7 26 453-478 23-48 (126)
251 3e6c_C CPRK, cyclic nucleotide 66.1 5.3 0.00018 37.2 4.5 27 455-485 177-203 (250)
252 2k02_A Ferrous iron transport 66.0 5 0.00017 32.8 3.7 25 454-478 15-39 (87)
253 2cw1_A SN4M; lambda CRO fold, 65.8 4.9 0.00017 30.9 3.4 23 455-477 13-35 (65)
254 2vn2_A DNAD, chromosome replic 65.6 6.2 0.00021 33.9 4.4 44 436-479 29-75 (128)
255 2jt1_A PEFI protein; solution 65.6 7.8 0.00027 30.8 4.7 27 355-381 22-48 (77)
256 3f6v_A Possible transcriptiona 65.4 5.8 0.0002 35.3 4.3 39 437-478 56-94 (151)
257 3dkw_A DNR protein; CRP-FNR, H 65.4 4.6 0.00016 36.7 3.8 27 455-485 178-204 (227)
258 2g9w_A Conserved hypothetical 64.9 9.1 0.00031 32.9 5.4 44 435-479 5-52 (138)
259 3cec_A Putative antidote prote 64.6 4.5 0.00015 32.9 3.2 25 454-478 30-54 (104)
260 1ahd_P Antennapedia protein mu 64.4 17 0.00058 27.6 6.3 51 436-486 8-60 (68)
261 2eby_A Putative HTH-type trans 64.4 6 0.00021 32.6 4.0 26 453-478 22-47 (113)
262 2cue_A Paired box protein PAX6 64.4 16 0.00055 28.6 6.3 54 436-489 13-68 (80)
263 2dmq_A LIM/homeobox protein LH 64.3 8.8 0.0003 30.1 4.8 53 436-488 13-67 (80)
264 1z4h_A TORI, TOR inhibition pr 64.0 5.5 0.00019 30.2 3.4 24 456-479 11-34 (66)
265 3plo_X DNA-invertase; resolvas 63.9 1.4 4.9E-05 40.5 0.0 37 442-482 149-185 (193)
266 4fx0_A Probable transcriptiona 63.9 11 0.00036 32.9 5.7 43 436-478 30-75 (148)
267 2hzt_A Putative HTH-type trans 63.8 5.9 0.0002 32.6 3.8 41 435-478 9-51 (107)
268 1jgg_A Segmentation protein EV 63.6 9.8 0.00033 28.1 4.7 50 436-485 7-58 (60)
269 1zyb_A Transcription regulator 63.5 6 0.00021 36.4 4.3 27 455-485 186-212 (232)
270 1ig7_A Homeotic protein MSX-1; 63.4 9.4 0.00032 27.9 4.5 50 436-485 6-57 (58)
271 4aik_A Transcriptional regulat 63.4 13 0.00043 32.5 6.1 42 436-478 28-69 (151)
272 1r71_A Transcriptional repress 63.2 9.3 0.00032 35.2 5.4 41 435-477 34-74 (178)
273 3e7l_A Transcriptional regulat 63.2 7.7 0.00026 29.1 4.0 36 440-477 19-54 (63)
274 4a0z_A Transcription factor FA 62.8 7.3 0.00025 36.1 4.6 36 439-477 12-48 (190)
275 3fym_A Putative uncharacterize 62.8 6.9 0.00024 33.7 4.2 27 453-479 14-40 (130)
276 3nau_A Zinc fingers and homeob 62.3 11 0.00039 29.2 4.8 49 438-486 12-62 (66)
277 3f52_A CLP gene regulator (CLG 62.3 5.3 0.00018 33.1 3.3 25 454-478 40-64 (117)
278 3k2a_A Homeobox protein MEIS2; 62.0 4.7 0.00016 30.9 2.7 53 436-488 4-61 (67)
279 4ham_A LMO2241 protein; struct 61.9 7.2 0.00024 33.6 4.2 28 454-485 36-64 (134)
280 1fx7_A Iron-dependent represso 61.7 3.9 0.00013 38.6 2.6 43 436-478 3-47 (230)
281 2hdd_A Protein (engrailed home 61.6 9.2 0.00031 28.3 4.2 50 436-485 9-60 (61)
282 2dmu_A Homeobox protein goosec 61.5 11 0.00037 28.7 4.7 51 436-486 13-65 (70)
283 3lfp_A CSP231I C protein; tran 61.2 7.4 0.00025 31.2 3.9 25 454-478 13-41 (98)
284 3fx3_A Cyclic nucleotide-bindi 61.1 4.4 0.00015 37.2 2.8 27 455-485 178-204 (237)
285 3r1f_A ESX-1 secretion-associa 60.9 6.1 0.00021 34.5 3.5 41 437-477 8-53 (135)
286 2fxa_A Protease production reg 60.9 8.9 0.0003 35.4 4.9 41 436-478 45-85 (207)
287 3oio_A Transcriptional regulat 60.8 65 0.0022 26.1 9.9 37 345-381 10-47 (113)
288 1zq3_P PRD-4, homeotic bicoid 60.7 18 0.00063 27.4 5.9 53 436-488 8-62 (68)
289 2h1k_A IPF-1, pancreatic and d 60.6 13 0.00044 27.7 4.9 51 436-486 9-61 (63)
290 2e1o_A Homeobox protein PRH; D 60.4 11 0.00039 28.7 4.7 51 436-486 13-65 (70)
291 3kcc_A Catabolite gene activat 60.1 7.5 0.00026 36.7 4.3 27 455-485 217-243 (260)
292 3a02_A Homeobox protein arista 60.1 8.4 0.00029 28.5 3.7 51 436-486 5-57 (60)
293 2h8r_A Hepatocyte nuclear fact 60.1 7.6 0.00026 37.1 4.3 25 454-478 43-67 (221)
294 1nk2_P Homeobox protein VND; h 60.0 14 0.00047 28.8 5.2 54 436-489 15-70 (77)
295 1ic8_A Hepatocyte nuclear fact 59.8 12 0.00039 35.1 5.4 50 423-477 14-65 (194)
296 2l1p_A DNA-binding protein SAT 59.7 5.6 0.00019 32.3 2.7 25 455-479 32-56 (83)
297 1puf_B PRE-B-cell leukemia tra 59.4 16 0.00055 28.0 5.4 55 436-490 7-66 (73)
298 1z7u_A Hypothetical protein EF 59.3 9.2 0.00031 31.7 4.3 45 430-478 13-59 (112)
299 1b72_B Protein (PBX1); homeodo 59.1 14 0.00048 29.3 5.2 55 436-490 7-66 (87)
300 3lsg_A Two-component response 59.1 43 0.0015 26.7 8.3 25 455-479 19-43 (103)
301 1j9i_A GPNU1 DBD;, terminase s 58.9 4.5 0.00015 30.8 2.0 24 456-479 3-26 (68)
302 3oou_A LIN2118 protein; protei 58.9 16 0.00054 29.8 5.6 27 453-479 19-45 (108)
303 2k40_A Homeobox expressed in E 58.8 16 0.00056 27.5 5.3 50 436-485 7-58 (67)
304 1sd4_A Penicillinase repressor 58.6 9.9 0.00034 31.6 4.4 43 435-479 6-52 (126)
305 3mn2_A Probable ARAC family tr 58.1 16 0.00054 29.7 5.5 27 453-479 16-42 (108)
306 3rkx_A Biotin-[acetyl-COA-carb 58.0 8.1 0.00028 38.7 4.3 42 438-479 2-43 (323)
307 2bnm_A Epoxidase; oxidoreducta 57.8 8.7 0.0003 34.7 4.2 26 453-478 21-46 (198)
308 2jvl_A TRMBF1; coactivator, he 57.8 5.8 0.0002 32.8 2.7 25 454-478 48-72 (107)
309 1y9q_A Transcriptional regulat 57.6 8.6 0.00029 34.7 4.1 26 453-478 22-47 (192)
310 2qq9_A Diphtheria toxin repres 57.4 4.1 0.00014 38.4 1.9 43 436-478 3-47 (226)
311 2v79_A DNA replication protein 57.4 12 0.00042 32.7 4.9 46 436-481 29-77 (135)
312 2p5t_A Putative transcriptiona 57.3 2.2 7.5E-05 37.8 0.0 25 453-477 12-36 (158)
313 2dmn_A Homeobox protein TGIF2L 57.1 18 0.00061 28.7 5.4 53 436-488 13-70 (83)
314 2pg4_A Uncharacterized protein 56.9 12 0.0004 29.9 4.4 25 454-478 29-54 (95)
315 1uhs_A HOP, homeodomain only p 56.8 35 0.0012 26.0 7.0 52 436-487 7-61 (72)
316 1fjl_A Paired protein; DNA-bin 56.7 18 0.00062 28.4 5.4 52 436-487 24-77 (81)
317 2bgc_A PRFA; bacterial infecti 56.6 7.2 0.00025 36.0 3.5 27 455-485 169-196 (238)
318 3mky_B Protein SOPB; partition 56.6 18 0.0006 33.8 6.0 44 435-479 22-66 (189)
319 1bia_A BIRA bifunctional prote 56.5 15 0.0005 36.6 5.9 41 437-479 3-43 (321)
320 1k61_A Mating-type protein alp 56.4 15 0.00052 26.9 4.6 50 436-485 4-58 (60)
321 3oio_A Transcriptional regulat 56.3 31 0.001 28.2 7.0 27 453-479 21-47 (113)
322 1stz_A Heat-inducible transcri 56.2 13 0.00045 37.5 5.5 38 437-477 15-60 (338)
323 1ftt_A TTF-1 HD, thyroid trans 56.1 15 0.00053 27.8 4.7 51 436-486 8-60 (68)
324 3rkq_A Homeobox protein NKX-2. 56.0 15 0.00052 26.5 4.5 48 436-483 8-57 (58)
325 1x2n_A Homeobox protein pknox1 55.5 21 0.00072 27.3 5.5 52 436-487 13-69 (73)
326 2kfs_A Conserved hypothetical 55.2 6.3 0.00021 35.4 2.6 23 456-478 32-54 (148)
327 3hrs_A Metalloregulator SCAR; 55.2 11 0.00038 35.1 4.5 26 453-478 18-43 (214)
328 2fbk_A Transcriptional regulat 55.2 10 0.00035 33.7 4.1 43 436-478 66-109 (181)
329 1akh_A Protein (mating-type pr 55.0 11 0.00037 27.8 3.6 47 436-482 11-59 (61)
330 3bdn_A Lambda repressor; repre 55.0 7.2 0.00025 36.3 3.2 26 453-478 28-53 (236)
331 1vz0_A PARB, chromosome partit 54.3 24 0.00081 33.5 6.7 41 435-477 116-156 (230)
332 2hwv_A DNA-binding response re 54.3 28 0.00097 29.3 6.6 49 436-484 43-96 (121)
333 1b72_A Protein (homeobox prote 53.9 19 0.00064 29.4 5.2 53 435-487 39-93 (97)
334 1puf_A HOX-1.7, homeobox prote 53.7 21 0.00071 27.8 5.2 52 437-488 20-73 (77)
335 2dms_A Homeobox protein OTX2; 53.3 13 0.00045 29.1 4.0 51 436-486 13-65 (80)
336 2k27_A Paired box protein PAX- 53.3 27 0.00093 30.4 6.6 24 358-381 42-65 (159)
337 2f2e_A PA1607; transcription f 53.2 17 0.00058 31.8 5.1 26 453-478 35-60 (146)
338 2yu3_A DNA-directed RNA polyme 53.1 16 0.00056 30.2 4.6 45 435-483 33-77 (95)
339 1j1v_A Chromosomal replication 53.1 31 0.0011 28.2 6.4 42 439-483 33-75 (94)
340 2k9l_A RNA polymerase sigma fa 52.8 27 0.00093 27.3 5.8 55 422-484 15-73 (76)
341 1ais_B TFB TFIIB, protein (tra 52.8 1.3E+02 0.0044 27.0 16.5 176 263-482 11-192 (200)
342 3tqn_A Transcriptional regulat 52.8 11 0.00037 31.5 3.6 28 454-485 31-59 (113)
343 2k4j_A Putative transcriptiona 52.5 22 0.00076 29.7 5.6 50 436-485 41-95 (115)
344 2qlz_A Transcription factor PF 52.2 17 0.00058 34.7 5.3 26 453-478 176-201 (232)
345 3neu_A LIN1836 protein; struct 52.1 11 0.00038 32.1 3.6 28 454-485 35-63 (125)
346 2vz4_A Tipal, HTH-type transcr 52.0 8.5 0.00029 32.0 2.8 26 455-480 1-26 (108)
347 2obp_A Putative DNA-binding pr 52.0 23 0.0008 29.3 5.4 43 436-478 13-59 (96)
348 2ovg_A Phage lambda CRO; trans 51.7 12 0.00041 28.7 3.4 20 457-476 15-34 (66)
349 2y75_A HTH-type transcriptiona 51.7 12 0.0004 31.7 3.8 29 453-485 24-52 (129)
350 2k9s_A Arabinose operon regula 51.6 91 0.0031 24.9 9.5 36 345-380 6-43 (107)
351 2hi3_A Homeodomain-only protei 51.6 25 0.00084 27.0 5.3 52 436-487 8-62 (73)
352 1ntc_A Protein (nitrogen regul 51.5 8.9 0.0003 30.9 2.8 39 437-477 48-86 (91)
353 2k9s_A Arabinose operon regula 51.2 50 0.0017 26.6 7.5 26 454-479 19-44 (107)
354 3rqi_A Response regulator prot 51.1 12 0.0004 33.1 3.8 39 437-477 140-178 (184)
355 1zs4_A Regulatory protein CII; 51.0 19 0.00065 29.2 4.6 36 455-490 24-59 (83)
356 3iuo_A ATP-dependent DNA helic 50.8 23 0.00078 30.3 5.5 37 441-481 22-58 (122)
357 2dn0_A Zinc fingers and homeob 50.6 12 0.00041 29.1 3.3 50 436-485 14-65 (76)
358 2ek5_A Predicted transcription 50.5 12 0.00042 32.2 3.7 27 454-484 26-53 (129)
359 1y6u_A XIS, excisionase from t 50.4 9 0.00031 29.9 2.5 24 455-478 16-39 (70)
360 2da3_A Alpha-fetoprotein enhan 50.2 8.6 0.00029 30.0 2.4 49 437-485 24-74 (80)
361 3mn2_A Probable ARAC family tr 50.0 97 0.0033 24.8 10.5 36 346-381 6-42 (108)
362 1umq_A Photosynthetic apparatu 49.4 13 0.00045 29.8 3.4 23 455-477 54-76 (81)
363 2dmt_A Homeobox protein BARH-l 49.4 12 0.00043 29.3 3.3 50 436-485 23-74 (80)
364 3oou_A LIN2118 protein; protei 49.2 1E+02 0.0035 24.7 11.6 28 354-381 18-45 (108)
365 3egq_A TETR family transcripti 49.2 17 0.00059 30.9 4.5 24 453-476 22-45 (170)
366 2ofy_A Putative XRE-family tra 49.1 11 0.00038 29.1 3.0 33 457-489 29-66 (86)
367 4bbr_M Transcription initiatio 48.8 36 0.0012 34.3 7.4 189 265-490 130-327 (345)
368 3c7j_A Transcriptional regulat 48.7 15 0.00052 34.7 4.4 28 453-484 47-74 (237)
369 1v4r_A Transcriptional repress 48.6 5.1 0.00017 32.7 0.9 23 454-476 33-56 (102)
370 2h09_A Transcriptional regulat 48.4 15 0.00052 31.7 4.0 25 454-478 53-77 (155)
371 2lk2_A Homeobox protein TGIF1; 48.3 21 0.00072 29.2 4.5 53 436-488 11-68 (89)
372 2r5y_A Homeotic protein sex co 48.3 22 0.00076 28.3 4.7 51 435-485 33-85 (88)
373 2p4w_A Transcriptional regulat 48.2 17 0.00057 33.9 4.5 37 438-477 14-50 (202)
374 2dmp_A Zinc fingers and homeob 48.1 18 0.00063 29.1 4.2 50 436-485 19-70 (89)
375 2da2_A Alpha-fetoprotein enhan 47.9 12 0.0004 28.5 2.8 50 436-485 13-64 (70)
376 1p4x_A Staphylococcal accessor 47.8 23 0.0008 33.9 5.6 43 436-478 155-197 (250)
377 1b8i_A Ultrabithorax, protein 47.7 19 0.00066 28.3 4.2 52 435-486 25-78 (81)
378 3rjp_A COVR; winged helix-turn 47.7 39 0.0013 26.8 6.1 49 436-484 22-75 (96)
379 3by6_A Predicted transcription 47.7 14 0.00049 31.5 3.6 27 454-484 33-60 (126)
380 2jrt_A Uncharacterized protein 47.6 24 0.00082 29.1 4.8 41 436-479 32-73 (95)
381 3sxy_A Transcriptional regulat 47.3 13 0.00045 34.3 3.7 29 453-485 33-61 (218)
382 3dn7_A Cyclic nucleotide bindi 47.0 8.1 0.00028 34.2 2.0 25 454-478 167-191 (194)
383 2k9m_A RNA polymerase sigma fa 46.8 52 0.0018 28.5 7.2 45 436-484 16-64 (130)
384 2da5_A Zinc fingers and homeob 46.4 18 0.00061 28.1 3.7 51 436-486 13-65 (75)
385 2cra_A Homeobox protein HOX-B1 45.1 11 0.00037 28.8 2.2 50 436-485 13-64 (70)
386 1xwr_A Regulatory protein CII; 45.1 23 0.00077 29.5 4.3 37 454-490 22-58 (97)
387 2pmu_A Response regulator PHOP 44.9 30 0.001 28.4 5.2 49 436-484 34-87 (110)
388 2m0c_A Homeobox protein arista 44.9 17 0.00059 27.8 3.4 50 436-485 15-66 (75)
389 1o5l_A Transcriptional regulat 44.7 4.6 0.00016 36.7 0.0 27 455-485 164-190 (213)
390 1gxq_A PHOB, phosphate regulon 44.7 36 0.0012 27.7 5.6 49 436-484 31-84 (106)
391 1bl0_A Protein (multiple antib 44.2 42 0.0014 28.2 6.1 27 453-479 25-51 (129)
392 4ich_A Transcriptional regulat 43.9 16 0.00055 35.2 3.8 24 453-476 138-161 (311)
393 3mkl_A HTH-type transcriptiona 43.8 24 0.00082 29.3 4.4 26 453-478 21-46 (120)
394 2djn_A Homeobox protein DLX-5; 43.7 12 0.00042 28.5 2.3 49 436-484 13-63 (70)
395 3hot_A Transposable element ma 43.6 20 0.00069 35.0 4.5 36 441-479 11-53 (345)
396 2vi6_A Homeobox protein nanog; 43.6 14 0.00048 27.4 2.6 49 436-484 9-59 (62)
397 1r8d_A Transcription activator 43.5 11 0.00036 31.4 2.1 24 456-479 3-26 (109)
398 4dyq_A Gene 1 protein; GP1, oc 43.4 28 0.00097 30.2 5.0 27 453-479 26-53 (140)
399 1hw1_A FADR, fatty acid metabo 43.2 18 0.00062 33.6 3.9 28 453-484 28-56 (239)
400 1bw5_A ISL-1HD, insulin gene e 43.1 13 0.00046 27.9 2.4 49 436-484 9-59 (66)
401 3nrv_A Putative transcriptiona 43.0 1.1E+02 0.0037 25.5 8.7 74 297-381 4-78 (148)
402 2ly9_A Zinc fingers and homeob 42.9 18 0.00061 27.8 3.2 50 436-485 12-63 (74)
403 3hot_A Transposable element ma 42.6 1.1E+02 0.0037 29.6 9.8 25 454-478 85-109 (345)
404 2di3_A Bacterial regulatory pr 42.4 22 0.00076 33.2 4.4 28 454-485 26-54 (239)
405 1mzb_A Ferric uptake regulatio 42.3 57 0.0019 27.9 6.7 46 436-485 15-65 (136)
406 3edp_A LIN2111 protein; APC883 42.1 21 0.00071 33.8 4.2 28 454-485 31-59 (236)
407 1opc_A OMPR, OMPRC; transcript 41.8 22 0.00075 29.2 3.8 49 436-484 31-84 (110)
408 2jml_A DNA binding domain/tran 41.8 12 0.00039 29.4 2.0 24 455-478 5-28 (81)
409 2l7z_A Homeobox protein HOX-A1 41.4 17 0.00058 28.0 2.9 51 436-486 13-65 (73)
410 2fsw_A PG_0823 protein; alpha- 41.1 22 0.00077 29.0 3.8 40 436-478 21-62 (107)
411 1mnm_C Protein (MAT alpha-2 tr 41.0 27 0.00091 27.8 4.1 50 435-484 32-86 (87)
412 3nar_A ZHX1, zinc fingers and 40.8 23 0.00077 28.8 3.7 50 436-485 31-82 (96)
413 1eto_A FIS, factor for inversi 40.8 25 0.00086 29.0 3.9 37 439-477 57-93 (98)
414 2hs5_A Putative transcriptiona 40.7 19 0.00065 33.9 3.7 27 454-484 50-76 (239)
415 3ihu_A Transcriptional regulat 40.7 19 0.00066 33.2 3.7 27 454-484 38-64 (222)
416 2k4b_A Transcriptional regulat 40.6 7.9 0.00027 32.1 0.8 43 435-479 31-77 (99)
417 1yyv_A Putative transcriptiona 40.2 20 0.00068 30.8 3.4 26 453-478 46-72 (131)
418 2kt0_A Nanog, homeobox protein 39.9 14 0.00049 29.1 2.3 50 436-485 28-79 (84)
419 1z6r_A MLC protein; transcript 39.0 42 0.0014 33.9 6.2 38 442-481 19-56 (406)
420 1le8_B Mating-type protein alp 39.0 27 0.00091 27.6 3.7 51 436-486 8-63 (83)
421 3k2z_A LEXA repressor; winged 39.0 53 0.0018 29.8 6.3 32 350-381 17-48 (196)
422 4g6q_A Putative uncharacterize 38.9 31 0.0011 31.3 4.7 38 437-477 21-59 (182)
423 3a01_A Homeodomain-containing 38.9 31 0.001 27.9 4.2 53 436-488 23-77 (93)
424 3df8_A Possible HXLR family tr 38.9 30 0.001 28.7 4.2 25 454-478 39-66 (111)
425 2fe3_A Peroxide operon regulat 38.8 65 0.0022 27.9 6.6 45 436-485 19-68 (145)
426 2oa4_A SIR5; structure, struct 38.5 28 0.00095 29.2 3.9 33 444-479 42-74 (101)
427 2e19_A Transcription factor 8; 38.5 37 0.0013 25.6 4.3 43 439-481 12-56 (64)
428 1iuf_A Centromere ABP1 protein 38.5 16 0.00054 31.9 2.5 43 436-479 11-60 (144)
429 2fjr_A Repressor protein CI; g 38.4 20 0.00067 32.1 3.2 23 457-479 22-44 (189)
430 3eco_A MEPR; mutlidrug efflux 38.0 1.6E+02 0.0056 24.0 10.2 64 311-381 7-71 (139)
431 3zq7_A KDP operon transcriptio 37.6 51 0.0017 26.4 5.4 49 436-484 28-81 (102)
432 2zcm_A Biofilm operon icaabcd 36.6 30 0.001 29.9 4.1 24 453-476 25-48 (192)
433 3fm5_A Transcriptional regulat 36.5 1.9E+02 0.0063 24.1 10.9 65 310-381 14-78 (150)
434 3pvv_A Chromosomal replication 36.1 81 0.0028 26.1 6.4 32 453-484 48-79 (101)
435 1du6_A PBX1, homeobox protein 36.0 9.7 0.00033 28.4 0.6 49 436-484 9-62 (64)
436 2jzy_A Transcriptional regulat 36.0 34 0.0012 28.3 4.1 49 436-484 28-81 (112)
437 1hsj_A Fusion protein consisti 35.9 34 0.0012 35.1 5.0 43 436-478 401-443 (487)
438 3bqz_B HTH-type transcriptiona 35.9 32 0.0011 29.5 4.1 24 453-476 20-43 (194)
439 1hkq_A REPA, replication prote 35.6 73 0.0025 27.2 6.3 57 428-485 11-77 (132)
440 3kkc_A TETR family transcripti 35.1 25 0.00085 29.9 3.2 23 453-475 30-52 (177)
441 2l9r_A Homeobox protein NKX-3. 35.0 20 0.00068 27.7 2.3 49 437-485 11-61 (69)
442 1ku3_A Sigma factor SIGA; heli 34.8 38 0.0013 25.4 3.9 26 356-381 29-54 (73)
443 2cuf_A FLJ21616 protein; homeo 34.4 45 0.0016 26.9 4.5 53 436-488 13-82 (95)
444 2heo_A Z-DNA binding protein 1 34.4 45 0.0015 25.1 4.2 31 351-381 19-49 (67)
445 3knw_A Putative transcriptiona 34.2 38 0.0013 29.5 4.4 24 453-476 32-55 (212)
446 2fq4_A Transcriptional regulat 34.2 38 0.0013 29.5 4.4 24 453-476 30-53 (192)
447 3lwf_A LIN1550 protein, putati 34.1 55 0.0019 29.2 5.4 24 454-477 43-66 (159)
448 2wv0_A YVOA, HTH-type transcri 34.1 30 0.001 32.7 3.9 28 454-485 32-60 (243)
449 3lwj_A Putative TETR-family tr 33.8 38 0.0013 29.3 4.3 24 453-476 30-53 (202)
450 3qkx_A Uncharacterized HTH-typ 33.8 32 0.0011 29.3 3.8 23 453-475 26-48 (188)
451 2eh3_A Transcriptional regulat 33.7 40 0.0014 28.9 4.4 24 453-476 20-43 (179)
452 3vpr_A Transcriptional regulat 33.6 42 0.0014 29.0 4.6 24 453-476 21-44 (190)
453 1b4a_A Arginine repressor; hel 33.5 71 0.0024 28.3 6.0 37 439-477 5-46 (149)
454 3m8j_A FOCB protein; all-alpha 33.3 99 0.0034 26.3 6.5 45 436-487 44-88 (111)
455 3dew_A Transcriptional regulat 33.1 33 0.0011 29.6 3.8 24 453-476 26-49 (206)
456 3eet_A Putative GNTR-family tr 33.1 32 0.0011 33.3 3.9 28 454-485 51-79 (272)
457 3b81_A Transcriptional regulat 33.0 34 0.0012 29.6 3.9 23 453-475 29-51 (203)
458 3bwg_A Uncharacterized HTH-typ 33.0 30 0.001 32.6 3.7 28 454-485 27-55 (239)
459 2ecb_A Zinc fingers and homeob 32.9 39 0.0013 27.4 3.8 50 436-485 17-68 (89)
460 3lsg_A Two-component response 32.8 1.8E+02 0.0061 22.9 11.9 25 357-381 19-43 (103)
461 2p7v_B Sigma-70, RNA polymeras 32.8 41 0.0014 24.9 3.7 27 356-382 24-50 (68)
462 3f8m_A GNTR-family protein tra 32.7 30 0.001 32.9 3.7 27 454-484 34-61 (248)
463 3cta_A Riboflavin kinase; stru 32.6 26 0.00088 32.7 3.1 26 453-478 25-50 (230)
464 1ylf_A RRF2 family protein; st 32.4 33 0.0011 29.9 3.6 24 454-477 29-52 (149)
465 3dpj_A Transcription regulator 32.4 51 0.0017 28.4 4.9 24 453-476 26-49 (194)
466 3deu_A Transcriptional regulat 32.2 2.4E+02 0.0083 24.2 10.7 65 310-381 28-92 (166)
467 1u8b_A ADA polyprotein; protei 32.1 77 0.0026 26.6 5.9 26 454-479 92-117 (133)
468 3t8r_A Staphylococcus aureus C 32.0 28 0.00096 30.3 3.1 24 454-477 27-50 (143)
469 1z05_A Transcriptional regulat 32.0 47 0.0016 33.9 5.2 38 442-481 42-79 (429)
470 3lhq_A Acrab operon repressor 31.8 44 0.0015 29.1 4.4 23 453-475 32-54 (220)
471 3qbm_A TETR transcriptional re 31.8 37 0.0013 29.2 3.9 23 453-475 25-47 (199)
472 2qtq_A Transcriptional regulat 31.7 48 0.0016 28.8 4.6 24 453-476 34-57 (213)
473 1mkm_A ICLR transcriptional re 31.7 48 0.0017 31.2 4.9 24 454-477 22-45 (249)
474 2p8t_A Hypothetical protein PH 31.5 40 0.0014 31.6 4.1 28 454-485 29-56 (200)
475 3on4_A Transcriptional regulat 31.5 37 0.0013 29.0 3.8 24 453-476 28-51 (191)
476 3pxp_A Helix-turn-helix domain 31.4 47 0.0016 32.7 4.9 25 454-478 24-48 (292)
477 2g7s_A Transcriptional regulat 31.4 37 0.0013 29.0 3.8 23 453-475 26-48 (194)
478 3d1n_I POU domain, class 6, tr 31.4 32 0.0011 30.3 3.4 50 436-485 99-150 (151)
479 3vp5_A Transcriptional regulat 31.3 53 0.0018 28.6 4.9 23 453-475 30-52 (189)
480 1rkt_A Protein YFIR; transcrip 31.3 37 0.0013 29.9 3.8 22 453-474 30-51 (205)
481 3onq_A Regulator of polyketide 31.1 59 0.002 31.3 5.5 40 441-483 198-237 (262)
482 2dt5_A AT-rich DNA-binding pro 31.1 87 0.003 29.2 6.5 51 332-382 2-53 (211)
483 2nx4_A Transcriptional regulat 31.0 54 0.0019 28.6 4.9 23 453-475 28-50 (194)
484 3vib_A MTRR; helix-turn-helix 30.9 44 0.0015 29.4 4.3 23 453-475 28-50 (210)
485 2o0y_A Transcriptional regulat 30.9 35 0.0012 32.5 3.8 24 454-477 37-60 (260)
486 3f1b_A TETR-like transcription 30.9 42 0.0014 28.9 4.1 23 453-475 32-54 (203)
487 1sig_A Sigma70, RNA polymerase 30.9 15 0.0005 36.7 1.1 42 205-267 1-42 (339)
488 2da7_A Zinc finger homeobox pr 30.8 56 0.0019 25.7 4.2 41 440-480 15-57 (71)
489 3rd3_A Probable transcriptiona 30.8 40 0.0014 28.9 3.9 22 453-474 28-49 (197)
490 3kz9_A SMCR; transcriptional r 30.7 55 0.0019 28.1 4.8 23 453-475 35-57 (206)
491 3crj_A Transcription regulator 30.6 38 0.0013 29.8 3.8 23 453-475 32-54 (199)
492 1dw9_A Cyanate lyase; cyanate 30.5 31 0.001 31.2 3.0 32 443-477 17-48 (156)
493 1tty_A Sigma-A, RNA polymerase 30.5 47 0.0016 26.0 3.9 27 356-382 37-63 (87)
494 2wui_A MEXZ, transcriptional r 30.4 44 0.0015 29.6 4.2 24 453-476 29-52 (210)
495 2qlz_A Transcription factor PF 30.4 14 0.00049 35.3 0.9 38 438-478 11-48 (232)
496 1fc3_A SPO0A; response regulat 30.4 33 0.0011 29.6 3.1 30 456-485 49-78 (120)
497 3cwr_A Transcriptional regulat 30.3 39 0.0013 29.2 3.8 25 453-477 35-59 (208)
498 3col_A Putative transcription 30.2 33 0.0011 29.4 3.2 23 453-475 28-50 (196)
499 2g7u_A Transcriptional regulat 30.1 37 0.0012 32.3 3.8 24 454-477 28-51 (257)
500 3bhq_A Transcriptional regulat 30.1 51 0.0017 29.1 4.6 24 453-476 30-53 (211)
No 1
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=100.00 E-value=4.6e-48 Score=409.15 Aligned_cols=301 Identities=32% Similarity=0.507 Sum_probs=262.8
Q ss_pred hhHHHHHHhhccccCCCHHHHHHHHHHHHcCCCcchhHHHH--------------HHh----hcc---------------
Q 010835 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRL--------------KER----LGS--------------- 237 (499)
Q Consensus 191 ~~~~~yl~~i~~~~~Lt~eEe~eL~~~ik~Gd~l~~~~~~~--------------~~~----~g~--------------- 237 (499)
|.++.||++|+++|+||++||++|+++++.|..+++.+... +.. +|+
T Consensus 94 d~~~~Yl~ei~~~pLLt~eEE~~La~~i~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (438)
T 1l9z_H 94 DPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTVEE 173 (438)
T ss_pred ChHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhHHHHHHhhhccchhhhhhhhhhhhhhcccccccccccccccchhhhh
Confidence 68899999999999999999999999999997544332111 000 111
Q ss_pred ------ccccChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcchhH
Q 010835 238 ------SLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTY 311 (499)
Q Consensus 238 ------~~~~~~~~l~~~l~~~~~A~e~LIe~yl~LV~sIA~ry~~~g~d~EDLiQEG~IgL~rAiekFDp~rG~kFsTY 311 (499)
..+++..+|.+++.++..|++.||..|+++|++||++|.+++.+++|||||||||||+|+++|||.+|++|+||
T Consensus 174 ~~~~~~~~~~~~~eLi~~~~~d~~A~~~Li~~nlrlVv~iA~ry~~~g~~aeDLIQEg~IgL~kAvekFDp~kG~rFsTY 253 (438)
T 1l9z_H 174 VDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTY 253 (438)
T ss_pred hhhhhhcccchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCChHHH
Confidence 12455678888888899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHH-HcCCCCCHHHHHHHhC--CCHHHHHHHHHhhccccccc
Q 010835 312 VYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLN--MSQKKVRNATEAIGKVFSLD 388 (499)
Q Consensus 312 A~~wIR~aI~~al~~~~R~vRip~~~~e~l~~irka~~~L~-~~gr~pt~eEIA~~Lg--is~e~v~~~l~~~~~~~SLD 388 (499)
|+||||+.|.++|++++|.+++|.|+.+.+++++++.+.+. .+|+.|+.++||+.+| ++.++|..++......+|+|
T Consensus 254 A~~wIR~~I~~~i~~~~R~irlp~~~~~~l~~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~~~~~~~~~~~SLd 333 (438)
T 1l9z_H 254 ATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVSLE 333 (438)
T ss_pred HHHHHHHHHHHHHHHhcchhccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhcccccccc
Confidence 99999999999999999999999999999999999988774 7899999999999999 99999999998888899999
Q ss_pred cccCCCCCCCCCCccccccccccCCCCCcchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcCC-CCCCCHHHHHHHHCC
Q 010835 389 REAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLD-KECLTWEDISKRIGL 467 (499)
Q Consensus 389 ~~~~~~~~~~e~~~l~e~i~d~~~e~~Pee~ve~~el~~~L~~~L~~~L~~rER~VI~LryGLd-~eg~SleEIAe~LgI 467 (499)
.++ +++++..+.+++.+... .+|++.+...++...|..+| ..||+++|.||.|||||+ ++++|++|||+.|||
T Consensus 334 ~~~----~~d~d~~l~d~l~d~~~-~~pee~~~~~~~~~~L~~aL-~~L~ereR~VI~LRygL~~~e~~TleEIAe~LgI 407 (438)
T 1l9z_H 334 TPI----GDEKDSFYGDFIPDENL-PSPVEAAAQSLLSEELEKAL-SKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGV 407 (438)
T ss_pred ccc----ccccchhhhhhhccccc-CCHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCc
Confidence 864 22233456677766532 46888888888899999999 999999999999999884 579999999999999
Q ss_pred CHHHHHHHHHHHHHHHH-HHHHHhhHHHhhh
Q 010835 468 SRERVRQVGLVALEKLK-HAARKKKMEAMLV 497 (499)
Q Consensus 468 S~~rVrqi~~rALkKLR-~~L~~~~l~~~l~ 497 (499)
|++||+|++++|++||| +.+....++.||.
T Consensus 408 S~erVRqi~~RAlkKLR~~~~~~~~l~~yl~ 438 (438)
T 1l9z_H 408 TRERIRQIENKALRKLKYHESRTRKLRDFLE 438 (438)
T ss_pred CHHHHHHHHHHHHHHHHHhHhhHHHHHHhhC
Confidence 99999999999999999 8888888999874
No 2
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=100.00 E-value=1.9e-48 Score=411.82 Aligned_cols=297 Identities=32% Similarity=0.529 Sum_probs=257.1
Q ss_pred hhHHHHHHhhccccCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhc----------------------------------
Q 010835 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLG---------------------------------- 236 (499)
Q Consensus 191 ~~~~~yl~~i~~~~~Lt~eEe~eL~~~ik~Gd~l~~~~~~~~~~~g---------------------------------- 236 (499)
|.++.||++|++.|+||++||++|+++++.|+.+...+ ....|
T Consensus 79 d~~~~Yl~ei~~~plLt~eEE~~La~ri~~g~~~~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (423)
T 2a6h_F 79 DPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKL---SEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKT 155 (423)
T ss_dssp HHHHHHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHHHH---HHHHCCCHHHHHHHHHHHHHCCHHHHHTTSCSSSCTTHH
T ss_pred cHHHHHHHHhcccCCCCHHHHHHHHHHHHhchhHHHHH---HHhhccchhhhhhhHhhhhhhhhhcccccchhhhhhhhh
Confidence 78999999999999999999999999999986433221 11111
Q ss_pred --------cccccChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcc
Q 010835 237 --------SSLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKI 308 (499)
Q Consensus 237 --------~~~~~~~~~l~~~l~~~~~A~e~LIe~yl~LV~sIA~ry~~~g~d~EDLiQEG~IgL~rAiekFDp~rG~kF 308 (499)
++++++..+|..++.++..|+++||..|+++|++||++|.++|.+++||+||||+|||+|+++|||.+|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~Li~~~lrlV~~iA~~y~~~~~~~eDLiQEg~igL~kav~kFd~~~g~~F 235 (423)
T 2a6h_F 156 VEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKF 235 (423)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCTTTSCHHHHHHHHHHHHHHHHHHCCTTSCCCH
T ss_pred hhhhhhhhhcccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCH
Confidence 023456678888888889999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHH-HcCCCCCHHHHHHHhC--CCHHHHHHHHHhhcccc
Q 010835 309 STYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLN--MSQKKVRNATEAIGKVF 385 (499)
Q Consensus 309 sTYA~~wIR~aI~~al~~~~R~vRip~~~~e~l~~irka~~~L~-~~gr~pt~eEIA~~Lg--is~e~v~~~l~~~~~~~ 385 (499)
+|||+||||+.|.+++++++|++++|.|+.+.+++++++.+.+. ..|+.|+.++||+.+| +++++|..++......+
T Consensus 236 stYa~~wIr~~i~~~i~~~~r~ir~p~~~~~~~~~lrr~~~~l~~~~~r~p~~~eiA~~l~~~~~~~~v~~~~~~~~~~~ 315 (423)
T 2a6h_F 236 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQEPV 315 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHCTTCCHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHHHHHccceeeccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccCCc
Confidence 99999999999999999999999999999999999999988774 7899999999999999 99999999999888999
Q ss_pred ccccccCCCCCCCCCCccccccccccCCCCCcchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcCC-CCCCCHHHHHHH
Q 010835 386 SLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLD-KECLTWEDISKR 464 (499)
Q Consensus 386 SLD~~~~~~~~~~e~~~l~e~i~d~~~e~~Pee~ve~~el~~~L~~~L~~~L~~rER~VI~LryGLd-~eg~SleEIAe~ 464 (499)
|++.++ +++++..+.+++++... .+|++.+...++...|..+| ..||+++|.||.+||||+ ++++|++|||+.
T Consensus 316 Sld~~~----~~~~~~~l~d~l~d~~~-~~pe~~~~~~~~~~~L~~aL-~~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~ 389 (423)
T 2a6h_F 316 SLETPI----GDEKDSFYGDFIPDEHL-PSPVDAATQSLLSEELEKAL-SKLSEREAMVLKLRKGLIDGREHTLEEVGAF 389 (423)
T ss_dssp ESSCBC----SSSSSCBGGGSSCCSSS-CCHHHHHHHHHHHHHHHHHH-HSSCHHHHHHHHHHHHTTCC-----CHHHHS
T ss_pred cccccc----CCCCccchhhhhccccC-CCHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHhccCCCCCCCHHHHHHH
Confidence 999874 22334467777776542 47888888888889999999 999999999999999984 579999999999
Q ss_pred HCCCHHHHHHHHHHHHHHHH-HHHHHhhHHHhh
Q 010835 465 IGLSRERVRQVGLVALEKLK-HAARKKKMEAML 496 (499)
Q Consensus 465 LgIS~~rVrqi~~rALkKLR-~~L~~~~l~~~l 496 (499)
||||++||+|++++|++||| +.+....|+.||
T Consensus 390 lgiS~erVrqi~~rAl~kLR~~~~~~~~l~~~l 422 (423)
T 2a6h_F 390 FGVTRERIRQIENKALRKLKYHESRTRKLRDFL 422 (423)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHTTSSSSCC
T ss_pred HCcCHHHHHHHHHHHHHHHHhhhhhhHHHHHhh
Confidence 99999999999999999999 788877787776
No 3
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=100.00 E-value=4.5e-40 Score=362.42 Aligned_cols=267 Identities=29% Similarity=0.555 Sum_probs=237.1
Q ss_pred HHHHHhhccccCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccChhHHHhhhhhhHHH---HHHHHHHHHHHHHH
Q 010835 194 KGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGSSLRISRPELQSILMECSLA---REKLVMSNVRLVMS 270 (499)
Q Consensus 194 ~~yl~~i~~~~~Lt~eEe~eL~~~ik~Gd~l~~~~~~~~~~~g~~~~~~~~~l~~~l~~~~~A---~e~LIe~yl~LV~s 270 (499)
+.-|..|.....++..++.+|+.+++.||. .| |+.||..|.++|++
T Consensus 341 q~kL~~ie~~~~~~~~~~~~Li~~~~~Gd~-------------------------------~A~~A~~~L~~~y~~~v~~ 389 (613)
T 3iyd_F 341 LQKLQQIEEETGLTIEQVKDINRRMSIGEA-------------------------------KARRAKKEMVEANLRLVIS 389 (613)
T ss_dssp HHHHHHHHHHHTSCTTTHHHHHHTHHHHHH-------------------------------HHHHHHTTTTTTTTHHHHH
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHhh-------------------------------hhHHHHHHHHHHHHHHHHH
Confidence 344555666666777777788888888876 55 99999999999999
Q ss_pred HHhHhhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHH
Q 010835 271 IAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLR 350 (499)
Q Consensus 271 IA~ry~~~g~d~EDLiQEG~IgL~rAiekFDp~rG~kFsTYA~~wIR~aI~~al~~~~R~vRip~~~~e~l~~irka~~~ 350 (499)
+|++|.+++.+++||+||||+|||+++++|++.+|++|+||++||||+.|.++++++.|++|+|.|+.+.+++++++...
T Consensus 390 ia~r~~~~~~~aeDlvQE~fi~l~~a~~~fd~~~g~~Fstyl~~~irn~i~~~lr~~~r~~rip~~~~~~~~k~~r~~~~ 469 (613)
T 3iyd_F 390 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQ 469 (613)
T ss_dssp GGGSSSTTSSCSTTTTHHHHHHHHHHTTSCCTTSSSCSTTTHHHHHHHHHHHHTTTSCSSSCCCSHHHHTTTTTTTTTTT
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCccccCcHHHHHHHHHHHHHHHHHHhcCcceeCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred H-HHcCCCCCHHHHHHHhCCCHHHHHHHHHhhccccccccccCCCCCCCCCCccccccccccCCCCCcchHHHHHHHHHH
Q 010835 351 L-EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEV 429 (499)
Q Consensus 351 L-~~~gr~pt~eEIA~~Lgis~e~v~~~l~~~~~~~SLD~~~~~~~~~~e~~~l~e~i~d~~~e~~Pee~ve~~el~~~L 429 (499)
+ ++.|++|+++|||+.+|++.+++..++.....++|++.++ +++++..+.+++.+.. ..+|++.+...++...|
T Consensus 470 l~~~~gr~pt~eela~~l~~~~~~v~~~~~~~~~~~sld~~~----~~~~~~~l~d~i~d~~-~~~p~~~~~~~e~~~~l 544 (613)
T 3iyd_F 470 MLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPI----GDDEDSHLGDFIEDTT-LELPLDSATTESLRAAT 544 (613)
T ss_dssp TTTTTCSCCCTTTTTTTSSCCSSHHHHHHHHSCCCCCSSCCC----SSSSSCCGGGSCCCSS-SCCHHHHHHHHTTSSSH
T ss_pred HHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhccCCcccCCCC----CCCCCccHHHHhcCCC-CCCHHHHHHHHHHHHHH
Confidence 7 4789999999999999999999999999999999999874 2334456777777654 24788888888888889
Q ss_pred HHHHHhhCCHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhHHHhhh
Q 010835 430 NKLIIVTLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAMLV 497 (499)
Q Consensus 430 ~~~L~~~L~~rER~VI~LryGLd~-eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~~~~l~~~l~ 497 (499)
..+| ..||+++|.||.|+||++. +++|++|||+.||||++||++++++|+++||+.+....++.||+
T Consensus 545 ~~aL-~~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~kLR~~~~~~~l~~~l~ 612 (613)
T 3iyd_F 545 HDVL-AGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 (613)
T ss_dssp HHHT-TSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTTTTSCSSSCSSTTCC-
T ss_pred HHHH-HcCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHHhhCcchhhHHHHHhc
Confidence 9999 9999999999999998764 89999999999999999999999999999999998888888875
No 4
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=99.97 E-value=1e-31 Score=264.81 Aligned_cols=198 Identities=32% Similarity=0.535 Sum_probs=118.4
Q ss_pred hhhHHHHHHhhccccCCCHHHHHHHHHHHHcCCCcchhH---------------------------------------HH
Q 010835 190 QNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHK---------------------------------------LR 230 (499)
Q Consensus 190 ~~~~~~yl~~i~~~~~Lt~eEe~eL~~~ik~Gd~l~~~~---------------------------------------~~ 230 (499)
.|.++.||++|+++|+||++||++|+++|+.|..+.+.. .+
T Consensus 6 ~d~~~~yl~~i~~~~llt~~~e~~la~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~~~ 85 (245)
T 3ugo_A 6 SDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTVE 85 (245)
T ss_dssp CHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTGGGCSCCCCTTCCCCCCHHHHH
T ss_pred CCcHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHhhhhhhhccchhcccccccccccchhHH
Confidence 489999999999999999999999999999986532221 11
Q ss_pred HHHhhccccccChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcchh
Q 010835 231 LKERLGSSLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKIST 310 (499)
Q Consensus 231 ~~~~~g~~~~~~~~~l~~~l~~~~~A~e~LIe~yl~LV~sIA~ry~~~g~d~EDLiQEG~IgL~rAiekFDp~rG~kFsT 310 (499)
|..+.|.+..-..+.|.+...++..|++.||+.|.++|+++|++|.+++.+++||+||||+|||+++++|||++|++|+|
T Consensus 86 ~~~~~~~~~~~~~~~L~~~~~~d~~A~~~L~~~y~~lV~~ia~r~~~~~~~aeDLvQegfi~L~~a~~~fd~~~g~~F~t 165 (245)
T 3ugo_A 86 EVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFST 165 (245)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHGGGTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHH
T ss_pred HHHHhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCcccCCcHHH
Confidence 11111111111234566677889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHH-HcCCCCCHHHHHHHhC--CCHHHHHHHHHhhcccccc
Q 010835 311 YVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLN--MSQKKVRNATEAIGKVFSL 387 (499)
Q Consensus 311 YA~~wIR~aI~~al~~~~R~vRip~~~~e~l~~irka~~~L~-~~gr~pt~eEIA~~Lg--is~e~v~~~l~~~~~~~SL 387 (499)
|++||||++|.++++++.+.+++|.++.+.++++..+.+.+. ..|+.||.+|||+.|| +++.+|...+......+||
T Consensus 166 ya~~~ir~~i~~~ir~~~r~~r~p~~l~e~i~~l~~~~~~L~~~~~~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~lsl 245 (245)
T 3ugo_A 166 YATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVSL 245 (245)
T ss_dssp HHHHHHHHHHHHHHHHHTC-------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999988888885 6899999999999999 9999999999888777765
No 5
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=99.97 E-value=1.4e-29 Score=242.40 Aligned_cols=222 Identities=22% Similarity=0.334 Sum_probs=187.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHhh---CCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHHHHHHHHHHHHHhhh
Q 010835 253 CSLAREKLVMSNVRLVMSIAQRYD---NMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSR 329 (499)
Q Consensus 253 ~~~A~e~LIe~yl~LV~sIA~ry~---~~g~d~EDLiQEG~IgL~rAiekFDp~rG~kFsTYA~~wIR~aI~~al~~~~R 329 (499)
+..|++.|+..|.++|+++|++|. +++.+++||+|||++++|+++++|+|.+|.+|.||+++||++.+.+++++..
T Consensus 10 ~~~a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~d~~r~~~- 88 (239)
T 1rp3_A 10 NQIEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLD- 88 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTSS-
T ss_pred cchHHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC-
Confidence 346999999999999999999998 7889999999999999999999999998889999999999999999999875
Q ss_pred cccccccHHHHHHHHHHHHHHHH-HcCCCCCHHHHHHHhCCCHHHHHHHHHhhc--cccccccccCCCCCCCCCCccccc
Q 010835 330 TLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKVRNATEAIG--KVFSLDREAFPSLNGLPGETHHSY 406 (499)
Q Consensus 330 ~vRip~~~~e~l~~irka~~~L~-~~gr~pt~eEIA~~Lgis~e~v~~~l~~~~--~~~SLD~~~~~~~~~~e~~~l~e~ 406 (499)
+.|.+......++..+...+. ..|+.|+.+++|+.+|++.+++..++.... ...|++.+.. ++++.. .+.
T Consensus 89 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~sl~~~~~----~~~~~~-~~~ 161 (239)
T 1rp3_A 89 --FGSRQVREKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEVFR----DFARDY-SEL 161 (239)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-TTT
T ss_pred --ccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHhccCCCcccccccc----CCCccc-ccc
Confidence 466666677778888888885 679999999999999999999998877653 3456665321 000111 222
Q ss_pred cccccCCCCCcchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010835 407 IADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 486 (499)
Q Consensus 407 i~d~~~e~~Pee~ve~~el~~~L~~~L~~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~ 486 (499)
.+. ..+|++.+...+....|..+| ..||+++|.||.++| ++|+|++|||+.||||+++|++++++|+++||+.
T Consensus 162 -~~~--~~~~~~~~~~~e~~~~l~~~l-~~L~~~~r~vl~l~~---~~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~ 234 (239)
T 1rp3_A 162 -IPS--STNVEEEVIKRELTEKVKEAV-SKLPEREKLVIQLIF---YEELPAKEVAKILETSVSRVSQLKAKALERLREM 234 (239)
T ss_dssp -GGG--SCHHHHHHHHHHHHHHHHHHH-TTSCHHHHHHHHHHH---TSCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred -cCC--CCCHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHH---hcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 222 246777788888889999999 999999999999999 8999999999999999999999999999999998
Q ss_pred HHH
Q 010835 487 ARK 489 (499)
Q Consensus 487 L~~ 489 (499)
+..
T Consensus 235 l~~ 237 (239)
T 1rp3_A 235 LSN 237 (239)
T ss_dssp HHC
T ss_pred Hhc
Confidence 753
No 6
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=99.96 E-value=2.8e-31 Score=254.08 Aligned_cols=239 Identities=31% Similarity=0.404 Sum_probs=49.3
Q ss_pred hccccCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhCCC
Q 010835 200 VVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGSSLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMG 279 (499)
Q Consensus 200 i~~~~~Lt~eEe~eL~~~ik~Gd~l~~~~~~~~~~~g~~~~~~~~~l~~~l~~~~~A~e~LIe~yl~LV~sIA~ry~~~g 279 (499)
+...+.++.+++.+|+.++++||. .|++.|+..|.++|+++|++|.++.
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~gd~-------------------------------~a~~~l~~~~~~~v~~~~~~~~~~~ 52 (243)
T 1l0o_C 4 MQGQSPIKDQEMKELIRRSQEGDQ-------------------------------EARDEIIEKNMRLVWSVVQRFLNRG 52 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCCCHHHHHHHHHHHHcCCH-------------------------------HHHHHHHHHhHHHHHHHHHHHhccC
Confidence 345667788899999999999998 9999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHH-HcCCCC
Q 010835 280 ADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTP 358 (499)
Q Consensus 280 ~d~EDLiQEG~IgL~rAiekFDp~rG~kFsTYA~~wIR~aI~~al~~~~R~vRip~~~~e~l~~irka~~~L~-~~gr~p 358 (499)
.+++|++|||++++|+++++|+|.+|.+|.+|+++++++.+.+++++.. .+++|.+......+++.+...+. ..++.|
T Consensus 53 ~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~i~~~~~~d~~r~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (243)
T 1l0o_C 53 YEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPMIIGEIQRFLRDDG-TVKVSRSLKEMGNKIRKAKDELSKTRGRAP 131 (243)
T ss_dssp -----------------------------------------------CC-CCTTHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred CCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC-CccCcHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 9999999999999999999999998889999999999999999999987 78899999988889999988885 678999
Q ss_pred CHHHHHHHhCCCHHHHHHHHHhhccccccccccCCCCCCCCCCccccccccccCCCCCcchHHHHHHHHHHHHHHHhhCC
Q 010835 359 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLG 438 (499)
Q Consensus 359 t~eEIA~~Lgis~e~v~~~l~~~~~~~SLD~~~~~~~~~~e~~~l~e~i~d~~~e~~Pee~ve~~el~~~L~~~L~~~L~ 438 (499)
+.++++..+|++.+.+...+.......|++.+... ++++..++.+.+ |++.++..+....|..+| ..||
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~l-~~L~ 200 (243)
T 1l0o_C 132 TVTEIADHLGISPEDVVLAQEAVRLPTSIHETVYE--NDGDPITLLDQI--------ADADEASWFDKIALKKAI-EELD 200 (243)
T ss_dssp BHHHHHHHHTSCHHHHHHHHHHHHC-------------------------------------------------------
T ss_pred CHHHHHHHHCCCHHHHHHHHHHhccccCccccccc--cCCcccchhhcc--------CcchhHHHHHHHHHHHHH-HhCC
Confidence 99999999999999998887777667777765210 011111222222 222334456677888999 8999
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010835 439 EREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 439 ~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR 484 (499)
+++|.||.|+| ++|+|++|||+.||||+++|++++++|+++||
T Consensus 201 ~~~r~vl~l~~---~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 201 ERERLIVYLRY---YKDQTQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp ----------------------------------------------
T ss_pred HHHHHHHHHHH---hcCCCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 99999999999 79999999999999999999999999999997
No 7
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=99.91 E-value=2.3e-23 Score=193.88 Aligned_cols=182 Identities=21% Similarity=0.237 Sum_probs=142.3
Q ss_pred HHHHHHHHHHcCCCcchhHHHHHHhhccccccChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhCCCCCHHHHHHHH
Q 010835 210 EVVRLSKKIKTGLSLDDHKLRLKERLGSSLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGG 289 (499)
Q Consensus 210 Ee~eL~~~ik~Gd~l~~~~~~~~~~~g~~~~~~~~~l~~~l~~~~~A~e~LIe~yl~LV~sIA~ry~~~g~d~EDLiQEG 289 (499)
.+.+|+.+++.||. .|++.|+..|.+.|+++|+++.+ ..+++|++||+
T Consensus 9 ~~~~l~~~~~~gd~-------------------------------~a~~~l~~~~~~~l~~~~~~~~~-~~~aeDl~Qe~ 56 (194)
T 1or7_A 9 TDQVLVERVQKGDQ-------------------------------KAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEA 56 (194)
T ss_dssp HHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHHHTTTSC-GGGHHHHHHHH
T ss_pred ChHHHHHHHHccCH-------------------------------HHHHHHHHHHHHHHHHHHHHHcC-HHhHHHHHHHH
Confidence 45678899999987 99999999999999999999999 99999999999
Q ss_pred HHHHHHhhhcCCCCCCCcchhHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCC
Q 010835 290 LIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNM 369 (499)
Q Consensus 290 ~IgL~rAiekFDp~rG~kFsTYA~~wIR~aI~~al~~~~R~vRip~~~~e~l~~irka~~~L~~~gr~pt~eEIA~~Lgi 369 (499)
|+++|+++++|++.. .|.+|++.++++.+.+++++..+.... .++..
T Consensus 57 ~l~~~~~~~~~~~~~--~~~~~l~~i~~n~~~d~~R~~~~~~~~---------------------------~~~~~---- 103 (194)
T 1or7_A 57 FIKAYRALDSFRGDS--AFYTWLYRIAVNTAKNYLVAQGRRPPS---------------------------SDVDA---- 103 (194)
T ss_dssp HHHHHHHGGGCCSSS--CHHHHHHHHHHHHHHHHHHHHTTCCTH---------------------------HHHHH----
T ss_pred HHHHHHhHHhcCCcc--chHHHHHHHHHHHHHHHHHHHhccCcc---------------------------ccccc----
Confidence 999999999999865 599999999999999999887542110 00000
Q ss_pred CHHHHHHHHHhhccccccccccCCCCCCCCCCccccccccccCCCCCcchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHh
Q 010835 370 SQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYY 449 (499)
Q Consensus 370 s~e~v~~~l~~~~~~~SLD~~~~~~~~~~e~~~l~e~i~d~~~e~~Pee~ve~~el~~~L~~~L~~~L~~rER~VI~Lry 449 (499)
. ....++.. +.+.+. .+|++.+...+....|..+| ..||+++|.||.|+|
T Consensus 104 -------~-----~~~~~~~~--------------~~~~~~---~~~~~~~~~~e~~~~l~~~l-~~L~~~~r~vl~l~~ 153 (194)
T 1or7_A 104 -------I-----EAENFESG--------------GALKEI---SNPENLMLSEELRQIVFRTI-ESLPEDLRMAITLRE 153 (194)
T ss_dssp -------H-----HHHSCCSS--------------CC-----------CEEEHHHHHHHHHHHH-HHSCHHHHHHHHHHH
T ss_pred -------c-----cccccccc--------------ccccCC---CChHHHHHHHHHHHHHHHHH-HhCCHHHHHHhHHHH
Confidence 0 00000000 001111 24555555566778888999 899999999999999
Q ss_pred cCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q 010835 450 GLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 489 (499)
Q Consensus 450 GLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~~ 489 (499)
.+|+|++|||+.||+|++||++++++|+++||+.+..
T Consensus 154 ---~~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~~ 190 (194)
T 1or7_A 154 ---LDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQP 190 (194)
T ss_dssp ---TTCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred ---HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999998743
No 8
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=99.89 E-value=7.4e-24 Score=195.94 Aligned_cols=157 Identities=16% Similarity=0.186 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHHHHHHHHHHHHHhhhccccc
Q 010835 255 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP 334 (499)
Q Consensus 255 ~A~e~LIe~yl~LV~sIA~ry~~~g~d~EDLiQEG~IgL~rAiekFDp~rG~kFsTYA~~wIR~aI~~al~~~~R~vRip 334 (499)
.|++.|+..|.+.|+.+|+++.++..+++|++||+|+++|+++++|++..| +|.+|++.++++.+.+++++..+...
T Consensus 27 ~a~~~l~~~~~~~l~~~~~~~~~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~~n~~~d~~R~~~~~~~-- 103 (184)
T 2q1z_A 27 AAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIARNRRIDGLRKDRQPEP-- 103 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHHHTSCCTTTCSSSCCCC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHHHHHHHHHHHhhccccc--
Confidence 999999999999999999999999999999999999999999999998775 79999999999877666655432100
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhhccccccccccCCCCCCCCCCccccccccccCCC
Q 010835 335 NHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVEN 414 (499)
Q Consensus 335 ~~~~e~l~~irka~~~L~~~gr~pt~eEIA~~Lgis~e~v~~~l~~~~~~~SLD~~~~~~~~~~e~~~l~e~i~d~~~e~ 414 (499)
++. . ...+. ..
T Consensus 104 ----------------------------------------------------~~~----------~-----~~~~~--~~ 114 (184)
T 2q1z_A 104 ----------------------------------------------------EDL----------F-----WGPDS--EP 114 (184)
T ss_dssp ----------------------------------------------------CCC----------C-----CCSSC--CC
T ss_pred ----------------------------------------------------ccc----------c-----ccCCC--CC
Confidence 000 0 00111 23
Q ss_pred CCcchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 010835 415 NPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 487 (499)
Q Consensus 415 ~Pee~ve~~el~~~L~~~L~~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L 487 (499)
+|++.+...+....|..+| ..||+++|.||.|+| .+|+|++|||+.||+|+++|++++++|+++||+.+
T Consensus 115 ~~~~~~~~~~~~~~l~~~l-~~L~~~~r~vl~l~~---~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 183 (184)
T 2q1z_A 115 DQADVYEMQQENARLGRAI-ARLPEAQRALIERAF---FGDLTHRELAAETGLPLGTIKSRIRLALDRLRQHM 183 (184)
T ss_dssp CHHHHHHHHHHHHHHHHHH-HTSCHHHHHHHHHHH---HSCCSSCCSTTTCCCCCHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 5667777778888899999 999999999999999 89999999999999999999999999999999875
No 9
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=99.85 E-value=6e-21 Score=171.78 Aligned_cols=155 Identities=18% Similarity=0.261 Sum_probs=109.1
Q ss_pred CCCHHHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHcCCCC
Q 010835 279 GADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTP 358 (499)
Q Consensus 279 g~d~EDLiQEG~IgL~rAiekFDp~rG~kFsTYA~~wIR~aI~~al~~~~R~vRip~~~~e~l~~irka~~~L~~~gr~p 358 (499)
|.+++|++||+++++|+++.+|++.+ .+|.+|+++++++.+.+++++..+..+.+...
T Consensus 1 g~daeDl~Qe~~~~l~~~~~~~~~~~-~~f~~~l~~i~~n~~~d~~r~~~~~~~~~~~~--------------------- 58 (164)
T 3mzy_A 1 GAEKEDLVQEGILGLLKAIKFYDETK-SSFSSFAFLCIRREMISAIRKANTQKHMVLNE--------------------- 58 (164)
T ss_dssp ----CTTHHHHHHHHHHHHHHCCTTT-SCHHHHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCccC-CChHHHhHHHHHHHHHHHHHHhhcccchhhHH---------------------
Confidence 57899999999999999999999987 68999999999999999999876533222110
Q ss_pred CHHHHHHHhCCCHHHHHHHHHhhccccccccccCCCCCCCCCCccc----cccccccCCCCCcchHHHHHHHHHHHHHHH
Q 010835 359 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHH----SYIADNRVENNPWHGVDDWALKDEVNKLII 434 (499)
Q Consensus 359 t~eEIA~~Lgis~e~v~~~l~~~~~~~SLD~~~~~~~~~~e~~~l~----e~i~d~~~e~~Pee~ve~~el~~~L~~~L~ 434 (499)
.++.+.+ .+++....+. +.+.+. ..+|++.+...+....|..+|
T Consensus 59 -------------------------~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~~~~l~~~l- 106 (164)
T 3mzy_A 59 -------------------------ALKTNAI----LEDSAYFDDEGHNINNYKSS--ESNPEEAYLLKEEIEEFKKFS- 106 (164)
T ss_dssp --------------------------------------------------------------CHHHHHHHHHHHHHHHH-
T ss_pred -------------------------Hhhhhhh----hccCCCCCcccchhhhhccc--CCCHHHHHHHHHHHHHHHHHH-
Confidence 0111110 0000011111 111221 247888888888899999999
Q ss_pred h-hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 010835 435 V-TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKK 491 (499)
Q Consensus 435 ~-~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~~~~ 491 (499)
. .||+++|.||. +| .+|+|++|||+.||||.+||++++++|+++||+.+...+
T Consensus 107 ~~~L~~~~r~v~~-~~---~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~~~ 160 (164)
T 3mzy_A 107 ENNFSKFEKEVLT-YL---IRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIKEEE 160 (164)
T ss_dssp HHHSCHHHHHHHH-HH---TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhCCHHHHHHHH-HH---HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 7 99999999999 67 799999999999999999999999999999999987653
No 10
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=99.75 E-value=1.6e-20 Score=171.53 Aligned_cols=141 Identities=11% Similarity=0.097 Sum_probs=115.4
Q ss_pred HHHHHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHHHHHHHHHHHHHhhhccccccc
Q 010835 257 REKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNH 336 (499)
Q Consensus 257 ~e~LIe~yl~LV~sIA~ry~~~g~d~EDLiQEG~IgL~rAiekFDp~rG~kFsTYA~~wIR~aI~~al~~~~R~vRip~~ 336 (499)
|+.|+..|.+.|+.+|+++.++..+++|++||+|+++|+++++|++.. .|.+|++..++|.+.+++++...
T Consensus 3 f~~l~~~~~~~l~~~~~~~~~~~~~AeDlvQe~fl~~~~~~~~~~~~~--~~~~wl~~ia~n~~~d~~R~~~~------- 73 (157)
T 2lfw_A 3 LGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRDV--DPRLGLYRMFQGIWASANADGEA------- 73 (157)
T ss_dssp GGGGTGGGGGGGTTTGGGTTSCHHHHHHHHHHHHHTTTTCGGGCCCSS--CTTHHHHHHHHHHHHHHTTTTSC-------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHcCCCC--cHHHHHHHHHHHHHHHHhhccCc-------
Confidence 667899999999999999999999999999999999999999999764 69999999999977777544210
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhhccccccccccCCCCCCCCCCccccccccccCCCCC
Q 010835 337 LHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNP 416 (499)
Q Consensus 337 ~~e~l~~irka~~~L~~~gr~pt~eEIA~~Lgis~e~v~~~l~~~~~~~SLD~~~~~~~~~~e~~~l~e~i~d~~~e~~P 416 (499)
+. .. . .. .
T Consensus 74 ---------------------------------------------------~~---------~~--~----e~------~ 81 (157)
T 2lfw_A 74 ---------------------------------------------------QT---------SQ--S----DA------E 81 (157)
T ss_dssp ---------------------------------------------------CC---------CC--C----SC------S
T ss_pred ---------------------------------------------------cc---------CC--c----ch------H
Confidence 00 00 0 00 0
Q ss_pred cchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q 010835 417 WHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 489 (499)
Q Consensus 417 ee~ve~~el~~~L~~~L~~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~~ 489 (499)
+....|..+| ..||+++|+||.|+| .+|+|++|||+.||||.+||++++.||+++||+.+..
T Consensus 82 -------~~~~~l~~~l-~~Lp~~~r~vl~L~~---~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~ 143 (157)
T 2lfw_A 82 -------GTEAVARARL-ARMTPLSRQALLLTA---MEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRA 143 (157)
T ss_dssp -------SSSSTTTTTT-TTSCTTHHHHHTTTS---SSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred -------HHHHHHHHHH-HhCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 0112355667 899999999999999 8999999999999999999999999999999987653
No 11
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=99.65 E-value=2.5e-16 Score=161.34 Aligned_cols=109 Identities=35% Similarity=0.698 Sum_probs=96.3
Q ss_pred hHHHHHHhhccccCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccChhHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 010835 192 RLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGSSLRISRPELQSILMECSLAREKLVMSNVRLVMSI 271 (499)
Q Consensus 192 ~~~~yl~~i~~~~~Lt~eEe~eL~~~ik~Gd~l~~~~~~~~~~~g~~~~~~~~~l~~~l~~~~~A~e~LIe~yl~LV~sI 271 (499)
.++..|..+.....|+..++..|+.+++.||. ....|++.||..|.++|+++
T Consensus 230 ~~q~kl~~ie~~~~l~~~~~~~l~~~~~~gd~----------------------------~~~~A~~~L~~~~~~~v~~~ 281 (339)
T 1sig_A 230 RALQKLQQIEEETGLTIEQVKDINRRMSIGEA----------------------------KARRAKKEMVEANLRLVISI 281 (339)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH----------------------------HHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhccc----------------------------cchhhhHHHHHHHHHHHHHH
Confidence 34566777777778888888888888888874 11279999999999999999
Q ss_pred HhHhhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHHHHHHHHHHHHHhh
Q 010835 272 AQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENS 328 (499)
Q Consensus 272 A~ry~~~g~d~EDLiQEG~IgL~rAiekFDp~rG~kFsTYA~~wIR~aI~~al~~~~ 328 (499)
|++|.+++.+++||+||||++||+++++|+|.+|.+|+||++|||+|.|.++++++.
T Consensus 282 a~~~~~~~~~aeDlvQe~~i~l~~a~~~f~~~~g~~f~twl~~iirn~~~~~lr~~~ 338 (339)
T 1sig_A 282 AKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA 338 (339)
T ss_dssp HTTSTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHhcCCCCHhHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999998889999999999999999998865
No 12
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.64 E-value=1.6e-16 Score=159.05 Aligned_cols=142 Identities=11% Similarity=0.028 Sum_probs=115.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHHHHHHHHHHHHHhhhcc
Q 010835 252 ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTL 331 (499)
Q Consensus 252 ~~~~A~e~LIe~yl~LV~sIA~ry~~~g~d~EDLiQEG~IgL~rAiekFDp~rG~kFsTYA~~wIR~aI~~al~~~~R~v 331 (499)
++..+|+.|+..|.+.++.+|++++++..+++|++||+|+.+|+...+|++. .+|.+|++..++|.+.++++...
T Consensus 18 g~~~~f~~l~~~~~~~l~~~a~~~~~~~~~AeD~vQe~fl~~~~~~~~~~~~--~~~~~wL~~ia~n~~~d~~r~~~--- 92 (286)
T 3n0r_A 18 GSEMHLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDAN--LSPRVALYRVFHAIWLSSGAQLE--- 92 (286)
T ss_dssp --CCCHHHHHGGGHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCSS--SCHHHHHHHHHHHHHSCTTC------
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHhCchhcCCC--cChHHHHHHHHHHHHHhhccccc---
Confidence 3347999999999999999999999999999999999999999999999975 36999999998885554432110
Q ss_pred cccccHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhhccccccccccCCCCCCCCCCcccccccccc
Q 010835 332 RLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNR 411 (499)
Q Consensus 332 Rip~~~~e~l~~irka~~~L~~~gr~pt~eEIA~~Lgis~e~v~~~l~~~~~~~SLD~~~~~~~~~~e~~~l~e~i~d~~ 411 (499)
.+ ... .
T Consensus 93 ---------------------------------------------------------~~------~~~---------~-- 98 (286)
T 3n0r_A 93 ---------------------------------------------------------VG------HDQ---------G-- 98 (286)
T ss_dssp ----------------------------------------------------------C------CCC---------C--
T ss_pred ---------------------------------------------------------cC------CCc---------c--
Confidence 00 000 0
Q ss_pred CCCCCcchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 010835 412 VENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 487 (499)
Q Consensus 412 ~e~~Pee~ve~~el~~~L~~~L~~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L 487 (499)
... ...|..+| ..||+++|.||.|+| .+|+|++|||+.+|+|.++|+..+.+|+++|+..+
T Consensus 99 --~~~---------~~~l~~al-~~Lp~~~R~v~~L~~---~eg~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l 159 (286)
T 3n0r_A 99 --LHA---------GDDAAQRL-MRIAPRSRQAFLLTA---LEGFTPTEAAQILDCDFGEVERLIGDAQAEIDAEL 159 (286)
T ss_dssp --CCT---------TSHHHHHH-HHHSCHHHHHHHHHH---TTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred --cch---------HHHHHHHH-HhCCHHHeeEEEEEe---eCCCCHHHHHHHhCcCHHHHHHHHHHHHhhhhccC
Confidence 000 12477888 899999999999999 89999999999999999999999999999998654
No 13
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=99.46 E-value=3.2e-13 Score=115.23 Aligned_cols=79 Identities=27% Similarity=0.498 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcCC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhHHHhhh
Q 010835 419 GVDDWALKDEVNKLIIVTLGEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAMLV 497 (499)
Q Consensus 419 ~ve~~el~~~L~~~L~~~L~~rER~VI~LryGLd-~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~~~~l~~~l~ 497 (499)
.+...++...|..+| +.|||+||.||.|+||++ .+++|++|||+.||+|++||++++.+|+++||+.+....++.|+.
T Consensus 3 ~~~~~el~~~l~~aL-~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~~l~~~~~ 81 (99)
T 3t72_q 3 SATTESLRAATHDVL-AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSGSS 81 (99)
T ss_pred HHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678889999999 999999999999999875 489999999999999999999999999999999999999999875
Q ss_pred c
Q 010835 498 K 498 (499)
Q Consensus 498 ~ 498 (499)
.
T Consensus 82 ~ 82 (99)
T 3t72_q 82 G 82 (99)
T ss_pred h
Confidence 3
No 14
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=99.32 E-value=7.1e-12 Score=104.49 Aligned_cols=74 Identities=14% Similarity=0.150 Sum_probs=69.5
Q ss_pred CCCcchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 010835 414 NNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKK 491 (499)
Q Consensus 414 ~~Pee~ve~~el~~~L~~~L~~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~~~~ 491 (499)
.+|++.++..+....|..+| ..||+++|.||.|+| ++|+|++|||+.||||..||++++++|+++||+.+...+
T Consensus 16 ~~~~~~~~~~~~~~~l~~~l-~~L~~~~r~vl~l~~---~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~~ 89 (92)
T 3hug_A 16 QSTPDEVNAALDRLLIADAL-AQLSAEHRAVIQRSY---YRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELG 89 (92)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-HTSCHHHHHHHHHHH---TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 47888899999999999999 999999999999999 899999999999999999999999999999999987654
No 15
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=99.18 E-value=5.1e-12 Score=99.51 Aligned_cols=63 Identities=33% Similarity=0.625 Sum_probs=58.2
Q ss_pred hhCCHHHHHHHHHHhcCC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhHHHhhh
Q 010835 435 VTLGEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAMLV 497 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd-~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~~~~l~~~l~ 497 (499)
+.|||++++||.++||++ ++|+|++|||+.||+|++||++++.+|+++||..+....+..|+.
T Consensus 4 ~~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~~~~~~~~~~ 67 (68)
T 2p7v_B 4 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 67 (68)
T ss_dssp CCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCGGGGGSCTTC
T ss_pred HcCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 689999999999999884 589999999999999999999999999999999988888777765
No 16
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=99.14 E-value=4.6e-11 Score=98.81 Aligned_cols=71 Identities=35% Similarity=0.605 Sum_probs=63.6
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHhcCC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhHHHhhhc
Q 010835 427 DEVNKLIIVTLGEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAMLVK 498 (499)
Q Consensus 427 ~~L~~~L~~~L~~rER~VI~LryGLd-~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~~~~l~~~l~~ 498 (499)
..|..+| +.||+++|.||.++|+|+ .+++|++|||+.||+|++||++++.+|+++||..+....++.|+..
T Consensus 10 ~~l~~~l-~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~~~~~~~~~~ 81 (87)
T 1tty_A 10 EELEKVL-KTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSL 81 (87)
T ss_dssp SHHHHHH-TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSHHHHHHHHH
T ss_pred HHHHHHH-HhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4577888 999999999999999653 3899999999999999999999999999999999888888887754
No 17
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=99.13 E-value=1e-10 Score=99.96 Aligned_cols=87 Identities=16% Similarity=0.153 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHcCCCcchhHHHHHHhhccccccChhHHHhhhhhhHHHHHHHHHHHHHHHHHHHhHhhCCCCCHHHHHHH
Q 010835 209 AEVVRLSKKIKTGLSLDDHKLRLKERLGSSLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQG 288 (499)
Q Consensus 209 eEe~eL~~~ik~Gd~l~~~~~~~~~~~g~~~~~~~~~l~~~l~~~~~A~e~LIe~yl~LV~sIA~ry~~~g~d~EDLiQE 288 (499)
++..+|+..++.||. .|++.|+..|.+.|+.+|.++ ++..+++|++||
T Consensus 9 ~~~~~l~~~~~~gd~-------------------------------~a~~~l~~~~~~~l~~~~~~~-~~~~~aeD~vQe 56 (112)
T 2o7g_A 9 EAVTALALSAAKGNG-------------------------------RALEAFIKATQQDVWRFVAYL-SDVGSADDLTQE 56 (112)
T ss_dssp HHHHHHHHHHHTTCH-------------------------------HHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCH-------------------------------HHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHH
Confidence 344578888999987 999999999999999999999 888999999999
Q ss_pred HHHHHHHhhhcCCCCCCCcchhHHHHHHHHHHHHHHHHhhh
Q 010835 289 GLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSR 329 (499)
Q Consensus 289 G~IgL~rAiekFDp~rG~kFsTYA~~wIR~aI~~al~~~~R 329 (499)
+|+.+|+.+.+|++. ..|.+|++..++|.+.+++++..+
T Consensus 57 ~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~R~~~~ 95 (112)
T 2o7g_A 57 TFLRAIGAIPRFSAR--SSARTWLLAIARHVVADHIRHVRS 95 (112)
T ss_dssp HHHHHHHHGGGCCCS--SCHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999974 369999999999988888877654
No 18
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=99.07 E-value=4e-11 Score=95.68 Aligned_cols=66 Identities=36% Similarity=0.575 Sum_probs=51.8
Q ss_pred HHHHHhhCCHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHHHhhHHHhh
Q 010835 430 NKLIIVTLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLK-HAARKKKMEAML 496 (499)
Q Consensus 430 ~~~L~~~L~~rER~VI~LryGLd~-eg~SleEIAe~LgIS~~rVrqi~~rALkKLR-~~L~~~~l~~~l 496 (499)
..+| +.||++++.||.++|+|++ +|+|++|||+.||+|++||++++.+|+++|| ..+....++.|+
T Consensus 5 ~~~l-~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~~~~~~~~~ 72 (73)
T 1ku3_A 5 EKAL-SKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFL 72 (73)
T ss_dssp SSST-TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHH-HhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhhHHHHHHhh
Confidence 3456 8999999999999996643 7999999999999999999999999999999 887777777765
No 19
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=99.02 E-value=4.3e-10 Score=87.89 Aligned_cols=65 Identities=22% Similarity=0.175 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhH
Q 010835 424 ALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKM 492 (499)
Q Consensus 424 el~~~L~~~L~~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~~~~l 492 (499)
+....+..+| ..|||+++.||.++| .+|+|++|||+.||+|+.+|++++++|+++||+.+....+
T Consensus 4 e~~~~l~~~l-~~L~~~~r~il~l~~---~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~~~~~ 68 (70)
T 2o8x_A 4 EDLVEVTTMI-ADLTTDQREALLLTQ---LLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDL 68 (70)
T ss_dssp HHHHHHHTTT-TSSCHHHHHHHHHHH---TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhhcccC
Confidence 4456788888 999999999999999 8999999999999999999999999999999998876543
No 20
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=98.99 E-value=4.6e-10 Score=91.58 Aligned_cols=77 Identities=18% Similarity=0.193 Sum_probs=67.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHhhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHHHHHHHHHHHHHhh
Q 010835 250 LMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENS 328 (499)
Q Consensus 250 l~~~~~A~e~LIe~yl~LV~sIA~ry~~~g~d~EDLiQEG~IgL~rAiekFDp~rG~kFsTYA~~wIR~aI~~al~~~~ 328 (499)
..++..|++.|+..|.+.|+.+|.++.++..+++|++||+++.+|+.+++|++. ..|.+|++..+++.+.+++++..
T Consensus 7 ~~g~~~af~~l~~~~~~~l~~~~~~~~~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~R~~~ 83 (87)
T 1h3l_A 7 TAERSARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREG--TNLKAWLYRILTNTFINSYRKKQ 83 (87)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCCSS--SCHHHHHHHHHHHHHHHTCC---
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHHHhc
Confidence 446679999999999999999999999999999999999999999999999975 36999999999998888776543
No 21
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=98.88 E-value=8.5e-09 Score=89.59 Aligned_cols=71 Identities=14% Similarity=0.159 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhHH
Q 010835 420 VDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKME 493 (499)
Q Consensus 420 ve~~el~~~L~~~L~~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~~~~l~ 493 (499)
++..+....+..+|...||+++|.||.++| .+|+|++|||+.||+|++||++++++|+++||..+...++-
T Consensus 9 ~e~~~~~~~l~~~l~~~L~~~~r~vl~l~~---~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~~~ 79 (113)
T 1xsv_A 9 LVKTLRMNYLFDFYQSLLTNKQRNYLELFY---LEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLELY 79 (113)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHH---TSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 445556667777774689999999999999 89999999999999999999999999999999998776553
No 22
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.77 E-value=1.3e-11 Score=121.43 Aligned_cols=153 Identities=13% Similarity=0.060 Sum_probs=107.4
Q ss_pred HHhhhh-hhHHHHHHHHHHHHHHHHHHHhHhhCCCCCHHHHH----HHHHHHHHHhhhcCCCCCCCcchhHHHHHHHHHH
Q 010835 246 LQSILM-ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV----QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGV 320 (499)
Q Consensus 246 l~~~l~-~~~~A~e~LIe~yl~LV~sIA~ry~~~g~d~EDLi----QEG~IgL~rAiekFDp~rG~kFsTYA~~wIR~aI 320 (499)
|..++. ++..+++.+...|.++++.+............|+. ||.++.+|+.+..|++.. +|.+|++..+++.+
T Consensus 87 ll~~i~p~D~~~~~~~~~~~~~fi~~l~~~~~~~~~~~~dl~~~~~qe~fl~~~~~~~~~~~~~--~~~~WL~~ia~n~~ 164 (258)
T 3clo_A 87 IYRRIHPEDLVEKRLMEYKFFQKTFSMSPGERLKYRGRCRLRMMNEKGVYQYIDNLVQIMQNTP--AGNVWLIFCLYSLS 164 (258)
T ss_dssp HHTTBCHHHHHHHHHHHHHHHHHHTTSCHHHHTTEEEEEEEEEECTTSCEEEEEEEEEEEEECT--TSCEEEEEEEEEEC
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHhcCHHhccCCeeeEEeecCCcCHHHHHHHHhHHhcCCCC--chHHHHHHHHHHHH
Confidence 333343 34578999999999999999988877778888886 999999999999998654 68888865444311
Q ss_pred HHHHHHhhhcccccccHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhhccccccccccCCCCCCCCC
Q 010835 321 SRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPG 400 (499)
Q Consensus 321 ~~al~~~~R~vRip~~~~e~l~~irka~~~L~~~gr~pt~eEIA~~Lgis~e~v~~~l~~~~~~~SLD~~~~~~~~~~e~ 400 (499)
.+. .+.. .+..
T Consensus 165 ~d~----~r~~------------------------------------------------------~~~~----------- 175 (258)
T 3clo_A 165 ADQ----RPEQ------------------------------------------------------GIYA----------- 175 (258)
T ss_dssp SCC----CCCS------------------------------------------------------SCCC-----------
T ss_pred cch----hhhh------------------------------------------------------HHHH-----------
Confidence 111 0000 0000
Q ss_pred CccccccccccCCCCCcchHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 010835 401 ETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVAL 480 (499)
Q Consensus 401 ~~l~e~i~d~~~e~~Pee~ve~~el~~~L~~~L~~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rAL 480 (499)
.+.+........ .+ .+..++ ..||+++|+||.|++ +|+|.+|||+.||+|.+||+.+++||+
T Consensus 176 -~~~~~~~~~~~~-~~-----------~~~~~~-~~L~~~erevl~L~~----~G~s~~EIA~~L~iS~~TVk~~l~ra~ 237 (258)
T 3clo_A 176 -TITQMERGEVET-LS-----------LSEEHR-NILSEREKEILRCIR----KGLSSKEIAATLYISVNTVNRHRQNIL 237 (258)
T ss_dssp -EEEETTTTEEEE-CC-----------CHHHHT-TSSCHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred -HHHhhccccccc-ch-----------hhHHHH-ccCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 000000000000 00 134566 899999999999976 999999999999999999999999999
Q ss_pred HHHHHHH
Q 010835 481 EKLKHAA 487 (499)
Q Consensus 481 kKLR~~L 487 (499)
+|||..-
T Consensus 238 ~kL~~~~ 244 (258)
T 3clo_A 238 EKLSVGN 244 (258)
T ss_dssp HHTTCSS
T ss_pred HHHcCCC
Confidence 9998643
No 23
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=98.73 E-value=1.9e-08 Score=87.48 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhH
Q 010835 426 KDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKM 492 (499)
Q Consensus 426 ~~~L~~~L~~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~~~~l 492 (499)
...+..++...|||+++.||.++| .+|+|++|||+.||+|++||++++++|+++||..+...++
T Consensus 12 ~~~l~~~l~~~L~~~~r~vl~l~y---~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~~ 75 (113)
T 1s7o_A 12 MNALFEFYAALLTDKQMNYIELYY---ADDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEMKLHM 75 (113)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHH---HTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 444555553689999999999998 7999999999999999999999999999999999877655
No 24
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=98.53 E-value=3.4e-08 Score=81.88 Aligned_cols=60 Identities=22% Similarity=0.164 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010835 422 DWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 486 (499)
Q Consensus 422 ~~el~~~L~~~L~~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~ 486 (499)
.......+..++ ..|+++|++||.+++ +|+|++|||+.||+|..||++++.++++||+..
T Consensus 16 ~~~~~~~l~~~l-~~Lt~~e~~vl~l~~----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 16 RGSHMKKRAELY-EMLTEREMEILLLIA----KGYSNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp ---------CTG-GGCCSHHHHHHHHHH----TTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred cHHHHHHHHHHH-hcCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 334456677888 899999999999954 899999999999999999999999999999853
No 25
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=98.52 E-value=1.2e-07 Score=79.46 Aligned_cols=58 Identities=24% Similarity=0.276 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010835 424 ALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 486 (499)
Q Consensus 424 el~~~L~~~L~~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~ 486 (499)
+....|..+| ..|+++|++||.+++ +|+|++|||+.||+|..||+.++.++++||+..
T Consensus 16 ~~~~~l~~~l-~~Lt~~e~~vl~l~~----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 73 (95)
T 3c57_A 16 PRGSHMQDPL-SGLTDQERTLLGLLS----EGLTNKQIADRMFLAEKTVKNYVSRLLAKLGME 73 (95)
T ss_dssp ------------CCCHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 3455677788 899999999999975 999999999999999999999999999999853
No 26
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=98.50 E-value=1.5e-07 Score=75.26 Aligned_cols=55 Identities=22% Similarity=0.309 Sum_probs=49.6
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010835 427 DEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 486 (499)
Q Consensus 427 ~~L~~~L~~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~ 486 (499)
..+..++ ..||++|+.||.++ .+|+|++|||+.||+|..||++++.++++||+..
T Consensus 8 ~~l~~~l-~~L~~~e~~vl~l~----~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~ 62 (79)
T 1x3u_A 8 NDIRARL-QTLSERERQVLSAV----VAGLPNKSIAYDLDISPRTVEVHRANVMAKMKAK 62 (79)
T ss_dssp HHHHHHH-HHHCHHHHHHHHHH----TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHH-HhCCHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 3566777 89999999999994 4999999999999999999999999999999853
No 27
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=98.50 E-value=9.1e-08 Score=81.63 Aligned_cols=67 Identities=13% Similarity=0.123 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHhcCCC---CC-CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q 010835 422 DWALKDEVNKLIIVTLGEREREIIRLYYGLDK---EC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 489 (499)
Q Consensus 422 ~~el~~~L~~~L~~~L~~rER~VI~LryGLd~---eg-~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~~ 489 (499)
.....+.+..++.+.|+++|+.+|.+||||.. +| +|++|||+.+|+|++||+++ +++|++|...+..
T Consensus 21 ~~~~~~~l~~~l~~lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~~~~k~ 91 (101)
T 1jhg_A 21 NAYQNDLHLPLLNLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAPVELRQ 91 (101)
T ss_dssp HHHHTTCHHHHHHHHSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSCHHHHH
T ss_pred hcCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHccHHHHH
Confidence 33344456666645799999999999999942 45 99999999999999999999 8999999886644
No 28
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=98.40 E-value=2.1e-07 Score=75.86 Aligned_cols=57 Identities=25% Similarity=0.360 Sum_probs=48.9
Q ss_pred HHHHHHhhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHh
Q 010835 429 VNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKK 490 (499)
Q Consensus 429 L~~~L~~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~~~ 490 (499)
+..++ ..|+++|++||.++ .+|+|++|||+.||+|..||++++.++++||+.....+
T Consensus 15 ~~~~~-~~Lt~~e~~vl~l~----~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~~~ 71 (82)
T 1je8_A 15 TERDV-NQLTPRERDILKLI----AQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSRVE 71 (82)
T ss_dssp --CCG-GGSCHHHHHHHHHH----TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHH-ccCCHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHH
Confidence 44556 89999999999995 48999999999999999999999999999998654443
No 29
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=98.21 E-value=1.4e-06 Score=68.45 Aligned_cols=51 Identities=27% Similarity=0.251 Sum_probs=46.0
Q ss_pred HHHhhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 010835 432 LIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 487 (499)
Q Consensus 432 ~L~~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L 487 (499)
.+ ..|+++|+.|+.++ .+|+|.+|||+.||+|+.||++++.+++++|+..-
T Consensus 8 ~~-~~L~~~e~~il~~~----~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 58 (74)
T 1fse_A 8 SK-PLLTKREREVFELL----VQDKTTKEIASELFISEKTVRNHISNAMQKLGVKG 58 (74)
T ss_dssp CC-CCCCHHHHHHHHHH----TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCSS
T ss_pred CC-CCCCHHHHHHHHHH----HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCC
Confidence 44 78999999999994 48999999999999999999999999999998643
No 30
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=98.14 E-value=3.1e-06 Score=70.43 Aligned_cols=47 Identities=21% Similarity=0.191 Sum_probs=43.8
Q ss_pred hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
..|+++|++||.+.+ +|+|.+|||+.||||..||+.++.++++||.-
T Consensus 28 ~~Lt~rE~~Vl~l~~----~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 28 DVLTPRECLILQEVE----KGFTNQEIADALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp -CCCHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 689999999999987 99999999999999999999999999999863
No 31
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=98.02 E-value=7.1e-06 Score=69.52 Aligned_cols=47 Identities=26% Similarity=0.349 Sum_probs=43.9
Q ss_pred hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
..|+++|++||.+.+ +|+|.+|||+.||||..||+..+.++++||.-
T Consensus 33 ~~Lt~re~~Vl~l~~----~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 33 KRLSPKESEVLRLFA----EGFLVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp SSCCHHHHHHHHHHH----HTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 579999999999965 89999999999999999999999999999963
No 32
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=98.01 E-value=3.8e-06 Score=63.70 Aligned_cols=44 Identities=27% Similarity=0.382 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010835 439 EREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 486 (499)
Q Consensus 439 ~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~ 486 (499)
|+|++|+.+ + .+|+|.+|||+.||+|..||+.++.++++||+..
T Consensus 1 ~re~~vl~l-~---~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 1 LRERQVLKL-I---DEGYTNHGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp CHHHHHHHH-H---HTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHH-H---HcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 579999999 5 5999999999999999999999999999999853
No 33
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=97.59 E-value=8.9e-05 Score=71.27 Aligned_cols=46 Identities=20% Similarity=0.044 Sum_probs=43.3
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.|+++|++|+.+.. +|+|.+|||++||||..||+.++.++++||.-
T Consensus 175 ~Lt~~e~~vl~~~~----~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 175 MLSPREMLCLVWAS----KGKTASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp SCCHHHHHHHHHHH----TTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 69999999999965 99999999999999999999999999999963
No 34
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=97.58 E-value=9.1e-05 Score=71.12 Aligned_cols=46 Identities=22% Similarity=0.183 Sum_probs=43.0
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.|+++|++|+.+.. +|+|.+|||++||+|..||+.++.++++||.-
T Consensus 173 ~Lt~~e~~vl~~~~----~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 218 (234)
T 1l3l_A 173 WLDPKEATYLRWIA----VGKTMEEIADVEGVKYNSVRVKLREAMKRFDV 218 (234)
T ss_dssp CCCHHHHHHHHHHT----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 59999999999964 99999999999999999999999999999963
No 35
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=97.42 E-value=0.00016 Score=69.80 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=43.4
Q ss_pred hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR 484 (499)
..|+++|++|+.+.. +|+|.+|||++||||..||+..+.++++||.
T Consensus 174 ~~Lt~re~~vl~~~~----~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (237)
T 3szt_A 174 VRLTARETEMLKWTA----VGKTYGEIGLILSIDQRTVKFHIVNAMRKLN 219 (237)
T ss_dssp CCCCHHHHHHHHHHH----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHH----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 479999999999975 9999999999999999999999999999986
No 36
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=97.31 E-value=0.00025 Score=69.78 Aligned_cols=46 Identities=22% Similarity=0.210 Sum_probs=43.7
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.|+++|++|+.+.. +|+|.+|||++||||..||+.++.++++||..
T Consensus 197 ~Lt~re~~vl~~~~----~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 197 PLSQREYDIFHWMS----RGKTNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp CCCHHHHHHHHHHH----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 69999999999986 99999999999999999999999999999963
No 37
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=97.17 E-value=0.00048 Score=48.71 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=33.2
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.++..+...+ .+|+|..|||+.||||+.||.+++.+
T Consensus 5 ~l~~~~~~~i~~~~---~~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMK---LLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 57888886555556 58999999999999999999988754
No 38
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=97.09 E-value=0.0011 Score=56.40 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=42.8
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR 484 (499)
.+++.-..|-.+|| .+|+|+.|||+.||+|+.+|++.+.+|...+.
T Consensus 18 ~~~~~~~~~A~lyY---v~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 18 EVGQQTIEIARGVL---VDGKPQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp CCCHHHHHHHHHHH---TTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH---HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 68898999999999 99999999999999999999999999988763
No 39
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=96.79 E-value=0.00076 Score=49.85 Aligned_cols=39 Identities=21% Similarity=0.153 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 437 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 437 L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
+++..+.|+.+ + .+|+|..|||+.||+|+.||++++.+|
T Consensus 17 ~~~~~~~i~~l-~---~~g~s~~eIA~~lgis~~TV~~~l~~a 55 (55)
T 2x48_A 17 EDDLVSVAHEL-A---KMGYTVQQIANALGVSERKVRRYLESC 55 (55)
T ss_dssp HHHHHHHHHHH-H---HTTCCHHHHHHHHTSCHHHHHHHHTC-
T ss_pred CHHHHHHHHHH-H---HcCCCHHHHHHHHCcCHHHHHHHHHhC
Confidence 45566677777 4 488999999999999999999987654
No 40
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=96.60 E-value=0.0061 Score=55.82 Aligned_cols=50 Identities=22% Similarity=0.373 Sum_probs=44.7
Q ss_pred HHHHHhhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010835 430 NKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 430 ~~~L~~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR 484 (499)
...+ ..|+++|++|+.+.. +|+|.++||+.||+|..||+.++.++++||.
T Consensus 137 ~~~~-~~Lt~rE~~vl~~l~----~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~ 186 (208)
T 1yio_A 137 EQLF-SSLTGREQQVLQLTI----RGLMNKQIAGELGIAEVTVKVHRHNIMQKLN 186 (208)
T ss_dssp HHHH-HTSCHHHHHHHHHHT----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HHHH-HhcCHHHHHHHHHHH----cCCcHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 3344 579999999998864 8899999999999999999999999999996
No 41
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=96.41 E-value=0.0053 Score=56.62 Aligned_cols=46 Identities=28% Similarity=0.392 Sum_probs=42.9
Q ss_pred hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR 484 (499)
..|+++|++|+.+.. +|+|.+|||+.+++|..||+.++.+.++||.
T Consensus 153 ~~Lt~rE~~vl~~l~----~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~ 198 (215)
T 1a04_A 153 NQLTPRERDILKLIA----QGLPNKMIARRLDITESTVKVHVKHMLKKMK 198 (215)
T ss_dssp GGSCHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHH----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 469999999999876 8899999999999999999999999999995
No 42
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=96.16 E-value=0.0069 Score=56.74 Aligned_cols=46 Identities=30% Similarity=0.348 Sum_probs=42.6
Q ss_pred hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR 484 (499)
..|+++|++|+.+-. +|+|.+|||+.|++|..||+..+.+.++||.
T Consensus 148 ~~LT~rE~~vL~~l~----~g~s~~eIa~~l~is~~TV~~hi~~l~~KL~ 193 (225)
T 3c3w_A 148 SGLTDQERTLLGLLS----EGLTNKQIADRMFLAEKTVKNYVSRLLAKLG 193 (225)
T ss_dssp TTSCHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHH----CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 469999999998875 8899999999999999999999999999985
No 43
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=95.53 E-value=0.0096 Score=55.57 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=42.5
Q ss_pred hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR 484 (499)
..|+++|++|+.+.. +|+|.++||+.|++|..||+.++.+.++||.
T Consensus 158 ~~Lt~rE~~vL~~l~----~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~ 203 (225)
T 3klo_A 158 AKLTKREQQIIKLLG----SGASNIEIADKLFVSENTVKTHLHNVFKKIN 203 (225)
T ss_dssp HTSCHHHHHHHHHHT----TTCCHHHHHHHTTCCHHHHHHHHHHHTTTSC
T ss_pred ccCCHHHHHHHHHHH----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 469999999999864 7899999999999999999999999999984
No 44
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=95.03 E-value=0.062 Score=50.61 Aligned_cols=57 Identities=26% Similarity=0.399 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 424 ALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 424 el~~~L~~~L~~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.........+ ..|+++++.|+.+.. .+++..+||..||+|..+|+..+.++++||.-
T Consensus 187 ~~~~~~~~~l-~~L~~r~~~i~~~~~----~g~~~~eia~~l~~s~~tv~~~l~~i~~kl~~ 243 (258)
T 3p7n_A 187 ARRERAAEML-KTLSPRQLEVTTLVA----SGLRNKEVAARLGLSEKTVKMHRGLVMEKLNL 243 (258)
T ss_dssp HHHHHHHHHH-TTSCHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH-hhcCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 3445666777 899999999999876 78999999999999999999999999999863
No 45
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=94.28 E-value=0.0057 Score=67.18 Aligned_cols=59 Identities=22% Similarity=0.341 Sum_probs=35.9
Q ss_pred HhhhHHHHHHhhccccCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccChhHHHhhhhhhHHHHHHHHHHHHHHH
Q 010835 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGSSLRISRPELQSILMECSLAREKLVMSNVRLV 268 (499)
Q Consensus 189 ~~~~~~~yl~~i~~~~~Lt~eEe~eL~~~ik~Gd~l~~~~~~~~~~~g~~~~~~~~~l~~~l~~~~~A~e~LIe~yl~LV 268 (499)
+.|.+++||++|++.|+||+++|++|+++|..|+. .+...+.++.-+.+.|+..|..+.
T Consensus 94 ~~dpvrmyl~emg~~~ll~~~~e~~~ak~ie~g~~---------------------~~~~~~~~~P~ti~~il~~~~~l~ 152 (613)
T 3iyd_F 94 TTDPVRMYMREMGTVELLTREGEIDIAKRIEDGIN---------------------QVQCSVAEYPEAITYLLEQYNRVE 152 (613)
T ss_dssp -----------C--------CSSSTTTHHHHHHHH---------------------HHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHhcccccCCchhHHHHHHHHHHhHH---------------------HHHHHHccCHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999986 678888899999999999988764
No 46
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=93.88 E-value=0.051 Score=50.06 Aligned_cols=49 Identities=18% Similarity=0.118 Sum_probs=40.9
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHC---CCHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIG---LSRERVRQVGLVALEKLK 484 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~Lg---IS~~rVrqi~~rALkKLR 484 (499)
.|+++|++|+.+-.-=-++.+|.+|||+.++ +|..||+.++.+.++||.
T Consensus 145 ~Lt~rE~~vl~~l~~~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~ 196 (220)
T 1p2f_A 145 HLPKKEFEILLFLAENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIE 196 (220)
T ss_dssp CCCHHHHHHHHHHHHTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHC
T ss_pred ecCHHHHHHHHHHHHCCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHh
Confidence 5999999999876510012399999999999 999999999999999985
No 47
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=93.87 E-value=0.034 Score=39.37 Aligned_cols=34 Identities=12% Similarity=0.154 Sum_probs=26.9
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 441 EREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 441 ER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.+.|+.++ .+|.|..+||+.+|||+.||.+++.+
T Consensus 11 ~~~i~~l~----~~g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 11 QEQISRLL----EKGHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHHHHHH----HTTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred HHHHHHHH----HcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 34566663 36799999999999999999887654
No 48
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=93.66 E-value=0.068 Score=46.54 Aligned_cols=39 Identities=18% Similarity=0.315 Sum_probs=30.0
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVAL 480 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rAL 480 (499)
.|..| .+|+.+-. +|+|+.|||+.+|+|..||.+ ..++|
T Consensus 61 aLs~R-~eV~klL~----~G~syreIA~~~g~S~aTIsR-v~r~L 99 (119)
T 3kor_A 61 SLSQR-LQVAKMIK----QGYTYATIEQESGASTATISR-VKRSL 99 (119)
T ss_dssp HHHHH-HHHHHHHH----HTCCHHHHHHHHCCCHHHHHH-HHHHH
T ss_pred HHHHH-HHHHHHHH----cCCCHHHHHHHHCCCHHHHHH-HHHHH
Confidence 45566 67777754 789999999999999999975 34444
No 49
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=93.64 E-value=0.072 Score=49.96 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=40.0
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~L-----gIS~~rVrqi~~rALkKLR 484 (499)
.|+++|.+|+.+..-=-+..+|.+|||+.+ ++|..||+..+.+.++||.
T Consensus 153 ~LT~rE~~vL~~l~~~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~ 206 (238)
T 2gwr_A 153 SLTPLEFDLLVALARKPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVE 206 (238)
T ss_dssp CCCHHHHHHHHHHHHSTTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHCCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhc
Confidence 599999999988651001239999999999 9999999999999999985
No 50
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=93.43 E-value=0.062 Score=49.75 Aligned_cols=49 Identities=14% Similarity=0.084 Sum_probs=41.1
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~L-----gIS~~rVrqi~~rALkKLR 484 (499)
.|+++|.+|+.+-.-=.++.+|.+|||+.+ ++|..||+.++.+.++||.
T Consensus 156 ~Lt~rE~~vL~~l~~~~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~Kl~ 209 (230)
T 2oqr_A 156 TLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIE 209 (230)
T ss_dssp CCCHHHHHHHHHHHHTTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHHC
T ss_pred ecCHHHHHHHHHHHhCCCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHh
Confidence 699999999988651001349999999999 9999999999999999985
No 51
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=92.86 E-value=0.082 Score=48.66 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=41.0
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIG-----LSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~Lg-----IS~~rVrqi~~rALkKLR~ 485 (499)
.|+++|++|+.+-.-=-...+|.+|||+.++ +|..||+.++.+.++||..
T Consensus 151 ~Lt~rE~~vL~~l~~~~~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 205 (225)
T 1kgs_A 151 DLTKKEYQILEYLVMNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDK 205 (225)
T ss_dssp CCCHHHHHHHHHHHHTTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHHT
T ss_pred ecCHHHHHHHHHHHhCCCcccCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhhC
Confidence 5999999999876400012399999999998 9999999999999999863
No 52
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=92.71 E-value=0.13 Score=48.49 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=30.1
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 010835 441 EREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVAL 480 (499)
Q Consensus 441 ER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rAL 480 (499)
-..+..+ | ..|+|++|||+.||||+.+|++++..|.
T Consensus 14 G~ria~~-y---~~g~tQ~eIA~~lGiSr~~VSR~L~~A~ 49 (192)
T 1zx4_A 14 GLRLMRM-K---NDGMSQKDIAAKEGLSQAKVTRALQAAS 49 (192)
T ss_dssp HHHHHHH-H---HTTCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHHHH-H---HcCCCHHHHHHHhCcCHHHHHHHHHHhc
Confidence 3445566 6 5889999999999999999999988765
No 53
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=92.57 E-value=0.079 Score=49.04 Aligned_cols=46 Identities=17% Similarity=0.123 Sum_probs=40.4
Q ss_pred hCCHHHHHHHHHHhcCCCCC----CCHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKEC----LTWEDISKRIG-----LSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg----~SleEIAe~Lg-----IS~~rVrqi~~rALkKLR~ 485 (499)
.|+++|.+|+.+-. ++ +|.++||+.++ +|..||+.++.+.++||..
T Consensus 159 ~Lt~rE~~vL~~l~----~g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 213 (233)
T 1ys7_A 159 DLTKREFDLLAVLA----EHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEA 213 (233)
T ss_dssp CCCHHHHHHHHHHH----HTTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHH----hCCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhcc
Confidence 59999999998865 44 99999999998 9999999999999999964
No 54
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=92.30 E-value=0.15 Score=43.90 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=32.9
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.++..|...+ .+|+|..+||+.||+|+.||..++.+
T Consensus 6 ~~s~~~r~~i~~~~---~~G~s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 6 ALSDTERAQLDVMK---LLNVSLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCHHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHc
Confidence 46777776655555 57899999999999999999998865
No 55
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=92.24 E-value=0.2 Score=41.90 Aligned_cols=41 Identities=17% Similarity=-0.001 Sum_probs=31.5
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
.+++.++.-+...+ .+|+|..+||+.||||+.||++++.+.
T Consensus 17 ~~s~~~r~~i~~~~---~~g~s~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 17 PLPNNIRLKIVEMA---ADGIRPCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp CCCHHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45666555443434 478999999999999999999998764
No 56
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=91.50 E-value=0.035 Score=54.02 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHhhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHHHH
Q 010835 429 VNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIG--LSRERVRQVGLVALEKLK 484 (499)
Q Consensus 429 L~~~L~~~L~~rER~VI~LryGLd~eg~SleEIAe~Lg--IS~~rVrqi~~rALkKLR 484 (499)
+...+ ..|++.++.+. ..| +.+.|++|||+.|| ||.++|+.++.+|++.|.
T Consensus 192 l~e~i-~~l~~~~~~L~-~~~---~~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~ls 244 (245)
T 3ugo_A 192 MVETI-NKLSRTARQLQ-QEL---GREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVS 244 (245)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHH-HHHHHHHHHHH-HHh---CCCCCHHHHHHHHCCCCCHHHHHHHHHHHhhccC
Confidence 33445 57777777744 455 47789999999999 999999999999988763
No 57
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=91.01 E-value=0.13 Score=48.87 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=40.5
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHH-----HHCCCHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISK-----RIGLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe-----~LgIS~~rVrqi~~rALkKLR 484 (499)
.|+++|++|+.+..-=....+|.+|||+ .++++..||+..+.+.++||.
T Consensus 182 ~LT~rE~evL~ll~~g~~~~~s~~eIa~~l~~~~l~~s~~TV~~hi~~lr~KL~ 235 (249)
T 3q9s_A 182 RLSPKEFDILALLIRQPGRVYSRQEIGQEIWQGRLPEGSNVVDVHMANLRAKLR 235 (249)
T ss_dssp CCCHHHHHHHHHHHHSTTCCCCHHHHHHHHHTTCSCTTCSHHHHHHHHHHHHHC
T ss_pred ecCHHHHHHHHHHHHCCCceEcHHHHHHHhcCCCCCCCccCHHHHHHHHHHHhh
Confidence 5999999999987610023499999999 588899999999999999985
No 58
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=90.98 E-value=0.07 Score=49.23 Aligned_cols=46 Identities=9% Similarity=0.062 Sum_probs=41.3
Q ss_pred hCCHHHHHHHHHHhcCCCCC----CCHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKEC----LTWEDISKRIG-----LSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg----~SleEIAe~Lg-----IS~~rVrqi~~rALkKLR~ 485 (499)
.|+++|++|+.+-. ++ +|.+|||+.++ +|..||+.++.+.++||..
T Consensus 143 ~Lt~rE~~vL~~l~----~~~~~~~s~~~Ia~~l~~~~~~~s~~tv~~~i~~lr~KL~~ 197 (223)
T 2hqr_A 143 EVKGKPFEVLTHLA----RHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDK 197 (223)
T ss_dssp CCCSTTTHHHHHHH----HTCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHHT
T ss_pred ecCHHHHHHHHHHH----hCCCCcCCHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHhc
Confidence 59999999998865 45 99999999999 9999999999999999863
No 59
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=90.85 E-value=0.32 Score=42.63 Aligned_cols=42 Identities=19% Similarity=0.078 Sum_probs=32.5
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVAL 480 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rAL 480 (499)
.+++.+|.-|...+ .+|+|..+||+.||||+.||++++.+..
T Consensus 32 ~~s~e~r~~iv~~~---~~G~s~~~iA~~lgis~~TV~rw~~~~~ 73 (149)
T 1k78_A 32 PLPDVVRQRIVELA---HQGVRPCDISRQLRVSHGCVSKILGRYY 73 (149)
T ss_dssp CCCHHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45666665444444 4789999999999999999999987743
No 60
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=90.52 E-value=0.26 Score=49.19 Aligned_cols=36 Identities=25% Similarity=0.475 Sum_probs=31.7
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 010835 443 EIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALE 481 (499)
Q Consensus 443 ~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALk 481 (499)
.|..|+| .+++|..|||+.||||+.|||+.+..+.+
T Consensus 12 ~ia~l~~---~~~~~~~ela~~l~vS~~tIrRdL~~l~~ 47 (315)
T 2w48_A 12 KIAQLYY---EQDMTQAQIARELGIYRTTISRLLKRGRE 47 (315)
T ss_dssp HHHHHHH---TSCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4777888 78999999999999999999988887654
No 61
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=90.48 E-value=0.23 Score=39.62 Aligned_cols=40 Identities=20% Similarity=0.396 Sum_probs=27.5
Q ss_pred HHHHHHHHHHhcCC-CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 439 EREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 439 ~rER~VI~LryGLd-~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
+.++.||.+-.-.. .++.|..|||+.||||+.+|++++.+
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~ 54 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYS 54 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 44566665433211 24689999999999999999765443
No 62
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=90.25 E-value=0.45 Score=38.35 Aligned_cols=40 Identities=15% Similarity=0.248 Sum_probs=28.9
Q ss_pred hCCHHHH-HHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 436 TLGERER-EIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 436 ~L~~rER-~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
..++..+ .|+.+ | ..+.|..+||+.+|||+.||.+++.+.
T Consensus 22 ~ys~e~k~~~v~~-~---~~g~s~~~iA~~~gIs~sTl~rW~k~~ 62 (87)
T 2elh_A 22 SLTPRDKIHAIQR-I---HDGESKASVARDIGVPESTLRGWCKNE 62 (87)
T ss_dssp SCCHHHHHHHHHH-H---HHTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH-H---HCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3445443 34444 3 257999999999999999999987644
No 63
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=90.08 E-value=0.24 Score=40.34 Aligned_cols=25 Identities=12% Similarity=0.221 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.+.|..|||+.||||+.+|++++++
T Consensus 29 ~g~sa~eLAk~LgiSk~aVr~~L~~ 53 (82)
T 1oyi_A 29 EGATAAQLTRQLNMEKREVNKALYD 53 (82)
T ss_dssp STEEHHHHHHHSSSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5599999999999999999887764
No 64
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=89.86 E-value=0.35 Score=39.11 Aligned_cols=39 Identities=21% Similarity=0.415 Sum_probs=25.9
Q ss_pred HHHHHHHHHHhcCC-CCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 439 EREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 439 ~rER~VI~LryGLd-~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
+.++.|+.+-.... ++.+|..|||+.||||+.+|++.++
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~ 49 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLY 49 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 34555555433111 2469999999999999999865443
No 65
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=89.55 E-value=0.57 Score=39.96 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=30.6
Q ss_pred hhCCHHHHHHHHHHhcCC---CCCCCHHHHHHHHCCCHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLD---KECLTWEDISKRIGLSRERVRQ 474 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd---~eg~SleEIAe~LgIS~~rVrq 474 (499)
+-+++.|+.-+-.|+-+- .+|+|+.||++.+|+|..||.+
T Consensus 35 dL~T~~E~~alaqR~~Ia~lL~~G~SyreIa~~tG~StaTIsR 77 (107)
T 3frw_A 35 DVCTINELLSLSQRFEVAKMLTDKRTYLDISEKTGASTATISR 77 (107)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCccHHHHHH
Confidence 446887776666555441 3789999999999999999965
No 66
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=89.49 E-value=0.4 Score=36.95 Aligned_cols=44 Identities=18% Similarity=0.263 Sum_probs=29.1
Q ss_pred CCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 437 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 437 L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
+++..+.||.+--. +..++|..|||+.+|+|+.+|.+ .++.|++
T Consensus 8 m~~~~~~IL~~L~~-~~~~~s~~eLA~~lglsr~tv~~----~l~~L~~ 51 (67)
T 2heo_A 8 GDNLEQKILQVLSD-DGGPVAIFQLVKKCQVPKKTLNQ----VLYRLKK 51 (67)
T ss_dssp -CHHHHHHHHHHHH-HCSCEEHHHHHHHHCSCHHHHHH----HHHHHHH
T ss_pred ccHHHHHHHHHHHH-cCCCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 45555556655320 12569999999999999999864 4455543
No 67
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=89.10 E-value=0.61 Score=38.71 Aligned_cols=38 Identities=24% Similarity=0.163 Sum_probs=29.5
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 439 EREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 439 ~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
+|...|+.+.. ..+.|..+||+.+|||..||++.++.-
T Consensus 7 ~R~~~I~~~l~---~~~~ti~dlA~~~gVS~~TVsR~L~~~ 44 (93)
T 2l0k_A 7 ERTIKIGKYIV---ETKKTVRVIAKEFGVSKSTVHKDLTER 44 (93)
T ss_dssp HHHHHHHHHHH---HHCCCHHHHHHHHTSCHHHHHHHHTTH
T ss_pred HHHHHHHHHHH---HcCCCHHHHHHHHCCCHHHHHHHHcCC
Confidence 45555665544 345899999999999999999988754
No 68
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=89.02 E-value=0.57 Score=44.10 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=42.1
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~L-----gIS~~rVrqi~~rALkKLR~ 485 (499)
.|+++|.+|+.+..-=.+..+|.++|++.+ +++..||+.++.+.++||..
T Consensus 176 ~LT~rE~~iL~~l~~~~~~~~s~~~i~~~lw~~~~~~~~~tv~~~i~~lr~KL~~ 230 (250)
T 3r0j_A 176 SLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 230 (250)
T ss_dssp CCCHHHHHHHHHHHHTTTCCBCHHHHHHHHTTTSCCSCTHHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHHHCCCceEcHHHHHHHHcCCCCCCCccCHHHHHHHHHHhhcC
Confidence 699999999988652113569999999999 78999999999999999853
No 69
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=88.66 E-value=0.5 Score=38.49 Aligned_cols=40 Identities=15% Similarity=0.284 Sum_probs=30.5
Q ss_pred CCHHHHH-HHHHHhcCCCC-CCCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 437 LGERERE-IIRLYYGLDKE-CLTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 437 L~~rER~-VI~LryGLd~e-g~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
.++..+. |+.++. .. |.|..+||+.+|||+.||.+++.+.
T Consensus 6 ys~e~k~~~v~~~~---~~~g~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 6 YSEEFKRDAVALYE---NSDGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCHHHHHHHHHHHT---TGGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---HcCCChHHHHHHHHCcCHHHHHHHHHHH
Confidence 4555553 555554 34 8999999999999999999998654
No 70
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=88.17 E-value=0.76 Score=40.21 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=32.2
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.++.||.+-.. ....|..|||+.+|+|+++|++++.+
T Consensus 2 ~ld~~d~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~ 42 (144)
T 2cfx_A 2 KLDQIDLNIIEELKK--DSRLSMRELGRKIKLSPPSVTERVRQ 42 (144)
T ss_dssp CCCHHHHHHHHHHHH--CSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 378888888876431 35699999999999999999766543
No 71
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=88.04 E-value=1.7 Score=36.40 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=31.6
Q ss_pred CCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 437 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 437 L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.++.+..||.+-. ..+.|..|||+.+|+|+++|++.+.+
T Consensus 30 ~~~~~~~il~~L~---~~~~s~~ela~~l~is~stvsr~l~~ 68 (119)
T 2lkp_A 30 ATPSRLMILTQLR---NGPLPVTDLAEAIGMEQSAVSHQLRV 68 (119)
T ss_dssp CCHHHHHHHHHHH---HCCCCHHHHHHHHSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---HCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5778888887765 35799999999999999999766543
No 72
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=87.86 E-value=0.91 Score=38.90 Aligned_cols=41 Identities=12% Similarity=0.248 Sum_probs=32.3
Q ss_pred hhCCHHHHHHHHHHhcCCCCC--CCHHHHHHHHCCCHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLDKEC--LTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd~eg--~SleEIAe~LgIS~~rVrqi~~ 477 (499)
-.|++.+..|+..-.. ..+ +|..|||+.+|++++||.+.+.
T Consensus 22 ~gLt~~e~~il~~L~~--~~~~~~t~~eLa~~l~~s~sTV~r~L~ 64 (123)
T 3r0a_A 22 LNLTKADLNVMKSFLN--EPDRWIDTDALSKSLKLDVSTVQRSVK 64 (123)
T ss_dssp HTCCHHHHHHHHHHHH--STTCCEEHHHHHHHHTSCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH--CCCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 4799999999876541 234 8999999999999999964443
No 73
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=87.61 E-value=0.83 Score=40.94 Aligned_cols=40 Identities=23% Similarity=0.360 Sum_probs=31.3
Q ss_pred CCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 437 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 437 L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
|++.++.||.+--. ....|+.|||+.+|+|+.+|++++.+
T Consensus 1 lD~~d~~il~~L~~--~~~~s~~~la~~lg~s~~tv~~rl~~ 40 (162)
T 3i4p_A 1 MDRLDRKILRILQE--DSTLAVADLAKKVGLSTTPCWRRIQK 40 (162)
T ss_dssp CCHHHHHHHHHHTT--CSCSCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--CCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 56778888876430 24689999999999999999876654
No 74
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=86.94 E-value=0.7 Score=42.72 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=31.8
Q ss_pred hCCHHHHHHHHHHhcC---CCCCCCHHHHHHHHCCCHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGL---DKECLTWEDISKRIGLSRERVRQVG 476 (499)
Q Consensus 436 ~L~~rER~VI~LryGL---d~eg~SleEIAe~LgIS~~rVrqi~ 476 (499)
.|+++|++|+..-... .+.+.|..|||+.||+|..+|.+++
T Consensus 2 ~lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l 45 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHL 45 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHH
Confidence 5899999999874322 1346899999999999998876554
No 75
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=86.90 E-value=3.3 Score=35.12 Aligned_cols=77 Identities=18% Similarity=0.197 Sum_probs=48.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhhccccccccccCCCCCCCCCCccccccccccCCCCCcchHHHHHHHHHHHHHHHhhC
Q 010835 358 PSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTL 437 (499)
Q Consensus 358 pt~eEIA~~Lgis~e~v~~~l~~~~~~~SLD~~~~~~~~~~e~~~l~e~i~d~~~e~~Pee~ve~~el~~~L~~~L~~~L 437 (499)
-+..+||+.+|++...|.......... +... .. .-| ..|
T Consensus 23 ~s~~~ia~~lgis~~Tv~r~~~~~~~~------------g~~~--------~~---gr~------------------~~l 61 (141)
T 1u78_A 23 VSLHEMSRKISRSRHCIRVYLKDPVSY------------GTSK--------RA---PRR------------------KAL 61 (141)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHSGGGT------------TCCC--------CC---CCC------------------CSS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHccccc------------CCcC--------CC---CCC------------------CcC
Confidence 578999999999999999887654211 0000 00 011 123
Q ss_pred CHHHH-HHHHHHhcCCCCCCCHHHHHHHHC--CCHHHHHHHHHH
Q 010835 438 GERER-EIIRLYYGLDKECLTWEDISKRIG--LSRERVRQVGLV 478 (499)
Q Consensus 438 ~~rER-~VI~LryGLd~eg~SleEIAe~Lg--IS~~rVrqi~~r 478 (499)
++.+. .|+.+.- ....|..+|+..|| +|.+||.+++.+
T Consensus 62 ~~~~~~~i~~~~~---~~~~s~~~i~~~lg~~~s~~tV~r~l~~ 102 (141)
T 1u78_A 62 SVRDERNVIRAAS---NSCKTARDIRNELQLSASKRTILNVIKR 102 (141)
T ss_dssp CHHHHHHHHHHHH---HCCCCHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh---CCCCCHHHHHHHHCCCccHHHHHHHHHH
Confidence 33322 2333311 24589999999999 899999998875
No 76
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=86.66 E-value=0.34 Score=43.07 Aligned_cols=40 Identities=23% Similarity=0.097 Sum_probs=30.6
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.++..+|.-|...+ .+|+|..+||+.||||+.||++++.+
T Consensus 25 ~~s~e~r~~ii~l~---~~G~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 25 PLPEVVRQRIVDLA---HQGVRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp SSCHHHHHHHHHHH---HHTCCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 45555555444444 47899999999999999999998864
No 77
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=86.63 E-value=1.2 Score=39.08 Aligned_cols=42 Identities=12% Similarity=0.262 Sum_probs=32.3
Q ss_pred hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..|++.++.||.+-.. ....|..|||+.+|+|+.+|++++.+
T Consensus 5 ~~ld~~d~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~ 46 (151)
T 2dbb_A 5 RKLDRVDMQLVKILSE--NSRLTYRELADILNTTRQRIARRIDK 46 (151)
T ss_dssp -CCCHHHHHHHHHHHH--CTTCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3488889888876431 35699999999999999999765443
No 78
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=86.53 E-value=1.3 Score=38.91 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=32.1
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.++.||.+-.. ....|+.|||+.+|+|+.+|++++.+
T Consensus 4 ~ld~~~~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~ 44 (151)
T 2cyy_A 4 PLDEIDKKIIKILQN--DGKAPLREISKITGLAESTIHERIRK 44 (151)
T ss_dssp CCCHHHHHHHHHHHH--CTTCCHHHHHHHHCSCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 478888888876431 35699999999999999999766543
No 79
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=86.50 E-value=1.6 Score=37.05 Aligned_cols=62 Identities=15% Similarity=0.058 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHhcC--CCCCCCHHHHHHHHCCCHHHHHHHHHH----HHHHHHHHHH
Q 010835 426 KDEVNKLIIVTLGEREREIIRLYYGL--DKECLTWEDISKRIGLSRERVRQVGLV----ALEKLKHAAR 488 (499)
Q Consensus 426 ~~~L~~~L~~~L~~rER~VI~LryGL--d~eg~SleEIAe~LgIS~~rVrqi~~r----ALkKLR~~L~ 488 (499)
...|.... ..|++.|+.|......- ....+|..|||+..|+|..||.+.-++ +..-||..+.
T Consensus 9 ~~~i~~~~-~~ls~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kklG~~gf~efk~~l~ 76 (111)
T 2o3f_A 9 LAIIQSMX-HXLPPSERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLCXSLGLKGFQDLXMRVA 76 (111)
T ss_dssp HHHHHHHG-GGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHh-ccCCHHHHHHHHHHHHChHHHHhcCHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34566666 89999999998775410 113699999999999999999765532 3344554443
No 80
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=86.49 E-value=1.2 Score=35.83 Aligned_cols=42 Identities=12% Similarity=0.119 Sum_probs=32.3
Q ss_pred hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
..|++.+..+|...+. ...+.|..|||+.+|+|+.||++++.
T Consensus 17 ~~l~~~~~~~l~~l~~-~~~~~t~~ela~~l~is~~tv~~~l~ 58 (109)
T 2d1h_A 17 YKITDTDVAVLLKMVE-IEKPITSEELADIFKLSKTTVENSLK 58 (109)
T ss_dssp HTCCHHHHHHHHHHHH-HCSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHH-cCCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4789988887755431 13679999999999999999975544
No 81
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=86.41 E-value=1 Score=40.11 Aligned_cols=41 Identities=22% Similarity=0.218 Sum_probs=32.4
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.++.||.+-.. ....|..|||+.+|+|+.+|++++.+
T Consensus 7 ~ld~~~~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~ 47 (162)
T 2p5v_A 7 TLDKTDIKILQVLQE--NGRLTNVELSERVALSPSPCLRRLKQ 47 (162)
T ss_dssp CCCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 478888888876431 34699999999999999999766544
No 82
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=86.40 E-value=1.1 Score=39.11 Aligned_cols=40 Identities=10% Similarity=0.198 Sum_probs=30.5
Q ss_pred CCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 437 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 437 L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
|++.++.||.+-. .....|..|||+.+|+|+++|++++.+
T Consensus 1 ld~~~~~il~~L~--~~~~~~~~ela~~lg~s~~tv~~~l~~ 40 (150)
T 2pn6_A 1 MDEIDLRILKILQ--YNAKYSLDEIAREIRIPKATLSYRIKK 40 (150)
T ss_dssp CCHHHHHHHHHHT--TCTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CChHHHHHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5677788887643 134699999999999999999766543
No 83
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=86.35 E-value=1.1 Score=39.44 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=32.5
Q ss_pred hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..|++.++.||.+-. .....|..|||+.+|+|+++|++++.+
T Consensus 3 ~~ld~~~~~iL~~L~--~~~~~s~~ela~~lg~s~~tv~~~l~~ 44 (150)
T 2w25_A 3 EALDDIDRILVRELA--ADGRATLSELATRAGLSVSAVQSRVRR 44 (150)
T ss_dssp -CCCHHHHHHHHHHH--HCTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 358888988887643 135699999999999999999766543
No 84
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=86.31 E-value=1.9 Score=35.55 Aligned_cols=37 Identities=19% Similarity=0.128 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 438 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 438 ~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
++....||.+-. ..+++..|||+.+|+|+++|++++.
T Consensus 25 ~~~r~~IL~~L~---~~~~~~~ela~~l~is~stvs~~L~ 61 (106)
T 1r1u_A 25 DYNRIRIMELLS---VSEASVGHISHQLNLSQSNVSHQLK 61 (106)
T ss_dssp SHHHHHHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 455666776654 4678999999999999999976554
No 85
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=86.24 E-value=0.79 Score=34.04 Aligned_cols=46 Identities=7% Similarity=0.089 Sum_probs=31.2
Q ss_pred CCHHHHHHHHHHhcCCCCCCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010835 437 LGEREREIIRLYYGLDKECLT----WEDISKRIGLSRERVRQVGLVALEKLKHA 486 (499)
Q Consensus 437 L~~rER~VI~LryGLd~eg~S----leEIAe~LgIS~~rVrqi~~rALkKLR~~ 486 (499)
.++..+.-+...+ ..+.| ..+||..+||++++|++++.. ...++..
T Consensus 6 ys~efK~~~~~~~---~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~-~~~~~~~ 55 (59)
T 2glo_A 6 FTPHFKLQVLESY---RNDNDCKGNQRATARKYNIHRRQIQKWLQC-ESNLRSS 55 (59)
T ss_dssp CCHHHHHHHHHHH---HHCTTTTTCHHHHHHHTTSCHHHHHHHHTT-HHHHHHH
T ss_pred CCHHHHHHHHHHH---HcCCCcchHHHHHHHHHCcCHHHHHHHHHH-HHHHHHH
Confidence 3444443333444 35678 999999999999999999764 3444443
No 86
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=86.10 E-value=1.4 Score=38.74 Aligned_cols=41 Identities=17% Similarity=0.319 Sum_probs=32.3
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.++.||.+-.. ....|..|||+.+|+|+.+|++++.+
T Consensus 5 ~ld~~d~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~ 45 (152)
T 2cg4_A 5 LIDNLDRGILEALMG--NARTAYAELAKQFGVSPETIHVRVEK 45 (152)
T ss_dssp CCCHHHHHHHHHHHH--CTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 478888888876431 35699999999999999999766544
No 87
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=86.02 E-value=1.4 Score=37.69 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=32.7
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..|+..-+ ..+.|..|||+.+|+++++|++.+.+
T Consensus 35 ~lt~~~~~iL~~l~---~~~~t~~eLa~~l~~s~~tvs~~l~~ 74 (146)
T 3tgn_A 35 ALTNTQEHILMLLS---EESLTNSELARRLNVSQAAVTKAIKS 74 (146)
T ss_dssp CCCHHHHHHHHHHT---TCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---hCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 57888888887765 34499999999999999999765544
No 88
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=85.90 E-value=1.2 Score=38.41 Aligned_cols=39 Identities=23% Similarity=0.448 Sum_probs=30.0
Q ss_pred CCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 437 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 437 L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
|++.++.|+..-. .....|..|||+.+|+|+.+|++++.
T Consensus 2 ld~~~~~il~~L~--~~~~~~~~ela~~lg~s~~tv~~~l~ 40 (141)
T 1i1g_A 2 IDERDKIILEILE--KDARTPFTEIAKKLGISETAVRKRVK 40 (141)
T ss_dssp CCSHHHHHHHHHH--HCTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHH--HcCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 6777888887542 13568999999999999999975544
No 89
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=85.80 E-value=1.1 Score=36.14 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=32.7
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..|+..-.. ..+.|..|||+.+|+++.+|.+.+.+
T Consensus 17 ~l~~~~~~il~~l~~--~~~~s~~ela~~l~is~~tv~~~l~~ 57 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLE--RGGMRVSEIARELDLSARFVRDRLKV 57 (109)
T ss_dssp CCCHHHHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 578998888876531 36799999999999999999765543
No 90
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=85.60 E-value=2.3 Score=34.65 Aligned_cols=37 Identities=8% Similarity=0.078 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 438 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 438 ~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
+|....||.+-. ..+++..|||+.+|+|+++|++++.
T Consensus 22 ~~~r~~Il~~L~---~~~~~~~ela~~l~is~~tvs~~L~ 58 (102)
T 3pqk_A 22 HPVRLMLVCTLV---EGEFSVGELEQQIGIGQPTLSQQLG 58 (102)
T ss_dssp SHHHHHHHHHHH---TCCBCHHHHHHHHTCCTTHHHHHHH
T ss_pred CHHHHHHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 555666666654 4679999999999999999976544
No 91
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=85.54 E-value=1.1 Score=36.75 Aligned_cols=45 Identities=22% Similarity=0.215 Sum_probs=33.1
Q ss_pred HHHHHHHhhCCHHHHHHH-HHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 428 EVNKLIIVTLGEREREII-RLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 428 ~L~~~L~~~L~~rER~VI-~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.+.++| -+|....|+ .+.- ..+++..|||+.+|+|+++|++++..
T Consensus 19 ~~~~aL---~~~~Rl~IL~~l~~---~~~~~~~ela~~l~is~stvs~hL~~ 64 (99)
T 2zkz_A 19 ELLKTM---AHPMRLKIVNELYK---HKALNVTQIIQILKLPQSTVSQHLCK 64 (99)
T ss_dssp HHHHHH---CSHHHHHHHHHHHH---HSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHh---CCHHHHHHHHHHHH---CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 344445 367777787 3432 36799999999999999999877653
No 92
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=85.35 E-value=1.8 Score=34.97 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 438 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 438 ~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
++....|+.+-. ..++|..|||+.+|+|+++|++.+.
T Consensus 22 ~~~r~~Il~~L~---~~~~~~~ela~~l~is~~tvs~~L~ 58 (98)
T 3jth_A 22 NERRLQILCMLH---NQELSVGELCAKLQLSQSALSQHLA 58 (98)
T ss_dssp SHHHHHHHHHTT---TSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHh---cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 566666776544 4679999999999999999975543
No 93
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=85.03 E-value=2.3 Score=38.67 Aligned_cols=53 Identities=21% Similarity=0.253 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 425 LKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 425 l~~~L~~~L~~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
+...+...+ ..|++.|..||..-+....++.|..+||+.+|+++++|.+.+.+
T Consensus 28 ~~~~~~~~~-~~lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~ 80 (189)
T 3nqo_A 28 IQIEGDKYF-GILTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVAN 80 (189)
T ss_dssp HHHHHHHHH-CSSCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHH-ccCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 344455555 57999999998776522235799999999999999999766544
No 94
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=84.83 E-value=0.75 Score=35.44 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 456 LTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 456 ~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
+|+.|||+.+|||+.||+++++.-
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~ 24 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGK 24 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCC
Confidence 478999999999999999998743
No 95
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=84.61 E-value=1.4 Score=40.11 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=32.6
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.++.||.+--. ....|+.|||+.+|+|+.+|++++.+
T Consensus 24 ~ld~~d~~IL~~L~~--~~~~s~~eLA~~lglS~~tv~~rl~~ 64 (171)
T 2e1c_A 24 PLDEIDKKIIKILQN--DGKAPLREISKITGLAESTIHERIRK 64 (171)
T ss_dssp CCCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 588999888876431 34699999999999999999766543
No 96
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=84.20 E-value=2.5 Score=33.66 Aligned_cols=38 Identities=13% Similarity=0.078 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 438 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 438 ~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
++.+..|+..-. +..+.|..|||+.+|+|+++|++.+.
T Consensus 23 ~~~~~~il~~l~--~~~~~s~~ela~~l~is~~tvs~~l~ 60 (99)
T 3cuo_A 23 HPKRLLILCMLS--GSPGTSAGELTRITGLSASATSQHLA 60 (99)
T ss_dssp SHHHHHHHHHHT--TCCSEEHHHHHHHHCCCHHHHHHHHH
T ss_pred ChHHHHHHHHHH--hCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 567777776654 13479999999999999999976554
No 97
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=84.19 E-value=3.8 Score=34.51 Aligned_cols=52 Identities=8% Similarity=0.031 Sum_probs=36.7
Q ss_pred HHHHHHHH-hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 427 DEVNKLII-VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 427 ~~L~~~L~-~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..+...+. ..|++.+..|+..-+.-+..+.|..|||+.+|+++++|.+.+.+
T Consensus 21 ~~~~~~~~~~~lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~ 73 (141)
T 3bro_A 21 TRFDIFAKKYDLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQR 73 (141)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHH
Confidence 33444441 26899999988776522222799999999999999999765543
No 98
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=83.75 E-value=2.3 Score=35.88 Aligned_cols=62 Identities=11% Similarity=0.177 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHhcC--CCCCCCHHHHHHHHCCCHHHHHHHHH----HHHHHHHHHHH
Q 010835 426 KDEVNKLIIVTLGEREREIIRLYYGL--DKECLTWEDISKRIGLSRERVRQVGL----VALEKLKHAAR 488 (499)
Q Consensus 426 ~~~L~~~L~~~L~~rER~VI~LryGL--d~eg~SleEIAe~LgIS~~rVrqi~~----rALkKLR~~L~ 488 (499)
...|.... ..|++.|+.|.....-- ....+|..|||+..|+|+.||-+.-+ .+..-||..+.
T Consensus 5 ~~~I~~~~-~~lt~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kkLGf~gf~efk~~l~ 72 (107)
T 3iwf_A 5 LYKIDNQY-PYFTKNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSKKVTPGGFNELKTRLS 72 (107)
T ss_dssp HHHHHHHG-GGSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHSTTHHHHHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHhCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 45666777 89999999998765411 12469999999999999999976443 34555555554
No 99
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=83.67 E-value=1.6 Score=39.60 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=32.3
Q ss_pred hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..|++.++.||.+-.. ....|..|||+.+|+|+.+|++++.+
T Consensus 13 ~~ld~~d~~IL~~L~~--~~~~s~~eLA~~lglS~~tv~~~l~~ 54 (171)
T 2ia0_A 13 IHLDDLDRNILRLLKK--DARLTISELSEQLKKPESTIHFRIKK 54 (171)
T ss_dssp -CCCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4678888888876431 34699999999999999999766544
No 100
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=83.54 E-value=2.5 Score=36.04 Aligned_cols=52 Identities=8% Similarity=0.185 Sum_probs=36.0
Q ss_pred HHHHHHHHHH---hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 425 LKDEVNKLII---VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 425 l~~~L~~~L~---~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
+...+...+. ..|++.+..||..-+. ..+.|..|||+.+|+++++|.+.+.+
T Consensus 20 ~~~~~~~~l~~~~~~lt~~~~~vL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~ 74 (142)
T 3ech_A 20 VRTRIQSELDCQRLDLTPPDVHVLKLIDE--QRGLNLQDLGRQMCRDKALITRKIRE 74 (142)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHH--TTTCCHHHHHHHHC---CHHHHHHHH
T ss_pred HHHHHHHHHhhccCCCCHHHHHHHHHHHh--CCCcCHHHHHHHhCCCHHHHHHHHHH
Confidence 3344555552 2489999999887652 35899999999999999999766554
No 101
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=83.01 E-value=4.1 Score=34.72 Aligned_cols=44 Identities=18% Similarity=0.227 Sum_probs=32.6
Q ss_pred HHHHHHHhhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 428 EVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 428 ~L~~~L~~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
.+.++| -++....||.+-. ..+++..|||+.+|+|+++|++++.
T Consensus 38 ~~~kaL---~~~~rl~IL~~L~---~~~~s~~ela~~lgis~stvs~~L~ 81 (122)
T 1r1t_A 38 EFFAVL---ADPNRLRLLSLLA---RSELCVGDLAQAIGVSESAVSHQLR 81 (122)
T ss_dssp HHHHHH---CCHHHHHHHHHHT---TCCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHh---CCHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 344444 3666777877654 3579999999999999999976554
No 102
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=82.86 E-value=0.91 Score=37.65 Aligned_cols=46 Identities=22% Similarity=0.377 Sum_probs=32.4
Q ss_pred hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
..+.+....|+...+- .++.+|..|||+.+|+|+.+|+ +++++|..
T Consensus 14 ~~~~~~~l~Il~~l~~-~g~~~s~~eLa~~lgvs~~tV~----~~L~~L~~ 59 (110)
T 1q1h_A 14 SLLGDDVIDVLRILLD-KGTEMTDEEIANQLNIKVNDVR----KKLNLLEE 59 (110)
T ss_dssp TTSCSTTHHHHHHHHH-HCSCBCHHHHHHTTTSCHHHHH----HHHHHHHH
T ss_pred HHcChHHHHHHHHHHH-cCCCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 3456677777765431 1346999999999999999996 45555543
No 103
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=82.78 E-value=3.7 Score=34.58 Aligned_cols=53 Identities=15% Similarity=0.224 Sum_probs=37.9
Q ss_pred HHHHHHHHH-hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 426 KDEVNKLII-VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 426 ~~~L~~~L~-~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
...+...+. ..|++.+..|+..-+.-+.++.|..|||+.+|+++++|.+.+.+
T Consensus 17 ~~~~~~~~~~~~lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~ 70 (139)
T 3eco_A 17 KQKADQKLEQFDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRN 70 (139)
T ss_dssp HHHHHHHHGGGTCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHH
Confidence 334444441 26899999998876521124899999999999999999766554
No 104
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=82.54 E-value=3.1 Score=35.60 Aligned_cols=47 Identities=13% Similarity=-0.026 Sum_probs=32.1
Q ss_pred HHHHHHHH-hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 427 DEVNKLII-VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 427 ~~L~~~L~-~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..+...+. ..+++.+-.-++.. .++|++++|+.+|+|+.+|++++.-
T Consensus 60 ~e~~r~~~~~~~~~~~l~~~R~~-----~glsq~~la~~~g~s~~~i~~~E~g 107 (133)
T 3o9x_A 60 KAFRASVNAETVAPEFIVKVRKK-----LSLTQKEASEIFGGGVNAFSRYEKG 107 (133)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHH-----TTCCHHHHHHHHCSCTTHHHHHHHT
T ss_pred HHHHHHHhhcCCCHHHHHHHHHH-----cCCCHHHHHHHHCCCHHHHHHHHCC
Confidence 34444442 23455443334433 5699999999999999999999874
No 105
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=82.48 E-value=2.6 Score=35.05 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=27.8
Q ss_pred CHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 438 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 438 ~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
++....||.+-. ..++|..|||+.+|+|+++|++.+.
T Consensus 24 ~~~r~~IL~~L~---~~~~s~~eLa~~lgis~stvs~~L~ 60 (108)
T 2kko_A 24 NGRRLQILDLLA---QGERAVEAIATATGMNLTTASANLQ 60 (108)
T ss_dssp TSTTHHHHHHHT---TCCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHH---cCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 344456666544 4679999999999999999976554
No 106
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=82.41 E-value=2.1 Score=36.44 Aligned_cols=40 Identities=10% Similarity=-0.030 Sum_probs=33.8
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..|+..-+ .++.|..|||+.+|+++++|.+.+.+
T Consensus 34 ~l~~~~~~iL~~l~---~~~~~~~ela~~l~~s~~tvs~~l~~ 73 (146)
T 2gxg_A 34 NLSYLDFLVLRATS---DGPKTMAYLANRYFVTQSAITASVDK 73 (146)
T ss_dssp TCCHHHHHHHHHHT---TSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh---cCCcCHHHHHHHhCCCchhHHHHHHH
Confidence 58999999887765 57899999999999999999765543
No 107
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=82.36 E-value=1.8 Score=36.98 Aligned_cols=43 Identities=16% Similarity=0.075 Sum_probs=31.2
Q ss_pred hCCHHHHHHHHHHhcC--CCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGL--DKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGL--d~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..+|..-+-+ ...+.|..+||+.+|+++.+|++.+.+
T Consensus 10 ~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~ 54 (139)
T 2x4h_A 10 NLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSH 54 (139)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHH
Confidence 5777777776654422 235789999999999999999765543
No 108
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=82.24 E-value=2 Score=39.83 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 437 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 437 L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
+++.++.|+.+-. ..+.|..|||+.+|+|++||++++.+
T Consensus 18 ~d~~~~~IL~~L~---~~~~s~~eLA~~lglS~stv~~~l~~ 56 (192)
T 1uly_A 18 LEDTRRKILKLLR---NKEMTISQLSEILGKTPQTIYHHIEK 56 (192)
T ss_dssp HSHHHHHHHHHHT---TCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5788888888765 36799999999999999999876544
No 109
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=81.76 E-value=0.88 Score=37.46 Aligned_cols=43 Identities=7% Similarity=0.084 Sum_probs=33.7
Q ss_pred hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
..|++.|..|+..-+-.+.+|.+.+|||+.+|++..+|..++.
T Consensus 16 ~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk 58 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILK 58 (91)
T ss_dssp CCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 4678888888887663334689999999999999999865443
No 110
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=81.18 E-value=1.6 Score=37.10 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=33.2
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..|+.+-+ +...++|..|||+.+|+++++|.+++.+
T Consensus 23 gl~~~~~~il~~L~-~~~~~~t~~ela~~l~~~~stvs~~l~~ 64 (152)
T 1ku9_A 23 GLNKSVGAVYAILY-LSDKPLTISDIMEELKISKGNVSMSLKK 64 (152)
T ss_dssp TCCHHHHHHHHHHH-HCSSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCChhHHHHHHHHH-HcCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 68999888887653 2236799999999999999999765543
No 111
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=81.14 E-value=1.8 Score=34.02 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..++|+.|+|+.+|||+.+|+++++.
T Consensus 29 ~~glsq~elA~~~gis~~~is~~e~g 54 (83)
T 2a6c_A 29 NSGLTQFKAAELLGVTQPRVSDLMRG 54 (83)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 45799999999999999999999863
No 112
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=81.09 E-value=2.9 Score=32.65 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=31.3
Q ss_pred hCCHHHHHHHHHHhcCCC-CCCCHHHHHHHH-----CCCHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDK-ECLTWEDISKRI-----GLSRERVRQVG 476 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~-eg~SleEIAe~L-----gIS~~rVrqi~ 476 (499)
+++++...|+.+-.. .. .+.|.+||++.+ ++|..||.+.+
T Consensus 14 ~~t~~r~~IL~~l~~-~~~~~~s~~el~~~l~~~~~~is~~TVyR~L 59 (83)
T 2fu4_A 14 KVTLPRLKILEVLQE-PDNHHVSAEDLYKRLIDMGEEIGLATVYRVL 59 (83)
T ss_dssp CCCHHHHHHHHHHTS-GGGSSBCHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHh-CCCCCCCHHHHHHHHHHhCCCCCHhhHHHHH
Confidence 588888888887541 11 469999999999 99999996443
No 113
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=80.93 E-value=5.8 Score=31.86 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 438 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 438 ~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
++....||.+- ..+++..|||+.+|+|+.||++.+.
T Consensus 30 ~~~r~~Il~~L----~~~~~~~eLa~~l~is~~tv~~~L~ 65 (96)
T 1y0u_A 30 NPVRRKILRML----DKGRSEEEIMQTLSLSKKQLDYHLK 65 (96)
T ss_dssp CHHHHHHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHH----cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 56666677654 2569999999999999999976544
No 114
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=80.93 E-value=4.4 Score=34.06 Aligned_cols=41 Identities=12% Similarity=0.126 Sum_probs=33.4
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..|+..-+. ..+.|..|||+.+|+|+++|.+.+.+
T Consensus 28 ~l~~~~~~iL~~l~~--~~~~~~~ela~~l~is~~~vs~~l~~ 68 (142)
T 3bdd_A 28 GISLTRYSILQTLLK--DAPLHQLALQERLQIDRAAVTRHLKL 68 (142)
T ss_dssp SSCHHHHHHHHHHHH--HCSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh--CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 589999988877541 35799999999999999999765543
No 115
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=80.90 E-value=3.9 Score=33.55 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 438 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 438 ~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
++....|+..-. ..+.+..|||+.+|+|+++|++.+.+
T Consensus 20 ~~~r~~IL~~L~---~~~~~~~ela~~l~is~~tv~~~l~~ 57 (114)
T 2oqg_A 20 DETRWEILTELG---RADQSASSLATRLPVSRQAIAKHLNA 57 (114)
T ss_dssp CHHHHHHHHHHH---HSCBCHHHHHHHSSSCHHHHHHHHHH
T ss_pred ChHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 466666776543 46799999999999999999766543
No 116
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=80.74 E-value=6.3 Score=34.06 Aligned_cols=41 Identities=12% Similarity=0.087 Sum_probs=34.1
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.|..||..-+. ..+.|..|||+.+|+++++|.+++.+
T Consensus 46 ~lt~~~~~iL~~l~~--~~~~t~~ela~~l~is~~tvs~~l~~ 86 (162)
T 2fa5_A 46 GMAIPEWRVITILAL--YPGSSASEVSDRTAMDKVAVSRAVAR 86 (162)
T ss_dssp CCCHHHHHHHHHHHH--STTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh--CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 699999998877652 46899999999999999999766554
No 117
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=80.69 E-value=2 Score=36.45 Aligned_cols=45 Identities=18% Similarity=0.127 Sum_probs=32.6
Q ss_pred hCCHHHH-HHHHHHhcCCCCCCC-HHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010835 436 TLGERER-EIIRLYYGLDKECLT-WEDISKRIGLSRERVRQVGLVALEKL 483 (499)
Q Consensus 436 ~L~~rER-~VI~LryGLd~eg~S-leEIAe~LgIS~~rVrqi~~rALkKL 483 (499)
.+++.++ +|+.+++ ..|.+ ..+||+.|||+++||++++...-..+
T Consensus 7 ~~t~e~K~~iv~~~~---~~g~~~~~~~A~~~gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 7 QLTFREKSRIIQEVE---ENPDLRKGEIARRFNIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp CCCHHHHHHHHHHHH---HCTTSCHHHHHHHHTCCHHHHHHHHHTHHHHH
T ss_pred eCCHHHHHHHHHHHH---HCCCCcHHHHHHHhCCCHHHHHHHHhchhhhc
Confidence 4677766 4666664 34554 55999999999999999987655443
No 118
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=80.65 E-value=3.8 Score=32.08 Aligned_cols=24 Identities=13% Similarity=0.088 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
.+.|..|||+.+|+|+.+|++.+.
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~ 36 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLL 36 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 569999999999999999975544
No 119
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=80.53 E-value=1.5 Score=31.99 Aligned_cols=26 Identities=12% Similarity=0.258 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..++|.+++|+.+|+|+.+|+++++.
T Consensus 12 ~~g~s~~~lA~~~gis~~~i~~~e~g 37 (66)
T 2xi8_A 12 KKKISQSELAALLEVSRQTINGIEKN 37 (66)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35799999999999999999998863
No 120
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=80.51 E-value=1.7 Score=33.87 Aligned_cols=26 Identities=4% Similarity=0.276 Sum_probs=23.8
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..++|++++|+.+|||+.+|+++++-
T Consensus 21 ~~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 21 EKGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 46799999999999999999999875
No 121
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=80.43 E-value=1.7 Score=32.26 Aligned_cols=26 Identities=8% Similarity=0.225 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..++|+.++|+.+|||+.+|+++++.
T Consensus 14 ~~glsq~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 14 ALKMTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 35799999999999999999998763
No 122
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=80.34 E-value=2.8 Score=35.22 Aligned_cols=41 Identities=2% Similarity=0.024 Sum_probs=33.2
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..|+..-+. ..+.|..|||+.+|+++++|.+.+.+
T Consensus 26 ~l~~~~~~iL~~l~~--~~~~~~~ela~~l~~s~~tvs~~l~~ 66 (138)
T 3bpv_A 26 NLTDAQVACLLRIHR--EPGIKQDELATFFHVDKGTIARTLRR 66 (138)
T ss_dssp TCCHHHHHHHHHHHH--STTCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 588888888877552 36799999999999999999765544
No 123
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=80.29 E-value=1.8 Score=32.00 Aligned_cols=26 Identities=12% Similarity=0.298 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..++|+.++|+.+|||+.+|+++++.
T Consensus 12 ~~glsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 12 QLGLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35799999999999999999998754
No 124
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=79.89 E-value=5.4 Score=34.28 Aligned_cols=41 Identities=10% Similarity=0.105 Sum_probs=34.0
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.|..||..-+. .++.|..|||+.+|+++++|.+.+.+
T Consensus 38 ~lt~~q~~iL~~l~~--~~~~~~~eLa~~l~~~~~~vs~~l~~ 78 (149)
T 4hbl_A 38 GITYSQYLVMLTLWE--ENPQTLNSIGRHLDLSSNTLTPMLKR 78 (149)
T ss_dssp TCCHHHHHHHHHHHH--SSSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 689999998877542 46899999999999999999766554
No 125
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=79.63 E-value=3.9 Score=34.83 Aligned_cols=41 Identities=12% Similarity=0.049 Sum_probs=33.7
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.|..|+..-+. .++.|..|||+.+++++++|.+.+.+
T Consensus 33 glt~~q~~vL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~ 73 (140)
T 3hsr_A 33 DLTYTGYIVLMAIEN--DEKLNIKKLGERVFLDSGTLTPLLKK 73 (140)
T ss_dssp TCCHHHHHHHHHSCT--TCEEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 699999988877542 46799999999999999999766554
No 126
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=79.40 E-value=3.8 Score=34.38 Aligned_cols=41 Identities=5% Similarity=-0.044 Sum_probs=33.2
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..|+..-+. .++.|..|||+.+|+++++|.+.+.+
T Consensus 35 ~l~~~~~~iL~~l~~--~~~~t~~ela~~l~~~~~tvs~~l~~ 75 (140)
T 2nnn_A 35 GLTPTQWAALVRLGE--TGPCPQNQLGRLTAMDAATIKGVVER 75 (140)
T ss_dssp CCCHHHHHHHHHHHH--HSSBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 689999988877541 35899999999999999999765543
No 127
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=79.08 E-value=2.1 Score=32.13 Aligned_cols=26 Identities=27% Similarity=0.188 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..|+|..++|+.+|+|+.+|+++++.
T Consensus 24 ~~g~s~~~lA~~~gis~~~i~~~e~g 49 (74)
T 1y7y_A 24 AKGLSQETLAFLSGLDRSYVGGVERG 49 (74)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 35799999999999999999998764
No 128
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=79.07 E-value=5.3 Score=34.24 Aligned_cols=41 Identities=15% Similarity=0.169 Sum_probs=33.7
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..|+..-+. ..+.|..+||+.+|+++++|.+++.+
T Consensus 38 ~lt~~~~~iL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~ 78 (154)
T 2qww_A 38 GLTIQQLAMINVIYS--TPGISVADLTKRLIITGSSAAANVDG 78 (154)
T ss_dssp TCCHHHHHHHHHHHH--STTEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 699999988877552 35799999999999999999766554
No 129
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=78.71 E-value=2 Score=34.87 Aligned_cols=26 Identities=12% Similarity=0.305 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..++|+.|+|+.+|||+.+|+++++-
T Consensus 35 ~~glTq~eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 35 DRDMKKGELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 46799999999999999999998864
No 130
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=78.67 E-value=2.4 Score=32.14 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..|+|+.++|+.+|||+++|+++++.
T Consensus 18 ~~g~sq~~lA~~~gis~~~i~~~e~g 43 (78)
T 3b7h_A 18 QQNLTINRVATLAGLNQSTVNAMFEG 43 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHCT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 46799999999999999999998864
No 131
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=78.66 E-value=1.7 Score=31.93 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.++|+.++|+.+|+|+.+|+++++.
T Consensus 17 ~g~s~~~lA~~~gis~~~i~~~e~g 41 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSNVAISQWERS 41 (68)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 4699999999999999999998863
No 132
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=78.65 E-value=5.8 Score=33.75 Aligned_cols=41 Identities=10% Similarity=0.044 Sum_probs=33.6
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..||..-+. ..+.|..|||+.+|+++++|.+.+.+
T Consensus 39 ~l~~~~~~iL~~l~~--~~~~t~~ela~~l~~~~~tvs~~l~~ 79 (150)
T 2rdp_A 39 PITPPQFVALQWLLE--EGDLTVGELSNKMYLACSTTTDLVDR 79 (150)
T ss_dssp SSCHHHHHHHHHHHH--HCSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCchhHHHHHHH
Confidence 689999988877542 35799999999999999999776554
No 133
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=78.61 E-value=6.1 Score=33.09 Aligned_cols=51 Identities=8% Similarity=0.116 Sum_probs=37.5
Q ss_pred HHHHHHHHH-hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 426 KDEVNKLII-VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 426 ~~~L~~~L~-~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
...+...+. ..|++.+..|+..-+. ..+.|..+||+.+|+++++|.+.+.+
T Consensus 20 ~~~~~~~~~~~~lt~~~~~iL~~l~~--~~~~~~~~la~~l~~~~~tvs~~l~~ 71 (138)
T 1jgs_A 20 DRLLNEYLSPLDITAAQFKVLCSIRC--AACITPVELKKVLSVDLGALTRMLDR 71 (138)
T ss_dssp HHHHHHHHTTTTSCHHHHHHHHHHHH--HSSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHh--cCCCCHHHHHHHHCCChHHHHHHHHH
Confidence 334444441 2589999988877552 35799999999999999999766554
No 134
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=78.55 E-value=7.4 Score=33.43 Aligned_cols=41 Identities=10% Similarity=0.113 Sum_probs=33.7
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..||..-+. .++.|..+||+.+|+++++|.+.+.+
T Consensus 40 ~lt~~~~~iL~~l~~--~~~~t~~ela~~l~i~~~tvs~~l~~ 80 (155)
T 3cdh_A 40 GLRVPEWRVLACLVD--NDAMMITRLAKLSLMEQSRMTRIVDQ 80 (155)
T ss_dssp TCCHHHHHHHHHHSS--CSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 699999998877651 35799999999999999999766544
No 135
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=78.55 E-value=2.2 Score=32.36 Aligned_cols=26 Identities=19% Similarity=0.308 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..|+|+.++|+.+|||+.+|+++++.
T Consensus 21 ~~glsq~~lA~~~gis~~~i~~~e~g 46 (77)
T 2b5a_A 21 QKGVSQEELADLAGLHRTYISEVERG 46 (77)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHCC
Confidence 35799999999999999999998863
No 136
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=78.53 E-value=2.2 Score=36.63 Aligned_cols=26 Identities=15% Similarity=0.159 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..+.|..+||+.+|+|+++|++.+.+
T Consensus 20 ~~~~~~~ela~~l~vs~~tvs~~l~~ 45 (142)
T 1on2_A 20 KGYARVSDIAEALAVHPSSVTKMVQK 45 (142)
T ss_dssp HSSCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 36799999999999999999765543
No 137
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=78.52 E-value=3.3 Score=35.33 Aligned_cols=41 Identities=22% Similarity=0.251 Sum_probs=33.1
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..|+..-+. ..+.|..|||+.+|+++++|.+.+.+
T Consensus 37 ~l~~~~~~iL~~l~~--~~~~t~~ela~~l~~~~~tvs~~l~~ 77 (148)
T 3nrv_A 37 GIGMTEWRIISVLSS--ASDCSVQKISDILGLDKAAVSRTVKK 77 (148)
T ss_dssp TCCHHHHHHHHHHHH--SSSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 588888888877542 35899999999999999999766554
No 138
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=78.52 E-value=1.3 Score=34.36 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|+|+.++|+.+|||+.+|+++++.
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e~g 48 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALFNG 48 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 4699999999999999999998763
No 139
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=78.48 E-value=1.6 Score=33.77 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..|+|++|+|+.+|||+.+|+++++-
T Consensus 25 ~~gltq~elA~~~gis~~~is~~e~g 50 (83)
T 3f6w_A 25 AAGITQKELAARLGRPQSFVSKTENA 50 (83)
T ss_dssp HHTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 35799999999999999999999863
No 140
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=78.04 E-value=1.8 Score=33.29 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.++|++++|+.+|||+.+|+++++.
T Consensus 14 ~glsq~~lA~~~gis~~~i~~~e~g 38 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISRQQLCNIEQS 38 (77)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5799999999999999999998863
No 141
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=77.89 E-value=2.7 Score=32.74 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..|+|+.++|+.+|||+.+|+++++.
T Consensus 23 ~~glsq~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 23 QNGWTQSELAKKIGIKQATISNFENN 48 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 35799999999999999999999874
No 142
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=77.82 E-value=5.2 Score=34.72 Aligned_cols=52 Identities=17% Similarity=0.067 Sum_probs=37.2
Q ss_pred HHHHHHHH-hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 427 DEVNKLII-VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 427 ~~L~~~L~-~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..+...+. ..|+..|-.|+.+-+.-...++|..|||+.+++++++|.+++.+
T Consensus 22 ~~~~~~l~~~gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~ 74 (147)
T 4b8x_A 22 GEVDAVVKPYGLTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDR 74 (147)
T ss_dssp HHHHHHHGGGTCCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 34444441 25899999888765421224589999999999999999766554
No 143
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=77.77 E-value=1.9 Score=33.86 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..|+|+.++|+.+|||+++|++++.+
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTTTS
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 36899999999999999999988765
No 144
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=77.71 E-value=4.2 Score=34.53 Aligned_cols=41 Identities=10% Similarity=0.070 Sum_probs=33.6
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.|..|+..-+. ..+.|..|||+.+|+++++|.+.+.+
T Consensus 34 ~lt~~~~~iL~~l~~--~~~~t~~eLa~~l~~~~~~vs~~l~~ 74 (143)
T 3oop_A 34 DVTPEQWSVLEGIEA--NEPISQKEIALWTKKDTPTVNRIVDV 74 (143)
T ss_dssp SSCHHHHHHHHHHHH--HSSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCcCHHHHHHHHCCCHhhHHHHHHH
Confidence 589999998877541 36899999999999999999766554
No 145
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=77.59 E-value=2.1 Score=33.90 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..|+|++|+|+.+|||+.+|+++++-
T Consensus 25 ~~gltq~elA~~~gis~~~is~~E~G 50 (86)
T 3eus_A 25 DAGLTQADLAERLDKPQSFVAKVETR 50 (86)
T ss_dssp HTTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 46799999999999999999999863
No 146
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=77.30 E-value=1.6 Score=33.56 Aligned_cols=25 Identities=16% Similarity=0.019 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.++|.+|+|+.+|||+.+|++++.-
T Consensus 23 ~gltq~elA~~~gvs~~tis~~E~G 47 (73)
T 3fmy_A 23 LSLTQKEASEIFGGGVNAFSRYEKG 47 (73)
T ss_dssp TTCCHHHHHHHHCSCTTHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 4799999999999999999999864
No 147
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=77.28 E-value=2.2 Score=35.60 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
..|+|++|+|+.+|||+.+|+++++
T Consensus 47 ~~glTQ~eLA~~~gvs~~~is~~E~ 71 (101)
T 4ghj_A 47 NRDLTQSEVAEIAGIARKTVLNAEK 71 (101)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHcCCCHHHHHHHHC
Confidence 4689999999999999999999985
No 148
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=77.15 E-value=3.3 Score=35.05 Aligned_cols=41 Identities=12% Similarity=0.111 Sum_probs=33.2
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..|+..-+. ..+.|..+||+.+|+++++|.+.+.+
T Consensus 30 ~l~~~~~~iL~~l~~--~~~~~~~~la~~l~~s~~tvs~~l~~ 70 (145)
T 2a61_A 30 GITPAQFDILQKIYF--EGPKRPGELSVLLGVAKSTVTGLVKR 70 (145)
T ss_dssp TCCHHHHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCchhHHHHHHH
Confidence 589999888877552 35799999999999999999765544
No 149
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=77.05 E-value=2.5 Score=32.72 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..++|++++|+.+|||+.+|+++++-
T Consensus 22 ~~glsq~~lA~~~gis~~~i~~~e~g 47 (82)
T 3s8q_A 22 EKGMTQEDLAYKSNLDRTYISGIERN 47 (82)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 35799999999999999999999864
No 150
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=77.04 E-value=1.6 Score=33.07 Aligned_cols=25 Identities=8% Similarity=-0.077 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|+|++++|+.+|||+.+|+++++.
T Consensus 20 ~glsq~~lA~~~gis~~~is~~e~g 44 (73)
T 3omt_A 20 KGKTNLWLTETLDKNKTTVSKWCTN 44 (73)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4699999999999999999999864
No 151
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=76.99 E-value=4.8 Score=34.52 Aligned_cols=42 Identities=10% Similarity=0.065 Sum_probs=33.9
Q ss_pred hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..|++.+..||..-+. ..+.|..+||+.+|+++++|.+.+.+
T Consensus 33 ~~l~~~~~~iL~~l~~--~~~~t~~ela~~l~~s~~tvs~~l~~ 74 (155)
T 1s3j_A 33 QGVTPAQLFVLASLKK--HGSLKVSEIAERMEVKPSAVTLMADR 74 (155)
T ss_dssp TTCCHHHHHHHHHHHH--HSEEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3799999998877551 35799999999999999999765544
No 152
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=76.88 E-value=6.2 Score=33.46 Aligned_cols=40 Identities=8% Similarity=-0.002 Sum_probs=32.4
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..||..-+. ..+ |..+||+.+|+++++|.+.+.+
T Consensus 34 ~lt~~~~~iL~~l~~--~~~-~~~~la~~l~~~~~tvs~~l~~ 73 (144)
T 3f3x_A 34 NLSYLDFSILKATSE--EPR-SMVYLANRYFVTQSAITAAVDK 73 (144)
T ss_dssp SCCHHHHHHHHHHHH--SCE-EHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCC-CHHHHHHHHCCChhHHHHHHHH
Confidence 689999998887652 234 9999999999999999766554
No 153
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=76.75 E-value=2.8 Score=33.57 Aligned_cols=26 Identities=27% Similarity=0.152 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..++|+.++|+.+|||+.+|++++..
T Consensus 20 ~~glsq~~lA~~~gis~~~is~~e~G 45 (94)
T 2kpj_A 20 KSEKTQLEIAKSIGVSPQTFNTWCKG 45 (94)
T ss_dssp TSSSCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHhC
Confidence 46799999999999999999999864
No 154
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=76.66 E-value=3.5 Score=32.62 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..++|++|+|+.+|||+.+|+++++-
T Consensus 24 ~~glsq~~lA~~~gis~~~is~~e~g 49 (91)
T 1x57_A 24 SKGLTQKDLATKINEKPQVIADYESG 49 (91)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 46799999999999999999999873
No 155
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=76.66 E-value=4.7 Score=32.16 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
+..|..+||++||+++..|.+.+.+
T Consensus 28 ~~~Ta~~IAkkLg~sK~~vNr~LY~ 52 (75)
T 1sfu_A 28 DYTTAISLSNRLKINKKKINQQLYK 52 (75)
T ss_dssp CEECHHHHHHHTTCCHHHHHHHHHH
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHH
Confidence 3489999999999998887655554
No 156
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=76.60 E-value=2.3 Score=38.56 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=25.5
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 443 EIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 443 ~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
.|+.++ .+|+|..+||+.||+|++||.+++.
T Consensus 150 ~i~~~~----~~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 150 AVLNMW----QQGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp HHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHH----HCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 355554 3789999999999999999987764
No 157
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=76.24 E-value=2.1 Score=32.21 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.++|+.++|+.+|+|+.+|+++++.
T Consensus 17 ~gls~~~lA~~~gis~~~i~~~e~g 41 (76)
T 1adr_A 17 LKIRQAALGKMVGVSNVAISQWERS 41 (76)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4699999999999999999998763
No 158
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=76.18 E-value=2.1 Score=39.77 Aligned_cols=32 Identities=16% Similarity=0.346 Sum_probs=26.1
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 442 REIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 442 R~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
+.|+.++. +|+|..+||+.||+|+.||.+++.
T Consensus 166 ~~i~~~~~----~G~s~~~Ia~~l~is~~tv~r~l~ 197 (209)
T 2r0q_C 166 HRVVEMLE----EGQAISKIAKEVNITRQTVYRIKH 197 (209)
T ss_dssp HHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHh
Confidence 44666654 789999999999999999987654
No 159
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=76.12 E-value=3.2 Score=32.41 Aligned_cols=42 Identities=12% Similarity=0.309 Sum_probs=33.5
Q ss_pred hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHC----CCHHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLDKECLTWEDISKRIG----LSRERVRQVGLV 478 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd~eg~SleEIAe~Lg----IS~~rVrqi~~r 478 (499)
..|++.|..|+..-+. .++.|..||++.++ +++.||...+.+
T Consensus 5 ~~lt~~e~~vL~~L~~--~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~r 50 (82)
T 1p6r_A 5 PQISDAELEVMKVIWK--HSSINTNEVIKELSKTSTWSPKTIQTMLLR 50 (82)
T ss_dssp CCCCHHHHHHHHHHHT--SSSEEHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc--CCCCCHHHHHHHHhhcCCccHHHHHHHHHH
Confidence 4689999999887652 35799999999997 799999766554
No 160
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=76.06 E-value=3.2 Score=35.72 Aligned_cols=41 Identities=10% Similarity=0.101 Sum_probs=33.4
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..|+..-+. .++.|..|||+.+|+++++|.+++.+
T Consensus 44 ~l~~~~~~iL~~l~~--~~~~t~~ela~~l~~s~~tvs~~l~~ 84 (153)
T 2pex_A 44 DLTYPQYLVMLVLWE--TDERSVSEIGERLYLDSATLTPLLKR 84 (153)
T ss_dssp TCCHHHHHHHHHHHH--SCSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh--CCCcCHHHHHHHhCCCcccHHHHHHH
Confidence 688888888876542 36799999999999999999766554
No 161
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=76.02 E-value=5 Score=34.45 Aligned_cols=40 Identities=15% Similarity=0.268 Sum_probs=33.7
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.|..|+..-. .++.|..|||+.+|+++++|.+.+.+
T Consensus 35 ~lt~~q~~iL~~l~---~~~~t~~eLa~~l~~~~~~vs~~l~~ 74 (151)
T 3kp7_A 35 GISAEQSHVLNMLS---IEALTVGQITEKQGVNKAAVSRRVKK 74 (151)
T ss_dssp TCCHHHHHHHHHHH---HSCBCHHHHHHHHCSCSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---cCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 68999998887653 68999999999999999999766554
No 162
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=76.00 E-value=2.7 Score=32.33 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|+|+.++|+.+|||+.+|+++++-
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~g 46 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIESF 46 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5799999999999999999998863
No 163
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=75.98 E-value=3.6 Score=34.71 Aligned_cols=37 Identities=14% Similarity=0.116 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 438 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 438 ~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
++....||.+-. ..+.+..|||+.+|+|+++|++.+.
T Consensus 20 ~~~r~~IL~~L~---~~~~~~~eLa~~lgis~stvs~~L~ 56 (118)
T 2jsc_A 20 DPTRCRILVALL---DGVCYPGQLAAHLGLTRSNVSNHLS 56 (118)
T ss_dssp SHHHHHHHHHHH---TTCCSTTTHHHHHSSCHHHHHHHHH
T ss_pred CHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 566667777644 3578999999999999999976654
No 164
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=75.88 E-value=3.2 Score=36.08 Aligned_cols=41 Identities=7% Similarity=-0.001 Sum_probs=33.6
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..||..-+. ..+.|..|||+.+|+++++|.+.+.+
T Consensus 49 ~lt~~~~~iL~~l~~--~~~~t~~ela~~l~is~~tvs~~l~~ 89 (162)
T 3cjn_A 49 GLSTAKMRALAILSA--KDGLPIGTLGIFAVVEQSTLSRALDG 89 (162)
T ss_dssp TCCHHHHHHHHHHHH--SCSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCCCCHHHHHHHHCCChhHHHHHHHH
Confidence 589999998877552 35799999999999999999766544
No 165
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=75.73 E-value=4.1 Score=29.98 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHH-----CCCHHHHHHHHH
Q 010835 453 KECLTWEDISKRI-----GLSRERVRQVGL 477 (499)
Q Consensus 453 ~eg~SleEIAe~L-----gIS~~rVrqi~~ 477 (499)
....|.+||++.| +||..||++.+.
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 3579999999999 999999987776
No 166
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=75.68 E-value=3.4 Score=35.37 Aligned_cols=41 Identities=10% Similarity=0.054 Sum_probs=33.4
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..|+..-+. ..+.|..+||+.+|+++++|.+.+.+
T Consensus 37 ~lt~~~~~iL~~l~~--~~~~t~~ela~~l~~~~~~vs~~l~~ 77 (152)
T 3bj6_A 37 GVTVGQRAILEGLSL--TPGATAPQLGAALQMKRQYISRILQE 77 (152)
T ss_dssp TCCHHHHHHHHHHHH--STTEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh--CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 689999888877552 35799999999999999999765544
No 167
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=75.65 E-value=2.5 Score=31.85 Aligned_cols=26 Identities=12% Similarity=0.058 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..|+|..++|+.+|+|+.+|+++++.
T Consensus 21 ~~g~s~~~lA~~~gis~~~i~~~e~g 46 (76)
T 3bs3_A 21 EKQRTNRWLAEQMGKSENTISRWCSN 46 (76)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35799999999999999999998863
No 168
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=75.61 E-value=4.3 Score=35.27 Aligned_cols=41 Identities=10% Similarity=0.184 Sum_probs=33.5
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.|..||..-+. .++.|..|||+.+|+++++|.+++.+
T Consensus 47 ~lt~~q~~vL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~ 87 (159)
T 3s2w_A 47 GIGSGQFPFLMRLYR--EDGINQESLSDYLKIDKGTTARAIQK 87 (159)
T ss_dssp TCCTTTHHHHHHHHH--SCSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 588888888876542 46799999999999999999766554
No 169
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=75.55 E-value=1.9 Score=34.81 Aligned_cols=42 Identities=14% Similarity=0.061 Sum_probs=32.0
Q ss_pred hCCHHHHHHHHHHhcCCCCC---CCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKEC---LTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg---~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++++..||...+.- .++ .|..|||+.+|+++++|.+++.+
T Consensus 9 ~l~~~~~~iL~~l~~~-~~~~~~~t~~eLa~~l~i~~~tvs~~l~~ 53 (95)
T 2qvo_A 9 LFKEKALEILMTIYYE-SLGGNDVYIQYIASKVNSPHSYVWLIIKK 53 (95)
T ss_dssp HSCHHHHHHHHHHHHH-HHTTCCEEHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHc-cCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4888888887665421 134 89999999999999999766544
No 170
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=75.54 E-value=3.5 Score=34.84 Aligned_cols=42 Identities=7% Similarity=0.109 Sum_probs=32.7
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..|+..-+. ..++.|..+||+.+|+++++|.+.+.+
T Consensus 34 ~l~~~~~~iL~~l~~-~~~~~t~~~la~~l~~s~~~vs~~l~~ 75 (146)
T 2fbh_A 34 GLSQARWLVLLHLAR-HRDSPTQRELAQSVGVEGPTLARLLDG 75 (146)
T ss_dssp CCTTTHHHHHHHHHH-CSSCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCCHHHHHHHhCCChhhHHHHHHH
Confidence 578888888776521 246899999999999999999765544
No 171
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=75.40 E-value=3.4 Score=30.76 Aligned_cols=26 Identities=8% Similarity=0.015 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHC--CCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIG--LSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~Lg--IS~~rVrqi~~r 478 (499)
..|+|++++|+.+| +|+.+|+++++.
T Consensus 19 ~~glsq~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 19 QQGLSLHGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp HTTCCHHHHHHHTTTSSCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCCcCCHHHHHHHHCC
Confidence 35799999999999 999999999874
No 172
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=75.36 E-value=5.6 Score=35.03 Aligned_cols=41 Identities=2% Similarity=0.027 Sum_probs=33.6
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..||..-+. ..+.|..|||+.+|+++++|.+.+.+
T Consensus 42 ~lt~~~~~iL~~L~~--~~~~t~~eLa~~l~is~~tvs~~l~~ 82 (168)
T 2nyx_A 42 NITIPQFRTLVILSN--HGPINLATLATLLGVQPSATGRMVDR 82 (168)
T ss_dssp SCCHHHHHHHHHHHH--HCSEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 689999998877541 35799999999999999999766544
No 173
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=74.99 E-value=2.9 Score=35.26 Aligned_cols=41 Identities=15% Similarity=0.155 Sum_probs=33.3
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..|+..-+. ..+.|..+||+.+|+++++|.+.+.+
T Consensus 33 ~lt~~~~~iL~~l~~--~~~~t~~ela~~l~~s~~~vs~~l~~ 73 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQ--QGEMESYQLANQACILRPSMTGVLAR 73 (142)
T ss_dssp TCCHHHHHHHHHHHH--HCSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHhHHHHHHHH
Confidence 589999888877551 35799999999999999999766544
No 174
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=74.86 E-value=4.4 Score=34.04 Aligned_cols=44 Identities=7% Similarity=0.052 Sum_probs=33.3
Q ss_pred HHHHHHHhhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 428 EVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 428 ~L~~~L~~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
.+.++| =+|....||.+-. ..+++..|||+.+|+|+++|++.+.
T Consensus 10 ~~~~al---~~~~R~~Il~~L~---~~~~~~~eLa~~l~is~~tvs~hL~ 53 (118)
T 3f6o_A 10 GIFQAL---ADPTRRAVLGRLS---RGPATVSELAKPFDMALPSFMKHIH 53 (118)
T ss_dssp HHHHHH---TSHHHHHHHHHHH---TCCEEHHHHHTTCCSCHHHHHHHHH
T ss_pred HHHHHh---CCHHHHHHHHHHH---hCCCCHHHHHHHhCcCHHHHHHHHH
Confidence 344445 3666777777765 4679999999999999999986654
No 175
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=74.71 E-value=2.2 Score=34.05 Aligned_cols=24 Identities=29% Similarity=0.169 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
.+.|.+|||+.||+|..||+..+.
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~ 46 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLE 46 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHH
Confidence 457999999999999999976654
No 176
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=74.63 E-value=4.1 Score=34.66 Aligned_cols=41 Identities=15% Similarity=0.101 Sum_probs=33.2
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..||..-+. ..+.|..|||+.+|+++++|.+.+.+
T Consensus 28 ~lt~~q~~iL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~ 68 (145)
T 3g3z_A 28 DLNYNLFAVLYTLAT--EGSRTQKHIGEKWSLPKQTVSGVCKT 68 (145)
T ss_dssp TCCHHHHHHHHHHHH--HCSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 689999888877541 35799999999999999999766544
No 177
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=74.29 E-value=2.8 Score=33.98 Aligned_cols=25 Identities=24% Similarity=0.161 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
..++|++++|+.+|||+.+|+++++
T Consensus 41 ~~glsq~elA~~lgvs~~~is~~E~ 65 (99)
T 2ppx_A 41 ALKLTQEEFSARYHIPLGTLRDWEQ 65 (99)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 3579999999999999999999976
No 178
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=74.10 E-value=2.3 Score=39.04 Aligned_cols=42 Identities=19% Similarity=0.322 Sum_probs=31.2
Q ss_pred hCCHHHHHHHHHHhcC-CCCCC--CHHHHHHHHCCC-HHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGL-DKECL--TWEDISKRIGLS-RERVRQVGL 477 (499)
Q Consensus 436 ~L~~rER~VI~LryGL-d~eg~--SleEIAe~LgIS-~~rVrqi~~ 477 (499)
.|+++|+.++..---+ ...++ |..|+|+.+|++ +++|++++.
T Consensus 3 ~lt~~q~~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~ 48 (202)
T 1jhf_A 3 ALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLK 48 (202)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHH
Confidence 5788888776542211 12467 999999999999 999998865
No 179
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=73.91 E-value=8 Score=33.68 Aligned_cols=41 Identities=7% Similarity=0.046 Sum_probs=34.0
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..||..-+. ..+.|..|||+.+|+++++|.+++.+
T Consensus 43 glt~~q~~iL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~ 83 (162)
T 3k0l_A 43 EISLPQFTALSVLAA--KPNLSNAKLAERSFIKPQSANKILQD 83 (162)
T ss_dssp TCCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCGGGHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 699999998877542 36899999999999999999766554
No 180
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=73.70 E-value=9.9 Score=32.46 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=33.2
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.|..||..-+. ..+++|..|||+.+++++++|.+.+.+
T Consensus 36 glt~~q~~vL~~l~~-~~~~~t~~eLa~~l~i~~~tvs~~l~~ 77 (150)
T 3fm5_A 36 GLRVRSYSVLVLACE-QAEGVNQRGVAATMGLDPSQIVGLVDE 77 (150)
T ss_dssp TCCHHHHHHHHHHHH-STTCCCSHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCCcCHHHHHHHHCCCHhHHHHHHHH
Confidence 689999998876431 134689999999999999999866554
No 181
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=73.65 E-value=3.7 Score=35.52 Aligned_cols=41 Identities=10% Similarity=-0.056 Sum_probs=32.8
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.|..||..-+. ..+.|..|||+.+|+++.+|.+.+.+
T Consensus 41 ~lt~~~~~iL~~l~~--~~~~t~~ela~~l~is~~tvs~~l~~ 81 (154)
T 2eth_A 41 DMKTTELYAFLYVAL--FGPKKMKEIAEFLSTTKSNVTNVVDS 81 (154)
T ss_dssp HSBHHHHHHHHHHHH--HCCBCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 588888888877541 35799999999999999999765544
No 182
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=73.44 E-value=7 Score=30.73 Aligned_cols=48 Identities=15% Similarity=0.194 Sum_probs=38.3
Q ss_pred hCCHHHHHHHHHHhcCCCCC---------CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKEC---------LTWEDISKRIGLSRERVRQVGLVALEKLKHA 486 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg---------~SleEIAe~LgIS~~rVrqi~~rALkKLR~~ 486 (499)
.+++.+..+|...| ... ...++||..+|++...|+.+......|.|+.
T Consensus 14 ~ft~~Q~~~Le~~F---~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 14 QFSDRDLATLKKYW---DNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCHHHHHHHHHHH---TTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---HhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 46777888888877 333 2467899999999999999999998888763
No 183
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=73.42 E-value=2.6 Score=33.52 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 438 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 438 ~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
++....||..-.. .++.|..|||+.+|+|+++|.+++.+
T Consensus 15 ~~~~~~iL~~L~~--~~~~~~~ela~~l~is~~tvs~~l~~ 53 (100)
T 1ub9_A 15 NPVRLGIMIFLLP--RRKAPFSQIQKVLDLTPGNLDSHIRV 53 (100)
T ss_dssp SHHHHHHHHHHHH--HSEEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHh--cCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 5666777764321 35799999999999999999766543
No 184
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=73.16 E-value=2.9 Score=32.87 Aligned_cols=22 Identities=18% Similarity=0.087 Sum_probs=20.1
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q 010835 457 TWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 457 SleEIAe~LgIS~~rVrqi~~r 478 (499)
+.+++|+.||||+.+|++++..
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 5999999999999999999764
No 185
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=73.04 E-value=3.4 Score=33.90 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..++|++++|+.+|||+.+|+++++-
T Consensus 39 ~~gltq~elA~~~gis~~~is~iE~G 64 (99)
T 3g5g_A 39 EKGMTQEDLAYKSNLDRTYISGIERN 64 (99)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 35799999999999999999999864
No 186
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=72.98 E-value=3 Score=32.19 Aligned_cols=25 Identities=4% Similarity=0.092 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
.| |..++|+.+|||+.+|+++++.-
T Consensus 11 ~g-sq~~lA~~lgvs~~~is~~e~g~ 35 (79)
T 3bd1_A 11 LG-SVSALAASLGVRQSAISNWRARG 35 (79)
T ss_dssp HS-SHHHHHHHHTCCHHHHHHHHHHT
T ss_pred hC-CHHHHHHHHCCCHHHHHHHHHCC
Confidence 46 99999999999999999998753
No 187
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=72.86 E-value=3.1 Score=35.31 Aligned_cols=41 Identities=12% Similarity=0.039 Sum_probs=32.0
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..|+..-+. ..+.|..+||+.+|+|+++|.+.+.+
T Consensus 26 ~lt~~~~~iL~~l~~--~~~~t~~~la~~l~~s~~~vs~~l~~ 66 (144)
T 1lj9_A 26 SLTRGQYLYLVRVCE--NPGIIQEKIAELIKVDRTTAARAIKR 66 (144)
T ss_dssp TCTTTHHHHHHHHHH--STTEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CcCcCHHHHHHHHCCCHhHHHHHHHH
Confidence 578888887766541 35799999999999999999765544
No 188
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=72.67 E-value=3 Score=33.52 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHH-HHHHHHHH
Q 010835 439 EREREIIRLYYGLDKECLTWEDISKRIGLSRE-RVRQVGLV 478 (499)
Q Consensus 439 ~rER~VI~LryGLd~eg~SleEIAe~LgIS~~-rVrqi~~r 478 (499)
+....|+.+-.- ..+.|..+||+.||||.. .|++.+.+
T Consensus 11 ~~~~~IL~~Lk~--~g~~ta~eiA~~Lgit~~~aVr~hL~~ 49 (79)
T 1xmk_A 11 EIKEKICDYLFN--VSDSSALNLAKNIGLTKARDINAVLID 49 (79)
T ss_dssp HHHHHHHHHHHH--TCCEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred hHHHHHHHHHHH--cCCcCHHHHHHHcCCCcHHHHHHHHHH
Confidence 334445444221 457999999999999999 99877654
No 189
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=72.65 E-value=1.5 Score=33.84 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Q 010835 455 CLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 455 g~SleEIAe~LgIS~~rVrqi~~ 477 (499)
..|+.|||+..|||+.||++.++
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc
Confidence 36999999999999999998875
No 190
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=72.32 E-value=3.4 Score=35.33 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..++|++|+|+.+|||+.+|+++++-
T Consensus 51 ~~glTQ~eLA~~lGis~~~Is~iE~G 76 (120)
T 2o38_A 51 RARLSQAAAAARLGINQPKVSALRNY 76 (120)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 46799999999999999999999863
No 191
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=72.25 E-value=1.7 Score=35.89 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=22.1
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 456 LTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 456 ~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
.|..+||..+|||+.||++++.+.
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~~~ 54 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVRQH 54 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHH
Confidence 799999999999999999998764
No 192
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=72.13 E-value=5.8 Score=41.95 Aligned_cols=105 Identities=11% Similarity=0.064 Sum_probs=56.6
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhhccccccccccCCCCCCCCCCccccccccccCCCCCcchHHHHHHHHHHHHHHH
Q 010835 355 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLII 434 (499)
Q Consensus 355 gr~pt~eEIA~~Lgis~e~v~~~l~~~~~~~SLD~~~~~~~~~~e~~~l~e~i~d~~~e~~Pee~ve~~el~~~L~~~L~ 434 (499)
+...|..+||+.+|+|..+++.-+......+.-...+.. . ..+-.+.... ..... .+...
T Consensus 30 ~~~it~~eLA~~L~VS~RTIr~dI~~In~~L~~~~~I~~-----~--~~Gy~L~~~~-----~~~~~------~~~~~-- 89 (485)
T 3sqn_A 30 VPQLTAKRLAAQIQTTERTVFSDLQYIRSQLPADWSIET-----D--SSGIRLRNQG-----NAQTN------ELWSL-- 89 (485)
T ss_dssp CCSCBCGGGHHHHTSCHHHHHHHHHHHHTTCCTTEEEEE-----E--TTEEEEEEC--------CTH------HHHHH--
T ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHHHHHhcccCcEEEE-----c--CCEEEEecCc-----HHHHH------HHHHh--
Confidence 445789999999999999999877665443310000000 0 0011111111 11110 11112
Q ss_pred hhCCHHHH--HHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010835 435 VTLGERER--EIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 483 (499)
Q Consensus 435 ~~L~~rER--~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKL 483 (499)
+.+.+| .|+..-+ ..+..+..++|+.|.||++||.+-+.+..+.|
T Consensus 90 --~~~~eR~~~Il~~LL--~~~~isi~~Lae~l~VS~sTi~~DLk~i~~~L 136 (485)
T 3sqn_A 90 --FLPQSISIQLLKELL--FTKELVTTSFLSTSGVSYETLKRHIKKMNQAL 136 (485)
T ss_dssp --HGGGSHHHHHHHHHH--HCSEEEHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred --cCHHHHHHHHHHHHH--hCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 233333 3333222 13589999999999999999976655554444
No 193
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=72.06 E-value=7.9 Score=35.01 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=30.4
Q ss_pred hhCCHHHHHHHHHH--hcC----CCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 435 VTLGEREREIIRLY--YGL----DKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 435 ~~L~~rER~VI~Lr--yGL----d~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.++++..+.-..+. -++ +.+++|..|||+.||||++|+.++...
T Consensus 22 r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 22 QKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 45666655544321 121 123799999999999999999998773
No 194
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=71.89 E-value=9.5 Score=31.26 Aligned_cols=24 Identities=17% Similarity=0.015 Sum_probs=21.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhh
Q 010835 358 PSVDRIAEYLNMSQKKVRNATEAI 381 (499)
Q Consensus 358 pt~eEIA~~Lgis~e~v~~~l~~~ 381 (499)
.+..+||+.+|++...|...+...
T Consensus 34 ~s~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 34 IRPCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 478899999999999999887765
No 195
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=71.78 E-value=4.2 Score=30.13 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=20.9
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVG 476 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~ 476 (499)
..+ |+.++|+.+|+|+++|++++
T Consensus 12 ~~g-s~~~~A~~lgis~~~vs~~~ 34 (67)
T 2pij_A 12 EHG-TQSALAAALGVNQSAISQMV 34 (67)
T ss_dssp HTC-CHHHHHHHHTSCHHHHHHHH
T ss_pred HcC-CHHHHHHHHCcCHHHHHHHH
Confidence 356 99999999999999999987
No 196
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=71.45 E-value=4.8 Score=32.09 Aligned_cols=50 Identities=16% Similarity=0.144 Sum_probs=38.4
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
..++.|..+|.-.|-.+ ......++||+.+|+|...|..+......+.|+
T Consensus 9 kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk 60 (76)
T 2ecc_A 9 RKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKH 60 (76)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHH
Confidence 45666777777666322 234568899999999999999999999888876
No 197
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=71.37 E-value=4.8 Score=38.83 Aligned_cols=41 Identities=10% Similarity=0.142 Sum_probs=33.5
Q ss_pred hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
..|++.+..||..-.. ..+.|..|||+.+|++++||.+++.
T Consensus 148 ~~L~~~~~~IL~~L~~--~~~~s~~eLA~~lglsksTv~r~L~ 188 (244)
T 2wte_A 148 RDYSREEMKLLNVLYE--TKGTGITELAKMLDKSEKTLINKIA 188 (244)
T ss_dssp SCCCHHHHHHHHHHHH--HTCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 5799999999987431 3689999999999999999965544
No 198
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=70.98 E-value=7.1 Score=33.01 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=29.6
Q ss_pred CHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 438 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 438 ~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
++....||.+-.. ..++|..|||+.+|+|+++|++++..
T Consensus 41 ~~~rl~IL~~L~~--~~~~s~~eLa~~l~is~stvs~~L~~ 79 (122)
T 1u2w_A 41 DENRAKITYALCQ--DEELCVCDIANILGVTIANASHHLRT 79 (122)
T ss_dssp SHHHHHHHHHHHH--SSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 5666677765431 35799999999999999999876653
No 199
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=70.70 E-value=2.9 Score=32.99 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|+|++++|+.+|||+.+|+++++.
T Consensus 29 ~glsq~~lA~~~gis~~~is~~e~g 53 (92)
T 1lmb_3 29 LGLSQESVADKMGMGQSGVGALFNG 53 (92)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4699999999999999999999864
No 200
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=70.47 E-value=6.4 Score=31.31 Aligned_cols=25 Identities=8% Similarity=0.048 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
...+..|||+.||||..|||+-+..
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~ 39 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQ 39 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 5689999999999999999876654
No 201
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=70.40 E-value=4.8 Score=35.35 Aligned_cols=43 Identities=14% Similarity=0.141 Sum_probs=31.2
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.|..||..-+..+.++.|..|||+.+++++++|.+.+.+
T Consensus 43 glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~ 85 (168)
T 3u2r_A 43 ELSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDR 85 (168)
T ss_dssp TCCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 6899999988775521135899999999999999999766554
No 202
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=70.40 E-value=5 Score=33.92 Aligned_cols=30 Identities=10% Similarity=0.067 Sum_probs=26.0
Q ss_pred HHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 446 RLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 446 ~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.+|- ..|+|++|+|+.+|||+.+|++++.-
T Consensus 14 ~~R~---~~glSq~eLA~~~gis~~~is~iE~G 43 (112)
T 2wus_R 14 KKRE---ERRITLLDASLFTNINPSKLKRIEEG 43 (112)
T ss_dssp HHHH---TTTCCHHHHHHHSSCCHHHHHHHHHT
T ss_pred HHHH---HcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 3455 57899999999999999999999974
No 203
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=70.21 E-value=5 Score=36.63 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 438 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 438 ~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
.++.+.|+.+-.. +..+.|..|||+.||||+.||++.+.
T Consensus 20 ~~R~~~Il~~L~~-~~~~~s~~eLa~~l~vS~~Ti~rdi~ 58 (187)
T 1j5y_A 20 QERLKSIVRILER-SKEPVSGAQLAEELSVSRQVIVQDIA 58 (187)
T ss_dssp HHHHHHHHHHHHH-CSSCBCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3566667665320 12359999999999999999987665
No 204
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=70.01 E-value=2.4 Score=31.71 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=19.8
Q ss_pred CCHHHHHHHHCCCHHHHHHHH
Q 010835 456 LTWEDISKRIGLSRERVRQVG 476 (499)
Q Consensus 456 ~SleEIAe~LgIS~~rVrqi~ 476 (499)
.|..++|+.+|||+.+|++++
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 599999999999999999996
No 205
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=69.89 E-value=3.4 Score=34.98 Aligned_cols=43 Identities=9% Similarity=0.112 Sum_probs=33.7
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.|-.||..-+.-+.++.|..|||+.+++++++|.+.+.+
T Consensus 34 ~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~ 76 (127)
T 2frh_A 34 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKI 76 (127)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 6899999988776521126799999999999999999765543
No 206
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=69.81 E-value=4.1 Score=37.17 Aligned_cols=27 Identities=37% Similarity=0.437 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 455 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 455 g~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+|.++||..+|+|+++|+ |++++|++
T Consensus 163 ~~t~~~lA~~lG~sr~tvs----R~l~~L~~ 189 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTS----TALNSLIK 189 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 4899999999999999995 56666654
No 207
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=69.80 E-value=4 Score=36.57 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 455 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 455 g~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+|.++||..+|+|+++|. |++++|++
T Consensus 167 ~~t~~~iA~~lg~sr~tvs----R~l~~L~~ 193 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVG----RILKMLED 193 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred ccCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 5799999999999999995 66666664
No 208
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=69.69 E-value=3.8 Score=34.81 Aligned_cols=42 Identities=2% Similarity=-0.131 Sum_probs=30.8
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..||..-+. ...+.|..+||+.+|+++++|.+.+.+
T Consensus 32 ~l~~~~~~iL~~l~~-~~~~~~~~~la~~l~i~~~~vs~~l~~ 73 (147)
T 2hr3_A 32 PVQFSQLVVLGAIDR-LGGDVTPSELAAAERMRSSNLAALLRE 73 (147)
T ss_dssp HHHHHHHHHHHHHHH-TTSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCCHHHHHHHhCCChhhHHHHHHH
Confidence 356677777766541 025799999999999999999766544
No 209
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=69.69 E-value=3.7 Score=33.06 Aligned_cols=41 Identities=12% Similarity=0.124 Sum_probs=31.6
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHH----HHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDI----SKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEI----Ae~LgIS~~rVrqi~~r 478 (499)
.|++.|..||..-+. ..+.+..|| |+.+|+++++|.+.+.+
T Consensus 5 ~lt~~q~~iL~~l~~--~~~~~~~el~~~la~~l~is~~tvs~~l~~ 49 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYD--NEGIATYDLYKKVNAEFPMSTATFYDAKKF 49 (99)
T ss_dssp SSBCHHHHHHHHHTT--CTTCBHHHHHHHHHTTSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCcCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 467778888776551 357999999 89999999999766544
No 210
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=69.53 E-value=4 Score=36.46 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 455 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 455 g~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+|.++||..+|+|+++|+ |++++|++
T Consensus 164 ~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 190 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVG----RVLKSLEE 190 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 4899999999999999995 56666664
No 211
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=69.47 E-value=4.1 Score=34.67 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHhcCCCCCCCHHHHHHHH--CCCHHHHHHHHHH
Q 010835 437 LGEREREIIRLYYGLDKECLTWEDISKRI--GLSRERVRQVGLV 478 (499)
Q Consensus 437 L~~rER~VI~LryGLd~eg~SleEIAe~L--gIS~~rVrqi~~r 478 (499)
+++..+.||.+-- ....+|..+||+.+ |+|+.+|++++.+
T Consensus 11 md~~d~~IL~~L~--~~g~~s~~eLA~~l~~giS~~aVs~rL~~ 52 (111)
T 3b73_A 11 MTIWDDRILEIIH--EEGNGSPKELEDRDEIRISKSSVSRRLKK 52 (111)
T ss_dssp CCHHHHHHHHHHH--HHSCBCHHHHHTSTTCCSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH--HcCCCCHHHHHHHHhcCCCHHHHHHHHHH
Confidence 6777788887642 02479999999999 9999999877654
No 212
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=69.41 E-value=4 Score=32.50 Aligned_cols=25 Identities=0% Similarity=0.058 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.++|..++|+.+|||+.+|+++++.
T Consensus 20 ~gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 20 LNVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4699999999999999999999874
No 213
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=69.41 E-value=3.6 Score=34.23 Aligned_cols=26 Identities=23% Similarity=0.348 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..|+|++|+|+.+|||+.+|++++.-
T Consensus 32 ~~gltq~elA~~~gis~~~is~~E~G 57 (114)
T 3vk0_A 32 NKGWSQEELARQCGLDRTYVSAVERK 57 (114)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHTTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35799999999999999999998753
No 214
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=69.34 E-value=3 Score=36.66 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..|+|+.|+|+.+|||+++|+++++.
T Consensus 79 ~~glTq~elA~~lGis~s~is~~E~G 104 (141)
T 3kxa_A 79 KKGFTQSELATAAGLPQPYLSRIENS 104 (141)
T ss_dssp HTTCCHHHHHHHTTCCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 46799999999999999999999874
No 215
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=69.33 E-value=7.3 Score=28.45 Aligned_cols=50 Identities=6% Similarity=0.022 Sum_probs=37.6
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+++.+..+|...|..+ .......+||..+|++...|+.+...-..|.|+
T Consensus 3 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 3 SFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 46777888888777322 122346789999999999999999888887775
No 216
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=69.15 E-value=7.4 Score=33.92 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=32.3
Q ss_pred CHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010835 438 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEK 482 (499)
Q Consensus 438 ~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkK 482 (499)
..|.+.|... | .|.+..|+|.++|+|..+|++++.+..+.
T Consensus 80 ~~Rn~~I~~~-f----~G~n~~eLArkYgLSer~I~~Ii~~~r~~ 119 (129)
T 1rr7_A 80 LIRDLRIWND-F----NGRNVSELTTRYGVTFNTVYKAIRRMRRL 119 (129)
T ss_dssp HHHHHHHHHH-C----CSSCHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-h----CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4566777765 4 58999999999999999999998776554
No 217
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=69.09 E-value=4.4 Score=36.58 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 455 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 455 g~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+|.++||..+|+|+++|+ |++++|++
T Consensus 169 ~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 195 (220)
T 3dv8_A 169 KITHETIANHLGSHREVIT----RMLRYFQV 195 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 6899999999999999995 56666664
No 218
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=69.06 E-value=2.7 Score=35.28 Aligned_cols=41 Identities=5% Similarity=0.054 Sum_probs=33.1
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..|+..-+. ..+.|..+||+.+|+++++|.+.+.+
T Consensus 30 ~l~~~~~~iL~~l~~--~~~~~~~ela~~l~~~~~tvs~~l~~ 70 (139)
T 3bja_A 30 DISYVQFGVIQVLAK--SGKVSMSKLIENMGCVPSNMTTMIQR 70 (139)
T ss_dssp TCCHHHHHHHHHHHH--SCSEEHHHHHHHCSSCCTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCcCHHHHHHHHCCChhHHHHHHHH
Confidence 588888888877541 35799999999999999999766544
No 219
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=68.95 E-value=4.1 Score=37.44 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=26.7
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 444 IIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 444 VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
+-.+|- ..++|++|+|+.+|||+.++.++++-
T Consensus 95 lk~lR~---~~glTQ~elA~~LGvsr~tis~yE~G 126 (170)
T 2auw_A 95 FGDWMH---RNNLSLTTAAEALGISRRMVSYYRTA 126 (170)
T ss_dssp HHHHHH---HTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHH---HcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 444555 57899999999999999999998864
No 220
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=68.94 E-value=5.8 Score=34.26 Aligned_cols=42 Identities=10% Similarity=0.060 Sum_probs=33.8
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..||..-+. ..++.|..+||+.+|+++++|.+.+.+
T Consensus 44 ~l~~~~~~iL~~L~~-~~~~~~~~ela~~l~i~~~tvs~~l~~ 85 (160)
T 3boq_A 44 GLSLAKFDAMAQLAR-NPDGLSMGKLSGALKVTNGNVSGLVNR 85 (160)
T ss_dssp SCCHHHHHHHHHHHH-CTTCEEHHHHHHHCSSCCSCHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCCHHHHHHHHCCChhhHHHHHHH
Confidence 699999998877631 136899999999999999999766544
No 221
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=68.91 E-value=4.4 Score=37.04 Aligned_cols=27 Identities=37% Similarity=0.387 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 455 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 455 g~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+|.++||..+|+|+++|+ |++++|++
T Consensus 175 ~~t~~~iA~~lg~sr~tvs----R~l~~L~~ 201 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVS----RVLKRLEA 201 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 5899999999999999995 66666664
No 222
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=68.88 E-value=4.4 Score=33.47 Aligned_cols=25 Identities=12% Similarity=0.011 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|+|++++|+.+|||+.+|+++++-
T Consensus 21 ~glsq~~lA~~~gis~~~i~~~e~g 45 (114)
T 3op9_A 21 HGLKNHQIAELLNVQTRTVAYYMSG 45 (114)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999873
No 223
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=68.74 E-value=20 Score=32.55 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=32.6
Q ss_pred hhCCHHHHHHHHH-----HhcC-----C-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 435 VTLGEREREIIRL-----YYGL-----D-KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 435 ~~L~~rER~VI~L-----ryGL-----d-~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
...+..+|..-.+ .+|- . .-.+|.++||..+|+|+++|. |++++|++
T Consensus 149 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 206 (232)
T 2gau_A 149 TQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAI----RTLSTFVS 206 (232)
T ss_dssp HHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHH----HHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 3567777765433 4442 1 136899999999999999995 56666654
No 224
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=68.60 E-value=4.4 Score=36.36 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 455 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 455 g~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+|.++||..+|+|+++|. |++++|++
T Consensus 146 ~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 172 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVT----KVIGELAR 172 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 4899999999999999995 56666654
No 225
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=68.43 E-value=5.3 Score=35.29 Aligned_cols=42 Identities=10% Similarity=-0.025 Sum_probs=33.2
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.|..||..-+. ..++.|..|||+.+++++++|.+.+.+
T Consensus 50 glt~~q~~vL~~L~~-~~~~~t~~eLa~~l~i~~~tvs~~l~~ 91 (166)
T 3deu_A 50 ELTQTHWVTLHNIHQ-LPPDQSQIQLAKAIGIEQPSLVRTLDQ 91 (166)
T ss_dssp TCCHHHHHHHHHHHH-SCSSEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCCHHHHHHHHCCCHhhHHHHHHH
Confidence 689999888876541 125799999999999999999766544
No 226
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=68.42 E-value=1 Score=45.42 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 010835 437 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALE 481 (499)
Q Consensus 437 L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALk 481 (499)
+.+++..|+..-|- .++.|..|||+.||+|+.||++.+.+.-+
T Consensus 18 ~~~r~~~iL~~l~~--~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~ 60 (345)
T 2o0m_A 18 VLQERFQILRNIYW--MQPIGRRSLSETMGITERVLRTETDVLKQ 60 (345)
T ss_dssp ---------------------------------------------
T ss_pred hhHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56666666665431 57899999999999999999988776544
No 227
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=68.36 E-value=5 Score=33.51 Aligned_cols=26 Identities=12% Similarity=0.130 Sum_probs=23.2
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..|+|++++|+.+|||+.+|++++..
T Consensus 34 ~~gltq~elA~~~gis~~~is~~E~G 59 (111)
T 3mlf_A 34 DYGLTQKELGDLFKVSSRTIQNMEKD 59 (111)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHHC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 35799999999999999999999873
No 228
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=68.05 E-value=14 Score=28.04 Aligned_cols=51 Identities=16% Similarity=0.141 Sum_probs=40.2
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 486 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~ 486 (499)
.+++.+..+|...|-.+ .......+||..+|++...|..+...-..+.|+.
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 61 (68)
T 1yz8_P 9 HFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 61 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHH
Confidence 46777888888877432 2345678999999999999999999888888764
No 229
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=68.03 E-value=4.7 Score=30.22 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=18.3
Q ss_pred CCHHHHHHHHCCCHHHHHHHHH
Q 010835 456 LTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 456 ~SleEIAe~LgIS~~rVrqi~~ 477 (499)
-+..+.|+.||||+.|+...+.
T Consensus 34 gn~~~aA~~LGIsr~tL~rklk 55 (61)
T 1g2h_A 34 PSTRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp CSHHHHHHHTTSCTHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 4788999999999999976543
No 230
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=67.84 E-value=4.4 Score=34.43 Aligned_cols=41 Identities=12% Similarity=0.118 Sum_probs=32.3
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..|+..-+. .++.|..+||+.+|+++++|.+.+.+
T Consensus 37 ~l~~~~~~iL~~l~~--~~~~~~~~la~~l~~~~~tvs~~l~~ 77 (147)
T 1z91_A 37 NITYPQYLALLLLWE--HETLTVKKMGEQLYLDSGTLTPMLKR 77 (147)
T ss_dssp CCCHHHHHHHHHHHH--HSEEEHHHHHHTTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCcCcHHHHHHH
Confidence 588888888766541 35799999999999999999765544
No 231
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=67.66 E-value=16 Score=31.36 Aligned_cols=24 Identities=17% Similarity=0.026 Sum_probs=21.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhh
Q 010835 358 PSVDRIAEYLNMSQKKVRNATEAI 381 (499)
Q Consensus 358 pt~eEIA~~Lgis~e~v~~~l~~~ 381 (499)
-+..+||+.+|++...|...+...
T Consensus 49 ~s~~~iA~~lgis~~TV~rw~~~~ 72 (149)
T 1k78_A 49 VRPCDISRQLRVSHGCVSKILGRY 72 (149)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 578999999999999999888765
No 232
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=67.66 E-value=1.1 Score=41.17 Aligned_cols=35 Identities=6% Similarity=-0.019 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 441 EREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 441 ER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
-+.|+.++- +|+|..+||+.||||+.||.+++...
T Consensus 148 ~~~i~~l~~----~G~s~~~Ia~~l~vs~~Tvyr~l~~~ 182 (193)
T 3uj3_X 148 WEQAGRLLA----QGIPRKQVALIYDVALSTLYKKHPAK 182 (193)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 445666653 78999999999999999998777654
No 233
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=67.64 E-value=5.5 Score=33.09 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=33.9
Q ss_pred hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHC----CCHHHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLDKECLTWEDISKRIG----LSRERVRQVGLVA 479 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd~eg~SleEIAe~Lg----IS~~rVrqi~~rA 479 (499)
..|++.|..|+..-+- ..+.|..|||+.++ ++++||.+++.+-
T Consensus 6 ~~lt~~~~~vL~~l~~--~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L 52 (123)
T 1okr_A 6 YEISSAEWEVMNIIWM--KKYASANNIIEEIQMQKDWSPKTIRTLITRL 52 (123)
T ss_dssp CCCCHHHHHHHHHHHH--HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHh--CCCcCHHHHHHHHhccCCCcHhhHHHHHHHH
Confidence 4688888888876541 36899999999999 8999997666543
No 234
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=67.62 E-value=4.8 Score=36.68 Aligned_cols=27 Identities=44% Similarity=0.576 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 455 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 455 g~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+|.++||..+|+|+++|. |++++|++
T Consensus 177 ~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 203 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVN----KALADFAH 203 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 5899999999999999995 55666654
No 235
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=67.54 E-value=4.7 Score=36.64 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
-++|.++||..+|+|+++|+ |++++|++
T Consensus 166 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 193 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVS----VLLNDFKK 193 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred ccCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 36899999999999999995 55666654
No 236
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=67.54 E-value=5.2 Score=33.27 Aligned_cols=27 Identities=33% Similarity=0.497 Sum_probs=22.0
Q ss_pred CC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 455 CL-TWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 455 g~-SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+ |..|||+.||||+.+|+ +|+++|..
T Consensus 42 ~lps~~eLa~~lgVSr~tVr----~al~~L~~ 69 (102)
T 2b0l_A 42 GLLVASKIADRVGITRSVIV----NALRKLES 69 (102)
T ss_dssp EEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 35 99999999999999997 46666654
No 237
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=67.53 E-value=5.2 Score=32.53 Aligned_cols=26 Identities=4% Similarity=0.276 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..|+|+.++|+.+|||+.+|++++..
T Consensus 12 ~~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 12 EKGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35799999999999999999999875
No 238
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=67.53 E-value=3.1 Score=35.27 Aligned_cols=41 Identities=7% Similarity=0.111 Sum_probs=32.9
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..|+..-+. ..+.|..+||+.+|+++++|.+.+.+
T Consensus 34 ~l~~~~~~iL~~l~~--~~~~~~~ela~~l~~~~~tvs~~l~~ 74 (142)
T 2bv6_A 34 NLTYPQFLVLTILWD--ESPVNVKKVVTELALDTGTVSPLLKR 74 (142)
T ss_dssp TCCHHHHHHHHHHHH--SSEEEHHHHHHHTTCCTTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 689999888877552 35699999999999999999765543
No 239
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=67.39 E-value=4.5 Score=32.33 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.++|..++|+.+|||+.+|+++++-
T Consensus 16 ~gltq~~lA~~~gis~~~is~~e~g 40 (99)
T 2l49_A 16 EYLSRQQLADLTGVPYGTLSYYESG 40 (99)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999998863
No 240
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=67.38 E-value=4.7 Score=36.27 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
-.+|.++||..+|+|+++|. |++++|++
T Consensus 162 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 189 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVS----RVLHALAE 189 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 35899999999999999995 66666664
No 241
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=67.36 E-value=13 Score=37.08 Aligned_cols=43 Identities=14% Similarity=0.203 Sum_probs=36.8
Q ss_pred hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
+.||+.-+++-.+|. ...+.|++|+|+.++||.+.|..++.+-
T Consensus 242 ~~Lp~~L~e~a~lRl--~~pdaSL~ELge~l~isKSgVnhRlrKL 284 (295)
T 3hyi_A 242 ENLPEDLRRVALVRL--RNKELSLRELGKKLNLTKSQIYSKLKRI 284 (295)
T ss_dssp GGSCHHHHHHHHHHH--HCTTSCHHHHHHTTTCCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH--HCccccHHHHHHHhCcCHHHHHHHHHHH
Confidence 689999999999986 2467999999999999999998776543
No 242
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=67.35 E-value=9.9 Score=33.01 Aligned_cols=41 Identities=7% Similarity=-0.063 Sum_probs=33.7
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.|..||..-+. .++.|..|||+.+|+++++|.+.+.+
T Consensus 50 glt~~q~~vL~~l~~--~~~~t~~eLa~~l~~~~~~vs~~l~~ 90 (161)
T 3e6m_A 50 KLPTPKLRLLSSLSA--YGELTVGQLATLGVMEQSTTSRTVDQ 90 (161)
T ss_dssp TCCHHHHHHHHHHHH--HSEEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh--CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 699999988877541 35899999999999999999766554
No 243
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=67.17 E-value=3.8 Score=35.08 Aligned_cols=43 Identities=12% Similarity=0.174 Sum_probs=27.9
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.|..|+..-+.-+.++.|..|||+.+|+++++|.+.+.+
T Consensus 38 glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~ 80 (148)
T 3jw4_A 38 GLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQG 80 (148)
T ss_dssp TCCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHH
Confidence 6899999988775521126899999999999999999765544
No 244
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=67.09 E-value=9.6 Score=29.01 Aligned_cols=50 Identities=12% Similarity=0.290 Sum_probs=37.7
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+++.+..+|...|-.+ .......+||..+|++...|..+...-..+.|+
T Consensus 13 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk 64 (70)
T 2da1_A 13 RITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQ 64 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhh
Confidence 35666677776666322 234568899999999999999999888887765
No 245
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=66.99 E-value=8.3 Score=31.98 Aligned_cols=25 Identities=12% Similarity=0.250 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
..|+|+.|+|+.+|||+.+|+++++
T Consensus 25 ~~gltq~eLA~~lGis~~~is~ie~ 49 (104)
T 3trb_A 25 LDKMSANQLAKHLAIPTNRVTAILN 49 (104)
T ss_dssp TTSCCHHHHHHHHTSCHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHc
Confidence 4679999999999999999999987
No 246
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=66.56 E-value=5 Score=36.47 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 455 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 455 g~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
++|.++||..+|+|+++|. |++++|++
T Consensus 187 ~lt~~~lA~~lg~sr~tvs----R~l~~L~~ 213 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAG----RVLKKLQA 213 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 3799999999999999995 66666664
No 247
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=66.38 E-value=4.2 Score=36.32 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 455 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 455 g~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+|.++||..+|+|+++|. |++++|++
T Consensus 139 ~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 165 (195)
T 3b02_A 139 TVSHEEIADATASIRESVS----KVLADLRR 165 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 4899999999999999995 66666664
No 248
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=66.37 E-value=5.2 Score=37.21 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=22.7
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 455 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 455 g~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+|.++||..+|+|+++|. |++++|++
T Consensus 193 ~lt~~~lA~~lG~sr~tvs----R~l~~L~~ 219 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVT----RLLGDLRE 219 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHHCCcHHHHH----HHHHHHHH
Confidence 5899999999999999995 66666664
No 249
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=66.34 E-value=4.2 Score=35.03 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHhcCCCCCCCHHHHHHHHC-----CCHHHHHHHHH
Q 010835 437 LGEREREIIRLYYGLDKECLTWEDISKRIG-----LSRERVRQVGL 477 (499)
Q Consensus 437 L~~rER~VI~LryGLd~eg~SleEIAe~Lg-----IS~~rVrqi~~ 477 (499)
|.+|-...+...+.-+..++|++|+|+.+| +|++.++++++
T Consensus 6 ~a~RL~~L~~~~~~~~~~~lT~~elA~~~~~~G~~iS~s~is~iE~ 51 (123)
T 3qwg_A 6 FAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRS 51 (123)
T ss_dssp HHHHHHHHHHHSSCTTTCSCCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhccCCCCCCCHHHHHHHHcccCCCcCHHHHHHHHc
Confidence 344444555555543345799999999998 99999999986
No 250
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=66.20 E-value=6.6 Score=33.04 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..|+|++++|+.+|||+++|+++++-
T Consensus 23 ~~glsq~~lA~~~gis~~~is~~E~g 48 (126)
T 3ivp_A 23 KQGLTREQVGAMIEIDPRYLTNIENK 48 (126)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 36799999999999999999999864
No 251
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=66.06 E-value=5.3 Score=37.18 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 455 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 455 g~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+|.++||..+|+|+++|. |++++|++
T Consensus 177 ~~t~~~iA~~lG~sr~tvs----R~l~~L~~ 203 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVS----RVLASLKR 203 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 6899999999999999995 55666664
No 252
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=65.96 E-value=5 Score=32.77 Aligned_cols=25 Identities=8% Similarity=0.032 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
...+..|||+.||||..|||+-+.+
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~~ 39 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLER 39 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 5689999999999999999876654
No 253
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=65.78 E-value=4.9 Score=30.95 Aligned_cols=23 Identities=22% Similarity=0.203 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Q 010835 455 CLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 455 g~SleEIAe~LgIS~~rVrqi~~ 477 (499)
..|+.++|+.||||+.+|++++.
T Consensus 13 ~~sq~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 13 DKNQEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHH
T ss_pred HcCHHHHHHHhCCCHHHHHHHHH
Confidence 34999999999999999999874
No 254
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=65.62 E-value=6.2 Score=33.95 Aligned_cols=44 Identities=16% Similarity=0.129 Sum_probs=30.9
Q ss_pred hCCHHHHHHHHHHhcC-C--CCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGL-D--KECLTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 436 ~L~~rER~VI~LryGL-d--~eg~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
.|++.|-.|+..-+.. + ....|..+||+.+|+|..+|.+.+.+-
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~L 75 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRL 75 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 4777777665553322 1 233899999999999999997665543
No 255
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=65.56 E-value=7.8 Score=30.76 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 010835 355 GVTPSVDRIAEYLNMSQKKVRNATEAI 381 (499)
Q Consensus 355 gr~pt~eEIA~~Lgis~e~v~~~l~~~ 381 (499)
|..|+..|||+.+|++...|+.-+...
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~L 48 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQL 48 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 889999999999999999998877765
No 256
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=65.43 E-value=5.8 Score=35.27 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 437 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 437 L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
-+|....||.+-. ..+++..|||+.+|+|+++|++.+..
T Consensus 56 ~~p~R~~IL~~L~---~~~~t~~eLa~~lgls~stvs~hL~~ 94 (151)
T 3f6v_A 56 AEPTRRRLVQLLT---SGEQTVNNLAAHFPASRSAISQHLRV 94 (151)
T ss_dssp TSHHHHHHHHHGG---GCCEEHHHHHTTSSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4677777777654 46799999999999999999876543
No 257
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=65.40 E-value=4.6 Score=36.65 Aligned_cols=27 Identities=7% Similarity=0.153 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 455 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 455 g~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+|.++||..+|+|+++|+ |++++|++
T Consensus 178 ~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 204 (227)
T 3dkw_A 178 PVAKQLVAGHLSIQPETFS----RIMHRLGD 204 (227)
T ss_dssp CSCTHHHHHHTTSCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 5799999999999999995 66666665
No 258
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=64.91 E-value=9.1 Score=32.91 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=34.8
Q ss_pred hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHC----CCHHHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLDKECLTWEDISKRIG----LSRERVRQVGLVA 479 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd~eg~SleEIAe~Lg----IS~~rVrqi~~rA 479 (499)
..|++.|..|+..-+.. .++.|..||++.++ ++.+||...+.+-
T Consensus 5 ~~lt~~e~~vL~~L~~~-~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rL 52 (138)
T 2g9w_A 5 TRLGDLERAVMDHLWSR-TEPQTVRQVHEALSARRDLAYTTVMAVLQRL 52 (138)
T ss_dssp GGCCHHHHHHHHHHHTC-SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhc-CCCCCHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 57899999999876511 25799999999998 8999997666543
No 259
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=64.59 E-value=4.5 Score=32.91 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.++|..++|+.+|||+.+|+++++.
T Consensus 30 ~gltq~~lA~~~gis~~~is~~e~g 54 (104)
T 3cec_A 30 LDINTANFAEILGVSNQTIQEVING 54 (104)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4699999999999999999999863
No 260
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=64.42 E-value=17 Score=27.60 Aligned_cols=51 Identities=10% Similarity=0.027 Sum_probs=39.3
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 486 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~ 486 (499)
.+++.+..+|...|..+ .......+||..+|++...|..+...-..+.|+.
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 60 (68)
T 1ahd_P 8 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 60 (68)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHh
Confidence 35677777777776432 2345678999999999999999998888887764
No 261
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=64.37 E-value=6 Score=32.55 Aligned_cols=26 Identities=12% Similarity=0.075 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..|+|+.++|+.+|||+.+|+++++.
T Consensus 22 ~~glsq~~lA~~~gis~~~is~~e~g 47 (113)
T 2eby_A 22 PLDLKINELAELLHVHRNSVSALINN 47 (113)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 46899999999999999999998863
No 262
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=64.35 E-value=16 Score=28.63 Aligned_cols=54 Identities=11% Similarity=0.174 Sum_probs=40.5
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 489 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~~ 489 (499)
.+++.+..+|...|-.+ .......+||..+|++...|..+...-..|.|+.-..
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 13 SFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 46777888888877321 1123467899999999999999999888888876543
No 263
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=64.28 E-value=8.8 Score=30.06 Aligned_cols=53 Identities=9% Similarity=0.266 Sum_probs=39.1
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 488 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~ 488 (499)
.+++.+..+|...|-.+ .......+||..+|++...|..+...-..+.|+...
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 13 SFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 35666666776666321 122346789999999999999999999999887654
No 264
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=63.96 E-value=5.5 Score=30.19 Aligned_cols=24 Identities=8% Similarity=0.011 Sum_probs=21.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 456 LTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 456 ~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
++..|+|+.+|||+.||.+...+.
T Consensus 11 l~~~eva~~lgvsrstiy~~~~~g 34 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKSG 34 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCC
Confidence 789999999999999999888764
No 265
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=63.94 E-value=1.4 Score=40.48 Aligned_cols=37 Identities=5% Similarity=0.022 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010835 442 REIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEK 482 (499)
Q Consensus 442 R~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkK 482 (499)
+.|+.++ .+|+|..+||+.||+|+.||.+++......
T Consensus 149 ~~i~~l~----~~G~s~~~Ia~~l~vs~~T~yr~l~~~~~~ 185 (193)
T 3plo_X 149 EQAGRLL----AQGIPRKQVALIYDVALSTLYKKHPAKRAH 185 (193)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHH----HCCCCHHHHHHHHCcCHHHHHHHHhhhHHh
Confidence 3466664 378999999999999999998776654333
No 266
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=63.94 E-value=11 Score=32.86 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=30.5
Q ss_pred hCCHHHHHHHHHHhcCC---CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD---KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd---~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.|-.|+..-+..+ .+++|..|||+.+++++++|.+.+.+
T Consensus 30 gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~ 75 (148)
T 4fx0_A 30 GLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEV 75 (148)
T ss_dssp TCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 58888888876654221 23589999999999999999876655
No 267
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=63.81 E-value=5.9 Score=32.64 Aligned_cols=41 Identities=7% Similarity=0.092 Sum_probs=29.2
Q ss_pred hhCCHHHHH-HHHHHhcCCCCCCCHHHHHHHH-CCCHHHHHHHHHH
Q 010835 435 VTLGERERE-IIRLYYGLDKECLTWEDISKRI-GLSRERVRQVGLV 478 (499)
Q Consensus 435 ~~L~~rER~-VI~LryGLd~eg~SleEIAe~L-gIS~~rVrqi~~r 478 (499)
..|+++-+. ||..-. ..+.+..|||+.+ |+|+++|.+.+.+
T Consensus 9 ~~l~~~~~~~IL~~L~---~~~~~~~eLa~~l~~is~~tls~~L~~ 51 (107)
T 2hzt_A 9 EVIGGKWKXVILXHLT---HGKKRTSELKRLMPNITQKMLTQQLRE 51 (107)
T ss_dssp HHHCSTTHHHHHHHHT---TCCBCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred HHHcCccHHHHHHHHH---hCCCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 455666553 443333 4679999999999 9999999765543
No 268
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=63.60 E-value=9.8 Score=28.08 Aligned_cols=50 Identities=6% Similarity=-0.039 Sum_probs=37.0
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+++.+..+|...|.-+ .......+||..+|+|...|..+...-..+.|+
T Consensus 7 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 7 AFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 35677777777776321 122346789999999999999999888877765
No 269
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=63.52 E-value=6 Score=36.42 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 455 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 455 g~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+|.++||..+|+|+++|. |++++|++
T Consensus 186 ~~t~~~lA~~lG~sr~tvs----R~l~~l~~ 212 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNIS----KTLNELQD 212 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCChhHHH----HHHHHHHH
Confidence 4899999999999999995 66666654
No 270
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=63.37 E-value=9.4 Score=27.87 Aligned_cols=50 Identities=10% Similarity=0.030 Sum_probs=36.9
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+++.+..+|...|..+ .......+||..+|+|...|..+...-..+.|+
T Consensus 6 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 6 PFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 35677777777776321 122346789999999999999999888877764
No 271
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=63.36 E-value=13 Score=32.46 Aligned_cols=42 Identities=10% Similarity=-0.036 Sum_probs=31.9
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.|-.||..-+. ..++.+..|||+.+|+++++|.+.+.+
T Consensus 28 gLt~~q~~vL~~L~~-~~~~~~~~eLa~~l~~~~~tvs~~v~~ 69 (151)
T 4aik_A 28 ELTQTHWVTLYNINR-LPPEQSQIQLAKAIGIEQPSLVRTLDQ 69 (151)
T ss_dssp CCCHHHHHHHHHHHH-SCTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 578888877765431 135789999999999999999766554
No 272
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=63.23 E-value=9.3 Score=35.16 Aligned_cols=41 Identities=27% Similarity=0.063 Sum_probs=32.2
Q ss_pred hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
..|+|-|+-....++ + ..|+|.++||+.+|+|+.+|++++.
T Consensus 34 edL~piE~A~a~~~L-~-~~G~t~eeiA~~lG~s~s~V~~~Lr 74 (178)
T 1r71_A 34 NELTPREIADFIGRE-L-AKGKKKGDIAKEIGKSPAFITQHVT 74 (178)
T ss_dssp TCCCHHHHHHHHHHH-H-HTTCCHHHHHHHHTCCHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 578888877654443 1 2589999999999999999998764
No 273
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=63.17 E-value=7.7 Score=29.07 Aligned_cols=36 Identities=11% Similarity=0.029 Sum_probs=24.3
Q ss_pred HHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 440 REREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 440 rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
-|+.+|...+- ..+-+..+.|+.||||+.|+...+.
T Consensus 19 ~E~~~i~~aL~--~~~gn~~~aA~~LGisr~tL~rklk 54 (63)
T 3e7l_A 19 FEKIFIEEKLR--EYDYDLKRTAEEIGIDLSNLYRKIK 54 (63)
T ss_dssp HHHHHHHHHHH--HTTTCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHH--HhCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34554444331 2346788999999999999876554
No 274
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=62.84 E-value=7.3 Score=36.12 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCCCC-CCHHHHHHHHCCCHHHHHHHHH
Q 010835 439 EREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 439 ~rER~VI~LryGLd~eg-~SleEIAe~LgIS~~rVrqi~~ 477 (499)
+|++.|+.+-- .++ .|.+|+|+.||+|..|||+=+.
T Consensus 12 eR~~~i~~~l~---~~~~~~~~~la~~~~vs~~TiRrDl~ 48 (190)
T 4a0z_A 12 KRREAIRQQID---SNPFITDHELSDLFQVSIQTIRLDRT 48 (190)
T ss_dssp HHHHHHHHHHH---HCTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHH---HCCCEeHHHHHHHHCCCHHHHHHHHH
Confidence 45566666543 344 7999999999999999987543
No 275
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=62.76 E-value=6.9 Score=33.68 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
..|+|++|+|+.+|+|+.+++++++--
T Consensus 14 ~~gltq~elA~~~gis~~~is~iE~g~ 40 (130)
T 3fym_A 14 RLGMTLTELEQRTGIKREMLVHIENNE 40 (130)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHHTTC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHCCC
Confidence 468999999999999999999998753
No 276
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=62.33 E-value=11 Score=29.18 Aligned_cols=49 Identities=6% Similarity=0.008 Sum_probs=37.0
Q ss_pred CHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010835 438 GEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 486 (499)
Q Consensus 438 ~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~ 486 (499)
+..|..+|.-.|..+ ..+....+||..+|+|+..|+.+...-..++|+-
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 445566666665322 3345678999999999999999999999888864
No 277
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=62.30 E-value=5.3 Score=33.10 Aligned_cols=25 Identities=8% Similarity=0.094 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|+|+.++|+.+|||+.+|+++++.
T Consensus 40 ~glsq~~lA~~~gis~~~is~~E~g 64 (117)
T 3f52_A 40 KGVTLRELAEASRVSPGYLSELERG 64 (117)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 4699999999999999999999863
No 278
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=62.00 E-value=4.7 Score=30.87 Aligned_cols=53 Identities=11% Similarity=0.087 Sum_probs=39.1
Q ss_pred hCCHHHHHHHHHHhcCC-CCC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD-KEC----LTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 488 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd-~eg----~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~ 488 (499)
.+|+.+..+|.-.|--+ ..+ ..-++||..+|+|...|..+......++++.+.
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 57888888888776210 122 347789999999999999999999999886543
No 279
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=61.91 E-value=7.2 Score=33.62 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=22.2
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 454 ECL-TWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 454 eg~-SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
+.+ |..++|+.||||+.||| +|++.|..
T Consensus 36 ~~LPser~La~~~gVSr~tVR----eAl~~L~~ 64 (134)
T 4ham_A 36 EKILSIREFASRIGVNPNTVS----KAYQELER 64 (134)
T ss_dssp CEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCccHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 445 78999999999999996 56666653
No 280
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=61.73 E-value=3.9 Score=38.57 Aligned_cols=43 Identities=26% Similarity=0.265 Sum_probs=30.8
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCH--HHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTW--EDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~Sl--eEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..++..-|-|..++.+. .+||+.+|+++.+|++.+.+
T Consensus 3 ~lt~~~e~~L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~ 47 (230)
T 1fx7_A 3 ELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSR 47 (230)
T ss_dssp TTSSHHHHHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 46777777766554332246666 99999999999999765544
No 281
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=61.59 E-value=9.2 Score=28.33 Aligned_cols=50 Identities=10% Similarity=0.137 Sum_probs=36.9
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+++.+..+|...|..+ .......+||..+|++...|..+...-..+.|+
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 9 AFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 45777777887777322 122346789999999999999999887777664
No 282
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.49 E-value=11 Score=28.74 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=37.0
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 486 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~ 486 (499)
.+++.+..+|...|-.+ ......++||..+|++...|..+...-..+.|+.
T Consensus 13 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2dmu_A 13 IFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehcccccccccccc
Confidence 35666666776666221 1223467899999999999999999888887763
No 283
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=61.19 E-value=7.4 Score=31.24 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHCCCHHH----HHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRER----VRQVGLV 478 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~r----Vrqi~~r 478 (499)
.|+|++++|+.+|+|+.+ |+++++.
T Consensus 13 ~glsq~~lA~~~gis~~~~~~~is~~E~g 41 (98)
T 3lfp_A 13 AGISQEKLGVLAGIDEASASARMNQYEKG 41 (98)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCcchhhhHHHHHHCC
Confidence 579999999999999999 8888764
No 284
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=61.13 E-value=4.4 Score=37.19 Aligned_cols=27 Identities=26% Similarity=0.300 Sum_probs=21.7
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 455 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 455 g~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
++|.++||..+|+|+++|. |++++|++
T Consensus 178 ~~t~~~iA~~lg~sr~tvs----R~l~~L~~ 204 (237)
T 3fx3_A 178 PYDKMLIAGRLGMKPESLS----RAFSRLKA 204 (237)
T ss_dssp CSCTHHHHHHTTCCHHHHH----HHHHHHGG
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 5789999999999999996 55555553
No 285
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=60.90 E-value=6.1 Score=34.52 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=30.4
Q ss_pred CCHHHHHHHHHHhcCCCCCCCHHHHHHHHC-----CCHHHHHHHHH
Q 010835 437 LGEREREIIRLYYGLDKECLTWEDISKRIG-----LSRERVRQVGL 477 (499)
Q Consensus 437 L~~rER~VI~LryGLd~eg~SleEIAe~Lg-----IS~~rVrqi~~ 477 (499)
+.+|=+..+...+.-+..++|++|+|+.+| ||++.++++++
T Consensus 8 ~~~RL~~L~~~~~~~~~~~~T~~elA~~~~~~G~~is~s~is~~E~ 53 (135)
T 3r1f_A 8 FAARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRS 53 (135)
T ss_dssp HHHHHHHHHHHCCCTTSCCCCHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCCCCCCHHHHHHHHcccCCCcCHHHHHHHHC
Confidence 344545555554443446799999999999 99999999986
No 286
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=60.85 E-value=8.9 Score=35.43 Aligned_cols=41 Identities=15% Similarity=0.080 Sum_probs=33.2
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..||..-+. ..+.|..|||+.+|+++++|.+++.+
T Consensus 45 gLt~~q~~iL~~L~~--~~~~t~~eLa~~l~i~~stvs~~l~~ 85 (207)
T 2fxa_A 45 DLNINEHHILWIAYQ--LNGASISEIAKFGVMHVSTAFNFSKK 85 (207)
T ss_dssp TCCHHHHHHHHHHHH--HTSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 689999888876541 36899999999999999999765544
No 287
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=60.83 E-value=65 Score=26.15 Aligned_cols=37 Identities=22% Similarity=0.233 Sum_probs=27.1
Q ss_pred HHHHHHHHH-cCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 010835 345 RNAKLRLEE-KGVTPSVDRIAEYLNMSQKKVRNATEAI 381 (499)
Q Consensus 345 rka~~~L~~-~gr~pt~eEIA~~Lgis~e~v~~~l~~~ 381 (499)
.++...+.+ ....+++++||+.+|++...+.......
T Consensus 10 ~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 10 TEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344444443 3556899999999999999998876654
No 288
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=60.70 E-value=18 Score=27.35 Aligned_cols=53 Identities=11% Similarity=0.045 Sum_probs=40.1
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 488 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~ 488 (499)
.+++.+..+|...|..+ .......+||..+|++...|..+...-..+.|+.-.
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 8 TFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 46777888888887322 112346789999999999999999988888887543
No 289
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=60.60 E-value=13 Score=27.75 Aligned_cols=51 Identities=6% Similarity=-0.039 Sum_probs=37.5
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 486 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~ 486 (499)
.+++.+..+|...|..+ .......+||..+|++...|..+...-..+.|+.
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 9 AYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 35667777777776322 1223467899999999999999998888887763
No 290
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=60.41 E-value=11 Score=28.66 Aligned_cols=51 Identities=10% Similarity=0.055 Sum_probs=37.3
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 486 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~ 486 (499)
.+++.+..+|...|-.+ .......+||..+|++...|..+...-..+.|+.
T Consensus 13 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2e1o_A 13 RFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRS 65 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCC
Confidence 45666777777666321 1223467899999999999999999888887764
No 291
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=60.13 E-value=7.5 Score=36.65 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 455 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 455 g~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+|.++||..+|+|+++|. |++++|++
T Consensus 217 ~lt~~~lA~~lG~sr~tvs----R~l~~L~~ 243 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVG----RILKMLED 243 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 4799999999999999995 66666664
No 292
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=60.10 E-value=8.4 Score=28.45 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=37.0
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 486 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~ 486 (499)
.+++.+..+|...|..+ .......+||..+|++...|..+...-..+.|+.
T Consensus 5 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 5 TFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred ccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 45777777887777322 1123467899999999999999998888877653
No 293
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=60.06 E-value=7.6 Score=37.11 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|+|..+||+.+|||+++|+++++.
T Consensus 43 ~gltQ~evA~~tGISqS~ISq~e~~ 67 (221)
T 2h8r_A 43 HNIPQREVVDVTGLNQSHLSQHLNK 67 (221)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHhC
Confidence 5799999999999999999999973
No 294
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=60.02 E-value=14 Score=28.80 Aligned_cols=54 Identities=13% Similarity=0.031 Sum_probs=39.0
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 489 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~~ 489 (499)
.+++.+..+|...|..+ .......+||..+|++...|..+...-..+.|+....
T Consensus 15 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 15 LFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 35666666776666321 1223467899999999999999999998888876543
No 295
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=59.78 E-value=12 Score=35.08 Aligned_cols=50 Identities=12% Similarity=0.106 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHhhCCHHH--HHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 423 WALKDEVNKLIIVTLGERE--REIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 423 ~el~~~L~~~L~~~L~~rE--R~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
.+....|..++ +.++.+ +.|-.+.- ..|+|..++|+.+|+|.++|++++.
T Consensus 14 ~~~~~~ie~~~--~e~p~~l~~~Ik~~l~---~~gitQ~~lA~~~GiSqs~ISr~l~ 65 (194)
T 1ic8_A 14 AHQKAVVETLL--QEDPWRVAKMVKSYLQ---QHNIPQREVVDTTGLNQSHLSQHLN 65 (194)
T ss_dssp HHHHHHHHHHT--TSCHHHHHHHHHHHHH---HTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHHH--ccCHHHHHHHHHHHHH---HcCCCHHHHHHHhCCChHHHHHHHh
Confidence 34455565555 345543 23433333 5689999999999999999999975
No 296
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=59.68 E-value=5.6 Score=32.28 Aligned_cols=25 Identities=12% Similarity=0.117 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 455 CLTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 455 g~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
|+++.++|++.|||++|++.+++..
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIenG~ 56 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIVNST 56 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHTCS
T ss_pred hcCHHHHHHHcCCCHHHHHHHHcCC
Confidence 6999999999999999999887643
No 297
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=59.44 E-value=16 Score=28.00 Aligned_cols=55 Identities=16% Similarity=0.165 Sum_probs=41.1
Q ss_pred hCCHHHHHHHHHHh---cCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHh
Q 010835 436 TLGEREREIIRLYY---GLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKK 490 (499)
Q Consensus 436 ~L~~rER~VI~Lry---GLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~~~ 490 (499)
.+++.+..+|...| ..+ .....-.+||..+|++...|..+......+.|+.....
T Consensus 7 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred cCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 46777888887776 211 11234678999999999999999999999988765443
No 298
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=59.34 E-value=9.2 Score=31.73 Aligned_cols=45 Identities=7% Similarity=0.158 Sum_probs=30.8
Q ss_pred HHHHHhhCCHHHH-HHHHHHhcCCCCCCCHHHHHHHH-CCCHHHHHHHHHH
Q 010835 430 NKLIIVTLGERER-EIIRLYYGLDKECLTWEDISKRI-GLSRERVRQVGLV 478 (499)
Q Consensus 430 ~~~L~~~L~~rER-~VI~LryGLd~eg~SleEIAe~L-gIS~~rVrqi~~r 478 (499)
...+ ..++++-+ .||..-. ..+++..|||+.+ |+++.+|.+++.+
T Consensus 13 ~~~l-~~l~~~~~~~IL~~L~---~~~~~~~eLa~~l~~is~~tvs~~L~~ 59 (112)
T 1z7u_A 13 NLAL-STINGKWKLSLMDELF---QGTKRNGELMRALDGITQRVLTDRLRE 59 (112)
T ss_dssp HHHH-HTTCSTTHHHHHHHHH---HSCBCHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHH-HHHcCccHHHHHHHHH---hCCCCHHHHHHHhccCCHHHHHHHHHH
Confidence 3445 55665544 4544333 3679999999999 9999999765543
No 299
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=59.08 E-value=14 Score=29.34 Aligned_cols=55 Identities=16% Similarity=0.165 Sum_probs=41.4
Q ss_pred hCCHHHHHHHHHHh---cCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHh
Q 010835 436 TLGEREREIIRLYY---GLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKK 490 (499)
Q Consensus 436 ~L~~rER~VI~Lry---GLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~~~ 490 (499)
.+++.+..+|.-.| -.+ .....-.+||..+|++...|..+......+.|+.....
T Consensus 7 ~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 46788888888776 211 11234678999999999999999999999998865443
No 300
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=59.07 E-value=43 Score=26.70 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 455 CLTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 455 g~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
+.++.+||+.+|+|+.++.+...+.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 7999999999999999999888776
No 301
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=58.88 E-value=4.5 Score=30.76 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=21.1
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 456 LTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 456 ~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
+|..|+|+.||||+.||.++....
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~G 26 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQG 26 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCC
Confidence 578999999999999999887654
No 302
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=58.85 E-value=16 Score=29.76 Aligned_cols=27 Identities=7% Similarity=0.076 Sum_probs=24.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
.++.++++||+.+|+|+.++.+...+.
T Consensus 19 ~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 19 SEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 468999999999999999999888776
No 303
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=58.82 E-value=16 Score=27.46 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=38.2
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+++.+..+|...|..+ .......+||..+|++...|..+...-..+.|+
T Consensus 7 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (67)
T 2k40_A 7 AFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKR 58 (67)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhH
Confidence 46778888888887322 112346789999999999999999888888765
No 304
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=58.59 E-value=9.9 Score=31.59 Aligned_cols=43 Identities=16% Similarity=0.301 Sum_probs=33.9
Q ss_pred hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHC----CCHHHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLDKECLTWEDISKRIG----LSRERVRQVGLVA 479 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd~eg~SleEIAe~Lg----IS~~rVrqi~~rA 479 (499)
..|++.|..|+..-+- .++.|..|||+.++ ++++||...+.+-
T Consensus 6 ~~Lt~~q~~vL~~L~~--~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rL 52 (126)
T 1sd4_A 6 VEISMAEWDVMNIIWD--KKSVSANEIVVEIQKYKEVSDKTIRTLITRL 52 (126)
T ss_dssp CCCCHHHHHHHHHHHH--SSSEEHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh--cCCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Confidence 3689999988877652 35799999999997 5899998776653
No 305
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=58.08 E-value=16 Score=29.68 Aligned_cols=27 Identities=15% Similarity=0.116 Sum_probs=24.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
.++.|+++||+.+|+|+.++.+...+.
T Consensus 16 ~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 16 MRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp TSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 467999999999999999999888876
No 306
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=58.03 E-value=8.1 Score=38.70 Aligned_cols=42 Identities=17% Similarity=0.320 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 438 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 438 ~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
++..+.||.+-.--+.+.+|-+|||+.||||+.+|.+.++.-
T Consensus 2 ~~~~~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L 43 (323)
T 3rkx_A 2 SKYSQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQL 43 (323)
T ss_dssp -CHHHHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHH
Confidence 344566666542001356999999999999999999988654
No 307
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=57.84 E-value=8.7 Score=34.70 Aligned_cols=26 Identities=12% Similarity=0.051 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..++|++|+|+.+|||+++|+++++.
T Consensus 21 ~~g~s~~~la~~~gis~~~ls~~e~g 46 (198)
T 2bnm_A 21 QVKMDHAALASLLGETPETVAAWENG 46 (198)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35799999999999999999999874
No 308
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=57.77 E-value=5.8 Score=32.79 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.++|+.++|+.+|||+.+|++++..
T Consensus 48 ~glsq~elA~~~gis~~~is~~E~G 72 (107)
T 2jvl_A 48 PTMTQAELGKEIGETAATVASYERG 72 (107)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999998763
No 309
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=57.58 E-value=8.6 Score=34.66 Aligned_cols=26 Identities=15% Similarity=0.217 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..++|++++|+.+|||+++|+++++-
T Consensus 22 ~~gltq~~lA~~~gis~~~is~~e~g 47 (192)
T 1y9q_A 22 SRGLSLDATAQLTGVSKAMLGQIERG 47 (192)
T ss_dssp HTTCCHHHHHHHHSSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35799999999999999999999864
No 310
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=57.45 E-value=4.1 Score=38.41 Aligned_cols=43 Identities=26% Similarity=0.237 Sum_probs=30.3
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCH--HHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTW--EDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~Sl--eEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..+|..-|-+..++.+. .+||+.||+++++|.+.+.+
T Consensus 3 ~lt~~~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~~ 47 (226)
T 2qq9_A 3 DLVATTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVAR 47 (226)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHHH
Confidence 45667767766655442245555 99999999999999865543
No 311
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=57.38 E-value=12 Score=32.68 Aligned_cols=46 Identities=13% Similarity=-0.020 Sum_probs=35.2
Q ss_pred hCCHHHHHHHHHHhcCC---CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD---KECLTWEDISKRIGLSRERVRQVGLVALE 481 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd---~eg~SleEIAe~LgIS~~rVrqi~~rALk 481 (499)
.|++.|-.|+...+.+. ..+-|.++||+.+|++..+|.+.+.+-++
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQ 77 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 58999988877655431 24579999999999999999776665444
No 312
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=57.34 E-value=2.2 Score=37.84 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
..++|++|||+.+|+|+.+|++++.
T Consensus 12 ~~gltq~elA~~lgis~~~vs~~e~ 36 (158)
T 2p5t_A 12 THDLTQLEFARIVGISRNSLSRYEN 36 (158)
T ss_dssp -------------------------
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHC
Confidence 5689999999999999999999865
No 313
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=57.11 E-value=18 Score=28.72 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=38.6
Q ss_pred hCCHHHHHHHHHHhcCC-----CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD-----KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 488 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd-----~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~ 488 (499)
.+++.+..+|.-.|.-+ .....-++||..+|+|...|..+...+..+.++.+.
T Consensus 13 ~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 13 NLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp SCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 46667777776554110 122356789999999999999999999999887653
No 314
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=56.88 E-value=12 Score=29.88 Aligned_cols=25 Identities=16% Similarity=0.048 Sum_probs=21.3
Q ss_pred CCCCHHHHHHHHCCCHHH-HHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRER-VRQVGLV 478 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~r-Vrqi~~r 478 (499)
.+.|..|||+.+|+++++ |.+++.+
T Consensus 29 ~~~t~~eLa~~l~is~~t~vs~~l~~ 54 (95)
T 2pg4_A 29 YEPSLAEIVKASGVSEKTFFMGLKDR 54 (95)
T ss_dssp CCCCHHHHHHHHCCCHHHHHTTHHHH
T ss_pred CCCCHHHHHHHHCCCchHHHHHHHHH
Confidence 379999999999999999 9766544
No 315
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=56.84 E-value=35 Score=26.00 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=39.1
Q ss_pred hCCHHHHHHHHHHhcC-C--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGL-D--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 487 (499)
Q Consensus 436 ~L~~rER~VI~LryGL-d--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L 487 (499)
.+++.+..+|...|.- + .......+||..+|++...|..+...-..+.|+.-
T Consensus 7 ~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 7 TMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 4677788888888731 1 11234678999999999999999988888887753
No 316
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=56.72 E-value=18 Score=28.36 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=38.6
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 487 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L 487 (499)
.+++.+..+|...|-.+ .......+||..+|++...|..+...-..+.|+..
T Consensus 24 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 24 TFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 46677777777766321 11234678999999999999999999998888754
No 317
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=56.62 E-value=7.2 Score=36.03 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHCCCH-HHHHHHHHHHHHHHHH
Q 010835 455 CLTWEDISKRIGLSR-ERVRQVGLVALEKLKH 485 (499)
Q Consensus 455 g~SleEIAe~LgIS~-~rVrqi~~rALkKLR~ 485 (499)
.+|.++||..+|+|+ ++|. |++++|++
T Consensus 169 ~~t~~~lA~~lG~sr~etvs----R~l~~l~~ 196 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVS----RIISKLKQ 196 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCChHHHHH----HHHHHHHH
Confidence 689999999999999 7995 66666654
No 318
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=56.58 E-value=18 Score=33.79 Aligned_cols=44 Identities=14% Similarity=-0.012 Sum_probs=31.2
Q ss_pred hhCCHHHHHHHHHHhcCC-CCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd-~eg~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
.-|++.||-.=..+. |+ +...+++++|+.+|||+..|++.+.-|
T Consensus 22 rplS~yErg~~y~r~-L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A 66 (189)
T 3mky_B 22 RPTSAYERGQRYASR-LQNEFAGNISALADAENISRKIITRCINTA 66 (189)
T ss_dssp -CCCHHHHHHHHHHH-HHTTTTTCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH-HhcCcccCHHHHHHHHCCCHHHHHHHHHHh
Confidence 356666666555544 32 346899999999999999998777654
No 319
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=56.49 E-value=15 Score=36.59 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 437 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 437 L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
..++...|+.+-- +....|.+|||+.||||+.||++.+..-
T Consensus 3 ~~~r~~~Il~~L~--~~~~~s~~eLa~~l~vS~~ti~r~l~~L 43 (321)
T 1bia_A 3 DNTVPLKLIALLA--NGEFHSGEQLGETLGMSRAAINKHIQTL 43 (321)
T ss_dssp CCHHHHHHHHHHT--TSSCBCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHH--cCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3566777776643 2356999999999999999999988753
No 320
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=56.38 E-value=15 Score=26.94 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=36.9
Q ss_pred hCCHHHHHHHHHHhcCCC-CC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDK-EC----LTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~-eg----~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+++.+..+|.-.|.-+. .+ ....+||..+|++...|..+......+.|+
T Consensus 4 ~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 4 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp SCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 467778888877763210 12 236689999999999999999888877664
No 321
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=56.28 E-value=31 Score=28.22 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=24.1
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
.++.|+++||+.+|+|+.++.+...+.
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 21 EEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 467999999999999999998888776
No 322
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=56.21 E-value=13 Score=37.49 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=32.1
Q ss_pred CCHHHHHHHHH------HhcCCCCCCCHHHHHHHH--CCCHHHHHHHHH
Q 010835 437 LGEREREIIRL------YYGLDKECLTWEDISKRI--GLSRERVRQVGL 477 (499)
Q Consensus 437 L~~rER~VI~L------ryGLd~eg~SleEIAe~L--gIS~~rVrqi~~ 477 (499)
|++|++.|+.. .- .++.+.++||+.+ |+|..|||+-+.
T Consensus 15 l~eR~~~IL~~i~~~yl~~---~~pV~s~~La~~~~l~VS~aTIRrDL~ 60 (338)
T 1stz_A 15 LNDRQRKVLYCIVREYIEN---KKPVSSQRVLEVSNIEFSSATIRNDMK 60 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHH---CSCBCHHHHHHHSCCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHc---CCCccHHHHHHHhCCCCCHHHHHHHHH
Confidence 78999999983 22 4789999999999 999999987654
No 323
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=56.07 E-value=15 Score=27.79 Aligned_cols=51 Identities=12% Similarity=0.035 Sum_probs=37.9
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 486 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~ 486 (499)
.+++.+..+|...|..+ .......+||..+|+|...|..+...-..+.|+.
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 60 (68)
T 1ftt_A 8 LFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 60 (68)
T ss_dssp SCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhh
Confidence 35677777777776322 1223467899999999999999998888887764
No 324
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=56.01 E-value=15 Score=26.50 Aligned_cols=48 Identities=6% Similarity=-0.026 Sum_probs=35.1
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKL 483 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKL 483 (499)
.+++.+..+|...|-.+ .......+||..+|++...|..+...-..|.
T Consensus 8 ~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 57 (58)
T 3rkq_A 8 LFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKS 57 (58)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccC
Confidence 46777888888877322 1123467899999999999999988766553
No 325
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=55.46 E-value=21 Score=27.33 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=38.0
Q ss_pred hCCHHHHHHHHHHhcC---C--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGL---D--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 487 (499)
Q Consensus 436 ~L~~rER~VI~LryGL---d--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L 487 (499)
.+++.+..+|.-.|-- + .....-++||..+|++...|..+......+.++.+
T Consensus 13 ~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 13 VLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 4677777777766510 0 11234668999999999999999999999888754
No 326
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=55.19 E-value=6.3 Score=35.43 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=20.9
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 010835 456 LTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 456 ~SleEIAe~LgIS~~rVrqi~~r 478 (499)
+|..|+|+.||||+.+|++++..
T Consensus 32 LTv~EVAe~LgVs~srV~~LIr~ 54 (148)
T 2kfs_A 32 YDLPRVAELLGVPVSKVAQQLRE 54 (148)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHT
T ss_pred EcHHHHHHHhCCCHHHHHHHHHC
Confidence 79999999999999999987653
No 327
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=55.18 E-value=11 Score=35.14 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..+.+..+||+.||+|+.+|++.+.+
T Consensus 18 ~~~~~~~~lA~~l~vs~~tvs~~l~~ 43 (214)
T 3hrs_A 18 HNKITNKEIAQLMQVSPPAVTEMMKK 43 (214)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCChhHHHHHHHH
Confidence 46799999999999999999765544
No 328
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=55.17 E-value=10 Score=33.73 Aligned_cols=43 Identities=14% Similarity=0.088 Sum_probs=32.9
Q ss_pred hCCHHHHHHHHHHhcCCC-CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~-eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+..||..-+.-+. .+.|..|||+.+|+++++|.+.+.+
T Consensus 66 glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~ 109 (181)
T 2fbk_A 66 GLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVR 109 (181)
T ss_dssp TCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 689999998887652111 1389999999999999999765544
No 329
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=55.04 E-value=11 Score=27.84 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=34.6
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEK 482 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkK 482 (499)
.+++.+..+|...|..+ .......+||..+|++...|..+......+
T Consensus 11 ~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k 59 (61)
T 1akh_A 11 SISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 59 (61)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 47888888888877322 112346789999999999999998776655
No 330
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=55.01 E-value=7.2 Score=36.30 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..++|..|+|+.+|+|+++|+++++.
T Consensus 28 ~~g~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 28 ELGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp TTTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 45789999999999999999999865
No 331
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=54.33 E-value=24 Score=33.52 Aligned_cols=41 Identities=22% Similarity=0.135 Sum_probs=31.8
Q ss_pred hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
..|++-|+.....+.- ..|+|.++||+.+|+|+.+|++.+.
T Consensus 116 ~~L~~~E~a~~~~~l~--~~g~t~~~iA~~lG~s~~~V~~~l~ 156 (230)
T 1vz0_A 116 EDLSPVEEARGYQALL--EMGLTQEEVARRVGKARSTVANALR 156 (230)
T ss_dssp TTCCHHHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHH
Confidence 4788888775544431 2579999999999999999988765
No 332
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=54.32 E-value=28 Score=29.33 Aligned_cols=49 Identities=18% Similarity=0.075 Sum_probs=36.7
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~L-----gIS~~rVrqi~~rALkKLR 484 (499)
.|+++|..+|.+-.-=.+...|.++|.+.+ ..+..+|++.+.+-++||.
T Consensus 43 ~Lt~~E~~LL~~L~~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~ 96 (121)
T 2hwv_A 43 ELTHREFELLYYLAKHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIE 96 (121)
T ss_dssp ECCHHHHHHHHHHHHTTTCCBCHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHHC
T ss_pred ECCHHHHHHHHHHHHcCCeEEcHHHHHHHHcCCCCCCCccHHHHHHHHHHHHHh
Confidence 589999998877541124569999999998 5778888777776666664
No 333
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=53.87 E-value=19 Score=29.38 Aligned_cols=53 Identities=11% Similarity=0.056 Sum_probs=41.0
Q ss_pred hhCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 487 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L 487 (499)
..+++.+..+|...|--+ .......+||..+|++...|..+...-..|.|+..
T Consensus 39 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 39 TNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 357888888888888321 11234678999999999999999998888888754
No 334
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=53.70 E-value=21 Score=27.75 Aligned_cols=52 Identities=8% Similarity=0.033 Sum_probs=36.9
Q ss_pred CCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q 010835 437 LGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 488 (499)
Q Consensus 437 L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~ 488 (499)
+++.+..+|...|-.+ .......+||..+|++...|..+...-..+.|+...
T Consensus 20 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 20 YTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 4555556666555211 122346789999999999999999998888887653
No 335
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=53.29 E-value=13 Score=29.11 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=37.5
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 486 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~ 486 (499)
.+++.+..+|...|-.+ .......+||..+|++...|..+...-..+.|+.
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~ 65 (80)
T 2dms_A 13 TFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 65 (80)
T ss_dssp SCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHH
Confidence 35666777777766321 1123467899999999999999999888887764
No 336
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=53.26 E-value=27 Score=30.38 Aligned_cols=24 Identities=17% Similarity=0.026 Sum_probs=20.9
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHhh
Q 010835 358 PSVDRIAEYLNMSQKKVRNATEAI 381 (499)
Q Consensus 358 pt~eEIA~~Lgis~e~v~~~l~~~ 381 (499)
-+..+||+.+|++...|...+...
T Consensus 42 ~s~~~IA~~lgis~~TV~rwl~r~ 65 (159)
T 2k27_A 42 VRPCDISRQLRVSHGCVSKILGRY 65 (159)
T ss_dssp CCHHHHHHHHTCCSHHHHHHHCCS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 478899999999999999887654
No 337
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=53.22 E-value=17 Score=31.77 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..++++.||++.+|||+.+|.+++.+
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~L~~ 60 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAARLRN 60 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 35799999999999999999766543
No 338
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=53.12 E-value=16 Score=30.22 Aligned_cols=45 Identities=11% Similarity=0.150 Sum_probs=35.8
Q ss_pred hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 483 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKL 483 (499)
..|++.|+.|+.+..--+.+|...++|..++|++..+|. +++++|
T Consensus 33 ~~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vt----kiLK~L 77 (95)
T 2yu3_A 33 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEIN----KILKNL 77 (95)
T ss_dssp CSCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHH----HHHHHH
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHH----HHHHHH
Confidence 578999999988865334678999999999999988875 455555
No 339
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=53.11 E-value=31 Score=28.17 Aligned_cols=42 Identities=10% Similarity=-0.031 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Q 010835 439 EREREIIRLYYGLDKECLTWEDISKRI-GLSRERVRQVGLVALEKL 483 (499)
Q Consensus 439 ~rER~VI~LryGLd~eg~SleEIAe~L-gIS~~rVrqi~~rALkKL 483 (499)
+|+-.+...+- .-++|+.+||+.| |....||.....+.-+.+
T Consensus 33 aRqiamyL~r~---~t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~ 75 (94)
T 1j1v_A 33 PRQMAMALAKE---LTNHSLPEIGDAFGGRDHTTVLHACRKIEQLR 75 (94)
T ss_dssp HHHHHHHHHHH---HSCCCHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---HHCcCHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 34433443443 4689999999999 899999975555544443
No 340
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=52.83 E-value=27 Score=27.28 Aligned_cols=55 Identities=22% Similarity=0.217 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHh-cCCCCC---CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010835 422 DWALKDEVNKLIIVTLGEREREIIRLYY-GLDKEC---LTWEDISKRIGLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 422 ~~el~~~L~~~L~~~L~~rER~VI~Lry-GLd~eg---~SleEIAe~LgIS~~rVrqi~~rALkKLR 484 (499)
...+...+. . .++++++.|...-- -||.+| .++++||+.+|++...|. ++++.|+
T Consensus 15 ~ehL~~Ql~-~---~~~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve----~vL~~lQ 73 (76)
T 2k9l_A 15 LEELQQNIK-L---ELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELE----KVRQKVL 73 (76)
T ss_dssp HHHHHHHHH-H---HCCTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHH----HHHHHHH
T ss_pred HHHHHHHHc-c---cCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHH----HHHHHHh
Confidence 334444554 2 48999998776543 345555 689999999999999885 4444444
No 341
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=52.83 E-value=1.3e+02 Score=27.04 Aligned_cols=176 Identities=13% Similarity=0.058 Sum_probs=87.6
Q ss_pred HHHHHHHHHHhHhhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHHHHHHHHHHHHHhhhcccccccHHHHHH
Q 010835 263 SNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLG 342 (499)
Q Consensus 263 ~yl~LV~sIA~ry~~~g~d~EDLiQEG~IgL~rAiekFDp~rG~kFsTYA~~wIR~aI~~al~~~~R~vRip~~~~e~l~ 342 (499)
.-...|..++.++. ++ +-+.+.-.-+++-+...+.-+|.+....+.-.+.- +++
T Consensus 11 ~a~~~I~~~~~~L~---L~--~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclyl----Acr----------------- 64 (200)
T 1ais_B 11 FALSELDRITAQLK---LP--RHVEEEAARLYREAVRKGLIRGRSIESVMAACVYA----ACR----------------- 64 (200)
T ss_dssp HHHHHHHHHHHHHT---CC--HHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHH----HHH-----------------
T ss_pred HHHHHHHHHHHHcC---CC--HHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHH----HHH-----------------
Confidence 34555666666653 22 44555555666665555555665544444333322 111
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhhccccccccccCCCCCCCCCCccccccccccCCCCCcchHHH
Q 010835 343 LIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDD 422 (499)
Q Consensus 343 ~irka~~~L~~~gr~pt~eEIA~~Lgis~e~v~~~l~~~~~~~SLD~~~~~~~~~~e~~~l~e~i~d~~~e~~Pee~ve~ 422 (499)
..|.+.+..||+...+++..++........+.+.++-++. ..++...+..+...-. -|. .+ .
T Consensus 65 ----------~~~~p~~l~di~~~~~v~~~~i~~~~~~l~~~L~~~~~~~---~~~p~~~i~r~~~~L~---l~~-~v-~ 126 (200)
T 1ais_B 65 ----------LLKVPRTLDEIADIARVDKKEIGRSYRFIARNLNLTPKKL---FVKPTDYVNKFADELG---LSE-KV-R 126 (200)
T ss_dssp ----------HHTCCCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCTTTT---CCCGGGGHHHHHHHHT---CCH-HH-H
T ss_pred ----------HcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHhcccCCcC---CCCHHHHHHHHHHHcC---CCH-HH-H
Confidence 1345678899999999999998887776544443332210 0011111111111111 111 11 1
Q ss_pred HHHHHHHHHHHHh----hCCHHHHH--HHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010835 423 WALKDEVNKLIIV----TLGERERE--IIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEK 482 (499)
Q Consensus 423 ~el~~~L~~~L~~----~L~~rER~--VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkK 482 (499)
..-...+..+... .-+|.--- .|-+---+.+.+.|.+||++..|++..||++....-.+.
T Consensus 127 ~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~ 192 (200)
T 1ais_B 127 RRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEK 192 (200)
T ss_dssp HHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1222333333321 12333221 222211112467899999999999999998766554443
No 342
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=52.81 E-value=11 Score=31.52 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=22.1
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 454 ECL-TWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 454 eg~-SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
+.+ |..++|+.||||+.+|+ +|+..|..
T Consensus 31 ~~lPs~~~La~~~~vSr~tvr----~al~~L~~ 59 (113)
T 3tqn_A 31 EMIPSIRKISTEYQINPLTVS----KAYQSLLD 59 (113)
T ss_dssp CEECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CcCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 345 89999999999999996 56666653
No 343
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=52.48 E-value=22 Score=29.74 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=37.1
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~L-----gIS~~rVrqi~~rALkKLR~ 485 (499)
.|+++|..+|.+-.-=.+...|.++|.+.+ ..+..+|++.+.+-++||..
T Consensus 41 ~Lt~~E~~LL~~L~~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~ 95 (115)
T 2k4j_A 41 DLTRAEYEILSLLISKKGYVFSRESIAIESESINPESSNKSIDVIIGRLRSKIEK 95 (115)
T ss_dssp CSCHHHHHHHHHHHHHCCCEECHHHHHHHTCCSSCTTCHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHcCCcEEcHHHHHHHHcCCCCCCchhHHHHHHHHHHHHhhc
Confidence 589999998877541123569999999999 57788888777776666653
No 344
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=52.19 E-value=17 Score=34.74 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..+.|.++||+.+|+++++|+..+.+
T Consensus 176 ~~~~t~~~la~~~~l~~~~V~~~l~~ 201 (232)
T 2qlz_A 176 NGRATVEELSDRLNLKEREVREKISE 201 (232)
T ss_dssp SSEEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 57899999999999999999876653
No 345
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=52.07 E-value=11 Score=32.11 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=21.8
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 454 ECL-TWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 454 eg~-SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
+.+ |..+||+.||||+.||+ +|+..|..
T Consensus 35 ~~Lps~~~La~~~~vSr~tvr----~Al~~L~~ 63 (125)
T 3neu_A 35 DKLPSVREMGVKLAVNPNTVS----RAYQELER 63 (125)
T ss_dssp CBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 445 69999999999999996 55555543
No 346
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=52.03 E-value=8.5 Score=32.03 Aligned_cols=26 Identities=8% Similarity=0.162 Sum_probs=22.8
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Q 010835 455 CLTWEDISKRIGLSRERVRQVGLVAL 480 (499)
Q Consensus 455 g~SleEIAe~LgIS~~rVrqi~~rAL 480 (499)
++|..|+|+.+|||+.|++.+...++
T Consensus 1 ~~~i~e~A~~~gvs~~tLR~ye~~Gl 26 (108)
T 2vz4_A 1 SYSVGQVAGFAGVTVRTLHHYDDIGL 26 (108)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 37899999999999999999987654
No 347
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=51.99 E-value=23 Score=29.27 Aligned_cols=43 Identities=19% Similarity=0.094 Sum_probs=30.8
Q ss_pred hCCHHHHHHHH-HHhcC---CCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIR-LYYGL---DKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~-LryGL---d~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.+-.|+. |.... .....++.+||+.++++++++++.+.+
T Consensus 13 gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~r 59 (96)
T 2obp_A 13 GIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQ 59 (96)
T ss_dssp CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHH
Confidence 47777777766 44310 125689999999999999999766543
No 348
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=51.71 E-value=12 Score=28.68 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=19.1
Q ss_pred CHHHHHHHHCCCHHHHHHHH
Q 010835 457 TWEDISKRIGLSRERVRQVG 476 (499)
Q Consensus 457 SleEIAe~LgIS~~rVrqi~ 476 (499)
++.+.|+.||||+.+|++++
T Consensus 15 s~t~aA~~L~vtQ~AVS~~i 34 (66)
T 2ovg_A 15 GQTKTAKDLGVYPSSINQAI 34 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 89999999999999999986
No 349
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=51.66 E-value=12 Score=31.72 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+..|.+|||+.+|+|+.+|+++ +.+|++
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~i----l~~L~~ 52 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQL----VSPLRN 52 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHH----HHHHHH
T ss_pred CCcCCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 35689999999999999999654 445543
No 350
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=51.64 E-value=91 Score=24.94 Aligned_cols=36 Identities=11% Similarity=0.159 Sum_probs=26.4
Q ss_pred HHHHHHHHH-cC-CCCCHHHHHHHhCCCHHHHHHHHHh
Q 010835 345 RNAKLRLEE-KG-VTPSVDRIAEYLNMSQKKVRNATEA 380 (499)
Q Consensus 345 rka~~~L~~-~g-r~pt~eEIA~~Lgis~e~v~~~l~~ 380 (499)
.++...+.+ .. ..+++++||+.+|++...+......
T Consensus 6 ~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 6 REACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp HHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 344444443 34 5788999999999999998887654
No 351
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=51.62 E-value=25 Score=27.00 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=38.8
Q ss_pred hCCHHHHHHHHHHhcC-C--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGL-D--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 487 (499)
Q Consensus 436 ~L~~rER~VI~LryGL-d--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L 487 (499)
.+++.+..+|...|.. + .......+||..+|++...|..+...-..+.|+.-
T Consensus 8 ~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 8 GPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp SCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 4577777788777731 1 11234678999999999999999988888887753
No 352
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=51.47 E-value=8.9 Score=30.94 Aligned_cols=39 Identities=10% Similarity=0.036 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 437 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 437 L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
|..-|+.+|...+- ..+.+..+.|+.||||+.|+.+.+.
T Consensus 48 l~~~E~~~i~~aL~--~~~gn~~~aA~~LGIsr~tL~rklk 86 (91)
T 1ntc_A 48 QPELERTLLTTALR--HTQGHKQEAARLLGWGAATLTAKLK 86 (91)
T ss_dssp HHHHHHHHHHHHHH--HTTTCTTHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--HhCCCHHHHHHHHCcCHHHHHHHHH
Confidence 34556666655431 2345777999999999999865543
No 353
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=51.16 E-value=50 Score=26.58 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
++.|+++||+.+|+|+.++.+...+.
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 67999999999999999999888775
No 354
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=51.10 E-value=12 Score=33.07 Aligned_cols=39 Identities=10% Similarity=0.113 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 437 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 437 L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
+++.+++++..... ..+.+..+||+.||+|+.||++.+.
T Consensus 140 ~~~~~~~~~~~~~~--~~~~~~~~ia~~l~is~~tv~~~l~ 178 (184)
T 3rqi_A 140 VDRLEWEHIQRVLA--ENNNNISATARALNMHRRTLQRKLA 178 (184)
T ss_dssp ---CHHHHHHHHHH--HTTSCHHHHHHHHTSCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH--hccccHHHHHHHcCCcHHHHHHHHH
Confidence 45556666655441 3589999999999999999976553
No 355
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=51.04 E-value=19 Score=29.15 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=30.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHh
Q 010835 455 CLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKK 490 (499)
Q Consensus 455 g~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~~~ 490 (499)
..++..+|+.+||+.++|+++..--+.++...|..-
T Consensus 24 ~~gQ~~vAe~~GvdeStISR~k~~~~~~~~~lLa~L 59 (83)
T 1zs4_A 24 MLGTEKTAEAVGVDKSQISRWKRDWIPKFSMLLAVL 59 (83)
T ss_dssp HHCHHHHHHHHTSCHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHhhHHHHHHhCCCHHHHhhhhhhHHHHHHHHHHHh
Confidence 468899999999999999999887777777766553
No 356
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=50.76 E-value=23 Score=30.25 Aligned_cols=37 Identities=14% Similarity=0.109 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 010835 441 EREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALE 481 (499)
Q Consensus 441 ER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALk 481 (499)
...++.++ .+|+|++|||..-|++..||-.++.....
T Consensus 22 ~~~t~~l~----~~G~sleeIA~~R~L~~~TI~~Hl~~~v~ 58 (122)
T 3iuo_A 22 KVSIVQQI----DRKVALDDIAVSHGLDFPELLSEVETIVY 58 (122)
T ss_dssp HHHHHHHH----HTTCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH----HcCCCHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 34566665 49999999999999999999877766643
No 357
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.63 E-value=12 Score=29.08 Aligned_cols=50 Identities=14% Similarity=0.058 Sum_probs=36.6
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+++.+..+|...|-.+ ......++||..+|++...|..+...-..+.|+
T Consensus 14 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk 65 (76)
T 2dn0_A 14 KKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRN 65 (76)
T ss_dssp CCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSS
T ss_pred cCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHH
Confidence 45666666776666321 233457899999999999999999888777664
No 358
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=50.54 E-value=12 Score=32.17 Aligned_cols=27 Identities=11% Similarity=0.123 Sum_probs=21.7
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010835 454 ECL-TWEDISKRIGLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 454 eg~-SleEIAe~LgIS~~rVrqi~~rALkKLR 484 (499)
+.+ |..++|+.||||+.+|+ +|++.|.
T Consensus 26 ~~LPse~~La~~~gvSr~tVr----~Al~~L~ 53 (129)
T 2ek5_A 26 QRVPSTNELAAFHRINPATAR----NGLTLLV 53 (129)
T ss_dssp SCBCCHHHHHHHTTCCHHHHH----HHHHHHH
T ss_pred CcCcCHHHHHHHHCcCHHHHH----HHHHHHH
Confidence 445 89999999999999997 4555554
No 359
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=50.43 E-value=9 Score=29.85 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 455 CLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 455 g~SleEIAe~LgIS~~rVrqi~~r 478 (499)
-+|.+|.|+.|||++.+|+++...
T Consensus 16 ~LTi~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 16 TLTIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp EEEHHHHHHHTCSCHHHHHHHHHH
T ss_pred eeCHHHHHHHHCcCHHHHHHHHHc
Confidence 379999999999999999988755
No 360
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=50.23 E-value=8.6 Score=30.02 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=32.8
Q ss_pred CCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 437 LGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 437 L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
+++.+..+|...|-.+ ......++||..+|++...|..+...-..+.|+
T Consensus 24 ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 74 (80)
T 2da3_A 24 ITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERK 74 (80)
T ss_dssp CCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhh
Confidence 3444444444444111 122345789999999999999999988888775
No 361
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=49.99 E-value=97 Score=24.77 Aligned_cols=36 Identities=8% Similarity=0.117 Sum_probs=26.2
Q ss_pred HHHHHHH-HcCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 010835 346 NAKLRLE-EKGVTPSVDRIAEYLNMSQKKVRNATEAI 381 (499)
Q Consensus 346 ka~~~L~-~~gr~pt~eEIA~~Lgis~e~v~~~l~~~ 381 (499)
++...+. .....+++++||+.+|+++..+.......
T Consensus 6 ~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 6 QVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3334443 34556899999999999999998876553
No 362
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=49.42 E-value=13 Score=29.79 Aligned_cols=23 Identities=9% Similarity=0.238 Sum_probs=18.7
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Q 010835 455 CLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 455 g~SleEIAe~LgIS~~rVrqi~~ 477 (499)
+-+..+.|+.||||+.|+.+.+.
T Consensus 54 ~GN~s~AA~~LGISR~TLyrKLk 76 (81)
T 1umq_A 54 DRNVSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Confidence 35788999999999999876543
No 363
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.35 E-value=12 Score=29.29 Aligned_cols=50 Identities=16% Similarity=0.078 Sum_probs=34.8
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+++.+..+|...|-.+ .......+||..+|++...|..+...-..|.|+
T Consensus 23 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk 74 (80)
T 2dmt_A 23 VFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKK 74 (80)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhc
Confidence 35566666666665221 122346789999999999999999888777654
No 364
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=49.18 E-value=1e+02 Score=24.72 Aligned_cols=28 Identities=4% Similarity=-0.037 Sum_probs=23.1
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 010835 354 KGVTPSVDRIAEYLNMSQKKVRNATEAI 381 (499)
Q Consensus 354 ~gr~pt~eEIA~~Lgis~e~v~~~l~~~ 381 (499)
.....++++||+.+|+++..+.......
T Consensus 18 ~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 18 FSEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp TTSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3557899999999999999998876543
No 365
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=49.17 E-value=17 Score=30.87 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVG 476 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~ 476 (499)
+++.|..+||+..|||++++-.+.
T Consensus 22 ~~~~t~~~Ia~~agvs~~t~Y~~F 45 (170)
T 3egq_A 22 PHEVSIEEIAREAKVSKSLIFYHF 45 (170)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHC
T ss_pred CccCcHHHHHHHhCCCchhHHHHc
Confidence 678999999999999999997664
No 366
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=49.10 E-value=11 Score=29.10 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=25.7
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHH-----HHHHHHHHHH
Q 010835 457 TWEDISKRIGLSRERVRQVGLVA-----LEKLKHAARK 489 (499)
Q Consensus 457 SleEIAe~LgIS~~rVrqi~~rA-----LkKLR~~L~~ 489 (499)
|+.++|+.+|||+++|+++++.- +..|.+.+..
T Consensus 29 sq~~lA~~~gis~~~is~~E~g~~~~p~~~~l~~ia~~ 66 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARV 66 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 99999999999999999998642 3455554444
No 367
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=48.78 E-value=36 Score=34.29 Aligned_cols=189 Identities=10% Similarity=0.070 Sum_probs=54.1
Q ss_pred HHHHHHHHhHhhCCCCCHHHHHHHHHHHHHHhhhcCCCCCCCcchhHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHH
Q 010835 265 VRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI 344 (499)
Q Consensus 265 l~LV~sIA~ry~~~g~d~EDLiQEG~IgL~rAiekFDp~rG~kFsTYA~~wIR~aI~~al~~~~R~vRip~~~~e~l~~i 344 (499)
+..|..++.++.- -+-+.|.-.-+++-+...+.-+|.+....+.-.|.- +++.
T Consensus 130 ~~~I~~~~~~L~L-----p~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYi----ACR~------------------ 182 (345)
T 4bbr_M 130 FAKITMLCDAAEL-----PKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILI----GCRR------------------ 182 (345)
T ss_dssp HHHHHHHHHHTTC-----CHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHH----HHHH------------------
T ss_pred HHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHH----HHHh------------------
Confidence 3455566655432 356777777788877766666776655544433322 3222
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhhcccccccccc-CCCC--CCCCCCccccccccccCCCCCcchHH
Q 010835 345 RNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREA-FPSL--NGLPGETHHSYIADNRVENNPWHGVD 421 (499)
Q Consensus 345 rka~~~L~~~gr~pt~eEIA~~Lgis~e~v~~~l~~~~~~~SLD~~~-~~~~--~~~e~~~l~e~i~d~~~e~~Pee~ve 421 (499)
.+.+.+..||++.++++..++........+.+.+.... +... ..-......+++..-...-+..+.+.
T Consensus 183 ---------~~~prtl~eI~~~~~v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~ 253 (345)
T 4bbr_M 183 ---------AEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVT 253 (345)
T ss_dssp ---------TCCBCCHHHHHHHHTCCTTHHHHHHHHHHHCC---------------------------------------
T ss_pred ---------cCCCccHHHHHHHhCCCHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHHH
Confidence 34556778899999999888888777765555543100 0000 00000001111111000000000010
Q ss_pred HHHHHHHHHHHHHhh-C---CHH--HHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHh
Q 010835 422 DWALKDEVNKLIIVT-L---GER--EREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKK 490 (499)
Q Consensus 422 ~~el~~~L~~~L~~~-L---~~r--ER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~~~ 490 (499)
. .-.+.+..+.... + +|. ---+|.+---+.+...|.+|||+..|||..||+++...-+..+.+.+...
T Consensus 254 ~-~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~rykel~~~~~~l~~~~ 327 (345)
T 4bbr_M 254 T-SAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLVDPQ 327 (345)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred H-HHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCHH
Confidence 0 0011111111000 1 111 11122221111246789999999999999999999888888777766444
No 368
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=48.71 E-value=15 Score=34.68 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR 484 (499)
++.++..++|+.||||+.+|| +|+..|.
T Consensus 47 G~~L~e~~La~~lgVSr~~VR----eAL~~L~ 74 (237)
T 3c7j_A 47 GTALRQQELATLFGVSRMPVR----EALRQLE 74 (237)
T ss_dssp TCBCCHHHHHHHHTSCHHHHH----HHHHHHH
T ss_pred cCeeCHHHHHHHHCCCHHHHH----HHHHHHH
Confidence 356899999999999999997 5666664
No 369
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=48.64 E-value=5.1 Score=32.71 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=19.3
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHH
Q 010835 454 ECL-TWEDISKRIGLSRERVRQVG 476 (499)
Q Consensus 454 eg~-SleEIAe~LgIS~~rVrqi~ 476 (499)
+.+ |..+||+.||||+.||++.+
T Consensus 33 ~~lps~~eLa~~~~vSr~tvr~al 56 (102)
T 1v4r_A 33 DTLPSVADIRAQFGVAAKTVSRAL 56 (102)
T ss_dssp SBCCCHHHHHHHSSSCTTHHHHHT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHH
Confidence 445 99999999999999997543
No 370
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=48.40 E-value=15 Score=31.74 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.+.|..+||+.||+|+.+|++.+.+
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~ 77 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKR 77 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHH
Confidence 5689999999999999999765443
No 371
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=48.32 E-value=21 Score=29.24 Aligned_cols=53 Identities=17% Similarity=0.016 Sum_probs=39.0
Q ss_pred hCCHHHHHHHHHHhcCC-----CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD-----KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 488 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd-----~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~ 488 (499)
-||+....||.-.|.-. .....-++||..+|+|...|..+...+..+.++.+.
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 36777777777655110 112345679999999999999999999999987654
No 372
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=48.29 E-value=22 Score=28.31 Aligned_cols=51 Identities=8% Similarity=0.021 Sum_probs=39.0
Q ss_pred hhCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
..+++.+..+|...|-.+ .......+||..+|++...|..+...-..+.|+
T Consensus 33 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 85 (88)
T 2r5y_A 33 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 85 (88)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHh
Confidence 357888888888888322 112346789999999999999999888887765
No 373
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=48.16 E-value=17 Score=33.87 Aligned_cols=37 Identities=22% Similarity=0.269 Sum_probs=29.2
Q ss_pred CHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 438 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 438 ~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
++....||.+-. ..+++..|||+.+|+|.++|.+++.
T Consensus 14 ~~~rl~IL~~L~---~~~~s~~eLa~~l~is~stvs~hLk 50 (202)
T 2p4w_A 14 NETRRRILFLLT---KRPYFVSELSRELGVGQKAVLEHLR 50 (202)
T ss_dssp SHHHHHHHHHHH---HSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 566666776544 4789999999999999999976654
No 374
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.14 E-value=18 Score=29.07 Aligned_cols=50 Identities=8% Similarity=-0.045 Sum_probs=36.5
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
..++.|..+|...|-.+ ......++||..+|++...|..+...-..|.|+
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~ 70 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDS 70 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHH
Confidence 45666777777666321 122456789999999999999999888777664
No 375
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=47.87 E-value=12 Score=28.51 Aligned_cols=50 Identities=10% Similarity=0.150 Sum_probs=35.7
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+++.+..+|...|-.+ .......+||..+|++...|..+...-..+.|+
T Consensus 13 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk 64 (70)
T 2da2_A 13 RFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARK 64 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhh
Confidence 35666667777666221 122346789999999999999999888777654
No 376
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=47.75 E-value=23 Score=33.94 Aligned_cols=43 Identities=16% Similarity=0.075 Sum_probs=33.3
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|++.|-.||..-+.-+..++|..|||+.+++++++|.+++.+
T Consensus 155 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~r 197 (250)
T 1p4x_A 155 TLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNN 197 (250)
T ss_dssp SSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 6899999888776521112489999999999999999766554
No 377
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=47.75 E-value=19 Score=28.29 Aligned_cols=52 Identities=10% Similarity=0.017 Sum_probs=38.7
Q ss_pred hhCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 486 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~ 486 (499)
..+++.+..+|...|..+ ......++||..+|++...|..+...-..|.|+.
T Consensus 25 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 25 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred cccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 356777777887777321 1223467899999999999999998888887753
No 378
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=47.72 E-value=39 Score=26.81 Aligned_cols=49 Identities=14% Similarity=0.191 Sum_probs=35.4
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~L-----gIS~~rVrqi~~rALkKLR 484 (499)
.|+++|..+|.+-.-=.+...|.++|.+.+ ..+..+|.+.+.+-++||.
T Consensus 22 ~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~ 75 (96)
T 3rjp_A 22 SLTKREYDLLNILMTNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKID 75 (96)
T ss_dssp ECCHHHHHHHHHHHHTTTSCBCHHHHHHHHSSSCSSCCTHHHHHHHHHHHHHHC
T ss_pred EcCHHHHHHHHHHHhCCCeeEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhc
Confidence 689999998877542123568999999988 2677788776666666554
No 379
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=47.66 E-value=14 Score=31.53 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=21.6
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010835 454 ECL-TWEDISKRIGLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 454 eg~-SleEIAe~LgIS~~rVrqi~~rALkKLR 484 (499)
+.+ |..++|+.||||+.+|+. |+..|.
T Consensus 33 ~~lPse~~La~~~~vSr~tvr~----Al~~L~ 60 (126)
T 3by6_A 33 DQLPSVRETALQEKINPNTVAK----AYKELE 60 (126)
T ss_dssp CEECCHHHHHHHHTCCHHHHHH----HHHHHH
T ss_pred CcCcCHHHHHHHHCcCHHHHHH----HHHHHH
Confidence 446 999999999999999974 555554
No 380
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=47.61 E-value=24 Score=29.06 Aligned_cols=41 Identities=12% Similarity=0.023 Sum_probs=30.1
Q ss_pred hCCHHHHHHHHH-HhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 436 TLGEREREIIRL-YYGLDKECLTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 436 ~L~~rER~VI~L-ryGLd~eg~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
+-+..++.-|.+ .. ..+.|+.|+|+.+|||++.|.++...-
T Consensus 32 rWs~~~Kl~VV~~~~---~g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 32 RWVASRKAAVVKAVI---HGLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp CCCHHHHHHHHHHHH---TTSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHH---cCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 344555553334 43 467899999999999999999988763
No 381
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=47.29 E-value=13 Score=34.27 Aligned_cols=29 Identities=34% Similarity=0.431 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
++.++-.++|+.||||+.+|| .|+++|..
T Consensus 33 G~~L~e~~La~~lgVSRtpVR----EAL~~L~~ 61 (218)
T 3sxy_A 33 GEKLNVRELSEKLGISFTPVR----DALLQLAT 61 (218)
T ss_dssp TCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCEeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 355899999999999999996 66666653
No 382
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=46.99 E-value=8.1 Score=34.16 Aligned_cols=25 Identities=8% Similarity=0.130 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
..+|.++||..+|+|+++|++++.+
T Consensus 167 ~~~t~~~iA~~lG~sretlsR~l~~ 191 (194)
T 3dn7_A 167 QRVPQYLLASYLGFTPEYLSEIRKK 191 (194)
T ss_dssp -------------------------
T ss_pred HHCCHHHHHHHhCCCHHHHHHHHHh
Confidence 4689999999999999999866554
No 383
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=46.79 E-value=52 Score=28.48 Aligned_cols=45 Identities=22% Similarity=0.246 Sum_probs=33.7
Q ss_pred hCCHHHHHHHHHHhc-CCCCC---CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYG-LDKEC---LTWEDISKRIGLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 436 ~L~~rER~VI~LryG-Ld~eg---~SleEIAe~LgIS~~rVrqi~~rALkKLR 484 (499)
.++++++.|...--| ||.+| .+.+|||+.+|++...|. ++++.|+
T Consensus 16 ~~~~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve----~vL~~iQ 64 (130)
T 2k9m_A 16 ELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELE----KVRQKVL 64 (130)
T ss_dssp HCCSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHHHHH----HHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHH----HHHHHHh
Confidence 589999988776444 35555 689999999999999885 4455554
No 384
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.37 E-value=18 Score=28.08 Aligned_cols=51 Identities=4% Similarity=0.006 Sum_probs=36.3
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 486 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~ 486 (499)
..++.|..+|...|-.+ .......+||..+|++...|..+...-..+.|+.
T Consensus 13 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (75)
T 2da5_A 13 ERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAE 65 (75)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHS
T ss_pred cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHh
Confidence 35666666776666321 1223467899999999999999998887777653
No 385
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=45.14 E-value=11 Score=28.81 Aligned_cols=50 Identities=14% Similarity=-0.009 Sum_probs=35.2
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+++.+..+|...|-.+ .......+||..+|++...|..+...-..+.|+
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk 64 (70)
T 2cra_A 13 PYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 64 (70)
T ss_dssp CSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTS
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcc
Confidence 35666666776666221 122346789999999999999999887776654
No 386
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=45.09 E-value=23 Score=29.46 Aligned_cols=37 Identities=11% Similarity=0.107 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHh
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKK 490 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~~~ 490 (499)
...++..+|+.+||+.++|+++...-+.++...+..-
T Consensus 22 a~~gq~~vA~~iGV~~StISR~k~~~~~~~~~lLa~l 58 (97)
T 1xwr_A 22 AMLGTEKTAEAVGVDKSQISRWKRDWIPKFSMLLAVL 58 (97)
T ss_dssp HHHCHHHHHHHHTCCTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHH
Confidence 4578999999999999999998887777666665443
No 387
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=44.90 E-value=30 Score=28.39 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=36.2
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~L-----gIS~~rVrqi~~rALkKLR 484 (499)
.|+++|..+|.+-.-=.+...|.++|.+.+ ..+..+|.+.+.+-++||.
T Consensus 34 ~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 87 (110)
T 2pmu_A 34 SLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKID 87 (110)
T ss_dssp CCCHHHHHHHHHHHHTTTSCBCHHHHHHHHSCTTCCSSSCHHHHHHHHHHHHHC
T ss_pred ecCHHHHHHHHHHHHCCCEEEcHHHHHHHHcCCCCCCccchHHHHHHHHHHHhc
Confidence 589999998877541124568999999998 4677788877777666664
No 388
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=44.90 E-value=17 Score=27.80 Aligned_cols=50 Identities=16% Similarity=0.148 Sum_probs=35.8
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+++.+..+|...|-.+ .......+||..+|++...|..+...-..+.|+
T Consensus 15 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 66 (75)
T 2m0c_A 15 TFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRK 66 (75)
T ss_dssp SSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHH
Confidence 35666666666665221 123456789999999999999999988887764
No 389
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=44.71 E-value=4.6 Score=36.70 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 455 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 455 g~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+|.++||..+|+|+++|. |++++|++
T Consensus 164 ~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 190 (213)
T 1o5l_A 164 PVTLEELSRLFGCARPALS----RVFQELER 190 (213)
T ss_dssp -------------------------------
T ss_pred CCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 5799999999999999995 55556653
No 390
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=44.70 E-value=36 Score=27.65 Aligned_cols=49 Identities=10% Similarity=0.153 Sum_probs=36.2
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~L-----gIS~~rVrqi~~rALkKLR 484 (499)
.|+++|..+|.+-.-=.+...|.++|.+.+ ..+..+|.+.+.+-++||.
T Consensus 31 ~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 84 (106)
T 1gxq_A 31 EMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALE 84 (106)
T ss_dssp CCCHHHHHHHHHHHHSCSSEECHHHHHHHHTCSSSCCCTHHHHHHHHHHHHHHG
T ss_pred EcCHHHHHHHHHHHHCCCeeEcHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhc
Confidence 589999999887542124568999999998 4677788777766666664
No 391
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=44.17 E-value=42 Score=28.17 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=24.1
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
.++.++++||+.+|+|+.++.+...+.
T Consensus 25 ~~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 25 ESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp TSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 467999999999999999998888776
No 392
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=43.94 E-value=16 Score=35.22 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVG 476 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~ 476 (499)
+++.|..+||+..|||++++-...
T Consensus 138 ~~~~T~~~IA~~AGvs~gtlY~yF 161 (311)
T 4ich_A 138 YHNVRIHDIASELGTSNATIHYHF 161 (311)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred CccCCHHHHHHHhCCCchhHHHhC
Confidence 678999999999999999997653
No 393
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=43.78 E-value=24 Score=29.28 Aligned_cols=26 Identities=12% Similarity=-0.001 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.++.++++||+.+|+|+.++.+...+
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 21 AHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 46799999999999999999887654
No 394
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=43.74 E-value=12 Score=28.51 Aligned_cols=49 Identities=10% Similarity=0.093 Sum_probs=35.4
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR 484 (499)
.+++.+..+|...|-.+ .......+||..+|++...|..+...-..+.|
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 63 (70)
T 2djn_A 13 IYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIK 63 (70)
T ss_dssp SSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhc
Confidence 45677777777777321 11234678999999999999999887776654
No 395
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=43.60 E-value=20 Score=35.03 Aligned_cols=36 Identities=6% Similarity=-0.053 Sum_probs=29.4
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHC-------CCHHHHHHHHHHH
Q 010835 441 EREIIRLYYGLDKECLTWEDISKRIG-------LSRERVRQVGLVA 479 (499)
Q Consensus 441 ER~VI~LryGLd~eg~SleEIAe~Lg-------IS~~rVrqi~~rA 479 (499)
.|.+|.+.+ .+|++..+||+.|+ +|+.||..+..+-
T Consensus 11 ~R~~i~~~~---~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~ 53 (345)
T 3hot_A 11 TRTVLIFCF---HLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRF 53 (345)
T ss_dssp HHHHHHHHH---HTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHH---HcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 455565666 68999999999987 9999999998763
No 396
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=43.57 E-value=14 Score=27.39 Aligned_cols=49 Identities=12% Similarity=0.058 Sum_probs=35.1
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR 484 (499)
.+++.+..+|...|.-+ .......+||..+|++...|..+...-..+.|
T Consensus 9 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 59 (62)
T 2vi6_A 9 VFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCK 59 (62)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCG
T ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchh
Confidence 46777777887777321 11234678999999999999999877666544
No 397
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=43.55 E-value=11 Score=31.40 Aligned_cols=24 Identities=8% Similarity=0.166 Sum_probs=21.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 456 LTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 456 ~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
+|..|+|+.+|||+.|++.+...+
T Consensus 3 ~~i~e~A~~~gvs~~tLR~ye~~G 26 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYDNIE 26 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHHHTT
T ss_pred ccHHHHHHHHCcCHHHHHHHHHCC
Confidence 688999999999999999987654
No 398
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=43.39 E-value=28 Score=30.22 Aligned_cols=27 Identities=15% Similarity=0.078 Sum_probs=24.7
Q ss_pred CCCCCHHHHHHHHCC-CHHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGL-SRERVRQVGLVA 479 (499)
Q Consensus 453 ~eg~SleEIAe~LgI-S~~rVrqi~~rA 479 (499)
-.|+|+.+||...|| |+.||.+++.+-
T Consensus 26 ~~G~sl~~i~~~~~~ps~~T~~~W~~~~ 53 (140)
T 4dyq_A 26 SSGESLLKVCKRPGMPDKSTVFRWLAKH 53 (140)
T ss_dssp HTTCCHHHHHTSTTCCCHHHHHHHHHHC
T ss_pred HCCCcHHHHHhcCCCCCHHHHHHHHHcC
Confidence 488999999999999 999999998774
No 399
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=43.18 E-value=18 Score=33.61 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=22.5
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010835 453 KECL-TWEDISKRIGLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 453 ~eg~-SleEIAe~LgIS~~rVrqi~~rALkKLR 484 (499)
++.+ |-.++|+.||||+.+|| .|++.|.
T Consensus 28 G~~LPsE~eLa~~~gVSR~tVR----eAL~~L~ 56 (239)
T 1hw1_A 28 GTILPAERELSELIGVTRTTLR----EVLQRLA 56 (239)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHH----HHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHH----HHHHHHH
Confidence 3567 79999999999999997 5555554
No 400
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=43.12 E-value=13 Score=27.87 Aligned_cols=49 Identities=24% Similarity=0.236 Sum_probs=35.0
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR 484 (499)
.+++.+..+|.-.|.-+ .......+||..+|++...|..+......+.|
T Consensus 9 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 59 (66)
T 1bw5_A 9 VLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDK 59 (66)
T ss_dssp CCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHh
Confidence 35667777777776321 11234678999999999999999987776654
No 401
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=42.99 E-value=1.1e+02 Score=25.46 Aligned_cols=74 Identities=11% Similarity=0.134 Sum_probs=40.7
Q ss_pred hhcCCCCCCCcchhHHHHHHHHHHHHHHHHhh-hcccccccHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHH
Q 010835 297 IEKFDSSKGFKISTYVYWWIRQGVSRALVENS-RTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVR 375 (499)
Q Consensus 297 iekFDp~rG~kFsTYA~~wIR~aI~~al~~~~-R~vRip~~~~e~l~~irka~~~L~~~gr~pt~eEIA~~Lgis~e~v~ 375 (499)
..+|+++. +-.|...++.+.+.+.+.... ....++......+. .+...| ..+..+||+.+|++...+.
T Consensus 4 M~~~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~iL~-------~l~~~~-~~t~~ela~~l~~~~~tvs 72 (148)
T 3nrv_A 4 MQKINIDR---HATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIIS-------VLSSAS-DCSVQKISDILGLDKAAVS 72 (148)
T ss_dssp -CCSCGGG---CHHHHHHHHHHHHHHC----CCGGGTCCHHHHHHHH-------HHHHSS-SBCHHHHHHHHTCCHHHHH
T ss_pred cccccHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH-------HHHcCC-CCCHHHHHHHHCCCHHHHH
Confidence 44555443 334555566665555555443 22233333222222 222334 6789999999999999998
Q ss_pred HHHHhh
Q 010835 376 NATEAI 381 (499)
Q Consensus 376 ~~l~~~ 381 (499)
.++...
T Consensus 73 ~~l~~L 78 (148)
T 3nrv_A 73 RTVKKL 78 (148)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887765
No 402
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=42.93 E-value=18 Score=27.78 Aligned_cols=50 Identities=8% Similarity=0.023 Sum_probs=36.0
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
..++.+..+|...|-.+ ......++||..+|++...|+.+...-..+.|+
T Consensus 12 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 63 (74)
T 2ly9_A 12 KKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRN 63 (74)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHh
Confidence 35666666666665221 123456789999999999999999988877665
No 403
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=42.60 E-value=1.1e+02 Score=29.60 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
...|+.+||+.|+||..||.+++++
T Consensus 85 ~~~t~~~ia~~l~vs~~tV~r~L~~ 109 (345)
T 3hot_A 85 DAQTQKQLAEQLEVSQQAVSNRLRE 109 (345)
T ss_dssp SCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccchHHHHHHHHCCCHHHHHHHHHH
Confidence 4689999999999999999988876
No 404
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=42.35 E-value=22 Score=33.21 Aligned_cols=28 Identities=32% Similarity=0.488 Sum_probs=22.1
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 454 ECL-TWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 454 eg~-SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
+.+ +-.++|+.||||+.+|| .|++.|..
T Consensus 26 ~~LpsE~~La~~lgVSRtpVR----EAL~~L~~ 54 (239)
T 2di3_A 26 DHLPSERALSETLGVSRSSLR----EALRVLEA 54 (239)
T ss_dssp CBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CcCCCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 457 56799999999999996 66666653
No 405
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=42.32 E-value=57 Score=27.89 Aligned_cols=46 Identities=13% Similarity=0.236 Sum_probs=35.4
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~L-----gIS~~rVrqi~~rALkKLR~ 485 (499)
++++.-+.|+.+-..-+....|.+||.+.+ ++|..|| +|.|+.|.+
T Consensus 15 r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTV----YR~L~~L~e 65 (136)
T 1mzb_A 15 KVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATV----YRVLTQFEA 65 (136)
T ss_dssp CCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHH----HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHH----HHHHHHHHH
Confidence 688888888887652111468999999999 8999999 567766654
No 406
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=42.14 E-value=21 Score=33.78 Aligned_cols=28 Identities=18% Similarity=0.173 Sum_probs=21.3
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 454 ECL-TWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 454 eg~-SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
+.+ |-.|+|+.+|||+.||| +|+..|..
T Consensus 31 ~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 59 (236)
T 3edp_A 31 MLMPNETALQEIYSSSRTTIR----RAVDLLVE 59 (236)
T ss_dssp C--CCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 456 89999999999999997 56666653
No 407
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=41.80 E-value=22 Score=29.15 Aligned_cols=49 Identities=8% Similarity=0.032 Sum_probs=36.0
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~L-----gIS~~rVrqi~~rALkKLR 484 (499)
.|+++|..+|.+-.-=.+...|.++|.+.+ ..+..+|++.+.+-++||.
T Consensus 31 ~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 84 (110)
T 1opc_A 31 PLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVE 84 (110)
T ss_dssp CCCHHHHHHHHHHHHSTTCCEEHHHHHHHHCCSSSCTTSSCHHHHHHHHHHHHC
T ss_pred EcCHHHHHHHHHHHHcCCceEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhh
Confidence 589999998877542124569999999999 5677788777766666664
No 408
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=41.79 E-value=12 Score=29.42 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 455 CLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 455 g~SleEIAe~LgIS~~rVrqi~~r 478 (499)
-+|..|+|+.+|||+.|++.+..+
T Consensus 5 ~~~i~e~A~~~gvs~~tlR~ye~~ 28 (81)
T 2jml_A 5 TLRIRTIARMTGIREATLRAWERR 28 (81)
T ss_dssp CEEHHHHHHTTSTTHHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHh
Confidence 378999999999999999998776
No 409
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=41.42 E-value=17 Score=27.98 Aligned_cols=51 Identities=16% Similarity=-0.020 Sum_probs=36.4
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 486 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~ 486 (499)
.+++.+..+|...|..+ .......+||..+|++...|..+...-..+.|+.
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 13 PYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp CSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHH
Confidence 34666666676666321 1223467899999999999999998888877753
No 410
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=41.14 E-value=22 Score=28.97 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=27.2
Q ss_pred hCCHHHHH-HHHHHhcCCCCCCCHHHHHHHH-CCCHHHHHHHHHH
Q 010835 436 TLGERERE-IIRLYYGLDKECLTWEDISKRI-GLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~-VI~LryGLd~eg~SleEIAe~L-gIS~~rVrqi~~r 478 (499)
.+..+-+. ||..-. ..+++..||++.+ |+|+.+|.+++.+
T Consensus 21 ~l~~~~~~~IL~~L~---~~~~~~~eL~~~l~gis~~~ls~~L~~ 62 (107)
T 2fsw_A 21 IFAGKWTLLIIFQIN---RRIIRYGELKRAIPGISEKMLIDELKF 62 (107)
T ss_dssp HHTSSSHHHHHHHHT---TSCEEHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHcCccHHHHHHHHH---hCCcCHHHHHHHcccCCHHHHHHHHHH
Confidence 34454443 443333 4679999999999 5999999766543
No 411
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=41.04 E-value=27 Score=27.78 Aligned_cols=50 Identities=16% Similarity=0.162 Sum_probs=37.0
Q ss_pred hhCCHHHHHHHHHHhcCCC-CC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLDK-EC----LTWEDISKRIGLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd~-eg----~SleEIAe~LgIS~~rVrqi~~rALkKLR 484 (499)
..+++.+..+|...|.-+. .+ ....+||..+|++...|..+......|.|
T Consensus 32 ~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 32 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp CCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 3578888888877773210 22 24668999999999999999988877754
No 412
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=40.80 E-value=23 Score=28.84 Aligned_cols=50 Identities=10% Similarity=0.054 Sum_probs=37.7
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+++.+..+|...|-.+ ......++||..+|++...|+.+...-..|.|+
T Consensus 31 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk 82 (96)
T 3nar_A 31 KKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKN 82 (96)
T ss_dssp SSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhh
Confidence 46777777777766221 122456789999999999999999988888775
No 413
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=40.75 E-value=25 Score=29.00 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 439 EREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 439 ~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
+-|+.+|...+ ...+-+..+.|+.||||+.|+...+.
T Consensus 57 ~~Er~~I~~aL--~~~~gn~~~AA~~LGIsR~TL~rkLk 93 (98)
T 1eto_A 57 EVEQPLLDMVM--QYTLGNQTRAALMMGINRGTLRKKLK 93 (98)
T ss_dssp HHHHHHHHHHH--HHTTTCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHhCCCHHHHHHHhCCCHHHHHHHHH
Confidence 44555554433 11345788999999999999975543
No 414
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=40.72 E-value=19 Score=33.95 Aligned_cols=27 Identities=33% Similarity=0.380 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~rALkKLR 484 (499)
+.++-.+||+.||||+.+|| .||++|.
T Consensus 50 ~~L~e~~La~~lgVSRtpVR----EAL~~L~ 76 (239)
T 2hs5_A 50 ARLSEPDICAALDVSRNTVR----EAFQILI 76 (239)
T ss_dssp CEECHHHHHHHHTCCHHHHH----HHHHHHH
T ss_pred CEeCHHHHHHHHCCCHHHHH----HHHHHHH
Confidence 55799999999999999997 5666654
No 415
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=40.66 E-value=19 Score=33.23 Aligned_cols=27 Identities=33% Similarity=0.515 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~rALkKLR 484 (499)
+.++-.++|+.||||+.+|| .|+++|.
T Consensus 38 ~~L~E~~La~~lgVSRtpVR----EAl~~L~ 64 (222)
T 3ihu_A 38 QRLVETDLVAHFGVGRNSVR----EALQRLA 64 (222)
T ss_dssp CEECHHHHHHHHTCCHHHHH----HHHHHHH
T ss_pred CccCHHHHHHHHCCCHHHHH----HHHHHHH
Confidence 56889999999999999997 5666665
No 416
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=40.62 E-value=7.9 Score=32.09 Aligned_cols=43 Identities=14% Similarity=0.109 Sum_probs=33.3
Q ss_pred hhCCHHHHHHHHHHhcCCCCCCCHHHHHHHHC----CCHHHHHHHHHHH
Q 010835 435 VTLGEREREIIRLYYGLDKECLTWEDISKRIG----LSRERVRQVGLVA 479 (499)
Q Consensus 435 ~~L~~rER~VI~LryGLd~eg~SleEIAe~Lg----IS~~rVrqi~~rA 479 (499)
..|++.|..|+..-.- .++.|..||++.++ ++..||...+.+-
T Consensus 31 ~~LT~~e~~VL~~L~~--~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rL 77 (99)
T 2k4b_A 31 FNVSNAELIVMRVIWS--LGEARVDEIYAQIPQELEWSLATVKTLLGRL 77 (99)
T ss_dssp CCCCCSCSHHHHHHHH--HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh--CCCCCHHHHHHHHhcccCCCHhhHHHHHHHH
Confidence 4689999888877642 35799999999997 5789997665543
No 417
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=40.24 E-value=20 Score=30.83 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHH-CCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRI-GLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~L-gIS~~rVrqi~~r 478 (499)
..+++..||++.+ |||+.+|.+++.+
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~ 72 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQA 72 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHH
Confidence 3679999999999 7999999766543
No 418
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=39.85 E-value=14 Score=29.05 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=35.4
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+++.+..+|...|..+ .......+||..+|++...|..+...-..|.|+
T Consensus 28 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 79 (84)
T 2kt0_A 28 VFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKR 79 (84)
T ss_dssp CCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTS
T ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 45667777777666321 122346789999999999999999877766553
No 419
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=39.05 E-value=42 Score=33.85 Aligned_cols=38 Identities=18% Similarity=0.179 Sum_probs=28.9
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 010835 442 REIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALE 481 (499)
Q Consensus 442 R~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALk 481 (499)
+.|+.+-+ ...+.|..|||+.+|+|+.||.++..+-++
T Consensus 19 ~~il~~l~--~~~~~sr~~la~~~~ls~~tv~~~v~~L~~ 56 (406)
T 1z6r_A 19 GAVYRLID--QLGPVSRIDLSRLAQLAPASITKIVHEMLE 56 (406)
T ss_dssp HHHHHHHH--SSCSCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HcCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 44666644 135799999999999999999888765443
No 420
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=39.02 E-value=27 Score=27.61 Aligned_cols=51 Identities=16% Similarity=0.183 Sum_probs=38.7
Q ss_pred hCCHHHHHHHHHHhcCCC-CC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDK-EC----LTWEDISKRIGLSRERVRQVGLVALEKLKHA 486 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~-eg----~SleEIAe~LgIS~~rVrqi~~rALkKLR~~ 486 (499)
.+++.+..+|...|.-+. .. ..-.+||..+|++...|..+......+.|+.
T Consensus 8 rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~ 63 (83)
T 1le8_B 8 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTI 63 (83)
T ss_dssp CCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccc
Confidence 367888888887773210 22 2466899999999999999999998888764
No 421
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=38.96 E-value=53 Score=29.77 Aligned_cols=32 Identities=25% Similarity=0.336 Sum_probs=27.0
Q ss_pred HHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 010835 350 RLEEKGVTPSVDRIAEYLNMSQKKVRNATEAI 381 (499)
Q Consensus 350 ~L~~~gr~pt~eEIA~~Lgis~e~v~~~l~~~ 381 (499)
.+.+.|..||..|||+.+|++...+...+...
T Consensus 17 ~~~~~g~~~s~~eia~~lgl~~~tv~~~l~~L 48 (196)
T 3k2z_A 17 FIEKNGYPPSVREIARRFRITPRGALLHLIAL 48 (196)
T ss_dssp HHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHcCCCcHHHHHHHHHH
Confidence 34567999999999999999998888877654
No 422
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=38.88 E-value=31 Score=31.27 Aligned_cols=38 Identities=11% Similarity=0.052 Sum_probs=30.3
Q ss_pred CCHHHHHHHHHHhcCCCCCCCHHHHHHHHC-CCHHHHHHHHH
Q 010835 437 LGEREREIIRLYYGLDKECLTWEDISKRIG-LSRERVRQVGL 477 (499)
Q Consensus 437 L~~rER~VI~LryGLd~eg~SleEIAe~Lg-IS~~rVrqi~~ 477 (499)
-.|.-..||.+-. ..++|..|||+.|| +|..+|++++.
T Consensus 21 a~P~Rl~il~~L~---~~~~~~~~l~~~l~~~~~~~~s~Hl~ 59 (182)
T 4g6q_A 21 HHPLRWRITQLLI---GRSLTTRELAELLPDVATTTLYRQVG 59 (182)
T ss_dssp TSHHHHHHHHHTT---TSCEEHHHHHHHCTTBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---hCCCCHHHHHHHhcCCCHHHHHHHHH
Confidence 4666667777655 57899999999996 99999987754
No 423
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=38.86 E-value=31 Score=27.94 Aligned_cols=53 Identities=4% Similarity=0.028 Sum_probs=37.6
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 488 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L~ 488 (499)
.+++.+..+|...|.-+ .......+||..+|++...|+.+...-..|.|+...
T Consensus 23 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 23 SFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhH
Confidence 34555666666655221 122346789999999999999999998888887643
No 424
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=38.85 E-value=30 Score=28.65 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=20.5
Q ss_pred CCCC--HHHHHHHH-CCCHHHHHHHHHH
Q 010835 454 ECLT--WEDISKRI-GLSRERVRQVGLV 478 (499)
Q Consensus 454 eg~S--leEIAe~L-gIS~~rVrqi~~r 478 (499)
.+.+ ..||++.+ |+|+.++.+++.+
T Consensus 39 g~~~~~~~eL~~~l~gis~~~ls~~L~~ 66 (111)
T 3df8_A 39 GSTRQNFNDIRSSIPGISSTILSRRIKD 66 (111)
T ss_dssp SSSCBCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHccCCCHHHHHHHHHH
Confidence 4566 99999999 9999999766543
No 425
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=38.81 E-value=65 Score=27.87 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=35.3
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~L-----gIS~~rVrqi~~rALkKLR~ 485 (499)
++++.-+.|+.+-..- ...+|.+||.+.+ ++|..|| +|.|+.|..
T Consensus 19 r~T~qR~~Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTV----YR~L~~L~e 68 (145)
T 2fe3_A 19 RITPQRHAILEYLVNS-MAHPTADDIYKALEGKFPNMSVATV----YNNLRVFRE 68 (145)
T ss_dssp CCCHHHHHHHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHH----HHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhH----HHHHHHHHH
Confidence 6888888888876531 2579999999999 8999999 566666654
No 426
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=38.54 E-value=28 Score=29.17 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=27.9
Q ss_pred HHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 444 IIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 444 VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
||.... ...+|+.|.|+.+|||.++|.++....
T Consensus 42 VV~~v~---~g~lS~~EAa~ry~Is~~ei~~W~r~y 74 (101)
T 2oa4_A 42 VVRGVI---YGLITLAEAKQTYGLSDEEFNSWVSAL 74 (101)
T ss_dssp HHHHHH---HTTCCHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHH---hCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 555554 478999999999999999999998765
No 427
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.51 E-value=37 Score=25.59 Aligned_cols=43 Identities=14% Similarity=0.220 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 010835 439 EREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALE 481 (499)
Q Consensus 439 ~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALk 481 (499)
+.+..+|...|-.+ .......+||..+|++...|+.+...-..
T Consensus 12 ~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRa 56 (64)
T 2e19_A 12 KNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQA 56 (64)
T ss_dssp HHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccC
Confidence 44555666666321 12235678999999999999999855443
No 428
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=38.50 E-value=16 Score=31.91 Aligned_cols=43 Identities=19% Similarity=0.308 Sum_probs=32.3
Q ss_pred hCCHHHHHHHHHHh-cCCCCCCCHHHHHH----HH--CCCHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYY-GLDKECLTWEDISK----RI--GLSRERVRQVGLVA 479 (499)
Q Consensus 436 ~L~~rER~VI~Lry-GLd~eg~SleEIAe----~L--gIS~~rVrqi~~rA 479 (499)
.|+..|+.-|+.++ - ...++|..+||+ .+ +|+++||+.++..-
T Consensus 11 ~lT~~qK~~i~~~~~~-~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 11 AITEHEKRALRHYFFQ-LQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCCSHHHHHHHHHHHS-SSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred cCCHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 56777776565554 1 125699999999 99 99999999988663
No 429
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=38.40 E-value=20 Score=32.08 Aligned_cols=23 Identities=0% Similarity=-0.022 Sum_probs=21.2
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHH
Q 010835 457 TWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 457 SleEIAe~LgIS~~rVrqi~~rA 479 (499)
|++|+|+.+|+|+++|++++...
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g~ 44 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTRG 44 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHSS
T ss_pred CHHHHHHHhCcCHHHHHHHHhCC
Confidence 99999999999999999998753
No 430
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=38.03 E-value=1.6e+02 Score=23.97 Aligned_cols=64 Identities=17% Similarity=0.235 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHHHHhh
Q 010835 311 YVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKG-VTPSVDRIAEYLNMSQKKVRNATEAI 381 (499)
Q Consensus 311 YA~~wIR~aI~~al~~~~R~vRip~~~~e~l~~irka~~~L~~~g-r~pt~eEIA~~Lgis~e~v~~~l~~~ 381 (499)
|..+.+...+.+.+........++......+.. +...+ .+.+..+||+.+|++...+..++...
T Consensus 7 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~vL~~-------l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~L 71 (139)
T 3eco_A 7 YLFRMISHEMKQKADQKLEQFDITNEQGHTLGY-------LYAHQQDGLTQNDIAKALQRTGPTVSNLLRNL 71 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHH-------HHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH-------HHhcCCCCcCHHHHHHHhCCCcccHHHHHHHH
Confidence 445556666666666655444444333322222 22333 45689999999999999999887765
No 431
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=37.63 E-value=51 Score=26.40 Aligned_cols=49 Identities=14% Similarity=0.057 Sum_probs=33.4
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~L-----gIS~~rVrqi~~rALkKLR 484 (499)
.|+++|..+|.+-.-=.++..|.++|.+.+ ..+..+|.+.+.+-++||.
T Consensus 28 ~Lt~~e~~lL~~L~~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~ 81 (102)
T 3zq7_A 28 HLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLE 81 (102)
T ss_dssp CCCHHHHHHHHHHHHTTTCEEEHHHHHHHHTSSSCSTTHHHHHHHHHHHHHHHC
T ss_pred EcCHHHHHHHHHHHHCCCeeECHHHHHHHhcCCCCCCccchHHHHHHHHHHHhh
Confidence 589999998877541113458999999988 3566677666665555554
No 432
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=36.64 E-value=30 Score=29.93 Aligned_cols=24 Identities=21% Similarity=0.236 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVG 476 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~ 476 (499)
+++.|.++||+..|||++++-++.
T Consensus 25 ~~~~t~~~IA~~agvs~~tlY~~F 48 (192)
T 2zcm_A 25 YDGTTLDDISKSVNIKKASLYYHY 48 (192)
T ss_dssp TTTCCHHHHHHHTTCCHHHHHHHT
T ss_pred cccCCHHHHHHHhCCChHHHHHHC
Confidence 688999999999999999997643
No 433
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=36.49 E-value=1.9e+02 Score=24.11 Aligned_cols=65 Identities=9% Similarity=0.009 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 010835 310 TYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAI 381 (499)
Q Consensus 310 TYA~~wIR~aI~~al~~~~R~vRip~~~~e~l~~irka~~~L~~~gr~pt~eEIA~~Lgis~e~v~~~l~~~ 381 (499)
.|..+.+.+.+.+.+........++......+. .+...+...+..+||+.++++...+..++...
T Consensus 14 ~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL~-------~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~L 78 (150)
T 3fm5_A 14 GFLLSRVGGMVLGAVNKALVPTGLRVRSYSVLV-------LACEQAEGVNQRGVAATMGLDPSQIVGLVDEL 78 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHH-------HHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH-------HHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHH
Confidence 455555666666666655544445433322222 22233434589999999999999999887765
No 434
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=36.12 E-value=81 Score=26.09 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=24.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR 484 (499)
.-++|+.+||+.||-...||.....+.-+.++
T Consensus 48 ~t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~ 79 (101)
T 3pvv_A 48 LTDLSLPKIGQAFGRDHTTVMYAQRKILSEMA 79 (101)
T ss_dssp HCCCCHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 36799999999999999999655555444443
No 435
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=35.98 E-value=9.7 Score=28.45 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=33.3
Q ss_pred hCCHHHHHHHHHHh---cCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYY---GLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 436 ~L~~rER~VI~Lry---GLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR 484 (499)
.+++.+..+|.-.| ..+ .......+||..+|++...|..+......+.|
T Consensus 9 ~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~k 62 (64)
T 1du6_A 9 HMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 62 (64)
T ss_dssp SSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSS
T ss_pred cCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhc
Confidence 35566666776665 211 11234678999999999999999887765543
No 436
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=35.96 E-value=34 Score=28.31 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=35.9
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~L-----gIS~~rVrqi~~rALkKLR 484 (499)
.|+++|..+|.+-.-=.+...|.++|.+.+ ..+..+|.+.+.+-++||.
T Consensus 28 ~Lt~~E~~lL~~L~~~~g~vvsre~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 81 (112)
T 2jzy_A 28 HLTGKEYVLLELLLQRTGEVLPRSLISSLVWNMNFDSDTNVIDVAVRRLRSKID 81 (112)
T ss_dssp CCCHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCCSSCSTTHHHHHHHHHHTTTT
T ss_pred ecCHHHHHHHHHHHHCCCceEcHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhc
Confidence 589999998877541124569999999998 4667788777776666663
No 437
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=35.92 E-value=34 Score=35.08 Aligned_cols=43 Identities=12% Similarity=0.032 Sum_probs=33.3
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|+..|-.||..-+.-..+++|..|||+.++++.++|.+++.|
T Consensus 401 ~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~ 443 (487)
T 1hsj_A 401 NLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQK 443 (487)
T ss_dssp CCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 5899998888776521115799999999999999999765544
No 438
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=35.86 E-value=32 Score=29.54 Aligned_cols=24 Identities=17% Similarity=-0.085 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVG 476 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~ 476 (499)
+++.|.++||+..|||++++-+..
T Consensus 20 ~~~~ti~~Ia~~agvs~~t~Y~~F 43 (194)
T 3bqz_B 20 YNATTTGEIVKLSESSKGNLYYHF 43 (194)
T ss_dssp TTTCCHHHHHHHTTCCHHHHHHHT
T ss_pred CccCCHHHHHHHhCCCchhHHHhC
Confidence 688999999999999999997653
No 439
>1hkq_A REPA, replication protein; DNA binding protein, winged-helix, PPS10 plasmid, replication initiator dimer.; 2.75A {Pseudomonas syringae PV} SCOP: a.4.5.10
Probab=35.56 E-value=73 Score=27.21 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=43.6
Q ss_pred HHHHHHHhhCCHHHHHHHHHHhcC-CCC---------CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 428 EVNKLIIVTLGEREREIIRLYYGL-DKE---------CLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 428 ~L~~~L~~~L~~rER~VI~LryGL-d~e---------g~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.|-.+- ..|+..|+.||.+.... +.+ ..+..|+++.+|++..+.-+.+..|.+.|..
T Consensus 11 ~Li~A~-y~Ltl~E~rll~~~is~i~~~~~~~~~~~~~i~~~e~~~~~~~~~~~aY~~lk~a~~~L~~ 77 (132)
T 1hkq_A 11 KLIESS-HTLTLNEKRLVLCAASLIDSRKPLPKDGYLTIRADTFAEVFGIDVKHAYAALDDAATKLFN 77 (132)
T ss_dssp HHHHHH-HTSCHHHHHHHHHHHHTCCTTSCCCGGGEEEEEHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred hHhhcc-CCCCHHHHHHHHHHHHhCCcCCCCCCCCEEEEEHHHHHHHHCCCcchHHHHHHHHHHHHhh
Confidence 344555 68999999999885544 211 2679999999999999888888888888764
No 440
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=35.10 E-value=25 Score=29.92 Aligned_cols=23 Identities=13% Similarity=0.081 Sum_probs=20.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQV 475 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi 475 (499)
+++.|..+||+..|||++|+-..
T Consensus 30 ~~~~tv~~Ia~~agvs~~t~Y~~ 52 (177)
T 3kkc_A 30 YSKITVQDVIGLANVGRSTFYSH 52 (177)
T ss_dssp TTTCCHHHHHHHHCCCHHHHTTT
T ss_pred hhHhhHHHHHHHhCCcHhhHHHH
Confidence 67899999999999999998653
No 441
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=35.01 E-value=20 Score=27.70 Aligned_cols=49 Identities=10% Similarity=0.039 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 437 LGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 437 L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
+++.+..+|...|..+ .......+||..+|++...|+.+...-..|.|+
T Consensus 11 ~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr 61 (69)
T 2l9r_A 11 MSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKR 61 (69)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhh
Confidence 4555555555555211 122346789999999999999998877766553
No 442
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=34.80 E-value=38 Score=25.44 Aligned_cols=26 Identities=8% Similarity=0.422 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhh
Q 010835 356 VTPSVDRIAEYLNMSQKKVRNATEAI 381 (499)
Q Consensus 356 r~pt~eEIA~~Lgis~e~v~~~l~~~ 381 (499)
.+.+..|||+.+|++...|......+
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra 54 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKA 54 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 56789999999999999999876654
No 443
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=34.41 E-value=45 Score=26.88 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=39.1
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHC---------------CCHHHHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIG---------------LSRERVRQVGLVALEKLKHAAR 488 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~Lg---------------IS~~rVrqi~~rALkKLR~~L~ 488 (499)
.+++.+..+|.-.|--+ ......++||+.+| |+...|..+...-..+.|+...
T Consensus 13 ~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 13 TWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 35666777777766321 11234678999999 9999999999999888887654
No 444
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=34.35 E-value=45 Score=25.11 Aligned_cols=31 Identities=10% Similarity=0.209 Sum_probs=24.9
Q ss_pred HHHcCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 010835 351 LEEKGVTPSVDRIAEYLNMSQKKVRNATEAI 381 (499)
Q Consensus 351 L~~~gr~pt~eEIA~~Lgis~e~v~~~l~~~ 381 (499)
|.+.+...+..|||+.+|++...|...+...
T Consensus 19 L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L 49 (67)
T 2heo_A 19 LSDDGGPVAIFQLVKKCQVPKKTLNQVLYRL 49 (67)
T ss_dssp HHHHCSCEEHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHcCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344556789999999999999999887765
No 445
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=34.23 E-value=38 Score=29.54 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVG 476 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~ 476 (499)
+++.|.++||+..|||++++-++.
T Consensus 32 ~~~~ti~~IA~~agvs~~t~Y~~F 55 (212)
T 3knw_A 32 FVGVGLQEILKTSGVPKGSFYHYF 55 (212)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHC
T ss_pred CccCCHHHHHHHhCCChHHHHHHC
Confidence 688999999999999999997653
No 446
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=34.15 E-value=38 Score=29.52 Aligned_cols=24 Identities=17% Similarity=0.212 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVG 476 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~ 476 (499)
+++.|.++||+..|||++|+-.+.
T Consensus 30 ~~~~t~~~IA~~agvsk~tlY~~F 53 (192)
T 2fq4_A 30 FKAVTVDKIAERAKVSKATIYKWW 53 (192)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred cccccHHHHHHHcCCCHHHHHHHC
Confidence 789999999999999999997654
No 447
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=34.10 E-value=55 Score=29.17 Aligned_cols=24 Identities=17% Similarity=0.116 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
...|.+|||+.+|+|+..|++++.
T Consensus 43 ~~~s~~eIA~~~~i~~~~l~kil~ 66 (159)
T 3lwf_A 43 GPISLRSIAQDKNLSEHYLEQLIG 66 (159)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHH
Confidence 468999999999999998875544
No 448
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=34.06 E-value=30 Score=32.73 Aligned_cols=28 Identities=32% Similarity=0.417 Sum_probs=22.4
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 454 ECL-TWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 454 eg~-SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
+.+ |..|+|+.+|||+.||| +|+..|..
T Consensus 32 ~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 60 (243)
T 2wv0_A 32 MPLPSEREYAEQFGISRMTVR----QALSNLVN 60 (243)
T ss_dssp CBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHH----HHHHHHHH
Confidence 456 89999999999999997 46666653
No 449
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=33.81 E-value=38 Score=29.32 Aligned_cols=24 Identities=8% Similarity=-0.169 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVG 476 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~ 476 (499)
+++.|..+||+..|||++++-.+.
T Consensus 30 ~~~~t~~~Ia~~agvs~~t~Y~~F 53 (202)
T 3lwj_A 30 YYNTSIRDIIALSEVGTGTFYNYF 53 (202)
T ss_dssp TTTCCHHHHHHHHCSCHHHHHHHC
T ss_pred cccCCHHHHHHHhCCCchhHHHHc
Confidence 688999999999999999997643
No 450
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=33.80 E-value=32 Score=29.28 Aligned_cols=23 Identities=9% Similarity=0.083 Sum_probs=20.8
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQV 475 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi 475 (499)
+++.|..+||+..|||++++-.+
T Consensus 26 ~~~~ti~~Ia~~agvs~~t~Y~~ 48 (188)
T 3qkx_A 26 LNQLSMLKLAKEANVAAGTIYLY 48 (188)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHH
T ss_pred cccCCHHHHHHHhCCCcchHHHH
Confidence 68899999999999999998754
No 451
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=33.69 E-value=40 Score=28.91 Aligned_cols=24 Identities=25% Similarity=0.113 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVG 476 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~ 476 (499)
+++.|.++||+..|||++++-.+.
T Consensus 20 y~~~s~~~Ia~~agvskgtlY~~F 43 (179)
T 2eh3_A 20 YQGTSVEEIVKRANLSKGAFYFHF 43 (179)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHC
T ss_pred CccCCHHHHHHHhCCCcHHHHHHc
Confidence 789999999999999999996653
No 452
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=33.62 E-value=42 Score=29.01 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVG 476 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~ 476 (499)
+++.|.++||+..|||++|+-.+.
T Consensus 21 ~~~~s~~~IA~~agvsk~t~Y~~F 44 (190)
T 3vpr_A 21 YEATSVQDLAQALGLSKAALYHHF 44 (190)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHc
Confidence 789999999999999999996653
No 453
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=33.50 E-value=71 Score=28.33 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=28.2
Q ss_pred HHHHHHHHHHhcCCCCCCCHHHHHHHH-----CCCHHHHHHHHH
Q 010835 439 EREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGL 477 (499)
Q Consensus 439 ~rER~VI~LryGLd~eg~SleEIAe~L-----gIS~~rVrqi~~ 477 (499)
+|+..|+.+-- ...-.|++|+++.| ++|+.||++-+.
T Consensus 5 ~R~~~I~~li~--~~~~~tq~eL~~~L~~~G~~VtqaTisRDL~ 46 (149)
T 1b4a_A 5 QRHIKIREIIM--SNDIETQDELVDRLREAGFNVTQATVSRDIK 46 (149)
T ss_dssp HHHHHHHHHHH--HSCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHH--HCCCccHHHHHHHHHHcCCCcCHHHHHHHHH
Confidence 56666766632 03568999999999 999999987655
No 454
>3m8j_A FOCB protein; all-alpha, helix-turn-helix, transcription; 1.40A {Escherichia coli}
Probab=33.28 E-value=99 Score=26.29 Aligned_cols=45 Identities=11% Similarity=0.160 Sum_probs=35.6
Q ss_pred hCCHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 487 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~~L 487 (499)
-=+++=..-|+-++ ..|++.++++++.||+.+.. .+++++|.+.-
T Consensus 44 IrSekII~ALrdyL---V~G~srkeaCe~~gV~~syf----S~~L~rL~~v~ 88 (111)
T 3m8j_A 44 IHSDRVILAMKDYL---VSGHSRKDVCEKYQMNNGYF----STTLGRLTRLN 88 (111)
T ss_dssp CCCHHHHHHHHHHH---TTCCCHHHHHHHTTCCHHHH----HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---HcCCcHHHHHHHhCCCHHHH----HHHHHHHHHHH
Confidence 33566667778888 89999999999999997766 57777777644
No 455
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=33.13 E-value=33 Score=29.55 Aligned_cols=24 Identities=8% Similarity=-0.021 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVG 476 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~ 476 (499)
+++.|.++||+..|||++++-.+.
T Consensus 26 ~~~~t~~~Ia~~agvs~~t~Y~~F 49 (206)
T 3dew_A 26 FYGVSIRELAQAAGASISMISYHF 49 (206)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHS
T ss_pred cccCcHHHHHHHhCCCHHHHHHHc
Confidence 678999999999999999997664
No 456
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=33.05 E-value=32 Score=33.29 Aligned_cols=28 Identities=21% Similarity=0.128 Sum_probs=22.5
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 454 ECL-TWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 454 eg~-SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
+.+ |-.|+|+.+|||+.||| +|+..|..
T Consensus 51 ~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 79 (272)
T 3eet_A 51 TRLPSQARIREEYGVSDTVAL----EARKVLMA 79 (272)
T ss_dssp SBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 456 89999999999999997 56666553
No 457
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=32.98 E-value=34 Score=29.58 Aligned_cols=23 Identities=22% Similarity=0.251 Sum_probs=20.7
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQV 475 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi 475 (499)
+++.|.++||+..|||++++-.+
T Consensus 29 ~~~~s~~~Ia~~agvs~~t~Y~~ 51 (203)
T 3b81_A 29 YENTTLAFIINKLGISKGALYHY 51 (203)
T ss_dssp STTCCHHHHHHHHTCCHHHHHTT
T ss_pred cccCcHHHHHHHhCCCchhHHHH
Confidence 68899999999999999998653
No 458
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=32.97 E-value=30 Score=32.61 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=22.4
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 454 ECL-TWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 454 eg~-SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
+.+ |..|+|+.+|||+.||| +|+..|..
T Consensus 27 ~~lPse~~La~~~~vSr~tvr----~Al~~L~~ 55 (239)
T 3bwg_A 27 DKLPVLETLMAQFEVSKSTIT----KSLELLEQ 55 (239)
T ss_dssp CBCCCHHHHHHHTTCCHHHHH----HHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 456 89999999999999997 46666653
No 459
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=32.93 E-value=39 Score=27.45 Aligned_cols=50 Identities=4% Similarity=-0.063 Sum_probs=35.8
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
..+..|..+|.-.|..+ .......+||..+|++...|+.+...-..|.|+
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk 68 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKAL 68 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHH
Confidence 34555555665555221 234567789999999999999999988877765
No 460
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=32.84 E-value=1.8e+02 Score=22.87 Aligned_cols=25 Identities=12% Similarity=0.076 Sum_probs=21.5
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHhh
Q 010835 357 TPSVDRIAEYLNMSQKKVRNATEAI 381 (499)
Q Consensus 357 ~pt~eEIA~~Lgis~e~v~~~l~~~ 381 (499)
.+++++||+.+|+++..+.......
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 6789999999999999998876553
No 461
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=32.76 E-value=41 Score=24.89 Aligned_cols=27 Identities=4% Similarity=0.262 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhc
Q 010835 356 VTPSVDRIAEYLNMSQKKVRNATEAIG 382 (499)
Q Consensus 356 r~pt~eEIA~~Lgis~e~v~~~l~~~~ 382 (499)
...+..|||+.+|++...|...+..+.
T Consensus 24 ~g~s~~eIA~~lgis~~tV~~~~~ra~ 50 (68)
T 2p7v_B 24 TDYTLEEVGKQFDVTRERIRQIEAKAL 50 (68)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 467899999999999999998777653
No 462
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=32.72 E-value=30 Score=32.86 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=22.1
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010835 454 ECL-TWEDISKRIGLSRERVRQVGLVALEKLK 484 (499)
Q Consensus 454 eg~-SleEIAe~LgIS~~rVrqi~~rALkKLR 484 (499)
+.+ |-.|+|+.+|||+.||| +|+..|.
T Consensus 34 ~~lPse~~La~~~~vSr~tvr----~Al~~L~ 61 (248)
T 3f8m_A 34 DPFPAEREIAEQFEVARETVR----QALRELL 61 (248)
T ss_dssp CBCCCHHHHHHHTTCCHHHHH----HHHHHHH
T ss_pred CcCcCHHHHHHHHCcCHHHHH----HHHHHHH
Confidence 556 89999999999999997 5565554
No 463
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=32.61 E-value=26 Score=32.69 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.++.|..++|+.||+|+++|++.+.+
T Consensus 25 ~~~~s~s~aA~~L~isq~avSr~I~~ 50 (230)
T 3cta_A 25 RAYLTSSKLADMLGISQQSASRIIID 50 (230)
T ss_dssp EEECCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 35789999999999999999876643
No 464
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=32.43 E-value=33 Score=29.92 Aligned_cols=24 Identities=8% Similarity=0.085 Sum_probs=20.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
+..|.+|||+.+|+|+..|++++.
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~ 52 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMS 52 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHH
Confidence 468999999999999998865543
No 465
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=32.36 E-value=51 Score=28.36 Aligned_cols=24 Identities=25% Similarity=0.202 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVG 476 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~ 476 (499)
+++.|.++||+..|||++++-++.
T Consensus 26 ~~~~t~~~IA~~Agvs~~tly~~F 49 (194)
T 3dpj_A 26 FAQTSFVDISAAVGISRGNFYYHF 49 (194)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred cccCCHHHHHHHHCCChHHHHHHc
Confidence 689999999999999999997653
No 466
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=32.20 E-value=2.4e+02 Score=24.18 Aligned_cols=65 Identities=9% Similarity=0.028 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHhh
Q 010835 310 TYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAI 381 (499)
Q Consensus 310 TYA~~wIR~aI~~al~~~~R~vRip~~~~e~l~~irka~~~L~~~gr~pt~eEIA~~Lgis~e~v~~~l~~~ 381 (499)
.|....+...+.+.+........++......+. .+...+-..+..+||+.+|++...+..++...
T Consensus 28 ~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL~-------~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~L 92 (166)
T 3deu_A 28 GSDLARLVRIWRALIDHRLKPLELTQTHWVTLH-------NIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQL 92 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHH-------HHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHH-------HHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHH
Confidence 345555556666666555544444433222222 22233445789999999999999999887765
No 467
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=32.10 E-value=77 Score=26.56 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLVA 479 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~rA 479 (499)
++.|+++||+.+|+|+.+..+...+.
T Consensus 92 ~~~sl~~lA~~~g~S~~~f~r~Fk~~ 117 (133)
T 1u8b_A 92 TPVTLEALADQVAMSPFHLHRLFKAT 117 (133)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 67999999999999988887766553
No 468
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=31.99 E-value=28 Score=30.32 Aligned_cols=24 Identities=21% Similarity=0.288 Sum_probs=20.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
...|.+|||+.+|+|+..|++++.
T Consensus 27 ~~~s~~~IA~~~~i~~~~l~kil~ 50 (143)
T 3t8r_A 27 GCISLKSIAEENNLSDLYLEQLVG 50 (143)
T ss_dssp CCEEHHHHHHHTTCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHH
Confidence 358999999999999998875544
No 469
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=31.99 E-value=47 Score=33.91 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=28.5
Q ss_pred HHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 010835 442 REIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALE 481 (499)
Q Consensus 442 R~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALk 481 (499)
+.|+.+-+- ..+.|..|||+.+|+|+.||.++..+-++
T Consensus 42 ~~il~~l~~--~~~~sr~ela~~~gls~~tv~~~v~~L~~ 79 (429)
T 1z05_A 42 GRVYKLIDQ--KGPISRIDLSKESELAPASITKITRELID 79 (429)
T ss_dssp HHHHHHHHH--HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 446655431 35799999999999999999988765443
No 470
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=31.83 E-value=44 Score=29.08 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQV 475 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi 475 (499)
+++.|..+||+..|||++++-.+
T Consensus 32 ~~~~ti~~Ia~~agvs~~t~Y~~ 54 (220)
T 3lhq_A 32 VSATSLAEIANAAGVTRGAIYWH 54 (220)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHH
T ss_pred cccCCHHHHHHHhCCCceeehhh
Confidence 68899999999999999999764
No 471
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=31.83 E-value=37 Score=29.17 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=20.8
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQV 475 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi 475 (499)
+++.|.++||+..|||++++-.+
T Consensus 25 ~~~~t~~~IA~~agvs~~t~Y~~ 47 (199)
T 3qbm_A 25 YAGTAISDIMAATGLEKGGIYRH 47 (199)
T ss_dssp STTCCHHHHHHHHTCCHHHHHTT
T ss_pred cCcCCHHHHHHHhCCCccHHHHh
Confidence 78999999999999999998653
No 472
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=31.69 E-value=48 Score=28.80 Aligned_cols=24 Identities=21% Similarity=0.178 Sum_probs=21.7
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVG 476 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~ 476 (499)
+++.|..+||+..|||++++-.+.
T Consensus 34 ~~~~t~~~Ia~~agvs~~t~Y~~F 57 (213)
T 2qtq_A 34 VVDISLSELSLRSGLNSALVKYYF 57 (213)
T ss_dssp SSCCCHHHHHHHHCCCHHHHHHHH
T ss_pred cccccHHHHHHHhCCChhhHhHhc
Confidence 789999999999999999997654
No 473
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=31.68 E-value=48 Score=31.22 Aligned_cols=24 Identities=8% Similarity=0.148 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
.++|..|||+.+|++++||.+++.
T Consensus 22 ~~~~~~ela~~~gl~~stv~r~l~ 45 (249)
T 1mkm_A 22 GDVSVSEIAEKFNMSVSNAYKYMV 45 (249)
T ss_dssp SCBCHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 479999999999999999976655
No 474
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=31.52 E-value=40 Score=31.61 Aligned_cols=28 Identities=43% Similarity=0.553 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
++.+..+||+.||+|+.+|+ .++++|++
T Consensus 29 ~~V~~~~LA~~LgvS~~SV~----~~lkkL~e 56 (200)
T 2p8t_A 29 EPLGRKQISERLELGEGSVR----TLLRKLSH 56 (200)
T ss_dssp SCBCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCccHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 67899999999999999996 55566654
No 475
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=31.46 E-value=37 Score=28.98 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=21.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVG 476 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~ 476 (499)
+++.|..+||+..|||++++-.+.
T Consensus 28 ~~~~t~~~IA~~agvs~~t~Y~~F 51 (191)
T 3on4_A 28 YNAFSFKDIATAINIKTASIHYHF 51 (191)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred cccCCHHHHHHHhCCCcchhhhcC
Confidence 688999999999999999997653
No 476
>3pxp_A Helix-turn-helix domain protein; DNA-binding, basic helix-loop-helix motif, BHLH motif, lambd repressor-like DNA-binding fold; HET: MSE MYR; 2.30A {Chloroflexus aurantiacus}
Probab=31.45 E-value=47 Score=32.75 Aligned_cols=25 Identities=16% Similarity=0.225 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
.|+|++|+|+.+|||..+|.++++-
T Consensus 24 ~gLtqeelA~~~gvS~~~is~iE~G 48 (292)
T 3pxp_A 24 RVWTQEVLAERTQLPKRTIERIENG 48 (292)
T ss_dssp CBCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 6799999999999999999999864
No 477
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=31.44 E-value=37 Score=28.96 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=20.9
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQV 475 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi 475 (499)
+++.|.++||+..|||++++-.+
T Consensus 26 ~~~~ti~~Ia~~agvs~~t~Y~~ 48 (194)
T 2g7s_A 26 YNSFSYADISQVVGIRNASIHHH 48 (194)
T ss_dssp GGGCCHHHHHHHHCCCHHHHHHH
T ss_pred cccCCHHHHHHHhCCCchHHHHH
Confidence 67899999999999999998764
No 478
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=31.42 E-value=32 Score=30.29 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=36.5
Q ss_pred hCCHHHHHHHHHHhcCC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 436 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 436 ~L~~rER~VI~LryGLd--~eg~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.+++.+..+|...|-.+ .......+||..+|++...|+.+....+.|.|+
T Consensus 99 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 99 SFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred ccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 46677777777766321 112346789999999999999999988887663
No 479
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=31.27 E-value=53 Score=28.62 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=20.7
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQV 475 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi 475 (499)
+++.|..+||+..|||++++-..
T Consensus 30 ~~~~ti~~Ia~~agvs~~t~Y~~ 52 (189)
T 3vp5_A 30 FHEAKIMHIVKALDIPRGSFYQY 52 (189)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHH
T ss_pred cccccHHHHHHHhCCChHHHHHH
Confidence 67899999999999999998754
No 480
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=31.26 E-value=37 Score=29.86 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQ 474 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrq 474 (499)
+++.|..+||+..|||++++-.
T Consensus 30 y~~ts~~~IA~~agvs~gtlY~ 51 (205)
T 1rkt_A 30 FELTTMKDVVEESGFSRGGVYL 51 (205)
T ss_dssp STTCCHHHHHHHHTSCHHHHHT
T ss_pred cccCCHHHHHHHHCCCcchhhh
Confidence 7899999999999999999864
No 481
>3onq_A Regulator of polyketide synthase expression; structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Bifidobacterium adolescentis}
Probab=31.08 E-value=59 Score=31.29 Aligned_cols=40 Identities=18% Similarity=0.107 Sum_probs=33.0
Q ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010835 441 EREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 483 (499)
Q Consensus 441 ER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~rALkKL 483 (499)
-...|..++ ..+.+..+.|+.|+|.+.||+.++.|.-+.+
T Consensus 198 ll~TL~~yl---~~~~~~~~tA~~L~iHrNTl~yRL~ri~~l~ 237 (262)
T 3onq_A 198 TYLTVSTFL---KYGSSLENTAKELNVHPNTVRYRLKRAAETT 237 (262)
T ss_dssp HHHHHHHHH---HTTTCHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HcCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 345666777 5789999999999999999999988876554
No 482
>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*
Probab=31.06 E-value=87 Score=29.18 Aligned_cols=51 Identities=22% Similarity=0.291 Sum_probs=39.4
Q ss_pred cccccHHHHHHHHHHHHHHHHHcCCC-CCHHHHHHHhCCCHHHHHHHHHhhc
Q 010835 332 RLPNHLHERLGLIRNAKLRLEEKGVT-PSVDRIAEYLNMSQKKVRNATEAIG 382 (499)
Q Consensus 332 Rip~~~~e~l~~irka~~~L~~~gr~-pt~eEIA~~Lgis~e~v~~~l~~~~ 382 (499)
++|..+.+++-...+.-..|.+.|.+ .+..|||+.+|+++..|+.-+...+
T Consensus 2 ~i~~~~~~Rl~~y~r~l~~l~~~g~~~iss~~l~~~~~~~~~~iRkdls~~g 53 (211)
T 2dt5_A 2 KVPEAAISRLITYLRILEELEAQGVHRTSSEQLGGLAQVTAFQVRKDLSYFG 53 (211)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHTSCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcCCcEECHHHHHHHhCCCHHHeechHHHHH
Confidence 35666666666666666777777765 5899999999999999998877653
No 483
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=30.99 E-value=54 Score=28.58 Aligned_cols=23 Identities=17% Similarity=0.276 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQV 475 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi 475 (499)
+++.|.++||+..|||++++-.+
T Consensus 28 ~~~~s~~~IA~~aGvs~gtlY~y 50 (194)
T 2nx4_A 28 IEAANMRDIATEAGYTNGALSHY 50 (194)
T ss_dssp TTTCCHHHHHHHHTCCHHHHHHH
T ss_pred cccCCHHHHHHHhCCCcchHHHh
Confidence 78999999999999999999765
No 484
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=30.93 E-value=44 Score=29.38 Aligned_cols=23 Identities=13% Similarity=0.234 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQV 475 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi 475 (499)
+++.|..+||+..|||++++-.+
T Consensus 28 ~~~~s~~~IA~~aGvs~~t~Y~~ 50 (210)
T 3vib_A 28 IARTSLNEIAQAAGVTRDALYWH 50 (210)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHH
T ss_pred cccCCHHHHHHHHCcCHHHHHHH
Confidence 78999999999999999999764
No 485
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=30.93 E-value=35 Score=32.54 Aligned_cols=24 Identities=8% Similarity=0.124 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
.++|+.|||+.+|++++||.+++.
T Consensus 37 ~~~~~~eia~~~gl~kstv~r~l~ 60 (260)
T 2o0y_A 37 PTRSLKELVEGTKLPKTTVVRLVA 60 (260)
T ss_dssp SSBCHHHHHHHHCCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHH
Confidence 579999999999999999976554
No 486
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=30.92 E-value=42 Score=28.91 Aligned_cols=23 Identities=9% Similarity=0.065 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQV 475 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi 475 (499)
+++.|..+||+..|||++++-++
T Consensus 32 ~~~~ti~~Ia~~agvs~~t~Y~~ 54 (203)
T 3f1b_A 32 FHETSMDAIAAKAEISKPMLYLY 54 (203)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHH
T ss_pred cccccHHHHHHHhCCchHHHHHH
Confidence 67899999999999999999775
No 487
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=30.86 E-value=15 Score=36.69 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccChhHHHhhhhhhHHHHHHHHHHHHHH
Q 010835 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGSSLRISRPELQSILMECSLAREKLVMSNVRL 267 (499)
Q Consensus 205 ~Lt~eEe~eL~~~ik~Gd~l~~~~~~~~~~~g~~~~~~~~~l~~~l~~~~~A~e~LIe~yl~L 267 (499)
|||.+.|++++++|..|.. ++...+.+++-+.+.|+..|-++
T Consensus 1 LLTREgEI~IAKRIE~G~~---------------------~v~~ai~~~P~~i~~il~~~~~l 42 (339)
T 1sig_A 1 GSHMEGEIDIAKRIEDGIN---------------------QVQCSVAEYPEAITYLLEQYNRV 42 (339)
T ss_dssp ---CCTHHHHHHHHHHHHH---------------------HHHHHHTTCHHHHHHHHHHHTTT
T ss_pred CCChHHHHHHHHHHHHHHH---------------------HHHHHHHhChHHHHHHHHHHHHH
Confidence 6899999999999999976 67888888899999999888654
No 488
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.83 E-value=56 Score=25.65 Aligned_cols=41 Identities=22% Similarity=0.284 Sum_probs=29.9
Q ss_pred HHHHHHHHHhcCCCC--CCCHHHHHHHHCCCHHHHHHHHHHHH
Q 010835 440 REREIIRLYYGLDKE--CLTWEDISKRIGLSRERVRQVGLVAL 480 (499)
Q Consensus 440 rER~VI~LryGLd~e--g~SleEIAe~LgIS~~rVrqi~~rAL 480 (499)
.++.+|.-+|-++-. ...+..||+.+|++...|+.+...-.
T Consensus 15 ~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrR 57 (71)
T 2da7_A 15 DHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRK 57 (71)
T ss_dssp HHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcc
Confidence 346677777744322 24577899999999999999987754
No 489
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=30.80 E-value=40 Score=28.93 Aligned_cols=22 Identities=9% Similarity=0.167 Sum_probs=20.1
Q ss_pred CCCCCHHHHHHHHCCCHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQ 474 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrq 474 (499)
+.+.|.++||+..|||++++-.
T Consensus 28 ~~~~t~~~IA~~agvs~~tlY~ 49 (197)
T 3rd3_A 28 FSGVGLNEILQSAGVPKGSFYH 49 (197)
T ss_dssp STTCCHHHHHHHHTCCHHHHTT
T ss_pred cccCCHHHHHHHhCCChhhHHH
Confidence 6889999999999999999854
No 490
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=30.69 E-value=55 Score=28.14 Aligned_cols=23 Identities=17% Similarity=-0.041 Sum_probs=21.1
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQV 475 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi 475 (499)
+++.|..+||+..|||++++-.+
T Consensus 35 ~~~~s~~~Ia~~agvs~~t~Y~~ 57 (206)
T 3kz9_A 35 IGRGGHADIAEIAQVSVATVFNY 57 (206)
T ss_dssp CSSCCHHHHHHHHTSCHHHHHHH
T ss_pred cccccHHHHHHHhCCCHHHHHHH
Confidence 78899999999999999999765
No 491
>3crj_A Transcription regulator; APC88200, TETR, structura genomics, PSI-2, protein structure initiative; HET: MSE; 2.60A {Haloarcula marismortui atcc 43049}
Probab=30.62 E-value=38 Score=29.83 Aligned_cols=23 Identities=26% Similarity=0.193 Sum_probs=20.6
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQV 475 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi 475 (499)
+++.|.++||+..|||++++-.+
T Consensus 32 ~~~~s~~~IA~~agvsk~tlY~y 54 (199)
T 3crj_A 32 YADLTIQRIADEYGKSTAAVHYY 54 (199)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHTT
T ss_pred cccCCHHHHHHHhCCChhHHhhh
Confidence 78999999999999999998543
No 492
>1dw9_A Cyanate lyase; cyanate degradation, structural genomics, PSI, protei structure initiative, midwest center for structural genomic; HET: SO4; 1.65A {Escherichia coli} SCOP: a.35.1.4 d.72.1.1 PDB: 1dwk_A* 2ivq_A 2ivb_A 2iu7_A 2iv1_A 2iuo_A 2ivg_A
Probab=30.51 E-value=31 Score=31.19 Aligned_cols=32 Identities=25% Similarity=0.281 Sum_probs=25.8
Q ss_pred HHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 443 EIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 443 ~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
.|+..+- ..|+|+++||+.+|+|+..|-.+..
T Consensus 17 ~I~~AK~---~KGLTwe~IAe~iG~S~v~vtaa~l 48 (156)
T 1dw9_A 17 AILLSKA---KKDLSFAEIADGTGLAEAFVTAALL 48 (156)
T ss_dssp HHHHHHH---HTTCCHHHHHTTSSSCHHHHHHHHT
T ss_pred HHHHHHH---HcCCCHHHHHHHhCcCHHHHHHHHc
Confidence 3555665 5789999999999999999877653
No 493
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=30.50 E-value=47 Score=25.99 Aligned_cols=27 Identities=11% Similarity=0.393 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHhhc
Q 010835 356 VTPSVDRIAEYLNMSQKKVRNATEAIG 382 (499)
Q Consensus 356 r~pt~eEIA~~Lgis~e~v~~~l~~~~ 382 (499)
...+..|||+.+|++...|...+..+.
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~ 63 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKAL 63 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 577999999999999999998777653
No 494
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=30.42 E-value=44 Score=29.56 Aligned_cols=24 Identities=21% Similarity=0.162 Sum_probs=21.6
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVG 476 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~ 476 (499)
+++.|..+||+..|||++++-.+.
T Consensus 29 ~~~~s~~~IA~~aGvskgtlY~~F 52 (210)
T 2wui_A 29 VGTTAMADLADAAGVSRGAVYGHY 52 (210)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHC
T ss_pred ccccCHHHHHHHhCCCHHHHHHHc
Confidence 789999999999999999997654
No 495
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=30.41 E-value=14 Score=35.26 Aligned_cols=38 Identities=11% Similarity=0.098 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHhcCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010835 438 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 478 (499)
Q Consensus 438 ~~rER~VI~LryGLd~eg~SleEIAe~LgIS~~rVrqi~~r 478 (499)
++..+.||.+-. ..++|..|||+.+|+|+++|++++..
T Consensus 11 ~~~R~~IL~~L~---~g~~s~~ELa~~lglS~stVs~hL~~ 48 (232)
T 2qlz_A 11 NKVRRDLLSHLT---CMECYFSLLSSKVSVSSTAVAKHLKI 48 (232)
T ss_dssp SHHHHHHHHHHT---TTTTCSSSSCTTCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 566677877655 46799999999999999999876543
No 496
>1fc3_A SPO0A; response regulator, signaling protein; 2.00A {Geobacillus stearothermophilus} SCOP: a.4.6.3 PDB: 1lq1_A
Probab=30.35 E-value=33 Score=29.57 Aligned_cols=30 Identities=23% Similarity=0.256 Sum_probs=25.1
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010835 456 LTWEDISKRIGLSRERVRQVGLVALEKLKH 485 (499)
Q Consensus 456 ~SleEIAe~LgIS~~rVrqi~~rALkKLR~ 485 (499)
.=+.+||+..|.|.++|.+-+..|+...-.
T Consensus 49 ~LYp~IA~k~~TT~s~VEraIR~aIe~aw~ 78 (120)
T 1fc3_A 49 VLYPDIAKKYNTTASRVERAIRHAIEVAWS 78 (120)
T ss_dssp THHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 347899999999999999988888776543
No 497
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=30.26 E-value=39 Score=29.18 Aligned_cols=25 Identities=12% Similarity=0.351 Sum_probs=22.0
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
+++.|.++||+..|||++++-.+..
T Consensus 35 ~~~~ti~~Ia~~agvs~~t~Y~~F~ 59 (208)
T 3cwr_A 35 AAAMTMEGVASEAGIAKKTLYRFAS 59 (208)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHCS
T ss_pred HHhccHHHHHHHhCCCHHHHHHHcC
Confidence 6789999999999999999976643
No 498
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=30.24 E-value=33 Score=29.40 Aligned_cols=23 Identities=17% Similarity=0.352 Sum_probs=20.6
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQV 475 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi 475 (499)
+++.|.++||+..|||++++-.+
T Consensus 28 ~~~~ti~~Ia~~agvs~~t~Y~~ 50 (196)
T 3col_A 28 PAGVSTTKVAKRVGIAQSNVYLY 50 (196)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHTT
T ss_pred cccCCHHHHHHHhCCcHHHHHHH
Confidence 67899999999999999998653
No 499
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=30.14 E-value=37 Score=32.30 Aligned_cols=24 Identities=33% Similarity=0.448 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 010835 454 ECLTWEDISKRIGLSRERVRQVGL 477 (499)
Q Consensus 454 eg~SleEIAe~LgIS~~rVrqi~~ 477 (499)
.++|+.|||+.+|++++||.++++
T Consensus 28 ~~~~~~eia~~~gl~~stv~r~l~ 51 (257)
T 2g7u_A 28 PNPTLAELATEAGLSRPAVRRILL 51 (257)
T ss_dssp SSCBHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 579999999999999999976554
No 500
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=30.11 E-value=51 Score=29.07 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 010835 453 KECLTWEDISKRIGLSRERVRQVG 476 (499)
Q Consensus 453 ~eg~SleEIAe~LgIS~~rVrqi~ 476 (499)
+++.|.++||+..|||++++-.+.
T Consensus 30 ~~~ts~~~IA~~aGvsk~tlY~~F 53 (211)
T 3bhq_A 30 YDGTSMEEIATKAGASKQTVYKHF 53 (211)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHc
Confidence 789999999999999999997643
Done!