BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010836
(499 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224111126|ref|XP_002315757.1| predicted protein [Populus trichocarpa]
gi|222864797|gb|EEF01928.1| predicted protein [Populus trichocarpa]
Length = 571
Score = 761 bits (1966), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/483 (75%), Positives = 412/483 (85%), Gaps = 2/483 (0%)
Query: 1 MALLLLRNRKASALGIPRILRDNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMK--KFD 58
MA LLR+R+ S LG+ IL+D ++P + E +GA A V ++R Y + + + KFD
Sbjct: 1 MAAFLLRHRQVSTLGVSGILKDKLDPSRPHVESRLGALAGVCNLLREYSTSNDNRAHKFD 60
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
F DLT PH WYP+AR+K RK+ LHVGPTNSGKT+ AL +LESS SG+YCGPLRLLAWEVA
Sbjct: 61 FLDLTCPHAWYPVARRKNRKIFLHVGPTNSGKTYHALKQLESSPSGVYCGPLRLLAWEVA 120
Query: 119 KRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSF 178
KRLNKANV CDLITGQEREEV+GAKH+AVTVEMADV S+Y CAV+DEIQMLGC TRGFSF
Sbjct: 121 KRLNKANVPCDLITGQEREEVNGAKHKAVTVEMADVTSNYSCAVVDEIQMLGCMTRGFSF 180
Query: 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQ 238
TRALLGI A+ELHLCGDPAAVPLIQ+IL+ TGDD+ VQ YERLSPLVP PLGSF NIQ
Sbjct: 181 TRALLGISADELHLCGDPAAVPLIQEILKPTGDDIHVQYYERLSPLVPSQKPLGSFKNIQ 240
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
TGDCIVTFSR IY+LK IE KHLCS+VYGSLPPETRTRQAT FNDASSEFDVLVAS
Sbjct: 241 TGDCIVTFSRREIYKLKGQIERGRKHLCSVVYGSLPPETRTRQATMFNDASSEFDVLVAS 300
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358
DAIGMGLNLNISRIIFSTMKKFDGVE+RDLT+ EVKQIAGRAGRYGS FPVGEVTCL ++
Sbjct: 301 DAIGMGLNLNISRIIFSTMKKFDGVEMRDLTISEVKQIAGRAGRYGSDFPVGEVTCLHAD 360
Query: 359 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFA 418
DLPLLH SL PSP+LE AGLFP FDLI+MYSRLHP LY I+EHFLENAKLSENYF A
Sbjct: 361 DLPLLHSSLKSPSPILECAGLFPTFDLIFMYSRLHPKKGLYRIMEHFLENAKLSENYFIA 420
Query: 419 NCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIF 478
NCEE+LKVA V+D LP+ LH+KYLF ISPVDM ++ISSQGLTQFA NY++KGIV+L+EIF
Sbjct: 421 NCEEMLKVAAVVDVLPISLHDKYLFVISPVDMRNEISSQGLTQFAQNYAQKGIVRLKEIF 480
Query: 479 TPG 481
TPG
Sbjct: 481 TPG 483
>gi|356538244|ref|XP_003537614.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Glycine max]
Length = 565
Score = 747 bits (1928), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/492 (72%), Positives = 407/492 (82%), Gaps = 6/492 (1%)
Query: 2 ALLLLRNRKASALGIPRILRDNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTD 61
+ LL RNR R L EPF L + + + Y S +G + DFTD
Sbjct: 3 SFLLRRNRNL----FSRSLLGKKEPFRLYFQFKSQSLGGAANKVHPYSSRNGPIRNDFTD 58
Query: 62 LTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL 121
LT PHTWYP ARKK R++ILHVGPTNSGKTH AL +LESS+SG+YCGPLRLLAWE+AKRL
Sbjct: 59 LTCPHTWYPQARKKHRRIILHVGPTNSGKTHHALKQLESSASGVYCGPLRLLAWEIAKRL 118
Query: 122 NKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRA 181
NKA V CDLITGQER+EVDGA H+AVTVEM DV +DY CAVIDEIQM+GC TRG+SFTRA
Sbjct: 119 NKAQVPCDLITGQERDEVDGANHKAVTVEMVDVSADYQCAVIDEIQMIGCITRGYSFTRA 178
Query: 182 LLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGD 241
LLGI A+ELHLCGDPAAVPLIQ+I+++TGD+++VQ YERLSPLVPL VPLGSFSN++ GD
Sbjct: 179 LLGIAADELHLCGDPAAVPLIQEIMKITGDEIEVQFYERLSPLVPLKVPLGSFSNVRNGD 238
Query: 242 CIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI 301
CIVTFSR IY+LKK IE GKHLCS+VYGSLPPETRTRQA+ FNDASSEFDVLVASDAI
Sbjct: 239 CIVTFSRQEIYKLKKRIEKEGKHLCSVVYGSLPPETRTRQASMFNDASSEFDVLVASDAI 298
Query: 302 GMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLP 361
GMGLNLNISRIIFSTMKKFDG E+RDLTVPE+KQIAGRAGRYGS FPVGEVTC+D EDLP
Sbjct: 299 GMGLNLNISRIIFSTMKKFDGFEVRDLTVPEIKQIAGRAGRYGSNFPVGEVTCMDEEDLP 358
Query: 362 LLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCE 421
LLH SL PSP+LE AG+ P FDL+YMYSRLHP + Y IL HFL+NAKLSENYF NCE
Sbjct: 359 LLHSSLNSPSPILERAGILPTFDLMYMYSRLHPRNGFYQILAHFLDNAKLSENYFIVNCE 418
Query: 422 EVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPG 481
++LKVA VID+LPL LHEKYLFCISP DM+D+ISSQGL QFA NY+KKG+V+LREIFTP
Sbjct: 419 QLLKVAAVIDELPLGLHEKYLFCISPADMDDEISSQGLAQFAENYAKKGLVRLREIFTP- 477
Query: 482 LGSLRVAEFPVG 493
GSL+V + P
Sbjct: 478 -GSLKVPKTPAA 488
>gi|356495782|ref|XP_003516752.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Glycine max]
Length = 600
Score = 724 bits (1868), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/471 (75%), Positives = 401/471 (85%), Gaps = 2/471 (0%)
Query: 23 NVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILH 82
N EPF + + + Y S +G + DFTDLT PHTWYP AR+K R+VILH
Sbjct: 55 NKEPFRPYFQLKFLSLGGAANKVHPYSSSNGPIRNDFTDLTCPHTWYPQARRKHRRVILH 114
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGA 142
VGPTNSGKTH AL +LESS+SG+YCGPLRLLAWE+AKRLNKA V CDLITGQEREEVDGA
Sbjct: 115 VGPTNSGKTHHALKQLESSASGVYCGPLRLLAWEIAKRLNKAQVPCDLITGQEREEVDGA 174
Query: 143 KHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLI 202
H+AVTVEMAD+ +DY CAVIDEIQM+GC TRG+SFTRALLGI A+ELHLCGDPAAVPLI
Sbjct: 175 NHKAVTVEMADLSADYQCAVIDEIQMIGCTTRGYSFTRALLGIAADELHLCGDPAAVPLI 234
Query: 203 QQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRG 262
Q+IL++TGD+++VQ YERLSPLVPLNVPLGSFSN++ GDCIVTFSR IY+LKK IE G
Sbjct: 235 QEILKITGDEIEVQFYERLSPLVPLNVPLGSFSNVRNGDCIVTFSRQEIYKLKKRIEKEG 294
Query: 263 KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDG 322
KHLCS+VYGSLPPETRTRQA+ FNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDG
Sbjct: 295 KHLCSVVYGSLPPETRTRQASMFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDG 354
Query: 323 VELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN 382
E+RDL+VPE+KQIAGRAGRYGS FPVGEVTC+D EDL LLH SL PSP+LE AGL P
Sbjct: 355 FEVRDLSVPEIKQIAGRAGRYGSNFPVGEVTCMDEEDLLLLHSSLNSPSPILERAGLLPT 414
Query: 383 FDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYL 442
FDL+YMYSRLHP + Y IL HFL++AKLSENYF NCE++LKVA VID+LPL LHEKYL
Sbjct: 415 FDLMYMYSRLHPRNGFYQILAHFLDHAKLSENYFIVNCEQLLKVAAVIDELPLGLHEKYL 474
Query: 443 FCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGLGSLRVAEFPVG 493
FCISP DM+D+ISSQGLTQFA NY+KKG+V+LREIFTP GSL+V + P
Sbjct: 475 FCISPADMDDEISSQGLTQFAENYAKKGLVRLREIFTP--GSLKVPKTPAA 523
>gi|357480943|ref|XP_003610757.1| ATP-dependent RNA helicase SUPV3L1 [Medicago truncatula]
gi|355512092|gb|AES93715.1| ATP-dependent RNA helicase SUPV3L1 [Medicago truncatula]
Length = 570
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/491 (70%), Positives = 406/491 (82%), Gaps = 3/491 (0%)
Query: 2 ALLLLRNRKASALGIPRILRDNVEP-FSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFT 60
+ LL RN A + ++ P F E + A S+ RSY S SG + + T
Sbjct: 3 SFLLRRNSNLLARSLTGNYKEQFCPYFQAKFECLGAALNSLHPYSRSYGSASGSIRNEIT 62
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D+T PHTWYPLAR+K R+V LHVGPTNSGKT+QAL +L+SS+SGIYCGPLRLLAWEVAKR
Sbjct: 63 DMTCPHTWYPLARRKRRRVFLHVGPTNSGKTYQALKQLQSSASGIYCGPLRLLAWEVAKR 122
Query: 121 LNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTR 180
LNKANV CDLITGQER+EV+GA H+AVTVEMADV +DY CAVIDEIQMLGC TRG+SFTR
Sbjct: 123 LNKANVPCDLITGQERDEVEGAHHKAVTVEMADVSTDYKCAVIDEIQMLGCNTRGYSFTR 182
Query: 181 ALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTG 240
ALLGI A+ELHLCGDPAAVPLIQ+IL +TGD+++VQ YERLSPLVP+ VPL S S+++ G
Sbjct: 183 ALLGIAADELHLCGDPAAVPLIQEILDITGDELEVQYYERLSPLVPMKVPLRSLSDVRNG 242
Query: 241 DCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 300
DCIVTFSR IY+LKK IE GKHLCS+VYGSLPPETRTRQA+ FNDASSEFDVLVASDA
Sbjct: 243 DCIVTFSRRDIYKLKKRIEREGKHLCSVVYGSLPPETRTRQASMFNDASSEFDVLVASDA 302
Query: 301 IGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL 360
IGMGLNLNISRIIFSTM+KFDG ++RDLTVPE+KQIAGRAGRYGS FP+GEVTC+ +DL
Sbjct: 303 IGMGLNLNISRIIFSTMQKFDGFQMRDLTVPEIKQIAGRAGRYGSNFPLGEVTCMSGDDL 362
Query: 361 PLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANC 420
PLLH +L PSP+LE AGL P+++L+YMYSRLHP + Y +LEHF++NAKLSE YF NC
Sbjct: 363 PLLHSALDSPSPILERAGLLPSYELLYMYSRLHPQAGFYQVLEHFVDNAKLSEKYFIVNC 422
Query: 421 EEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTP 480
++VLKVA V+D+ PL L +KYLFCISP DM+D+ISSQGLTQF NY+KKG+V+LREIFTP
Sbjct: 423 DQVLKVAAVVDEFPLELRDKYLFCISPADMDDEISSQGLTQFVENYAKKGLVRLREIFTP 482
Query: 481 GLGSLRVAEFP 491
G+L+V P
Sbjct: 483 --GTLKVPTTP 491
>gi|255552101|ref|XP_002517095.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
gi|223543730|gb|EEF45258.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
Length = 547
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/480 (75%), Positives = 396/480 (82%), Gaps = 25/480 (5%)
Query: 3 LLLLRNRKASALGIPRILR-DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTD 61
LL LR RK S+LGI R+L +N EPF L++E GA SV + R Y S +G K DFTD
Sbjct: 5 LLRLRQRKVSSLGISRLLNAENGEPFQLHAEFKFGALFSVHTLTRLYRSDNGKPKIDFTD 64
Query: 62 LTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL 121
LT PH+WYP ARKK RKV LHVGPTNSGKTH AL RL SS SGIYCGPLRLLAWEVA +L
Sbjct: 65 LTCPHSWYPSARKKHRKVTLHVGPTNSGKTHHALKRLASSPSGIYCGPLRLLAWEVANKL 124
Query: 122 NKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRA 181
NK V CDLITGQEREEVDGAKH+AVTVEMADV SDY CAV+DEIQM+GCKTRGFSFTRA
Sbjct: 125 NKGQVPCDLITGQEREEVDGAKHKAVTVEMADVTSDYSCAVVDEIQMVGCKTRGFSFTRA 184
Query: 182 LLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGD 241
LLGI A+ELHLCGDPAAVPLIQ+IL+VTGDD+K TGD
Sbjct: 185 LLGISADELHLCGDPAAVPLIQEILKVTGDDIK------------------------TGD 220
Query: 242 CIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI 301
CIVTFSR IYRLKK IES GKHLCS+VYGSLPPETRTRQAT FNDASSEFDVLVASDAI
Sbjct: 221 CIVTFSRREIYRLKKIIESAGKHLCSVVYGSLPPETRTRQATMFNDASSEFDVLVASDAI 280
Query: 302 GMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLP 361
GMGLNLNISRIIFSTMKKFDGVE+R LTVPE+KQIAGRAGRYGS +P GEVTCLD++DL
Sbjct: 281 GMGLNLNISRIIFSTMKKFDGVEMRYLTVPEIKQIAGRAGRYGSNYPAGEVTCLDADDLS 340
Query: 362 LLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCE 421
LLH SL PSP LESAGLFP FDL++MYSRLHP LY ILEHF+ENAKLS NYF A+CE
Sbjct: 341 LLHSSLESPSPALESAGLFPTFDLMFMYSRLHPKKGLYQILEHFVENAKLSPNYFIADCE 400
Query: 422 EVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPG 481
EVLKVA VID++PL L++KYLFCISPVDMND+ISSQGLTQFA NY+KKGIV+L+EIFTPG
Sbjct: 401 EVLKVAAVIDEMPLSLNDKYLFCISPVDMNDEISSQGLTQFAENYAKKGIVRLKEIFTPG 460
>gi|225432734|ref|XP_002279035.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Vitis vinifera]
Length = 572
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/459 (76%), Positives = 395/459 (86%)
Query: 23 NVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILH 82
+EPF + E V IR + S S K DF DLT PHTWYP AR+K RKVI+H
Sbjct: 27 TMEPFHRHLELRFRILVGVCNRIRQFSSSSSTSKLDFMDLTHPHTWYPNARRKSRKVIMH 86
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGA 142
VGPTNSGKTH AL RLESSSSGIYCGPLRLLAWEVAKRLNKANV CD+ITGQEREE+DGA
Sbjct: 87 VGPTNSGKTHHALKRLESSSSGIYCGPLRLLAWEVAKRLNKANVPCDMITGQEREEIDGA 146
Query: 143 KHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLI 202
KH+A+TVEMADV SDY CAVIDEIQMLGC+TRGFSFTRALLGI +ELHLCGD ++VPLI
Sbjct: 147 KHKAMTVEMADVTSDYHCAVIDEIQMLGCRTRGFSFTRALLGISTDELHLCGDVSSVPLI 206
Query: 203 QQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRG 262
Q IL+VTGDD +VQ YERLSPLVPLNVPL SFS+IQTGDCIVTFSR IY+LK+ IE+ G
Sbjct: 207 QGILKVTGDDFEVQYYERLSPLVPLNVPLRSFSDIQTGDCIVTFSRRQIYKLKRQIENGG 266
Query: 263 KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDG 322
KHLCS+VYGSLPPETRTRQAT FNDA+SEFDVLVASDAIGMGLNLNISRIIFST+KKFDG
Sbjct: 267 KHLCSVVYGSLPPETRTRQATMFNDATSEFDVLVASDAIGMGLNLNISRIIFSTLKKFDG 326
Query: 323 VELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN 382
+E RDLTVPE+KQIAGRAGR+GSKFP GEVTC++ +DLPLLH SL SP+LE AGLFP
Sbjct: 327 IEERDLTVPEIKQIAGRAGRFGSKFPDGEVTCMNVKDLPLLHSSLKSLSPVLERAGLFPT 386
Query: 383 FDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYL 442
FDL++M+SR HP SLY +LEHF++NAKLS NYF A+CEE+LKVA ++D+LPL LH+KYL
Sbjct: 387 FDLLFMHSRFHPTKSLYQMLEHFVDNAKLSSNYFIADCEEMLKVAAIVDELPLGLHDKYL 446
Query: 443 FCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPG 481
F ISPVDMN+DISSQGL QFA Y+KKGIV+LREIFTPG
Sbjct: 447 FVISPVDMNNDISSQGLIQFAQTYAKKGIVRLREIFTPG 485
>gi|449432684|ref|XP_004134129.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Cucumis sativus]
gi|449504169|ref|XP_004162271.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Cucumis sativus]
Length = 560
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/437 (75%), Positives = 378/437 (86%), Gaps = 2/437 (0%)
Query: 57 FDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWE 116
FDFTDLT PH+WYP ARKK RK+ LH+GPTNSGKTH AL RLESS SG+YCGPLRLLAWE
Sbjct: 46 FDFTDLTCPHSWYPNARKKHRKIFLHMGPTNSGKTHNALKRLESSDSGVYCGPLRLLAWE 105
Query: 117 VAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGF 176
VAKRLN A + CDLITGQEREEVDGAKH+AVTVEMADV S Y CAVIDEIQMLGCKTRG+
Sbjct: 106 VAKRLNNAKIPCDLITGQEREEVDGAKHKAVTVEMADVTSSYSCAVIDEIQMLGCKTRGY 165
Query: 177 SFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSN 236
SFTRALLG+CA+E+HLCGD A VPLIQ+IL+VTGDD++VQ YERLSPL+PLN+PLGS+SN
Sbjct: 166 SFTRALLGLCADEIHLCGDAAVVPLIQEILKVTGDDIEVQYYERLSPLIPLNIPLGSYSN 225
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296
I+ GDCIVTFSR IY KK IE +G HLCSIVYGSLPPETRTRQA FND +SEFDVLV
Sbjct: 226 IRKGDCIVTFSRRRIYGYKKEIERQGGHLCSIVYGSLPPETRTRQAMMFNDTTSEFDVLV 285
Query: 297 ASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 356
ASDAIGMGLNLNISRIIFSTM+KFDG E+R+LTVPE+KQIAGRAGRYGSKFP+GEVTC+
Sbjct: 286 ASDAIGMGLNLNISRIIFSTMEKFDGFEMRELTVPEIKQIAGRAGRYGSKFPIGEVTCIS 345
Query: 357 SEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYF 416
+DLPLLH SL SP +E AGLFP F+L+Y+YSRLHP+ L ILEHF+ENAKLSENYF
Sbjct: 346 GDDLPLLHSSLKSASPTIERAGLFPTFELMYLYSRLHPEHGLRQILEHFVENAKLSENYF 405
Query: 417 FANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLRE 476
+CE +LKVA V+D++PL LH+KYLFCISP DM+D+I+SQGLTQF Y+ KGIV+LRE
Sbjct: 406 IVDCEVMLKVAAVLDEMPLSLHDKYLFCISPADMDDEITSQGLTQFVQGYANKGIVRLRE 465
Query: 477 IFTPGLGSLRVAEFPVG 493
IF G+L+V E P
Sbjct: 466 IFKE--GTLKVPETPAA 480
>gi|30682998|ref|NP_193215.2| ATP-dependent RNA helicase, mitochondrial (SUV3) [Arabidopsis
thaliana]
gi|5823579|emb|CAB53782.1| mitochondrial RNA helicase [Arabidopsis thaliana]
gi|22655093|gb|AAM98137.1| RNA helicase like protein [Arabidopsis thaliana]
gi|31711986|gb|AAP68349.1| At4g14790 [Arabidopsis thaliana]
gi|332658099|gb|AEE83499.1| ATP-dependent RNA helicase, mitochondrial (SUV3) [Arabidopsis
thaliana]
Length = 571
Score = 702 bits (1812), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 340/492 (69%), Positives = 395/492 (80%), Gaps = 12/492 (2%)
Query: 1 MALLLLRNRKASALGIPRILR-DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSG------ 53
MA ++R RK SALGI R+L+ D + + E G + V+ R+Y SG
Sbjct: 1 MAYSVVRLRKVSALGISRVLQADKGSLWRFHFEPEFGDLLRLGVLTRNYRKNSGSPKFDF 60
Query: 54 -----MKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCG 108
KFDFTDLT PHTWYP+ARKK RKVILHVGPTNSGKT+ AL LE SSSG+YCG
Sbjct: 61 TGTGTTSKFDFTDLTCPHTWYPIARKKKRKVILHVGPTNSGKTYSALKHLEQSSSGVYCG 120
Query: 109 PLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQM 168
PLRLLAWEVAKRLNKANV CDLITGQE++ V+GA H+AVTVEMADV S YDCA+IDEIQM
Sbjct: 121 PLRLLAWEVAKRLNKANVPCDLITGQEKDLVEGATHKAVTVEMADVTSVYDCAIIDEIQM 180
Query: 169 LGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLN 228
+GCK RGF+FTRALLGI A+ELHLCGDPA VPL++ IL+VTGDDV+V +YERLSPLVPL
Sbjct: 181 VGCKQRGFAFTRALLGIAADELHLCGDPAVVPLVEDILKVTGDDVEVHTYERLSPLVPLK 240
Query: 229 VPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDA 288
VP+ S S+I+TGDC+VTFSR IY KK IE GKHLCS+VYGSLPPETRT QATRFND
Sbjct: 241 VPVSSVSSIKTGDCLVTFSRKDIYAYKKTIERAGKHLCSVVYGSLPPETRTAQATRFNDE 300
Query: 289 SSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFP 348
+++FDVLVASDAIGMGLNLNISRIIFST++K+DG E RDLTV E+KQIAGRAGR+ SKFP
Sbjct: 301 TNDFDVLVASDAIGMGLNLNISRIIFSTLQKYDGSETRDLTVSEIKQIAGRAGRFQSKFP 360
Query: 349 VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLEN 408
+GEVTCL EDLPLLH SL PSP+LE AGLFP FDL+ YS+ HP LY ILEHF+EN
Sbjct: 361 IGEVTCLHKEDLPLLHSSLKSPSPILERAGLFPTFDLLSGYSQAHPTHGLYQILEHFVEN 420
Query: 409 AKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
AKLS NYF +N E+++KVA ++D+LPL L EKYLF +SPVD+ND+IS QGL QFA N+SK
Sbjct: 421 AKLSSNYFISNVEDMMKVAAIVDELPLGLQEKYLFVVSPVDVNDEISGQGLAQFAQNFSK 480
Query: 469 KGIVQLREIFTP 480
GIV+LREI P
Sbjct: 481 AGIVRLREILAP 492
>gi|110739278|dbj|BAF01552.1| RNA helicase like protein [Arabidopsis thaliana]
Length = 571
Score = 701 bits (1808), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/492 (68%), Positives = 394/492 (80%), Gaps = 12/492 (2%)
Query: 1 MALLLLRNRKASALGIPRILR-DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSG------ 53
MA ++R RK SALGI R+L+ D + + E G + V+ R+Y SG
Sbjct: 1 MAYSVVRLRKVSALGISRVLQADKGSLWRFHFEPEFGDLLRLGVLTRNYRKNSGSPKFDF 60
Query: 54 -----MKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCG 108
KFDFTDLT PHTWYP+ARKK RKVILHVGPTNSGKT+ AL LE SSSG+YCG
Sbjct: 61 TGTGTTSKFDFTDLTCPHTWYPIARKKKRKVILHVGPTNSGKTYSALKHLEQSSSGVYCG 120
Query: 109 PLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQM 168
PLRLLAWEVAKRLNKANV CDLITGQE++ V+GA H+AVTVEMADV S YDCA+IDEIQM
Sbjct: 121 PLRLLAWEVAKRLNKANVPCDLITGQEKDLVEGATHKAVTVEMADVTSVYDCAIIDEIQM 180
Query: 169 LGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLN 228
+GCK RGF+FTRALLGI A+ELHLCGDPA VPL++ IL+VTGDDV+V +YERLSPLVPL
Sbjct: 181 VGCKQRGFAFTRALLGIAADELHLCGDPAVVPLVEDILKVTGDDVEVHTYERLSPLVPLK 240
Query: 229 VPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDA 288
VP+ S S+I+TGDC+VTFSR IY KK IE GKHLCS+VYGSLPPETRT QATRFND
Sbjct: 241 VPVSSVSSIKTGDCLVTFSRKDIYAYKKTIERAGKHLCSVVYGSLPPETRTAQATRFNDE 300
Query: 289 SSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFP 348
+++FDVLVASDAIGMGLNLNISRIIFST++K+DG E RDLTV E+KQIAGRAGR+ SKFP
Sbjct: 301 TNDFDVLVASDAIGMGLNLNISRIIFSTLQKYDGSETRDLTVSEIKQIAGRAGRFQSKFP 360
Query: 349 VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLEN 408
+GEVTCL EDLPLLH SL PSP+LE AGLFP FDL+ YS+ HP LY ILEHF+EN
Sbjct: 361 IGEVTCLHKEDLPLLHSSLKSPSPILERAGLFPTFDLLSGYSQAHPTHGLYQILEHFVEN 420
Query: 409 AKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
AKLS NYF +N E+++KVA ++D+LPL EKYLF +SPVD+ND+IS QGL QFA N+SK
Sbjct: 421 AKLSSNYFISNVEDMMKVAAIVDELPLGWQEKYLFVVSPVDVNDEISGQGLAQFAQNFSK 480
Query: 469 KGIVQLREIFTP 480
GIV+LREI P
Sbjct: 481 AGIVRLREILAP 492
>gi|297800732|ref|XP_002868250.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297314086|gb|EFH44509.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 569
Score = 696 bits (1795), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 338/490 (68%), Positives = 392/490 (80%), Gaps = 12/490 (2%)
Query: 1 MALLLLRNRKASALGIPRILR-DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSG------ 53
MA +LR RK SALGI R+L+ D + E G F + V+ R+Y SG
Sbjct: 1 MAYSVLRLRKVSALGISRVLQADQGSLWRFYFEPEFGEFLRLGVLTRNYRKNSGSPKFDF 60
Query: 54 -----MKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCG 108
KFDFTDLT PHTWYP+ARKK RKVILHVGPTNSGKT+ AL LE SSSG+YCG
Sbjct: 61 TGTGTTSKFDFTDLTCPHTWYPIARKKKRKVILHVGPTNSGKTYSALKHLEQSSSGVYCG 120
Query: 109 PLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQM 168
PLRLLAWEVAKRLNKANV CDLITGQE++ V+GA H+AVTVEMADV S YDCA+IDEIQM
Sbjct: 121 PLRLLAWEVAKRLNKANVPCDLITGQEKDLVEGATHKAVTVEMADVTSVYDCAIIDEIQM 180
Query: 169 LGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLN 228
+GC RGF+FTRALLGI A+ELHLCGDPA VPL++ IL+VTGDDV+V++YERLSPLVPL
Sbjct: 181 VGCTQRGFAFTRALLGIAADELHLCGDPAVVPLVEDILKVTGDDVEVRTYERLSPLVPLK 240
Query: 229 VPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDA 288
V + S S+I+TGDC+VTFSR IY KK IE G HLCS+VYGSLPPETRT QATRFND
Sbjct: 241 VHVSSVSSIKTGDCLVTFSRKDIYAYKKIIERAGNHLCSVVYGSLPPETRTAQATRFNDE 300
Query: 289 SSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFP 348
+++FDVLVASDAIGMGLNLNISRIIFST++KFDG E RDLTV E+KQIAGRAGR+ SKFP
Sbjct: 301 TNDFDVLVASDAIGMGLNLNISRIIFSTLQKFDGSETRDLTVSEIKQIAGRAGRFRSKFP 360
Query: 349 VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLEN 408
+GEVTCL EDLPLLH SL PSP+LE AGLFP FDL+ YS+ HP LY ILEHF+EN
Sbjct: 361 IGEVTCLHKEDLPLLHSSLKSPSPLLERAGLFPTFDLLSRYSQAHPKHGLYQILEHFVEN 420
Query: 409 AKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
AKLS NYF +N E+++KVA ++D+LPL L EKYLF +SPVD+ND+IS QGL QFA N+SK
Sbjct: 421 AKLSSNYFISNVEDMMKVAAIVDELPLGLQEKYLFVVSPVDINDEISGQGLAQFAHNFSK 480
Query: 469 KGIVQLREIF 478
G+V+LREI
Sbjct: 481 AGVVRLREIL 490
>gi|297737084|emb|CBI26285.3| unnamed protein product [Vitis vinifera]
Length = 612
Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/522 (68%), Positives = 402/522 (77%), Gaps = 45/522 (8%)
Query: 4 LLLRNRKASALGIPRILRDNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLT 63
LLR R S GI +EPF + E V IR + S S K DF DLT
Sbjct: 5 FLLR-RHLSFSGISPTFHGTMEPFHRHLELRFRILVGVCNRIRQFSSSSSTSKLDFMDLT 63
Query: 64 RPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK 123
PHTWYP AR+K RKVI+HVGPTNSGKTH AL RLESSSSGIYCGPLRLLAWEVAKRLNK
Sbjct: 64 HPHTWYPNARRKSRKVIMHVGPTNSGKTHHALKRLESSSSGIYCGPLRLLAWEVAKRLNK 123
Query: 124 ANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQ---------------- 167
ANV CD+ITGQEREE+DGAKH+A+TVEMADV SDY CAVIDEIQ
Sbjct: 124 ANVPCDMITGQEREEIDGAKHKAMTVEMADVTSDYHCAVIDEIQAFRESNYWYSLLIFPV 183
Query: 168 ----------------------------MLGCKTRGFSFTRALLGICANELHLCGDPAAV 199
MLGC+TRGFSFTRALLGI +ELHLCGD ++V
Sbjct: 184 VAPSGVSHVHHVYNLLGLWFLLINYKKAMLGCRTRGFSFTRALLGISTDELHLCGDVSSV 243
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
PLIQ IL+VTGDD +VQ YERLSPLVPLNVPL SFS+IQTGDCIVTFSR IY+LK+ IE
Sbjct: 244 PLIQGILKVTGDDFEVQYYERLSPLVPLNVPLRSFSDIQTGDCIVTFSRRQIYKLKRQIE 303
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
+ GKHLCS+VYGSLPPETRTRQAT FNDA+SEFDVLVASDAIGMGLNLNISRIIFST+KK
Sbjct: 304 NGGKHLCSVVYGSLPPETRTRQATMFNDATSEFDVLVASDAIGMGLNLNISRIIFSTLKK 363
Query: 320 FDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGL 379
FDG+E RDLTVPE+KQIAGRAGR+GSKFP GEVTC++ +DLPLLH SL SP+LE AGL
Sbjct: 364 FDGIEERDLTVPEIKQIAGRAGRFGSKFPDGEVTCMNVKDLPLLHSSLKSLSPVLERAGL 423
Query: 380 FPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHE 439
FP FDL++M+SR HP SLY +LEHF++NAKLS NYF A+CEE+LKVA ++D+LPL LH+
Sbjct: 424 FPTFDLLFMHSRFHPTKSLYQMLEHFVDNAKLSSNYFIADCEEMLKVAAIVDELPLGLHD 483
Query: 440 KYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPG 481
KYLF ISPVDMN+DISSQGL QFA Y+KKGIV+LREIFTPG
Sbjct: 484 KYLFVISPVDMNNDISSQGLIQFAQTYAKKGIVRLREIFTPG 525
>gi|357115310|ref|XP_003559433.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Brachypodium distachyon]
Length = 572
Score = 676 bits (1744), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 319/432 (73%), Positives = 375/432 (86%), Gaps = 2/432 (0%)
Query: 56 KFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAW 115
KFDFTD+T PH WYP AR+K RKV LHVGPTNSGKTH AL RLE+SSSG+YCGPLRLLA
Sbjct: 50 KFDFTDMTDPHMWYPNAREKKRKVFLHVGPTNSGKTHNALKRLEASSSGVYCGPLRLLAR 109
Query: 116 EVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
EVAKRLN A+V C+LITGQEREE++GAKH +VTVE+ADV ++Y CAVIDEIQM+GCKTRG
Sbjct: 110 EVAKRLNNADVPCNLITGQEREEIEGAKHSSVTVEIADVTTEYQCAVIDEIQMIGCKTRG 169
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
FSFTRALLG+C++ELH+CGDPAAVP+IQ++L+ TGD V VQ YERLSPLVPL LGSFS
Sbjct: 170 FSFTRALLGLCSDELHVCGDPAAVPIIQRMLEPTGDVVTVQYYERLSPLVPLKSTLGSFS 229
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
NI+ GDC+VTFSR IY+LKK IE GKHLCS+VYGSLPPETRT+QAT FND +SE +VL
Sbjct: 230 NIKEGDCMVTFSRREIYKLKKKIEMEGKHLCSVVYGSLPPETRTKQATMFNDEASELNVL 289
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 355
VASDAIGMGLNLNISRIIFST++KFDGV +R+LTVPE+KQIAGRAGRYGSKFPVGEVTCL
Sbjct: 290 VASDAIGMGLNLNISRIIFSTLEKFDGVRMRELTVPEIKQIAGRAGRYGSKFPVGEVTCL 349
Query: 356 DSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENY 415
+EDLPLLH SL PSP++E AGLFP FDL+ +YSRLH + ILE FLE AKLS +Y
Sbjct: 350 HAEDLPLLHSSLKLPSPIIERAGLFPTFDLLSVYSRLHGTDFFHPILERFLEKAKLSPDY 409
Query: 416 FFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLR 475
F A+CE++LKVA ++D+LPL L++KY+FC+SPVD+ DDIS+QGL QFA NY+KKG V+L+
Sbjct: 410 FIADCEDMLKVAAIVDELPLGLYDKYIFCLSPVDVRDDISTQGLIQFAGNYAKKGTVRLK 469
Query: 476 EIFTPGLGSLRV 487
E FT G+LRV
Sbjct: 470 ERFTS--GTLRV 479
>gi|242032983|ref|XP_002463886.1| hypothetical protein SORBIDRAFT_01g008310 [Sorghum bicolor]
gi|241917740|gb|EER90884.1| hypothetical protein SORBIDRAFT_01g008310 [Sorghum bicolor]
Length = 542
Score = 671 bits (1731), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 316/437 (72%), Positives = 369/437 (84%)
Query: 45 IRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSG 104
+R + + KFD TDLT PH WYP AR+K R V LHVGPTNSGKT+ AL RLE+SSSG
Sbjct: 7 LRFWRTYHNSAKFDLTDLTHPHIWYPKAREKKRNVFLHVGPTNSGKTYSALKRLEASSSG 66
Query: 105 IYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVID 164
+YCGPLRLLA E+A+RLNK NV C+LITGQER+E++GAKH +VTVEMADV +DY CAVID
Sbjct: 67 VYCGPLRLLAREIAQRLNKVNVPCNLITGQERDEIEGAKHSSVTVEMADVTTDYQCAVID 126
Query: 165 EIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL 224
EIQM+GCK+RG+SFTRALLG+C++ELH+CGDPAAVPLIQ+IL+ TGD V VQ YERLSPL
Sbjct: 127 EIQMVGCKSRGYSFTRALLGLCSDELHVCGDPAAVPLIQRILEATGDVVTVQYYERLSPL 186
Query: 225 VPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATR 284
VPL PLGSFSNI+ GDC+VTFSR IY LKK IE GKHLCS+VYGSLPPETRT+QAT
Sbjct: 187 VPLKSPLGSFSNIKAGDCLVTFSRRGIYTLKKRIEREGKHLCSVVYGSLPPETRTKQATM 246
Query: 285 FNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
FND +S+ DVLVASDAIGMGLNLNISRIIFSTM KFDG R+LTV E+KQIAGRAGRYG
Sbjct: 247 FNDDTSDLDVLVASDAIGMGLNLNISRIIFSTMMKFDGFCNRELTVAEIKQIAGRAGRYG 306
Query: 345 SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEH 404
SKFPVGEVTC+D+EDLPLLH SL SP++E AGLFP FDL+ +YSRLH + +LE
Sbjct: 307 SKFPVGEVTCVDAEDLPLLHSSLKSASPIIERAGLFPTFDLLSLYSRLHGTDFFHPVLER 366
Query: 405 FLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFAT 464
FLE AKLS +YF A+CE++LKVA ++D PL L++KYLFCISPVD+ DDIS QGL QFA
Sbjct: 367 FLEKAKLSPDYFIADCEDMLKVAAIVDDFPLGLYDKYLFCISPVDIRDDISVQGLVQFAE 426
Query: 465 NYSKKGIVQLREIFTPG 481
NY++KGIV+L+EIFTPG
Sbjct: 427 NYARKGIVRLKEIFTPG 443
>gi|414872750|tpg|DAA51307.1| TPA: hypothetical protein ZEAMMB73_054551 [Zea mays]
Length = 577
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/426 (72%), Positives = 365/426 (85%)
Query: 56 KFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAW 115
KFD TDLT PH WYP AR+K R V LHVGPTNSGKT+ AL RLE+SSSG+YCGPLRLLA
Sbjct: 55 KFDLTDLTHPHMWYPKAREKKRNVFLHVGPTNSGKTYSALKRLEASSSGVYCGPLRLLAR 114
Query: 116 EVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
EVA+RLNK NV C+LITGQER E++GAKH +VTVEMAD+ ++Y CAVIDEIQM+GCK+RG
Sbjct: 115 EVAQRLNKVNVPCNLITGQERNEIEGAKHSSVTVEMADMTTNYQCAVIDEIQMVGCKSRG 174
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+SFTRALLG+C++ELH+CGDPAAVPLIQ+IL+ TGD V VQ YERLSPLVPL PLGSFS
Sbjct: 175 YSFTRALLGLCSDELHVCGDPAAVPLIQRILEATGDVVTVQYYERLSPLVPLKSPLGSFS 234
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
NI+ GDC+V+FSR IY+LKK IE GKHLCS+VYGSLPPETRT+QAT FND +S+ +VL
Sbjct: 235 NIKAGDCLVSFSRRGIYKLKKRIEREGKHLCSVVYGSLPPETRTKQATMFNDDTSDLNVL 294
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 355
VASDAIGMGLNLNISRIIFSTM KFDG R+LTV E+KQIAGRAGRYGSKFPVGEVTCL
Sbjct: 295 VASDAIGMGLNLNISRIIFSTMMKFDGFCNRELTVAEIKQIAGRAGRYGSKFPVGEVTCL 354
Query: 356 DSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENY 415
+ +DLPLLH SL S ++E AGLFP FDL+ +YSRLH + ILE FLE AKLS +Y
Sbjct: 355 NPQDLPLLHSSLKSASSIIERAGLFPTFDLLSLYSRLHGTDFFHPILERFLEKAKLSPDY 414
Query: 416 FFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLR 475
F +CE++LKVA ++D LPL L++KYLFC+SPVD++DDIS+QGL QFA NY++KGIV+L+
Sbjct: 415 FITDCEDMLKVAAIVDDLPLGLYDKYLFCMSPVDVSDDISAQGLVQFAENYARKGIVRLK 474
Query: 476 EIFTPG 481
EIFTPG
Sbjct: 475 EIFTPG 480
>gi|115455299|ref|NP_001051250.1| Os03g0746500 [Oryza sativa Japonica Group]
gi|108711051|gb|ABF98846.1| Helicase conserved C-terminal domain containing protein, expressed
[Oryza sativa Japonica Group]
gi|113549721|dbj|BAF13164.1| Os03g0746500 [Oryza sativa Japonica Group]
gi|260800457|gb|ACX50964.1| ATP-dependent RNA helicase [Oryza sativa Japonica Group]
Length = 579
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 310/426 (72%), Positives = 367/426 (86%)
Query: 56 KFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAW 115
KFD TDLT PH WYP AR+K R V LHVGPTNSGKTH AL RLE+SSSG+YCGPLRLLA
Sbjct: 57 KFDLTDLTHPHIWYPNAREKKRNVFLHVGPTNSGKTHNALKRLEASSSGVYCGPLRLLAR 116
Query: 116 EVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
EVA+RLNKANV C+LITGQEREE++GAKH +VTVEMAD+ ++Y CAVIDEIQM+GC++RG
Sbjct: 117 EVAQRLNKANVPCNLITGQEREEIEGAKHSSVTVEMADMTTEYQCAVIDEIQMVGCRSRG 176
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
FSFTRALLG+C++ELH+CGDPA VPLIQ+IL+ TGD V VQ YERLSPLVPL LGSFS
Sbjct: 177 FSFTRALLGLCSDELHVCGDPAVVPLIQRILEPTGDVVTVQYYERLSPLVPLKTTLGSFS 236
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
NI+ GDC+VTFSR +IY LK+ IE GKHLCS+VYGSLPPETRT+QAT FND S +VL
Sbjct: 237 NIKAGDCVVTFSRRSIYMLKRRIEMGGKHLCSVVYGSLPPETRTKQATMFNDQDSNLNVL 296
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 355
VASDAIGMGLNLNISRIIFST++KFDG+ R+LTV E+KQIAGRAGRYGSKFPVGEVTCL
Sbjct: 297 VASDAIGMGLNLNISRIIFSTLEKFDGICNRELTVAEIKQIAGRAGRYGSKFPVGEVTCL 356
Query: 356 DSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENY 415
+S+ LPLLH +L PSP++E AGLFP FD++ +YSRLH ILE FL+ AKLS +Y
Sbjct: 357 NSDHLPLLHSALKSPSPIIERAGLFPTFDVLSLYSRLHGTDFFQPILERFLDKAKLSPDY 416
Query: 416 FFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLR 475
F A+CE++LKVA ++D+LPL L++KYLFC+SPVD+ DDIS++GL QFA NY+KKGIV+L+
Sbjct: 417 FIADCEDMLKVAAIVDELPLGLYDKYLFCLSPVDIRDDISTKGLIQFAENYAKKGIVRLK 476
Query: 476 EIFTPG 481
EIFTPG
Sbjct: 477 EIFTPG 482
>gi|222625790|gb|EEE59922.1| hypothetical protein OsJ_12550 [Oryza sativa Japonica Group]
Length = 628
Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust.
Identities = 323/531 (60%), Positives = 387/531 (72%), Gaps = 52/531 (9%)
Query: 1 MALLLLRNRK-ASALGIPRILRDNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDF 59
+A LLR R SAL P L D + + ++ ++ SG KFD
Sbjct: 3 VASALLRRRALYSALASPSWLHDTSSCYICSISGTHSLVNHPNLRLQRGYHNSG--KFDL 60
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSS-------GIYCGPLRL 112
TDLT PH WYP AR+K R V LHVGPTNSGKTH AL RLE+SSS G+YCGPLRL
Sbjct: 61 TDLTHPHIWYPNAREKKRNVFLHVGPTNSGKTHNALKRLEASSSELLMNSVGVYCGPLRL 120
Query: 113 LAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCK 172
LA EVA+RLNKANV C+LITGQEREE++GAKH +VTVEMAD+ ++Y CAVIDEIQM+GC+
Sbjct: 121 LAREVAQRLNKANVPCNLITGQEREEIEGAKHSSVTVEMADMTTEYQCAVIDEIQMVGCR 180
Query: 173 TRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLG 232
+RGFSFTRALLG+C++ELH+CGDPA VPLIQ+IL+ TGD V VQ YERLSPLVPL LG
Sbjct: 181 SRGFSFTRALLGLCSDELHVCGDPAVVPLIQRILEPTGDVVTVQYYERLSPLVPLKTTLG 240
Query: 233 SFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEF 292
SFSNI+ GDC+VTFSR +IY LK+ IE GKHLCS+VYGSLPPETRT+QAT FND S
Sbjct: 241 SFSNIKAGDCVVTFSRRSIYMLKRRIEMGGKHLCSVVYGSLPPETRTKQATMFNDQDSNL 300
Query: 293 DVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV 352
+VLVASDAIGMGLNLNISRIIFST++KFDG+ R+LTV E+KQIAGRAGRYGSKFPVGEV
Sbjct: 301 NVLVASDAIGMGLNLNISRIIFSTLEKFDGICNRELTVAEIKQIAGRAGRYGSKFPVGEV 360
Query: 353 TCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLS 412
TCL+S+ LPLLH +L PSP++E AGLFP FD++ +YSRLH ILE FL+ AKLS
Sbjct: 361 TCLNSDHLPLLHSALKSPSPIIERAGLFPTFDVLSLYSRLHGTDFFQPILERFLDKAKLS 420
Query: 413 ENYFFANCEEVL------------------------------------------KVATVI 430
+YF A+CE++L KVA ++
Sbjct: 421 PDYFIADCEDMLCCGQAKLGSTLVQPRSNAELVQEEAMRNKKPSQLACMQYRNKKVAAIV 480
Query: 431 DQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPG 481
D+LPL L++KYLFC+SPVD+ DDIS++GL QFA NY+KKGIV+L+EIFTPG
Sbjct: 481 DELPLGLYDKYLFCLSPVDIRDDISTKGLIQFAENYAKKGIVRLKEIFTPG 531
>gi|218193743|gb|EEC76170.1| hypothetical protein OsI_13485 [Oryza sativa Indica Group]
Length = 628
Score = 637 bits (1642), Expect = e-180, Method: Compositional matrix adjust.
Identities = 310/475 (65%), Positives = 367/475 (77%), Gaps = 49/475 (10%)
Query: 56 KFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSS-------GIYCG 108
KFD TDLT PH WYP AR+K R V LHVGPTNSGKTH AL RLE+SSS G+YCG
Sbjct: 57 KFDLTDLTHPHIWYPNAREKKRNVFLHVGPTNSGKTHNALKRLEASSSELLMNSVGVYCG 116
Query: 109 PLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQM 168
PLRLLA EVA+RLNKANV C+LITGQEREE++GAKH +VTVEMAD+ ++Y CAVIDEIQM
Sbjct: 117 PLRLLAREVAQRLNKANVPCNLITGQEREEIEGAKHSSVTVEMADMTTEYQCAVIDEIQM 176
Query: 169 LGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLN 228
+GC++RGFSFTRALLG+C++ELH+CGDPA VPLIQ+IL+ TGD V VQ YERLSPLVPL
Sbjct: 177 VGCRSRGFSFTRALLGLCSDELHVCGDPAVVPLIQRILEPTGDVVTVQYYERLSPLVPLK 236
Query: 229 VPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDA 288
LGSFSNI+ GDC+VTFSR +IY LK+ IE GKHLCS+VYGSLPPETRT+QAT FND
Sbjct: 237 TTLGSFSNIKAGDCVVTFSRRSIYMLKRRIEMGGKHLCSVVYGSLPPETRTKQATMFNDQ 296
Query: 289 SSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFP 348
S +VLVASDAIGMGLNLNISRIIFST++KFDG+ R+LTV E+KQIAGRAGRYGSKFP
Sbjct: 297 DSNLNVLVASDAIGMGLNLNISRIIFSTLEKFDGICNRELTVAEIKQIAGRAGRYGSKFP 356
Query: 349 VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLEN 408
VGEVTCL+S+ LPLLH +L PSP++E AGLFP FD++ +YSRLH ILE FL+
Sbjct: 357 VGEVTCLNSDHLPLLHSALKSPSPIIERAGLFPTFDVLSLYSRLHGTDFFQPILERFLDK 416
Query: 409 AKLSENYFFANCEEVL------------------------------------------KV 426
AKLS +YF A+CE++L KV
Sbjct: 417 AKLSPDYFIADCEDMLCCGQAKLGSTLVQPRSNAELVQEEAMRNKKPSQLACMQYRNKKV 476
Query: 427 ATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPG 481
A ++D+LPL L++KYLFC+SPVD+ DDIS++GL QFA NY+KKGIV+L+EIFTPG
Sbjct: 477 AAIVDELPLGLYDKYLFCLSPVDIRDDISTKGLIQFAENYAKKGIVRLKEIFTPG 531
>gi|14626299|gb|AAK71567.1|AC087852_27 putative mitochondrial RNA helicase [Oryza sativa Japonica Group]
Length = 557
Score = 594 bits (1531), Expect = e-167, Method: Compositional matrix adjust.
Identities = 291/442 (65%), Positives = 345/442 (78%), Gaps = 16/442 (3%)
Query: 56 KFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAW 115
KFD TDLT PH WYP AR+K R V LHVGPTNSGKTH AL RLE+SSSG+YCGPLRLLA
Sbjct: 57 KFDLTDLTHPHIWYPNAREKKRNVFLHVGPTNSGKTHNALKRLEASSSGVYCGPLRLLAR 116
Query: 116 EVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
EVA+RLNKANV C+LITGQEREE++GAKH +VTVEMAD+ ++Y CAVIDEIQM+GC++RG
Sbjct: 117 EVAQRLNKANVPCNLITGQEREEIEGAKHSSVTVEMADMTTEYQCAVIDEIQMVGCRSRG 176
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
FSFTRALLG+C++ELH+CGDPA VPLIQ+IL+ TGD V VQ YERLSPLVPL LGSFS
Sbjct: 177 FSFTRALLGLCSDELHVCGDPAVVPLIQRILEPTGDVVTVQYYERLSPLVPLKTTLGSFS 236
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
NI+ GDC+VTFSR +IY LK+ IE GKHLCS+VYGSLPPETRT+QAT FND S +VL
Sbjct: 237 NIKAGDCVVTFSRRSIYMLKRRIEMGGKHLCSVVYGSLPPETRTKQATMFNDQDSNLNVL 296
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 355
VASDAIGMGLNLNISRIIFST++KFDG+ R+LTV E+KQIAGRAGRYGSKFPVGEVTCL
Sbjct: 297 VASDAIGMGLNLNISRIIFSTLEKFDGICNRELTVAEIKQIAGRAGRYGSKFPVGEVTCL 356
Query: 356 DSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENY 415
+S+ LPLLH +L PSP++E AGLFP FD++ +YSRLH ILE FL+ AKLS +Y
Sbjct: 357 NSDHLPLLHSALKSPSPIIERAGLFPTFDVLSLYSRLHGTDFFQPILERFLDKAKLSPDY 416
Query: 416 FFANCEEVL---------------KVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGL- 459
F A+CE++L A ++ + +R + + IS
Sbjct: 417 FIADCEDMLCCGQAKLGSTLVQPRSNAELVQEEAMRNKKPSQLACMQYRNKETISLIFFE 476
Query: 460 TQFATNYSKKGIVQLREIFTPG 481
QFA NY+KKGIV+L+EIFTPG
Sbjct: 477 MQFAENYAKKGIVRLKEIFTPG 498
>gi|414872749|tpg|DAA51306.1| TPA: hypothetical protein ZEAMMB73_054551 [Zea mays]
Length = 485
Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust.
Identities = 275/387 (71%), Positives = 330/387 (85%)
Query: 95 LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADV 154
++ S+ G+YCGPLRLLA EVA+RLNK NV C+LITGQER E++GAKH +VTVEMAD+
Sbjct: 2 VAEFSSNFVGVYCGPLRLLAREVAQRLNKVNVPCNLITGQERNEIEGAKHSSVTVEMADM 61
Query: 155 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVK 214
++Y CAVIDEIQM+GCK+RG+SFTRALLG+C++ELH+CGDPAAVPLIQ+IL+ TGD V
Sbjct: 62 TTNYQCAVIDEIQMVGCKSRGYSFTRALLGLCSDELHVCGDPAAVPLIQRILEATGDVVT 121
Query: 215 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 274
VQ YERLSPLVPL PLGSFSNI+ GDC+V+FSR IY+LKK IE GKHLCS+VYGSLP
Sbjct: 122 VQYYERLSPLVPLKSPLGSFSNIKAGDCLVSFSRRGIYKLKKRIEREGKHLCSVVYGSLP 181
Query: 275 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 334
PETRT+QAT FND +S+ +VLVASDAIGMGLNLNISRIIFSTM KFDG R+LTV E+K
Sbjct: 182 PETRTKQATMFNDDTSDLNVLVASDAIGMGLNLNISRIIFSTMMKFDGFCNRELTVAEIK 241
Query: 335 QIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHP 394
QIAGRAGRYGSKFPVGEVTCL+ +DLPLLH SL S ++E AGLFP FDL+ +YSRLH
Sbjct: 242 QIAGRAGRYGSKFPVGEVTCLNPQDLPLLHSSLKSASSIIERAGLFPTFDLLSLYSRLHG 301
Query: 395 DSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDI 454
+ ILE FLE AKLS +YF +CE++LKVA ++D LPL L++KYLFC+SPVD++DDI
Sbjct: 302 TDFFHPILERFLEKAKLSPDYFITDCEDMLKVAAIVDDLPLGLYDKYLFCMSPVDVSDDI 361
Query: 455 SSQGLTQFATNYSKKGIVQLREIFTPG 481
S+QGL QFA NY++KGIV+L+EIFTPG
Sbjct: 362 SAQGLVQFAENYARKGIVRLKEIFTPG 388
>gi|2244836|emb|CAB10258.1| RNA helicase like protein [Arabidopsis thaliana]
gi|7268225|emb|CAB78521.1| RNA helicase like protein [Arabidopsis thaliana]
Length = 442
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 271/438 (61%), Positives = 313/438 (71%), Gaps = 62/438 (14%)
Query: 1 MALLLLRNRKASALGIPRILRDNVEPFSLNS----------------------------- 31
MA ++R RK SALGI R+L++++ + L S
Sbjct: 1 MAYSVVRLRKVSALGISRVLQESLNLYELCSFYICFCVVSRRRLDWFNVVSYDGFVLPNV 60
Query: 32 ------------EKIIGAFASVDVIIRSYCSGSG-----------MKKFDFTDLTRPHTW 68
E G + V+ R+Y SG KFDFTDLT PHTW
Sbjct: 61 SADKGSLWRFHFEPEFGDLLRLGVLTRNYRKNSGSPKFDFTGTGTTSKFDFTDLTCPHTW 120
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
YP+ARKK RKVILHVGPTNSGKT+ AL LE SSSG+YCGPLRLLAWEVAKRLNKANV C
Sbjct: 121 YPIARKKKRKVILHVGPTNSGKTYSALKHLEQSSSGVYCGPLRLLAWEVAKRLNKANVPC 180
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQ------MLGCKTR----GFSF 178
DLITGQE++ V+GA H+AVTVEMADV S YDCA+IDEIQ L TR GF+F
Sbjct: 181 DLITGQEKDLVEGATHKAVTVEMADVTSVYDCAIIDEIQASLARLWLKKSTRTFCLGFAF 240
Query: 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQ 238
TRALLGI A+ELHLCGDPA VPL++ IL+VTGDDV+V +YERLSPLVPL VP+ S S+I+
Sbjct: 241 TRALLGIAADELHLCGDPAVVPLVEDILKVTGDDVEVHTYERLSPLVPLKVPVSSVSSIK 300
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
TGDC+VTFSR IY KK IE GKHLCS+VYGSLPPETRT QATRFND +++FDVLVAS
Sbjct: 301 TGDCLVTFSRKDIYAYKKTIERAGKHLCSVVYGSLPPETRTAQATRFNDETNDFDVLVAS 360
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358
DAIGMGLNLNISRIIFST++K+DG E RDLTV E+KQIAGRAGR+ SKFP+GEVTCL E
Sbjct: 361 DAIGMGLNLNISRIIFSTLQKYDGSETRDLTVSEIKQIAGRAGRFQSKFPIGEVTCLHKE 420
Query: 359 DLPLLHKSLLEPSPMLES 376
DLPLLH SL PSP+LE+
Sbjct: 421 DLPLLHSSLKSPSPILEA 438
>gi|302798687|ref|XP_002981103.1| hypothetical protein SELMODRAFT_114130 [Selaginella moellendorffii]
gi|302801642|ref|XP_002982577.1| hypothetical protein SELMODRAFT_116710 [Selaginella moellendorffii]
gi|300149676|gb|EFJ16330.1| hypothetical protein SELMODRAFT_116710 [Selaginella moellendorffii]
gi|300151157|gb|EFJ17804.1| hypothetical protein SELMODRAFT_114130 [Selaginella moellendorffii]
Length = 480
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 232/428 (54%), Positives = 303/428 (70%), Gaps = 7/428 (1%)
Query: 65 PHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKA 124
PHTWYP AR R++IL+VGPTNSGKT AL L+ +SSGIYCGPLRLLAWEVA++LN
Sbjct: 9 PHTWYPYARTMRRRIILYVGPTNSGKTFTALQSLQRASSGIYCGPLRLLAWEVAEKLNSH 68
Query: 125 NVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQ----MLGCKTRGFSFTR 180
NV C L+TGQER E++GA+H+A+TVEMAD+ +Y+CAVIDEIQ M+GC RG++FTR
Sbjct: 69 NVPCSLLTGQERNEIEGAQHKAMTVEMADITREYECAVIDEIQARTRMIGCSKRGYAFTR 128
Query: 181 ALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTG 240
AL G+ A E+HLCGDP V LIQ +L+ T D ++V+ Y RLSPLVPL PL I+ G
Sbjct: 129 ALFGLAAKEIHLCGDPCVVTLIQNLLERTQDTLEVRCYTRLSPLVPLKEPLRDIRRIRGG 188
Query: 241 DCIVTFSRHAIYRLKKAIESRGKHL-CSIVYGSLPPETRTRQATRFNDASSEFDVLVASD 299
DCIV+FSR I+ K+ IE + CS+VYGSLPPETRT+QA RFN A +F +LVASD
Sbjct: 189 DCIVSFSRDEIHTYKRDIEKLHPAINCSVVYGSLPPETRTKQAERFNKADEDFSILVASD 248
Query: 300 AIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359
AIGMGLNLNI RIIF+ + KFDG+ L+V +VKQIAGRAGR+ SK+PVGEVTCL D
Sbjct: 249 AIGMGLNLNIQRIIFTKLDKFDGIARCYLSVMQVKQIAGRAGRFKSKYPVGEVTCLKGSD 308
Query: 360 LPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFAN 419
+ LH++L P+P + +AG+FP FD I +Y +P+ ILE F+ LS +F +
Sbjct: 309 IAHLHRALATPTPAVVAAGVFPTFDQIGLYCTFYPNFPFSAILEKFIATVTLSSMFFLCD 368
Query: 420 CEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFT 479
+L +A ++D +PL + ++LFC PVD ++ I L +FA NY+ V L+ + T
Sbjct: 369 SSNLLAIARMLDDIPLPMDSRFLFCTCPVDKDNRIIMGALLEFARNYAVNRNVPLKRLLT 428
Query: 480 PGLGSLRV 487
P ++RV
Sbjct: 429 P--ATMRV 434
>gi|384254154|gb|EIE27628.1| hypothetical protein COCSUDRAFT_11521 [Coccomyxa subellipsoidea
C-169]
Length = 574
Score = 461 bits (1187), Expect = e-127, Method: Compositional matrix adjust.
Identities = 222/414 (53%), Positives = 296/414 (71%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
TDLT P +WYP AR R++I H+GPTNSGKTH AL L++++SG+YCGPLRLLAWEVA
Sbjct: 52 LTDLTCPASWYPAARMMRRRIIAHMGPTNSGKTHAALLELKAAASGVYCGPLRLLAWEVA 111
Query: 119 KRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSF 178
++LN NV C+LITGQER V GA H A TVEMA V + AV+DE+QMLG +RG +F
Sbjct: 112 EKLNADNVPCNLITGQERRTVPGASHAACTVEMASVTRGVEVAVVDEVQMLGDGSRGHAF 171
Query: 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQ 238
TRALLG+ A LHLCGD AA+PL++Q++ GD ++V++YERL PLVP + L S +++
Sbjct: 172 TRALLGLPAATLHLCGDAAALPLLRQLVADAGDTLEVRTYERLLPLVPQSAALTSLKSVR 231
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
GDC+V FSR ++ +K+ I++ G H IVYG+LP E RT+QAT FN + F+V+ AS
Sbjct: 232 RGDCVVAFSRRDVHAIKRVIDTHGAHQACIVYGALPAEARTQQATLFNAPRTGFNVMAAS 291
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358
DA+GMGLNLNI R+IFS+M+KFDG R LT PEVKQIAGRAGR+GS++ G+VTCL+
Sbjct: 292 DAVGMGLNLNIRRVIFSSMEKFDGTSFRPLTPPEVKQIAGRAGRFGSRYSCGQVTCLNDA 351
Query: 359 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFA 418
D+ LH L +P LE A LFP + + +++ HPD +L LE F + A LS+++FF+
Sbjct: 352 DMAYLHACLGAENPALERACLFPRYQQLALFAEQHPDLNLPDALEQFADRATLSDHFFFS 411
Query: 419 NCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIV 472
+ E + K+A ++ LPL L + Y F ISP D +D I S L FAT YS++G V
Sbjct: 412 DYEAMHKLALMLRHLPLPLRDAYTFAISPADPDDPIVSSALLSFATAYSQRGTV 465
>gi|414872748|tpg|DAA51305.1| TPA: hypothetical protein ZEAMMB73_054551 [Zea mays]
Length = 394
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 218/314 (69%), Positives = 258/314 (82%), Gaps = 12/314 (3%)
Query: 168 MLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPL 227
M+GCK+RG+SFTRALLG+C++ELH+CGDPAAVPLIQ+IL+ TGD V VQ YERLSPLVPL
Sbjct: 1 MVGCKSRGYSFTRALLGLCSDELHVCGDPAAVPLIQRILEATGDVVTVQYYERLSPLVPL 60
Query: 228 NVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFND 287
PLGSFSNI+ GDC+V+FSR IY+LKK IE GKHLCS+VYGSLPPETRT+QAT FND
Sbjct: 61 KSPLGSFSNIKAGDCLVSFSRRGIYKLKKRIEREGKHLCSVVYGSLPPETRTKQATMFND 120
Query: 288 ASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKF 347
+S+ +VLVASDAIGMGLNLNISRIIFSTM KFDG R+LTV E+KQIAGRAGRYGSKF
Sbjct: 121 DTSDLNVLVASDAIGMGLNLNISRIIFSTMMKFDGFCNRELTVAEIKQIAGRAGRYGSKF 180
Query: 348 PVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLE 407
PVGEVTCL+ +DLPLLH SL S ++E AGLFP FDL+ +YSRLH + ILE FLE
Sbjct: 181 PVGEVTCLNPQDLPLLHSSLKSASSIIERAGLFPTFDLLSLYSRLHGTDFFHPILERFLE 240
Query: 408 NAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYS 467
AKLS +YF +CE++LKVA ++D LPL L++KYLFC+SPVD FA NY+
Sbjct: 241 KAKLSPDYFITDCEDMLKVAAIVDDLPLGLYDKYLFCMSPVD------------FAENYA 288
Query: 468 KKGIVQLREIFTPG 481
+KGIV+L+EIFTPG
Sbjct: 289 RKGIVRLKEIFTPG 302
>gi|307106856|gb|EFN55101.1| hypothetical protein CHLNCDRAFT_135006 [Chlorella variabilis]
Length = 548
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/417 (50%), Positives = 276/417 (66%), Gaps = 4/417 (0%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
TDL P +++P AR R V+ H+GPTNSGKTH AL L ++SGIYCGPLRLLAW+V
Sbjct: 19 ITDLGNPASFFPTARALERTVVAHLGPTNSGKTHAALQELRRAASGIYCGPLRLLAWQVH 78
Query: 119 KRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSF 178
+L+ + + C+L+TGQER + +GA H A T EMA S + AV+DEIQM+ ++RG++F
Sbjct: 79 DQLSSSGLPCNLVTGQERRD-EGAAHTACTTEMASTRSVVEVAVLDEIQMIADESRGWAF 137
Query: 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQ 238
TRALLG+ A LH+CGDPAA+PL++QI+ TGD ++V+ YERLSPLV PL S S +Q
Sbjct: 138 TRALLGVPARTLHVCGDPAALPLLEQIVAETGDRLEVRRYERLSPLVAARRPLASLSQVQ 197
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
GDC+V FSR ++ L++ IE G+H C +VYG+LPP+ R QA+ FN + F+VL AS
Sbjct: 198 RGDCVVAFSRRDVHALRQEIEGYGQHRCCVVYGALPPDARQLQASLFNTPRTGFNVLAAS 257
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358
DA+GMGLNL I RIIF+++ K+DG R LT E+KQ+AGRAGRYGS+FP G T E
Sbjct: 258 DAVGMGLNLAIRRIIFTSLSKYDGTAERALTTAEIKQVAGRAGRYGSRFPDGIATATTPE 317
Query: 359 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLS---ENY 415
DL L +L +PS L SA L P+ + M HP L IL F E A+ S Y
Sbjct: 318 DLERLAAALQQPSEELASAYLLPSLAQLEMLHGQHPADKLPAILRRFEEAAQGSLARTQY 377
Query: 416 FFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIV 472
+A EE +AT++ LPL L E + F ISP D +D + L FAT Y+ +G V
Sbjct: 378 RYARYEEQYTLATMLRHLPLSLREAWAFSISPADPDDAPVASALLTFATVYAHRGRV 434
>gi|255079218|ref|XP_002503189.1| predicted protein [Micromonas sp. RCC299]
gi|226518455|gb|ACO64447.1| predicted protein [Micromonas sp. RCC299]
Length = 481
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/423 (47%), Positives = 286/423 (67%), Gaps = 3/423 (0%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D+ P WYPLAR R+V LHVGPTNSGKT+ A+ +L+++ SG+YC PLRLLAWEVA+
Sbjct: 2 DMREPGAWYPLARAMRREVHLHVGPTNSGKTYSAIQQLKAADSGVYCSPLRLLAWEVAEG 61
Query: 121 LN-KANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
LN + V C++ITGQE++ VDGA+H A TVEMAD+ D AV+DE ++G RG++FT
Sbjct: 62 LNNRDGVPCNMITGQEKKPVDGARHVACTVEMADIRRMVDVAVVDEAHLMGDPERGYAFT 121
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQT 239
RA+LGI A ELHLCGDPA VPL+Q++++ GD + V Y RL PL L+ PL S N+++
Sbjct: 122 RAILGIPAKELHLCGDPAMVPLVQKVIEEVGDKLTVHRYTRLQPLKVLDTPLRSIKNVKS 181
Query: 240 GDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFND-ASSEFDVLVAS 298
GDC+V FSR A+++LK+ + + ++YGSLPPE R RQA FND A++ +DVL+AS
Sbjct: 182 GDCLVAFSRKAVHQLKRDVVRQAGLRACVIYGSLPPEARARQAELFNDRATTGYDVLIAS 241
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358
DAIGMGLNL+I R++F+TM+KFDG ++R L PEVKQIAGRAGR+G F G T + +E
Sbjct: 242 DAIGMGLNLSIRRVVFTTMRKFDGEQMRLLEPPEVKQIAGRAGRFGQGFGEGGTTTMVAE 301
Query: 359 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFA 418
LP+L ++ P L + P + + Y P ++L L +A L +YF A
Sbjct: 302 QLPILRHAVAAPVVDLTRCSVAPTLEHVECYLEAVPGATLVEALTALCRDASLPPHYFMA 361
Query: 419 NCEEVLKVATVIDQLPLRLHEKYLFCISPVDMND-DISSQGLTQFATNYSKKGIVQLREI 477
C+ +L A ++++LPL + + ++F ++P ++ D ++ L FA ++++G V +R I
Sbjct: 362 TCDGMLAAAKLVERLPLSVEDHWMFAVAPANVEDGGEGAKALWTFADAFARRGRVGVRII 421
Query: 478 FTP 480
P
Sbjct: 422 KRP 424
>gi|308800936|ref|XP_003075249.1| RNA helicase like protein (ISS) [Ostreococcus tauri]
gi|116061803|emb|CAL52521.1| RNA helicase like protein (ISS), partial [Ostreococcus tauri]
Length = 645
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/421 (47%), Positives = 277/421 (65%), Gaps = 1/421 (0%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D+ P WYPLAR R++ LHVGPTNSGKTH A+ RL+ ++SG+YC PLRLLAWE+++
Sbjct: 39 DMRDPAAWYPLARSMRREITLHVGPTNSGKTHAAMERLKQAASGVYCAPLRLLAWEISES 98
Query: 121 LNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTR 180
+N V+C L+TGQE E A+H + TVEM+DV S YDCAVIDE+Q+L RG+++TR
Sbjct: 99 MNAVGVACTLVTGQEIREAPNARHVSSTVEMSDVSSVYDCAVIDEVQLLSDPHRGYAYTR 158
Query: 181 ALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTG 240
ALLG+ A ELHLCGDP VPL+++I++ TGD + V+ YERLSPL + + S +++ G
Sbjct: 159 ALLGLAAIELHLCGDPRVVPLVKKIVESTGDLLTVKEYERLSPLEVSSEIVKSVKDVREG 218
Query: 241 DCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 300
D +V FSR +Y++K+ +E + ++YG+LPPE R+RQA FN S +DVL+ASDA
Sbjct: 219 DALVAFSRADVYKMKRELEKKSNFRACVIYGALPPEARSRQALLFNKPESGYDVLIASDA 278
Query: 301 IGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFP-VGEVTCLDSED 359
IGMGLNLN+ R+IF+TM KFDGV R L PEV+QIAGRAGRYG + G VT + +
Sbjct: 279 IGMGLNLNVRRVIFTTMSKFDGVGTRHLEAPEVRQIAGRAGRYGLDYAGGGSVTTMKRSE 338
Query: 360 LPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFAN 419
+L +L L+SAG+ P+ + + Y +H +SL L+ AKL+ +Y N
Sbjct: 339 HKILVNALEGELKPLDSAGIAPSLEQVEEYCAIHRGASLLEALQALSNKAKLASHYRMRN 398
Query: 420 CEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFT 479
E + VA ++ + PL L +++ F I+PVD+ D + L F + G V +R I
Sbjct: 399 MSEPIAVAKMLKKFPLALEDQFTFAIAPVDVKDPMVCAALLTFVKTFCTHGRVGVRLISL 458
Query: 480 P 480
P
Sbjct: 459 P 459
>gi|145341985|ref|XP_001416079.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576303|gb|ABO94371.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 471
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/424 (47%), Positives = 279/424 (65%), Gaps = 7/424 (1%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D+ P YPLAR R++ LHVGPTNSGKT+ A+ RL+ + SG+YC PLRLLAWE+++
Sbjct: 10 DMRDPAAAYPLARSMRREITLHVGPTNSGKTYAAMQRLKRAGSGVYCAPLRLLAWEISEN 69
Query: 121 LNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTR 180
+N+ V C L+TGQER A H + TVEM+D+ DCAVIDEIQ+L RG+++TR
Sbjct: 70 MNREGVPCTLVTGQERRVAPNASHDSCTVEMSDLSKVMDCAVIDEIQLLSDPLRGYAYTR 129
Query: 181 ALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTG 240
ALLG+ A ELHLCGDP VPL+++I++ TGD + V+ Y+RLSPL + S +++ G
Sbjct: 130 ALLGLPALELHLCGDPRVVPLVRRIVKSTGDLLVVKEYDRLSPLEVSRDIVKSVKDVRKG 189
Query: 241 DCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 300
D V FSR A+Y LK+ +E + H ++YG LPPETR+RQA FN S +DVL+ASDA
Sbjct: 190 DAFVAFSRSAVYDLKRELEQKSPHRACVIYGGLPPETRSRQAELFNKPDSGYDVLIASDA 249
Query: 301 IGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFP-VGEVTCLDSED 359
IGMGLNLNI R+IF+TM KFDG E+R L PE +QIAGRAGRYG + +G VT D
Sbjct: 250 IGMGLNLNIKRVIFTTMSKFDGSEMRKLAGPETRQIAGRAGRYGLNYADMGIVTTTKKAD 309
Query: 360 LPLLHKSL---LEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYF 416
LL +L LEP L AGL P+ + + Y L P++ L G L+ ++AKL+ ++
Sbjct: 310 YDLLAAALEGELEP---LTQAGLAPSLEQVEEYCELRPEAGLVGALQALSDSAKLAPHFR 366
Query: 417 FANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLRE 476
+ EE + VA ++++LPL L + +LF I+PVD+ D + + +FA + G +R
Sbjct: 367 MRDMEESIAVAKLLEKLPLTLADHFLFSIAPVDIRDSMVVNAMMKFARVFCTHGRAGVRL 426
Query: 477 IFTP 480
I P
Sbjct: 427 ISLP 430
>gi|303283830|ref|XP_003061206.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457557|gb|EEH54856.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 474
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/427 (47%), Positives = 276/427 (64%), Gaps = 6/427 (1%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D+T P WYP AR R V LHVGPTNSGKT AL RL+ + SG+YC PLRLLAWEVA+
Sbjct: 2 DMTNPGRWYPTARTIKRNVHLHVGPTNSGKTWNALQRLKEAESGVYCSPLRLLAWEVAEG 61
Query: 121 LNKA-NVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
LNK N+ CDL+TGQE+ A+H A TVEMADV + VIDE ++G RG++FT
Sbjct: 62 LNKKDNLPCDLVTGQEKSRAQNARHVACTVEMADVHKMREIGVIDEGHLMGDAHRGYAFT 121
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQT 239
RAL+G+ ELH+CGDPA VPL+++I+ GD + + Y+RL L + PL S +++
Sbjct: 122 RALIGLPVKELHVCGDPAMVPLVEKIVAELGDTLTINRYDRLQELNVIETPLKSLKDVEA 181
Query: 240 GDCIVTFSRHAIYRLKKAIESR-GKHLCSIVYGSLPPETRTRQATRFND-ASSEFDVLVA 297
GDC+V FSR A+++LK +E GK C I+YGSLPPE R++QA FN+ S +DVL+A
Sbjct: 182 GDCLVAFSRKAVHQLKDQVEREAGKRAC-IIYGSLPPEARSKQAELFNNREESGYDVLIA 240
Query: 298 SDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357
SDAIGMGLNL+I R+IF++M+KFDG LR+L PEVKQIAGRAGRYG G T + +
Sbjct: 241 SDAIGMGLNLSIRRVIFASMRKFDGEFLRNLEPPEVKQIAGRAGRYGKGSTEGGATTMSA 300
Query: 358 EDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFF 417
+ LPL+ +L P L + P D I +Y PD+ L L F +AK S +YF
Sbjct: 301 DTLPLMKAALAAPVVDLTRCSIAPTLDQIALYCEAKPDAGLVAALSAFTSDAKTSPHYFM 360
Query: 418 ANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMND--DISSQGLTQFATNYSKKGIVQLR 475
E++ A ++ LPL L + ++F ++PV + D S++ L FA + K+G V +R
Sbjct: 361 NAAEQMTDAAKLVAHLPLSLEDHWMFAVAPVSVADPSSPSARALVTFAEAFVKRGRVSVR 420
Query: 476 EIFTPGL 482
I +P +
Sbjct: 421 IIDSPPM 427
>gi|328875555|gb|EGG23919.1| Mitochondrial RNA helicase [Dictyostelium fasciculatum]
Length = 852
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/418 (47%), Positives = 277/418 (66%), Gaps = 4/418 (0%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
+L PH W+P+AR RK ILHVGPTNSGKTH AL RL + +G++CGPLR+LA +V ++
Sbjct: 348 NLKHPHNWFPVARGMKRKFILHVGPTNSGKTHNALKRLMEAENGVFCGPLRMLAHQVYEK 407
Query: 121 LNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTR 180
LN N+ C+L TGQ+ A+H A TVEMA + D AVIDE QML RGF++TR
Sbjct: 408 LNTENIPCNLTTGQQVIVTPNARHTAYTVEMASTRDEVDVAVIDEFQMLSDIDRGFAWTR 467
Query: 181 ALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTG 240
A+LGI A E+HLCGD +V L++++L +TGD ++V Y+RLSPLV P S ++ G
Sbjct: 468 AILGIPAKEIHLCGDNTSVELVKRMLDLTGDTIEVNYYDRLSPLVVDTKP-ASLGRLEKG 526
Query: 241 DCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 300
DC+V FSR + K ++E CS+VYG+LPPE R +Q FND SS+ V+VA+DA
Sbjct: 527 DCVVAFSRREVLTTKASLEKMYGKKCSVVYGALPPEARVQQTRAFNDTSSDVQVIVATDA 586
Query: 301 IGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL 360
IGMGLNLNI RIIFST+KKFDG + R L E+KQIAGRAGR+ S + VG VTC ++ DL
Sbjct: 587 IGMGLNLNIKRIIFSTIKKFDGKQQRLLKHSELKQIAGRAGRFASAYNVGMVTCTNARDL 646
Query: 361 PLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSL--YGILEHFLENAKLSENYFFA 418
P + K L P+ E AG+FP ++ + +S L + S+ ++ F+E+ +L YF
Sbjct: 647 PTIKKLLELPNVANERAGVFPQWEQLETFSTLQDNHSIPFSELMTMFIEHTELDNLYFLE 706
Query: 419 NCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLRE 476
+ E+ L+ A +ID L + + ++Y+F ++P+ +I + L QFAT +S V+LRE
Sbjct: 707 DIEDKLRAAKLIDHLDMEVSDRYIFIMAPIKNGVEIEKK-LVQFATQFSNNKEVRLRE 763
>gi|356573474|ref|XP_003554884.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Glycine max]
Length = 829
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 194/412 (47%), Positives = 279/412 (67%), Gaps = 2/412 (0%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
DLT+PHTW+P AR RK+I H GPTNSGKT+ AL R + SGIYC PLRLLA EV
Sbjct: 281 ADLTKPHTWFPFARAMKRKIIYHCGPTNSGKTYNALQRFMEAKSGIYCSPLRLLAMEVFD 340
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
++N + C L+TGQE++ V + H A TVEMA Y+ AVIDEIQM+ RG+++T
Sbjct: 341 KVNAKGIYCSLLTGQEKKRVPFSNHVACTVEMASAQELYEVAVIDEIQMMADSNRGYAWT 400
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV-PLNVPLGSFSNIQ 238
RALLG+ A+E+HLCGDP+ + ++++I Q TGD++ Q YER PLV LG+F NI+
Sbjct: 401 RALLGLKADEIHLCGDPSVLDIVRKICQDTGDELCEQHYERFKPLVVEAKTLLGNFENIR 460
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
+GDC+V FSR I+ +K AIE + KH C ++YG+LPPETR +QA+ FND S+E+DVLVAS
Sbjct: 461 SGDCVVAFSRREIFEVKLAIEKQTKHRCCVIYGALPPETRRQQASLFNDQSNEYDVLVAS 520
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358
DA+GMGLNLNI R+IF+++ K++G ++ + +VKQIAGRAGR G +P G T + +
Sbjct: 521 DAVGMGLNLNIRRVIFNSLAKYNGDKMVPIPASQVKQIAGRAGRRGCLYPDGLATTMHLD 580
Query: 359 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFA 418
DL L + L +P ++ GLFP ++ + ++S PD + ILE F EN +L +YF
Sbjct: 581 DLDYLIECLKQPFDDVKKVGLFPFYEQVELFSGQLPDLTFPQILEKFGENCRLDGSYFLC 640
Query: 419 NCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK 469
+ K+A ++ ++ L L + + FC +PV++ D + L ++AT++ +K
Sbjct: 641 QHNHIKKIANMLGKVQGLSLKDHFNFCFAPVNVRDPKAMYHLLRYATSFGQK 692
>gi|356550962|ref|XP_003543849.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Glycine max]
Length = 805
Score = 399 bits (1025), Expect = e-108, Method: Compositional matrix adjust.
Identities = 192/412 (46%), Positives = 280/412 (67%), Gaps = 2/412 (0%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
DLT+PHTW+P AR RK+I H GPTNSGKT+ AL R + +GIYC PLRLLA EV
Sbjct: 275 ADLTKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKTGIYCSPLRLLAMEVFD 334
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
++N + C L+TGQE++ V + H A TVEMA Y+ AVIDEIQM+ RG+++T
Sbjct: 335 KVNAKGIYCSLLTGQEKKRVPFSNHVACTVEMASTQELYEVAVIDEIQMMADSNRGYAWT 394
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV-PLNVPLGSFSNIQ 238
RALLG+ A+E+HLCGDP+ + ++++I Q GD++ Q YER PLV LG+ NI+
Sbjct: 395 RALLGLTADEIHLCGDPSVLDIVRKICQDMGDELCEQHYERFKPLVVEAKTLLGNLENIR 454
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
+GDC+V FSR I+ +K AIE + KH C ++YG+LPPETR +QA+ FND S+E+DVLVAS
Sbjct: 455 SGDCVVAFSRREIFEVKLAIEKQTKHRCCVIYGALPPETRRQQASLFNDQSNEYDVLVAS 514
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358
DA+GMGLNLNI R+IF+++ K++G ++ + +VKQIAGRAGR G +P G T L +
Sbjct: 515 DAVGMGLNLNIRRVIFNSLTKYNGDKMVPVPASQVKQIAGRAGRRGCLYPDGLATTLHLD 574
Query: 359 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFA 418
DL L + L +P ++ GLFP+++ + ++S PD + ILE F EN +L +YF
Sbjct: 575 DLDYLIECLKQPFDDVKKVGLFPSYEQVELFSGQLPDLTFTQILEKFGENCRLDGSYFLC 634
Query: 419 NCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK 469
+ K+A +++++ L L +++ FC +PV++ D + L ++AT++ +K
Sbjct: 635 QHNHIKKIANMLEKVQGLSLEDRFNFCFAPVNVRDPKAMYHLLRYATSFGQK 686
>gi|168038100|ref|XP_001771540.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162677267|gb|EDQ63740.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 608
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 194/412 (47%), Positives = 276/412 (66%), Gaps = 2/412 (0%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
DLT+P WYP AR RK+I H GPTNSGKT+ AL R +S+GIYC PLRLLA EV
Sbjct: 83 ADLTKPDAWYPFARAIKRKIIYHQGPTNSGKTYMALKRFMEASNGIYCSPLRLLAMEVFD 142
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
++N + C+L TGQE++ + A H A TVEMA + ++ AVIDE+QM+ + RG+++T
Sbjct: 143 KVNAEGIYCNLHTGQEKKVLPFANHLACTVEMAYLSKQWEVAVIDEVQMMSDEYRGWAWT 202
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSNIQ 238
RA LG+ A+E+H+CGDP+AVPL++ + TGD++ YER PL + L G FSN++
Sbjct: 203 RAFLGLQADEIHVCGDPSAVPLLRSLCVATGDELIENEYERFKPLRLDSKSLNGDFSNVE 262
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
GDCIV FSR I+ +K+ +E C +VYG+LPPETRT+QA FND +S +DVLVAS
Sbjct: 263 AGDCIVAFSRKDIFDVKREVELATNQKCCVVYGALPPETRTQQAKLFNDPNSGYDVLVAS 322
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358
DA+GMGLNLNI R++F ++ KFDG R + P+VKQIAGRAGR GS FP G T S+
Sbjct: 323 DAVGMGLNLNIRRVVFYSLDKFDGDAKRPIPAPQVKQIAGRAGRRGSIFPDGVTTAFYSQ 382
Query: 359 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFA 418
D+P L +SL + +AGLFP ++ + +++ P+ S +LE F E +L +YF
Sbjct: 383 DIPYLEQSLQQSFEPATAAGLFPVYEQVELFASQLPEISFAQLLERFAETCRLDGSYFLC 442
Query: 419 NCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK 469
+ + +VA+V+D++ L L +++ FC +PV++ D S L ++A +S+K
Sbjct: 443 RYDNLKRVASVLDKVKGLSLEDRFNFCFTPVNVRDPQSLGALYRYALAFSQK 494
>gi|326498319|dbj|BAJ98587.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 728
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 191/410 (46%), Positives = 274/410 (66%), Gaps = 2/410 (0%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DLT PHTWYP AR R+V+ H GPTNSGKTH AL+R ++ SG+YC PLRLLA EV +
Sbjct: 181 DLTAPHTWYPFARAMRRRVVYHCGPTNSGKTHNALARFSAAKSGVYCSPLRLLAMEVFDK 240
Query: 121 LNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTR 180
+N V C L TGQE +EV + H A T+EM Y+ AV+DEIQM+G RG+++TR
Sbjct: 241 VNALGVYCTLRTGQEVKEVPFSNHVACTIEMLSTEELYEVAVVDEIQMMGDSVRGYAWTR 300
Query: 181 ALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-VPLNVPLGSFSNIQT 239
A+LGI A+E+HLCGDP+ + ++++I TGDD++V YER PL V LG N+++
Sbjct: 301 AVLGIKADEIHLCGDPSVLKIVRKICADTGDDLEVHQYERFKPLVVEAKSLLGDLKNVRS 360
Query: 240 GDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD 299
GDCIV FSR I+ +K AIE KH C ++YG+LPPETR +QA FN+ +E+DVLVASD
Sbjct: 361 GDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVLVASD 420
Query: 300 AIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359
A+GMGLNLNI R++F ++ K++G + + +VKQIAGRAGR GS +P G T +D
Sbjct: 421 AVGMGLNLNIRRVVFYSLSKYNGDRMVPVAASQVKQIAGRAGRRGSVYPDGLTTTFLLDD 480
Query: 360 LPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFAN 419
L L + L +P + GLFP F+ + M++ P+ + +L+ F +N ++ + YF
Sbjct: 481 LDYLIQCLQQPFEEAQKIGLFPCFEQVEMFASQFPNLTFTDLLDKFRDNCRIDKTYFMCQ 540
Query: 420 CEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ + KVA +++++ L L ++Y FC +PV++ D + L +FAT+YS+
Sbjct: 541 QDGIKKVANMLERVQGLSLKDRYNFCFAPVNIRDPKAMYHLLRFATHYSQ 590
>gi|115458774|ref|NP_001052987.1| Os04g0459800 [Oryza sativa Japonica Group]
gi|113564558|dbj|BAF14901.1| Os04g0459800 [Oryza sativa Japonica Group]
Length = 609
Score = 395 bits (1015), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/417 (46%), Positives = 273/417 (65%), Gaps = 2/417 (0%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
DLT PH WYP AR R+V+ H GPTNSGKTH AL+R ++ SG+YC PLRLLA EV
Sbjct: 62 ADLTAPHAWYPFARAMRRRVVYHCGPTNSGKTHNALTRFAAAKSGVYCSPLRLLAMEVFD 121
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
++N V C L TGQE +EV + H A T+EM Y+ AV+DEIQM+ RG+++T
Sbjct: 122 KVNALGVYCSLRTGQEIKEVPFSNHVACTIEMLSTEEPYEVAVVDEIQMMADPVRGYAWT 181
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-VPLNVPLGSFSNIQ 238
RA+LG+ A+E+HLCGDP+ + ++++I TGDD++V YER PL V LG N++
Sbjct: 182 RAVLGLKADEIHLCGDPSVLKIVRKICADTGDDLEVHQYERFKPLVVEAKTLLGDLKNVR 241
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
+GDCIV FSR I+ +K AIE KH C ++YG+LPPETR +QA FN+ +E+DVLVAS
Sbjct: 242 SGDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVLVAS 301
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358
DA+GMGLNLNI R++F ++ K++G + + +VKQIAGRAGR GS +P G T +
Sbjct: 302 DAVGMGLNLNIRRVVFYSLAKYNGDRMVPVAASQVKQIAGRAGRRGSIYPDGLTTTFLLD 361
Query: 359 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFA 418
DL L + L +P + GLFP F+ + ++ PD + +L+ F EN ++ YF
Sbjct: 362 DLDYLIQCLQQPFEEAKKVGLFPCFEQVESFAIQFPDLTFNELLDKFRENCRVDSTYFMC 421
Query: 419 NCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQL 474
+ E + KVA +++++ L L ++Y FC +PV++ D + L +FATNYS+ V +
Sbjct: 422 HQESIKKVANMLERIQGLSLKDRYNFCFAPVNIRDPKAMYHLLRFATNYSQSRRVSI 478
>gi|223974755|gb|ACN31565.1| unknown [Zea mays]
Length = 551
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 188/410 (45%), Positives = 272/410 (66%), Gaps = 2/410 (0%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
DLT PHTWYP AR R+++ H GPTNSGKTH AL+R ++ SG+YC PLRLLA E+
Sbjct: 4 ADLTAPHTWYPFARAMRRRIVYHCGPTNSGKTHNALTRFAAAKSGVYCSPLRLLAMEIFD 63
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
++N V C L TGQE +EV + H A T+EM Y+ AV+DEIQM+ RGF+++
Sbjct: 64 KVNALGVYCSLRTGQEVKEVPFSNHVACTIEMMSTEELYEVAVVDEIQMMADPVRGFAWS 123
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-VPLNVPLGSFSNIQ 238
RA+LG+ A+E+HLCGDP+ + ++Q+I TGDD+ V YER PL V LG NI+
Sbjct: 124 RAVLGLKADEIHLCGDPSVLKIVQKICADTGDDLVVHQYERFKPLVVEAKTLLGDLKNIR 183
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
+GDC+V FSR I+ +K AIE KH C ++YG+LPPETR +QA FN+ +E+DVL+AS
Sbjct: 184 SGDCVVAFSRKEIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVLIAS 243
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358
DA+GMGLNLNI R++F ++ K++G + + +VKQIAGRAGR GS +P G T +
Sbjct: 244 DAVGMGLNLNIRRVVFYSLAKYNGERMVPVPASQVKQIAGRAGRRGSVYPDGLTTTFLKD 303
Query: 359 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFA 418
DL L + L +P + AG+FP F+ + M++ P+ S +L+ F ++ ++ + YF
Sbjct: 304 DLDYLIQCLQQPFEEAQKAGIFPCFEQVEMFASQFPNLSFNDLLDKFRDSCRIDKTYFMC 363
Query: 419 NCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYS 467
+ + KVA +++++ L L ++Y FC +PV++ D + L +FATNYS
Sbjct: 364 QQDSIKKVANMLERVQGLCLKDRYNFCFAPVNIRDPKAMYHLLRFATNYS 413
>gi|326319838|emb|CBW45782.1| ORW1943Ba0077G13.10 [Oryza rufipogon]
Length = 734
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/417 (46%), Positives = 273/417 (65%), Gaps = 2/417 (0%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
DLT PH WYP AR R+V+ H GPTNSGKTH AL+R ++ SG+YC PLRLLA EV
Sbjct: 187 ADLTAPHAWYPFARAMRRRVVYHCGPTNSGKTHNALTRFAAAKSGVYCSPLRLLAMEVFD 246
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
++N V C L TGQE +EV + H A T+EM Y+ AV+DEIQM+ RG+++T
Sbjct: 247 KVNALGVYCSLRTGQEIKEVPFSNHVACTIEMLSTEEPYEVAVVDEIQMMADPVRGYAWT 306
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-VPLNVPLGSFSNIQ 238
RA+LG+ A+E+HLCGDP+ + ++++I TGDD++V YER PL V LG N++
Sbjct: 307 RAVLGLKADEIHLCGDPSVLKIVRKICADTGDDLEVHQYERFKPLVVEAKTLLGDLKNVR 366
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
+GDCIV FSR I+ +K AIE KH C ++YG+LPPETR +QA FN+ +E+DVLVAS
Sbjct: 367 SGDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVLVAS 426
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358
DA+GMGLNLNI R++F ++ K++G + + +VKQIAGRAGR GS +P G T +
Sbjct: 427 DAVGMGLNLNIRRVVFYSLAKYNGDRMVPVAASQVKQIAGRAGRRGSIYPDGLTTTFLLD 486
Query: 359 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFA 418
DL L + L +P + GLFP F+ + ++ PD + +L+ F EN ++ YF
Sbjct: 487 DLDYLIQCLQQPFEEAKKVGLFPCFEQVESFAIQFPDLTFNELLDKFRENCRVDSTYFMC 546
Query: 419 NCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQL 474
+ E + KVA +++++ L L ++Y FC +PV++ D + L +FATNYS+ V +
Sbjct: 547 HQESIKKVANMLERIQGLSLKDRYNFCFAPVNIRDPKAMYHLLRFATNYSQSRRVSI 603
>gi|38344959|emb|CAD40979.2| OSJNBa0072F16.4 [Oryza sativa Japonica Group]
gi|116310057|emb|CAH67079.1| OSIGBa0097P08.9 [Oryza sativa Indica Group]
gi|116310442|emb|CAH67447.1| H0219H12.4 [Oryza sativa Indica Group]
Length = 734
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/417 (46%), Positives = 273/417 (65%), Gaps = 2/417 (0%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
DLT PH WYP AR R+V+ H GPTNSGKTH AL+R ++ SG+YC PLRLLA EV
Sbjct: 187 ADLTAPHAWYPFARAMRRRVVYHCGPTNSGKTHNALTRFAAAKSGVYCSPLRLLAMEVFD 246
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
++N V C L TGQE +EV + H A T+EM Y+ AV+DEIQM+ RG+++T
Sbjct: 247 KVNALGVYCSLRTGQEIKEVPFSNHVACTIEMLSTEEPYEVAVVDEIQMMADPVRGYAWT 306
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-VPLNVPLGSFSNIQ 238
RA+LG+ A+E+HLCGDP+ + ++++I TGDD++V YER PL V LG N++
Sbjct: 307 RAVLGLKADEIHLCGDPSVLKIVRKICADTGDDLEVHQYERFKPLVVEAKTLLGDLKNVR 366
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
+GDCIV FSR I+ +K AIE KH C ++YG+LPPETR +QA FN+ +E+DVLVAS
Sbjct: 367 SGDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVLVAS 426
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358
DA+GMGLNLNI R++F ++ K++G + + +VKQIAGRAGR GS +P G T +
Sbjct: 427 DAVGMGLNLNIRRVVFYSLAKYNGDRMVPVAASQVKQIAGRAGRRGSIYPDGLTTTFLLD 486
Query: 359 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFA 418
DL L + L +P + GLFP F+ + ++ PD + +L+ F EN ++ YF
Sbjct: 487 DLDYLIQCLQQPFEEAKKVGLFPCFEQVESFAIQFPDLTFNELLDKFRENCRVDSTYFMC 546
Query: 419 NCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQL 474
+ E + KVA +++++ L L ++Y FC +PV++ D + L +FATNYS+ V +
Sbjct: 547 HQESIKKVANMLERIQGLSLKDRYNFCFAPVNIRDPKAMYHLLRFATNYSQSRRVSI 603
>gi|32492143|emb|CAE03376.1| OSJNBa0036B21.27 [Oryza sativa Japonica Group]
Length = 725
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/417 (46%), Positives = 273/417 (65%), Gaps = 2/417 (0%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
DLT PH WYP AR R+V+ H GPTNSGKTH AL+R ++ SG+YC PLRLLA EV
Sbjct: 187 ADLTAPHAWYPFARAMRRRVVYHCGPTNSGKTHNALTRFAAAKSGVYCSPLRLLAMEVFD 246
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
++N V C L TGQE +EV + H A T+EM Y+ AV+DEIQM+ RG+++T
Sbjct: 247 KVNALGVYCSLRTGQEIKEVPFSNHVACTIEMLSTEEPYEVAVVDEIQMMADPVRGYAWT 306
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-VPLNVPLGSFSNIQ 238
RA+LG+ A+E+HLCGDP+ + ++++I TGDD++V YER PL V LG N++
Sbjct: 307 RAVLGLKADEIHLCGDPSVLKIVRKICADTGDDLEVHQYERFKPLVVEAKTLLGDLKNVR 366
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
+GDCIV FSR I+ +K AIE KH C ++YG+LPPETR +QA FN+ +E+DVLVAS
Sbjct: 367 SGDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVLVAS 426
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358
DA+GMGLNLNI R++F ++ K++G + + +VKQIAGRAGR GS +P G T +
Sbjct: 427 DAVGMGLNLNIRRVVFYSLAKYNGDRMVPVAASQVKQIAGRAGRRGSIYPDGLTTTFLLD 486
Query: 359 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFA 418
DL L + L +P + GLFP F+ + ++ PD + +L+ F EN ++ YF
Sbjct: 487 DLDYLIQCLQQPFEEAKKVGLFPCFEQVESFAIQFPDLTFNELLDKFRENCRVDSTYFMC 546
Query: 419 NCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQL 474
+ E + KVA +++++ L L ++Y FC +PV++ D + L +FATNYS+ V +
Sbjct: 547 HQESIKKVANMLERIQGLSLKDRYNFCFAPVNIRDPKAMYHLLRFATNYSQSRRVSI 603
>gi|357167747|ref|XP_003581313.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Brachypodium distachyon]
Length = 712
Score = 394 bits (1013), Expect = e-107, Method: Compositional matrix adjust.
Identities = 190/410 (46%), Positives = 271/410 (66%), Gaps = 2/410 (0%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DLT P TWYP AR R+V+ H GPTNSGKTH AL+R ++ SG+YC PLRLLA EV +
Sbjct: 181 DLTAPQTWYPFARAMRRRVVYHCGPTNSGKTHNALARFSTAKSGVYCSPLRLLAMEVFDK 240
Query: 121 LNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTR 180
+N V C L TGQE +EV + H A T+EM Y+ AV+DEIQM+ RG+++TR
Sbjct: 241 VNALGVYCTLRTGQEIKEVPFSNHVACTIEMLSTEELYEVAVVDEIQMMADSVRGYAWTR 300
Query: 181 ALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV-PLNVPLGSFSNIQT 239
A+LG+ A+E+HLCGDP+ + +++++ TGDD++V YER PLV LG N+++
Sbjct: 301 AVLGLKADEIHLCGDPSVLKIVRKVCADTGDDLEVHQYERFKPLVVEAKTLLGDLKNVRS 360
Query: 240 GDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD 299
GDCIV FSR I+ +K AIE KH C ++YG+LPPETR +QA FN+ +E+DVLVASD
Sbjct: 361 GDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVLVASD 420
Query: 300 AIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359
A+GMGLNLNI R++F ++ K++G ++ + +VKQIAGRAGR GS +P G T S+D
Sbjct: 421 AVGMGLNLNIRRVVFYSLTKYNGDKMVPVAASQVKQIAGRAGRRGSVYPDGLTTTFLSDD 480
Query: 360 LPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFAN 419
L L + L +P + GLFP F+ + M++ PD + +L F EN ++ YF
Sbjct: 481 LDYLIQCLQKPFEEAQKVGLFPCFEQVEMFASQFPDLTFTDLLNKFRENCRIDNTYFMCQ 540
Query: 420 CEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ + KVA +++++ L L ++Y FC +PV+ D + L +FAT+YS+
Sbjct: 541 QDSIKKVANMLERVQGLSLKDRYNFCFAPVNTRDPKAMYHLLRFATHYSQ 590
>gi|414586894|tpg|DAA37465.1| TPA: ATP-dependent RNA helicase SUV3 [Zea mays]
Length = 627
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 188/410 (45%), Positives = 272/410 (66%), Gaps = 2/410 (0%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
DLT PHTWYP AR R+++ H GPTNSGKTH AL+R ++ SG+YC PLRLLA E+
Sbjct: 180 ADLTAPHTWYPFARAMRRRIVYHCGPTNSGKTHNALTRFAAAKSGVYCSPLRLLAMEIFD 239
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
++N V C L TGQE +EV + H A T+EM Y+ AV+DEIQM+ RGF+++
Sbjct: 240 KVNALGVYCSLRTGQEVKEVPFSNHVACTIEMMSTEELYEVAVVDEIQMMADPVRGFAWS 299
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-VPLNVPLGSFSNIQ 238
RA+LG+ A+E+HLCGDP+ + ++Q+I TGDD+ V YER PL V LG NI+
Sbjct: 300 RAVLGLKADEIHLCGDPSVLKIVQKICADTGDDLVVHQYERFKPLVVEAKTLLGDLKNIR 359
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
+GDC+V FSR I+ +K AIE KH C ++YG+LPPETR +QA FN+ +E+DVL+AS
Sbjct: 360 SGDCVVAFSRKEIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVLIAS 419
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358
DA+GMGLNLNI R++F ++ K++G + + +VKQIAGRAGR GS +P G T +
Sbjct: 420 DAVGMGLNLNIRRVVFYSLAKYNGERMVPVPASQVKQIAGRAGRRGSVYPDGLTTTFLKD 479
Query: 359 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFA 418
DL L + L +P + AG+FP F+ + M++ P+ S +L+ F ++ ++ + YF
Sbjct: 480 DLDYLIQCLQQPFEEAQKAGIFPCFEQVEMFASQFPNLSFNDLLDKFRDSCRIDKTYFMC 539
Query: 419 NCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYS 467
+ + KVA +++++ L L ++Y FC +PV++ D + L +FATNYS
Sbjct: 540 QQDSIKKVANMLERVQGLCLKDRYNFCFAPVNIRDPKAMYHLLRFATNYS 589
>gi|222628992|gb|EEE61124.1| hypothetical protein OsJ_15051 [Oryza sativa Japonica Group]
Length = 700
Score = 394 bits (1012), Expect = e-107, Method: Compositional matrix adjust.
Identities = 192/417 (46%), Positives = 273/417 (65%), Gaps = 2/417 (0%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
DLT PH WYP AR R+V+ H GPTNSGKTH AL+R ++ SG+YC PLRLLA EV
Sbjct: 153 ADLTAPHAWYPFARAMRRRVVYHCGPTNSGKTHNALTRFAAAKSGVYCSPLRLLAMEVFD 212
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
++N V C L TGQE +EV + H A T+EM Y+ AV+DEIQM+ RG+++T
Sbjct: 213 KVNALGVYCSLRTGQEIKEVPFSNHVACTIEMLSTEEPYEVAVVDEIQMMADPVRGYAWT 272
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-VPLNVPLGSFSNIQ 238
RA+LG+ A+E+HLCGDP+ + ++++I TGDD++V YER PL V LG N++
Sbjct: 273 RAVLGLKADEIHLCGDPSVLKIVRKICADTGDDLEVHQYERFKPLVVEAKTLLGDLKNVR 332
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
+GDCIV FSR I+ +K AIE KH C ++YG+LPPETR +QA FN+ +E+DVLVAS
Sbjct: 333 SGDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVLVAS 392
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358
DA+GMGLNLNI R++F ++ K++G + + +VKQIAGRAGR GS +P G T +
Sbjct: 393 DAVGMGLNLNIRRVVFYSLAKYNGDRMVPVAASQVKQIAGRAGRRGSIYPDGLTTTFLLD 452
Query: 359 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFA 418
DL L + L +P + GLFP F+ + ++ PD + +L+ F EN ++ YF
Sbjct: 453 DLDYLIQCLQQPFEEAKKVGLFPCFEQVESFAIQFPDLTFNELLDKFRENCRVDSTYFMC 512
Query: 419 NCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQL 474
+ E + KVA +++++ L L ++Y FC +PV++ D + L +FATNYS+ V +
Sbjct: 513 HQESIKKVANMLERIQGLSLKDRYNFCFAPVNIRDPKAMYHLLRFATNYSQSRRVSI 569
>gi|226500860|ref|NP_001151526.1| ATP-dependent RNA helicase SUV3 [Zea mays]
gi|195647420|gb|ACG43178.1| ATP-dependent RNA helicase SUV3 [Zea mays]
Length = 727
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 188/410 (45%), Positives = 272/410 (66%), Gaps = 2/410 (0%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
DLT PHTWYP AR R+++ H GPTNSGKTH AL+R ++ SG+YC PLRLLA E+
Sbjct: 180 ADLTAPHTWYPFARAMRRRIVYHCGPTNSGKTHNALTRFAAAKSGVYCSPLRLLAMEIFD 239
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
++N V C L TGQE +EV + H A T+EM Y+ AV+DEIQM+ RGF+++
Sbjct: 240 KVNALGVYCSLRTGQEVKEVPFSNHVACTIEMMSTEELYEVAVVDEIQMMADPVRGFAWS 299
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-VPLNVPLGSFSNIQ 238
RA+LG+ A+E+HLCGDP+ + ++Q+I TGDD+ V YER PL V LG NI+
Sbjct: 300 RAVLGLKADEIHLCGDPSVLKIVQKICADTGDDLVVHQYERFKPLVVEAKTLLGDLKNIR 359
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
+GDC+V FSR I+ +K AIE KH C ++YG+LPPETR +QA FN+ +E+DVL+AS
Sbjct: 360 SGDCVVAFSRKEIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVLIAS 419
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358
DA+GMGLNLNI R++F ++ K++G + + +VKQIAGRAGR GS +P G T +
Sbjct: 420 DAVGMGLNLNIRRVVFYSLAKYNGERMVPVPASQVKQIAGRAGRRGSVYPDGLTTTFLKD 479
Query: 359 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFA 418
DL L + L +P + AG+FP F+ + M++ P+ S +L+ F ++ ++ + YF
Sbjct: 480 DLDYLIQCLQQPFEEAQKAGIFPCFEQVEMFASQFPNLSFNDLLDKFRDSCRIDKTYFMC 539
Query: 419 NCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYS 467
+ + KVA +++++ L L ++Y FC +PV++ D + L +FATNYS
Sbjct: 540 QQDSIKKVANMLERVQGLCLKDRYNFCFAPVNIRDPKAMYHLLRFATNYS 589
>gi|440793632|gb|ELR14811.1| helicase conserved Cterminal domain containing protein
[Acanthamoeba castellanii str. Neff]
Length = 857
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 206/427 (48%), Positives = 277/427 (64%), Gaps = 39/427 (9%)
Query: 60 TDLTRPHTWYPLARK--KVRKVILHVGPTNSGK--------THQALSRLESSSSGIYCGP 109
TDL PH WYPLAR R+++LHVGPTN TH+AL+RL +S SG+YCGP
Sbjct: 286 TDLRHPHAWYPLARALPGGRRIVLHVGPTNRHAHARAFPSLTHEALTRLAASRSGVYCGP 345
Query: 110 LRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQML 169
LRLLA EV +R+NK V+C L+TGQ A+H A TVEMADV ML
Sbjct: 346 LRLLAEEVFRRMNKEGVACSLLTGQRVVTDPTARHLACTVEMADVAR----------HML 395
Query: 170 GCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNV 229
G + RG+++TRALLG+ A E+HLCG+ + VPL+Q+I Q TG+ + V Y RLSPLV +
Sbjct: 396 GDQDRGWAWTRALLGLPAAEVHLCGNESIVPLVQKICQDTGERLHVHHYTRLSPLVVSDT 455
Query: 230 PLGS--FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFND 287
PLG + +++ GDC+V FSR I+ LK+ IE +H C +VYG+LPP+TR A FND
Sbjct: 456 PLGRKWYKSLRAGDCVVAFSRADIHTLKREIERNTRHRCCVVYGNLPPQTR---AELFND 512
Query: 288 ASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKF 347
+SE++VLVASDAIGMGLNLNISR++FST+ KFDG + R LT E+KQIAGRAGRY S F
Sbjct: 513 PASEYEVLVASDAIGMGLNLNISRVVFSTLHKFDGHKRRLLTDSEIKQIAGRAGRYRSIF 572
Query: 348 PVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLE 407
P GEVT D DLP + ++LL L SAGL P F+ + M+SR++P S Y +L+
Sbjct: 573 PTGEVTAFDGADLPRIRRALLRELEPLPSAGLAPTFEQVSMFSRVYPQSPFYELLDELTL 632
Query: 408 NAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYS 467
A +S +YF ++ + VA +I+ +PL L E++ F I+P FA +++
Sbjct: 633 KAAVSSHYFLCGNDDRVSVAKLIESVPLSLRERFKFSIAP--------------FANSHA 678
Query: 468 KKGIVQL 474
+G V++
Sbjct: 679 SEGEVEM 685
>gi|302769107|ref|XP_002967973.1| hypothetical protein SELMODRAFT_88381 [Selaginella moellendorffii]
gi|300164711|gb|EFJ31320.1| hypothetical protein SELMODRAFT_88381 [Selaginella moellendorffii]
Length = 633
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/416 (47%), Positives = 271/416 (65%), Gaps = 2/416 (0%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DLT+PH W+P R RKVI H GPTNSGKT+ AL R + +GIYC PLRLLA E+ ++
Sbjct: 107 DLTKPHAWFPFTRAMKRKVIYHCGPTNSGKTYTALQRFLQAETGIYCCPLRLLAMEIYEK 166
Query: 121 LNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTR 180
N + V C L TGQER EV A H A TVEMA + + AVIDE+QM + RG+++TR
Sbjct: 167 SNMSGVYCSLHTGQERREVPFATHLASTVEMAVLTKPWSVAVIDEVQMTADEFRGWAWTR 226
Query: 181 ALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-VPLNVPLGSFSNIQT 239
A L + A+E+HLCGDP+A+ L + + T D+ YER PL + G+F I+
Sbjct: 227 AFLALRADEVHLCGDPSALELYKTLCAATCDEFVEHHYERFKPLTIDRTSAKGNFDFIEA 286
Query: 240 GDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD 299
GDC+V FSR I+++K IE R KH C +VYG+LPPETRT+QA FND SS +DVLVASD
Sbjct: 287 GDCVVAFSRKEIFQVKLEIEQRTKHKCCVVYGALPPETRTQQAKLFNDPSSGYDVLVASD 346
Query: 300 AIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359
AIGMGLNLNI R+IF+++ KF+G + + +VKQIAGRAGR GS +P G+VT L + D
Sbjct: 347 AIGMGLNLNIRRVIFNSLDKFNGEQRIPVPASQVKQIAGRAGRRGSLYPEGQVTTLYASD 406
Query: 360 LPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFAN 419
+P L + + +P SAGLFP F+ + +++ PD + +L+ F E+ +L YF
Sbjct: 407 IPYLVECMKQPFEDAPSAGLFPVFEQLELFASQLPDITFSQLLDRFSEHCRLDGTYFLCK 466
Query: 420 CEEVLKVATVIDQL-PLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQL 474
+ + KVA +D + L L ++Y FC +PV+ D S L +FA+ YS+K V+L
Sbjct: 467 NDNLKKVAAALDAIGGLSLEDEYNFCFAPVNSRDPKSMGSLQRFASAYSRKIPVRL 522
>gi|359488988|ref|XP_003633851.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Vitis vinifera]
Length = 806
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/411 (46%), Positives = 274/411 (66%), Gaps = 2/411 (0%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
DLT+PHTW+P AR RK+I H GPTNSGKT+ AL R + GIYC PLRLLA EV
Sbjct: 270 ADLTKPHTWFPFARAMKRKIIYHCGPTNSGKTYNALQRYMEAKKGIYCSPLRLLAMEVFD 329
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
++N + C L TGQE++ V + H + TVEM YD AVIDEIQM+ RG+++T
Sbjct: 330 KVNALGIYCSLHTGQEKKNVPFSNHTSCTVEMVSTDDIYDVAVIDEIQMMSDPCRGYAWT 389
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV-PLNVPLGSFSNIQ 238
RALLG+ A+E+HLCGDP+ + ++++I TGD++ Q YER PLV LG N++
Sbjct: 390 RALLGLKADEIHLCGDPSVLNVVRKICSETGDELFEQHYERFKPLVVEAKTLLGELQNVR 449
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
+GDC+V FSR I+ +K AIE H C ++YG+LPPETR +QA+ FND +E+DVLVAS
Sbjct: 450 SGDCVVAFSRREIFEVKLAIEKHTNHRCCVIYGALPPETRRQQASLFNDPDNEYDVLVAS 509
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358
DA+GMGLNLNI R++F ++ K++G ++ + +VKQIAGRAGR GS++P G T L +
Sbjct: 510 DAVGMGLNLNIRRVVFYSLSKYNGDKIVPVPATQVKQIAGRAGRRGSRYPDGLTTTLHLD 569
Query: 359 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFA 418
DL L + L +P ++ GLFP F+ + +++ PD +L +LE F EN +L +YF
Sbjct: 570 DLDYLIECLKQPFDDIKKVGLFPFFEQVELFAGQLPDVTLSHLLEKFSENCQLDGSYFLC 629
Query: 419 NCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ + KVA ++ ++ L L +++ FC +PV++ D + L +FA++YS+
Sbjct: 630 RHDHIKKVANMLQKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSQ 680
>gi|302761048|ref|XP_002963946.1| hypothetical protein SELMODRAFT_81713 [Selaginella moellendorffii]
gi|300167675|gb|EFJ34279.1| hypothetical protein SELMODRAFT_81713 [Selaginella moellendorffii]
Length = 633
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 199/416 (47%), Positives = 271/416 (65%), Gaps = 2/416 (0%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DLT+PH W+P R RKVI H GPTNSGKT+ AL R + +GIYC PLRLLA E+ ++
Sbjct: 107 DLTKPHAWFPFTRAMKRKVIYHCGPTNSGKTYTALQRFLQAETGIYCCPLRLLAMEIYEK 166
Query: 121 LNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTR 180
N + V C L TGQER EV A H A TVEMA + + AVIDE+QM + RG+++TR
Sbjct: 167 SNMSGVYCSLHTGQERREVPFATHLASTVEMAVLTKPWSVAVIDEVQMTADEFRGWAWTR 226
Query: 181 ALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-VPLNVPLGSFSNIQT 239
A L + A+E+HLCGDP+A+ L + + T D+ YER PL + G+F I+
Sbjct: 227 AFLALRADEVHLCGDPSALELYKTLCAATCDEFVEHHYERFKPLTIDRTSAKGNFDFIEA 286
Query: 240 GDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD 299
GDC+V FSR I+++K IE R KH C +VYG+LPPETRT+QA FND SS +DVLVASD
Sbjct: 287 GDCVVAFSRKEIFQVKLEIEQRTKHKCCVVYGALPPETRTQQAKLFNDPSSGYDVLVASD 346
Query: 300 AIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359
AIGMGLNLNI R+IF+++ KF+G + + +VKQIAGRAGR GS +P G+VT L + D
Sbjct: 347 AIGMGLNLNIRRVIFNSLDKFNGEQRIPVPASQVKQIAGRAGRRGSLYPEGQVTTLYASD 406
Query: 360 LPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFAN 419
+P L + + +P SAGLFP F+ + +++ PD + +L+ F E+ +L YF
Sbjct: 407 IPYLVECMKQPFEDAPSAGLFPVFEQLELFASQLPDITFSQLLDRFSEHCRLDGTYFLCK 466
Query: 420 CEEVLKVATVIDQL-PLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQL 474
+ + KVA +D + L L ++Y FC +PV+ D S L +FA+ YS+K V+L
Sbjct: 467 NDNLKKVAAALDAIGGLSLEDEYNFCFAPVNSRDPKSMGSLQRFASAYSRKIPVRL 522
>gi|449495319|ref|XP_004159798.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Cucumis sativus]
Length = 795
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/410 (46%), Positives = 272/410 (66%), Gaps = 2/410 (0%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
DLT+PHTW+P AR RK+I H GPTNSGKT+ AL R + GIYC PLRLLA EV
Sbjct: 280 ADLTKPHTWFPFARAMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 339
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
++N V C L+TGQE++ + + H A TVEM Y+ AVIDEIQM+ RG+++T
Sbjct: 340 KVNAHGVYCSLLTGQEKKLLPFSSHIACTVEMVSTEDLYEIAVIDEIQMMSDPCRGYAWT 399
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV-PLNVPLGSFSNIQ 238
RALLG+ A+E+HLCGDP+ + ++++I TGD++ Q YER PLV LG F N++
Sbjct: 400 RALLGLKADEIHLCGDPSVLNVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDFKNVR 459
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
+GDCIV FSR I+ +K AIE KH C ++YGSLPPETR QA+ FND +EFDVLVAS
Sbjct: 460 SGDCIVAFSRREIFEVKLAIEKFTKHRCCVIYGSLPPETRRHQASLFNDQDNEFDVLVAS 519
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358
DA+GMGLNLNI R++F + KF+G ++ + +VKQIAGRAGR GS++P G T +
Sbjct: 520 DAVGMGLNLNIGRVVFYNLAKFNGDKIVPVPASQVKQIAGRAGRRGSRYPDGLTTTFCLD 579
Query: 359 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFA 418
DL L + L +P ++ GLFP+F+ + +++ + +L+ F EN +L +YF
Sbjct: 580 DLDYLIECLKQPFDEVKKIGLFPSFEQVELFAGQISKVAFAELLQKFSENCRLDGSYFLC 639
Query: 419 NCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYS 467
+ + KVA +++++ L L ++Y FC +PV++ D + L +FA++YS
Sbjct: 640 RHDNIKKVANMLEKVSGLSLEDRYNFCFAPVNVRDPKAMYHLLRFASSYS 689
>gi|449441634|ref|XP_004138587.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Cucumis sativus]
Length = 777
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 192/410 (46%), Positives = 272/410 (66%), Gaps = 2/410 (0%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
DLT+PHTW+P AR RK+I H GPTNSGKT+ AL R + GIYC PLRLLA EV
Sbjct: 262 ADLTKPHTWFPFARAMKRKIIYHCGPTNSGKTYNALQRFMEAKKGIYCSPLRLLAMEVFD 321
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
++N V C L+TGQE++ + + H A TVEM Y+ AVIDEIQM+ RG+++T
Sbjct: 322 KVNAHGVYCSLLTGQEKKLLPFSSHIACTVEMVSTEDLYEIAVIDEIQMMSDPCRGYAWT 381
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV-PLNVPLGSFSNIQ 238
RALLG+ A+E+HLCGDP+ + ++++I TGD++ Q YER PLV LG F N++
Sbjct: 382 RALLGLKADEIHLCGDPSVLNVVRKICSETGDELHEQHYERFKPLVVEAKTLLGDFKNVR 441
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
+GDCIV FSR I+ +K AIE KH C ++YGSLPPETR QA+ FND +EFDVLVAS
Sbjct: 442 SGDCIVAFSRREIFEVKLAIEKFTKHRCCVIYGSLPPETRRHQASLFNDQDNEFDVLVAS 501
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358
DA+GMGLNLNI R++F + KF+G ++ + +VKQIAGRAGR GS++P G T +
Sbjct: 502 DAVGMGLNLNIGRVVFYNLAKFNGDKIVPVPASQVKQIAGRAGRRGSRYPDGLTTTFCLD 561
Query: 359 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFA 418
DL L + L +P ++ GLFP+F+ + +++ + +L+ F EN +L +YF
Sbjct: 562 DLDYLIECLKQPFDEVKKIGLFPSFEQVELFAGQISKVAFAELLQKFSENCRLDGSYFLC 621
Query: 419 NCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYS 467
+ + KVA +++++ L L ++Y FC +PV++ D + L +FA++YS
Sbjct: 622 RHDNIKKVANMLEKVSGLSLEDRYNFCFAPVNVRDPKAMYHLLRFASSYS 671
>gi|147834594|emb|CAN60906.1| hypothetical protein VITISV_028450 [Vitis vinifera]
Length = 906
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 190/410 (46%), Positives = 273/410 (66%), Gaps = 2/410 (0%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DLT+PHTW+P AR RK+I H GPTNSGKT+ AL R + GIYC PLRLLA EV +
Sbjct: 318 DLTKPHTWFPFARAMKRKIIYHCGPTNSGKTYNALQRYMEAKKGIYCSPLRLLAMEVFDK 377
Query: 121 LNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTR 180
+N + C L TGQE++ V + H + TVEM YD AVIDEIQM+ RG+++TR
Sbjct: 378 VNALGIYCSLHTGQEKKNVPFSNHTSCTVEMVSTDDIYDVAVIDEIQMMSDPCRGYAWTR 437
Query: 181 ALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV-PLNVPLGSFSNIQT 239
ALLG+ A+E+HLCGDP+ + ++++I TGD++ Q YER PLV LG N+++
Sbjct: 438 ALLGLKADEIHLCGDPSVLNVVRKICSETGDELFEQHYERFKPLVVEAKTLLGELQNVRS 497
Query: 240 GDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD 299
GDC+V FSR I+ +K AIE H C ++YG+LPPETR +QA+ FND +E+DVLVASD
Sbjct: 498 GDCVVAFSRREIFEVKLAIEKHTNHRCCVIYGALPPETRRQQASLFNDPDNEYDVLVASD 557
Query: 300 AIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359
A+GMGLNLNI R++F ++ K++G ++ + +VKQIAGRAGR GS++P G T L +D
Sbjct: 558 AVGMGLNLNIRRVVFYSLSKYNGDKIVPVPATQVKQIAGRAGRRGSRYPDGLTTTLHLDD 617
Query: 360 LPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFAN 419
L L + L +P ++ GLFP F+ + +++ PD +L +LE F EN L +YF
Sbjct: 618 LDYLIECLKQPFDDIKKVGLFPFFEQVELFAGQLPDVTLSHLLEKFSENCXLDGSYFLCR 677
Query: 420 CEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ + KVA ++ ++ L L +++ FC +PV++ D + L +FA++YS+
Sbjct: 678 HDHIKKVANMLQKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSQ 727
>gi|255566773|ref|XP_002524370.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
gi|223536331|gb|EEF37981.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
Length = 820
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 189/412 (45%), Positives = 273/412 (66%), Gaps = 2/412 (0%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
DL +PHTW+P AR RK+I H GPTNSGKT+ AL R + G+YC PLRLLA EV
Sbjct: 290 ADLRKPHTWFPFARVMKRKIIYHCGPTNSGKTYNALQRFMEAKKGVYCSPLRLLAMEVFD 349
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
++N V C L TGQE++ V A H A TVEM YD AVIDEIQM+G RG+++T
Sbjct: 350 KVNAHGVYCSLYTGQEKKTVPFANHVACTVEMVSSDELYDVAVIDEIQMMGDAFRGYAWT 409
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV-PLNVPLGSFSNIQ 238
RALLG+ A+E+HLCGDP+ + ++++I TGD++ Y R PLV LG N++
Sbjct: 410 RALLGLKADEIHLCGDPSVLNIVRKICSETGDELIENHYGRFKPLVVEAKTLLGDLKNVR 469
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
+GDC+V FSR I+ +K IE KH C ++YG+LPPETR +QA FND +EFDVLVAS
Sbjct: 470 SGDCVVAFSRREIFEVKLTIEKHTKHRCCVIYGALPPETRRQQANLFNDQDNEFDVLVAS 529
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358
DA+GMGLNLNI R++F+++ K++G ++ + +VKQIAGRAGR GS++P G T L +
Sbjct: 530 DAVGMGLNLNIRRVVFNSLSKYNGDKIVSVPASQVKQIAGRAGRRGSRYPDGLTTTLHLD 589
Query: 359 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFA 418
DL L + L +P ++ GLFP F+ + +++ P+ + +LE F E+ +L +YF
Sbjct: 590 DLNYLIECLKQPFEEVKKVGLFPFFEQVELFAGKIPNITFPQMLEKFGESCRLDGSYFLC 649
Query: 419 NCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK 469
+ + KVA +++++ L L +++ FC +PV++ D + L +FA++YS+K
Sbjct: 650 RHDHIKKVANMLEKVQGLSLEDRFNFCFAPVNIRDPKAMYHLLRFASSYSQK 701
>gi|15242497|ref|NP_198800.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
gi|332007099|gb|AED94482.1| putative ATP-dependent RNA helicase [Arabidopsis thaliana]
Length = 776
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/413 (44%), Positives = 275/413 (66%), Gaps = 2/413 (0%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
D DLT+P TW+P AR RK++ H GPTNSGKT+ AL R + +G+YC PLRLLA EV
Sbjct: 255 DTADLTKPATWFPFARAMKRKIVYHCGPTNSGKTYNALQRFMEAKNGLYCSPLRLLAMEV 314
Query: 118 AKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
++N + C L+TGQE++ V A H + TVEM Y+ AV+DEIQM+ +RG +
Sbjct: 315 FDKVNALGIYCSLLTGQEKKYVPFANHVSCTVEMVSTDELYEVAVLDEIQMMADPSRGHA 374
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV-PLNVPLGSFSN 236
+T+ALLG+ A+E+HLCGDP+ + +++++ TGD++ + YER PLV LG N
Sbjct: 375 WTKALLGLKADEIHLCGDPSVLDIVRKMCADTGDELVEEHYERFKPLVVEAKTLLGELKN 434
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296
+++GDC+V FSR I+ +K AIE H C ++YG+LPPETR +QA FND +E+DVLV
Sbjct: 435 VKSGDCVVAFSRREIFEVKMAIEKHTNHRCCVIYGALPPETRRQQAKLFNDQENEYDVLV 494
Query: 297 ASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 356
ASDA+GMGLNLNI R++F ++ K++G ++ + +VKQIAGRAGR GS++P G T L
Sbjct: 495 ASDAVGMGLNLNIRRVVFYSLNKYNGDKIVPVAASQVKQIAGRAGRRGSRYPDGLTTTLH 554
Query: 357 SEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYF 416
EDL L + L +P + GLFP F+ I +++ PD + +LEHF ++ +L +YF
Sbjct: 555 LEDLNYLIECLQQPFDEVTKVGLFPFFEQIELFAAQVPDMAFSNLLEHFGKHCRLDGSYF 614
Query: 417 FANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ V KVA +++++ L L +++ FC +PV++ + + L +FA++YS+
Sbjct: 615 LCRHDHVKKVANMLEKVEGLSLEDRFNFCFAPVNIRNPRAMHNLYRFASSYSQ 667
>gi|10176976|dbj|BAB10208.1| mitochondrial RNA helicase-like protein [Arabidopsis thaliana]
Length = 769
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/413 (44%), Positives = 275/413 (66%), Gaps = 2/413 (0%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
D DLT+P TW+P AR RK++ H GPTNSGKT+ AL R + +G+YC PLRLLA EV
Sbjct: 255 DTADLTKPATWFPFARAMKRKIVYHCGPTNSGKTYNALQRFMEAKNGLYCSPLRLLAMEV 314
Query: 118 AKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
++N + C L+TGQE++ V A H + TVEM Y+ AV+DEIQM+ +RG +
Sbjct: 315 FDKVNALGIYCSLLTGQEKKYVPFANHVSCTVEMVSTDELYEVAVLDEIQMMADPSRGHA 374
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV-PLNVPLGSFSN 236
+T+ALLG+ A+E+HLCGDP+ + +++++ TGD++ + YER PLV LG N
Sbjct: 375 WTKALLGLKADEIHLCGDPSVLDIVRKMCADTGDELVEEHYERFKPLVVEAKTLLGELKN 434
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296
+++GDC+V FSR I+ +K AIE H C ++YG+LPPETR +QA FND +E+DVLV
Sbjct: 435 VKSGDCVVAFSRREIFEVKMAIEKHTNHRCCVIYGALPPETRRQQAKLFNDQENEYDVLV 494
Query: 297 ASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 356
ASDA+GMGLNLNI R++F ++ K++G ++ + +VKQIAGRAGR GS++P G T L
Sbjct: 495 ASDAVGMGLNLNIRRVVFYSLNKYNGDKIVPVAASQVKQIAGRAGRRGSRYPDGLTTTLH 554
Query: 357 SEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYF 416
EDL L + L +P + GLFP F+ I +++ PD + +LEHF ++ +L +YF
Sbjct: 555 LEDLNYLIECLQQPFDEVTKVGLFPFFEQIELFAAQVPDMAFSNLLEHFGKHCRLDGSYF 614
Query: 417 FANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ V KVA +++++ L L +++ FC +PV++ + + L +FA++YS+
Sbjct: 615 LCRHDHVKKVANMLEKVEGLSLEDRFNFCFAPVNIRNPRAMHNLYRFASSYSQ 667
>gi|297805736|ref|XP_002870752.1| hypothetical protein ARALYDRAFT_356016 [Arabidopsis lyrata subsp.
lyrata]
gi|297316588|gb|EFH47011.1| hypothetical protein ARALYDRAFT_356016 [Arabidopsis lyrata subsp.
lyrata]
Length = 777
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 185/419 (44%), Positives = 276/419 (65%), Gaps = 2/419 (0%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
D DLT+P TW+P AR RK++ H GPTNSGKT+ AL R + +G+YC PLRLLA EV
Sbjct: 255 DTADLTKPATWFPFARAMKRKIVYHCGPTNSGKTYNALQRFMEAKNGLYCSPLRLLAMEV 314
Query: 118 AKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
++N + C L+TGQE++ V A H + TVEM Y+ AVIDEIQM+ +RG +
Sbjct: 315 FDKVNALGIYCSLLTGQEKKHVPFANHVSCTVEMVSTDELYEVAVIDEIQMMADPSRGHA 374
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV-PLNVPLGSFSN 236
+T+ALLG+ A+E+HLCGDP+ + +++++ TGD++ + YER PLV LG N
Sbjct: 375 WTKALLGLKADEIHLCGDPSVLDIVRKMCADTGDELVEEHYERFKPLVVEAKTLLGDLKN 434
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296
+++GDC+V FSR I+ +K AIE H C ++YG+LPPETR +QA FND +E+DVLV
Sbjct: 435 VKSGDCVVAFSRREIFEVKMAIEKHTNHRCCVIYGALPPETRRQQANLFNDQENEYDVLV 494
Query: 297 ASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 356
ASDA+GMGLNLNI R++F ++ K++G ++ + +VKQIAGRAGR GS++P G T L
Sbjct: 495 ASDAVGMGLNLNIRRVVFYSLNKYNGDKIVPVAASQVKQIAGRAGRRGSRYPDGLTTTLH 554
Query: 357 SEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYF 416
EDL L + L +P + GLFP F+ I +++ PD + +L+HF ++ +L +YF
Sbjct: 555 LEDLNYLIECLQQPFDEVTKVGLFPFFEQIELFAAQVPDMAFSKLLDHFGKHCRLDGSYF 614
Query: 417 FANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQL 474
+ V KVA +++++ L L +++ FC +PV++ + + L +FA+ YS+ V +
Sbjct: 615 LCRHDHVKKVANMLEKVQGLSLEDRFNFCFAPVNIRNPKAMYQLYRFASTYSQDTPVNI 673
>gi|196009822|ref|XP_002114776.1| hypothetical protein TRIADDRAFT_58600 [Trichoplax adhaerens]
gi|190582838|gb|EDV22910.1| hypothetical protein TRIADDRAFT_58600 [Trichoplax adhaerens]
Length = 681
Score = 382 bits (982), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/417 (46%), Positives = 275/417 (65%), Gaps = 7/417 (1%)
Query: 60 TDLTRPHTWYPLARKKV-RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
++ P +WY AR RK+I H GPTNSGKT+ AL + + IYC PLRLLA E+
Sbjct: 152 SNFRSPVSWYQEARNIAPRKIIYHAGPTNSGKTYHALHKFFKAEKAIYCCPLRLLAHEIY 211
Query: 119 KRLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
+R +ANV CDLITG+ER VD ++H + TVEMA++ YD +IDEIQM+ R
Sbjct: 212 RRSLEANVKCDLITGEERLYVDPNGFSSQHVSCTVEMANINEHYDIGIIDEIQMIKDDLR 271
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-VPLNVPLGS 233
GF++TRALLG+CA ELHLCGDP+ + LI+++ GD+ +VQ Y+RL PL V N G
Sbjct: 272 GFAWTRALLGLCAFELHLCGDPSGIDLIRKLADSCGDEFEVQRYDRLVPLSVQKNSFDGK 331
Query: 234 FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293
SN+ GDC+V FSR +++LK ++ES+ H C+I+YG LP TR QA FND +++++
Sbjct: 332 LSNVTKGDCVVAFSRKELFKLKYSVESKTDHKCAIIYGGLPSVTRAHQADLFNDPNNDYN 391
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
VLVASDAIGMGLNLNI RIIF+++ KFDG+E+ LT +Q+AGRAGR+ S F +GE+T
Sbjct: 392 VLVASDAIGMGLNLNIKRIIFNSLMKFDGLEITSLTPSHARQVAGRAGRFRSDFNIGEIT 451
Query: 354 CLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSE 413
L +DLP++ + L P ++ AGL + + ++S P++S IL+ F K+ +
Sbjct: 452 TLFVDDLPIIQRLLDTPIEPIQRAGLGLTWSDVELFSYYLPEASFTDILDLFSNLVKVGD 511
Query: 414 NYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK 469
+F EE VA ++D + L L EKY+FC++P+D + + S + +FAT+ K+
Sbjct: 512 KFFICRNEEFKNVAAIVDTVEGLLLKEKYIFCLAPIDHRNPLMSSAVLKFATHVGKR 568
>gi|301104419|ref|XP_002901294.1| ATP-dependent RNA helicase SUPV3L1, putative [Phytophthora
infestans T30-4]
gi|262100769|gb|EEY58821.1| ATP-dependent RNA helicase SUPV3L1, putative [Phytophthora
infestans T30-4]
Length = 817
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 199/437 (45%), Positives = 291/437 (66%), Gaps = 9/437 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSS--GIYCGPLRLLAWE 116
TDL PH YP A RK+I H GPTNSGKTHQAL RL+ + GIYCGPLRLLA E
Sbjct: 243 LTDLRLPHEMYPFATAMKRKIIYHEGPTNSGKTHQALERLKQAGEDGGIYCGPLRLLALE 302
Query: 117 VAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGF 176
+ +RLN + L+TGQE++ V + H + TVEMA++ +D AV+DEIQ++G RG+
Sbjct: 303 IFERLNADGLYTSLVTGQEKKLVPYSTHVSCTVEMANINRPWDVAVVDEIQLIGDPQRGW 362
Query: 177 SFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSN 236
++TRAL G+ ANE+H+CG AV L+++ + TGDD +++SYER SPL L S+S+
Sbjct: 363 AWTRALFGLQANEIHVCGSGEAVHLVKKFAETTGDDFELRSYERRSPLEIAPTHLASYSH 422
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296
I++GDC+V FSR I+++K+ IE + C I+YG LPPETR++QA FND +++F++LV
Sbjct: 423 IRSGDCVVAFSRRDIFQIKRDIEVKTGQKCCIIYGQLPPETRSQQARLFNDRNNDFNILV 482
Query: 297 ASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPE--VKQIAGRAGRYGSKFPVGEVTC 354
ASDAIGMGLNLNI R++F+T+KK+ G + +P KQIAGRAGRYGS F GE TC
Sbjct: 483 ASDAIGMGLNLNIRRVVFATVKKYSGSSGGMIDIPPSLAKQIAGRAGRYGSDFASGEATC 542
Query: 355 LDSEDLPLLHKSLLE-PSPMLESAGLFPNFDLIYMYSRLHPD-SSLYGILEHFLENAKLS 412
+ EDL L +S E P+P L SAGLFP+ + + ++R P + L +++ ++ A+L
Sbjct: 543 VLEEDLEYLKESYDEVPTP-LTSAGLFPSSEQMEEFARQLPGITDLADLVDKYVMLARLD 601
Query: 413 ENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIV 472
+YF N +++ AT++ + L L +++ FC+SPV + + ++ + ++A +S V
Sbjct: 602 GDYFMCNHQDMKDAATLLRETELTLSDRFTFCMSPVGLRNPLARRVFLEYARAHSLGQSV 661
Query: 473 QLREIFTPGLGSLRVAE 489
+L +I+ P R AE
Sbjct: 662 RL-DIYLPKYAP-RTAE 676
>gi|412989959|emb|CCO20601.1| predicted protein [Bathycoccus prasinos]
Length = 745
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 203/450 (45%), Positives = 273/450 (60%), Gaps = 36/450 (8%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D+ +P WYPLAR R++ILHVGPTNSGKTH A+ RL+ +SSG+YC PLRLLAWE+++
Sbjct: 153 DMKKPGKWYPLARTMQREIILHVGPTNSGKTHAAMERLKRASSGVYCSPLRLLAWEISES 212
Query: 121 LNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTR 180
LNK CDL+TGQE + V+ A+H A TVEM DV DCAVIDEI ++G RG++FTR
Sbjct: 213 LNKFGTKCDLVTGQELKRVENAEHIACTVEMVDVNKVVDCAVIDEIHLIGDDFRGYAFTR 272
Query: 181 ALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS----- 235
ALLG A E+HLCGD + V LI++I + TGD +++++YERLS PLNV FS
Sbjct: 273 ALLGTPALEVHLCGDTSCVELIEKICKDTGDKLRIRNYERLS---PLNVAEEHFSKKRLE 329
Query: 236 -NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
NI+ GDC V FSR A+Y LK IE R ++YG LPPE R+RQA FN S +D+
Sbjct: 330 QNIEKGDCFVAFSRKAVYALKSEIERRVPLRACVIYGGLPPEARSRQAELFNKPDSGYDL 389
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKF---PVGE 351
L+ASDAIGMGLNLNI RIIF+ + KFDGVE+R L+ PEVKQIAGRAGRY + G
Sbjct: 390 LIASDAIGMGLNLNIRRIIFNELTKFDGVEIRQLSSPEVKQIAGRAGRYKMSYYDKGGGV 449
Query: 352 VTCLDS------------------------EDLPLLHKSLLEPSPMLESAGLFPNFDLIY 387
VT D L + L P L++AGL P F+ I
Sbjct: 450 VTTTDDGMVLDGNRKNGDNAKSDIIKSSGVSGLQFIQNQLNAPVEALKTAGLAPTFEQIL 509
Query: 388 MYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISP 447
Y ++L ++ +A + + Y +EV+++A ++ L + + + Y F +SP
Sbjct: 510 EYCSKVEGATLEDAMKALSSDAIVPKYYKMRKSDEVIRLAKYLENLGMEIEDHYTFSVSP 569
Query: 448 VDMNDDISSQGLTQFATNYSKKGIVQLREI 477
++ S + L FA + +G V ++ I
Sbjct: 570 TSVDCLHSMKTLMNFAKAFLNEGHVSVKLI 599
>gi|302828636|ref|XP_002945885.1| hypothetical protein VOLCADRAFT_41250 [Volvox carteri f.
nagariensis]
gi|300268700|gb|EFJ52880.1| hypothetical protein VOLCADRAFT_41250 [Volvox carteri f.
nagariensis]
Length = 507
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 199/433 (45%), Positives = 271/433 (62%), Gaps = 15/433 (3%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
TDLTRP +WYPLAR RKV+ H+GPTNSGKTH AL L+S+SSGIYCGPLRLLA EVA
Sbjct: 1 LTDLTRPASWYPLARSLQRKVVAHLGPTNSGKTHAALQALKSASSGIYCGPLRLLACEVA 60
Query: 119 KRLNKANVSCDLITGQEREEVDG-------AKH-RAVTVEMADVVSDYDCAVIDEIQMLG 170
RL + C L+TGQE G A H D AV+DEIQMLG
Sbjct: 61 DRLTAEGLPCHLVTGQEVRPATGPAGEPKQASHTAGAPGGGGAASWALDVAVLDEIQMLG 120
Query: 171 CKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVP 230
+ RG+++TRALLG+ A E+H+ GDPA +PL++ + GD+++V+ Y RLSPLV +
Sbjct: 121 DRLRGWAWTRALLGLAAREVHVAGDPAVLPLLRALAAECGDELEVRRYRRLSPLVVQSEA 180
Query: 231 LGSFSNIQTGDCIVTFSRHAIYRLKKAI-ESRGKHLCSIVYGSLPPETRTRQATRFN--- 286
LGS + + GDC+V FSR +++ L++ + G+ C +VYG+LPPE R +QA FN
Sbjct: 181 LGSVARVAGGDCLVAFSRRSLHGLRREVARCTGREAC-LVYGALPPEARRQQAALFNADP 239
Query: 287 DASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346
A S DVL ASDAIGMGLNLNI R++F+++ K+DG +R L EV+QIAGRAGR+ S
Sbjct: 240 AAESGGDVLCASDAIGMGLNLNIRRVVFTSLTKYDGTAVRPLQPAEVRQIAGRAGRFSSS 299
Query: 347 FPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFL 406
P G VT L SEDL LH++L +P + A L P+ + + Y+ LHP+ L L F
Sbjct: 300 HPAGYVTTLRSEDLGALHRALAQPPEHITHACLLPSSEALAEYAALHPERPLATSLLTFA 359
Query: 407 ENAKLSENYFFANCEEVLKVATVIDQLP--LRLHEKYLFCISPVDMNDDISSQGLTQFAT 464
A+L +Y + N E + +A+ + +L + E LFC +P DM+D + + L +FA
Sbjct: 360 ATARLGPSYMYGNYEGMYGIASALRELSEDMSYEEMMLFCTAPADMDDPVVASALLRFAQ 419
Query: 465 NYSKKGIVQLREI 477
Y ++G V +I
Sbjct: 420 LYCRRGRVGPEDI 432
>gi|281204259|gb|EFA78455.1| Mitochondrial RNA helicase [Polysphondylium pallidum PN500]
Length = 889
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 194/401 (48%), Positives = 264/401 (65%), Gaps = 3/401 (0%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
+ DL PH W+P AR RK +LHVGPTNSGKTH AL L+S+ SG+YCGPLRLLA E+
Sbjct: 366 EMADLKYPHRWFPEARAIKRKFVLHVGPTNSGKTHNALEALKSADSGVYCGPLRLLAQEI 425
Query: 118 AKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
RLN +V C+L+TGQ+ V A+H A T+EMA D AVIDE QM+ RG++
Sbjct: 426 YDRLNAVDVKCNLLTGQQNLVVRDARHLACTIEMASTNRLVDVAVIDEFQMIADLGRGWA 485
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNI 237
+TRA+LG+ A E+HLCGD AV LI+++ + TGD ++V+ YERL+PL + + +
Sbjct: 486 WTRAVLGLPAREIHLCGDNTAVSLIEKLAKTTGDTIEVRYYERLAPLRVESKSVDWRRTL 545
Query: 238 QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 297
+ GDCI++FSR I K IE RG C++VYG+LPPETR QA FN+ S +DVLVA
Sbjct: 546 EKGDCIISFSRRDILETKSLIERRGLK-CAVVYGALPPETRANQAQLFNEPDSGYDVLVA 604
Query: 298 SDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357
SDAIGMGLNLNI R+IFS +KKFDG E+R L EVKQIAGRAGR+ S+FP G VT + S
Sbjct: 605 SDAIGMGLNLNIRRVIFSEIKKFDGKEMRKLVHSEVKQIAGRAGRFRSEFPEGLVTSVSS 664
Query: 358 EDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSR-LHPDSSLYG-ILEHFLENAKLSENY 415
++ + + L P+ + E AG+FP + ++R L + + +LE F E L Y
Sbjct: 665 INIGYIKEQLELPNVVTERAGIFPQEAQLEQFARHLGKEVRTFSELLERFFECTNLDNLY 724
Query: 416 FFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISS 456
F N ++ +KVA +ID + L + KY F ++P+ + + S+
Sbjct: 725 FMENTDDKIKVARLIDHIKLPVKTKYAFIMAPLKLKEKESN 765
>gi|449504697|ref|XP_002191074.2| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Taeniopygia guttata]
Length = 673
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 197/456 (43%), Positives = 291/456 (63%), Gaps = 21/456 (4%)
Query: 22 DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVIL 81
D++ PF L K I F +D + ++K +DL P WYP AR RK+I
Sbjct: 25 DDLFPFFLRHAKQI--FPMLDCM-------DDLRKI--SDLRLPPNWYPDARAIQRKIIF 73
Query: 82 HVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQER----E 137
H GPTNSGKT+ A+ R S+ SGIYCGPL+LLA E+ ++ N ANV CDL+TG+ER E
Sbjct: 74 HAGPTNSGKTYHAIQRFLSAKSGIYCGPLKLLAHEIFQKSNDANVPCDLVTGEERVFANE 133
Query: 138 EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 197
+ A H A T+EM + Y+ AVIDEIQM+ RG+++TRALLG+CA E+H+CG+PA
Sbjct: 134 DSRQAPHVACTIEMCSTNTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEIHVCGEPA 193
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
A+ L+ +++ TG++V+V++YERL+PL L+ L S N++ GDCIV FS++ IY + +
Sbjct: 194 AIDLVTELMYTTGEEVEVRNYERLTPLTVLDYALESLDNLRPGDCIVCFSKNDIYSISRQ 253
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFS-- 315
IE+RG C+++YGSLPP T+ QA +FND +LVA+DAIGMGLNL I RIIF+
Sbjct: 254 IEARGLE-CAVIYGSLPPGTKLEQAKKFNDPDDPCKILVATDAIGMGLNLCIRRIIFNSI 312
Query: 316 ---TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSP 372
T+ + E+ +T + QIAGRAGR+GS F GEVT + +DL L + L EP P
Sbjct: 313 VKPTVNEKGEKEIDSITTSQALQIAGRAGRFGSSFKQGEVTAMHRDDLARLKEILSEPVP 372
Query: 373 MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQ 432
+++AGL P + I M++ PD++L +++ F+ +++ YF N ++ +A +I
Sbjct: 373 PVQAAGLHPTPEQIEMFAYHLPDATLSNLIDIFVSLSQVDGMYFVCNIDDFKFLADMIQH 432
Query: 433 LPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+PL L +Y+FC +P++ + L +FA +S+
Sbjct: 433 IPLNLRSRYVFCTAPLNRKEPFVCTTLLKFARQFSR 468
>gi|126343373|ref|XP_001380624.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Monodelphis domestica]
Length = 777
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 188/419 (44%), Positives = 274/419 (65%), Gaps = 10/419 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP AR RK++ H GPTNSGKT+ A+ R ++ SG+YCGPL+LLA E+
Sbjct: 177 ISDLRLPPNWYPEARSLRRKIVFHAGPTNSGKTYHAIQRYLAAKSGVYCGPLKLLAHEIF 236
Query: 119 KRLNKANVSCDLITGQEREEVDG----AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N A V CDL+TG+ER D A H A TVEM V + Y+ AVIDEIQM+ R
Sbjct: 237 EKSNDAGVLCDLVTGEERVIADPNGKPAAHVACTVEMCTVTAPYEVAVIDEIQMIKDPAR 296
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+CA E+HLCG+ AA+ ++ +++ TG++V+VQ+YERL+P+ LN L S
Sbjct: 297 GWAWTRALLGLCAEEIHLCGEAAAIDIVTELMYTTGEEVEVQNYERLTPITVLNRALESL 356
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N+Q GDCIV FS++ IY + + IE+RG +++YGSLPP T+ QA +FND + +
Sbjct: 357 DNLQPGDCIVCFSKNDIYSVSRQIETRGLE-SAVIYGSLPPGTKLAQAKKFNDPNDPCKI 415
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I RIIF+++ K E+ ++ + QI+GRAGR+ SKF
Sbjct: 416 LVATDAIGMGLNLSIKRIIFNSLIKPSINEKGEKEMEPISTSQALQISGRAGRFSSKFKE 475
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
GEVT + EDL LL + L +P +E+AGL P D I M++ PD++L +++ F++ +
Sbjct: 476 GEVTTMYPEDLKLLKEILNKPVEPIEAAGLHPTADQIEMFAYHLPDTTLANLIDIFVDFS 535
Query: 410 KLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
++ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 536 QVDGQYFVCNMDDFKFSADLIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 594
>gi|348689571|gb|EGZ29385.1| hypothetical protein PHYSODRAFT_537681 [Phytophthora sojae]
Length = 649
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/428 (44%), Positives = 286/428 (66%), Gaps = 8/428 (1%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSS--GIYCGPLRLLAWE 116
TDL PH YP A R++I H GPTNSGKTHQAL RL+ + GIYCGPLRLLA E
Sbjct: 96 LTDLRLPHEMYPYATAMKRRIIYHEGPTNSGKTHQALERLKQAGEDGGIYCGPLRLLALE 155
Query: 117 VAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGF 176
+ +R+N + L+TGQE++ V + H + TVEMA++ +D AVIDEIQ++G RG+
Sbjct: 156 IYERMNSDGLYTSLVTGQEKKIVPYSTHVSCTVEMANINRPWDVAVIDEIQLIGDPQRGW 215
Query: 177 SFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSN 236
++TRAL G+ A E+H+CG AV L+++ + TGD+ +++SYER SPL L ++SN
Sbjct: 216 AWTRALFGLQAKEIHVCGSGEAVHLVKKFAETTGDEFELRSYERRSPLEISTTHLKNYSN 275
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296
I++GDC+V FSR I+++K+ IE + C I+YG LPPETR++QA FND +++F++LV
Sbjct: 276 IRSGDCVVAFSRRDIFQIKRDIEIKTGQKCCIIYGQLPPETRSQQARLFNDRNNDFNILV 335
Query: 297 ASDAIGMGLNLNISRIIFSTMKKFDGVE--LRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 354
ASDA+GMGLNLNI R++F+T+KK+ G + D+ KQIAGRAGRYGS F GE TC
Sbjct: 336 ASDAVGMGLNLNIRRVVFATVKKYSGGSGGMVDIPASLAKQIAGRAGRYGSDFASGEATC 395
Query: 355 LDSEDLPLLHKSLLE-PSPMLESAGLFPNFDLIYMYSRLHPD-SSLYGILEHFLENAKLS 412
L EDL L +S E P+P L SAGLFP+ + + +++ P + L +++ ++ A+L
Sbjct: 396 LLEEDLEYLKESYDEVPTP-LTSAGLFPSSEQMEEFAKQLPGITDLADLVDKYVMLARLD 454
Query: 413 ENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIV 472
+YF N +++ AT++ L L +++ FC+SPV + + ++ + ++A +S V
Sbjct: 455 GDYFMCNHQDMKDAATLLRDTELTLSDRFTFCMSPVSLRNPLARKVFLEYARAHSLGQSV 514
Query: 473 QLREIFTP 480
+L +I+ P
Sbjct: 515 KL-DIYLP 521
>gi|449268993|gb|EMC79805.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial, partial [Columba
livia]
Length = 588
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 196/457 (42%), Positives = 291/457 (63%), Gaps = 21/457 (4%)
Query: 22 DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVIL 81
D++ PF L K I F +D + ++K +DL P WYP AR RK+I
Sbjct: 64 DDLFPFFLRHAKQI--FPMLDCM-------DDLRKI--SDLRLPPNWYPDARAIQRKIIF 112
Query: 82 HVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQER----E 137
H GPTNSGKTH A+ R S+ SGIYCGPL+LLA E+ ++ N ANV CDL+TG+ER E
Sbjct: 113 HAGPTNSGKTHHAIQRFLSAKSGIYCGPLKLLAHEIFQKSNDANVPCDLVTGEERVYANE 172
Query: 138 EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 197
+ A H A T+EM + Y+ AVIDEIQM+ RG+++TRALLG+CA E+H+CG+PA
Sbjct: 173 DARPAPHIACTIEMCSTNTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEIHVCGEPA 232
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
A+ L+ +++ TG++V+V++Y+RL+PL L+ L S N++ GDC+V FS++ IY + +
Sbjct: 233 AIDLVTELMYTTGEEVEVRNYKRLTPLTVLDYALESLDNLRPGDCVVCFSKNDIYSVSRQ 292
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFS-- 315
IE+RG C+++YGSLPP T+ QA +FND + +LVA+DAIGMGLNL I RIIF+
Sbjct: 293 IEARGLE-CAVIYGSLPPGTKLEQAKKFNDPNDPCKILVATDAIGMGLNLCIKRIIFNSI 351
Query: 316 ---TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSP 372
T+ + E+ +T + QIAGRAGRYGS F GEVT + EDL L + L EP P
Sbjct: 352 VKPTVNEKGEKEIDSITTSQALQIAGRAGRYGSSFKQGEVTTMHREDLAQLKEILREPVP 411
Query: 373 MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQ 432
+++AGL P + I M++ PD++L +++ F+ +++ YF N ++ +A +I
Sbjct: 412 PVKAAGLHPTPEQIEMFAYHLPDATLSNLIDIFVSLSQVDGLYFVCNIDDFKFLADMIQH 471
Query: 433 LPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK 469
+PL L +Y+FC +P++ + L + + + +K
Sbjct: 472 IPLNLRSRYVFCTAPLNRKEPFVCTTLLKVSYFFLQK 508
>gi|307110287|gb|EFN58523.1| hypothetical protein CHLNCDRAFT_19567 [Chlorella variabilis]
Length = 681
Score = 373 bits (957), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/424 (45%), Positives = 271/424 (63%), Gaps = 15/424 (3%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
DL PH W+P+AR R++I H GPTNSGKT+ AL + S+ SGIYCGPLRLLA EV
Sbjct: 203 VDLRNPHQWFPVARALQRRIIYHAGPTNSGKTYNALQAMRSAQSGIYCGPLRLLAMEVYD 262
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR----- 174
N + C+LITGQER E+ GA+H A TVEM ++ D AVIDEIQM+G ++R
Sbjct: 263 TFNADGLYCNLITGQERRELPGAEHTACTVEMVNMQRRVDVAVIDEIQMIGDESRQELCC 322
Query: 175 -------GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-VP 226
G+++TRAL+G ANE+HLCGD +A+PL+++I + G+ ++V +Y+R + L V
Sbjct: 323 CPGICCRGWAWTRALMGAPANEVHLCGDGSALPLVRKICEEMGETLEVNTYDRFTTLEVE 382
Query: 227 LNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFN 286
+G +S +Q GDCIV FSR IY +K+ IE KH +VYG+LPPETR +QA FN
Sbjct: 383 PGGLVGGYSAVQPGDCIVAFSRKDIYNIKQFIEQETKHRACVVYGALPPETRRQQAKLFN 442
Query: 287 DASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346
+ + + V+VASDA+GMGLNLNI RIIF ++ K +G + ++V +KQIAGRAGR S+
Sbjct: 443 EPDNAYRVMVASDAVGMGLNLNIRRIIFHSVNKREGGKQVPVSVSMIKQIAGRAGRRSSQ 502
Query: 347 FPVGEVTCLDSEDLPLLHKSLLEPSPML--ESAGLFPNFDLIYMYSRLHPDSSLYGILEH 404
+P G TCL+ D+P L +++ P L +AGLFP F+ +++ PD +L
Sbjct: 503 WPKGLATCLNPTDVPRLQEAIDVPLDQLVTPTAGLFPEFEHFEVFAGQRPDEPYSSLLGA 562
Query: 405 FLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFAT 464
F A L +YFF + V++ A ++ +L L + + + FC++P +D + L FAT
Sbjct: 563 FEREALLDSSYFFCKQDSVVQAAQLLGELGLSVKDMFSFCMAPASASDLRLAAALLHFAT 622
Query: 465 NYSK 468
YSK
Sbjct: 623 KYSK 626
>gi|413918547|gb|AFW58479.1| hypothetical protein ZEAMMB73_533569 [Zea mays]
gi|413918551|gb|AFW58483.1| hypothetical protein ZEAMMB73_201464 [Zea mays]
gi|413918555|gb|AFW58487.1| hypothetical protein ZEAMMB73_960257 [Zea mays]
Length = 511
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/416 (45%), Positives = 261/416 (62%), Gaps = 3/416 (0%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DLT P TWYP AR R+V+ H GPTNSGKTH AL+ ++ SG+YC PLRLLA E+ +
Sbjct: 17 DLTAPQTWYPSARAMRRRVVYHCGPTNSGKTHNALASFSAAKSGVYCSPLRLLAMEIFDK 76
Query: 121 LNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTR 180
+N VSC L TGQE +EV A H A T+EM Y+ AV+DE+QM+ RG ++TR
Sbjct: 77 VNATGVSCSLRTGQEVKEVAFASHLACTIEMVSTEEIYEVAVVDEVQMMADPVRGSAWTR 136
Query: 181 ALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-VPLNVPLGSFSNIQT 239
ALLG+ A E+HLCGD + + +I++I TGDD+ V YER PL V N G F NI++
Sbjct: 137 ALLGLRAEEIHLCGDDSVLSVIRKICADTGDDLLVHQYERFKPLVVEENTLRGYFQNIRS 196
Query: 240 GDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD 299
GD +V FSR I+ +K AIE+ H C ++YG+LPPETR +QA FN +E+DVLVA+D
Sbjct: 197 GDWVVAFSRKKIFEIKLAIETYTHHKCCVIYGALPPETRRQQAELFNQEHNEYDVLVATD 256
Query: 300 AIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359
A+GMGLNLNI R++F T+ K+DG + + VKQIAGRAGR GS +P G T D
Sbjct: 257 AVGMGLNLNIRRVVFYTLIKYDGEKTASVPASLVKQIAGRAGRRGSAYPHGLATTFKY-D 315
Query: 360 LPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFAN 419
L L + L EP E GLFP F+ + M++ P+ + +L + ++ + YF
Sbjct: 316 LCYLTRCLEEPLEEAEKVGLFPTFEQLEMFASQFPELTFNNLLNKLCDTCRIDDTYFICQ 375
Query: 420 CEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQL 474
+ + KVA +++ + L L +Y FC++PV+ + + L +FA NYS+ V +
Sbjct: 376 HDNMKKVADMLEGVHGLSLKSRYGFCLAPVNTRNSEAMDHLLRFANNYSESHYVTM 431
>gi|432852834|ref|XP_004067408.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Oryzias latipes]
Length = 779
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 182/418 (43%), Positives = 276/418 (66%), Gaps = 10/418 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RKVI H GPTNSGKT+ A+ R ++ SG+YCGPL+LLA E+ +
Sbjct: 183 SDLRVPANWYPEARAIQRKVIFHAGPTNSGKTYHAIQRYLAAKSGVYCGPLKLLAHEIFE 242
Query: 120 RLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG+ER +D A H A T+EM V + Y+ AVIDEIQM+ +RG
Sbjct: 243 KSNNAGVPCDLVTGEERTFMDMDGRAAGHVACTIEMCSVTTPYEVAVIDEIQMIRDPSRG 302
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA+E+H+CG+PAAV I++++ TG++V+V +Y+RL+P LN + S
Sbjct: 303 WAWTRALLGLCADEIHVCGEPAAVDFIRELMYTTGEEVEVHTYQRLTPFSILNHAVESLD 362
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE++G C+++YGSLPP T+ QA +FND ++L
Sbjct: 363 NLRPGDCIVCFSKNDIYSISRQIEAKGLE-CAVIYGSLPPGTKLSQAKKFNDPDDPCNIL 421
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVE-----LRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF+++ K + E + ++ + QIAGRAGR+ SKF G
Sbjct: 422 VATDAIGMGLNLSIKRIIFNSLVKPNVNEKGEKQMETISTSQALQIAGRAGRFSSKFKEG 481
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT + +DLP+L + L +E+AGL P + I M++ PD++L +++ F+ ++
Sbjct: 482 EVTTMHRDDLPVLKEILSHAVDPIETAGLHPTAEQIEMFAYHLPDATLSNLIDIFVSLSQ 541
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N ++ +A +I +PL L +Y+FC +P++ +FA +S+
Sbjct: 542 VDGLYFVCNIDDFKFLADMIQHIPLNLRSRYVFCTAPINKKQSFVCTSFLKFARQFSR 599
>gi|452824358|gb|EME31361.1| ATP-dependent RNA helicase (mitochondrial) [Galdieria sulphuraria]
Length = 700
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 185/421 (43%), Positives = 268/421 (63%), Gaps = 7/421 (1%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D + P WYPLAR+ R++ILH+GPTNSGKTH AL L ++ SGIYCGPLRLLAWE+ +R
Sbjct: 195 DFSHPEDWYPLAREIKRRIILHIGPTNSGKTHAALEALRAAQSGIYCGPLRLLAWEIHER 254
Query: 121 LNKAN-----VSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
LNK + V CDL+TGQE+ ++ A+H + T+EMA V + VIDEIQ+LG R
Sbjct: 255 LNKGDESHQCVPCDLLTGQEQTDIPDAQHISCTIEMAPVHRRFQVGVIDEIQLLGDNERA 314
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+ ELHLCGDP++ ++++++ T D + VQ YERLS L L S
Sbjct: 315 WAWTRALLGLAVEELHLCGDPSSENIVRKLINRTQDSLSVQYYERLSSLTVEEDRLTSLQ 374
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
+Q GDC+V FS+ +++ K IE CS++YG LPPE R +Q+ FN ++ +L
Sbjct: 375 QLQAGDCLVAFSKADLFKWKVDIERETGLKCSVIYGGLPPEVRRQQSMLFNHSNRSDRIL 434
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 355
VA+DAIGMGLNLNI R+IFS++ KFDG E+ L+ +V+QI GRAGR+GS FP G +T +
Sbjct: 435 VATDAIGMGLNLNIRRVIFSSLLKFDGKEVCSLSPSQVRQIGGRAGRFGSLFPDGLITAV 494
Query: 356 DSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS--RLHPDSSLYGILEHFLENAKLSE 413
+ EDL + ++ + + AGLFP+ D + +++ + SS I + A++
Sbjct: 495 NQEDLEYIRETFSKKLAPVPQAGLFPSADKVQLFAEEKAASRSSFSMIWDEMANLARVDG 554
Query: 414 NYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQ 473
+F + ++V A VI+ LPL + KY C+ PVDM S +F+ + +G V+
Sbjct: 555 TFFLCSFDDVKARAQVIEDLPLSIETKYTLCMCPVDMGIPKQSVAFAEFSRELAFEGCVR 614
Query: 474 L 474
L
Sbjct: 615 L 615
>gi|57529853|ref|NP_001006498.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial precursor [Gallus
gallus]
gi|82233802|sp|Q5ZJT0.1|SUV3_CHICK RecName: Full=ATP-dependent RNA helicase SUPV3L1, mitochondrial;
AltName: Full=Suppressor of var1 3-like protein 1;
Short=SUV3-like protein 1; Flags: Precursor
gi|53133368|emb|CAG32013.1| hypothetical protein RCJMB04_16a1 [Gallus gallus]
Length = 794
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/456 (42%), Positives = 290/456 (63%), Gaps = 21/456 (4%)
Query: 22 DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVIL 81
D++ PF L K I F +D + ++K +DL P WYP AR RK+I
Sbjct: 144 DDLFPFFLRHAKQI--FPMLDCM-------DDLRKI--SDLRLPPNWYPEARAIQRKIIF 192
Query: 82 HVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQER----E 137
H GPTNSGKT+ A+ R S+ SGIYCGPL+LLA E+ ++ N ANV CDL+TG+ER E
Sbjct: 193 HAGPTNSGKTYHAIQRFLSAKSGIYCGPLKLLAHEIFQKSNAANVPCDLVTGEERVYASE 252
Query: 138 EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 197
+ A H A T+EM + Y+ AVIDEIQM+ RG+++TRALLG+CA E+H+CG+ A
Sbjct: 253 DAKQASHIACTIEMCSTNTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEIHVCGEGA 312
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
A+ L+ +++ TG++V+V++Y+RL+PL L+ L S N+Q GDCIV FS++ IY + +
Sbjct: 313 AIDLVTELMYTTGEEVEVRNYKRLTPLTVLDYALESLDNLQPGDCIVCFSKNDIYSVSRQ 372
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFS-- 315
IE+RG C+++YGSLPP T+ QA +FND + +LVA+DAIGMGLNL I RIIF+
Sbjct: 373 IEARGLE-CAVIYGSLPPGTKLEQAKKFNDPNDPCKILVATDAIGMGLNLCIKRIIFNSI 431
Query: 316 ---TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSP 372
T+ + E+ +T + QIAGRAGR+GS F GEVT + +DL L + L E P
Sbjct: 432 VKPTVNEKGEKEIDSITTSQALQIAGRAGRFGSSFKQGEVTAMHRDDLLQLKEILSEAVP 491
Query: 373 MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQ 432
+++AGL P + I M++ PD++L +++ F+ +++ YF N ++ +A +I
Sbjct: 492 PVKAAGLHPTPEQIEMFAYHLPDATLSNLIDIFVSLSQVDGLYFVCNIDDFKFLADMIQH 551
Query: 433 LPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+PL L +Y+FC +P++ + L +FA +S+
Sbjct: 552 IPLNLRSRYVFCTAPLNRKEPFVCTTLLKFARQFSR 587
>gi|326923432|ref|XP_003207940.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Meleagris gallopavo]
Length = 717
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/456 (42%), Positives = 290/456 (63%), Gaps = 21/456 (4%)
Query: 22 DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVIL 81
D++ PF L K I F +D + ++K +DL P WYP AR RK+I
Sbjct: 67 DDLFPFFLRHAKQI--FPMLDCM-------DDLRKI--SDLRLPPNWYPEARAIQRKIIF 115
Query: 82 HVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQER----E 137
H GPTNSGKT+ A+ R S+ SGIYCGPL+LLA E+ ++ N ANV CDL+TG+ER E
Sbjct: 116 HAGPTNSGKTYHAIQRFLSAKSGIYCGPLKLLAHEIFQKSNAANVPCDLVTGEERVYATE 175
Query: 138 EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 197
+ A H A T+EM + Y+ AVIDEIQM+ RG+++TRALLG+CA E+H+CG+ A
Sbjct: 176 DARQASHIACTIEMCSTNTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEIHVCGEGA 235
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
A+ L+ +++ TG++V+V++Y+RL+PL L+ L S N+Q GDCIV FS++ IY + +
Sbjct: 236 AIDLVTELMYTTGEEVEVRNYKRLTPLTVLDYALESLDNLQPGDCIVCFSKNDIYSVSRQ 295
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFS-- 315
IE+RG C+++YGSLPP T+ QA +FND + +LVA+DAIGMGLNL I RIIF+
Sbjct: 296 IEARGLE-CAVIYGSLPPGTKLEQAKKFNDPNDPCKILVATDAIGMGLNLCIKRIIFNSI 354
Query: 316 ---TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSP 372
T+ + E+ +T + QIAGRAGR+GS F GEVT + +DL L + L E P
Sbjct: 355 VKPTVNEKGEKEIDSITTSQALQIAGRAGRFGSSFKQGEVTTMHRDDLLQLKEILSESVP 414
Query: 373 MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQ 432
+++AGL P + I M++ PD++L +++ F+ +++ YF N ++ +A +I
Sbjct: 415 PVKAAGLHPTPEQIEMFAYHLPDATLSNLIDIFVSLSQVDGLYFVCNIDDFKFLADMIQH 474
Query: 433 LPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+PL L +Y+FC +P++ + L +FA +S+
Sbjct: 475 IPLNLRSRYVFCTAPLNRKEPFVCTTLLKFARQFSR 510
>gi|328771880|gb|EGF81919.1| hypothetical protein BATDEDRAFT_10090, partial [Batrachochytrium
dendrobatidis JAM81]
Length = 454
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 178/409 (43%), Positives = 269/409 (65%), Gaps = 1/409 (0%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P YP AR RK+I+H+GPTNSGKT+ AL R ++ S IYCGPLRLLA EV +
Sbjct: 1 SDLRTPAELYPQARAMKRKIIMHIGPTNSGKTYAALERYKAVDSAIYCGPLRLLAQEVYQ 60
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
R+N A ++C+L+TG+ER DG + TVEMA V ++D AV+DEIQ++G + RG+++T
Sbjct: 61 RMNAAGIACNLLTGEERRVSDGVDKWSCTVEMALVNREFDVAVVDEIQLIGDQQRGWAWT 120
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSNIQ 238
ALL + A E+HLCG+ + +++++ + TGD +++ YERL+ L L G+F+ I+
Sbjct: 121 HALLALQAKEVHLCGEGTTLDIVRKLCKTTGDTLEINEYERLTSLTVAQKSLEGNFNQIK 180
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
GD I+ FSR ++ K+ +E + +I+YG LPPE+R QA FND S+ VLVAS
Sbjct: 181 PGDAIIAFSRKNVFNAKQFVELNTPYKAAIIYGGLPPESRADQAKLFNDPESDRQVLVAS 240
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358
DAIGMGLNLNI RI+F TM+KF+G ++ LTV + KQIAGRAGR+G+++ G+VTCL+++
Sbjct: 241 DAIGMGLNLNIRRIVFYTMQKFNGTKIIPLTVSQTKQIAGRAGRFGTQWENGQVTCLETK 300
Query: 359 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFA 418
D+ LLH S+ +P + S G+ P + + +S P+ + +L+ F + A+L NYF
Sbjct: 301 DMALLHASMKMTAPRIMSVGITPTVEQVEQFSNSLPNDTYATLLDKFEDLAQLDGNYFMC 360
Query: 419 NCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYS 467
N + +A +I +PL + ++Y F SP + + + +FA +S
Sbjct: 361 NLDHHRAIAKLIQTIPLNIRDRYHFVQSPCNPEEPFIKAAIVKFARAHS 409
>gi|149038689|gb|EDL92978.1| suppressor of var1, 3-like 1 (S. cerevisiae) [Rattus norvegicus]
Length = 632
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/419 (45%), Positives = 273/419 (65%), Gaps = 10/419 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL RP WYP AR RK+I H GPTNSGKT+ A+ R S++SG+YCGPL+LLA E+
Sbjct: 38 ISDLRRPPNWYPEARAIQRKIIFHSGPTNSGKTYHAIQRYLSATSGVYCGPLKLLAHEIF 97
Query: 119 KRLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N A V CDL+TG+ER V+ A H + TVEM +V + Y+ AVIDEIQM+ R
Sbjct: 98 EKSNAAGVPCDLVTGEERLTVEPEGKQATHVSCTVEMCNVATPYEVAVIDEIQMIRDPAR 157
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+CA E+HLCG+ AA+ L+ ++L TG++V+VQ YERL+P+ L+ L S
Sbjct: 158 GWAWTRALLGLCAEEVHLCGESAAIDLVTELLYTTGEEVEVQKYERLTPISVLDRALESL 217
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND + +
Sbjct: 218 DNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQARKFNDPNDPCKI 276
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I RIIF ++ K EL +T + QIAGRAGR+ S F
Sbjct: 277 LVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKELEPITTSQALQIAGRAGRFSSHFKE 336
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
GEVT + +DL LL + L P +++AGL P + I M++ P+++L +++ F++ A
Sbjct: 337 GEVTTMHRDDLALLKEILNRPVDPIQAAGLHPTAEQIEMFAYHLPETTLSNLIDIFVDFA 396
Query: 410 KLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
++ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 397 QVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 455
>gi|60223057|ref|NP_001012480.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial precursor [Rattus
norvegicus]
gi|81909565|sp|Q5EBA1.1|SUV3_RAT RecName: Full=ATP-dependent RNA helicase SUPV3L1, mitochondrial;
AltName: Full=Suppressor of var1 3-like protein 1;
Short=SUV3-like protein 1; Flags: Precursor
gi|59808213|gb|AAH89883.1| Suppressor of var1, 3-like 1 (S. cerevisiae) [Rattus norvegicus]
Length = 776
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 189/418 (45%), Positives = 273/418 (65%), Gaps = 10/418 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL RP WYP AR RK+I H GPTNSGKT+ A+ R S++SG+YCGPL+LLA E+ +
Sbjct: 183 SDLRRPPNWYPEARAIQRKIIFHSGPTNSGKTYHAIQRYLSATSGVYCGPLKLLAHEIFE 242
Query: 120 RLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG+ER V+ A H + TVEM +V + Y+ AVIDEIQM+ RG
Sbjct: 243 KSNAAGVPCDLVTGEERLTVEPEGKQATHVSCTVEMCNVATPYEVAVIDEIQMIRDPARG 302
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+HLCG+ AA+ L+ ++L TG++V+VQ YERL+P+ L+ L S
Sbjct: 303 WAWTRALLGLCAEEVHLCGESAAIDLVTELLYTTGEEVEVQKYERLTPISVLDRALESLD 362
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND + +L
Sbjct: 363 NLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQARKFNDPNDPCKIL 421
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF ++ K EL +T + QIAGRAGR+ S F G
Sbjct: 422 VATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKELEPITTSQALQIAGRAGRFSSHFKEG 481
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT + +DL LL + L P +++AGL P + I M++ P+++L +++ F++ A+
Sbjct: 482 EVTTMHRDDLALLKEILNRPVDPIQAAGLHPTAEQIEMFAYHLPETTLSNLIDIFVDFAQ 541
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 542 VDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 599
>gi|348575908|ref|XP_003473730.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Cavia porcellus]
Length = 786
Score = 370 bits (950), Expect = e-99, Method: Compositional matrix adjust.
Identities = 189/419 (45%), Positives = 271/419 (64%), Gaps = 10/419 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+
Sbjct: 182 ISDLRIPPNWYPEARAIQRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYCGPLKLLAHEIF 241
Query: 119 KRLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N A V CDL+TG+ER V+ A H + TVEM V + Y+ AVIDEIQM+ R
Sbjct: 242 EKSNAAGVPCDLVTGEERVTVEPNGKQAAHVSCTVEMCSVTTPYEVAVIDEIQMIRDPAR 301
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+CA E+HLCG+ AA+ L+ +++ TG++V+V+ Y+RL+P+ LN L S
Sbjct: 302 GWAWTRALLGLCAEEIHLCGESAAIDLVTELMYTTGEEVEVRKYKRLTPISVLNHALESL 361
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA RFND S +
Sbjct: 362 DNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKRFNDPSDPCKI 420
Query: 295 LVASDAIGMGLNLNISRIIF-----STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I RIIF T+ + E+ +T + QIAGRAGR+ S+F
Sbjct: 421 LVATDAIGMGLNLSIKRIIFYSLLKPTVNEKGEKEIEPITTSQALQIAGRAGRFSSQFKE 480
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
GEVT ++ EDL LL + L P ++SAGL P + I M++ PD++L +++ F++ +
Sbjct: 481 GEVTTMNREDLDLLKEILNRPVDPIKSAGLHPTAEQIEMFAYHLPDTTLSNLIDIFVDFS 540
Query: 410 KLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
++ NYF N + A +I +PL L +Y+FC +P+ L QFA YS+
Sbjct: 541 QVDGNYFVCNMADFKFSAELIQHIPLSLRVRYVFCTAPISKKQPFVCSSLLQFARQYSR 599
>gi|218194975|gb|EEC77402.1| hypothetical protein OsI_16164 [Oryza sativa Indica Group]
Length = 465
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 176/375 (46%), Positives = 248/375 (66%), Gaps = 1/375 (0%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
DLT PH WYP AR R+V+ H GPTNSGKTH AL+R ++ SG+YC PLRLLA EV
Sbjct: 76 ADLTAPHAWYPFARAMPRRVVYHCGPTNSGKTHNALTRFAAAKSGVYCSPLRLLAMEVFD 135
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
++N V C L TGQE +EV + H A T+EM Y+ AV+DEIQM+ RG+++T
Sbjct: 136 KVNALGVYCSLRTGQEIKEVPFSNHVACTIEMLSTEEPYEVAVVDEIQMMADPVRGYAWT 195
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-VPLNVPLGSFSNIQ 238
RA+LG+ A+E+HLCGDP+ + ++++I TGDD++V YER PL V LG N++
Sbjct: 196 RAVLGLKADEIHLCGDPSVLKIVRKICADTGDDLEVHQYERFKPLVVEAKTLLGDLKNVR 255
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
+GDCIV FSR I+ +K AIE KH C ++YG+LPPETR +QA FN+ +E+DVLVAS
Sbjct: 256 SGDCIVAFSRREIFEVKLAIEKFTKHKCCVIYGALPPETRRQQAKLFNEQDNEYDVLVAS 315
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358
DA+GMGLNLNI R++F ++ K++G + + +VKQIAGRAGR GS +P G T +
Sbjct: 316 DAVGMGLNLNIRRVVFYSLAKYNGDRMVPVAASQVKQIAGRAGRRGSIYPDGLTTTFLLD 375
Query: 359 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFA 418
DL L + L +P + GLFP F+ + ++ PD + +L+ F EN ++ YF
Sbjct: 376 DLDYLIQCLQQPFEEAKKVGLFPCFEQVESFAIQFPDLTFNELLDKFRENCRVDSTYFMC 435
Query: 419 NCEEVLKVATVIDQL 433
+ E + KVA +++++
Sbjct: 436 HQESIKKVANMLERI 450
>gi|440896794|gb|ELR48623.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial [Bos grunniens
mutus]
Length = 789
Score = 369 bits (948), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 187/419 (44%), Positives = 272/419 (64%), Gaps = 10/419 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+
Sbjct: 185 ISDLRIPPNWYPEARAIHRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYCGPLKLLAHEIF 244
Query: 119 KRLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N A V CDL+TG+ER VD A H A TVEM V + Y+ AVIDEIQM+ R
Sbjct: 245 EKSNAAGVPCDLVTGEERVSVDPDGKQAAHVACTVEMCSVTTPYEVAVIDEIQMIKDPAR 304
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+CA E+HLCG+ AA+ ++ +++ TG+DV+V++Y+RL+P+ L+ L S
Sbjct: 305 GWAWTRALLGLCAEEIHLCGESAAIDMVTELMYTTGEDVEVRTYKRLTPISVLDHALESL 364
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND +
Sbjct: 365 DNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPDDPCKI 423
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I RIIF ++ K E+ +T + QIAGRAGR+ SKF
Sbjct: 424 LVATDAIGMGLNLSIRRIIFYSLMKPSINEKGEKEIEPITTSQALQIAGRAGRFSSKFKE 483
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
GEVT ++ EDL LL + L P +++AGL P + I M++ PD++L +++ F++ +
Sbjct: 484 GEVTTMNREDLSLLKEILNRPVDPIKAAGLHPTAEQIEMFAYHLPDTTLSNLIDIFVDFS 543
Query: 410 KLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
++ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 544 QVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 602
>gi|426255672|ref|XP_004021472.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase SUPV3L1,
mitochondrial [Ovis aries]
Length = 787
Score = 369 bits (948), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 188/419 (44%), Positives = 272/419 (64%), Gaps = 10/419 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+
Sbjct: 183 ISDLRIPPNWYPEARAIHRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYCGPLKLLAHEIF 242
Query: 119 KRLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N A V CDL+TG+ER VD A H A TVEM V + Y+ AVIDEIQM+ R
Sbjct: 243 EKSNAAGVPCDLVTGEERVTVDPDGKQAAHVACTVEMCSVTTPYEVAVIDEIQMIKDPAR 302
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+CA E+HLCG+ AA+ L+ +++ TG+DV+V++Y+RL+P+ L+ L S
Sbjct: 303 GWAWTRALLGLCAEEIHLCGESAAIDLVTELMYTTGEDVEVRTYKRLTPISVLDHALESL 362
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND +
Sbjct: 363 DNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPDDPCKI 421
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I RIIF ++ K E+ +T + QIAGRAGR+ SKF
Sbjct: 422 LVATDAIGMGLNLSIRRIIFYSLMKPSINEKGEKEIEPITTSQALQIAGRAGRFSSKFKE 481
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
GEVT ++ EDL LL + L P +++AGL P + I M++ PD++L +++ F++ +
Sbjct: 482 GEVTTMNREDLSLLKEILNRPVDPIKAAGLHPTAEQIEMFAYHLPDTTLSNLIDIFVDFS 541
Query: 410 KLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
++ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 542 QVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 600
>gi|31088872|ref|NP_852088.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial precursor [Mus
musculus]
gi|81912937|sp|Q80YD1.1|SUV3_MOUSE RecName: Full=ATP-dependent RNA helicase SUPV3L1, mitochondrial;
AltName: Full=Suppressor of var1 3-like protein 1;
Short=SUV3-like protein 1; Flags: Precursor
gi|29612530|gb|AAH49796.1| Suppressor of var1, 3-like 1 (S. cerevisiae) [Mus musculus]
gi|148700153|gb|EDL32100.1| suppressor of var1, 3-like 1 (S. cerevisiae), isoform CRA_a [Mus
musculus]
Length = 779
Score = 369 bits (946), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 188/419 (44%), Positives = 272/419 (64%), Gaps = 10/419 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP AR + RK+I H GPTNSGKT+ A+ R S++SG+YCGPL+LLA E+
Sbjct: 182 ISDLRIPPNWYPEARARQRKIIFHSGPTNSGKTYHAIQRYLSATSGVYCGPLKLLAHEIF 241
Query: 119 KRLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N A V CDL+TG+ER V+ A H + TVEM +V + Y+ AVIDEIQM+ R
Sbjct: 242 EKSNAAGVPCDLVTGEERLTVEPEGKQATHVSCTVEMCNVATPYEVAVIDEIQMIRDPAR 301
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+CA E+HLCG+ AA+ L+ ++L TG++V+VQ YERL+P+ L+ L S
Sbjct: 302 GWAWTRALLGLCAEEVHLCGESAAINLVSELLYTTGEEVEVQKYERLTPISVLDHALESL 361
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N+Q GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND + +
Sbjct: 362 DNLQPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQARKFNDPNDPCKI 420
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I RIIF ++ K EL +T + QIAGRAGR+ S F
Sbjct: 421 LVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKELEPITTSQALQIAGRAGRFSSHFKE 480
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
G+VT + +DL LL L P +++AGL P + I M++ P+++L +++ F++ A
Sbjct: 481 GQVTTMHRDDLALLKDILNRPVDPIQAAGLHPTAEQIEMFAYHLPETTLSNLIDIFVDFA 540
Query: 410 KLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
++ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 541 QVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 599
>gi|296220503|ref|XP_002756336.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Callithrix jacchus]
Length = 786
Score = 369 bits (946), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 189/418 (45%), Positives = 272/418 (65%), Gaps = 10/418 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+ +
Sbjct: 184 SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE 243
Query: 120 RLNKANVSCDLITGQEREEV--DG--AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG+ER V DG A H A TVEM V + Y+ AVIDEIQM+ RG
Sbjct: 244 KSNAAGVPCDLVTGEERVTVQPDGKQASHVACTVEMCSVTTPYEVAVIDEIQMIRDPARG 303
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG++V+VQ Y+RL+P+ L+ L S
Sbjct: 304 WAWTRALLGLCAEEIHLCGEPAAIDLVTELMFTTGEEVEVQDYKRLTPISVLDRALESLD 363
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND +L
Sbjct: 364 NLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPDDPCKIL 422
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF ++ K E+ +T + QIAGRAGR+ S+F G
Sbjct: 423 VATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKEIEPITTSQALQIAGRAGRFSSQFKEG 482
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT ++ EDL LL + L P + +AGL P + I M++ PD++L +++ F++ ++
Sbjct: 483 EVTTMNREDLSLLKEILNRPVDPIRAAGLHPTAEQIEMFAYHLPDTTLSNLIDIFVDFSQ 542
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 543 VDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 600
>gi|63087685|emb|CAI92124.1| SUV3L1 protein [Mus musculus]
Length = 779
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 188/418 (44%), Positives = 272/418 (65%), Gaps = 10/418 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR + RK+I H GPTNSGKT+ A+ R S++SG+YCGPL+LLA E+ +
Sbjct: 183 SDLRIPPNWYPEARARQRKIIFHSGPTNSGKTYHAIQRYLSATSGVYCGPLKLLAHEIFE 242
Query: 120 RLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG+ER V+ A H + TVEM +V + Y+ AVIDEIQM+ RG
Sbjct: 243 KSNAAGVPCDLVTGEERLTVEPEGKQATHVSCTVEMCNVATPYEVAVIDEIQMIRDPARG 302
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+HLCG+ AA+ L+ ++L TG++V+VQ YERL+P+ L+ L S
Sbjct: 303 WAWTRALLGLCAEEVHLCGESAAINLVSELLYTTGEEVEVQKYERLTPISVLDHALESLD 362
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N+Q GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND + +L
Sbjct: 363 NLQPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQARKFNDPNDPCKIL 421
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF ++ K EL +T + QIAGRAGR+ S F G
Sbjct: 422 VATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKELEPITTSQALQIAGRAGRFSSHFKEG 481
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
+VT + +DL LL L P +++AGL P + I M++ P+++L +++ F++ A+
Sbjct: 482 QVTTMHRDDLALLKDILNRPVDPIQAAGLHPTAEQIEMFAYHLPETTLSNLIDIFVDFAQ 541
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 542 VDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 599
>gi|355722682|gb|AES07652.1| suppressor of var1, 3-like 1 [Mustela putorius furo]
Length = 764
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 189/419 (45%), Positives = 273/419 (65%), Gaps = 10/419 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+
Sbjct: 161 ISDLRIPPNWYPEARAIQRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYCGPLKLLAHEIF 220
Query: 119 KRLNKANVSCDLITGQERE--EVDG--AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N A V CDL+TG+ER E DG A H A TVEM V + YD AVIDEIQM+ R
Sbjct: 221 EKSNAAGVPCDLVTGEERVAIEPDGKQAAHVACTVEMCSVTTPYDVAVIDEIQMIRDPGR 280
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+CA E+HLCG+ AA+ L+ +++ TG++V+V++YERL+P+ L+ L S
Sbjct: 281 GWAWTRALLGLCAEEIHLCGESAAIDLVTELMYTTGEEVEVRNYERLTPISVLDHALESL 340
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND +
Sbjct: 341 DNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPDDPCKI 399
Query: 295 LVASDAIGMGLNLNISRIIF-----STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I RIIF T+ + E+ +T + QIAGRAGR+ SK+
Sbjct: 400 LVATDAIGMGLNLSIRRIIFYSLIKPTINEKGEREIEPITTSQALQIAGRAGRFSSKYKE 459
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
GEVT ++ EDL LL + L P +++AGL P + I M++ PD++L +++ F++ +
Sbjct: 460 GEVTTMNREDLSLLKEILNRPVDPIKAAGLHPTAEQIEMFAYHLPDTTLSNLIDIFVDFS 519
Query: 410 KLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
++ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 520 QVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 578
>gi|428184255|gb|EKX53111.1| hypothetical protein GUITHDRAFT_84578 [Guillardia theta CCMP2712]
Length = 548
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 204/440 (46%), Positives = 277/440 (62%), Gaps = 19/440 (4%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
TDL PH WYPLARK R+ +LH+GPTNSGKT +AL RL S SG YCGPLRLLAWEV
Sbjct: 8 LTDLRSPHLWYPLARKMKRRWVLHIGPTNSGKTFEALQRLASVESGRYCGPLRLLAWEVY 67
Query: 119 KRLNK-ANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
+L A V C L+TGQE+ A H + TVEMAD+ D AVIDE+QML RG++
Sbjct: 68 DKLKTGAPVRCSLMTGQEKVFDPKANHTSSTVEMADLDKVIDVAVIDEVQMLESNDRGWA 127
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSN 236
+TRALLG+ A E+HLCG+P A LI ++ + D+++V+ YERLS L N L GS N
Sbjct: 128 WTRALLGLPAAEIHLCGEPRAQELITKLCDLCEDELEVKEYERLSSLSVANHSLEGSLRN 187
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASS-----E 291
IQ GDCIV F R I++LK+ IE++ C +VYGSLPP TR QA FN+ S
Sbjct: 188 IQRGDCIVAFGRSKIHQLKRDIEAKTPFRCCVVYGSLPPLTRQEQAKLFNERGSFPNGQS 247
Query: 292 FDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGE 351
FDVLVASDAIGMGLNL ISR++FS+++KFDG E R LT E++QI GRAGR+G+ G
Sbjct: 248 FDVLVASDAIGMGLNLEISRVVFSSLRKFDGQEERLLTASEIRQIGGRAGRFGTNTVEGI 307
Query: 352 VTCLDSEDLPLLHKSLLEPSPMLESAGLFPNF----DLIYMYSRLHP-----DS-SLYGI 401
VT L ++DLPLL +S P + A L P D ++ + P DS SL
Sbjct: 308 VTSLHNKDLPLLKRSFKTELPQIAKACLRPEIVMLEDFVHSIRHVWPREEGEDSLSLDTA 367
Query: 402 LEHFLENAKLSENYFFANC-EEVLKVATVIDQLPLRLHEKYLFCISPVDMN-DDISSQGL 459
L+ F + + ++F +E+ +A I+ + + L +++ FC++P+D++ +D
Sbjct: 368 LQLFKDFHQTESSFFLGTTIDELRDLAKTIESVKMPLTDRFSFCLAPIDLSKEDRRRAAF 427
Query: 460 TQFATNYSKKGIVQLREIFT 479
+ A YS+K +V++ ++ T
Sbjct: 428 YEMARMYSEKRLVRISQVAT 447
>gi|194042314|ref|XP_001928933.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial [Sus
scrofa]
Length = 789
Score = 367 bits (943), Expect = 5e-99, Method: Compositional matrix adjust.
Identities = 189/419 (45%), Positives = 272/419 (64%), Gaps = 10/419 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+
Sbjct: 185 ISDLRIPPNWYPEARAIQRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYCGPLKLLAHEIF 244
Query: 119 KRLNKANVSCDLITGQEREEV--DG--AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N A V CDL+TG+ER V DG A H A TVEM V + Y+ AVIDEIQM+ R
Sbjct: 245 EKSNAAGVPCDLVTGEERVTVEPDGKQAAHVACTVEMCSVTTPYEVAVIDEIQMIKDPAR 304
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+CA E+HLCG+ AA+ L+ +++ TG+DV+V++Y+RL+P+ L+ L S
Sbjct: 305 GWAWTRALLGLCAKEIHLCGESAAIDLVTELMYTTGEDVEVRTYKRLTPISVLDHALESL 364
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND +
Sbjct: 365 DNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPDDPCKI 423
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I RIIF ++ K E+ +T + QIAGRAGR+ SKF
Sbjct: 424 LVATDAIGMGLNLSIRRIIFYSLMKPSINEKGEREIEPITTSQALQIAGRAGRFSSKFKE 483
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
GEVT + EDL LL + L P +++AGL P + I M++ PD++L +++ F++ +
Sbjct: 484 GEVTTMHREDLNLLKEILSRPVDPIKAAGLHPTAEQIEMFAYHLPDTTLSNLIDIFVDFS 543
Query: 410 KLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
++ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 544 QVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 602
>gi|355562538|gb|EHH19132.1| hypothetical protein EGK_19777 [Macaca mulatta]
gi|355782877|gb|EHH64798.1| hypothetical protein EGM_18109 [Macaca fascicularis]
Length = 789
Score = 367 bits (943), Expect = 6e-99, Method: Compositional matrix adjust.
Identities = 188/418 (44%), Positives = 273/418 (65%), Gaps = 10/418 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+ +
Sbjct: 186 SDLRIPPNWYPDARAVQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE 245
Query: 120 RLNKANVSCDLITGQEREEV--DG--AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG+ER V DG A H + TVEM V + Y+ AVIDEIQM+ RG
Sbjct: 246 KSNAAGVPCDLVTGEERVTVHPDGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARG 305
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG++V+V+ Y+RL+P+ L+ L S
Sbjct: 306 WAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLD 365
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND + +L
Sbjct: 366 NLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPNDPCKIL 424
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF ++ K EL +T + QIAGRAGR+ S+F G
Sbjct: 425 VATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKELEPITTSQALQIAGRAGRFSSQFKEG 484
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT ++ EDL LL + L P + +AGL P + I M++ PD++L +++ F++ ++
Sbjct: 485 EVTTMNHEDLSLLKEILKRPVDPITAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQ 544
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 545 VDGQYFVCNMDDFKFSAELIQHIPLSLRVRYIFCTAPINKKQPFVCSSLLQFARQYSR 602
>gi|109089488|ref|XP_001110593.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Macaca mulatta]
Length = 787
Score = 367 bits (941), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 188/418 (44%), Positives = 273/418 (65%), Gaps = 10/418 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+ +
Sbjct: 184 SDLRIPPNWYPDARAVQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE 243
Query: 120 RLNKANVSCDLITGQEREEV--DG--AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG+ER V DG A H + TVEM V + Y+ AVIDEIQM+ RG
Sbjct: 244 KSNAAGVPCDLVTGEERVTVHPDGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARG 303
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG++V+V+ Y+RL+P+ L+ L S
Sbjct: 304 WAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLD 363
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND + +L
Sbjct: 364 NLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPNDPCKIL 422
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF ++ K EL +T + QIAGRAGR+ S+F G
Sbjct: 423 VATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKELEPITTSQALQIAGRAGRFSSQFKEG 482
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT ++ EDL LL + L P + +AGL P + I M++ PD++L +++ F++ ++
Sbjct: 483 EVTTMNHEDLSLLKEILKRPVDPITAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQ 542
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 543 VDGQYFVCNMDDFKFSAELIQHIPLSLRVRYIFCTAPINKKQPFVCSSLLQFARQYSR 600
>gi|114630826|ref|XP_521497.2| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial [Pan
troglodytes]
gi|410215456|gb|JAA04947.1| suppressor of var1, 3-like 1 [Pan troglodytes]
gi|410255430|gb|JAA15682.1| suppressor of var1, 3-like 1 [Pan troglodytes]
gi|410336055|gb|JAA36974.1| suppressor of var1, 3-like 1 [Pan troglodytes]
Length = 786
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 196/456 (42%), Positives = 285/456 (62%), Gaps = 21/456 (4%)
Query: 22 DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVIL 81
D++ PF L K I F +D C+ K +DL P WYP AR RK+I
Sbjct: 156 DDLFPFFLRHAKQI--FPVLD------CTDDLRK---ISDLRIPPNWYPDARAMQRKIIF 204
Query: 82 HVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVD- 140
H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+ ++ N A V CDL+TG+ER V
Sbjct: 205 HSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERVTVQP 264
Query: 141 ---GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 197
A H + TVEM V + Y+ AVIDEIQM+ RG+++TRALLG+CA E+HLCG+PA
Sbjct: 265 NGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPA 324
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
A+ L+ +++ TG++V+V+ Y+RL+P+ L+ L S N++ GDCIV FS++ IY + +
Sbjct: 325 AIDLVTELMYTTGEEVEVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQ 384
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 317
IE RG +++YGSLPP T+ QA +FND + +LVA+DAIGMGLNL+I RIIF ++
Sbjct: 385 IEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDAIGMGLNLSIRRIIFYSL 443
Query: 318 KKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSP 372
K EL +T + QIAGRAGR+ S+F GEVT ++ EDL LL + L P
Sbjct: 444 IKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVD 503
Query: 373 MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQ 432
+ +AGL P + I M++ PD++L +++ F++ +++ YF N ++ A +I
Sbjct: 504 PIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQH 563
Query: 433 LPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+PL L +Y+FC +P++ L QFA YS+
Sbjct: 564 IPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 599
>gi|383421101|gb|AFH33764.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial precursor [Macaca
mulatta]
gi|384949046|gb|AFI38128.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial precursor [Macaca
mulatta]
Length = 787
Score = 367 bits (941), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 188/418 (44%), Positives = 273/418 (65%), Gaps = 10/418 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+ +
Sbjct: 184 SDLRIPPNWYPDARAVQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE 243
Query: 120 RLNKANVSCDLITGQEREEV--DG--AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG+ER V DG A H + TVEM V + Y+ AVIDEIQM+ RG
Sbjct: 244 KSNAAGVPCDLVTGEERVTVHPDGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARG 303
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG++V+V+ Y+RL+P+ L+ L S
Sbjct: 304 WAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLD 363
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND + +L
Sbjct: 364 NLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPNDPCKIL 422
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF ++ K EL +T + QIAGRAGR+ S+F G
Sbjct: 423 VATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKELEPITTSQALQIAGRAGRFSSQFKEG 482
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT ++ EDL LL + L P + +AGL P + I M++ PD++L +++ F++ ++
Sbjct: 483 EVTTMNHEDLSLLKEILKRPVDPITAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQ 542
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 543 VDGQYFVCNMDDFKFSAELIQHIPLSLRVRYIFCTAPINKKQPFVCSSLLQFARQYSR 600
>gi|119574700|gb|EAW54315.1| suppressor of var1, 3-like 1 (S. cerevisiae), isoform CRA_b [Homo
sapiens]
Length = 788
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 186/418 (44%), Positives = 271/418 (64%), Gaps = 10/418 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+ +
Sbjct: 185 SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE 244
Query: 120 RLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG+ER V A H + TVEM V + Y+ AVIDEIQM+ RG
Sbjct: 245 KSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARG 304
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG++V+V+ Y+RL+P+ L+ L S
Sbjct: 305 WAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLD 364
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND + +L
Sbjct: 365 NLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPNDPCKIL 423
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF ++ K EL +T + QIAGRAGR+ S+F G
Sbjct: 424 VATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEG 483
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT ++ EDL LL + L P + +AGL P + I M++ PD++L +++ F++ ++
Sbjct: 484 EVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQ 543
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 544 VDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 601
>gi|395501390|ref|XP_003755078.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Sarcophilus harrisii]
Length = 779
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 188/419 (44%), Positives = 272/419 (64%), Gaps = 10/419 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP AR RK+I H GPTNSGKT+ A+ R ++ SG+YCGPL+LLA E+
Sbjct: 179 ISDLRLPPNWYPEARSIQRKIIFHSGPTNSGKTYHAIQRYLAAKSGVYCGPLKLLAHEIF 238
Query: 119 KRLNKANVSCDLITGQER--EEVDG--AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N A V CDL+TG+ER + DG A H A TVEM V S Y+ AVIDEIQM+ R
Sbjct: 239 EKSNNAGVLCDLVTGEERVVTDPDGKPAAHVACTVEMCSVNSPYEVAVIDEIQMIKDPAR 298
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+CA E+HLCG+ AA+ ++ +++ TG++V+V+ YERL+P+ LN L S
Sbjct: 299 GWAWTRALLGLCAKEIHLCGEAAAIDIVTELMYTTGEEVEVRKYERLTPITVLNHALESL 358
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N++ GDCIV FS++ IY + + IE+RG +++YGSLPP T+ QA +FND +
Sbjct: 359 DNLRPGDCIVCFSKNDIYTVSRQIEARGLQ-SAVIYGSLPPGTKLAQAKKFNDPDDPCKI 417
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I RIIF+++ K E+ ++ + QI+GRAGR+ SKF
Sbjct: 418 LVATDAIGMGLNLSIKRIIFNSLIKPSINEKGEKEIEPISTSQALQISGRAGRFSSKFKE 477
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
GEVT + EDL LL + L P +E+AGL P D I M++ PD++L +++ F++ +
Sbjct: 478 GEVTTMYPEDLKLLKEILNRPVEPIEAAGLHPTADQIEMFAYHLPDTTLANLIDIFVDFS 537
Query: 410 KLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
++ YF N ++ A +I +PL L +Y+F +P++ L QFA YS+
Sbjct: 538 QVDGQYFVCNMDDFKFSADLIQHIPLSLRVRYVFGTAPINKKQPFVCSSLLQFARQYSR 596
>gi|31543667|ref|NP_003162.2| ATP-dependent RNA helicase SUPV3L1, mitochondrial precursor [Homo
sapiens]
gi|74759699|sp|Q8IYB8.1|SUV3_HUMAN RecName: Full=ATP-dependent RNA helicase SUPV3L1, mitochondrial;
AltName: Full=Suppressor of var1 3-like protein 1;
Short=SUV3-like protein 1; Flags: Precursor
gi|23273588|gb|AAH36112.1| Suppressor of var1, 3-like 1 (S. cerevisiae) [Homo sapiens]
gi|119574699|gb|EAW54314.1| suppressor of var1, 3-like 1 (S. cerevisiae), isoform CRA_a [Homo
sapiens]
gi|123980202|gb|ABM81930.1| suppressor of var1, 3-like 1 (S. cerevisiae) [synthetic construct]
gi|123995015|gb|ABM85109.1| suppressor of var1, 3-like 1 (S. cerevisiae) [synthetic construct]
gi|158261855|dbj|BAF83105.1| unnamed protein product [Homo sapiens]
Length = 786
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 186/418 (44%), Positives = 271/418 (64%), Gaps = 10/418 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+ +
Sbjct: 183 SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE 242
Query: 120 RLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG+ER V A H + TVEM V + Y+ AVIDEIQM+ RG
Sbjct: 243 KSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARG 302
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG++V+V+ Y+RL+P+ L+ L S
Sbjct: 303 WAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLD 362
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND + +L
Sbjct: 363 NLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPNDPCKIL 421
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF ++ K EL +T + QIAGRAGR+ S+F G
Sbjct: 422 VATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEG 481
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT ++ EDL LL + L P + +AGL P + I M++ PD++L +++ F++ ++
Sbjct: 482 EVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQ 541
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 542 VDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 599
>gi|417404612|gb|JAA49050.1| Putative mitochondrial rna helicase suv3 dead-box superfamily
[Desmodus rotundus]
Length = 786
Score = 366 bits (940), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 187/419 (44%), Positives = 273/419 (65%), Gaps = 10/419 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+
Sbjct: 183 ISDLRIPPNWYPEARAIQRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYCGPLKLLAHEIF 242
Query: 119 KRLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N V CDL+TG+ER VD A H A TVEM V + Y+ AVIDEIQM+ R
Sbjct: 243 EKSNADGVPCDLVTGEERVTVDPDGRQAAHVACTVEMCSVTTPYEVAVIDEIQMIKDPAR 302
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+CA E+HLCG+ AA+ L+ ++L +TG++V+V++Y+RL+P+ L+ L S
Sbjct: 303 GWAWTRALLGLCAEEVHLCGEAAAIDLVTELLYMTGEEVEVRNYKRLTPICVLDQALESL 362
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND +
Sbjct: 363 DNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPEDPCKI 421
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I RIIF ++ K EL +T + QIAGRAGR+ SK+
Sbjct: 422 LVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSKYKE 481
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
GEVT ++ EDL LL + L P +++AGL P + I M++ PD++L +++ F++ +
Sbjct: 482 GEVTTMNREDLRLLKEILNRPVDPIKAAGLHPTAEQIEMFAYHLPDTTLSNLIDIFVDFS 541
Query: 410 KLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
++ +YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 542 QVDGHYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 600
>gi|397489940|ref|XP_003815969.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial [Pan
paniscus]
Length = 786
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 186/418 (44%), Positives = 271/418 (64%), Gaps = 10/418 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+ +
Sbjct: 183 SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE 242
Query: 120 RLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG+ER V A H + TVEM V + Y+ AVIDEIQM+ RG
Sbjct: 243 KSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARG 302
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG++V+V+ Y+RL+P+ L+ L S
Sbjct: 303 WAWTRALLGLCAEEVHLCGEPAAIDLVTELMYTTGEEVEVRDYKRLTPISVLDHALESLD 362
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND + +L
Sbjct: 363 NLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPNDPCKIL 421
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF ++ K EL +T + QIAGRAGR+ S+F G
Sbjct: 422 VATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEG 481
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT ++ EDL LL + L P + +AGL P + I M++ PD++L +++ F++ ++
Sbjct: 482 EVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQ 541
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 542 VDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 599
>gi|395820606|ref|XP_003783654.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Otolemur garnettii]
Length = 785
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 185/418 (44%), Positives = 273/418 (65%), Gaps = 10/418 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+ +
Sbjct: 184 SDLRIPPNWYPEARAIQRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYCGPLKLLAHEIFE 243
Query: 120 RLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG+ER VD A H A TVEM + + Y+ AVIDEIQM+ RG
Sbjct: 244 KSNAAGVPCDLVTGEERVTVDPNGKQAAHVACTVEMCSITTPYEVAVIDEIQMIRDPARG 303
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+HLCG+ AA+ L+ +++ TG++V+V++YERL+P+ L+ L S
Sbjct: 304 WAWTRALLGLCAEEVHLCGESAAIDLVTELMYTTGEEVEVRNYERLTPISVLDHALESLD 363
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND + +L
Sbjct: 364 NLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPNDPCKIL 422
Query: 296 VASDAIGMGLNLNISRIIF-----STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF T+ + E+ +T + QIAGRAGR+ S+F G
Sbjct: 423 VATDAIGMGLNLSIKRIIFYSLMKPTVNEKGEREIEPITTSQALQIAGRAGRFSSQFKEG 482
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT ++ +DL LL + L P +++AGL P + I M++ PD++L +++ F++ ++
Sbjct: 483 EVTTMNRDDLGLLKEILNRPVDPIKAAGLHPTAEQIEMFAYHLPDTTLSNLIDIFVDFSQ 542
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 543 VDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 600
>gi|291404244|ref|XP_002718491.1| PREDICTED: suppressor of var1, 3-like 1 [Oryctolagus cuniculus]
Length = 787
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 188/418 (44%), Positives = 274/418 (65%), Gaps = 10/418 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK+I H GPTNSGKT+ A+ R S+ SG+YCGPL+LLA E+ +
Sbjct: 184 SDLRIPPNWYPEARAIRRKIIFHSGPTNSGKTYHAIQRYLSAKSGVYCGPLKLLAHEIFE 243
Query: 120 RLNKANVSCDLITGQEREEV--DG--AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A+V CDL+TG+ER V DG A H A TVEM V + Y+ AVIDEIQM+ RG
Sbjct: 244 KSNAADVPCDLVTGEERVTVGPDGKQAAHVACTVEMCSVTTPYEVAVIDEIQMIRDAARG 303
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+HLCG+ AA+ L+ +++ TG++V+V+ Y+RL+P+ L+ L S
Sbjct: 304 WAWTRALLGLCAEEVHLCGESAAIDLVTELMYTTGEEVEVRHYKRLTPISVLDHALESLD 363
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND S +L
Sbjct: 364 NLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPSDPCKIL 422
Query: 296 VASDAIGMGLNLNISRIIF-----STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF T+ + E+ +T + QIAGRAGR+ S+F G
Sbjct: 423 VATDAIGMGLNLSIRRIIFYSLLKPTVNEKGEKEIEPITTSQALQIAGRAGRFSSQFKEG 482
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT ++ EDL LL + L P +++AGL P + I M++ PD++L +++ F++ ++
Sbjct: 483 EVTTMNREDLRLLKEILNRPVEPIKAAGLHPTAEQIEMFAYHLPDTTLSNLIDIFVDFSQ 542
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N ++ A +I +PL L +Y+FC +P++ L QFA +S+
Sbjct: 543 VDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQFSR 600
>gi|344275103|ref|XP_003409353.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Loxodonta africana]
Length = 787
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 190/419 (45%), Positives = 270/419 (64%), Gaps = 10/419 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+
Sbjct: 183 ISDLRIPPNWYPEARAIRRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYCGPLKLLAHEIF 242
Query: 119 KRLNKANVSCDLITGQERE--EVDG--AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N A V CDL+TG+ER E DG A H A TVEM V + Y+ AVIDEIQM+ R
Sbjct: 243 EKSNIAGVPCDLVTGEERVTIEPDGKQAAHVACTVEMCSVTTPYEVAVIDEIQMIKDPAR 302
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+CA E+HLCG+ AA+ L+ +++ TG++V+VQ+Y RL+P+ L+ L S
Sbjct: 303 GWAWTRALLGLCAEEVHLCGESAAIDLVTELMYTTGEEVEVQNYNRLTPISVLDHALESL 362
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N+Q GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND +
Sbjct: 363 DNLQPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPDDPCKI 421
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I RIIF ++ K E+ +T + QIAGRAGR+ SKF
Sbjct: 422 LVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKEIEPITTSQALQIAGRAGRFSSKFKE 481
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
GEVT + EDL LL + L P + +AGL P + I M++ PD++L +++ F++ +
Sbjct: 482 GEVTTMHREDLNLLKEILNRPVEPIRAAGLHPTAEQIEMFAYHLPDTTLSNLIDIFVDFS 541
Query: 410 KLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
++ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 542 QVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFICSSLLQFARQYSR 600
>gi|332639894|pdb|3RC8|A Chain A, Human Mitochondrial Helicase Suv3 In Complex With Short
Rna Fragment
Length = 677
Score = 365 bits (938), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 186/418 (44%), Positives = 271/418 (64%), Gaps = 10/418 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+ +
Sbjct: 138 SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE 197
Query: 120 RLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG+ER V A H + TVEM V + Y+ AVIDEIQM+ RG
Sbjct: 198 KSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARG 257
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG++V+V+ Y+RL+P+ L+ L S
Sbjct: 258 WAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLD 317
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND + +L
Sbjct: 318 NLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPNDPCKIL 376
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF ++ K EL +T + QIAGRAGR+ S+F G
Sbjct: 377 VATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEG 436
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT ++ EDL LL + L P + +AGL P + I M++ PD++L +++ F++ ++
Sbjct: 437 EVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQ 496
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 497 VDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 554
>gi|410975257|ref|XP_003994050.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial [Felis
catus]
Length = 788
Score = 365 bits (937), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 187/419 (44%), Positives = 273/419 (65%), Gaps = 10/419 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+
Sbjct: 185 ISDLRIPPNWYPEARAIQRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYCGPLKLLAHEIF 244
Query: 119 KRLNKANVSCDLITGQEREEV--DG--AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N A V CDL+TG+ER V DG A H A TVEM V + Y+ AVIDEIQM+ R
Sbjct: 245 EKSNAAGVPCDLVTGEERVTVEPDGKQAAHVACTVEMCSVTTPYEVAVIDEIQMIKDPAR 304
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+CA E+HLCG+ AA+ L+ +++ TG++V+V++Y+RL+P+ L+ L S
Sbjct: 305 GWAWTRALLGLCAEEVHLCGESAAIDLVTELMYTTGEEVEVRNYKRLTPISVLDHALESL 364
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND +
Sbjct: 365 DNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPDDPCKI 423
Query: 295 LVASDAIGMGLNLNISRIIF-----STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I RIIF T+ + E+ +T + QIAGRAGR+ SK+
Sbjct: 424 LVATDAIGMGLNLSIRRIIFYSLIKPTINEKGEKEIEPITTSQALQIAGRAGRFSSKYKE 483
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
GEVT ++ EDL LL + L P +++AGL P + I M++ PD++L +++ F++ +
Sbjct: 484 GEVTTMNREDLNLLKEILNRPVDPIKAAGLHPTAEQIEMFAYHLPDTTLSNLIDIFVDFS 543
Query: 410 KLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
++ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 544 QVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 602
>gi|73952813|ref|XP_546136.2| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
isoform 1 [Canis lupus familiaris]
Length = 788
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 186/419 (44%), Positives = 273/419 (65%), Gaps = 10/419 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+
Sbjct: 184 ISDLRIPPNWYPEARAIQRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYCGPLKLLAHEIF 243
Query: 119 KRLNKANVSCDLITGQEREEV--DG--AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N A V CDL+TG+ER V DG A H A TVEM V + Y+ AVIDEIQM+ R
Sbjct: 244 EKSNAAGVPCDLVTGEERVTVGPDGKQAAHVACTVEMCSVTTPYEVAVIDEIQMIKDPAR 303
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+CA E+HLCG+ AA+ L+ +++ TG++V+V++Y+RL+P+ L+ L S
Sbjct: 304 GWAWTRALLGLCAEEVHLCGESAAIDLVTELMYTTGEEVEVRNYKRLTPISVLDHALESL 363
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N++ GDCIV F+++ IY + + IE RG +++YGSLPP T+ QA +FND +
Sbjct: 364 DNLRPGDCIVCFNKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPDDPCKI 422
Query: 295 LVASDAIGMGLNLNISRIIF-----STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I RIIF T+ + E+ +T + QIAGRAGR+ SK+
Sbjct: 423 LVATDAIGMGLNLSIRRIIFYSLIKPTINEKGEKEIEPITTSQALQIAGRAGRFSSKYKE 482
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
GEVT ++ EDL LL + L P +++AGL P + I M++ PD++L +++ F++ +
Sbjct: 483 GEVTTMNREDLSLLKEILKRPVNPIKAAGLHPTAEQIEMFAYHLPDTTLSNLIDIFVDFS 542
Query: 410 KLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
++ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 543 QVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 601
>gi|194205953|ref|XP_001918024.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial [Equus
caballus]
Length = 786
Score = 365 bits (936), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 187/418 (44%), Positives = 272/418 (65%), Gaps = 10/418 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+ +
Sbjct: 183 SDLRIPPNWYPEARAIQRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYCGPLKLLAHEIFE 242
Query: 120 RLNKANVSCDLITGQEREEV--DG--AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG+ER V DG A H A TVEM V + Y+ AVIDEIQM+ RG
Sbjct: 243 KSNAAGVPCDLVTGEERVTVEPDGKQAAHVACTVEMCSVTTPYEVAVIDEIQMIKDPARG 302
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+HLCG+ AA+ L+ +++ TG++V+V++Y+RL+P+ L+ L S
Sbjct: 303 WAWTRALLGLCAEEVHLCGESAAIDLVTELMYTTGEEVEVRTYKRLTPITVLDHALESLD 362
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND +L
Sbjct: 363 NLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPDDPCKIL 421
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF ++ K E+ +T + QIAGRAGR+ SKF G
Sbjct: 422 VATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKEIEPITTSQALQIAGRAGRFSSKFKEG 481
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT ++ EDL LL + L P + +AGL P + I M++ PD++L +++ F++ ++
Sbjct: 482 EVTTMNREDLNLLREILNRPVDPIRAAGLHPTAEQIEMFAYHLPDTTLSNLIDIFVDFSQ 541
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N ++ A +I +PL L +Y+FC +P++ L QFA +S+
Sbjct: 542 VDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQFSR 599
>gi|403273843|ref|XP_003928708.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Saimiri boliviensis boliviensis]
Length = 786
Score = 364 bits (935), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 186/418 (44%), Positives = 272/418 (65%), Gaps = 10/418 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+ +
Sbjct: 184 SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE 243
Query: 120 RLNKANVSCDLITGQEREEV--DG--AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG+ER V DG A H A TVEM V + Y+ AVIDEIQM+ RG
Sbjct: 244 KSNAAGVPCDLVTGEERVTVQPDGKQASHVACTVEMCSVTTPYEVAVIDEIQMIRDPARG 303
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG++V+V+ Y+RL+P+ L+ L S
Sbjct: 304 WAWTRALLGLCAEEIHLCGEPAAIDLVTELMFTTGEEVEVRDYKRLTPISVLDHALESLD 363
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + +E RG +++YGSLPP + QA +FND + +L
Sbjct: 364 NLRPGDCIVCFSKNDIYSVSRQVEIRGLE-SAVIYGSLPPGAKLAQAKKFNDPNDPCKIL 422
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF ++ K E+ +T + QIAGRAGR+ S+F G
Sbjct: 423 VATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKEIEPITTSQALQIAGRAGRFSSQFKEG 482
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT ++ EDL LL + L P + +AGL P + I M++ PD++L +++ F++ ++
Sbjct: 483 EVTTMNREDLSLLKEILNRPVDPIRAAGLHPTAEQIEMFAYHLPDTTLSNLIDIFVDFSQ 542
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 543 VDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 600
>gi|47218714|emb|CAG05686.1| unnamed protein product [Tetraodon nigroviridis]
Length = 728
Score = 364 bits (934), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 181/418 (43%), Positives = 273/418 (65%), Gaps = 10/418 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RKVI H GPTNSGKT+ A+ R ++ SG+YCGPL+LLA E+ +
Sbjct: 134 SDLRLPAHWYPEARAVQRKVIFHAGPTNSGKTYHAIQRYLAAKSGVYCGPLKLLAHEIFE 193
Query: 120 RLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V+CDL+TG+ER +D A H A T+EM V + Y+ AVIDEIQM+ +RG
Sbjct: 194 KSNTAGVACDLVTGEERIFMDPEGRSAGHVACTIEMCSVTTPYEVAVIDEIQMIRDPSRG 253
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+H+CG+ AAV +++++ TG++V+V +Y+RL+P L+ + S
Sbjct: 254 WAWTRALLGLCAEEIHVCGESAAVEFVRELMYTTGEEVEVHTYQRLTPFTVLDQAVESLD 313
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE RG C+++YGSLPP T+ QA +FND +L
Sbjct: 314 NLRPGDCIVCFSKNDIYSISRQIEIRGLE-CAVIYGSLPPGTKLSQAKKFNDPDDPCKIL 372
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVE-----LRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF+++ K + E + ++ + QIAGRAGR+ SKF G
Sbjct: 373 VATDAIGMGLNLSIKRIIFNSLVKPNINEKGEKQMETISTSQALQIAGRAGRFSSKFKEG 432
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT L +DLP+L + L +E+AGL P + I M++ PD++L +++ F+ ++
Sbjct: 433 EVTTLHRDDLPVLKEILSHSVDPIETAGLHPTAEQIEMFAYHLPDATLSNLVDIFVSLSQ 492
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N ++ +A +I +PL L +Y+FC +P++ +FA +S+
Sbjct: 493 VDGLYFVCNIDDFKFLADMIQHIPLNLRSRYVFCTAPINKKQPFVCTSFLKFARQFSR 550
>gi|221042840|dbj|BAH13097.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 363 bits (932), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 185/418 (44%), Positives = 270/418 (64%), Gaps = 10/418 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGP +LLA E+ +
Sbjct: 52 SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPPKLLAHEIFE 111
Query: 120 RLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG+ER V A H + TVEM V + Y+ AVIDEIQM+ RG
Sbjct: 112 KSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARG 171
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG++V+V+ Y+RL+P+ L+ L S
Sbjct: 172 WAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLD 231
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND + +L
Sbjct: 232 NLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPNDPCKIL 290
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF ++ K EL +T + QIAGRAGR+ S+F G
Sbjct: 291 VATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEG 350
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT ++ EDL LL + L P + +AGL P + I M++ PD++L +++ F++ ++
Sbjct: 351 EVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQ 410
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 411 VDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 468
>gi|301755872|ref|XP_002913774.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Ailuropoda melanoleuca]
gi|281346957|gb|EFB22541.1| hypothetical protein PANDA_001610 [Ailuropoda melanoleuca]
Length = 790
Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 184/419 (43%), Positives = 271/419 (64%), Gaps = 10/419 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+
Sbjct: 186 ISDLRIPPNWYPEARAIQRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYCGPLKLLAHEIF 245
Query: 119 KRLNKANVSCDLITGQEREEVDG----AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N A V CDL+TG+ER +D A H A TVEM V + Y+ AVIDEIQM+ R
Sbjct: 246 EKSNAAGVPCDLVTGEERVTIDADGKQAAHVACTVEMCSVTTPYEVAVIDEIQMIKDPAR 305
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+CA E+HLCG+ AA+ L+ +++ TG++V+V++Y+RL+P+ L+ L S
Sbjct: 306 GWAWTRALLGLCAEEVHLCGESAAIDLVTELMYTTGEEVEVRNYKRLTPISVLDHALESL 365
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND +
Sbjct: 366 DNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPDDPCKI 424
Query: 295 LVASDAIGMGLNLNISRIIF-----STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I RIIF T+ + E+ +T + QIAGRAGR+ SK+
Sbjct: 425 LVATDAIGMGLNLSIRRIIFYSLIKPTINEKGEKEIEPITTSQALQIAGRAGRFSSKYKE 484
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
GEVT ++ EDL LL + L +++AGL P + I M++ PD++L +++ F++ +
Sbjct: 485 GEVTTMNREDLSLLKEILNRRVDPIKAAGLHPTAEQIEMFAYHLPDTTLSNLIDIFVDFS 544
Query: 410 KLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
++ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 545 QVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 603
>gi|354475450|ref|XP_003499942.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Cricetulus griseus]
gi|344237682|gb|EGV93785.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial [Cricetulus
griseus]
Length = 779
Score = 363 bits (931), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 187/418 (44%), Positives = 269/418 (64%), Gaps = 10/418 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK++ H GPTNSGKT+ A+ R S+ SG+YCGPL+LLA E+ +
Sbjct: 183 SDLRIPPNWYPEARAIRRKIVFHSGPTNSGKTYHAIQRYLSAKSGVYCGPLKLLAHEIFE 242
Query: 120 RLNKANVSCDLITGQEREEVDG----AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG+ER+ V+ A H + TVEM V + Y+ AVIDEIQM+ RG
Sbjct: 243 KSNAAGVPCDLVTGEERQTVEAEGKQATHVSCTVEMCSVTTPYEVAVIDEIQMIRDLGRG 302
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+HLCG+ AA+ L+ ++L TG++V+V YERL+P+ L+ L S
Sbjct: 303 WAWTRALLGLCAEEVHLCGESAAIDLVTELLYTTGEEVEVHKYERLTPISVLDHALESLD 362
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND S +L
Sbjct: 363 NLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQARKFNDPSDPCKIL 421
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF ++ K EL +T + QIAGRAGR+ S F G
Sbjct: 422 VATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKELEPITTSQALQIAGRAGRFSSHFKEG 481
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT + EDL LL + L +++AGL P + I M++ P+++L +++ F++ A+
Sbjct: 482 EVTTMYREDLALLKEILNRAVDPIQAAGLHPTAEQIEMFAYHLPETTLSNLIDIFVDFAQ 541
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 542 VDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 599
>gi|115938145|ref|XP_786336.2| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Strongylocentrotus purpuratus]
Length = 863
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 179/419 (42%), Positives = 267/419 (63%), Gaps = 10/419 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DLT P WYP AR RK+I H GPTNSGKT+ AL + SG+YCGPL+LLA EV
Sbjct: 218 ISDLTDPAQWYPEARAIDRKIIFHAGPTNSGKTYHALESYSQAKSGVYCGPLKLLASEVH 277
Query: 119 KRLNKANVSCDLITGQEREEVDG----AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
K+ N+ + CDL+TG+ER+ + H A TVEM V Y+ AVIDEIQML +R
Sbjct: 278 KKTNERGIMCDLVTGEERKYAHPDSIPSSHVACTVEMTSVSQPYEVAVIDEIQMLRDPSR 337
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+ A E+HLCG+ AA+ L++Q+ TGD+++++ Y+RL+PL L+ PL +
Sbjct: 338 GWAWTRALLGVNAKEIHLCGEQAAIDLVKQLTLSTGDELEIREYKRLTPLQILDQPLDNL 397
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N++ GDCIV FS++ +Y + + +E+ GK C+++YGSLPP + QA +FND +
Sbjct: 398 ENVRPGDCIVAFSKNDLYSISRQLEAMGKE-CAVIYGSLPPGAKLSQAAKFNDPDDPCKI 456
Query: 295 LVASDAIGMGLNLNISRIIFSTM-----KKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I R+IF ++ + E+ LT + QIAGRAGR+ ++F
Sbjct: 457 LVATDAIGMGLNLSIKRVIFKSLIRPYINEKGEKEMHRLTTSQALQIAGRAGRFRTQFEE 516
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
GE T +DLPLL + L P +E+ GL P + I +++ PD++L ++E F+ +
Sbjct: 517 GEATTFHGDDLPLLKEILANPVEKIEAGGLHPTAEQIELFAYHLPDATLSNLIEIFINLS 576
Query: 410 KLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ +NYF N ++ +A +I +PL L +Y+FC +P++ +FA YS+
Sbjct: 577 IVEKNYFVCNVDDFKFLADMIQHVPLHLRARYVFCCAPINRKLPFICTMFLKFARQYSR 635
>gi|332218176|ref|XP_003258235.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase SUPV3L1,
mitochondrial [Nomascus leucogenys]
Length = 781
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 184/418 (44%), Positives = 270/418 (64%), Gaps = 10/418 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+ +
Sbjct: 183 SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE 242
Query: 120 RLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG++R V A H + TVEM V + Y+ AVIDEIQM+ RG
Sbjct: 243 KSNAAGVPCDLVTGEDRVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARG 302
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG++V+V+ Y+RL+P+ L+ L S
Sbjct: 303 WAWTRALLGLCAKEVHLCGEPAAIDLVTELMYTTGEEVEVRDYKRLTPISVLDHALESLD 362
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND + +L
Sbjct: 363 NLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPNDPCKIL 421
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF ++ K EL +T + QIAGRAGR+ S+F G
Sbjct: 422 VATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKELEPITTSQALQIAGRAGRFSSRFKEG 481
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT ++ +DL LL + L P + +AGL P + I M++ PD++L +++ F++ ++
Sbjct: 482 EVTTMNHKDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQ 541
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N + A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 542 VDGQYFVCNMADFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 599
>gi|410912098|ref|XP_003969527.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Takifugu rubripes]
Length = 775
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 181/418 (43%), Positives = 272/418 (65%), Gaps = 10/418 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RKVI H GPTNSGKT+QA+ R ++ SG+YCGPL+LLA E+ +
Sbjct: 183 SDLRLPAYWYPEARAIQRKVIFHAGPTNSGKTYQAIQRYLAAKSGVYCGPLKLLAHEIFE 242
Query: 120 RLNKANVSCDLITGQER----EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG+ER E A H A T+EM V + Y+ AVIDEIQM+ +RG
Sbjct: 243 KSNTAGVMCDLVTGEERIFMEPEGQAAAHVACTIEMCSVTTPYEVAVIDEIQMIRDPSRG 302
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+H+CG+ AAV +++++ TG++V+V +Y+RL+P L+ + S
Sbjct: 303 WAWTRALLGLCAEEIHVCGESAAVDFVRELMYTTGEEVEVHTYKRLTPFTVLDQAVESLD 362
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
++ GDCIV FS++ IY + + IE RG C+++YGSLPP T+ QA +FND + ++
Sbjct: 363 KLRPGDCIVCFSKNDIYSISRQIEIRGLE-CAVIYGSLPPGTKLSQAKKFNDPNDPCKIM 421
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVE-----LRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF+++ K + E + ++ + QIAGRAGR+ SKF G
Sbjct: 422 VATDAIGMGLNLSIKRIIFNSLVKPNINEKGEKHMETISTSQALQIAGRAGRFSSKFKEG 481
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT L +DLP+L + L +ESAGL P + I M++ PD++L +++ F+ ++
Sbjct: 482 EVTTLYRDDLPVLKEILSHSVDPIESAGLHPTAEQIEMFAYHLPDATLSNLVDIFVSLSQ 541
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N ++ +A +I +PL L +Y+FC +P++ +FA +S+
Sbjct: 542 VDGLYFVCNIDDFKFLADMIQHIPLNLRSRYVFCTAPINKKQPFVCTSFLKFARQFSR 599
>gi|432106720|gb|ELK32372.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial, partial [Myotis
davidii]
Length = 747
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 187/419 (44%), Positives = 271/419 (64%), Gaps = 10/419 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP AR RKVI H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+
Sbjct: 143 ISDLRIPPNWYPEARAIQRKVIFHSGPTNSGKTYHAIQKYLSAKSGVYCGPLKLLAHEIF 202
Query: 119 KRLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N V CDL+TG+ER V+ A H A TVEM V + Y+ AVIDEIQM+ R
Sbjct: 203 EKSNAEGVPCDLVTGEERVLVEPNGKQAAHVACTVEMCSVTTPYEVAVIDEIQMIKDPAR 262
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+CA E+HLCG+ AA+ L+ ++L TG++V+V++Y RL+P+ L+ L S
Sbjct: 263 GWAWTRALLGLCAEEVHLCGEAAAIDLVTELLYTTGEEVEVRNYTRLTPISVLDHALESL 322
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND +
Sbjct: 323 DNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPDDPCKI 381
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I RIIF ++ K EL +T + QIAGRAGR+ SK+
Sbjct: 382 LVATDAIGMGLNLSIRRIIFYSLIKPSINEKGEKELEPITTSQALQIAGRAGRFSSKYKE 441
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
GEVT ++ EDL LL + L +P +++AGL P + I M++ PD++L +++ F++ +
Sbjct: 442 GEVTTMNREDLCLLKEILNKPVDPIKAAGLHPTAEQIEMFAYHLPDTTLSNLIDIFVDFS 501
Query: 410 KLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
++ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 502 QVDGQYFVCNLDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 560
>gi|325185729|emb|CCA20210.1| ATPdependent RNA helicase SUPV3L1 putative [Albugo laibachii Nc14]
Length = 806
Score = 362 bits (929), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 193/439 (43%), Positives = 282/439 (64%), Gaps = 11/439 (2%)
Query: 52 SGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSS------SGI 105
+ +K + TDL PH YP + RK+I H GPTNSGKTH AL RL+++S G+
Sbjct: 234 TALKLRELTDLRLPHELYPRSNGLKRKIIYHEGPTNSGKTHNALERLKNASIGGEYSGGL 293
Query: 106 YCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDE 165
YCGPLRLLA E+ +R+N LITGQE++ + A H A TVEMA++ +D AVIDE
Sbjct: 294 YCGPLRLLALEIYERMNLEGFYTSLITGQEKKIMPHATHVASTVEMANINVKWDVAVIDE 353
Query: 166 IQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV 225
+Q++G RG+++TRAL G+ A E+H+CG AV LI+ + TGDD +++SY+R S L
Sbjct: 354 VQLIGDLQRGWAWTRALFGLQAREIHVCGSGDAVNLIRNFAETTGDDFELKSYKRRSSLE 413
Query: 226 PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRF 285
+ S S IQ GDC+V FSR IY++K+ IE C IVYG LPP+TR++QA F
Sbjct: 414 IETSHVSSLSQIQAGDCVVAFSRREIYQIKRDIERTTGMKCCIVYGLLPPQTRSQQARLF 473
Query: 286 NDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE--LRDLTVPEVKQIAGRAGRY 343
ND +S + VLVASDAIGMGLNLNI RIIFS +KK++G + D++ VKQIAGRAGRY
Sbjct: 474 NDPNSGYSVLVASDAIGMGLNLNIRRIIFSNVKKYNGASGGMADISPSLVKQIAGRAGRY 533
Query: 344 GSKFP-VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPD-SSLYGI 401
G++F VG+V+ EDL + S EP L SAGLFPN + + ++ P + L +
Sbjct: 534 GTQFADVGKVSSFRKEDLDYIRTSFYEPLTPLRSAGLFPNSEQMEQFAAHLPGVTDLAEL 593
Query: 402 LEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQ 461
++ ++ A+L YF N ++ + A ++ +PL L +++ FC++P++ + ++ +
Sbjct: 594 VDKYVMLARLDGEYFMCNHADLKESADLLKDIPLVLSDRFTFCMAPLNTRNMLARRIFQD 653
Query: 462 FATNYSKKGIVQLREIFTP 480
+A+ ++K V+L +I+ P
Sbjct: 654 YASAHAKLDRVKL-DIYLP 671
>gi|328776802|ref|XP_624007.3| PREDICTED: ATP-dependent RNA helicase SUV3 homolog,
mitochondrial-like [Apis mellifera]
Length = 736
Score = 362 bits (928), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 195/421 (46%), Positives = 269/421 (63%), Gaps = 13/421 (3%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP+AR K RK+I HVGPTNSGKT+QAL R S+ SG+YCGPL+LLA EV
Sbjct: 172 ISDLRNPSKWYPIARSKKRKIIFHVGPTNSGKTYQALQRFISAKSGVYCGPLKLLATEVF 231
Query: 119 KRLNKANVSCDLITGQEREEVDG----AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
+ N CDLITG+E + A H + TVEMA++ + YD AVIDEIQ++ R
Sbjct: 232 NKCNFMGTPCDLITGEEHKYAKDVTCPANHISCTVEMANLQNVYDVAVIDEIQLICDPLR 291
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+ ANE+HLCG+ AA+P+IQ I T + V+++ Y+RL+PL N L S
Sbjct: 292 GWAWTRALLGLPANEIHLCGESAAIPIIQSICLTTSESVEIKEYKRLTPLEIENSALYSL 351
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
NIQ GDCIV FSR+ I+ + AIE G H +++YGSLPP T+ QATRFND + +
Sbjct: 352 KNIQAGDCIVCFSRNEIFTVSNAIEKMG-HEVAVIYGSLPPGTKLAQATRFNDPNDPCKI 410
Query: 295 LVASDAIGMGLNLNISRIIF-----STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA++AIGMGLNL+I RIIF T+ K +++ ++V QIAGRAGRYG+++
Sbjct: 411 LVATNAIGMGLNLHIRRIIFYSLIQPTINKKGEIDISTISVSTALQIAGRAGRYGTQWSK 470
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPM-LESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLEN 408
G VT EDL LL K LLE +P + GL P D I +YS P ++L ++ F+
Sbjct: 471 GFVTTYKPEDLSLL-KKLLEQTPEDIHQGGLHPTPDQIELYSYYLPKAALSNLINIFIAL 529
Query: 409 AKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYS 467
+L ++ YF N ++ +A +I +PL L +YLFC +PV+ ++ ++A S
Sbjct: 530 CELDDSLYFICNLDDFKFLADMIQHIPLPLSTRYLFCCAPVNRKIPLTCTMFLKYARECS 589
Query: 468 K 468
K
Sbjct: 590 K 590
>gi|260787114|ref|XP_002588600.1| hypothetical protein BRAFLDRAFT_131755 [Branchiostoma floridae]
gi|229273765|gb|EEN44611.1| hypothetical protein BRAFLDRAFT_131755 [Branchiostoma floridae]
Length = 750
Score = 361 bits (926), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 176/418 (42%), Positives = 270/418 (64%), Gaps = 10/418 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+D P +WY AR RK++ H GPTNSGKT+ AL R + SGIYCGPL+LLA EV +
Sbjct: 141 SDSRDPASWYSEARAIHRKIVFHAGPTNSGKTYHALERFSQAKSGIYCGPLKLLANEVHQ 200
Query: 120 RLNKANVSCDLITGQER----EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N V CDL+TG+ER E+ + H + TVEM ++ Y+ AV+DEIQM+ RG
Sbjct: 201 KTNDRGVPCDLVTGEERVYAREDGQPSGHVSCTVEMTNIHQPYEVAVVDEIQMIKDPQRG 260
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG++++V+ Y+RL+ L L PLGS +
Sbjct: 261 WAWTRALLGLCAEEIHLCGEPAAIDLVTEMMLSTGEELEVRRYKRLTGLTYLKEPLGSLN 320
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GD IV FS+ I++L + IE+ GK C+++YGSLPP T+ QA +FN+ +L
Sbjct: 321 NLRPGDAIVCFSKADIFQLSRQIEAMGKE-CAVIYGSLPPGTKLAQAKKFNNPDDPCKIL 379
Query: 296 VASDAIGMGLNLNISRIIFS-----TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMG+NL+I R+IF+ T+ + E+ +L+ + QI GRAGR+G+ F G
Sbjct: 380 VATDAIGMGINLSIKRVIFNSLIKPTLNEKGEKEMDNLSTSQALQIGGRAGRFGTHFQDG 439
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT + EDL LH + +P +E+AGL P + + M++ PD+S+ +++ F+ A+
Sbjct: 440 EVTTMHKEDLQTLHDIVQQPVEPIEAAGLHPTAEQVEMFAYQLPDASMSNLIDIFINLAQ 499
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N E+ +A +I +PL L +Y+FC +P++ +FA +S+
Sbjct: 500 VDSRYFVCNIEDFKFLADMIQHIPLNLRARYVFCCAPINKKQPFLCTSFLKFARQFSR 557
>gi|380021234|ref|XP_003694476.1| PREDICTED: ATP-dependent RNA helicase SUV3 homolog,
mitochondrial-like [Apis florea]
Length = 725
Score = 360 bits (925), Expect = 8e-97, Method: Compositional matrix adjust.
Identities = 192/432 (44%), Positives = 275/432 (63%), Gaps = 16/432 (3%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP+AR + RK+I HVGPTNSGKT+ AL + S+ SG+YCGPL+LLA EV
Sbjct: 172 ISDLRNPSNWYPIARSRKRKIIFHVGPTNSGKTYHALQKFISAKSGVYCGPLKLLANEVF 231
Query: 119 KRLNKANVSCDLITGQEREEVDG----AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
+ N CDLITG+E A H + +VEM ++ + Y+ A+IDEIQ++ TR
Sbjct: 232 NKCNSMGTPCDLITGEEHRYAKSITCPANHISCSVEMTNLQNVYEVAIIDEIQLIRDPTR 291
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+ ANE+HLCG+ AA+PLIQ I TG+ V+++ Y+RL+ L N L S
Sbjct: 292 GWAWTRALLGLAANEIHLCGESAAIPLIQSICLTTGESVEIKEYKRLTTLEIENSALYSL 351
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
NIQ GDCIV FSR+ I+ + KAIE G H +++YGSLPP T+ QA +FND +
Sbjct: 352 KNIQPGDCIVCFSRNEIFTVSKAIEKMG-HKVAVIYGSLPPGTKLAQAAKFNDPKDPCKI 410
Query: 295 LVASDAIGMGLNLNISRIIF-----STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA++AIGMGLNL+I RIIF T+ + +++ ++V QIAGRAGRYG+++
Sbjct: 411 LVATNAIGMGLNLHIRRIIFYSLVQPTINEKGEIDIDTISVSSALQIAGRAGRYGTQWSK 470
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPM-LESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLEN 408
G VT SEDLPLL K LLE +P ++ AGL P D I +Y+ P++ L ++ F+
Sbjct: 471 GFVTTYKSEDLPLL-KKLLEQTPQDIQQAGLHPTADQIELYAYYLPNAPLSNLINIFIAL 529
Query: 409 AKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYS 467
++ ++ YF N ++ +A +I +PL L +YLFC +PV+ ++ ++A S
Sbjct: 530 CEVDDSLYFICNLDDFKFLADMIQHIPLPLSTRYLFCCAPVNRKVPLTCSMFLKYARQCS 589
Query: 468 KK---GIVQLRE 476
K I+ LR+
Sbjct: 590 KNEPVTILWLRQ 601
>gi|2801555|gb|AAB97370.1| putative ATP-dependent mitochondrial RNA helicase [Homo sapiens]
Length = 786
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 185/418 (44%), Positives = 268/418 (64%), Gaps = 10/418 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL LA E+ +
Sbjct: 183 SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLTSLAHEIFE 242
Query: 120 RLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL TG+ER V A H + TVEM V + Y+ AVIDEIQM+ RG
Sbjct: 243 KSNAAGVPCDLETGEERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARG 302
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+HLCG+PAA+ L+ +++ TG++V+V+ Y+RL+P+ L+ L S
Sbjct: 303 WAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVEVRDYKRLTPISVLDHALESLD 362
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND + +L
Sbjct: 363 NLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPNDPCKIL 421
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF ++ K EL +T + QIAGRAGR+ S+F G
Sbjct: 422 VATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEG 481
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT ++ EDL LL + L P + +AGL P + I M++ PD++L +++ F++ ++
Sbjct: 482 EVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQ 541
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 542 VDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 599
>gi|384250636|gb|EIE24115.1| hypothetical protein COCSUDRAFT_28627 [Coccomyxa subellipsoidea
C-169]
Length = 651
Score = 360 bits (923), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 187/445 (42%), Positives = 277/445 (62%), Gaps = 24/445 (5%)
Query: 51 GSGMKKFD----FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIY 106
G +KK+ DL +PH WYP+AR R+++ H+GPTNSGKT+ AL + ++ +G+Y
Sbjct: 82 GDQIKKYSEAIKMLDLRKPHLWYPMARALQRRLVYHMGPTNSGKTYNALRAMCAAETGLY 141
Query: 107 CGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEI 166
CGPLRLLA EV LN + C+L TGQER+EV A+H A T+EM ++ D AV+DEI
Sbjct: 142 CGPLRLLAMEVYDELNASGTFCNLTTGQERKEVPFAQHTACTIEMTNLSKRVDVAVVDEI 201
Query: 167 QMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP 226
Q +G +RG+++TRAL G+ ANE+H+CGD +A+PL++ + G++++V SYER +PL
Sbjct: 202 QQIGDDSRGWAWTRALQGLAANEIHMCGDGSALPLVRTLAHQMGEELQVHSYERFTPLAI 261
Query: 227 LNVPLG-SFSNIQTGDCIVTFSRHAIYRLKKAIES-RGKHLCSIVYGSLPPETRTRQATR 284
L + ++Q GDCIV FSR IY +K+ IE+ G+ +C +VYG+LPPE R QA
Sbjct: 262 EAEGLARGYLDVQPGDCIVAFSRRDIYDIKQLIEAGTGQRVC-VVYGALPPEMRRTQARL 320
Query: 285 FNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI--AGRAGR 342
FND S +DVLVASDA+GMGLNLNI RIIF T++K DG R + + K + AGRAGR
Sbjct: 321 FNDPDSGYDVLVASDAVGMGLNLNIRRIIFHTLEKTDGSFARQIMATQTKGMLCAGRAGR 380
Query: 343 YGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE--SAGLFPNFDLIYMYSRLHPDSSLYG 400
S + G VTCL+ D+P L +++ P L +AGLFP F+ + ++ + +
Sbjct: 381 RNSVYGQGLVTCLNRADIPRLQEAVATPLEALSTPTAGLFPEFEQLEAFAGNQLEQDFHN 440
Query: 401 ILEH------------FLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISP 447
IL F A++ Y F E V++ A ++ ++ L L E++ FC++P
Sbjct: 441 ILTRQAPLHTSLLSMLFAAEARVDGTYMFCKQESVIQAARLLSKVEGLSLQERFWFCMAP 500
Query: 448 VDMNDDISSQGLTQFATNYSKKGIV 472
++ + +++ L +FA Y+ K V
Sbjct: 501 ANLRNPVAAAALLRFAQKYAAKQQV 525
>gi|339235253|ref|XP_003379181.1| putative calcium binding EGF domain protein [Trichinella spiralis]
gi|316978157|gb|EFV61170.1| putative calcium binding EGF domain protein [Trichinella spiralis]
Length = 1281
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 184/420 (43%), Positives = 276/420 (65%), Gaps = 10/420 (2%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
+ +DL P WYP AR R+VI H GPTNSGKT+QAL R ++ SG+YCGPL+LLA EV
Sbjct: 263 NISDLRLPQNWYPEARSIQRRVIFHAGPTNSGKTYQALQRYLAAKSGVYCGPLKLLASEV 322
Query: 118 AKRLNKANVSCDLITGQEREEVDG---AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
+ N A V CDLITG+ER +G ++H + TVEM D Y+ AVIDEIQM+ R
Sbjct: 323 FHKSNAAGVPCDLITGEERCLANGQTCSEHISCTVEMLDTRVHYEVAVIDEIQMMRDLQR 382
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+CA+E+H+CG+ AAV L++++L GD+ ++ +YER +PL L+ PLGS
Sbjct: 383 GWAWTRALLGVCADEIHVCGELAAVDLVKELLVSLGDEFELHTYERKTPLKILDSPLGSL 442
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
+IQ DCIV F+R+ ++++ + +E+ G+ + +++YGSLPP T+ QA +FND DV
Sbjct: 443 DSIQPYDCIVAFNRNDLFKVTRQVEASGRSV-AMIYGSLPPGTKLAQARKFNDPDDPCDV 501
Query: 295 LVASDAIGMGLNLNISRIIFS-----TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I R+IF T+ + EL ++ + QIAGRAGR+G+
Sbjct: 502 LVATDAIGMGLNLSIRRVIFYSLVKVTLNESGEKELEPISTSQALQIAGRAGRFGTFHES 561
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
GEVT L EDLP L L +P+ + +AGLFP + I M++ P ++L +L+ F+ +
Sbjct: 562 GEVTTLRMEDLPALKAILTKPTEPIPAAGLFPTLEQIEMFAYYLPKATLSNLLDIFVSLS 621
Query: 410 KLSENYFF-ANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ E+ FF N +++ +A +I+ +PL L +Y+FC++P+ ++A +S+
Sbjct: 622 AVDESRFFMCNVDDLKFLADMIEHVPLTLKVRYIFCMAPISRKKPFVCGMFLRYARKFSR 681
>gi|431904159|gb|ELK09581.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial [Pteropus alecto]
Length = 785
Score = 358 bits (918), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 184/423 (43%), Positives = 274/423 (64%), Gaps = 10/423 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WY AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+
Sbjct: 183 ISDLRIPPNWYQEARAIQRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYCGPLKLLAHEIF 242
Query: 119 KRLNKANVSCDLITGQERE--EVDG--AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N A V CDL+TG+ER E++G A H A TVEM V + Y+ AVIDEIQM+ R
Sbjct: 243 EKSNAAGVPCDLVTGEERVTIELNGKQAAHVACTVEMCSVTTPYEVAVIDEIQMIKDPAR 302
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+CA E+HLCG+ AA+ L+ +++ TG++V+V++Y+RL+P+ L+ L S
Sbjct: 303 GWAWTRALLGLCAKEVHLCGEAAAIDLVTELMYTTGEEVEVRNYKRLTPISVLDHALESL 362
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND +
Sbjct: 363 DNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPDDPCKI 421
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I RIIF ++ K E+ +T + QIAGRAGR+ SK+
Sbjct: 422 LVATDAIGMGLNLSIRRIIFYSLLKPSVNEKGEKEIEPITTSQALQIAGRAGRFSSKYKE 481
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
GEVT ++ EDL LL + L +P +++AGL P + I M++ PD++L +++ F++ +
Sbjct: 482 GEVTTMNREDLRLLKEILNKPVDPIKAAGLHPTAEQIEMFAYHLPDTTLSNLIDIFVDFS 541
Query: 410 KLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK 469
++ YF N ++ A +I +PL L +Y+FC +P++ L QFA Y +
Sbjct: 542 QVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARVYRRT 601
Query: 470 GIV 472
+
Sbjct: 602 ALA 604
>gi|327277996|ref|XP_003223749.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Anolis carolinensis]
Length = 795
Score = 358 bits (918), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 179/419 (42%), Positives = 273/419 (65%), Gaps = 10/419 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP AR RK++ H GPTNSGKT+ A+ R ++ SGIYCGPL+LLA E+
Sbjct: 177 ISDLRLPPNWYPEARAIQRKIVFHAGPTNSGKTYHAIQRYLAAKSGIYCGPLKLLAHEIF 236
Query: 119 KRLNKANVSCDLITGQEREEVDG----AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N ANV CDL+TG+ER VD A H A T+EM V + Y+ AVIDEIQM+ +R
Sbjct: 237 QKSNDANVPCDLVTGEERVLVDPEGRPAAHVACTIEMCSVNTPYEVAVIDEIQMIKDPSR 296
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+CA E+H+CG+ AA+ L+ +++ TG++V+V++Y+RL+P+ L+ L S
Sbjct: 297 GWAWTRALLGLCAEEIHVCGEAAAINLVTELMYTTGEEVEVRTYKRLTPIKVLDEALESL 356
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
+ GDCIV FS++ IY + + IE+RG C+++YGSLPP T+ QA +FND +
Sbjct: 357 DKLCPGDCIVCFSKNDIYSVSRQIEARGLE-CAVIYGSLPPGTKLTQAKKFNDPGDPCKI 415
Query: 295 LVASDAIGMGLNLNISRIIFS-----TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV 349
+VA+DAIGMGLNL+I RIIF+ T+ + E+ +T + QI+GRAGR+ + F
Sbjct: 416 MVATDAIGMGLNLSIKRIIFNSLVKPTVNEKGEKEMDTITTSQALQISGRAGRFSTVFKE 475
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
GEVT + +DLPLL + L + + +AGL P + I M++ PD++L +++ F+ +
Sbjct: 476 GEVTTMHRDDLPLLKEILSKSVDPILTAGLHPTAEQIEMFAYHLPDATLSNLIDIFVSLS 535
Query: 410 KLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
++ YF N ++ +A +I +PL L +Y+FC +P++ L +FA +S+
Sbjct: 536 QVDGLYFVCNVDDFKFLADMIQHIPLNLRARYVFCTAPINKKQPYVCTSLLKFARQFSR 594
>gi|402880625|ref|XP_003903899.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial [Papio
anubis]
Length = 787
Score = 357 bits (917), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 186/418 (44%), Positives = 266/418 (63%), Gaps = 10/418 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+ +
Sbjct: 184 SDLRIPPNWYPDARAVQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE 243
Query: 120 RLNKANVSCDLITGQEREEV--DG--AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG+ER V DG A H + TVEM V + Y+ AVIDEIQM+ RG
Sbjct: 244 KSNAAGVPCDLVTGEERVTVQPDGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARG 303
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+HLCG+PAA+ L+ +++ V+ Y+RL+P+ L+ L S
Sbjct: 304 WAWTRALLGLCAEEVHLCGEPAAIDLVTELMXXXXXXXXVRDYKRLTPISVLDHALESLD 363
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND S +L
Sbjct: 364 NLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPSDPCKIL 422
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF ++ K EL +T + QIAGRAGR+ S+F G
Sbjct: 423 VATDAIGMGLNLSIRRIIFYSLIKPSVNEKGEKELEPITTSQALQIAGRAGRFSSQFKEG 482
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT + EDL LL + L P + +AGL P + I M++ PD++L +++ F++ ++
Sbjct: 483 EVTTMKHEDLSLLKEILKRPVDPITAAGLHPTAEQIEMFAYHLPDTTLSNLIDIFVDFSQ 542
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 543 VDGQYFVCNMDDFKFSAELIQHIPLSLRVRYIFCTAPINKKQPFVCSSLLQFARQYSR 600
>gi|66815921|ref|XP_641977.1| hypothetical protein DDB_G0278937 [Dictyostelium discoideum AX4]
gi|60470089|gb|EAL68070.1| hypothetical protein DDB_G0278937 [Dictyostelium discoideum AX4]
Length = 904
Score = 357 bits (917), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 187/419 (44%), Positives = 261/419 (62%), Gaps = 5/419 (1%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL PH WY ARK R +ILHVGPTNSGKT+ AL RL S SG+YCGPLRLLA EV
Sbjct: 385 LSDLREPHKWYTEARKFKRNIILHVGPTNSGKTYNALKRLMESESGVYCGPLRLLAHEVY 444
Query: 119 KRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSF 178
++N+ + L+TGQ R + H + T+EM + AVIDE Q++ RG S+
Sbjct: 445 DKMNENGLDTSLMTGQLRINNPNSTHSSCTIEMVSTDKMVEVAVIDEFQLMSDTIRGQSW 504
Query: 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQ 238
TRA+LGI A ELHLCGD A+ L+++I ++TGD + + +YERLS LV P+ S +I+
Sbjct: 505 TRAILGIPAVELHLCGDNTAIELVKKICEITGDTLTINNYERLSTLVIDEEPIASMGDIK 564
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
GDC++ F + I K +E +G C++VYGSLPP TR +QA FN S DVL+A+
Sbjct: 565 KGDCLICFKKKDIIFYKNYLEKQGLK-CAVVYGSLPPTTRVQQAKLFNTDES-VDVLIAT 622
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358
DAIGMGLNLNI R+IF T+KK+DG R+L EVKQIAGRAGR+G+K+PVG VT +
Sbjct: 623 DAIGMGLNLNIGRVIFLTLKKYDGEVDRELYASEVKQIAGRAGRFGTKYPVGSVTTFTRK 682
Query: 359 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLY--GILEHFLENAKLSENYF 416
DL + K P+ + + AG+ P I +S L +L +L F+EN + ++YF
Sbjct: 683 DLAKIRKDWQSPNIISDRAGISPLSQQIEKFSLLPQCKNLKFSEVLTEFMENTNIDKHYF 742
Query: 417 FANCEEVLKVATVIDQLPLRLHEKYLFCISPV-DMNDDISSQGLTQFATNYSKKGIVQL 474
N +E + +A + D + + +K+LF P+ + ++I + ++A YSK V L
Sbjct: 743 LGNFQEFITIAQITDFTTMSVKDKFLFSQCPLSNSKNEIPTSHYIKYALGYSKDRKVNL 801
>gi|351700124|gb|EHB03043.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial [Heterocephalus
glaber]
Length = 786
Score = 357 bits (915), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 183/419 (43%), Positives = 273/419 (65%), Gaps = 11/419 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+ +
Sbjct: 185 SDLRIPPNWYPEARAIQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE 244
Query: 120 RLNKANVSCDLITGQEREEV--DGAK--HRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG+ER V DG + H + TVEM V + Y+ AVIDEIQM+ RG
Sbjct: 245 KSNAAGVPCDLVTGEERVTVVPDGKQTAHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARG 304
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+HLCG+ AA+ ++ +++ TG++V+V++Y+RL+P+ L+ L S
Sbjct: 305 WAWTRALLGLCAEEIHLCGESAAIDMVTELMYTTGEEVEVRNYKRLTPISVLDHALESLD 364
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND S +L
Sbjct: 365 NLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPSDPCKIL 423
Query: 296 VASDAIGMGLNLNISRIIF-----STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
+A+DAIGMGLNL+I RIIF T+ + E+ +T + QIAGRAGR+ S+F G
Sbjct: 424 LATDAIGMGLNLSIKRIIFYSLLKPTINEKGEKEIEPITTSQALQIAGRAGRFSSQFKEG 483
Query: 351 EVTCLDSEDLPLLHKSLLEP-SPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
EVT ++ +DL LL L P P+ +GL P + I M++ PD++L +++ F++ +
Sbjct: 484 EVTTMNHKDLGLLKDILSRPVDPVKVKSGLHPTAEQIEMFAYHLPDTTLSNLIDIFVDFS 543
Query: 410 KLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
++ +YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 544 QVDGHYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 602
>gi|328705328|ref|XP_001949841.2| PREDICTED: ATP-dependent RNA helicase SUV3 homolog,
mitochondrial-like [Acyrthosiphon pisum]
Length = 767
Score = 353 bits (907), Expect = 8e-95, Method: Compositional matrix adjust.
Identities = 186/420 (44%), Positives = 273/420 (65%), Gaps = 13/420 (3%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK+I H GPTNSGKT+ AL + SS+SG+YCGPL+LLA EV +
Sbjct: 165 SDLRSPANWYPEARAINRKIIFHAGPTNSGKTYHALEKYLSSNSGVYCGPLKLLATEVYR 224
Query: 120 RLNKANVSCDLITGQER----EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N+ CDL+TG+ER E+ + +KH + TVEMA+V + YD AVIDEIQM+ +RG
Sbjct: 225 KSNERGTPCDLVTGEERKFADEKNEASKHVSCTVEMANVNTPYDIAVIDEIQMMKDPSRG 284
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+ ANE+H+CG+ AV L++ ++ TG+DV+V Y+RL+ L N + +
Sbjct: 285 WAWTRALLGLVANEIHICGEEGAVDLVKGLMITTGEDVQVCRYKRLTELTVENSAVCTLD 344
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
NI GDCIV FS++ +Y + + IESRG + +++YG LPP T+ QA +FND + VL
Sbjct: 345 NIVPGDCIVCFSKNDVYTVSRGIESRGIEV-AVIYGGLPPNTKLAQAQKFNDPKNSCSVL 403
Query: 296 VASDAIGMGLNLNISRIIF-----STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I R+IF T+ + E+ ++V + QIAGRAGRYG+++ G
Sbjct: 404 VATDAIGMGLNLSIRRVIFYSLIKPTLNEKGEKEMDTISVSQALQIAGRAGRYGTQYEKG 463
Query: 351 EVTCLDSEDLPLLHKSLLE-PSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
VT +DLP L L E P P+L+ AGL P D I +Y+ P+S+L +++ F+ +
Sbjct: 464 CVTTFKPQDLPTLRNILSEKPEPILK-AGLHPTADQIELYAYHLPNSTLSNLVDIFISLS 522
Query: 410 KLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ ++ YF N E+ +A +I +PL L +Y+FC +P++ ++A YSK
Sbjct: 523 TVDDSLYFMCNIEDFKFLADMIQHVPLPLRARYVFCCAPINRKMPFVCTMFLKYARQYSK 582
>gi|242008382|ref|XP_002424985.1| ATP-dependent RNA helicase SUV3, putative [Pediculus humanus
corporis]
gi|212508614|gb|EEB12247.1| ATP-dependent RNA helicase SUV3, putative [Pediculus humanus
corporis]
Length = 681
Score = 353 bits (906), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 183/426 (42%), Positives = 273/426 (64%), Gaps = 14/426 (3%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DLT P WYP AR RK+I H GPTNSGKT+ A+ + SG+YCGPL+LLA E+ +
Sbjct: 170 DLTSPSNWYPEARSMNRKIIFHCGPTNSGKTYNAMESYYQAKSGVYCGPLKLLAVEIFNK 229
Query: 121 LNKANVSCDLITGQE----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGF 176
N + CDL+TG+E E D A H + TVEM + + YD AVIDEIQM+ RG+
Sbjct: 230 ANDKGIQCDLVTGEEVIYSSAEGDQADHISCTVEMCSLENTYDVAVIDEIQMIKDNQRGW 289
Query: 177 SFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSN 236
++TRALLG+ A E+HLCG+ +AV L+ IL T ++++V+ Y+RL+ L L+ + S N
Sbjct: 290 AWTRALLGLKAKEIHLCGEESAVDLVDSILCTTNENLEVKKYKRLTEL-KLDAAIESLKN 348
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296
+ GDCIV FS+ I+ + +A+E G ++ +++YG+LPP T+ + +FND ++ F++LV
Sbjct: 349 VSPGDCIVCFSKRDIFNVTEALEKLGNNV-AVIYGTLPPGTKYAECNKFNDPNNVFNILV 407
Query: 297 ASDAIGMGLNLNISRIIFSTMKK----FDG-VELRDLTVPEVKQIAGRAGRYGSKFPVGE 351
++DAIGMGLNL I R++F +++K +G +E+ ++V + QIAGRAGRYGS++ G
Sbjct: 408 STDAIGMGLNLEIRRVVFYSLEKPVMNDNGIIEIVPISVSQALQIAGRAGRYGSRYEKGY 467
Query: 352 VTCLDSEDLPLLHKSLLE-PSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
VT +DLPLL K L E P P + SAGLFP D I +YS P S+L +++ F+ +
Sbjct: 468 VTTFHKKDLPLLEKILSETPEPAM-SAGLFPTVDQIELYSFYLPQSTLSNLMDIFINLST 526
Query: 411 LSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK 469
+ ++ YF N + A +I+ +PL L KY+FC +PV+ + S +FA YS+
Sbjct: 527 VDDSMYFICNTNDFKIFADMIEHIPLSLRVKYIFCSAPVNKKNQFSCSIFLKFAKMYSEN 586
Query: 470 GIVQLR 475
I+ +
Sbjct: 587 SIISFQ 592
>gi|383856403|ref|XP_003703698.1| PREDICTED: ATP-dependent RNA helicase SUV3 homolog,
mitochondrial-like [Megachile rotundata]
Length = 736
Score = 353 bits (905), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 183/427 (42%), Positives = 276/427 (64%), Gaps = 13/427 (3%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP+AR + RK+I H GPTNSGKT+QAL R S+ SG+YCGPL+LLA EV
Sbjct: 167 SDLRNPANWYPIARSRKRKLIFHSGPTNSGKTYQALRRFMSAKSGVYCGPLKLLAAEVFN 226
Query: 120 RLNKANVSCDLITGQEREEVDGA----KHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N+ CDLITG+E A H + +VEM ++ + Y+ A+IDEIQ++ TRG
Sbjct: 227 KCNQMGTPCDLITGEEHRYAKNASAPANHISCSVEMVNIQNTYEVAIIDEIQLIRDLTRG 286
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRA LGI A+E+HLCG+ +A+P+I+ I G+ ++V++Y+RL+ L N+ L SF
Sbjct: 287 WAWTRAFLGIAADEIHLCGESSAIPIIESICLTIGEQLEVKTYKRLTKLEIENIALRSFC 346
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N+Q GDCIV F+++ I+ + AIE GK + +++YGSLPP T+ QA RFND + +L
Sbjct: 347 NVQAGDCIVCFNKNDIFTVSNAIEKLGKKV-AVIYGSLPPGTKLAQAARFNDPNDPCKIL 405
Query: 296 VASDAIGMGLNLNISRIIFST-----MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA++AIGMGLNL+I RIIF + + + +E+ ++V QIAGRAGRYG+++ G
Sbjct: 406 VATNAIGMGLNLHIRRIIFYSLTQPGLNEKGEIEVSLISVSSALQIAGRAGRYGTQWETG 465
Query: 351 EVTCLDSEDLPLLHKSLLEPSP-MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
VT EDL +L K LL+ +P +E AGL P D I +Y+ P++ L +++ F+
Sbjct: 466 FVTTFKYEDLNVL-KQLLQKTPDEIEQAGLHPTPDQIELYAYYLPNAPLSNLIDIFIALC 524
Query: 410 KLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+L ++ YF N ++ VA +I+ +PL L KY+FC +PV+ + L ++A SK
Sbjct: 525 RLDDSLYFICNLDDFKFVADMIEHIPLPLRTKYVFCCAPVNRKVPFTCNMLLKYARQCSK 584
Query: 469 KGIVQLR 475
+ ++
Sbjct: 585 NTPITIQ 591
>gi|332639893|pdb|3RC3|A Chain A, Human Mitochondrial Helicase Suv3
Length = 677
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 182/418 (43%), Positives = 265/418 (63%), Gaps = 10/418 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+ +
Sbjct: 138 SDLRIPPNWYPDARAXQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE 197
Query: 120 RLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG+ER V A H + TVE V + Y+ AVIDEIQ + RG
Sbjct: 198 KSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEXCSVTTPYEVAVIDEIQXIRDPARG 257
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+HLCG+PAA+ L+ ++ TG++V+V+ Y+RL+P+ L+ L S
Sbjct: 258 WAWTRALLGLCAEEVHLCGEPAAIDLVXELXYTTGEEVEVRDYKRLTPISVLDHALESLD 317
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND + +L
Sbjct: 318 NLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPNDPCKIL 376
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIG GLNL+I RIIF ++ K EL +T + QIAGRAGR+ S+F G
Sbjct: 377 VATDAIGXGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEG 436
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT + EDL LL + L P + +AGL P + I ++ PD++L +++ F++ ++
Sbjct: 437 EVTTXNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEXFAYHLPDATLSNLIDIFVDFSQ 496
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 497 VDGQYFVCNXDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 554
>gi|345309135|ref|XP_003428795.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase SUPV3L1,
mitochondrial-like [Ornithorhynchus anatinus]
Length = 778
Score = 353 bits (905), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 181/417 (43%), Positives = 263/417 (63%), Gaps = 9/417 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK+I H GPTNSGKT+ A+ R ++ SG+YCGPL+LLA E+ +
Sbjct: 164 SDLRLPPNWYPEARAIQRKIIFHSGPTNSGKTYHAIQRYLTAKSGVYCGPLKLLAHEIFE 223
Query: 120 RLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A + CDLITG+ER VD A H A TVEM V + Y+ AVIDEIQM+ +RG
Sbjct: 224 KSNNAGIPCDLITGEERVAVDPEGRQATHVACTVEMCSVTTPYEVAVIDEIQMIRDLSRG 283
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+H+CG+ AA+ L+ +++ TG++V+V++Y+RL+P L+ L S
Sbjct: 284 WAWTRALLGLCAEEIHVCGEAAAINLVTELMYTTGEEVEVRNYKRLTPFTVLDHALESLD 343
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N+Q GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND +L
Sbjct: 344 NLQPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLTQAKKFNDPDDPCKIL 402
Query: 296 VASDAIGMGLNLNISRIIFSTMK----KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGE 351
VA+DAIGMGLNL + RII T G +T + QIAGRAG + KF GE
Sbjct: 403 VATDAIGMGLNLXVKRIILXTPSSNCINEKGERDEPITTSQGLQIAGRAGEFSFKFKEGE 462
Query: 352 VTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKL 411
VT + ED LL + L P + +AGL P + I M++ PD++L +++ F+ +++
Sbjct: 463 VTTMYREDXXLLKEILNRPVEPMAAAGLHPTAEQIEMFAYQLPDATLSNLIDIFVSLSQV 522
Query: 412 SENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+YF N ++ +A +I +PL L +Y+FC +P++ L +FA YS+
Sbjct: 523 DGHYFVCNVDDFKFLADMIQHIPLNLRVRYVFCTAPINKKQPFVCTSLLKFARQYSR 579
>gi|160773213|gb|AAI55210.1| MGC162283 protein [Danio rerio]
Length = 718
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 177/418 (42%), Positives = 266/418 (63%), Gaps = 10/418 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK++ H GPTNSGKT+ A+ R + SG+YCGPL+LLA E+ +
Sbjct: 181 SDLRVPANWYPEARAIQRKIVFHAGPTNSGKTYHAIKRYLEAKSGVYCGPLKLLAHEIYE 240
Query: 120 RLNKANVSCDLITGQEREEVDG----AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG+ER VD + H A T+EM V + Y+ AVIDEIQM+ RG
Sbjct: 241 KSNAAGVPCDLVTGEERIFVDPEGKPSGHIASTIEMCSVTTPYEVAVIDEIQMIKDPARG 300
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+H+CG+ AAV I +++ TG++V+V +Y+RL+P N + S
Sbjct: 301 WAWTRALLGLCAEEIHVCGEAAAVDFITELMFTTGEEVEVHNYKRLTPFSISNHAVESLD 360
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE RG C+++YGSLPP T+ QA +FND +L
Sbjct: 361 NLKPGDCIVCFSKNDIYSISRQIEIRGLE-CAVIYGSLPPGTKLAQAKKFNDPDDPCKIL 419
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF+++ K E+ ++ + QIAGRAGR+ S F G
Sbjct: 420 VATDAIGMGLNLSIRRIIFNSLVKHSLNEKGEKEVDTISTSQALQIAGRAGRFSSVFKEG 479
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT + +DLP+L + L +P + +AGL P + I M++ P ++L +++ F+ ++
Sbjct: 480 EVTTMHRDDLPVLKEILGKPVDPIATAGLHPTAEQIEMFAYHLPQATLSNLIDIFVSLSQ 539
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N ++ +A +I +PL L +Y+FC +P++ +FA +S+
Sbjct: 540 VDGLYFVCNIDDFKFLADMIQHIPLNLRSRYVFCTAPINKKQPFVCTSFLKFARQFSR 597
>gi|134133261|ref|NP_001077033.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial precursor [Danio
rerio]
gi|160358711|sp|A4IG62.1|SUV3_DANRE RecName: Full=ATP-dependent RNA helicase SUPV3L1, mitochondrial;
AltName: Full=Suppressor of var1 3-like protein 1;
Short=SUV3-like protein 1; Flags: Precursor
gi|134024870|gb|AAI34946.1| MGC162283 protein [Danio rerio]
Length = 763
Score = 352 bits (903), Expect = 2e-94, Method: Compositional matrix adjust.
Identities = 177/418 (42%), Positives = 266/418 (63%), Gaps = 10/418 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK++ H GPTNSGKT+ A+ R + SG+YCGPL+LLA E+ +
Sbjct: 181 SDLRVPANWYPEARAIQRKIVFHAGPTNSGKTYHAIKRYLEAKSGVYCGPLKLLAHEIYE 240
Query: 120 RLNKANVSCDLITGQEREEVDG----AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG+ER VD + H A T+EM V + Y+ AVIDEIQM+ RG
Sbjct: 241 KSNAAGVPCDLVTGEERIFVDPEGKPSGHIASTIEMCSVTTPYEVAVIDEIQMIKDPARG 300
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+CA E+H+CG+ AAV I +++ TG++V+V +Y+RL+P N + S
Sbjct: 301 WAWTRALLGLCAEEIHVCGEAAAVDFITELMFTTGEEVEVHNYKRLTPFSISNHAVESLD 360
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE RG C+++YGSLPP T+ QA +FND +L
Sbjct: 361 NLKPGDCIVCFSKNDIYSISRQIEIRGLE-CAVIYGSLPPGTKLAQAKKFNDPDDPCKIL 419
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF+++ K E+ ++ + QIAGRAGR+ S F G
Sbjct: 420 VATDAIGMGLNLSIRRIIFNSLVKHSLNEKGEKEVDTISTSQALQIAGRAGRFSSVFKEG 479
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT + +DLP+L + L +P + +AGL P + I M++ P ++L +++ F+ ++
Sbjct: 480 EVTTMHRDDLPVLKEILGKPVDPIATAGLHPTAEQIEMFAYHLPQATLSNLIDIFVSLSQ 539
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N ++ +A +I +PL L +Y+FC +P++ +FA +S+
Sbjct: 540 VDGLYFVCNIDDFKFLADMIQHIPLNLRSRYVFCTAPINKKQPFVCTSFLKFARQFSR 597
>gi|346472467|gb|AEO36078.1| hypothetical protein [Amblyomma maculatum]
Length = 674
Score = 352 bits (902), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 187/419 (44%), Positives = 266/419 (63%), Gaps = 11/419 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RKVI H GPTNSGKTH AL R ++++SG+YCGPL++LA EV +
Sbjct: 119 SDLRLPANWYPEARAIQRKVIFHAGPTNSGKTHAALERFQTANSGLYCGPLKMLAVEVFQ 178
Query: 120 RLNKANVSCDLITGQEREEV--DG--AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N+ CDL+TG+ER DG A H A TVEMA V + YD AVIDEIQM+ RG
Sbjct: 179 KTNEKGTPCDLVTGEERRYALPDGQPASHVACTVEMATVHTPYDVAVIDEIQMMRDPQRG 238
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+ A E+HLCG+ AAV L++ +L G++++V+ Y+RL+ LV N L S
Sbjct: 239 WAWTRALLGLAAKEVHLCGEAAAVGLVRTLLASLGEELEVRKYKRLTQLVVENRALESLE 298
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
IQ GDCIV FS+ IY++ IE +G C+++YG LPP T+ QA +FND + VL
Sbjct: 299 KIQPGDCIVCFSKSDIYQVSLHIERQGLE-CAVIYGGLPPGTKLAQAHKFNDPAHPCKVL 357
Query: 296 VASDAIGMGLNLNISRIIFSTMKK-----FDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I R+IF ++ K +L ++ + QIAGRAGR+GS+F VG
Sbjct: 358 VATDAIGMGLNLSIGRVIFYSLVKPALNERGERQLDTISSSQALQIAGRAGRFGSRFEVG 417
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
VT + +DLP L + L P ++ AGL P + I +++ P ++L +++ F+ K
Sbjct: 418 RVTTMKPQDLPALKQILAAPVEQIQVAGLHPTAEQIELFAYHLPHATLANLVDIFVSLCK 477
Query: 411 L-SENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ + +YF N E +A +I +PL L +Y+FC SP++ +FA YS+
Sbjct: 478 VDASSYFMCNLEGFKFLADMIQHVPLPLRARYVFCCSPINQKMPFVCSMFLKFARQYSR 536
>gi|242046656|ref|XP_002400702.1| ATP-dependent RNA and DNA helicase, putative [Ixodes scapularis]
gi|215497634|gb|EEC07128.1| ATP-dependent RNA and DNA helicase, putative [Ixodes scapularis]
Length = 719
Score = 351 bits (900), Expect = 6e-94, Method: Compositional matrix adjust.
Identities = 184/419 (43%), Positives = 264/419 (63%), Gaps = 11/419 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR + RKV+ H GPTNSGKTH+AL ++ SG+YCGPL++LA EV
Sbjct: 166 SDLRLPANWYPDARSRQRKVVFHAGPTNSGKTHRALESFVNARSGLYCGPLKMLAVEVFN 225
Query: 120 RLNKANVSCDLITGQEREEV--DG--AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N+ CDL+TG+ER DG A H A TVEMA V YD AV+DEIQM+ RG
Sbjct: 226 KTNEKGTPCDLLTGEERRYARPDGQPADHLACTVEMAAVHCPYDVAVVDEIQMVRDPQRG 285
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+ A E+HLCG+ AA+PL+Q IL G++V+V+ Y+RL+PL N L S
Sbjct: 286 WAWTRALLGLNAEEVHLCGEEAALPLVQGILNSVGEEVEVRRYKRLTPLTVENRALESLD 345
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
++ GDC+V FS++ I+++ IE +G C+++YG LPP T+ QA++FND S +L
Sbjct: 346 QVRPGDCLVCFSKNDIFQVSLQIEKQGLE-CAVIYGGLPPGTKLAQASKFNDPSHPCKIL 404
Query: 296 VASDAIGMGLNLNISRIIFSTMKK-----FDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I R+IF ++ K E+ ++ + QIAGRAGR+GS+F G
Sbjct: 405 VATDAIGMGLNLSIGRVIFYSLVKPSLNERGEREMDTISTSQALQIAGRAGRFGSQFASG 464
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
T +DLPLL + L P +E+AGL P + I +++ P +SL +++ F+ K
Sbjct: 465 RATTFRPDDLPLLRQILAAPVERIEAAGLHPTAEQIELFAYHLPHASLANLVDIFVSLCK 524
Query: 411 LSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ + YF N E +A +I +PL L +Y+FC SP++ +FA YS+
Sbjct: 525 VDASAYFMCNLEAFKFLADMIQHVPLPLRARYVFCCSPINQKMPFVCSMFLKFARQYSR 583
>gi|312374358|gb|EFR21928.1| hypothetical protein AND_16014 [Anopheles darlingi]
Length = 766
Score = 348 bits (894), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 179/419 (42%), Positives = 265/419 (63%), Gaps = 11/419 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL +P WYP AR RKVI H GPTNSGKT+ A+ R S+ SG+YCGPL+LLA EV
Sbjct: 166 SDLRQPANWYPNARGMNRKVIFHSGPTNSGKTYHAMERFLSAKSGVYCGPLKLLASEVYN 225
Query: 120 RLNKANVSCDLITGQERE----EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N+ CDL+TG+ER+ E + H A TVEM + + Y+ AVIDEIQ+L RG
Sbjct: 226 KSNQRGTPCDLVTGEERKFANPEGKPSAHVACTVEMTSINTPYEVAVIDEIQLLKDVGRG 285
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRA LG+ A E+H+CG+P L+Q++ + T + ++V++Y+RL+P + L +
Sbjct: 286 WAWTRAFLGLMAEEIHVCGEPGTADLLQKLCETTHESMEVRNYKRLTPFHIEDQALITLD 345
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N+Q GDCIV FS++ IY + + IE+RGK + +++YG LPP T+ QA +FND ++ VL
Sbjct: 346 NVQPGDCIVCFSKNDIYSVSREIEARGKEV-AVIYGGLPPGTKLAQAAKFNDPNNSCKVL 404
Query: 296 VASDAIGMGLNLNISRIIF-----STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I R+IF TM + E+ ++V + QIAGRAGRYG K+ G
Sbjct: 405 VATDAIGMGLNLSIRRVIFYSMIKPTMNQKGEKEMDTISVSQALQIAGRAGRYGMKWEEG 464
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
VT +EDLP L L + L AGL P D+I +Y+ P+++L ++E F+ +
Sbjct: 465 FVTTFKAEDLPTLRGILAQTPEPLSQAGLHPTADMIELYAYHLPNATLSNLMEIFVSLST 524
Query: 411 LSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ ++ YF N E+ +A I +PL L +Y+FC +P++ N ++A YS+
Sbjct: 525 VDDSLYFMCNTEDFKFLAETIQHVPLPLRARYIFCCAPINRNMPFVCSMFLKYARRYSR 583
>gi|195109112|ref|XP_001999134.1| GI23236 [Drosophila mojavensis]
gi|193915728|gb|EDW14595.1| GI23236 [Drosophila mojavensis]
Length = 767
Score = 348 bits (892), Expect = 4e-93, Method: Compositional matrix adjust.
Identities = 187/457 (40%), Positives = 280/457 (61%), Gaps = 22/457 (4%)
Query: 22 DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVIL 81
D++ P+ L K + F +D + +KK +DL +P WYP AR RK++
Sbjct: 143 DDIFPYFLRHAKTM--FPHLDCM-------DDLKKI--SDLRQPANWYPNARAITRKIVF 191
Query: 82 HVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE---- 137
H GPTNSGKT+ A+ R S+ SG+YCGPL+LLA EV + N+ CDL+TG+ER+
Sbjct: 192 HAGPTNSGKTYHAMERYLSAKSGVYCGPLKLLATEVYNKANERGTPCDLVTGEERKFGIS 251
Query: 138 EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 197
+ A H A TVEM V + Y+ AVIDEIQ + + RG+++TRA LG+ A+E+H+CG+
Sbjct: 252 DTSPANHVACTVEMTSVNTPYEVAVIDEIQQIRDQQRGWAWTRAFLGLIADEVHVCGEAG 311
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
A+ L+++I + TG+ V+V+ Y+RL+ L + LGS N+ GDCIV FS++ IY + +
Sbjct: 312 ALELLEKICETTGETVEVRRYDRLTELTVEDSALGSLDNVMPGDCIVCFSKNDIYTVSRE 371
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF--- 314
IE+RGK + +++YG LPP T+ QA +FND S+ V+VA+DAIGMGLNL+I RIIF
Sbjct: 372 IEARGKEV-AVIYGGLPPGTKLAQAAKFNDPSNSCKVMVATDAIGMGLNLSIRRIIFYSL 430
Query: 315 --STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSP 372
TM + E+ ++V QIAGRAGRY +++ G VT SEDL L + L +
Sbjct: 431 VKPTMNERGEREIDTISVSSALQIAGRAGRYRTQWEHGYVTAFKSEDLQTLQRLLSQTPE 490
Query: 373 MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVID 431
L+ AGL P D I +Y+ P+SSL +++ F+ + ++ YF N E+ +A +I+
Sbjct: 491 PLKQAGLHPTADQIELYAYHLPNSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIN 550
Query: 432 QLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+PL L +Y+FC +P++ + A YS+
Sbjct: 551 HVPLPLRARYVFCCAPINRKMPFVCSMFLKIARQYSR 587
>gi|195343379|ref|XP_002038275.1| GM10744 [Drosophila sechellia]
gi|194133296|gb|EDW54812.1| GM10744 [Drosophila sechellia]
Length = 620
Score = 348 bits (892), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 188/457 (41%), Positives = 277/457 (60%), Gaps = 22/457 (4%)
Query: 22 DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVIL 81
D++ P+ L K + F +D + +KK +DL +P WY AR RK++
Sbjct: 143 DDIFPYFLRHAKTV--FPHLDCM-------DDLKKI--SDLRQPANWYSNARAITRKIVF 191
Query: 82 HVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE---- 137
H GPTNSGKT+ A+ R S+ SG+YCGPL+LLA EV + N+ CDL+TG+ER+
Sbjct: 192 HAGPTNSGKTYHAMERYLSAKSGVYCGPLKLLATEVYNKANERGTPCDLVTGEERKFGIS 251
Query: 138 EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 197
E A H A TVEM V + Y+ AVIDEIQ + RG+++TRA LG+ A+E+H+CG+P
Sbjct: 252 ENSPANHVACTVEMTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLIADEVHVCGEPG 311
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
A+ L+Q+I + TG+ V+V+ Y+RL+ L N LGS NI GDCIV FS+H IY + +
Sbjct: 312 ALDLLQKICETTGETVEVRRYDRLTELTVENTALGSLDNIVPGDCIVCFSKHDIYTVSRE 371
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF--- 314
IE+RGK + +++YG LPP T+ QA +FND ++ V+VA+DAIGMGLNL+I RIIF
Sbjct: 372 IEARGKEV-AVIYGGLPPGTKLAQAAKFNDPANSCKVMVATDAIGMGLNLSIRRIIFYSL 430
Query: 315 --STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSP 372
+M + E+ ++V QIAGRAGR+ +++ G VT SEDL L + L +
Sbjct: 431 IKPSMNERGEREIDTISVSSALQIAGRAGRFRTQWEHGYVTAFKSEDLQTLQRILAQTPE 490
Query: 373 MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVID 431
++ AGL P D I +Y+ P SSL +++ F+ + ++ YF N E+ +A +I
Sbjct: 491 PIKQAGLHPTADQIELYAYHLPSSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQ 550
Query: 432 QLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+PL L +Y+FC +P++ + A YS+
Sbjct: 551 HVPLPLRARYVFCCAPINRKMPFVCSMFLKVARQYSR 587
>gi|194898433|ref|XP_001978803.1| GG12286 [Drosophila erecta]
gi|190650506|gb|EDV47761.1| GG12286 [Drosophila erecta]
Length = 712
Score = 348 bits (892), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 187/457 (40%), Positives = 278/457 (60%), Gaps = 22/457 (4%)
Query: 22 DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVIL 81
D++ P+ L K + F +D + +KK +DL +P WY AR RK++
Sbjct: 97 DDIFPYFLRHAKTV--FPHLDCM-------DDLKKI--SDLRQPANWYSNARAITRKIVF 145
Query: 82 HVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE---- 137
H GPTNSGKT+ A+ R S+ SG+YCGPL+LLA EV + N+ CDL+TG+ER+
Sbjct: 146 HAGPTNSGKTYHAMERYLSAKSGVYCGPLKLLATEVYNKANERGTPCDLVTGEERKFGIS 205
Query: 138 EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 197
E A H A TVEM V + Y+ AVIDEIQ + RG+++TRA LG+ A+E+H+CG+P
Sbjct: 206 EGSPANHVACTVEMTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLIADEVHVCGEPG 265
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
A+ L+Q+I + TG+ V+V+ Y+RL+ L N LGS N+ +GDCIV FS+H IY + +
Sbjct: 266 ALNLLQKICETTGETVEVRRYDRLTELTVENTALGSLDNVVSGDCIVCFSKHDIYTVSRE 325
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF--- 314
IE+RGK + +++YG LPP T+ QA +FND ++ V+VA+DAIGMGLNL+I RIIF
Sbjct: 326 IEARGKEV-AVIYGGLPPGTKLAQAAKFNDPTNSCKVMVATDAIGMGLNLSIRRIIFYSL 384
Query: 315 --STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSP 372
+M + E+ ++V QIAGRAGR+ +++ G VT +EDL L + L +
Sbjct: 385 IKPSMNERGEREIDTISVSSALQIAGRAGRFRTQWEHGYVTAFKTEDLQTLQQILAQTPE 444
Query: 373 MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVID 431
L+ AGL P D I +Y+ P SSL +++ F+ + ++ YF N E+ +A +I
Sbjct: 445 PLKQAGLHPTADQIELYAYHLPSSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQ 504
Query: 432 QLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+PL L +Y+FC +P++ + A YS+
Sbjct: 505 HVPLPLRARYVFCCAPINRKMPFVCSMFLKVARQYSR 541
>gi|307214392|gb|EFN89463.1| ATP-dependent RNA helicase SUV3-like protein, mitochondrial
[Harpegnathos saltator]
Length = 750
Score = 348 bits (892), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 183/424 (43%), Positives = 272/424 (64%), Gaps = 13/424 (3%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYPLAR K RK+I H GPTNSGKT+ AL R ++ SG+YCGPL+LL EV +
Sbjct: 248 SDLRSPANWYPLARAKNRKIIFHAGPTNSGKTYHALERFINAKSGVYCGPLKLLVGEVFQ 307
Query: 120 RLNKANVSCDLITGQEREEVDG----AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N+ CDL+TG+ER G + H + +VEM ++ S+Y+ AVIDEIQ++ RG
Sbjct: 308 KCNQNGTPCDLLTGEERTYAKGLDNPSNHLSCSVEMVNLQSNYEVAVIDEIQLMRDLNRG 367
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLGI A+E+HLCG+ AA+ L++ I TG+DV+++ Y+RL+ L N LGS +
Sbjct: 368 WAWTRALLGIPADEIHLCGEAAAIDLVKAICLSTGEDVEIRRYKRLTQLEIENQALGSLN 427
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N+Q GDCIV F+++ I+ + +++ESRG + +++YGSLPP T+ QA +FND + VL
Sbjct: 428 NVQPGDCIVCFNKNDIFTVSRSLESRGIEV-AVIYGSLPPGTKLAQAAKFNDPKNSCKVL 486
Query: 296 VASDAIGMGLNLNISRIIFSTM-----KKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA++AIGMGLNL+I RIIF ++ + E+ L+V QIAGRAGRYG+ + G
Sbjct: 487 VATNAIGMGLNLHIRRIIFYSLIQPSINEKGEKEMDVLSVSATLQIAGRAGRYGTAWTTG 546
Query: 351 EVTCLDSEDLPLLHKSLLEPSP-MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
VT EDL L K LL+ +P ++ AGL P D I +Y+ P+S L +++ F+ +
Sbjct: 547 YVTTFKQEDLRTL-KDLLDQTPEIITQAGLHPTADQIELYAYHLPNSPLSNLMDIFVSLS 605
Query: 410 KLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ + YF N ++ +A +I +PL L +Y+FC +P++ +FA YSK
Sbjct: 606 TVDNSLYFMCNLDDFKFLADMIQHVPLPLRARYVFCCAPINKKSPYVCAMFLKFARQYSK 665
Query: 469 KGIV 472
+
Sbjct: 666 NDAI 669
>gi|195568145|ref|XP_002102078.1| GD19716 [Drosophila simulans]
gi|194198005|gb|EDX11581.1| GD19716 [Drosophila simulans]
Length = 758
Score = 347 bits (891), Expect = 6e-93, Method: Compositional matrix adjust.
Identities = 188/457 (41%), Positives = 277/457 (60%), Gaps = 22/457 (4%)
Query: 22 DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVIL 81
D++ P+ L K + F +D + +KK +DL +P WY AR RK++
Sbjct: 143 DDIFPYFLRHAKTV--FPHLDCM-------DDLKKI--SDLRQPANWYSNARAITRKIVF 191
Query: 82 HVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE---- 137
H GPTNSGKT+ A+ R S+ SG+YCGPL+LLA EV + N+ CDL+TG+ER+
Sbjct: 192 HAGPTNSGKTYHAMERYLSAKSGVYCGPLKLLATEVYNKANERGTPCDLVTGEERKFGIS 251
Query: 138 EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 197
E A H A TVEM V + Y+ AVIDEIQ + RG+++TRA LG+ A+E+H+CG+P
Sbjct: 252 ENSPANHVACTVEMTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLIADEVHVCGEPG 311
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
A+ L+Q+I + TG+ V+V+ Y+RL+ L N LGS NI GDCIV FS+H IY + +
Sbjct: 312 ALDLLQKICETTGETVEVRRYDRLTELTVENTALGSLDNIVPGDCIVCFSKHDIYTVSRE 371
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF--- 314
IE+RGK + +++YG LPP T+ QA +FND ++ V+VA+DAIGMGLNL+I RIIF
Sbjct: 372 IEARGKEV-AVIYGGLPPGTKLAQAAKFNDPANSCKVMVATDAIGMGLNLSIRRIIFYSL 430
Query: 315 --STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSP 372
+M + E+ ++V QIAGRAGR+ +++ G VT SEDL L + L +
Sbjct: 431 IKPSMNERGEREIDTISVSSALQIAGRAGRFRTQWEHGYVTAFKSEDLQTLQRILAQTPE 490
Query: 373 MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVID 431
++ AGL P D I +Y+ P SSL +++ F+ + ++ YF N E+ +A +I
Sbjct: 491 PIKQAGLHPTADQIELYAYHLPSSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQ 550
Query: 432 QLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+PL L +Y+FC +P++ + A YS+
Sbjct: 551 HVPLPLRARYVFCCAPINRKMPFVCSMFLKVARQYSR 587
>gi|330800084|ref|XP_003288069.1| hypothetical protein DICPUDRAFT_33488 [Dictyostelium purpureum]
gi|325081893|gb|EGC35393.1| hypothetical protein DICPUDRAFT_33488 [Dictyostelium purpureum]
Length = 519
Score = 347 bits (890), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 183/412 (44%), Positives = 267/412 (64%), Gaps = 6/412 (1%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
DL PH WYP AR RK ILH GPTNSGKTH AL RL+S+ SG+YCGPLRLLA EV +
Sbjct: 24 ADLKEPHLWYPEARAIKRKFILHTGPTNSGKTHHALERLKSADSGVYCGPLRLLAQEVYE 83
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
+L + V C ++TGQ R AKH + T+E+A+ + AVIDE Q++ RG +T
Sbjct: 84 KLADSGVECSMLTGQIRIVNPNAKHISCTIELANTEEMVEVAVIDEFQLISDSDRGLYWT 143
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQT 239
RA+LGI A E+HLCGD ++ LI++I ++TGD ++++YERLSPL P S S +Q
Sbjct: 144 RAILGIPALEIHLCGDGSSKELIRKICEITGDSYELRTYERLSPLEIEERP-ASISKLQK 202
Query: 240 GDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD 299
GDC+VTFS+ LK+ +ES+GK C+IVYGSLPP R ++A RFND + + ++L+A+D
Sbjct: 203 GDCLVTFSKKECIELKQQMESKGKR-CAIVYGSLPPIIRLQEAKRFND-TDDAEILIATD 260
Query: 300 AIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKF-PVGEVTCLDSE 358
IGMGLNLNISR+IF++ K+DG + R L PE++QIAGRAGR+ S F G+V+ D
Sbjct: 261 CIGMGLNLNISRVIFTSTFKYDGRDFRKLKSPELRQIAGRAGRFKSDFNSCGKVSAFDRT 320
Query: 359 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMY-SRLHPDSSLYG-ILEHFLENAKLSENYF 416
L + K+ + AGLFP + + ++ + +S+ + IL+ F+ ++ + ++YF
Sbjct: 321 GLDHIRKAFAAREEENKRAGLFPPAEQLELFGENIAKNSTKFSEILKSFVLSSNIDQHYF 380
Query: 417 FANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ L +A +D++ + + +KYLF SP ++ + L FA +YS+
Sbjct: 381 LCYFDRFLIIAEHLDEIKMSIPDKYLFICSPFQIHRKKAMFFLKSFAFDYSE 432
>gi|290980456|ref|XP_002672948.1| predicted protein [Naegleria gruberi]
gi|284086528|gb|EFC40204.1| predicted protein [Naegleria gruberi]
Length = 773
Score = 347 bits (889), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 189/422 (44%), Positives = 261/422 (61%), Gaps = 15/422 (3%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DLT PH YPL R K RK+I H+GPTNSGKT+ A L ++ +GIYC PLRLLA E +
Sbjct: 230 DLTEPHQLYPLTRLKKRKIIFHIGPTNSGKTYSAFQALRNAKTGIYCAPLRLLATEAYVK 289
Query: 121 LNKAN---VSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
L + +C LITG + EV+ A H T EMAD+ S+ D AVIDEIQ++ RG+S
Sbjct: 290 LTSGDNPLSTCQLITGDFKIEVENATHTCSTTEMADISSEIDVAVIDEIQLITDPDRGWS 349
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-VPLNVPLGSFSN 236
+T+ALLG+ ANE+HLCG+ + LI+++ Q TGD+++V+ Y RL+ L + L SF++
Sbjct: 350 WTKALLGVRANEVHLCGEGRVLKLIEKLCQDTGDELEVKEYNRLTKLNITKQATLKSFND 409
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296
++ GDCIV FSR ++R+K IE +VYG LPP+TR QA FN S +DVLV
Sbjct: 410 LEKGDCIVCFSRKEVFRMKNEIEKSTNLRVCVVYGGLPPQTRIIQAALFNHERSPYDVLV 469
Query: 297 ASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 356
A+DAIGMGLNLNI R+IFS +KFDG E+R LT E+KQI GRAGR+ S F GEVT
Sbjct: 470 ATDAIGMGLNLNIRRVIFSATEKFDGKEVRTLTPHEIKQIGGRAGRFNSAFEEGEVTSFR 529
Query: 357 SEDLPLLHKSLLEPSPMLES----AGLFPNFDLIYMYSRLHPDSS----LYGILEHFLEN 408
+ D ++H++ P LE AGLFP + I +SR + + L IL F E
Sbjct: 530 NGDCKVIHQA-FSYDPTLEEEALRAGLFPTDEQIDHFSRQFDNENHRVRLSTILAKFYEI 588
Query: 409 AKLSE-NYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNY 466
++++ YF EE +A +I + L E+ +F SP+D ++ + ++A Y
Sbjct: 589 TQVNKGKYFMCEIEEKKDIANIIHPIENLTTAERMIFVKSPIDPDESLCKDMAFKWAKLY 648
Query: 467 SK 468
S+
Sbjct: 649 SE 650
>gi|452825753|gb|EME32748.1| ATP-dependent RNA helicase (mitochondrial) [Galdieria sulphuraria]
Length = 739
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 181/419 (43%), Positives = 266/419 (63%), Gaps = 13/419 (3%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
++ DL PH +P ARK+ RK++ H GPTNSGKT+ A+ RL+S+ +G+Y GPLRLLAWE
Sbjct: 205 EYADLRLPHLLFPEARKRRRKIVYHFGPTNSGKTYFAMERLKSAKNGVYAGPLRLLAWEA 264
Query: 118 AKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
+++N V +L+TG+E++ + A H A T+EM +Y+ AV+DEIQM+G RG+S
Sbjct: 265 FEKMNADGVFTNLMTGEEKKIIPFASHIACTIEMLSTEEEYEVAVLDEIQMIGDAQRGWS 324
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSN 236
+TR LLG+ A+E+H+CGDP+ L++Q+ Q GD+ + + Y R + L L G +
Sbjct: 325 WTRGLLGVQASEVHVCGDPSTKELLKQLAQRCGDEFEEKEYFRQTSLEISRKSLNGDLNK 384
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296
+Q GD IV FSR +Y K +E C ++YGSLPPETR+ QA FND SE+ +LV
Sbjct: 385 LQDGDTIVVFSRRDVYETKYRVEQTTGKRCCVIYGSLPPETRSYQARLFNDPESEYKILV 444
Query: 297 ASDAIGMGLNLNISRIIFSTMKKFDGV----ELRDLTVPEVKQIAGRAGRYGSKFPVGEV 352
A+DAIGMGLNLNI RIIF++++KF G+ L+ ++QIAGRAGR S +P GE
Sbjct: 445 ATDAIGMGLNLNIKRIIFASLEKFHGLSSSARKEPLSFALIRQIAGRAGRAFSIYPHGEA 504
Query: 353 TCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS-SLYGILEHFLENAKL 411
TCL D+P L ++ P ++SAGL P D + +++ + D+ L +L+ F E AKL
Sbjct: 505 TCLYEHDIPRLQEAFQGSVPSIDSAGLMPTLDQMELFASVVGDNVKLSTLLDLFAEYAKL 564
Query: 412 SENYFFANCE----EVLKVATVIDQL-PLRLHEKYLFCISPVDMNDDISSQGLTQFATN 465
F+ CE E+ ++A ++ Q L L E++ FC +PV+++D + L FA N
Sbjct: 565 DN--LFSLCEQKFLEMRRIARLLQQAGTLSLKEQFEFCQAPVNISDPFLMKYLLSFAKN 621
>gi|427779903|gb|JAA55403.1| Putative mitochondrial rna helicase suv3 dead-box superfamily
[Rhipicephalus pulchellus]
Length = 716
Score = 346 bits (888), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 184/420 (43%), Positives = 263/420 (62%), Gaps = 11/420 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP AR RKVI H GPTNSGKTH AL +S++G+YCGPL++LA EV
Sbjct: 155 ISDLRHPGNWYPEARAIQRKVIFHAGPTNSGKTHAALESFHNSNTGLYCGPLKMLAVEVF 214
Query: 119 KRLNKANVSCDLITGQEREEV--DG--AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N+ CDL+TG+ER V DG A H A TVEMA V + YD AVIDEIQM+ R
Sbjct: 215 QKTNEKGTPCDLVTGEERRCVLPDGQPAPHVACTVEMAAVHTPYDVAVIDEIQMMRDPQR 274
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+ A ELHLCG+ AA+ L++ +L G++++V+ Y+RL+ L N L S
Sbjct: 275 GWAWTRALLGLAAKELHLCGEAAAIGLVRNLLSSLGEELEVRKYKRLTQLTIENRALESL 334
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
IQ GDC+V F++ IY++ IE +G C+++YG LPP T+ QA +FND S V
Sbjct: 335 EKIQPGDCVVCFNKSDIYQVSLQIERQGLE-CAVIYGGLPPGTKLAQAQKFNDPSHPCKV 393
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVE-----LRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I R+IF ++ K E + ++ + QIAGRAGR+GS++ V
Sbjct: 394 LVATDAIGMGLNLSIGRVIFYSLVKPSLNERGERQMDTISTSQALQIAGRAGRFGSRYEV 453
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
G T + +DLP L + L +E+AGL P + I +++ P ++L +++ F+
Sbjct: 454 GRATTMKPQDLPALKQILAASVEQIEAAGLHPTAEQIELFAYHLPHATLANLVDIFVSLC 513
Query: 410 KL-SENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
K+ S +YF N E +A +I +PL L +Y+FC SP++ +FA YS+
Sbjct: 514 KVDSSSYFMCNLEGFKFLADMIQHVPLPLRARYVFCCSPINQKMPFVCSMFLKFARQYSR 573
>gi|427779183|gb|JAA55043.1| Putative mitochondrial rna helicase suv3 dead-box superfamily
[Rhipicephalus pulchellus]
Length = 689
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 184/420 (43%), Positives = 263/420 (62%), Gaps = 11/420 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP AR RKVI H GPTNSGKTH AL +S++G+YCGPL++LA EV
Sbjct: 155 ISDLRHPGNWYPEARAIQRKVIFHAGPTNSGKTHAALESFHNSNTGLYCGPLKMLAVEVF 214
Query: 119 KRLNKANVSCDLITGQEREEV--DG--AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N+ CDL+TG+ER V DG A H A TVEMA V + YD AVIDEIQM+ R
Sbjct: 215 QKTNEKGTPCDLVTGEERRCVLPDGQPAPHVACTVEMAAVHTPYDVAVIDEIQMMRDPQR 274
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+ A ELHLCG+ AA+ L++ +L G++++V+ Y+RL+ L N L S
Sbjct: 275 GWAWTRALLGLAAKELHLCGEAAAIGLVRNLLSSLGEELEVRKYKRLTQLTIENRALESL 334
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
IQ GDC+V F++ IY++ IE +G C+++YG LPP T+ QA +FND S V
Sbjct: 335 EKIQPGDCVVCFNKSDIYQVSLQIERQGLE-CAVIYGGLPPGTKLAQAQKFNDPSHPCKV 393
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVE-----LRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I R+IF ++ K E + ++ + QIAGRAGR+GS++ V
Sbjct: 394 LVATDAIGMGLNLSIGRVIFYSLVKPSLNERGERQMDTISTSQALQIAGRAGRFGSRYEV 453
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
G T + +DLP L + L +E+AGL P + I +++ P ++L +++ F+
Sbjct: 454 GRATTMKPQDLPALKQILAASVEQIEAAGLHPTAEQIELFAYHLPHATLANLVDIFVSLC 513
Query: 410 KL-SENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
K+ S +YF N E +A +I +PL L +Y+FC SP++ +FA YS+
Sbjct: 514 KVDSSSYFMCNLEGFKFLADMIQHVPLPLRARYVFCCSPINQKMPFVCSMFLKFARQYSR 573
>gi|427788961|gb|JAA59932.1| Putative mitochondrial rna helicase suv3 dead-box superfamily
[Rhipicephalus pulchellus]
Length = 679
Score = 346 bits (887), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 184/420 (43%), Positives = 263/420 (62%), Gaps = 11/420 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP AR RKVI H GPTNSGKTH AL +S++G+YCGPL++LA EV
Sbjct: 118 ISDLRHPGNWYPEARAIQRKVIFHAGPTNSGKTHAALESFHNSNTGLYCGPLKMLAVEVF 177
Query: 119 KRLNKANVSCDLITGQEREEV--DG--AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N+ CDL+TG+ER V DG A H A TVEMA V + YD AVIDEIQM+ R
Sbjct: 178 QKTNEKGTPCDLVTGEERRCVLPDGQPAPHVACTVEMAAVHTPYDVAVIDEIQMMRDPQR 237
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+ A ELHLCG+ AA+ L++ +L G++++V+ Y+RL+ L N L S
Sbjct: 238 GWAWTRALLGLAAKELHLCGEAAAIGLVRNLLSSLGEELEVRKYKRLTQLTIENRALESL 297
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
IQ GDC+V F++ IY++ IE +G C+++YG LPP T+ QA +FND S V
Sbjct: 298 EKIQPGDCVVCFNKSDIYQVSLQIERQGLE-CAVIYGGLPPGTKLAQAQKFNDPSHPCKV 356
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVE-----LRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I R+IF ++ K E + ++ + QIAGRAGR+GS++ V
Sbjct: 357 LVATDAIGMGLNLSIGRVIFYSLVKPSLNERGERQMDTISTSQALQIAGRAGRFGSRYEV 416
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
G T + +DLP L + L +E+AGL P + I +++ P ++L +++ F+
Sbjct: 417 GRATTMKPQDLPALKQILAASVEQIEAAGLHPTAEQIELFAYHLPHATLANLVDIFVSLC 476
Query: 410 KL-SENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
K+ S +YF N E +A +I +PL L +Y+FC SP++ +FA YS+
Sbjct: 477 KVDSSSYFMCNLEGFKFLADMIQHVPLPLRARYVFCCSPINQKMPFVCSMFLKFARQYSR 536
>gi|157116275|ref|XP_001658414.1| ATP-dependent RNA and DNA helicase [Aedes aegypti]
gi|108876556|gb|EAT40781.1| AAEL007512-PA [Aedes aegypti]
Length = 745
Score = 345 bits (885), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 177/419 (42%), Positives = 265/419 (63%), Gaps = 11/419 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL +P WYP AR R++I H GPTNSGKT+ A+ R S+ SG+YCGPL+LLA EV
Sbjct: 160 SDLRQPANWYPSARAINRRIIFHSGPTNSGKTYHAMERFMSAKSGVYCGPLKLLASEVYN 219
Query: 120 RLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N+ CDL+TG+ER+ D +KH A TVEM + + Y+ AVIDEIQ+L RG
Sbjct: 220 KSNQRGTPCDLVTGEERKFADPNGNASKHVACTVEMTSITTPYEVAVIDEIQLLKDVGRG 279
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+ A E+H+CG+P + L+Q+I T ++++V++Y+RL+ L + L +
Sbjct: 280 WAWTRALLGLMAEEIHVCGEPGTLDLLQKICDTTNEELEVRNYKRLTALHIEDQALQTLD 339
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE+RG+ + +++YG LPP T+ QA +FND + VL
Sbjct: 340 NVRPGDCIVCFSKNDIYSVSREIEARGREV-AVIYGGLPPGTKLAQAAKFNDPENSCKVL 398
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I R+IF ++ K E+ ++V + QIAGRAGRYG K+ G
Sbjct: 399 VATDAIGMGLNLSIRRVIFYSIIKPSVNQKGEKEMDTISVSQALQIAGRAGRYGMKWDEG 458
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
VT EDLP L L + L AGL P D+I +Y+ P+++L ++E F+ +
Sbjct: 459 YVTTYKPEDLPTLKNILGQTPDPLTQAGLHPTADMIELYAYHLPNATLSNLMEIFVSLST 518
Query: 411 LSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ ++ YF N E+ +A I +PL L +Y+FC +P++ ++A YSK
Sbjct: 519 VDDSLYFMCNTEDFKFLAETIQHVPLPLRARYIFCCAPINRQMPFVCSMFLKYARRYSK 577
>gi|347970020|ref|XP_309651.5| AGAP003508-PA [Anopheles gambiae str. PEST]
gi|333466653|gb|EAA05399.5| AGAP003508-PA [Anopheles gambiae str. PEST]
Length = 819
Score = 345 bits (884), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 178/419 (42%), Positives = 264/419 (63%), Gaps = 11/419 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL +P WYP AR RKVI H GPTNSGKT+ A+ R ++ SG+YCGPL+LLA EV
Sbjct: 173 SDLRQPANWYPSARGMNRKVIFHSGPTNSGKTYHAMERFLAAKSGVYCGPLKLLASEVYN 232
Query: 120 RLNKANVSCDLITGQERE----EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N+ +CDL+TG+ER+ E + H A TVEM + + Y+ AVIDEIQ+L RG
Sbjct: 233 KSNQRGTACDLVTGEERKFANPEGKPSAHVACTVEMTSINTPYEVAVIDEIQLLKDVGRG 292
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRA LG+ A E+H+CG+P L+Q++ + T + ++V++Y+RL+PL L +
Sbjct: 293 WAWTRAFLGLMAEEIHVCGEPGTADLLQKLCETTHESLEVRNYKRLTPLHIEEQALQTLD 352
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N+ GDCIV FS++ IY + + IE+RGK + +++YG LPP T+ QA +FND ++ VL
Sbjct: 353 NVLPGDCIVCFSKNDIYAVSREIEARGKEV-AVIYGGLPPGTKLAQAAKFNDPNNSCKVL 411
Query: 296 VASDAIGMGLNLNISRIIF-----STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I R+IF TM + E+ ++V QIAGRAGRYG K+ G
Sbjct: 412 VATDAIGMGLNLSIRRVIFYSMIKPTMNQKGEKEMDTISVSAALQIAGRAGRYGMKWEEG 471
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
VT +EDLP L L + L AGL P D+I +Y+ P+++L ++E F+ +
Sbjct: 472 YVTTFKAEDLPTLKGILGQTPDPLTQAGLHPTADMIELYAYHLPNATLSNLMEIFVSLST 531
Query: 411 LSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ ++ YF N E+ +A I +PL L +Y+FC +P++ N ++A YS+
Sbjct: 532 VDDSLYFMCNTEDFKFLAETIQHVPLPLRARYIFCCAPINRNMPFVCSMFLKYARRYSR 590
>gi|194743614|ref|XP_001954295.1| GF18203 [Drosophila ananassae]
gi|190627332|gb|EDV42856.1| GF18203 [Drosophila ananassae]
Length = 763
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 185/457 (40%), Positives = 277/457 (60%), Gaps = 22/457 (4%)
Query: 22 DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVIL 81
D++ P+ L K + F +D + +KK +DL +P WY AR RK++
Sbjct: 143 DDIFPYFLRHAKTV--FPHLDCM-------DDLKKI--SDLRQPANWYTNARAITRKIVF 191
Query: 82 HVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE---- 137
H GPTNSGKT+ A+ R ++ SG+YCGPL+LLA EV + N+ CDL+TG+ER+
Sbjct: 192 HAGPTNSGKTYHAMERYLTAKSGVYCGPLKLLATEVFNKANERGTPCDLVTGEERKFGIS 251
Query: 138 EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 197
E A H A TVEM V + Y+ AVIDEIQ + RG+++TRA LG+ A E+H+CG+
Sbjct: 252 ESSPANHVACTVEMTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLIAEEVHVCGEAG 311
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
++ L+++I + TG+ V+V+ Y+RL+ L N LGS N+ GDCIV FS+H IY + +
Sbjct: 312 SLGLLEKICETTGETVEVRRYDRLTELTVENTALGSLDNVVPGDCIVCFSKHDIYTVSRE 371
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF--- 314
IE+RGK + +++YG LPP T+ QA +FND ++ V+VA+DAIGMGLNL+I RIIF
Sbjct: 372 IEARGKEV-AVIYGGLPPGTKLAQAAKFNDPANSCKVMVATDAIGMGLNLSIRRIIFYSL 430
Query: 315 --STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSP 372
TM + E+ ++V QIAGRAGR+ +++ G VT EDL +LH+ L +
Sbjct: 431 VKPTMNEKGEREIDTISVSSALQIAGRAGRFRTQWEHGYVTAFKPEDLQILHRILSQTPD 490
Query: 373 MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVID 431
L+ AGL P D I +Y+ P+SSL +++ F+ + ++ YF N E+ +A +I
Sbjct: 491 PLKQAGLHPTADQIELYAYHLPNSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQ 550
Query: 432 QLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+PL L +Y+FC +P++ + A YS+
Sbjct: 551 HVPLPLRARYVFCCAPINRKMPFVCSMFLKIARQYSR 587
>gi|125777467|ref|XP_001359616.1| GA22038 [Drosophila pseudoobscura pseudoobscura]
gi|121989826|sp|Q295E6.1|SUV3_DROPS RecName: Full=ATP-dependent RNA helicase SUV3 homolog,
mitochondrial; Flags: Precursor
gi|54639364|gb|EAL28766.1| GA22038 [Drosophila pseudoobscura pseudoobscura]
Length = 762
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 185/457 (40%), Positives = 277/457 (60%), Gaps = 22/457 (4%)
Query: 22 DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVIL 81
D++ P+ L K + F +D + +KK +DL +P WY AR RK++
Sbjct: 143 DDIFPYFLRHAKTV--FPHLDCM-------DDLKKI--SDLRQPANWYTNARALTRKIVF 191
Query: 82 HVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE---- 137
H GPTNSGKT+ A+ R S+ +G+YCGPL+LLA EV + N+ CDL+TG+ER+
Sbjct: 192 HSGPTNSGKTYHAMERYLSAKTGVYCGPLKLLATEVYNKANERGTPCDLVTGEERKFGIS 251
Query: 138 EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 197
+ A H A TVEM V + Y+ AVIDEIQ + RG+++TRA LG+ A+E+H+CG+
Sbjct: 252 DNSPANHVACTVEMTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLIADEVHVCGEAG 311
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
A+ L+Q+I + TG+ V+V+ Y+RL+ L + LGS N+ GDCIV FS+H IY + +
Sbjct: 312 ALELLQKICETTGETVEVRRYDRLTELTVEDSALGSLDNVMPGDCIVCFSKHDIYTVSRE 371
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF--- 314
IE+RGK + +++YG LPP T+ QA +FND ++ V+VA+DAIGMGLNL+I RIIF
Sbjct: 372 IEARGKEV-AVIYGGLPPGTKLAQAAKFNDPANSCKVMVATDAIGMGLNLSIRRIIFYSL 430
Query: 315 --STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSP 372
TM + E+ ++V QIAGRAGR+ +++ G VT SEDL L + L +
Sbjct: 431 VKPTMNERGEREIDTISVSSALQIAGRAGRFRTQWEHGYVTAFKSEDLQTLQRILAQTPE 490
Query: 373 MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVID 431
L+ AGL P D I +Y+ P+SSL +++ F+ + ++ YF N E+ +A +I
Sbjct: 491 PLKQAGLHPTADQIELYAYHLPNSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQ 550
Query: 432 QLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+PL L +Y+FC +P++ + A YS+
Sbjct: 551 HVPLPLRARYVFCCAPINRKMPFVCSMFLKIARQYSR 587
>gi|324504471|gb|ADY41932.1| ATP-dependent RNA helicase SUV3 [Ascaris suum]
Length = 781
Score = 343 bits (879), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 174/415 (41%), Positives = 264/415 (63%), Gaps = 11/415 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DLT+PH WYP AR R++I H GPTNSGKT++AL R + SG+YCGPL+LLA EV
Sbjct: 198 ISDLTQPHNWYPEARTIHRRIIFHAGPTNSGKTYEALKRFREAKSGVYCGPLKLLASEVF 257
Query: 119 KRLNKANVSCDLITGQERE-EVDG---AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
R N+ V CD++TG+ER +D + H + TVEM D AVIDEIQML + R
Sbjct: 258 FRTNEQGVKCDMVTGEERRYAIDNRHPSAHLSSTVEMLSTQMHVDVAVIDEIQMLRDEQR 317
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+ A+E+HLCG+ +A+ +++++L G+ V+V Y+R + L LG+
Sbjct: 318 GWAWTRALLGVAADEVHLCGEASAINIVRELLNPIGEHVEVHEYKRKTSLSLAPHALGTL 377
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N+Q GDCIV FSR AI+ + K +E G +++YG LPP T+ QA +FND + +V
Sbjct: 378 DNVQDGDCIVCFSRRAIFSVTKQLEKIGVK-PAVIYGDLPPGTKLSQAGKFNDPNDATNV 436
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK--QIAGRAGRYGSKFPVGEV 352
LVA+DAIGMGLNLNI RIIF ++ + EL +P QIAGRAGR+G+ + G+V
Sbjct: 437 LVATDAIGMGLNLNIRRIIFYSLIRPPNGEL----IPNYAALQIAGRAGRFGTVYEEGKV 492
Query: 353 TCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLS 412
+ ED+ +L + L +P +ES G+ P F+ + +S P++S +L+ F+ ++
Sbjct: 493 MTVREEDMGILKEILSQPVSPIESVGIAPTFEQLETFSFHLPNASFINLLDIFVSVCSIT 552
Query: 413 ENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYS 467
+ +F ++ +A +ID +PL L +Y FCI+PV+ ++ +++ + A +S
Sbjct: 553 DRFFICTVNQMKSLAELIDYIPLPLKVRYTFCIAPVNPDEKLAASAFVKMARRFS 607
>gi|340728105|ref|XP_003402370.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase SUV3
homolog, mitochondrial-like [Bombus terrestris]
Length = 738
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 179/420 (42%), Positives = 258/420 (61%), Gaps = 11/420 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP+AR K RK+I H GPTNSGKT+ AL R S+ SG+YCGPL+LLA EV
Sbjct: 169 ISDLQNPLYWYPIARSKKRKIIFHAGPTNSGKTYHALERFISARSGVYCGPLKLLAHEVF 228
Query: 119 KRLNKANVSCDLITGQE----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
+ N CDLITG+E + E A H + +VEMA++ + Y+ VIDEIQ++ R
Sbjct: 229 NKCNSRGTPCDLITGEEHRYAKSETSPACHVSCSVEMANIQNVYEVGVIDEIQLIRDPGR 288
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+ A+E+HLCG+ AA+ ++Q I TG+ V+++ Y+RL+ L N L S
Sbjct: 289 GWAWTRALLGLAADEIHLCGESAAISIVQSICLTTGESVEIKQYKRLTSLEVENSALCSL 348
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
NIQ GDCIV FSR+ I+ + AIE G H +++YG+LPP T+ QA +FND + +
Sbjct: 349 QNIQPGDCIVCFSRNEIFSVTNAIEKMG-HKVAVIYGNLPPGTKIAQAAKFNDVNDPCKI 407
Query: 295 LVASDAIGMGLNLNISRIIF-----STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA++AIGMGLNL+I RIIF T+ + ++V QIAGRAGRYG+++P
Sbjct: 408 LVATNAIGMGLNLHIRRIIFYSITQPTVSGKGDADTDTISVSSALQIAGRAGRYGTQWPK 467
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
G VT ED + K L + +E AGL P D I +Y+ P++ L ++ F+
Sbjct: 468 GFVTTYKPEDXSCIKKLLQQSPEEIEQAGLHPTADQIELYAYYLPNTPLSNLINIFIALC 527
Query: 410 KLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
KL YF N ++ +A +I +PL L +Y+FC +P++ ++ ++A SK
Sbjct: 528 KLDSTLYFICNLDDFKFLADMIQHIPLPLRTRYVFCCAPINRKMPLTCSMFLKYARQCSK 587
>gi|195156822|ref|XP_002019295.1| GL12317 [Drosophila persimilis]
gi|194115886|gb|EDW37929.1| GL12317 [Drosophila persimilis]
Length = 764
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 185/457 (40%), Positives = 277/457 (60%), Gaps = 22/457 (4%)
Query: 22 DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVIL 81
D++ P+ L K + F +D + +KK +DL +P WY AR RK++
Sbjct: 143 DDIFPYFLRHAKTV--FPHLDCM-------DDLKKI--SDLRQPANWYTNARALTRKIVF 191
Query: 82 HVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE---- 137
H GPTNSGKT+ A+ R S+ +G+YCGPL+LLA EV + N+ CDL+TG+ER+
Sbjct: 192 HSGPTNSGKTYHAMERYLSAKTGVYCGPLKLLATEVYNKANERGTPCDLVTGEERKFGIS 251
Query: 138 EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 197
+ A H A TVEM V + Y+ AVIDEIQ + RG+++TRA LG+ A+E+H+CG+
Sbjct: 252 DNSPANHVACTVEMTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLIADEVHVCGEAG 311
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
A+ L+Q+I + TG+ V+V+ Y+RL+ L + LGS N+ GDCIV FS+H IY + +
Sbjct: 312 ALELLQKICETTGETVEVRRYDRLTELTVEDSALGSLDNVMPGDCIVCFSKHDIYTVSRE 371
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF--- 314
IE+RGK + +++YG LPP T+ QA +FND ++ V+VA+DAIGMGLNL+I RIIF
Sbjct: 372 IEARGKEV-AVIYGGLPPGTKLAQAAKFNDPANSCKVMVATDAIGMGLNLSIRRIIFYSL 430
Query: 315 --STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSP 372
TM + E+ ++V QIAGRAGR+ +++ G VT SEDL L + L +
Sbjct: 431 VKPTMNERGEREIDTISVSSALQIAGRAGRFRTQWEHGYVTAFKSEDLQTLQRILAQTPD 490
Query: 373 MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVID 431
L+ AGL P D I +Y+ P+SSL +++ F+ + ++ YF N E+ +A +I
Sbjct: 491 PLKQAGLHPTADQIELYAYHLPNSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQ 550
Query: 432 QLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+PL L +Y+FC +P++ + A YS+
Sbjct: 551 HVPLPLRARYVFCCAPINRKMPFVCSMFLKIARQYSR 587
>gi|195036898|ref|XP_001989905.1| GH18537 [Drosophila grimshawi]
gi|193894101|gb|EDV92967.1| GH18537 [Drosophila grimshawi]
Length = 767
Score = 342 bits (878), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 178/419 (42%), Positives = 262/419 (62%), Gaps = 11/419 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL +P WY AR RK++ H GPTNSGKT+ A+ R S+ SG+YCGPL+LLA EV
Sbjct: 172 SDLRQPANWYTNARAITRKIVFHAGPTNSGKTYHAMERYLSAKSGVYCGPLKLLATEVYN 231
Query: 120 RLNKANVSCDLITGQERE----EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N+ CDL+TG+ER+ E A H A TVEM V + Y+ AVIDEIQ + RG
Sbjct: 232 KANERGTPCDLVTGEERKFGISENSPASHVACTVEMTSVNTPYEVAVIDEIQQMRDPQRG 291
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRA LG+ A+E+H+CG+ A+ L+++I + TG+ V+V+ Y+RL+ L + LGS
Sbjct: 292 WAWTRAFLGLIADEVHVCGEAGALDLLEKICETTGETVEVRRYDRLTELTVESSALGSLD 351
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N+ GDCIV FS+H IY + + IE+RGK + +++YG LPP T+ QA +FND + V+
Sbjct: 352 NVMPGDCIVCFSKHDIYTVSREIEARGKEV-AVIYGGLPPGTKLAQAAKFNDPENSCKVM 410
Query: 296 VASDAIGMGLNLNISRIIF-----STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF TM + E+ ++V QIAGRAGRY +++ G
Sbjct: 411 VATDAIGMGLNLSIRRIIFYSLVKPTMNERGEREIDTISVSSALQIAGRAGRYRTQWEHG 470
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
VT S+DL +L + L + L+ AGL P D I +Y+ P+SSL +++ F+
Sbjct: 471 FVTAFKSDDLKILQRILEQTPEPLKQAGLHPTADQIELYAYHLPNSSLSNLMDIFVNLCT 530
Query: 411 LSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ ++ YF N E+ +A +I +PL L +Y+FC +P++ + A YS+
Sbjct: 531 VDDSLYFMCNIEDFKFLAEMIQHVPLPLRARYVFCCAPINRKMPFVCSMFLKIARQYSR 589
>gi|115532784|ref|NP_001040912.1| Protein C08F8.2, isoform b [Caenorhabditis elegans]
gi|82465144|emb|CAJ43433.1| Protein C08F8.2, isoform b [Caenorhabditis elegans]
Length = 719
Score = 341 bits (875), Expect = 5e-91, Method: Compositional matrix adjust.
Identities = 177/412 (42%), Positives = 258/412 (62%), Gaps = 9/412 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DLTRPH WYP AR RK+ H GPTNSGKT+ AL R + S ++CGPL+LLA EV
Sbjct: 170 SDLTRPHNWYPEARSVTRKIFFHAGPTNSGKTYHALKRFGEAKSAVFCGPLKLLAAEVFH 229
Query: 120 RLNKANVSCDLITGQER----EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
R N+ + CDL+TG+ER + ++H + TVEM + AVIDEIQML + RG
Sbjct: 230 RTNELGIPCDLVTGEERRFAKDNHHPSQHLSSTVEMLSTQMRVEVAVIDEIQMLRDEQRG 289
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG A+E+HLCG+PAA+ +++++L+ G+ V+V+ YER SPL + + S+S
Sbjct: 290 WAWTRALLGAAADEIHLCGEPAAIDIVKKLLEPIGETVEVRYYERKSPLAIADKAIESYS 349
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
NI+ GDCIV FS+ +I+ K +E G +++YG LPP T+ QA +FND E +VL
Sbjct: 350 NIEPGDCIVCFSKRSIFFNSKKLEENGIK-PAVIYGDLPPGTKLAQAAKFNDPDDECNVL 408
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 355
VA+DAIGMGLNLNI R+IF++ + EL L QIAGRAGR+G+ + G T +
Sbjct: 409 VATDAIGMGLNLNIRRVIFNSCTR--QTEL--LPTYAALQIAGRAGRFGTAYANGVATTM 464
Query: 356 DSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENY 415
EDL L L E + + G+ P +D I +S P +S +L+ F+ +S+++
Sbjct: 465 RKEDLGTLKAILSEKIEPIANVGIAPTYDQIETFSFHLPQASFVRLLDLFVSVCSVSDHF 524
Query: 416 FFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYS 467
F ++ ++A +IDQ+PL L +Y FC SP++ D +S + A +S
Sbjct: 525 FICTVYDMRELAVLIDQIPLPLKVRYTFCTSPLNTEDKRTSAVFVKMARRFS 576
>gi|170035747|ref|XP_001845729.1| ATP-dependent RNA helicase SUV3, mitochondrial [Culex
quinquefasciatus]
gi|167878035|gb|EDS41418.1| ATP-dependent RNA helicase SUV3, mitochondrial [Culex
quinquefasciatus]
Length = 748
Score = 341 bits (874), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 177/419 (42%), Positives = 264/419 (63%), Gaps = 11/419 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL +P WYP AR RK+I H GPTNSGKT+ A+ R ++ SG+YCGPL+LLA EV
Sbjct: 168 SDLRQPANWYPSARGINRKIIFHSGPTNSGKTYHAMERFLTAKSGVYCGPLKLLASEVYN 227
Query: 120 RLNKANVSCDLITGQEREEVDG----AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N+ CDL+TG+ER+ D +KH A TVEM + + Y+ AVIDEIQ+L RG
Sbjct: 228 KSNQRGTPCDLVTGEERKFADPLGNPSKHVACTVEMTSITTPYEVAVIDEIQLLKDVGRG 287
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG+ A E+H+CG+P + L+Q++ T + ++V++Y+RL+ L + L +
Sbjct: 288 WAWTRALLGLMAEEIHVCGEPGTLDLLQKMCDTTHETLEVRNYKRLTALHIEDHALQTLD 347
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE+RG+ + +++YG LPP T+ QA +FND + VL
Sbjct: 348 NVRPGDCIVCFSKNDIYTVSREIEARGREV-AVIYGGLPPGTKLAQAAKFNDPDNSCKVL 406
Query: 296 VASDAIGMGLNLNISRIIFSTMKK-----FDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I R+IF +M K E+ ++V + QIAGRAGRYG K+ G
Sbjct: 407 VATDAIGMGLNLSIRRVIFYSMIKPTVNQKGEKEMDTISVSQALQIAGRAGRYGMKWDEG 466
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
VT EDLP L L + L AGL P D+I +Y+ P+++L ++E F+ +
Sbjct: 467 YVTTFKPEDLPTLKNILGQTPDPLTQAGLHPTADMIELYAYHLPNATLSNLMEIFVSLSI 526
Query: 411 LSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ ++ YF N E+ +A I +PL L +Y+FC +P++ ++A YSK
Sbjct: 527 VDDSLYFICNTEDFKFLAETIQHVPLPLRARYIFCCAPINRQMPFVCSMFLKYARRYSK 585
>gi|224141379|ref|XP_002324050.1| predicted protein [Populus trichocarpa]
gi|222867052|gb|EEF04183.1| predicted protein [Populus trichocarpa]
Length = 439
Score = 341 bits (874), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 176/395 (44%), Positives = 243/395 (61%), Gaps = 30/395 (7%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQER 136
RK+I H GPTNSGKT+ AL + + GIYC PLRLLA EV ++N V C L TGQE+
Sbjct: 3 RKIIYHCGPTNSGKTYNALQKFMEAKKGIYCSPLRLLAMEVFDKVNALGVYCSLYTGQEK 62
Query: 137 EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDP 196
+ V + H A TVEM YD AVIDEIQM+ RG+++TRALLG+ A+E+HLCGDP
Sbjct: 63 KHVPFSNHIACTVEMVSTEELYDVAVIDEIQMMADSCRGYAWTRALLGLKADEIHLCGDP 122
Query: 197 AAVPLIQQILQVTGDDVKVQSYERLSPL-VPLNVPLGSFSNIQTGDCIVTFSRHAIYRLK 255
+ + +++ I TGD++ Q YER PL V LG N+++GDCIV FSR I+ +K
Sbjct: 123 SVLDIVKNICSETGDELYEQHYERFKPLVVEAKTLLGDLKNVRSGDCIVAFSRREIFEVK 182
Query: 256 KAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFS 315
AIE H C ++YG+LPPETR +QA FND +E+DVLVASDA+GMGLNLNI R++F+
Sbjct: 183 MAIEKHTNHRCCVIYGALPPETRRQQANLFNDQDNEYDVLVASDAVGMGLNLNIRRVVFN 242
Query: 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 375
++ K++G ++ + +VKQIAGRAGR GS++P G T L EDL L L +P
Sbjct: 243 SLSKYNGDKIVPVPPSQVKQIAGRAGRRGSRYPDGLTTTLQLEDLDYLIDCLKQP----- 297
Query: 376 SAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP- 434
+ +LE F EN +L +YF + + KVA +++++
Sbjct: 298 -----------------------FHLLEKFGENCRLDGSYFLCRHDHIKKVANMLEKVQG 334
Query: 435 LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK 469
L L +++ FC +PV+ D + L +FA YS K
Sbjct: 335 LSLEDRFNFCFAPVNFRDPKAMYHLHRFAALYSIK 369
>gi|115532782|ref|NP_001040911.1| Protein C08F8.2, isoform a [Caenorhabditis elegans]
gi|74962468|sp|Q17828.2|SUV3_CAEEL RecName: Full=ATP-dependent RNA helicase SUV3 homolog,
mitochondrial; Flags: Precursor
gi|3874155|emb|CAA97429.1| Protein C08F8.2, isoform a [Caenorhabditis elegans]
Length = 721
Score = 341 bits (874), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 177/412 (42%), Positives = 258/412 (62%), Gaps = 9/412 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DLTRPH WYP AR RK+ H GPTNSGKT+ AL R + S ++CGPL+LLA EV
Sbjct: 172 SDLTRPHNWYPEARSVTRKIFFHAGPTNSGKTYHALKRFGEAKSAVFCGPLKLLAAEVFH 231
Query: 120 RLNKANVSCDLITGQER----EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
R N+ + CDL+TG+ER + ++H + TVEM + AVIDEIQML + RG
Sbjct: 232 RTNELGIPCDLVTGEERRFAKDNHHPSQHLSSTVEMLSTQMRVEVAVIDEIQMLRDEQRG 291
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG A+E+HLCG+PAA+ +++++L+ G+ V+V+ YER SPL + + S+S
Sbjct: 292 WAWTRALLGAAADEIHLCGEPAAIDIVKKLLEPIGETVEVRYYERKSPLAIADKAIESYS 351
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
NI+ GDCIV FS+ +I+ K +E G +++YG LPP T+ QA +FND E +VL
Sbjct: 352 NIEPGDCIVCFSKRSIFFNSKKLEENGIK-PAVIYGDLPPGTKLAQAAKFNDPDDECNVL 410
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 355
VA+DAIGMGLNLNI R+IF++ + EL L QIAGRAGR+G+ + G T +
Sbjct: 411 VATDAIGMGLNLNIRRVIFNSCTR--QTEL--LPTYAALQIAGRAGRFGTAYANGVATTM 466
Query: 356 DSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENY 415
EDL L L E + + G+ P +D I +S P +S +L+ F+ +S+++
Sbjct: 467 RKEDLGTLKAILSEKIEPIANVGIAPTYDQIETFSFHLPQASFVRLLDLFVSVCSVSDHF 526
Query: 416 FFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYS 467
F ++ ++A +IDQ+PL L +Y FC SP++ D +S + A +S
Sbjct: 527 FICTVYDMRELAVLIDQIPLPLKVRYTFCTSPLNTEDKRTSAVFVKMARRFS 578
>gi|221329989|ref|NP_649452.3| CG9791 [Drosophila melanogaster]
gi|251757439|sp|Q9VN03.3|SUV3_DROME RecName: Full=ATP-dependent RNA helicase SUV3 homolog,
mitochondrial; Flags: Precursor
gi|220902988|gb|AAF52149.3| CG9791 [Drosophila melanogaster]
gi|372466679|gb|AEX93152.1| FI17837p1 [Drosophila melanogaster]
Length = 763
Score = 340 bits (873), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 186/457 (40%), Positives = 275/457 (60%), Gaps = 22/457 (4%)
Query: 22 DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVIL 81
D++ P+ L K + F +D + +KK +DL +P WY AR RK++
Sbjct: 143 DDIFPYFLRHAKTV--FPHLDCM-------DDLKKI--SDLRQPANWYSNARAITRKIVF 191
Query: 82 HVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE---- 137
H GPTNSGKT+ A+ R S+ +G+YCGPL+LLA EV + N+ CDL+TG+ER+
Sbjct: 192 HAGPTNSGKTYHAMERYLSAKTGVYCGPLKLLATEVYNKANERGTPCDLVTGEERKFGIS 251
Query: 138 EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 197
E A H A TVEM V + Y+ AVIDEIQ + RG+++TRA LG+ A+E+H+CG+P
Sbjct: 252 ESLPANHVACTVEMTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLIADEVHVCGEPG 311
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
A+ L+Q+I + TG+ V+V+ Y+RL+ L N LGS NI GDCIV FS+H IY + +
Sbjct: 312 ALDLLQKICETTGETVEVRLYDRLTELTVENTALGSLDNIVPGDCIVCFSKHDIYTVSRE 371
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF--- 314
IE+RGK + +++YG LPP T+ QA +FND ++ V+VA+DAIGMGLNL+I RIIF
Sbjct: 372 IEARGKEV-AVIYGGLPPGTKLAQAAKFNDPANSCKVMVATDAIGMGLNLSIRRIIFYSL 430
Query: 315 --STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSP 372
+M + E+ ++V QIAGRAGR+ +++ G VT SEDL L + L
Sbjct: 431 IKPSMNERGEREIDTISVSSALQIAGRAGRFRTQWEHGYVTAFKSEDLQTLQRILARTPE 490
Query: 373 MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVID 431
++ AGL P D I +Y+ P SSL +++ F+ + ++ YF N E+ +A +I
Sbjct: 491 PIKQAGLHPTADQIELYAYHLPSSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQ 550
Query: 432 QLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ L L +Y+FC +P++ + A YS+
Sbjct: 551 HVALPLRARYVFCCAPINRKMPFVCSMFLKVARQYSR 587
>gi|195497028|ref|XP_002095927.1| GE25405 [Drosophila yakuba]
gi|194182028|gb|EDW95639.1| GE25405 [Drosophila yakuba]
Length = 758
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 186/458 (40%), Positives = 278/458 (60%), Gaps = 24/458 (5%)
Query: 22 DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVIL 81
D++ P+ L + + F +D + +KK +DL +P WY AR RK++
Sbjct: 143 DDIFPYFLRHARTV--FPHLDCM-------DDLKKI--SDLRQPANWYSNARAITRKIVF 191
Query: 82 HVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE---- 137
H GPTNSGKT+ A+ R S+ SG+YCGPL+LLA EV + N+ CDL+TG+ER+
Sbjct: 192 HAGPTNSGKTYHAMERYLSAKSGVYCGPLKLLATEVYNKANERGTPCDLVTGEERKFGIS 251
Query: 138 EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 197
E A H A TVEM V + Y+ AVIDEIQ + RG+++TRA LG+ A+E+H+CG+P
Sbjct: 252 ENSPAYHVACTVEMTSVNTPYEVAVIDEIQQIRDSQRGWAWTRAFLGLIADEVHVCGEPG 311
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
A+ L+ +I + TG+ V+V+ Y RL+ L N L S N+ GDCIV FS+H IY + +
Sbjct: 312 ALGLLLKICETTGETVEVRQYNRLTELTVENTALVSLDNVVPGDCIVCFSKHDIYTVSRE 371
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 317
IE+RGK + +++YG LPP T+ QA +FND + V+VA+DAIGMGLNL+I RIIF ++
Sbjct: 372 IEARGKEV-AVIYGGLPPGTKLAQAAKFNDPENSCKVMVATDAIGMGLNLSIRRIIFYSL 430
Query: 318 KK-----FDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE-PS 371
K E+ ++V QIAGRAGR+ +++ G VT +EDL +L + L + P
Sbjct: 431 IKPSINARGEREIDTISVSSALQIAGRAGRFRTQWEHGYVTAFKTEDLQILQRILAQTPE 490
Query: 372 PMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVI 430
P+++ AGL P D I +Y+ P+SSL +++ F+ + ++ YF N E+ +A +I
Sbjct: 491 PLMQ-AGLHPTADQIELYAYHLPNSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMI 549
Query: 431 DQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+PL L +Y+FC SP++ + A YS+
Sbjct: 550 QHVPLPLRARYVFCCSPINRKMPFVCSMFLKVARQYSR 587
>gi|195394872|ref|XP_002056063.1| GJ10732 [Drosophila virilis]
gi|194142772|gb|EDW59175.1| GJ10732 [Drosophila virilis]
Length = 767
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 183/457 (40%), Positives = 275/457 (60%), Gaps = 22/457 (4%)
Query: 22 DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVIL 81
D++ P+ L K + F +D + +KK +DL +P WY AR RK++
Sbjct: 145 DDIFPYFLRHAKTV--FPHLDCM-------DDLKKI--SDLRQPANWYSNARAITRKIVF 193
Query: 82 HVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE---- 137
H GPTNSGKT+ A+ R + +G+YCGPL+LLA EV + N+ CDL+TG+ER+
Sbjct: 194 HAGPTNSGKTYHAMERYLGAKTGVYCGPLKLLATEVYNKANERGTPCDLVTGEERKFGIS 253
Query: 138 EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 197
E A H A TVEM V + Y+ AVIDEIQ + RG+++TRA LG+ A+E+H+CG+
Sbjct: 254 ENSPANHVACTVEMTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLIADEVHVCGEAG 313
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
A+ L+++I + TG+ V+V+ Y+RL+ L + LGS N+ GDCIV FS+H IY + +
Sbjct: 314 ALELLEKICETTGETVEVRRYDRLTELTVESSALGSLDNVMPGDCIVCFSKHDIYTVSRE 373
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF--- 314
IE+RGK + +++YG LPP T+ QA +FND + V+VA+DAIGMGLNL+I RIIF
Sbjct: 374 IEARGKEV-AVIYGGLPPGTKLAQAAKFNDPENSCKVMVATDAIGMGLNLSIRRIIFYSL 432
Query: 315 --STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSP 372
TM + E+ ++V QIAGRAGRY +++ G VT +EDL L + L +
Sbjct: 433 VKPTMNERGEREIDTISVSSALQIAGRAGRYRTQWEHGYVTAFKAEDLQTLQRILNQTPE 492
Query: 373 MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVID 431
L+ AGL P D I +Y+ P+S+L +++ F+ + ++ YF N E+ +A +I
Sbjct: 493 PLKQAGLHPTADQIELYAYHLPNSTLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQ 552
Query: 432 QLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+PL L +Y+FC +P++ + A YS+
Sbjct: 553 HVPLPLRARYVFCCAPINRKMPFVCSMFLKIARQYSR 589
>gi|189240823|ref|XP_001811917.1| PREDICTED: similar to ATP-dependent RNA and DNA helicase [Tribolium
castaneum]
gi|270013711|gb|EFA10159.1| hypothetical protein TcasGA2_TC012348 [Tribolium castaneum]
Length = 742
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 181/421 (42%), Positives = 261/421 (61%), Gaps = 15/421 (3%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK+I H GPTNSGKT AL ++ SG+YCGPL+LLA EV K
Sbjct: 165 SDLRTPANWYPEARALNRKIIFHAGPTNSGKTFHALESFITAKSGVYCGPLKLLAAEVYK 224
Query: 120 RLNKANVSCDLITGQEREEVDGA----KHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N CDL+TG+ER+ D + H + TVEMA + + Y+ AVIDEIQM+ RG
Sbjct: 225 KSNSRGTPCDLVTGEERKYADSSGQPSTHVSCTVEMASLTAPYEVAVIDEIQMVRDHQRG 284
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRA LG+ A E+HLCG+ A+ LI Q+ T +D++V+ Y+RL+ L + LGS
Sbjct: 285 WAWTRAFLGLVAEEIHLCGEAGAIDLISQLCLTTNEDIEVRHYKRLTDLKVEDTALGSLD 344
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N+ GDCIV FS++ IY + + IE+ GK + +++YG LPP T+ QA +FND + +L
Sbjct: 345 NVMPGDCIVCFSKNDIYSVSRGIEATGKEV-AVIYGGLPPGTKLAQAAKFNDPENSCKIL 403
Query: 296 VASDAIGMGLNLNISRIIF-----STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I R+IF TM + E+ ++V QIAGRAGRYG+++ G
Sbjct: 404 VATDAIGMGLNLSIRRVIFYSLIKPTMNEKGEKEMDTISVSAALQIAGRAGRYGTQWEQG 463
Query: 351 EVTCLDSEDLPLLHKSLLE--PSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLEN 408
VT EDL L K+LLE P P+ + AGL P + I +Y+ P+S+L +++ F+
Sbjct: 464 FVTTFKPEDLKTL-KTLLESLPEPITQ-AGLHPTAEQIELYAYHLPNSTLSNLMDIFVSL 521
Query: 409 AKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYS 467
+ + ++ YF N E+ +A +I +PL L +Y+FC +P+ +F YS
Sbjct: 522 STVDDSLYFMCNVEDFKFLADMIQHVPLPLRARYVFCCAPISKKMPFVCTMFLKFTRQYS 581
Query: 468 K 468
K
Sbjct: 582 K 582
>gi|195446006|ref|XP_002070584.1| GK10952 [Drosophila willistoni]
gi|194166669|gb|EDW81570.1| GK10952 [Drosophila willistoni]
Length = 768
Score = 339 bits (869), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 182/457 (39%), Positives = 277/457 (60%), Gaps = 22/457 (4%)
Query: 22 DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVIL 81
D++ P+ L K + F +D + +KK +DL +P WY AR RK++
Sbjct: 149 DDIFPYFLRHAKTV--FPHLDCM-------DDLKKI--SDLRQPANWYTNARAITRKIVF 197
Query: 82 HVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE---- 137
H GPTNSGKT+ A+ R S+ SG+YCGPL+LLA EV + N+ CDL+TG+ER+
Sbjct: 198 HAGPTNSGKTYHAMERYLSAKSGVYCGPLKLLATEVYNKANERGTPCDLVTGEERKFGIS 257
Query: 138 EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 197
E A H A TVEM V + Y+ AVIDEIQ + RG+++TRA LG+ A+E+H+CG+
Sbjct: 258 ENSPASHVACTVEMTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLIADEVHVCGEAG 317
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
++ L+++I + TG+ V+V+ Y+RL+ L N LGS N++ GDCIV FS+H IY + +
Sbjct: 318 SLELLEKICETTGETVEVRRYDRLTELTVENTALGSLDNVRPGDCIVCFSKHDIYTVSRE 377
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF--- 314
IE+RGK + +++YG LPP T+ QA +FND + V+VA+DAIGMGLNL+I RIIF
Sbjct: 378 IEARGKEV-AVIYGGLPPGTKLAQAAKFNDPENSCKVMVATDAIGMGLNLSIRRIIFYSL 436
Query: 315 --STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSP 372
T+ + E+ ++V QIAGRAGR+ +++ G VT ++DL L + L +
Sbjct: 437 VKPTLNERGEREIDTISVSAALQIAGRAGRFRTQWEHGYVTAFKADDLSTLQRILGQTPE 496
Query: 373 MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVID 431
L+ AGL P D I +Y+ P+SSL +++ F+ + ++ YF N ++ +A +I
Sbjct: 497 PLKQAGLHPTADQIELYAYHLPNSSLSNLMDIFVNLCTVDDSLYFMCNIDDFKFLAEMIQ 556
Query: 432 QLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+PL L +Y+FC +P++ + A YS+
Sbjct: 557 HVPLPLRARYVFCCAPINRKMPFVCSMFLKIARQYSR 593
>gi|307185680|gb|EFN71602.1| ATP-dependent RNA helicase SUV3-like protein, mitochondrial
[Camponotus floridanus]
Length = 719
Score = 338 bits (868), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 184/423 (43%), Positives = 269/423 (63%), Gaps = 21/423 (4%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DL P TWYPLAR K RK+I H GPTNSGKT+ AL R ++ SG+YC PL+LL E
Sbjct: 165 DLRSPATWYPLARAKNRKIIFHAGPTNSGKTYHALERFINAKSGVYCAPLKLLVAE---- 220
Query: 121 LNKANVSCDLITGQEREEVDGA----KHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGF 176
CDL+TG+ER+ + GA H + +VEM ++ S+Y+ AVIDEIQ++ +RG+
Sbjct: 221 ----GTPCDLLTGEERKYIKGADNAANHLSCSVEMVNLNSNYEVAVIDEIQLMRDLSRGW 276
Query: 177 SFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSN 236
++TRALLGI A+E+HLCG+ AA+ L++ I G++V+V+ Y+RL+ L N LGS N
Sbjct: 277 AWTRALLGIPADEIHLCGEAAAIDLVKAICFSAGENVEVRRYKRLTNLEIENEALGSLIN 336
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296
I+ GDCIV FS++ I+ + +++ESRG + +++YGSLPP T+ QA +FND + VLV
Sbjct: 337 IKPGDCIVCFSKNDIFTVSRSLESRGTEV-AVIYGSLPPGTKLAQAAKFNDPKNSCKVLV 395
Query: 297 ASDAIGMGLNLNISRIIF-----STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGE 351
A++AIGMGLNL+I RIIF T + E+ L+V QIAGRAGRYG+ + G
Sbjct: 396 ATNAIGMGLNLHIRRIIFYSLIQPTYNEKGEKEMDILSVSAALQIAGRAGRYGTAWDTGY 455
Query: 352 VTCLDSEDLPLLHKSLLEPSP-MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
VT EDLP L K+LL+ +P ++ AGL P D I +Y+ P+S+L +++ F+
Sbjct: 456 VTTFKREDLPTL-KNLLKQTPEVITQAGLHPTADQIELYAYHLPNSTLSNLIDIFISLCT 514
Query: 411 LSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK 469
+ ++ YF N ++ +A +I +PL L +Y+FC +P++ +FA YSK
Sbjct: 515 VDDSLYFMCNLDDFKFLADMIQHVPLPLRTRYVFCCAPINRKLPYVCTMFLKFARQYSKN 574
Query: 470 GIV 472
+
Sbjct: 575 DAI 577
>gi|322802403|gb|EFZ22765.1| hypothetical protein SINV_08177 [Solenopsis invicta]
Length = 730
Score = 338 bits (867), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 180/424 (42%), Positives = 270/424 (63%), Gaps = 20/424 (4%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P +WYPLAR K RK+I H GPTNSGKT+ AL R ++ SG+YC PL+LL EV
Sbjct: 175 SDLRSPASWYPLARAKNRKIIFHAGPTNSGKTYHALERFITAKSGVYCAPLKLLVAEVFH 234
Query: 120 RLNKANVSCDLITGQEREEVDG----AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N+ CDL+TG+ER+ V G A H + +VEM ++ ++Y+ AVIDEIQ++ RG
Sbjct: 235 KCNERGTPCDLLTGEERKYVKGHDNAANHLSCSVEMVNLQNNYEVAVIDEIQLMRDLNRG 294
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLGI A+E+HLCG+ A+ L++ I TG+DV+V+ Y+RL+ L N + + +
Sbjct: 295 WAWTRALLGIPADEIHLCGEAGAIELVKSICVSTGEDVEVRRYKRLTELEIENQAVETLN 354
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N+ GDCIV F+++ IY + +++ESRGK + +++YGSLPP T+ QA +FND ++ +L
Sbjct: 355 NVMPGDCIVCFNKNDIYTVSRSLESRGKEV-AVIYGSLPPGTKLAQAAKFNDPNNSCKIL 413
Query: 296 VASDAIGMGLNLNISRIIF-----STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA++AIGMGLNL+I RIIF T + E+ ++V QIAGRAGRYG+ + G
Sbjct: 414 VATNAIGMGLNLHIRRIIFYSLIQPTFNEKGEKEMDVMSVSAALQIAGRAGRYGTVWDTG 473
Query: 351 EVTCLDSEDLPLLHKSLLEPSPM-LESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
VT EDLP L K+LL +P + AGL P D I +Y+ P+S+L +++ F+
Sbjct: 474 YVTTFKREDLPTL-KNLLSQTPEPITQAGLHPTADQIELYAYHLPNSTLSNLMDIFVSLC 532
Query: 410 KLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ ++ YF N ++ +A +I + L L +Y+FC +P++ FA YSK
Sbjct: 533 TVDDSLYFMCNIDDFKFLADMIQHVSLPLRARYVFCCAPINRKS-------PYFARQYSK 585
Query: 469 KGIV 472
+
Sbjct: 586 NDAI 589
>gi|268536316|ref|XP_002633293.1| Hypothetical protein CBG06022 [Caenorhabditis briggsae]
Length = 721
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 173/412 (41%), Positives = 258/412 (62%), Gaps = 9/412 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DLTRPH WYP AR +RK+ H GPTNSGKT+ AL R + S ++CGPL+LLA EV
Sbjct: 172 SDLTRPHNWYPEARSIIRKIFFHAGPTNSGKTYHALKRFGEAKSAVFCGPLKLLATEVFN 231
Query: 120 RLNKANVSCDLITGQER----EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
R N + CDL+TG+ER + ++H + TVEM + VIDEIQML + RG
Sbjct: 232 RTNALGIPCDLVTGEERRFAKDNHHPSQHLSSTVEMLSTQMRVEVVVIDEIQMLRDEQRG 291
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG A+E+HLCG+PAA+ +++++L+ G+ V+V+ Y+R SPL + + S+S
Sbjct: 292 WAWTRALLGAAADEIHLCGEPAAINIVKKLLEPIGETVEVRYYDRKSPLTIADRAIESYS 351
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
NI+ GDCIV FS+ A++ K +E G +++YG LPP T+ QA +FND E +VL
Sbjct: 352 NIEPGDCIVCFSKRAVFFNSKKLEENGIK-PAVIYGDLPPGTKLAQAAKFNDPDDECNVL 410
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 355
VA+DAIGMGLNLNI R+IF++ + EL L QIAGRAGR+G+ + G T +
Sbjct: 411 VATDAIGMGLNLNIRRVIFNSCTR--QTEL--LPTYAALQIAGRAGRFGTAYANGVATTM 466
Query: 356 DSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENY 415
EDL L L E + + G+ P +D I +S P +S +L+ F+ +S+++
Sbjct: 467 RKEDLGTLKTILAEKVEPITNVGIAPTYDQIETFSFHLPQASFVRLLDLFVSVCSVSDHF 526
Query: 416 FFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYS 467
F ++ ++A +IDQ+PL L +Y FC SP++ +D ++ + A ++
Sbjct: 527 FICTVYDMRELAVLIDQVPLPLKVRYTFCTSPLNTDDKRTAAVFVKMARRFA 578
>gi|348509637|ref|XP_003442354.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Oreochromis niloticus]
Length = 553
Score = 338 bits (867), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 168/361 (46%), Positives = 245/361 (67%), Gaps = 10/361 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP AR RKVI H GPTNSGKT+ A+ R ++ SG+YCGPL+LLA E+
Sbjct: 185 ISDLRVPANWYPEARAIQRKVIFHAGPTNSGKTYHAIQRYLAAKSGVYCGPLKLLAHEIF 244
Query: 119 KRLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N A V CDL+TG+ER VD A H A T+EM V + Y+ AVIDEIQM+ +R
Sbjct: 245 EKSNDAGVPCDLVTGEERTFVDPEGRAAGHVACTIEMCSVTTPYEVAVIDEIQMIRDPSR 304
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+CA E+H+CG+PAA+ I++++ TG++V+V +Y+RL+P L+ + S
Sbjct: 305 GWAWTRALLGLCAEEIHVCGEPAAIDFIKELMFTTGEEVEVHNYQRLTPFSILDHAVESL 364
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N++ GDCIV FS++ IY + + IE+RG+ C+++YGSLPP T+ QA +FND +
Sbjct: 365 DNLRPGDCIVCFSKNDIYSISRQIEARGQE-CAVIYGSLPPGTKLSQAKKFNDPDDPCKI 423
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVE-----LRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I RIIF+++ K + E + ++ + QIAGRAGR+ SKF
Sbjct: 424 LVATDAIGMGLNLSIKRIIFNSLVKPNVNEKGEKQMETISTSQALQIAGRAGRFSSKFKE 483
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
GEVT + +DLP+L + L +E+AGL P + I M++ PD++L ++ +NA
Sbjct: 484 GEVTTMHRDDLPVLKEILSHSVDPIETAGLHPTAEQIEMFAYHLPDATLSNLVLWTAKNA 543
Query: 410 K 410
+
Sbjct: 544 R 544
>gi|269849717|sp|Q61SU7.3|SUV3_CAEBR RecName: Full=ATP-dependent RNA helicase SUV3 homolog,
mitochondrial; Flags: Precursor
Length = 721
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 173/412 (41%), Positives = 258/412 (62%), Gaps = 9/412 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DLTRPH WYP AR +RK+ H GPTNSGKT+ AL R + S ++CGPL+LLA EV
Sbjct: 170 SDLTRPHNWYPEARSIIRKIFFHAGPTNSGKTYHALKRFGEAKSAVFCGPLKLLATEVFN 229
Query: 120 RLNKANVSCDLITGQER----EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
R N + CDL+TG+ER + ++H + TVEM + VIDEIQML + RG
Sbjct: 230 RTNALGIPCDLVTGEERRFAKDNHHPSQHLSSTVEMLSTQMRVEVVVIDEIQMLRDEQRG 289
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG A+E+HLCG+PAA+ +++++L+ G+ V+V+ Y+R SPL + + S+S
Sbjct: 290 WAWTRALLGAAADEIHLCGEPAAINIVKKLLEPIGETVEVRYYDRKSPLTIADRAIESYS 349
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
NI+ GDCIV FS+ A++ K +E G +++YG LPP T+ QA +FND E +VL
Sbjct: 350 NIEPGDCIVCFSKRAVFFNSKKLEENGIK-PAVIYGDLPPGTKLAQAAKFNDPDDECNVL 408
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 355
VA+DAIGMGLNLNI R+IF++ + EL L QIAGRAGR+G+ + G T +
Sbjct: 409 VATDAIGMGLNLNIRRVIFNSCTR--QTEL--LPTYAALQIAGRAGRFGTAYANGVATTM 464
Query: 356 DSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENY 415
EDL L L E + + G+ P +D I +S P +S +L+ F+ +S+++
Sbjct: 465 RKEDLGTLKTILAEKVEPITNVGIAPTYDQIETFSFHLPQASFVRLLDLFVSVCSVSDHF 524
Query: 416 FFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYS 467
F ++ ++A +IDQ+PL L +Y FC SP++ +D ++ + A ++
Sbjct: 525 FICTVYDMRELAVLIDQVPLPLKVRYTFCTSPLNTDDKRTAAVFVKMARRFA 576
>gi|391343726|ref|XP_003746157.1| PREDICTED: ATP-dependent RNA helicase SUV3 homolog,
mitochondrial-like [Metaseiulus occidentalis]
Length = 694
Score = 337 bits (865), Expect = 7e-90, Method: Compositional matrix adjust.
Identities = 180/428 (42%), Positives = 265/428 (61%), Gaps = 10/428 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP AR RK I H GPTNSGKT+ A+ S+S+G+YCGPL++LA EV
Sbjct: 137 ISDLRLPANWYPEARSVERKFIFHAGPTNSGKTYHAMEAFISASNGVYCGPLKMLAVEVY 196
Query: 119 KRLNKANVSCDLITGQEREEVDG---AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
++ N SCDL+TG+ER +G + H A TVEM D A+IDEIQM+ RG
Sbjct: 197 QKTNARGTSCDLVTGEERRRPNGDMPSSHVACTVEMTSTKEFVDVAIIDEIQMVKDPQRG 256
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLGI A E+HLCG+ AA+PLI++IL G+ ++V++YERL+PLV L S S
Sbjct: 257 WAWTRALLGIPAKEVHLCGEEAAIPLIREILAPLGEQIEVRNYERLTPLVVEKEALRSLS 316
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N+Q GDC+V F+++ IY + IE K C+I+YGSL P T++ Q+ +FND +L
Sbjct: 317 NLQPGDCVVCFNKNDIYTVSLEIERMDKQ-CAIIYGSLSPGTKSAQSEKFNDPDHPCKIL 375
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD----GVELRD-LTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF + K + GV R+ L+V + QIAGRAGR+G+ + G
Sbjct: 376 VATDAIGMGLNLSIRRIIFYNVTKPNTNEKGVCEREVLSVSQALQIAGRAGRFGTAWSEG 435
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
VT + +DLP+L L + +AGL P D I +++ P ++L +++ F ++
Sbjct: 436 RVTTMKPQDLPILTHLLNSKPETIAAAGLHPTADQIELFAYHLPHANLSNLIDIFCSLSR 495
Query: 411 LSE-NYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK 469
++ YF N E + +A +I + L L +Y+FC +P++ + ++A YS+
Sbjct: 496 MNNAQYFMCNVESLKYLADLIQHVNLPLRARYVFCCAPINPKMPFVTTVFLKYARQYSRN 555
Query: 470 GIVQLREI 477
V + +
Sbjct: 556 EPVTCQRV 563
>gi|357626560|gb|EHJ76612.1| putative ATP-dependent RNA and DNA helicase [Danaus plexippus]
Length = 1069
Score = 337 bits (864), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 176/425 (41%), Positives = 262/425 (61%), Gaps = 35/425 (8%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP AR RK+I H GPTNSGKT+ A+ + ++ SG+YCGPL+LLA E+
Sbjct: 172 ISDLRTPANWYPEARNINRKIIFHAGPTNSGKTYHAMEKFLAAKSGVYCGPLKLLATEIY 231
Query: 119 KRLNKANVSCDLITGQER----------------EEVDG------------AKHRAVTVE 150
+ N CDLITG+ER +E+D +KH A TVE
Sbjct: 232 HKSNSKGTPCDLITGEERRHASQYKTLVDNVEDNKELDHEPFLLEEPVLTPSKHVACTVE 291
Query: 151 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 210
M + YD A+IDEIQMLG K RG+++TRA+LG+ A+E+HLCG+ A+ L++++ TG
Sbjct: 292 MTSLNDTYDVAIIDEIQMLGDKGRGWAWTRAVLGLKADEIHLCGEAGAISLVEEMCNTTG 351
Query: 211 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 270
++++V++Y+RL+ L N LG+ N++ GDCIV F+++ IY + +AIE RG+ + +++Y
Sbjct: 352 EELEVRTYKRLTELKVENSALGTLDNVKAGDCIVCFNKNDIYSVSRAIEQRGREV-AVIY 410
Query: 271 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK----FDG-VEL 325
GSLPP T+ QA +FND S V+VA+DAIG+G+NL+I RIIF ++ K DG E+
Sbjct: 411 GSLPPGTKLAQANKFNDPESSCKVMVATDAIGLGINLSIRRIIFYSLIKPVINVDGDKEM 470
Query: 326 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 385
+++ + QIAGRAGRYGS + G VT SEDL L L +P + AGL P +
Sbjct: 471 DVISISQALQIAGRAGRYGSAWETGYVTTFKSEDLATLKTLLSQPPDPVTQAGLHPTAEQ 530
Query: 386 IYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFC 444
+ +Y+ P +SL +++ F+ + YF N E +A +I +PL L +Y+FC
Sbjct: 531 MELYAYHLPHASLSSLMDIFVHLCTVDATLYFMCNTEGFKFLAEMIQHVPLPLRARYVFC 590
Query: 445 ISPVD 449
+P++
Sbjct: 591 CAPIN 595
>gi|308491142|ref|XP_003107762.1| hypothetical protein CRE_12568 [Caenorhabditis remanei]
gi|308249709|gb|EFO93661.1| hypothetical protein CRE_12568 [Caenorhabditis remanei]
Length = 721
Score = 337 bits (863), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 172/412 (41%), Positives = 257/412 (62%), Gaps = 9/412 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DLTRPH WYP AR RK+ H GPTNSGKT+ AL R + S ++CGPL+LLA EV
Sbjct: 170 SDLTRPHNWYPEARSITRKIFFHAGPTNSGKTYHALKRFGEAKSAVFCGPLKLLASEVFT 229
Query: 120 RLNKANVSCDLITGQER----EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
R N + CDL+TG+ER + ++H + TVEM + VIDEIQML + RG
Sbjct: 230 RTNALGIPCDLVTGEERRFAKDNHHPSQHLSSTVEMLSTQMRVEVVVIDEIQMLRDEQRG 289
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG A+E+HLCG+PAA+ +++++L+ G+ V+++ Y+R SPL + + S+S
Sbjct: 290 WAWTRALLGAAADEIHLCGEPAAIDIVKKLLEPIGETVEIRYYDRKSPLTIADKAIESYS 349
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
NI+ GDCIV FS+ A++ K +E G +++YG LPP T+ QA +FND E +VL
Sbjct: 350 NIEPGDCIVCFSKKAVFFNSKKLEENGIK-PAVIYGDLPPGTKLAQAAKFNDPDDECNVL 408
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 355
VA+DAIGMGLNLNI R+IF++ + EL L QIAGRAGR+G+ + G T +
Sbjct: 409 VATDAIGMGLNLNIRRVIFNSCTR--QTEL--LPTYAALQIAGRAGRFGTAYANGVATTM 464
Query: 356 DSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENY 415
EDL L L E + + G+ P +D I +S P +S +L+ F+ +S+++
Sbjct: 465 RKEDLGTLKTILAEKVEPIANVGIAPTYDQIETFSFHLPQASFVRLLDLFVSVCSVSDHF 524
Query: 416 FFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYS 467
F ++ ++A +IDQ+PL L +Y FC SP++ +D ++ + A ++
Sbjct: 525 FICTVYDMRELAVLIDQVPLPLKVRYTFCTSPLNTDDKRTAAVFVKMARRFA 576
>gi|321456873|gb|EFX67971.1| hypothetical protein DAPPUDRAFT_63551 [Daphnia pulex]
Length = 734
Score = 335 bits (860), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 172/426 (40%), Positives = 264/426 (61%), Gaps = 12/426 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK++ H GPTNSGKT+ AL R +S SG+YCGPL+LLA EV
Sbjct: 125 SDLRLPANWYPEARALTRKIVFHSGPTNSGKTYHALERFFNSKSGVYCGPLKLLASEVYY 184
Query: 120 RLNKANVSCDLITGQEREEVDG-----AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
+ N+ V CDL+TG+ER + + H + TVEM V + Y+ AVIDEIQML +R
Sbjct: 185 KSNQRGVPCDLVTGEERNFANATDKSPSSHVSCTVEMVSVNTPYEVAVIDEIQMLKDPSR 244
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+ A E+H+CG+ AA+ ++++IL ++++++ Y+RL+ L+ + LG+
Sbjct: 245 GWAWTRALLGVVAEEVHVCGEAAAIDVVKEILMSASEEIEMRRYKRLTELIIEDGSLGTL 304
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
I+ GDC+V F++ I+ + IE+ G C+++YGSLPP T+ QA +FND V
Sbjct: 305 DKIRPGDCLVCFNKQDIFWSMRQIEAMGIE-CAVIYGSLPPGTKLAQAKKFNDPDHPCKV 363
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDG-----VELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNLNI R+IF+++ K E+ ++ + QIAGRAGRYG++F
Sbjct: 364 LVATDAIGMGLNLNIGRVIFNSLIKPTTNEKGEKEMDTISTSQALQIAGRAGRYGTQFST 423
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
G VT L +EDLP L + L + + GL P + I +Y+ P ++L +++ F+ +
Sbjct: 424 GYVTTLKNEDLPTLKRLLSQHPEPINQVGLHPTAEQIELYAYHLPHANLSNLIDIFVNLS 483
Query: 410 KLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
L ++ YF N + +A +I +PL L +Y+FC +P++ +FA YS+
Sbjct: 484 TLDDSLYFICNINDFKFLADMIQHVPLPLRARYVFCCAPINRKIPFVCSMFLKFARQYSR 543
Query: 469 KGIVQL 474
++
Sbjct: 544 NEVLSF 549
>gi|291231755|ref|XP_002735830.1| PREDICTED: suppressor of var1, 3-like 1-like [Saccoglossus
kowalevskii]
Length = 772
Score = 335 bits (859), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 175/415 (42%), Positives = 259/415 (62%), Gaps = 20/415 (4%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DLT P Y AR RK+I H GPTNSGKT+QAL R ++ SG+YCGPL+LLA EV
Sbjct: 184 ISDLTTPANLYQEARAMKRKIIFHAGPTNSGKTYQALERFYTAKSGVYCGPLKLLANEVH 243
Query: 119 KRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSF 178
+ K+N D T + +V + D V AVIDEIQML RG+++
Sbjct: 244 Q---KSNARSDATT------ISNIVPGSVPCKKGDEV-----AVIDEIQMLKDAGRGWAW 289
Query: 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQ 238
TRALLG+CA+E+H+CG+ AA+ L+ ++ TG+DV++ YERL+PL L+ L + N+Q
Sbjct: 290 TRALLGVCADEIHVCGEAAAIDLVNSLMLETGEDVEINRYERLTPLTILDEALVNLDNVQ 349
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
GDCIV FS++ IY++ + +E +GK C+++YGSLPP T+ QA +FND +LVA+
Sbjct: 350 PGDCIVAFSKNDIYKISRELERKGK-ACAVIYGSLPPGTKLAQAQKFNDPDDPCKILVAT 408
Query: 299 DAIGMGLNLNISRIIFS-----TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
DA+GMGLNL+I RIIF+ T+ + +E+ LT + QIAGRAGRYGSKF GEVT
Sbjct: 409 DAVGMGLNLSIKRIIFNSVVKPTLNEKGEIEIDRLTTSQALQIAGRAGRYGSKFADGEVT 468
Query: 354 CLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSE 413
L +DLP+L + L P +E+ GL P + I +++ PD++ +++ F+ ++++
Sbjct: 469 TLYPDDLPILKEILDNPVETIEAGGLHPTAEQIELFAYQLPDATFSNLVDIFVHLSEVNP 528
Query: 414 NYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+YF N ++ +A +I +PL L +Y FC +P++ +FA YS+
Sbjct: 529 HYFVCNLDDFKFLADMIQHIPLALRARYTFCCAPINRKHLFVCTSFLKFARQYSR 583
>gi|405976562|gb|EKC41064.1| ATP-dependent RNA helicase SUV3-like protein, mitochondrial
[Crassostrea gigas]
Length = 711
Score = 335 bits (858), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 187/417 (44%), Positives = 256/417 (61%), Gaps = 11/417 (2%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DLT+P WY AR+ RK+I H GPTNSGKT+ AL ++ SG+YCGPLRLLA EV +
Sbjct: 189 DLTQPANWYAEARRMKRKMIFHCGPTNSGKTYHALKAFMAAKSGVYCGPLRLLAVEVFNK 248
Query: 121 LNKANVSCDLITGQEREEVDG----AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGF 176
+ NV CDLITG+ER G A H + TVEM ++YD AVIDEIQML RG
Sbjct: 249 CLENNVPCDLITGEERRHHFGPDRPAAHVSCTVEMTSTTTEYDVAVIDEIQMLRDMERGG 308
Query: 177 SFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSN 236
++TR LLG+CA E+HLCG+ AAV L+++I+ TGD ++V+ YERL+ L N PL S
Sbjct: 309 AWTRVLLGLCAREIHLCGEEAAVNLVKRIVNTTGDTLEVRKYERLNRLRFDNNPLMSLKE 368
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296
+ GDCIV FS+ IY++ +E G H +++YGSLPP T+ QA +FND VLV
Sbjct: 369 VTAGDCIVCFSKRTIYKVCIELEKLG-HNVAVIYGSLPPATKLAQAQKFNDPKDPCKVLV 427
Query: 297 ASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT---VP--EVKQIAGRAGRYGSKFPVGE 351
A+DAIGMG+NL I RIIF ++K E DL +P + KQIAGRAGR+GS VG
Sbjct: 428 ATDAIGMGINLKIKRIIFLEIQKLTRDENGDLNYSFIPTHQAKQIAGRAGRFGSGENVGL 487
Query: 352 VTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKL 411
VT + + L + + + +++AGL P + + + P+ S+ IL F + +
Sbjct: 488 VTAHTEKKMIELKEIIQQDLEDIQAAGLLPTVEQLEQFYFYLPNFSMRDILGIFQYMSTV 547
Query: 412 -SENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYS 467
S+ YF E ++AT+ID + L L +Y FC++PV + S T+FA +YS
Sbjct: 548 NSDMYFLCGLENFKELATLIDHIDLPLRVRYQFCLAPVSVKSPFLSTLFTKFARSYS 604
>gi|223995241|ref|XP_002287304.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220976420|gb|EED94747.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 504
Score = 334 bits (857), Expect = 5e-89, Method: Compositional matrix adjust.
Identities = 179/423 (42%), Positives = 252/423 (59%), Gaps = 14/423 (3%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
+ TDLT PH WYP AR RK+I H GPTNSGKT+ AL RL+ + G+Y PLRLLA E
Sbjct: 10 EHTDLTSPHEWYPHARLDKRKIIFHAGPTNSGKTYSALQRLKQAKKGMYLAPLRLLAAEC 69
Query: 118 AKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
+ L + DLITGQE V + HR+ TVE+A + D+D VIDEIQM+ RGF+
Sbjct: 70 YENLTSDGIYTDLITGQETRSVPFSTHRSSTVELACIDEDFDVVVIDEIQMICDSFRGFA 129
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL------ 231
+TRAL+G+ E+H+CG A ++ +I Q+ GDD ++++Y R L L L
Sbjct: 130 WTRALMGVRCKEIHVCGGLEAKSIVAKIAQMCGDDFEMKTYTRFGELRVLENSLAATSTS 189
Query: 232 -GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASS 290
GS+SN+Q GDC+V FSR+ I+ +K+ IE C ++YG+LPP R QA RFND +S
Sbjct: 190 KGSYSNVQPGDCVVAFSRNDIFAIKREIEQSTHFKCCVIYGALPPAIRAEQARRFNDPNS 249
Query: 291 EFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
E++VLVASDAIGMGLNL+I RIIF+++ K +G + L VKQIAGRAGR S +P G
Sbjct: 250 EYEVLVASDAIGMGLNLSIKRIIFNSLFKNNGESIVQLDHSLVKQIAGRAGRRNSPYPHG 309
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRL-------HPDSSLYGILE 403
EVT D D+ L K + ++ AG+ P + I ++ L + SL+ L
Sbjct: 310 EVTTRDPFDMEHLRKCMSTEIEPIQKAGIIPTANHIGLFDELLKEYGASKKERSLHETLR 369
Query: 404 HFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFA 463
+F E A+L N+F + V+ + + + K+ C+SPV+ + S + L ++
Sbjct: 370 NFSEMAQLRGNFFLCRQKSFANVSKWLKDVDMPSTVKFTLCMSPVNESCPRSKRVLMRYV 429
Query: 464 TNY 466
Y
Sbjct: 430 EMY 432
>gi|310795139|gb|EFQ30600.1| hypothetical protein GLRG_05744 [Glomerella graminicola M1.001]
Length = 761
Score = 334 bits (856), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 187/429 (43%), Positives = 251/429 (58%), Gaps = 22/429 (5%)
Query: 44 IIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSS 103
++RS S S ++ DL PH W+P R R V LHVGPTNSGKT++AL LES+ S
Sbjct: 150 MMRSKLSQSTPRQKKLADLRFPHEWFPATRAIQRTVHLHVGPTNSGKTYRALQALESAKS 209
Query: 104 GIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHR-AVTVEMADVVSDYDCAV 162
GIY GPLRLLA E+ R +C L+TG+E+ D + + TVEM + D AV
Sbjct: 210 GIYGGPLRLLAHEIYSRFQAKGKACALVTGEEQRIPDADNYFISCTVEMTPLNRLVDVAV 269
Query: 163 IDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLS 222
+DEIQM+G RG+++T+A LG+ A E+HLCG+ V LI+ I GD V Y+RLS
Sbjct: 270 LDEIQMIGNSERGWAWTQAFLGVMAKEVHLCGEERVVDLIKSICSSIGDKCIVHRYQRLS 329
Query: 223 PLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQ 281
PL + LG+ + +Q GD IV F+R ++ LK AIE C+IVYGSLPPETR +Q
Sbjct: 330 PLQTMKESLGNDLTKLQKGDAIVAFNRIHLHGLKNAIEEATGRRCAIVYGSLPPETRAQQ 389
Query: 282 ATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAG 341
A FND +++D LVASDAIGMGLNL I R+IF T K DG + R LT EVKQI GRAG
Sbjct: 390 AALFNDPDNDYDFLVASDAIGMGLNLEIKRVIFETATKHDGTQFRTLTTSEVKQIGGRAG 449
Query: 342 RY-----------------GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD 384
R+ G K +G VT LD+EDLP++ K+ + LE A + P
Sbjct: 450 RFKTARQAATDHNGTAHIEGKK--MGYVTTLDNEDLPIIEKAFNSETAPLEVASIHPPAF 507
Query: 385 LIYMYSR-LHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLF 443
+I ++ PD+ L IL E A +SE Y E+ LK+A I + P+ + E+
Sbjct: 508 IIEQFAEYFPPDTPLSFILLRLRELAPVSERYTVHVPEDNLKIADAIQEFPMTIQERITI 567
Query: 444 CISPVDMND 452
+P+ + +
Sbjct: 568 LHAPISLRE 576
>gi|323451361|gb|EGB07238.1| hypothetical protein AURANDRAFT_10272 [Aureococcus anophagefferens]
Length = 480
Score = 334 bits (856), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 182/431 (42%), Positives = 259/431 (60%), Gaps = 20/431 (4%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSS----GIYCGPLRLLAW 115
DL P WYP AR R+VI H GPTNSGKT+ AL L+ + + G+Y GPLRLLA
Sbjct: 4 ADLRAPEEWYPKARLSRRRVIYHGGPTNSGKTYHALEALKRADADGGGGVYAGPLRLLAL 63
Query: 116 EVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
EV +RLN A C L TGQER EV A H + T+EM V +D AV+DEIQM+G RG
Sbjct: 64 EVYERLNAAGCYCSLFTGQERREVPFATHASCTIEMVPVGRRWDVAVVDEIQMIGSPDRG 123
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
++TRAL G+ A E+H+CG A L++++ +TGD +++ YERL+PL L ++
Sbjct: 124 HAWTRALHGLDAREIHVCGALDAAALVERLCGITGDAFELKEYERLTPLTTERAHLDGWT 183
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHL-CSIVYGSLPPETRTRQATRFNDASSEFDV 294
++ GDC+VTFSR I+R+++ IE+ + + C +VYG LPPETR +QA FND +S +DV
Sbjct: 184 GVKKGDCVVTFSRDDIHRVRREIETANEDMKCCVVYGQLPPETRAQQARLFNDEASGYDV 243
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKF---------DGVELRDLTVPEVKQIAGRAGRYGS 345
LVASDA+GMGLNLNI R++F + K+ DG L + VKQIAGRAGR +
Sbjct: 244 LVASDAVGMGLNLNIGRVLFRQILKYSGELSDEALDGTRLSPVEHQLVKQIAGRAGRMAT 303
Query: 346 KFPV--GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRL--HPDSSLYGI 401
F G VT +D+ DL + +L P+ + AGLFP +++ +++ D L +
Sbjct: 304 AFSSGGGGVTAMDARDLSYVRAALAAPNDAVSRAGLFPPAEILALFAAELGDADMGLGDV 363
Query: 402 LEHFLENAKLSEN-YFFANCEEVLKVATVI-DQLPLRLHEKYLFCISPVDMNDDISSQGL 459
+ F+E + E+ Y+ +EV KV + D + L L + LFC +P ++ND + L
Sbjct: 364 VAAFVEACDIDESLYYVCGQDEVAKVVKKLDDDIRLDLADMLLFCTAPCNLNDRFAVSML 423
Query: 460 TQFATNYSKKG 470
+A + G
Sbjct: 424 NAYARARAGGG 434
>gi|350420390|ref|XP_003492493.1| PREDICTED: ATP-dependent RNA helicase SUV3 homolog,
mitochondrial-like [Bombus impatiens]
Length = 729
Score = 333 bits (855), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 183/420 (43%), Positives = 261/420 (62%), Gaps = 11/420 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP+AR K RK+I H GPTNSGKT+ AL R S+ SG+YCGPL+LLA EV
Sbjct: 169 ISDLRNPLYWYPIARSKRRKIIFHAGPTNSGKTYHALERFISAKSGVYCGPLKLLANEVF 228
Query: 119 KRLNKANVSCDLITGQEREEVDG----AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
+ N CDL+TG+E + A H + ++EMA++ + Y+ VIDEIQ++ R
Sbjct: 229 NKCNSRGTPCDLVTGEEHKYAKNVTSPANHVSCSIEMANIQNIYEVGVIDEIQLIRDPNR 288
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+ A+E+HLCG+ AA+ ++Q I TG+ V+++ YERL+PL N L S
Sbjct: 289 GWAWTRALLGLAADEIHLCGESAAISIVQSICLTTGESVEIKQYERLTPLEVENSALCSL 348
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
IQ GDCIV FSR+ I+ + AIE G H +++YGSLPP T+ QA RFND + +
Sbjct: 349 RKIQPGDCIVCFSRNEIFSVSSAIEKMG-HKVAVIYGSLPPGTKIAQAARFNDINDPCKI 407
Query: 295 LVASDAIGMGLNLNISRIIF-----STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA++AIGMGLNL+I RIIF T+ + + ++V QIAGRAGRYG+++
Sbjct: 408 LVATNAIGMGLNLHIRRIIFYSIVQPTINEKGEAGVDTISVSSALQIAGRAGRYGTQWSK 467
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
G VT EDLPLL K L + +E AG+ P D I +Y+ P++ L ++ F+
Sbjct: 468 GFVTTYKPEDLPLLKKLLQQIPEEIEQAGVHPTPDQIELYAYYLPNAPLSNLINIFIALC 527
Query: 410 KL-SENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+L S YF N ++ +A I +PL L +Y+FC +PV+ ++ L ++A SK
Sbjct: 528 ELDSTLYFICNLDDFKFLADTIQHIPLPLRTRYVFCCAPVNRKMPLTCSMLLKYARQCSK 587
>gi|367045754|ref|XP_003653257.1| hypothetical protein THITE_2115480 [Thielavia terrestris NRRL 8126]
gi|347000519|gb|AEO66921.1| hypothetical protein THITE_2115480 [Thielavia terrestris NRRL 8126]
Length = 725
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 181/427 (42%), Positives = 254/427 (59%), Gaps = 16/427 (3%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
DL P+ WYP R R + LHVGPTNSGKT+ AL LE + +GIY GPLRLLA E+
Sbjct: 143 LADLRFPYEWYPATRMLQRTIHLHVGPTNSGKTYNALQALEKARTGIYAGPLRLLAHEIW 202
Query: 119 KRLNKANVSCDLITGQERE---EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
R C L+TG+E + D H + TVEM + + D AVIDEIQM+ + RG
Sbjct: 203 NRFTAKKKPCALVTGEEVRIPTDADTWFH-SCTVEMTPMNARVDVAVIDEIQMIASEDRG 261
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSF 234
+++T+A LG+ A E+HLCG+ VPLIQ + G++ V Y+RL+PL ++ L G F
Sbjct: 262 WAWTQAFLGVQAKEVHLCGEERVVPLIQDLCARIGEECIVHRYQRLNPLNVMDESLKGKF 321
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
SN+Q GD +V FSR ++++LK IE C+IVYG+LPPETR QA FN+ ++E+D
Sbjct: 322 SNLQKGDAVVAFSRVSLHQLKAGIEKETGRRCAIVYGNLPPETRASQAALFNNPNNEYDY 381
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY----------G 344
LVASDAIGMGLNL I R++F KFDGV R LTVPE+KQI GRAGR+
Sbjct: 382 LVASDAIGMGLNLEIKRVVFEASYKFDGVTFRPLTVPEIKQIGGRAGRFRTATRETAGDT 441
Query: 345 SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI-YMYSRLHPDSSLYGILE 403
S+ G VT LD EDL L+ + + +P + +AGLFP +I +S P + + +L
Sbjct: 442 SQPSPGLVTTLDEEDLDLIRAAFGKEAPPIPTAGLFPPPAVIERFHSYFPPRTPISFVLA 501
Query: 404 HFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFA 463
E ++LS + + + +A +I Q L + ++ +F P+++ D + L FA
Sbjct: 502 RLREMSRLSPRFHMCDFTNAMDIAEIIKQYDLSVSDRCVFLNVPMNLRDPRQVEALRAFA 561
Query: 464 TNYSKKG 470
++ G
Sbjct: 562 KCVAEMG 568
>gi|346977041|gb|EGY20493.1| ATP-dependent RNA helicase SUV3 [Verticillium dahliae VdLs.17]
Length = 748
Score = 332 bits (852), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 192/443 (43%), Positives = 258/443 (58%), Gaps = 22/443 (4%)
Query: 44 IIRSYCSGSGMKK-FDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSS 102
++RS S K+ D P W+P R R + LHVGPTNSGKT+ AL LE++
Sbjct: 151 MMRSRMSADVTKRQKQMADFRYPMEWFPATRALQRTIHLHVGPTNSGKTYHALKALENAK 210
Query: 103 SGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAV--TVEMADVVSDYDC 160
SGIY GPLRLLA EV R C ++TG+E+ +G + + TVEM + D
Sbjct: 211 SGIYGGPLRLLAHEVYARFTAKGKPCAMVTGEEQRIPEGVDNYFISCTVEMTPLNRLVDV 270
Query: 161 AVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 220
AVIDEIQM+G RG+++T+ALLG+ A E+HLCG+ AV L++ I GD V YER
Sbjct: 271 AVIDEIQMIGDPERGWAWTQALLGVMAKEVHLCGEERAVDLVKSICSALGDKCVVHRYER 330
Query: 221 LSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRT 279
LSPL + L G S ++ GD +V FSR ++ LKKAIE + C+IVYGSLPPETR
Sbjct: 331 LSPLQTMKKSLKGDLSKLEKGDAVVAFSRVGLHGLKKAIEEKTGKRCAIVYGSLPPETRA 390
Query: 280 RQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGR 339
+QA FND +E+D LVASDAIGMGLNL + RIIF T KFDGV R L+ E+KQI GR
Sbjct: 391 QQAALFNDPDNEYDFLVASDAIGMGLNLEVKRIIFETAAKFDGVNFRGLSTSEIKQIGGR 450
Query: 340 AGRYGS----------------KFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNF 383
AGR+ S K G VT LD+ DLP + ++ + + LE+A + P
Sbjct: 451 AGRFRSARQAAISADGAETLVEKKNPGLVTTLDALDLPRVQEAFTQQAEPLEAAYINPPA 510
Query: 384 DLIYMYSR-LHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYL 442
++ +S L PD+ L +L E A++S + + L+VA +I + PL +HE+
Sbjct: 511 FILERFSEYLPPDTPLSFMLLRIRELARVSPMFLVDISSDALRVADIIQEFPLTIHERLS 570
Query: 443 FCISPVDMNDDISSQGLTQFATN 465
+PV +N+ S L Q A N
Sbjct: 571 ILNAPVQLNEP-SVVHLVQAAAN 592
>gi|367022578|ref|XP_003660574.1| hypothetical protein MYCTH_2299039 [Myceliophthora thermophila ATCC
42464]
gi|347007841|gb|AEO55329.1| hypothetical protein MYCTH_2299039 [Myceliophthora thermophila ATCC
42464]
Length = 777
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 181/427 (42%), Positives = 252/427 (59%), Gaps = 16/427 (3%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
DL P+ WYP R R + LHVGPTNSGKT+ AL LE++ +GIY GPLRLLA E
Sbjct: 188 LADLRFPYEWYPATRMMQRTIHLHVGPTNSGKTYNALKALENARTGIYAGPLRLLAHETW 247
Query: 119 KRLNKANVSCDLITGQERE---EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
R N C L+TG+E + D H + TVEM + + D AVIDEIQM+ RG
Sbjct: 248 SRFQAKNKPCALVTGEEVRIPADTDTWFH-SCTVEMTPLNARVDVAVIDEIQMIANDERG 306
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSF 234
+++T+A LG+ A E+HLCG+ VPLIQ + G+ V YERL+PL ++ + G F
Sbjct: 307 WAWTQAFLGVQAKEVHLCGEERVVPLIQDLCARIGEKCIVHRYERLNPLQVMDKSMKGRF 366
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N+Q GD IV FS+ +I++LK IE C++VYGSLPPETR QA FND ++++D
Sbjct: 367 GNLQKGDAIVAFSKVSIHQLKAGIEKETGRRCAVVYGSLPPETRASQAALFNDPNNDYDF 426
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY----------G 344
LVASDAIGMGLNL + R+IF + KFDG R LT+PE+KQI GRAGRY
Sbjct: 427 LVASDAIGMGLNLEVKRVIFESSFKFDGTAFRPLTIPEIKQIGGRAGRYRTAAQEMTGDT 486
Query: 345 SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI-YMYSRLHPDSSLYGILE 403
SK G V+ LD EDL +++ + +P + +AG+FP +I +S P + + +L
Sbjct: 487 SKPAPGLVSALDDEDLQMINDAFQTEAPPIPTAGIFPPPSVIERFHSYFPPRTPISFVLA 546
Query: 404 HFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFA 463
E ++LS + + VL++A +I L + ++ +F PV++ D L FA
Sbjct: 547 RLREMSRLSPRFHMCDFSVVLQIADIIQPYDLSVSDRCVFLHVPVNLRDPRQVSALQAFA 606
Query: 464 TNYSKKG 470
++ G
Sbjct: 607 KCVAELG 613
>gi|302406861|ref|XP_003001266.1| ATP-dependent RNA helicase SUV3 [Verticillium albo-atrum VaMs.102]
gi|261359773|gb|EEY22201.1| ATP-dependent RNA helicase SUV3 [Verticillium albo-atrum VaMs.102]
Length = 695
Score = 332 bits (850), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 192/443 (43%), Positives = 258/443 (58%), Gaps = 22/443 (4%)
Query: 44 IIRSYCSGSGMKK-FDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSS 102
++RS S K+ D P W+P R R + LHVGPTNSGKT+ AL LE++
Sbjct: 151 MMRSRMSADVTKRQKQMADFRYPMEWFPATRALQRTIHLHVGPTNSGKTYHALKALENAK 210
Query: 103 SGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAV--TVEMADVVSDYDC 160
SGIY GPLRLLA EV R C ++TG+E+ +G + + TVEM + D
Sbjct: 211 SGIYGGPLRLLAHEVYARFTAKGKPCAMVTGEEQRIPEGVDNYFISCTVEMTPLNRLVDV 270
Query: 161 AVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 220
AVIDEIQM+G RG+++T+ALLG+ A E+HLCG+ AV L++ I GD V YER
Sbjct: 271 AVIDEIQMIGDPERGWAWTQALLGVMAKEVHLCGEERAVDLVKSICSALGDKCVVHRYER 330
Query: 221 LSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRT 279
LSPL + L G S ++ GD +V FSR ++ LKKAIE + C+IVYGSLPPETR
Sbjct: 331 LSPLQTMKKSLKGDLSKLEKGDAVVAFSRVGLHGLKKAIEEKTGKRCAIVYGSLPPETRA 390
Query: 280 RQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGR 339
+QA FND +E+D LVASDAIGMGLNL + RIIF T KFDGV R L+ E+KQI GR
Sbjct: 391 QQAALFNDPDNEYDFLVASDAIGMGLNLEVKRIIFETAAKFDGVNFRGLSTSEIKQIGGR 450
Query: 340 AGRYGS----------------KFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNF 383
AGR+ S K G VT LD+ DLP + ++ + + LE+A + P
Sbjct: 451 AGRFRSARQAATSADGAETLVEKKNPGLVTTLDALDLPRVQEAFTQQAEPLEAAYINPPA 510
Query: 384 DLIYMYSR-LHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYL 442
++ +S L PD+ L +L E A++S + + L+VA +I + PL +HE+
Sbjct: 511 FILERFSEYLPPDTPLSFMLLRIRELARVSPMFLVDISSDALRVADIIQEFPLTIHERLS 570
Query: 443 FCISPVDMNDDISSQGLTQFATN 465
+PV +N+ S L Q A N
Sbjct: 571 ILNAPVQLNEP-SVVHLVQAAAN 592
>gi|402079298|gb|EJT74563.1| ATP-dependent RNA helicase SUV3 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 783
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 181/436 (41%), Positives = 253/436 (58%), Gaps = 27/436 (6%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
+ TD PH W+P R R + LHVGPTNSGKT+ AL LE++ +G+Y GPLRLLA EV
Sbjct: 205 ELTDFRFPHEWFPATRAMHRTIHLHVGPTNSGKTYNALKALETARTGVYAGPLRLLAHEV 264
Query: 118 AKRLNKANVSCDLITGQEREEVDGAKH--RAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
RL K + C L+TG+E+ DG + A TVEM + D AVIDEIQM+ + RG
Sbjct: 265 YTRLTKKDKICALLTGEEQRIPDGFQFMFAACTVEMTPLNDVLDVAVIDEIQMITNEDRG 324
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
F++ +A LG+ A E+HLCG+ V LIQ + Q GD + Y RLSPL + LG
Sbjct: 325 FAWAQAFLGVQAREVHLCGEERTVDLIQNLCQRIGDTCIIHKYNRLSPLQTMRRSLGDLR 384
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GD +V+FSR ++RLK IE + C++VYGSLPPETR QA+ FND +++D L
Sbjct: 385 NLEKGDAVVSFSRVGLHRLKAGIEKQTGRRCAVVYGSLPPETRAEQASLFNDPDNDYDYL 444
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY------------ 343
VASDAIGMGLNL I R+IF + KFDG RDL +P++KQI GRAGR+
Sbjct: 445 VASDAIGMGLNLEIKRVIFEAITKFDGTMHRDLGIPDIKQIGGRAGRFRSAAHEIKGGSA 504
Query: 344 ---------GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI-YMYSRLH 393
S+ P G VT LD + L + + P ++ AG+ P I +YS
Sbjct: 505 TPLLDAPADRSEKPPGLVTTLDPKHLARVQHAFTVEVPQIKVAGILPPASSIEAIYSLFP 564
Query: 394 PDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDD 453
P + L +L + AK+S +F + +E ++VA I+ LP+ +H++ +P +
Sbjct: 565 PGTPLSHVLVKIRQLAKVSSEFFLCDIKEWIEVADAIEGLPMGIHDRCTLLNAPTSRD-- 622
Query: 454 ISSQGLTQFATNYSKK 469
+ + L FA S++
Sbjct: 623 -TMESLKVFAKCISQQ 637
>gi|340376109|ref|XP_003386576.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Amphimedon queenslandica]
Length = 791
Score = 331 bits (849), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 177/427 (41%), Positives = 260/427 (60%), Gaps = 15/427 (3%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
+ DLT P WYP AR R ++H GPTNSGKTH+AL ++SSGIYC PLR+LA E+
Sbjct: 245 NIADLTSPAQWYPAARAMKRHFVIHAGPTNSGKTHKALEAFYNASSGIYCAPLRMLAQEI 304
Query: 118 AKRLNKANVSCDLITGQEREEVDGA-----KHRAVTVEMADVV--SDYDCAVIDEIQMLG 170
+ N V CDLITG+ER V G+ H + T+EMA ++D A+IDE QM+
Sbjct: 305 YFKSNDQGVECDLITGEERIYVSGSPEKLSNHTSCTIEMASTAIGEEFDVAIIDEAQMVR 364
Query: 171 CKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVP 230
RG ++TRA+LG+ A E+HLCG+ + + +I+ I + GD V+V+ YERL+PL+PL
Sbjct: 365 DTERGGAWTRAILGVPAKEIHLCGEESVISIIRSIAESVGDTVEVKRYERLTPLIPLKRS 424
Query: 231 L-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDAS 289
L G++ I+ GDC++ FSR ++ +K IE C+IVYG LP R QA FN +
Sbjct: 425 LIGNYYFIRPGDCVIVFSRRLVFEVKDHIERATGRRCAIVYGGLPSVNRREQAELFNSPT 484
Query: 290 SEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV 349
S FD+LVA+DAIGMGLNL+I RI+F ++ K L +L+ ++KQI+GRAGRYGS F V
Sbjct: 485 SGFDILVATDAIGMGLNLHIRRILFHSVSKVARGNLENLSSSQLKQISGRAGRYGS-FNV 543
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
G VT + D+P ++ + ++ AGL P + + ++S+ P+ L+ +L F A
Sbjct: 544 GIVTTFFNRDMPYFQEAFKKKIADIDKAGLTPTLEQLQLFSKSLPNLKLHELLSVFSMAA 603
Query: 410 KLSENYFFANCEEVLK----VATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATN 465
KL YF CE+ ++ ++ V+ L L + FC+ PV++N + + + +A
Sbjct: 604 KLDGRYFL--CEDKMQEWRAISEVLSVYNLDLKDAITFCLCPVNLNVPLLRKMFSIYAAQ 661
Query: 466 YSKKGIV 472
S+K V
Sbjct: 662 VSEKKPV 668
>gi|336270658|ref|XP_003350088.1| hypothetical protein SMAC_00978 [Sordaria macrospora k-hell]
gi|380095483|emb|CCC06956.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 792
Score = 330 bits (845), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 186/446 (41%), Positives = 264/446 (59%), Gaps = 28/446 (6%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
DL P+ W+P R+ R + LHVGPTNSGKT+ AL LE++ SGIY GPLRLLA E+
Sbjct: 194 ADLRFPYEWFPATRQLQRTIHLHVGPTNSGKTYNALKALENAKSGIYAGPLRLLAHEIFT 253
Query: 120 RLNKANVSCDLITGQEREEVDGAK--HRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
R C LITG+E+ + A R+ TVEM + D AVIDEIQM+ + RG++
Sbjct: 254 RFIAKGKPCALITGEEQRIPENADMFFRSCTVEMTPLNWKVDVAVIDEIQMIADEHRGWA 313
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS-FSN 236
+T+A+LG A ELHLCG+ V LIQ++ GD V Y+RL+PL+P+ +G+ F N
Sbjct: 314 WTQAVLGCQAKELHLCGEERVVDLIQELCARLGDKCIVHRYQRLNPLLPMEEAVGTDFKN 373
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296
+Q GD +++FSR ++ LK IE C+IVYGSLPPETR QA FND ++E+D LV
Sbjct: 374 LQKGDAVISFSRVNLHALKAGIEGATGRKCAIVYGSLPPETRAAQAALFNDPNNEYDFLV 433
Query: 297 ASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY------------- 343
ASDAIGMGLNL I R++F + KFDG R LT+PEVKQI GRAGRY
Sbjct: 434 ASDAIGMGLNLEIKRVVFESAFKFDGSTQRPLTIPEVKQIGGRAGRYRTANDAVCSGNEG 493
Query: 344 -------GSKFPV-GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLH-P 394
SK+ G VT +D +DL + K LL+ + + +AG+ P +I ++ L P
Sbjct: 494 EASVTSAQSKWGAPGFVTAMDEQDLEHIKKHLLKDAKPITAAGIMPPSHIIERFASLFPP 553
Query: 395 DSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDI 454
D L +L E A+LS ++ + +VL+++ V+ + L ++++ + +PV + +
Sbjct: 554 DIPLAFVLSRLREMARLSSSFNICSFGDVLEISNVLKEFNLSIYDRSVLLTAPVSLREQA 613
Query: 455 SSQGLTQFA---TNYSKKGIVQLREI 477
L FA N S ++++ EI
Sbjct: 614 QKDVLRAFAWSIANLSGGHLLEIPEI 639
>gi|430811577|emb|CCJ30963.1| unnamed protein product [Pneumocystis jirovecii]
Length = 569
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 175/418 (41%), Positives = 259/418 (61%), Gaps = 13/418 (3%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+D+ P W+P AR R LH+GPTNSGKT+QAL +LE + SG + GPLRLLA E+
Sbjct: 63 SDMRYPSEWFPNARAIERSWYLHIGPTNSGKTYQALKKLEKARSGWFAGPLRLLAHEIFD 122
Query: 120 RLNKANVSCDLITGQEREEVD-GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSF 178
++ K + C+LITG+E++ +D A TVEM ++ D VIDE+QM+ RG+++
Sbjct: 123 KMMKKGIVCNLITGEEQKIIDKNAALHISTVEMVNLDKLMDIIVIDEVQMIADPHRGWAW 182
Query: 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSNI 237
T+ LLG+ A+E+HLCG+ ++V LI +I + G+ VK+ Y+RL+PL PL L G + +
Sbjct: 183 TQVLLGVQASEIHLCGEESSVELILKIAKSMGEKVKIYHYKRLNPLEPLKQSLYGDLTKV 242
Query: 238 QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 297
++GDCIVTFSR I+ LKK IE + C++ YG LPPETR QA FND ++++ VLVA
Sbjct: 243 ESGDCIVTFSRRDIFSLKKKIEEKTGQRCAVAYGGLPPETRNEQARLFNDPNNDYHVLVA 302
Query: 298 SDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG---------SKFP 348
SDAIGMGLNLNI RIIF +KK++G++ + V ++KQIAGRAGRY S
Sbjct: 303 SDAIGMGLNLNIRRIIFERLKKWNGIKHLPIPVSQIKQIAGRAGRYKFIPTQNTSESSAA 362
Query: 349 VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY-SRLHPDSSLYGILEHFLE 407
G VT L +D+ LH +L +P ML+ A LFP + + S P +SL I++ +
Sbjct: 363 KGYVTSLQQKDIKSLHIALSQPIQMLKKASLFPPLHIQESFASFFQPGTSLSLIIKRLKQ 422
Query: 408 NAKLSENYFFANCEEVLKVATVIDQL-PLRLHEKYLFCISPVDMNDDISSQGLTQFAT 464
+K + Y ++ + + +++Q+ L + E+ + +PV++ D FAT
Sbjct: 423 LSKTTGFYIISDTTQQQNILELLEQINNLTVSERLILSAAPVNLKDSGVKSAFLAFAT 480
>gi|156120373|ref|NP_001095332.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial [Bos taurus]
gi|151555726|gb|AAI49120.1| SUPV3L1 protein [Bos taurus]
gi|296472119|tpg|DAA14234.1| TPA: suppressor of var1, 3-like 1 [Bos taurus]
Length = 535
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 168/353 (47%), Positives = 237/353 (67%), Gaps = 10/353 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+
Sbjct: 183 ISDLRIPPNWYPEARAIHRKIIFHSGPTNSGKTYHAIQKYLSAKSGVYCGPLKLLAHEIF 242
Query: 119 KRLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N A V CDL+TG+ER VD A H A TVEM V + Y+ AVIDEIQM+ R
Sbjct: 243 EKSNAAGVPCDLVTGEERVSVDPDGKQAAHVACTVEMCSVTTPYEVAVIDEIQMIKDPAR 302
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+CA E+HLCG+ AA+ ++ +++ TG+DV+V++Y+RL+P+ L+ L S
Sbjct: 303 GWAWTRALLGLCAEEIHLCGESAAIDMVTELMYTTGEDVEVRTYKRLTPISVLDHALESL 362
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND +
Sbjct: 363 DNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPDDPCKI 421
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I RIIF ++ K E+ +T + QIAGRAGR+ SKF
Sbjct: 422 LVATDAIGMGLNLSIRRIIFYSLMKPSINEKGEKEIEPITTSQALQIAGRAGRFSSKFKE 481
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGIL 402
GEVT ++ EDL LL + L P +++AGL P + I M++ PD++L ++
Sbjct: 482 GEVTTMNREDLSLLKEILNRPVDPIKAAGLHPTAEQIEMFAYHLPDTTLSNLI 534
>gi|85107578|ref|XP_962405.1| hypothetical protein NCU06371 [Neurospora crassa OR74A]
gi|28924010|gb|EAA33169.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 791
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 200/505 (39%), Positives = 284/505 (56%), Gaps = 39/505 (7%)
Query: 11 ASALGIPRILRDNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKK----------FDFT 60
ASALG+ DN ++L S I G A + +R M+K
Sbjct: 135 ASALGMTSRT-DNPLFWNLRSAFIKGDAAGLTKELRYALQTFLMRKQFSKSTTELHLRLA 193
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DL P+ W+P R+ R + LHVGPTNSGKT+ AL LE++ SGIY GPLRLLA E+ R
Sbjct: 194 DLRFPYEWFPATRQLQRTIHLHVGPTNSGKTYNALKALENAKSGIYAGPLRLLAHEIYTR 253
Query: 121 LNKANVSCDLITGQEREEVDGAK--HRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSF 178
SC LITG+E+ + A R+ TVEM + D AVIDEIQM+ + RG+++
Sbjct: 254 FTAKGKSCALITGEEQRIPEDADMFFRSCTVEMTPLNWKVDVAVIDEIQMIADEHRGWAW 313
Query: 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS-FSNI 237
T+A+LG A ELHLCG+ V LIQ++ GD V Y+RL+PL+P+ +G+ F N+
Sbjct: 314 TQAVLGCQAKELHLCGEERVVDLIQELCARLGDKCIVHRYQRLNPLLPMEQAVGTDFKNL 373
Query: 238 QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 297
Q GD +++FSR ++ LK IE C+IVYGSLPPETR QA FND ++E+D LVA
Sbjct: 374 QKGDAVISFSRVNLHSLKAGIEEATGRKCAIVYGSLPPETRAAQAALFNDPNNEYDFLVA 433
Query: 298 SDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG------------- 344
SDAIGMGLNL I R++F + KFDG+ R LT+PEVKQI GRAGRY
Sbjct: 434 SDAIGMGLNLEIKRVVFESAFKFDGMAHRPLTIPEVKQIGGRAGRYRTATDAVRSGKEEE 493
Query: 345 -------SKFPV-GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRL-HPD 395
SK+ G VT +D +DL ++ K L + + +AG+ P +I ++ L PD
Sbjct: 494 TSATSAFSKWGAPGFVTAMDDQDLGVIRKHLQNDAKPIAAAGILPPSHIIERFASLFSPD 553
Query: 396 SSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDIS 455
L +L E A+LS ++ + E L ++ V+ + L ++++ + +PV + +
Sbjct: 554 IPLAFVLSRLREMARLSSSFNMCSFGEHLDISDVLKEFDLSIYDRSVLLTAPVSLREKGQ 613
Query: 456 SQGLTQFA---TNYSKKGIVQLREI 477
L FA N S ++++ E+
Sbjct: 614 KDILRAFAWSIANLSGGHLLEIPEV 638
>gi|198438453|ref|XP_002129406.1| PREDICTED: similar to suppressor of var1, 3-like 1 [Ciona
intestinalis]
Length = 677
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 186/468 (39%), Positives = 271/468 (57%), Gaps = 24/468 (5%)
Query: 31 SEKIIGAFASVDVIIRSYCS-GSGMKKFD----FTDLTRPHTWYPLARKKVRKVILHVGP 85
S K+ A + + I CS +K+F +D++ P WY AR RK++ H GP
Sbjct: 127 SSKLYNLDALLPLFIEHGCSVYPSLKQFSDLRTISDISEPTLWYENARSIKRKIVYHAGP 186
Query: 86 TNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE----EVDG 141
TNSGKTH AL R + +G+YC PLRLLA EV ++ V CD+ITG +R+ E D
Sbjct: 187 TNSGKTHAALQRFYEAKTGVYCSPLRLLAREVCQKARDHGVHCDMITGDDRDYHYHENDQ 246
Query: 142 AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPL 201
A A TVEM ++ Y+ A+IDEIQML RG+++TRA LG+CA E+H+CG+ AV +
Sbjct: 247 ASKVACTVEMTNLFRRYEIAIIDEIQMLSDMERGWAWTRAFLGVCAPEIHVCGEARAVDI 306
Query: 202 IQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESR 261
++Q+ D +V +Y+RL L P+ SF+N++ GDCI+ F++ IY +K + S
Sbjct: 307 VRQLADECNDSFEVVTYKRLGKLRVKKHPVESFNNLKPGDCIICFNKSRIYSYQKKLNSL 366
Query: 262 GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFS-----T 316
G + +I+YGSLPP T+ QA +FND +VL+ +DAIGMGLNLNI RIIFS T
Sbjct: 367 GIN-SAIIYGSLPPRTKLEQAKKFNDKDHPCNVLITTDAIGMGLNLNIRRIIFSDLYKTT 425
Query: 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLES 376
+ K EL+ LT QIAGRAGR+ S++ GEVT L S+ +PLLHK L + +P ++
Sbjct: 426 LTKGGRRELKQLTTSHALQIAGRAGRFNSQYKDGEVTSLSSKHMPLLHKLLRQTAPEIKV 485
Query: 377 AGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFF----ANCE---EVLKVATV 429
AGL P F+L+ ++ + SL ++ F+ +++E FF C E L+ A
Sbjct: 486 AGLHPTFELLAEFANVLNTKSLSEVIVMFIGMCEMNEKLFFLCSLKECHDIAEYLEDANA 545
Query: 430 IDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI 477
+ LR + Y FC SP+ + L F +Y+ V +++
Sbjct: 546 CRGISLR--DMYTFCSSPISSGNKEVLSVLAAFVNSYANNVAVTEQDV 591
>gi|336471022|gb|EGO59183.1| hypothetical protein NEUTE1DRAFT_128634 [Neurospora tetrasperma
FGSC 2508]
gi|350292099|gb|EGZ73294.1| hypothetical protein NEUTE2DRAFT_107697 [Neurospora tetrasperma
FGSC 2509]
Length = 796
Score = 329 bits (844), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 200/505 (39%), Positives = 284/505 (56%), Gaps = 39/505 (7%)
Query: 11 ASALGIPRILRDNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKK----------FDFT 60
ASALG+ DN ++L S I G A + +R M+K
Sbjct: 140 ASALGMTSRT-DNPLFWNLRSAFIKGDAAGLTKELRYALQTFLMRKQFSKSTTELHLRLA 198
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DL P+ W+P R+ R + LHVGPTNSGKT+ AL LE++ SGIY GPLRLLA E+ R
Sbjct: 199 DLRFPYEWFPATRQLQRTIHLHVGPTNSGKTYNALKALENAKSGIYAGPLRLLAHEIYTR 258
Query: 121 LNKANVSCDLITGQEREEVDGAK--HRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSF 178
SC LITG+E+ + A R+ TVEM + D AVIDEIQM+ + RG+++
Sbjct: 259 FTAKGKSCALITGEEQRIPEDADMFFRSCTVEMTPLNWKVDVAVIDEIQMIADEHRGWAW 318
Query: 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS-FSNI 237
T+A+LG A ELHLCG+ V LIQ++ GD V Y+RL+PL+P+ +G+ F N+
Sbjct: 319 TQAVLGCQAKELHLCGEERVVDLIQELCARLGDKCIVHRYQRLNPLLPMEQAVGTDFKNL 378
Query: 238 QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 297
Q GD +++FSR ++ LK IE C+IVYGSLPPETR QA FND ++E+D LVA
Sbjct: 379 QKGDAVISFSRVNLHSLKAGIEEATGRKCAIVYGSLPPETRAAQAALFNDPNNEYDFLVA 438
Query: 298 SDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG------------- 344
SDAIGMGLNL I R++F + KFDG+ R LT+PEVKQI GRAGRY
Sbjct: 439 SDAIGMGLNLEIKRVVFESAFKFDGMAHRPLTIPEVKQIGGRAGRYRTATDAVRSGKEEE 498
Query: 345 -------SKFPV-GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRL-HPD 395
SK+ G VT +D +DL ++ K L + + +AG+ P +I ++ L PD
Sbjct: 499 TSATSAFSKWGAPGFVTAMDEQDLGVIRKHLQNDAKPIAAAGILPPSHIIERFASLFSPD 558
Query: 396 SSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDIS 455
L +L E A+LS ++ + E L ++ V+ + L ++++ + +PV + +
Sbjct: 559 IPLAFVLSRLREMARLSSSFNMCSFGEHLDISDVLKEFDLSIYDRSVLLTAPVSLREKGQ 618
Query: 456 SQGLTQFA---TNYSKKGIVQLREI 477
L FA N S ++++ E+
Sbjct: 619 KDILRAFAWSIANLSGGHLLEIPEV 643
>gi|341894290|gb|EGT50225.1| hypothetical protein CAEBREN_30421 [Caenorhabditis brenneri]
Length = 742
Score = 328 bits (842), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 175/428 (40%), Positives = 258/428 (60%), Gaps = 25/428 (5%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DLTRPH WYP AR RK+ H GPTNSGKT+ AL R + S ++CGPL+LLA EV
Sbjct: 169 SDLTRPHNWYPEARSITRKIFFHAGPTNSGKTYHALKRFGEAKSAVFCGPLKLLAAEVFN 228
Query: 120 RLNKANVSCDLITGQER----EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
R N+ + CDL+TG+ER + ++H + TVEM + VIDEIQML + RG
Sbjct: 229 RTNELGIPCDLVTGEERRFAKDNHHPSQHLSSTVEMLSTQMRVEVVVIDEIQMLRDEQRG 288
Query: 176 FSFTRALLGICANE----------------LHLCGDPAAVPLIQQILQVTGDDVKVQSYE 219
+++TRALLG A+E +HLCG+PAA+ +++++L+ G+ V+V+ YE
Sbjct: 289 WAWTRALLGAAADEVSINVVFHNRRFIQLQIHLCGEPAAIDIVKKLLEPIGETVEVRYYE 348
Query: 220 RLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRT 279
R SPL + + S+SNI+ GDCIV FS+ A++ K +E G +++YG LPP T+
Sbjct: 349 RKSPLAIGDKAIESYSNIEPGDCIVCFSKRAVFFNSKKLEENGIK-PAVIYGDLPPGTKL 407
Query: 280 RQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGR 339
QA +FND E +VLVA+DAIGMGLNLNI R+IF++ + EL L QIAGR
Sbjct: 408 AQAAKFNDPDDECNVLVATDAIGMGLNLNIKRVIFNSCTR--QTEL--LPTYAALQIAGR 463
Query: 340 AGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLY 399
AGR+G+ + G T + EDL L L E + + G+ P +D I +S P +S
Sbjct: 464 AGRFGTAYANGVATTMRKEDLGTLKAILSEKVDPIMNVGIAPTYDQIETFSFHLPQASFV 523
Query: 400 GILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGL 459
+L+ F+ +S+++F ++ ++A +IDQ+PL L +Y FC SP++ +D ++
Sbjct: 524 RLLDLFVSVCSVSDHFFICTVYDMRELAVLIDQVPLPLKVRYTFCTSPLNTDDKRTAAVF 583
Query: 460 TQFATNYS 467
+ A +S
Sbjct: 584 VKMARRFS 591
>gi|116196278|ref|XP_001223951.1| hypothetical protein CHGG_04737 [Chaetomium globosum CBS 148.51]
gi|88180650|gb|EAQ88118.1| hypothetical protein CHGG_04737 [Chaetomium globosum CBS 148.51]
Length = 742
Score = 328 bits (840), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 181/421 (42%), Positives = 244/421 (57%), Gaps = 16/421 (3%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
+ DL P+ WYP R R + LHVGPTNSGKT+ AL LESS +GIY GPLRLLA E
Sbjct: 157 ELADLRFPYEWYPATRMMQRTIHLHVGPTNSGKTYNALRALESSRTGIYAGPLRLLAHET 216
Query: 118 AKRLNKANVSCDLITGQER---EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
R + C L+TG+E E+ D H + TVEM + + D AVIDEIQM+ R
Sbjct: 217 WSRFVAKDRPCALVTGEEMRIPEDSDTWFH-SCTVEMTPLNAKVDVAVIDEIQMIADDER 275
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GS 233
G+++T+A LG+ A E+HLCG+ VPLIQ + G+ V Y+RL+PL ++ L G
Sbjct: 276 GWAWTQAFLGVQAKEVHLCGEERVVPLIQDLCARIGEKCVVHRYQRLNPLKMMDTSLKGK 335
Query: 234 FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293
F N+Q GD IV F++ I++LK IE C+IVYG+LPPETR QA FND ++++D
Sbjct: 336 FGNLQKGDAIVAFTKLGIHQLKAGIEKTTGRRCAIVYGNLPPETRASQAALFNDPNNDYD 395
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV---- 349
LVASDAIGMGLNL I R+IF + KFDGV LR LT PE KQI GRAGR+ +
Sbjct: 396 FLVASDAIGMGLNLEIKRVIFESSYKFDGVNLRPLTTPETKQIGGRAGRFRTAAQAASGD 455
Query: 350 ------GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI-YMYSRLHPDSSLYGIL 402
G +T LD EDLP L K+ + + +AG+FP +I YS P + + +L
Sbjct: 456 NTAPSPGLITALDDEDLPTLKKAFHAEAGPIRTAGVFPPPAIIERFYSYFPPRTPISFVL 515
Query: 403 EHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQF 462
++LS + N + + +I L + ++ +F PV++ D L F
Sbjct: 516 ARLQHLSRLSPRFHMCNFNDAFAIGELIKGYDLSVADRCVFLNVPVNLRDPQQISALQSF 575
Query: 463 A 463
A
Sbjct: 576 A 576
>gi|150865139|ref|XP_001384238.2| mitochondrial RNA helicase [Scheffersomyces stipitis CBS 6054]
gi|149386395|gb|ABN66209.2| mitochondrial RNA helicase [Scheffersomyces stipitis CBS 6054]
Length = 640
Score = 328 bits (840), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 181/429 (42%), Positives = 266/429 (62%), Gaps = 27/429 (6%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
D+ DL+ P W+P ARK RK+++HVGPTNSGKT+ +L +L + +G Y GPLRLLA E+
Sbjct: 129 DYIDLSNPAQWFPEARKMKRKIVMHVGPTNSGKTYNSLKKLAEAKTGYYAGPLRLLAREI 188
Query: 118 AKRLNKANVSCDLITGQE-------REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLG 170
++ NV C+LITG+E +V G + T+EM + D VIDEIQM+
Sbjct: 189 YEKFLSTNVRCNLITGEEIIPCMDKFGKVSGIS--SGTIEMIPLHKKMDVCVIDEIQMIA 246
Query: 171 CKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVP 230
RG +T ALLG+ A E+HLCG+ +AVPLI+++ ++TGD+V+V+ Y+RL L +
Sbjct: 247 DPGRGSIWTNALLGVLAKEIHLCGEESAVPLIKKLAKMTGDEVEVKQYKRLGELKVTDKA 306
Query: 231 LGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASS 290
+ S++ ++ GDC+V FS+H I +LK IE R +VYG+LPPE R+ Q+ +FN S
Sbjct: 307 I-SYNKLEKGDCLVAFSKHKILQLKCEIERRTNLSVGVVYGALPPEIRSEQSRKFN--SG 363
Query: 291 EFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK--FP 348
EFD+LVASDA+GMGLNL I RIIF T++KFDG E+ +LTV VKQIAGRAGRY
Sbjct: 364 EFDILVASDAVGMGLNLKIKRIIFQTVRKFDGKEMTNLTVSSVKQIAGRAGRYSETHGMQ 423
Query: 349 VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY-SRLHPDSSLYGILEHFLE 407
G V+ L S DL + +++ P LE A ++P FD+ Y ++ D SLY L F
Sbjct: 424 TGYVSALTSRDLMYIKQAMNAPIRELEKAAIWPTFDIWKQYMAKFSKDESLYDSLLQFER 483
Query: 408 NA--KLSENYFFANCE---EVLKV---ATVIDQLPLRLHEKYLFCISPVDMNDDISSQGL 459
K E+Y+ A + E++K+ + ++P + ++ + + P+++N +SS +
Sbjct: 484 ETKDKRMEHYYVATVDDKAELMKLFLRENLYKKVP--IDDQLILSLCPINLN--MSSPEV 539
Query: 460 TQFATNYSK 468
T+ Y K
Sbjct: 540 TEMTFKYIK 548
>gi|389634037|ref|XP_003714671.1| ATP-dependent RNA helicase SUV3 [Magnaporthe oryzae 70-15]
gi|351647004|gb|EHA54864.1| ATP-dependent RNA helicase SUV3 [Magnaporthe oryzae 70-15]
gi|440474806|gb|ELQ43528.1| ATP-dependent RNA helicase SUV3 [Magnaporthe oryzae Y34]
gi|440487290|gb|ELQ67087.1| ATP-dependent RNA helicase SUV3 [Magnaporthe oryzae P131]
Length = 757
Score = 328 bits (840), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 178/414 (42%), Positives = 247/414 (59%), Gaps = 25/414 (6%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D P W+P R RK+ LHVGPTNSGKT+ AL LES+++G+Y GPLRLLA EV R
Sbjct: 183 DFQHPTEWFPGTRSMQRKIHLHVGPTNSGKTYNALKALESATTGVYAGPLRLLAHEVYTR 242
Query: 121 LNKANVSCDLITGQEREEVDGAKH--RAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSF 178
+ SC L+TG+E+ + + + TVEMA + + D AVIDEIQM+ RG+++
Sbjct: 243 MVAKGRSCALLTGEEQRWPEDTQSFISSCTVEMAPLNTVVDVAVIDEIQMIADPDRGWAW 302
Query: 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLG-SFSNI 237
T+A+LGI A E+HLCG+ V LI+++ + GD+ V YERLSPL P+N LG +
Sbjct: 303 TQAVLGIQAREVHLCGEERTVDLIKRLAESMGDECIVHQYERLSPLEPMNSSLGGDLKKL 362
Query: 238 QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 297
Q GD +V FSR ++ LK+ IE + C+IVYGSLPPETR QA FND +E+D +VA
Sbjct: 363 QKGDAVVAFSRIGLHALKRGIEKQTGKRCAIVYGSLPPETRAEQAALFNDPDNEYDYIVA 422
Query: 298 SDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG------------- 344
SDAIGMGLNL I R++F T KFDG E R L E+KQI GRAGR+
Sbjct: 423 SDAIGMGLNLEIRRVVFDTTNKFDGSERRFLGESEIKQIGGRAGRFRSAAQAIQSATEGD 482
Query: 345 --------SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSR-LHPD 395
S+ VG VTC+D DL + K+ P +++AGL P +I +S D
Sbjct: 483 EEIARRAVSRPSVGYVTCVDDGDLRRIQKAFEVEVPPIKAAGLLPPAAIIEKFSSYFAQD 542
Query: 396 SSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVD 449
+ L IL E + S++YF N ++ ++ A +I P+ + ++ + +P+D
Sbjct: 543 TPLSHILLKIREVVRTSDDYFVCNFDDWIEAADIIQAFPMPISDRLVLLSAPLD 596
>gi|440632056|gb|ELR01975.1| hypothetical protein GMDG_05144 [Geomyces destructans 20631-21]
Length = 897
Score = 327 bits (839), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 179/415 (43%), Positives = 251/415 (60%), Gaps = 23/415 (5%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
F DL P W+P R RKV LHVGPTNSGKT+ AL RLE + SG+Y GPLRLLA EV
Sbjct: 302 FVDLRYPIEWFPATRALQRKVHLHVGPTNSGKTYHALQRLEQAESGLYAGPLRLLAHEVY 361
Query: 119 KRLNKANVSCDLITGQEREEVDGAK--HRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGF 176
RLN C LITG+ER +G + TVEM + ++ + AVIDEIQM+G RG+
Sbjct: 362 SRLNAKGKPCSLITGEERRFPEGPTPTMSSCTVEMVPLNTEVEVAVIDEIQMMGDGFRGW 421
Query: 177 SFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFS 235
++T+A LG+ A E+H+CG+ +PLIQ + ++ GD++ V YERL+PL + L G
Sbjct: 422 AWTQAFLGVRAREIHICGELRTIPLIQNLCKLMGDELTVHRYERLTPLECMGKSLHGKLD 481
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
++ GDCI+ FSR AI+ +KK +E C++VYGSLPPETR +QA FND +E+D L
Sbjct: 482 KLKKGDCIILFSRVAIHAMKKEVERATGKRCAVVYGSLPPETRAQQAALFNDPDNEYDYL 541
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKF-------- 347
VASDA+GMGLNL I R+IF + KFDG R++ + E+KQIAGRAGRY +
Sbjct: 542 VASDAVGMGLNLAIRRVIFEALSKFDGKSHRNIPISEIKQIAGRAGRYKTAAEAMKRKDG 601
Query: 348 PVGEV-----------TCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS 396
P GEV T LD+ D LL +++ L++AG+FP ++ ++ P
Sbjct: 602 PTGEVSRQVGRNVGLATTLDAVDHALLKRAMGTDVEPLKTAGIFPPSTILQKFAAYFPKG 661
Query: 397 S-LYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDM 450
+ L I+ E A L+ + + E L +A +I+ L L ++ +F +P ++
Sbjct: 662 TPLSYIILRLNEFATLNPMFTLCDFNEQLLLADMIEPFNLTLQDQLVFIAAPANV 716
>gi|317158967|ref|XP_001827445.2| ATP-dependent RNA helicase SUV3 [Aspergillus oryzae RIB40]
gi|391866410|gb|EIT75682.1| RNA helicase SUV3, DEAD-box superfamily [Aspergillus oryzae 3.042]
Length = 746
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 189/434 (43%), Positives = 262/434 (60%), Gaps = 22/434 (5%)
Query: 44 IIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSS 103
+ Y + + ++ D+ P WYP AR R + LHVGPTNSGKT+QAL +LE+S S
Sbjct: 161 VTSKYSTPNIEQQKKVADMRFPAEWYPQARSIQRTIHLHVGPTNSGKTYQALKKLEASKS 220
Query: 104 GIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAV--TVEMADVVSDYDCA 161
G Y GPLRLLA EV R +C L+TG + + +G V TVEM ++ YD
Sbjct: 221 GFYAGPLRLLAQEVYHRFQANGTTCSLVTGDDVKIPEGQAPTIVSNTVEMVNLGQPYDVG 280
Query: 162 VIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERL 221
VIDEIQM+G RG+++TRA+LG A ELHLCG+P VPLI+++ +TGD +++ YERL
Sbjct: 281 VIDEIQMIGDPKRGWAWTRAVLGARAKELHLCGEPRVVPLIRELAALTGDKLEIHRYERL 340
Query: 222 SPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 280
+PL ++ L G N+Q GDC+V FSR I+ LK IE +IVYGSLP E RT+
Sbjct: 341 NPLKVMDRSLRGDLKNLQKGDCLVAFSRVGIHALKADIEKVTGKRAAIVYGSLPAEIRTQ 400
Query: 281 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 340
QA+ FND ++E+D LVASDAIGMGLNL+ RIIF T+ K L L+VPE+KQIAGRA
Sbjct: 401 QASLFNDPNNEYDYLVASDAIGMGLNLSCKRIIFETLVKRVPGGLVRLSVPEIKQIAGRA 460
Query: 341 GRYGSKFP--------------VGEVTCLDSEDLPLLHKSL-LEPSPMLESAGLFPNFDL 385
GRY S VG VT L+ DLP +H+++ +EP P + +AG+FP +
Sbjct: 461 GRYRSAAQQQKKGKAAEYDGTNVGYVTSLEEVDLPYIHQAMGIEPPP-ITAAGVFPPEPI 519
Query: 386 IYMYSRLHPDS-SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLF 443
++ P S L I++ ++ +++ +F + L A VID + LR ++ F
Sbjct: 520 FQRFAAYFPQSVPLEYIIKRLIDVSQVHPLFFMCDPRGQLDNAEVIDTVSGLRFEDQMTF 579
Query: 444 CISPVDMNDDISSQ 457
+P+ DISS+
Sbjct: 580 MAAPMHTR-DISSR 592
>gi|426364980|ref|XP_004049568.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial
[Gorilla gorilla gorilla]
Length = 774
Score = 327 bits (837), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 175/418 (41%), Positives = 256/418 (61%), Gaps = 22/418 (5%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+ +
Sbjct: 183 SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE 242
Query: 120 RLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N A V CDL+TG+ER V A H + TVEM C+V + K
Sbjct: 243 KSNAAGVPCDLVTGEERVTVQPNGKQASHVSCTVEM--------CSVTTPCMYMLFKKLC 294
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
F AL G+CA E+HLCG+PAA+ L+ +++ TG++V+V+ Y+RL+P+ L+ L S
Sbjct: 295 F----ALTGLCAEEVHLCGEPAAIDLVTELMYTTGEEVEVRDYKRLTPISVLDHALESLD 350
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND + +L
Sbjct: 351 NLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKKFNDPNDPCKIL 409
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I RIIF ++ K EL +T + QIAGRAGR+ S+F G
Sbjct: 410 VATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEG 469
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
EVT ++ EDL LL + L P + +AGL P + I M++ PD++L +++ F++ ++
Sbjct: 470 EVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQ 529
Query: 411 LSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ YF N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 530 VDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 587
>gi|83776193|dbj|BAE66312.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 635
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 189/434 (43%), Positives = 262/434 (60%), Gaps = 22/434 (5%)
Query: 44 IIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSS 103
+ Y + + ++ D+ P WYP AR R + LHVGPTNSGKT+QAL +LE+S S
Sbjct: 50 VTSKYSTPNIEQQKKVADMRFPAEWYPQARSIQRTIHLHVGPTNSGKTYQALKKLEASKS 109
Query: 104 GIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAV--TVEMADVVSDYDCA 161
G Y GPLRLLA EV R +C L+TG + + +G V TVEM ++ YD
Sbjct: 110 GFYAGPLRLLAQEVYHRFQANGTTCSLVTGDDVKIPEGQAPTIVSNTVEMVNLGQPYDVG 169
Query: 162 VIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERL 221
VIDEIQM+G RG+++TRA+LG A ELHLCG+P VPLI+++ +TGD +++ YERL
Sbjct: 170 VIDEIQMIGDPKRGWAWTRAVLGARAKELHLCGEPRVVPLIRELAALTGDKLEIHRYERL 229
Query: 222 SPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 280
+PL ++ L G N+Q GDC+V FSR I+ LK IE +IVYGSLP E RT+
Sbjct: 230 NPLKVMDRSLRGDLKNLQKGDCLVAFSRVGIHALKADIEKVTGKRAAIVYGSLPAEIRTQ 289
Query: 281 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 340
QA+ FND ++E+D LVASDAIGMGLNL+ RIIF T+ K L L+VPE+KQIAGRA
Sbjct: 290 QASLFNDPNNEYDYLVASDAIGMGLNLSCKRIIFETLVKRVPGGLVRLSVPEIKQIAGRA 349
Query: 341 GRYGSKFP--------------VGEVTCLDSEDLPLLHKSL-LEPSPMLESAGLFPNFDL 385
GRY S VG VT L+ DLP +H+++ +EP P + +AG+FP +
Sbjct: 350 GRYRSAAQQQKKGKAAEYDGTNVGYVTSLEEVDLPYIHQAMGIEPPP-ITAAGVFPPEPI 408
Query: 386 IYMYSRLHPDS-SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLF 443
++ P S L I++ ++ +++ +F + L A VID + LR ++ F
Sbjct: 409 FQRFAAYFPQSVPLEYIIKRLIDVSQVHPLFFMCDPRGQLDNAEVIDTVSGLRFEDQMTF 468
Query: 444 CISPVDMNDDISSQ 457
+P+ DISS+
Sbjct: 469 MAAPMHTR-DISSR 481
>gi|238506895|ref|XP_002384649.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Aspergillus flavus NRRL3357]
gi|220689362|gb|EED45713.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Aspergillus flavus NRRL3357]
Length = 635
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 189/434 (43%), Positives = 262/434 (60%), Gaps = 22/434 (5%)
Query: 44 IIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSS 103
+ Y + + ++ D+ P WYP AR R + LHVGPTNSGKT+QAL +LE+S S
Sbjct: 50 VTSKYSTPNIEQQKKVADMRFPAEWYPQARSIQRTIHLHVGPTNSGKTYQALKKLEASKS 109
Query: 104 GIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAV--TVEMADVVSDYDCA 161
G Y GPLRLLA EV R +C L+TG + + +G V TVEM ++ YD
Sbjct: 110 GFYAGPLRLLAQEVYHRFQANGTTCSLVTGDDVKIPEGQAPTIVSNTVEMVNLGQPYDVG 169
Query: 162 VIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERL 221
VIDEIQM+G RG+++TRA+LG A ELHLCG+P VPLI+++ +TGD +++ YERL
Sbjct: 170 VIDEIQMIGDPKRGWAWTRAVLGARAKELHLCGEPRVVPLIRELAALTGDKLEIHRYERL 229
Query: 222 SPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 280
+PL ++ L G N+Q GDC+V FSR I+ LK IE +IVYGSLP E RT+
Sbjct: 230 NPLKVMDRSLRGDLKNLQKGDCLVAFSRVGIHALKADIEKVTGKRAAIVYGSLPAEIRTQ 289
Query: 281 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 340
QA+ FND ++E+D LVASDAIGMGLNL+ RIIF T+ K L L+VPE+KQIAGRA
Sbjct: 290 QASLFNDPNNEYDYLVASDAIGMGLNLSCKRIIFETLVKRVPGGLVRLSVPEIKQIAGRA 349
Query: 341 GRYGSKFP--------------VGEVTCLDSEDLPLLHKSL-LEPSPMLESAGLFPNFDL 385
GRY S VG VT L+ DLP +H+++ +EP P + +AG+FP +
Sbjct: 350 GRYRSAAQQQKKGKAAENDGTNVGYVTSLEEVDLPYIHQAMGIEPPP-ITAAGVFPPEPI 408
Query: 386 IYMYSRLHPDS-SLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLF 443
++ P S L I++ ++ +++ +F + L A VID + LR ++ F
Sbjct: 409 FQRFAAYFPQSVPLEYIIKRLIDVSQVHPLFFMCDPRGQLDNAEVIDTVSGLRFEDQMTF 468
Query: 444 CISPVDMNDDISSQ 457
+P+ DISS+
Sbjct: 469 MAAPMHTR-DISSR 481
>gi|358383047|gb|EHK20716.1| hypothetical protein TRIVIDRAFT_171151 [Trichoderma virens Gv29-8]
Length = 629
Score = 326 bits (835), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 185/449 (41%), Positives = 265/449 (59%), Gaps = 18/449 (4%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D PH W+P R R + +HVGPTNSGKT++AL LE+S G+Y GPLRLLA EV +R
Sbjct: 69 DFRFPHEWFPATRAMQRTIHVHVGPTNSGKTYRALKALENSKCGVYAGPLRLLATEVYQR 128
Query: 121 LNKANVSCDLITGQE-REEVDGAKH-RAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSF 178
N+ C LITG+E R D ++ + TVEM + + +D AVIDEIQM+ RG ++
Sbjct: 129 FKAKNIPCALITGEEVRIPEDADQYFSSCTVEMIPLNTRFDVAVIDEIQMIADADRGNAW 188
Query: 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSNI 237
T A+LG+ A E+H+CG+ AV +IQ + GD V YERLSPL ++ L G ++++
Sbjct: 189 TSAVLGVQAKEVHVCGEERAVKVIQAMCASIGDKCVVHRYERLSPLKTMDKALNGDYNSL 248
Query: 238 QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 297
Q GD IV FSR ++ LK+ IE C+I+YGSLPPE R +QA FND +++D +VA
Sbjct: 249 QKGDAIVAFSRLNLHALKQRIEQNTGRRCAIIYGSLPPEVRAQQAALFNDPDNDYDFVVA 308
Query: 298 SDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKF---------- 347
SDAIGMGLNL I R+I ++ K+DG + R LT PE+KQI GRAGRY S
Sbjct: 309 SDAIGMGLNLEIRRVILESVTKYDGSQNRLLTFPEIKQIGGRAGRYRSAQNPDGSADETE 368
Query: 348 PVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY-SRLHPDSSLYGILEHFL 406
VG VT +D DL + ++ + +E+A + P ++ + S PD+ L IL+
Sbjct: 369 KVGLVTTMDRADLKSVQRAFQKSVDDIEAACIQPPAGIVERFASYFPPDTPLSFILKRIQ 428
Query: 407 ENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISS---QGLTQFA 463
E A +S Y ++L++A +I +PL +H++ FC PV + D + + L Q
Sbjct: 429 ETATVSSLYRIGLGSDILEIADIIQDIPLTIHDRLTFCYLPVALRADRAIDVLRALAQVV 488
Query: 464 TNYSKKGIVQLREIFTPGLGSLRVAEFPV 492
SK ++ + EI L L++ +F V
Sbjct: 489 ATNSKGDLLDIEEIPLEYL-DLKMEDFQV 516
>gi|340514593|gb|EGR44854.1| predicted protein [Trichoderma reesei QM6a]
Length = 786
Score = 325 bits (834), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 181/434 (41%), Positives = 258/434 (59%), Gaps = 17/434 (3%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D PH W+P R R + +HVGPTNSGKT+ AL LE+S GIY GPLRLLA EV +R
Sbjct: 224 DFRFPHEWFPATRMMQRTIHVHVGPTNSGKTYNALKALENSKCGIYAGPLRLLATEVYQR 283
Query: 121 LNKANVSCDLITGQE-REEVDGAKH-RAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSF 178
N+ C LITG+E R D ++ + TVEM + S +D AVIDEIQM+ RG ++
Sbjct: 284 FKAKNIPCALITGEEVRIPEDADQYFSSCTVEMMPLNSRFDVAVIDEIQMIADHDRGNAW 343
Query: 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSNI 237
T A+LG+ A E+H+CG+ AV +I+ + GD V YERLSPL ++ L G +S++
Sbjct: 344 TTAVLGVQAKEVHVCGEERAVNVIKAMCASIGDKCVVHRYERLSPLKTMDKALNGDYSSL 403
Query: 238 QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 297
Q GD IV FSR ++ LK+ IE + C+I+YGSLPPE R +QA FND ++++D +VA
Sbjct: 404 QKGDAIVAFSRLNLHSLKQRIEEKTGRRCAIIYGSLPPEVRAQQAALFNDPNNDYDFVVA 463
Query: 298 SDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKF---------- 347
SDAIGMGLNL I R++ ++ KFDG + R LT PE+KQI GRAGRY S
Sbjct: 464 SDAIGMGLNLEIRRVVLESVTKFDGSQNRLLTFPEIKQIGGRAGRYRSAQNPDGSTDETE 523
Query: 348 PVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY-SRLHPDSSLYGILEHFL 406
VG VT +D DL + ++ +E+A + P ++ + S PD+ L IL+
Sbjct: 524 KVGLVTTMDKADLRSVQRAFQRTVDDIEAACIQPPAGIVERFASYFPPDTPLSYILKKIQ 583
Query: 407 ENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQ---GLTQFA 463
E A +S Y ++L++A +I +PL +H++ FC PV + + + + L +
Sbjct: 584 ETATVSSLYRIGLGNDILEIADIIQDIPLTIHDRMTFCYLPVALRAERAVEVLRALARIV 643
Query: 464 TNYSKKGIVQLREI 477
SK ++ + EI
Sbjct: 644 ATNSKGDLLDIEEI 657
>gi|326474037|gb|EGD98046.1| mitochondrial ATP-dependent RNA helicase [Trichophyton tonsurans
CBS 112818]
Length = 772
Score = 325 bits (832), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 187/454 (41%), Positives = 263/454 (57%), Gaps = 25/454 (5%)
Query: 35 IGAFASVDVIIRSY--------CSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPT 86
+G VD + R Y S + K D P WYP+AR RK+ LHVGPT
Sbjct: 155 MGREGIVDYLRRQYRNHKLDTAFSSTATKSDSLADFRYPAEWYPVARSMQRKIHLHVGPT 214
Query: 87 NSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE--EVDGAKH 144
NSGKT+ AL RLE + SG Y GPLRLLA E+ RLNK +SC LITG E E K
Sbjct: 215 NSGKTYHALQRLEKAKSGFYGGPLRLLAHEIYSRLNKKGISCALITGDEVRVPESGPVKV 274
Query: 145 RAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQ 204
+ TVEM + + + VIDEIQM+ RG+++TRA+LG A ELHLCG+ AVPLIQ+
Sbjct: 275 YSNTVEMVPIGQEVEVGVIDEIQMIADPHRGWAWTRAVLGCQAQELHLCGEERAVPLIQR 334
Query: 205 ILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGK 263
++ + GD +++ +Y+RL+PL + L G ++ GDCIV FSR I+ LK+ IE
Sbjct: 335 LVSLMGDTLEIHNYKRLNPLKTMASSLKGDIRRLEKGDCIVAFSRVGIHSLKQEIEKATG 394
Query: 264 HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV 323
+IVYGSLP E R +QA FND ++++D LVASDAIGMGLNL+ RIIF ++ K
Sbjct: 395 RRAAIVYGSLPAEIRAQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVIKRLPT 454
Query: 324 ELRDLTVPEVKQIAGRAGRYGS------------KFPVGEVTCLDSEDLPLLHKSLLEPS 371
++ L++ EVKQI GRAGRY S K VG VTCLD DLP + ++L +
Sbjct: 455 GIQRLSISEVKQIGGRAGRYRSAAQSSSSTNANEKENVGLVTCLDEADLPYIRAAMLAEA 514
Query: 372 PMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVATVI 430
L++AG+ P +I YS + P + +G + LE ++ +F ++ ++
Sbjct: 515 EPLDAAGILPLDSVIDNYSNMFPPDTPFGYIYQRLERVSRTDPPFFMCKIQDTEATFGLL 574
Query: 431 DQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFA 463
D + L + +K +F +P+ D + ++ + FA
Sbjct: 575 DNIQGLNVIDKMVFMSAPLRATDPVMARVIKAFA 608
>gi|393911127|gb|EFO26445.2| hypothetical protein LOAG_02037 [Loa loa]
Length = 785
Score = 324 bits (831), Expect = 5e-86, Method: Compositional matrix adjust.
Identities = 170/399 (42%), Positives = 251/399 (62%), Gaps = 10/399 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DLT+P+ WYP AR+ R++ H GPTNSGKT++AL + + +G YC PLRLLA EV
Sbjct: 234 LSDLTKPYNWYPKARELFRRIHFHAGPTNSGKTYEALQQFYRAKTGFYCCPLRLLANEVC 293
Query: 119 KRLNKANVSCDLITGQERE-EVDG---AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N+ + CD++TG+ER VD + H A+TVEM V + + AVIDEIQML ++R
Sbjct: 294 QKTNEQGIKCDMVTGEERRYAVDADSPSSHVAMTVEMVPVDVNVEVAVIDEIQMLRDQSR 353
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLGI A E+HLCG+ AAV +++ +L G+ V+V YER +PL L
Sbjct: 354 GWAWTRALLGIAAEEIHLCGEEAAVDIVRGLLDPIGEHVEVHRYERKTPLTVNKEALKKL 413
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N++ GDC+V FS ++ + K + G +++YG+LPP T+ QA FN+ S + +V
Sbjct: 414 DNVKDGDCLVCFSVSMLFSVAKTLMKLGVQ-PTVIYGALPPWTKLNQAKTFNEMSRKPNV 472
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 354
+VA+DA+GMGLNLNI RIIF +F E + V Q+AGRAGR+ S + G VT
Sbjct: 473 MVATDAVGMGLNLNIRRIIFV---QFPFGEHQ--ANYHVMQVAGRAGRFQSAYQKGWVTT 527
Query: 355 LDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSEN 414
L D+PLL + EP +E+AG+ P + + +S P +S I++ F+ + LS+
Sbjct: 528 LRPADMPLLEAFMKEPIKPIETAGIAPTSEQLETFSYHLPHASFLSIIDMFISISSLSKK 587
Query: 415 YFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDD 453
+ + E+ K+A +ID +PL + KY FC +PVDM D
Sbjct: 588 FHLCDIEQFRKLAELIDDIPLSIKVKYAFCTAPVDMEVD 626
>gi|296420756|ref|XP_002839934.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295636142|emb|CAZ84125.1| unnamed protein product [Tuber melanosporum]
Length = 745
Score = 323 bits (829), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 179/414 (43%), Positives = 254/414 (61%), Gaps = 24/414 (5%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D+ P WYP+AR+ R LHVGPTNSGKT+ AL RLE ++ GIY GPLRLLA E+ +R
Sbjct: 173 DMRFPQEWYPMARQFKRTWHLHVGPTNSGKTYNALKRLEEAADGIYAGPLRLLAHEIFER 232
Query: 121 LNKANVSCDLITGQEREEV-DGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
+N + C+L+TG + V + A + TVEM D+ + + AV+DEIQM+G + RG+++T
Sbjct: 233 MNSKGIPCNLVTGDDMRIVSETAAISSSTVEMVDLNREVEVAVLDEIQMIGDEDRGWAWT 292
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLG-SFSNIQ 238
+ALLG+ A E+H+CG+ V LI+ + GD+ V +Y+RL PL + LG + IQ
Sbjct: 293 QALLGVRAKEVHMCGEERTVDLIKSLAANVGDECIVHNYKRLGPLEVMKESLGGDLTKIQ 352
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
GDC+VTFSR +I+ +KK IE C+++YGSLPPETR+ QA FND S +DVLVAS
Sbjct: 353 KGDCVVTFSRKSIFAMKKEIEKVTGLRCAVIYGSLPPETRSLQARYFNDPESGYDVLVAS 412
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG-------------- 344
DA+GMGLNL+I R+IF T K++G E ++VP +KQIAGRAGRY
Sbjct: 413 DAVGMGLNLSIKRMIFETTIKWNGSEYEPISVPHIKQIAGRAGRYKVAVSKHNIQADETI 472
Query: 345 SKFP----VGEVTCLDSEDLPLLHKSL-LEPSPMLESAGLFPNFDLIYMYSRLH-PDSSL 398
+ P VG VT LD D L ++ + P P + +AG+ PN I ++ L+ PD L
Sbjct: 473 APLPAAPSVGLVTTLDEVDYKSLKYAMSVTPKP-IATAGILPNSSQIEEFASLYPPDKEL 531
Query: 399 YGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMN 451
L+ E + + E +K A +++ + LR+ EK FC++P+ N
Sbjct: 532 SFTLKTMDEAMHTRKLFHICRVETQIKTAKLLEGITGLRILEKLQFCMAPIGRN 585
>gi|326478234|gb|EGE02244.1| mitochondrial ATP-dependent RNA helicase Suv3 [Trichophyton equinum
CBS 127.97]
Length = 772
Score = 323 bits (829), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 187/454 (41%), Positives = 263/454 (57%), Gaps = 25/454 (5%)
Query: 35 IGAFASVDVIIRSY--------CSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPT 86
+G VD + R Y S + K D P WYP+AR RK+ LHVGPT
Sbjct: 155 MGREGIVDYLRRQYRNHKLDTAFSSTATKSDSLADFRYPAEWYPVARSMQRKIHLHVGPT 214
Query: 87 NSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE--EVDGAKH 144
NSGKT+ AL RLE + SG Y GPLRLLA E+ RLNK +SC LITG E E K
Sbjct: 215 NSGKTYHALQRLEKAKSGFYGGPLRLLAHEIYSRLNKKGISCALITGDEVRVPESGPVKV 274
Query: 145 RAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQ 204
+ TVEM + + + VIDEIQM+ RG+++TRA+LG A ELHLCG+ AVPLIQ+
Sbjct: 275 YSNTVEMVPIGQEVEVGVIDEIQMIADPHRGWAWTRAVLGCQAQELHLCGEERAVPLIQR 334
Query: 205 ILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGK 263
++ + GD +++ +Y+RL+PL + L G ++ GDCIV FSR I+ LK+ IE
Sbjct: 335 LVSLMGDTLEIHNYKRLNPLKTMASSLKGDIRRLEKGDCIVAFSRVGIHSLKQEIEKATG 394
Query: 264 HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV 323
+IVYGSLP E R +QA FND ++++D LVASDAIGMGLNL+ RIIF ++ K
Sbjct: 395 RRAAIVYGSLPAEIRAQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVIKRLPT 454
Query: 324 ELRDLTVPEVKQIAGRAGRYGS------------KFPVGEVTCLDSEDLPLLHKSLLEPS 371
++ L++ EVKQI GRAGRY S K VG VTCLD DLP + ++L +
Sbjct: 455 GIQRLSISEVKQIGGRAGRYRSAAQSSSSTNANEKENVGLVTCLDEADLPYIRAAMLAEA 514
Query: 372 PMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVATVI 430
L++AG+ P +I YS + P + +G + LE ++ +F ++ ++
Sbjct: 515 EPLDAAGILPLDFVIDNYSNMFPPDTPFGYIYQRLERVSRTDPPFFMCKIQDTEATFGLL 574
Query: 431 DQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFA 463
D + L + +K +F +P+ D + ++ + FA
Sbjct: 575 DNIQGLNVIDKMVFMSAPLRATDPVMARVIKAFA 608
>gi|315052550|ref|XP_003175649.1| ATP-dependent RNA helicase suv3 [Arthroderma gypseum CBS 118893]
gi|311340964|gb|EFR00167.1| ATP-dependent RNA helicase suv3 [Arthroderma gypseum CBS 118893]
Length = 771
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 185/454 (40%), Positives = 264/454 (58%), Gaps = 25/454 (5%)
Query: 35 IGAFASVDVIIRSY--------CSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPT 86
+G VD + R Y S + K D P WYP+AR RK+ LHVGPT
Sbjct: 155 MGREGIVDYLRRQYRNHKLDTAFSSTATKTDSLADFRYPAEWYPVARSMQRKIHLHVGPT 214
Query: 87 NSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE--EVDGAKH 144
NSGKT+ AL RLE + SG Y GPLRLLA E+ RLNK +SC LITG E E K
Sbjct: 215 NSGKTYHALQRLEKAKSGFYGGPLRLLAHEIYSRLNKKGISCALITGDEVRVPESGPVKV 274
Query: 145 RAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQ 204
+ TVEM + + + VIDEIQM+ RG+++TRA+LG A ELHLCG+ AVPLI++
Sbjct: 275 YSNTVEMVPIGQEVEVGVIDEIQMIADPHRGWAWTRAVLGCQAQELHLCGEERAVPLIRR 334
Query: 205 ILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGK 263
++ + GD +++ +Y+RL+PL + L G ++ GDCIV FSR I+ LK+ IE
Sbjct: 335 LVSLMGDTLEIHNYKRLNPLKTMASSLKGDIRRLEKGDCIVAFSRVGIHSLKQEIEKTTG 394
Query: 264 HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV 323
+IVYGSLP E R +QA FND ++++D LVASDAIGMGLNL+ RIIF ++ K
Sbjct: 395 RRAAIVYGSLPAEIRAQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVIKRLPT 454
Query: 324 ELRDLTVPEVKQIAGRAGRYGS------------KFPVGEVTCLDSEDLPLLHKSLLEPS 371
++ L++ EVKQI GRAGRY S K VG VTCLD DLP + +++ +
Sbjct: 455 GIQRLSISEVKQIGGRAGRYRSAAQSSNSTNVNEKENVGLVTCLDEADLPYIRAAMMAEA 514
Query: 372 PMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVI 430
L++AG+ P +I YS + P + +G + LE +++ +F ++ ++
Sbjct: 515 EPLDAAGILPLDSVIDSYSNMFPPDTPFGYIYQRLERVSRTDSPFFMCKIQDTEATFGLL 574
Query: 431 DQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFA 463
D + L + +K +F +P+ D + ++ + FA
Sbjct: 575 DNIQGLNVIDKMVFMSAPLRATDPVMARVIKAFA 608
>gi|322702017|gb|EFY93765.1| ATP-dependent RNA helicase SUV3 precursor [Metarhizium acridum CQMa
102]
Length = 717
Score = 323 bits (828), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 184/453 (40%), Positives = 265/453 (58%), Gaps = 21/453 (4%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D PH W+P R R + +HVGPTNSGKT+ AL LE+S +G+Y GPLRLLA EV +R
Sbjct: 141 DFRFPHEWFPATRTMQRTIHVHVGPTNSGKTYNALKALENSKTGVYAGPLRLLATEVYQR 200
Query: 121 LNKANVSCDLITGQE-REEVDGAKH-RAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSF 178
L C LITG+E R D ++ + TVEM + + +D AVIDEIQM+ RG ++
Sbjct: 201 LTAKGRPCALITGEEIRIPEDTDQYFSSCTVEMVPLNTKFDVAVIDEIQMIADPERGNAW 260
Query: 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSNI 237
T A+LG+ ANE+HLCG+ VPL+Q + GD V YERLSPL ++ + G +SN+
Sbjct: 261 TTAVLGVQANEVHLCGEDRTVPLLQALCASIGDKCVVHRYERLSPLKTMDSAIKGDYSNL 320
Query: 238 QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 297
Q GD IV FSR +++ LK+ IE+ C+I+YGSLPPE R +QA FND ++++D +VA
Sbjct: 321 QKGDAIVAFSRLSLHVLKRNIETATGRRCAIIYGSLPPEVRVQQAALFNDPNNDYDFVVA 380
Query: 298 SDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY-------------G 344
SDAIGMGLNL I R++ ++ KFDG + R LT PE+KQI GRAGRY
Sbjct: 381 SDAIGMGLNLEIRRVVLESITKFDGNQNRLLTYPEIKQIGGRAGRYRTAQSAVGVNAEEA 440
Query: 345 SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY-SRLHPDSSLYGILE 403
K VG VT +D DL + K+ + +E A + P ++ + S PD+ L IL
Sbjct: 441 EKEKVGLVTTMDQADLRNVEKAFQKKVNDIEYASIQPPAGIVERFASYFPPDTPLSFILM 500
Query: 404 HFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISS---QGLT 460
A + Y + L++A +I LPL ++++ FC PV + + + + L
Sbjct: 501 RIKAAATVGPRYRLNVSSDALEIADIIQDLPLTIYDRLTFCYLPVALRAEGAVDVLRALA 560
Query: 461 QFATNYSKKGIVQLREIFTPGLGSLRVAEFPVG 493
+ N S ++ ++EI L +++ ++P G
Sbjct: 561 RVLANNSAGDLLSIKEIPLEFL-EVKMEDYPGG 592
>gi|358396700|gb|EHK46081.1| hypothetical protein TRIATDRAFT_88541 [Trichoderma atroviride IMI
206040]
Length = 762
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 180/434 (41%), Positives = 254/434 (58%), Gaps = 17/434 (3%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D P+ W+P R R + +HVGPTNSGKT+ AL LESS G+Y GPLRLLA EV +R
Sbjct: 201 DFRFPYEWFPATRTMQRTIHVHVGPTNSGKTYNALKALESSKCGVYAGPLRLLATEVYQR 260
Query: 121 LNKANVSCDLITGQERE--EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSF 178
N+ C LITG+E E + TVEM + + +D AVIDEIQM+ RG ++
Sbjct: 261 FKAKNIPCALITGEEVRIPENTDQYFSSCTVEMIPLNTRFDVAVIDEIQMIADADRGNAW 320
Query: 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNI- 237
T A+LG+ A E+H+CG+ AV +IQQ+ GD V YERLSPL ++ PL + N+
Sbjct: 321 TAAVLGVQAKEVHVCGEERAVKVIQQMCASVGDKCVVHRYERLSPLKTMDKPLDNDYNLL 380
Query: 238 QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 297
Q GD IV FSR ++ LK +IE + C+I+YGSLPPE R +QA FND +++D +VA
Sbjct: 381 QKGDAIVAFSRVNLHSLKTSIERKTGRRCAIIYGSLPPEVRAQQAALFNDPDNDYDFVVA 440
Query: 298 SDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS----------KF 347
SDAIGMGLNL I R+I ++ KFDG + R LT PE+KQI GRAGRY S
Sbjct: 441 SDAIGMGLNLEIRRVIMESVTKFDGSQNRLLTFPEIKQIGGRAGRYRSAQNPDGSTDESE 500
Query: 348 PVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHP-DSSLYGILEHFL 406
VG VT ++ DL + ++ +++A + P ++ ++ P D+ L IL+
Sbjct: 501 KVGLVTTMERADLRSVQRAFQRTVEDIQAACIQPPAGIVERFASYFPTDTPLSYILKKIQ 560
Query: 407 ENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISS---QGLTQFA 463
E A +S Y ++L++A +I +PL +H++ FC PV + D + + L Q
Sbjct: 561 ETATVSSLYKMGLGSDILEIADIIQDIPLTIHDRLTFCYLPVALRADRAVDVLRALAQVV 620
Query: 464 TNYSKKGIVQLREI 477
SK ++ + EI
Sbjct: 621 ATNSKGDLLDIEEI 634
>gi|303312633|ref|XP_003066328.1| Helicase conserved C-terminal domain containing protein
[Coccidioides posadasii C735 delta SOWgp]
gi|240105990|gb|EER24183.1| Helicase conserved C-terminal domain containing protein
[Coccidioides posadasii C735 delta SOWgp]
Length = 724
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 183/426 (42%), Positives = 248/426 (58%), Gaps = 20/426 (4%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
D P WYP AR R + LHVGPTNSGKT+ AL RLE + SG Y GPLRLLA EV
Sbjct: 167 LADYRFPAEWYPAARALQRTIHLHVGPTNSGKTYHALKRLEEAKSGFYAGPLRLLAHEVY 226
Query: 119 KRLNKANVSCDLITGQEREEVDGAKHR--AVTVEMADVVSDYDCAVIDEIQMLGCKTRGF 176
R N +SC LITG E + +G + TVEMA + + D AVIDEIQM+G + RG+
Sbjct: 227 SRFNAKGISCGLITGDEVKVPEGTPPTLYSNTVEMAPLGLEVDVAVIDEIQMIGDRQRGW 286
Query: 177 SFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFS 235
++TRALLG A E+HLCG+ VPLI+++ +TGD +++ +Y+RL+PL+P+ L G+
Sbjct: 287 AWTRALLGAPAKEVHLCGEERVVPLIRELAALTGDKLEIHNYKRLNPLIPMTKSLKGNLQ 346
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
+Q GDC+V FSR I+ LK+ IE +IVYG LP E R++QA FN+ +++D L
Sbjct: 347 KLQKGDCVVAFSRLGIHALKQEIEKATGRRAAIVYGGLPAEIRSQQADLFNNPDNDYDFL 406
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS---------- 345
VASDAIGMGLNL+ RIIF ++ K V L L+V +VKQI GRAGRY S
Sbjct: 407 VASDAIGMGLNLSCKRIIFESVIKRSPVGLERLSVSQVKQIGGRAGRYRSVADAMDKSKP 466
Query: 346 ------KFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLY 399
VG VTCL+ DLP + K L + + +AG+ P +I ++ P + +
Sbjct: 467 SKRSEEDQNVGFVTCLEDVDLPHIQKCLRAEAEPINAAGILPQDSMITAFTDHFPSDTPF 526
Query: 400 GILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQG 458
L L N + FF V ++D +P L + +K +F +P D S+
Sbjct: 527 RYLLQRLWNVSQTHPRFFMCDLHSSDVQEILDDVPGLSVTDKLVFLSAPTSTADPTSALT 586
Query: 459 LTQFAT 464
L FAT
Sbjct: 587 LKAFAT 592
>gi|115401322|ref|XP_001216249.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114190190|gb|EAU31890.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 630
Score = 323 bits (827), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 189/438 (43%), Positives = 258/438 (58%), Gaps = 21/438 (4%)
Query: 44 IIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSS 103
+ Y + + ++ DL P WYP AR R + LHVGPTNSGKT++AL RLE+S S
Sbjct: 49 VTSKYSTPNLEQQKKVADLRFPAEWYPQARAMQRTIHLHVGPTNSGKTYRALKRLEASES 108
Query: 104 GIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAV--TVEMADVVSDYDCA 161
G Y GPLRLLA EV R +SC L+TG E + DG R TVEM ++ YD
Sbjct: 109 GFYAGPLRLLAQEVYGRFQSTGLSCSLVTGDEVKIPDGQSPRITSNTVEMVNLSHPYDVG 168
Query: 162 VIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERL 221
VIDEIQM+ RG+++TRA+LG A ELHLCG+ AVPLI+++ +TGD +++ YERL
Sbjct: 169 VIDEIQMIADSRRGWAWTRAVLGSRAKELHLCGEQRAVPLIRELAALTGDKLEIHRYERL 228
Query: 222 SPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 280
+PL + L G N+Q GDC+V FSR I+ LK IE +IVYGSLP E RT+
Sbjct: 229 NPLKVADQSLKGDLRNLQKGDCVVAFSRVGIHALKADIEKVTGRRAAIVYGSLPAEIRTQ 288
Query: 281 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 340
QA+ FND ++++D LVASDAIGMGLNL++ RI+F T+ K L+ L+VPE+KQIAGRA
Sbjct: 289 QASLFNDPNNDYDYLVASDAIGMGLNLSVKRIVFETIVKRVPGGLQRLSVPEIKQIAGRA 348
Query: 341 GRYGSKFP------------VGEVTCLDSEDLPLLHKSL-LEPSPMLESAGLFPNFDLIY 387
GRY S VG VT L+ DLP + +++ +EP P L +AG+ P D +Y
Sbjct: 349 GRYRSAAQHASKKNADENSNVGIVTSLEEVDLPHIRQAMGVEPPP-LAAAGIIPP-DPVY 406
Query: 388 MY--SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFC 444
+ P L I++ E ++ +F + L+ A VID + L+ ++ F
Sbjct: 407 QRFAAYFPPGVPLEYIIKRLAEVSQTHPLFFMCDTRPQLENAEVIDTVSGLQFEDQLTFM 466
Query: 445 ISPVDMNDDISSQGLTQF 462
+P+ D S F
Sbjct: 467 AAPIQTRDIASRDAAIAF 484
>gi|296815444|ref|XP_002848059.1| ATP-dependent RNA helicase suv3 [Arthroderma otae CBS 113480]
gi|238841084|gb|EEQ30746.1| ATP-dependent RNA helicase suv3 [Arthroderma otae CBS 113480]
Length = 752
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 184/435 (42%), Positives = 259/435 (59%), Gaps = 19/435 (4%)
Query: 47 SYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIY 106
S S + ++ D P WYP+AR RK+ LHVGPTNSGKT+ AL RLE + SG Y
Sbjct: 157 STFSSTAAERDSLADFRFPAEWYPVARSMQRKIHLHVGPTNSGKTYHALQRLEKAKSGFY 216
Query: 107 CGPLRLLAWEVAKRLNKANVSCDLITGQERE--EVDGAKHRAVTVEMADVVSDYDCAVID 164
GPLRLLA E+ RLNK +SC LITG E E D K + TVEM + + + VID
Sbjct: 217 GGPLRLLAHEIYSRLNKKGISCALITGDEVRVPEGDPVKIFSNTVEMVPIGQEVEVGVID 276
Query: 165 EIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL 224
EIQM+ RG+++TRA+LG A ELHLCG+ AVPLI++++ + GD +++ +Y+RL+PL
Sbjct: 277 EIQMIADPHRGWAWTRAVLGCQAQELHLCGEERAVPLIRRLVSLMGDTLEIHNYKRLNPL 336
Query: 225 VPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQAT 283
+ L G ++ GDC+V FSR I+ LK+ IE +IVYGSLP E R +QA
Sbjct: 337 KTMASSLKGDIKRLEKGDCVVAFSRVGIHSLKQEIEKTTGRRAAIVYGSLPAEIRAQQAD 396
Query: 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
FND ++++D LVASDAIGMGLNL+ RIIF ++ K ++ L++ EVKQI GRAGRY
Sbjct: 397 LFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVMKRLPTGIQRLSISEVKQIGGRAGRY 456
Query: 344 GS------------KFPVGEVTCLDSEDLPLLHKSLL-EPSPMLESAGLFPNFDLIYMYS 390
S K VG VTCLD DLP + +++ EP P L++AG+ P I YS
Sbjct: 457 RSAAQPSNSSKNDDKENVGLVTCLDEADLPYIRAAMMAEPQP-LDAAGILPLDSAIDNYS 515
Query: 391 RLHPDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPV 448
+ P + +G + LE A+ +F ++ ++D + L +K +F +P+
Sbjct: 516 NMFPPDTPFGYVYQRLERVARTDSPFFMCKIQDTEATFGLLDNIQGLNAIDKMVFMSAPL 575
Query: 449 DMNDDISSQGLTQFA 463
D + ++ + FA
Sbjct: 576 RATDPVMARVIRAFA 590
>gi|119192696|ref|XP_001246954.1| hypothetical protein CIMG_00725 [Coccidioides immitis RS]
gi|392863804|gb|EAS35434.2| mitochondrial ATP-dependent RNA helicase Suv3 [Coccidioides immitis
RS]
Length = 724
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 183/426 (42%), Positives = 248/426 (58%), Gaps = 20/426 (4%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
D P WYP AR R + LHVGPTNSGKT+ AL RLE + SG Y GPLRLLA EV
Sbjct: 167 LADYRFPAEWYPAARALQRTIHLHVGPTNSGKTYHALKRLEEAKSGFYAGPLRLLAHEVY 226
Query: 119 KRLNKANVSCDLITGQEREEVDGAKHR--AVTVEMADVVSDYDCAVIDEIQMLGCKTRGF 176
R N +SC LITG E + +G + TVEMA + + D AVIDEIQM+G + RG+
Sbjct: 227 SRFNAKGISCGLITGDEVKVPEGTPPTLYSNTVEMAPLGLEVDVAVIDEIQMIGDRQRGW 286
Query: 177 SFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFS 235
++TRALLG A E+HLCG+ VPLI+++ +TGD +++ +Y+RL+PL+P+ L G+
Sbjct: 287 AWTRALLGAPAKEIHLCGEERVVPLIRELAALTGDKLEIHNYKRLNPLIPMTKSLKGNLQ 346
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
+Q GDC+V FSR I+ LK+ IE +IVYG LP E R++QA FN+ +++D L
Sbjct: 347 KLQKGDCVVAFSRLGIHALKQEIEKATGRRAAIVYGGLPAEIRSQQADLFNNPDNDYDFL 406
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS---------- 345
VASDAIGMGLNL+ RIIF ++ K V L L+V +VKQI GRAGRY S
Sbjct: 407 VASDAIGMGLNLSCKRIIFESVIKRSPVGLERLSVSQVKQIGGRAGRYRSVADAMDKSKP 466
Query: 346 ------KFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLY 399
VG VTCL+ DLP + K L + + +AG+ P +I ++ P + +
Sbjct: 467 SKRSEEDQNVGFVTCLEDVDLPHIQKCLRAEAEPINAAGILPQDSMITAFTDHFPSDTPF 526
Query: 400 GILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQG 458
L L N + FF V ++D +P L + +K +F +P D S+
Sbjct: 527 RYLLQRLWNVSQTHPRFFMCDLHSSDVQEILDDVPGLSVTDKLVFLSAPTSTADPTSALT 586
Query: 459 LTQFAT 464
L FAT
Sbjct: 587 LKAFAT 592
>gi|225558448|gb|EEH06732.1| ATP-dependent RNA helicase SUV3 [Ajellomyces capsulatus G186AR]
Length = 714
Score = 322 bits (824), Expect = 4e-85, Method: Compositional matrix adjust.
Identities = 188/431 (43%), Positives = 258/431 (59%), Gaps = 30/431 (6%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
DL P WYP AR R + LHVGPTNSGKT++AL RLE++ +G Y GPLRLLA E+
Sbjct: 139 LADLRNPTEWYPAARSLHRTIHLHVGPTNSGKTYRALKRLETAKTGFYAGPLRLLAHEIY 198
Query: 119 KRLNKANVSCDLITGQE----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
RLN + C L+TG E +++V G + TVEM + D + VIDEIQM+ R
Sbjct: 199 TRLNAKGIPCGLVTGDEVRISQDQVPGIF--SNTVEMVPLGQDVEVGVIDEIQMIADPHR 256
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GS 233
G+++TRALLG A+ELHLCG+ VPLI+ + + GD +++ YERL+PL +N L G+
Sbjct: 257 GWAWTRALLGARAHELHLCGEERVVPLIRDLAGLMGDKLEIHHYERLNPLKAMNRSLKGN 316
Query: 234 FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293
SN+Q GDC+V FSR I+ LK+ IE +IVYGSLP E R++QA FND ++++D
Sbjct: 317 LSNLQKGDCVVAFSRIGIHGLKQDIEKATGRRAAIVYGSLPAEIRSQQADLFNDPNNDYD 376
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---------- 343
LVASDAIGMGLNL+ RIIF ++ + L L+V +VKQI GRAGRY
Sbjct: 377 FLVASDAIGMGLNLSCKRIIFESVVRKLPTGLTRLSVSQVKQIGGRAGRYRSATDSRNVK 436
Query: 344 GSKFP---------VGEVTCLDSEDLPLLHKSL-LEPSPMLESAGLFPNFDLIYMYSRLH 393
GS+ VG VT L+ DLP + K+L EP P+L SAGL P +I +S
Sbjct: 437 GSRVADSAKNAETNVGFVTSLEDVDLPYIRKALNTEPEPIL-SAGLLPPDYIIKGFSEHF 495
Query: 394 PDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMN 451
P ++ + + L N A++ N+F +C+ + A ID + L + +K +F +P M
Sbjct: 496 PANTPFAYILQRLHNIAQVDPNFFLNDCQSHAEAAEAIDSVKGLSMDDKLVFLSAPTHMR 555
Query: 452 DDISSQGLTQF 462
D S +F
Sbjct: 556 DPQMSTIFKEF 566
>gi|320033564|gb|EFW15511.1| ATP-dependent RNA helicase SUV3 [Coccidioides posadasii str.
Silveira]
Length = 724
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 182/426 (42%), Positives = 248/426 (58%), Gaps = 20/426 (4%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
D P WYP AR R + LHVGPTNSGKT+ AL RLE + SG Y GPLRLLA EV
Sbjct: 167 LADYRFPAEWYPAARALQRTIHLHVGPTNSGKTYHALKRLEEAKSGFYAGPLRLLAHEVY 226
Query: 119 KRLNKANVSCDLITGQEREEVDGAKHR--AVTVEMADVVSDYDCAVIDEIQMLGCKTRGF 176
R N +SC LITG E + +G + TVEMA + + + AVIDEIQM+G + RG+
Sbjct: 227 SRFNAKGISCGLITGDEVKVPEGTPPTLYSNTVEMAPLGVEVEVAVIDEIQMIGDRQRGW 286
Query: 177 SFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFS 235
++TRALLG A E+HLCG+ VPLI+++ +TGD +++ +Y+RL+PL+P+ L G+
Sbjct: 287 AWTRALLGAPAKEVHLCGEERVVPLIRELAALTGDKLEIHNYKRLNPLIPMTKSLKGNLQ 346
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
+Q GDC+V FSR I+ LK+ IE +IVYG LP E R++QA FN+ +++D L
Sbjct: 347 KLQKGDCVVAFSRLGIHALKQEIEKATGRRAAIVYGGLPAEIRSQQADLFNNPDNDYDFL 406
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS---------- 345
VASDAIGMGLNL+ RIIF ++ K V L L+V +VKQI GRAGRY S
Sbjct: 407 VASDAIGMGLNLSCKRIIFESVIKRSPVGLERLSVSQVKQIGGRAGRYRSVADAMDKSKP 466
Query: 346 ------KFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLY 399
VG VTCL+ DLP + K L + + +AG+ P +I ++ P + +
Sbjct: 467 SKRSEEDQNVGFVTCLEDVDLPHIQKCLRAEAEPINAAGILPQDSMITAFTDHFPSDTPF 526
Query: 400 GILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQG 458
L L N + FF V ++D +P L + +K +F +P D S+
Sbjct: 527 RYLLQRLWNVSQTHPRFFMCDLHSSDVQEILDDVPGLSVTDKLVFLSAPTSTADPTSALT 586
Query: 459 LTQFAT 464
L FAT
Sbjct: 587 LKAFAT 592
>gi|327299422|ref|XP_003234404.1| mitochondrial ATP-dependent RNA helicase [Trichophyton rubrum CBS
118892]
gi|326463298|gb|EGD88751.1| mitochondrial ATP-dependent RNA helicase [Trichophyton rubrum CBS
118892]
Length = 771
Score = 321 bits (823), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 184/454 (40%), Positives = 262/454 (57%), Gaps = 25/454 (5%)
Query: 35 IGAFASVDVIIRSY--------CSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPT 86
+G VD + R Y S + K D P WYP+AR RK+ LHVGPT
Sbjct: 155 MGREGIVDYLRRQYRNHKLDTAFSSTATKSDSLADFRYPAEWYPVARSMQRKIHLHVGPT 214
Query: 87 NSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE--EVDGAKH 144
NSGKT+ AL RLE + SG Y GPLRLLA E+ RLNK +SC LITG E E K
Sbjct: 215 NSGKTYHALQRLEKAKSGFYGGPLRLLAHEIYSRLNKKGISCALITGDEVRVPENGPVKV 274
Query: 145 RAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQ 204
+ TVEM + + + VIDEIQM+ RG+++TRA+LG A ELHLCG+ AVPLIQ+
Sbjct: 275 YSNTVEMVPIGQEVEVGVIDEIQMIADPHRGWAWTRAVLGCQAQELHLCGEERAVPLIQR 334
Query: 205 ILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGK 263
++ + GD +++ +Y+RL+PL + L G ++ GDCIV FSR I+ LK+ IE
Sbjct: 335 LVSLMGDTLEIHNYKRLNPLKTMASSLKGDIRRLEKGDCIVAFSRVGIHSLKQEIEKVTG 394
Query: 264 HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV 323
+IVYGSLP E R +QA FND ++++D LVASDAIGMGLNL+ RIIF ++ K
Sbjct: 395 RRAAIVYGSLPAEIRAQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVIKRLPT 454
Query: 324 ELRDLTVPEVKQIAGRAGRY------------GSKFPVGEVTCLDSEDLPLLHKSLLEPS 371
++ L++ E+KQI GRAGRY K VG VTCLD DLP + +++ +
Sbjct: 455 GIQRLSISEIKQIGGRAGRYRSAAQSSSSRIANEKENVGLVTCLDEADLPYIRAAMMAEA 514
Query: 372 PMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVATVI 430
L++AG+ P +I YS + P + +G + LE ++ +F ++ ++
Sbjct: 515 EPLDAAGILPLDSVIDNYSNMFPPDTPFGYIYQRLERVSRTDPPFFMCKIQDTEATFGLL 574
Query: 431 DQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFA 463
D + L + +K +F +P+ D + ++ + FA
Sbjct: 575 DNIQGLNVIDKMVFMSAPLRATDPVMARVIKAFA 608
>gi|170580023|ref|XP_001895080.1| Helicase conserved C-terminal domain containing protein [Brugia
malayi]
gi|158598094|gb|EDP36072.1| Helicase conserved C-terminal domain containing protein [Brugia
malayi]
Length = 635
Score = 321 bits (822), Expect = 6e-85, Method: Compositional matrix adjust.
Identities = 169/399 (42%), Positives = 253/399 (63%), Gaps = 10/399 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DLT+P+ WYP AR+ R++ H GPTNSGKT++AL + + +G YC PLRLLA EV
Sbjct: 100 LSDLTKPYNWYPKARELFRRIHFHAGPTNSGKTYEALQQFYQAKTGFYCCPLRLLANEVC 159
Query: 119 KRLNKANVSCDLITGQERE-EVDG---AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N+ + CD+ITG+ER +D + H A+TVEM V + + AVIDEIQML ++R
Sbjct: 160 EKTNEKGIKCDMITGEERRYAIDADNPSSHVAMTVEMVPVDVNVEIAVIDEIQMLRDQSR 219
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLGI A E+HLCG+ AAV +++ +L G+ V+V YER +PL L
Sbjct: 220 GWAWTRALLGIAAKEIHLCGEEAAVDIVRSLLDPIGEHVEVHRYERKTPLNVNKEALKKL 279
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
+N++ GDC+V FS ++ + K++ G +++YG+LPP T+ QA FN+ S + +V
Sbjct: 280 NNVKDGDCLVCFSVSMLFSVAKSLMKLGVQ-PTVIYGALPPWTKLNQAKTFNEMSRKPNV 338
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 354
+VA+DA+GMGLNLNI RIIF +F E + V Q+AGRAGR+ S + G VT
Sbjct: 339 MVATDAVGMGLNLNIRRIIFV---QFPFGEHQ--ANYHVMQVAGRAGRFQSAYQKGWVTT 393
Query: 355 LDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSEN 414
L D+ LL + EP +E+AG+ P + + +S P +S I++ F+ + LS+
Sbjct: 394 LRPTDMRLLEAFMKEPIKPIETAGIAPTSEQLETFSYHLPHASFLSIIDMFISISSLSKK 453
Query: 415 YFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDD 453
+ + E+ K+A +ID +PL + KY FC +PVDM+ D
Sbjct: 454 FHLCDIEQFRKLAELIDDVPLSIKVKYAFCTAPVDMDVD 492
>gi|400593909|gb|EJP61799.1| ATP-dependent RNA helicase SUV3 [Beauveria bassiana ARSEF 2860]
Length = 769
Score = 320 bits (820), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 182/456 (39%), Positives = 260/456 (57%), Gaps = 25/456 (5%)
Query: 31 SEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGK 90
++I AF S V + + G + + +L PH W+P R RK+ +HVGPTNSGK
Sbjct: 171 QKEIQYAFQSF-VTHKRFSKGVEESQANILNLRFPHEWFPATRSMQRKIHVHVGPTNSGK 229
Query: 91 THQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQE---REEVDGAKHRAV 147
T+ AL LE+S G+Y GPLRLLA EV RL N+ C LITG+E E+ D +
Sbjct: 230 TYNALKALEASKRGVYAGPLRLLAAEVYHRLRAKNLPCALITGEEVRIPEDTD-EYFSSC 288
Query: 148 TVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQ 207
TVEM + +D AVIDEIQM+G + RG ++T A LG+ A E+H+CG+ V LI+ +
Sbjct: 289 TVEMVPLNRKFDVAVIDEIQMIGNEERGNAWTTAFLGVQAKEVHVCGEERTVSLIENLCA 348
Query: 208 VTGDDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLC 266
GD+ V YERLSPL ++ L G +S ++ GD IV FSR +++ LK+ +E C
Sbjct: 349 TIGDECIVHRYERLSPLKTMSTALEGKYSRLEKGDAIVAFSRLSLHALKRQVEQETGRRC 408
Query: 267 SIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELR 326
+I+YG+LPPE R +QA FND +++D +VASDAIGMGLNL I R+IF ++ KFDGV+ R
Sbjct: 409 AIIYGTLPPEVRVQQAALFNDPDNDYDYVVASDAIGMGLNLEIKRVIFESVHKFDGVQHR 468
Query: 327 DLTVPEVKQIAGRAGRYGS------------------KFPVGEVTCLDSEDLPLLHKSLL 368
L+VPE KQI GRAGRY S + VG VT +D +D+ + K+
Sbjct: 469 MLSVPEFKQIGGRAGRYRSAQAAQVGEGSVADPAPDVEQKVGYVTAMDRQDVRSITKAFQ 528
Query: 369 EPSPMLESAGLFPNFDLIYMY-SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVA 427
++ A + P ++ + S PD+ L IL A +S Y L++A
Sbjct: 529 HDVEDIQHAYIQPPPSVVERFASYFPPDTPLSFILTRIKAAANVSPLYRLNISSSALEIA 588
Query: 428 TVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFA 463
+I LPL ++++ C P+ ++ + S L A
Sbjct: 589 DIIQDLPLSIYDRQSICHMPISLSSEGSIAALRAMA 624
>gi|240274878|gb|EER38393.1| ATP-dependent RNA helicase SUV3 [Ajellomyces capsulatus H143]
Length = 730
Score = 320 bits (819), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 186/431 (43%), Positives = 257/431 (59%), Gaps = 30/431 (6%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
DL P WYP AR R + LHVGPTNSGKT++AL RLE++ +G Y GPLRLLA E+
Sbjct: 155 LADLRNPTEWYPAARSLHRTIHLHVGPTNSGKTYRALKRLETAKTGFYAGPLRLLAHEIY 214
Query: 119 KRLNKANVSCDLITGQE----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
RLN + C L+TG E +++V G + TVEM + D + VIDEIQM+ R
Sbjct: 215 TRLNAKGIPCGLVTGDEVRISQDQVPGIF--SNTVEMVPLGQDVEVGVIDEIQMIADPHR 272
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GS 233
G+++TRALLG A+ELHLCG+ VPLI+ + + GD +++ YERL+PL +N L G+
Sbjct: 273 GWAWTRALLGARAHELHLCGEERVVPLIRDLAGLMGDKLEIHHYERLNPLKAMNRSLKGN 332
Query: 234 FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293
SN+Q GDC+V FSR I+ LK+ IE +IVYGSLP E R++QA FND ++++D
Sbjct: 333 LSNLQKGDCVVAFSRIGIHGLKQDIEKATGRRAAIVYGSLPAEIRSQQADLFNDPNNDYD 392
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS-------- 345
LVASDAIGMGLNL+ RIIF ++ + L L+V +VKQI GRAGRY S
Sbjct: 393 FLVASDAIGMGLNLSCKRIIFESVVRKLPTGLTRLSVSQVKQIGGRAGRYRSATDSRNVK 452
Query: 346 -----------KFPVGEVTCLDSEDLPLLHKSL-LEPSPMLESAGLFPNFDLIYMYSRLH 393
+ VG VT L+ DLP + K+L EP P+L SAGL P +I +S
Sbjct: 453 GFGVAGSAKNAETNVGFVTSLEDVDLPYIRKALNTEPEPIL-SAGLLPPDYIIKGFSEHF 511
Query: 394 PDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMN 451
P ++ + + L N A++ ++F +C+ + A ID + L + +K +F +P M
Sbjct: 512 PANTPFAYILQRLHNIAQVDPSFFLNDCQSHAEAAEAIDSVKGLSMDDKLVFLSAPTHMR 571
Query: 452 DDISSQGLTQF 462
D S +F
Sbjct: 572 DPQMSTIFKEF 582
>gi|212533311|ref|XP_002146812.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Talaromyces marneffei ATCC 18224]
gi|210072176|gb|EEA26265.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Talaromyces marneffei ATCC 18224]
Length = 746
Score = 319 bits (818), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 185/464 (39%), Positives = 264/464 (56%), Gaps = 24/464 (5%)
Query: 47 SYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIY 106
+Y + ++ TDL P WYP AR + R + LHVGPTNSGKT++AL RLE + G Y
Sbjct: 154 TYGNPHAAEQQKVTDLRYPAEWYPFARSRQRTIHLHVGPTNSGKTYRALKRLEEAKLGFY 213
Query: 107 CGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGA-KHRAVTVEMADVVSDYDCAVIDE 165
GPLRLLA EV R N +SC L+TG E D + + TVEM + DYD VIDE
Sbjct: 214 AGPLRLLAQEVYSRFNTQGISCSLVTGDEVRTPDTPPRIISNTVEMVSIYRDYDVGVIDE 273
Query: 166 IQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV 225
IQM+ RG+++TRA LG A ELHLCG+ AVPLI+++ + GD++++ Y+RL+PL
Sbjct: 274 IQMIADPDRGWAWTRAFLGSRAKELHLCGEERAVPLIKELATLMGDNLEIHHYQRLNPLR 333
Query: 226 PLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATR 284
L G ++ GD IVTFSR I+ LK AIE +IVYG LP E RT+QA
Sbjct: 334 AETKSLNGDLRKLRKGDAIVTFSRINIHALKNAIEKTTGKRAAIVYGGLPAEIRTQQANL 393
Query: 285 FNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY- 343
FND +++D LVASDAIGMGLNL R+IF T+ K L +++PE+KQI GRAGRY
Sbjct: 394 FNDPDNDYDYLVASDAIGMGLNLKCKRVIFQTLVKGGKGGLSRISIPEIKQIGGRAGRYR 453
Query: 344 ----------GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIY-MYSRL 392
+ VG VT L+ DLP + ++L P L++AG+ ++Y + S
Sbjct: 454 AANETGKRGDSEEENVGLVTSLEDVDLPFIQQALEFDPPPLKAAGIISTDAMLYRVASYF 513
Query: 393 HPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMN 451
PD SL ++ +K+ +F N L+ A+ +D+ + + ++ +F SP+ +
Sbjct: 514 PPDVSLKFLINRVCSISKVHPLFFMCNARNQLEAASFLDRCDRISIEDQLVFIASPLSVR 573
Query: 452 DD---ISSQGLTQFATNYSKKGIVQLREIFTPGLGSLRVAEFPV 492
D ++G + N S ++ + E+ +L + E PV
Sbjct: 574 DQALMTCARGYIRCVANNSSGRLLDIPEL------NLEILEVPV 611
>gi|322704688|gb|EFY96280.1| ATP-dependent RNA helicase SUV3 [Metarhizium anisopliae ARSEF 23]
Length = 645
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 178/438 (40%), Positives = 255/438 (58%), Gaps = 22/438 (5%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D PH W+P R R + +HVGPTNSGKT+ AL LE+S G+Y GPLRLLA EV +R
Sbjct: 69 DFRFPHEWFPATRTMQRTIHVHVGPTNSGKTYNALKALENSKMGVYAGPLRLLATEVYQR 128
Query: 121 LNKANVSCDLITGQE---REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
L C LITG+E E+ D + TVEM + + +D AVIDEIQM+ RG +
Sbjct: 129 LTAKGRPCALITGEEVRIPEDTD-QYFSSCTVEMVPLNTKFDVAVIDEIQMIADPERGNA 187
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSN 236
+T A+LG+ A E+HLCG+ VPL+Q + GD V YERLSPL ++ + G +SN
Sbjct: 188 WTTAVLGVQAKEVHLCGEDRTVPLLQALCASIGDKCVVHRYERLSPLKTMDSAIKGDYSN 247
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296
+Q GD IV FSR +++ LK+ +E+ C+I+YGSLPPE R +QA FND ++++D +V
Sbjct: 248 LQKGDAIVAFSRLSLHVLKRNVETATGRRCAIIYGSLPPEVRVQQAALFNDPNNDYDFVV 307
Query: 297 ASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY------------- 343
ASDAIGMGLNL I R++ ++ KFDG + R LT PE+KQI GRAGRY
Sbjct: 308 ASDAIGMGLNLEIRRVVLESITKFDGNQNRLLTYPEIKQIGGRAGRYRTAQSAVGVNAEE 367
Query: 344 GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY-SRLHPDSSLYGIL 402
K +G VT +D DL + ++ + +E A + P ++ + S PD+ L IL
Sbjct: 368 AEKEKIGLVTTMDQADLRNVERAFQKKVNDIEYASIQPPAGIVERFASYFPPDTPLSFIL 427
Query: 403 EHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISS---QGL 459
A + Y +VL++A +I LPL ++++ FC PV + + + + L
Sbjct: 428 MRIKAAATVGPRYRLNISSDVLEIADIIQDLPLTIYDRLTFCYLPVALRAEGAVDVLRAL 487
Query: 460 TQFATNYSKKGIVQLREI 477
+ N S ++ ++EI
Sbjct: 488 ARVVANNSAGDLLSIKEI 505
>gi|67537106|ref|XP_662327.1| hypothetical protein AN4723.2 [Aspergillus nidulans FGSC A4]
gi|40741575|gb|EAA60765.1| hypothetical protein AN4723.2 [Aspergillus nidulans FGSC A4]
Length = 785
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 180/414 (43%), Positives = 250/414 (60%), Gaps = 18/414 (4%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
DL P WYP AR R + LHVGPTNSGKT+ AL RLESS SG Y GPLRLLA EV
Sbjct: 120 IADLRYPAEWYPQARAIQRTIHLHVGPTNSGKTYHALKRLESSKSGFYAGPLRLLAQEVY 179
Query: 119 KRLNKANVSCDLITGQEREEVDGAKHRAV--TVEMADVVSDYDCAVIDEIQMLGCKTRGF 176
R + + L+TG E +G K V TVEM ++ Y+ VIDEIQM+ RG+
Sbjct: 180 HRFKSSGIPVSLVTGDEVRLSEGEKAVVVSNTVEMVNLGQTYEVGVIDEIQMIADPRRGW 239
Query: 177 SFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFS 235
++TRALLG A ELHLCG+ VPLI+Q+ + GD + + YERL+PL +N L G +
Sbjct: 240 AWTRALLGAKATELHLCGETRVVPLIRQLAALAGDKLVIHRYERLNPLKAMNKSLKGDLT 299
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
++Q GDCIV+FSR I+ LK IE + +I+YG LP E RT+QA+ FND ++++D L
Sbjct: 300 SLQKGDCIVSFSRVGIHALKADIERKTGRRAAIIYGGLPAEIRTQQASLFNDPNNDYDFL 359
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFP------- 348
VASDAIGMGLNL+ RIIF T+ K L+ LTVPE+KQI GRAGRY S
Sbjct: 360 VASDAIGMGLNLSCRRIIFETVVKTLPSGLKRLTVPEIKQIGGRAGRYRSAAQHGKDHQQ 419
Query: 349 ------VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHP-DSSLYGI 401
VG VT L+ DLP + ++L P + +AG+ P + ++ P ++SL +
Sbjct: 420 DNDNDNVGYVTSLEEVDLPYIQEALNTEPPPISAAGINPPDSVYEKFAAYFPSNASLAYM 479
Query: 402 LEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDI 454
++ E A+++ +F + L+ A +ID +P L ++ F +P++ +++
Sbjct: 480 VKRLTEIARINNLFFMCDPSPNLENAEIIDAVPGLHFVDQLTFMAAPMNPREEL 533
>gi|259482438|tpe|CBF76922.1| TPA: mitochondrial ATP-dependent RNA helicase Suv3, putative
(AFU_orthologue; AFUA_5G10820) [Aspergillus nidulans
FGSC A4]
Length = 832
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 180/414 (43%), Positives = 250/414 (60%), Gaps = 18/414 (4%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
DL P WYP AR R + LHVGPTNSGKT+ AL RLESS SG Y GPLRLLA EV
Sbjct: 167 IADLRYPAEWYPQARAIQRTIHLHVGPTNSGKTYHALKRLESSKSGFYAGPLRLLAQEVY 226
Query: 119 KRLNKANVSCDLITGQEREEVDGAKHRAV--TVEMADVVSDYDCAVIDEIQMLGCKTRGF 176
R + + L+TG E +G K V TVEM ++ Y+ VIDEIQM+ RG+
Sbjct: 227 HRFKSSGIPVSLVTGDEVRLSEGEKAVVVSNTVEMVNLGQTYEVGVIDEIQMIADPRRGW 286
Query: 177 SFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFS 235
++TRALLG A ELHLCG+ VPLI+Q+ + GD + + YERL+PL +N L G +
Sbjct: 287 AWTRALLGAKATELHLCGETRVVPLIRQLAALAGDKLVIHRYERLNPLKAMNKSLKGDLT 346
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
++Q GDCIV+FSR I+ LK IE + +I+YG LP E RT+QA+ FND ++++D L
Sbjct: 347 SLQKGDCIVSFSRVGIHALKADIERKTGRRAAIIYGGLPAEIRTQQASLFNDPNNDYDFL 406
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFP------- 348
VASDAIGMGLNL+ RIIF T+ K L+ LTVPE+KQI GRAGRY S
Sbjct: 407 VASDAIGMGLNLSCRRIIFETVVKTLPSGLKRLTVPEIKQIGGRAGRYRSAAQHGKDHQQ 466
Query: 349 ------VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHP-DSSLYGI 401
VG VT L+ DLP + ++L P + +AG+ P + ++ P ++SL +
Sbjct: 467 DNDNDNVGYVTSLEEVDLPYIQEALNTEPPPISAAGINPPDSVYEKFAAYFPSNASLAYM 526
Query: 402 LEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDI 454
++ E A+++ +F + L+ A +ID +P L ++ F +P++ +++
Sbjct: 527 VKRLTEIARINNLFFMCDPSPNLENAEIIDAVPGLHFVDQLTFMAAPMNPREEL 580
>gi|325094231|gb|EGC47541.1| ATP-dependent RNA helicase SUV3 [Ajellomyces capsulatus H88]
Length = 732
Score = 318 bits (816), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 186/431 (43%), Positives = 257/431 (59%), Gaps = 30/431 (6%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
DL P WYP AR R + LHVGPTNSGKT++AL RLE++ +G Y GPLRLLA E+
Sbjct: 157 LADLRNPTEWYPAARSLHRTIHLHVGPTNSGKTYRALKRLETAKTGFYAGPLRLLAHEIY 216
Query: 119 KRLNKANVSCDLITGQE----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
RLN + C L+TG E +++V G + TVEM + D + VIDEIQM+ R
Sbjct: 217 TRLNAKGIPCGLVTGDEVRISQDQVPGIF--SNTVEMVPLGQDVEVGVIDEIQMIADPHR 274
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GS 233
G+++TRALLG A+ELHLCG+ VPLI+ + + GD +++ YERL+PL +N L G+
Sbjct: 275 GWAWTRALLGARAHELHLCGEERVVPLIRDLAGLMGDKLEIHHYERLNPLKAMNRSLKGN 334
Query: 234 FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293
SN+Q GDC+V FSR I+ LK+ IE +IVYGSLP E R++QA FND ++++D
Sbjct: 335 LSNLQKGDCVVAFSRIGIHGLKQDIEKATGRRAAIVYGSLPAEIRSQQADLFNDPNNDYD 394
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS-------- 345
LVASDAIGMGLNL+ RIIF ++ + L L+V +VKQI GRAGRY S
Sbjct: 395 FLVASDAIGMGLNLSCKRIIFESVVRKLPTGLTRLSVSQVKQIGGRAGRYRSATDSRNVK 454
Query: 346 -----------KFPVGEVTCLDSEDLPLLHKSL-LEPSPMLESAGLFPNFDLIYMYSRLH 393
+ VG VT L+ DLP + K+L EP P+L SAGL P +I +S
Sbjct: 455 GFGVAGSAKNAETNVGFVTSLEDVDLPYIRKALNTEPEPIL-SAGLLPPDYIIKGFSEHF 513
Query: 394 PDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMN 451
P ++ + + L N A++ ++F +C+ + A ID + L + +K +F +P M
Sbjct: 514 PANTPFAYILQRLHNIAQVDPSFFLNDCQSHAEAAEAIDSVKGLSMDDKLVFLSAPTHMR 573
Query: 452 DDISSQGLTQF 462
D S +F
Sbjct: 574 DPQMSTIFKEF 584
>gi|121713500|ref|XP_001274361.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Aspergillus clavatus NRRL 1]
gi|119402514|gb|EAW12935.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Aspergillus clavatus NRRL 1]
Length = 633
Score = 318 bits (815), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 185/422 (43%), Positives = 254/422 (60%), Gaps = 18/422 (4%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
DL P WYP AR R + LHVGPTNSGKT+ AL RL++S SG Y GPLRLLA EV
Sbjct: 65 IADLRYPAEWYPQARSSQRTIHLHVGPTNSGKTYHALKRLQASKSGFYAGPLRLLAQEVY 124
Query: 119 KRLNKANVSCDLITGQEREEVDGAKHRAV--TVEMADVVSDYDCAVIDEIQMLGCKTRGF 176
R + + C L+TG + + +G V TVEM ++ ++ VIDEIQML RG+
Sbjct: 125 HRFQASGIPCSLVTGDDVKIPEGQNPTIVSNTVEMVNLGQQFEVGVIDEIQMLADPKRGW 184
Query: 177 SFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFS 235
++TRA+LG A+ELHLCG+ VPLI+++ +TGD +++ YERL+ L ++ + G
Sbjct: 185 AWTRAVLGARASELHLCGETRVVPLIRELAALTGDKLEIHRYERLNSLKVMDQSIRGDLR 244
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
+Q GDCIV FSR I+ LK IE +IVYGSLP E RT+QA+ FND +++D L
Sbjct: 245 KLQKGDCIVVFSRVGIHALKADIEKVTGRRAAIVYGSLPAEIRTQQASLFNDPDNDYDFL 304
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY----------GS 345
VASDAIGMGLNL+I RIIF T+ K L L+VPE+KQIAGRAGRY G
Sbjct: 305 VASDAIGMGLNLSIKRIIFETLVKRVPGGLVRLSVPEIKQIAGRAGRYRSAAQQNKDTGD 364
Query: 346 KFP-VGEVTCLDSEDLPLLHKSL-LEPSPMLESAGLFPNFDLIYMYSRLHP-DSSLYGIL 402
P VG VT L+ DLP + ++L +EP P + +AG+FP + ++ P D I+
Sbjct: 365 DEPNVGWVTSLEEVDLPYIQQALDIEPPP-ITAAGIFPPDPVFQKFAAYFPRDVPFEYII 423
Query: 403 EHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQ 461
+ LE +++ +F + L+ A VID + L + ++ F SP+ D+ S +
Sbjct: 424 KRLLEVSRVHPLFFMCDPRSQLENAEVIDSVTGLPIEDQITFMASPMYTRDNSSRNVASA 483
Query: 462 FA 463
FA
Sbjct: 484 FA 485
>gi|378726355|gb|EHY52814.1| adenosinetriphosphatase [Exophiala dermatitidis NIH/UT8656]
Length = 765
Score = 318 bits (814), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 174/396 (43%), Positives = 238/396 (60%), Gaps = 22/396 (5%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DL P WY AR+ R V LH+GPTNSGKT+ AL RLE S SG Y GPLRLLA EV R
Sbjct: 191 DLRYPTEWYTPARQIQRDVHLHIGPTNSGKTYNALKRLEESGSGFYAGPLRLLAHEVFSR 250
Query: 121 LNKANVSCDLITGQE--REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSF 178
++CDL+TG + ++ + A TVEM DV + + AVIDE+QM+ + RG+++
Sbjct: 251 FKAKGMACDLVTGDDVRLDDNEDVTLSASTVEMVDVTTPVEVAVIDEVQMMASEDRGWAW 310
Query: 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLG-SFSNI 237
TRA LG A E+HLCG+ +PLI+++ TGD + V Y+RL+PL + LG + N+
Sbjct: 311 TRAFLGANAKEVHLCGEARVLPLIRELTASTGDSLHVHEYKRLNPLKVMAKSLGGNLKNL 370
Query: 238 QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 297
+ GDCIVTFS +++ +KK IE C+IVYGSLPPETR +QA FND +++D LVA
Sbjct: 371 RKGDCIVTFSVFSLHAMKKQIELDTGRRCAIVYGSLPPETRAQQAALFNDPDNDYDYLVA 430
Query: 298 SDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFP--------- 348
SDAIGMGLNL++ RIIF KF+G LTVP++KQI GRAGRY S
Sbjct: 431 SDAIGMGLNLSVKRIIFHGTLKFNGSYTEQLTVPQIKQIGGRAGRYRSSHQAMNNSSNKS 490
Query: 349 -------VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIY-MYSRLHPDSSLYG 400
VG VT L+ EDLP++ ++ P + AGL P D + M +RL
Sbjct: 491 DTATEANVGLVTTLNDEDLPIVRDAMNAEDPPIRYAGLLPPGDFLEDMATRLPKGIPFEY 550
Query: 401 ILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLR 436
IL+ +A + + + + ++A +I+ P+R
Sbjct: 551 ILQRLRRSASIHRRFKLCSIRDQSRIARIIE--PVR 584
>gi|171690328|ref|XP_001910089.1| hypothetical protein [Podospora anserina S mat+]
gi|170945112|emb|CAP71223.1| unnamed protein product [Podospora anserina S mat+]
Length = 815
Score = 318 bits (814), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 184/441 (41%), Positives = 254/441 (57%), Gaps = 31/441 (7%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
+ DL P+ WYP R R V LHVGPTNSGKT+ AL LE + +GIY GPLRLLA E+
Sbjct: 203 EIADLRFPYEWYPATRMLQRTVHLHVGPTNSGKTYNALKALEGAKTGIYAGPLRLLAHEI 262
Query: 118 AKRLNKANVSCDLITGQE---REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
R C L+TG+E E VD H + TVEM+ + D AV+DEIQM+ + R
Sbjct: 263 WSRFAAKGKPCALVTGEEVRIPEGVDRWFH-SCTVEMSPLNKPVDVAVVDEIQMIASEDR 321
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GS 233
G+++T+A+LG+ A ELHLCG+ V LIQ + GD V Y+RL+PL ++ L G
Sbjct: 322 GWAWTQAVLGLQAKELHLCGEDRVVELIQDLCARIGDRCIVHRYQRLNPLETMSKSLRGD 381
Query: 234 FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293
F N++ GD +V FSR A+++LK IE C+IVYGSLPPETR +QA FND ++E+D
Sbjct: 382 FRNLEKGDAVVAFSRVALHKLKAGIEQATGKRCAIVYGSLPPETRAQQAALFNDPNNEYD 441
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---------- 343
LVASDAIGMGLNL I R+IF + KFDG ++R LTVPE+KQI GRAGRY
Sbjct: 442 YLVASDAIGMGLNLEIKRVIFESSSKFDGNKVRSLTVPEIKQIGGRAGRYRTASAEIASA 501
Query: 344 -----GSKFPV--------GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI-YMY 389
G + V G VT D DL + + + + +E+AGLFP ++I +
Sbjct: 502 QEGAAGGEEAVEAKVESNTGWVTAFDFRDLQDIQNAFQKEAKPIETAGLFPPANIIERFH 561
Query: 390 SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVD 449
+ P + +L E A+LS + + + L++A I L + ++ +F PV
Sbjct: 562 TYFPPRTPTSFVLTRLRELARLSPRFHLCDFDTALEIADAIQPYNLSVADRCVFLNCPVS 621
Query: 450 --MNDDISSQGLTQFATNYSK 468
++ D S G + ++K
Sbjct: 622 FRVSRDGESNGQREALQAFAK 642
>gi|327355966|gb|EGE84823.1| mitochondrial ATP-dependent RNA helicase Suv3 [Ajellomyces
dermatitidis ATCC 18188]
Length = 761
Score = 317 bits (811), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 186/440 (42%), Positives = 258/440 (58%), Gaps = 30/440 (6%)
Query: 50 SGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGP 109
S S ++ DL P WYP AR R + LHVGPTNSGKT+ AL RLE + +G Y GP
Sbjct: 177 SSSLKEQRALADLRNPTEWYPAARSLHRTIHLHVGPTNSGKTYHALKRLEKAKTGFYAGP 236
Query: 110 LRLLAWEVAKRLNKANVSCDLITGQE----REEVDGAKHRAVTVEMADVVSDYDCAVIDE 165
LRLLA E+ RLN + C L+TG E ++++ G + TVEMA D + VIDE
Sbjct: 237 LRLLAHEIYTRLNAKGIPCGLVTGDEVRISQDQIPGIY--SNTVEMAPFGQDVEVGVIDE 294
Query: 166 IQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV 225
IQM+ RG+++TRALLG A+ELHLCG+ VPLI+ + + GD +++ YERL+PL
Sbjct: 295 IQMIADPHRGWAWTRALLGARAHELHLCGEERVVPLIRDLAGLMGDKLEIHHYERLNPLK 354
Query: 226 PLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATR 284
++ L G+ SN+Q GDC+V FSR I+ LK+ IE +IVYGSLP E R++QA
Sbjct: 355 AMSRSLKGNLSNLQKGDCVVAFSRIGIHGLKQEIEKATGRRAAIVYGSLPAEIRSQQADL 414
Query: 285 FNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
FND ++++D LVASDAIGMGLNL+ RIIF ++ + L LTV +VKQI GRAGRY
Sbjct: 415 FNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVVRRLPTGLTRLTVSQVKQIGGRAGRYR 474
Query: 345 S-------------------KFPVGEVTCLDSEDLPLLHKSL-LEPSPMLESAGLFPNFD 384
S + VG VT L+ DLP + K+L EP P+L +AGL P
Sbjct: 475 SAKDTANTNSSKIASSDKEAETNVGFVTSLEDVDLPYIRKALDTEPEPIL-AAGLLPPDH 533
Query: 385 LIYMYSRLHPDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYL 442
++ +S P + + + L N A++ ++F ++ + + A ID + L + EK +
Sbjct: 534 IVKRFSEHFPPGTPFAYILQRLHNIAQVDSSFFLSDGQGHAEAAEAIDSIKGLSMDEKLV 593
Query: 443 FCISPVDMNDDISSQGLTQF 462
F +P M D S +F
Sbjct: 594 FLSAPTHMRDPQMSNIFREF 613
>gi|340960248|gb|EGS21429.1| hypothetical protein CTHT_0032870 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 797
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 181/430 (42%), Positives = 246/430 (57%), Gaps = 19/430 (4%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
DL P+ WYP R R LHVGPTNSGKT+ AL LE++ +GIY GPLRLLA E
Sbjct: 204 LADLRFPYEWYPATRMMQRTFHLHVGPTNSGKTYNALKALENARTGIYAGPLRLLAHETW 263
Query: 119 KRLNKANVSCDLITGQE---REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
R N C LITG+E E D H + TVEM + + D AVIDEIQM+ RG
Sbjct: 264 TRFKAKNKPCALITGEELRIPENTDTWFH-SCTVEMTPLNTRVDVAVIDEIQMIANDERG 322
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-VPLNVPLGSF 234
+++T+A+LG+ A E+HLCG+ V LIQ I G+ V Y RL+ L V N GSF
Sbjct: 323 WAWTQAVLGVQAKEVHLCGEERVVDLIQNICARLGEKCIVHRYNRLNGLEVEKNSLKGSF 382
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N++ GD +V+FSR +++LK IE C+IVYGSLPPETR QA FND +E+D
Sbjct: 383 RNLRKGDAVVSFSRLTLHQLKAGIEHDTGRRCAIVYGSLPPETRASQAALFNDPDNEYDF 442
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKF------- 347
LVASDAIGMGLNL + R++F T+ KFDG LR L+VPE+KQI GRAGRY +
Sbjct: 443 LVASDAIGMGLNLEVRRVVFETVHKFDGTNLRQLSVPEIKQIGGRAGRYRTAAKANVSDE 502
Query: 348 ------PVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI-YMYSRLHPDSSLYG 400
P G VT LD EDL ++ K+ +++AGL P ++ ++ P +
Sbjct: 503 EANQPPPPGLVTALDDEDLRVIRKAFNTDVSPIKTAGLRPPPAVLERFHAYFPPKTPTTF 562
Query: 401 ILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLT 460
+L E +LS + + + L++A +I L + ++ +F P+++ D L
Sbjct: 563 VLARLREMGRLSGLFHMCDISDALQIAELIKPYDLSIPDRCVFLHVPINLRDSKQVDVLK 622
Query: 461 QFATNYSKKG 470
FA ++ G
Sbjct: 623 AFAKCVAEMG 632
>gi|159126705|gb|EDP51821.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Aspergillus fumigatus A1163]
Length = 765
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 188/450 (41%), Positives = 263/450 (58%), Gaps = 20/450 (4%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
DL P WYP AR R + LHVGPTNSGKT+ AL RL++S +G Y GPLRLLA EV
Sbjct: 166 ADLRYPAEWYPQARALQRTIHLHVGPTNSGKTYHALQRLQASKNGFYAGPLRLLAQEVYH 225
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAV--TVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
R + + C L+TG + + +G V TVEM ++ YD VIDEIQML RG++
Sbjct: 226 RFQASGIPCSLVTGDDVKIPEGQTPSIVSNTVEMVNLGQPYDVGVIDEIQMLADPKRGWA 285
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSN 236
+TRA+LG A ELHLCG+ AVPL++++ +TGD +++ Y+RL+PL ++ + G N
Sbjct: 286 WTRAVLGARAKELHLCGETRAVPLVRELAALTGDRLEIHRYKRLNPLKVMDQSIRGDLKN 345
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296
+Q GDC+V FSR I+ LK IE +IVYGSLP E RT+QA FND +++D LV
Sbjct: 346 LQKGDCLVAFSRVGIHALKADIEKVTGRRAAIVYGSLPAEIRTQQAKLFNDPDNDYDFLV 405
Query: 297 ASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY------------G 344
ASDAIGMGLNL+I RIIF T+ K L L+VPE+KQI GRAGRY
Sbjct: 406 ASDAIGMGLNLSIKRIIFETLVKRVPGGLVRLSVPEIKQIGGRAGRYRPAAQQDKKDNND 465
Query: 345 SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHP-DSSLYGILE 403
S +G VTCL+ DLP + +++ P L +AG+FP + +S P D +++
Sbjct: 466 SDSNIGLVTCLEEVDLPYIREAMETEPPPLTAAGIFPPDPVFQKFSAYFPRDVPFEYLIK 525
Query: 404 HFLENAKLSENYFFANCEEVLKVATVIDQ-LPLRLHEKYLFCISPVDMNDDISSQGLTQF 462
LE +++ +F + L+ A +ID + L + ++ F +P+ D S F
Sbjct: 526 RLLEVCEVNPLFFLCDPRGQLENAEIIDSVVGLPIEDQVTFMAAPMYTRDRKSRSVACAF 585
Query: 463 ATNYSKKGIVQLREIFTPGLGSLRVAEFPV 492
A ++ +L +I P L +L + E PV
Sbjct: 586 AECVAEHSGGRLLDI--PDL-NLEILEEPV 612
>gi|70997649|ref|XP_753564.1| mitochondrial ATP-dependent RNA helicase Suv3 [Aspergillus
fumigatus Af293]
gi|66851200|gb|EAL91526.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Aspergillus fumigatus Af293]
Length = 765
Score = 316 bits (810), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 188/450 (41%), Positives = 263/450 (58%), Gaps = 20/450 (4%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
DL P WYP AR R + LHVGPTNSGKT+ AL RL++S +G Y GPLRLLA EV
Sbjct: 166 ADLRYPAEWYPQARALQRTIHLHVGPTNSGKTYHALQRLQASKNGFYAGPLRLLAQEVYH 225
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAV--TVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
R + + C L+TG + + +G V TVEM ++ YD VIDEIQML RG++
Sbjct: 226 RFQASGIPCSLVTGDDVKIPEGQTPSIVSNTVEMVNLGQPYDVGVIDEIQMLADPKRGWA 285
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSN 236
+TRA+LG A ELHLCG+ AVPL++++ +TGD +++ Y+RL+PL ++ + G N
Sbjct: 286 WTRAVLGARAKELHLCGETRAVPLVRELAALTGDRLEIHRYKRLNPLKVMDQSIRGDLKN 345
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296
+Q GDC+V FSR I+ LK IE +IVYGSLP E RT+QA FND +++D LV
Sbjct: 346 LQKGDCLVAFSRVGIHALKADIEKVTGRRAAIVYGSLPAEIRTQQAKLFNDPDNDYDFLV 405
Query: 297 ASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY------------G 344
ASDAIGMGLNL+I RIIF T+ K L L+VPE+KQI GRAGRY
Sbjct: 406 ASDAIGMGLNLSIKRIIFETLVKRVPGGLVRLSVPEIKQIGGRAGRYRPAVQQDKKDNND 465
Query: 345 SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHP-DSSLYGILE 403
S +G VTCL+ DLP + +++ P L +AG+FP + +S P D +++
Sbjct: 466 SDSNIGLVTCLEEVDLPYIREAMETEPPPLTAAGIFPPDPVFQKFSAYFPRDVPFEYLIK 525
Query: 404 HFLENAKLSENYFFANCEEVLKVATVIDQ-LPLRLHEKYLFCISPVDMNDDISSQGLTQF 462
LE +++ +F + L+ A +ID + L + ++ F +P+ D S F
Sbjct: 526 RLLEVCEVNPLFFLCDPRGQLENAEIIDSVVGLPIEDQVTFMAAPMYTRDRKSRSVACAF 585
Query: 463 ATNYSKKGIVQLREIFTPGLGSLRVAEFPV 492
A ++ +L +I P L +L + E PV
Sbjct: 586 AECVAEHSGGRLLDI--PDL-NLEILEEPV 612
>gi|332029211|gb|EGI69194.1| ATP-dependent RNA helicase SUV3-like protein, mitochondrial
[Acromyrmex echinatior]
Length = 672
Score = 316 bits (809), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 168/376 (44%), Positives = 248/376 (65%), Gaps = 17/376 (4%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P TWYPLAR K RK+I H GPTNSGKT+ AL R ++ SG+YC PL+LL EV
Sbjct: 172 SDLRSPATWYPLARSKNRKIIFHAGPTNSGKTYHALERFITAKSGVYCAPLKLLVAEVFY 231
Query: 120 RLNKANVSCDLITGQEREEVDG----AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N+ SCDL+TG+ER+ V G A H + +VEMA++ ++Y+ AVIDEIQ++ RG
Sbjct: 232 KCNERGTSCDLLTGEERKHVKGYNNPASHLSCSVEMANLQNNYEVAVIDEIQLMRDLNRG 291
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLGI A+E+HLCG+ AA+ L++ I TG++V+V+ Y+RL+ L N + + +
Sbjct: 292 WAWTRALLGIPADEIHLCGEDAAIELVKAICVSTGENVEVRRYKRLTQLKVENRAVETLN 351
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
NI GDCIV F+++ IY + +++ES+ K + +++YGSLPP T+ QA +FND ++ +L
Sbjct: 352 NIMPGDCIVCFNKNDIYNVSRSLESKRKEV-AVIYGSLPPGTKLAQAAKFNDPNNSCKIL 410
Query: 296 VASDAIGMGLNLNISRIIF-----STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA++AIGMGLNL+I RIIF T + E+ ++V QIAGRAGRYG+ + G
Sbjct: 411 VATNAIGMGLNLHIRRIIFYSLIQPTSNEKGEKEMDVISVSAALQIAGRAGRYGTAWETG 470
Query: 351 EVTCLDSEDLPLLHKSLLEPSP-MLESAGLFPNFDLIYMYSRLHPDSSLYGIL--EHFLE 407
VT EDL L K+LL +P + AGL P D I +Y+ P+SSL ++ + +
Sbjct: 471 YVTTFKREDLLTL-KNLLSQTPETITQAGLHPTADQIELYAYHLPNSSLSNLMFARQYSK 529
Query: 408 NAKLSENYFFANCEEV 423
N ++ N+ C+ +
Sbjct: 530 NDAITFNWL---CQHI 542
>gi|428673345|gb|EKX74258.1| ATP-dependent RNA and DNA helicase, putative [Babesia equi]
Length = 691
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 179/435 (41%), Positives = 260/435 (59%), Gaps = 21/435 (4%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
D+ P + + R VILHVGP NSGKTH A RLE SS+GIYC PLRLLAWE+
Sbjct: 156 LADIRHPELEFSGEKLSCRHVILHVGPPNSGKTHDAYRRLECSSTGIYCSPLRLLAWEIQ 215
Query: 119 KRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSF 178
+LNK+NVSC L+TGQER D H + TVEMA + + YDCA++DE+QM+G RG+++
Sbjct: 216 NKLNKSNVSCALLTGQERVINDTETHLSCTVEMAPLNNIYDCAIVDEMQMIGDPVRGYAW 275
Query: 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQ 238
TRA LG+ A E+H+CG+ + +PL ++++ ++GD ++++ + RLS LV L+ L ++
Sbjct: 276 TRAFLGLKAKEVHVCGNESCLPLARKLVDISGDTLEIKRHARLSNLVILDKEL-LIEELK 334
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHL-------CSIVYGSLPPETRTRQATRFNDASSE 291
GDC+V FSR ++ L+ IES + SIVYGSLPPE R Q +FN+ ++
Sbjct: 335 PGDCVVCFSRFDVFSLRNKIESTKYNWDTMDHSKTSIVYGSLPPEVRCDQIQKFNERKAK 394
Query: 292 FDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGE 351
+L++SDAIGMG+N+ I RIIF ++KK+DG E R L + EV+QIAGRAGRY GE
Sbjct: 395 --ILISSDAIGMGVNVRIRRIIFHSLKKYDGNEKRTLNISEVQQIAGRAGRYSMSCGHGE 452
Query: 352 VTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPD-------SSLYGILEH 404
V CL D LL K ++ P P ++ A + P+ +I +S + S +L
Sbjct: 453 VGCLQERDTMLLKKLMVSPQPPIDKAIIAPSTSVISAFSTSVTNVAGNTNFSDSIKLLFS 512
Query: 405 FLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFAT 464
++ ++ E FA + +V I +LP+ +Y+F M + L FA
Sbjct: 513 MVKTGEIFEVCDFAPLNRIARVLRAI-ELPISTLVEYIFVPLGTGM---LPILVLRTFAI 568
Query: 465 NYSKKGIVQLREIFT 479
++S V+L IFT
Sbjct: 569 SHSILNSVKLNNIFT 583
>gi|443717288|gb|ELU08439.1| hypothetical protein CAPTEDRAFT_184427 [Capitella teleta]
Length = 774
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 174/420 (41%), Positives = 248/420 (59%), Gaps = 11/420 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL+ P WYP AR R++I H GPTNSGKT+QAL + + SG+YCGPLRLLA E+
Sbjct: 228 ISDLSSPVHWYPAARAVKRRIIYHSGPTNSGKTYQALQKFFRAESGVYCGPLRLLANEIF 287
Query: 119 KRLNKANVSCDLITGQEREEVDG----AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
R N+ CDL+TG+ER VD A H + TVEM + + Y+ AVIDEIQML + R
Sbjct: 288 HRSNREGTPCDLVTGEERICVDPDGNPACHVSCTVEMTSLDTPYEVAVIDEIQMLRDENR 347
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLGI A E+H+CG+ A I++I + GD ++ +YERL+PL ++ PLG
Sbjct: 348 GWAWTRALLGINAEEVHVCGEGTAEEFIREIAESVGDTFEMNTYERLTPLEVMDEPLGDL 407
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
+Q GD +V F++ IY++ + +E+ G +++YGSLP T+ QA FN+ + V
Sbjct: 408 KYVQPGDAVVCFTKADIYKVSQKLETIGIE-SAVIYGSLPSGTKVSQANNFNNPNHPAKV 466
Query: 295 LVASDAIGMGLNLNISRIIFSTMKK--FDG---VELRDLTVPEVKQIAGRAGRYGSKFPV 349
LVA+DAIGMGLNL+I RI+F ++ K DG + E QIAGRAGR+G
Sbjct: 467 LVATDAIGMGLNLSIQRIVFYSLNKPSVDGEGNFTKSSIKPHEALQIAGRAGRFGKTKKT 526
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
G VT L EDLP L K + +E GL P + I +++ P S+L +++ F+
Sbjct: 527 GLVTTLFGEDLPKLKKLMATSIQKIEKVGLQPAVNQIELFAYHLPQSTLSNLIDIFMTLC 586
Query: 410 KLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
L + YF + +A VI+ +PL L +Y FC SP+ + A +SK
Sbjct: 587 SLDHSRYFMCRMDSFKTLADVIEGVPLDLTVRYTFCCSPISTTKPFVIAAMLMMARRFSK 646
>gi|290996790|ref|XP_002680965.1| ATP dependent RNA helicase [Naegleria gruberi]
gi|284094587|gb|EFC48221.1| ATP dependent RNA helicase [Naegleria gruberi]
Length = 1040
Score = 315 bits (808), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 188/470 (40%), Positives = 264/470 (56%), Gaps = 85/470 (18%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D+T P +Y + RK+I H+GPTNSGKTH AL+RL S +G+YCGPLRLLA EV +
Sbjct: 361 DMTNPFNYYKKSIPFGRKIIYHMGPTNSGKTHAALTRLSQSENGVYCGPLRLLAQEVFTK 420
Query: 121 LN-KANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
+N + C+L+TGQER + GA H A T+EMAD+ YD AV+DEIQM+ RG ++T
Sbjct: 421 MNTQYGCKCNLMTGQERRIIPGANHVACTIEMADLNEVYDVAVVDEIQMISDNQRGAAWT 480
Query: 180 RALLGICANELHLCGDPAAVPLIQ------------------------------------ 203
RALLG+ A E+H+CGD +A+ +++
Sbjct: 481 RALLGLQAREIHICGDGSALTIVKNLIFGGDNKLDAEIEVVESENPNYDPTSESDNVDSN 540
Query: 204 -------------QILQVT----GDDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVT 245
++LQ T D + V Y R+ PL + L GS NI+ DCIVT
Sbjct: 541 QNLYHYHQPVAANKLLQYTKSGIADSIDVIPYTRMKPLEISSESLQGSVQNIKDFDCIVT 600
Query: 246 FSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSE----------FDVL 295
FSR+ IY +KK IE C ++YG+LPPE RT QA FND+ ++ F VL
Sbjct: 601 FSRNEIYEIKKMIEINTGIRCCVIYGALPPEVRTEQAELFNDSGNQDPEENGGQRDFTVL 660
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFD----GVELRDLTVPEVKQIAGRAGRYGSKFPVGE 351
VASDA+GMGLNLNI R++F M K+D GV D+++ VKQIAGRAGR G +G+
Sbjct: 661 VASDAVGMGLNLNIKRVVFYRMTKYDYSKGGVAPLDVSL--VKQIAGRAGRRGFH-EIGQ 717
Query: 352 VTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLH--------PDS---SLYG 400
VT DL LH+ + P+ + AGLFP +D + +S+++ P+ SLY
Sbjct: 718 VTTFYENDLQYLHQCMNIPNEEITKAGLFPEWDQVESFSKVYKAKELANNPEGSGISLYE 777
Query: 401 ILEHFLENAKLSENYFFANCEEVLKVATVIDQL--PLRLHEKYLFCISPV 448
+LE F +++ +++FF + ++VL +AT ID L L +K+ F +PV
Sbjct: 778 VLEKFFALSRIHKDFFFCDVQQVLDLATSIDDAGPKLTLKQKFDFVNAPV 827
>gi|346318514|gb|EGX88117.1| ATP-dependent RNA helicase SUV3 [Cordyceps militaris CM01]
Length = 761
Score = 315 bits (807), Expect = 3e-83, Method: Compositional matrix adjust.
Identities = 178/456 (39%), Positives = 263/456 (57%), Gaps = 21/456 (4%)
Query: 43 VIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSS 102
V + + G + D +L PH W+P R R + +HVGPTNSGKT+ AL LE+S+
Sbjct: 179 VTQQRFSRGVEASQADLLNLRYPHEWFPATRAMQRTIHVHVGPTNSGKTYTALKALEAST 238
Query: 103 SGIYCGPLRLLAWEVAKRLNKANVSCDLITGQE-REEVDGAKH-RAVTVEMADVVSDYDC 160
G+Y GPLRLLA EV RL N+ C LITG+E R D ++ + TVEM + +D
Sbjct: 239 CGVYAGPLRLLAAEVYHRLRAKNLPCALITGEEVRIPEDTDRYFSSCTVEMMPLNKRFDV 298
Query: 161 AVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 220
AVIDEIQM+G RG ++T A LG+ A ++H+CG+ V LI+ + GD V YER
Sbjct: 299 AVIDEIQMIGNADRGSAWTTAFLGVQAKDVHVCGEERTVALIESLCATIGDKCVVHRYER 358
Query: 221 LSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRT 279
LSPL ++ L G + ++ GD IV FSR +++ LK+ +E C+I+YG+LPPE R
Sbjct: 359 LSPLKTMSTALEGRYHQLEKGDAIVAFSRVSLHALKRQVEQETGRRCAIIYGTLPPEVRV 418
Query: 280 RQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGR 339
+QA FND +++D +VASDAIGMGLNL I R+IF ++ KFDG + R L+VPE KQI GR
Sbjct: 419 QQAALFNDPDNDYDFVVASDAIGMGLNLEIKRVIFESVYKFDGFQHRMLSVPEFKQIGGR 478
Query: 340 AGRYGS--------------KFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 385
AGRY S + VG VT +D +D+ L K+ + ++ A + P +
Sbjct: 479 AGRYRSAQQAQDDATPADNAEQKVGYVTAMDRQDVRALTKAFQQDVEDIKHAYIQPPPSV 538
Query: 386 IYMY-SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFC 444
+ + S PD+ L +L A +S ++ L++A +I LPL ++++ C
Sbjct: 539 VERFASYFPPDTPLSFLLMRIKAAATVSPHFRLNISSSALEIADIIQDLPLSIYDRLSIC 598
Query: 445 ISPVDMNDDISSQGLTQFA--TNYSKKG-IVQLREI 477
P+ ++ + S L A +++ G ++ +REI
Sbjct: 599 HMPISLSSEGSVAALKAMARVVAHNESGDLLSIREI 634
>gi|397629726|gb|EJK69477.1| hypothetical protein THAOC_09261, partial [Thalassiosira oceanica]
Length = 617
Score = 315 bits (807), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 170/381 (44%), Positives = 231/381 (60%), Gaps = 14/381 (3%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
TDLTRP WYP AR R+++ H GPTNSGKT+ AL RL+ + G+Y PLRLLA E
Sbjct: 161 TDLTRPWEWYPRARLDRRRIVFHAGPTNSGKTYNALERLKRAGRGVYLAPLRLLAAECYT 220
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
LN+ V C L+TGQE+ V A H + TVE+AD+ DYD VIDEIQM+ + RG++++
Sbjct: 221 ELNRDGVYCSLLTGQEQRTVPFATHTSSTVELADLDEDYDVVVIDEIQMIQDEFRGYAWS 280
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-------G 232
RAL+G+ E+H+CG P AV L+++I + DD +V+ YER + L + L G
Sbjct: 281 RALMGMRCKEIHVCGGPEAVDLVKKIAKNCNDDFEVRRYERFTKLAVEDSSLAASPSAKG 340
Query: 233 SFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEF 292
++SN++ GDC+V F++ I+ +K+ IE H C ++YGSLPPE RT QA FND S++
Sbjct: 341 AYSNVKKGDCVVAFAKKDIFAIKREIERDTSHKCCVIYGSLPPEIRTEQARLFNDQDSDY 400
Query: 293 DVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV 352
D+LVASDAIGMGLNL I RII +++ K +G + L KQIAGRAGR S FP G V
Sbjct: 401 DILVASDAIGMGLNLAIRRIILNSIYKNNGETIVKLDHSSCKQIAGRAGRRNSPFPNGVV 460
Query: 353 TCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRL------HPDSSLYGILEHFL 406
T DL L + L AGL P+ I ++S + L+ +LE
Sbjct: 461 TTRCPSDLKYLRTCMETDIEPLARAGLVPSPPHIALFSEQLTAYSGKSNMELHQVLEEKP 520
Query: 407 -ENAKLSENYFFANCEEVLKV 426
+ L++ FAN EVL V
Sbjct: 521 GDRIALAQELPFANRAEVLTV 541
>gi|301614881|ref|XP_002936914.1| PREDICTED: ATP-dependent RNA helicase SUPV3L1, mitochondrial-like
[Xenopus (Silurana) tropicalis]
Length = 798
Score = 315 bits (806), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 166/419 (39%), Positives = 254/419 (60%), Gaps = 40/419 (9%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DL P WYP AR RK+I+H GPTNSGKT+ A+ R S+ SG+YCGPL+LLA E+
Sbjct: 233 ISDLRLPPNWYPEARAIQRKIIIHAGPTNSGKTYHAIQRYLSAKSGVYCGPLKLLAHEIY 292
Query: 119 KRLNKANVSCDLITGQEREEVDG----AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N + V CDLITG+E VD + H A T+EM V S Y+ AVIDEIQM+ +R
Sbjct: 293 QKSNDSGVPCDLITGEELVFVDPEGRPSAHAACTIEMCSVTSPYEVAVIDEIQMIRDPSR 352
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLG+CA E+H+CG+ AA+ L+ +++ TG++V+V++YERL+PL L+ L S
Sbjct: 353 GWAWTRALLGLCAEEIHICGEGAAINLVTELMFTTGEEVEVRNYERLTPLKILDQALESL 412
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N++ GDCIV F+++ IY + + IE+R C+++YGSLPP
Sbjct: 413 DNLRPGDCIVCFNKNDIYSVSRQIEARSLE-CAVIYGSLPP------------------- 452
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPV 349
++I RIIF+++ K E+ ++ + QIAGRAGR+ S F
Sbjct: 453 -----------GVSIKRIIFNSLVKPSINEKGEKEIDTISTSQALQIAGRAGRFSSMFKD 501
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
GEVT + +DLPLL + + +P +E+AGL P D I M++ PD++L +++ F+ +
Sbjct: 502 GEVTTMFRDDLPLLKEIMRKPVTAIETAGLHPTADQIEMFAYHLPDATLSNLIDIFVSLS 561
Query: 410 KLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
++ YF N ++ VA +I +PL L +Y+FC +P++ L +FA +S+
Sbjct: 562 QVDGLYFVCNIDDFKFVADMIQHIPLNLRARYVFCTAPINRKQPFVCTSLLKFARQFSR 620
>gi|342872115|gb|EGU74512.1| hypothetical protein FOXB_14957 [Fusarium oxysporum Fo5176]
Length = 763
Score = 313 bits (803), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 181/442 (40%), Positives = 253/442 (57%), Gaps = 26/442 (5%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D P+ W+P R R + +HVGPTNSGKT++AL LE+S G+Y GPLRLLA EV +R
Sbjct: 196 DFRFPYEWFPATRAMQRTIHVHVGPTNSGKTYRALKALENSKRGVYAGPLRLLANEVYQR 255
Query: 121 LNKANVSCDLITGQE---REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
L + C L+TG+E E+ D + TVEM +D AVIDEIQML RG +
Sbjct: 256 LTAKGLPCALLTGEEVRLPEDTD-TYFTSCTVEMVPFNDRFDVAVIDEIQMLADPDRGNA 314
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSN 236
+T ALLG+ A E+HLCG+ V LIQ I GD V Y+RLSPL P+N L G +S
Sbjct: 315 WTTALLGVQAKEVHLCGEERTVSLIQSICAGIGDKCIVHRYDRLSPLEPMNDALDGDYSR 374
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296
++ GD IV FSR ++ LK+ IE + C+I+YGSLPPE R +QA FND +++D +V
Sbjct: 375 LEKGDAIVAFSRLNLHALKRTIEKKTGRRCAIIYGSLPPEVRVQQAALFNDPDNDYDFIV 434
Query: 297 ASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS----------- 345
ASDAIGMGLNL I R+I + KFDG R LT PE+KQI GRAGRY +
Sbjct: 435 ASDAIGMGLNLEIRRVILEAVAKFDGSHNRMLTYPELKQIGGRAGRYRTVRNAAEAGTNA 494
Query: 346 ------KFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSS-L 398
+ VG VT +D++DL +H++ +E+A + P I +S P + L
Sbjct: 495 DVAVEEETKVGYVTTMDTQDLRSVHRAFGAKVDDIEAAYISPPAAAIERFSTYFPKGTPL 554
Query: 399 YGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISS-- 456
IL E A +S+ Y + L++A I +PL ++++ LF P++ +
Sbjct: 555 SFILMRIRELASVSKQYRIHISPDKLEIADHIQDIPLTIYDRLLFTNLPINARAQNAVPV 614
Query: 457 -QGLTQFATNYSKKGIVQLREI 477
+ L + N G+++++EI
Sbjct: 615 LRALARIVANSEDGGLLKIKEI 636
>gi|425772670|gb|EKV11066.1| Mitochondrial ATP-dependent RNA helicase Suv3, putative
[Penicillium digitatum Pd1]
Length = 779
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 176/408 (43%), Positives = 247/408 (60%), Gaps = 17/408 (4%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
+ DL P WYP AR R + LHVGPTNSGKT+ AL RL S +G Y GPLRLLA EV
Sbjct: 170 EVADLRWPAEWYPRARSMQRTIHLHVGPTNSGKTYHALQRLAKSKNGFYAGPLRLLAQEV 229
Query: 118 AKRLNKANVSCDLITGQEREEVDGAKHRAVT---VEMADVVSDYDCAVIDEIQMLGCKTR 174
R V C L+TG + + D + +T VEM + +YD VIDEIQM+ +R
Sbjct: 230 YHRFKADGVPCSLVTGDDVKFPDDDQVPRITSNTVEMVSLGQEYDVGVIDEIQMIANSSR 289
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GS 233
G+++TRA LG ELHLCG+ AVPLI+++ +TGD+++V YERL+ L + L G+
Sbjct: 290 GWAWTRAFLGAQVAELHLCGETRAVPLIRELCALTGDNLEVHRYERLNALEVMPHSLKGN 349
Query: 234 FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293
++++ GDCIV FSR I+ +K IE +IVYG LP E RT+QA FND +++D
Sbjct: 350 LNSLEKGDCIVVFSRKGIHAMKADIEKTTGRRAAIVYGGLPAEIRTQQANLFNDPDNDYD 409
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---------G 344
LVASDAIGMGLNL+ R+IF T+ K L+ LTVPE+KQI GRAGRY
Sbjct: 410 FLVASDAIGMGLNLSCKRVIFDTLVKRVPTGLQRLTVPEIKQIGGRAGRYRPANATESTN 469
Query: 345 SKFPVGEVTCLDSEDLPLLHKSL-LEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYG-IL 402
+ VG ++CL+ DLP + +++ LEP P L +AG+FP + ++ P + ++
Sbjct: 470 EEPNVGLISCLEEVDLPYIQQAMKLEPPP-LSAAGIFPPESVFRKFAAYFPPGVPFEYLI 528
Query: 403 EHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVD 449
+ LE AK++ +F + L+ A +ID + L ++ F +SP+D
Sbjct: 529 KRVLEIAKVNPLFFLCDPSSQLENAEIIDTVKGLPFEDQLKFMVSPMD 576
>gi|169611102|ref|XP_001798969.1| hypothetical protein SNOG_08660 [Phaeosphaeria nodorum SN15]
gi|160702221|gb|EAT83828.2| hypothetical protein SNOG_08660 [Phaeosphaeria nodorum SN15]
Length = 1055
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 184/435 (42%), Positives = 249/435 (57%), Gaps = 41/435 (9%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
+ DL P WYP R+ R V +HVGPTNSGKT+ AL RLE +SSGIY GPLRLLA EV
Sbjct: 173 EVADLRHPAEWYPSTRQVQRTVHMHVGPTNSGKTYHALKRLEQASSGIYLGPLRLLAHEV 232
Query: 118 AKRLNKANVSCDLITGQERE--EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
RLN SC LITG+E+ E D + TVEMA + S +D AVIDEIQM+ K RG
Sbjct: 233 YTRLNAKGKSCALITGEEQRIPEGDAPLMYSCTVEMAPLNSRFDVAVIDEIQMISHKERG 292
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-VPLNVPLGSF 234
+++T+A LG+ A E+HLCG+ VPL++++ + GD V V YERL+PL V G
Sbjct: 293 WAWTQAFLGLPAKEIHLCGEARTVPLMRELCALVGDKVHVHEYERLTPLQVEPRSMGGKL 352
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N+Q GDCIV F+ I+ L+K IE R C+IVYGSLPPETR +QA FND +++D
Sbjct: 353 DNLQKGDCIVAFTVVGIHALRKDIERRTGKKCAIVYGSLPPETRAQQARLFNDPDNDYDF 412
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS--------- 345
LVASDAIGMGLNL I R+IF + K +GV L + E+KQIAGRAGRY +
Sbjct: 413 LVASDAIGMGLNLAIRRVIFESTVKSNGVNYVPLEISEIKQIAGRAGRYKTAHQAVNVDT 472
Query: 346 ---------------------KFP----VGEVTCLDSEDLPLLHKSL-LEPSPMLESAGL 379
K P +G VT LD D L + EP P + +AGL
Sbjct: 473 QKSIADAAVDPAIGLDDKPQPKEPETKTIGWVTTLDEVDHAHLKAGMRREPDP-ITTAGL 531
Query: 380 FPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRL 437
FP ++ ++ P + + I+ E +++ + ++ L +A I + L +
Sbjct: 532 FPPSLIVERFANYFPPGTPFSYIMLRLHEISEIHPRFHLCGLKDQLAIADTIHLVKNLSI 591
Query: 438 HEKYLFCISPVDMND 452
++ C +P++M +
Sbjct: 592 QDRIQICAAPINMRN 606
>gi|425773436|gb|EKV11789.1| Mitochondrial ATP-dependent RNA helicase Suv3, putative
[Penicillium digitatum PHI26]
Length = 779
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 176/408 (43%), Positives = 247/408 (60%), Gaps = 17/408 (4%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
+ DL P WYP AR R + LHVGPTNSGKT+ AL RL S +G Y GPLRLLA EV
Sbjct: 170 EVADLRWPAEWYPRARSMQRTIHLHVGPTNSGKTYHALQRLAKSKNGFYAGPLRLLAQEV 229
Query: 118 AKRLNKANVSCDLITGQEREEVDGAKHRAVT---VEMADVVSDYDCAVIDEIQMLGCKTR 174
R V C L+TG + + D + +T VEM + +YD VIDEIQM+ +R
Sbjct: 230 YHRFKADGVPCSLVTGDDVKFPDDDQVPRITSNTVEMVSLGQEYDVGVIDEIQMIANSSR 289
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GS 233
G+++TRA LG ELHLCG+ AVPLI+++ +TGD+++V YERL+ L + L G+
Sbjct: 290 GWAWTRAFLGAQVAELHLCGETRAVPLIRELCALTGDNLEVHRYERLNALEVMPHSLKGN 349
Query: 234 FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293
++++ GDCIV FSR I+ +K IE +IVYG LP E RT+QA FND +++D
Sbjct: 350 LNSLEKGDCIVVFSRKGIHAMKADIEKTTGRRAAIVYGGLPAEIRTQQANLFNDPDNDYD 409
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---------G 344
LVASDAIGMGLNL+ R+IF T+ K L+ LTVPE+KQI GRAGRY
Sbjct: 410 FLVASDAIGMGLNLSCKRVIFDTLVKRVPTGLQRLTVPEIKQIGGRAGRYRPANATESTN 469
Query: 345 SKFPVGEVTCLDSEDLPLLHKSL-LEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYG-IL 402
+ VG ++CL+ DLP + +++ LEP P L +AG+FP + ++ P + ++
Sbjct: 470 EEPNVGLISCLEEVDLPYIQQAMKLEPPP-LSAAGIFPPESVFRKFAAYFPPGVPFEYLI 528
Query: 403 EHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVD 449
+ LE AK++ +F + L+ A +ID + L ++ F +SP+D
Sbjct: 529 KRVLEIAKVNPLFFLCDPSSQLENAEIIDTVKGLPFEDQLKFMVSPMD 576
>gi|358374212|dbj|GAA90806.1| mitochondrial ATP-dependent RNA helicase Suv3 [Aspergillus kawachii
IFO 4308]
Length = 640
Score = 313 bits (801), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 182/406 (44%), Positives = 242/406 (59%), Gaps = 17/406 (4%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
DL RP WYP AR R + LHVGPTNSGKT+ AL RLE+S G Y GPLRLLA EV
Sbjct: 64 ADLRRPAEWYPQARALQRTIHLHVGPTNSGKTYHALKRLEASKRGFYAGPLRLLAQEVFH 123
Query: 120 RLNKANVSCDLITGQE-REEVDGAKHRAV--TVEMADVVSDYDCAVIDEIQMLGCKTRGF 176
R SC LITG + + DG R V TVEM + Y+ V+DEIQM+ RG+
Sbjct: 124 RFQANGTSCSLITGDDVKIPEDGKPSRIVSNTVEMVSLGDQYEVGVVDEIQMIADPHRGW 183
Query: 177 SFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFS 235
++TRA+LG A ELHLCG+ AVPLI+++ +TGD +++ YERL+PL N L G
Sbjct: 184 AWTRAVLGARATELHLCGEVRAVPLIKELAALTGDKLEIHRYERLNPLKVQNRSLKGDLK 243
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N+Q GDC+V+FSR I+ LK IE +IVYGSLP E RT+QA+ FND +++D L
Sbjct: 244 NLQKGDCLVSFSRVGIHALKADIEKNTGKRAAIVYGSLPAEIRTQQASLFNDPDNDYDFL 303
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFP------- 348
VASDAIGMGLNL+ RIIF T+ K L+ L+VPE+KQI GRAGRY S
Sbjct: 304 VASDAIGMGLNLSCKRIIFETLIKRVPGGLQRLSVPEIKQIGGRAGRYRSAAQQQADSSE 363
Query: 349 ----VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS-SLYGILE 403
VG VT L+ DLP + +++ P L SAG+ P + + P + L +++
Sbjct: 364 EDTNVGYVTSLEDIDLPYIREAMDSEPPPLVSAGILPPDSVYQKVAAYFPSNVPLEYLIK 423
Query: 404 HFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPV 448
+ +++ +F + L+ A VID + LR ++ F SP+
Sbjct: 424 RLMVVSQVHPLFFLCDPRNQLENAEVIDTVDGLRTADQLTFMASPM 469
>gi|320590452|gb|EFX02895.1| mitochondrial ATP-dependent RNA helicase [Grosmannia clavigera
kw1407]
Length = 780
Score = 312 bits (800), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 184/479 (38%), Positives = 265/479 (55%), Gaps = 47/479 (9%)
Query: 6 LRNR--KASALGIPRILRDNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLT 63
LRN + A G+ R LR + F+L S++ +V+ + G+ F +
Sbjct: 159 LRNAFVRRDAAGLQRELRYGFQSFALRSQQP----KAVETL------QEGLADFRY---- 204
Query: 64 RPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK 123
P+ W+P R R + LHVGPTNSGKT+QAL LE + +GIY GPLRLLA E+ R+
Sbjct: 205 -PYEWFPATRSMQRTIHLHVGPTNSGKTYQALQALERARTGIYAGPLRLLAHEIYTRMTA 263
Query: 124 ANVSCDLITGQERE--EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRA 181
+C LITG+E+ E + ++ TVEM + D AVIDEIQM+ + RG+++T+A
Sbjct: 264 KGRACALITGEEQRIPEDGDSFFQSCTVEMTPLNKRVDVAVIDEIQMMADEDRGWAWTQA 323
Query: 182 LLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSNIQTG 240
LLG+ A E+HLCG+ AV L++ + GD V YERLS L ++ L G F N++ G
Sbjct: 324 LLGVQAREVHLCGEDRAVDLVRALCARMGDKCVVHRYERLSALQTMSKSLRGDFGNLRKG 383
Query: 241 DCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 300
D +V+FSR ++ LK IE C+IVYGSLPPETR +QA FND +++D LVASDA
Sbjct: 384 DAVVSFSRVGLHTLKSGIEKMTGRRCAIVYGSLPPETRAQQAALFNDPDNDYDFLVASDA 443
Query: 301 IGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV----------- 349
IGMGLNL I R+IF T K DG+ R LTV E++QI GRAGR+ +
Sbjct: 444 IGMGLNLEIKRVIFETATKHDGMSFRHLTVSEIRQIGGRAGRFRTASQAVKTAAAVASTP 503
Query: 350 ---------------GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHP 394
G V L+ EDL ++ + + L+ AG+ P I ++R P
Sbjct: 504 ATTPATTLAKRWGTPGYVATLEDEDLSVVQGAFTTNAEPLQWAGIQPPTFAIERFARYFP 563
Query: 395 DSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMND 452
+ + IL+ E +++S + E L VA +I PL ++++ +F +P + D
Sbjct: 564 PETPFSFILQRVRELSRISGRFRLCTPNESLDVADIIQPFPLSIYDRCVFITAPCALRD 622
>gi|344233399|gb|EGV65271.1| P-loop containing nucleoside triphosphate hydrolase protein
[Candida tenuis ATCC 10573]
Length = 535
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 165/405 (40%), Positives = 249/405 (61%), Gaps = 18/405 (4%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D + P WYP RK RK+++HVGPTNSGKT+Q+L +LE SSG Y GPLRLLA E+ +
Sbjct: 26 DFSNPAQWYPETRKMKRKIVMHVGPTNSGKTYQSLKKLEKCSSGYYAGPLRLLAREIYEN 85
Query: 121 LNKANVSCDLITGQE---REEVDG--AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
N ++C+L+TG+E R + DG ++ + T+EM + D +IDEIQML RG
Sbjct: 86 FNGRGINCNLVTGEEVVARVDDDGKISQITSGTIEMVPLFKKMDLCIIDEIQMLADDMRG 145
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
++T ALLG+ A E+H+CG+ +V L+++I +TGD++++ YERL L + P+
Sbjct: 146 EAWTSALLGVQAKEVHVCGEERSVDLVRRIATLTGDEIEINRYERLGKLEVASQPVRGLE 205
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
++ GDC++ FS+ I +LK AIE K +++YG+LPPE R+ QA FN S +FDVL
Sbjct: 206 RLKPGDCVIAFSKRKILQLKVAIEKSTKLKVAVIYGALPPEIRSEQAHGFN--SGKFDVL 263
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG--SKFPVGEVT 353
VASDA+GMGLNL I RI+FST +KF+G + LT V+QI GRAGR+ G +T
Sbjct: 264 VASDAVGMGLNLAIKRIVFSTTQKFNGTSVASLTQSAVRQIGGRAGRFSHDKSKSGGVIT 323
Query: 354 CLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY-SRLHPDSSLYGILEHFLENAKLS 412
++ +DL + K + P + A ++P ++ Y S+ HP++S+ IL+ S
Sbjct: 324 AMNKKDLAYIKKHMDGPVEDIPKACVWPTNEVWTSYISKFHPNTSMESILKDIDNGPINS 383
Query: 413 ENYFFANCE------EVLKVATVIDQLPLRLHEKYLFCISPVDMN 451
+N+F N E E+L ++ QL + ++ I+PV++N
Sbjct: 384 DNFFLTNIESRMGIMELLSADGIMQQLS--IEDQLKLSIAPVNLN 426
>gi|350639476|gb|EHA27830.1| hypothetical protein ASPNIDRAFT_185630 [Aspergillus niger ATCC
1015]
Length = 636
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 182/408 (44%), Positives = 242/408 (59%), Gaps = 19/408 (4%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
DL RP WYP AR R + LHVGPTNSGKT+ AL RLE+S G Y GPLRLLA EV
Sbjct: 58 ADLRRPAEWYPQARALQRTIHLHVGPTNSGKTYHALKRLEASKRGFYAGPLRLLAQEVFH 117
Query: 120 RLNKANVSCDLITGQE-REEVDGAKHRAV--TVEMADVVSDYDCAVIDEIQMLGCKTRGF 176
R SC LITG + + DG R V TVEM + Y+ V+DEIQM+ RG+
Sbjct: 118 RFQANGTSCSLITGDDVKIPEDGKPSRIVSNTVEMVSLGDQYEVGVVDEIQMIADPHRGW 177
Query: 177 SFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFS 235
++TRA+LG A ELHLCG+ AVPLI+++ +TGD +++ YERL+PL N L G
Sbjct: 178 AWTRAVLGARATELHLCGEVRAVPLIKELAALTGDKLEIHRYERLNPLKVQNRSLKGDLK 237
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N+Q GDC+V+FSR I+ LK IE +IVYGSLP E RT+QA+ FND +++D L
Sbjct: 238 NLQKGDCLVSFSRVGIHALKADIEKTTGKRAAIVYGSLPAEIRTQQASLFNDPDNDYDFL 297
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFP------- 348
VASDAIGMGLNL+ RIIF T+ K L+ L+VPE+KQI GRAGRY S
Sbjct: 298 VASDAIGMGLNLSCKRIIFETLIKRVPGGLQRLSVPEIKQIGGRAGRYRSAAQQQENGSS 357
Query: 349 ------VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS-SLYGI 401
VG VT L+ DLP + +++ P L SAG+ P + + P + L +
Sbjct: 358 SEDDTNVGYVTSLEDIDLPYIREAMESEPPPLVSAGILPPDSVYQKVAAYFPSNVPLEYL 417
Query: 402 LEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPV 448
++ + +++ +F + L+ A VID + LR ++ F SP+
Sbjct: 418 IKRLMVVSQVHPLFFLCDPRNQLENAEVIDTVDGLRTADQLTFMASPM 465
>gi|242777745|ref|XP_002479096.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Talaromyces stipitatus ATCC 10500]
gi|218722715|gb|EED22133.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Talaromyces stipitatus ATCC 10500]
Length = 746
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 182/451 (40%), Positives = 253/451 (56%), Gaps = 25/451 (5%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
TDL P WYP R K R + LHVGPTNSGKT++AL RLE + G Y GPLRLLA EV
Sbjct: 166 TDLRYPAEWYPFTRSKQRTIHLHVGPTNSGKTYRALKRLEQAKLGFYAGPLRLLAQEVYT 225
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAV--TVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
R + V C L+TG E + A R + TVEM + DYD VIDEIQM+ RG++
Sbjct: 226 RFSTQGVPCSLVTGDE-VRISDATPRIISNTVEMVSIYKDYDVGVIDEIQMIADPDRGWA 284
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSN 236
+TRA LG A ELH+CG+ AVPLI+++ + GD++++ Y+RL+PL L G
Sbjct: 285 WTRAFLGARAKELHVCGEERAVPLIKELTTLMGDNLEIHRYQRLNPLQAEEKSLNGDLRK 344
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296
++ GDCIVTFSR I+ LK IE +IVYG LP E RT+QA FND + +D LV
Sbjct: 345 LRKGDCIVTFSRINIHALKNEIEKSTGKRAAIVYGGLPAEIRTQQANLFNDPHNNYDFLV 404
Query: 297 ASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY----------GSK 346
ASDAIGMGLNL RIIF T+ K L +++PE+KQI GRAGRY +
Sbjct: 405 ASDAIGMGLNLKCKRIIFQTLVKGGKNGLSRISIPEIKQIGGRAGRYRAANETDPRDSEE 464
Query: 347 FPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIY-MYSRLHPDSSLYGILEHF 405
VG VT L+ DLP + ++L P L +AG+ P + Y + S PD S ++
Sbjct: 465 ENVGLVTSLEDVDLPFIKQALEFDPPPLTAAGVIPTDAMFYRVASYFPPDVSFKFLVNRV 524
Query: 406 LENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDD---ISSQGLTQ 461
+++ +F L+ A ++D+ + + ++ +F SP+ D S++G Q
Sbjct: 525 CSVSRVHPLFFMCKARSQLEAAEILDRCDRMSIEDQLVFMASPLGKRDPALLASAKGFIQ 584
Query: 462 FATNYSKKGIVQLREIFTPGLGSLRVAEFPV 492
+ ++ + E+ +L + E PV
Sbjct: 585 CVARNTSGRLLDIPEL------NLEILEAPV 609
>gi|213406782|ref|XP_002174162.1| ATP-dependent RNA helicase suv3 [Schizosaccharomyces japonicus
yFS275]
gi|212002209|gb|EEB07869.1| ATP-dependent RNA helicase suv3 [Schizosaccharomyces japonicus
yFS275]
Length = 663
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 162/351 (46%), Positives = 228/351 (64%), Gaps = 10/351 (2%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D+ PH YP AR RK I+HVGPTNSGKTH A+++L++ GI+ GPLRLLA E+ R
Sbjct: 173 DVEWPHDLYPPARSMRRKFIMHVGPTNSGKTHNAINKLKTCKKGIFAGPLRLLASEIYIR 232
Query: 121 LNKANVSCDLITGQE-REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
+N + C+L+TG+E + + + + A TVEMAD+ YD AVIDEIQ++ + RG+++T
Sbjct: 233 MNAEGIKCNLVTGEEVKADYENPQLLACTVEMADLHQQYDVAVIDEIQLISDENRGWAWT 292
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSNIQ 238
+ +LG+ A E+HLCG+ +AV LI+++ + T D+V+V YERL+ L L G N++
Sbjct: 293 QCVLGLRAKEIHLCGEESAVELIKKLAEKTLDEVEVHRYERLNALRVSKTSLNGDLGNVK 352
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
GDC+V FSR AI+ K +E C +VYGSLP E R +QAT FND +VL+AS
Sbjct: 353 DGDCVVAFSRRAIFEAKNTLEEFHNKKCCVVYGSLPLEIRKQQATDFNDPKIPANVLLAS 412
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS------KFPVGEV 352
DA+GMGLNL+I R++F+++ KF G D+ VP +KQIAGRAGRY + K GEV
Sbjct: 413 DAVGMGLNLSIQRVVFTSLAKFTGSSFEDIPVPLIKQIAGRAGRYKASNNQDEKQSAGEV 472
Query: 353 TCLDSEDLPLLHKSLLEPSPMLESAG-LFPNFDLIYMYSRLHPDSSLYGIL 402
TCL +P+L ++L +P ML+ AG +FP+ D+ Y P Y L
Sbjct: 473 TCLYDYQMPILKRALSQPIRMLKQAGFMFPD-DIWCEYFLTCPQDIPYSFL 522
>gi|134081681|emb|CAK46615.1| unnamed protein product [Aspergillus niger]
Length = 642
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 182/408 (44%), Positives = 242/408 (59%), Gaps = 19/408 (4%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
DL RP WYP AR R + LHVGPTNSGKT+ AL RLE+S G Y GPLRLLA EV
Sbjct: 64 ADLRRPAEWYPQARALQRTIHLHVGPTNSGKTYHALKRLEASKRGFYAGPLRLLAQEVFH 123
Query: 120 RLNKANVSCDLITGQE-REEVDGAKHRAV--TVEMADVVSDYDCAVIDEIQMLGCKTRGF 176
R SC LITG + + DG R V TVEM + Y+ V+DEIQM+ RG+
Sbjct: 124 RFQANGTSCSLITGDDVKIPEDGKPSRIVSNTVEMVSLGDQYEVGVVDEIQMIADPHRGW 183
Query: 177 SFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFS 235
++TRA+LG A ELHLCG+ AVPLI+++ +TGD +++ YERL+PL N L G
Sbjct: 184 AWTRAVLGARATELHLCGEVRAVPLIKELAALTGDKLEIHRYERLNPLKVQNRSLKGDLK 243
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N+Q GDC+V+FSR I+ LK IE +IVYGSLP E RT+QA+ FND +++D L
Sbjct: 244 NLQKGDCLVSFSRVGIHALKADIEKTTGKRAAIVYGSLPAEIRTQQASLFNDPDNDYDFL 303
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFP------- 348
VASDAIGMGLNL+ RIIF T+ K L+ L+VPE+KQI GRAGRY S
Sbjct: 304 VASDAIGMGLNLSCKRIIFETLIKRVPGGLQRLSVPEIKQIGGRAGRYRSAAQQQENGSS 363
Query: 349 ------VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS-SLYGI 401
VG VT L+ DLP + +++ P L SAG+ P + + P + L +
Sbjct: 364 SEDDTNVGYVTSLEDIDLPYIREAMESEPPPLVSAGILPPDSVYQKVAAYFPSNVPLEYL 423
Query: 402 LEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPV 448
++ + +++ +F + L+ A VID + LR ++ F SP+
Sbjct: 424 IKRLMVVSQVHPLFFLCDPRNQLENAEVIDTVDGLRTADQLTFMASPM 471
>gi|317035069|ref|XP_001401003.2| ATP-dependent RNA helicase SUV3 [Aspergillus niger CBS 513.88]
Length = 755
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 182/407 (44%), Positives = 242/407 (59%), Gaps = 19/407 (4%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DL RP WYP AR R + LHVGPTNSGKT+ AL RLE+S G Y GPLRLLA EV R
Sbjct: 178 DLRRPAEWYPQARALQRTIHLHVGPTNSGKTYHALKRLEASKRGFYAGPLRLLAQEVFHR 237
Query: 121 LNKANVSCDLITGQE-REEVDGAKHRAV--TVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
SC LITG + + DG R V TVEM + Y+ V+DEIQM+ RG++
Sbjct: 238 FQANGTSCSLITGDDVKIPEDGKPSRIVSNTVEMVSLGDQYEVGVVDEIQMIADPHRGWA 297
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSN 236
+TRA+LG A ELHLCG+ AVPLI+++ +TGD +++ YERL+PL N L G N
Sbjct: 298 WTRAVLGARATELHLCGEVRAVPLIKELAALTGDKLEIHRYERLNPLKVQNRSLKGDLKN 357
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296
+Q GDC+V+FSR I+ LK IE +IVYGSLP E RT+QA+ FND +++D LV
Sbjct: 358 LQKGDCLVSFSRVGIHALKADIEKTTGKRAAIVYGSLPAEIRTQQASLFNDPDNDYDFLV 417
Query: 297 ASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFP-------- 348
ASDAIGMGLNL+ RIIF T+ K L+ L+VPE+KQI GRAGRY S
Sbjct: 418 ASDAIGMGLNLSCKRIIFETLIKRVPGGLQRLSVPEIKQIGGRAGRYRSAAQQQENGSSS 477
Query: 349 -----VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS-SLYGIL 402
VG VT L+ DLP + +++ P L SAG+ P + + P + L ++
Sbjct: 478 EDDTNVGYVTSLEDIDLPYIREAMESEPPPLVSAGILPPDSVYQKVAAYFPSNVPLEYLI 537
Query: 403 EHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPV 448
+ + +++ +F + L+ A VID + LR ++ F SP+
Sbjct: 538 KRLMVVSQVHPLFFLCDPRNQLENAEVIDTVDGLRTADQLTFMASPM 584
>gi|393220740|gb|EJD06226.1| P-loop containing nucleoside triphosphate hydrolase protein
[Fomitiporia mediterranea MF3/22]
Length = 643
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 181/461 (39%), Positives = 256/461 (55%), Gaps = 32/461 (6%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D T P WYP AR RK+ +HVGPTNSGKTH AL L +S G+Y PLRLLA+E+ R
Sbjct: 30 DHTHPEEWYPTARMLRRKIHMHVGPTNSGKTHNALRALAASRRGVYASPLRLLAYEIFDR 89
Query: 121 LNKANVS----------------CDLITGQE-REEVDGAKHRAVTVEMADVVSDYDCAVI 163
LN + C+L+TG+E R + A + TVEM D Y+ AV+
Sbjct: 90 LNNGRIVPLGADPSAPPETFKRLCNLVTGEEVRMISEDANLLSCTVEMIDTSKRYEVAVV 149
Query: 164 DEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSP 223
DEIQML RG ++T A+LG+ A E+HLCG+ AVPL+Q++L+ GD++ V YERL+P
Sbjct: 150 DEIQMLSDPERGGAWTAAVLGLHAEEIHLCGEAGAVPLVQEMLKDVGDELIVHRYERLTP 209
Query: 224 LVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQA 282
L + L G + IQ GDC+V+FSR ++ LK+ IE C+I+YG LPPE R+ QA
Sbjct: 210 LTVASKSLKGDLTKIQKGDCVVSFSRSMLFSLKEQIEEATGMRCAIIYGRLPPEVRSEQA 269
Query: 283 TRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGR 342
RFND S +DVLV SDAIGMGLNL I RI+F + +K+DG R L++ ++KQIAGRAGR
Sbjct: 270 ERFNDPDSGYDVLVGSDAIGMGLNLKIKRIVFESSQKWDGTNQRALSLSQLKQIAGRAGR 329
Query: 343 YG----SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIY------MYSRL 392
+G P G VT + DLP + K++ S + + P ++ + +
Sbjct: 330 FGMHGTDTDPGGVVTTIHERDLPTVRKAVESRSVPVSKRAILPTTQNMFHSLEQLVRPQK 389
Query: 393 HPDSSLYGILEHFLENAKLSENYFFANCEEVLK-VATVIDQL--PLRLHEKYLFCISPVD 449
+ + + A+L+ Y + ++ + V VID L E+ ++PV
Sbjct: 390 QKQTKFSAVFDILRSTARLAPCYALRDLGKMAEDVVPVIDTYCKDFTLEERLRVFLAPVI 449
Query: 450 MNDDISSQGLTQFATNYSKKGIVQLREIFTPGLGSLRVAEF 490
D +F +Y K+ V+L E G+G L +F
Sbjct: 450 WRDGAVKMAAKRFINSYRKEMHVKLFECLR-GVGLLEARDF 489
>gi|119479159|ref|XP_001259608.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Neosartorya fischeri NRRL 181]
gi|119407762|gb|EAW17711.1| mitochondrial ATP-dependent RNA helicase Suv3, putative
[Neosartorya fischeri NRRL 181]
Length = 776
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 187/469 (39%), Positives = 265/469 (56%), Gaps = 26/469 (5%)
Query: 44 IIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSS 103
I Y + ++ DL P WYP AR R + LHVGPTNSGKT+ AL RL++S S
Sbjct: 161 ITEKYSAPRLEQQKKIADLRYPAEWYPQARALQRTIHLHVGPTNSGKTYHALQRLQASKS 220
Query: 104 GIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAV--TVEMADVVSDYDCA 161
G Y GPLRLLA EV R + + C L+TG + + +G V TVEM ++ YD
Sbjct: 221 GFYAGPLRLLAQEVYHRFQASGIPCSLVTGDDVKIPEGQTPTIVSNTVEMVNLGQPYDVG 280
Query: 162 VIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERL 221
VIDEIQML RG+++TRA+LG A ELHLCG+ VPL++++ +TGD +++ Y+RL
Sbjct: 281 VIDEIQMLADPKRGWAWTRAVLGARAKELHLCGETRVVPLVRELAALTGDRLEIHRYKRL 340
Query: 222 SPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 280
+PL ++ + G N+Q GDC+V FSR I+ LK IE +IVYGSLP E RT+
Sbjct: 341 NPLKVMDQSIRGDLKNLQKGDCLVAFSRVGIHALKADIEKVTGRRAAIVYGSLPAEIRTQ 400
Query: 281 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 340
QA FND +++D LVASDAIGMGLNL+I RIIF T+ K L L+VPE+KQI GRA
Sbjct: 401 QAKLFNDPDNDYDFLVASDAIGMGLNLSIKRIIFETLVKRVPGGLVRLSVPEIKQIGGRA 460
Query: 341 GRY------------GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYM 388
GRY + +G VT L+ DLP + +++ P L +AG+FP +
Sbjct: 461 GRYRPAAQQDKKDNNDADSNIGLVTALEEVDLPYIREAMDTEPPPLTAAGIFPPDPVFQK 520
Query: 389 YSRLHP-DSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQ-LPLRLHEKYLFCIS 446
+S P D +++ LE +++ +F + L A VID + L + ++ F +
Sbjct: 521 FSAYFPRDVPFEYLIKRLLEVCEVNPLFFLCDPRGQLDNAEVIDSVVGLPIEDQVTFMAA 580
Query: 447 PVDMNDDISSQGLTQFA---TNYSKKGIVQLREIFTPGLGSLRVAEFPV 492
P+ D S FA +S G++ + ++ +L + E PV
Sbjct: 581 PMYTRDRKSRSVACAFAECVAEHSGGGLLDIPDL------NLEILEEPV 623
>gi|156049155|ref|XP_001590544.1| hypothetical protein SS1G_08284 [Sclerotinia sclerotiorum 1980]
gi|154692683|gb|EDN92421.1| hypothetical protein SS1G_08284 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 805
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 176/445 (39%), Positives = 253/445 (56%), Gaps = 40/445 (8%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
D P W+P R R LHVGPTNSGKT+ AL +LE+++SGIY GPLRLLA EV
Sbjct: 194 LADFRYPIEWFPATRAMQRTFHLHVGPTNSGKTYHALQKLEAANSGIYAGPLRLLAHEVY 253
Query: 119 KRLNKANVSCDLITGQEREEVDGAKH--RAVTVEMADVVSDYDCAVIDEIQMLGCKTRGF 176
RLN C LITG+ER D K ++ TVEM + + D AVIDEIQM+G + RG+
Sbjct: 254 TRLNAKGKPCSLITGEERRIPDCGKDLMKSCTVEMVPLNTKVDIAVIDEIQMIGDEERGW 313
Query: 177 SFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL----- 231
++T+A+LG+ A E+HLCG+ LI+++ + GD + + +Y+RL L +N L
Sbjct: 314 AWTQAVLGVQAKEVHLCGEVRTTDLIKKLCAMMGDKLVIHNYDRLGKLQVMNNCLSTKNN 373
Query: 232 ----------GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGK-HLCSIVYGSLPPETRTR 280
G S ++ GD I+ FSR I+ +K IE++ K C+IVYGSLPPETR
Sbjct: 374 ERDGPSEKGGGPVSKLEKGDAIILFSRMKIHAMKNKIEAQHKGKRCAIVYGSLPPETRAL 433
Query: 281 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 340
QA FND +++D LVAS+AIGMGLNL+I R+I ++K+FDG +L L + E+KQIAGRA
Sbjct: 434 QAALFNDPDNDYDFLVASNAIGMGLNLSIKRVILESIKRFDGTDLITLPLSEIKQIAGRA 493
Query: 341 GRYG---------------------SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGL 379
GRY ++ PVG VT ED +L ++ + + + SAG+
Sbjct: 494 GRYKTARDAIEAGPIDVTDGIPAKPTEPPVGLVTTFYKEDHKILSNAMSKEAAQMTSAGI 553
Query: 380 FPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLH 438
FP D+I ++ P S+ + I+ E +S + +E + +A +I L +
Sbjct: 554 FPPADVIERFAERFPKSTPFSYIILRLHEIGSISSQFHLCKLKEHVDIADIIQDFSLSIR 613
Query: 439 EKYLFCISPVDMNDDISSQGLTQFA 463
+ +F +PV + D + L FA
Sbjct: 614 NRLVFLAAPVSVRDSGGVEVLRAFA 638
>gi|46132986|ref|XP_389198.1| hypothetical protein FG09022.1 [Gibberella zeae PH-1]
Length = 752
Score = 311 bits (798), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 179/456 (39%), Positives = 258/456 (56%), Gaps = 21/456 (4%)
Query: 43 VIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSS 102
+I + + G D P+ W+P R RK+ +HVGPTNSGKT++AL LE+S
Sbjct: 169 IIRQKFSKGLEESHKRLLDFRFPYEWFPATRAMQRKIHVHVGPTNSGKTYRALKALEASK 228
Query: 103 SGIYCGPLRLLAWEVAKRLNKANVSCDLITGQE-REEVDGAKH-RAVTVEMADVVSDYDC 160
G+Y GPLRLLA EV +RL + C L+TG+E R D + + TVEM V +D
Sbjct: 229 RGVYAGPLRLLANEVYQRLTAKGLPCALLTGEEVRVPSDTDTYFTSCTVEMVPVNEQFDV 288
Query: 161 AVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 220
AVIDEIQM+ + RG + ALLG+ A E+HLCG+ V LI+ I GD+ V YER
Sbjct: 289 AVIDEIQMIADEDRGQGWATALLGVQAKEVHLCGEERTVKLIESICASIGDECIVHRYER 348
Query: 221 LSPLVPL-NVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRT 279
LSPL P+ N +G + ++ GD +V FSR ++ LK IE + C+I+YGSLPPE R
Sbjct: 349 LSPLEPMDNALMGDYGKLEKGDAVVAFSRMNLHALKLTIEKKTGRRCAIIYGSLPPEVRV 408
Query: 280 RQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGR 339
+QA FND +++D +VASDAIGMGLNL I R++ T K+DG R L+ PE+KQI GR
Sbjct: 409 QQAALFNDPDNDYDFIVASDAIGMGLNLEIRRVVLETCAKYDGSHNRLLSYPELKQIGGR 468
Query: 340 AGRYGSK--------------FPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 385
AGRY + VG VT +D +DL ++HK+ P +E A + P +
Sbjct: 469 AGRYKTARNATEGTESEVTEIRKVGYVTTMDRQDLKVVHKAFEADVPDIEYAYVTPPASV 528
Query: 386 IYMYSRLHPDSS-LYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFC 444
+ +S P + L IL E A +S+ + E L++A +I +PL ++++ F
Sbjct: 529 VERFSTYFPSQTPLSFILMRIKELASVSKLFRLHISTEKLEIADMIQDIPLTIYDRLTFT 588
Query: 445 ISPVDMNDDISSQGLTQFATNYSKKG---IVQLREI 477
P+ + + L A+ +K G ++ ++EI
Sbjct: 589 NLPIAARAENAVPVLRALASVVAKNGSGDLLSIKEI 624
>gi|403417869|emb|CCM04569.1| predicted protein [Fibroporia radiculosa]
Length = 673
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 186/467 (39%), Positives = 263/467 (56%), Gaps = 45/467 (9%)
Query: 57 FDFTDLTRPHTWYPLARK-KVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAW 115
F DL+RP + YP+AR K RKVI+HVGPTNSGKTH AL L + SG+Y GPLRLLA
Sbjct: 78 FRAADLSRPASAYPVARAAKPRKVIMHVGPTNSGKTHNALRALAGAQSGVYAGPLRLLAH 137
Query: 116 EVAKRLNKANV------------------------------------SCDLITGQEREEV 139
E+ +RLNK + +C+L+TG+E++ V
Sbjct: 138 EIWERLNKGQIVPLGVEMDAHTEPDTRTNFDVGGPAIRKEASPQYARACNLLTGEEQKIV 197
Query: 140 -DGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAA 198
+ + TVEM V ++YD AV+DEIQML RG +++ A+LGI A ELHLCG+ A
Sbjct: 198 MESGALLSCTVEMVSVNAEYDVAVVDEIQMLADPDRGGAWSNAVLGISARELHLCGEETA 257
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSN-IQTGDCIVTFSRHAIYRLKKA 257
VPL++ +L+ TGD++ V Y RL+PL + L + N +Q GDC+V FSR I+ KK
Sbjct: 258 VPLVEAMLRDTGDELIVNRYRRLTPLQAADEGLKNDLNLVQKGDCVVCFSRTKIFTYKKR 317
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 317
IE C++ YG LPPE R+ QA FND S +D+LVASDA+GMGLNL I RIIF T+
Sbjct: 318 IEEATGMRCAVAYGRLPPEIRSEQAALFNDPDSGYDILVASDAVGMGLNLKIKRIIFDTV 377
Query: 318 KKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEP-SPM 373
+K+DG L L+ ++KQIAGRAGRY G G VT + DLP + ++L P P+
Sbjct: 378 RKYDGNRLVLLSTSQIKQIAGRAGRYGLHGKDEAGGIVTAMQDADLPDIRRALAAPMQPL 437
Query: 374 LESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQL 433
+ + + Y+ + L P SL ++ + AKL +Y + ++ ++ID +
Sbjct: 438 RYARVQLLSQSIRYVMNTLPPGVSLQIAVDVYHYVAKLHPSYEIPDTRDLENRISLIDPI 497
Query: 434 PLR--LHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIF 478
+E+ L ++PV D ++ L Y+ V LR+ F
Sbjct: 498 GKNNSFNERMLLHMAPVPQRDPLAQDVLRCIVRTYNSSMRVSLRKAF 544
>gi|19115541|ref|NP_594629.1| mitochondrial ATP-dependent RNA helicase Rpm2 [Schizosaccharomyces
pombe 972h-]
gi|74676199|sp|O94445.1|SUV3_SCHPO RecName: Full=ATP-dependent RNA helicase suv3, mitochondrial;
Flags: Precursor
gi|4056555|emb|CAA22590.1| mitochondrial ATP-dependent RNA helicase Rpm2 [Schizosaccharomyces
pombe]
Length = 647
Score = 311 bits (796), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 161/342 (47%), Positives = 224/342 (65%), Gaps = 5/342 (1%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
TDL P WYP ARK R +I+HVGPTNSGKTH+AL RL++ GI+ GPLRLLA E+
Sbjct: 154 LTDLKNPIEWYPGARKLRRHIIMHVGPTNSGKTHRALERLKTCKKGIFAGPLRLLAHEIY 213
Query: 119 KRLNKANVSCDLITGQE-REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
RL ++C+L TG+E R + + + TVEM ++ + +D AVIDEIQM+ +RG++
Sbjct: 214 NRLQANGIACNLYTGEEIRNDYPFPQVVSCTVEMCNLSTTFDVAVIDEIQMMADPSRGYA 273
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSN 236
+T+ LLG+ A E+HLCG+ + V L++ I ++T DD V YERL+PL L G S
Sbjct: 274 WTQCLLGLQAKEIHLCGEESVVKLVRSIAKMTQDDFTVYRYERLNPLHVAEKSLNGKLSE 333
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296
++ GDC+V FSR I+ LK I+ +++YGSLPPE R +QA+ FN SS+ ++L+
Sbjct: 334 LKDGDCVVAFSRKNIFTLKSKIDQALGKKSAVIYGSLPPEVRNQQASLFNSKSSDENILL 393
Query: 297 ASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVT 353
ASDAIGMGLNL + RI+FS +KKF GV D+ VP++KQIAGRAGR+ GSK G VT
Sbjct: 394 ASDAIGMGLNLGVKRIVFSDLKKFSGVSTIDIPVPQIKQIAGRAGRHNPNGSKQSAGIVT 453
Query: 354 CLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPD 395
L +D L++++ P+ L +A + DL + Y L D
Sbjct: 454 TLYQKDFAKLNRAMNLPTKNLFNACIGAKDDLFFRYLSLFSD 495
>gi|226293916|gb|EEH49336.1| ATP-dependent RNA helicase suv3 [Paracoccidioides brasiliensis
Pb18]
Length = 761
Score = 310 bits (795), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 184/426 (43%), Positives = 252/426 (59%), Gaps = 23/426 (5%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
DL WYP AR R + LHVGPTNSGKT+ AL RLE++ +G Y GPLRLLA EV
Sbjct: 186 LADLRNATEWYPAARSLYRTIHLHVGPTNSGKTYHALKRLEAAKTGFYAGPLRLLAHEVY 245
Query: 119 KRLNKANVSCDLITGQEREEVDGA--KHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGF 176
RLN ++C L+TG E + +G + TVEM + D D VIDEIQM+ RG+
Sbjct: 246 TRLNAKGITCGLVTGDEVKISEGQIPGIYSNTVEMVPLGQDVDVGVIDEIQMIADPFRGW 305
Query: 177 SFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFS 235
++TRALLG A+ELHLCG+ VPLI+ + + GD +++ YERL+PL +N L G+ +
Sbjct: 306 AWTRALLGARAHELHLCGEERVVPLIRDLAGLMGDRLEIHHYERLNPLKAMNKSLKGNLA 365
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N+Q GDC+V FSR I+ LK+ IE +IVYGSLP E R++QA FND ++++D L
Sbjct: 366 NLQKGDCVVAFSRVGIHGLKQDIEKATGRRAAIVYGSLPAEIRSQQADLFNDPNNDYDFL 425
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---------GSK 346
VASDAIGMGLNL+ RIIF ++ + L L+V ++KQI GRAGRY S
Sbjct: 426 VASDAIGMGLNLSCKRIIFESVVRRLPTGLTRLSVSQIKQIGGRAGRYRPASNVTETDSS 485
Query: 347 FP-------VGEVTCLDSEDLPLLHKSL-LEPSPMLESAGLFPNFDLIYMYSRLHPDSSL 398
P VG VT L+ DL + K+L EP P+L SAGL P +I + P ++
Sbjct: 486 IPGKDAETNVGFVTSLEDVDLSYIRKALSAEPEPIL-SAGLLPPDYVIKRFVEHFPANTP 544
Query: 399 YGILEHFLENAKLSE-NYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISS 456
+ + L N L + N+F A+ + ++A ID + L + +K +F +P M D S
Sbjct: 545 FSYVLQRLHNIALVDPNFFIADNQGRAQIAEAIDGIKGLGIDDKMVFLSAPAHMRDHQMS 604
Query: 457 QGLTQF 462
+F
Sbjct: 605 TIFREF 610
>gi|225684290|gb|EEH22574.1| ATP-dependent RNA helicase SUV3 [Paracoccidioides brasiliensis
Pb03]
Length = 764
Score = 310 bits (794), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 184/426 (43%), Positives = 252/426 (59%), Gaps = 23/426 (5%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
DL WYP AR R + LHVGPTNSGKT+ AL RLE++ +G Y GPLRLLA EV
Sbjct: 189 LADLRNATEWYPAARSLYRTIHLHVGPTNSGKTYHALKRLEAAKTGFYAGPLRLLAHEVY 248
Query: 119 KRLNKANVSCDLITGQEREEVDGA--KHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGF 176
RLN ++C L+TG E + +G + TVEM + D D VIDEIQM+ RG+
Sbjct: 249 TRLNAKGITCGLVTGDEVKISEGQIPGIYSNTVEMVPLGQDVDVGVIDEIQMIADPFRGW 308
Query: 177 SFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFS 235
++TRALLG A+ELHLCG+ VPLI+ + + GD +++ YERL+PL +N L G+ +
Sbjct: 309 AWTRALLGARAHELHLCGEERVVPLIRDLAGLMGDRLEIHHYERLNPLKAMNKSLKGNLA 368
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N+Q GDC+V FSR I+ LK+ IE +IVYGSLP E R++QA FND ++++D L
Sbjct: 369 NLQKGDCVVAFSRVGIHGLKQDIEKATGRRAAIVYGSLPAEIRSQQADLFNDPNNDYDFL 428
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---------GSK 346
VASDAIGMGLNL+ RIIF ++ + L L+V ++KQI GRAGRY S
Sbjct: 429 VASDAIGMGLNLSCKRIIFESVVRRLPTGLTRLSVSQIKQIGGRAGRYRPASNVTETDSS 488
Query: 347 FP-------VGEVTCLDSEDLPLLHKSL-LEPSPMLESAGLFPNFDLIYMYSRLHPDSSL 398
P VG VT L+ DL + K+L EP P+L SAGL P +I + P ++
Sbjct: 489 IPGKDAETNVGFVTSLEDVDLSYIRKALSAEPEPIL-SAGLLPPDYVIKRFVEHFPANTP 547
Query: 399 YGILEHFLENAKLSE-NYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISS 456
+ + L N L + N+F A+ + ++A ID + L + +K +F +P M D S
Sbjct: 548 FSYVLQRLHNIALVDPNFFIADNQGRAQIAEAIDGIKGLGIDDKMVFLSAPAHMRDHQMS 607
Query: 457 QGLTQF 462
+F
Sbjct: 608 TIFREF 613
>gi|406607580|emb|CCH41051.1| ATP-dependent RNA helicase [Wickerhamomyces ciferrii]
Length = 863
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 164/387 (42%), Positives = 248/387 (64%), Gaps = 16/387 (4%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D++ P WYP ARK RK+ILH+GPTNSGKT+ AL RL+ S+ G Y GPLRLLA E+ +
Sbjct: 215 DISNPEEWYPEARKIRRKLILHMGPTNSGKTYHALQRLKQSNDGYYAGPLRLLAREIYDK 274
Query: 121 LNKANVSCDLITGQE----REEVD-GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ C+L+TG+E R+E A + TVEM V ++ V+DEIQM+ K RG
Sbjct: 275 FKSEGIRCNLVTGEEVIEDRDESGIEASLSSGTVEMIPVNQRFEVVVLDEIQMIADKFRG 334
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSF 234
++++ ALLG A+E+HLCG+ + +PLI++I + TGD+V + YERL L + P+ G
Sbjct: 335 WAWSHALLGAQADEIHLCGEESVIPLIKRIAETTGDEVIINRYERLGELQIEDQPVTGGL 394
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
+ ++ GDCIV FS+ I K+ I+++ C ++YG+LP ETR +A RFN+ E+DV
Sbjct: 395 NGLEKGDCIVAFSKKRIMAYKEEIQNKTDLKCGVIYGALPAETRATEAERFNNG--EYDV 452
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY------GSKFP 348
LVASDAIGMGLNL+I+R+IF + KKFDG +LR L P+VKQI GRAGR+ G K
Sbjct: 453 LVASDAIGMGLNLSINRVIFDSHKKFDGDQLRALESPQVKQIGGRAGRFKAPGADGKKSK 512
Query: 349 -VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSS-LYGILEHFL 406
+G+++ + L + +S+ P+ LE A ++P+ + +Y+ P + L +LE F
Sbjct: 513 SLGKISAFYPDTLEFIRESMSTPTIFLERADVWPSDTIWSLYTSTFPKQTRLKIVLETFH 572
Query: 407 ENAKLSENYFFANCEEVLKVATVIDQL 433
+N + ++ Y + + L+VA ++++
Sbjct: 573 KNVEDTKLYRISTLRDRLEVAHALNEI 599
>gi|429857984|gb|ELA32820.1| ATP-dependent RNA helicase suv3 [Colletotrichum gloeosporioides
Nara gc5]
Length = 786
Score = 310 bits (793), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 175/432 (40%), Positives = 244/432 (56%), Gaps = 24/432 (5%)
Query: 44 IIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSS 103
++R + ++ D+ P W+P R R + LHVGPTNSGKT++AL LE++ S
Sbjct: 152 MMRQRLTKVTPRQKKLADMRFPMEWFPATRAMQRTIHLHVGPTNSGKTYRALKALENAKS 211
Query: 104 GIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE--EVDGAKHRAVTVEMADVVSDYDCA 161
GIY GPLRLLA E+ R C ++TG+E+ E + + TVEM + D A
Sbjct: 212 GIYGGPLRLLAHEIYMRFQNKGKPCAMVTGEEQRIPEDEDNYFISCTVEMTPLNRMVDVA 271
Query: 162 VIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERL 221
VIDEIQM+G RG+++T+ALLG+ A E+HLCG+ V LI+ I GD+ V Y+RL
Sbjct: 272 VIDEIQMIGDMDRGWAWTQALLGVMAKEVHLCGEERVVDLIKSICASIGDECIVHRYQRL 331
Query: 222 SPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 280
SPL + L S +Q GD +V F+R ++ LK AIE + C+IVYGSLPPETR +
Sbjct: 332 SPLETMKQSLDNDLSKLQKGDAVVAFTRVNLHGLKNAIEEQTGRRCAIVYGSLPPETRAQ 391
Query: 281 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 340
QA FND +++D LVASDAIGMGLNL I R+IF T K DG + R L E+KQI GRA
Sbjct: 392 QAALFNDPDNDYDFLVASDAIGMGLNLEIKRVIFETATKHDGTQFRVLNTSEIKQIGGRA 451
Query: 341 GRYGS--------------------KFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLF 380
GRY + + +G VT LD +DL + K+ + LE+A +
Sbjct: 452 GRYKTARQATTSDAGADTNAVAPVEEKKMGYVTTLDPDDLQTIRKAFQNEAEPLETAVIH 511
Query: 381 PNFDLIYMYSR-LHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHE 439
P +I +S PD+ L IL E A +SE Y E +++A I + P+ + E
Sbjct: 512 PPAFVIERFSEYFPPDTPLSFILLRLRELAPVSERYSVHVNERSIEIADTIQEFPMTVQE 571
Query: 440 KYLFCISPVDMN 451
+ +PV+ +
Sbjct: 572 RITILNAPVNKD 583
>gi|449295757|gb|EMC91778.1| hypothetical protein BAUCODRAFT_52931, partial [Baudoinia
compniacensis UAMH 10762]
Length = 575
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 179/461 (38%), Positives = 258/461 (55%), Gaps = 46/461 (9%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
DL P W+P R R V LHVGPTNSGKT+ AL RLE + G+Y GPLRLLA EV
Sbjct: 34 LADLRYPSEWFPATRTMHRTVHLHVGPTNSGKTYHALQRLEQAERGVYAGPLRLLAHEVY 93
Query: 119 KRLNKANVSCDLITGQEREEVD-----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKT 173
R+N C LITG+E+ + A A TVEM + + D AVIDEIQM+G
Sbjct: 94 TRMNAKGRPCSLITGEEKRSSELKVGGNALMSACTVEMMPLNATMDVAVIDEIQMIGNAE 153
Query: 174 RGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-G 232
RG+++T+ALLG+ A E+HLCG+ VPLI+++ GD +++ Y+RLSPL L G
Sbjct: 154 RGWAWTQALLGVKAKEVHLCGEERTVPLIRELCASVGDKLEIHRYQRLSPLEVAGESLNG 213
Query: 233 SFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEF 292
++ GDC+V+FS I+ L++ IE + + VYGSLPPETR +QA FN+ ++E+
Sbjct: 214 DLRKLRKGDCVVSFSVMGIHALRRQIEQQTGRKVATVYGSLPPETRAQQARLFNEPNNEY 273
Query: 293 DVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY--------- 343
D LVASDA+GMGLNL I RIIF + KFDG + R L V ++KQIAGRAGRY
Sbjct: 274 DFLVASDAVGMGLNLAIKRIIFESSSKFDGQQRRTLGVADIKQIAGRAGRYRTASFNAKA 333
Query: 344 ------------------------GSKFPVGEVTCLDSEDLPLLHKSLL-EPSPMLESAG 378
G++ VG VT ++ D P++ ++ EP P +++AG
Sbjct: 334 TEEKEDLAAKKGDPPFEKVENAASGNRDNVGLVTTIEPFDFPIVAAAMTAEPEP-IKTAG 392
Query: 379 LFPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LR 436
LFP ++ +S P + + IL E +++ + +E + +A +I+ + L
Sbjct: 393 LFPPSSVLERFSSYFPPGTPFSYILIRLHELSQMHNRFHLCGLKEQIFIADLIEPVKGLT 452
Query: 437 LHEKYLFCISPVDMNDDISSQGLTQFA---TNYSKKGIVQL 474
+ ++ + C +P + I + + FA N S IV +
Sbjct: 453 ISDRNIICNAPAGRREQIWQKLMPAFARCIANQSGGSIVDI 493
>gi|393241110|gb|EJD48633.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 611
Score = 309 bits (792), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 171/460 (37%), Positives = 269/460 (58%), Gaps = 28/460 (6%)
Query: 57 FDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWE 116
++ D+ P +P R+ RK+I+HVGPTNSGKT+ AL L +S G+Y GPLRLLA E
Sbjct: 24 YEAADMRYPAELFPEPRRIRRKIIMHVGPTNSGKTYNALRALAASKRGVYAGPLRLLAHE 83
Query: 117 VAKRLNKANV------------------SCDLITGQEREEV-DGAKHRAVTVEMADVVSD 157
V RLNK + +C++ITG+E+ V + A + TVEM ++
Sbjct: 84 VYTRLNKGVILPAGIERNPLDPDKLYPRACNMITGEEKRIVAEDAPLTSCTVEMLQWITH 143
Query: 158 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 217
YD AV+DEIQM+G + RG ++T A+LG+ A+ELHLCG+ +AVP+++ + + TGD++ V
Sbjct: 144 YDVAVVDEIQMIGDEQRGGAWTSAVLGLMADELHLCGEESAVPVVEALAKETGDELIVNH 203
Query: 218 YERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 276
YERLSPL + L G FS ++ GDC+V FSR I+ LK IE C++ YG LPPE
Sbjct: 204 YERLSPLHAASSSLEGDFSKLREGDCVVAFSRRLIFDLKHKIEQSTSFRCAVAYGMLPPE 263
Query: 277 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 336
R QA FND +E+ ++VASDAIGMGLNL I RIIF T +K+DG ++ L++ VKQI
Sbjct: 264 LRAEQAALFNDPDNEYGIMVASDAIGMGLNLKIKRIIFYTTQKWDGQQMIPLSLSTVKQI 323
Query: 337 AGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLH 393
AGRAGR+ + G T ++ EDLP++ ++ P+ L+ A + P + + +L
Sbjct: 324 AGRAGRFSLGAQQTSAGIATSMEPEDLPVIQLAMRIPTRPLKRAVIAPTPEQVQAILQLL 383
Query: 394 PDSSLYGILEHFLE-NAKLSENYFFANCEEVLKVATVIDQL---PLRLHEKYLFCISPVD 449
P + ++ L A++ + + ++ A +++ L + + E ++ +P
Sbjct: 384 PAGTPPSVVFEILPWMARVPNMFTLVDVAGAVQQAKLLETLGGGTMSISEYWVLLHTPAP 443
Query: 450 MNDDISSQGLTQFATNYSKKGIVQLREIFTPGLGSLRVAE 489
+ +++ ++ +++ Y + L I G+G +R+ E
Sbjct: 444 LKEEVVTEAVSRLVPAYKDRQSTSLISILD-GIGLMRILE 482
>gi|254566389|ref|XP_002490305.1| ATP-dependent RNA helicase, component of the mitochondrial
degradosome along with the RNase Dss1p [Komagataella
pastoris GS115]
gi|238030101|emb|CAY68024.1| ATP-dependent RNA helicase, component of the mitochondrial
degradosome along with the RNase Dss1p [Komagataella
pastoris GS115]
gi|328350701|emb|CCA37101.1| hypothetical protein PP7435_Chr1-0967 [Komagataella pastoris CBS
7435]
Length = 807
Score = 308 bits (789), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 163/367 (44%), Positives = 235/367 (64%), Gaps = 16/367 (4%)
Query: 57 FDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWE 116
F+ D+T P W+P ARK RK I+HVGPTNSGKT+ AL RLE S +G Y GPLRLLA E
Sbjct: 251 FNTIDITNPVEWFPEARKMKRKFIMHVGPTNSGKTYNALLRLEQSKTGYYAGPLRLLARE 310
Query: 117 VAKRLNKANVSCDLITGQER-EEVDGAKHRA----VTVEMADVVSDYDCAVIDEIQMLGC 171
V ++ K V C+L+TG+E + D ++A TVEM +D V+DEIQM+
Sbjct: 311 VYEKFQKKGVRCNLLTGEEVIPDYDDFGNQAGLTSGTVEMVPTTELFDVVVLDEIQMISD 370
Query: 172 KTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL 231
RG S+T ++G+ A E+HLCG+ ++VPLI++I+Q TGD+++V Y RL LV + P+
Sbjct: 371 PDRGQSWTNVVIGVLAKEIHLCGEESSVPLIKRIIQETGDEIEVNKYNRLGQLVVDDKPI 430
Query: 232 GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSE 291
S+++ GDCIV+FS++ I K IE K C ++YG+LPPE R+R+A +FND E
Sbjct: 431 -DISDLRRGDCIVSFSKNMILNTKSHIEDVTKFKCGVIYGALPPEVRSREAQKFNDG--E 487
Query: 292 FDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG------- 344
+D++VASDAIGMGLNLNI+R++F+T +K+DG L+ + KQI GRAGR+G
Sbjct: 488 YDLIVASDAIGMGLNLNINRVVFTTSQKYDGRSNIILSDSQFKQIGGRAGRFGVKSSTDS 547
Query: 345 SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHP-DSSLYGILE 403
+K P+G V+ D++ L + + L+ A L+P +L Y + P ++L +LE
Sbjct: 548 NKPPIGHVSAFDADILDNIRSGINAKIEYLQRAMLWPTDELWIKYYSMFPRGTTLVQMLE 607
Query: 404 HFLENAK 410
F E+ K
Sbjct: 608 RFEEDLK 614
>gi|452839024|gb|EME40964.1| hypothetical protein DOTSEDRAFT_91028 [Dothistroma septosporum
NZE10]
Length = 986
Score = 308 bits (788), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 178/438 (40%), Positives = 248/438 (56%), Gaps = 45/438 (10%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
DL P W+P R R V LHVGPTNSGKT+ AL RLE + SG+Y GPLRLLA EV
Sbjct: 215 LADLRYPTEWFPATRTLHRTVHLHVGPTNSGKTYHALQRLEKAKSGVYAGPLRLLAHEVY 274
Query: 119 KRLNKANVSCDLITGQEREEVDGA-----KH--RAVTVEMADVVSDYDCAVIDEIQMLGC 171
R+ C LITG+ER VD + +H A TVEM + + AVIDEIQM+G
Sbjct: 275 SRMTAKGKPCSLITGEERRAVDKSLKDDEEHTLSACTVEMVPLNKTMEVAVIDEIQMIGN 334
Query: 172 KTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL 231
RG+++T+ALLG+ A E+HLCG+ VPLI+++ GD +++ YERLSPL L
Sbjct: 335 PERGWAWTQALLGVKAKEVHLCGEARTVPLIKELCASVGDKLEIHRYERLSPLQMAESSL 394
Query: 232 -GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASS 290
G + ++ GDCIV+FS I+ L++ IE + VYGSLPPETR QA FND ++
Sbjct: 395 DGDLTKLRKGDCIVSFSVMGIHALRRQIEKTTGRKVATVYGSLPPETRAAQARLFNDPNN 454
Query: 291 EFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS----- 345
+FD LVASDA+GMGLNL I RIIF T KFDG + R L + ++KQIAGRAGR+ +
Sbjct: 455 DFDYLVASDAVGMGLNLAIKRIIFETSSKFDGTQRRTLAIADIKQIAGRAGRFRTAAQAS 514
Query: 346 --------------------------KFP--VGEVTCLDSEDLPLLHKSLL-EPSPMLES 376
+FP VG VT ++ D P++ ++ EP P ++S
Sbjct: 515 DAPASEQDLTAAKGEIAAGPPSGKQGEFPENVGLVTTMERFDFPIVSAAMQSEPEP-IQS 573
Query: 377 AGLFPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLP- 434
AGLFP ++ ++ P + + +L E +++ + + + VA +I+ +
Sbjct: 574 AGLFPPASVLERFTSYFPPGTPFSYMLTRLHELSQMHTRFHLCGLRDQIWVADLIEPVEG 633
Query: 435 LRLHEKYLFCISPVDMND 452
L + ++ C SP D
Sbjct: 634 LTVADRNTICSSPASKAD 651
>gi|453081498|gb|EMF09547.1| hypothetical protein SEPMUDRAFT_72359 [Mycosphaerella populorum
SO2202]
Length = 745
Score = 307 bits (786), Expect = 8e-81, Method: Compositional matrix adjust.
Identities = 177/457 (38%), Positives = 262/457 (57%), Gaps = 39/457 (8%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
TDL P+ W+P R R + LHVGPTNSGKT+ AL RLE + +G Y GPLRLLA EV
Sbjct: 61 MTDLRYPNEWFPATRMMHRTIHLHVGPTNSGKTYHALQRLEQAKTGTYAGPLRLLAHEVF 120
Query: 119 KRLNKANVSCDLITGQER---------EEVDGA-KHRAVTVEMADVVSDYDCAVIDEIQM 168
RLN C L+TG+ER E ++GA A TVEM + D AVIDEIQM
Sbjct: 121 TRLNAKGKPCALVTGEERRLPPGSQPDEPIEGAFNMTACTVEMMQLNKPLDVAVIDEIQM 180
Query: 169 LGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLN 228
+G RG+++T+ LLG+ A E+HLCG+ VPLI+++ G+ +++ Y+RLSPL +
Sbjct: 181 IGNAERGWAWTQGLLGVMAREVHLCGEERTVPLIKELCASVGEKLEIHRYQRLSPLAVSD 240
Query: 229 VPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFND 287
L G ++ GDCIV+FS I+ L+K +E + VYGSLPPETR +QA FND
Sbjct: 241 SSLDGDLRKLRKGDCIVSFSVMGIHALRKQVEKSTGRKVATVYGSLPPETRAQQARLFND 300
Query: 288 ASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---- 343
+++D LVASDA+GMGLNL I RIIF + KF+GV + L++ ++KQI GRAGR+
Sbjct: 301 PDNDYDYLVASDAVGMGLNLAIRRIIFESSSKFNGVSRQRLSIADIKQIGGRAGRFRIAE 360
Query: 344 ----------------GSKFPVGEVTCLDSEDLPLLHKSL-LEPSPMLESAGLFPNFDLI 386
G +G VT L+ D P++ ++ EP P ++SAGLFP ++
Sbjct: 361 QGKIGAASAEELAAAKGEAANLGLVTTLERFDFPVVRAAMSAEPEP-IKSAGLFPPAAIL 419
Query: 387 YMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFC 444
++ P + + IL E +++ + + + +A +I+ + L + ++ + C
Sbjct: 420 ERFAGYFPPGTPFSYILTRLHELSQIHSRFHLCGLRDQVWIADIIEGVEGLSVSDRNILC 479
Query: 445 ISPVDMND-DISSQGLTQFA---TNYSKKGIVQLREI 477
SP +D D+ Q + +A + S I+ ++E+
Sbjct: 480 SSPAAKSDLDLWKQLMPAYARCISTQSGGNILDIKEL 516
>gi|347839231|emb|CCD53803.1| hypothetical protein [Botryotinia fuckeliana]
Length = 840
Score = 307 bits (786), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 170/435 (39%), Positives = 249/435 (57%), Gaps = 42/435 (9%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
D P WYP R R LHVGPTNSGKT+ AL +LE+++SGIY GPLRLLA EV
Sbjct: 204 LADFRYPIEWYPATRAMQRTFHLHVGPTNSGKTYHALQKLEAANSGIYAGPLRLLAHEVY 263
Query: 119 KRLNKANVSCDLITGQEREEVDGAKH--RAVTVEMADVVSDYDCAVIDEIQMLGCKTRGF 176
R N C LITG+ER +GAK ++ TVEM + S D AVIDEIQM+G + RG+
Sbjct: 264 TRFNAKGKPCSLITGEERRIPEGAKDTMKSCTVEMVPLNSKVDVAVIDEIQMIGDEERGW 323
Query: 177 SFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS--- 233
++T+A+LG+ A E+HLCG+ LI+++ + GD + + +YERL L + L S
Sbjct: 324 AWTQAVLGVQAKEVHLCGEVRTTDLIKKLCAMMGDKLIIHNYERLGKLQVMAKSLTSRHS 383
Query: 234 ------------FSNIQTGDCIVTFSRHAIYRLKKAIES--RGKHLCSIVYGSLPPETRT 279
S ++ GD ++ FSR I+ +K AIE+ RGK C+IVYGSLPPETR
Sbjct: 384 ERDGPSGKESTPVSKLEKGDAVILFSRMRIHAMKNAIEAHHRGKR-CAIVYGSLPPETRA 442
Query: 280 RQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGR 339
+QA FND +++D LVAS+A+GMGLNL+I R+I ++K+ +G + L + E+KQIAGR
Sbjct: 443 QQAALFNDPDNDYDFLVASNAVGMGLNLSIKRVILESVKRHNGTDFMTLPISEIKQIAGR 502
Query: 340 AGRYG---------------------SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAG 378
AGRY ++ PVG VT D +L ++ + + + +AG
Sbjct: 503 AGRYKTARDAIEAGPIDVADGIPTKPTEPPVGLVTTFFKTDHEILSSAMSKEAAQMTTAG 562
Query: 379 LFPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRL 437
+FP ++I ++ P S+ + ++ E LS + +E +A +I + L +
Sbjct: 563 IFPPANVIERFAEYFPKSTPFSYVILRLHELGSLSSEFHLCQLKEQAAIADIIQEFDLTI 622
Query: 438 HEKYLFCISPVDMND 452
+ +F +PV + D
Sbjct: 623 RNRLIFLAAPVSLRD 637
>gi|154299770|ref|XP_001550303.1| hypothetical protein BC1G_11511 [Botryotinia fuckeliana B05.10]
Length = 720
Score = 307 bits (786), Expect = 9e-81, Method: Compositional matrix adjust.
Identities = 170/435 (39%), Positives = 249/435 (57%), Gaps = 42/435 (9%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
D P WYP R R LHVGPTNSGKT+ AL +LE+++SGIY GPLRLLA EV
Sbjct: 112 LADFRYPIEWYPATRAMQRTFHLHVGPTNSGKTYHALQKLEAANSGIYAGPLRLLAHEVY 171
Query: 119 KRLNKANVSCDLITGQEREEVDGAKH--RAVTVEMADVVSDYDCAVIDEIQMLGCKTRGF 176
R N C LITG+ER +GAK ++ TVEM + S D AVIDEIQM+G + RG+
Sbjct: 172 TRFNAKGKPCSLITGEERRIPEGAKDTMKSCTVEMVPLNSKVDVAVIDEIQMIGDEERGW 231
Query: 177 SFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS--- 233
++T+A+LG+ A E+HLCG+ LI+++ + GD + + +YERL L + L S
Sbjct: 232 AWTQAVLGVQAKEVHLCGEVRTTDLIKKLCAMMGDKLIIHNYERLGKLQVMAKSLTSRHS 291
Query: 234 ------------FSNIQTGDCIVTFSRHAIYRLKKAIES--RGKHLCSIVYGSLPPETRT 279
S ++ GD ++ FSR I+ +K AIE+ RGK C+IVYGSLPPETR
Sbjct: 292 ERDGPSGKESTPVSKLEKGDAVILFSRMRIHAMKNAIEAHHRGKR-CAIVYGSLPPETRA 350
Query: 280 RQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGR 339
+QA FND +++D LVAS+A+GMGLNL+I R+I ++K+ +G + L + E+KQIAGR
Sbjct: 351 QQAALFNDPDNDYDFLVASNAVGMGLNLSIKRVILESVKRHNGTDFMTLPISEIKQIAGR 410
Query: 340 AGRYG---------------------SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAG 378
AGRY ++ PVG VT D +L ++ + + + +AG
Sbjct: 411 AGRYKTARDAIEAGPIDVADGIPTKPTEPPVGLVTTFFKTDHEILSSAMSKEAAQMTTAG 470
Query: 379 LFPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRL 437
+FP ++I ++ P S+ + ++ E LS + +E +A +I + L +
Sbjct: 471 IFPPANVIERFAEYFPKSTPFSYVILRLHELGSLSSEFHLCQLKEQAAIADIIQEFDLTI 530
Query: 438 HEKYLFCISPVDMND 452
+ +F +PV + D
Sbjct: 531 RNRLIFLAAPVSLRD 545
>gi|295670045|ref|XP_002795570.1| ATP-dependent RNA helicase suv3 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284655|gb|EEH40221.1| ATP-dependent RNA helicase suv3 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 716
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 181/426 (42%), Positives = 251/426 (58%), Gaps = 23/426 (5%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
DL WYP AR R + LHVGPTNSGKT+ AL RLE++ +G Y GPLRLLA EV
Sbjct: 141 LADLRNATEWYPAARSLYRTIHLHVGPTNSGKTYHALKRLEAAKTGFYAGPLRLLAHEVY 200
Query: 119 KRLNKANVSCDLITGQEREEVDGA--KHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGF 176
RLN + C L+TG E + +G + TVEM + D D VIDEIQM+ RG+
Sbjct: 201 TRLNAKGIQCSLVTGDEVKISEGQIPGIYSNTVEMVPLGQDVDVGVIDEIQMIADPFRGW 260
Query: 177 SFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFS 235
++TRALLG A+ELHLCG+ VPLI+ + + GD +++ YERL+PL +N L G+ +
Sbjct: 261 AWTRALLGARAHELHLCGEERVVPLIRDLAGLMGDRLEIHHYERLNPLKAMNKSLKGNLA 320
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N+Q GDC+V FSR I+ LK+ IE +IVYGSLP E R++QA FND ++++D L
Sbjct: 321 NLQKGDCVVAFSRVGIHGLKQDIEKATGRRAAIVYGSLPAEIRSQQADLFNDPNNDYDFL 380
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY------------ 343
VASDAIGMGLNL+ RIIF ++ + L L+V ++KQI GRAGRY
Sbjct: 381 VASDAIGMGLNLSCKRIIFESVVRRLPTGLTRLSVSQIKQIGGRAGRYRPASHVTETDSC 440
Query: 344 ----GSKFPVGEVTCLDSEDLPLLHKSL-LEPSPMLESAGLFPNFDLIYMYSRLHPDSSL 398
++ VG VT L+ DL + K+L +P P+L SAGL P +I + P ++
Sbjct: 441 IPGKDAETNVGFVTSLEDVDLSYIRKALSAKPEPIL-SAGLLPPDYVIKRFVEHFPANTP 499
Query: 399 YGILEHFLENAKLSE-NYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISS 456
+ + L N L + N+F A+ + ++A ID + L + +K +F +P M D S
Sbjct: 500 FSYVLQRLHNIALVDPNFFIADNQGRAQIAEAIDGIKGLGIDDKMVFLSAPAHMRDHQMS 559
Query: 457 QGLTQF 462
+F
Sbjct: 560 TIFREF 565
>gi|302896154|ref|XP_003046957.1| hypothetical protein NECHADRAFT_46281 [Nectria haematococca mpVI
77-13-4]
gi|256727885|gb|EEU41244.1| hypothetical protein NECHADRAFT_46281 [Nectria haematococca mpVI
77-13-4]
Length = 764
Score = 307 bits (786), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 180/439 (41%), Positives = 251/439 (57%), Gaps = 24/439 (5%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D P+ W+P R R + LHVGPTNSGKT++AL LE+S G+Y GPLRLLA EV +R
Sbjct: 193 DFRFPYEWFPATRTMQRTIHLHVGPTNSGKTYRALKALENSKRGVYAGPLRLLANEVYQR 252
Query: 121 LNKANVSCDLITGQE-REEVDGAKH-RAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSF 178
L + C L+TG+E R D + + TVEM V YD AVIDEIQM+ RG +
Sbjct: 253 LQAKGLPCALMTGEEVRIPQDTDTYFTSCTVEMIPVNEPYDVAVIDEIQMIADPDRGSGW 312
Query: 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS-FSNI 237
T ALLG+ A E+HLCG+ V LIQ I GD+ V YERLSPL ++ + ++ +
Sbjct: 313 TTALLGVMAKEVHLCGEERTVKLIQSICAAIGDECIVHRYERLSPLETMSEAIDEDYNRL 372
Query: 238 QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 297
+ GD IV FSR ++ LK IE C+I+YGSLPPE R +QA FND ++++D +VA
Sbjct: 373 EKGDAIVAFSRMNLHALKTTIEKHTGRRCAIIYGSLPPEVRVQQAALFNDPNNDYDFIVA 432
Query: 298 SDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY-------------- 343
SDAIGMGLNL I R+I ++ K+DG + R LT PE+KQI GRAGRY
Sbjct: 433 SDAIGMGLNLEIRRVILDSVTKYDGNQNRHLTYPELKQIGGRAGRYRTARQATEADNGAD 492
Query: 344 -GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHP-DSSLYGI 401
G K VG VT + +DL +H++ +++A + P + +S P D+ L I
Sbjct: 493 DGRK--VGYVTTMARQDLKNVHRAFRSSVDDIDAAYVTPPAAAVERFSTYFPKDTPLSFI 550
Query: 402 LEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQ 461
L E A +S+N+ + L++A I +PL ++++ C PV + S L
Sbjct: 551 LMRIRELASVSKNFRLGIAPDKLEIADAIQHIPLTIYDRLTLCHLPVWQRAENSMDVLRA 610
Query: 462 FATNYSKKG---IVQLREI 477
A S+ G ++ ++EI
Sbjct: 611 LAKIISENGRGDLLSIKEI 629
>gi|408393411|gb|EKJ72675.1| hypothetical protein FPSE_07075 [Fusarium pseudograminearum CS3096]
Length = 752
Score = 306 bits (785), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 178/456 (39%), Positives = 257/456 (56%), Gaps = 21/456 (4%)
Query: 43 VIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSS 102
+I + + G D P+ W+P R RK+ +HVGPTNSGKT++AL LE+S
Sbjct: 169 IIQQKFSKGLEESHKRLLDFRFPYEWFPATRAMQRKIHVHVGPTNSGKTYRALKALEASK 228
Query: 103 SGIYCGPLRLLAWEVAKRLNKANVSCDLITGQE-REEVDGAKH-RAVTVEMADVVSDYDC 160
G+Y GPLRLLA EV +RL + C L+TG+E R D + + TVEM V +D
Sbjct: 229 RGVYAGPLRLLANEVYQRLTAKGLPCALLTGEEVRVPSDTDTYFTSCTVEMVPVNEQFDV 288
Query: 161 AVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 220
AVIDEIQM+ + RG + ALLG+ A E+HLCG+ V LI+ I GD+ V YER
Sbjct: 289 AVIDEIQMIADEDRGQGWATALLGVQAKEVHLCGEERTVKLIESICASIGDECIVHRYER 348
Query: 221 LSPLVPL-NVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRT 279
LSPL P+ N +G + ++ GD +V FSR ++ LK IE + C+I+YGSLPPE R
Sbjct: 349 LSPLEPMENALMGDYGKLEKGDAVVAFSRLNLHALKLTIEKKTGRRCAIIYGSLPPEVRV 408
Query: 280 RQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGR 339
+QA FND +++D +VASDAIGMGLNL I R+I T K+DG R L+ PE+KQI GR
Sbjct: 409 QQAALFNDPDNDYDFIVASDAIGMGLNLEIRRVILETCAKYDGSHNRLLSYPELKQIGGR 468
Query: 340 AGRYGSK--------------FPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 385
AGRY + VG VT +D +DL ++ ++ P +E A + P +
Sbjct: 469 AGRYKTARNATEGTESEVTEIRKVGYVTTMDRQDLKIVREAFEANVPDIEYAYVTPPASV 528
Query: 386 IYMYSRLHPDSS-LYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFC 444
+ +S P + L IL E A +S+ + E L++A +I +PL ++++ F
Sbjct: 529 VERFSTYFPSQTPLSFILMRIKELASVSKLFRLHISTEKLEIADMIQDIPLTIYDRLTFT 588
Query: 445 ISPVDMNDDISSQGLTQFATNYSKKG---IVQLREI 477
P+ + + L A+ +K G ++ ++EI
Sbjct: 589 NLPIAARAENAVPVLRALASVVAKNGSGDLLSIKEI 624
>gi|392596329|gb|EIW85652.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 889
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 184/468 (39%), Positives = 258/468 (55%), Gaps = 54/468 (11%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DL+ P W+P+AR RKVI+HVGPTNSGKTH AL L ++ G+Y GPLRLLA E+ +R
Sbjct: 237 DLSYPAEWFPVARAMRRKVIMHVGPTNSGKTHNALRALAAARCGVYAGPLRLLAHEIWER 296
Query: 121 LNKANV------------------------------------------------SCDLIT 132
LNK + +C+L T
Sbjct: 297 LNKGQIVPLGETPDADARPDENTNFDLEPKSAGAGAATAATVAVTKDGHAKYARACNLRT 356
Query: 133 GQE-REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH 191
G+E R D A+ + TVEM ++ + D AVIDEIQM+ RG ++T A+LG+ A ELH
Sbjct: 357 GEEIRIVEDFAELTSCTVEMLELDAQPDVAVIDEIQMIADPERGPAWTHAVLGLPAKELH 416
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHA 250
LCG+ AVP+++ IL+ TGD++ V YERLSPL L G + ++ GDC+VTFSR
Sbjct: 417 LCGEETAVPVVEAILRDTGDELIVNRYERLSPLSVEESSLDGDWGLVRKGDCVVTFSRTG 476
Query: 251 IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS 310
I+ +K+ IE C++ YG LPPE R+ QA FND +SE+DV++ SDAIGMGLNL I
Sbjct: 477 IFNIKREIEEATGLRCAVAYGKLPPEIRSEQAALFNDPNSEYDVMIGSDAIGMGLNLKIK 536
Query: 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV-GEVTCLDSEDLPLLHKSLLE 369
R++F T++KFDG R L++ ++KQIAGRAGRYG G VT L DLP+LHK+L
Sbjct: 537 RVVFETLRKFDGTRERWLSLSQIKQIAGRAGRYGLHAEAGGTVTTLTPTDLPMLHKALAT 596
Query: 370 PSPMLESAGLFPNFDLIYMYSRLHP-DSSLYGILEHFLENAKLSENYFFANCEEVLKVAT 428
P+P + A L + S P ++S+ L+ ++ + + ++A
Sbjct: 597 PAPAVPCAILDVGGARLEALSHALPANASMEAHLQVPTYISRRQRPFGVVRHARLPQIAE 656
Query: 429 VIDQ--LPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQL 474
+D L L EK +PV D ++ + L +F Y +V L
Sbjct: 657 FLDTRGTDLTLAEKMTLAYAPVAWQDQLTMEVLGEFCRMYRNTVLVDL 704
>gi|189206057|ref|XP_001939363.1| ATP-dependent RNA helicase SUV3, mitochondrial precursor
[Pyrenophora tritici-repentis Pt-1C-BFP]
gi|187975456|gb|EDU42082.1| ATP-dependent RNA helicase SUV3, mitochondrial precursor
[Pyrenophora tritici-repentis Pt-1C-BFP]
Length = 761
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 178/448 (39%), Positives = 250/448 (55%), Gaps = 44/448 (9%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DL P WYP R R V +HVGPTNSGKT+ AL RLE SGIY GPLRLLA EV R
Sbjct: 169 DLRYPAEWYPATRGIQRTVHMHVGPTNSGKTYHALKRLEEVDSGIYLGPLRLLAHEVYTR 228
Query: 121 LNKANVSCDLITGQEREEVDGAKHR--AVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSF 178
LN C L+TG+E+ D + R + TVEMA + + +D AVIDEIQM+ + RG+++
Sbjct: 229 LNAKGKPCALVTGEEQRMPDDTRARMFSCTVEMAPLNTPFDVAVIDEIQMISHQERGWAW 288
Query: 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSNI 237
T+A LG+ A E+HLCG+ VP+++++ + GD V V Y RL+PL P++ L G+ + +
Sbjct: 289 TQAFLGLQAREIHLCGEARTVPIMRELCALVGDKVHVHEYNRLTPLQPMDRSLQGNLNLL 348
Query: 238 QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 297
+ GDC+V FS AI+ L++ IE + C+IVYG LPPETR +QA FND +++D LVA
Sbjct: 349 EKGDCVVAFSVLAIHALRRLIERKTGKKCAIVYGGLPPETRAQQARLFNDPDNDYDYLVA 408
Query: 298 SDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS------------ 345
SDAIGMGLNL I R+IF T K +G +L L + E+KQIAGRAGRY +
Sbjct: 409 SDAIGMGLNLAIKRVIFETTVKNNGEQLVPLQISEIKQIAGRAGRYKTAHQAITKDSEKA 468
Query: 346 ---------------KFP------------VGEVTCLDSEDLPLLHKSLLEPSPMLESAG 378
K P VG T L+ DL L + + + SAG
Sbjct: 469 SVADTAIDPVIGLDDKQPDTEEVVQAEPQTVGWATTLERNDLVSLKAGMNKEPEAITSAG 528
Query: 379 LFPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LR 436
LFP ++ ++ P + + IL ++++ + E L +A V+ L L
Sbjct: 529 LFPPSVIVERFASYFPPGTPFSYILLRLHTISEMNPRFHLCALREQLAIADVLHPLENLS 588
Query: 437 LHEKYLFCISPVDMNDDISSQGLTQFAT 464
+ ++ C +PV ++ L + AT
Sbjct: 589 IQDRITLCAAPVSSRKANETKFLKELAT 616
>gi|452002983|gb|EMD95440.1| hypothetical protein COCHEDRAFT_1126086 [Cochliobolus
heterostrophus C5]
Length = 794
Score = 305 bits (782), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 172/437 (39%), Positives = 246/437 (56%), Gaps = 44/437 (10%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
+ DL P WYP R+ R V +HVGPTNSGKT+ AL RLE SGIY GPLRLLA EV
Sbjct: 161 EVADLRYPAEWYPATREIPRTVHMHVGPTNSGKTYHALKRLEEVKSGIYLGPLRLLAHEV 220
Query: 118 AKRLNKANVSCDLITGQEREEVDG--AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
RL+ +C L+TG+E+ G A + TVEMA + + +D AVIDEIQM+ RG
Sbjct: 221 YTRLDAKGKACALVTGEEQRMPQGERAYMYSCTVEMAPLNTHFDVAVIDEIQMISHPERG 280
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLG-SF 234
+++T+A LG+ A E+HLCG+ VPL++++ + GD + V Y RL+PL LG
Sbjct: 281 WAWTQAFLGLQAREIHLCGEARTVPLMRELCALVGDKIHVHEYNRLTPLKVEPKSLGGKL 340
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
+N+Q GDCIV F+ I+ L++ IE + C+IVYGSLPPETR +QA FND +E+D
Sbjct: 341 NNLQKGDCIVAFTVLGIHALRREIERKTGRKCAIVYGSLPPETRAQQARLFNDPDNEYDY 400
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS--------- 345
LVASDAIGMGLNL I R+IF + K DGV+ L + ++KQIAGRAGRY +
Sbjct: 401 LVASDAIGMGLNLAIKRVIFESTMKTDGVKYASLQISDLKQIAGRAGRYKTAHQAVNADS 460
Query: 346 --------------------------KFP----VGEVTCLDSEDLPLLHKSLLEPSPMLE 375
K P VG VT L+ ED L + + ++
Sbjct: 461 KQVSVANGAIDPVIGLDDKHSDADEIKAPESKTVGWVTTLEHEDHKYLKSGMEKEPEEIK 520
Query: 376 SAGLFPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLP 434
+AGLFP ++ ++ P + + I+ + + + ++ ++ L +A I +
Sbjct: 521 AAGLFPPSQIVERFANYFPPGTPFSYIMLRLHDISNIHPRFYLCTLKDQLAIADAIHTVK 580
Query: 435 -LRLHEKYLFCISPVDM 450
L + ++ C +P++M
Sbjct: 581 NLSVQDRITICAAPINM 597
>gi|398392779|ref|XP_003849849.1| hypothetical protein MYCGRDRAFT_47262, partial [Zymoseptoria
tritici IPO323]
gi|339469726|gb|EGP84825.1| hypothetical protein MYCGRDRAFT_47262 [Zymoseptoria tritici IPO323]
Length = 731
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 178/439 (40%), Positives = 249/439 (56%), Gaps = 45/439 (10%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
D DL P W+P R++ R++ LHVGPTNSGKT+ AL RLE + SG Y GPLRLLA EV
Sbjct: 32 DLADLRYPSEWFPATRRRPREIHLHVGPTNSGKTYHALQRLEQAESGCYAGPLRLLAHEV 91
Query: 118 AKRLNKANVSCDLITGQERE-----------------EVDGAKHR---AVTVEMADVVSD 157
R+N V C L+TG+ER EVD HR + TVEM + +
Sbjct: 92 YTRMNAKGVPCRLVTGEERRSAEERPAATQEQPGKAGEVDSNLHRYLTSCTVEMVPLNTK 151
Query: 158 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 217
D AVIDEIQM+G RG+++T ALLG+ A E+HLCG+ VPLI +I GD + V
Sbjct: 152 VDVAVIDEIQMIGDPDRGWAWTNALLGVQAKEVHLCGEERTVPLITEICASIGDKLHVHH 211
Query: 218 YERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 276
Y+RLSPL + L G S ++ GDCIV+FS I+ L++ IE R +IVYGSLPPE
Sbjct: 212 YQRLSPLQVASTSLNGDLSLLRKGDCIVSFSVVGIHALRREIEKRTGRKVAIVYGSLPPE 271
Query: 277 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 336
TR +QA FND ++++D LVASDA+GMGLNL I R+IF + KFDGV L++ +KQI
Sbjct: 272 TRAQQARLFNDPNNDYDFLVASDAVGMGLNLAIKRMIFESSSKFDGVARGPLSIAAIKQI 331
Query: 337 AGRAGRY------------------GSKFP--VGEVTCLDSEDLPLLHKSLL-EPSPMLE 375
GRAGR+ P +G VT L+ D ++ ++ EP P L
Sbjct: 332 GGRAGRFPRAAQPTIDPHGVYIMNRAGDVPDNIGLVTTLEDFDYSVVLSAMRSEPEP-LA 390
Query: 376 SAGLFPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLP 434
+AG+FP ++ ++ P + + IL E +++ + + + VA +I+ +
Sbjct: 391 TAGIFPPTPVLERFASYFPPGTPFSYILTRLHELSQMHRRFHLCGLRDQVWVADLIEPVQ 450
Query: 435 -LRLHEKYLFCISPVDMND 452
L ++++ + C P D
Sbjct: 451 GLTINDRNMICACPAAKGD 469
>gi|396465720|ref|XP_003837468.1| hypothetical protein LEMA_P037020.1 [Leptosphaeria maculans JN3]
gi|312214026|emb|CBX94028.1| hypothetical protein LEMA_P037020.1 [Leptosphaeria maculans JN3]
Length = 794
Score = 305 bits (782), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 180/451 (39%), Positives = 253/451 (56%), Gaps = 36/451 (7%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DL P W+P R+ R V LHVGPTNSGKT+ AL RLE + +GIY GPLRLLA EV R
Sbjct: 164 DLRYPAEWFPATRQIPRTVHLHVGPTNSGKTYHALKRLEQADTGIYLGPLRLLAHEVYTR 223
Query: 121 LNKANVSCDLITGQERE--EVDGAKHR-AVTVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
L SC L+TG+E+ E DG + TVEMA + + +D AVIDEIQM+ RG++
Sbjct: 224 LTAKGKSCALVTGEEQRLPEGDGLPGMFSCTVEMAPLNTRFDVAVIDEIQMISHAERGWA 283
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLG-SFSN 236
+T+A LGI A E+HLCG+ VP+++++ + GD V V Y RL+PL + L
Sbjct: 284 WTQAFLGIQAKEIHLCGEARTVPIMRELAALAGDKVHVHEYARLTPLQVMPKSLNRQLEK 343
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESR-GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
++ GDC+V FS I+ +++ IE + GKH C+IVYGSLPPETR +QA FND +++D L
Sbjct: 344 LEKGDCVVAFSVLGIHAIRREIEKKTGKH-CAIVYGSLPPETRAQQAALFNDPDNDYDFL 402
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFP------- 348
VASDAIGMGLNL I RIIF ++ K DG+ L + EVKQIAGRAGRY +
Sbjct: 403 VASDAIGMGLNLAIKRIIFESLMKSDGLYYNPLQISEVKQIAGRAGRYKTAHQAVTTDTQ 462
Query: 349 -------------------VGEVTCLDSEDLPLLHKSL-LEPSPMLESAGLFPNFDLIYM 388
VG VT + +D L +++ +EP P + +AGLFP +I
Sbjct: 463 ASDPTIALDDTPPFIEPKTVGWVTTFEKDDHERLKRAMAMEPEP-IHTAGLFPPSLMIER 521
Query: 389 YSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCIS 446
++ P + + I+ E +L + + L +A I + L E+ C +
Sbjct: 522 FANYFPPRTPFSYIMLRLHEICQLHSRFHLCRLRDQLDIADAIHPVKSLSTQERITLCNA 581
Query: 447 PVDMNDDISSQGLTQFATNYSKKGIVQLREI 477
P +M +++ + A + L E+
Sbjct: 582 PANMREELEKSFMRSLADCIANNRAAHLLEL 612
>gi|406868649|gb|EKD21686.1| hypothetical protein MBM_00799 [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 1001
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 178/455 (39%), Positives = 254/455 (55%), Gaps = 31/455 (6%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
DL P W+P R R V LH+GPTNSGKT+ AL RLE++ SGIY GPLRLLA EV
Sbjct: 289 LADLRYPLEWFPATRALQRTVHLHIGPTNSGKTYHALQRLEAADSGIYAGPLRLLAHEVY 348
Query: 119 KRLNKANVSCDLITGQERE--EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGF 176
RLN C LITG+ER E + + TVEM + D AVIDEIQM+G RG+
Sbjct: 349 TRLNAKGKPCALITGEERRIPENFPSVMNSCTVEMVPLNCTVDVAVIDEIQMMGDDERGW 408
Query: 177 SFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFS 235
++T+A LG+ A E+HLCG+ +I + GD + V YERLSPL + L G
Sbjct: 409 AWTQAFLGVMAKEVHLCGETRTREIITDLCAAMGDKLVVHEYERLSPLKTQDHSLNGDLR 468
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N++ GD I+ FSR AI+ +K+ +E ++VYGSLPPETR +QA FND ++++D L
Sbjct: 469 NLEKGDAIILFSRVAIHAMKQDVERITGKRAAVVYGSLPPETRAQQAALFNDPNNDYDYL 528
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS---------- 345
VASDA+GMGLNL+I R+IF T K DGV R + E+KQIAGRAGR+ +
Sbjct: 529 VASDAVGMGLNLSIKRVIFETTSKHDGVAHRIIKNHEIKQIAGRAGRFKTAQQAIDKGKD 588
Query: 346 --------------KFPV---GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYM 388
K P G VT L++ DLP++ +++ P L SAG+FP D++
Sbjct: 589 GDEQVVDPLQLDTVKKPSPAGGMVTTLENFDLPIVRRAMRASVPPLASAGIFPPGDILLR 648
Query: 389 YSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISP 447
++ P + + I+ + A L ++ ++ +K+A I + L ++ +P
Sbjct: 649 FANYFPPKTPFSYIILRLHDMASLGSHFHLCRLKDQIKIADAIQEFDLSNMDRISLMSAP 708
Query: 448 VDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGL 482
+ M D S + + A +++ L ++ P L
Sbjct: 709 MSMRDHGSIDFIKELANCIAEQKNGALLDLQVPDL 743
>gi|407918858|gb|EKG12120.1| Helicase [Macrophomina phaseolina MS6]
Length = 775
Score = 305 bits (781), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 180/487 (36%), Positives = 263/487 (54%), Gaps = 55/487 (11%)
Query: 32 EKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKT 91
+++ AF +S+ + DL P W+P RK RK+ILHVGPTNSGKT
Sbjct: 60 QQLRNAFLGHVASTKSFSQDDYQNQKALADLRYPTEWFPATRKMQRKIILHVGPTNSGKT 119
Query: 92 HQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGA---KHRAVT 148
+ AL RLE + +G Y GPLRLLA EV R+N +C LITG+ER G K A T
Sbjct: 120 YHALKRLEQAETGAYAGPLRLLAHEVYTRMNAKGAACALITGEERRRPPGEDRPKLTACT 179
Query: 149 VEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV 208
VEM + D VIDEIQM+G RG+++T+A+LG+ A ELHLCG+ VPLI+++
Sbjct: 180 VEMIPLHMTMDVCVIDEIQMIGDLDRGWAWTQAVLGVQAKELHLCGEARTVPLIRELAAT 239
Query: 209 TGDDVKVQSYERLSPLVPLNVPLG-SFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCS 267
GD+V+V +YERL+ L +G F N++ GDCIV FS I+ L++ I + +
Sbjct: 240 MGDEVEVNTYERLTSLEMDTRHIGYDFKNLRKGDCIVAFSIMEIHALRQTIMKQTGKKVA 299
Query: 268 IVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRD 327
IVYGSLPPETR QA FND +S +D+LVASDAIGMGLNL++ RIIF+++ KF+G E
Sbjct: 300 IVYGSLPPETRAHQARLFNDPNSGYDILVASDAIGMGLNLSVKRIIFASIHKFNGFEHVT 359
Query: 328 LTVPEVKQIAGRAGRYGS------------------------------------------ 345
L++P +KQIAGRAGRY +
Sbjct: 360 LSIPHLKQIAGRAGRYKTAHEANKEAEKAPQNADAVDASGTILDDFASEQQSDAPNSETE 419
Query: 346 KFPVGE-------VTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSL 398
+F E VT L+ + + K+L + +++AGLFP +I ++ P +
Sbjct: 420 QFEFAEPPPGGGLVTTLEKAHMRYVSKALKDEPEAIKTAGLFPPDPIIERFANYFPPGTP 479
Query: 399 YG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISS 456
+ +L + +++ + + ++ L +A I + L + ++ FC +P ++ D
Sbjct: 480 FSYVLLRLHDISRVHKRFHICVLKDQLSIADTIQAVDGLSVLDRITFCAAPANLKTDKDR 539
Query: 457 QGLTQFA 463
+ L A
Sbjct: 540 EVLLNLA 546
>gi|451856523|gb|EMD69814.1| hypothetical protein COCSADRAFT_32486 [Cochliobolus sativus ND90Pr]
Length = 753
Score = 304 bits (778), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 171/437 (39%), Positives = 245/437 (56%), Gaps = 44/437 (10%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
+ DL P WYP R+ R V +HVGPTNSGKT+ AL RLE SGIY GPLRLLA EV
Sbjct: 161 EVADLRYPAEWYPATREIPRTVHMHVGPTNSGKTYHALKRLEEVKSGIYLGPLRLLAHEV 220
Query: 118 AKRLNKANVSCDLITGQEREEVDG--AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
RL+ +C L+TG+E+ G A + TVEMA + + +D AVIDEIQM+ RG
Sbjct: 221 YTRLDAKGKACALVTGEEQRMPQGERAYMYSCTVEMAPLNTHFDVAVIDEIQMISHPERG 280
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLG-SF 234
+++T+A LG+ A E+HLCG+ VPL++++ + GD + V Y RL+PL LG
Sbjct: 281 WAWTQAFLGLQAREIHLCGEARTVPLMRELCALVGDKIHVHEYNRLTPLKVEPKSLGGKL 340
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
+ +Q GDCIV F+ I+ L++ IE + C+IVYGSLPPETR +QA FND +E+D
Sbjct: 341 NKLQKGDCIVAFTVLGIHALRREIERKTGKKCAIVYGSLPPETRAQQARLFNDPDNEYDY 400
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS--------- 345
LVASDAIGMGLNL I R+IF + K DG+ L + ++KQIAGRAGRY +
Sbjct: 401 LVASDAIGMGLNLAIKRVIFESTMKTDGINYHSLQISDLKQIAGRAGRYKTAHQAVNADS 460
Query: 346 --------------------------KFP----VGEVTCLDSEDLPLLHKSLLEPSPMLE 375
K P VG VT L+ ED L + + ++
Sbjct: 461 KQVSVADGVIDPVIGLDDKHSNADEIKAPESKTVGWVTTLEHEDHKYLKSGMAKEPEEIK 520
Query: 376 SAGLFPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLP 434
+AGLFP ++ ++ P + + I+ + + + ++ ++ L +A VI +
Sbjct: 521 AAGLFPPSQIVERFANYFPPGTPFSYIMLRLHDISNIHPRFYLCTLKDQLAIADVIHTVK 580
Query: 435 -LRLHEKYLFCISPVDM 450
L + ++ C +P++M
Sbjct: 581 NLGIQDRITVCAAPINM 597
>gi|219113047|ref|XP_002186107.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582957|gb|ACI65577.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 306
Score = 303 bits (777), Expect = 9e-80, Method: Compositional matrix adjust.
Identities = 159/301 (52%), Positives = 213/301 (70%), Gaps = 7/301 (2%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
TDLT+PH WYP AR RKVI H GPTNSGKT++AL RL+ ++ G+Y GPLRLLA E+ +
Sbjct: 6 TDLTKPHEWYPHARLNRRKVIYHGGPTNSGKTYEALERLKLANKGMYLGPLRLLAAEIYE 65
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
+L A V C+L TGQER E+ A H A TVEMA VV D+D VIDEIQM+ + RGF++T
Sbjct: 66 KLTAAGVYCNLYTGQERREIPFATHGAATVEMASVVDDFDVVVIDEIQMIEDQERGFAWT 125
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-VPLNV------PLG 232
RALLG A E+H+CG A ++++I + GDD ++++Y+R + L V + +
Sbjct: 126 RALLGSRAKEIHVCGGLEAKEIVERIAKACGDDFELRTYKRFAELKVSVQCLAKSLKDVN 185
Query: 233 SFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEF 292
S+ N+Q GDCIV FSR+ I+ +K+ IE+ + C ++YGSLPPETR+ QA RFN+ +S +
Sbjct: 186 SYKNVQAGDCIVAFSRNDIFAIKREIETATSYKCCVIYGSLPPETRSEQARRFNNPNSGY 245
Query: 293 DVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV 352
D+LVASDAI MGLNL+I RIIF++M K DG + L VKQI+GRAGR S +P GEV
Sbjct: 246 DILVASDAIAMGLNLSIRRIIFNSMYKHDGTGIVRLGHSAVKQISGRAGRRNSLYPFGEV 305
Query: 353 T 353
+
Sbjct: 306 S 306
>gi|330932356|ref|XP_003303742.1| hypothetical protein PTT_16084 [Pyrenophora teres f. teres 0-1]
gi|311320053|gb|EFQ88169.1| hypothetical protein PTT_16084 [Pyrenophora teres f. teres 0-1]
Length = 766
Score = 303 bits (777), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 173/448 (38%), Positives = 253/448 (56%), Gaps = 44/448 (9%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DL P WYP R+ R V +HVGPTNSGKT+ AL RLE SGIY GPLRLLA EV R
Sbjct: 168 DLRYPAEWYPATREIQRTVHMHVGPTNSGKTYHALKRLEEVDSGIYLGPLRLLAHEVYTR 227
Query: 121 LNKANVSCDLITGQEREEVDGAKHR--AVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSF 178
LN C LITG+E+ D + R + TVEMA + + +D AVIDEIQM+ + RG+++
Sbjct: 228 LNAKGKPCALITGEEQRMPDDTRARMFSCTVEMAPLNTLFDVAVIDEIQMISHEDRGWAW 287
Query: 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSNI 237
T+A LG+ A E+HLCG+ VP+++++ + GD V V Y RL+PL P++ L G +
Sbjct: 288 TQAFLGLKAREIHLCGEARTVPIMRELCALVGDKVHVHEYNRLTPLQPMDRSLNGKLELL 347
Query: 238 QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 297
+ GDCIV+FS I+ L++ IE + C+IVYGSLPPETR +QA FND +++D LVA
Sbjct: 348 EKGDCIVSFSVLGIHALRRLIERKTGKKCAIVYGSLPPETRAQQARLFNDPDNDYDYLVA 407
Query: 298 SDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS------------ 345
SDAIGMGLNL I R+IF + K +G +++ L + E+KQIAGRAGRY +
Sbjct: 408 SDAIGMGLNLAIKRVIFESTAKSNGEQIKRLQISEIKQIAGRAGRYKTAHQAITKDSEKA 467
Query: 346 ---------------KFP------------VGEVTCLDSEDLPLLHKSLLEPSPMLESAG 378
K P +G T L+ EDL L + ++ SAG
Sbjct: 468 SVADTTIDPVIGLDDKQPDTEKAVQAEPQTIGWATTLEREDLASLKFGMKSEPEVITSAG 527
Query: 379 LFPNFDLIYMYSRLHPDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVATVIDQLP-LR 436
+FP ++ ++ P + + + L+ ++++ + ++ L +A + + L
Sbjct: 528 IFPPSVIVERFASYFPPGTPFSYIMMRLQTISEINPRFHLCALKDQLAIADNLHLVENLS 587
Query: 437 LHEKYLFCISPVDMNDDISSQGLTQFAT 464
+ ++ C +PV ++ L + AT
Sbjct: 588 IQDRITLCAAPVSARKANETKFLKELAT 615
>gi|448513963|ref|XP_003867030.1| Suv3 protein [Candida orthopsilosis Co 90-125]
gi|380351368|emb|CCG21592.1| Suv3 protein [Candida orthopsilosis Co 90-125]
Length = 718
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 177/403 (43%), Positives = 244/403 (60%), Gaps = 37/403 (9%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D + P W+P ARK RK+I+HVGPTNSGKT+ +L +L +G Y GPLRLLA E+ +R
Sbjct: 205 DFSNPAQWFPEARKMKRKIIMHVGPTNSGKTYHSLQKLSKVKTGYYAGPLRLLAREIYER 264
Query: 121 LNKANVSCDLITGQ-------EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKT 173
N + C+LITG+ E V G + T+EM + D VIDEIQM+G
Sbjct: 265 FNNQGIGCNLITGEEVIPSIDEYGRVSGLA--SGTIEMIPLHKKMDLCVIDEIQMIGDAQ 322
Query: 174 RGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS 233
RG +T A+LG+ A+E+HLCG+ +AVPLI++++++TGD++ V+ ++RL L P S
Sbjct: 323 RGSVWTNAVLGVLAHEIHLCGEESAVPLIEKLVKITGDELVVKKFDRLGKLTMEKKP-TS 381
Query: 234 FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293
++ GDC+V FS+ I K +IE K ++YG+LPPE R ++A RFN S E+D
Sbjct: 382 LKTLKKGDCLVVFSKRKILEYKCSIEQETKLKVGMIYGALPPEIRAQEAVRFN--SGEYD 439
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY----GSKFPV 349
VLVASDAIGMGLNL I+RI+FS + KF+G E+ +LT +VKQIAGRAGR+ GSK
Sbjct: 440 VLVASDAIGMGLNLKINRIVFSGINKFNGSEVENLTTSQVKQIAGRAGRFSAEHGSK--E 497
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY--SRLHPDSSLYGILEHFLE 407
G VT L L + + L P LE A L+P L++ Y + +S L L HF+
Sbjct: 498 GLVTALQRSSLLYIKECLETPIVELEKACLWPT-GLVWKYYMTNYSTESPLSETLSHFI- 555
Query: 408 NAKL---SENYFFANCE------------EVLKVATVIDQLPL 435
N+ L SE YF A+ E ++LK T+ DQL L
Sbjct: 556 NSTLNFKSELYFLADLEVKTGILEIISKDKLLKNMTIDDQLTL 598
>gi|320581988|gb|EFW96207.1| ATP-dependent RNA helicase, component of the mitochondrial
degradosome along with the RNase Dss1p [Ogataea
parapolymorpha DL-1]
Length = 690
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 163/398 (40%), Positives = 247/398 (62%), Gaps = 18/398 (4%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
+L P+ WYP ARK RK+I+HVGPTNSGKT+ AL RLE+SS G Y GPLRLLA EV ++
Sbjct: 121 NLDNPYAWYPEARKLKRKIIMHVGPTNSGKTYNALKRLETSSKGYYAGPLRLLAREVFEK 180
Query: 121 LNKANVSCDLITGQEREEVDGAKH------RAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
+ C+L+TG+E +D K+ + T+EM + +D V+DEIQM+G R
Sbjct: 181 FQNKGIRCNLMTGEE-VLLDSDKYGNKAGLTSGTIEMIPMSEPFDVVVVDEIQMIGDPFR 239
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G ++T +LG A E+HLCG+ +AVPL+++++ +TGDD+++ +Y RL L ++ S
Sbjct: 240 GSAWTNVILGARAKEIHLCGEVSAVPLVEKLVAMTGDDIEINNYNRLGKLA-VDSEAISL 298
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
+Q GDCIV FS+ I +K IE C+++YG+LPPETR+++A FND E+DV
Sbjct: 299 DEVQRGDCIVAFSKKQILTIKAQIERDTNLKCAVIYGALPPETRSQEARMFNDG--EYDV 356
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 354
+VASDAIGMGLNL I+R++F+T++K+DG + L+ +KQI GRAGR+G VG +T
Sbjct: 357 VVASDAIGMGLNLKINRVVFTTLEKYDGRRMTALSNSSIKQIGGRAGRFGIGEGVGHITA 416
Query: 355 LDSEDLPLLHKSLLEPSPMLESAGLFP-NFDLIYMYSRLHPDSSLYGILEHFLENAKLSE 413
L DL + + P L+ A L+P + ++ YS ++ L + F A L +
Sbjct: 417 LTEADLNKIRVVMQAPIEYLDKAVLWPSDPQWMHYYSMFPKNTKLITMFRKF--EADLDK 474
Query: 414 NYFFANCEEVLKVATVIDQLPLR--LHEKYL---FCIS 446
+ E + ++ + DQ+ + ++E++L F IS
Sbjct: 475 SMRTNPKESIFRIQHMDDQMSMAKFINERHLEDDFAIS 512
>gi|345570647|gb|EGX53468.1| hypothetical protein AOL_s00006g334 [Arthrobotrys oligospora ATCC
24927]
Length = 821
Score = 303 bits (775), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 155/318 (48%), Positives = 209/318 (65%), Gaps = 8/318 (2%)
Query: 36 GAFASVDV------IIRSY-CSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNS 88
G +++DV I++ Y S + + + + P WYP R R LHVGPTNS
Sbjct: 173 GGISALDVALMDTFIMQKYDTSNCVSAQRNLANFSHPAEWYPKTRTMKRTWHLHVGPTNS 232
Query: 89 GKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVT 148
GKT+ AL +LE + GIYCGPLRLLA EV RLN + C+L TG+E+ + A T
Sbjct: 233 GKTYNALKKLEEAKKGIYCGPLRLLAHEVYSRLNAKGIKCNLRTGEEKRATEDVTLWAAT 292
Query: 149 VEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV 208
VEMA + + D AVIDEIQML RG+++T+A+LG+ A ELHLCG+ AV +++++ ++
Sbjct: 293 VEMAQLETQLDVAVIDEIQMLSDPERGWAWTQAVLGLMAKELHLCGEERAVGIVEKLARL 352
Query: 209 TGDDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCS 267
GDD+ + Y+RL L +N L G FS I+ GDCIV FSR I+ LK+ +E C+
Sbjct: 353 CGDDLVIHRYQRLGKLQVMNESLNGDFSKIEKGDCIVGFSRKDIHTLKRFVEQVTGLKCA 412
Query: 268 IVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRD 327
IVYG+LP ETR QA FND + +DVLVASDAIG+GLNL+I R+IFSTM KF+G E +
Sbjct: 413 IVYGALPAETRATQAKYFNDPKNNYDVLVASDAIGLGLNLSIKRVIFSTMFKFNGQENVE 472
Query: 328 LTVPEVKQIAGRAGRYGS 345
+++P +QIAGRAGRY S
Sbjct: 473 ISIPLTRQIAGRAGRYRS 490
>gi|344302882|gb|EGW33156.1| hypothetical protein SPAPADRAFT_71052 [Spathaspora passalidarum
NRRL Y-27907]
Length = 693
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 156/328 (47%), Positives = 220/328 (67%), Gaps = 10/328 (3%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D + P WYP ARK RK+++HVGPTNSGKT+ +L +LE + SG Y GPLRLLA E+ ++
Sbjct: 178 DFSNPSEWYPNARKMKRKIVMHVGPTNSGKTYHSLLKLEKARSGYYAGPLRLLAREIFEK 237
Query: 121 LNKANVSCDLITGQE---REEVDG--AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ VSC+L+TG+E + +G ++ A TVEM + D VIDEIQM+G RG
Sbjct: 238 FQQRGVSCNLVTGEEIIPSYDDNGVISEISAGTVEMIPLNKKMDICVIDEIQMIGDHQRG 297
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
++T ALLG+ A E+HLCG+ +AV L+++I+ VTGD+++++ ++R L N + SF+
Sbjct: 298 AAWTNALLGVLAKEIHLCGEESAVQLVKKIVAVTGDELEIKRFKRFGKLTVQN-RITSFT 356
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
++ GDC+V FS+ I LK IE + IVYGSLPPE R+++A FN+ E+DVL
Sbjct: 357 TLKKGDCVVAFSKKKILDLKNQIEQNTRLKVGIVYGSLPPEIRSKEAQSFNNG--EYDVL 414
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK--FPVGEVT 353
VASDAIGMGLNL I RI+F ++KKF+G +L+ L+ +VKQIAGRAGRY +K G VT
Sbjct: 415 VASDAIGMGLNLKIKRIVFQSVKKFNGKDLQGLSDSQVKQIAGRAGRYFAKDGMQEGFVT 474
Query: 354 CLDSEDLPLLHKSLLEPSPMLESAGLFP 381
LD L + ++ +P LE A L+P
Sbjct: 475 ALDMPTLKYVRNAMAKPVVQLEKAALWP 502
>gi|164662192|ref|XP_001732218.1| hypothetical protein MGL_0811 [Malassezia globosa CBS 7966]
gi|159106120|gb|EDP45004.1| hypothetical protein MGL_0811 [Malassezia globosa CBS 7966]
Length = 587
Score = 302 bits (773), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 184/466 (39%), Positives = 268/466 (57%), Gaps = 38/466 (8%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
TDL P Y AR R++ LHVGPTNSGKTH AL L + +G+Y GPLRLLA EV
Sbjct: 9 ITDLRAPSLTYSSARSLTRQIHLHVGPTNSGKTHGALVTLSKARTGLYAGPLRLLAHEVW 68
Query: 119 KRLNKANVS-------CDLITGQEREEVDG-AKHRAVTVEMADVVSDYDCAVIDEIQMLG 170
+R+N+ +S C+L TG+E VD A + TVEMADV Y+ AVIDEIQM+
Sbjct: 69 ERMNQGTISPSIQPRACNLRTGEEVRVVDEYAGLVSCTVEMADVTRAYEVAVIDEIQMIA 128
Query: 171 CKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVP 230
RGF++T+A+LG+ A ELHLCG+ +AVPLIQ+++++ GD++ + +Y RLSPL +
Sbjct: 129 DIQRGFAWTQAVLGLPAKELHLCGEASAVPLIQRLVEMCGDELHIHNYNRLSPLHVASSS 188
Query: 231 L-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDAS 289
L G + ++ GDC+V FSR I+ LK+ IE+R C++ YG+LPPE ++ QA FN S
Sbjct: 189 LRGDLTKVEPGDCVVAFSRSTIFWLKEQIEARTGLQCAVAYGALPPEIKSEQAKLFN--S 246
Query: 290 SEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS---- 345
+ DV+VASDAIGMGLNL I R+IF T+ K++G E L++ ++KQIAGRAGRYG+
Sbjct: 247 GKLDVMVASDAIGMGLNLRIRRVIFDTLSKWNGKEQVPLSLSQIKQIAGRAGRYGTSRDK 306
Query: 346 -KFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHP---------- 394
+ P G V + ++ L +L P + A + P+ + + L P
Sbjct: 307 NEEPSGLVLTRNENEMEYLRAALAAPVRPITHAQIQPSTRKLESLALLLPRARTRGPSSS 366
Query: 395 -------DSSLYGILEHFLENAKLSENYF-FANCEEVLKVATVIDQL---PLRLHEKYLF 443
D+S+ +LE F A L F A+ ++T+I+ L EK +
Sbjct: 367 RRRVSIHDNSVSTLLEEFHAFADLDAGVFSMADFVSQKAMSTIIEHRGRDRLTHAEKEKW 426
Query: 444 CISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGLGSLRVAE 489
+PV+M D+ + + Y++ +V+ E LG++ E
Sbjct: 427 SNTPVNMRDERAVAWVGNAIERYARGELVRF-EACAKELGTMEAEE 471
>gi|45200857|ref|NP_986427.1| AGL240Wp [Ashbya gossypii ATCC 10895]
gi|44985555|gb|AAS54251.1| AGL240Wp [Ashbya gossypii ATCC 10895]
gi|374109672|gb|AEY98577.1| FAGL240Wp [Ashbya gossypii FDAG1]
Length = 708
Score = 301 bits (772), Expect = 4e-79, Method: Compositional matrix adjust.
Identities = 167/388 (43%), Positives = 241/388 (62%), Gaps = 19/388 (4%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D++ P W+P ARK R +++H+GPTNSGKT+ AL +L+ G Y GPLRLLA E+ R
Sbjct: 202 DISNPAEWFPEARKLRRTIVVHLGPTNSGKTYHALEKLKKCDRGYYAGPLRLLAREIYDR 261
Query: 121 LNKANVSCDLITGQER-EEVDGAKHRA----VTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
K N+ C+L+TG+E ++D +RA TVEM + +D V+DEIQML + RG
Sbjct: 262 FQKDNIRCNLLTGEEVINDLDTLGNRAGLTSGTVEMVPLNQYFDMVVLDEIQMLADEQRG 321
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS-F 234
+++T ALLG+ A+ELHLCG+P+ +P IQ+++ +TGD + + Y+RL L + PL F
Sbjct: 322 WAWTNALLGVQASELHLCGEPSVLPFIQRLVAMTGDKLVINEYQRLGKLEVESKPLPERF 381
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
++ GDC+V+FS+ LK IE K +++YGSLPPETR QAT FN E D+
Sbjct: 382 HGLKKGDCLVSFSKRKTLDLKLQIERAKKCKVAVIYGSLPPETRVHQATMFN--RGEADI 439
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY--------GSK 346
LVASDAIGMGLNL+I R+IF++ K++G EL LT + KQIAGRAGRY +
Sbjct: 440 LVASDAIGMGLNLSIKRVIFTSAMKWNGAELIPLTDSQTKQIAGRAGRYKVAGESDDAAG 499
Query: 347 FPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLF-PNFDLIYMYSRLHPDSSLYGILEHF 405
VG+VT LD E L ++ S+ P + SA L+ P+ L + ++ P + +LEHF
Sbjct: 500 GSVGKVTALDMETLEMIQNSMKAPVKYIPSAVLWPPDRILAQILTKYPPGMKITTLLEHF 559
Query: 406 LENAKLSENYFF--ANCEEVLKVATVID 431
+ K + + F N E ++V +I+
Sbjct: 560 DRDIKSNPDSLFILPNIESRIEVMNLIE 587
>gi|448089344|ref|XP_004196783.1| Piso0_004008 [Millerozyma farinosa CBS 7064]
gi|448093613|ref|XP_004197814.1| Piso0_004008 [Millerozyma farinosa CBS 7064]
gi|359378205|emb|CCE84464.1| Piso0_004008 [Millerozyma farinosa CBS 7064]
gi|359379236|emb|CCE83433.1| Piso0_004008 [Millerozyma farinosa CBS 7064]
Length = 739
Score = 301 bits (771), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 171/410 (41%), Positives = 243/410 (59%), Gaps = 24/410 (5%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DL+ P W+P AR+ RK+I+HVGPTNSGKT+ +L +L + SG Y GPLRLLA E+ +R
Sbjct: 208 DLSNPAEWFPEARRMKRKLIMHVGPTNSGKTYNSLQKLAKAKSGYYAGPLRLLAREIYER 267
Query: 121 LNKANVSCDLITGQE-----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
N + C+LITG+E E ++ + T+EM + D +IDEIQM+ RG
Sbjct: 268 FNAQGIKCNLITGEEVVPSMDEFGKVSEISSGTIEMIPLHKKMDICIIDEIQMIADTRRG 327
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
++T A+LG+ A E+H+CG+ +AV LI ++ ++TGD++++ Y+RL L +N P+ S
Sbjct: 328 EAWTNAVLGVQAREIHMCGEESAVSLISKLAEMTGDEIEIHRYKRLGKLSLMNKPINSLG 387
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N+ GDC++ FS+ I LK IE ++YG+LPPE R+++A FN ++DVL
Sbjct: 388 NLMKGDCVIAFSKRKILELKCEIEKTTNLKVGVIYGALPPEIRSKEAYSFN--VGDYDVL 445
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG--SKFPVGEVT 353
VASDA+GMGLNL I RI+F KKF+G E LT+ EVKQIAGRAGRY G VT
Sbjct: 446 VASDAVGMGLNLKIKRIVFFATKKFNGSETIPLTISEVKQIAGRAGRYSEIEGESEGFVT 505
Query: 354 CLDSEDLPLLHKSLLEPSPMLESAGLFP-NFDLIYMYSRLHPDSSLYGILEHF-LENAKL 411
+ DL L K + +P L+ A ++P N Y S+ +S Y IL F EN L
Sbjct: 506 AIYKRDLDYLKKVMNKPISDLKKACVWPTNKVWTYYMSKFPKHTSFYSILSSFEKENDNL 565
Query: 412 -SENYFFANCE---EVLKV---------ATVIDQLPLRLHEKYLFCISPV 448
+NYF + + E+LK+ T+ DQL L L + SP+
Sbjct: 566 VMDNYFLTSLDARYEILKLFLRNDLYKRTTIDDQLRLSLAPINISVASPL 615
>gi|354546901|emb|CCE43633.1| hypothetical protein CPAR2_212770 [Candida parapsilosis]
Length = 716
Score = 300 bits (769), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 172/402 (42%), Positives = 242/402 (60%), Gaps = 35/402 (8%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D + P W+P ARK RK+++HVGPTNSGKTH +L +L + +G Y GPLRLLA E+ +R
Sbjct: 203 DFSNPAQWFPEARKMKRKIVMHVGPTNSGKTHHSLQKLSTVRTGYYAGPLRLLAREIYER 262
Query: 121 LNKANVSCDLITGQ-------EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKT 173
N + C+LITG+ E V G + T+EM + D VIDEIQM+G
Sbjct: 263 FNDQGIGCNLITGEEVIPSIDEYGRVSGLA--SGTIEMIPLHKKMDLCVIDEIQMIGDAQ 320
Query: 174 RGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS 233
RG +T A+LG+ A+E+HLCG+ +AVPLI++++++TGD+++V+ ++RL L P S
Sbjct: 321 RGSVWTNAVLGVLAHEIHLCGEESAVPLIEKLVEITGDELEVKKFDRLGKLTMEKKP-TS 379
Query: 234 FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293
++ GDC+V FS+ I K IE K ++YG+LPPE R ++A RFN+ E+D
Sbjct: 380 LKTLKKGDCLVVFSKRKILEYKCRIEQETKLKVGMIYGALPPEIRAQEAARFNNG--EYD 437
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY----GSKFPV 349
VLVASDAIGMGLNL I+RI+FS + KF+G E+ +LT +VKQIAGRAGR+ GS+
Sbjct: 438 VLVASDAIGMGLNLKINRIVFSGINKFNGSEVENLTTSQVKQIAGRAGRFSVEHGSR--E 495
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY--SRLHPDSSLYGILEHFLE 407
G VT L L + + L P LE A L+P DL++ Y + S L L F+
Sbjct: 496 GLVTALQRSSLLYIKECLESPIAELEKACLWPT-DLVWKYYMTNYSTTSPLSETLSRFIS 554
Query: 408 NAK--LSENYFFANCE------------EVLKVATVIDQLPL 435
+ S+ YF A+ E ++LK T+ DQL L
Sbjct: 555 STSNFKSDLYFLADLEVKTGILDIISKDKLLKNMTIDDQLTL 596
>gi|367006372|ref|XP_003687917.1| hypothetical protein TPHA_0L01260 [Tetrapisispora phaffii CBS 4417]
gi|357526223|emb|CCE65483.1| hypothetical protein TPHA_0L01260 [Tetrapisispora phaffii CBS 4417]
Length = 739
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 155/351 (44%), Positives = 225/351 (64%), Gaps = 14/351 (3%)
Query: 65 PHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKA 124
P W+P ARK R +I+H+GPTNSGKT++AL +L+S+ G Y GPLRLLA EV R
Sbjct: 223 PAEWFPEARKMRRNIIMHLGPTNSGKTYRALQKLKSAEVGYYAGPLRLLAREVYDRFKTE 282
Query: 125 NVSCDLITGQE-----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
+ C+L+TG+E E A + T+EM + +D V+DEIQML RG+++T
Sbjct: 283 GLRCNLLTGEEIIEDLSEIGTPAGITSGTIEMVSMSKTFDVVVLDEIQMLADNDRGWAWT 342
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS-FSNIQ 238
ALLG+ A E+HLCG+ +A+P+I++I++ TGD++ V Y+RL L+ P+ + F ++
Sbjct: 343 NALLGVKAKEVHLCGEKSALPVIKKIVESTGDNLIVHEYDRLGNLIVEKSPMNNDFKGLR 402
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
GDC++ FS+ I LK +E K ++YGSLPPETR +QA FN+ E+DVLVAS
Sbjct: 403 KGDCVIAFSKKKILDLKLTVERETKLKVGVIYGSLPPETRVQQARLFNNG--EYDVLVAS 460
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY-----GSKFPVGEVT 353
DA+GMGLNL I R+IF+T KF+G EL++LT +KQI GRAGRY ++ +G+VT
Sbjct: 461 DAVGMGLNLAIDRVIFTTDLKFNGKELQELTSSNIKQIGGRAGRYKHNDSSNEVAIGKVT 520
Query: 354 CLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL-IYMYSRLHPDSSLYGILE 403
+ L + K + P +ESA ++P ++ I + +R P +SL ILE
Sbjct: 521 SFHGDVLTTIRKGMEAPIEYIESATIWPTDEICIRLMTRFAPSTSLSDILE 571
>gi|296082899|emb|CBI22200.3| unnamed protein product [Vitis vinifera]
Length = 582
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 138/263 (52%), Positives = 185/263 (70%), Gaps = 1/263 (0%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DLT+PHTW+P AR RK+I H GPTNSGKT+ AL R + GIYC PLRLLA EV +
Sbjct: 206 DLTKPHTWFPFARAMKRKIIYHCGPTNSGKTYNALQRYMEAKKGIYCSPLRLLAMEVFDK 265
Query: 121 LNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTR 180
+N + C L TGQE++ V + H + TVEM YD AVIDEIQM+ RG+++TR
Sbjct: 266 VNALGIYCSLHTGQEKKNVPFSNHTSCTVEMVSTDDIYDVAVIDEIQMMSDPCRGYAWTR 325
Query: 181 ALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-VPLNVPLGSFSNIQT 239
ALLG+ A+E+HLCGDP+ + ++++I TGD++ Q YER PL V LG N+++
Sbjct: 326 ALLGLKADEIHLCGDPSVLNVVRKICSETGDELFEQHYERFKPLVVEAKTLLGELQNVRS 385
Query: 240 GDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD 299
GDC+V FSR I+ +K AIE H C ++YG+LPPETR +QA+ FND +E+DVLVASD
Sbjct: 386 GDCVVAFSRREIFEVKLAIEKHTNHRCCVIYGALPPETRRQQASLFNDPDNEYDVLVASD 445
Query: 300 AIGMGLNLNISRIIFSTMKKFDG 322
A+GMGLNLNI R++F ++ K++G
Sbjct: 446 AVGMGLNLNIRRVVFYSLSKYNG 468
>gi|388578789|gb|EIM19125.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 591
Score = 299 bits (766), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 179/476 (37%), Positives = 266/476 (55%), Gaps = 44/476 (9%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
TD +P Y AR RK+ILHVGPTNSGKTH AL L + +GIY GPLRLLA E+
Sbjct: 33 ITDFRQPSLKYSKARTMRRKLILHVGPTNSGKTHSALLALSRAKTGIYAGPLRLLAHEIF 92
Query: 119 KRLNKANVS-----------------CDLITGQEREEVD-GAKHRAVTVEMADVVSDYDC 160
RLN+ +S C+L TG+E VD + ++ TVEM + + D
Sbjct: 93 LRLNQGTISPGIGTDGKPLPPGPPKTCNLYTGEEVRIVDPESGLKSCTVEMVPLEHEIDV 152
Query: 161 AVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 220
VIDEIQ++ +RG ++T A+LG+ A ELH+CG+ V L+++I + TGD++ V Y+R
Sbjct: 153 GVIDEIQLIADDSRGPAWTAAVLGMRAKELHICGEETVVELLERIAKETGDEIIVNRYKR 212
Query: 221 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 280
L+ L + PL + N++ GDC+VTFSR I+ LK+ IE C++ YG LPPETR
Sbjct: 213 LTEL-RIGKPLSTLKNVRKGDCVVTFSRSGIWALKRKIEDATGLRCAVAYGGLPPETRAE 271
Query: 281 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 340
QA FND S +DV+VASDAIGMGLNL I R++F T+ K++GV+ L++ ++KQIAGRA
Sbjct: 272 QAKLFNDKDSGYDVMVASDAIGMGLNLKIRRVVFETVHKWNGVKEVPLSISQMKQIAGRA 331
Query: 341 GRYG-----------------SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNF 383
GRYG G T L+ DL +L +++ P + A + +
Sbjct: 332 GRYGVNEKENIIETNNAKVEDEDDQSGVATTLNPMDLQILERAISAKIPTINKAAIGIST 391
Query: 384 DLIYMYSRLHPD-SSLYGILEHFLENAKLSENYFFANCEEVLKVATV----IDQLPLRLH 438
D + + L P +SL +++ ++S NYF + + +L++A + + QLP +
Sbjct: 392 DALKDLNNLMPSRASLGDLIKTLTGLLRVSNNYFVTSNQNLLQMAAIANEPLSQLP--ID 449
Query: 439 EKYLFCISPVDMNDDISSQGLTQFA-TNYSKKGIVQLREIFTPGLGSLRVAEFPVG 493
+ Y F ++P + D L +F S + I ++ + GL L+ E +G
Sbjct: 450 DAYRFAMAPCNTRDANVVAALCRFIDAQASGETIEPIKSLEGLGLKELKDVEKVIG 505
>gi|443894136|dbj|GAC71486.1| mitochondrial RNA helicase SUV3 [Pseudozyma antarctica T-34]
Length = 853
Score = 299 bits (765), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 177/456 (38%), Positives = 257/456 (56%), Gaps = 30/456 (6%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DL P YP AR +R + LHVGPTNSGKTH AL L + +G++ GPLRLLA EV R
Sbjct: 273 DLRFPAHQYPHARTLMRSIHLHVGPTNSGKTHGALVALSKARTGVFAGPLRLLAHEVWDR 332
Query: 121 LNKANVS-------CDLITGQEREEVDG-AKHRAVTVEMADVVSDYDCAVIDEIQMLGCK 172
N VS C+L+TG+E+ VD A + TVEM D VIDEIQM+G
Sbjct: 333 FNTGTVSPGVAPRACNLVTGEEQRTVDALAGLVSCTVEMVSNSRTVDVGVIDEIQMIGDA 392
Query: 173 TRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL- 231
RGF++T A+LG+ A ELHLCG+ + +PLI+++ + GD + + YERL+PL + L
Sbjct: 393 QRGFAWTAAVLGLPAKELHLCGEASVIPLIEKLAEACGDHLTIHRYERLTPLSVADESLH 452
Query: 232 GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSE 291
+ I+ GDCIV FSR I+ LK+ IE + C++ YG+LPPET+ QA FN+ +
Sbjct: 453 NDLARIERGDCIVAFSRSGIFALKREIEQKTGLRCAVAYGALPPETKAEQAKLFNEG--K 510
Query: 292 FDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV-- 349
DV+VASDAIGMGLNL I R++F T+ K++G E L+ ++KQIAGRAGRYG++
Sbjct: 511 LDVMVASDAIGMGLNLRIKRVVFDTLTKWNGSEEVTLSASQIKQIAGRAGRYGTQSASTK 570
Query: 350 -----GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRL----HPDSSLYG 400
G VT +L +L +L P + A + P + + S + P L
Sbjct: 571 PADLGGIVTTRHEHELEVLRAALASPLRPITRAAIQPPREALSQLSAMLPSAKPGGGLRA 630
Query: 401 ILEHFLENAKLSE----NYFFANCEEVLKVATVIDQLP---LRLHEKYLFCISPVDMNDD 453
+ + + + A L+ +YF A+ + L ++ +++ L + E+ F +P +M D+
Sbjct: 631 LSQLYADVALLARIEAAHYFVADFSQQLAISPLVESASAGMLTVAERETFSNAPANMRDE 690
Query: 454 ISSQGLTQFATNYSKKGIVQLREIFTPGLGSLRVAE 489
LT +S+ G+V+ + LG L V E
Sbjct: 691 RVVAFLTSAVAQFSRGGLVRF-DAAADALGMLEVEE 725
>gi|50293791|ref|XP_449307.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528620|emb|CAG62281.1| unnamed protein product [Candida glabrata]
Length = 724
Score = 298 bits (764), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 154/374 (41%), Positives = 234/374 (62%), Gaps = 15/374 (4%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D + P W+P ARK R +I+HVGPTNSGKT ++L +L+++ G Y GPLRLLA EV ++
Sbjct: 209 DFSNPAEWFPEARKIRRHIIMHVGPTNSGKTFRSLQKLKAADRGYYAGPLRLLAREVYEK 268
Query: 121 LNKANVSCDLITGQE-----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
NV C+L+TG+E E + A + T+EM + ++D V+DEIQM+ RG
Sbjct: 269 FKHENVRCNLLTGEEVIKDLDEMGNEANLTSGTIEMIPLNQNFDVVVLDEIQMMADLDRG 328
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS-F 234
+++T ALLG A E+H CG+ + +PLI++I+++TGD + + YER+ LV L +
Sbjct: 329 WAWTNALLGAKAKEVHCCGEASTIPLIKKIVEMTGDKLTINEYERMGKLVVEEEALTKGY 388
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
+++ GDC+V FS+ AI LK IE + + +++YGSLPPETR +QA FN S EFD+
Sbjct: 389 HSLKKGDCVVAFSKKAILDLKLEIEKKTELKAAVIYGSLPPETRVKQANLFN--SGEFDI 446
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY------GSKFP 348
L+ASDAIGMGLNL+I R++F+T KKFDG ++ D+T +KQI GRAGR+ + P
Sbjct: 447 LIASDAIGMGLNLSIDRVVFTTSKKFDGRDMVDMTSSAIKQIGGRAGRFKQNIHDNGELP 506
Query: 349 VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL-IYMYSRLHPDSSLYGILEHFLE 407
VG +T + L + +++ P L SA +P ++ ++ +R P ++ +LE
Sbjct: 507 VGYITAVKPNVLKAVREAINAPIEYLTSATTWPTDEICTHVMTRFMPGTTCKTLLETIAA 566
Query: 408 NAKLSENYFFANCE 421
+ + S N F C+
Sbjct: 567 DIEQSSNKLFQICD 580
>gi|452979093|gb|EME78856.1| hypothetical protein MYCFIDRAFT_60464 [Pseudocercospora fijiensis
CIRAD86]
Length = 918
Score = 297 bits (760), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 171/438 (39%), Positives = 245/438 (55%), Gaps = 44/438 (10%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
D DL P W+P R R + LHVGPTNSGKT+ AL RLE + SG+Y GPLRLLA EV
Sbjct: 236 DIADLRYPSEWFPATRAVQRTIHLHVGPTNSGKTYHALQRLEQAESGVYAGPLRLLAHEV 295
Query: 118 AKRLNKANVSCDLITGQERE------EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGC 171
RLN C LITG+ER + A TVEM + D AVIDEIQM+G
Sbjct: 296 YARLNAKGRQCALITGEERRAPTDTPDASSFDMTACTVEMTPLNCCMDVAVIDEIQMIGN 355
Query: 172 KTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL 231
RG+++T+ALLG+ A E+HLCG+ VPLI++I GD +++ YERLSPL + L
Sbjct: 356 SHRGWAWTQALLGVMAKEVHLCGEERTVPLIKEICASVGDPLEIHRYERLSPLQMSDKSL 415
Query: 232 -GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASS 290
G ++ GDC+++FS I+ L+K IE + VYGSLPPETR +QA FND ++
Sbjct: 416 DGKLKELRKGDCVISFSVMGIHALRKQIEKSTGRKVATVYGSLPPETRAQQARLFNDPNN 475
Query: 291 EFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY------- 343
++D LVASDA+GMGLNL I RI+F + KF+G + L++ ++KQI GRAGR+
Sbjct: 476 DYDFLVASDAVGMGLNLAIKRIVFESSSKFNGYQRETLSIADIKQIGGRAGRFRTSAQAA 535
Query: 344 -------------GSKFP-------------VGEVTCLDSEDLPLLHKSL-LEPSPMLES 376
G P VG VT L+ D P++ ++ EP P ++S
Sbjct: 536 EAPASEADLAAAKGEPRPDQEMLDADDTPENVGLVTTLERFDFPIIRTAMGSEPEP-IKS 594
Query: 377 AGLFPNFDLIYMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLP- 434
AG+FP ++ ++ P + + IL E +++ + ++ + +A +I+ +
Sbjct: 595 AGIFPPAPVLERFAGYFPPGTPFSYILARLHELSQMHPRFHLCGLKDQVWIADLIEGIEG 654
Query: 435 LRLHEKYLFCISPVDMND 452
L + +K + P + D
Sbjct: 655 LSIADKNILTSCPANKGD 672
>gi|190345490|gb|EDK37387.2| hypothetical protein PGUG_01485 [Meyerozyma guilliermondii ATCC
6260]
Length = 566
Score = 296 bits (759), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 159/368 (43%), Positives = 226/368 (61%), Gaps = 11/368 (2%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DL+ P +W+P ARK RK++LHVGPTNSGKT+ +L L S SG Y GPLRLLA E+ +R
Sbjct: 52 DLSSPASWFPEARKMKRKLVLHVGPTNSGKTYNSLQELAKSKSGYYAGPLRLLAREIYER 111
Query: 121 LNKANVSCDLITGQER----EEVDGAKH-RAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
N+ + C+LITG+E +EV + T+EM + D VIDEIQM+ RG
Sbjct: 112 FNQQGIRCNLITGEEVVPSIDEVGKVSDISSGTIEMIPLHKPMDTCVIDEIQMIADDRRG 171
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
++T A+LG+ A +H+CG+ +AVPLI+++ +TGD++++++YERL L L S
Sbjct: 172 SAWTGAVLGVQAKVIHMCGEQSAVPLIKKLANITGDELEIKTYERLGKLTVAQKELHSLK 231
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
+ GDC++ FS+ I LK IE K ++YG+LPPE R+++A FN S ++D+L
Sbjct: 232 KLAKGDCVIAFSKRKILELKCEIEKMTKFRVGVIYGALPPEIRSKEANGFN--SGQYDIL 289
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY--GSKFPVGEVT 353
VASDA+GMGLNL I R++F T KF+G E LT KQIAGRAGR+ G G VT
Sbjct: 290 VASDAVGMGLNLKIKRVVFFTTTKFNGSETVPLTASATKQIAGRAGRFSAGKGQSEGFVT 349
Query: 354 CLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY-SRLHPDSSLYGILEHFL-ENAKL 411
L ++DL + K + EP+ L A ++P + +Y S+ +S Y IL F E A +
Sbjct: 350 ALKAKDLRHVRKMMAEPNQDLVKACIWPTNKIWMLYMSKFPQGTSFYEILSQFAHETADV 409
Query: 412 SENYFFAN 419
+ FF
Sbjct: 410 KMSDFFVT 417
>gi|426200746|gb|EKV50670.1| hypothetical protein AGABI2DRAFT_200532 [Agaricus bisporus var.
bisporus H97]
Length = 525
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 172/383 (44%), Positives = 234/383 (61%), Gaps = 32/383 (8%)
Query: 64 RPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN- 122
RP +P R+ RKVI+HVGPTNSGKTH AL L ++ +G+Y GPLRLLA E+ +RLN
Sbjct: 97 RPAEEFPFTRRIQRKVIMHVGPTNSGKTHHALRALAAAKTGVYAGPLRLLAHEIWERLNL 156
Query: 123 --------KANVSCDLITGQEREEVDG-AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKT 173
K + ++ITG+E++ V+ A + TVEM +YD VIDEIQM+G
Sbjct: 157 DSRPSTNSKYARATNMITGEEKKVVEHYAGLLSCTVEMLSFRMEYDVGVIDEIQMIGDPQ 216
Query: 174 RGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS 233
RGF++T A+LG+ A ELHLCG+ +A+P++Q +LQ TGDD++++ YERL+PL+ LG
Sbjct: 217 RGFAWTSAVLGLSARELHLCGEASAIPIVQSLLQETGDDLEIRQYERLTPLLVEEESLGG 276
Query: 234 -FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEF 292
S +Q GDC++ FSR +I+ LK IE + C++VYG LPPE R+ QA FND S F
Sbjct: 277 DLSKVQKGDCVIAFSRTSIFALKTEIEKKSGLKCAVVYGKLPPEIRSEQAALFNDPDSGF 336
Query: 293 DVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRD--LTVPEVKQIAGRAGRYGSKF--- 347
DV++ SDAIGMGLNL I RIIFS + K DG L++ + KQIAGRAGRYG
Sbjct: 337 DVIIGSDAIGMGLNLKIRRIIFSAVTKGDGASSSKVPLSISQTKQIAGRAGRYGHSIDPS 396
Query: 348 -PVGEVTCLDSEDLPLLHKSLLEPS-PMLESAGLFPNFDLIYMY-------------SRL 392
G VT L +DLP + +L PS P L A + P + + + + L
Sbjct: 397 NSCGYVTTLHPKDLPFVKDALSHPSTPTLSHAYVGPTVESMEAFCAALPVSKSHSQHNSL 456
Query: 393 HPDSSLYGILEHFLENAKLSENY 415
P SS L FLE+ +++ Y
Sbjct: 457 FPTSSGTN-LTSFLESIQMAHVY 478
>gi|409077774|gb|EKM78139.1| hypothetical protein AGABI1DRAFT_76572, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 439
Score = 296 bits (757), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 163/339 (48%), Positives = 218/339 (64%), Gaps = 18/339 (5%)
Query: 64 RPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN- 122
RP +P R+ RKVI+HVGPTNSGKTH AL L ++ +G+Y GPLRLLA E+ +RLN
Sbjct: 97 RPAEEFPFTRRIQRKVIMHVGPTNSGKTHHALRALAAAKTGVYAGPLRLLAHEIWERLNL 156
Query: 123 --------KANVSCDLITGQEREEVDG-AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKT 173
K + ++ITG+E++ V+ A + TVEM +YD VIDEIQM+G
Sbjct: 157 DSRPSTNSKYARATNMITGEEKKVVEHYAGLLSCTVEMLSSRMEYDVGVIDEIQMIGDPQ 216
Query: 174 RGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS 233
RGF++T A+LG+ A ELHLCG+ +A+P++Q +LQ TGDD++++ YERL+PL+ LG
Sbjct: 217 RGFAWTSAVLGLSARELHLCGEASAIPIVQSLLQETGDDLEIRQYERLTPLLVEEESLGG 276
Query: 234 -FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEF 292
S +Q GDC++ FSR +I+ LK IE + C++VYG LPPE R+ QA FND S F
Sbjct: 277 DLSKVQKGDCVIAFSRTSIFALKTEIEKKSGLKCAVVYGKLPPEIRSEQAALFNDPDSGF 336
Query: 293 DVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRD--LTVPEVKQIAGRAGRYGSKF--- 347
DV++ SDAIGMGLNL I RIIFS + K DG L++ + KQIAGRAGRYG
Sbjct: 337 DVIIGSDAIGMGLNLKIRRIIFSAVTKGDGASSSKIPLSISQTKQIAGRAGRYGHSIDPS 396
Query: 348 -PVGEVTCLDSEDLPLLHKSLLEPS-PMLESAGLFPNFD 384
G VT L +DLP + +L PS P L A + P +
Sbjct: 397 NSCGYVTTLHPKDLPFVKDALSHPSTPTLSHAYVGPTVE 435
>gi|328864082|gb|EGG13181.1| hypothetical protein MELLADRAFT_32543 [Melampsora larici-populina
98AG31]
Length = 609
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 176/453 (38%), Positives = 251/453 (55%), Gaps = 34/453 (7%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D+ RP YP AR+ R++ LHVGPTNSGKTH AL L + +G+Y GPLRLLA EV R
Sbjct: 53 DMRRPQDKYPDARRYKRQIHLHVGPTNSGKTHSALRALHGAHTGVYAGPLRLLAHEVFTR 112
Query: 121 LNKANV-------SCDLITGQEREEVD-GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCK 172
+NK + +C+L+TG+E+ V+ A + TVEM YD VIDEIQM+G
Sbjct: 113 MNKGQIAHDLAPRACNLVTGEEQRTVEIAAGLVSCTVEMLSPHQYYDVVVIDEIQMIGDI 172
Query: 173 TRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL- 231
RG ++T+A+LG A ELHLCG+ + + LI+++ GD+ + Y+RL+PL L
Sbjct: 173 YRGDAWTQAVLGTQAKELHLCGEESVIELIRKLSIDCGDEFILHEYQRLTPLKVSEQSLK 232
Query: 232 GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFN----- 286
G S IQ GDC+VTFSR+ IY +KK IE + + YG LPPE R R+A FN
Sbjct: 233 GDLSQIQKGDCVVTFSRNNIYAIKKLIEEQTDLRVGMAYGGLPPEVREREARMFNLGSEI 292
Query: 287 DASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG-- 344
+ +DVLV SDAIGMGLNL I R+IF + KFDG L+ ++KQI GRAGR+G
Sbjct: 293 EGEGGYDVLVGSDAIGMGLNLKIKRVIFEALYKFDGQREVTLSTSQIKQIGGRAGRFGIL 352
Query: 345 -SKFP---------------VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYM 388
+K VGEV L ++PLL K ++ P + A + F+ +
Sbjct: 353 PTKVKSESNQSSEGEPITQCVGEVATLQESEMPLLRKCMVAPFEPITQAVIKAPFETVQG 412
Query: 389 YSRLHPDSSLYGILEHFLENAKLSENYF-FANCEEVLKVATVIDQLP-LRLHEKYLFCIS 446
+R+ P + L + ++ F + +A +++ + L L E+ LFC +
Sbjct: 413 LARMVPPGVRFSTLLNLRRTLTVTSPIFAIGDENNAAGIADLLEDITNLSLAERDLFCSA 472
Query: 447 PVDMNDDISSQGLTQFATNYSKKGIVQLREIFT 479
P + ++ L +AT +SK+ + L EI T
Sbjct: 473 PASSRNPVAMTALRSWATAHSKRKLGNLSEIKT 505
>gi|336369621|gb|EGN97962.1| hypothetical protein SERLA73DRAFT_91128 [Serpula lacrymans var.
lacrymans S7.3]
Length = 509
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 164/346 (47%), Positives = 227/346 (65%), Gaps = 9/346 (2%)
Query: 81 LHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANV---SCDLITGQERE 137
+HVGPTNSGKTH AL L ++ +GIY GPLRLLA E+ +RLN + C+LITG+E +
Sbjct: 1 MHVGPTNSGKTHHALRALAAAPTGIYAGPLRLLAHEIWERLNLGQIYARGCNLITGEEVK 60
Query: 138 EVD-GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDP 196
VD A+ + TVEM YD AV+DEIQM+G RGF++T A+LG+ A E+HLCG+
Sbjct: 61 IVDENARLYSCTVEMIKTNMLYDVAVVDEIQMIGDSERGFAWTEAVLGLNAREIHLCGEE 120
Query: 197 AAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLG-SFSNIQTGDCIVTFSRHAIYRLK 255
AVPL++ +L+ T DD+ V YERL+PL LG + S I+ GDCIVTFSR +I+++K
Sbjct: 121 TAVPLVEAMLRETNDDLVVNRYERLTPLEVEKQSLGGNLSKIRKGDCIVTFSRRSIFQMK 180
Query: 256 KAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFS 315
+ +E C+ VYG LPPE R+ QA FNDA++ FD+L+ SDAIGMGLNL I RII +
Sbjct: 181 RDVEKTMGVTCATVYGRLPPEVRSEQADLFNDANNGFDILIGSDAIGMGLNLKIRRIIIA 240
Query: 316 TMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSP 372
++K+ ++ L++ KQIAGRAGR+ G + PVG T L+ EDLP L +++ P P
Sbjct: 241 QVRKYHDNHVQYLSISSTKQIAGRAGRFGLHGKESPVGLTTTLNEEDLPFLTRTMKLPIP 300
Query: 373 MLESAGLFP-NFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFF 417
L++A + P N L+ S L P S++ I +KL+ Y +
Sbjct: 301 SLKTARITPSNPSLVATASALPPHSAMNTIFLAHAYTSKLAPTYRY 346
>gi|302680394|ref|XP_003029879.1| hypothetical protein SCHCODRAFT_78341 [Schizophyllum commune H4-8]
gi|300103569|gb|EFI94976.1| hypothetical protein SCHCODRAFT_78341 [Schizophyllum commune H4-8]
Length = 625
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 175/446 (39%), Positives = 249/446 (55%), Gaps = 57/446 (12%)
Query: 64 RPHTW--YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL 121
RP W +P AR RK+I+HVGPTNSGKTH AL L ++ GIY GPLRLLA+E+ +RL
Sbjct: 23 RPFIWEEFPHARHLKRKIIMHVGPTNSGKTHNALRALAAAKLGIYAGPLRLLAYEIWERL 82
Query: 122 NKANV---------------------------------------------SCDLITGQER 136
N + C+++TG+E
Sbjct: 83 NLGQIVPAGMLEPPPRRPGQVAAEELADSALDFGTERPAARRDINPQYARQCNMVTGEEH 142
Query: 137 EEVDG-AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGD 195
+ +D A+ +VT+EM S YD AV+DEIQM+ RG ++T A+LG+ A ELHLCG+
Sbjct: 143 KIIDPYARLSSVTIEMLSFQSSYDVAVVDEIQMIADDQRGCAWTNAVLGLAAKELHLCGE 202
Query: 196 PAAVPLIQQILQVTGDDVKVQSYERLSPL-VPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
A+PL+Q+++ TGD++ + YERL+PL V G FS I+ GDC+V FSR I+++
Sbjct: 203 DTAIPLVQELIAQTGDELVINRYERLTPLEVEKESLKGDFSKIRKGDCVVCFSRQKIFQV 262
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
K+ IE C++VYG LPPE R+ QAT FND S +DVLV SDAIGMGLNL I R++F
Sbjct: 263 KEEIEKATGLRCAVVYGGLPPEVRSEQATLFNDPDSGYDVLVGSDAIGMGLNLKIGRVVF 322
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPS 371
ST +K DG + L++ + KQIAGRAGRY G PVG VT L +D+ + ++L +
Sbjct: 323 STCQKHDGRKQVALSLSQTKQIAGRAGRYGLHGGDKPVGYVTTLREDDMEHVRQALAAEN 382
Query: 372 PMLESAGLFPNFDLIYMYSRLHPDSSLYGI-LEHFLENAKLSENYFFANCEEVLK-VATV 429
L+ AGL +L P S + + L+ + + + + E++ + +A V
Sbjct: 383 QPLQRAGLNARNELYSAVRAALPRGSKFDLWLDALQYTSTIPSRLRYTDQEQIRRLMADV 442
Query: 430 IDQL---PLRLHEKYLFCISPVDMND 452
ID +RL + F +P+ D
Sbjct: 443 IDMEGTDTMRLVDITTFVAAPIGWRD 468
>gi|426199143|gb|EKV49068.1| hypothetical protein AGABI2DRAFT_201173, partial [Agaricus bisporus
var. bisporus H97]
Length = 439
Score = 295 bits (755), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 162/339 (47%), Positives = 218/339 (64%), Gaps = 18/339 (5%)
Query: 64 RPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN- 122
RP +P R+ RKVI+HVGPTNSGKTH AL L ++ +G+Y GPLRLLA E+ +RLN
Sbjct: 97 RPAEEFPFTRRIQRKVIMHVGPTNSGKTHHALRALAAAKTGVYAGPLRLLAHEIWERLNL 156
Query: 123 --------KANVSCDLITGQEREEVDG-AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKT 173
K + ++ITG+E++ V+ A + T+EM +YD VIDEIQM+G
Sbjct: 157 DSRPSTNSKYARATNMITGEEKKVVEHYAGLLSCTIEMLSSRMEYDVGVIDEIQMIGDPQ 216
Query: 174 RGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS 233
RGF++T A+LG+ A ELHLCG+ +A+P++Q +LQ TGDD++++ YERL+PL+ LG
Sbjct: 217 RGFAWTSAVLGLSARELHLCGEASAIPIVQSLLQETGDDLEIRQYERLTPLLVEEESLGG 276
Query: 234 -FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEF 292
S +Q GDC++ FSR +I+ LK IE + C++VYG LPPE R+ QA FND S F
Sbjct: 277 DLSKVQKGDCVIAFSRTSIFALKTEIEKKSGLKCAVVYGKLPPEIRSEQAALFNDPDSGF 336
Query: 293 DVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRD--LTVPEVKQIAGRAGRYGSKF--- 347
DV++ SDAIGMGLNL I RIIFS + K DG L++ + KQIAGRAGRYG
Sbjct: 337 DVIIGSDAIGMGLNLKIRRIIFSAVTKGDGASSSKVPLSISQTKQIAGRAGRYGHSIDPS 396
Query: 348 -PVGEVTCLDSEDLPLLHKSLLEPS-PMLESAGLFPNFD 384
G VT L +DLP + +L PS P L A + P +
Sbjct: 397 NSCGYVTTLHPKDLPFVKDALSHPSTPTLSHAYVGPTVE 435
>gi|294658399|ref|XP_460737.2| DEHA2F08624p [Debaryomyces hansenii CBS767]
gi|202953098|emb|CAG89077.2| DEHA2F08624p [Debaryomyces hansenii CBS767]
Length = 743
Score = 295 bits (754), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 175/435 (40%), Positives = 250/435 (57%), Gaps = 37/435 (8%)
Query: 43 VIIRSYCSGS--GMKKFD-FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLE 99
+I + Y S +K+ D DL+ P W+P ARK RK I+HVGPTNSGKT+ +L +L
Sbjct: 189 LIYKEYVESSLTHIKQQDSLVDLSNPAEWFPEARKMKRKFIMHVGPTNSGKTYNSLRKLA 248
Query: 100 SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQER-EEVDG----AKHRAVTVEMADV 154
+ SG Y GPLRLLA E+ +R + + C+LITG+E +D ++ + T+EM
Sbjct: 249 KAKSGYYAGPLRLLAREIYERFHDQGIKCNLITGEEVIPSIDSFGKISEISSGTIEMIPS 308
Query: 155 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVK 214
D +IDEIQM+ RG ++T A+LG+ A E+H+CG+ +AVPLI ++ ++TGD+V+
Sbjct: 309 HKKMDICIIDEIQMIADPRRGEAWTNAVLGVQAKEIHMCGEESAVPLILKLAKITGDEVE 368
Query: 215 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 274
+ Y RL L + + +F N+Q GDC++ FS+ I LK IE ++YG+LP
Sbjct: 369 INKYNRLGKLTVSDKEVSNFKNLQKGDCVIAFSKRKILELKCEIERSTNLKVGVIYGALP 428
Query: 275 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 334
PE R+++A FN S ++DVLVASDA+GMGLNL I RI+F KKF+G E LT E K
Sbjct: 429 PEIRSKEANGFN--SGQYDVLVASDAVGMGLNLKIKRIVFFATKKFNGNETIPLTASETK 486
Query: 335 QIAGRAGRYGSKFPVGE--VTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY--S 390
QIAGRAGR+ E VT + +DL L K + EP L A +P D ++ Y S
Sbjct: 487 QIAGRAGRFSKDEGESEGFVTAMYKKDLIFLKKMMNEPIQNLSKACTWPT-DKVWTYYMS 545
Query: 391 RLHPDSSLYGILEHF-LENAKLS-ENYFFANCE------------EVLKVATVIDQLPLR 436
+ +S Y IL F E + L EN+F + ++ K T+ DQL L
Sbjct: 546 KFPKYTSFYDILAQFEKETSSLEMENFFLTALDSRYEILNLFLRNDLYKKTTIEDQLRLS 605
Query: 437 LHEKYLFCISPVDMN 451
L +PV++N
Sbjct: 606 L--------APVNIN 612
>gi|58265860|ref|XP_570086.1| RNA helicase like protein [Cryptococcus neoformans var. neoformans
JEC21]
gi|134110290|ref|XP_776201.1| hypothetical protein CNBD0220 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50258871|gb|EAL21554.1| hypothetical protein CNBD0220 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57226319|gb|AAW42779.1| RNA helicase like protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 828
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 182/455 (40%), Positives = 258/455 (56%), Gaps = 36/455 (7%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
D T LT + P +R R LH+GPTNSGKT+ AL L +++G Y GPLRLLA EV
Sbjct: 200 DLTRLTHSTDFLP-SRAIKRHFHLHIGPTNSGKTYNALKALSMANTGAYAGPLRLLAHEV 258
Query: 118 AKRLNKANV--------SCDLITGQEREEVD-GAKHRAVTVEMADVV----SDYDCAVID 164
+R+N +V C+L+TG+ER V A + TVEM + + +D VID
Sbjct: 259 WERMNLGSVGGLDGKGRECNLLTGEERRVVHPDAGLLSCTVEMLPLAGLSGTGFDVVVID 318
Query: 165 EIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL 224
EIQMLG RG ++T+A+LG+ A E+HLCGD V L++ I+ GDD+ V Y RL+PL
Sbjct: 319 EIQMLGDGQRGGAWTKAVLGVAAKEIHLCGDETTVELLRGIIASLGDDLTVHQYNRLTPL 378
Query: 225 VPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQAT 283
N L ++ ++ GDCIVTFSR I+ +KK +ES+ C++VYG+LPPETR QA
Sbjct: 379 SVANESLKNDYTKVEDGDCIVTFSRSNIFEVKKQVESQAGKKCAVVYGALPPETRAEQAR 438
Query: 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
FND + +LVASDA+GMGLNL I RIIF ++ KF+G L++ ++KQIAGRAGR+
Sbjct: 439 DFNDEAGASKILVASDAVGMGLNLKIRRIIFESLSKFNGKSQVPLSLMQIKQIAGRAGRF 498
Query: 344 GS--------------KFPV--GEVTCLDSEDLPLLHKSLLEPSPMLESAGL-FPNFDLI 386
+ + P G T L +DLP+L + + P + A L P L+
Sbjct: 499 KTGNDLTKISNIAAPDEAPAAGGVATTLAKDDLPILKELMTWSLPSISRAKLEIPTNGLV 558
Query: 387 YMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLH--EKYLF 443
+ S L P S+ Y +L HF AK A + L +A +++ RL E LF
Sbjct: 559 QL-STLLPASTTYAELLSHFSALAKPPSLTVIAAHDHKLPLAELVEPFRDRLSLGEMDLF 617
Query: 444 CISPVDMNDDISSQGLTQFATNYSKKGIVQLREIF 478
C +PV+ D+ + + +Y+++G V + IF
Sbjct: 618 CFAPVNTRDERAKEIFVNLIEDYAEEGCVLVDNIF 652
>gi|255715361|ref|XP_002553962.1| KLTH0E11176p [Lachancea thermotolerans]
gi|238935344|emb|CAR23525.1| KLTH0E11176p [Lachancea thermotolerans CBS 6340]
Length = 744
Score = 295 bits (754), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 159/348 (45%), Positives = 220/348 (63%), Gaps = 20/348 (5%)
Query: 52 SGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLR 111
S + K + D++ P W+P ARK RK+I+H+G TNSGKT++AL RL+ G Y GPLR
Sbjct: 203 SSVNKTEDVDISNPAEWFPEARKWRRKIIMHIGSTNSGKTYRALQRLKQCDRGYYAGPLR 262
Query: 112 LLAWEVAKRLNKANVSCDLITGQER-EEVDGAKHRA----VTVEMADVVSDYDCAVIDEI 166
LLA EV +R + C+L+TG+E EE+D + A TVEM + +D V+DEI
Sbjct: 263 LLAREVYERFKNEQIKCNLLTGEEVIEELDEMGNPAGLTSGTVEMVPLSQKFDVVVLDEI 322
Query: 167 QMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-V 225
QM+G RG+++T ALLG A E+HLCG+ +A+PL+Q+I ++TGD++ V YERL L +
Sbjct: 323 QMMGDPDRGWAWTNALLGSIAREVHLCGEKSALPLVQKITKMTGDELIVNEYERLGELRI 382
Query: 226 PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRF 285
N ++ GDC+V FS+ I LK IE + ++VYGSLPPETR +QA F
Sbjct: 383 EENALKDGLKGLRKGDCVVAFSKKRILDLKLQIEKQTDLKVAVVYGSLPPETRIQQANMF 442
Query: 286 NDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY-- 343
N S E+DVLVASDA+GMGLNL+I R+IF+T KF+G E+ +LT VKQI GRAGR+
Sbjct: 443 N--SGEYDVLVASDAVGMGLNLSIERVIFTTHMKFNGQEMMELTSSNVKQIGGRAGRFKV 500
Query: 344 ----------GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFP 381
G K VG VT +D++ L + + P L+SA ++P
Sbjct: 501 SRTPANSVDGGKKASVGLVTGVDTKVLAAVKSGMEAPIEYLQSAVVWP 548
>gi|71021827|ref|XP_761144.1| hypothetical protein UM04997.1 [Ustilago maydis 521]
gi|46100582|gb|EAK85815.1| hypothetical protein UM04997.1 [Ustilago maydis 521]
Length = 891
Score = 294 bits (753), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 176/456 (38%), Positives = 253/456 (55%), Gaps = 30/456 (6%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DL P YP AR +R + LHVGPTNSGKTH AL L + +GI+ GPLRLLA EV R
Sbjct: 304 DLRFPTHQYPRARTLIRNIHLHVGPTNSGKTHGALVALSKARTGIFAGPLRLLAHEVWDR 363
Query: 121 LNKANVS-------CDLITGQEREEVDG-AKHRAVTVEMADVVSDYDCAVIDEIQMLGCK 172
N VS C+L+TG+E+ VD A + TVEM D VIDEIQM+G
Sbjct: 364 FNSGTVSPNVAARACNLVTGEEKRTVDPLAGLISCTVEMVATTRAVDVGVIDEIQMIGDA 423
Query: 173 TRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL- 231
RG+++T A+LG+ A ELHLCG+ + +PLI+ I + GD + + Y+RL+PL + +
Sbjct: 424 QRGYAWTNAVLGLAAKELHLCGEASVIPLIENIAKACGDHLTIHRYDRLTPLSVADESIH 483
Query: 232 GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSE 291
IQ GDC+V FSR I+ LK IE R C++ YG+LPPET+ QA FN+ +
Sbjct: 484 NDLGQIQKGDCVVAFSRSGIFALKSDIEKRTGLRCAVAYGALPPETKAEQAKLFNEG--K 541
Query: 292 FDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV-- 349
DV+VASDAIGMGLNL I R++F T+ K++G E L+ ++KQIAGRAGRYG++
Sbjct: 542 LDVMVASDAIGMGLNLRIKRVVFDTLTKWNGKEEVTLSASQIKQIAGRAGRYGTQDKETN 601
Query: 350 -----GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPD----SSLYG 400
G VT +L +L +L P + A + P+ + + S + P S
Sbjct: 602 KAELGGLVTTRHEHELEILRAALASPLLPITRAAIEPSSETLGQLSAMLPSVNGKSGPRT 661
Query: 401 ILEHFLENAKLSE----NYFFANCEEVLKVATVIDQLP---LRLHEKYLFCISPVDMNDD 453
+ + + + A LS N+F ++ + L ++ +I+ L + E+ F +P + D+
Sbjct: 662 LSQLYADVALLSRIDSTNFFLSDFSQKLTISPLIESASNGMLTVAERETFSNAPANTRDE 721
Query: 454 ISSQGLTQFATNYSKKGIVQLREIFTPGLGSLRVAE 489
L + +S+ G+V + LG L V E
Sbjct: 722 RVVAFLCKAVRQFSRGGLVDF-DTAVKDLGMLEVEE 756
>gi|413918542|gb|AFW58474.1| hypothetical protein ZEAMMB73_808258 [Zea mays]
Length = 441
Score = 294 bits (752), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 153/361 (42%), Positives = 221/361 (61%), Gaps = 3/361 (0%)
Query: 116 EVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
E+ ++N VSC L TGQE +EV A H A T+EM Y+ AV+DE+QM+ RG
Sbjct: 2 EIFDKVNATGVSCSLRTGQEVKEVAFASHLACTIEMVSTEEIYEVAVVDEVQMMADPVRG 61
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV-PLNVPLGSF 234
++TRALLG+ A E+HLCGD + + +I++I TGDD+ V YER PLV N G F
Sbjct: 62 SAWTRALLGLRAEEIHLCGDDSVLSVIRKICADTGDDLLVHQYERFKPLVVEENTLRGYF 121
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
NI++GD +V FSR I+ +K AIE+ H C ++YG+LPPETR +QA FN +E+DV
Sbjct: 122 QNIRSGDWVVAFSRKKIFEIKLAIETYTHHKCCVIYGALPPETRRQQAELFNQEHNEYDV 181
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 354
LVA+DA+GMGLNL+I R++F T+ K+DG + + VKQIAGRAGR GS +P G T
Sbjct: 182 LVATDAVGMGLNLSIRRVVFYTLIKYDGEKTASVPASLVKQIAGRAGRRGSAYPHGLATT 241
Query: 355 LDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSEN 414
DL L + L EP E GLFP F+ + M++ P+ + +L + ++ +
Sbjct: 242 FKY-DLCYLTRCLEEPLEEAEKVGLFPTFEQLEMFASQFPELTFNNLLNKLCDTCRIDDT 300
Query: 415 YFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQ 473
YF + + KVA +++ + L L +Y FC++P++ + + L +FA NYSK V
Sbjct: 301 YFICQHDNMKKVADMLEGVHGLSLKSRYGFCLAPMNTRNSEAMDHLLRFANNYSKSHYVT 360
Query: 474 L 474
+
Sbjct: 361 M 361
>gi|405119868|gb|AFR94639.1| mitochondrial RNA helicase [Cryptococcus neoformans var. grubii
H99]
Length = 828
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 183/455 (40%), Positives = 259/455 (56%), Gaps = 37/455 (8%)
Query: 60 TDLTR--PHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
TDLTR T + +R R LH+GPTNSGKT+ AL L +++G Y GPLRLLA EV
Sbjct: 199 TDLTRLIHSTDFLPSRAIKRHFHLHIGPTNSGKTYNALKALSIATTGAYAGPLRLLAHEV 258
Query: 118 AKRLNKANV--------SCDLITGQEREEVD-GAKHRAVTVEMADVV----SDYDCAVID 164
+R+N +V C+L+TG+ER V A + TVEM + + +D VID
Sbjct: 259 WERMNLGSVGGLDGKGRECNLLTGEERRVVHPDAGLLSCTVEMLPLAGLSGTGFDVVVID 318
Query: 165 EIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL 224
EIQMLG RG ++T+A+LG+ A E+HLCGD V L++ ++ GDD+ V Y RL+PL
Sbjct: 319 EIQMLGDGQRGGAWTKAVLGVAAKEIHLCGDETTVDLLRGMIAFLGDDLTVHQYNRLTPL 378
Query: 225 VPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQAT 283
N L ++ ++ GDCIVTFSR I+ +KK +ES+ C++VYG+LPPETR QA
Sbjct: 379 SVANESLKNDYTKVEDGDCIVTFSRSNIFEVKKQVESQAGKKCAVVYGALPPETRAEQAR 438
Query: 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
FND VLVASDA+GMGLNL I RIIF ++ KF+G L++ ++KQIAGRAGR+
Sbjct: 439 DFNDEDGASKVLVASDAVGMGLNLKIRRIIFESLSKFNGKSQVPLSLMQIKQIAGRAGRF 498
Query: 344 GS--------------KFPV--GEVTCLDSEDLPLLHKSLLEPSPMLESAGL-FPNFDLI 386
+ + P G T L +DLP+L + + P + A L P L+
Sbjct: 499 KTGNDLTKISNISAPDEAPAAGGIATTLAKDDLPILKELMTWSLPSISRAKLEIPTSGLV 558
Query: 387 YMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLH--EKYLF 443
+ S L P S+ Y +L HF AK + A + L +A +++ RL E LF
Sbjct: 559 QL-STLLPASTTYAELLSHFSALAKPPSSTIIAAHDHKLPLAELVEPFRDRLSLGEMDLF 617
Query: 444 CISPVDMNDDISSQGLTQFATNYSKKGIVQLREIF 478
C +PV+ D+ + + +Y+++G V + IF
Sbjct: 618 CFAPVNTRDERAKEIFVNLIEDYAEEGCVLIDNIF 652
>gi|50307239|ref|XP_453598.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642732|emb|CAH00694.1| KLLA0D12034p [Kluyveromyces lactis]
Length = 751
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 170/410 (41%), Positives = 247/410 (60%), Gaps = 23/410 (5%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D++ P W+P ARK R +I+HVGPTNSGKT+ AL +L++ G Y GPLRLLA EV R
Sbjct: 220 DISNPSEWFPEARKLKRTIIMHVGPTNSGKTYNALQKLKNCPRGYYAGPLRLLAREVYDR 279
Query: 121 LNKANVSCDLITGQER-EEVDGAKHRA----VTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ C+L+TG+E E++D + A TVEM + D+D V+DE+QML K RG
Sbjct: 280 FQNEGIRCNLLTGEEVIEDLDAMGNPAGLTSGTVEMIPLNRDFDICVLDEVQMLSEKDRG 339
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS-F 234
+++T A+LG+ A E+HLCG+ + +PL+ +I+++TGD + V YERL L + PL +
Sbjct: 340 WAWTNAILGVRAKEIHLCGEESVLPLMDKIVKLTGDTLVVNRYERLGKLEVEHQPLANGL 399
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
+++GDC++ FS+ +I LK IE ++VYGSLPPETR +QA FN S E+D+
Sbjct: 400 KGLKSGDCVIAFSKKSILDLKLRIEKETNLKVAVVYGSLPPETRVKQAKLFN--SGEYDI 457
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY-------GSKF 347
LVASDAIGMGLNL+I+R++F+ KF+GVE+ LT +KQI GRAGR+ SK
Sbjct: 458 LVASDAIGMGLNLSINRVVFTASYKFNGVEVVPLTFSNIKQIGGRAGRFKGKKADGSSKE 517
Query: 348 PVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIY-MYSRLHPDSSLYGILEHFL 406
+G VT +D + L + K + P LE A ++P +L+ + S P L +L F
Sbjct: 518 SIGHVTAIDEDILRDVRKGINAPIQYLEKAVVWPTDELVNDLLSYYPPGMKLTVLLNKFK 577
Query: 407 EN-----AKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMN 451
+ K E + + +V V+T D L L +K +PV +N
Sbjct: 578 TDILKSSTKSFELSYIDDKSKV--VSTFEDMRGLTLKDKLRLSNAPVRIN 625
>gi|388856167|emb|CCF50158.1| related to SUV3-ATP-dependent RNA helicase, mitochondrial [Ustilago
hordei]
Length = 868
Score = 293 bits (751), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 180/456 (39%), Positives = 252/456 (55%), Gaps = 30/456 (6%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DL RP+ Y AR +R + LHVGPTNSGKTH AL L + +GI+ GPLRLLA EV R
Sbjct: 280 DLRRPYYQYTRARSLIRNIHLHVGPTNSGKTHGALVALSKARTGIFAGPLRLLAHEVWDR 339
Query: 121 LNKANVS-------CDLITGQEREEVDG-AKHRAVTVEMADVVSDYDCAVIDEIQMLGCK 172
N VS C+L+TG+E+ VD A + TVEM +S D V+DEIQM+
Sbjct: 340 FNSGTVSPGVPARACNLMTGEEQRTVDPLAGLVSCTVEMVSTMSSVDVGVVDEIQMIADP 399
Query: 173 TRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL- 231
RG ++T +LG+ A ELHLCG+ + +PLI+ + + GD + V YERL+PL L
Sbjct: 400 HRGSAWTNVVLGLPAKELHLCGEASVIPLIESLAKACGDHLTVHRYERLTPLSVAEESLD 459
Query: 232 GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSE 291
I+ GDCIV FSR AI+ LKK IE R C++ YG+LPPET+ QA FN+ +
Sbjct: 460 DDLGKIERGDCIVAFSRSAIFALKKDIERRTGLRCAVAYGALPPETKAEQAKLFNEG--K 517
Query: 292 FDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV-- 349
DV+VASDAIGMGLNL I R+IF T+ K++G E L+ ++KQIAGRAGRYG++
Sbjct: 518 LDVMVASDAIGMGLNLGIKRVIFDTLTKWNGKEEITLSASQIKQIAGRAGRYGTQDKSTK 577
Query: 350 -----GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS----SLYG 400
G VT +L +L +L P + A + P + S + P + L
Sbjct: 578 KADLGGVVTTRHEYELEILRSALASPLLPITRAAIQPTSGTLSSLSAMLPGAGGGEGLRM 637
Query: 401 ILEHFLENAKLSE----NYFFANCEEVLKVATVIDQLP---LRLHEKYLFCISPVDMNDD 453
+ + F + A LS N+F ++ + ++ +I+ L L E+ F SP + D+
Sbjct: 638 LSQIFTDVALLSRIDSGNFFMSDFSQQSSISPLIESASSGLLTLEERATFSSSPANRRDE 697
Query: 454 ISSQGLTQFATNYSKKGIVQLREIFTPGLGSLRVAE 489
L+ +S+ G+V + LG L V +
Sbjct: 698 RLMAFLSNIVRQFSRGGLVDF-DTAAKDLGMLEVED 732
>gi|146419707|ref|XP_001485814.1| hypothetical protein PGUG_01485 [Meyerozyma guilliermondii ATCC
6260]
Length = 566
Score = 293 bits (749), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 158/370 (42%), Positives = 225/370 (60%), Gaps = 11/370 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
DL+ P +W+P ARK RK++LHVGPTNSGKT+ +L L S SG Y GPLRLLA E+
Sbjct: 50 LVDLSSPASWFPEARKMKRKLVLHVGPTNSGKTYNSLQELAKSKSGYYAGPLRLLAREIY 109
Query: 119 KRLNKANVSCDLITGQER----EEVDGAKH-RAVTVEMADVVSDYDCAVIDEIQMLGCKT 173
+R N+ + C+LITG+E +EV + T+EM + D VIDEIQM+
Sbjct: 110 ERFNQQGIRCNLITGEEVVPSIDEVGKVSDISSGTIEMIPLHKPMDTCVIDEIQMIADDR 169
Query: 174 RGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS 233
RG ++T A+LG+ A +H+CG+ +AVPLI+++ +TGD++++++YERL L L
Sbjct: 170 RGSAWTGAVLGVQAKVIHMCGEQSAVPLIKKLANITGDELEIKTYERLGKLTVAQKELHL 229
Query: 234 FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293
+ GDC++ FS+ I LK IE K ++YG+LPPE R+++A FN S ++D
Sbjct: 230 LKKLAKGDCVIAFSKRKILELKCEIEKMTKFRVGVIYGALPPEIRSKEANGFN--SGQYD 287
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY--GSKFPVGE 351
+LVASDA+GMGLNL I R++F T KF+G E LT KQIAGRAGR+ G G
Sbjct: 288 ILVASDAVGMGLNLKIKRVVFFTTTKFNGSETVPLTASATKQIAGRAGRFSAGKGQLEGF 347
Query: 352 VTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY-SRLHPDSSLYGILEHFL-ENA 409
VT L ++DL + K + EP+ L A ++P + +Y S+ +S Y IL F E A
Sbjct: 348 VTALKAKDLRHVRKMMAEPNQDLVKACIWPTNKIWMLYMSKFPQGTSFYEILSQFAHETA 407
Query: 410 KLSENYFFAN 419
+ + FF
Sbjct: 408 DVKMSDFFVT 417
>gi|255724706|ref|XP_002547282.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240135173|gb|EER34727.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 738
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 165/425 (38%), Positives = 252/425 (59%), Gaps = 22/425 (5%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D++ P W+P ARK RK+++HVGPTNSGKT+ +L +L S +G Y GPLRLLA EV +R
Sbjct: 211 DISVPAEWFPEARKMKRKIVMHVGPTNSGKTYNSLVKLSKSKTGYYAGPLRLLAREVYER 270
Query: 121 LNKANVSCDLITGQE-----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
N V C+LITG+E E + + T+EM + D VIDEIQM+ RG
Sbjct: 271 FNDQGVGCNLITGEEIVPFIDEHGKISGLASGTIEMIPLHRKMDLCVIDEIQMIADSRRG 330
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+T A+LG+ A+E+HLCG+ +AVPLIQ+I+++TGD+++V+ ++RL L + S
Sbjct: 331 SVWTNAVLGVLAHEIHLCGEESAVPLIQKIVEITGDELEVKHFKRLGKLT-VEKTSTRLS 389
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
++ GDC+V FS+ I K IE + +VYG+LPPE R+++A +FN E+DVL
Sbjct: 390 QLKKGDCLVAFSKRKIMDYKCRIEQESRLKVGVVYGALPPEIRSQEAAKFNRG--EYDVL 447
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY----GSKFPVGE 351
VASDA+GMGLNL I+R++FS + K+DG +++LTV +VKQIAGRAGRY GSK G
Sbjct: 448 VASDAVGMGLNLKINRVVFSGISKYDGSVVKNLTVSQVKQIAGRAGRYSKDTGSK--EGF 505
Query: 352 VTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI--YMYSRLHPDSSLYGILEHFLENA 409
VT L L + + L EP L+ A ++P ++ YM + L +L +
Sbjct: 506 VTALQRSSLVYIQECLREPVSYLQQACIWPTNNIWRNYMVNGRTDKVQLSDVLRSYFSTM 565
Query: 410 KLSEN--YFFANCEEVLKVATVIDQLP----LRLHEKYLFCISPVDMNDDISSQGLTQFA 463
+ + YF + ++ +++ +I + + ++ C +P+ + SQ + Q
Sbjct: 566 LTTRHGLYFVSEWDQKVELLDLISSDKHLSRMSIDDQLTLCETPIGLAKAKGSQVMLQAV 625
Query: 464 TNYSK 468
++ K
Sbjct: 626 HDFFK 630
>gi|149248272|ref|XP_001528523.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146448477|gb|EDK42865.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 739
Score = 292 bits (748), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 165/413 (39%), Positives = 258/413 (62%), Gaps = 26/413 (6%)
Query: 55 KKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLA 114
K+ DF++ P W+P ARK RK+++HVGPTNSGKT+++L +L S +G Y GPLRLLA
Sbjct: 219 KEIDFSN---PTEWFPEARKMKRKIVMHVGPTNSGKTYRSLVQLSKSKTGYYAGPLRLLA 275
Query: 115 WEVAKRLNKANVSCDLITGQE-REEVDGAKH----RAVTVEMADVVSDYDCAVIDEIQML 169
E+ +R NK V C+LITG+E +D H + T+EM + D VIDEIQM+
Sbjct: 276 REIWERFNKQGVGCNLITGEEIIPSIDEYGHISGVASGTIEMIPLHKTMDLCVIDEIQMI 335
Query: 170 GCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNV 229
+ RG +T A+LG+ A E+HLCG+ +AVPLI+++++ TGDD++++ ++R+ L +
Sbjct: 336 QDEQRGSVWTNAVLGVLAREIHLCGEESAVPLIEKLVKYTGDDLEIKRFKRMGKLTVESQ 395
Query: 230 PLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDAS 289
P+ +S ++ GDC+V F++ I K +E +VYG LPPE R ++A +FN +
Sbjct: 396 PVDLYS-LRKGDCLVAFAKRKILEYKSKLEKNTNLRVGVVYGGLPPEIRAQEAEKFN--T 452
Query: 290 SEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY----GS 345
++DVLVASDA+GMGLNL I RI+FS+ K++G EL++LT +VKQIAGRAGR+ GS
Sbjct: 453 GKYDVLVASDAVGMGLNLKIKRIVFSSTNKYNGTELKNLTPSQVKQIAGRAGRFSVEKGS 512
Query: 346 KFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS--SLYGILE 403
+ G VT L E L + K++ P L A ++P+ +L++ + + + SLY
Sbjct: 513 Q--EGFVTALTRESLVFIKKNMDTPIEYLSRARIWPS-ELVWKHYMANQSTTESLYETFT 569
Query: 404 HFL-ENAKLS-ENYFFANCEEVLKVATVI-DQLPLR---LHEKYLFCISPVDM 450
FL E K E+Y + L++ +I D LR ++++++ +P+++
Sbjct: 570 RFLSEKMKFEHEDYELSEVAPKLEILQIISDDKYLRNMTINDQFVLAETPINL 622
>gi|363749699|ref|XP_003645067.1| hypothetical protein Ecym_2529 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888700|gb|AET38250.1| Hypothetical protein Ecym_2529 [Eremothecium cymbalariae
DBVPG#7215]
Length = 727
Score = 292 bits (748), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 158/394 (40%), Positives = 240/394 (60%), Gaps = 20/394 (5%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D++ P WY ARK RK+++H+GPTNSGKT+ AL +L+ ++ G Y GPLRLLA EV +
Sbjct: 205 DISNPSEWYSGARKLKRKIVMHLGPTNSGKTYNALEKLKKATRGYYAGPLRLLAREVYDK 264
Query: 121 LNKANVSCDLITGQE-REEVDGAKHRA----VTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ N+ C+L+TG+E ++D ++A TVEM + ++D V+DEIQML + RG
Sbjct: 265 FKQQNIRCNLLTGEEIINDLDHIGNKAGLTSGTVEMIPLNQEFDVVVLDEIQMLADEQRG 324
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLG-SF 234
+++T A LG ++E+HLCG+ + +PLIQ+++++TGDD+ V Y RL LV + PL F
Sbjct: 325 WAWTNAFLGARSSEVHLCGERSVLPLIQKLVKITGDDLIVNEYSRLGKLVIESEPLSLGF 384
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
S ++ GDC+++FS+ I LK +E + S++YGSLPPETR +QA FN S D+
Sbjct: 385 SGLKKGDCLISFSKRKILNLKLKVERCTNYKVSVIYGSLPPETRIKQANMFNSGHS--DI 442
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKF------P 348
L+ASDA+GMGLNL+I RI+F+ K++G E++ L P +KQI GRAGRY K
Sbjct: 443 LIASDAVGMGLNLSIKRIVFTESSKWNGAEMQPLEDPIIKQIGGRAGRYKPKDNSDVNPS 502
Query: 349 VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIY-MYSRLHPDSSLYGILEHFLE 407
G VT LD E L + + P L SA ++P ++I ++ P + ++E+F
Sbjct: 503 KGYVTGLDDEILSAVRSGINAPITYLSSAIIWPTEEIITSALAKYQPGTKFSTLIENFNR 562
Query: 408 NAKLSENYFFANCEEVLKVATV-----IDQLPLR 436
+ N + + K+ + I+ L LR
Sbjct: 563 DVTTKSNNLYTLADSSKKIEFIREYEKIEGLSLR 596
>gi|343425881|emb|CBQ69414.1| related to SUV3-ATP-dependent RNA helicase, mitochondrial
[Sporisorium reilianum SRZ2]
Length = 884
Score = 291 bits (746), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 172/442 (38%), Positives = 246/442 (55%), Gaps = 30/442 (6%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DL P YP AR R + LHVGPTNSGKTH AL L + +GI+ GPLRLLA EV R
Sbjct: 302 DLRFPVHQYPRARSLTRNIHLHVGPTNSGKTHGALVALSKARTGIFAGPLRLLAHEVWDR 361
Query: 121 LNKANVS-------CDLITGQEREEVDG-AKHRAVTVEMADVVSDYDCAVIDEIQMLGCK 172
N VS C+L+TG+E+ VD A + TVEM D V+DEIQM+G
Sbjct: 362 FNSGTVSPEVAARACNLVTGEEKRTVDTLAGLVSCTVEMVSTQRAVDVGVVDEIQMIGDA 421
Query: 173 TRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL- 231
RG+++T A+LG+ A ELHLCG+ + +PLI+ + GD + V YERL+PL + L
Sbjct: 422 QRGYAWTNAVLGLPAKELHLCGEASVIPLIEHMAAACGDHLTVHRYERLTPLSVADESLH 481
Query: 232 GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSE 291
+ I+ GDCIV FSR I+ LK+ IE R C++ YG+LPPET+ QA FN + +
Sbjct: 482 DDLTQIEKGDCIVAFSRSGIFALKRDIEQRTGLRCAVAYGALPPETKAEQAKLFN--AGK 539
Query: 292 FDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV-- 349
DV+VASDAIGMGLNL I R++F T+ K++G E L+ ++KQIAGRAGRYG++
Sbjct: 540 LDVMVASDAIGMGLNLRIKRVVFDTLSKWNGKEEVVLSASQIKQIAGRAGRYGTQDKSTK 599
Query: 350 -----GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHP----DSSLYG 400
G VT +L +L +L P + A + P+ D + S + P SS
Sbjct: 600 TADLGGVVTTRHEHELDILRAALASPLVPITRAAIQPSSDALSQLSAMLPGKDGKSSGLR 659
Query: 401 ILEHFLENAKL-----SENYFFANCEEVLKVATVIDQLP---LRLHEKYLFCISPVDMND 452
L + L S+++F ++ + L+++ +I+ L + E+ F +P + D
Sbjct: 660 TLSQLFGDVSLLSRIDSDHFFLSDFSQQLRISPLIESASSGMLTVGERETFSDAPANTRD 719
Query: 453 DISSQGLTQFATNYSKKGIVQL 474
+ L +S+ +V+
Sbjct: 720 ERVVAFLCNGVRQFSRGALVEF 741
>gi|342180609|emb|CCC90085.1| putative RNA helicase [Trypanosoma congolense IL3000]
Length = 620
Score = 291 bits (745), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 181/508 (35%), Positives = 276/508 (54%), Gaps = 40/508 (7%)
Query: 22 DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKF-DFTDLTRPHTWYPLARKKVRKVI 80
D P+ + ++ G +DVI+R + + +K + P WYP AR R+ I
Sbjct: 65 DAQPPWLADLKEAPGDLERIDVILREFGAWYVARKAPQRVTMHEPWDWYPKARFMRRRFI 124
Query: 81 LHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVD 140
H GPTNSGKTH AL L + SG+YC P++ LA +V K +N A V CDL+ G ER+
Sbjct: 125 FHHGPTNSGKTHAALEELVKAKSGVYCAPIKALASQVWKHVN-ARVPCDLLIGDERKFGG 183
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVP 200
GA+H + TVEM + D VIDE+QM+G + RG+++ RA+LG+ A E+HLCG+ A+P
Sbjct: 184 GAEHVSCTVEMTPIDYQVDVGVIDEVQMMGDRDRGWAWARAILGLPAREIHLCGEGRAIP 243
Query: 201 LIQQILQVT--GDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
L++++L T + +++ S+ERL PL G ++ GDC+V FSR AI+ LK+ +
Sbjct: 244 LVRKLLHRTREANSLRLMSHERLVPLEVSPTLNGDLRLVENGDCLVCFSRRAIFTLKERL 303
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFN----DA----SSEFDVLVASDAIGMGLNLNIS 310
+YGS+P R QA FN DA S E VLV++DAI GLN++I
Sbjct: 304 GRLPGVTPHYIYGSMPFSVREAQADAFNRGVRDAIQRGSVEKHVLVSTDAIAYGLNMSIE 363
Query: 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG--SKFPVGEVTCLDSEDLPLLHKSLL 368
RIIF++MKKFDG ++ L + Q+AGRAGR+G +G T L +++ L +L
Sbjct: 364 RIIFTSMKKFDGKQMVALPPATMVQVAGRAGRFGVLRASALGRCTTLHADEFQALRDALG 423
Query: 369 EPSPMLESAGLFPNFDLIYMYSRL------------HPDSSLYGILEHFLENAKLSENYF 416
P P++ +GL P D++ +Y+ + + Y ++ F +LS+ +F
Sbjct: 424 APLPLVHKSGLLPTADILELYTEMVAREEAGKTSGGDGRGTFYERVKDFSGQCQLSDIFF 483
Query: 417 FAN-CEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQL 474
+ +L+VA +D++P L L ++ LFC P++ D + L FA ++ G V+L
Sbjct: 484 PCDLSRSLLQVAKELDRVPGLSLSDRILFCYVPLNDRDKETFDLLRSFAQDHVDGGPVRL 543
Query: 475 R------------EIFTPGLGSLRVAEF 490
R E G+G RV E
Sbjct: 544 RIDEEFGKLSEQCEHLNSGVGDRRVHEM 571
>gi|336368066|gb|EGN96410.1| hypothetical protein SERLA73DRAFT_186151 [Serpula lacrymans var.
lacrymans S7.3]
gi|336380797|gb|EGO21950.1| hypothetical protein SERLADRAFT_475024 [Serpula lacrymans var.
lacrymans S7.9]
Length = 584
Score = 291 bits (745), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 184/462 (39%), Positives = 258/462 (55%), Gaps = 56/462 (12%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANV---------- 126
RKVI+HVGPTNSGKTH AL L ++ G+Y GPLRLLA E+ +RLNK +
Sbjct: 3 RKVIMHVGPTNSGKTHMALRALAAARVGVYAGPLRLLAHEIWERLNKGQIVPLGVDPDDE 62
Query: 127 -------------------------------SCDLITGQEREEV-DGAKHRAVTVEMADV 154
C+L TG+E V D A + TVEM
Sbjct: 63 AQPDTTLIADVVNTEGSRPTVRKEGSSKYARECNLRTGEEARYVSDSAGLLSCTVEMITE 122
Query: 155 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVK 214
++ D AV+DEIQM+ RG ++T A+LG+ A ELHLCG+ AVP+I+++L+ TGD++
Sbjct: 123 SAELDVAVVDEIQMIADTDRGAAWTHAVLGLPARELHLCGEETAVPIIEELLKDTGDELI 182
Query: 215 VQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSL 273
V+ YERL+PLV L G + +Q GDC+VTFSR I+ LK+ +E C++ YG L
Sbjct: 183 VKRYERLTPLVVQEESLEGDLNRVQKGDCVVTFSRSNIFALKQKVERATGLRCAVAYGRL 242
Query: 274 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 333
PPE R+ QA FND +S +DV++ SDAIGMGLNL I RI+F ++KFDG R L+ ++
Sbjct: 243 PPEIRSEQAALFNDPNSGYDVMIGSDAIGMGLNLKIKRIVFEALRKFDGDRERMLSTSQI 302
Query: 334 KQIAGRAGRYG-SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSR- 391
KQIAGRAGRYG P G VT L+++DLP L +L P+ L A L + S+
Sbjct: 303 KQIAGRAGRYGLHGEPGGFVTTLNADDLPALRSALSMPADPLTMARLVIKSSWLDSVSQV 362
Query: 392 LHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP--LRLHEKYLFCISPVD 449
L PD+SL I E +K+ + + + ++A +D L +K L+ +P+
Sbjct: 363 LPPDASLLTIFEVPGYVSKVRQPFQATTQHRLDEMAKFVDTFANDLTFEDKLLYMSAPIS 422
Query: 450 MNDDISSQGLTQFATNYSKKGIVQLR-EIFTPGLGSLRVAEF 490
+D + L +F Y Q+R +I+T +LR A F
Sbjct: 423 WSDPAFLEVLKRFVRMYQS----QIRVDIYT----ALRSAPF 456
>gi|148700154|gb|EDL32101.1| suppressor of var1, 3-like 1 (S. cerevisiae), isoform CRA_b [Mus
musculus]
Length = 551
Score = 291 bits (744), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 152/352 (43%), Positives = 224/352 (63%), Gaps = 10/352 (2%)
Query: 126 VSCDLITGQEREEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRA 181
V CDL+TG+ER V+ A H + TVEM +V + Y+ AVIDEIQM+ RG+++TRA
Sbjct: 21 VPCDLVTGEERLTVEPEGKQATHVSCTVEMCNVATPYEVAVIDEIQMIRDPARGWAWTRA 80
Query: 182 LLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGD 241
LLG+CA E+HLCG+ AA+ L+ ++L TG++V+VQ YERL+P+ L+ L S N+Q GD
Sbjct: 81 LLGLCAEEVHLCGESAAINLVSELLYTTGEEVEVQKYERLTPISVLDHALESLDNLQPGD 140
Query: 242 CIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI 301
CIV FS++ IY + + IE RG +++YGSLPP T+ QA +FND + +LVA+DAI
Sbjct: 141 CIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQARKFNDPNDPCKILVATDAI 199
Query: 302 GMGLNLNISRIIFSTMKKFD-----GVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 356
GMGLNL+I RIIF ++ K EL +T + QIAGRAGR+ S F G+VT +
Sbjct: 200 GMGLNLSIRRIIFYSLIKPSINEKGEKELEPITTSQALQIAGRAGRFSSHFKEGQVTTMH 259
Query: 357 SEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYF 416
+DL LL L P +++AGL P + I M++ P+++L +++ F++ A++ YF
Sbjct: 260 RDDLALLKDILNRPVDPIQAAGLHPTAEQIEMFAYHLPETTLSNLIDIFVDFAQVDGQYF 319
Query: 417 FANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
N ++ A +I +PL L +Y+FC +P++ L QFA YS+
Sbjct: 320 VCNMDDFKFSAELIQHIPLSLRVRYVFCTAPINKKQPFVCSSLLQFARQYSR 371
>gi|403337506|gb|EJY67972.1| hypothetical protein OXYTRI_11514 [Oxytricha trifallax]
Length = 901
Score = 291 bits (744), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 148/323 (45%), Positives = 211/323 (65%), Gaps = 22/323 (6%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
TDLT PH W+P RK RK+ H+GPTNSGKT A+ RL + SG+YC PLRLLAWE+++
Sbjct: 249 TDLTMPHEWFPETRKMKRKIFYHMGPTNSGKTRGAIQRLMEAKSGLYCAPLRLLAWEISE 308
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
L+ + C+LITGQE++ + + H + TVEMAD+ ++Y+ AVIDEIQM+ RG+++T
Sbjct: 309 TLSNYGIPCNLITGQEKQLMVDSHHLSCTVEMADLQNEYEVAVIDEIQMIDDPERGYAWT 368
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQT 239
ALLG+ A+E+H+ G+ A+ LI +++Q TGD++ + +YERLS L + + SFS ++
Sbjct: 369 NALLGLKAHEIHIVGEERALSLIDRMVQDTGDELFINNYERLSTLQVEHKTIRSFSEFKS 428
Query: 240 GDCIVTFSRHAIYRLKKAIES--RGKHL-------------CSIVYGSLPPETRTRQATR 284
GDCI+ FSR ++++K + RG+ C+I+YG+LPPE++ QA
Sbjct: 429 GDCIIAFSRRELFQIKSQLNKHIRGQQQDKEQKQNDEEVNHCAIIYGALPPESKKNQAFM 488
Query: 285 FNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPE--VKQIAGRAGR 342
FN+ + LVA+DAIGMGLNL+I RIIFST+ K V+ R V E +KQIAGRAGR
Sbjct: 489 FNNRVGDIKYLVATDAIGMGLNLSIKRIIFSTLSK--RVKGRTEQVNEFHIKQIAGRAGR 546
Query: 343 YGSKFPVGEVTCLDSEDLPLLHK 365
Y G VT DL + +
Sbjct: 547 Y---IEDGYVTAFRDRDLQQIRQ 566
>gi|320167149|gb|EFW44048.1| SUPV3L1 protein [Capsaspora owczarzaki ATCC 30864]
Length = 611
Score = 291 bits (744), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 147/345 (42%), Positives = 222/345 (64%), Gaps = 4/345 (1%)
Query: 142 AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPL 201
+ H A T+EMADV +D AVIDE+Q++G + RG+++TRALLG+ A+E+H+CG+P A+ +
Sbjct: 200 SSHVACTIEMADVDKVFDVAVIDEVQLIGDRDRGWAWTRALLGLAAHEIHVCGEPRALSI 259
Query: 202 IQQILQVTGDDVKVQSYERLSPLV--PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
++ +L+ TG+DV+V +YERL+PLV P ++ + +N++ GD I+ FSR ++R K IE
Sbjct: 260 VESLLKSTGEDVQVHTYERLTPLVVAPHSINR-NLANLRRGDAIIAFSRKELFRWKAEIE 318
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
+ C+IVYGSLPP+TR +QA FN S FD+LVA+DAIGMGLNLNI RIIF+T++K
Sbjct: 319 RETRFRCAIVYGSLPPQTRAQQARLFNQPDSGFDILVATDAIGMGLNLNIGRIIFTTLQK 378
Query: 320 FDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGL 379
F+GV L+ EV+QIAGRAGR+ SKFP GE T + ED+ +L K P+ L+ AGL
Sbjct: 379 FNGVSNVTLSPSEVRQIAGRAGRFRSKFPRGEFTTFEPEDMGILIKQFNGPADSLQ-AGL 437
Query: 380 FPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHE 439
NF+ + S+ P + + + F + A+L + YF + + + ++ L L +
Sbjct: 438 MANFEQLEALSKQLPGADMLDLFTKFEDLARLDKRYFMCDSSDRKEAIKLLAPLNLSFKD 497
Query: 440 KYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGLGS 484
+Y F ++P ++ +D L FAT + + L I P S
Sbjct: 498 RYTFILAPANLENDYMRSCLLSFATGFEANRPITLAAITVPSTTS 542
Score = 88.6 bits (218), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 40/82 (48%), Positives = 51/82 (62%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+D+ +P Y AR RK I H GPTNSGKT+ AL R ++ GIYC PLRLLA EV
Sbjct: 25 SDMRQPQLTYHQARSMQRKFIFHAGPTNSGKTYSALKRFREANRGIYCAPLRLLALEVYD 84
Query: 120 RLNKANVSCDLITGQEREEVDG 141
N + CDL+TG++R+ G
Sbjct: 85 DTNNHGIPCDLVTGEDRKSGKG 106
>gi|68486418|ref|XP_712944.1| hypothetical protein CaO19.4519 [Candida albicans SC5314]
gi|68486481|ref|XP_712911.1| hypothetical protein CaO19.11994 [Candida albicans SC5314]
gi|46434331|gb|EAK93744.1| hypothetical protein CaO19.11994 [Candida albicans SC5314]
gi|46434367|gb|EAK93779.1| hypothetical protein CaO19.4519 [Candida albicans SC5314]
Length = 720
Score = 291 bits (744), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 154/382 (40%), Positives = 237/382 (62%), Gaps = 17/382 (4%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D + P W+P ARK RK+I+HVGPTNSGKT+ +L +L S +G Y GPLRLLA E+ ++
Sbjct: 198 DFSNPAEWFPEARKMKRKIIMHVGPTNSGKTYNSLIKLSKSKTGYYAGPLRLLAREIYEK 257
Query: 121 LNKANVSCDLITGQE-------REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKT 173
N + C+LITG+E +V G + T+EM + D VIDEIQM+
Sbjct: 258 FNSQGIGCNLITGEEVVPSIDKYGKVSGIA--SGTIEMIPLHKKMDLCVIDEIQMIADPL 315
Query: 174 RGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS 233
RG +T A+LG+ A+E+HLCG+ +AVP IQ+++++TGD+++++ + RL L + S
Sbjct: 316 RGSVWTNAVLGVLAHEIHLCGEESAVPFIQKMVEITGDELEIKKFNRLGKLT-VEKSNTS 374
Query: 234 FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293
++ GDC+V FS+ I + K IE + ++YG+LPPE R+++A++FN+ E+D
Sbjct: 375 LQQLKKGDCLVVFSKKKILKFKCDIERNTRLKVGVIYGALPPEIRSQEASKFNNG--EYD 432
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGE-- 351
VLVASDAIGMGLNL I+RI+FS + KF+G + L+V +VKQIAGRAGR+ ++ E
Sbjct: 433 VLVASDAIGMGLNLKINRIVFSGVNKFNGSTVEKLSVSQVKQIAGRAGRFSAQHGSKEGF 492
Query: 352 VTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHP-DSSLYGILEHFLENAK 410
VT L L + + L P + A ++P ++ Y P SSL + E+FL N
Sbjct: 493 VTALHRSSLVYIDQCLKTPVSEISKACIWPTSNIWRQYMANDPRKSSLSSVYENFLTNVL 552
Query: 411 --LSENYFFANCEEVLKVATVI 430
S+N+F + ++ +++ ++
Sbjct: 553 KFQSDNFFISELDQKVQLLNLV 574
>gi|345491178|ref|XP_001607739.2| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase SUV3
homolog, mitochondrial-like [Nasonia vitripennis]
Length = 705
Score = 290 bits (743), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 165/420 (39%), Positives = 241/420 (57%), Gaps = 44/420 (10%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP+AR RK+I H GPTNSGKT+ AL R S+ +G+YCGPL++LA EV
Sbjct: 171 SDLRTPANWYPVARAITRKIIFHAGPTNSGKTYHALERFMSAKTGVYCGPLKMLATEVYN 230
Query: 120 RLNKANVSCDLITGQER----EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ NK CDL+TG+ER +E + + H A TVEM ++ + AVIDEIQ++ RG
Sbjct: 231 KSNKNGTPCDLVTGEERKYAKDENNPSNHVACTVEMMNLNHPCEVAVIDEIQLIQDPGRG 290
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+ TG+DV+V+ Y+RL+ L + LG+ S
Sbjct: 291 WX-------------------------------TGEDVEVRKYKRLTELEIEDAALGTLS 319
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N+Q GDCIV F+++ IY + + +E R + +++YGSLPP T+ QA +FND + VL
Sbjct: 320 NVQPGDCIVCFNKNDIYTVSRNLEQRNMEV-AVIYGSLPPGTKLAQAAKFNDPNHPCKVL 378
Query: 296 VASDAIGMGLNLNISRIIFSTM-----KKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VA+DAIGMGLNL+I R+IF ++ K E+ ++V QIAGRAGRYG+++ G
Sbjct: 379 VATDAIGMGLNLHIRRLIFYSLIKPSINKKGEREMDTISVSSALQIAGRAGRYGTQWEKG 438
Query: 351 EVTCLDSEDLPLLHKSLLEPSP-MLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
VT EDLP L KSLL SP + AGL P D I +Y+ P + L +++ F+
Sbjct: 439 FVTTFKPEDLPTL-KSLLSQSPDTITQAGLHPTADQIELYAYHLPKAPLSNLMDIFVSLC 497
Query: 410 KLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ ++ YF N ++ +A +I+ +PL L +Y+FC +P++ +FA Y K
Sbjct: 498 TVDDSMYFMCNIDDFKFLADMIEHVPLPLRARYVFCCAPINRKLPFVCTMFLKFARQYCK 557
>gi|238882216|gb|EEQ45854.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 720
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 153/382 (40%), Positives = 237/382 (62%), Gaps = 17/382 (4%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D + P W+P ARK RK+I+HVGPTNSGKT+ +L +L S +G Y GPLRLLA E+ ++
Sbjct: 198 DFSNPAEWFPEARKMKRKIIMHVGPTNSGKTYNSLIKLSKSKTGYYAGPLRLLAREIYEK 257
Query: 121 LNKANVSCDLITGQE-------REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKT 173
N + C+LITG+E +V G + T+EM + D +IDEIQM+
Sbjct: 258 FNSQGIGCNLITGEEVVPSIDKYGKVSGIA--SGTIEMIPLHKKMDLCIIDEIQMIADPL 315
Query: 174 RGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS 233
RG +T A+LG+ A+E+HLCG+ +AVP IQ+++++TGD+++++ + RL L + S
Sbjct: 316 RGSVWTNAVLGVLAHEIHLCGEESAVPFIQKMVEITGDELEIKKFNRLGKLT-VEKSNTS 374
Query: 234 FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293
++ GDC+V FS+ I + K IE + ++YG+LPPE R+++A++FN+ E+D
Sbjct: 375 LQQLKKGDCLVVFSKKKILKFKCDIERNTRLKVGVIYGALPPEIRSQEASKFNNG--EYD 432
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGE-- 351
VLVASDAIGMGLNL I+RI+FS + KF+G + L+V +VKQIAGRAGR+ ++ E
Sbjct: 433 VLVASDAIGMGLNLKINRIVFSGVNKFNGSTVEKLSVSQVKQIAGRAGRFSAQHGSKEGF 492
Query: 352 VTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHP-DSSLYGILEHFLENAK 410
VT L L + + L P + A ++P ++ Y P SSL + E+FL N
Sbjct: 493 VTALHRSSLVYIDQCLKTPVSEISKACIWPTSNIWRQYMANDPRKSSLSSVYENFLTNVL 552
Query: 411 --LSENYFFANCEEVLKVATVI 430
S+N+F + ++ +++ ++
Sbjct: 553 KFQSDNFFISELDQKVQLLNLV 574
>gi|260941850|ref|XP_002615091.1| hypothetical protein CLUG_05106 [Clavispora lusitaniae ATCC 42720]
gi|238851514|gb|EEQ40978.1| hypothetical protein CLUG_05106 [Clavispora lusitaniae ATCC 42720]
Length = 716
Score = 290 bits (742), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 166/406 (40%), Positives = 238/406 (58%), Gaps = 31/406 (7%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D+ P W+P ARK RK+I+HVGPTNSGKTH +L ++ SG Y GPLRLLA E+ +R
Sbjct: 199 DIGNPAEWFPQARKMKRKIIMHVGPTNSGKTHNSLKAFAAAKSGYYAGPLRLLAREIYER 258
Query: 121 LNKANVSCDLITGQE-----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ C+LITG+E E + + T+EM + D +IDEIQML TRG
Sbjct: 259 FEGQGIHCNLITGEEVVPSLDEYGSVSNLSSGTIEMIPLHKKMDICIIDEIQMLADPTRG 318
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
++T A+LG+ A E+HLCG+ +AV L++++++ TGD++ ++ Y+RL L P+G
Sbjct: 319 SAWTNAVLGVQAKEVHLCGEESAVALVKEMVKSTGDELVIKQYKRLGKLTMCQKPVGRLE 378
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
N+Q GDC++ FS+ I LK IE ++YG+LPPE R++ + +FN S E+DVL
Sbjct: 379 NLQKGDCLIAFSKRKILELKCRIEQSTSLKVGVIYGALPPEIRSQASAKFN--SGEYDVL 436
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGE--VT 353
VASDAIGMGLNL I RI+F ++ KF+G ++ L+V KQIAGRAGR+ + E VT
Sbjct: 437 VASDAIGMGLNLKIKRIVFWSIMKFNGSDMVPLSVSATKQIAGRAGRFSADQGESEGLVT 496
Query: 354 CLDSEDLPLLHKSLLEPSPMLESAGLFP--NFDLIYMYSRLH--PDSSLYGILEHFLENA 409
S+DL L ++ EP +E A ++P F + Y+ S P S E + N
Sbjct: 497 AFKSKDLRFLQLAMREPIKNVEKACIWPPSEFWVHYVSSFRSPLPLSEAVKKFEKSIGNR 556
Query: 410 KLSENYFFANCEEVLKV------------ATVIDQL-----PLRLH 438
KL +NYF + + L++ T+ DQL PL LH
Sbjct: 557 KL-DNYFLSEFDHQLEILDLLLRNRLSKSLTIEDQLSLASVPLNLH 601
>gi|390598472|gb|EIN07870.1| P-loop containing nucleoside triphosphate hydrolase protein
[Punctularia strigosozonata HHB-11173 SS5]
Length = 764
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 172/464 (37%), Positives = 251/464 (54%), Gaps = 45/464 (9%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
TDL+ P +P AR RK+I+HVGPTNSGKTH AL L ++ +G+Y GPLRLLA E+ +
Sbjct: 171 TDLSYPAERFPNARSMRRKIIMHVGPTNSGKTHNALRALAAARTGVYAGPLRLLAHEIWE 230
Query: 120 RLNKANV-------------------------------------SCDLITGQEREEV-DG 141
RLNK + C+L+TG+E+ V +
Sbjct: 231 RLNKGQIVPLGAPESLADADDAIGPDIGDGIPAAHRDPRAPYARQCNLVTGEEQRIVNEA 290
Query: 142 AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPL 201
A + TVEM + YD V+DEIQ++ RG ++T A+L +CA ELHLCGD AVP+
Sbjct: 291 AGLTSCTVEMLSPLQMYDVGVVDEIQLIKDDDRGGAWTSAVLSLCAKELHLCGDETAVPI 350
Query: 202 IQQILQVTGDDVKVQSYERLSPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIES 260
I+ I++ TGD++ + Y+RL+PL L S F N++ GDC+VTFSR+ I+++K+ IE
Sbjct: 351 IEDIVKDTGDELIINRYQRLTPLHVAPKSLESNFKNVKKGDCVVTFSRNNIFQVKEQIEE 410
Query: 261 RGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKF 320
C++ YG LPPE R++QA FND S +DV+V SDAIG+GLNL I+R++F M K+
Sbjct: 411 ETGLRCAVAYGRLPPELRSKQAALFNDPKSGYDVIVGSDAIGLGLNLKINRVVFEAMHKW 470
Query: 321 DGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESA 377
DG + L P +KQIAGRAGRY G G VTCL ED+P+L ++ P A
Sbjct: 471 DGETTQVLPTPLIKQIAGRAGRYGLHGQGNAGGVVTCLHEEDMPILRAAMEAPLDQQREA 530
Query: 378 GLFPN-FDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP-- 434
L N + ++ L +++ E + Y F + + +D+
Sbjct: 531 RLHINAAEADPVFQALPRNTTTSAAFEALHHLGRTRPPYLFVLDAKYRRRTEFVDRFAGD 590
Query: 435 LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIF 478
L L E+ +P + +S+ + T Y K +V + +
Sbjct: 591 LTLAERMTLLNAPFQLRGPLSAGVAEEVVTLYRNKFVVWIEAVI 634
>gi|321262547|ref|XP_003195992.1| RNA helicase like protein [Cryptococcus gattii WM276]
gi|317462467|gb|ADV24205.1| RNA helicase like protein, putative [Cryptococcus gattii WM276]
Length = 828
Score = 290 bits (741), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 179/455 (39%), Positives = 257/455 (56%), Gaps = 36/455 (7%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
D T LT + P +R R LH+GPTNSGKT+ AL L +++G Y GPLRLLA EV
Sbjct: 200 DLTRLTHSTDFLP-SRAIKRHFHLHIGPTNSGKTYNALKALSMANTGAYAGPLRLLAHEV 258
Query: 118 AKRLNKANV--------SCDLITGQEREEVD-GAKHRAVTVEMADVV----SDYDCAVID 164
+R+N +V C+L+TG+ER V A + TVEM + + +D VID
Sbjct: 259 WERMNLGSVGGLDGKGRECNLLTGEERRVVHPDAGLLSCTVEMLPLAGLGGAGFDVVVID 318
Query: 165 EIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL 224
EIQMLG RG ++T+A+LG+ A ++HLCGD V L++ ++ GDD+ V Y RL+PL
Sbjct: 319 EIQMLGDGQRGGAWTKAVLGVAAKDIHLCGDETTVDLLRGMIASLGDDLTVHKYNRLTPL 378
Query: 225 VPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQAT 283
N L ++ ++ GDCIVTFSR I+ +KK +ES+ C++VYG+LPPETR QA
Sbjct: 379 SVANESLKNDYTKVEDGDCIVTFSRSNIFEVKKQVESQAGKKCAVVYGALPPETRAEQAR 438
Query: 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
FND +LVASDA+GMGLNL I R+IF ++ KF+G L++ ++KQIAGRAGR+
Sbjct: 439 DFNDEDGASKILVASDAVGMGLNLKIRRVIFESLSKFNGKSEVPLSLMQIKQIAGRAGRF 498
Query: 344 GS--------------KFPV--GEVTCLDSEDLPLLHKSLLEPSPMLESAGL-FPNFDLI 386
+ + P G T L +DLP+L + + P + A L P L+
Sbjct: 499 KTGNDLTKISDIATPDEAPAAGGVATTLAKDDLPILKELMTWSLPSISRAKLEIPTSGLV 558
Query: 387 YMYSRLHPDSSLYG-ILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLH--EKYLF 443
+ S L P S+ Y +L HF AK A + L +A +++ RL E LF
Sbjct: 559 QL-STLLPASTTYAELLSHFSALAKPPSLTVIAAHDHKLPLAELVEPFRDRLSLGEMDLF 617
Query: 444 CISPVDMNDDISSQGLTQFATNYSKKGIVQLREIF 478
C +PV+ D+ + + +Y+++G V + IF
Sbjct: 618 CFAPVNTRDERAKEIFINLIEDYAEEGCVLVDNIF 652
>gi|156846264|ref|XP_001646020.1| hypothetical protein Kpol_1031p69 [Vanderwaltozyma polyspora DSM
70294]
gi|156116691|gb|EDO18162.1| hypothetical protein Kpol_1031p69 [Vanderwaltozyma polyspora DSM
70294]
Length = 752
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 168/400 (42%), Positives = 244/400 (61%), Gaps = 24/400 (6%)
Query: 55 KKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLA 114
KKF+ + P W+P ARK R +I+H+GPTNSGKT++AL RL+ + G Y GPLRLLA
Sbjct: 208 KKFEIPN---PIEWFPEARKMKRTIIMHLGPTNSGKTYRALQRLKQAQRGYYAGPLRLLA 264
Query: 115 WEVAKRLNKANVSCDLITGQER-EEVDG----AKHRAVTVEMADVVSDYDCAVIDEIQML 169
E+ R C+L+TG+E +++ A + TVEM + +D V+DEIQML
Sbjct: 265 REIYDRFRLEGHRCNLLTGEEVITDLNSIGTPAGLTSGTVEMVPLNRQFDVLVLDEIQML 324
Query: 170 GCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-VPLN 228
RG+++T A+LG A+E+HLCG+ + +PLI++I+ +TGD++ V Y+RL L + +
Sbjct: 325 ADPERGWAWTNAVLGARAHEIHLCGEKSVLPLIKKIVDITGDNLIVNEYDRLGKLEIESD 384
Query: 229 VPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDA 288
V +++ GDC+V FS+ I LK IE + KH +++YGSLPPETR +QA FN
Sbjct: 385 VLSRGLRSLRRGDCVVAFSKKTILDLKLKIEKQTKHKVAVIYGSLPPETRLQQANLFN-- 442
Query: 289 SSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-- 346
S E+DVLVASDAIGMGLNL+I RIIF+T KF+G E+ L+ VKQIAGRAGR+ +
Sbjct: 443 SGEYDVLVASDAIGMGLNLSIDRIIFTTDTKFNGREMISLSSSNVKQIAGRAGRFKQENN 502
Query: 347 -----FPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL-IYMYSRLHPDSSLYG 400
VG VT D E L + + L +P +ESA ++P ++ + ++L P + L
Sbjct: 503 GKNGNSTVGYVTSFDKEVLKSVKRGLEQPIEYIESAVIWPTDEINTQILNKLPPKTELSE 562
Query: 401 ILEHFLENAKLSENYFFA-----NCEEVLKVATVIDQLPL 435
+L + K S N F N +++V +D +PL
Sbjct: 563 LLIEISKELKKSSNNMFMLTDLRNRLNLIEVFKEVDGIPL 602
>gi|241951316|ref|XP_002418380.1| ATP-dependent RNA helicase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
gi|223641719|emb|CAX43680.1| ATP-dependent RNA helicase, mitochondrial precursor, putative
[Candida dubliniensis CD36]
Length = 722
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 152/384 (39%), Positives = 240/384 (62%), Gaps = 17/384 (4%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D + P W+P ARK RK+I+HVGPTNSGKT+ +L +L S +G Y GPLRLLA E+ ++
Sbjct: 204 DFSNPAEWFPEARKMKRKIIMHVGPTNSGKTYNSLIKLSKSKTGYYAGPLRLLAREIYEK 263
Query: 121 LNKANVSCDLITGQE-------REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKT 173
N + C+LITG+E +V G + T+EM + D VIDEIQM+
Sbjct: 264 FNSQGIGCNLITGEEVVPSIDKYGKVSGIA--SGTIEMIPLHKKMDLCVIDEIQMISDPL 321
Query: 174 RGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS 233
RG +T A+LG+ A+E+HLCG+ +AVP IQ+++++TGD+++++ ++RL L +
Sbjct: 322 RGSVWTNAVLGVLAHEIHLCGEESAVPFIQKMVKITGDELEIKKFDRLGKLTVEKSSINL 381
Query: 234 FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293
++ GDC+V FS+ I + K IE + ++YG+LPPE R+++A++FN+ E+D
Sbjct: 382 LQ-LKKGDCLVVFSKKKILKYKCDIERNTRLKVGVIYGALPPEIRSQEASKFNNG--EYD 438
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGE-- 351
VLVASDAIGMGLNL I+RI+FS + KF+G L+ L+V +VKQIAGRAGR+ ++ E
Sbjct: 439 VLVASDAIGMGLNLKINRIVFSGVNKFNGSTLQKLSVSQVKQIAGRAGRFSAQHGSKEGF 498
Query: 352 VTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHP-DSSLYGILEHFLENAK 410
VT L L +++ L P + A ++P + Y +P +SL + E+FL N
Sbjct: 499 VTALHRSSLVYINQCLKTPVSEILKASIWPTNGIWRQYMANNPKKNSLSSVYENFLTNVL 558
Query: 411 --LSENYFFANCEEVLKVATVIDQ 432
++N+F + ++ +++ ++ +
Sbjct: 559 KFQNDNFFISELDQKVQLLNLVSK 582
>gi|308451181|ref|XP_003088574.1| hypothetical protein CRE_04454 [Caenorhabditis remanei]
gi|308246503|gb|EFO90455.1| hypothetical protein CRE_04454 [Caenorhabditis remanei]
Length = 691
Score = 289 bits (739), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 154/408 (37%), Positives = 233/408 (57%), Gaps = 31/408 (7%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DLTRPH WYP AR RK+ H GPTNSGKT+ AL R + S ++CGPL+LLA EV
Sbjct: 170 SDLTRPHNWYPEARSITRKIFFHAGPTNSGKTYHALKRFGEAKSAVFCGPLKLLASEVFT 229
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
R N + CDL+TG+ER H + + ++ML + R
Sbjct: 230 RTNALGIPCDLVTGEERRFAKDNHHPSQHLSST-------------VEMLSTQMRV---- 272
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQT 239
E+HLCG+PAA+ +++++L+ G+ V+++ Y+R SPL + + S+SNI+
Sbjct: 273 ---------EIHLCGEPAAIDIVKKLLEPIGETVEIRYYDRKSPLTIADKAIESYSNIEP 323
Query: 240 GDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD 299
GDCIV FS+ A++ K +E G +++YG LPP T+ QA +FND E VLVA+D
Sbjct: 324 GDCIVCFSKKAVFFNSKKLEENGIK-PAVIYGDLPPGTKLAQAAKFNDPDDECSVLVATD 382
Query: 300 AIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359
AIGMGLNLNI R+IF++ + EL L QIAGRAGR+G+ + G T + ED
Sbjct: 383 AIGMGLNLNIRRVIFNSCTR--QTEL--LPTYAALQIAGRAGRFGTAYANGVATTMRKED 438
Query: 360 LPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFAN 419
L L L E + + G+ P +D I +S P +S +L+ F+ +S+++F
Sbjct: 439 LGTLKTILAEKVEPIANVGIAPTYDQIETFSFHLPQASFVRLLDLFVSVCSVSDHFFICT 498
Query: 420 CEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYS 467
++ ++A +IDQ+PL L +Y FC SP++ +D ++ + A ++
Sbjct: 499 VYDMRELAVLIDQVPLPLKVRYTFCTSPLNTDDKRTAAVFVKMARRFA 546
>gi|170085747|ref|XP_001874097.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651649|gb|EDR15889.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 833
Score = 288 bits (736), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 182/481 (37%), Positives = 249/481 (51%), Gaps = 57/481 (11%)
Query: 66 HTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN 125
H YP ARK RKVI+HVGPTNSGKTH AL L +S G+Y GPLRLLA EV +RLN
Sbjct: 193 HEQYPAARKMHRKVIMHVGPTNSGKTHHALRALAASKRGVYAGPLRLLAHEVWERLNLGQ 252
Query: 126 V-----------------------------------SCDLITGQEREEV-DGAKHRAVTV 149
+ C++ITG+E++ V D A + TV
Sbjct: 253 IVPLGMDEPPITLTPTATDDVTPSSPSKSKQTAYARVCNMITGEEQKIVSDDAPLLSCTV 312
Query: 150 EMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT 209
EM + + Y AVIDEIQM+ RG +T A+LGI A ELHLCG+ AVP++Q +L+ T
Sbjct: 313 EMLNFNTRYQIAVIDEIQMIADPQRGSGWTSAVLGILAEELHLCGEETAVPVVQALLKDT 372
Query: 210 GDDVKVQSYERLSPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSI 268
GD+V ++ YERL+PL LG ++ GDCIVTF R +I+ +KK +E + C++
Sbjct: 373 GDEVVIRRYERLTPLKVAETSLGGDLGKVEKGDCIVTFKRSSIFAIKKEVERKTGMKCAV 432
Query: 269 VYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDL 328
VYG LPPE R+ QA FND S +DV+V SDAIGMGLNL I RIIF + K+ + L
Sbjct: 433 VYGRLPPEIRSEQAALFNDPGSGYDVMVGSDAIGMGLNLKIRRIIFECLTKYSAGAFQPL 492
Query: 329 TVPEVKQIAGRAGRYGSKFPV-------GEVTCLDSEDLPLLHKSLLEP-SPMLESAGLF 380
+ ++KQIAGRAGRYG G T L DLP L +L +P P+ + +
Sbjct: 493 STSQIKQIAGRAGRYGQHLSSSSSSSHCGYATTLHPADLPTLSSALSKPFKPVHHAHITY 552
Query: 381 PNFDLIYMYSRLHPDS--SLYGILEHFLENAKLSENYFFANCEEVLKVATVID------Q 432
+ S L P S S +L +L + + +V + +D
Sbjct: 553 STTTFSALRSLLPPSSAGSTKTVLSAHAYIGRLPKFVRYTYDAQVDQACECVDLYGGDAN 612
Query: 433 LPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGLGSLRVAEFPV 492
+ + E+ +PV D++ + +F Y ++ V E G+G L E V
Sbjct: 613 EGMTVRERLKHLSAPVGWRDEVMIGVMARFLGMYKERQEVDYWE----GVGDLGFMECLV 668
Query: 493 G 493
G
Sbjct: 669 G 669
>gi|403221522|dbj|BAM39655.1| ATP-dependent RNA helicase [Theileria orientalis strain Shintoku]
Length = 679
Score = 287 bits (735), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 160/429 (37%), Positives = 254/429 (59%), Gaps = 34/429 (7%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQER 136
RKV +H+GP NSGKTH+A+SRL + +GIYC PLRLLAWE+ RLN++NV C L+TGQE+
Sbjct: 166 RKVYVHIGPPNSGKTHEAISRLSKAKNGIYCSPLRLLAWEMHSRLNRSNVPCALLTGQEK 225
Query: 137 EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDP 196
+ + H + TVEM Y+ AV+DE+QM+G +TRG+++T+A G+ ELH+CG
Sbjct: 226 VD-NNENHISCTVEMVPYERSYEVAVLDEMQMVGDRTRGYAWTKAFWGLKTKELHICGSN 284
Query: 197 AAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKK 256
A + L +++ + GD ++V + RL L L+ + +++ GDC+V FSR+ ++L+
Sbjct: 285 ACLTLARKLADIRGDTLEVYEHARLGKLKVLD-NVVKLESLEPGDCVVCFSRNEAFKLRD 343
Query: 257 AIESR-------------------GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 297
IES + + SIVYGSLPPETR +Q FN+ ++ +L+A
Sbjct: 344 QIESTVYEWDPRDTTIGNTQRKNGDRPITSIVYGSLPPETRCKQIESFNNRDTK--ILIA 401
Query: 298 SDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357
SD IGMG+N++I RIIF+ + K+DG E R L EV+QIAGRAGRYG + GEV+C+
Sbjct: 402 SDVIGMGVNVSIRRIIFNKLTKYDGSESRVLNAAEVQQIAGRAGRYGLECGEGEVSCVRK 461
Query: 358 EDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDS-----SLYGILEHFLENAKLS 412
+DLP+L + + P +E A + P+ ++ ++ + SL + + AK+
Sbjct: 462 KDLPVLKELMSTEPPQIEKAVISPSPEVFEAFNLALNQATGSRHSLSDVTQLITSMAKVG 521
Query: 413 ENYFFANCEEVLKVATVID--QLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKG 470
+N+ + +V VA ++ LP +++ YL V M ++S + +A +++
Sbjct: 522 KNFAMCDFVQVNTVAKCLEGINLPFEVYKHYLL----VPMGSPLTSLVVRAYAASHALLN 577
Query: 471 IVQLREIFT 479
V++ I
Sbjct: 578 KVKISNIIN 586
>gi|72387850|ref|XP_844349.1| RNA helicase [Trypanosoma brucei brucei strain 927/4 GUTat10.1]
gi|62359316|gb|AAX79756.1| RNA helicase, putative [Trypanosoma brucei]
gi|70800882|gb|AAZ10790.1| RNA helicase, putative [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
Length = 626
Score = 287 bits (734), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 170/467 (36%), Positives = 256/467 (54%), Gaps = 28/467 (5%)
Query: 36 GAFASVDVIIRSYCSGSGMKKFDF-TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQA 94
G +++++R + +K + P WYP AR R+ I H GPTNSGKTH A
Sbjct: 85 GDLERINIVLREFGVWYIARKAPLRVTMGEPWDWYPKARFMRRRFIFHHGPTNSGKTHAA 144
Query: 95 LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADV 154
L L + SG+YC P++ LA +V KR+N A+V CDL+ G ER+ GA+H + TVEM +
Sbjct: 145 LEELVKAKSGVYCAPIKALAAQVWKRIN-ASVPCDLLIGDERQFGGGAEHVSCTVEMTPI 203
Query: 155 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD--D 212
D VIDE+QM+G RG+++TRA+LG+ A E+HLCG+ A+PLI+ +L T +
Sbjct: 204 DYQIDVGVIDEVQMIGDGDRGWAWTRAILGLPAREIHLCGEERAIPLIRSLLYKTRELKG 263
Query: 213 VKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGS 272
+++ ++RL+PL G ++ GDC+V FSR I+ +K +E +YGS
Sbjct: 264 LRLVPHQRLAPLRTSAALGGDLRQVENGDCLVCFSRKMIFAMKSQLEKLPGVAAHYIYGS 323
Query: 273 LPPETRTRQATRFNDA--------SSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE 324
+P R QA FN S+ VLV++DAI GLN++I RIIF +MKKFDG +
Sbjct: 324 MPFAVREAQADAFNRGVREAVEGKDSKKHVLVSTDAIAYGLNMSIERIIFVSMKKFDGKQ 383
Query: 325 LRDLTVPEVKQIAGRAGRYG--SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN 382
+ L Q+AGRAGR+G G T L ++D P L ++ L+ AGL P
Sbjct: 384 MTSLPQATTVQVAGRAGRFGVLRANTFGRCTTLHADDFPTLESAINARLSPLQRAGLLPT 443
Query: 383 FDLIYMYSRLH------------PDSSLYGILEHFLENAKLSENYFFAN-CEEVLKVATV 429
D++ +Y ++ P YG ++ F K S+ +F + +L+VA
Sbjct: 444 ADILELYVTMNSDKKRLKTSGVVPQDVFYGHVKDFSSQCKTSDLFFPCDLSRSLLQVARE 503
Query: 430 IDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLR 475
+D +P L L ++ LFC PV+ + + L FA +++ G V+LR
Sbjct: 504 LDAVPGLSLTDRILFCYVPVNTRNKDTFDLLRCFARDHATGGPVRLR 550
>gi|336382398|gb|EGO23548.1| hypothetical protein SERLADRAFT_415998 [Serpula lacrymans var.
lacrymans S7.9]
Length = 1368
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 172/399 (43%), Positives = 240/399 (60%), Gaps = 42/399 (10%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D++R + R RK I+HVGPTNSGKTH AL L ++ +GIY GPLRLLA E+ +R
Sbjct: 807 DVSRASGGTTIRRGLRRKFIMHVGPTNSGKTHHALRALAAAPTGIYAGPLRLLAHEIWER 866
Query: 121 LN--------------------------KANVS----------CDLITGQEREEVD-GAK 143
LN KA+++ C+LITG+E + VD A+
Sbjct: 867 LNLGQIVPAGIEEEAPPASDSAFDVSPEKASLTKVGNPKYARGCNLITGEEVKIVDENAR 926
Query: 144 HRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQ 203
+ TVEM YD AV+DEIQM+G RGF++T A+LG+ A E+HLCG+ AVPL++
Sbjct: 927 LYSCTVEMIKTNMLYDVAVVDEIQMIGDSERGFAWTEAVLGLNAREIHLCGEETAVPLVE 986
Query: 204 QILQVTGDDVKVQSYERLSPLVPLNVPLG-SFSNIQTGDCIVTFSRHAIYRLKKAIESRG 262
+L+ T DD+ V YERL+PL LG + S I+ GDCIVTFSR +I+++K+ +E
Sbjct: 987 AMLRETNDDLVVNRYERLTPLEVEKQSLGGNLSKIRKGDCIVTFSRRSIFQMKRDVEKTM 1046
Query: 263 KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDG 322
C+ VYG LPPE R+ QA FNDA++ FD+L+ SDAIGMGLNL I RII + ++K+
Sbjct: 1047 GVTCATVYGRLPPEVRSEQADLFNDANNGFDILIGSDAIGMGLNLKIRRIIIAQVRKYHD 1106
Query: 323 VELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGL 379
++ L++ KQIAGRAGR+ G + PVG T L+ EDLP L +++ P P L++A +
Sbjct: 1107 NHVQYLSISSTKQIAGRAGRFGLHGKESPVGLTTTLNEEDLPFLTRTMKLPIPSLKTARI 1166
Query: 380 FP-NFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFF 417
P N L+ S L P S++ I +KL+ Y +
Sbjct: 1167 TPSNPSLVATASALPPHSAMNTIFLAHAYTSKLAPTYRY 1205
>gi|449543322|gb|EMD34298.1| hypothetical protein CERSUDRAFT_125481, partial [Ceriporiopsis
subvermispora B]
Length = 806
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 167/417 (40%), Positives = 232/417 (55%), Gaps = 72/417 (17%)
Query: 57 FDFTDLTRPHTWYPLAR-KKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAW 115
F DL +P+ +YP AR + R VI+HVGPTNSGKTH AL L ++ +G+Y GPLRLLA
Sbjct: 205 FRAADLAQPYRFYPRARIGRPRTVIMHVGPTNSGKTHNALRALAAAKTGVYGGPLRLLAA 264
Query: 116 EVAKRLNKANV--------------------------------------------SCDLI 131
E+ +RLN+ + +C++I
Sbjct: 265 EIFERLNRGQIVPAGVDPNADAGAEPDTDSTVDVGDAREAGQVVIRKTGTERYARTCNMI 324
Query: 132 TGQEREEV-DGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANEL 190
TG+E++ + D + TVEM + DYD AV+DEIQ++ RG ++T A+LG+ A EL
Sbjct: 325 TGEEQKFMGDDVGLLSCTVEMTPLNRDYDVAVLDEIQLIADPDRGGAWTAAVLGLNAREL 384
Query: 191 HLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHA 250
HLCG+ AVPLIQ +L+ TGD + V Y+RL+PL LG + ++ GDCIVTFSR
Sbjct: 385 HLCGEETAVPLIQAMLRDTGDRLIVNRYQRLTPLKVAETNLGDLTQLEKGDCIVTFSRKG 444
Query: 251 IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS 310
I +KK +E C++ YG LPPE R QA FND + + +L+ SDAIG+GLNL I
Sbjct: 445 ILNIKKLVEKGTGMQCAVAYGRLPPEIRNEQAALFNDPENNYGILIGSDAIGLGLNLKIK 504
Query: 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG--SKFPVGEVTCLDSEDLPLLHKSLL 368
R+IF +++KFDG +L L V +KQIAGRAGR+G S G VT EDL ++ ++L
Sbjct: 505 RMIFESVRKFDGNKLSPLPVALIKQIAGRAGRFGLHSDDSGGVVTTFAEEDLDIVREAL- 563
Query: 369 EPSPMLE----------------SAGLFPN------FDLIYMYSRLHPDSSLYGILE 403
+PM E S L PN +++ SRLHP SL+ + +
Sbjct: 564 -AAPMGEHKFARMNLSSEIFRAISTALPPNSPSATVLQVMHYVSRLHPRYSLFDMTQ 619
>gi|302655081|ref|XP_003019335.1| hypothetical protein TRV_06616 [Trichophyton verrucosum HKI 0517]
gi|291183051|gb|EFE38690.1| hypothetical protein TRV_06616 [Trichophyton verrucosum HKI 0517]
Length = 766
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 171/442 (38%), Positives = 242/442 (54%), Gaps = 39/442 (8%)
Query: 35 IGAFASVDVIIRSY--------CSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPT 86
+G VD + R Y S + K D P WYP+AR RK+ LHVGPT
Sbjct: 168 MGREGIVDYLRRQYRNHKLDTAFSSTAAKSDSLADFRYPAEWYPVARSMQRKIHLHVGPT 227
Query: 87 NSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGA--KH 144
NSGKT+ AL RLE + SG Y GPLRLLA E+ RLNK +SC LITG E D K
Sbjct: 228 NSGKTYHALQRLEKAKSGFYGGPLRLLAHEIYSRLNKKGISCALITGDEVRVPDSGPVKV 287
Query: 145 RAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQ 204
+ TVEM + + + VIDEIQM+ RG+++TRA+LG A ELHLCG+ AVPLIQ+
Sbjct: 288 YSNTVEMVPIGQEVEVGVIDEIQMIADPHRGWAWTRAVLGCQAQELHLCGEERAVPLIQR 347
Query: 205 ILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGK 263
++ + GD +++ +Y+RL+PL + L G ++ GDCIV FSR I+ LK+ IE
Sbjct: 348 LVSLMGDTLEIHNYKRLNPLKTMASSLKGDIRRLEKGDCIVAFSRVGIHSLKQEIEKATG 407
Query: 264 HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV 323
+IVYGSLP E R +QA FND ++++D LVASDAIGMGLNL
Sbjct: 408 RRAAIVYGSLPAEIRAQQADLFNDPNNDYDFLVASDAIGMGLNL---------------- 451
Query: 324 ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNF 383
Q +G A K VG VTCLD DLP + +++ + L++AG+ P
Sbjct: 452 ---------AAQSSGSANG-NEKENVGLVTCLDEADLPYIRAAMMAEAEPLDAAGILPLD 501
Query: 384 DLIYMYSRLHPDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVATVIDQLP-LRLHEKY 441
+I YS + P + +G + LE ++ +F ++ ++D + L + +K
Sbjct: 502 SVIDNYSNMFPPDTPFGYIYQRLERVSRTDPPFFMCKIQDTEATFGLLDNIQGLNVIDKM 561
Query: 442 LFCISPVDMNDDISSQGLTQFA 463
+F +P+ D + ++ + FA
Sbjct: 562 VFMSAPLRATDPVMARVIKAFA 583
>gi|392567821|gb|EIW60996.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 645
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 179/455 (39%), Positives = 247/455 (54%), Gaps = 54/455 (11%)
Query: 57 FDFTDLTRPHTW-YPLARK-KVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLA 114
F DL+ +TW YPL R+ + RK I+HVGPTNSGKTH AL L ++ GIY GPLRLLA
Sbjct: 38 FRAADLSH-NTWEYPLTRRSRPRKFIMHVGPTNSGKTHNALRALAAAKRGIYAGPLRLLA 96
Query: 115 WEVAKRLNKANV-------------------------------------------SCDLI 131
+E+ RLNK + C+++
Sbjct: 97 YEIFDRLNKGQIVPLGMEPDPEDEPDSQSNIDLGEAAVTGQSVIVTKSGNPKYARPCNMV 156
Query: 132 TGQEREEV-DGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANEL 190
TG+E++ V D A + TVEM + +D AVIDEIQ++ K RG ++T A+LGI A E+
Sbjct: 157 TGEEQKIVSDNAPLLSCTVEMTPHLDTWDVAVIDEIQLIADKNRGGAWTSAVLGINAAEI 216
Query: 191 HLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLG-SFSNIQTGDCIVTFSRH 249
HLCG+ +A+P+I+ I++ GD +++ YERL+PLV LG S +Q GDC V FSR
Sbjct: 217 HLCGEESAIPVIEAIIRDLGDTLEINRYERLTPLVVAEESLGGDLSKVQKGDCAVAFSRT 276
Query: 250 AIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNI 309
I+ +K IE K C++ YG LPPE R QA FND S++DVLV SDAIGMGLNL I
Sbjct: 277 GIFGMKSRIEEENKMRCALAYGRLPPEIRAEQAALFNDPKSDYDVLVGSDAIGMGLNLKI 336
Query: 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKS 366
R+IF + KFDG R ++ ++KQIAGRAGR+ G P G VT L + DL ++ K+
Sbjct: 337 KRVIFEAVAKFDGGRSRVMSSSQIKQIAGRAGRFGMHGDDTPGGVVTTLHAGDLEIVRKA 396
Query: 367 LLEPSPMLESAGLFPNF-DLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLK 425
L P + A + D + + L P S + + F+ +KL + E+
Sbjct: 397 LAAPYEPIRYARISMGLPDFLRVVRALPPGFSQMTVADVFVYVSKLHPRMEYHAVNELET 456
Query: 426 VATVIDQLP--LRLHEKYLFCISPVDMNDDISSQG 458
IDQ L L + L +P DD + +G
Sbjct: 457 CFKFIDQFIDCLTLENRLLAQNAPCPWRDDNAVRG 491
>gi|207340471|gb|EDZ68808.1| YPL029Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259150128|emb|CAY86931.1| Suv3p [Saccharomyces cerevisiae EC1118]
gi|323352061|gb|EGA84600.1| Suv3p [Saccharomyces cerevisiae VL3]
gi|365762858|gb|EHN04391.1| Suv3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 737
Score = 286 bits (732), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 163/427 (38%), Positives = 254/427 (59%), Gaps = 24/427 (5%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D+T P W+P ARK R +I+H+GPTNSGKT++AL +L+S G Y GPLRLLA EV R
Sbjct: 216 DITNPAEWFPEARKIRRHIIMHIGPTNSGKTYRALQKLKSVDRGYYAGPLRLLAREVYDR 275
Query: 121 LNKANVSCDLITGQE-----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ + C+L+TG+E + + A + TVEM + +D V+DEIQM+ RG
Sbjct: 276 FHAEKIRCNLLTGEEVIRDLDDRGNSAGLTSGTVEMVPINQKFDVVVLDEIQMMSDGDRG 335
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS-F 234
+++T ALLG+ + E+HLCG+ + +PL++ I+++TGD + + YERL L P+
Sbjct: 336 WAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTGDKLTINEYERLGKLSVEEKPIKDGI 395
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
++ GDC+V FS+ I LK IE +++YGSLPPETR +QA FN+ E+D+
Sbjct: 396 KGLRKGDCVVAFSKRKILDLKLKIEKDTNLKVAVIYGSLPPETRVQQAALFNNG--EYDI 453
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-----FPV 349
+VASDAIGMGLNL+I R++F+T K++G EL ++T ++KQI GRAGR+ S+ P
Sbjct: 454 MVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSRSASGGVPQ 513
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD----LIYMYSRLHPDSSLYGILEHF 405
G +T +S+ L + K++ P L++A +P + L+ + P S L +
Sbjct: 514 GFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTDEICAQLMTQFPPGTPTSVLLQTISDE 573
Query: 406 LENAKLSENYF-FANCEEVLKVATVIDQLP-LRLHEKYLFCISPV-DMNDDISSQGLTQF 462
LE K S+N F ++ + LKV + + + + +K +PV DM + ++ T+F
Sbjct: 574 LE--KSSDNLFTLSDLKSKLKVIGLFEHMEDIPFFDKLKLSNAPVKDM--PMVTKAFTKF 629
Query: 463 ATNYSKK 469
+K+
Sbjct: 630 CETIAKR 636
>gi|167519643|ref|XP_001744161.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777247|gb|EDQ90864.1| predicted protein [Monosiga brevicollis MX1]
Length = 304
Score = 285 bits (728), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 145/304 (47%), Positives = 202/304 (66%), Gaps = 1/304 (0%)
Query: 65 PHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKA 124
PH YP ARK R++I+H GPTNSGKT+ A+ ++ + ++C PLRLLAWE +RL
Sbjct: 1 PHLTYPEARKCRRRIIIHRGPTNSGKTYGAMQAAAAAKTAMFCAPLRLLAWEQYERLRNG 60
Query: 125 NVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLG 184
+ +L+TGQE A H A TVEM D YD AVIDE Q +G RG+++T A+LG
Sbjct: 61 HQRAELLTGQEMYTCADATHLACTVEMTDFSRHYDVAVIDECQNIGSAERGWAWTNAILG 120
Query: 185 ICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIV 244
A+ L+L D +A L+Q I +V GDDV+V ++RL+PL PL +FS+++ GDC++
Sbjct: 121 ARADVLYLIEDGSATQLLQNIAKVCGDDVEVIDHQRLAPLHVQREPLINFSHLREGDCLI 180
Query: 245 TFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMG 304
F+R ++ LK E+ C++VYG+LPP+ R QAT FND S++ +L ASDAIGMG
Sbjct: 181 GFNRRELFNLKAQAEAATGLKCAVVYGALPPDVRKAQATLFNDPHSDYKLLAASDAIGMG 240
Query: 305 LNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV-GEVTCLDSEDLPLL 363
LN +I R+IFST+ KFDG + R L E++QIAGRAGRYGS++ V GEV + D +L
Sbjct: 241 LNFDIGRVIFSTVWKFDGTQRRVLRPTELRQIAGRAGRYGSRYAVGGEVLAMSESDTEVL 300
Query: 364 HKSL 367
++L
Sbjct: 301 QRAL 304
>gi|302495911|ref|XP_003009969.1| hypothetical protein ARB_03895 [Arthroderma benhamiae CBS 112371]
gi|291173491|gb|EFE29324.1| hypothetical protein ARB_03895 [Arthroderma benhamiae CBS 112371]
Length = 796
Score = 284 bits (727), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 170/442 (38%), Positives = 242/442 (54%), Gaps = 39/442 (8%)
Query: 35 IGAFASVDVIIRSY--------CSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPT 86
+G VD + R Y S + K D P WYP+AR RK+ LHVGPT
Sbjct: 164 MGREGIVDYLRRQYRNHKLDTAFSSTATKSDSLADFRYPAEWYPVARSMQRKIHLHVGPT 223
Query: 87 NSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE--EVDGAKH 144
NSGKT+ AL RLE + SG Y GPLRLLA E+ RLNK +SC LITG E E K
Sbjct: 224 NSGKTYHALQRLEKAKSGFYGGPLRLLAHEIYSRLNKKGISCALITGDEVRVPESGPVKV 283
Query: 145 RAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQ 204
+ TVEM + + + VIDEIQM+ RG+++TRA+LG A ELHLCG+ AVPLIQ+
Sbjct: 284 YSNTVEMVPIGQEVEVGVIDEIQMIADPHRGWAWTRAVLGCQAQELHLCGEERAVPLIQR 343
Query: 205 ILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGK 263
++ + GD +++ +Y+RL+PL + L G ++ GDCIV FSR I+ LK+ IE
Sbjct: 344 LVSLMGDTLEIHNYKRLNPLKTMTSSLKGDIRRLEKGDCIVAFSRVGIHSLKQEIEKATG 403
Query: 264 HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV 323
+IVYGSLP E R +QA FND ++++D LVASDAIGMGLNL + +G
Sbjct: 404 RRAAIVYGSLPAEIRAQQADLFNDPNNDYDFLVASDAIGMGLNLAA-----QSSSSTNGN 458
Query: 324 ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNF 383
E K VG VTCLD DLP + +++ + L++AG+ P
Sbjct: 459 E---------------------KENVGLVTCLDEADLPYIRAAMMAEAEPLDAAGILPLD 497
Query: 384 DLIYMYSRLHPDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVATVIDQLP-LRLHEKY 441
+I YS + P + +G + LE ++ +F ++ ++D + L + +K
Sbjct: 498 SVIDNYSNMFPPDTPFGYIYQRLERVSRTDPPFFMCKIQDTEATFGLLDNIQGLNVIDKM 557
Query: 442 LFCISPVDMNDDISSQGLTQFA 463
+F +P+ D + ++ + FA
Sbjct: 558 VFMSAPLRATDPVMARVIKAFA 579
>gi|261327511|emb|CBH10486.1| RNA helicase, putative [Trypanosoma brucei gambiense DAL972]
Length = 626
Score = 284 bits (726), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 169/467 (36%), Positives = 255/467 (54%), Gaps = 28/467 (5%)
Query: 36 GAFASVDVIIRSYCSGSGMKKFDF-TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQA 94
G +++++R + +K + P WYP AR R+ I H GPTNSGKTH A
Sbjct: 85 GDLERINIVLREFGVWYIARKAPLRVTMGEPWDWYPKARFMRRRFIFHHGPTNSGKTHAA 144
Query: 95 LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADV 154
L L + SG+YC P++ LA +V KR+N A+V CDL+ G ER+ GA+H + TVEM +
Sbjct: 145 LEELVKAKSGVYCAPIKALAAQVWKRIN-ASVPCDLLIGDERQFGGGAEHVSCTVEMTPI 203
Query: 155 VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD--D 212
D VIDE+QM+G RG+++TRA+LG+ A E+HLCG+ A+PLI+ +L T +
Sbjct: 204 DYQIDVGVIDEVQMIGDGDRGWAWTRAILGLPAREIHLCGEERAIPLIRSLLYKTRELKG 263
Query: 213 VKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGS 272
+++ ++RL+PL G ++ GDC+V FSR I+ +K +E +YGS
Sbjct: 264 LRLVPHQRLAPLRTSAALGGDLRQVENGDCLVCFSRKMIFAMKSQLEKLPGVAAHYIYGS 323
Query: 273 LPPETRTRQATRFNDA--------SSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE 324
+P R QA FN S+ VLV++DAI GLN++I RIIF +MKKFDG +
Sbjct: 324 MPFAVREAQADAFNRGVREAVEGKDSKKHVLVSTDAIAYGLNMSIERIIFVSMKKFDGKQ 383
Query: 325 LRDLTVPEVKQIAGRAGRYG--SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN 382
+ L Q+AGRAGR+G G T L ++D P L ++ L+ AGL P
Sbjct: 384 MTSLPQATTVQVAGRAGRFGVLRANTFGRCTTLHADDFPTLESAINARLSPLQRAGLLPT 443
Query: 383 FDLIYMYSRLH------------PDSSLYGILEHFLENAKLSENYFFAN-CEEVLKVATV 429
D++ +Y ++ P YG ++ F K S+ +F + +L+VA
Sbjct: 444 ADILELYVTMNSDKKRLKTSGVVPQDVFYGHVKDFSSQCKTSDLFFPCDLSRSLLQVARE 503
Query: 430 IDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLR 475
+D + L L ++ LFC PV+ + + L FA +++ G V+LR
Sbjct: 504 LDAVTGLSLTDRILFCYVPVNTRNKDTFDLLRCFARDHATGGPVRLR 550
>gi|444319274|ref|XP_004180294.1| hypothetical protein TBLA_0D02720 [Tetrapisispora blattae CBS 6284]
gi|387513336|emb|CCH60775.1| hypothetical protein TBLA_0D02720 [Tetrapisispora blattae CBS 6284]
Length = 758
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 161/402 (40%), Positives = 242/402 (60%), Gaps = 16/402 (3%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D++ P W+P ARK R ++LH+GPTNSGKT++AL L+SS +G Y GPLRLLA EV R
Sbjct: 211 DISNPAEWFPEARKLKRTIVLHLGPTNSGKTYRALQTLKSSGNGYYAGPLRLLAREVYDR 270
Query: 121 LNKANVSCDLITGQER-EEVDGAKHRA----VTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
C+L+TG+E +++D + A T+EM + ++D AV DEIQM+ RG
Sbjct: 271 FKAEGFRCNLLTGEEVIQDLDKMGNPAGITSGTIEMVPLHRNFDIAVFDEIQMMADPDRG 330
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSF 234
+++T ALLG+ A E+HLCG+ +A+PL+++++++TGD++ + YERL L PL +F
Sbjct: 331 WAWTIALLGVQAREVHLCGEKSALPLLKELVKMTGDNLVINEYERLGKLTVEKNPLNNNF 390
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
+ ++ GDCIV FS+ I LK IE R K ++VYGSLPPETR +QA FN S +DV
Sbjct: 391 ALLEKGDCIVAFSKKKILDLKLEIEKRTKLKVAVVYGSLPPETRIQQANLFN--SGTYDV 448
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV----G 350
+VASDAIGMGLNL I R++F+T KF+G E+ LT +KQI GRAGR+ + G
Sbjct: 449 VVASDAIGMGLNLAIRRVVFTTNMKFNGKEMESLTSSNIKQIGGRAGRFKADCNKEDIRG 508
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEH---FLE 407
+T D L ++ + P L + ++P ++ + P +L L L
Sbjct: 509 YITATDRYVLASVNNGIEAPIEYLTACCIWPTDEICNNIMKQLPSGTLMSELFEKISILL 568
Query: 408 NAKLSENYFFANCEEVLKVATVIDQL-PLRLHEKYLFCISPV 448
+ K ++ + ++ LKV +++L + EK C +P+
Sbjct: 569 DKKYNKFFKLSDLSNKLKVIKTMEKLNNISFSEKLRLCNAPM 610
>gi|340053225|emb|CCC47513.1| putative RNA helicase, fragment, partial [Trypanosoma vivax Y486]
Length = 623
Score = 283 bits (723), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 168/469 (35%), Positives = 265/469 (56%), Gaps = 30/469 (6%)
Query: 35 IGAFASVDVIIRSYCSGSGMKKF-DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQ 93
+ + +D++++++ + +K + P WYP AR R+ + H GPTNSGKTH
Sbjct: 97 VTSLERIDIVMKNFVAWYIARKAPQKVTMHEPWNWYPKARFMRRRFVYHYGPTNSGKTHA 156
Query: 94 ALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMAD 153
AL L + SG+YC PL+ LA +V K ++ V CDL+ G ER GA+H + TVEM
Sbjct: 157 ALEELVKAKSGVYCAPLKALAAQVWKYID-TKVPCDLLIGDERRFGGGAEHVSCTVEMTP 215
Query: 154 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD-- 211
+ D VIDE+QM+ + RG+++TRALLG+ A E+HLCG+ A+PL++ +L T +
Sbjct: 216 IDYQVDIGVIDEVQMISERDRGWAWTRALLGLPAREIHLCGEERAIPLVRNLLYKTRELS 275
Query: 212 DVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYG 271
+++ S++RL PL + G ++ GDC+V FSR +I+ K +E + +YG
Sbjct: 276 GLRLVSHKRLVPLDICSSLNGDLKQVENGDCLVCFSRKSIFGFKSKLEKTPGVVPHYIYG 335
Query: 272 SLPPETRTRQATRFNDA--------SSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV 323
S+P R QA FN+ SS+ VL+++DAI GLN+ I R++F+TMKKFDG
Sbjct: 336 SMPFSVREAQAQAFNNGVNSVVHGVSSQKHVLISTDAIAYGLNMGIERVVFTTMKKFDGK 395
Query: 324 ELRDLTVPEVKQIAGRAGRYG--SKFPVGEVTCLDSEDLPLLHKSLLE-PSPMLESAGLF 380
E + L+ Q+AGRAGR+G P+G T L ++DLPLL + P+P L+ AGL
Sbjct: 396 ETKTLSQATTVQVAGRAGRFGVSRTKPLGLCTTLHADDLPLLKDAFSGLPAP-LQKAGLL 454
Query: 381 PNFDLIYMYSRLH-----------PDSS-LYGILEHFLENAKLSENYFFAN-CEEVLKVA 427
P D++ +Y ++ PDSS Y ++ F + + S+ +F + +L++A
Sbjct: 455 PTADILELYVGMNSTTKAAVDVGIPDSSAFYERIKDFARHCQSSDLFFPCDISRSLLEIA 514
Query: 428 TVIDQL-PLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLR 475
V++ + L L ++ LFC P+ + L FA ++ V+LR
Sbjct: 515 RVLESVHDLTLSDRILFCYVPLSDRSSATLNLLRAFAQEHAAGNPVRLR 563
>gi|422294926|gb|EKU22226.1| atp-dependent rna helicase [Nannochloropsis gaditana CCMP526]
Length = 1027
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 142/292 (48%), Positives = 191/292 (65%), Gaps = 7/292 (2%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWE 116
D+ PH WYP AR RK+I H GPTNSGKT+ AL RL+ + G+Y GPLRLLA E
Sbjct: 326 DMRLPHDWYPYARLMRRKIIYHAGPTNSGKTYHALQRLKMADPAKGGGLYLGPLRLLALE 385
Query: 117 VAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGF 176
+ LN+ V C L+TGQE+ + + H + TVEM + DYD AV+DEIQM+G RG
Sbjct: 386 IYDTLNEEGVYCSLLTGQEKRLIPFSDHTSATVEMCSLRQDYDVAVLDEIQMIGDPERGH 445
Query: 177 SFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSN 236
++TRALLG+ A E+HLCG P AV ++ ++ Q TGDD++++ YER++ L + PL +S
Sbjct: 446 AWTRALLGLRAKEIHLCGGPEAVEVVSRLCQATGDDLEIRKYERMTELTIASEPLLDYSK 505
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296
+ GDCIV FS+ I +K+ IE++ H C +VYGSLP ETR+ QA FN+ + FDVLV
Sbjct: 506 VMVGDCIVAFSKSDICSIKQEIEAKTSHKCCMVYGSLPSETRSAQAGIFNEEGTGFDVLV 565
Query: 297 ASDAIGMGLNLNISRIIFSTMKKFD---GVELRDLTVPEVKQIAGRAGRYGS 345
A+DAIGMGLNLNI RIIF ++ K G E+ + + RAG + S
Sbjct: 566 ATDAIGMGLNLNIRRIIFHSLIKVSDEGGAEVLHSGLGTATEQIARAGLFPS 617
>gi|254577005|ref|XP_002494489.1| ZYRO0A02706p [Zygosaccharomyces rouxii]
gi|238937378|emb|CAR25556.1| ZYRO0A02706p [Zygosaccharomyces rouxii]
Length = 738
Score = 281 bits (719), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 149/336 (44%), Positives = 216/336 (64%), Gaps = 15/336 (4%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
D D++ P W+ ARK R +I+H+GPTNSGKT++AL +L+ ++ G Y GPLRLLA E+
Sbjct: 208 DDVDISNPVEWFAEARKMKRHIIMHIGPTNSGKTYRALQQLKHANRGYYAGPLRLLAREI 267
Query: 118 AKRLNKANVSCDLITGQER-EEVDGAKHRA----VTVEMADVVSDYDCAVIDEIQMLGCK 172
R K V C+L+TG+E ++D A + A TVEM + D+D V+DEIQM+
Sbjct: 268 YDRFQKDGVRCNLLTGEEVIHDLDSAGNPAGLTSGTVEMVPLTQDFDVVVLDEIQMMADL 327
Query: 173 TRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLN--VP 230
RG++++ ALLG A E+H+CG+ + +PLI+ I+++TGD + V YERL L + +P
Sbjct: 328 DRGWAWSNALLGAKAREVHVCGEKSTLPLIKNIIKMTGDKLTVNEYERLGKLKVEDWVLP 387
Query: 231 LGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASS 290
G + +++ GDC+V FS+ I LK IE +++YGSLPPETR +QA FN S
Sbjct: 388 KG-YKSLRKGDCVVAFSKKRILDLKLRIEKDTNLKVAVIYGSLPPETRIQQAHLFN--SG 444
Query: 291 EFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY-----GS 345
E+D++VASDAIGMGLNL+I R+IF+T KF+G EL +L+ +KQI GRAGR+ G
Sbjct: 445 EYDIMVASDAIGMGLNLSIDRVIFTTDVKFNGKELVELSSSNIKQIGGRAGRFKSGSQGQ 504
Query: 346 KFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFP 381
P G +T D L + + + P L+SA ++P
Sbjct: 505 DIPQGFITTFDPSVLSTIRRGMDAPIDYLQSAVIWP 540
>gi|312069312|ref|XP_003137623.1| hypothetical protein LOAG_02037 [Loa loa]
Length = 683
Score = 280 bits (717), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 147/332 (44%), Positives = 213/332 (64%), Gaps = 10/332 (3%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+DLT+P+ WYP AR+ R++ H GPTNSGKT++AL + + +G YC PLRLLA EV
Sbjct: 234 LSDLTKPYNWYPKARELFRRIHFHAGPTNSGKTYEALQQFYRAKTGFYCCPLRLLANEVC 293
Query: 119 KRLNKANVSCDLITGQERE-EVDG---AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
++ N+ + CD++TG+ER VD + H A+TVEM V + + AVIDEIQML ++R
Sbjct: 294 QKTNEQGIKCDMVTGEERRYAVDADSPSSHVAMTVEMVPVDVNVEVAVIDEIQMLRDQSR 353
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TRALLGI A E+HLCG+ AAV +++ +L G+ V+V YER +PL L
Sbjct: 354 GWAWTRALLGIAAEEIHLCGEEAAVDIVRGLLDPIGEHVEVHRYERKTPLTVNKEALKKL 413
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N++ GDC+V FS ++ + K + G +++YG+LPP T+ QA FN+ S + +V
Sbjct: 414 DNVKDGDCLVCFSVSMLFSVAKTLMKLGVQ-PTVIYGALPPWTKLNQAKTFNEMSRKPNV 472
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 354
+VA+DA+GMGLNLNI RIIF +F E + V Q+AGRAGR+ S + G VT
Sbjct: 473 MVATDAVGMGLNLNIRRIIFV---QFPFGEHQ--ANYHVMQVAGRAGRFQSAYQKGWVTT 527
Query: 355 LDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI 386
L D+PLL + EP +E+AG+ P + +
Sbjct: 528 LRPADMPLLEAFMKEPIKPIETAGIAPTSEQV 559
>gi|353234529|emb|CCA66553.1| related to SUV3-ATP-dependent RNA helicase, mitochondrial
[Piriformospora indica DSM 11827]
Length = 762
Score = 280 bits (717), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 162/389 (41%), Positives = 234/389 (60%), Gaps = 18/389 (4%)
Query: 62 LTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL 121
LT P +P AR+ RK+ILHVGPTNSGKT+ AL L + G Y GPLRLLA E+ RL
Sbjct: 211 LTHPAELHPAARQVQRKIILHVGPTNSGKTYHALRALAGAQYGCYAGPLRLLATEIFGRL 270
Query: 122 NKANVS-------------CDLITGQEREEVDG-AKHRAVTVEMADVVSDYDCAVIDEIQ 167
N +++ C+LITG++ + +D A + TVEM + +D VIDEIQ
Sbjct: 271 NNGDIAPTGADPTKKYPRVCNLITGEDVKILDDEAGLISATVEMVPLTRKFDVVVIDEIQ 330
Query: 168 MLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPL 227
M+ RG ++T+ALLG+ A E+HLCG+ +AV LI+++++ GD+V V YERL+PL
Sbjct: 331 MIANSERGGAWTQALLGLNAEEIHLCGEESAVELIKELVKPAGDEVIVNRYERLTPLQIA 390
Query: 228 NVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFN 286
LG+ ++I+ GDCIV FSR +I+ LK IES+ C+++YG LPPE R QA +FN
Sbjct: 391 PKSLGNNLADIRPGDCIVAFSRKSIFGLKHLIESKTGLRCAVIYGKLPPEVRVDQAAKFN 450
Query: 287 DASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG-- 344
+ VL+ASDAIGMGLNL I R++FST+KK+DG + +++ E+KQIAGRAGRYG
Sbjct: 451 AGDVDHSVLIASDAIGMGLNLKIKRVLFSTLKKWDGYKNVTISLSEIKQIAGRAGRYGLH 510
Query: 345 SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEH 404
VG T ++ +L ++ L+ A + + + R P S+ G L
Sbjct: 511 DADSVGIATTFLHQEHQILASAMSNDVRELKYATIAADSVWLGRLHRTLPPSTGLGELFQ 570
Query: 405 FLENAKLSENYF-FANCEEVLKVATVIDQ 432
L++ + + F + ++L A ID+
Sbjct: 571 LLQDVAICDAPFSITDYSKLLDAAYTIDE 599
>gi|366991679|ref|XP_003675605.1| hypothetical protein NCAS_0C02490 [Naumovozyma castellii CBS 4309]
gi|342301470|emb|CCC69239.1| hypothetical protein NCAS_0C02490 [Naumovozyma castellii CBS 4309]
Length = 739
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 164/393 (41%), Positives = 237/393 (60%), Gaps = 23/393 (5%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
+++ P W+ ARK R +I+H+GPTNSGKT++AL +L+++ SG Y GPLRLLA E+ R
Sbjct: 218 NISNPAEWFSEARKIRRHIIMHIGPTNSGKTYKALQKLKTAESGYYAGPLRLLAREIYDR 277
Query: 121 LNKANVSCDLITGQE--REEVD---GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ C+L+TG+E R+ D AK + TVEM + +D V+DEIQM+ + RG
Sbjct: 278 FKSEGIRCNLLTGEEVIRDLDDMGNSAKLTSGTVEMVPLNKKFDIVVLDEIQMMSDEDRG 337
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++T ALLG A E+HLCG+ + +PL+++I+++TGD + + YERL LNV S
Sbjct: 338 WAWTNALLGAQAREVHLCGEKSTLPLVRKIVEMTGDQLTINEYERLG---GLNVEKKSIK 394
Query: 236 N----IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSE 291
++ GDCIV FS+ I LK IE++ +++YGSLPPETR +QA FN S E
Sbjct: 395 TKLKGLERGDCIVAFSKKKILDLKLEIEAKTDMKVAVIYGSLPPETRVQQANLFN--SGE 452
Query: 292 FDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK---FP 348
D+LVASDAIGMGLNL+I RIIFST KF+G EL +L+ +KQI GRAGR+ S P
Sbjct: 453 ADILVASDAIGMGLNLSIDRIIFSTDLKFNGKELINLSSSNIKQIGGRAGRFKSHDEDRP 512
Query: 349 VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN----FDLIYMYSRLHPDSSLYGILEH 404
G ++ DS L + + + P L+SA ++P L+ + P S L L
Sbjct: 513 TGYISSFDSAVLQSVKEGIEAPIEYLKSAVIWPTDKICEQLLMRFPPGTPPSVLLQTLSD 572
Query: 405 FLENA--KLSENYFFANCEEVLKVATVIDQLPL 435
LE K+ + + EV+K+ +D +P
Sbjct: 573 QLEKGSKKIFKVSNLKDKFEVIKIFEHMDDIPF 605
>gi|392580456|gb|EIW73583.1| hypothetical protein TREMEDRAFT_12580, partial [Tremella
mesenterica DSM 1558]
Length = 710
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 175/465 (37%), Positives = 255/465 (54%), Gaps = 43/465 (9%)
Query: 57 FDFTDLTR-PHTW-YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLA 114
D TD++ P + Y AR R LH+GPTNSGKT+ AL L + +G Y GPLRLLA
Sbjct: 127 LDVTDISHLPFSGEYISARSMSRHFHLHIGPTNSGKTYSALKALSRAGTGAYAGPLRLLA 186
Query: 115 WEVAKRLNKANV--------SCDLITGQEREEVD-GAKHRAVTVEMADVV----SDYDCA 161
EV +RLN V C+L+TG+ER VD A + TVEM + S YD
Sbjct: 187 HEVWERLNLGTVGDMNGKGRECNLVTGEERRIVDPDAGLISCTVEMLPISGPLGSPYDVV 246
Query: 162 VIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQIL-QVTGDDVKVQSYER 220
V+DEIQM+G RG ++T ++ + A+E+HLCGD V L+++++ GD + V Y+R
Sbjct: 247 VVDEIQMMGDPQRGSAWTNVVMKLRAHEIHLCGDETTVGLLKRMVASFGGDQLTVHRYDR 306
Query: 221 LSPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRT 279
L+PL + LGS + ++ GDC+VTFSR I+ +++ +ES K C++VYG+LPPETR
Sbjct: 307 LTPLTVADKSLGSSYKGVRKGDCVVTFSRSGIFYVRREVESFAKKKCAMVYGALPPETRA 366
Query: 280 RQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGR 339
QA FND + +VLVASDA+GMGLNL I R+IFS++ KF+G + L++ ++KQIAGR
Sbjct: 367 EQARDFNDENGRAEVLVASDAVGMGLNLKIKRMIFSSLHKFNGKQDVPLSLTQIKQIAGR 426
Query: 340 AGRYGSKFPV-----------------------GEVTCLDSEDLPLLHKSLLEPSPMLES 376
AGR+G G VT DLP+L L +P P +
Sbjct: 427 AGRFGMSTTTPDPHATPQLDLPSIAPDEKPSEGGIVTTFHESDLPILRSLLHQPLPPITR 486
Query: 377 AGL-FPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQL-- 433
A L P ++ + + L P++ +L+H + N + + L +A V+++
Sbjct: 487 ATLDVPFENMSALAALLPPETKFSELLDHVYSLVLVPPNMTLGSMQHKLPLAKVVEEFRS 546
Query: 434 PLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIF 478
L L E L +PV+ D + A+ Y+ G V L +F
Sbjct: 547 GLTLSEMDLLTYAPVNGRDPRALGVYHSLASTYASVGHVTLDNMF 591
>gi|156087308|ref|XP_001611061.1| ATP-dependent RNA helicase [Babesia bovis T2Bo]
gi|154798314|gb|EDO07493.1| ATP-dependent RNA helicase, putative [Babesia bovis]
Length = 678
Score = 278 bits (711), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 162/399 (40%), Positives = 228/399 (57%), Gaps = 18/399 (4%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
DLTRP Y R RKVI H+GP NSGKT++A RL + SG+YC PLRLLAWE+
Sbjct: 151 LADLTRPLEGYQ-PRSFRRKVIAHLGPPNSGKTYEAHLRLLGAKSGVYCAPLRLLAWEMQ 209
Query: 119 KRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSF 178
+RL + C L+TGQ+ H A TVEM + DY CAVIDE+QM+G RGF++
Sbjct: 210 QRLQDEGIQCSLLTGQDVSITTKDTHMACTVEMTQLNRDYGCAVIDEMQMIGDSNRGFAW 269
Query: 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQ 238
TRA LG+ ELH+CG + L + + GD ++V+ + RL + L+ P+ S++
Sbjct: 270 TRAFLGLRTPELHICGSTSCYLLAKSFCNMAGDLLEVKEHTRLGTVSILDEPV-KISDLL 328
Query: 239 TGDCIVTFSRHAIYRLKKAIESR-----GKHLCS--IVYGSLPPETRTRQATRFNDASSE 291
GDCIV F+R+ R+ AIE + G S ++YGSLPPETR +Q FN S +
Sbjct: 329 PGDCIVCFARNTALRIATAIERQCFKNDGSKPASTVVIYGSLPPETRKQQINDFN--SRK 386
Query: 292 FDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGE 351
+LVASD IGMG+N+ I R+IF ++ K+DG R LT EV+QIAGRAGRY G
Sbjct: 387 KQILVASDVIGMGVNVRIKRVIFHSLTKYDGSRYRMLTAAEVQQIAGRAGRYSLNCGNGY 446
Query: 352 VTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY-----SRLHPDSSLYGILEHFL 406
V C +D+ L + + LESA + P+ D + + P +L ++ +
Sbjct: 447 VGCTREDDIVHLKRLMRRKEDQLESAYIAPSTDTLSAFIDAVRGVTDPPGTLSECIKIYR 506
Query: 407 ENAKLSENYFFANCEEVLKVATVIDQ--LPLRLHEKYLF 443
A+ ++ + + + +LKVA + Q LP R +YLF
Sbjct: 507 SMAQSTQMFKLLDMKSILKVANALSQIELPTRTIVEYLF 545
>gi|401623187|gb|EJS41293.1| suv3p [Saccharomyces arboricola H-6]
Length = 737
Score = 278 bits (710), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 161/425 (37%), Positives = 255/425 (60%), Gaps = 20/425 (4%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D+T P W+ ARK R +I+H+GPTNSGKT++AL +L+S G Y GPLRLLA EV R
Sbjct: 216 DITNPAEWFSEARKIRRHIIMHIGPTNSGKTYKALQKLKSVDRGYYAGPLRLLAREVYDR 275
Query: 121 LNKANVSCDLITGQE-----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
V C+L+TG+E ++ + A + TVEM + +D V+DEIQM+ RG
Sbjct: 276 FQNEKVRCNLLTGEEVIRDLDDKGNPAGLTSGTVEMVPLNQKFDVVVLDEIQMMSDADRG 335
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSF 234
+++T ALLG+ + E+HLCG+ + +PLI+ I+++TGD + + YERL L + P+ G
Sbjct: 336 WAWTNALLGVVSKEVHLCGEKSVLPLIKNIVKMTGDKLTINEYERLGKLSVEDNPVKGGI 395
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
++ GDC+V FS+ I LK IE +++YGSLPPETR +QA+ FN+ E+D+
Sbjct: 396 KGLRKGDCVVAFSKKKILDLKLKIEKDTNLKVAVIYGSLPPETRVQQASLFNNG--EYDI 453
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV-- 352
+VASDAIGMGLNL+I R++F+T K++G EL ++T ++KQI GRAGR+ SK P G+V
Sbjct: 454 MVASDAIGMGLNLSIDRVVFTTDMKYNGEELMEMTSSQIKQIGGRAGRFKSKSPSGDVPQ 513
Query: 353 ---TCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL-IYMYSRLHPDSSLYGILEHFLEN 408
T +S L + K++ P L +A +P ++ + ++ P + +L+ +
Sbjct: 514 GFITSFESRVLKSVRKAIEAPVEYLRTAVTWPTDEICAQLMTQFPPGTPASVLLQTIADE 573
Query: 409 AKLSENYFF--ANCEEVLKVATVIDQLP-LRLHEKYLFCISPV-DMNDDISSQGLTQFAT 464
+ S + F ++ + LKV + + + + +K +PV DM + ++ T+F
Sbjct: 574 LEKSSDKLFTLSDLKNKLKVIALFEHMEDIPFLDKLKLSNAPVKDM--PMVTKAFTKFCE 631
Query: 465 NYSKK 469
+K+
Sbjct: 632 TIAKR 636
>gi|349581785|dbj|GAA26942.1| K7_Suv3ap, partial [Saccharomyces cerevisiae Kyokai no. 7]
Length = 608
Score = 277 bits (709), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 155/389 (39%), Positives = 237/389 (60%), Gaps = 20/389 (5%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D+T P W+P ARK R +I+H+GPTNSGKT++AL +L+S G Y GPLRLLA EV R
Sbjct: 216 DITNPAEWFPEARKIRRHIIMHIGPTNSGKTYRALQKLKSVDRGYYAGPLRLLAREVYDR 275
Query: 121 LNKANVSCDLITGQE-----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ + C+L+TG+E + + A + TVEM + +D V+DEIQM+ RG
Sbjct: 276 FHAEKIRCNLLTGEEVIRDLDDRGNSAGLTSGTVEMVPINQKFDVVVLDEIQMMSDGDRG 335
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS-F 234
+++T ALLG+ + E+HLCG+ + +PL++ I+++TGD + + YERL L P+
Sbjct: 336 WAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTGDKLTINEYERLGKLSVEEKPIKDGI 395
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
++ GDC+V FS+ I LK IE +++YGSLPPETR +QA FN+ E+D+
Sbjct: 396 KGLRKGDCVVAFSKKKILDLKLKIEKDTNLKVAVIYGSLPPETRVQQAALFNNG--EYDI 453
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-----FPV 349
+VASDAIGMGLNL+I R++F+T K++G EL ++T ++KQI GRAGR+ S+ P
Sbjct: 454 MVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSRSASGGVPQ 513
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD----LIYMYSRLHPDSSLYGILEHF 405
G +T +S+ L + K++ P L++A +P + L+ + P S L +
Sbjct: 514 GFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTDEICAQLMTQFPPGTPTSVLLQTISDE 573
Query: 406 LENAKLSENYF-FANCEEVLKVATVIDQL 433
LE K S+N F ++ + LKV + + +
Sbjct: 574 LE--KSSDNLFTLSDLKSKLKVIGLFEHM 600
>gi|323302785|gb|EGA56591.1| Suv3p [Saccharomyces cerevisiae FostersB]
Length = 648
Score = 277 bits (709), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 163/427 (38%), Positives = 254/427 (59%), Gaps = 24/427 (5%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D+T P W+P ARK R +I+H+GPTNSGKT++AL +L+S G Y GPLRLLA EV R
Sbjct: 127 DITNPAEWFPEARKIRRHIIMHIGPTNSGKTYRALQKLKSVDRGYYAGPLRLLAREVYDR 186
Query: 121 LNKANVSCDLITGQE-----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ + C+L+TG+E + + A + TVEM + +D V+DEIQM+ RG
Sbjct: 187 FHAEKIRCNLLTGEEVIRDLDDRGNSAGLTSGTVEMVPINQKFDVVVLDEIQMMSDGDRG 246
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS-F 234
+++T ALLG+ + E+HLCG+ + +PL++ I+++TGD + + YERL L P+
Sbjct: 247 WAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTGDKLTINEYERLGKLSVEEKPIKDGI 306
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
++ GDC+V FS+ I LK IE +++YGSLPPETR +QA FN+ E+D+
Sbjct: 307 KGLRKGDCVVAFSKKKILDLKLKIEKDTNLKVAVIYGSLPPETRVQQAALFNNG--EYDI 364
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-----FPV 349
+VASDAIGMGLNL+I R++F+T K++G EL ++T ++KQI GRAGR+ S+ P
Sbjct: 365 MVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSRSASGGVPQ 424
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD----LIYMYSRLHPDSSLYGILEHF 405
G +T +S+ L + K++ P L++A +P + L+ + P S L +
Sbjct: 425 GFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTDEICAQLMTQFPPGTPTSVLLQTISDE 484
Query: 406 LENAKLSENYF-FANCEEVLKVATVIDQLP-LRLHEKYLFCISPV-DMNDDISSQGLTQF 462
LE K S+N F ++ + LKV + + + + +K +PV DM + ++ T+F
Sbjct: 485 LE--KSSDNLFTLSDLKSKLKVIGLFEHMEDIPFFDKLKLSNAPVKDM--PMVTKAFTKF 540
Query: 463 ATNYSKK 469
+K+
Sbjct: 541 CETIAKR 547
>gi|323346239|gb|EGA80529.1| Suv3p [Saccharomyces cerevisiae Lalvin QA23]
Length = 648
Score = 277 bits (708), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 155/389 (39%), Positives = 237/389 (60%), Gaps = 20/389 (5%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D+T P W+P ARK R +I+H+GPTNSGKT++AL +L+S G Y GPLRLLA EV R
Sbjct: 216 DITNPAEWFPEARKIRRHIIMHIGPTNSGKTYRALQKLKSVDRGYYAGPLRLLAREVYDR 275
Query: 121 LNKANVSCDLITGQE-----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ + C+L+TG+E + + A + TVEM + +D V+DEIQM+ RG
Sbjct: 276 FHAEKIRCNLLTGEEVIRDLDDRGNSAGLTSGTVEMVPINQKFDVVVLDEIQMMSDGDRG 335
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSF 234
+++T ALLG+ + E+HLCG+ + +PL++ I+++TGD + + YERL L P+
Sbjct: 336 WAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTGDKLTINEYERLGKLSVEEKPIKDGI 395
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
++ GDC+V FS+ I LK IE +++YGSLPPETR +QA FN+ E+D+
Sbjct: 396 KGLRKGDCVVAFSKXKILDLKLKIEKDTNLKVAVIYGSLPPETRVQQAALFNNG--EYDI 453
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-----FPV 349
+VASDAIGMGLNL+I R++F+T K++G EL ++T ++KQI GRAGR+ S+ P
Sbjct: 454 MVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSRSASGGVPQ 513
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD----LIYMYSRLHPDSSLYGILEHF 405
G +T +S+ L + K++ P L++A +P + L+ + P S L +
Sbjct: 514 GFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTDEICAQLMTQFPPGTPTSVLLQTISDE 573
Query: 406 LENAKLSENYF-FANCEEVLKVATVIDQL 433
LE K S+N F ++ + LKV + + +
Sbjct: 574 LE--KSSDNLFTLSDLKSKLKVIGLFEHM 600
>gi|367009990|ref|XP_003679496.1| hypothetical protein TDEL_0B01560 [Torulaspora delbrueckii]
gi|359747154|emb|CCE90285.1| hypothetical protein TDEL_0B01560 [Torulaspora delbrueckii]
Length = 739
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 152/335 (45%), Positives = 215/335 (64%), Gaps = 19/335 (5%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D++ P W+P ARK R +I+H+GPTNSGKT+QAL +L+ + G Y GPLRLLA E+ R
Sbjct: 209 DISNPTEWFPEARKMKRHIIMHIGPTNSGKTYQALQKLKKADRGYYAGPLRLLAREIYDR 268
Query: 121 LNKANVSCDLITGQER-EEVDGAKHRA----VTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ V C+L+TG+E +++D A + A TVEM + ++D V+DEIQM+ RG
Sbjct: 269 FQEEGVRCNLLTGEEVIQDLDVAGNPAGITSGTVEMVPLTQNFDVVVLDEIQMMADLDRG 328
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV----PLNVPL 231
+++T ALLG A E+H+CG+ + +P+I++I ++ GD + V YERL L LN L
Sbjct: 329 WAWTHALLGARAREIHVCGEKSTLPVIRKIAEMAGDKLTVNEYERLGQLQVEPKALNKGL 388
Query: 232 GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSE 291
S ++ GDC+V FS+ I LK IE +++YGSLPPETR +QA FN + +
Sbjct: 389 KS---LRKGDCVVAFSKKKILDLKLKIEKETSLKVAVIYGSLPPETRIQQANLFN--TGD 443
Query: 292 FDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY-----GSK 346
+DVLVASDAIGMGLNL+I RI+F+T KF+G+EL DLT +KQI GRAGR+ G +
Sbjct: 444 YDVLVASDAIGMGLNLSIDRIVFTTNVKFNGLELVDLTSSNIKQIGGRAGRFKANADGGE 503
Query: 347 FPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFP 381
P G +T LD L + + + P L SA ++P
Sbjct: 504 IPKGYITALDPRVLKSVRQGIEAPIKYLSSAVIWP 538
>gi|172798|gb|AAA35135.1| SUV3 [Saccharomyces cerevisiae]
Length = 737
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 163/427 (38%), Positives = 254/427 (59%), Gaps = 24/427 (5%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D+T P W+P ARK R +I+H+GPTNSGKT++AL +L+S G Y GPLRLLA EV R
Sbjct: 216 DITNPAEWFPEARKIRRHIIMHIGPTNSGKTYRALQKLKSVDRGYYAGPLRLLAREVYDR 275
Query: 121 LNKANVSCDLITGQE-----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ + C+L+TG+E + + A + TVEM + +D V+DEIQM+ RG
Sbjct: 276 FHAEKIRCNLLTGEEVIRDLDDRGNSAGLTSGTVEMVPINQKFDVVVLDEIQMMSDGDRG 335
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS-F 234
+++T ALLG+ + E+HLCG+ + +PL++ I+++TGD + + YERL L P+
Sbjct: 336 WAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTGDKLTINEYERLGKLSVEEKPIKDGI 395
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
++ GDC+V FS+ I LK IE +++YGSLPPETR +QA FN+ E+D+
Sbjct: 396 KGLRKGDCVVAFSKKKILDLKLKIEKDTNLKVAVIYGSLPPETRVQQAALFNNG--EYDI 453
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-----FPV 349
+VASDAIGMGLNL+I R++F+T K++G EL ++T ++KQI GRAGR+ S+ P
Sbjct: 454 MVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSRSASGGVPQ 513
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD----LIYMYSRLHPDSSLYGILEHF 405
G +T +S+ L + K++ P L++A +P + L+ + P S L +
Sbjct: 514 GFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTDEICAQLMTQFPPGTPTSVLLQTISDE 573
Query: 406 LENAKLSENYF-FANCEEVLKVATVIDQLP-LRLHEKYLFCISPV-DMNDDISSQGLTQF 462
LE K S+N F ++ + LKV + + + + +K +PV DM + ++ T+F
Sbjct: 574 LE--KSSDNLFTLSDLKSKLKVIGLFEHMEDIPFFDKLKLSNAPVKDM--PMVTKAFTKF 629
Query: 463 ATNYSKK 469
+K+
Sbjct: 630 CETIAKR 636
>gi|6325228|ref|NP_015296.1| Suv3p [Saccharomyces cerevisiae S288c]
gi|2506501|sp|P32580.2|SUV3_YEAST RecName: Full=ATP-dependent RNA helicase SUV3, mitochondrial;
Flags: Precursor
gi|1039448|gb|AAB68158.1| Suv3p: mitochondrial ATP-dependent DExH box helicase [Saccharomyces
cerevisiae]
gi|190407918|gb|EDV11183.1| ATP-dependent RNA helicase SUV3, mitochondrial precursor
[Saccharomyces cerevisiae RM11-1a]
gi|285815508|tpg|DAA11400.1| TPA: Suv3p [Saccharomyces cerevisiae S288c]
gi|392295982|gb|EIW07085.1| Suv3p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 737
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 163/427 (38%), Positives = 254/427 (59%), Gaps = 24/427 (5%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D+T P W+P ARK R +I+H+GPTNSGKT++AL +L+S G Y GPLRLLA EV R
Sbjct: 216 DITNPAEWFPEARKIRRHIIMHIGPTNSGKTYRALQKLKSVDRGYYAGPLRLLAREVYDR 275
Query: 121 LNKANVSCDLITGQE-----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ + C+L+TG+E + + A + TVEM + +D V+DEIQM+ RG
Sbjct: 276 FHAEKIRCNLLTGEEVIRDLDDRGNSAGLTSGTVEMVPINQKFDVVVLDEIQMMSDGDRG 335
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS-F 234
+++T ALLG+ + E+HLCG+ + +PL++ I+++TGD + + YERL L P+
Sbjct: 336 WAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTGDKLTINEYERLGKLSVEEKPIKDGI 395
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
++ GDC+V FS+ I LK IE +++YGSLPPETR +QA FN+ E+D+
Sbjct: 396 KGLRKGDCVVAFSKKKILDLKLKIEKDTNLKVAVIYGSLPPETRVQQAALFNNG--EYDI 453
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-----FPV 349
+VASDAIGMGLNL+I R++F+T K++G EL ++T ++KQI GRAGR+ S+ P
Sbjct: 454 MVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSRSASGGVPQ 513
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD----LIYMYSRLHPDSSLYGILEHF 405
G +T +S+ L + K++ P L++A +P + L+ + P S L +
Sbjct: 514 GFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTDEICAQLMTQFPPGTPTSVLLQTISDE 573
Query: 406 LENAKLSENYF-FANCEEVLKVATVIDQLP-LRLHEKYLFCISPV-DMNDDISSQGLTQF 462
LE K S+N F ++ + LKV + + + + +K +PV DM + ++ T+F
Sbjct: 574 LE--KSSDNLFTLSDLKSKLKVIGLFEHMEDIPFFDKLKLSNAPVKDM--PMVTKAFTKF 629
Query: 463 ATNYSKK 469
+K+
Sbjct: 630 CETIAKR 636
>gi|323335091|gb|EGA76381.1| Suv3p [Saccharomyces cerevisiae Vin13]
Length = 737
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 163/427 (38%), Positives = 254/427 (59%), Gaps = 24/427 (5%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D+T P W+P ARK R +I+H+GPTNSGKT++AL +L+S G Y GPLRLLA EV R
Sbjct: 216 DITNPAEWFPEARKIRRHIIMHIGPTNSGKTYRALQKLKSVDRGYYAGPLRLLAREVYDR 275
Query: 121 LNKANVSCDLITGQE-----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ + C+L+TG+E + + A + TVEM + +D V+DEIQM+ RG
Sbjct: 276 FHAEKIRCNLLTGEEVIRDLDDRGNSAGLTSGTVEMVPINQKFDVVVLDEIQMMSDGDRG 335
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS-F 234
+++T ALLG+ + E+HLCG+ + +PL++ I+++TGD + + YERL L P+
Sbjct: 336 WAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTGDKLTINEYERLGKLSVEEKPIKDGI 395
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
++ GDC+V FS+ I LK IE +++YGSLPPETR +QA FN+ E+D+
Sbjct: 396 KGLRKGDCVVAFSKXKILDLKLKIEKDTNLKVAVIYGSLPPETRVQQAALFNNG--EYDI 453
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-----FPV 349
+VASDAIGMGLNL+I R++F+T K++G EL ++T ++KQI GRAGR+ S+ P
Sbjct: 454 MVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSRSASGGVPQ 513
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD----LIYMYSRLHPDSSLYGILEHF 405
G +T +S+ L + K++ P L++A +P + L+ + P S L +
Sbjct: 514 GFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTDEICAQLMTQFPPGTPTSVLLQTISDE 573
Query: 406 LENAKLSENYF-FANCEEVLKVATVIDQLP-LRLHEKYLFCISPV-DMNDDISSQGLTQF 462
LE K S+N F ++ + LKV + + + + +K +PV DM + ++ T+F
Sbjct: 574 LE--KSSDNLFTLSDLKSKLKVIGLFEHMEDIPFFDKLKLSNAPVKDM--PMVTKAFTKF 629
Query: 463 ATNYSKK 469
+K+
Sbjct: 630 CETIAKR 636
>gi|151942764|gb|EDN61110.1| suppressor of var1 [Saccharomyces cerevisiae YJM789]
gi|256270509|gb|EEU05693.1| Suv3p [Saccharomyces cerevisiae JAY291]
Length = 737
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 163/427 (38%), Positives = 254/427 (59%), Gaps = 24/427 (5%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D+T P W+P ARK R +I+H+GPTNSGKT++AL +L+S G Y GPLRLLA EV R
Sbjct: 216 DITNPAEWFPEARKIRRHIIMHIGPTNSGKTYRALQKLKSVDRGYYAGPLRLLAREVYDR 275
Query: 121 LNKANVSCDLITGQE-----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ + C+L+TG+E + + A + TVEM + +D V+DEIQM+ RG
Sbjct: 276 FHAEKIRCNLLTGEEVIRDLDDRGNSAGLTSGTVEMVPINQKFDVVVLDEIQMMSDGDRG 335
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS-F 234
+++T ALLG+ + E+HLCG+ + +PL++ I+++TGD + + YERL L P+
Sbjct: 336 WAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTGDKLTINEYERLGKLSVEEKPIKDGI 395
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
++ GDC+V FS+ I LK IE +++YGSLPPETR +QA FN+ E+D+
Sbjct: 396 KGLRKGDCVVAFSKKKILDLKLKIEKDTNLKVAVIYGSLPPETRVQQAALFNNG--EYDI 453
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-----FPV 349
+VASDAIGMGLNL+I R++F+T K++G EL ++T ++KQI GRAGR+ S+ P
Sbjct: 454 MVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSRSASGDVPQ 513
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD----LIYMYSRLHPDSSLYGILEHF 405
G +T +S+ L + K++ P L++A +P + L+ + P S L +
Sbjct: 514 GFITSFESKVLKSVRKAIEAPVEYLKTAVTWPTDEICAQLMTQFPPGTPTSVLLQTISDE 573
Query: 406 LENAKLSENYF-FANCEEVLKVATVIDQLP-LRLHEKYLFCISPV-DMNDDISSQGLTQF 462
LE K S+N F ++ + LKV + + + + +K +PV DM + ++ T+F
Sbjct: 574 LE--KSSDNLFTLSDLKSKLKVIGLFEHMEDIPFFDKLKLSNAPVKDM--PMVTKAFTKF 629
Query: 463 ATNYSKK 469
+K+
Sbjct: 630 CETIAKR 636
>gi|407404477|gb|EKF29914.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi
marinkellei]
Length = 623
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 165/439 (37%), Positives = 248/439 (56%), Gaps = 26/439 (5%)
Query: 62 LTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL 121
+ P WYP AR R+ + H GPTNSGKTH AL L + SG+YC PL+ LA +V KR+
Sbjct: 111 MHEPWDWYPKARFMRRRFVFHYGPTNSGKTHAALETLVKAKSGVYCAPLKALAAQVWKRI 170
Query: 122 NKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRA 181
+ A+V CDL+ G ER GA+H + TVEM + D VIDE+QM+ + RG+++TRA
Sbjct: 171 D-ASVPCDLLIGDERRFGGGAEHVSCTVEMTPIDYQIDVGVIDEVQMIADRDRGWAWTRA 229
Query: 182 LLGICANELHLCGDPAAVPLIQQILQVTGD--DVKVQSYERLSPLVPLNVPLGSFSNIQT 239
LLG+ A E+HLCG+ A+PLI+++L T + ++V ++RL PL G I+
Sbjct: 230 LLGLPAREIHLCGEERAIPLIRKVLYKTRELQRLEVVPHKRLVPLEVSPSLDGDLRRIEN 289
Query: 240 GDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDA--------SSE 291
GD +V FSR AI+ +KK +E+ +YGS+P R QA FN+ S +
Sbjct: 290 GDTLVCFSRKAIFDMKKKLENISGMAPHCIYGSMPFSVREAQADAFNNGTRDVIEGKSGK 349
Query: 292 FDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG--SKFPV 349
VL+++DAI GLN++I RIIF++M+KFDG ++ L + Q+AGRAGR+G
Sbjct: 350 KHVLISTDAIAYGLNMSIERIIFTSMRKFDGKQMVVLPQATILQVAGRAGRFGVLRSHKF 409
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPD-----------SSL 398
G T LDS D +L +++ P L+ AGL P +++ +Y RL +S
Sbjct: 410 GRCTTLDSNDFAVLREAVNSRLPSLQKAGLLPTAEVLELYIRLREAEEGNRVTENNLASF 469
Query: 399 YGILEHFLENAKLSENYFFAN-CEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISS 456
Y + F E + S+ +F + +L+VA ++ + L L ++ LFC P++ +
Sbjct: 470 YQRMREFSECCQASDLFFPCDLSRSLLQVAKELEAVTDLSLSDRILFCYVPLNDRGKETY 529
Query: 457 QGLTQFATNYSKKGIVQLR 475
L FA +++ V LR
Sbjct: 530 DLLRAFAYDHAAGRQVVLR 548
>gi|403160469|ref|XP_003320970.2| hypothetical protein PGTG_02012 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375170259|gb|EFP76551.2| hypothetical protein PGTG_02012 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 545
Score = 276 bits (705), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 158/364 (43%), Positives = 210/364 (57%), Gaps = 30/364 (8%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D+ RP YP AR+ R++ LHVGPTNSGKTH AL L S+ +G+Y GPLRLLA EV R
Sbjct: 134 DIRRPEDLYPDARRYKRQIHLHVGPTNSGKTHSALRALHSAHTGVYAGPLRLLAHEVFTR 193
Query: 121 LNKANVS-------CDLITGQE-REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCK 172
+N ++ C+L+TG+E R A + TVEM YD VIDEIQM+G
Sbjct: 194 INAGQIAPDLAPRPCNLLTGEEQRISSPTAGLTSCTVEMLSCQQFYDVVVIDEIQMIGDH 253
Query: 173 TRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL- 231
RG ++T+A+LG+ A ELHLCG+ + V LI+ + D+ + Y+RL+PL + L
Sbjct: 254 FRGDAWTQAVLGVQAKELHLCGEESVVGLIESLANSCQDEFILHRYQRLTPLKVADSSLK 313
Query: 232 GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFN----- 286
G S +Q GDC+VTFSR+ IY LKKAI+S + YG LPPE R R+A FN
Sbjct: 314 GDLSKVQRGDCLVTFSRNNIYALKKAIQSATDLRVGMAYGGLPPEVREREAQMFNLGSQV 373
Query: 287 DASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG-- 344
+ +DVLV SDAIGMGLNL I R+IF ++ KFDG L+ ++KQI GRAGR+G
Sbjct: 374 EGEGGYDVLVGSDAIGMGLNLKIKRVIFQSLHKFDGRNEVALSTSQIKQIGGRAGRFGIL 433
Query: 345 --------------SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS 390
VGEV ++ D+ LL +S+ P +E A L F + +
Sbjct: 434 PKNAGPGESGESREEGRTVGEVLTMNETDMSLLRRSMAAPFEKIERAVLKAPFTTVEGLA 493
Query: 391 RLHP 394
R P
Sbjct: 494 RRAP 497
>gi|365757986|gb|EHM99853.1| Suv3p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 648
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 149/387 (38%), Positives = 239/387 (61%), Gaps = 16/387 (4%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D+T P W+ ARK R +I+H+GPTNSGKT++AL +L+S G Y GPLRLLA EV R
Sbjct: 127 DITNPAEWFSEARKIRRHIIMHIGPTNSGKTYRALRKLKSVDRGYYAGPLRLLAREVYDR 186
Query: 121 LNKANVSCDLITGQE-----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
V C+L+TG+E ++ + A + TVEM + +D V+DEIQM+ RG
Sbjct: 187 FQNEKVRCNLLTGEEVIRDLDDKGNPAGLTSGTVEMVPINQKFDVVVLDEIQMMSDVDRG 246
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVP-LGSF 234
+++T ALLG+ + E+HLCG+ + +PL++ I+++TGD + + YERL L + P +
Sbjct: 247 WAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTGDKLTINEYERLGKLTVEDKPVVDGI 306
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
++ GDC+V FS+ I LK IE +++YGSLPPETR +QA+ FN E+DV
Sbjct: 307 KGLRKGDCVVAFSKKKILDLKLKIEKDTSLKVAVIYGSLPPETRVQQASLFNKG--EYDV 364
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-----FPV 349
+VASDAIGMGLNL+I R++F+T K++G EL ++T ++KQI GRAGR+ S+ P
Sbjct: 365 MVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSRSTSDDIPQ 424
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL-IYMYSRLHPDSSLYGILEHFLEN 408
G +T +S+ L + K++ P L++A +P ++ ++ ++ P + +L+ +
Sbjct: 425 GFITSFESKVLKSIRKAIESPVEYLKTAVTWPTDEICAHLMTQFPPGTPASALLQTISDE 484
Query: 409 AKLSENYFF--ANCEEVLKVATVIDQL 433
+ S + F ++ + +K+ + +Q+
Sbjct: 485 LEKSSDKLFTLSDLKNKVKIIGLFEQM 511
>gi|407850937|gb|EKG05094.1| ATP-dependent RNA helicase, putative [Trypanosoma cruzi]
Length = 623
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 164/439 (37%), Positives = 245/439 (55%), Gaps = 26/439 (5%)
Query: 62 LTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL 121
+ P WYP AR R+ + H GPTNSGKTH AL L + SG+YC PL+ LA +V KR+
Sbjct: 111 MHEPWDWYPKARFMRRRFVFHYGPTNSGKTHAALETLVKAKSGVYCAPLKALAAQVWKRI 170
Query: 122 NKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRA 181
+ A+V CDL+ G ER GA+H + TVEM + D VIDE+QM+ + RG+++TRA
Sbjct: 171 D-ASVPCDLLIGDERRFGGGAEHVSCTVEMTPIDYQIDVGVIDEVQMIADRDRGWAWTRA 229
Query: 182 LLGICANELHLCGDPAAVPLIQQILQVTGD--DVKVQSYERLSPLVPLNVPLGSFSNIQT 239
LLG+ A E+HLCG+ A+PLI+++L T + ++V + RL PL G I+
Sbjct: 230 LLGLPAREIHLCGEERAIPLIRKVLYKTHELQRLEVVPHRRLVPLEVSPSLDGDLRRIEN 289
Query: 240 GDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEF------- 292
GD +V FSR AI+ +KK +ES +YGS+P R QA FN+ + +
Sbjct: 290 GDTLVCFSRRAIFDMKKKLESISGMAPHCIYGSMPFSVREAQADAFNNGTRDVIEGKSGK 349
Query: 293 -DVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG--SKFPV 349
VL+++DAI GLN++I RIIF++M+KFDG ++ L + Q+AGRAGR+G
Sbjct: 350 KHVLISTDAIAYGLNMSIERIIFTSMRKFDGKQMVTLPQATILQVAGRAGRFGVLRTHKF 409
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPD-----------SSL 398
G T LD D +L +++ P L+ AGL P +++ +Y RL SS
Sbjct: 410 GRCTTLDLNDFAVLREAVNSRLPSLQKAGLLPTAEVLELYIRLREAEEGSRVTENNLSSF 469
Query: 399 YGILEHFLENAKLSENYFFAN-CEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISS 456
Y + F E + S+ +F + +L+VA ++ + L L ++ LFC P++ +
Sbjct: 470 YQRMREFSECCQASDLFFPCDLSRSLLQVAKELEAVTDLSLSDRILFCYVPLNDRGKETY 529
Query: 457 QGLTQFATNYSKKGIVQLR 475
L F +++ V LR
Sbjct: 530 DLLRAFGHDHAAGRHVVLR 548
>gi|365987095|ref|XP_003670379.1| hypothetical protein NDAI_0E03190 [Naumovozyma dairenensis CBS 421]
gi|343769149|emb|CCD25136.1| hypothetical protein NDAI_0E03190 [Naumovozyma dairenensis CBS 421]
Length = 761
Score = 275 bits (703), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 166/424 (39%), Positives = 251/424 (59%), Gaps = 20/424 (4%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
+++ P W+ ARK R +I+H+GPTNSGKT++AL +L++S SG Y GPLRLLA EV
Sbjct: 243 NISDPAEWFVEARKMKRHIIMHLGPTNSGKTYKALQKLKTSESGYYAGPLRLLAREVYDT 302
Query: 121 LNKANVSCDLITGQE-REEVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ C+L+TG+E +++D AK + TVEM + +D V+DEIQM+ + RG
Sbjct: 303 FKSQGIRCNLLTGEEIIKDLDSMGNSAKLTSGTVEMIPLNKKFDVIVLDEIQMMNDEDRG 362
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-VPLNVPLGSF 234
+++T ALLG+ A E+HLCG+ +A+PLI +I+++TGD + + YERL L V V
Sbjct: 363 WAWTNALLGVQAREVHLCGEKSALPLISKIIKLTGDRLTINEYERLGELKVESEVLKRGL 422
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
+++ GDCIV FS+ I LK IE++ +++YGSLPPETR +QA FN+ E V
Sbjct: 423 YSLRKGDCIVAFSKKKILDLKLQIEAKTNLKVAVIYGSLPPETRVQQAQLFNEG--ECHV 480
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGE 351
LVASDAIGMGLNL+I RIIF+T K++G EL LT +KQI GRAGR+ G+ +G
Sbjct: 481 LVASDAIGMGLNLSIDRIIFTTDLKYNGKELMKLTNSNIKQIGGRAGRFKFEGNGPAIGS 540
Query: 352 VTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI-YMYSRLHPDSSLYGILEHFLENAK 410
++ L +E L + + + P L+ A ++P + + R P + + +L+ + +
Sbjct: 541 ISSLHTEVLDSVKEGIEAPIEYLKKAVIWPTDKICEQLMIRFPPGTKVGVLLQTLSDQLE 600
Query: 411 LSENYFFA-----NCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATN 465
N F N V+K+ ++ +P +K +PV N + + +QF
Sbjct: 601 AGSNKLFKVSGLDNKFNVIKLFEDMEDIPFL--DKLKLSNAPVK-NLPMVQEAFSQFCLT 657
Query: 466 YSKK 469
SKK
Sbjct: 658 ISKK 661
>gi|71655679|ref|XP_816399.1| RNA helicase [Trypanosoma cruzi strain CL Brener]
gi|70881524|gb|EAN94548.1| RNA helicase, putative [Trypanosoma cruzi]
Length = 623
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 164/439 (37%), Positives = 247/439 (56%), Gaps = 26/439 (5%)
Query: 62 LTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL 121
+ P WYP AR R+ + H GPTNSGKTH AL L + SG+YC PL+ LA +V KR+
Sbjct: 111 MHEPWDWYPKARFMRRRFVFHYGPTNSGKTHAALETLVKAKSGVYCAPLKALAAQVWKRI 170
Query: 122 NKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRA 181
+ A+V CDL+ G ER GA+H + TVEM + D VIDE+QM+ + RG+++TRA
Sbjct: 171 D-ASVPCDLLIGDERRFGGGAEHVSCTVEMTPIDYQIDVGVIDEVQMIADRDRGWAWTRA 229
Query: 182 LLGICANELHLCGDPAAVPLIQQILQVTGD--DVKVQSYERLSPLVPLNVPLGSFSNIQT 239
LLG+ A E+HLCG+ A+PLI+++L T + ++V ++RL PL G I+
Sbjct: 230 LLGLPAREIHLCGEERAIPLIRKVLYKTHELQRLEVVPHKRLVPLEVSPSLDGDLRRIEN 289
Query: 240 GDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDA--------SSE 291
GD +V FSR AI+ +KK +E+ +YGS+P R QA FN+ S +
Sbjct: 290 GDTLVCFSRRAIFDMKKKLENISGMAPHCIYGSMPFSVREAQADAFNNGTRDVIEGKSGK 349
Query: 292 FDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG--SKFPV 349
VL+++DAI GLN++I RIIF++M+KFDG ++ L + Q+AGRAGR+G
Sbjct: 350 KHVLISTDAIAYGLNMSIERIIFTSMRKFDGKQMVTLPQATILQVAGRAGRFGVLRSHKF 409
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPD-----------SSL 398
G T LDS D +L +++ P L+ AGL P +++ +Y RL +S
Sbjct: 410 GRCTTLDSNDFAVLCEAVNSRLPSLQKAGLLPTAEVLELYIRLREAEEGGRVTENNLASF 469
Query: 399 YGILEHFLENAKLSENYFFAN-CEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISS 456
Y + F E + S+ +F + +L+VA ++ + L L ++ LFC P++ +
Sbjct: 470 YQRMREFSECCQASDLFFPCDLSRSLLQVAKELEAVTDLSLSDRILFCYVPLNDRGKETY 529
Query: 457 QGLTQFATNYSKKGIVQLR 475
L F +++ V LR
Sbjct: 530 DLLRAFGHDHAAGRHVVLR 548
>gi|401840253|gb|EJT43151.1| SUV3-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 737
Score = 275 bits (702), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 149/387 (38%), Positives = 239/387 (61%), Gaps = 16/387 (4%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D+T P W+ ARK R +I+H+GPTNSGKT++AL +L+S G Y GPLRLLA EV R
Sbjct: 216 DITNPAEWFSEARKIRRHIIMHIGPTNSGKTYRALRKLKSVDRGYYAGPLRLLAREVYDR 275
Query: 121 LNKANVSCDLITGQE-----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
V C+L+TG+E ++ + A + TVEM + +D V+DEIQM+ RG
Sbjct: 276 FQNEKVRCNLLTGEEVIRDLDDKGNPAGLTSGTVEMVPINQKFDVVVLDEIQMMSDVDRG 335
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVP-LGSF 234
+++T ALLG+ + E+HLCG+ + +PL++ I+++TGD + + YERL L + P +
Sbjct: 336 WAWTNALLGVVSKEVHLCGEKSVLPLVKSIVKMTGDKLTINEYERLGKLTVEDKPVVDGI 395
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
++ GDC+V FS+ I LK IE +++YGSLPPETR +QA+ FN E+DV
Sbjct: 396 KGLRKGDCVVAFSKKKILDLKLKIEKDTSLKVAVIYGSLPPETRVQQASLFNKG--EYDV 453
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-----FPV 349
+VASDAIGMGLNL+I R++F+T K++G EL ++T ++KQI GRAGR+ S+ P
Sbjct: 454 MVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSRSTSDDIPQ 513
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL-IYMYSRLHPDSSLYGILEHFLEN 408
G +T +S+ L + K++ P L++A +P ++ ++ ++ P + +L+ +
Sbjct: 514 GFITSFESKVLKSVRKAIESPVEYLKTAVTWPTDEICAHLMTQFPPGTPASALLQTISDE 573
Query: 409 AKLSENYFF--ANCEEVLKVATVIDQL 433
+ S + F ++ + +K+ + +Q+
Sbjct: 574 LEKSSDKLFTLSDLKNKVKIIGLFEQM 600
>gi|34582378|sp|O74727.1|SUV3_SACDO RecName: Full=ATP-dependent RNA helicase SUV3, mitochondrial;
Flags: Precursor
gi|3688566|emb|CAA09716.1| suv3 protein [Saccharomyces douglasii]
Length = 737
Score = 274 bits (701), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 161/427 (37%), Positives = 253/427 (59%), Gaps = 24/427 (5%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D+T P W+ ARK R +I+H+GPTNSGKT++AL +L+S G Y GPLRLLA EV R
Sbjct: 216 DITNPAEWFSEARKIRRHIIMHIGPTNSGKTYRALQKLKSVDRGYYAGPLRLLAREVYDR 275
Query: 121 LNKANVSCDLITGQE-----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
V C+L+TG+E ++ + A + TVEM + +D V+DEIQM+ RG
Sbjct: 276 FQSEKVRCNLLTGEEVIRDLDDKGNPAGLTSGTVEMVPINQKFDVVVLDEIQMMSDADRG 335
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS-F 234
+++T ALLG+ + E+HL G+ + +PL++ I+++TGD + + YERL L + P+
Sbjct: 336 WAWTNALLGVVSKEVHLVGEKSVLPLVKSIVKMTGDKLTINEYERLGKLSVEDKPVKDGI 395
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
++ GDC+V FS+ + LK IE +++YGSLPPETR +QA FN+ E+D+
Sbjct: 396 KGLRKGDCVVAFSKKKVLDLKLKIEKDTNLKVAVIYGSLPPETRVQQAALFNNG--EYDI 453
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-----FPV 349
+VASDAIGMGLNL+I R++F+T K++G EL ++T ++KQI GRAGR+ SK P
Sbjct: 454 MVASDAIGMGLNLSIDRVVFTTNMKYNGEELMEMTSSQIKQIGGRAGRFKSKSTSGGVPQ 513
Query: 350 GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD----LIYMYSRLHPDSSLYGILEHF 405
G +T +S+ L + K++ P L++A +P + L+ + P S L +
Sbjct: 514 GFITSFESKVLKSVRKAIESPIEYLKTAVTWPTDEICAQLMTQFPPGTPTSDLLQTISDE 573
Query: 406 LENAKLSENYF-FANCEEVLKVATVIDQLP-LRLHEKYLFCISPV-DMNDDISSQGLTQF 462
LE + S+N F ++ + LKV + + + + +K +PV DM + ++ T+F
Sbjct: 574 LERS--SDNLFTLSDLKSKLKVIGLFEHMEDIPFFDKLKLSNAPVKDM--PMVTKAFTKF 629
Query: 463 ATNYSKK 469
+K+
Sbjct: 630 CETIAKR 636
>gi|389741138|gb|EIM82327.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 781
Score = 273 bits (697), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 175/477 (36%), Positives = 246/477 (51%), Gaps = 64/477 (13%)
Query: 55 KKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLA 114
+ DFT + +P AR RK+I+HVGPTNSGKT++AL L ++ G Y GPLRLLA
Sbjct: 191 RAVDFTTVADS---FPEARVMRRKIIMHVGPTNSGKTYRALRALAAAPVGAYAGPLRLLA 247
Query: 115 WEVAKRLNKANV-----------------------------------------SCDLITG 133
E+ +RLN + C +ITG
Sbjct: 248 HEIYERLNTGQIVPAGIDPEAQPELADDTSNLDIPAGETKPAIRKVGDPRYIRPCSMITG 307
Query: 134 QEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLC 193
++ + + A A T+EM YD VIDEIQM+ RG S+T A+LG A+ELHLC
Sbjct: 308 EDVKLIPNANLYACTIEMIATSKRYDVVVIDEIQMITDSERGHSWTAAVLGTAASELHLC 367
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIY 252
G+ AVP+I+ + ++TGD++ V YERLSPL L G + + GDCIVTFSR I+
Sbjct: 368 GEDTAVPIIEALAKMTGDELIVNRYERLSPLEVAEKSLEGDLTKVTKGDCIVTFSRSKIF 427
Query: 253 RLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRI 312
+LK A+E + C++ YG LPPE R QA +FND SE VL+ SDAIGMGLNL I R+
Sbjct: 428 QLKDAVEKKTGLKCAVAYGRLPPEMRNEQARQFNDPDSEIGVLIGSDAIGMGLNLKIRRV 487
Query: 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSP 372
I S+M KFDG + L+ + KQIAGRAGR+G + G T L DLPLL +++ PS
Sbjct: 488 IISSMAKFDGEKETRLSTSQTKQIAGRAGRFGME-ASGIATTLHPADLPLLREAINAPSV 546
Query: 373 MLESA------GLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEE---- 422
L A G+F + + L P ++L E + + + + + +
Sbjct: 547 PLRYARVGWLVGVFEG-----VMAALPPGTTLSTAREALIYASVVPTCFEMMDANDKSTN 601
Query: 423 -VLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIF 478
V V ++ LP+ E+ + + P D ++ L Y + V LR +
Sbjct: 602 LVEFVDSIAKDLPIS--ERQMLSLCPFPFQDAVTRDILGSIYATYRDQAKVDLRRLL 656
>gi|395323837|gb|EJF56292.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 793
Score = 270 bits (691), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 174/459 (37%), Positives = 245/459 (53%), Gaps = 58/459 (12%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANV---------- 126
RK I+HVGPTNSGKTH AL L ++ G+Y GPLRLLA+E+ RLNK +
Sbjct: 201 RKFIMHVGPTNSGKTHNALRALAAAKRGVYAGPLRLLAFEIFDRLNKGQIVPLGMEPDPQ 260
Query: 127 --------------------------------SCDLITGQEREEV-DGAKHRAVTVEMAD 153
C+++TG+E + V D A + TVEM
Sbjct: 261 AEPDSQSNIDLGDGAEKGKAVIVKTGNPRYARQCNMVTGEEHKIVSDTAPLLSCTVEMTP 320
Query: 154 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDV 213
+ +D AV+DEIQ++ + RG ++T A+LG+ A E+HLCG+ +AVPLI+ +++ TGD +
Sbjct: 321 HATYFDVAVVDEIQLISDRQRGGAWTAAVLGLNAREIHLCGEESAVPLIEALVKQTGDTL 380
Query: 214 KVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGS 272
+V Y RL+PLV + L G S I+ GDC+VTFSR ++ L+K IE K C++ YG
Sbjct: 381 EVNRYNRLTPLVVADKSLNGDISRIKKGDCVVTFSRMGLFELQKNIEEATKMRCALAYGR 440
Query: 273 LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE-LRDLTVP 331
LPPE R+ QA FND +S +DVLV SDA+GMGLNL I R++F T+ KFDG R L+
Sbjct: 441 LPPEIRSEQAALFNDPNSGYDVLVGSDAVGMGLNLKIRRVVFETVSKFDGTRGQRPLSAS 500
Query: 332 EVKQIAGRAGRYG--SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY 389
++KQIAGRAGR+G G VT L DL L+ ++L L +A L +
Sbjct: 501 QIKQIAGRAGRFGMHGDDTAGIVTTLHPGDLDLVREALATSFEPLHTARLNMTMESYRKI 560
Query: 390 SRLHP-DSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQ------LPLRLHEKYL 442
P +SS + E + +++S + F + E+ + ID LP+RL L
Sbjct: 561 VEALPWESSNITVAEVYHYVSRMSPLFEFQSIHELEQGFLFIDDFADCLTLPMRL----L 616
Query: 443 FCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPG 481
SP DD + G Y V + E+ G
Sbjct: 617 ATNSPTPWRDDFAVTGARTMMEIYRDSFRVPIDEMLRRG 655
>gi|409046629|gb|EKM56109.1| hypothetical protein PHACADRAFT_63855, partial [Phanerochaete
carnosa HHB-10118-sp]
Length = 532
Score = 270 bits (689), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 160/460 (34%), Positives = 248/460 (53%), Gaps = 50/460 (10%)
Query: 69 YPLARKKVR-KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANV- 126
+PL R+ R K+I+HVGPTNSGKT+ AL L ++ GIY GPLRLLA E+ +RLN +
Sbjct: 1 FPLTRQAPRRKIIMHVGPTNSGKTYNALRALAAAEYGIYAGPLRLLAHEIFERLNNGQIV 60
Query: 127 ---------------------------------------SCDLITGQEREEVD-GAKHRA 146
+C+L+TG+E+ V+ GA +
Sbjct: 61 PLGQDPDADAEPDEDINLDVAPNGEKPAVQKKGNKRYVRACNLLTGEEQRTVEEGAGLLS 120
Query: 147 VTVEMA-DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQI 205
TVEM YD AV+DEIQM+ RG +++ ALL + A E+HLCG+ AVP+++ I
Sbjct: 121 CTVEMTPGGAMQYDVAVVDEIQMIADPERGPAWSSALLSLNAKEIHLCGEETAVPVVESI 180
Query: 206 LQVTGDDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKH 264
++ TGD+++V Y+RLSPL L G FS + GDC + FSR I+ +KK IE K
Sbjct: 181 VRDTGDELEVNRYQRLSPLTVAQESLNGDFSKARKGDCFIAFSRSRIFEVKKEIERATKM 240
Query: 265 LCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE 324
C++ YG LPPE RT QA+ FN + +D++V +DAIGMGLNL I RI+F T K++G E
Sbjct: 241 KCAVAYGRLPPELRTEQASLFNKPDTGYDIMVGTDAIGMGLNLKIKRIVFDTTTKWNGHE 300
Query: 325 LRDLTVPEVKQIAGRAGRYG---SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFP 381
+ L++ +KQIAGRAGR+G G T L DLP++ +L + ++ A + P
Sbjct: 301 MAPLSLSSIKQIAGRAGRFGMHDDNDASGVATTLWENDLPVVADALRATAQPIKYARIHP 360
Query: 382 NFDLIYMYSRLHPDSSLYGILEH-FLENAKLSENYFFANCEEVLKVATVIDQLP--LRLH 438
+ ++ P + E F +++ ++ N ++ + ++D+ L L
Sbjct: 361 TQERFEQVVQVLPAGTPLSAAELVFGYVSRIHPSFEMQNVRDIAQAFDIVDKTAGGLTLG 420
Query: 439 EKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIF 478
+++L ++P+ D + + Y++ V R++
Sbjct: 421 DRHLLRLAPIQWRDPEMLEMTSHLIRIYTQSLAVDYRQLL 460
>gi|410082243|ref|XP_003958700.1| hypothetical protein KAFR_0H01550 [Kazachstania africana CBS 2517]
gi|372465289|emb|CCF59565.1| hypothetical protein KAFR_0H01550 [Kazachstania africana CBS 2517]
Length = 746
Score = 269 bits (688), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 162/401 (40%), Positives = 232/401 (57%), Gaps = 16/401 (3%)
Query: 62 LTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL 121
+T P W+P RK R +I+H+GPTNSGKT++AL RL G Y GPLRLLA EV R
Sbjct: 210 ITDPIDWFPETRKIRRHIIMHLGPTNSGKTYRALKRLGEVDRGYYGGPLRLLAREVYDRF 269
Query: 122 NKANVSCDLITGQE-----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGF 176
C+L+TG+E E + A + TVEM D+D V+DEIQMLG + RG+
Sbjct: 270 KSEGTRCNLLTGEEVINDLDEHGEKAGLTSGTVEMIPYSQDFDVVVLDEIQMLGDEDRGW 329
Query: 177 SFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL--GSF 234
+++ ALLG+ A E+HLCG+ + +P+I++I +TGD + + YERL L + L G+
Sbjct: 330 AWSNALLGVKAKEIHLCGEKSVLPVIKKITALTGDKLTINEYERLGELSVESRSLKNGNM 389
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
N++ GDC+V FS+ I LK IE K +++YGSLPPETR +QA+ FN+ E+++
Sbjct: 390 RNLRKGDCLVAFSKKKILDLKLKIERETKFKVAVIYGSLPPETRLQQASLFNNG--EYEI 447
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGE 351
LVASDAIGMGLNL I RIIF T KF+G EL +LT ++QI GRAGRY + G
Sbjct: 448 LVASDAIGMGLNLAIDRIIFMTDVKFNGKELVNLTASNIRQIGGRAGRYKDTKDEPSKGF 507
Query: 352 VTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL-IYMYSRLHPDSSLYGILEHFLENAK 410
+T S L + + P L+ ++P ++ + R P + L +L+ F E +
Sbjct: 508 ITATKSSVLKSIRDGMEAPMSYLDKIVVWPTDEICAKLMVRYPPRTKLSFLLKKFEEQLE 567
Query: 411 LSENYFFA--NCEEVLKVATVIDQL-PLRLHEKYLFCISPV 448
F + E LK + +++ + HEK +PV
Sbjct: 568 NHSKQLFKLPDLESKLKTIDLFERMNTIPFHEKLRLSTAPV 608
>gi|50556074|ref|XP_505445.1| YALI0F15147p [Yarrowia lipolytica]
gi|49651315|emb|CAG78254.1| YALI0F15147p [Yarrowia lipolytica CLIB122]
Length = 718
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 147/338 (43%), Positives = 209/338 (61%), Gaps = 17/338 (5%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DL P YP AR RK+I H+GPTNSGKT++AL RL+ + SG Y GPLRLLA E R
Sbjct: 223 DLRHPEELYPDARMITRKIICHLGPTNSGKTYRALERLKKAKSGYYAGPLRLLARETYDR 282
Query: 121 LNKANVSCDLITGQEREEVDGAKHR-----AVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ + +L TG+E + R A T+EM D + VIDEIQML ++RG
Sbjct: 283 IKDEGLPINLKTGEEVINCEDEFGRPAPLTAGTIEMIDTNQLMEVCVIDEIQMLNDQSRG 342
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++ A+LG+ A E+HLCG+ + V +I++I+ TGD +++ YERL L PL S
Sbjct: 343 WAWLNAVLGVQAKEVHLCGEESVVNMIEKIVAKTGDTLEINRYERLGTLEMERRPLKSLK 402
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
++ GDC+V FSR ++ ++ IE+ CSI+YG+LPPETR Q+ FN +E VL
Sbjct: 403 EVRAGDCVVAFSRKKVFEFRQEIEATTGKKCSIIYGALPPETRVTQSRDFNSGVNE--VL 460
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGV-ELRDLTVPEVKQIAGRAGRYGSKFP------ 348
VA+DA+GMGLNL+I+RIIF+ ++K+DG+ + L P+ KQIAGRAGRY K P
Sbjct: 461 VATDAVGMGLNLSINRIIFAAIRKYDGLGDFNLLEPPQTKQIAGRAGRY--KVPGSDKVG 518
Query: 349 -VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 385
VG VT + ++ + + L P+ ML + + P+ DL
Sbjct: 519 SVGLVTSMSNQQSKYVAECLAAPTIMLSTLYVKPHDDL 556
>gi|238923919|ref|YP_002937435.1| putative ATP dependent RNA helicase [Eubacterium rectale ATCC
33656]
gi|238875594|gb|ACR75301.1| putative ATP dependent RNA helicase [Eubacterium rectale ATCC
33656]
Length = 647
Score = 268 bits (686), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 162/431 (37%), Positives = 242/431 (56%), Gaps = 30/431 (6%)
Query: 63 TRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN 122
RP +P A+ R ILH+GPTNSGKT+QAL RL+ + +G+Y GPLRLLA EV +++N
Sbjct: 151 ARPELEFPKAQSMKRHFILHIGPTNSGKTYQALERLKLAQNGVYLGPLRLLALEVYEKMN 210
Query: 123 KANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRAL 182
A + C ++TGQE EV ++ A TVEM D +YD AVIDE QM+ RG S+TRA+
Sbjct: 211 DAGIPCTMLTGQECLEVSDSRITASTVEMLDCDKEYDIAVIDEAQMVADDDRGHSWTRAI 270
Query: 183 LGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDC 242
LG A E+H+C P A ++ ++ + D+ +++ YER + L + P +++ GD
Sbjct: 271 LGTLAGEIHICMSPVAKDVVIHLINLCHDEYEIREYERKTALKLEDKPFSFPQDVREGDA 330
Query: 243 IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 302
+ FS+ ++ + +E G S++YGSLPPE R RQ T FN+ ++ V+V++DAIG
Sbjct: 331 FIVFSKKSVLNIAGRLEENGIK-PSVIYGSLPPEIRRRQMTLFNEKKTQ--VVVSTDAIG 387
Query: 303 MGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPL 362
MGLNL + RI+F ++KFDGV R L + E+KQIAGRAGR+G + G VT L ++L
Sbjct: 388 MGLNLPVRRIVFLEVEKFDGVSRRPLVISEIKQIAGRAGRFGL-YDTGYVTALGQKNLSY 446
Query: 363 LHKSLLEPSPMLESAGL-FPNFDL---------IYMYSRLHPDSSLYGILEH---FLENA 409
L +L P ++ L FP L I ++ P + I FL
Sbjct: 447 LKNTLNIPEQDIDIVSLGFPQVLLTMDAPLDAIIKLWHEAEPSAPFRKINVDEILFLYGY 506
Query: 410 KLSENYFFANCEEVLKVATVIDQLPLRLHEKYL------FCIS-----PVDMNDDISS-Q 457
E YF A+ + + +I P+ + ++ L +C+S +D D S Q
Sbjct: 507 AYKERYFIADFDNKYLLYKMI-TCPIDIKDRELVRQWLRYCMSYTSDISLDKPDKHSKYQ 565
Query: 458 GLTQFATNYSK 468
GL ++ + Y K
Sbjct: 566 GLMKYESYYKK 576
>gi|291525366|emb|CBK90953.1| Superfamily II DNA and RNA helicases [Eubacterium rectale DSM
17629]
gi|291527047|emb|CBK92633.1| Superfamily II DNA and RNA helicases [Eubacterium rectale M104/1]
Length = 647
Score = 268 bits (684), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 162/431 (37%), Positives = 242/431 (56%), Gaps = 30/431 (6%)
Query: 63 TRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN 122
RP +P A+ R ILH+GPTNSGKT+QAL RL+ + +G+Y GPLRLLA EV +++N
Sbjct: 151 ARPELEFPKAQSMKRHFILHIGPTNSGKTYQALERLKLAQNGVYLGPLRLLALEVYEKMN 210
Query: 123 KANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRAL 182
A + C ++TGQE EV ++ A TVEM D +YD AVIDE QM+ RG S+TRA+
Sbjct: 211 DAGIPCTMLTGQECLEVSDSRITASTVEMLDCDKEYDIAVIDEAQMVADDDRGHSWTRAI 270
Query: 183 LGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDC 242
LG A E+H+C P A ++ ++ + D+ +++ YER + L + P +++ GD
Sbjct: 271 LGTLAGEIHICMSPVAKDVVIHLINLCHDEYEIREYERKTALKLEDKPFSFPQDVREGDA 330
Query: 243 IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 302
+ FS+ ++ + +E G S++YGSLPPE R RQ T FN+ ++ V+V++DAIG
Sbjct: 331 FIVFSKKSVLNIAGRLEENGIK-PSVIYGSLPPEIRRRQMTLFNEKKTQ--VVVSTDAIG 387
Query: 303 MGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPL 362
MGLNL + RI+F ++KFDGV R L + E+KQIAGRAGR+G + G VT L ++L
Sbjct: 388 MGLNLPVRRIVFLEVEKFDGVSRRPLVISEIKQIAGRAGRFGL-YDTGYVTALGQKNLNY 446
Query: 363 LHKSLLEPSPMLESAGL-FPNFDL---------IYMYSRLHPDSSLYGILEH---FLENA 409
L +L P ++ L FP L I ++ P + I FL
Sbjct: 447 LKNTLNIPEQDIDIVSLGFPQVLLTMDAPLDAIIKLWHEAKPSAPFRKINVDEILFLYGY 506
Query: 410 KLSENYFFANCEEVLKVATVIDQLPLRLHEKYL------FCIS-----PVDMNDDISS-Q 457
E YF A+ + + +I P+ + ++ L +C+S +D D S Q
Sbjct: 507 AYKERYFIADFDNKYLLYKMI-TCPIDIKDRELVRQWLRYCMSYTSDISLDKPDKHSKYQ 565
Query: 458 GLTQFATNYSK 468
GL ++ + Y K
Sbjct: 566 GLMKYESYYKK 576
>gi|169866863|ref|XP_001840016.1| ATP-dependent RNA helicase suv3 [Coprinopsis cinerea okayama7#130]
gi|116498902|gb|EAU81797.1| ATP-dependent RNA helicase suv3 [Coprinopsis cinerea okayama7#130]
Length = 846
Score = 267 bits (682), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 172/447 (38%), Positives = 244/447 (54%), Gaps = 44/447 (9%)
Query: 72 ARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVS---- 127
R+ RKVI+HVGPTNSGKTH AL L ++ G+Y GPLRLLA E+ +RLN ++
Sbjct: 266 TRRMQRKVIMHVGPTNSGKTHHALRALAAAPYGVYAGPLRLLAHEIWERLNLGHIVPKGV 325
Query: 128 ---------------------------------CDLITGQEREEV-DGAKHRAVTVEMAD 153
++ITG+E++ V D AK + TVEM
Sbjct: 326 EDGTYKNDDAPYLKALPHFSTLSELGNPEYARLTNMITGEEQKIVSDEAKILSCTVEMLS 385
Query: 154 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDV 213
YD AV+DEIQM+ RG +T A+LG+ A E+HLCG+ AVP+++ +L+ TGD++
Sbjct: 386 FHRTYDVAVVDEIQMITDPQRGSGWTNAVLGLAAKEVHLCGEETAVPIVEALLKDTGDEL 445
Query: 214 KVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGS 272
V+ YERL+PL L G +S +Q GDCIV F+R I+ +KK +E+ C++VYG
Sbjct: 446 IVKRYERLTPLKVEEESLGGDYSKVQKGDCIVVFNRKGIFAVKKKVEALTGLRCAVVYGR 505
Query: 273 LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPE 332
LPPE R+ QA+ FND S +DVL+ SDAIGMGLNL I R+IF ++KKF L++ +
Sbjct: 506 LPPEIRSEQASLFNDPDSGYDVLIGSDAIGMGLNLKIRRVIFDSVKKFSAGGESLLSISQ 565
Query: 333 VKQIAGRAGRYG-SKFPVGEVTCLDSEDLPLLHKSLLEPS-PMLESAGLFPNFDLIYMYS 390
VKQIAGRAGR+G + P G T L EDLP L +++ P P+ + F + S
Sbjct: 566 VKQIAGRAGRFGLHEEPGGYATTLHEEDLPYLREAVGSPFIPLPFARITFDANTFSNLLS 625
Query: 391 RLHPDSSLYGILEHFLENAKLSENYFFANCE-EVLKVATVIDQLP--LRLHEKYLFCISP 447
L P+SS ++ +L + + + E+ ID+ L E+ L +P
Sbjct: 626 VLPPNSSTSTVILAHHYAGRLPPKVRYQDTDFELTSTFNFIDEFSDTLTARERVLHLNAP 685
Query: 448 VDMNDDISSQGLTQFATNYSKKGIVQL 474
V D ++ + F K V L
Sbjct: 686 VTWRDPLTVAMVRTFLEQARDKMYVDL 712
>gi|392378293|ref|YP_004985453.1| putative helicase [Azospirillum brasilense Sp245]
gi|356879775|emb|CCD00701.1| putative helicase [Azospirillum brasilense Sp245]
Length = 755
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 150/405 (37%), Positives = 234/405 (57%), Gaps = 12/405 (2%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+ AR VRK+ L VGPTNSGKTH A+ RL + SG Y PLRLLA E + L +C
Sbjct: 200 FATARAMVRKLRLFVGPTNSGKTHAAMDRLAEAPSGCYLAPLRLLALEGQEALETRGRAC 259
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
L+TG+ER+ GA + T+EM + + VIDEIQM+G RG+++T+A+ G+ A
Sbjct: 260 SLVTGEERDVRPGASFTSSTIEMVNTSKVWGACVIDEIQMIGDPDRGWAWTQAVAGVAAP 319
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL--VPLNVPLGSFSNIQTGDCIVTF 246
E+ + G A+P +Q++ G++++V + R SPL VPL N++ GD ++ F
Sbjct: 320 EILMTGSADAIPYVQRLATALGEELEVVEFTRKSPLRVQEERVPL---ENVRRGDAVIAF 376
Query: 247 SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 306
SR + L++ + +R H +++YG+L PE R +A RF D ++ DVLVA+DAIGMGLN
Sbjct: 377 SRKDVMGLRRELLAR-DHTVAVIYGALSPEVRRAEARRFRDGTA--DVLVATDAIGMGLN 433
Query: 307 LNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKS 366
L ++R++ ST +K+DG E RDL E++QI GRAGR+G G V L+ E++ + ++
Sbjct: 434 LPVARVVLSTTRKYDGREERDLNSSEIRQIGGRAGRFG-MHEEGRVAVLEGENINPVRRA 492
Query: 367 LLEP--SPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHF-LENAKLSENYFFANCEEV 423
L P P + PN + +R SL +L E + ++ + + E+
Sbjct: 493 LTTPPVPPEDPRTWISPNLTHVEAIARELDTDSLAKVLRTAGQELLRANQTFRMTDLEQR 552
Query: 424 LKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
++ AT +D+ L L E+ + P+D+ D + + L +ATN K
Sbjct: 553 IQAATAVDRAKLPLAERDMLARCPIDVRDQNNLRLLALWATNQGK 597
>gi|358056046|dbj|GAA98391.1| hypothetical protein E5Q_05077 [Mixia osmundae IAM 14324]
Length = 759
Score = 265 bits (678), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 151/355 (42%), Positives = 203/355 (57%), Gaps = 23/355 (6%)
Query: 72 ARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANV----- 126
AR R + +HVGPTNSGKTH AL L S +G Y GPLR+LA EV R N ++
Sbjct: 194 ARAIPRTIHVHVGPTNSGKTHNALRALADSDNGAYAGPLRMLAHEVFHRFNSGDIKGKRG 253
Query: 127 ---SCDLITGQEREEVD-GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRAL 182
C+LITG++ +V A + T+EM + D VIDEIQ++ RG ++T AL
Sbjct: 254 QSLQCNLITGEDIRQVSPEAGLVSCTIEMVPIKKLMDVTVIDEIQLMALHDRGAAWTGAL 313
Query: 183 LGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDC 242
+ + A +H+CG+P+AV LI +I + GD+V + Y+RLSPL LGS ++ GDC
Sbjct: 314 INLQARNVHVCGEPSAVGLIYKIARQCGDNVVLHEYDRLSPLTLSKKALGSLKQLERGDC 373
Query: 243 IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 302
+V FSR I++LK+ IE ++ YG LPPE RT QA FND E D+++ SDA+G
Sbjct: 374 LVAFSRKRIFQLKRDIERDTNLRVAVAYGGLPPEVRTSQAKSFNDG--EVDIMIGSDALG 431
Query: 303 MGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV------------G 350
MGLNL++ R+IFS M+K+DG L VP KQIAGRAGRYG +F V G
Sbjct: 432 MGLNLHVRRMIFSAMEKWDGERAIPLNVPLTKQIAGRAGRYGKQFLVEGRPVDPPEKSQG 491
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHF 405
VT L S+DLP L ++ P+ L A P + L P+ LE
Sbjct: 492 FVTTLRSDDLPFLETAINAPARRLHVAIWGPGGKHVDRLKLLFPEDHDTAELEQL 546
>gi|239606254|gb|EEQ83241.1| mitochondrial ATP-dependent RNA helicase Suv3 [Ajellomyces
dermatitidis ER-3]
Length = 730
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 168/431 (38%), Positives = 231/431 (53%), Gaps = 61/431 (14%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
DL P WYP AR R + LHVGPTNSGKT+ AL RLE + +G Y GPLRLLA E+
Sbjct: 186 LADLRNPTEWYPAARSLHRTIHLHVGPTNSGKTYHALKRLEKAKTGFYAGPLRLLAHEIY 245
Query: 119 KRLNKANVSCDLITGQE----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
RLN + C L+TG E ++++ G + TVEMA D + VIDEIQM+
Sbjct: 246 TRLNAKGIPCGLVTGDEVRISQDQIPGIY--SNTVEMAPFGQDVEVGVIDEIQMIA---- 299
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GS 233
DP L+ GD +++ YERL+PL ++ L G+
Sbjct: 300 --------------------DPHRAGLM-------GDKLEIHHYERLNPLKAMSRSLKGN 332
Query: 234 FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293
SN+Q GDC+V FSR I+ LK+ IE +IVYGSLP E R++QA FND ++++D
Sbjct: 333 LSNLQKGDCVVAFSRIGIHGLKQEIEKATGRRAAIVYGSLPAEIRSQQADLFNDPNNDYD 392
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS-------- 345
LVASDAIGMGLNL+ RIIF ++ + L LTV +VKQI GRAGRY S
Sbjct: 393 FLVASDAIGMGLNLSCKRIIFESVVRRLPTGLTRLTVSQVKQIGGRAGRYRSAKDTANTN 452
Query: 346 -----------KFPVGEVTCLDSEDLPLLHKSL-LEPSPMLESAGLFPNFDLIYMYSRLH 393
+ VG VT L+ DLP + K+L EP P+L +AGL P ++ +S
Sbjct: 453 SSKIASSDKEAETNVGFVTSLEDVDLPYIRKALDTEPEPIL-AAGLLPPDHIVKRFSEHF 511
Query: 394 PDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMN 451
P + + + L N A++ ++F ++ + + A ID + L + EK +F +P M
Sbjct: 512 PPGTPFAYILQRLHNIAQVDSSFFLSDGQGHAEAAEAIDSIKGLSMDEKLVFLSAPTHMR 571
Query: 452 DDISSQGLTQF 462
D S +F
Sbjct: 572 DPQMSNIFREF 582
>gi|71034089|ref|XP_766686.1| ATP-dependent DEAD box helicase [Theileria parva strain Muguga]
gi|68353643|gb|EAN34403.1| ATP-dependent DEAD box helicase, putative [Theileria parva]
Length = 690
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 163/417 (39%), Positives = 235/417 (56%), Gaps = 25/417 (5%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQER 136
R V LHVGP NSGKTH ++ L SS SGIYC PLRLLAWE+ +N + V C L+TGQE
Sbjct: 169 RNVYLHVGPPNSGKTHDSIKALLSSGSGIYCAPLRLLAWEMFNTINNSGVKCSLLTGQEL 228
Query: 137 EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDP 196
+ +G H + TVEM ++ AV+DE+QM+G TRG+S+T+A L + ELH+CG
Sbjct: 229 VD-NGEPHVSCTVEMIPFERTFEVAVLDEMQMVGDLTRGYSWTKAFLSLNVPELHICGSK 287
Query: 197 AAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKK 256
+ + + + + GD +++ +ERL L ++ +G S ++ GDC+V FSR+ + L+
Sbjct: 288 SCISITANLANIRGDKLEIFEHERLCNLKVMDKAVG-LSELEPGDCVVCFSRYDAFNLRN 346
Query: 257 AIESR-------GKHLC--SIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307
IES K C SIVYG LPPETR Q RFN + VLVASD IGMG+N+
Sbjct: 347 IIESTKYSWNTLSKEECVTSIVYGLLPPETRYDQIERFNKGLTR--VLVASDVIGMGVNV 404
Query: 308 NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSL 367
+I R+IF + KFDG R LTV EV QIAGRAGR+G G V+C+ +DLP L + +
Sbjct: 405 SIRRVIFYRLTKFDGNVSRPLTVSEVHQIAGRAGRFGIS-SEGFVSCVREQDLPTLREVM 463
Query: 368 LEPSPMLESAGLFPNFDLI-YMYSRLH----PDSSLYGILEHFLENAKLSENYFFANCEE 422
+ +E A + P D I YS L SL I + ++ + + + +
Sbjct: 464 AQEVTQIEKAVISPPLDTIGAFYSSLKHFTGEQHSLLNITKLIGSIGRVGQGFMMCDFAQ 523
Query: 423 VLKVATVID--QLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREI 477
+ V+ ++ LP + ++YL V M + S + FA ++S V++ I
Sbjct: 524 INSVSRCLEGINLPFDILKEYLM----VPMGSTLVSLIVRAFAASHSLLNSVKISNI 576
>gi|341880409|gb|EGT36344.1| hypothetical protein CAEBREN_06112 [Caenorhabditis brenneri]
Length = 658
Score = 264 bits (675), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 127/257 (49%), Positives = 176/257 (68%), Gaps = 5/257 (1%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DLTRPH WYP AR RK+ H GPTNSGKT+ AL R + S ++CGPL+LLA EV
Sbjct: 169 SDLTRPHNWYPEARSITRKIFFHAGPTNSGKTYHALKRFGEAKSAVFCGPLKLLAAEVFN 228
Query: 120 RLNKANVSCDLITGQER----EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
R N+ + CDL+TG+ER + ++H + TVEM + VIDEIQML + RG
Sbjct: 229 RTNELGIPCDLVTGEERRFAKDNHHPSQHLSSTVEMLSTQMRVEVVVIDEIQMLRDEQRG 288
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++TRALLG A+E+HLCG+PAA+ +++++L+ G+ V+V+ YER SPL + + S+S
Sbjct: 289 WAWTRALLGAAADEIHLCGEPAAIDIVKKLLEPIGETVEVRYYERKSPLAIGDKAIESYS 348
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
NI+ GDCIV FS+ A++ K +E G +++YG LPP T+ QA +FND E +VL
Sbjct: 349 NIEPGDCIVCFSKRAVFFNSKKLEENGIK-PAVIYGDLPPGTKLAQAAKFNDPDDECNVL 407
Query: 296 VASDAIGMGLNLNISRI 312
VA+DAIGMGLNLNI R+
Sbjct: 408 VATDAIGMGLNLNIKRV 424
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 52/92 (56%)
Query: 376 SAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPL 435
+ G+ P +D I +S P +S +L+ F+ +S+++F ++ ++A +IDQ+PL
Sbjct: 429 NVGIAPTYDQIETFSFHLPQASFVRLLDLFVSVCSVSDHFFICTVYDMRELAVLIDQVPL 488
Query: 436 RLHEKYLFCISPVDMNDDISSQGLTQFATNYS 467
L +Y FC SP++ +D ++ + A +S
Sbjct: 489 PLKVRYTFCTSPLNTDDKRTAAVFVKMARRFS 520
>gi|261188656|ref|XP_002620742.1| mitochondrial ATP-dependent RNA helicase Suv3 [Ajellomyces
dermatitidis SLH14081]
gi|239593100|gb|EEQ75681.1| mitochondrial ATP-dependent RNA helicase Suv3 [Ajellomyces
dermatitidis SLH14081]
Length = 730
Score = 264 bits (675), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 168/431 (38%), Positives = 231/431 (53%), Gaps = 61/431 (14%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
DL P WYP AR R + LHVGPTNSGKT+ AL RLE + +G Y GPLRLLA E+
Sbjct: 186 LADLRNPTEWYPAARSLHRTIHLHVGPTNSGKTYHALKRLEKAKTGFYAGPLRLLAHEIY 245
Query: 119 KRLNKANVSCDLITGQE----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
RLN + C L+TG E ++++ G + TVEMA D + VIDEIQM+
Sbjct: 246 TRLNAKGIPCGLVTGDEVRISQDQIPGIY--SNTVEMAPFGQDVEVGVIDEIQMIA---- 299
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GS 233
DP L+ GD +++ YERL+PL ++ L G+
Sbjct: 300 --------------------DPHRAGLM-------GDKLEIHHYERLNPLKAMSRSLKGN 332
Query: 234 FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293
SN+Q GDC+V FSR I+ LK+ IE +IVYGSLP E R++QA FND ++++D
Sbjct: 333 LSNLQKGDCVVAFSRIGIHGLKQEIEKATGRRAAIVYGSLPAEIRSQQADLFNDPNNDYD 392
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS-------- 345
LVASDAIGMGLNL+ RIIF ++ + L LTV +VKQI GRAGRY S
Sbjct: 393 FLVASDAIGMGLNLSCKRIIFESVVRRLPTGLTRLTVSQVKQIGGRAGRYRSAKDTANTN 452
Query: 346 -----------KFPVGEVTCLDSEDLPLLHKSL-LEPSPMLESAGLFPNFDLIYMYSRLH 393
+ VG VT L+ DLP + K+L EP P+L +AGL P ++ +S
Sbjct: 453 SSKIASSDKEAETNVGFVTSLEDVDLPYIRKALDTEPEPIL-AAGLLPPDHIVKRFSEHF 511
Query: 394 PDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMN 451
P + + + L N A++ ++F ++ + + A ID + L + EK +F +P M
Sbjct: 512 PPGTPFAYILQRLHNIAQVDSSFFLSDGQGHAEAAEAIDSIKGLSMDEKLVFLSAPTHMR 571
Query: 452 DDISSQGLTQF 462
D S +F
Sbjct: 572 DPQMSNIFREF 582
>gi|209965410|ref|YP_002298325.1| RNA helicase RhrA [Rhodospirillum centenum SW]
gi|31322740|gb|AAP22927.1| RhrA [Rhodospirillum centenum]
gi|209958876|gb|ACI99512.1| RNA helicase RhrA [Rhodospirillum centenum SW]
Length = 740
Score = 263 bits (673), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 148/405 (36%), Positives = 231/405 (57%), Gaps = 11/405 (2%)
Query: 56 KFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAW 115
+FDF R +PLAR R+++L +GPTNSGKTH+A+ L + +G+Y PLRLLA
Sbjct: 239 EFDFARFER---LFPLARALGRRLVLVIGPTNSGKTHRAMQALRQAPTGVYLAPLRLLAL 295
Query: 116 EVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
EV RLN+ L+TG+E V A+H + T+EM D + D AVIDE+QML + RG
Sbjct: 296 EVMDRLNREGTPTTLLTGEEEIRVPDARHLSSTIEMLDPEATVDVAVIDEVQMLADRDRG 355
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
+++T AL+G+ A ++L G P PL+++ G+ ++V ER PL + L +S
Sbjct: 356 WAWTAALMGVPAKTVYLLGAPEVRPLVERAAAHLGEPLEVVELERKQPLHMIEERL-EWS 414
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
++ GD ++ FSR ++ ++ +++RG +++YG+L P+ R R+A RFN + E DV+
Sbjct: 415 DVGRGDALIAFSRREVHAVRDTVQARGL-TAAVIYGALAPDVRRREAERFN--TGEADVV 471
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 355
+A+DAIGMGLNL + R++F+T++KFDGVE+R L EVKQIAGRAGR+G F GE +
Sbjct: 472 IATDAIGMGLNLPVRRVLFTTLEKFDGVEMRSLHPAEVKQIAGRAGRFG-HFEAGEFGVV 530
Query: 356 DSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLH---PDSSLYGILEHFLENAKLS 412
L + P M +RL SL +++ F
Sbjct: 531 GRGTPQALRMIVTRPDTSFGPKTALTVRPTRAMVARLAGRVGSHSLSLLIDCFAAARTAG 590
Query: 413 ENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQ 457
+ A+ E + K+A V+D+ + +K P D++ D+ ++
Sbjct: 591 SPFRVADLEPLRKLAAVLDEKEIGFEDKLSLLFVPADLDKDVDAR 635
>gi|403213420|emb|CCK67922.1| hypothetical protein KNAG_0A02330 [Kazachstania naganishii CBS
8797]
Length = 741
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 152/383 (39%), Positives = 229/383 (59%), Gaps = 17/383 (4%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
D++ P W+P ARK R +++H+GPTNSGKT++AL +L+ G Y GPLRLLA EV R
Sbjct: 215 DISNPTKWFPEARKMRRHIVMHLGPTNSGKTYRALKQLQQVEKGYYGGPLRLLAREVYDR 274
Query: 121 LNKANVSCDLITGQE-REEVDGAKHRA----VTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
+ C+L+TG+E +++D +RA T+EM + D+D V+DEIQM+ + RG
Sbjct: 275 FKSQGIRCNLLTGEEIVDDLDQMGNRAGLTSGTIEMIPLNRDFDVVVLDEIQMMADEERG 334
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVP-LGSF 234
+++T ALLG+ E+H+CG+P+ + LI+++ Q+ YERL L + P LG
Sbjct: 335 WAWTNALLGVRGKEVHVCGEPSTLELIRKVCQLX-XXXXXNKYERLGDLTVESQPILGQM 393
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
S ++ GDC+V FS+ I LK IE +++YGSLPPETR +QA FN S ++D+
Sbjct: 394 SKLRKGDCLVAFSKKKILDLKLKIERETGFSVAVIYGSLPPETRVQQADLFN--SGKYDI 451
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY-------GSKF 347
LVASDAIGMGLNL+I R+IF+T KKF+G E+ LT ++QI GRAGR+ G+
Sbjct: 452 LVASDAIGMGLNLSIDRVIFTTDKKFNGSEMIPLTNSNIRQIGGRAGRFKEQSSTGGNSR 511
Query: 348 PVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL-IYMYSRLHPDSSLYGILEHFL 406
G +T L + + + P L++A ++P ++ + R P++ L +LE F
Sbjct: 512 SQGHITGWTHAVLKSVREGIESPVEPLQNAIIWPTDEICTQLMVRYPPNTKLGYLLEQFA 571
Query: 407 ENAKLSENYFFANCEEVLKVATV 429
S + F + K+AT+
Sbjct: 572 ARLAKSRDQVFKLSDLGDKLATI 594
>gi|443924800|gb|ELU43759.1| ATP-dependent RNA helicase suv3 [Rhizoctonia solani AG-1 IA]
Length = 608
Score = 262 bits (669), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 143/335 (42%), Positives = 196/335 (58%), Gaps = 51/335 (15%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
TDL WYPLAR RK+I+HVGPTNSGKT+ AL L + SG+Y GPLRLLA EV
Sbjct: 199 TDLRHMIEWYPLARSMRRKIIMHVGPTNSGKTYNALQALAGAESGVYAGPLRLLAHEVWT 258
Query: 120 RLNKANVS-----------------------------------------------CDLIT 132
R+N+ +++ C+LIT
Sbjct: 259 RINRGSIAPKSETVDLDDAAPSMVVTESQDPDSGAVPIPVPAPPPAPPKVYAGRPCNLIT 318
Query: 133 GQEREEVD-GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH 191
G+++ V A + TVEM + VIDEIQML RG ++T A+LG+ A ELH
Sbjct: 319 GEDQRIVSPNATTVSCTVEMIPKHLVWSVGVIDEIQMLADPQRGGAWTSAVLGLAAKELH 378
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL--VPLNVPLGSFSNIQTGDCIVTFSRH 249
LCG+ V L++++ ++TGD++ V YERL+PL P ++ G N++ GDC+VTFSR+
Sbjct: 379 LCGEDTVVDLVRELCRMTGDELIVNRYERLTPLEVAPYSLE-GKLKNVERGDCVVTFSRN 437
Query: 250 AIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNI 309
I+ K+ IE C++VYG LPPE R+ QA FND S +DV+VASD++GMGLNL I
Sbjct: 438 DIFMTKRKIEKETGLRCAVVYGRLPPEVRSEQAQLFNDEESGYDVIVASDSVGMGLNLKI 497
Query: 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
R++F K++G + L+VP +KQIAGRAGR+G
Sbjct: 498 KRVVFLKTDKWNGKQDVPLSVPLIKQIAGRAGRFG 532
>gi|239628719|ref|ZP_04671750.1| helicase domain-containing protein [Clostridiales bacterium
1_7_47_FAA]
gi|239518865|gb|EEQ58731.1| helicase domain-containing protein [Clostridiales bacterium
1_7_47FAA]
Length = 593
Score = 261 bits (668), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 151/364 (41%), Positives = 212/364 (58%), Gaps = 23/364 (6%)
Query: 64 RPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK 123
+P YP AR+ R+ ILHVGPTNSGKTH AL RL+ G Y GPLRLLA EV +LN
Sbjct: 89 KPEEEYPGAREMKRRFILHVGPTNSGKTHDALERLKECGHGAYFGPLRLLALEVYDKLNS 148
Query: 124 ANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALL 183
++C +ITG+E EV GA +A TVEM + +D V+DE QM+ RG ++TRA+L
Sbjct: 149 EGLACSMITGEETLEVPGAVCQACTVEMLNDHDYFDIVVVDECQMVADPYRGHNWTRAVL 208
Query: 184 GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCI 243
G+ A E+HLC P A +I Q+++ GD +V ++R + L P +++ GD +
Sbjct: 209 GLRAEEIHLCMAPEAEDIIVQMIKRCGDQFRVVRHKRNTRLTLETKPYNLKRDLKKGDAL 268
Query: 244 VTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM 303
+ FS+ ++ L +E+ G H CS++YGSLPP TR Q RF + E DV+V++DAIGM
Sbjct: 269 IVFSKKSVLALAAHLENEGTH-CSVIYGSLPPATRREQVRRF--LAKETDVVVSTDAIGM 325
Query: 304 GLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED---- 359
GLNL I RI+F +KFDGV R L E+KQIAGRAGRYG + G VT +D D
Sbjct: 326 GLNLPIRRIVFVETRKFDGVGKRTLNPEEIKQIAGRAGRYGL-YDEGFVTAIDELDAIKD 384
Query: 360 ------LPLLHKSLLEPSPMLESAG-------LFPNFDLIYMYSRLHPDS--SLYGILEH 404
+P++ + P +L ++ + D +Y ++ D SLY EH
Sbjct: 385 GLSRLPIPIMKAYVGFPEQLLNLPAEIDTLVKIWASMDTPSIYEKMEVDELLSLYMTFEH 444
Query: 405 FLEN 408
++
Sbjct: 445 VHQD 448
>gi|294954454|ref|XP_002788176.1| ATP-dependent RNA and DNA helicase, putative [Perkinsus marinus
ATCC 50983]
gi|239903391|gb|EER19972.1| ATP-dependent RNA and DNA helicase, putative [Perkinsus marinus
ATCC 50983]
Length = 661
Score = 260 bits (665), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 164/429 (38%), Positives = 228/429 (53%), Gaps = 46/429 (10%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQ-- 134
R + H GPTNSGKT+ A+ L ++S G+YCGPLRLLAW+ + L + DLITGQ
Sbjct: 126 RVIHFHEGPTNSGKTYAAMQALRTASRGVYCGPLRLLAWQCFEDLKAMGLDSDLITGQLD 185
Query: 135 ---EREEVDGAKHRAVTVEMADVVS--DYDCAVIDEIQMLGCKTRGFSFTRALLGICANE 189
E E H + TVEM +YD VIDE+Q++G + RG ++TRA+L + A E
Sbjct: 186 ASAENTETGVGTHLSCTVEMCPGPGSVEYDVGVIDEVQLVGDRERGGAWTRAILALPARE 245
Query: 190 LHLCGDPAAVPLIQQILQVTGDD---VKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF 246
+HLCGD A L++ +L + V+ + Y RLSPL +GS+ +++ GDC+V F
Sbjct: 246 IHLCGDGRATELVETLLGTYRPNDVVVRHKPYSRLSPLFLSGKAIGSYRSLRKGDCVVVF 305
Query: 247 SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 306
SR I R+K IE + +VYG+LPPETR Q FN EFDVLVASD IG+GLN
Sbjct: 306 SRWDIMRVKADIERSTRWRVCVVYGTLPPETRRDQINSFN--RQEFDVLVASDCIGLGLN 363
Query: 307 LNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG--SKFPVGEVTCLDSEDLPLLH 364
NI R+IFST+ K+DG+E R L E +QI GRAGRYG + G V C+ + LP L
Sbjct: 364 FNIRRVIFSTVHKYDGIETRQLLPTEFRQIGGRAGRYGLSAGAEGGVVACMHEDHLPALF 423
Query: 365 KSL----------------LEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLEN 408
L S + A L P ++ S H +++ + E L
Sbjct: 424 AGFGLEWTEDTFEKEVPNQLIISDTVTQAALLPESSIL---SAFHCEAAA-ALGEECLSA 479
Query: 409 AKLSENYF-FANCEEVLKVATVIDQLP-----------LRLHEKYLFCISPVDMNDDISS 456
AK+ + A+ + + + T +++ L + FC +PVD ND I
Sbjct: 480 AKVFSTFADVAHTDPICYLGTWSNRMANIAKCLADIEELSFQQVVEFCSAPVDPNDPIVL 539
Query: 457 QGLTQFATN 465
GL FA +
Sbjct: 540 SGLRTFAQS 548
>gi|402225788|gb|EJU05849.1| P-loop containing nucleoside triphosphate hydrolase protein,
partial [Dacryopinax sp. DJM-731 SS1]
Length = 281
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 132/271 (48%), Positives = 182/271 (67%), Gaps = 7/271 (2%)
Query: 81 LHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANV-----SCDLITGQE 135
+HVGPTNSGKTHQAL L + +G+Y GPLRLLA E+ KR+N + +C+L+TG+E
Sbjct: 1 MHVGPTNSGKTHQALQALVRARTGVYAGPLRLLAHEIWKRVNTGQIDGLARTCNLLTGEE 60
Query: 136 REEV-DGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCG 194
+ V + A H A TVEM ++ D V+DEIQ+L RG S+ + LLG A E+H+CG
Sbjct: 61 QRWVGERASHLACTVEMTPCGTELDVVVLDEIQLLADPDRGSSWMQVLLGANAQEVHVCG 120
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYR 253
+ AV L+Q+I + GD V+V+ YERL+PL L G + IQ GD IV F+R+ I++
Sbjct: 121 EDTAVGLVQRIAEECGDVVEVRRYERLTPLKMAKQSLNGDLTKIQPGDAIVAFNRNHIFQ 180
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ K + + H ++ YG++PPE R +QA FND S +VLVASDAIGMGLNL I R+I
Sbjct: 181 IAKQVTEKTGHATALAYGAMPPEVRNQQARIFNDPGSSLNVLVASDAIGMGLNLKIKRVI 240
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
F M K++G E+ +L+ + KQIAGRAGR+G
Sbjct: 241 FHRMTKWNGTEVVELSPSQAKQIAGRAGRFG 271
>gi|84997776|ref|XP_953609.1| ATP-dependent RNA helicase [Theileria annulata]
gi|65304606|emb|CAI72931.1| ATP-dependent RNA helicase, putative [Theileria annulata]
Length = 823
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 142/318 (44%), Positives = 196/318 (61%), Gaps = 13/318 (4%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQER 136
R V LHVGP NSGKTH A+ L SSSSG+YC PLRLLAWE+ +N + + C L+TGQE
Sbjct: 175 RNVYLHVGPPNSGKTHDAIKALLSSSSGVYCAPLRLLAWEMFNTINNSGIKCALLTGQEV 234
Query: 137 EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDP 196
+ +G H + TVEM ++ AV+DE+QM+G TRG+S+T+A L + ELH+CG
Sbjct: 235 VD-NGESHVSCTVEMIPFERRFEVAVLDEMQMIGDLTRGYSWTKAFLSLNVPELHICGSK 293
Query: 197 AAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKK 256
+ + + + + GD ++V +ERL L ++ +G ++ GDC+V FSR + ++
Sbjct: 294 SCISITANLANIRGDKLEVFEHERLGNLKVMDKTIG-LDELEPGDCVVCFSRFDAFTIRN 352
Query: 257 AIESRG------KHLC--SIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308
IES K C SIVYG LPPETR Q RFN ++ VL+ASD IGMG+N +
Sbjct: 353 NIESMNYTWNNMKEECVTSIVYGLLPPETRYEQIERFNKGVTK--VLIASDVIGMGVNAS 410
Query: 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL 368
I R+IF + KFDG LR LTV EV QIAGRAGR+G P G V+C+ +DL L + +
Sbjct: 411 IRRLIFYRLTKFDGNLLRPLTVSEVHQIAGRAGRFGI-IPEGFVSCVREQDLKTLRELMN 469
Query: 369 EPSPMLESAGLFPNFDLI 386
+ ++ A + P D I
Sbjct: 470 KEVSQIDKAVISPPLDTI 487
>gi|225386707|ref|ZP_03756471.1| hypothetical protein CLOSTASPAR_00455 [Clostridium asparagiforme
DSM 15981]
gi|225047185|gb|EEG57431.1| hypothetical protein CLOSTASPAR_00455 [Clostridium asparagiforme
DSM 15981]
Length = 710
Score = 259 bits (663), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 142/318 (44%), Positives = 201/318 (63%), Gaps = 5/318 (1%)
Query: 64 RPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK 123
+P YP AR+ R+ ILH+GPTNSGKTH AL RL+ + G Y GPLRLLA EV RLN
Sbjct: 164 KPELEYPGAREMKRRFILHIGPTNSGKTHDALERLKQCAHGAYFGPLRLLALEVYDRLNT 223
Query: 124 ANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALL 183
++C +ITG+E E+ GA +A TVEM + +D AV+DE QM+ RG ++TRA+L
Sbjct: 224 EGLACSMITGEETLEIPGALCQACTVEMLNDHEYFDIAVVDECQMIADPYRGHNWTRAIL 283
Query: 184 GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCI 243
G+ A E+HLC P A ++ Q+++ GD K+ ++R + L P +++ GD +
Sbjct: 284 GLRAEEIHLCMAPEAEDIVVQMIRRCGDQFKIIRHKRNTRLTLQEEPYVLGRDLKKGDAL 343
Query: 244 VTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM 303
+ FS+ ++ L +E++G H CS++YG+LPP TR Q RF + E +V+V++DAIGM
Sbjct: 344 IVFSKKSVLALAAHLENQGVH-CSVIYGNLPPATRREQVRRF--LAKETEVVVSTDAIGM 400
Query: 304 GLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLL 363
GLNL I RI+F +KFDGV R L E+KQIAGRAGRYG + G V +D D+
Sbjct: 401 GLNLPIRRIVFVETRKFDGVNKRTLNPEEIKQIAGRAGRYGL-YDEGFVAAVDDVDVIAD 459
Query: 364 HKSLLEPSPMLESAGLFP 381
S L P P++++ FP
Sbjct: 460 GLSRL-PLPIMKAYVGFP 476
>gi|188579978|ref|YP_001923423.1| helicase domain-containing protein [Methylobacterium populi BJ001]
gi|179343476|gb|ACB78888.1| helicase domain protein [Methylobacterium populi BJ001]
Length = 778
Score = 258 bits (660), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 150/407 (36%), Positives = 237/407 (58%), Gaps = 12/407 (2%)
Query: 72 ARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLI 131
AR+ R+++ H+GPTNSGKT+ AL L ++ +G Y PLRLLA E + L + + ++
Sbjct: 303 ARRLNRRILFHMGPTNSGKTYAALQALTAAPTGAYLAPLRLLALENYEALRERGLRAGMV 362
Query: 132 TGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH 191
TG+E H A T+E AD+ D AVIDEIQML RG+++T AL G+ A +
Sbjct: 363 TGEEVLGEPDPTHTARTIETADLTRPIDVAVIDEIQMLSDPDRGWAWTNALFGVPARTVI 422
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
+CG A+ +++ + + ++V +ER SPL+ L+ P+ ++ GD +V FSR A+
Sbjct: 423 VCGSDDALSYVRRAAEAANESLEVIPFERKSPLILLDEPV-PLEKVEPGDAVVAFSRRAV 481
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-IS 310
+ ++ + +RG H + +YG+L PE R +A RF+ S E D+LV +DAIGMGLNL +
Sbjct: 482 HENREILVARG-HRVATIYGALSPEVRRAEAARFH--SGEADILVTTDAIGMGLNLGPLK 538
Query: 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEP 370
RI+FS M+K+DGV R LT E++QIAGRAGRYG VG V D + + ++ L
Sbjct: 539 RIVFSAMRKWDGVGERALTNSEIRQIAGRAGRYG-HHEVGYVAATDPTAIEPI-RAALAG 596
Query: 371 SPMLESAG----LFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANC-EEVLK 425
+P +A + P+ I + SL+ ++ HF + + F + EEVL+
Sbjct: 597 APTAPAADTRFYVRPDLTAIRSVAEEMRTPSLHEVMTHFARATFYAGSPFQPSALEEVLE 656
Query: 426 VATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIV 472
+A +ID+ L + EK++F + P+D D+I+ L +++ + G V
Sbjct: 657 IARIIDRARLPIEEKFVFSVCPIDRRDEIAMGMLERWSQVRAAGGAV 703
>gi|162148002|ref|YP_001602463.1| ATP-dependent RNA helicase [Gluconacetobacter diazotrophicus PAl 5]
gi|161786579|emb|CAP56161.1| ATP-dependent RNA helicase [Gluconacetobacter diazotrophicus PAl 5]
Length = 821
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 154/407 (37%), Positives = 234/407 (57%), Gaps = 16/407 (3%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+ AR R++ L GPTNSGK+H AL L + SG+ PLRLLA E + L V
Sbjct: 304 FKTARALKRRITLVTGPTNSGKSHTALEALARAESGMALAPLRLLAHEFREALTARGVPT 363
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
L TG+ER ++ G++H A TVEM + + D A+IDE QML RG ++T A++G A
Sbjct: 364 SLATGEERIDIPGSRHLAATVEMCPLHNPVDVAMIDEAQMLSDPDRGAAWTAAIMGAPAR 423
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
L + G P +P++++I ++ GD + ER PLV + P+ +++ D ++ FSR
Sbjct: 424 HLFVLGAPDCIPMVRRIAELCGDPLDEVHLERKGPLVTASEPV-RLQDLKPHDALIAFSR 482
Query: 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308
+ L+ A+ +RG+ + ++VYG+L PE R +A RFND E D+L+A+DAIGMGLNL
Sbjct: 483 REVLDLRAALLARGRRV-AVVYGALSPEVRRAEAQRFND--GEADILIATDAIGMGLNLT 539
Query: 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL 368
I R+IF+ ++KFDG + RDL EVKQI GRAGRYG K G V L ++++
Sbjct: 540 IRRVIFTALRKFDGTQTRDLNAQEVKQIGGRAGRYG-KHEQGVVAVLAGAGSASFIRAMM 598
Query: 369 EPSPMLESAGLF----PNFDLIYMYSRLHPDSSLYGILEHFLENAKL---SENYFFANCE 421
+P E A L P+ D+I + SL+G+L + A L NY AN E
Sbjct: 599 A-APPAELADLRPQVQPDADIIQAVAAEIGSESLFGVLAR-IRRAVLRPDDPNYRLANME 656
Query: 422 EVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYS 467
+ +AT ++ + L L +++++ + PVD D+ Q L +A +++
Sbjct: 657 QAFAIATALEGVSGLSLAQRWVYAMCPVDDRDN-GIQRLIHWAADHA 702
>gi|209542618|ref|YP_002274847.1| helicase domain-containing protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|209530295|gb|ACI50232.1| helicase domain protein [Gluconacetobacter diazotrophicus PAl 5]
Length = 815
Score = 258 bits (659), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 154/407 (37%), Positives = 234/407 (57%), Gaps = 16/407 (3%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+ AR R++ L GPTNSGK+H AL L + SG+ PLRLLA E + L V
Sbjct: 298 FKTARALKRRITLVTGPTNSGKSHTALEALARAESGMALAPLRLLAHEFREALTARGVPT 357
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
L TG+ER ++ G++H A TVEM + + D A+IDE QML RG ++T A++G A
Sbjct: 358 SLATGEERIDIPGSRHLAATVEMCPLHNPVDVAMIDEAQMLSDPDRGAAWTAAIMGAPAR 417
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
L + G P +P++++I ++ GD + ER PLV + P+ +++ D ++ FSR
Sbjct: 418 HLFVLGAPDCIPMVRRIAELCGDPLDEVHLERKGPLVTASEPV-RLQDLKPHDALIAFSR 476
Query: 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308
+ L+ A+ +RG+ + ++VYG+L PE R +A RFND E D+L+A+DAIGMGLNL
Sbjct: 477 REVLDLRAALLARGRRV-AVVYGALSPEVRRAEAQRFND--GEADILIATDAIGMGLNLT 533
Query: 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL 368
I R+IF+ ++KFDG + RDL EVKQI GRAGRYG K G V L ++++
Sbjct: 534 IRRVIFTALRKFDGTQTRDLNAQEVKQIGGRAGRYG-KHEQGVVAVLAGAGSASFIRAMM 592
Query: 369 EPSPMLESAGLF----PNFDLIYMYSRLHPDSSLYGILEHFLENAKL---SENYFFANCE 421
+P E A L P+ D+I + SL+G+L + A L NY AN E
Sbjct: 593 A-APPAELADLRPQVQPDADIIQAVAAEIGSESLFGVLAR-IRRAVLRPDDPNYRLANME 650
Query: 422 EVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYS 467
+ +AT ++ + L L +++++ + PVD D+ Q L +A +++
Sbjct: 651 QAFAIATALEGVSGLSLAQRWVYAMCPVDDRDN-GIQRLIHWAADHA 696
>gi|393769812|ref|ZP_10358330.1| helicase domain-containing protein [Methylobacterium sp. GXF4]
gi|392724769|gb|EIZ82116.1| helicase domain-containing protein [Methylobacterium sp. GXF4]
Length = 713
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 149/409 (36%), Positives = 239/409 (58%), Gaps = 10/409 (2%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+ AR+ R+++ H+GPTNSGKT+ AL L ++++G Y PLRLLA E + L + +
Sbjct: 236 FAAARRLNRRILFHMGPTNSGKTYAALQMLTAAANGTYLAPLRLLALENYETLRERGLRA 295
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
++TG+E H A T+E AD+ D AVIDEIQML RG+++T AL G+ A
Sbjct: 296 GMVTGEEVLGEPEPTHTARTIETADLTRPIDVAVIDEIQMLSDPDRGWAWTNALFGVPAR 355
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
+ +CG A+ +++ + G+ ++V + R SPL+ L+ P+ ++ GD +V FSR
Sbjct: 356 TVVVCGSDDALSYVRRAAEAAGESLEVIPFTRKSPLLLLDAPV-PLEKVEPGDAVVAFSR 414
Query: 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308
A++ ++ + +RG H + +YG+L PE R +ATRF + E +VLV +DAIGMGLNL
Sbjct: 415 RAVHENREILVARG-HRVATIYGALSPEVRRAEATRFR--TGEANVLVTTDAIGMGLNLG 471
Query: 309 -ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSL 367
+ RI+FST++K+DG + R LT E++QIAGRAGRYG + VG V D+ + + +L
Sbjct: 472 PLRRIVFSTVRKWDGTKERGLTNSEIRQIAGRAGRYGHQ-DVGYVAATDAIAIEPIRIAL 530
Query: 368 L-EPSPMLESAGLF--PNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANC-EEV 423
P+ + F P+ I + SL+ +L HF + + F + EE+
Sbjct: 531 SGAPTAPAADSRFFVRPDLGAIRSVAEEMQTQSLHEVLTHFARATFYAGSPFQPSALEEI 590
Query: 424 LKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIV 472
L+VA VID+ L + EK+ F + P++ D+I+ L +++ + + V
Sbjct: 591 LEVARVIDRARLPIEEKFAFSVCPINRRDEIAMGMLERWSQARAARTTV 639
>gi|240137314|ref|YP_002961783.1| hypothetical protein MexAM1_META1p0574 [Methylobacterium extorquens
AM1]
gi|418061704|ref|ZP_12699547.1| helicase domain-containing protein [Methylobacterium extorquens DSM
13060]
gi|240007280|gb|ACS38506.1| conserved hypothetical protein with putative ATP-dependent helicase
domain [Methylobacterium extorquens AM1]
gi|373564756|gb|EHP90842.1| helicase domain-containing protein [Methylobacterium extorquens DSM
13060]
Length = 714
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 150/402 (37%), Positives = 242/402 (60%), Gaps = 14/402 (3%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+ AR+ R+++ H+GPTNSGKT+ AL L ++ +G Y PLRLLA E + L++ +
Sbjct: 236 FAAARRLSRRILFHMGPTNSGKTYAALQALSAAPTGAYLAPLRLLALENYEALSERGLRA 295
Query: 129 DLITGQE-REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA 187
++TG+E E+D H A T+E AD+ D AVIDEIQML RG+++T AL G+ A
Sbjct: 296 GMVTGEEVLGELD-PTHTARTIETADLTRPIDVAVIDEIQMLSDPDRGWAWTNALFGVPA 354
Query: 188 NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFS 247
+ +CG A+ +++ + + ++V ++ER SPLV L+ P+ ++ GD +V FS
Sbjct: 355 RTVIVCGSDDALSYVRRAAEAANESLEVINFERKSPLVLLDEPV-PLEKVEPGDAVVAFS 413
Query: 248 RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307
R A++ ++ + +RG H + +YG+L PE R +A RF S E +VLV +DAIGMGLNL
Sbjct: 414 RRAVHENREILVARG-HRVATIYGALSPEVRRAEAARFR--SGEANVLVTTDAIGMGLNL 470
Query: 308 N-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKS 366
+ RI+FST++K+DGV+ R LT E++QIAGRAGRYG + VG V + + + ++
Sbjct: 471 GPLKRIVFSTVRKWDGVQERVLTNSEIRQIAGRAGRYGHQ-DVGYVAATEPNAVEPI-RT 528
Query: 367 LLEPSPMLESAG----LFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANC-E 421
L +P +A + P+ I + SLY ++ HF + + F + E
Sbjct: 529 ALAGAPTAPAADTRFYVRPDLTAIRSVAEEMRTPSLYEVMTHFARATFYAGSPFQPSALE 588
Query: 422 EVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFA 463
EVL++A +ID+ L + EK++F + P++ D+I+ L +++
Sbjct: 589 EVLEIARIIDRARLPIEEKFIFSVCPINRRDEIAMGMLERWS 630
>gi|406694623|gb|EKC97947.1| RNA helicase like protein [Trichosporon asahii var. asahii CBS
8904]
Length = 700
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 163/432 (37%), Positives = 230/432 (53%), Gaps = 37/432 (8%)
Query: 57 FDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWE 116
TD++ + AR R LH+GPTNSGKT+ AL L + +G+Y GPLRLLA E
Sbjct: 213 LQITDISNVAQTHVAARSMNRNFHLHMGPTNSGKTYSALKALSKAKTGVYAGPLRLLAHE 272
Query: 117 VAKRLNKANV--------SCDLITGQEREEV-DGAKHRAVTVEMADVVS-----DYDCAV 162
V +R+N V +C+L+TG+ER V A + TVEM + +D V
Sbjct: 273 VWERINLGTVGGMDGEGRACNLLTGEERRLVAQDAGLMSCTVEMMPLQGFMGGEPWDVVV 332
Query: 163 IDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQ-VTGDDVKVQSYERL 221
IDEIQMLG RG ++ A++G+ A E+HLCGD L+ +++ GD + V Y RL
Sbjct: 333 IDEIQMLGDSERGAAWANAVMGVAAKEIHLCGDETTEKLLHEMIAGFKGDTLTVHKYNRL 392
Query: 222 SPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 280
+PL + L S +Q GDC+VTFSR ++ LK IE + ++VYG+LPPETR
Sbjct: 393 TPLKIADKSLHSDMKKVQAGDCVVTFSRSNVFALKNQIERQLGTKAAVVYGALPPETRAE 452
Query: 281 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 340
QA FN+ ++ VLVASDA+GMGLNL I+RIIF T+ K++G + L+V KQIAGRA
Sbjct: 453 QARDFNEGRAQ--VLVASDAVGMGLNLKINRIIFETLWKWNGKQEVPLSVSSAKQIAGRA 510
Query: 341 GRYGSKFPV----------------GEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD 384
GR+G + G VT L +D LL L P ++ A + P +
Sbjct: 511 GRFGQQRTSAAVDTATTGDAPGDTGGTVTTLHEDDFALLKSLLGRTLPSVKRAVIEPPSE 570
Query: 385 LIYMYSRLHP-DSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP--LRLHEKY 441
+ L P +S ++EHF AKL A+ +A +++ L L E
Sbjct: 571 ALTALQPLLPAKTSFESLIEHFWALAKLPPRTVLASSTSKTTIAPILEPFRNILTLSELQ 630
Query: 442 LFCISPVDMNDD 453
L +P+ D+
Sbjct: 631 LLANAPLPARDE 642
>gi|160935116|ref|ZP_02082499.1| hypothetical protein CLOBOL_00011 [Clostridium bolteae ATCC
BAA-613]
gi|158441847|gb|EDP19544.1| hypothetical protein CLOBOL_00011 [Clostridium bolteae ATCC
BAA-613]
Length = 665
Score = 256 bits (654), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 140/319 (43%), Positives = 198/319 (62%), Gaps = 5/319 (1%)
Query: 64 RPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK 123
+P YP AR+ R+ ILHVGPTNSGKTH AL RL+ G Y GPLRLLA EV +LN
Sbjct: 157 KPEQEYPGAREMKRRFILHVGPTNSGKTHDALERLKECRHGAYFGPLRLLALEVYDKLNT 216
Query: 124 ANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALL 183
+SC ++TG+E EV GA ++ TVEM + +D V+DE QM+ RG ++TRA+L
Sbjct: 217 EGLSCSMVTGEETLEVPGAVCQSCTVEMLNDHEYFDIVVVDECQMIADPYRGHNWTRAVL 276
Query: 184 GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCI 243
G+ A E+HLC P A ++ Q+++ GD +V ++R + L P +++ GD +
Sbjct: 277 GLRAEEIHLCMAPEAEDIVVQMIKRCGDQYRVVRHKRNTRLTMEKKPYNLKQDLKKGDAL 336
Query: 244 VTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM 303
+ FS+ ++ L +E+ G H CS++YGSLPP TR Q RF + E +V+V++DAIGM
Sbjct: 337 IVFSKKSVLALAAHLENEGIH-CSVIYGSLPPATRREQVRRF--LARETEVVVSTDAIGM 393
Query: 304 GLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLL 363
GLNL I RI+F +KFDGV R L E+KQIAGRAGRYG + G V +D ++
Sbjct: 394 GLNLPIRRIVFVETRKFDGVNKRTLNPEEIKQIAGRAGRYGL-YDEGFVAAIDEPEVIED 452
Query: 364 HKSLLEPSPMLESAGLFPN 382
S + P P++++ FP
Sbjct: 453 GLSRM-PMPIMKAYVGFPE 470
>gi|302668561|ref|YP_003833009.1| helicase domain-containing protein [Butyrivibrio proteoclasticus
B316]
gi|302397525|gb|ADL36427.1| helicase domain-containing protein [Butyrivibrio proteoclasticus
B316]
Length = 699
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 132/297 (44%), Positives = 196/297 (65%), Gaps = 8/297 (2%)
Query: 67 TWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANV 126
T +PLARK R +LH+GPTNSGKT+QA+ L + SGIY PLRLLA+E + +N
Sbjct: 204 TLFPLARKMKRHFVLHIGPTNSGKTYQAVQELMEADSGIYLAPLRLLAYEQYESMNNNGC 263
Query: 127 SCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC 186
C +ITG+ER V G+ H++ T+EM + ++D A+IDE QM+ + RG S+T A+LG+
Sbjct: 264 PCSMITGEERILVPGSFHQSSTIEMMSIRDEWDMAIIDEAQMVADRQRGGSWTAAILGLR 323
Query: 187 ANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF---SNIQTGDCI 243
A ++H+C P A L+ ++++ GD ++V +ER +PL ++ +F +++ GD +
Sbjct: 324 AKKIHVCASPDAEKLLTRMIKSCGDIMEVVHHERKTPL-EMDEEASNFRFPEDVKKGDAL 382
Query: 244 VTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM 303
+ FSR ++ + ++ G CSI+YGSLP + R R+A +F D E DV+VA+DAIGM
Sbjct: 383 IVFSRKDVHSVAAELQDSG-LTCSIIYGSLPYDVRHREAGKFADG--ETDVVVATDAIGM 439
Query: 304 GLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL 360
G+NL I R++F K+DG++ R LTV E+KQIAGRAGRYG K+ VG VT D+
Sbjct: 440 GMNLPIRRVVFLETVKYDGIKERPLTVSEIKQIAGRAGRYG-KYDVGYVTSYYDYDI 495
>gi|355678524|ref|ZP_09061015.1| hypothetical protein HMPREF9469_04052 [Clostridium citroniae
WAL-17108]
gi|354812478|gb|EHE97094.1| hypothetical protein HMPREF9469_04052 [Clostridium citroniae
WAL-17108]
Length = 668
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 145/364 (39%), Positives = 214/364 (58%), Gaps = 23/364 (6%)
Query: 64 RPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK 123
+P YP AR+ R+ ILHVGPTNSGKTH AL RL+ G Y GPLRLLA EV +LN
Sbjct: 158 KPEEEYPGAREMKRRFILHVGPTNSGKTHDALERLKECGHGAYFGPLRLLALEVYDKLNA 217
Query: 124 ANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALL 183
+ C +ITG+E EV G+ ++ TVEM + +D V+DE QM+ RG ++TRA+L
Sbjct: 218 EGLPCSMITGEETLEVPGSICQSCTVEMLNDHEYFDIVVVDECQMIADPYRGHNWTRAVL 277
Query: 184 GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCI 243
G+ A+E+HLC P A ++ Q+++ GD +V ++R + L + P +++ GD +
Sbjct: 278 GLRADEIHLCMAPEAEDIVVQMIKRCGDQYRVVRHKRNTRLTMESKPYNLKRDLKKGDAL 337
Query: 244 VTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM 303
+ FS+ ++ L +E+ G H CS++YGSLPP TR Q RF + E +V+V++DAIGM
Sbjct: 338 IVFSKKSVLALAAHLENEGIH-CSVIYGSLPPATRREQVRRF--LAKETEVVVSTDAIGM 394
Query: 304 GLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED---- 359
GLNL I RI+F +KFDGV R LT E+KQIAGRAGR+G + G V+ +D +
Sbjct: 395 GLNLPIRRIVFVETRKFDGVNKRTLTPEEIKQIAGRAGRFGL-YDEGFVSAIDEPEVIRD 453
Query: 360 ------LPLLHKSLLEPSPMLESAG-------LFPNFDLIYMYSRLHPDS--SLYGILEH 404
+P++ + P +L ++ + D +Y ++ D +LY EH
Sbjct: 454 GLSRLPIPIMKAYVGFPEQLLNLPAEIDTLVKIWASMDTPSIYEKMEVDELLALYMTFEH 513
Query: 405 FLEN 408
+N
Sbjct: 514 VHQN 517
>gi|357054823|ref|ZP_09115903.1| hypothetical protein HMPREF9467_02875 [Clostridium clostridioforme
2_1_49FAA]
gi|355383869|gb|EHG30942.1| hypothetical protein HMPREF9467_02875 [Clostridium clostridioforme
2_1_49FAA]
Length = 665
Score = 256 bits (653), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 140/319 (43%), Positives = 198/319 (62%), Gaps = 5/319 (1%)
Query: 64 RPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK 123
+P YP AR+ R+ ILHVGPTNSGKTH AL RL+ G Y GPLRLLA EV +LN
Sbjct: 157 KPEQEYPGAREMKRRFILHVGPTNSGKTHDALERLKECRHGAYFGPLRLLALEVYDKLNT 216
Query: 124 ANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALL 183
+SC ++TG+E EV GA ++ TVEM + +D V+DE QM+ RG ++TRA+L
Sbjct: 217 EGLSCSMVTGEETLEVPGAVCQSCTVEMLNDHEYFDIVVVDECQMIADPYRGHNWTRAVL 276
Query: 184 GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCI 243
G+ A E+HLC P A ++ Q+++ GD +V ++R + L P +++ GD +
Sbjct: 277 GLRAEEIHLCMAPEAEDIVVQMIKRCGDRYRVVRHKRNTRLTMEKKPYNLKRDLKKGDAL 336
Query: 244 VTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM 303
+ FS+ ++ L +E+ G H CS++YGSLPP TR Q RF + E +V+V++DAIGM
Sbjct: 337 IVFSKKSVLALAAHLENEGIH-CSVIYGSLPPATRREQVRRF--LARETEVVVSTDAIGM 393
Query: 304 GLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLL 363
GLNL I RI+F +KFDGV R L E+KQIAGRAGRYG + G V +D ++
Sbjct: 394 GLNLPIRRIVFVETRKFDGVNKRTLNPEEIKQIAGRAGRYGL-YDEGFVAAIDEAEVIED 452
Query: 364 HKSLLEPSPMLESAGLFPN 382
S + P P++++ FP
Sbjct: 453 GLSRM-PMPIMKAYVGFPE 470
>gi|218528785|ref|YP_002419601.1| helicase [Methylobacterium extorquens CM4]
gi|218521088|gb|ACK81673.1| helicase domain protein [Methylobacterium extorquens CM4]
Length = 714
Score = 255 bits (652), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 151/404 (37%), Positives = 240/404 (59%), Gaps = 18/404 (4%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+ AR+ R+++ H+GPTNSGKT+ AL L ++ +G Y PLRLLA E + L++ +
Sbjct: 236 FAAARRLNRRILFHMGPTNSGKTYAALQALSAAPTGAYLAPLRLLALENYEALSERGLRA 295
Query: 129 DLITGQEREEVDGA---KHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI 185
++TG EEV G H A T+E AD+ D AVIDEIQML RG+++T AL G+
Sbjct: 296 GMVTG---EEVLGELDPTHTARTIETADLTRPIDVAVIDEIQMLSDPDRGWAWTNALFGV 352
Query: 186 CANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVT 245
A + +CG A+ +++ + + ++V ++ER SPLV L+ P+ ++ GD +V
Sbjct: 353 PARTVIVCGSDDALSYVRRAAEAANESLEVINFERKSPLVLLDEPV-PLEKVEPGDAVVA 411
Query: 246 FSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGL 305
FSR A++ ++ + +RG H + +YG+L PE R +A RF S E +VLV +DAIGMGL
Sbjct: 412 FSRRAVHENREILVARG-HRVATIYGALSPEVRRAEAARFR--SGEANVLVTTDAIGMGL 468
Query: 306 NLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLH 364
NL + RI+FST++K+DGV+ R LT E++QIAGRAGRYG + VG V + + +
Sbjct: 469 NLGPLKRIVFSTVRKWDGVQERVLTNSEIRQIAGRAGRYGHQ-DVGYVAATEPTAVEPI- 526
Query: 365 KSLLEPSPMLESAG----LFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANC 420
++ L +P +A + P+ I + SLY ++ HF + + F +
Sbjct: 527 RTALAGAPTAPAADTRFYVRPDLTAIRSVAEEMRTPSLYEVMTHFARATFYAGSPFQPSA 586
Query: 421 -EEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFA 463
EEVL++A +ID L + EK++F + P++ D+I+ L +++
Sbjct: 587 LEEVLEIARIIDWARLPIEEKFIFSVCPINRRDEIAMGMLERWS 630
>gi|163850244|ref|YP_001638287.1| helicase domain-containing protein [Methylobacterium extorquens
PA1]
gi|163661849|gb|ABY29216.1| helicase domain protein [Methylobacterium extorquens PA1]
Length = 714
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 150/402 (37%), Positives = 242/402 (60%), Gaps = 14/402 (3%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+ AR+ R+++ H+GPTNSGKT+ AL L ++ +G Y PLRLLA E + L++ +
Sbjct: 236 FAAARRLNRRILFHMGPTNSGKTYAALQALSAAPTGAYLAPLRLLALENYEALSERGLRA 295
Query: 129 DLITGQE-REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA 187
++TG+E E+D H A T+E AD+ D AVIDEIQML RG+++T AL G+ A
Sbjct: 296 GMVTGEEVLGELD-PTHTARTIETADLTRPIDVAVIDEIQMLSDPDRGWAWTNALFGVPA 354
Query: 188 NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFS 247
+ +CG A+ +++ + + ++V ++ER SPLV L+ P+ ++ GD +V FS
Sbjct: 355 RTVIVCGSDDALSYVRRAAEAANESLEVINFERKSPLVLLDDPV-PLEKVEPGDAVVAFS 413
Query: 248 RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307
R A++ ++ + +RG H + +YG+L PE R +A RF S E +VLV +DAIGMGLNL
Sbjct: 414 RRAVHENREILVARG-HRVATIYGALSPEVRRAEAARFR--SGEANVLVTTDAIGMGLNL 470
Query: 308 N-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKS 366
+ RI+FST++K+DGV+ R LT E++QIAGRAGRYG + VG V + + + ++
Sbjct: 471 GPLKRIVFSTVRKWDGVQERVLTNSEIRQIAGRAGRYGHQ-DVGYVAATEPTAVEPI-RT 528
Query: 367 LLEPSPMLESAG----LFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANC-E 421
L +P +A + P+ I + SLY ++ HF + + F + E
Sbjct: 529 ALAGAPTAPAADTRFYVRPDLTAIRSVAEEMRTPSLYEVMTHFARATFYAGSPFQPSALE 588
Query: 422 EVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFA 463
EVL++A +ID+ L + EK++F + P++ D+I+ L +++
Sbjct: 589 EVLEIARIIDRARLPIEEKFIFSVCPINRRDEIAMGMLERWS 630
>gi|401428675|ref|XP_003878820.1| putative RNA helicase [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322495069|emb|CBZ30372.1| putative RNA helicase [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 687
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 161/479 (33%), Positives = 245/479 (51%), Gaps = 69/479 (14%)
Query: 62 LTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL 121
+ RP WYP AR R+ I H GPTNSGKTH AL L + SG+YC PL+ LA +V R+
Sbjct: 126 MHRPWDWYPQARLMRRRFIFHYGPTNSGKTHAALEALMQARSGVYCAPLKALAAQVWHRV 185
Query: 122 NKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRA 181
K V CDL+ G ER A+H + TVEM V D V+DEIQM+ + RG+++TRA
Sbjct: 186 -KERVPCDLLIGDERVFGGAAEHVSCTVEMTPVDLPVDVGVVDEIQMMADRDRGWAWTRA 244
Query: 182 LLGICANELHLCGDPAAVPLIQQILQVTGD--DVKVQSYERLSPLV--PLNVPLGSFSNI 237
LLG+ A E+HLCG+ A+PLIQ +L T + ++ ++RL PLV P +
Sbjct: 245 LLGLPAREIHLCGEARALPLIQNLLYATHERKNLSTVEHKRLVPLVVSPSLCSRLRLETV 304
Query: 238 QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEF----- 292
+ GDC V FS+ + L+ + S +YG++P + R +A RFN +E+
Sbjct: 305 ENGDCFVCFSKKQVLDLQDNLNRLPGVTSSAIYGAMPFQVREAEAARFNRGVTEYINAFA 364
Query: 293 -----------------------------------DVLVASDAIGMGLNLNISRIIFSTM 317
VLV++DAI GLN+NI R++F+T+
Sbjct: 365 SCSANAKNNAADCSTTSPRGTQPRESSPETATPTKHVLVSTDAIAYGLNMNIERVVFTTL 424
Query: 318 KKFDGVELRDLTVPEVKQIAGRAGRYG--SKFPVGEVTCLDSEDLPLLHKSL---LEPSP 372
+KFDG + +L V+QIAGR+GR+G + VG T L D+ ++ LEP
Sbjct: 425 RKFDGKGMVELPAATVQQIAGRSGRFGLTRQHTVGRCTVLHECDMTAFSVAMSTQLEP-- 482
Query: 373 MLESAGLFPNFDLIYMYSRLH--------------PDSSLYGILEHFLENAKLSENYFFA 418
L AGL P D++ +++ L D S + ++ F + S+N+F
Sbjct: 483 -LAKAGLLPTGDILQLFAELESAKARKAGKPTLGPSDGSFFELMSRFAASCAGSQNFFPC 541
Query: 419 NCEE-VLKVATVIDQL-PLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLR 475
+ +L++A +++ + L L ++ +FC P+ S Q + +AT+++ V LR
Sbjct: 542 DIHRSLLRLAELLEPVRDLSLTDRIVFCYLPLSDTSAASLQLIVAYATDHAAGKPVPLR 600
>gi|117924245|ref|YP_864862.1| helicase domain-containing protein [Magnetococcus marinus MC-1]
gi|117608001|gb|ABK43456.1| helicase domain protein [Magnetococcus marinus MC-1]
Length = 789
Score = 254 bits (649), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 155/417 (37%), Positives = 237/417 (56%), Gaps = 13/417 (3%)
Query: 66 HTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN 125
H +P AR+ R+ L++GPTNSGKT+QAL RL+ +++G Y PLRLLA EVA LN+
Sbjct: 258 HNLFP-ARENYRRFTLYLGPTNSGKTYQALQRLKDAATGCYLAPLRLLALEVADTLNEWG 316
Query: 126 VSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI 185
V C ++TG+ER V GAKH A T+EM + YD AVIDE QM+G RG+++T+A+LG+
Sbjct: 317 VPCSMVTGEERILVQGAKHTASTIEMLSTHTRYDVAVIDEAQMVGDADRGWAWTQAILGV 376
Query: 186 CANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVT 245
A E+ + P+A P+I+++L++T + V ERL+PL ++ P+ + + ++ G +V
Sbjct: 377 RAKEVCVIAAPSARPVIEKLLRLTEEPWDVVELERLTPLQTMSKPVEALAEMEPGTALVA 436
Query: 246 FSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGL 305
FSR + RLK +E C+ +YG+LPPE R QA FN S E LVA+DAIGMGL
Sbjct: 437 FSRAQVLRLKAEVEQATGKKCAALYGALPPEVRRMQARLFN--SGEAPYLVATDAIGMGL 494
Query: 306 NLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLH- 364
NL I I+F+ +K LT EV+QIAGRAGR+G EV + + + H
Sbjct: 495 NLPIKTILFAQDRKMINRTEHLLTPMEVRQIAGRAGRFGK----NEVGYVGTYRIGTAHI 550
Query: 365 -KSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLY--GILEHFLENAKLSEN-YFFANC 420
++LL ++ A L PN D + ++L D L + F++ K Y A+
Sbjct: 551 KQALLAVPFDVKKAHLAPNLDHLTAIAQLQEDQKLRLTRLFTLFIKTVKPDPALYELADL 610
Query: 421 EEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLRE 476
++ +A + D+ L L +++ +PV + + +K + L++
Sbjct: 611 DDQTTLARIADRHKQLDLPTRFMLSAAPVPLRATVVVTAFEHMVAAIAKNSPITLQD 667
>gi|154286238|ref|XP_001543914.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150407555|gb|EDN03096.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 636
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 130/255 (50%), Positives = 171/255 (67%), Gaps = 7/255 (2%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
DL P WYP AR R + LHVGPTNSGKT++AL RLE++ +G Y GPLRLLA E+
Sbjct: 157 LADLRNPTEWYPAARSLHRTIHLHVGPTNSGKTYRALKRLETAKTGFYAGPLRLLAHEIY 216
Query: 119 KRLNKANVSCDLITGQE----REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
RLN + C L+TG E +++V G + TVEM + D + VIDEIQM+ R
Sbjct: 217 TRLNAKGIPCGLVTGDEVRISQDQVPGIF--SNTVEMVPLGQDVEVGVIDEIQMIADPHR 274
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GS 233
G+++TRALLG A+ELHLCG+ VPLI+ + + GD +++ YERL+PL +N L G+
Sbjct: 275 GWAWTRALLGARAHELHLCGEERVVPLIRDLAGLMGDKLEIHHYERLNPLKAMNRSLKGN 334
Query: 234 FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293
SN+Q GDC+V FSR I+ LK+ IE +IVYGSLP E R++QA FND ++++D
Sbjct: 335 LSNLQKGDCVVAFSRIGIHGLKQDIEKATGRRAAIVYGSLPAEIRSQQADLFNDPNNDYD 394
Query: 294 VLVASDAIGMGLNLN 308
LVASDAIGMGLN N
Sbjct: 395 FLVASDAIGMGLNFN 409
>gi|253998438|ref|YP_003050501.1| helicase domain-containing protein [Methylovorus glucosetrophus
SIP3-4]
gi|253985117|gb|ACT49974.1| helicase domain protein [Methylovorus glucosetrophus SIP3-4]
Length = 497
Score = 253 bits (646), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 155/395 (39%), Positives = 230/395 (58%), Gaps = 17/395 (4%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+P+AR R ++GPTNSGKT++AL L+ ++SG+Y PLRLLA EV RL +A V C
Sbjct: 8 FPVARGMRRHFHFYLGPTNSGKTYEALQVLQQAASGVYLAPLRLLAMEVRDRLMEAGVPC 67
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
+L+TG+ER V GA+H A TVEM D AVIDEIQML + RG+++T AL+G+ A
Sbjct: 68 NLVTGEERHWVPGARHTACTVEMMRPDQVVDVAVIDEIQMLQDEARGYAWTAALVGVPAQ 127
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV-PLNVPLGSFSN-------IQTG 240
++ +CG A P+ +L+ + ++ ER +PL+ + G N +Q G
Sbjct: 128 QVFVCGSDAVTPICLALLESLNEPWQLTRLERKTPLILEEHAICGERYNRARLKGKLQKG 187
Query: 241 DCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 300
D ++ F+R + L I G + SI YG+L PE R ++ RF AS E DVLVA+DA
Sbjct: 188 DAVIAFTRKDVLTLSARIRQWGLSVASI-YGALSPEVRRTESRRF--ASGEADVLVATDA 244
Query: 301 IGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED- 359
IGMGLNL I R++F+T+ KFDGV R + E +QIAGRAGRYG +P G V +++++
Sbjct: 245 IGMGLNLPIRRVVFTTVHKFDGVASRLIGPTETRQIAGRAGRYGI-YPTGFVAAVEADEL 303
Query: 360 LPLLHKSLLEPSPMLESAGLFPNF-DLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFA 418
L L H S L+ + N+ D+ + R+H + + +LE F A S+ +
Sbjct: 304 LHLQHMLTTSDSAELQQLPVAANWPDIARLSQRVH-TARIGELLERFSRQALESDLFHLT 362
Query: 419 NCEEVLKVATVIDQLP--LRLHEKYLFCISPVDMN 451
+ E + + +IDQ + L +K+ F +PV +
Sbjct: 363 SAEGQIALGHLIDQQAPHMPLADKFRFSCAPVSFD 397
>gi|315925470|ref|ZP_07921681.1| ATP-dependent RNA helicase SUV3 [Pseudoramibacter alactolyticus
ATCC 23263]
gi|315621371|gb|EFV01341.1| ATP-dependent RNA helicase SUV3 [Pseudoramibacter alactolyticus
ATCC 23263]
Length = 712
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 126/276 (45%), Positives = 182/276 (65%), Gaps = 3/276 (1%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+PLAR+ R I HVGPTNSGKTH A+ ES+ G+Y PLRLLA E+A+R+N V+C
Sbjct: 223 FPLARELNRHFIFHVGPTNSGKTHDAIVACESALRGVYLAPLRLLAMEIAERMNADGVAC 282
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
++TG+E + GA H A T+EM YD AVIDE Q++ + RG+++T+A+LGI A
Sbjct: 283 SMVTGEEENRIPGANHMASTIEMMSEEQVYDVAVIDECQLIADRERGWAWTQAVLGIAAA 342
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
+H C P A+PL++ ++ GD +V +ER +PL + +++ GD +V FSR
Sbjct: 343 TVHACMAPEALPLMRALVTECGDSFEVVPHERATPLAMEPGDVAFPEDVRPGDALVVFSR 402
Query: 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308
++ + +E G+ + S++YG+LP R + +F S E D++VA+DAIGMG+NL
Sbjct: 403 RSVLQAASMLEDAGRRV-SVIYGALPYAARRAETHKF--LSGETDMVVATDAIGMGMNLP 459
Query: 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
+ RI+F +KFDGVE R+LT+PEVKQIAGRAGR G
Sbjct: 460 VKRIVFLETRKFDGVEKRELTIPEVKQIAGRAGRRG 495
>gi|313200515|ref|YP_004039173.1| helicase domain-containing protein [Methylovorus sp. MP688]
gi|312439831|gb|ADQ83937.1| helicase domain protein [Methylovorus sp. MP688]
Length = 502
Score = 253 bits (645), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 155/395 (39%), Positives = 230/395 (58%), Gaps = 17/395 (4%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+P+AR R ++GPTNSGKT++AL L+ ++SG+Y PLRLLA EV RL +A V C
Sbjct: 13 FPVARGMRRHFHFYLGPTNSGKTYEALQVLQQAASGVYLAPLRLLAMEVRDRLMEAGVPC 72
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
+L+TG+ER V GA+H A TVEM D AVIDEIQML + RG+++T AL+G+ A
Sbjct: 73 NLVTGEERHWVPGARHTACTVEMMRPDQVVDVAVIDEIQMLQDEARGYAWTAALVGVPAQ 132
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV-PLNVPLGSFSN-------IQTG 240
++ +CG A P+ +L+ + ++ ER +PL+ + G N +Q G
Sbjct: 133 QVFVCGSDAVTPICLALLESLDEPWQLTRLERKTPLILEEHAICGERYNRARLKGKLQKG 192
Query: 241 DCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 300
D ++ F+R + L I G + SI YG+L PE R ++ RF AS E DVLVA+DA
Sbjct: 193 DAVIAFTRKDVLTLSARIRQWGLSVASI-YGALSPEVRRTESRRF--ASGEADVLVATDA 249
Query: 301 IGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED- 359
IGMGLNL I R++F+T+ KFDGV R + E +QIAGRAGRYG +P G V +++++
Sbjct: 250 IGMGLNLPIRRVVFTTVHKFDGVASRLIGPTETRQIAGRAGRYGI-YPTGFVAAVEADEL 308
Query: 360 LPLLHKSLLEPSPMLESAGLFPNF-DLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFA 418
L L H S L+ + N+ D+ + R+H + + +LE F A S+ +
Sbjct: 309 LHLQHMLTTSDSAELQQLPVAANWPDIARLSQRVH-TARIGELLESFSRQALESDLFHLT 367
Query: 419 NCEEVLKVATVIDQLP--LRLHEKYLFCISPVDMN 451
+ E + + +IDQ + L +K+ F +PV +
Sbjct: 368 SAEGQIALGHLIDQQAPHMPLADKFRFSCAPVSFD 402
>gi|393760256|ref|ZP_10349068.1| helicase domain-containing protein [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393162068|gb|EJC62130.1| helicase domain-containing protein [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 1066
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 152/427 (35%), Positives = 242/427 (56%), Gaps = 37/427 (8%)
Query: 54 MKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLL 113
M+ DF ++ + LAR R ++ +GPTNSGKTH+AL L + SG+Y PLRLL
Sbjct: 547 MRLGDFPEM------FSLARGIRRHLVFRLGPTNSGKTHEALEALMEARSGVYLAPLRLL 600
Query: 114 AWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKT 173
A EV RL A + C+L+TG+ER V GA+H A TVEM D + AV+DEIQML +
Sbjct: 601 AMEVRDRLMNAGIPCNLVTGEERVMVPGAQHTACTVEMMDPTMEVRVAVLDEIQMLQDEQ 660
Query: 174 RGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL----VPLNV 229
RG+++T AL+G+ A L +CGD + + +++++ + ++++ ER +PL P+
Sbjct: 661 RGWAWTAALVGVPARTLFVCGDASVLRPCERLVRSMEETMELEFTERKTPLEVMPYPVEP 720
Query: 230 PLGS-------------------FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 270
P + + GD +V F+R + L ++G + +I Y
Sbjct: 721 PPATGRQGRQPAAWRGRKDRQREAQGVSKGDAVVAFTRKDVLTLSARYRAQGWKVATI-Y 779
Query: 271 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 330
G+L PE R ++ RF+ E DVLVA+DAIGMGLNL I R++FST+ KFDG +R L
Sbjct: 780 GALAPEVRRTESERFS--QGEADVLVATDAIGMGLNLPIRRVLFSTVHKFDGRSMRVLNA 837
Query: 331 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE-SAGLFPNFDLIYMY 389
E++QIAGRAGRYG +P G V +D +DL + L +P ++ + P+ + +
Sbjct: 838 TEIRQIAGRAGRYGL-YPKGYVGAMDKQDLNHIRTQLQTEAPSVDLRLPIAPSPEHVQAL 896
Query: 390 SRLHPDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVATVIDQLP--LRLHEKYLFCIS 446
+ L ++++ +L++F + A S + A ++ +++ +D+L L L EK+ F +
Sbjct: 897 AALLDNNNIGAVLQYFAQKVASDSPLFQTAGLKDAIELGFWVDRLAPKLELREKFTFACA 956
Query: 447 PVDMNDD 453
PV ++ D
Sbjct: 957 PVSVDKD 963
>gi|398022484|ref|XP_003864404.1| RNA helicase, putative [Leishmania donovani]
gi|322502639|emb|CBZ37722.1| RNA helicase, putative [Leishmania donovani]
Length = 687
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 161/480 (33%), Positives = 242/480 (50%), Gaps = 71/480 (14%)
Query: 62 LTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL 121
+ +P WYP AR R+ I H GPTNSGKTH AL L + SG+YC PL+ LA +V R+
Sbjct: 126 MHKPWDWYPHARLMRRRFIFHYGPTNSGKTHAALEALMRARSGVYCAPLKALASQVWHRV 185
Query: 122 NKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRA 181
K V CDL+ G ER A+H + TVEM V D V+DEIQM+ + RG+++TRA
Sbjct: 186 -KERVPCDLLIGDERVFGGAAEHVSCTVEMTPVDLPVDVGVVDEIQMMTDRDRGWAWTRA 244
Query: 182 LLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS-----N 236
LLG+ A E+HLCG+ A+PLIQ +L T + + + E LVPL V S
Sbjct: 245 LLGLPAREIHLCGEARALPLIQNLLYATHERKNLSTVEH-KRLVPLTVSPSLRSRLRPET 303
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEF---- 292
++ GDC V FS+ + L+ + S +YG++P + R +A RFN +E+
Sbjct: 304 VENGDCFVCFSKKQVLDLRDNLNRLSGVTSSAIYGAMPFQVREAEAARFNRGVTEYINAS 363
Query: 293 ------------------------------------DVLVASDAIGMGLNLNISRIIFST 316
VLV++DAI GLN+NI R++F+T
Sbjct: 364 ASCSANAKNNAAGCSTTSSPGTRPRESSPETATPTKHVLVSTDAIAYGLNMNIERMVFTT 423
Query: 317 MKKFDGVELRDLTVPEVKQIAGRAGRYG--SKFPVGEVTCLDSEDLPLLHKSL---LEPS 371
++KFDG + +L V+QIAGR+GR+G + VG T L D+ ++ LEP
Sbjct: 424 LRKFDGKAMAELPAATVQQIAGRSGRFGLTRQHAVGRCTVLHERDMAAFRAAMSAQLEP- 482
Query: 372 PMLESAGLFPNFDLIYMYSRLH--------------PDSSLYGILEHFLENAKLSENYFF 417
L AGL P D++ +++ L S + ++ F + S N+F
Sbjct: 483 --LAKAGLLPTADILQLFAELESAKSRKAGKPTVDLSGGSFFELMSTFAASCVESHNFFP 540
Query: 418 ANCEE-VLKVATVIDQL-PLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLR 475
+ +L+VA +++ + L L ++ +FC P+ S Q + +AT+++ V LR
Sbjct: 541 CDIHRSLLRVAELLEPVCNLSLTDRIVFCYLPLSDTSAASLQLIVAYATDHAAGKPVPLR 600
>gi|302875702|ref|YP_003844335.1| helicase domain-containing protein [Clostridium cellulovorans 743B]
gi|307689134|ref|ZP_07631580.1| helicase domain-containing protein [Clostridium cellulovorans 743B]
gi|302578559|gb|ADL52571.1| helicase domain protein [Clostridium cellulovorans 743B]
Length = 585
Score = 252 bits (643), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 135/324 (41%), Positives = 209/324 (64%), Gaps = 6/324 (1%)
Query: 63 TRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN 122
+ P Y AR+ RK LH+G TN+GKT+ A+++L+++SSG+Y PLR+LA E ++LN
Sbjct: 128 SNPKNEYKEARRIKRKFYLHLGDTNTGKTYNAMNKLKAASSGVYLSPLRILALENYEKLN 187
Query: 123 KANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRAL 182
K V C+L TG+E ++GAKH A T+E D+ ++YD A+IDEIQM+ RG ++T+AL
Sbjct: 188 KEGVLCNLETGEEEVIIEGAKHTACTIEKLDIKNEYDVAIIDEIQMINDDQRGAAWTKAL 247
Query: 183 LGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDC 242
LG+ A E+H+CG + ++++IL+ + ++ Y+R PLV +++++Q GD
Sbjct: 248 LGLKAIEIHICGALNSKEILKEILEDCDEVFEIIEYKRNLPLVVEEKSF-NYNDVQVGDA 306
Query: 243 IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 302
+V FS+ + +L + K + S++YG LPPE R +Q +F S+E ++L+ +DAIG
Sbjct: 307 LVVFSKKKVLKLAAYYKELDKKV-SVIYGDLPPEVRRKQYDQF--ISNEAEILITTDAIG 363
Query: 303 MGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPL 362
MG+NL I RIIF ++KFDG +LR LT EVKQIAGRAGR G + +G V E+
Sbjct: 364 MGVNLPIRRIIFMDVRKFDGNQLRYLTTQEVKQIAGRAGRLGI-YDIGYVASY-KENQNY 421
Query: 363 LHKSLLEPSPMLESAGLFPNFDLI 386
L + L +ESA L P+ +++
Sbjct: 422 LSEYLSVRDDEIESAVLGPSEEIL 445
>gi|156402846|ref|XP_001639801.1| predicted protein [Nematostella vectensis]
gi|156226931|gb|EDO47738.1| predicted protein [Nematostella vectensis]
Length = 354
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 128/288 (44%), Positives = 187/288 (64%), Gaps = 2/288 (0%)
Query: 184 GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLG-SFSNIQTGDC 242
G+ ++E+H+CG+ AV LI+++ + GD+ +V Y+RLS L L LG ++ GDC
Sbjct: 1 GVVSDEVHVCGEDTAVGLIKRLAKTCGDEFEVFHYDRLSQLQVLPYSLGGQLHQVRPGDC 60
Query: 243 IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 302
IV FS+ +++L++ IE C+IVYG LPP TR QA +FN+ E +L+ASDAIG
Sbjct: 61 IVAFSQRELFKLRQRIEKAKVTKCAIVYGGLPPATRVEQAAKFNNPDDEHKILIASDAIG 120
Query: 303 MGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPL 362
MGLNLNI RIIF M+KFDG + LT VKQIAGRAGRYGS++P GEVT L + LP
Sbjct: 121 MGLNLNIKRIIFHAMEKFDGQSVTQLTASHVKQIAGRAGRYGSEYPKGEVTTLYASSLPT 180
Query: 363 LHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLS-ENYFFANCE 421
L K + +PS ++ AGL P+ + I M S P+++L +++ FL+ A+L ENYF + E
Sbjct: 181 LKKLMSQPSDEVQRAGLSPSVEQIEMLSHQLPNATLGDLVDLFLDVAQLDGENYFMCDLE 240
Query: 422 EVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK 469
V +A +++ +PL + E+Y C +PV N +S+ + +FA S+K
Sbjct: 241 NVQYLAELVEGIPLTIWEQYSICQAPVSRNRTLSASVIVEFARRVSEK 288
>gi|365857845|ref|ZP_09397822.1| helicase protein [Acetobacteraceae bacterium AT-5844]
gi|363715418|gb|EHL98863.1| helicase protein [Acetobacteraceae bacterium AT-5844]
Length = 777
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 157/422 (37%), Positives = 242/422 (57%), Gaps = 16/422 (3%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+ AR R++ L GPTNSGK+H AL RL + SG+ PLRLLA E L V
Sbjct: 299 FATARALKRRITLVTGPTNSGKSHTALDRLSKAESGLALAPLRLLAHEFRDALAVRGVEA 358
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
L TG+ER + G++H A TVEM + + D A++DE Q+L + RG ++T A++G+ A
Sbjct: 359 SLATGEERIVMPGSRHLAATVEMCPLHNPVDVAIVDEAQLLHDRDRGAAWTAAIMGVPAR 418
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
E+ + G P A+P++++I + GDDV+ S ER PL P+ ++++ GD ++ FSR
Sbjct: 419 EVFVLGAPEAIPMVERIAALCGDDVEKVSLERKGPLRAATNPV-RLADLRPGDALIAFSR 477
Query: 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308
+ ++ + RG+ + +++YG+L PE R +A RF + E D++VA+DAIGMGLNL
Sbjct: 478 RDVLDMRAELVRRGRRV-AVIYGALSPEVRRAEAARFRN--GEADIVVATDAIGMGLNLP 534
Query: 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL 368
I R+IF+T+KKFDG RDL E+KQI GRAGRYG KF G V+ L P + +L
Sbjct: 535 IRRVIFTTLKKFDGEARRDLNAQEIKQIGGRAGRYG-KFEEGVVSVLAGAGSPDFVRHML 593
Query: 369 E--PSPMLESAGLF-PNFDLIYMYSRLHPDSSLYGILEHFLENA-KLSE-NYFFANCEEV 423
P P E L P+ D+I + SL+G+L +L + NY A+ +
Sbjct: 594 NAPPQPPEELRPLVQPDADIIANVAAEIGSDSLFGVLARIRRAVLRLDDPNYRLADLTQA 653
Query: 424 LKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGLG 483
+A+ ID + L L +++ + + PVD D+ ++ L ++A +++ R + P G
Sbjct: 654 QSIASAIDGVGLSLMDRWTYAMCPVDERDNGITR-LARWAVDHAAG-----RAVIPPSAG 707
Query: 484 SL 485
L
Sbjct: 708 RL 709
>gi|288957948|ref|YP_003448289.1| hypothetical protein AZL_011070 [Azospirillum sp. B510]
gi|288910256|dbj|BAI71745.1| hypothetical protein AZL_011070 [Azospirillum sp. B510]
Length = 733
Score = 251 bits (640), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 151/402 (37%), Positives = 230/402 (57%), Gaps = 13/402 (3%)
Query: 55 KKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLA 114
+ FDF+ R +P+AR R+++L +GPTNSGKTH+A++ L + G+Y PLRLLA
Sbjct: 233 RHFDFSRFER---LFPVARGMNRRLVLVIGPTNSGKTHRAITALREARDGVYLAPLRLLA 289
Query: 115 WEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
EV +RLN LITG+E GA+H A T+E+ D + AVIDEIQML R
Sbjct: 290 LEVMERLNAEGTPTTLITGEEEIRTPGARHTASTIEVMDPDRPVEVAVIDEIQMLADPAR 349
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++T AL+G+ A +++ G P PL+++ G+ ++V R +PL L+ L +
Sbjct: 350 GWAWTAALMGVPAETVYILGAPEVRPLVERAAAHLGEPLEVVELARKTPLSMLDRRL-EW 408
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
+ ++ GD ++ FSR ++ ++ + ++G + +I YG+L P R R+A RF S E DV
Sbjct: 409 AEVERGDALIAFSRREVHSVRDTLLAQGLSVAAI-YGALAPAVRRREAARF--LSGEADV 465
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 354
+VA+DAIGMGLNL R++F+ ++KFDG +R LT EVKQIAGRAGR+G +F G
Sbjct: 466 VVATDAIGMGLNLPCRRVLFTALEKFDGSAVRPLTATEVKQIAGRAGRFG-QFEEGHFGV 524
Query: 355 LDSEDLPLLHKSLLE-PSPMLESAGLFPNFDLIYMYSRL--HPDSSLYGILEHFLENAKL 411
+ + P K LLE P L + P M +RL H DS +L +A
Sbjct: 525 I-ARGAPAALKRLLEAPDRSLRADAPLPVRPTRAMLARLASHIDSDETRLLVECFGSADT 583
Query: 412 SENYF-FANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMND 452
+ + F A+ + + A ++D L L K ++P D+ +
Sbjct: 584 AGSPFRLADLSALRRAAPMLDARRLALSAKLELLLAPADLEE 625
>gi|146099298|ref|XP_001468607.1| putative RNA helicase [Leishmania infantum JPCM5]
gi|134072975|emb|CAM71694.1| putative RNA helicase [Leishmania infantum JPCM5]
Length = 687
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 161/480 (33%), Positives = 242/480 (50%), Gaps = 71/480 (14%)
Query: 62 LTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL 121
+ +P WYP AR R+ I H GPTNSGKTH AL L + SG+YC PL+ LA +V R+
Sbjct: 126 MHKPWDWYPHARLMRRRFIFHYGPTNSGKTHAALEALMRARSGVYCAPLKALASQVWHRV 185
Query: 122 NKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRA 181
K V CDL+ G ER A+H + TVEM V D V+DEIQM+ + RG+++TRA
Sbjct: 186 -KERVPCDLLIGDERVFGGAAEHVSCTVEMTPVDLPVDVGVVDEIQMMTDRDRGWAWTRA 244
Query: 182 LLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS-----N 236
LLG+ A E+HLCG+ A+PLIQ +L T + + + E LVPL V S
Sbjct: 245 LLGLPAREIHLCGEARALPLIQNLLYATHERKNLSTVEH-KRLVPLTVSPSLRSRLRPET 303
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEF---- 292
++ GDC V FS+ + L+ + S +YG++P + R +A RFN +E+
Sbjct: 304 VENGDCFVCFSKKQVLDLRDNLNRLSGVTSSAIYGAMPFQVREAEAARFNRGVTEYINAS 363
Query: 293 ------------------------------------DVLVASDAIGMGLNLNISRIIFST 316
VLV++DAI GLN+NI R++F+T
Sbjct: 364 ASCSANAKNNAAGCSTTSSPGTRPRESSPETATPTKHVLVSTDAIAYGLNMNIERMVFTT 423
Query: 317 MKKFDGVELRDLTVPEVKQIAGRAGRYG--SKFPVGEVTCLDSEDLPLLHKSL---LEPS 371
++KFDG + +L V+QIAGR+GR+G + VG T L D+ ++ LEP
Sbjct: 424 LRKFDGKAMAELPAATVQQIAGRSGRFGLTRQHAVGRCTVLHECDMAAFRAAMSAQLEP- 482
Query: 372 PMLESAGLFPNFDLIYMYSRLH--------------PDSSLYGILEHFLENAKLSENYFF 417
L AGL P D++ +++ L S + ++ F + S N+F
Sbjct: 483 --LAKAGLLPTGDILQLFAELESAKSRKAGKPTLDLSGGSFFELMSTFAASCVESHNFFP 540
Query: 418 ANCEE-VLKVATVIDQL-PLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLR 475
+ +L+VA +++ + L L ++ +FC P+ S Q + +AT+++ V LR
Sbjct: 541 CDIHRSLLRVAELLEPVCNLSLTDRIVFCYLPLSDTSAASLQLIVAYATDHAAGKPVPLR 600
>gi|350270438|ref|YP_004881746.1| putative helicase [Oscillibacter valericigenes Sjm18-20]
gi|348595280|dbj|BAK99240.1| putative helicase [Oscillibacter valericigenes Sjm18-20]
Length = 600
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 146/332 (43%), Positives = 200/332 (60%), Gaps = 8/332 (2%)
Query: 53 GMKKFDFTDLTR--PHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPL 110
GM + +F L P YP AR++ R LH+G TN+GKT+QAL RL S SGIY PL
Sbjct: 117 GMVREEFRRLLPRFPQDEYPEARRQKRMFYLHLGDTNTGKTYQALLRLRQSRSGIYLAPL 176
Query: 111 RLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLG 170
R+LA E +RLN V C L+TG+E V G+KH TVE AD+ YD AVIDE+Q+L
Sbjct: 177 RILALENYERLNAEGVPCSLLTGEEEARVPGSKHLCCTVEKADLGGKYDVAVIDEVQLLA 236
Query: 171 CKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVP 230
RG ++TRA+LG+ E+HLCG + +++ GD+ + ++Y RL PL P
Sbjct: 237 DSQRGDAWTRAILGLPCPEIHLCGALLVKEQLTTMIRDCGDEYEFKAYTRLVPLQMEYTP 296
Query: 231 LGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASS 290
+ +++ GD +V FS+ A+ L + + G S++YG LPPE R Q F +
Sbjct: 297 V-HLNHVGKGDALVAFSKGAVLALSRYLSQLGIR-SSVIYGDLPPEVRRGQYDAFIRGKN 354
Query: 291 EFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
VLVA+DAIGMG+NL I R+IF+ ++KFDG R LT E+KQIAGRAGR G + VG
Sbjct: 355 --PVLVATDAIGMGVNLPIRRLIFTELEKFDGESRRPLTSQEIKQIAGRAGRIGI-YEVG 411
Query: 351 EVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN 382
V CLD E +PL+ + L +E A + P+
Sbjct: 412 YVACLD-ERIPLVEEKLSAEDEPIEQAVVGPS 442
>gi|357030820|ref|ZP_09092764.1| putative RNA helicase [Gluconobacter morbifer G707]
gi|356415514|gb|EHH69157.1| putative RNA helicase [Gluconobacter morbifer G707]
Length = 812
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 166/421 (39%), Positives = 241/421 (57%), Gaps = 20/421 (4%)
Query: 72 ARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLI 131
AR R++ L GPTNSGK+H AL+ L ++ SG+ PLRLLA E + L V L
Sbjct: 300 ARALKRRITLVTGPTNSGKSHTALNALANAESGLALAPLRLLAHEFRESLLTRGVPASLS 359
Query: 132 TGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH 191
TG+ER E+ GA+H A TVEM + D A+IDE QML RG ++T A++G+ A +
Sbjct: 360 TGEERIEMPGARHLAATVEMCPFHNPVDVAIIDEAQMLADPDRGAAWTAAIMGVPARHVF 419
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
+ G P +PL++QI ++ D V ER SPL V S +Q D ++ FSR +
Sbjct: 420 VLGAPDCIPLVRQIAELCDDPVDEIHLERKSPLKADGV--LHLSELQPSDAVIAFSRREV 477
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
L+ + +RG+ + ++VYG+L PE R +A RFN + E D+LVA+DAIGMGLNL+I R
Sbjct: 478 LDLRAELMARGRRV-AVVYGALSPEVRRAEAARFN--AGEADILVATDAIGMGLNLSIRR 534
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE-- 369
I+FS+++KFDG + RDLT EVKQI GRAGRYG K G V L P + +L
Sbjct: 535 IVFSSLRKFDGRQTRDLTSQEVKQIGGRAGRYG-KHEQGLVCVLAEGGSPAFVRRMLSAP 593
Query: 370 PSPMLESAGLF-PNFDLIYMYSRLHPDSSLYGILEHFLENAKL---SENYFFANCEEVLK 425
P P+ E L P+ D++ + SLYG+L ++ A L NY A+ E+ L+
Sbjct: 594 PEPVTELRPLVQPDSDIVRAVAEEIGSDSLYGVLTR-IKRAVLRPDDPNYRLADMEQALE 652
Query: 426 VATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGLGS 484
+A ++ + L L ++ + + P+D D+ Q L Q+A +++ R + PG G
Sbjct: 653 IAAALEGVEDLDLSTRWTYAMCPIDERDN-GIQRLVQWAADHAAG-----RRVPPPGTGR 706
Query: 485 L 485
L
Sbjct: 707 L 707
>gi|254559493|ref|YP_003066588.1| hypothetical protein METDI0942 [Methylobacterium extorquens DM4]
gi|254266771|emb|CAX22570.1| conserved hypothetical protein; putative ATP-dependent helicase
domain [Methylobacterium extorquens DM4]
Length = 714
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 150/402 (37%), Positives = 242/402 (60%), Gaps = 14/402 (3%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+ AR+ R+++ H+GPTNSGKT+ AL L ++ +G Y PLRLLA E + L++ +
Sbjct: 236 FAAARRLNRRILFHMGPTNSGKTYAALLALSAAPTGAYLAPLRLLALENYEALSERGLRA 295
Query: 129 DLITGQE-REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA 187
++TG+E E+D H A T+E AD+ D AVIDEIQML RG+++T AL G+ A
Sbjct: 296 GMVTGEEVLGELD-PTHTARTIETADLTRPIDVAVIDEIQMLSDPDRGWAWTNALFGVPA 354
Query: 188 NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFS 247
+ +CG A+ +++ + + ++V ++ER SPLV L+ P+ ++ GD +V FS
Sbjct: 355 RTVIVCGSDDALSYVRRAAEAANESLEVINFERKSPLVLLDEPV-PLEKVEPGDAVVAFS 413
Query: 248 RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307
R A++ ++ + +RG H + +YG+L PE R +A RF S E +VLV +DAIGMGLNL
Sbjct: 414 RRAVHENREILVARG-HRVATIYGALSPEVRRAEAARFR--SGEANVLVTTDAIGMGLNL 470
Query: 308 N-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKS 366
+ RI+FST++K+DGV+ R LT E++QIAGRAGRYG + VG V + + + ++
Sbjct: 471 GPLKRIVFSTVRKWDGVQERVLTNSEIRQIAGRAGRYGHQ-DVGYVAATEPTAVEPI-RT 528
Query: 367 LLEPSPMLESAG----LFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANC-E 421
L +P +A + P+ I + SLY ++ HF + + F + E
Sbjct: 529 ALAGAPTAPAADTRFYVRPDLTAIRSVAEEMRTPSLYEVMTHFARATFYAGSPFQPSALE 588
Query: 422 EVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFA 463
EVL++A +ID+ L + EK++F + P++ D+I+ L +++
Sbjct: 589 EVLEIARIIDRARLPIEEKFIFSVCPINRRDEIAMGMLERWS 630
>gi|255524643|ref|ZP_05391596.1| helicase domain protein [Clostridium carboxidivorans P7]
gi|255511667|gb|EET87954.1| helicase domain protein [Clostridium carboxidivorans P7]
Length = 585
Score = 248 bits (634), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 139/317 (43%), Positives = 193/317 (60%), Gaps = 9/317 (2%)
Query: 30 NSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSG 89
N E +G+ + V+I + K+FD P Y ARK +RK LH+G TN+G
Sbjct: 96 NYESYLGS-GIISVLITKHIPKLVSKEFDNVFPANPKDEYEHARKLIRKFYLHLGETNTG 154
Query: 90 KTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTV 149
KT+ A+ RL+ + +G+Y PLR+LA E +RLN V C L+TG+E V+GA+H + T+
Sbjct: 155 KTYNAMQRLKQAKNGVYLSPLRILALENYERLNSEGVKCSLMTGEEEIIVEGAQHISCTI 214
Query: 150 EMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT 209
E DV +YD A+IDEIQM+ RG ++TRALLG+ E+H+CG + L+ I++
Sbjct: 215 EKLDVNEEYDIAIIDEIQMINDDQRGAAWTRALLGLNCKEIHICGAINSKELLIDIIEDC 274
Query: 210 GDDVKVQSYERLSPLVPLNVPLGSFS--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCS 267
D + + Y+R PLV + GSFS +IQ GD +V FS+ + L S G S
Sbjct: 275 QDQYEFKEYKRSIPLV---MEYGSFSRKSIQDGDALVVFSKKRVLELAYYYGSLGIK-AS 330
Query: 268 IVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRD 327
++YG LPPE R +Q +F + E +LV +DAIGMG+NL I RIIF +KKFDG ++R
Sbjct: 331 LIYGDLPPEVRRKQYEQF--INKETKILVTTDAIGMGVNLPIRRIIFMNVKKFDGSQVRF 388
Query: 328 LTVPEVKQIAGRAGRYG 344
L EVKQIAGRAGR G
Sbjct: 389 LNSQEVKQIAGRAGRKG 405
>gi|389700116|ref|ZP_10185167.1| superfamily II RNA helicase, partial [Leptothrix ochracea L12]
gi|388591261|gb|EIM31519.1| superfamily II RNA helicase, partial [Leptothrix ochracea L12]
Length = 572
Score = 248 bits (633), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 158/415 (38%), Positives = 230/415 (55%), Gaps = 19/415 (4%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+ AR RKV L +GP NSGKT+QA RL + SG Y PLRLLA E RL + V C
Sbjct: 85 FERARHLERKVTLLIGPPNSGKTYQAFERLAKAESGAYLAPLRLLALEGRDRLQERGVLC 144
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
L TG+E V+GA+ + T+EM D AVIDE QM+ +RG+++T+A++ + A
Sbjct: 145 SLRTGEENVPVEGARITSSTIEMVGTREIIDVAVIDEAQMIFDPSRGWAWTQAIVAVPAR 204
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSP--LVPLNVPLGSFSNIQTGDCIVTF 246
EL + AV ++ +L + G+ +Q +ER L+P VPL + + GD +V F
Sbjct: 205 ELFIIASEYAVETLEGLLGLCGESCTIQRFERKQAVQLLPAPVPLNA---LHKGDAVVAF 261
Query: 247 SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 306
SR + L+ I + G H +++YG+LPPE R R+A RF A VLVA+DAIGMGLN
Sbjct: 262 SRRDVLMLRDQISAHG-HSVAVIYGALPPEVRRREAERF--AQGAVSVLVATDAIGMGLN 318
Query: 307 LNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKS 366
L I R++FSTM KFDG R LT EV QIAGRAGR+G T + E P K+
Sbjct: 319 LPIRRVLFSTMTKFDGQGDRLLTDSEVHQIAGRAGRFG--LHEEGFTGVLKEAEPSAAKT 376
Query: 367 LLE------PSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYF-FAN 419
L + +P A + PN I S + L+ +L+ F++ +L +F A
Sbjct: 377 LRQLLPQTPRAPRQFKAPVAPNGWHIDTISARLGKTGLHEVLKVFMDQLQLDSAHFAVAE 436
Query: 420 CEEVLKVATVIDQ--LPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIV 472
E++L +A +DQ L L +++ + +PVD + Q +A ++++ G+V
Sbjct: 437 LEQMLTLAEQLDQNAASLNLRQRFTYAQAPVDTRTEAQVQAFLSWARSHAETGMV 491
>gi|404370561|ref|ZP_10975883.1| hypothetical protein CSBG_02133 [Clostridium sp. 7_2_43FAA]
gi|226913306|gb|EEH98507.1| hypothetical protein CSBG_02133 [Clostridium sp. 7_2_43FAA]
Length = 585
Score = 248 bits (632), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 142/366 (38%), Positives = 217/366 (59%), Gaps = 18/366 (4%)
Query: 18 RILRDNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVR 77
+++R N F I F SV + R + K+F+ P Y LAR R
Sbjct: 91 QVIRGNYNSF------INSGFMSV--LTRQHIPKLISKEFEENFPDNPKDEYRLARNINR 142
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE 137
K+ +H+G TN+GKT+ A+ RL+ + +G+Y PLR+LA E ++LN + V C+L+TG+E
Sbjct: 143 KIYIHLGETNTGKTYTAMERLKVAKNGVYLSPLRILALENYEKLNNSGVICNLLTGEEEI 202
Query: 138 EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 197
+GA H + T+E AD+ +YD A+IDEIQM+ RG ++TRALLG+ NE+H+CG
Sbjct: 203 LKEGATHTSCTIEKADLKKEYDIAIIDEIQMIDDSQRGAAWTRALLGLRCNEIHICGALN 262
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLK 255
A ++++I++ DD + + Y+R +PL V +F + + GD IV FS+ + ++
Sbjct: 263 AKRVVEKIIEDCNDDYEFKEYKR---SIPLEVQESNFNYNYAEEGDAIVVFSKKKVLQIA 319
Query: 256 KAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFS 315
+ G SI+YG LPPE R +Q F + E VL+ +DAIGMG+NL I RI+F
Sbjct: 320 EQYSDMGIK-ASIIYGDLPPEVRRKQYDMF--INKENKVLITTDAIGMGVNLPIKRIVFL 376
Query: 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 375
++KFDG E+R LT EVKQ+AGRAGR G + VG V + ++ + + L E +++
Sbjct: 377 DIQKFDGEEIRYLTSQEVKQVAGRAGRKGI-YEVGYVATV-RDNQKFIKEKLEEKDKIIK 434
Query: 376 SAGLFP 381
+A L P
Sbjct: 435 AAVLGP 440
>gi|156101109|ref|XP_001616248.1| ATP-dependent DEAD box helicase [Plasmodium vivax Sal-1]
gi|148805122|gb|EDL46521.1| ATP-dependent DEAD box helicase, putative [Plasmodium vivax]
Length = 862
Score = 248 bits (632), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 137/318 (43%), Positives = 196/318 (61%), Gaps = 28/318 (8%)
Query: 76 VRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQE 135
RK+ L+VGPTNSGKT++A RL S +G+YC PLR+LAWE+ K+L K N +L+TGQE
Sbjct: 165 TRKLHLYVGPTNSGKTYEAFQRLCKSRNGLYCAPLRILAWEIHKKLIKLNKVTNLLTGQE 224
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGD 195
+ A H TVEM + YDCAVIDEIQM+ +TRG ++T LL + E++LCG
Sbjct: 225 IIKKKNATHTVCTVEMTPLERQYDCAVIDEIQMINHETRGCAWTNVLLNLECEEIYLCGS 284
Query: 196 PAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLK 255
+ L++++ + D + ++ +ERL+ L + + ++TGDC++TFSR++I LK
Sbjct: 285 DQIINLVKRLADLLHDQLIIKQFERLTKL-RVQESTVEWEELKTGDCVITFSRNSIMLLK 343
Query: 256 KAIESRGKHLCSIVYGSLPPETRTRQATRFN---------DASSEFD------------- 293
K +E K + +VYGSLPPE + RQ FN + E D
Sbjct: 344 KRLERFNKRV-FVVYGSLPPELKRRQVELFNRCCTGEGGIEKVDETDTAELPPSSDNKKE 402
Query: 294 -VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY--GSKFPV- 349
+L+A+D IGMG+N+NI RIIF +++KFDG +LR L EV QIAGRAGRY G + P+
Sbjct: 403 TILIATDVIGMGVNINIRRIIFYSLQKFDGDKLRHLYASEVLQIAGRAGRYHHGVREPIT 462
Query: 350 GEVTCLDSEDLPLLHKSL 367
G VTC+ + DL + + L
Sbjct: 463 GYVTCVHAHDLGTIRRIL 480
Score = 42.0 bits (97), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 46/83 (55%), Gaps = 7/83 (8%)
Query: 377 AGLFPNFDLIYMYSRL-----HPDSSLYGILEHFLENAKLSENYFF--ANCEEVLKVATV 429
AG FP+F++I ++ L+ I+ ++ AKL+E+YFF N +++ +A
Sbjct: 563 AGFFPDFNMINKLKKMLEYEHKAKVELHEIMSILVDYAKLNEDYFFLTKNYNQMIIIAKF 622
Query: 430 IDQLPLRLHEKYLFCISPVDMND 452
+ + L +++ +SP+++ND
Sbjct: 623 LKDIKLDGETLFVYSLSPINVND 645
>gi|171059674|ref|YP_001792023.1| helicase domain-containing protein [Leptothrix cholodnii SP-6]
gi|170777119|gb|ACB35258.1| helicase domain protein [Leptothrix cholodnii SP-6]
Length = 757
Score = 248 bits (632), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 158/415 (38%), Positives = 229/415 (55%), Gaps = 29/415 (6%)
Query: 72 ARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLI 131
AR R V L+VGP NSGKT+ A RL + G Y PLRLLA E RL V C L+
Sbjct: 279 ARNLQRNVTLYVGPPNSGKTYAAFERLAQAIDGAYLAPLRLLALEGRDRLVGRGVPCSLL 338
Query: 132 TGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH 191
TG+E +GA+ + T+EM + D AVIDE QM+ +RG+++T+A++ + A E+
Sbjct: 339 TGEENVPAEGARVVSSTIEMVSTNTPIDVAVIDEAQMIFDNSRGWAWTQAIVAVPAREVI 398
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLS--PLVPLNVPLGSFSNIQTGDCIVTFSRH 249
+ AVP I+ +L + G+ V+ +ER L+P V S S ++ GD +V FSR
Sbjct: 399 IICSAYAVPAIENLLGLCGERCTVREFERKQHVELLPHAV---SLSGLKLGDAVVAFSRR 455
Query: 250 AIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNI 309
+ L+ I + G H S++YG+LPPE R R+A RF A E VLVA+DAIGMGLNL I
Sbjct: 456 EVLSLRDKIAASG-HPVSVIYGALPPEVRRREAERF--AHGESHVLVATDAIGMGLNLPI 512
Query: 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG-----------SKFPVGEVTCLDSE 358
R++FST+ KFDG R L+ EV QIAGRAGRYG P E + D
Sbjct: 513 RRVLFSTLTKFDGQADRSLSESEVHQIAGRAGRYGMHEEGFTGVLKEAEPSAERSLKD-- 570
Query: 359 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYF-F 417
LLH++ P A + PN + SR + L +L+ F++ KL + +F
Sbjct: 571 ---LLHRAPRAPRDF--KAPVAPNGWHVDTISRRLNKTRLREVLDVFMDQLKLDDAHFAV 625
Query: 418 ANCEEVLKVATVID--QLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKG 470
A E++L +A +D L L E++ + +PVD + Q ++++N+++ G
Sbjct: 626 AELEQMLDLAEKLDISAAGLTLKERFTYAQAPVDTRTESQVQEYLEWSSNHARTG 680
>gi|392377821|ref|YP_004984980.1| conserved protein of unknown function [Azospirillum brasilense
Sp245]
gi|356879302|emb|CCD00212.1| conserved protein of unknown function [Azospirillum brasilense
Sp245]
Length = 743
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 158/442 (35%), Positives = 245/442 (55%), Gaps = 30/442 (6%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DL R +P+AR R+++L +GPTNSGKTH A+ L+ + GIY PLRLLA EV +R
Sbjct: 242 DLARFEKLFPVARGLGRRLVLVIGPTNSGKTHHAIEALKGAWDGIYLAPLRLLALEVMER 301
Query: 121 LNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTR 180
LN + L+TG+E GA+H A T+E+ D + AVIDEIQML RG+++T
Sbjct: 302 LNAESTPASLLTGEEAIATPGARHTASTIEVMDPDRPVEVAVIDEIQMLADPDRGWAWTA 361
Query: 181 ALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTG 240
AL+G A +++ G P A PL++++ G+ ++V ER PL ++ L ++ ++ G
Sbjct: 362 ALMGAPAETVYILGAPEARPLVERVAAHLGERLEVIELERKVPLTLIDRRL-NWEEVEPG 420
Query: 241 DCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 300
D ++ FSR I+ ++ + ++G + + VYG+L PE R R+A RF S E DV+VA+DA
Sbjct: 421 DALIAFSRREIHTVRDTLRAKGLSVAA-VYGALAPEVRRREAARF--LSGEADVVVATDA 477
Query: 301 IGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL 360
IGMGLNL R++F+ ++KFDG +R L+ EVKQIAGRAGR+G KF GE +
Sbjct: 478 IGMGLNLPCRRVLFTALEKFDGTSVRPLSATEVKQIAGRAGRFG-KFESGEFGVV-GRGT 535
Query: 361 PLLHKSLLEPSP-MLESAGLFPNFDLIYMYSRL--HPDSSLYGILEHFLENAKLSEN-YF 416
P ++LLE + L + M +RL H + +L + +A+ + + Y
Sbjct: 536 PQALRTLLEKADGRLRADAPLTVRPTRAMLARLAEHIGTEETVLLLDCVADARTAGSPYR 595
Query: 417 FANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLRE 476
+ + ++A ++D+ L L K + P D+ D+ ++
Sbjct: 596 VGDLSGMRRLALMLDERRLTLPAKLDLLLIPADLEDEAEAR------------------- 636
Query: 477 IFTPGLGSLRVAE-FPVGRIVP 497
I LG++ E P+GR VP
Sbjct: 637 ILAAILGAVEAGEPSPLGRFVP 658
>gi|293376698|ref|ZP_06622921.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
gi|325845178|ref|ZP_08168486.1| helicase C-terminal domain protein [Turicibacter sp. HGF1]
gi|292644655|gb|EFF62742.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
gi|325488774|gb|EGC91175.1| helicase C-terminal domain protein [Turicibacter sp. HGF1]
Length = 586
Score = 247 bits (631), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 136/354 (38%), Positives = 212/354 (59%), Gaps = 17/354 (4%)
Query: 65 PHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKA 124
P Y R+ RK LH+G TN+GKT+ A+ L+ S GIY PLRLLA E + LN++
Sbjct: 131 PKDEYKKTRQMKRKFYLHLGETNTGKTYHAIEALKKSKRGIYLAPLRLLALENYENLNQS 190
Query: 125 NVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLG 184
+ C L+TG+E V A H + T+E D+ YD AVIDE+Q++G RG S+T+A+LG
Sbjct: 191 QIPCHLLTGEEEIIVTNANHISCTIEKLDLNQLYDVAVIDEVQLIGDVIRGASWTKAILG 250
Query: 185 ICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIV 244
+ + ++H+CG L+ Q+++ G++ +++ Y R +PL P +N GD ++
Sbjct: 251 LMSQDIHICGALNTKKLLIQLIEDCGEEYEIKEYYRNTPLKLEQTPY-QMNNPSAGDALI 309
Query: 245 TFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMG 304
FS+ + L + + RG + S++YG LPPE R Q + F+ SE +L+ +DAIGMG
Sbjct: 310 AFSKKKVLELSRYYQDRG-YKVSVIYGDLPPEVRRLQYSMFSSGESE--LLITTDAIGMG 366
Query: 305 LNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD------SE 358
+NL I RI+F+++KKFDG ++R+LT EVKQIAGRAGR G + VG VT +D E
Sbjct: 367 VNLPIKRIVFTSLKKFDGEDIRELTSQEVKQIAGRAGRKGI-YEVGYVTSIDEYLGRLQE 425
Query: 359 DLP----LLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILE--HFL 406
L L+ K+++ P+ +L P + + ++S + + S Y ++ H+L
Sbjct: 426 KLECEDRLIEKAIIGPTELLLQIKGIPLIEKLAIWSMYYDEFSYYQKMDVSHYL 479
>gi|157876001|ref|XP_001686365.1| putative RNA helicase [Leishmania major strain Friedlin]
gi|68129439|emb|CAJ07982.1| putative RNA helicase [Leishmania major strain Friedlin]
Length = 655
Score = 247 bits (631), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 158/478 (33%), Positives = 242/478 (50%), Gaps = 67/478 (14%)
Query: 62 LTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL 121
+ +P WYP AR R+ I H GPTNSGKTH AL L + SG+YC PL+ LA +V R+
Sbjct: 93 MHKPWDWYPQARLMRRRFIFHYGPTNSGKTHAALEALVRARSGVYCAPLKALAAQVWHRV 152
Query: 122 NKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRA 181
K V CDL+ G ER A+H + TVEM V D V+DEIQM+ + RG+++TRA
Sbjct: 153 -KERVPCDLLIGDERVFGGAAEHVSCTVEMTPVDLPVDVGVVDEIQMIADRDRGWAWTRA 211
Query: 182 LLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS-----N 236
LLG+ A E+HLCG+ A+PLIQ +L T + + + E LVPL V S
Sbjct: 212 LLGLPAREIHLCGEARALPLIQNLLYATHERKNLSTVEH-KRLVPLAVSPSLRSRLRPET 270
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEF---- 292
++ GDC V FS+ + L+ + +YG++P + R +A RFN +++
Sbjct: 271 VENGDCFVCFSKKQVLSLRDNLNRLPGVKSFAIYGAMPFQVREAEAARFNRGVTDYINAS 330
Query: 293 ------------------------------------DVLVASDAIGMGLNLNISRIIFST 316
VLV++DAI GLN+NI R++F+T
Sbjct: 331 TSCSANAKNNTAGCSTTSPPGTRPRESSPETATPTKHVLVSTDAIAYGLNMNIERMVFTT 390
Query: 317 MKKFDGVELRDLTVPEVKQIAGRAGRYG--SKFPVGEVTCLDSEDLPLLHKSL-LEPSPM 373
++KFDG + +L V+QIAGR+GR+G + VG T L D+ ++ +P P
Sbjct: 391 LRKFDGKGMVELPAATVQQIAGRSGRFGLTRQHAVGRCTVLHESDMAAFGAAMSAQPEP- 449
Query: 374 LESAGLFPNFDLIYMYSRLH--------------PDSSLYGILEHFLENAKLSENYFFAN 419
L AGL P D++ +++ L S + ++ F + S+N+F +
Sbjct: 450 LAKAGLLPTGDILQLFAELESAKSRKASTPTLDLSGGSFFELMSRFAASCAESQNFFPCD 509
Query: 420 CEE-VLKVATVIDQL-PLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLR 475
+L+VA +++ + L L ++ +FC P+ S Q + +AT+++ V LR
Sbjct: 510 IHRSLLRVAELLEPVRNLSLTDRIMFCYLPLSDMSAASLQLIVAYATDHAAGKPVPLR 567
>gi|28211047|ref|NP_781991.1| mitochondrial ATP-dependent RNA helicase suv3 precursor
[Clostridium tetani E88]
gi|28203486|gb|AAO35928.1| mitochondrial ATP-dependent RNA helicase suv3 precursor
[Clostridium tetani E88]
Length = 593
Score = 246 bits (629), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 133/314 (42%), Positives = 191/314 (60%), Gaps = 9/314 (2%)
Query: 43 VIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSS 102
V+I S+ KKFD P Y ARK RK +H+G TN+GKT+ A+ +L+ S
Sbjct: 116 VLITSHIPKMIYKKFDTVFPKNPKDEYEEARKLTRKFYIHLGETNTGKTYNAMQKLKESK 175
Query: 103 SGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAV 162
GIY PLR+LA E +RLN + C+L+TG+E +V+ A H + T+E D+ YD A+
Sbjct: 176 HGIYLSPLRILALENFERLNNEGIKCNLLTGEEEIKVENATHTSCTIEKLDINKVYDVAI 235
Query: 163 IDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLS 222
IDEIQM+ RG ++TRA LG+ E+H+CG + +I +I++ D+ + + Y+R
Sbjct: 236 IDEIQMIDDDERGAAWTRAFLGLNCEEIHICGAINSKDIITEIVEDCQDEYEFKEYKR-- 293
Query: 223 PLVPLNVPLGSFS--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 280
+PL + SFS +I+ GD +V FS+ + +L K G S++YG LPPE R +
Sbjct: 294 -DIPLEMEFESFSYRDIKEGDALVVFSKKRVLQLAKNYADMGIK-SSLIYGDLPPEVRKK 351
Query: 281 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 340
Q +F + E +L+ +DAIGMG+NL I RIIF +KKFDG E+R L EVKQIAGRA
Sbjct: 352 QYKQF--INKESSILITTDAIGMGVNLPIRRIIFMDVKKFDGSEIRYLNSQEVKQIAGRA 409
Query: 341 GRYGSKFPVGEVTC 354
GR G + +G V+
Sbjct: 410 GRKGI-YEIGYVSS 422
>gi|293375148|ref|ZP_06621436.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
gi|325838835|ref|ZP_08166682.1| helicase C-terminal domain protein [Turicibacter sp. HGF1]
gi|292646254|gb|EFF64276.1| conserved hypothetical protein [Turicibacter sanguinis PC909]
gi|325490698|gb|EGC93007.1| helicase C-terminal domain protein [Turicibacter sp. HGF1]
Length = 588
Score = 246 bits (628), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 144/346 (41%), Positives = 207/346 (59%), Gaps = 18/346 (5%)
Query: 65 PHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKA 124
P Y AR RK+ LH+G TN+GKTH+A+ RL+ S G+Y PLR+LA E+ +RLNK
Sbjct: 131 PKDEYQEARNLKRKIYLHLGQTNTGKTHRAIERLKQSQKGVYLAPLRILALEIYERLNKE 190
Query: 125 NVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLG 184
V C L+TG+E + A H++ TVE ++ YD AVIDEIQM+G RG S+TRALLG
Sbjct: 191 GVPCTLLTGEEEVIIPEANHQSSTVEKVNLDQTYDVAVIDEIQMIGDYQRGSSWTRALLG 250
Query: 185 ICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIV 244
+ +E+H+CG A ++ ++++ GD+ +V YERL PLV P + + Q GD +
Sbjct: 251 LRCSEIHVCGALNAKEILLEMIKDCGDEFEVIEYERLVPLVIEKEPF-NHQDTQEGDAFI 309
Query: 245 TFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMG 304
FS+ + +L K + G + S++YG LPPE R Q F + +LV++DAIGMG
Sbjct: 310 LFSKRKVLQLAKQYKEMGIN-ASVIYGDLPPEVRKMQYYDF--VHKKNLILVSTDAIGMG 366
Query: 305 LNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC---------- 354
+NL I RI+F + KFDG E R LT EVKQIAGRAGR G + VG V
Sbjct: 367 VNLPIRRIVFMNLCKFDGEEERFLTSQEVKQIAGRAGRIGI-YEVGYVAGYGRSYSFLKE 425
Query: 355 -LDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLY 399
++ ED P + ++++ PS +L P + + ++S + P +LY
Sbjct: 426 KIEMEDDP-IEQAVIGPSEVLLQIEGLPLKEKLALWSTM-PVETLY 469
>gi|224826875|ref|ZP_03699974.1| helicase domain protein [Pseudogulbenkiania ferrooxidans 2002]
gi|224600862|gb|EEG07046.1| helicase domain protein [Pseudogulbenkiania ferrooxidans 2002]
Length = 658
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 150/399 (37%), Positives = 222/399 (55%), Gaps = 9/399 (2%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+ LA+ R I +GPTNSGKTH A+ L + +G Y PLRLLA E +RL A V+
Sbjct: 164 FTLAQSMRRHFIAVLGPTNSGKTHAAMEHLAQAGTGAYLAPLRLLALENYQRLLDAGVAV 223
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
LITG++R+ A H A TVEM + D AVIDEIQ+L RG ++T A+ G+ A+
Sbjct: 224 SLITGEQRKLHPDATHVASTVEMLNPNRPLDVAVIDEIQLLDDPDRGAAWTAAVCGVPAS 283
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
++L G A P I+ +++ G ++V+ +R SPLV PLGS N+Q GD ++ FSR
Sbjct: 284 TVYLLGALEAEPAIEALVKRVGGTLEVKKLQRKSPLVMEKKPLGSLKNLQAGDVLIAFSR 343
Query: 249 HAIYRLK-KAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307
+ + +AIE S +YG+L PE R QA RF D E ++V +DAIGMGLN
Sbjct: 344 REVLNWRDQAIEQ--GFAVSAIYGNLSPEVRQAQAERFID--GETKIVVGTDAIGMGLNT 399
Query: 308 NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSL 367
R+IF+T K+DG ++ KQIAGRAGR+G+ G V LDS ++ L
Sbjct: 400 PARRVIFTTASKWDGYSEGEIPAALAKQIAGRAGRFGA-HEAGYVAGLDSHTHQIIANLL 458
Query: 368 LEPSPMLESAGLF--PNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFF-ANCEEVL 424
E + L ++G + P+ D + + S L +LE F ++ + + +F AN + +
Sbjct: 459 KETTEPLPASGFYVAPSLDYLQQIAAATGQSKLQALLELFTKHINVHDEFFLPANLADQI 518
Query: 425 KVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFA 463
+ A +D LPL L +++ F + PV + + L +A
Sbjct: 519 EKARWLDALPLTLADRFTFSLCPVSTKIPMLERALQDWA 557
>gi|410728685|ref|ZP_11366799.1| DNA/RNA helicase, superfamily II [Clostridium sp. Maddingley
MBC34-26]
gi|410596687|gb|EKQ51346.1| DNA/RNA helicase, superfamily II [Clostridium sp. Maddingley
MBC34-26]
Length = 585
Score = 246 bits (627), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 130/303 (42%), Positives = 188/303 (62%), Gaps = 9/303 (2%)
Query: 55 KKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLA 114
K+F+ T P YP AR RK +H+G TN+GKT+ AL RL+ + G+Y PLR+LA
Sbjct: 120 KEFEETFPKNPKDEYPAARSMKRKFYIHLGDTNTGKTYNALERLKRAKKGVYLSPLRILA 179
Query: 115 WEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
E ++LNK V CDL TG+E GA H + T+E ++ YD AVIDEIQM+ R
Sbjct: 180 LENYEKLNKEGVICDLQTGEEEIINVGATHISCTIEKVNLKEHYDIAVIDEIQMISDTFR 239
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G ++++A+LG+ +E+H+CG A +++ I+ D+ +++ Y+R +PL V +F
Sbjct: 240 GMAWSKAVLGLQCDEIHICGAANAKFILETIINDCKDEYEIKEYKR---AIPLEVEFKNF 296
Query: 235 S--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEF 292
S N+Q GD IV FS+ + + + RG SI+YG LPPE R Q +F + E
Sbjct: 297 SYGNVQEGDAIVVFSKKRVLEIAEEYSGRGIK-ASIIYGDLPPEVRKMQYEQF--VNKET 353
Query: 293 DVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV 352
+LV +DAIGMG+NL I RIIF +++KFDG E+R+LT EVKQ+ GRAGR G + VG +
Sbjct: 354 KILVTTDAIGMGVNLPIRRIIFMSIRKFDGEEVRELTSQEVKQVGGRAGRLGI-YDVGYI 412
Query: 353 TCL 355
+
Sbjct: 413 ASV 415
>gi|383757949|ref|YP_005436934.1| ATP-dependent RNA helicase [Rubrivivax gelatinosus IL144]
gi|381378618|dbj|BAL95435.1| ATP-dependent RNA helicase [Rubrivivax gelatinosus IL144]
Length = 751
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 159/412 (38%), Positives = 237/412 (57%), Gaps = 21/412 (5%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+P AR + R V L+VGP NSGKTH A RL + G Y PLRLLA E R+ V+C
Sbjct: 266 FPKARAQQRTVKLYVGPPNSGKTHAAFERLCQARDGTYLAPLRLLALEGRDRMVARGVAC 325
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
L+TG+E +GA+ + T+EM + + AV+DE QM+ RG+++T+A++ + A+
Sbjct: 326 SLLTGEENVPAEGARFVSSTIEMVSTNNPVEVAVVDEAQMIFDPARGWAWTQAIVAVPAS 385
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLS--PLVPLNVPLGSFSNIQTGDCIVTF 246
EL + AV I+ +L V G+ V+ +ER L+P VPLG +Q+GD +V F
Sbjct: 386 ELIIICSEYAVSAIENLLGVCGERCTVRRFERKQHVELLPRPVPLG---GLQSGDAVVAF 442
Query: 247 SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 306
SR + L+ AI + G+ + S++YG+LPPE R R+A RF AS E ++LVA+DAIGMGLN
Sbjct: 443 SRRDVLTLRDAIAANGRPV-SVIYGALPPEVRRREAERF--ASGESEILVATDAIGMGLN 499
Query: 307 LNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKS 366
L I R++FST+ KFDGV R L EV QIAGRAGR+G + G LD + P ++
Sbjct: 500 LPIRRVLFSTLSKFDGVGDRLLDESEVHQIAGRAGRFGMQ-EEGFTGVLDLAE-PTAART 557
Query: 367 LLE------PSPMLESAGLFPN-FDLIYMYSRLHPDSSLYGILEHFLENAKLSENYF-FA 418
L E +P A + PN + + + RL + L +L F+E KL + +F A
Sbjct: 558 LKELLHRQPKAPRQFKAPVAPNGWHVRTIAERLQ-ATRLREVLGVFVERLKLDDAHFAVA 616
Query: 419 NCEEVLKVATVIDQL--PLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
+ +L +A +D L L ++++ +PVD + + Q +A ++K
Sbjct: 617 ELDAMLALAEQLDHAAGALPLAARFVYAQAPVDTRSEDTVQEYLDWARGHAK 668
>gi|168215730|ref|ZP_02641355.1| helicase domain protein [Clostridium perfringens NCTC 8239]
gi|182382198|gb|EDT79677.1| helicase domain protein [Clostridium perfringens NCTC 8239]
Length = 585
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 197/328 (60%), Gaps = 16/328 (4%)
Query: 19 ILRDNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRK 78
+LR+N F LNS + ++++ + K+FD P Y R+ RK
Sbjct: 92 VLRNNYNVF-LNS-------GIMTLLVKHHIPELISKEFDEKFPANPKDEYLHTRRLKRK 143
Query: 79 VILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE 138
LH+G TN+GKT+ A+ RL+ G+Y PLR+LA E +RLN V C+L+TG+E
Sbjct: 144 FYLHLGETNTGKTYTAMQRLKEVRKGVYLSPLRILALENFERLNNEGVKCNLLTGEEEIL 203
Query: 139 VDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAA 198
+ A H + T+E A++ YD AVIDEIQM+ RG+++TRALLG+ E+H+CG A
Sbjct: 204 FEDATHVSCTIEKANIHERYDVAVIDEIQMIDDSQRGYAWTRALLGLYCTEIHICGAFNA 263
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKK 256
++++I++ GDD ++ Y R PL+ V SF N+Q GD +V FS+ + ++ +
Sbjct: 264 KNILKEIIEDCGDDYEIIEYHRDIPLI---VEDESFHPKNVQEGDALVLFSKKKVLQMAE 320
Query: 257 AIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFST 316
G CSI+YG LPPE R +Q F + + +L+ +DAIGMG+NL I RIIF +
Sbjct: 321 QYSQMGIK-CSIIYGDLPPEVRKKQYEEF--ITGKNKILITTDAIGMGVNLPIKRIIFLS 377
Query: 317 MKKFDGVELRDLTVPEVKQIAGRAGRYG 344
+ KFDG ++R+LT EVKQIAGRAGR G
Sbjct: 378 ISKFDGEQMRELTSQEVKQIAGRAGRKG 405
>gi|347539189|ref|YP_004846614.1| helicase domain containing protein [Pseudogulbenkiania sp. NH8B]
gi|345642367|dbj|BAK76200.1| helicase domain protein [Pseudogulbenkiania sp. NH8B]
Length = 658
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 150/399 (37%), Positives = 222/399 (55%), Gaps = 9/399 (2%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+ LA+ R I +GPTNSGKTH A+ L + +G Y PLRLLA E +RL A V+
Sbjct: 164 FTLAQSMRRHFIAVLGPTNSGKTHAAMEHLAQAGTGAYLAPLRLLALENYQRLLDAGVAV 223
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
LITG++R+ A H A TVEM + D AVIDEIQ+L RG ++T A+ G+ A+
Sbjct: 224 SLITGEQRKLHPDATHVASTVEMLNPNRPLDVAVIDEIQLLDDPDRGAAWTAAVCGVPAS 283
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
++L G A P I+ +++ G ++V+ +R SPLV PLGS N+Q GD ++ FSR
Sbjct: 284 TVYLLGALEAEPAIEALVKRVGGTLEVKKLQRKSPLVMEKKPLGSLKNLQAGDVLIAFSR 343
Query: 249 HAIYRLK-KAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307
+ + +AIE S +YG+L PE R QA RF D E ++V +DAIGMGLN
Sbjct: 344 REVLNWRDQAIEQ--GFAVSAIYGNLSPEVRQAQAERFID--GETKIVVGTDAIGMGLNT 399
Query: 308 NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSL 367
R+IF+T K+DG ++ KQIAGRAGR+G+ G V LDS ++ L
Sbjct: 400 PARRVIFTTASKWDGYSEGEIPAALAKQIAGRAGRFGA-HEAGYVAGLDSHTHQIIANLL 458
Query: 368 LEPSPMLESAGLF--PNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFF-ANCEEVL 424
E + L ++G + P+ D + + S L +LE F ++ + + +F AN + +
Sbjct: 459 KETTEPLPASGFYVAPSLDYLQQIAAATGQSKLQALLELFTKHINVHDEFFLPANLADQI 518
Query: 425 KVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFA 463
+ A +D LPL L +++ F + PV + + L +A
Sbjct: 519 EKARWLDALPLTLADRFTFSLCPVSTKIPMLERALQDWA 557
>gi|110799948|ref|YP_696782.1| helicase [Clostridium perfringens ATCC 13124]
gi|168208805|ref|ZP_02634430.1| helicase domain protein [Clostridium perfringens B str. ATCC 3626]
gi|168212860|ref|ZP_02638485.1| helicase domain protein [Clostridium perfringens CPE str. F4969]
gi|169343663|ref|ZP_02864662.1| helicase domain protein [Clostridium perfringens C str. JGS1495]
gi|182623912|ref|ZP_02951700.1| helicase domain protein [Clostridium perfringens D str. JGS1721]
gi|422875018|ref|ZP_16921503.1| helicase domain-containing protein [Clostridium perfringens F262]
gi|110674595|gb|ABG83582.1| helicase domain protein [Clostridium perfringens ATCC 13124]
gi|169298223|gb|EDS80313.1| helicase domain protein [Clostridium perfringens C str. JGS1495]
gi|170713065|gb|EDT25247.1| helicase domain protein [Clostridium perfringens B str. ATCC 3626]
gi|170715472|gb|EDT27654.1| helicase domain protein [Clostridium perfringens CPE str. F4969]
gi|177910805|gb|EDT73159.1| helicase domain protein [Clostridium perfringens D str. JGS1721]
gi|380304013|gb|EIA16306.1| helicase domain-containing protein [Clostridium perfringens F262]
Length = 585
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 197/328 (60%), Gaps = 16/328 (4%)
Query: 19 ILRDNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRK 78
+LR+N F LNS + ++++ + K+FD P Y R+ RK
Sbjct: 92 VLRNNYNVF-LNS-------GIMTLLVKHHIPELISKEFDEKFPANPKDEYLHTRRLKRK 143
Query: 79 VILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE 138
LH+G TN+GKT+ A+ RL+ G+Y PLR+LA E +RLN V C+L+TG+E
Sbjct: 144 FYLHLGETNTGKTYTAMQRLKEVRKGVYLSPLRILALENFERLNNEGVKCNLLTGEEEIL 203
Query: 139 VDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAA 198
+ A H + T+E A++ YD AVIDEIQM+ RG+++TRALLG+ E+H+CG A
Sbjct: 204 FEDATHVSCTIEKANIHERYDVAVIDEIQMIDDSQRGYAWTRALLGLYCTEIHICGAFNA 263
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKK 256
++++I++ GDD ++ Y R PL+ V SF N+Q GD +V FS+ + ++ +
Sbjct: 264 KNILKEIIEDCGDDYEIIEYHRDIPLI---VEDESFHPKNVQEGDALVLFSKKKVLQMAE 320
Query: 257 AIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFST 316
G CSI+YG LPPE R +Q F + + +L+ +DAIGMG+NL I RIIF +
Sbjct: 321 QYSQMGIK-CSIIYGDLPPEVRKKQYEEF--ITGKNKILITTDAIGMGVNLPIKRIIFLS 377
Query: 317 MKKFDGVELRDLTVPEVKQIAGRAGRYG 344
+ KFDG ++R+LT EVKQIAGRAGR G
Sbjct: 378 ISKFDGEQMRELTSQEVKQIAGRAGRKG 405
>gi|168205910|ref|ZP_02631915.1| helicase domain protein [Clostridium perfringens E str. JGS1987]
gi|170662616|gb|EDT15299.1| helicase domain protein [Clostridium perfringens E str. JGS1987]
Length = 585
Score = 245 bits (626), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 197/328 (60%), Gaps = 16/328 (4%)
Query: 19 ILRDNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRK 78
+LR+N F LNS + ++++ + K+FD P Y R+ RK
Sbjct: 92 VLRNNYNVF-LNS-------GIMTLLVKHHIPELISKEFDEKFPANPKDEYLHTRRLKRK 143
Query: 79 VILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE 138
LH+G TN+GKT+ A+ RL+ G+Y PLR+LA E +RLN V C+L+TG+E
Sbjct: 144 FYLHLGETNTGKTYTAMQRLKEVRKGVYLSPLRILALENFERLNNEGVKCNLLTGEEEIL 203
Query: 139 VDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAA 198
+ A H + T+E A++ YD AVIDEIQM+ RG+++TRALLG+ E+H+CG A
Sbjct: 204 FEDATHVSCTIEKANIHERYDVAVIDEIQMIDDSQRGYAWTRALLGLYCTEIHICGAFNA 263
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKK 256
++++I++ GDD ++ Y R PL+ V SF N+Q GD +V FS+ + ++ +
Sbjct: 264 KNILKEIIEDCGDDYEIIEYHRDIPLI---VEDESFHPKNVQEGDALVLFSKKKVLQMAE 320
Query: 257 AIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFST 316
G CSI+YG LPPE R +Q F + + +L+ +DAIGMG+NL I RIIF +
Sbjct: 321 QYSQMGIK-CSIIYGDLPPEVRKKQYEEF--ITGKNKILITTDAIGMGVNLPIKRIIFLS 377
Query: 317 MKKFDGVELRDLTVPEVKQIAGRAGRYG 344
+ KFDG ++R+LT EVKQIAGRAGR G
Sbjct: 378 ISKFDGEQMRELTSQEVKQIAGRAGRKG 405
>gi|422346769|ref|ZP_16427683.1| hypothetical protein HMPREF9476_01756 [Clostridium perfringens
WAL-14572]
gi|373226314|gb|EHP48641.1| hypothetical protein HMPREF9476_01756 [Clostridium perfringens
WAL-14572]
Length = 585
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 197/328 (60%), Gaps = 16/328 (4%)
Query: 19 ILRDNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRK 78
+LR+N F LNS + ++++ + K+FD P Y R+ RK
Sbjct: 92 VLRNNYNVF-LNS-------GIMTLLVKHHIPELISKEFDEKFPANPKDEYLHTRRLKRK 143
Query: 79 VILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE 138
LH+G TN+GKT+ A+ RL+ G+Y PLR+LA E +RLN V C+L+TG+E
Sbjct: 144 FYLHLGETNTGKTYTAMQRLKEVRKGVYLSPLRILALENFERLNNEGVKCNLLTGEEEIL 203
Query: 139 VDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAA 198
+ A H + T+E A++ YD AVIDEIQM+ RG+++TRALLG+ E+H+CG A
Sbjct: 204 FEDATHVSCTIEKANIHERYDVAVIDEIQMIDDSQRGYAWTRALLGLYCTEIHICGAFNA 263
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKK 256
++++I++ GDD ++ Y R PL+ V SF N+Q GD +V FS+ + ++ +
Sbjct: 264 KNILKEIIEDCGDDYEIIEYHRDIPLI---VEDESFHPKNVQEGDALVLFSKKKVLQMAE 320
Query: 257 AIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFST 316
G CSI+YG LPPE R +Q F + + +L+ +DAIGMG+NL I RIIF +
Sbjct: 321 QYSQMGIK-CSIIYGDLPPEVRKKQYEEF--ITGKNKILITTDAIGMGVNLPIKRIIFLS 377
Query: 317 MKKFDGVELRDLTVPEVKQIAGRAGRYG 344
+ KFDG ++R+LT EVKQIAGRAGR G
Sbjct: 378 ISKFDGEQMRELTSQEVKQIAGRAGRKG 405
>gi|18311084|ref|NP_563018.1| helicase domain-containing protein [Clostridium perfringens str.
13]
gi|18145767|dbj|BAB81808.1| probable ATP-dependent RNA helicase [Clostridium perfringens str.
13]
Length = 585
Score = 245 bits (626), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 197/328 (60%), Gaps = 16/328 (4%)
Query: 19 ILRDNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRK 78
+LR+N F LNS + ++++ + K+FD P Y R+ RK
Sbjct: 92 VLRNNYNVF-LNS-------GIMTLLVKHHIPELISKEFDEKFPANPKDEYLHTRRLKRK 143
Query: 79 VILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE 138
LH+G TN+GKT+ A+ RL+ G+Y PLR+LA E +RLN V C+L+TG+E
Sbjct: 144 FYLHLGETNTGKTYTAMQRLKEVRKGVYLSPLRILALENFERLNNEGVKCNLLTGEEEIL 203
Query: 139 VDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAA 198
+ A H + T+E A++ YD AVIDEIQM+ RG+++TRALLG+ E+H+CG A
Sbjct: 204 FEDATHVSCTIEKANIHERYDVAVIDEIQMIDDSQRGYAWTRALLGLYCTEIHICGAFNA 263
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKK 256
++++I++ GDD ++ Y R PL+ V SF N+Q GD +V FS+ + ++ +
Sbjct: 264 KNILKEIIEDCGDDYEIIEYHRDIPLI---VEDESFHPKNVQEGDALVLFSKKKVLQMAE 320
Query: 257 AIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFST 316
G CSI+YG LPPE R +Q F + + +L+ +DAIGMG+NL I RIIF +
Sbjct: 321 QYSQMGIK-CSIIYGDLPPEVRKKQYEEF--ITGKNKILITTDAIGMGVNLPIKRIIFLS 377
Query: 317 MKKFDGVELRDLTVPEVKQIAGRAGRYG 344
+ KFDG ++R+LT EVKQIAGRAGR G
Sbjct: 378 ISKFDGEQMRELTSQEVKQIAGRAGRKG 405
>gi|70936926|ref|XP_739340.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56516265|emb|CAH84314.1| hypothetical protein PC300972.00.0 [Plasmodium chabaudi chabaudi]
Length = 389
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 132/333 (39%), Positives = 198/333 (59%), Gaps = 27/333 (8%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
DFT++ + RK+ L+VGPTNSGKTH+A ++ S +G+YC PLRLL WE+
Sbjct: 56 DFTEINEIR---KMKNNLNRKLYLYVGPTNSGKTHEAFNKFIDSKNGLYCSPLRLLTWEI 112
Query: 118 AKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
K+L S +L+TGQE + + H T+EM + YDCA+IDEIQM+ RG++
Sbjct: 113 HKKLLNLKKSANLLTGQEIIKKANSTHTVCTIEMTPLNEKYDCAIIDEIQMINNSIRGYA 172
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNI 237
+T L+ + E++LCG V LI+++ + D V ++ ++RL+ L L + ++
Sbjct: 173 WTHVLMNLKCEEIYLCGSEHIVNLIKELSDILHDQVIIKRFKRLNKL-KLEKNIQPLDDV 231
Query: 238 QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFN-------DASS 290
+TGDCI++FSR+ I LK +E K + ++YG+LPPE++ +Q FN ++S
Sbjct: 232 KTGDCIISFSRNNIMLLKNKLEKLNKRV-FVIYGTLPPESKKKQIELFNYYCELAKSSNS 290
Query: 291 EFD----------VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 340
VLVA+D IGMGLN+ I RIIF ++KK+DG +R L V E+ QIAGRA
Sbjct: 291 NIKNETHGIEKETVLVATDVIGMGLNIKIKRIIFYSLKKYDGDIIRYLNVSEILQIAGRA 350
Query: 341 GRYGSKF----PVGEVTCLDSEDLPLLHKSLLE 369
GR+ G VTC++ ED+ +L K+L E
Sbjct: 351 GRFDENCSGNSSDGFVTCVNYEDMKIL-KNLFE 382
>gi|296114989|ref|ZP_06833633.1| helicase domain protein [Gluconacetobacter hansenii ATCC 23769]
gi|295978451|gb|EFG85185.1| helicase domain protein [Gluconacetobacter hansenii ATCC 23769]
Length = 814
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 158/427 (37%), Positives = 239/427 (55%), Gaps = 17/427 (3%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+ AR R++ L GPTNSGK+H AL L + SG+ PLRLLA E + L V
Sbjct: 305 FTTARALKRRITLVTGPTNSGKSHTALDALARAESGLALAPLRLLAHEFRESLTARGVPT 364
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
L TG+ER +V G++H A TVEM + + D A+IDE QML RG ++T A++G A
Sbjct: 365 SLATGEERIDVPGSRHLAATVEMCPLNNPVDVAIIDEAQMLTDPDRGAAWTAAIMGAPAR 424
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
L + G P +P++++I ++ GD V ER SPLV ++P+ ++Q D ++ FSR
Sbjct: 425 HLFILGAPDCIPMVRRIAELCGDPVDEVHLERKSPLVAADMPV-RIQDLQPHDALIAFSR 483
Query: 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308
+ L+ + + G+ + ++VYG+L PE R +A RFN E D+L+A+DAIGMGLNL
Sbjct: 484 REVLDLRALLLAHGRRV-AVVYGALSPEVRRAEAQRFN--RGEADILIATDAIGMGLNLT 540
Query: 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLP-LLHKSL 367
I R++F+ ++KFDG + RDL EVKQI GRAGR+G K G V+ L+ P +H L
Sbjct: 541 IRRVVFAALRKFDGTQTRDLNAQEVKQIGGRAGRFG-KHEKGIVSVLEGVGSPSFIHAML 599
Query: 368 LEPSPMLES--AGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA--KLSENYFFANCEEV 423
P L+ + P+ D++ + SL+G+L + NY AN E+
Sbjct: 600 AAPPAQLDDLRPQVQPDADIVQAVAAEIGSDSLFGVLVRIRRAVLRRDDPNYRLANMEQA 659
Query: 424 LKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGL 482
+AT ++ + L L +++++ + PVD D+ Q L +A +++ V PG
Sbjct: 660 FAIATALEGVEGLTLAQRWVYAMCPVDDRDN-GIQRLVGWAADHAAGHAVP-----PPGT 713
Query: 483 GSLRVAE 489
G L AE
Sbjct: 714 GRLPPAE 720
>gi|5103037|dbj|BAA78770.1| probable ATP-dependent RNA helicase [Clostridium perfringens]
Length = 585
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 135/328 (41%), Positives = 197/328 (60%), Gaps = 16/328 (4%)
Query: 19 ILRDNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRK 78
+LR+N F LNS + ++++ + K+FD P Y R+ RK
Sbjct: 92 VLRNNYNVF-LNS-------GIMTLLVKHHIPELISKEFDEKFPANPKDEYLHTRRLKRK 143
Query: 79 VILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE 138
LH+G TN+GKT+ A+ RL+ G+Y PLR+LA E +RLN V C+L+TG+E
Sbjct: 144 FYLHLGETNTGKTYTAMQRLKEVRKGVYLSPLRILALENFERLNNEGVKCNLLTGEEEIL 203
Query: 139 VDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAA 198
+ A H + T+E A++ YD AVIDEIQM+ RG+++TRALLG+ E+H+CG A
Sbjct: 204 FEDATHVSCTIEKANIHERYDVAVIDEIQMIDDSQRGYAWTRALLGLYCTEIHICGAFNA 263
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKK 256
++++I++ GDD ++ Y R PL+ V SF N+Q GD +V FS+ + ++ +
Sbjct: 264 KNILKEIIEDCGDDYEIIEYHRDIPLI---VEDESFHPKNVQEGDALVLFSKKKVLQMAE 320
Query: 257 AIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFST 316
G CSI+YG LPPE R +Q F + + +L+ +DAIGMG+NL I RIIF +
Sbjct: 321 QYSQMGIK-CSIIYGDLPPEVRKKQYEEF--ITGKNKILITTDAIGMGVNLPIKRIIFLS 377
Query: 317 MKKFDGVELRDLTVPEVKQIAGRAGRYG 344
+ KFDG ++R+LT EVKQIAGRAGR G
Sbjct: 378 ISKFDGEQMRELTSQEVKQIAGRAGRKG 405
>gi|429764545|ref|ZP_19296859.1| helicase protein [Clostridium celatum DSM 1785]
gi|429187827|gb|EKY28729.1| helicase protein [Clostridium celatum DSM 1785]
Length = 453
Score = 245 bits (625), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 130/319 (40%), Positives = 199/319 (62%), Gaps = 10/319 (3%)
Query: 65 PHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKA 124
P Y + R+ RK+ +H+G TN+GKT+ A+ RL+++ G+Y PLR+LA E ++LN
Sbjct: 130 PKDEYMITRRMKRKIYIHLGDTNTGKTYNAVERLKTAKKGVYLSPLRILALENYEKLNNE 189
Query: 125 NVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLG 184
V CDL+TG+E + A H + T+E ++ +YD AVIDEIQM+ RG +++RA+LG
Sbjct: 190 GVVCDLMTGEEEIIKENATHISCTIEKVNLKQNYDIAVIDEIQMINDNQRGIAWSRAVLG 249
Query: 185 ICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS--NIQTGDC 242
+ NE+H+CG A L+ ++L DD +++ Y R +PL V +FS ++Q GD
Sbjct: 250 LRCNEIHICGAMNAKELLIKMLDDCEDDYEIKEYHR---NIPLEVETKNFSYNDVQEGDA 306
Query: 243 IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 302
IV FS+ + + ++ S SI+YG LPPE R Q +F + E VLV +DAIG
Sbjct: 307 IVVFSKKRVLEIAQSY-SNNNVKTSIIYGDLPPEVRKMQYEQF--INKENKVLVTTDAIG 363
Query: 303 MGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPL 362
MG+NL I RIIF +++KFDG E+R+LT E+KQ+AGRAGR G + +G V + S+ +
Sbjct: 364 MGVNLPIRRIIFMSIRKFDGEEVRELTSQEIKQVAGRAGRKGI-YDIGYVAGV-SDTHNI 421
Query: 363 LHKSLLEPSPMLESAGLFP 381
+ + L E +++ A + P
Sbjct: 422 ISRKLEEKDEVIKQAVIGP 440
>gi|421853095|ref|ZP_16285775.1| RNA helicase [Acetobacter pasteurianus subsp. pasteurianus LMG 1262
= NBRC 106471]
gi|371478672|dbj|GAB30978.1| RNA helicase [Acetobacter pasteurianus subsp. pasteurianus LMG 1262
= NBRC 106471]
Length = 782
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 162/427 (37%), Positives = 240/427 (56%), Gaps = 17/427 (3%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+ AR R++ L GPTNSGK++ AL+ L + SG+ PLRLLA E + L V
Sbjct: 303 FRTARALNRQITLVTGPTNSGKSYTALNALAQAESGLALAPLRLLAHEFREALASRGVEA 362
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
L TG+ER V G+KH A TVEM S D AVIDE QML RG ++T A++G A
Sbjct: 363 SLSTGEERIVVPGSKHLAATVEMCPFYSPVDVAVIDEAQMLFDTDRGAAWTAAIMGAPAR 422
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
L++ G P +P++++I ++ GD + S ER SPL + P+ +++ +GD ++ FSR
Sbjct: 423 HLYVLGAPDCIPMVRRIAELCGDPLDEISLERKSPLRAASHPV-RLADLGSGDALIAFSR 481
Query: 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308
+ L+ A+ GK + ++VYG+L PE R +A RFND E D+LVA+DAIGMGLNL+
Sbjct: 482 REVLDLRAALLQHGKRV-AVVYGALSPEVRRAEAQRFNDG--EADILVATDAIGMGLNLS 538
Query: 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL 368
I R++F+ +KK+DG + RDLTV EVKQI GRAGR+G K G V L P + L
Sbjct: 539 IKRVVFAALKKYDGRQTRDLTVQEVKQIGGRAGRFG-KHETGVVAVLAGAGSPTFIRRQL 597
Query: 369 EPSPMLES---AGLFPNFDLIYMYSRLHPDSSLYGILE--HFLENAKLSENYFFANCEEV 423
E P + P+ D++ + SLYG+L H K NY ++ E+
Sbjct: 598 EADPEQPDDLRPYVQPDADIVKAVAAEIGSQSLYGVLSRIHRAVLRKDDPNYRLSDMEQA 657
Query: 424 LKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGL 482
+A+ ++ + L L ++ + + PVD D+ + L +A +++ R + PG
Sbjct: 658 FAIASALEGVEGLDLTTRWSYAMCPVDDRDN-GIRRLVGWAADHAAG-----RRVLPPGT 711
Query: 483 GSLRVAE 489
G L +E
Sbjct: 712 GRLPASE 718
>gi|16197971|gb|AAL13756.1| LD23445p [Drosophila melanogaster]
Length = 499
Score = 244 bits (624), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 131/325 (40%), Positives = 198/325 (60%), Gaps = 7/325 (2%)
Query: 151 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 210
M V + Y+ AVIDEIQ + RG+++TRA LG+ A+E+H+CG+P A+ L+Q+I + TG
Sbjct: 1 MTSVNTPYEVAVIDEIQQIRDPQRGWAWTRAFLGLIADEVHVCGEPGALDLLQKICETTG 60
Query: 211 DDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVY 270
+ V+V+ Y+RL+ L N LGS NI GDCIV FS+H IY + + IE+RGK + +++Y
Sbjct: 61 ETVEVRLYDRLTELTVENTALGSLDNIVPGDCIVCFSKHDIYTVSREIEARGKEV-AVIY 119
Query: 271 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF-----STMKKFDGVEL 325
G LPP T+ QA +FND ++ V+VA+DAIGMGLNL+I RIIF +M + E+
Sbjct: 120 GGLPPGTKLAQAAKFNDPANSCKVMVATDAIGMGLNLSIRRIIFYSLIKPSMNERGEREI 179
Query: 326 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 385
++V QIAGRAGR+ +++ G VT SEDL L + L ++ AGL P D
Sbjct: 180 DTISVSSALQIAGRAGRFRTQWEHGYVTAFKSEDLQTLQRILARTPEPIKQAGLHPTADQ 239
Query: 386 IYMYSRLHPDSSLYGILEHFLENAKLSEN-YFFANCEEVLKVATVIDQLPLRLHEKYLFC 444
I +Y+ P SSL +++ F+ + ++ YF N E+ +A +I + L L +Y+FC
Sbjct: 240 IELYAYHLPSSSLSNLMDIFVNLCTVDDSLYFMCNIEDFKFLAEMIQHVALPLRARYVFC 299
Query: 445 ISPVDMNDDISSQGLTQFATNYSKK 469
+P++ + A YS+
Sbjct: 300 CAPINRKMPFVCSMFLKVARQYSRN 324
>gi|258541211|ref|YP_003186644.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01]
gi|384041132|ref|YP_005479876.1| RNA helicase [Acetobacter pasteurianus IFO 3283-12]
gi|384049647|ref|YP_005476710.1| RNA helicase [Acetobacter pasteurianus IFO 3283-03]
gi|384052757|ref|YP_005485851.1| RNA helicase [Acetobacter pasteurianus IFO 3283-07]
gi|384055989|ref|YP_005488656.1| RNA helicase [Acetobacter pasteurianus IFO 3283-22]
gi|384058630|ref|YP_005497758.1| RNA helicase [Acetobacter pasteurianus IFO 3283-26]
gi|384061924|ref|YP_005482566.1| RNA helicase [Acetobacter pasteurianus IFO 3283-32]
gi|384118000|ref|YP_005500624.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|421849294|ref|ZP_16282276.1| RNA helicase [Acetobacter pasteurianus NBRC 101655]
gi|256632289|dbj|BAH98264.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01]
gi|256635346|dbj|BAI01315.1| RNA helicase [Acetobacter pasteurianus IFO 3283-03]
gi|256638401|dbj|BAI04363.1| RNA helicase [Acetobacter pasteurianus IFO 3283-07]
gi|256641455|dbj|BAI07410.1| RNA helicase [Acetobacter pasteurianus IFO 3283-22]
gi|256644510|dbj|BAI10458.1| RNA helicase [Acetobacter pasteurianus IFO 3283-26]
gi|256647565|dbj|BAI13506.1| RNA helicase [Acetobacter pasteurianus IFO 3283-32]
gi|256650618|dbj|BAI16552.1| RNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256653609|dbj|BAI19536.1| RNA helicase [Acetobacter pasteurianus IFO 3283-12]
gi|371459932|dbj|GAB27479.1| RNA helicase [Acetobacter pasteurianus NBRC 101655]
Length = 782
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 162/427 (37%), Positives = 240/427 (56%), Gaps = 17/427 (3%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+ AR R++ L GPTNSGK++ AL+ L + SG+ PLRLLA E + L V
Sbjct: 303 FRTARALNRQITLVTGPTNSGKSYTALNALAQAESGLALAPLRLLAHEFREALASRGVEA 362
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
L TG+ER V G+KH A TVEM S D AVIDE QML RG ++T A++G A
Sbjct: 363 SLSTGEERIVVPGSKHLAATVEMCPFYSPVDVAVIDEAQMLFDTDRGAAWTAAIMGAPAR 422
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
L++ G P +P++++I ++ GD + S ER SPL + P+ +++ +GD ++ FSR
Sbjct: 423 HLYVLGAPDCIPMVRRIAELCGDPLDEISLERKSPLRAASHPV-RLADLGSGDALIAFSR 481
Query: 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308
+ L+ A+ GK + ++VYG+L PE R +A RFND E D+LVA+DAIGMGLNL+
Sbjct: 482 REVLDLRAALLQHGKRV-AVVYGALSPEVRRAEAQRFNDG--EADILVATDAIGMGLNLS 538
Query: 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL 368
I R++F+ +KK+DG + RDLTV EVKQI GRAGR+G K G V L P + L
Sbjct: 539 IKRVVFAALKKYDGRQTRDLTVQEVKQIGGRAGRFG-KHETGIVAVLAGAGSPTFIRRQL 597
Query: 369 EPSPMLES---AGLFPNFDLIYMYSRLHPDSSLYGILE--HFLENAKLSENYFFANCEEV 423
E P + P+ D++ + SLYG+L H K NY ++ E+
Sbjct: 598 EADPEQPDDLRPYVQPDADIVKAVAAEIGSQSLYGVLSRIHRAVLRKDDPNYRLSDMEQA 657
Query: 424 LKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGL 482
+A+ ++ + L L ++ + + PVD D+ + L +A +++ R + PG
Sbjct: 658 FAIASALEGVEGLDLTTRWSYAMCPVDDRDN-GIRRLVGWAADHAAG-----RRVLPPGT 711
Query: 483 GSLRVAE 489
G L +E
Sbjct: 712 GRLPASE 718
>gi|384484725|gb|EIE76905.1| hypothetical protein RO3G_01609 [Rhizopus delemar RA 99-880]
Length = 378
Score = 244 bits (624), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 138/329 (41%), Positives = 195/329 (59%), Gaps = 40/329 (12%)
Query: 151 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 210
MA + D AVIDEIQ++ RG+++T+ALLG+ A E+HLCG+ AAVPLI++I +
Sbjct: 1 MASIGRPLDVAVIDEIQLIADPNRGWAWTQALLGLKAKEIHLCGEEAAVPLIRKICEDLD 60
Query: 211 DDVKVQSYERLSPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 269
++V V Y RL+P ++PL S S I+ GDC+V FSR I+ LKK IE++ C++
Sbjct: 61 EEVVVNKYGRLTPYTVSDMPLKSDLSQIEKGDCVVAFSRMNIFDLKKRIEAQTGLKCAVA 120
Query: 270 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 329
YGSLPPETR QA FND S DVLVASDA+GMGLNLNI R++FS +KKFDG E+R ++
Sbjct: 121 YGSLPPETRALQAKSFNDPDSGIDVLVASDAVGMGLNLNIKRVVFSNIKKFDGKEVRPIS 180
Query: 330 VPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMY 389
+P++KQIAGRAGR+G+ + G VT L+ DL + +++ P+ LE
Sbjct: 181 IPQLKQIAGRAGRFGTAYGNGIVTALNRADLRYIKEAVAAPNVELE-------------- 226
Query: 390 SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVD 449
P+ + G+L N EE+ +LPLR ++Y F +PV
Sbjct: 227 ---MPNETFSGLL------------LIADNLEEI--------RLPLR--DRYQFVTAPVS 261
Query: 450 MNDDISSQGLTQFATNYSKKGIVQLREIF 478
D S + + A +S+K I L E+
Sbjct: 262 TRSDESMELIKILARKFSQKKICTLDELI 290
>gi|329114819|ref|ZP_08243576.1| Helicase Domain-Containing Protein [Acetobacter pomorum DM001]
gi|326695950|gb|EGE47634.1| Helicase Domain-Containing Protein [Acetobacter pomorum DM001]
Length = 782
Score = 244 bits (623), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 161/423 (38%), Positives = 237/423 (56%), Gaps = 17/423 (4%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+ AR R++ L GPTNSGK++ AL+ L + SG+ PLRLLA E + L V
Sbjct: 303 FRTARALNRQITLVTGPTNSGKSYTALNALAQAESGLALAPLRLLAHEFREALASRGVEA 362
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
L TG+ER V G+KH A TVEM S D AVIDE QML RG ++T A++G A
Sbjct: 363 SLSTGEERIVVPGSKHLAATVEMCPFYSPVDVAVIDEAQMLFDTDRGAAWTAAIMGAPAR 422
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
L++ G P +P++++I ++ GD + S ER SPL + P+ +++ GD ++ FSR
Sbjct: 423 HLYVLGAPDCIPMVRRIAELCGDPLDEISLERKSPLRAASHPV-RLADLGAGDALIAFSR 481
Query: 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308
+ L+ A+ GK + ++VYG+L PE R +A RFND E D+LVA+DAIGMGLNL+
Sbjct: 482 REVLDLRAALLQHGKRV-AVVYGALSPEVRRAEAQRFNDG--EADILVATDAIGMGLNLS 538
Query: 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL 368
I R++F+ +KK+DG + RDLTV EVKQI GRAGR+G K G V L P + L
Sbjct: 539 IKRVVFAALKKYDGRQTRDLTVQEVKQIGGRAGRFG-KHETGVVAVLAGAGSPTFIRRQL 597
Query: 369 EPSPMLES---AGLFPNFDLIYMYSRLHPDSSLYGILE--HFLENAKLSENYFFANCEEV 423
E P + P+ D++ + SLYG+L H K NY ++ E+
Sbjct: 598 EADPEQPDDLRPYVQPDADIVKAVATEIGSQSLYGVLSRIHRAVLRKDDPNYRLSDMEQA 657
Query: 424 LKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGL 482
+A+ ++ + L L ++ + + PVD D+ + L +A +++ R + PG
Sbjct: 658 FAIASALEGVEGLDLTTRWSYAMCPVDDRDN-GIRRLVGWAADHAAG-----RRVLPPGT 711
Query: 483 GSL 485
G L
Sbjct: 712 GRL 714
>gi|354593623|ref|ZP_09011666.1| helicase Domain-Containing Protein [Commensalibacter intestini
A911]
gi|353672734|gb|EHD14430.1| helicase Domain-Containing Protein [Commensalibacter intestini
A911]
Length = 775
Score = 244 bits (622), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 149/403 (36%), Positives = 231/403 (57%), Gaps = 14/403 (3%)
Query: 72 ARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLI 131
AR R++ + GPTNSGK++ AL + S SGI PLRLLA E + LN+ +++ L
Sbjct: 302 ARSLKRRITIVTGPTNSGKSYTALKTMAESESGIALAPLRLLAHEFREALNERDIATSLK 361
Query: 132 TGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH 191
TG+ER+ + +K A TVEM + + D A+IDE QML RG ++T A++G+ A +
Sbjct: 362 TGEERQLIPNSKFLAATVEMCPMDNPVDVALIDEAQMLTDPDRGAAWTAAIMGVPARHVF 421
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
+ G P +PL++ I ++ D + S +R S L + P+ + + +GD ++ FSR +
Sbjct: 422 VLGSPECIPLVKNIARLCDDPWEEISLQRKSVLQTASSPI-RLNQLHSGDALIAFSRREV 480
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
L+ + +G H +++YG+L PE R +A RFND +E +L+A+DAIGMGLNL+I R
Sbjct: 481 LDLRAILMQKG-HRVAVIYGALSPEVRRAEAKRFNDGEAE--ILIATDAIGMGLNLSIKR 537
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPS 371
+IFST+ KFDG R LT EVKQI GRAGRYG K G V L P + LE +
Sbjct: 538 VIFSTIYKFDGTSRRLLTSQEVKQIGGRAGRYG-KHETGTVGLLAGAGDPDFIRRQLEAA 596
Query: 372 PMLES---AGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKL---SENYFFANCEEVLK 425
P + + P+ D++ + + SL+G+L L+ A L NY A EE
Sbjct: 597 PEKQKDLRPLVQPDSDIVQLIANEINSDSLFGVLTR-LKRAVLRPDDPNYRLAPMEETFA 655
Query: 426 VATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYS 467
+A+ ++ + L L ++ + + PVD D+ Q L ++A +++
Sbjct: 656 IASALEGVQDLELKNRWTYSVCPVDDRDN-GIQRLIRWAADHA 697
>gi|451819288|ref|YP_007455489.1| superfamily II DNA and RNA helicase [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451785267|gb|AGF56235.1| superfamily II DNA and RNA helicase [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 585
Score = 244 bits (622), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 125/292 (42%), Positives = 185/292 (63%), Gaps = 8/292 (2%)
Query: 55 KKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLA 114
K+F+ P Y +AR RK +H+G TN+GKT+ AL RL+S+ G+Y PLR+LA
Sbjct: 120 KEFEENFPKNPKDEYLIARSMKRKFYIHLGDTNTGKTYNALQRLKSAKKGVYLSPLRILA 179
Query: 115 WEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
E +RLN V C+L+TG+E + A H + T+E ++ Y+ AVIDEIQM+ R
Sbjct: 180 LENYERLNSEGVLCNLMTGEEEIINEAATHTSCTIEKVNLREHYEIAVIDEIQMISDPFR 239
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G ++++A+LG+ +E+H+CG A +++ I++ DD +++ Y R +PL V +F
Sbjct: 240 GMAWSKAVLGLQCDEIHICGAANAKYILETIIKDCKDDFEIKEYTR---AIPLEVEFKNF 296
Query: 235 S--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEF 292
S +IQ GD IV FS+ + + + SRG S++YG LPPE R Q T+F + E
Sbjct: 297 SYNDIQEGDAIVVFSKKRVLEIAEEYSSRGIK-ASVIYGDLPPEVRKMQYTQF--VNKET 353
Query: 293 DVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
+LV +DAIGMG+NL I RIIF +++KFDG E+R+LT E+KQ+ GRAGR G
Sbjct: 354 KILVTTDAIGMGVNLPIRRIIFMSIRKFDGEEVRELTSQEIKQVGGRAGRIG 405
>gi|110802850|ref|YP_699375.1| helicase domain-containing protein [Clostridium perfringens SM101]
gi|110683351|gb|ABG86721.1| helicase domain protein [Clostridium perfringens SM101]
Length = 585
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 133/328 (40%), Positives = 197/328 (60%), Gaps = 16/328 (4%)
Query: 19 ILRDNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRK 78
+LR+N F LNS + ++++ + K+FD P Y R+ RK
Sbjct: 92 VLRNNYNVF-LNS-------GIMTLLVKHHIPELISKEFDEKFPANPKDEYLHTRRLKRK 143
Query: 79 VILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE 138
LH+G TN+GKT+ A+ RL+ G+Y PLR+LA E +RLN + C+L+TG+E
Sbjct: 144 FYLHLGETNTGKTYTAMQRLKEVRKGVYLSPLRILALENFERLNNEGIKCNLLTGEEEIL 203
Query: 139 VDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAA 198
+ A H + T+E A++ YD AVIDEIQM+ RG+++TRALLG+ E+H+CG A
Sbjct: 204 FEDATHVSCTIEKANIHEKYDVAVIDEIQMIDDSQRGYAWTRALLGLYCTEIHICGAFNA 263
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKK 256
++++I++ GDD ++ Y R PL+ V SF N++ GD +V FS+ + ++ +
Sbjct: 264 KNILKEIIEDCGDDYEIIEYHRDIPLI---VEDESFHPKNVKEGDALVLFSKKKVLQMAE 320
Query: 257 AIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFST 316
G CSI+YG LPPE R +Q F + + +L+ +DAIGMG+NL I RIIF +
Sbjct: 321 QYSQMGIK-CSIIYGDLPPEVRKKQYEEF--ITGKNKILITTDAIGMGVNLPIKRIIFLS 377
Query: 317 MKKFDGVELRDLTVPEVKQIAGRAGRYG 344
+ KFDG ++R+LT EVKQIAGRAGR G
Sbjct: 378 ISKFDGEQMRELTSQEVKQIAGRAGRKG 405
>gi|374292022|ref|YP_005039057.1| putative DNA/RNA helicase [Azospirillum lipoferum 4B]
gi|357423961|emb|CBS86824.1| putative DNA/RNA helicase [Azospirillum lipoferum 4B]
Length = 733
Score = 243 bits (621), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 146/381 (38%), Positives = 222/381 (58%), Gaps = 13/381 (3%)
Query: 55 KKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLA 114
+ FDF+ R +P+AR R+++L +GPTNSGKTH+A++ L + G+Y PLRLLA
Sbjct: 233 RHFDFSRFER---LFPVARGMNRRLVLVIGPTNSGKTHRAITALREARDGVYLAPLRLLA 289
Query: 115 WEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
EV +RLN LITG+E GA+H A T+E+ D + AVIDEIQML R
Sbjct: 290 LEVMERLNAEGTPTTLITGEEEIRTPGARHTASTIEVMDPDRPVEVAVIDEIQMLADPAR 349
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++T AL+G+ A +++ G P PL+++ G+ ++V +R +PL L+ L +
Sbjct: 350 GWAWTAALMGVPAETVYILGAPEVRPLVERAAAHLGEALEVVELDRKTPLSMLDRRL-DW 408
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
+ ++ GD ++ FSR ++ ++ + ++G + +I YG+L P R R+A RF S E DV
Sbjct: 409 AEVERGDALIAFSRREVHSVRDTLLAQGLSVAAI-YGALAPAVRRREAARF--LSGEADV 465
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 354
+VA+DAIGMGLNL R++F+ ++KFDG +R LT EVKQIAGRAGR+G +F G
Sbjct: 466 VVATDAIGMGLNLPCRRVLFTALEKFDGSSVRPLTATEVKQIAGRAGRFG-QFEEGHFGV 524
Query: 355 LDSEDLPLLHKSLLE-PSPMLESAGLFPNFDLIYMYSRL--HPDSSLYGILEHFLENAKL 411
+ + P K LLE P L + P M +RL H DS +L A+
Sbjct: 525 I-ARGTPTALKRLLEAPDRRLRADAPLPVRPTRAMLARLASHIDSDETRLLVECFGTAET 583
Query: 412 SENYF-FANCEEVLKVATVID 431
+ + F A+ + + A ++D
Sbjct: 584 AGSPFRLADLSALHRAAPMLD 604
>gi|330993313|ref|ZP_08317248.1| ATP-dependent RNA helicase suv3 [Gluconacetobacter sp. SXCC-1]
gi|329759343|gb|EGG75852.1| ATP-dependent RNA helicase suv3 [Gluconacetobacter sp. SXCC-1]
Length = 817
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 157/424 (37%), Positives = 236/424 (55%), Gaps = 17/424 (4%)
Query: 72 ARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLI 131
AR R++ L GPTNSGK+H AL L + SG+ PLRLLA E + L V L
Sbjct: 308 ARALKRRITLVTGPTNSGKSHTALDALARAESGLALAPLRLLAHEFRESLTARGVPTSLA 367
Query: 132 TGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH 191
TG+ER +V G++H A TVEM + + D A+IDE QML RG ++T A++G A L
Sbjct: 368 TGEERIDVPGSRHLAATVEMCPLNNPVDVAIIDEAQMLTDPDRGAAWTAAIMGAPARHLF 427
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
+ G P +P++++I ++ GD + ER SPLV + S +Q D ++ FSR +
Sbjct: 428 ILGAPDCIPMVRRIAELCGDPIDEIRLERKSPLVAAERAV-SLHELQKHDALIAFSRREV 486
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
L+ + + GK + ++VYG+L PE R +A RFN+ + D+L+A+DAIGMGLNL I R
Sbjct: 487 LDLRALLLAHGKRV-AVVYGALSPEVRRAEAQRFNNGDA--DILIATDAIGMGLNLTIRR 543
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLP-LLHKSLLEP 370
++F+ ++K+DG + RDL EVKQI GRAGR+G K G V L+ P +H L P
Sbjct: 544 VVFAALRKYDGNQTRDLNPQEVKQIGGRAGRFG-KHEQGVVAVLEGVGSPSFIHAMLAAP 602
Query: 371 SPMLES--AGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA--KLSENYFFANCEEVLKV 426
+E + P+ D++ + SL+G+L + NY AN E+ +
Sbjct: 603 PQPIEDMRPQVQPDADIVQAVAAEIGSDSLFGVLVRIRRAVLRRDDPNYRLANMEQAFAI 662
Query: 427 ATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGLGSL 485
AT ++ +P L L +++++ + PVD D+ Q L +A +++ V PG G L
Sbjct: 663 ATALEGVPDLTLAQRWVYAMCPVDDRDN-GIQRLVHWAADHAAGNTVP-----PPGTGRL 716
Query: 486 RVAE 489
AE
Sbjct: 717 PAAE 720
>gi|347761752|ref|YP_004869313.1| RNA helicase [Gluconacetobacter xylinus NBRC 3288]
gi|347580722|dbj|BAK84943.1| RNA helicase [Gluconacetobacter xylinus NBRC 3288]
Length = 835
Score = 243 bits (620), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 159/424 (37%), Positives = 237/424 (55%), Gaps = 17/424 (4%)
Query: 72 ARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLI 131
AR R++ L GPTNSGK+H AL L + SG+ PLRLLA E + L V L
Sbjct: 326 ARALNRRITLVTGPTNSGKSHTALDALARAESGLALAPLRLLAHEFRESLTARGVPTSLA 385
Query: 132 TGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH 191
TG+ER +V G++H A TVEM + + D A+IDE QML RG ++T A++G A L
Sbjct: 386 TGEERIDVPGSRHLAATVEMCPLNNPVDVAIIDEAQMLTDPDRGAAWTAAIMGAPARHLF 445
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
+ G P +P++++I ++ GD V ER SPLV + S +Q D ++ FSR +
Sbjct: 446 ILGAPDCIPMVKRIAELCGDPVDEIRLERKSPLVAAERSV-SLHELQKHDALIAFSRREV 504
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
L+ + ++GK + ++VYG+L PE R +A RFN+ + D+L+A+DAIGMGLNL I R
Sbjct: 505 LDLRALLLAQGKRV-AVVYGALSPEVRRAEAQRFNNGDA--DILIATDAIGMGLNLTIRR 561
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLP-LLHKSLLEP 370
++F+ ++K+DG + RDL EVKQI GRAGRYG K G V L+ P +H L P
Sbjct: 562 VVFAALRKYDGNQTRDLNPQEVKQIGGRAGRYG-KHEQGVVAVLEGVGSPSFIHAMLAAP 620
Query: 371 SPMLES--AGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA--KLSENYFFANCEEVLKV 426
+E + P+ D++ + SL+G+L + NY AN E+ +
Sbjct: 621 PQPIEDMRPQVQPDADIVQAVAAEIGSDSLFGVLVRIRRAVLRRDDPNYRLANMEQAFAI 680
Query: 427 ATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGLGSL 485
AT ++ + L L +++++ + PVD D+ Q L +A +++ V PG GSL
Sbjct: 681 ATALEGVADLTLAQRWVYAMCPVDDRDN-GIQRLVHWAADHAAGNAVP-----PPGTGSL 734
Query: 486 RVAE 489
AE
Sbjct: 735 PPAE 738
>gi|296536910|ref|ZP_06898948.1| helicase domain protein, partial [Roseomonas cervicalis ATCC 49957]
gi|296262764|gb|EFH09351.1| helicase domain protein [Roseomonas cervicalis ATCC 49957]
Length = 505
Score = 243 bits (619), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 161/408 (39%), Positives = 238/408 (58%), Gaps = 15/408 (3%)
Query: 62 LTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL 121
L R + AR +R+ I+ GPTNSGK+H AL RL + SG+ PLRLLA E + L
Sbjct: 21 LDRYAAHFATARAMIRRFIIVTGPTNSGKSHTALDRLAQAESGLALAPLRLLAHEFREAL 80
Query: 122 NKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRA 181
V L TG+ER G+KH A TVEM S D A+IDE Q+L + RG ++T A
Sbjct: 81 ASRGVEAALSTGEERILAPGSKHLAATVEMCPFHSPVDVAIIDEAQLLHDRDRGAAWTAA 140
Query: 182 LLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGD 241
L+G+ A E+ + G P VP++++I Q+ GD+V+ + +R PL P+ ++ GD
Sbjct: 141 LMGVPAREVFVLGAPECVPMVKRIAQLCGDEVEEITLQRKGPLHASTKPV-PMGELKQGD 199
Query: 242 CIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI 301
+V FSR + L++A+ +RG+ + ++VYG+L PE R +A RF + E D++VA+DAI
Sbjct: 200 ALVAFSRRDVMDLREALVARGRKV-AVVYGALSPEVRRAEAARFRN--GEADIIVATDAI 256
Query: 302 GMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLP 361
GMGLNL I R++FST++KFDG E R+LT EVKQI GRAGRYG G V+ L P
Sbjct: 257 GMGLNLPIRRVVFSTLRKFDGEERRELTSQEVKQIGGRAGRYG-HHEGGVVSVLAGGGDP 315
Query: 362 LLHKSLLE--PSPMLE-SAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA--KLSENYF 416
+++LE P+P E + P+ D+I + SL+G+L K NY
Sbjct: 316 GFVQAMLEAPPAPPEELRPQVQPDADIIAAVAAEIGTDSLFGVLARIKRAVLRKDDPNYR 375
Query: 417 FANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFA 463
A+ + + +A+ ID + L L +++ + + PVD D+ G+T+ A
Sbjct: 376 LADLTQQMAIASAIDGVAGLSLADRWTYAMCPVDERDN----GVTRLA 419
>gi|339017941|ref|ZP_08644086.1| RNA helicase [Acetobacter tropicalis NBRC 101654]
gi|338752944|dbj|GAA07390.1| RNA helicase [Acetobacter tropicalis NBRC 101654]
Length = 786
Score = 242 bits (618), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 161/423 (38%), Positives = 238/423 (56%), Gaps = 17/423 (4%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+ AR R++ L GPTNSGK++ AL+ L + SG+ PLRLLA E + L V
Sbjct: 302 FRTARALNRRITLVTGPTNSGKSYTALNALAQAESGLALAPLRLLAHEFREALASRGVEA 361
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
L TG+ER V ++H A TVEM + D AVIDE QML RG ++T A++G A
Sbjct: 362 SLATGEERIIVPESRHLAATVEMCPFYNPVDVAVIDEAQMLFDTDRGAAWTAAIMGAPAR 421
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
L++ G P +P++++I ++ GD + S ER SPL P+ +++ TGD ++ FSR
Sbjct: 422 HLYVLGAPDCIPMVRRIAELCGDPLDEISLERKSPLRAAAQPV-KLTDLTTGDALIAFSR 480
Query: 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308
+ L+ A+ G+ + ++VYG+L PE R +A RFN ++ D+L+A+DAIGMGLNL+
Sbjct: 481 REVLDLRAALMQHGRRV-AVVYGALSPEVRRAEAQRFNSGAA--DILIATDAIGMGLNLS 537
Query: 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL 368
I R++F+ +KKFDG + RDLTV EVKQI GRAGRYG K VG V L P + L
Sbjct: 538 IKRVVFAALKKFDGKQTRDLTVQEVKQIGGRAGRYG-KHEVGTVAVLAGAGSPSFIRRQL 596
Query: 369 EPSPML-ESAGLF--PNFDLIYMYSRLHPDSSLYGILE--HFLENAKLSENYFFANCEEV 423
E L E F P+ D++ + SLYG+L H K NY A+ E+
Sbjct: 597 EADAELPEDLRPFVQPDADIVRAVATEIGSESLYGVLSRIHRAVLRKDDPNYRLADMEQA 656
Query: 424 LKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGL 482
+A+ ++ + L L ++ + + PVD D+ + L +A +++ R + PG
Sbjct: 657 FAIASALEGVDGLDLTTRWSYAMCPVDDRDN-GIRRLVGWAADHAAG-----RRVLPPGT 710
Query: 483 GSL 485
G L
Sbjct: 711 GRL 713
>gi|56478273|ref|YP_159862.1| hypothetical protein ebA4984 [Aromatoleum aromaticum EbN1]
gi|56314316|emb|CAI08961.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1]
Length = 703
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 143/397 (36%), Positives = 220/397 (55%), Gaps = 9/397 (2%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQER 136
R+ + +GPTNSGKTHQA+ L +++G+Y PLRLLA E +RL V+ L+TG+ER
Sbjct: 211 RRFVAILGPTNSGKTHQAMEALAQAATGVYLAPLRLLALENYERLADRGVAVSLVTGEER 270
Query: 137 EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDP 196
GA H A T+EM D + AVIDEIQML RG ++T A+ G A ++L G
Sbjct: 271 RLTPGATHVASTIEMLDTSRAVEVAVIDEIQMLEDLERGSAWTAAVCGAAAKTVYLLGAL 330
Query: 197 AAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKK 256
+A P ++ + + G +++V + R SPL +GS ++ GD ++ FSR +
Sbjct: 331 SARPAVEALAERLGCELEVTTLARKSPLEMAPRAVGSIGQLRRGDAVIAFSRRDVLNWAT 390
Query: 257 AIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFST 316
I + G + +I YG+L PE R QA RF D E D++VA+DAIGMGLNL ++R++FST
Sbjct: 391 NIAAAGFRVATI-YGNLSPEVRRAQAQRFRD--GEADIVVATDAIGMGLNLPVARVVFST 447
Query: 317 MKKFDGVELRDLTVPEV-KQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 375
KKFDG+ D+ P + QIAGRAGR+G G V D ++ + + P+ L
Sbjct: 448 AKKFDGIS-EDILAPWLTHQIAGRAGRFG-LHEAGLVAGFDDHTHRIISRLMRTPADPLS 505
Query: 376 SAGLF--PNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFF-ANCEEVLKVATVIDQ 432
+ G + P+ + + + +L +LE F N L++++F + E + A +D
Sbjct: 506 NRGFYVTPSLRHVKSIAAATGEHTLARLLELFSRNIDLTDDFFLPGDLSEQTERAQWLDS 565
Query: 433 LPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK 469
LPL L ++ + PV + +Q +A +K+
Sbjct: 566 LPLSLEHRFTLSLVPVSTRVETLNQAWQGWARALAKE 602
>gi|440784950|ref|ZP_20961987.1| ATP-dependent RNA helicase suv3 precursor [Clostridium pasteurianum
DSM 525]
gi|440218600|gb|ELP57819.1| ATP-dependent RNA helicase suv3 precursor [Clostridium pasteurianum
DSM 525]
Length = 585
Score = 241 bits (616), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 136/337 (40%), Positives = 196/337 (58%), Gaps = 12/337 (3%)
Query: 8 NRKASALGIPRILRDNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT 67
N+ + G +L ++ E + L S + V+I + ++F+ + P
Sbjct: 81 NKNDTKFGFEDVLEEDYEGY-LQS-------GIISVLITKHIPEIISEEFNRVFPSNPKD 132
Query: 68 WYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVS 127
Y AR+ RK LH+G TN+GKT+ A+ RL+ + GIY PLR+LA E +RLN V
Sbjct: 133 EYSAARRLKRKFYLHLGETNTGKTYNAMMRLKQCNKGIYLSPLRILALENYERLNSEGVK 192
Query: 128 CDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA 187
C LITG+E V+GA+H T+E D+ YD AVIDE+QM+ RG ++TRA+LGI
Sbjct: 193 CSLITGEEEIIVEGAQHICCTIEKLDIKEIYDVAVIDEVQMIDDDQRGAAWTRAILGIQC 252
Query: 188 NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFS 247
NE+H+CG A PL+ I++ D K++ Y R PL ++ ++ + + GD +V FS
Sbjct: 253 NEIHVCGAYNASPLLLDIIEDCNDKYKLKRYIRDIPL-KIDYRTFAYRDAEEGDALVAFS 311
Query: 248 RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307
+ + L + G SI+YG LPPE R +Q +F + E +L+ +DAIGMG+NL
Sbjct: 312 KKMVLNLAYYYSNMGIK-ASIIYGDLPPEVRKKQYEQF--INKETKILITTDAIGMGVNL 368
Query: 308 NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
I RI+F +KKFDG E+R L EVKQIAGRAGR G
Sbjct: 369 PIKRIVFMDIKKFDGNEMRYLKSQEVKQIAGRAGRKG 405
>gi|349699527|ref|ZP_08901156.1| RNA helicase [Gluconacetobacter europaeus LMG 18494]
Length = 815
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 157/420 (37%), Positives = 234/420 (55%), Gaps = 17/420 (4%)
Query: 72 ARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLI 131
AR R++ L GPTNSGK+H AL L + SG+ PLRLLA E + L V L
Sbjct: 308 ARALNRRITLVTGPTNSGKSHTALDALARAESGLALAPLRLLAHEFRESLTARGVPTSLA 367
Query: 132 TGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH 191
TG+ER +V G++H A TVEM + + D A+IDE QML RG ++T A++G A L
Sbjct: 368 TGEERIDVPGSRHLAATVEMCPLNNPVDVAIIDEAQMLTDPDRGAAWTAAIMGAPARHLF 427
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
+ G P +P++++I ++ GD V ER SPLV + S +Q D ++ FSR +
Sbjct: 428 ILGAPDCIPMVRRIAELCGDPVDEIRLERKSPLVAAERSV-SLHELQKHDALIAFSRREV 486
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
L+ + ++GK + ++VYG+L PE R +A RFND + D+L+A+DAIGMGLNL I R
Sbjct: 487 LDLRALLLAQGKRV-AVVYGALSPEVRRAEAQRFNDGDA--DILIATDAIGMGLNLTIRR 543
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLP-LLHKSLLEP 370
++F+ ++K+DG + RDL EVKQI GRAGRYG K G V L+ P +H L P
Sbjct: 544 VVFAALRKYDGNQTRDLNPQEVKQIGGRAGRYG-KHEQGVVAVLEGVGSPSFIHAMLAAP 602
Query: 371 SPMLES--AGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA--KLSENYFFANCEEVLKV 426
+E + P+ D++ + SL+G+L + NY AN E+ +
Sbjct: 603 PQPIEDMRPQVQPDADIVQAVAAEIGSDSLFGVLVRIRRAVLRRDDPNYRLANMEQAFAI 662
Query: 427 ATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGLGSL 485
AT ++ + L L +++++ + PVD D+ Q L +A +++ V PG G L
Sbjct: 663 ATALEGVADLTLAQRWVYAMCPVDDRDN-GIQRLVHWAADHAAGNAVP-----PPGTGRL 716
>gi|349688090|ref|ZP_08899232.1| RNA helicase [Gluconacetobacter oboediens 174Bp2]
Length = 815
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 157/420 (37%), Positives = 234/420 (55%), Gaps = 17/420 (4%)
Query: 72 ARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLI 131
AR R++ L GPTNSGK+H AL L + SG+ PLRLLA E + L V L
Sbjct: 308 ARALNRRITLVTGPTNSGKSHTALDALARAESGLALAPLRLLAHEFRESLTARGVPTSLA 367
Query: 132 TGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH 191
TG+ER +V G++H A TVEM + + D A+IDE QML RG ++T A++G A L
Sbjct: 368 TGEERIDVPGSRHLAATVEMCPLNNPVDVAIIDEAQMLTDPDRGAAWTAAIMGAPARHLF 427
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
+ G P +P++++I ++ GD V ER SPLV + S +Q D ++ FSR +
Sbjct: 428 ILGAPDCIPMVRRIAELCGDPVDEIRLERKSPLVAAERSV-SLHELQKHDALIAFSRREV 486
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
L+ + ++GK + ++VYG+L PE R +A RFND + D+L+A+DAIGMGLNL I R
Sbjct: 487 LDLRALLLAQGKRV-AVVYGALSPEVRRAEAQRFNDGDA--DILIATDAIGMGLNLTIRR 543
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLP-LLHKSLLEP 370
++F+ ++K+DG + RDL EVKQI GRAGRYG K G V L+ P +H L P
Sbjct: 544 VVFAALRKYDGNQTRDLNPQEVKQIGGRAGRYG-KHEQGVVAVLEGVGSPSFIHAMLAAP 602
Query: 371 SPMLES--AGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA--KLSENYFFANCEEVLKV 426
+E + P+ D++ + SL+G+L + NY AN E+ +
Sbjct: 603 PQPIEDMRPQVQPDADIVQAVAAEIGSDSLFGVLVRIRRAVLRRDDPNYRLANMEQAFAI 662
Query: 427 ATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGLGSL 485
AT ++ + L L +++++ + PVD D+ Q L +A +++ V PG G L
Sbjct: 663 ATALEGVADLTLAQRWVYAMCPVDDRDN-GIQRLVHWAADHAAGNAVP-----PPGTGRL 716
>gi|399886926|ref|ZP_10772803.1| mitochondrial ATP-dependent RNA helicase suv3 precursor
[Clostridium arbusti SL206]
Length = 585
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 133/322 (41%), Positives = 195/322 (60%), Gaps = 6/322 (1%)
Query: 65 PHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKA 124
P Y AR+ RK LH+G TN+GKT+ A+ RL+ + GIY PLR+LA E +RLNK
Sbjct: 130 PKDEYRDARRITRKFYLHLGETNTGKTYNAMMRLKECNKGIYLSPLRILALENYERLNKE 189
Query: 125 NVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLG 184
V C+L+TG+E V+GA H T+E D+ Y+ AVIDE+QM+ RG ++TRA+L
Sbjct: 190 GVKCNLMTGEEEIIVEGADHICCTIEKLDISKYYEVAVIDEVQMIDDDQRGAAWTRAILA 249
Query: 185 ICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIV 244
+ NE+H+CG A L+ I++ D+ K + Y+R PL ++ ++ +++ GD +V
Sbjct: 250 LNCNEIHVCGALNAKQLLLDIIEDCNDEYKFKEYKRDIPL-QMDYKTFAYRHVEDGDALV 308
Query: 245 TFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMG 304
FS+ + L S G SI+YG LP E R +Q +F AS E +L+ +DAIGMG
Sbjct: 309 VFSKKMVLNLAYYFSSSGIK-ASIIYGDLPAEVRKKQYKQF--ASGETKILITTDAIGMG 365
Query: 305 LNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLH 364
+NL I RI+F +KKFDG E+R L EVKQIAGRAGR G + VG V ++ +
Sbjct: 366 VNLPIKRIVFMDIKKFDGNEVRYLNSQEVKQIAGRAGRKGI-YDVGYVATYNNVQ-DYIR 423
Query: 365 KSLLEPSPMLESAGLFPNFDLI 386
++L +LE A + P+ +++
Sbjct: 424 ENLEVEDKILEQAVVGPSEEIL 445
>gi|358635252|dbj|BAL22549.1| hypothetical protein AZKH_0203 [Azoarcus sp. KH32C]
Length = 685
Score = 241 bits (615), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 148/397 (37%), Positives = 218/397 (54%), Gaps = 9/397 (2%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQER 136
R+ I +GPTNSGKTH A+ L + SG+Y PLRLLA E +RL V+ LITG+ER
Sbjct: 190 RRFIAILGPTNSGKTHAAMEALAKAESGVYLAPLRLLALENYERLLDRGVAVSLITGEER 249
Query: 137 EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDP 196
GA H A T+EM + + AVIDEIQML RG ++T A+ G A + L G
Sbjct: 250 RLTPGATHVASTIEMLNTARPVEVAVIDEIQMLEDLERGSAWTAAVCGAAAKTVFLLGAL 309
Query: 197 AAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKK 256
+A P I+ + + G +++V++ ER SPL +GS ++ GD ++ FSR +
Sbjct: 310 SARPAIEALAERLGCELEVRTLERKSPLEMAPREVGSIGQLKRGDAVIAFSRRDVLNWAT 369
Query: 257 AIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFST 316
I G + +I YG+L PE R QA RF D E D++VA+DAIGMGLNL ++R++FST
Sbjct: 370 NIAEAGFRVATI-YGNLSPEVRRAQAQRFRD--GEADIVVATDAIGMGLNLPVARVVFST 426
Query: 317 MKKFDGVELRDLTVPEV-KQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 375
KKFDG+ D+ P + QIAGRAGR+G G V D ++ + + P+ L
Sbjct: 427 AKKFDGIS-EDILAPWLTHQIAGRAGRFGI-HDAGLVAGFDEHTHRIIGRLMKTPADPLS 484
Query: 376 SAGLF--PNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFF-ANCEEVLKVATVIDQ 432
+ G + P+ + S + L +LE F N L++++F + E ++ A +D
Sbjct: 485 NRGFYVTPSLHHVKSISAATGERGLARLLELFSRNIDLTDDFFLPGDLTEQIERARWLDT 544
Query: 433 LPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK 469
LPL L ++ + PV + +Q +A SK+
Sbjct: 545 LPLSLEHRFTLSLVPVSTRVESLNQAWQTWARALSKE 581
>gi|332525139|ref|ZP_08401316.1| helicase domain-containing protein [Rubrivivax benzoatilyticus JA2]
gi|332108425|gb|EGJ09649.1| helicase domain-containing protein [Rubrivivax benzoatilyticus JA2]
Length = 752
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 156/412 (37%), Positives = 235/412 (57%), Gaps = 17/412 (4%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+P AR + R V L+VGP NSGKTH A RL + G Y PLRLLA E R+ V+C
Sbjct: 266 FPKARAQQRTVTLYVGPPNSGKTHAAFERLCQARDGAYLAPLRLLALEGRDRMVARGVAC 325
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
L+TG+E +GA + T+EM + + AV+DE QM+ +RG+++T+A++ + A+
Sbjct: 326 SLLTGEENVPAEGAHFVSSTIEMVSTNNPVEVAVVDEAQMIFDASRGWAWTQAIVAVPAS 385
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
EL + AVP I+ +L V G+ V+ +ER + L P+ + +Q GD +V FSR
Sbjct: 386 ELIIICSEYAVPAIEILLGVCGERCTVRRFERKQHVELLPRPV-ALDALQAGDAVVAFSR 444
Query: 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308
+ L+ AI + G+ + S++YG+LPPE R R+A RF AS E +LVA+DAIGMGLNL
Sbjct: 445 RDVLTLRDAIAANGRPV-SVIYGALPPEVRRREAERF--ASGESQILVATDAIGMGLNLP 501
Query: 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL 368
I R++FST+ KFDGV R L EV QIAGRAGR+G G LD + P ++L
Sbjct: 502 IRRVLFSTLSKFDGVGDRLLDESEVHQIAGRAGRFGFH-EEGFAGVLDLAE-PTAARTLK 559
Query: 369 E------PSPMLESAGLFPN-FDLIYMYSRLHPDSSLYGILEHFLENAKLSENYF-FANC 420
E +P A + PN + + + RL + L +L F++ KL + +F A
Sbjct: 560 ELLHRQPKAPRHFKAPVAPNGWHVRTIAERLQ-ATRLREVLGVFVDRLKLDDAHFAVAEL 618
Query: 421 EEVLKVATVIDQL--PLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKG 470
+ +L +A +D L L ++++ +PVD ++ + Q +A ++K G
Sbjct: 619 DAMLALAEQLDHAAGALPLAARFVYAQAPVDSRNEDTVQEYLDWARGHAKGG 670
>gi|427400048|ref|ZP_18891286.1| hypothetical protein HMPREF9710_00882 [Massilia timonae CCUG 45783]
gi|425720788|gb|EKU83703.1| hypothetical protein HMPREF9710_00882 [Massilia timonae CCUG 45783]
Length = 671
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 142/415 (34%), Positives = 231/415 (55%), Gaps = 12/415 (2%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN--- 125
+ +A + RK I +GPTNSGKTH+A+ L + SG+Y PLRLLA E +RL A
Sbjct: 174 FEVASRMQRKFIALLGPTNSGKTHRAMEALAKAGSGVYLAPLRLLALENYERLQAARPHG 233
Query: 126 --VSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALL 183
+ LITG+ER +GA H A TVEM D + + AVIDEIQML + RG ++T A++
Sbjct: 234 EPIKVSLITGEERRLEEGATHVASTVEMLDTKTPVEVAVIDEIQMLADRDRGAAWTTAVV 293
Query: 184 GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCI 243
G AN ++L G P A I+ + + ++V +R+ PL + SN++ GD +
Sbjct: 294 GAPANVVYLVGAPEARRAIEALAERLEVPLEVHVLKRMGPLSMEPSSVRKLSNLRRGDAV 353
Query: 244 VTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM 303
+ FSR + + I +G + + VYG+L PE R QA RF + + D++V +DA+ M
Sbjct: 354 ICFSRREVLMWRDMITEKGLSVAT-VYGNLSPEVRRAQAERFREGQA--DIVVGTDALAM 410
Query: 304 GLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLL 363
GLN+ I+RI+ +T K++G E ++ KQIAGRAGRYG G V D + ++
Sbjct: 411 GLNMPIARIVMTTTVKYNGYEEEEIPAALAKQIAGRAGRYGV-HEEGFVAGYDDDTHQVM 469
Query: 364 HKSLLEPSPMLESAG--LFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFAN-C 420
+ E P + + G + P+ + ++ + + ++SL +L+ F+ N + + +F+
Sbjct: 470 RALMKEKIPPVAATGFAVAPSLEQLHRIAAVTGETSLVKLLKRFVHNIDVPDGFFYPRIT 529
Query: 421 EEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLR 475
EE + A +D LPL + EK++ + P+ + +A + +KK +V+L+
Sbjct: 530 EEQNERAEWLDTLPLSVAEKFMLSLVPISSRVPVLQSAWEHWALSLAKKKVVKLQ 584
>gi|46203070|ref|ZP_00052136.2| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
magnetotacticum MS-1]
Length = 465
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 147/389 (37%), Positives = 225/389 (57%), Gaps = 16/389 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGA 142
+GPTNSGKT+ AL L ++S+G Y PLRLLA E + L + + ++TG+E
Sbjct: 1 MGPTNSGKTYAALQILTAASTGAYLAPLRLLALENYEALRERGLRAGMVTGEEVLGEPDP 60
Query: 143 KHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLI 202
H A T+E AD+ D AVIDEIQML RG+++T AL G+ A + +CG A+ +
Sbjct: 61 THTARTIETADLTRPIDVAVIDEIQMLSDPDRGWAWTNALFGVPAKTVIVCGSDDALSSV 120
Query: 203 QQILQVTGDDVKVQSYERLSPLVPLN--VPLGSFSNIQTGDCIVTFSRHAIYRLKKAIES 260
++ + + ++V ++ER SPLV L+ VPL ++ GD +V FSR A++ ++ + +
Sbjct: 121 RRAAEAANESLEVITFERKSPLVLLDEAVPL---EKVEPGDAVVAFSRRAVHENREILVA 177
Query: 261 RGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK 319
RG H + +YG+L PE R +A RF S E +VLV +DAIGMGLNL + RI+FS ++K
Sbjct: 178 RG-HRVATIYGALSPEVRRAEAARFR--SGEANVLVTTDAIGMGLNLGPLKRIVFSAVRK 234
Query: 320 FDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAG- 378
+DGV R LT E++QIAGRAGRYG VG V + + + + L +P +A
Sbjct: 235 WDGVAERALTNSEIRQIAGRAGRYG-HHEVGYVAATEETAIEPI-RVALAGAPTAPAADT 292
Query: 379 ---LFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANC-EEVLKVATVIDQLP 434
+ P+ I S +SLY ++ HF + + F + EEVL +A ID+
Sbjct: 293 RFYVRPDLTAIRSVSEEMRTNSLYEVMTHFARATFYAGSPFQPSALEEVLDIARTIDRAR 352
Query: 435 LRLHEKYLFCISPVDMNDDISSQGLTQFA 463
L + EK+ F + P++ D+I+ L +++
Sbjct: 353 LPIEEKFAFSVCPINRRDEIAMGMLERWS 381
>gi|340777408|ref|ZP_08697351.1| RNA helicase [Acetobacter aceti NBRC 14818]
Length = 812
Score = 240 bits (613), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 158/421 (37%), Positives = 240/421 (57%), Gaps = 19/421 (4%)
Query: 72 ARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLI 131
AR R++ L GPTNSGK+H AL L + SG+ PLRLLA E + L V L
Sbjct: 335 ARALDRRITLVTGPTNSGKSHTALDALAKAESGLALAPLRLLAHEFREALAARGVEASLS 394
Query: 132 TGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH 191
TG+ER G+KH A TVEM + D A+IDE QML RG ++T A++G A L+
Sbjct: 395 TGEERIVAHGSKHLAATVEMCPFFNPVDVAIIDEAQMLFDPDRGAAWTAAIMGAPARHLY 454
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
+ G P +P++++I ++ GD + S +R SPL + P+ + +++GD ++ FSR +
Sbjct: 455 ILGAPECIPMVRRIAELCGDPIDEISLQRKSPLKAASAPV-RLNELKSGDALIAFSRREV 513
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
L+ A+ RG+ + ++VYG+L PE R +A RFN ++ D+L+A+DAIGMGLNL+I R
Sbjct: 514 LDLRAALMERGRRV-AVVYGALSPEVRRAEAQRFNSGAA--DILIATDAIGMGLNLSIRR 570
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL--E 369
++F+ ++KFDG + RDLT+ EVKQI GRAGRYG K G V L P + L +
Sbjct: 571 VVFAALRKFDGRQTRDLTIQEVKQIGGRAGRYG-KHEEGIVAVLADAGSPRFIRDHLNAD 629
Query: 370 PSPMLESAGLF-PNFDLIYMYSRLHPDSSLYGILEHFLENAKLSE---NYFFANCEEVLK 425
P P E L P+ D++ + SLYG+L + A L NY ++ E+
Sbjct: 630 PVPPDELRPLVQPDADIVRAIATEIGSDSLYGVLAR-IRRAVLRHDDPNYRLSDMEQPFA 688
Query: 426 VATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGLGS 484
+A+ ++ + L L +++ + + PVD D+ S+ L +A +++ I PG G
Sbjct: 689 IASALEGVEGLDLTQRWTYAMCPVDDRDNGISR-LVGWAADHAAGA-----RIPPPGTGR 742
Query: 485 L 485
L
Sbjct: 743 L 743
>gi|300855087|ref|YP_003780071.1| ATP-dependent RNA helicase [Clostridium ljungdahlii DSM 13528]
gi|300435202|gb|ADK14969.1| predicted ATP-dependent RNA helicase [Clostridium ljungdahlii DSM
13528]
Length = 585
Score = 240 bits (612), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 137/355 (38%), Positives = 210/355 (59%), Gaps = 15/355 (4%)
Query: 8 NRKASA-LGIPRILRDNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPH 66
N+K + I+++N F LNS + V+ +++ ++F+ T P
Sbjct: 80 NKKNNTHFAFYEIIKENYNAF-LNS-------GIMTVLTKNHIPKLIAEEFEKTFPDNPK 131
Query: 67 TWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANV 126
Y R RK +H+G TN+GKT+ A+ RL+++ GIY PLR+LA E ++LNK +
Sbjct: 132 DEYIETRHMKRKFYIHLGDTNTGKTYNAVERLKTAKKGIYLSPLRILALENFEKLNKEGI 191
Query: 127 SCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC 186
CDL+TG+E G+ H + T+E ++ YD AVIDEIQM+ K RG +++RALLG+
Sbjct: 192 ICDLLTGEEEVLKIGSTHISCTIEKLNLKEHYDIAVIDEIQMISDKQRGMAWSRALLGLK 251
Query: 187 ANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF 246
+E+H+CG A +I+ I+ D+ +++ Y+R PL N ++ +I+ GD +V F
Sbjct: 252 CDEIHICGALNAKDIIKTIINDCEDEYEIKEYKRSIPLEVENKKF-NYDDIKEGDAVVVF 310
Query: 247 SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 306
S+ + + + S+G S++YG LPPE R Q +F + E VLV +DAIGMG+N
Sbjct: 311 SKKRVLEIAQRYSSKGIK-ASMIYGDLPPEVRKMQYEQF--TNKETKVLVTTDAIGMGVN 367
Query: 307 LNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL-DSEDL 360
L I RIIF +KKFDG E+R+LT EVKQ++GRAGR G + +G V D++D
Sbjct: 368 LPIRRIIFINIKKFDGEEVRELTSQEVKQVSGRAGRIGI-YDIGYVASAGDTQDF 421
>gi|374289652|ref|YP_005036737.1| putative helicase [Bacteriovorax marinus SJ]
gi|301168193|emb|CBW27782.1| putative helicase [Bacteriovorax marinus SJ]
Length = 878
Score = 240 bits (612), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/287 (45%), Positives = 185/287 (64%), Gaps = 11/287 (3%)
Query: 72 ARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLI 131
AR R +I H+GPTNSGKT+ A+ L + +G Y PLRLLA E+ LN L+
Sbjct: 336 ARDIKRTIIYHMGPTNSGKTYHAIEALSKAKTGCYLAPLRLLAGELYDTLNSKGAKTTLL 395
Query: 132 TGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH 191
TG+E E +GA H + T+EMA +DC VIDEIQM+ K RG+++TRAL+ I + E+H
Sbjct: 396 TGEEVIENEGATHFSSTIEMARFGEVFDCCVIDEIQMITDKQRGWAWTRALVNIFSPEIH 455
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL--VPLNVPLGSFSNIQTGDCIVTFSRH 249
+CGDP+A L++QI + GD++ V+ Y R++ L P + +G ++ D ++ FSR
Sbjct: 456 VCGDPSAYELVKQIADLCGDELVVKEYTRMTELNVQPKPIVVGQ---LEKNDALIVFSRR 512
Query: 250 AIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNI 309
R K+ +E G + SIVYG L PE R QA +F++ E D++V++DAI MG+NL +
Sbjct: 513 NALRFKRDLEKVGFKV-SIVYGRLSPEVRREQARKFDEG--ETDIIVSTDAISMGMNLPV 569
Query: 310 SRIIFSTMKKF-DGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 355
RI+FST+ KF DG E ++ E+KQIAGRAGR+G +FP G VT L
Sbjct: 570 RRIVFSTLSKFIDGHEFI-ISQSEIKQIAGRAGRFG-RFPTGFVTTL 614
>gi|395762745|ref|ZP_10443414.1| hypothetical protein JPAM2_13466 [Janthinobacterium lividum PAMC
25724]
Length = 662
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 148/416 (35%), Positives = 230/416 (55%), Gaps = 12/416 (2%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN--- 125
+ +AR+ R+ I +GPTNSGKTH+A+ L + SGIY PLRLLA E +RL +A
Sbjct: 180 FEMARRLPRRFIALLGPTNSGKTHRAIEALVKAKSGIYLAPLRLLALENYERLQEAAPHG 239
Query: 126 --VSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALL 183
++ +LITG+ER VDGA H A TVEM D + + AVIDEIQMLG RG ++T A+
Sbjct: 240 KPLAVNLITGEERRVVDGATHVASTVEMLDTKTVVEVAVIDEIQMLGDPDRGAAWTAAVC 299
Query: 184 GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCI 243
G A+ ++L G P A I+ + + ++V +R++PL + N++ GD +
Sbjct: 300 GAPAHTVYLVGAPEARRAIEALAERLDCPLEVHVLKRMAPLSMEPTAVRKVRNLRRGDAV 359
Query: 244 VTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM 303
+ FSR + + I G + + VYG+L PE R QA RF D ++ DV+V +DA+ M
Sbjct: 360 IAFSRREVLMWRDMITETGLSVAT-VYGNLSPEVRRAQAQRFRDGTA--DVVVGTDALAM 416
Query: 304 GLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLL 363
GLN+ I+RI+ +T K++G E +++ +QIAGRAGRYG G V D+E ++
Sbjct: 417 GLNMPIARIVMTTCVKYNGREEEEISAALARQIAGRAGRYGV-HEEGLVAGYDNETHEVM 475
Query: 364 HKSLLEPSPMLESAG--LFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFAN-C 420
L E L ++G + P+ + ++ S + + SL +L F+ N + + +FF
Sbjct: 476 RALLKEKLHPLNTSGFAVAPSLEHLHRISSVTGELSLSKLLRRFIHNIDVPDGFFFPRIT 535
Query: 421 EEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLRE 476
EE + A +D LPL + +K+ + P+ +A N S+ LR+
Sbjct: 536 EEQKERAVWLDTLPLSVADKFALSLVPISSKVPSLQTAWEHWAKNLSQGKASTLRQ 591
>gi|401885058|gb|EJT49189.1| RNA helicase like protein [Trichosporon asahii var. asahii CBS
2479]
Length = 772
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 157/437 (35%), Positives = 225/437 (51%), Gaps = 29/437 (6%)
Query: 57 FDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWE 116
TD++ + AR R LH+GPTNSGKT+ AL L + +G+Y GPLRLLA E
Sbjct: 194 LQITDISNVAQTHVAARSMNRNFHLHMGPTNSGKTYSALKALSKAKTGVYAGPLRLLAHE 253
Query: 117 VAKRLNKANV--------SCDLITGQEREEV-DGAKHRAVTVEMADVV-----SDYDCAV 162
V +R+N V +C+L+TG+ER V A + TVEM + +D V
Sbjct: 254 VWERINLGTVGGMDGEGRACNLLTGEERRLVAQDAGLMSCTVEMMPLQGFMGGEPWDVVV 313
Query: 163 IDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQ-VTGDDVKVQSYERL 221
IDEIQMLG RG ++ A++G+ A E+HLCGD L+ +++ GD + V Y RL
Sbjct: 314 IDEIQMLGDSERGAAWANAVMGVAAKEIHLCGDETTEKLLHEMIAGFKGDTLTVHKYSRL 373
Query: 222 SPLVPLNVPLGS-FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 280
+PL + L S +Q GDC+VTFSR ++ LK IE + ++VYG+LPPETR
Sbjct: 374 TPLKIADKSLHSDMKKVQAGDCVVTFSRSNVFALKNQIERQLGTKAAVVYGALPPETRAE 433
Query: 281 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 340
QA FN+ ++ VLVASDA+GMGLNL I+RIIF T+ K++G G
Sbjct: 434 QARDFNEGRAQ--VLVASDAVGMGLNLKINRIIFETLWKWNGSRRCPFDTATTGDAPGDT 491
Query: 341 GRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHP-DSSLY 399
G G VT L +D LL L P ++ A + P + + L P +S
Sbjct: 492 G--------GTVTTLHEDDFALLKSLLGRTLPSVKRAVIEPPSEALTALQPLLPAKTSFE 543
Query: 400 GILEHFLENAKLSENYFFANCEEVLKVATVIDQLP--LRLHEKYLFCISPVDMNDDISSQ 457
++EHF AKL A+ +A +++ L L E L +P+ D+ + +
Sbjct: 544 SLIEHFWALAKLPPRTVLASSTSKTTIAPILEPFRNILTLSELQLLANAPLPARDEKTVR 603
Query: 458 GLTQFATNYSKKGIVQL 474
+ Y+K+ V L
Sbjct: 604 FFSTMVWQYAKEYHVDL 620
>gi|187779986|ref|ZP_02996459.1| hypothetical protein CLOSPO_03582 [Clostridium sporogenes ATCC
15579]
gi|187773611|gb|EDU37413.1| helicase C-terminal domain protein [Clostridium sporogenes ATCC
15579]
Length = 588
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 145/395 (36%), Positives = 222/395 (56%), Gaps = 27/395 (6%)
Query: 41 VDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLES 100
+ V+I + K+FD P Y R RK LH+G TN+GKT+ ++ RL+
Sbjct: 106 ISVLITRHIPTMIFKEFDRIFPKNPKDEYREVRYMNRKFYLHLGETNTGKTYNSMERLKE 165
Query: 101 SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDC 160
S GIY PLR+LA E ++LNK V CDLITG+E + G+KH T+E D+ +YD
Sbjct: 166 SKKGIYLSPLRILALENFEKLNKEGVVCDLITGEEEIKKKGSKHICCTIEKLDINEEYDV 225
Query: 161 AVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 220
A+IDEIQM+ RG ++TRA+L + E+H+CG LI I++ GD+ +++ Y R
Sbjct: 226 AIIDEIQMIDDDQRGSAWTRAILALKCKEIHVCGALNTKELIINIIEDCGDEYELKEYFR 285
Query: 221 LSPLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 278
+PL + +F +I+ GD +VTFS+ + +L G S++YG+LPPE R
Sbjct: 286 ---NIPLKIEEEAFRLKDIKKGDALVTFSKKKVLQLADYYGDLGIK-TSVIYGNLPPEVR 341
Query: 279 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 338
+Q +F S + ++L+ +DAIGMG+NL I RIIF ++KFDG ++R LT EVKQI G
Sbjct: 342 RKQYEQF--ISKDSNILITTDAIGMGVNLPIRRIIFMDIRKFDGNDMRYLTSQEVKQIGG 399
Query: 339 RAGRYGSKFPVGEVTCL-DSEDL---------PLLHKSLLEPSPMLESAGLFPNFDLIYM 388
RAGR+G + +G + ++++ ++++++EPS + P + + +
Sbjct: 400 RAGRFGI-YDIGYIASYGNTQNFVKEMIEVYDRKIYEAVIEPSEAILDVKSLPLREKLAL 458
Query: 389 YSRLHPDSSLY---GILEHFL-----ENAKLSENY 415
+S S LY I E L +N KL E Y
Sbjct: 459 WSTREEKSLLYRKMDIGEKILVLDSIKNYKLPEKY 493
>gi|374998481|ref|YP_004973980.1| putative helicase [Azospirillum lipoferum 4B]
gi|357425906|emb|CBS88805.1| putative helicase [Azospirillum lipoferum 4B]
Length = 762
Score = 239 bits (609), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 139/403 (34%), Positives = 229/403 (56%), Gaps = 8/403 (1%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+ AR +RK+ L+VGPTNSGKTH A+ RL + SG Y PLRLLA E + L C
Sbjct: 204 FATARAMIRKLRLYVGPTNSGKTHAAMDRLAEAESGCYLAPLRLLALEGQEALETRGRPC 263
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
L+TG+ER+ GA + T+EM + + VIDEIQM+G RG+++T+A+ G+ A
Sbjct: 264 SLVTGEERDVRPGAAFTSSTIEMVNTSKVWGACVIDEIQMIGDPDRGWAWTQAVAGVAAP 323
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
E+ + G A+P ++++ G++++V + R SPL + ++ GD ++ FSR
Sbjct: 324 EILMTGSADAIPYVKRLADAMGEELEVIEFTRKSPLR-VQEERVKLEEVKPGDALIAFSR 382
Query: 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308
+ L+ + R H +++YG+L PE R +A RF + ++ DVLVA+DAIGMGLNL
Sbjct: 383 KDVMALRHDLLGR-NHNVAVIYGALSPEVRRAEARRFREGTA--DVLVATDAIGMGLNLP 439
Query: 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL 368
++R++ ST +K+DG E R+LT E++QI GRAGR+G G V LD E++ + ++L
Sbjct: 440 VARVVLSTTRKYDGREERELTASEIRQIGGRAGRFG-MHEEGRVAVLDGENINPVRRALT 498
Query: 369 EP--SPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHF-LENAKLSENYFFANCEEVLK 425
P P + + PN + ++ SL +L E + ++ + + E+ ++
Sbjct: 499 SPPVPPEDPRSWISPNLSHVEAIAQELDTDSLAKVLRTAGQELLRANQTFRMTDLEQRIQ 558
Query: 426 VATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
A+ +D+ L L ++ + P+D D + + L +A N +
Sbjct: 559 AASAVDRAKLPLAQRDMLARCPIDTRDQNNLRLLGGWAVNQGR 601
>gi|288960401|ref|YP_003450741.1| hypothetical protein AZL_a06660 [Azospirillum sp. B510]
gi|288912709|dbj|BAI74197.1| hypothetical protein AZL_a06660 [Azospirillum sp. B510]
Length = 758
Score = 238 bits (608), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 140/403 (34%), Positives = 227/403 (56%), Gaps = 8/403 (1%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+ AR +RK+ L VGPTNSGKTH A+ RL + SG Y PLRLLA E + L C
Sbjct: 204 FTTARAMIRKLRLFVGPTNSGKTHAAMDRLAEAESGCYLAPLRLLALEGQEALETRGRPC 263
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
L+TG+ER+ GA + T+EM + + VIDEIQM+G RG+++T+A+ G+ A
Sbjct: 264 SLVTGEERDVRPGASFTSSTIEMVNTSRIWGACVIDEIQMIGDPDRGWAWTQAVAGVAAP 323
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
E+ + G A+P ++++ G++++V + R SPL + ++TGD ++ FSR
Sbjct: 324 EILMTGSADAIPYVKRLADAMGEELEVVEFTRKSPLR-VQEERVKLDEVKTGDALIAFSR 382
Query: 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308
+ L+ + R H +++YG+L PE R +A RF + ++ DVLVA+DAIGMGLNL
Sbjct: 383 KDVMALRHDLLGR-NHNVAVIYGALSPEVRRAEARRFREGTA--DVLVATDAIGMGLNLP 439
Query: 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL 368
++R++ ST +K+DG E R+LT E++QI GRAGR+G G V LD E + + ++L
Sbjct: 440 VARVVLSTTRKYDGREERELTASEIRQIGGRAGRFG-MHEEGRVAVLDGESINPVRRALT 498
Query: 369 EP--SPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHF-LENAKLSENYFFANCEEVLK 425
P P + + PN + ++ SL +L E + ++ + + E+ ++
Sbjct: 499 SPPVPPEDPRSWISPNLSHVEAIAQELDTDSLAKVLRTAGQELLRANQTFRMTDLEQRIQ 558
Query: 426 VATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSK 468
A +D+ L L ++ + P+D D + + L +A N +
Sbjct: 559 AAAAVDRAKLPLAQRDMLARCPIDTRDQNNLRLLGGWAVNQGR 601
>gi|34497544|ref|NP_901759.1| ATP-dependent RNA helicase [Chromobacterium violaceum ATCC 12472]
gi|34331003|gb|AAQ59761.2| probable ATP-dependent RNA helicase [Chromobacterium violaceum ATCC
12472]
Length = 562
Score = 238 bits (608), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 159/452 (35%), Positives = 235/452 (51%), Gaps = 16/452 (3%)
Query: 46 RSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGI 105
R + K D +L+R + A R I +GPTNSGKTH A+ L+ + SG+
Sbjct: 51 RQSADKAAAKTRDAVNLSRYPESFATAYAMQRHFIAVLGPTNSGKTHAAMEHLQKAKSGV 110
Query: 106 YCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDE 165
Y PLRLLA E RL +A V+ LITG++R+ A H A TVEM + + AVIDE
Sbjct: 111 YLAPLRLLALENYTRLQQAGVAVSLITGEQRKLHPDATHVASTVEMLNPERQVEVAVIDE 170
Query: 166 IQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV 225
IQ+L RG ++T A+ G+ A ++L G P + I+ ++ G ++V++ ER + L
Sbjct: 171 IQLLDDPDRGAAWTAAVCGVPAQTIYLVGAPESREAIESLVARVGGTLEVRTLERKTALQ 230
Query: 226 PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRF 285
PL S N++ GD ++ FSR + + + +G + S +YG+L PE R QA RF
Sbjct: 231 MDKAPLLSLKNLKPGDVLIAFSRREVLNWRDKVIEQGLSV-SAIYGNLSPEVRQAQAERF 289
Query: 286 NDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS 345
+ E V+VA+DAIGMGLN RIIF+T K+DG + P KQIAGRAGR+G
Sbjct: 290 --VAGETQVVVATDAIGMGLNTPARRIIFTTASKWDGYAEGVIAAPLAKQIAGRAGRFG- 346
Query: 346 KFPVGEVTCLDSEDLPLLHKS---LLEPSP-MLESAGLF--PNFDLIYMYSRLHPDSSLY 399
K G V D L HK+ LL P L + G F P+ + S+ + L
Sbjct: 347 KHETGYVAGFDG----LTHKTIGALLRQKPEALPNNGFFVAPSLKYLEAISQATGEIRLK 402
Query: 400 GILEHFLENAKLSENYFF-ANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQG 458
+L F ++ + + +F AN + ++ A +D LPL L ++Y F + P+ +
Sbjct: 403 QLLSLFTKHINVHDEFFLPANLSDQMEKAEWLDALPLSLADRYTFSLCPISTKIPMLENA 462
Query: 459 LTQFATNYSK-KGIVQLREIFTPGLGSLRVAE 489
L +A ++ K LR + T G L+ E
Sbjct: 463 LHDWAEQRARGKAAPLLRMMGTGGRNELQYLE 494
>gi|150017290|ref|YP_001309544.1| helicase domain-containing protein [Clostridium beijerinckii NCIMB
8052]
gi|149903755|gb|ABR34588.1| helicase domain protein [Clostridium beijerinckii NCIMB 8052]
Length = 585
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 125/303 (41%), Positives = 188/303 (62%), Gaps = 9/303 (2%)
Query: 55 KKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLA 114
K+F+ + P Y AR RK +H+G TN+GKT+ AL RL+S+ G+Y PLR+LA
Sbjct: 120 KEFEENFPSNPKDEYRQARSMKRKFYIHLGDTNTGKTYNALERLKSAKKGVYLSPLRILA 179
Query: 115 WEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
E ++LN+ V CDL+TG+E G+ H + T+E ++ YD AVIDEIQM+ R
Sbjct: 180 LENFEKLNREGVICDLLTGEEEIINVGSTHTSCTIEKVNLKEHYDIAVIDEIQMISDPFR 239
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G ++++ALLG+ +E+H+CG A +++ I+ D+ +++ Y R +PL V +F
Sbjct: 240 GMAWSKALLGLQCDEIHICGAANAKYILETIISDCKDEYEIREYTR---AIPLEVEYKNF 296
Query: 235 S--NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEF 292
S ++Q GD +V FS+ + + + SR SI+YG LPPE R Q +F + E
Sbjct: 297 SYNDVQEGDAVVVFSKKRVLEIAEEYSSRNIK-ASIIYGDLPPEVRKMQYEQF--INKET 353
Query: 293 DVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV 352
+LV +DAIGMG+NL I RIIF +++KFDG E+R+LT E+KQ+ GRAGR G + VG +
Sbjct: 354 KILVTTDAIGMGVNLPIRRIIFMSIRKFDGEEVRELTSQEIKQVGGRAGRLGI-YDVGYI 412
Query: 353 TCL 355
+
Sbjct: 413 ASV 415
>gi|118388031|ref|XP_001027116.1| Helicase conserved C-terminal domain containing protein
[Tetrahymena thermophila]
gi|89308886|gb|EAS06874.1| Helicase conserved C-terminal domain containing protein
[Tetrahymena thermophila SB210]
Length = 770
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 142/430 (33%), Positives = 220/430 (51%), Gaps = 59/430 (13%)
Query: 57 FDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWE 116
++ + PH Y RK RK+I H GPTNSGKTH AL L S+ SGIYCGPLRLLA E
Sbjct: 258 YNLLQIEEPHHLYQDTRKMKRKIIYHYGPTNSGKTHSALETLMSAKSGIYCGPLRLLARE 317
Query: 117 VAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA--DVVSDYDCAVIDEIQMLGCKTR 174
+ ++ + ++C+LITGQE+ ++ + T E+ + D+DCAVIDEIQ LG + R
Sbjct: 318 IYQKFKQRGLNCNLITGQEKLIEPDSQFYSCTTEIGCQKIDLDFDCAVIDEIQYLGDQER 377
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G ++T+A LG+ A E+H+CGD A+ L++ + + GD + YER+S L + P
Sbjct: 378 GAAWTKAFLGLKAKEIHVCGDGRALQLVENMCKQVGDQFETVKYERMSQLTVEDKPF-EL 436
Query: 235 SNIQTG-------------------DCIVTFSRHAIYRLKKAIES-----------RGKH 264
++Q G DC++ FS + K+ + + ++
Sbjct: 437 QDLQEGVYIYLQNLQFMPIQINKMKDCLICFSVNEAISFKRIVNNYINSKNPDNPQSQEN 496
Query: 265 LCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE 324
CSI+YG P E + QA FN+ + ++ LVA++AIG+GLNLNI R++F+T K +
Sbjct: 497 QCSIIYGRQPAEIKKEQAELFNNRTHKY--LVATNAIGLGLNLNIRRVVFTTFTKNHQSQ 554
Query: 325 LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFD 384
+ + E+ QIAGRAGRY G VT + ++ A FP ++
Sbjct: 555 RKGIDSNEILQIAGRAGRYRED---GLVTARNQ---------------TIQKAAFFPTYE 596
Query: 385 LIYMY------SRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLH 438
I + + L + + F+ + L YF N E A +I+ L L
Sbjct: 597 QIEGFRDWLSQGKKKKQIKLSEVFQKFVNYSTLQGAYFIENEREFCHKADLIEDYGLSLS 656
Query: 439 EKYLFCISPV 448
+++ F +P+
Sbjct: 657 DQFTFSQAPM 666
>gi|221057864|ref|XP_002261440.1| ATP dependent DEAD-box helicase [Plasmodium knowlesi strain H]
gi|194247445|emb|CAQ40845.1| ATP dependent DEAD-box helicase, putative [Plasmodium knowlesi
strain H]
Length = 939
Score = 238 bits (607), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 134/330 (40%), Positives = 195/330 (59%), Gaps = 30/330 (9%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
DF++L +KK RK+ L+VGPTNSGKT++A L SS+G+YC PLR+LAWE+
Sbjct: 206 DFSELNELVKKKKKKKKKARKLHLYVGPTNSGKTYEAFQSLCKSSNGLYCAPLRILAWEI 265
Query: 118 AKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
K+L K N +L+TGQE + A H TVEM + YDC V+DEIQM+ TRG +
Sbjct: 266 HKKLIKLNKVTNLLTGQEIIKEKNATHTVCTVEMTPLDKQYDCVVVDEIQMINHDTRGCA 325
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-VPLNVPLGSFSN 236
+T LL + E++LCG + L++++ + D++ ++ +ERL L V N +
Sbjct: 326 WTNVLLNLECEEIYLCGSDNIISLMKKLADLLEDELTIKQFERLGKLHVQENTV--EWEK 383
Query: 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD--- 293
++TGDC++TFSR++I LK +E K + ++YGSLPPE + Q FN ++ +
Sbjct: 384 LKTGDCVITFSRNSIMMLKNRLERLNKRV-FVIYGSLPPELKRSQVELFNRCCAQQEKIE 442
Query: 294 --------------------VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 333
+L+A+D IGMG+N+NI RIIF +++KFDG +LR L EV
Sbjct: 443 QVDDIPKAEVPFSNDKKKETILIATDVIGMGVNINIRRIIFYSLQKFDGDKLRYLYASEV 502
Query: 334 KQIAGRAGRY---GSKFPVGEVTCLDSEDL 360
QIAGRAGR+ G + G VTC + DL
Sbjct: 503 LQIAGRAGRFHHNGGEPITGYVTCFHAHDL 532
Score = 44.7 bits (104), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 48/83 (57%), Gaps = 7/83 (8%)
Query: 377 AGLFPNFDLIYMYSRL--HPDSS---LYGILEHFLENAKLSENYFF--ANCEEVLKVATV 429
AG FP+F++I R+ H + L+ I+ ++ AKL++NYFF N +++ +A
Sbjct: 645 AGFFPDFNMINQLKRMLEHEHKAKVELHEIMSILVDYAKLNDNYFFLTKNYNQMITIAKF 704
Query: 430 IDQLPLRLHEKYLFCISPVDMND 452
+ ++ L +++ + P+++ND
Sbjct: 705 LKEIKLDNETLFVYTLCPINVND 727
>gi|389691612|ref|ZP_10180406.1| DNA/RNA helicase, superfamily II [Microvirga sp. WSM3557]
gi|388588595|gb|EIM28885.1| DNA/RNA helicase, superfamily II [Microvirga sp. WSM3557]
Length = 808
Score = 238 bits (607), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 140/413 (33%), Positives = 241/413 (58%), Gaps = 13/413 (3%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+P+AR R+ + GPTNSGKTH+AL + + PLRLLA E +RL+ +
Sbjct: 297 FPVARSLDRRFLFLAGPTNSGKTHEALRLAGEAETAEILSPLRLLALEHYERLSGEGFAA 356
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
+ITG+ER +GA H A T+E D+ D VIDE+QMLG +RG+++T+A++G A
Sbjct: 357 GMITGEERVLPEGATHIARTIETLDLHRVVDVCVIDEVQMLGDPSRGWAWTQAMVGAPAK 416
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
+ L G P A+PL++ +L +TG+ ++V+ +R L VP + + + GD +V F+R
Sbjct: 417 LVVLTGAPEAIPLVEHLLAMTGEPLEVKILKRKGKLRVEGVP-ANLNKLTRGDAVVAFTR 475
Query: 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308
A++ L+ + + G+ + + VYG+L PE R +A RF + +E +LVA+DAIGMGLN+
Sbjct: 476 RAVHDLRTRLVASGRTVAT-VYGALGPEVRRAEAARFRNGEAE--ILVATDAIGMGLNIG 532
Query: 309 -ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSL 367
+ R++FST++KFDGV R L+ E+KQIAGRAGR+G G VT L +S+
Sbjct: 533 PLRRVVFSTLRKFDGVRERQLSAMEIKQIAGRAGRFGH-HDEGLVTALPEAGAYAQVESV 591
Query: 368 L------EPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSE-NYFFANC 420
+ + + + A + PN + + S + L +L H + + A+
Sbjct: 592 VRNALNGDAAKLRGKAYVRPNQETVLSASEVLQTDRLGRVLRHLYDTLVAGHPDLRMADM 651
Query: 421 EEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQ 473
+E++++A+++D + + + ++ + ++PVD + ++ + L +A +++ G V+
Sbjct: 652 DEMIELASLLDTVDMPILDRLSYAMAPVDGREQLAVELLIDWARQHARDGRVR 704
>gi|424827215|ref|ZP_18252024.1| helicase domain-containing protein [Clostridium sporogenes PA 3679]
gi|365980138|gb|EHN16174.1| helicase domain-containing protein [Clostridium sporogenes PA 3679]
Length = 588
Score = 238 bits (606), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 144/395 (36%), Positives = 222/395 (56%), Gaps = 27/395 (6%)
Query: 41 VDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLES 100
+ V+I + K+FD P Y R RK LH+G TN+GKT+ ++ +L+
Sbjct: 106 ISVLITRHIPTMIFKEFDRIFPKNPKDEYKEVRHMNRKFYLHLGETNTGKTYNSMEKLKK 165
Query: 101 SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDC 160
S GIY PLR+LA E ++LNK V CDLITG+E + GAKH T+E D+ ++YD
Sbjct: 166 SKKGIYLSPLRILALENFEKLNKEGVECDLITGEEEIKKKGAKHICCTIEKLDINAEYDV 225
Query: 161 AVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 220
A+IDEIQM+ RG ++TRA+L + E+H+CG + LI I++ GD+ +++ Y R
Sbjct: 226 AIIDEIQMIDDDQRGSAWTRAILALKCKEIHVCGALSTKELIINIIEDCGDEYELKEYFR 285
Query: 221 LSPLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 278
+PL + +F +I+ GD +VTFS+ + +L G S++YG+LPPE R
Sbjct: 286 ---NIPLKIEQEAFKLKDIKKGDALVTFSKKKVLQLADYYGDLGIK-TSVIYGNLPPEVR 341
Query: 279 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 338
+Q +F S + ++L+ +DAIGMG+NL I RIIF ++KFDG ++R LT EVKQI G
Sbjct: 342 KKQYEQF--ISEDSNILITTDAIGMGVNLPIRRIIFMDIRKFDGNDMRYLTSQEVKQIGG 399
Query: 339 RAGRYGSKFPVGEVTCL-DSEDL---------PLLHKSLLEPSPMLESAGLFPNFDLIYM 388
RAG G + +G + ++++ ++++++EPS + P + + +
Sbjct: 400 RAGILGI-YDIGYIASYGNTQNFVKEMIEVYDRKIYEAVIEPSEAILDVKSLPLREKLAL 458
Query: 389 YSRLHPDSSLY---GILEHFL-----ENAKLSENY 415
+S S LY I E L +N KL E Y
Sbjct: 459 WSTREEKSLLYRKMDIGEKILVLDSIKNYKLPEKY 493
>gi|182417417|ref|ZP_02948745.1| ATP-dependent RNA helicase, superfamily II [Clostridium butyricum
5521]
gi|237667662|ref|ZP_04527646.1| helicase domain protein [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182378731|gb|EDT76257.1| ATP-dependent RNA helicase, superfamily II [Clostridium butyricum
5521]
gi|237656010|gb|EEP53566.1| helicase domain protein [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 584
Score = 237 bits (605), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 129/338 (38%), Positives = 201/338 (59%), Gaps = 17/338 (5%)
Query: 55 KKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLA 114
K+F+ T P Y AR RK +H+G TN+GKT+ AL RL+ + G+Y PLR+LA
Sbjct: 119 KEFEETFPDNPKDEYKQARSMKRKFYIHLGDTNTGKTYTALERLKIAKKGVYLSPLRILA 178
Query: 115 WEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
E ++LN V CDL+TG+E + H + T+E ++ YD AVIDEIQM+ R
Sbjct: 179 LENYEKLNNEGVKCDLLTGEEEIVNADSTHVSCTIERVNLKEHYDIAVIDEIQMISDPFR 238
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G ++++++LG+ +E+H+CG A L+ +++ D+ +++ Y+R PLV + S+
Sbjct: 239 GMAWSKSVLGLQCDEIHVCGALNAKNLLIDMIEDCKDEYEIKEYKRAIPLVVEDTNF-SY 297
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
++++ GD +V FS+ + + + RG CSI+YG LPPE R Q +F + E V
Sbjct: 298 NHVKDGDALVVFSKKRVLEIAQEYSERGIK-CSIIYGDLPPEVRKMQYEQF--VNKETKV 354
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 354
LV +DAIGMG+NL I RI+F +++KFDG E+R+LT E+KQ+ GRAGR G + VG V
Sbjct: 355 LVTTDAIGMGVNLPIQRIVFMSIRKFDGEEVRELTSQEIKQVGGRAGRIGI-YDVGYVAA 413
Query: 355 -----------LDSEDLPLLHKSLLEPSPMLESAGLFP 381
++ ED P + ++++ PS + S P
Sbjct: 414 VGGNSHIIKEKIEREDAP-IERAVIGPSDAILSIKSLP 450
>gi|154336527|ref|XP_001564499.1| putative RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
gi|134061534|emb|CAM38564.1| putative RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
Length = 686
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 160/473 (33%), Positives = 240/473 (50%), Gaps = 63/473 (13%)
Query: 65 PHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKA 124
P WYP AR R+ I H GPTNSGKTH AL L + SG+YC PL+ LA +V R+ K
Sbjct: 129 PWDWYPQARLMRRRFIFHYGPTNSGKTHAALEALVRARSGVYCAPLKALATQVWYRV-KE 187
Query: 125 NVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLG 184
V CDL+ G ER A+H + TVEMA V D V+DEIQM+ + RG+++TRALLG
Sbjct: 188 RVPCDLLIGDERVFDGAAEHVSCTVEMAPVDVQVDVGVVDEIQMMADRDRGWAWTRALLG 247
Query: 185 ICANELHLCGDPAAVPLIQQILQVTGD--DVKVQSYERLSPLV--PLNVPLGSFSNIQTG 240
+ A E+HLCG+ A+PLIQ++L T + + + ++RL PL P ++ G
Sbjct: 248 LPAREIHLCGEARALPLIQKLLYATHERKSLLLVEHKRLVPLAVFPSLCSRLQPETVENG 307
Query: 241 DCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEF-------- 292
DC V FS+ + L+ + S +YG +P + R +A RFN +E+
Sbjct: 308 DCFVCFSKKEVLDLRDKLNRLPGVTSSAIYGVMPFQVREAEAARFNHGVAEYISASSTCV 367
Query: 293 --------------------------------DVLVASDAIGMGLNLNISRIIFSTMKKF 320
VLV++DAI GLN+NI RI+F+T++KF
Sbjct: 368 ANARDNAASPTTTSPRSSQSRVSSPEAAMPTKHVLVSTDAIAFGLNMNIERIVFTTLRKF 427
Query: 321 DGVELRDLTVPEVKQIAGRAGRYG--SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAG 378
DG + +L V+QIAGR+GR+G + VG T L D+ ++ L AG
Sbjct: 428 DGNGMIELPDATVQQIAGRSGRFGLTRQHAVGRCTVLHERDMTKFSAAMSAQLAPLGKAG 487
Query: 379 LFPNFDLIYMYSRLHP-----------DS---SLYGILEHFLENAKLSENYFFANCEE-V 423
L P D++ ++ L DS S + ++ F + SE++F + +
Sbjct: 488 LLPTGDVLQLFVELDAAKARKASKATLDSNGGSFFELMSRFAASCTASEHFFPCDIHRSL 547
Query: 424 LKVATVIDQL-PLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLR 475
L++A +++ + L L ++ LFC P+ S Q + +AT+++ V LR
Sbjct: 548 LRLAELLEPVRDLSLADRILFCYLPLSDTSAASLQLIVAYATDHAAGKPVTLR 600
>gi|187933176|ref|YP_001886414.1| ATP-dependent RNA helicase, superfamily II [Clostridium botulinum B
str. Eklund 17B]
gi|187721329|gb|ACD22550.1| ATP-dependent RNA helicase, superfamily II [Clostridium botulinum B
str. Eklund 17B]
Length = 585
Score = 237 bits (604), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 130/333 (39%), Positives = 204/333 (61%), Gaps = 21/333 (6%)
Query: 55 KKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLA 114
K+F+ T P Y R RK +H+G TN+GKT+ A+ RL+++ +G+Y PLR+LA
Sbjct: 120 KEFEEKFPTNPKDEYIHTRHMKRKFYIHLGDTNTGKTYNAIERLKTAKNGVYLSPLRILA 179
Query: 115 WEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
E +RLNK V CDL+TG+E GA H + T+E ++ YD AVIDEIQM+ R
Sbjct: 180 LENFERLNKEGVVCDLLTGEEEIIKVGATHASCTIEKVNLKEHYDIAVIDEIQMISDTHR 239
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G ++++A+LG+ +E+H+CG A +++++L+ D+ +++ Y+R +PL V +F
Sbjct: 240 GMAWSKAVLGLQCDEIHICGASNAKYILEKMLKDCNDEYEIKDYKR---SIPLEVEYKNF 296
Query: 235 --SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEF 292
++++ GD IV FS+ + + + G S++YG LPPE R Q +F + E
Sbjct: 297 NYNDVKDGDAIVVFSKKRVLEIAEDYSREGIK-ASVIYGDLPPEVRRMQYEQF--VNKET 353
Query: 293 DVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV 352
VLV +DAIGMG+NL I RIIF +++KFDG E+R+LT EVKQ+ GRAGR G + VG +
Sbjct: 354 KVLVTTDAIGMGVNLPIRRIIFMSIRKFDGEEVRELTSQEVKQVGGRAGRIGI-YDVGYI 412
Query: 353 -----------TCLDSEDLPLLHKSLLEPSPML 374
+ L++ED ++ K+++ PS +
Sbjct: 413 AGVGGTADFIKSKLEAED-NIIRKAVVGPSDAI 444
>gi|188590617|ref|YP_001921407.1| ATP-dependent RNA helicase, superfamily II [Clostridium botulinum
E3 str. Alaska E43]
gi|251777622|ref|ZP_04820542.1| helicase domain protein [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|188500898|gb|ACD54034.1| ATP-dependent RNA helicase, superfamily II [Clostridium botulinum
E3 str. Alaska E43]
gi|243081937|gb|EES47827.1| helicase domain protein [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 585
Score = 236 bits (603), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/333 (38%), Positives = 204/333 (61%), Gaps = 21/333 (6%)
Query: 55 KKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLA 114
K+F+ T P Y R RK +H+G TN+GKT+ A+ RL+++ +G+Y PLR+LA
Sbjct: 120 KEFEEKFPTNPKDEYIHTRHMKRKFYIHLGDTNTGKTYNAIERLKTAKNGVYLSPLRILA 179
Query: 115 WEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
E +RLNK V CDL+TG+E GA H + T+E ++ YD AVIDEIQM+ R
Sbjct: 180 LENFERLNKEGVVCDLLTGEEEIIKVGATHASCTIEKVNLKEHYDIAVIDEIQMISDTHR 239
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G ++++A+LG+ +E+H+CG A +++++L+ D+ +++ Y+R +PL V +F
Sbjct: 240 GMAWSKAVLGLQCDEIHICGASNAKYILEKMLKDCNDEYEIKDYKR---SIPLEVEYKNF 296
Query: 235 --SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEF 292
++++ GD IV FS+ + + + G S++YG LPPE R Q +F + E
Sbjct: 297 NYNDVKDGDAIVVFSKKRVLEIAEDYSREGIK-ASVIYGDLPPEVRRMQYEQF--VNKET 353
Query: 293 DVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV 352
VLV +DAIGMG+NL I RI+F +++KFDG E+R+LT EVKQ+ GRAGR G + VG +
Sbjct: 354 KVLVTTDAIGMGVNLPIRRIVFMSIRKFDGEEVRELTSQEVKQVGGRAGRIGI-YDVGYI 412
Query: 353 -----------TCLDSEDLPLLHKSLLEPSPML 374
+ L++ED ++ K+++ PS +
Sbjct: 413 AGVGGTADFIKSKLEAED-NIIRKAVVGPSEAI 444
>gi|82540244|ref|XP_724456.1| helicase [Plasmodium yoelii yoelii 17XNL]
gi|23479098|gb|EAA16021.1| Helicase conserved C-terminal domain, putative [Plasmodium yoelii
yoelii]
Length = 963
Score = 236 bits (602), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 131/350 (37%), Positives = 196/350 (56%), Gaps = 53/350 (15%)
Query: 58 DFTDLTRPHTWYPLARKKV----RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLL 113
DFT++ RKK RK+ L+VGPTNSGKTH+A ++ S +G+YC PLRLL
Sbjct: 220 DFTEINE-------IRKKKNNLNRKLYLYVGPTNSGKTHEAFNKFIDSKNGLYCSPLRLL 272
Query: 114 AWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKT 173
WE+ K+L + +L+TGQE + H T+EM + YDCA+IDEIQM+
Sbjct: 273 TWEIHKKLLNLKKNANLLTGQEIIKKANNTHTVCTIEMTPLNEKYDCAIIDEIQMINNSI 332
Query: 174 RGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS 233
RG+++T L+ + E++LCG V LI+++ + D V ++ ++RL+ L L + +
Sbjct: 333 RGYAWTHVLMNLKCEEIYLCGSEHIVNLIKELSDILHDQVIIKRFKRLNKL-KLEENVQA 391
Query: 234 FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFN----DAS 289
+++TGDCI++FSR+ I LK +E K + ++YG+LPPE++ +Q FN
Sbjct: 392 LDDVKTGDCIISFSRNNIMLLKTKLEKLNKRV-FVIYGTLPPESKKKQIELFNYYCKQTK 450
Query: 290 SEFD--------------------------------VLVASDAIGMGLNLNISRIIFSTM 317
++ D VLVA+D IGMGLN+ I RIIF ++
Sbjct: 451 NDCDNIKLKKNNDEENIKNEIYHIENYNHGNQKKETVLVATDVIGMGLNIKIRRIIFYSL 510
Query: 318 KKFDGVELRDLTVPEVKQIAGRAGRY----GSKFPVGEVTCLDSEDLPLL 363
KK+DG +R L V E+ QIAGRAGR+ G VTC++ ED+ +L
Sbjct: 511 KKYDGDIIRYLNVSEILQIAGRAGRFDKNDSENSSDGFVTCVNFEDMNIL 560
Score = 42.0 bits (97), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 59/116 (50%), Gaps = 7/116 (6%)
Query: 377 AGLFPNFDLIYMYSRL-----HPDSSLYGILEHFLENAKLSENYFF--ANCEEVLKVATV 429
AG FPNFD I S++ LY IL+ ++ KL+++YFF N +++ +A
Sbjct: 662 AGYFPNFDTIEKLSKILEFEYKAKIELYEILQILIDYLKLNDSYFFLTKNYNQIIFIAKF 721
Query: 430 IDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGLGSL 485
+ + + + +++ ISPV++N+ I L F ++S G V E + S+
Sbjct: 722 LKNINIDKNILFIYTISPVNINNIIMINILRTFIMSHSILGYVDFFECINADMLSM 777
>gi|359412285|ref|ZP_09204750.1| helicase domain-containing protein [Clostridium sp. DL-VIII]
gi|357171169|gb|EHI99343.1| helicase domain-containing protein [Clostridium sp. DL-VIII]
Length = 585
Score = 235 bits (600), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 125/293 (42%), Positives = 182/293 (62%), Gaps = 9/293 (3%)
Query: 65 PHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKA 124
P Y AR RK +H+G TN+GKT+ AL RL+ + G+Y PLR+LA E +RLNK
Sbjct: 130 PKDEYLKARGMKRKFYIHLGDTNTGKTYNALQRLKKAKKGVYLSPLRILALENFERLNKE 189
Query: 125 NVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLG 184
V CDL+TG+E GA H + T+E ++ YD AVIDEIQM+ RG ++++A+LG
Sbjct: 190 GVICDLLTGEEEIVNLGATHTSCTIEKVNLKEHYDIAVIDEIQMISDPFRGMAWSKAVLG 249
Query: 185 ICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS--NIQTGDC 242
+ +E+H+CG A +++ I++ DD +++ Y R +PL + +FS + GD
Sbjct: 250 LKCDEIHICGAANARFILETIIKDCKDDYEIKEYTR---AIPLEIEYKNFSYNDAVEGDA 306
Query: 243 IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 302
IV FS+ + + + SRG S++YG LPPE R Q +F + E +LV +DAIG
Sbjct: 307 IVVFSKKRVLEIAEEYSSRGIR-TSVIYGDLPPEVRKMQYEQF--INKENKILVTTDAIG 363
Query: 303 MGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 355
MG+NL I RIIF +++KFDG E+R+LT EVKQ+ GRAGR G + VG + +
Sbjct: 364 MGVNLPIRRIIFMSIRKFDGEEVRELTSQEVKQVGGRAGRIGI-YDVGYIASV 415
>gi|58040193|ref|YP_192157.1| RNA helicase [Gluconobacter oxydans 621H]
gi|58002607|gb|AAW61501.1| Putative RNA helicase [Gluconobacter oxydans 621H]
Length = 833
Score = 235 bits (600), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 158/421 (37%), Positives = 236/421 (56%), Gaps = 20/421 (4%)
Query: 72 ARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLI 131
AR R++ L GPTNSGK++ AL+ L ++ SG+ PLRLLA E + L V L
Sbjct: 309 ARALKRRITLVTGPTNSGKSYTALNALANAESGLALAPLRLLAHEFRESLLSRGVPASLS 368
Query: 132 TGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH 191
TG+ER E+ GA+H A TVEM + D A+IDE QML RG ++T A++G+ A +
Sbjct: 369 TGEERIEMPGARHLAATVEMCPFHNPVDVAIIDEAQMLADPDRGAAWTAAIMGVPARHVF 428
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
+ G P +PL+++I ++ D V ER SPL ++ D ++ FSR +
Sbjct: 429 ILGAPDCIPLVKRIAELCDDPVDEIHLERKSPLKAGET--LHLDELKPSDAVIAFSRREV 486
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
L+ + +RG+ + ++VYG+L PE R +A RFN S E D+L+A+DAIGMGLNL+I R
Sbjct: 487 LDLRAELMARGRRV-AVVYGALSPEVRRAEAARFN--SGEADILIATDAIGMGLNLSIRR 543
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE-- 369
++FS ++KFDG + RDL EVKQI GRAGRYG K G V L P + +L
Sbjct: 544 VVFSALRKFDGRQTRDLVSQEVKQIGGRAGRYG-KHESGLVCVLAGAGSPTFVRKMLSAP 602
Query: 370 PSPMLESAGLF-PNFDLIYMYSRLHPDSSLYGIL---EHFLENAKLSENYFFANCEEVLK 425
P + E L P+ D++ + SLYG+L +H + A NY A+ E+ L+
Sbjct: 603 PEEIKELRPLVQPDSDIVRAVAEEIDSDSLYGVLTRIKHAVLRAD-DPNYRLADMEQALE 661
Query: 426 VATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGLGS 484
+A ++ + L L ++ + + P+D D+ Q L Q+A +++ R + PG G
Sbjct: 662 IAAALEGVENLDLSTRWTYAMCPIDERDN-GIQRLIQWAADHAAG-----RSVPPPGTGR 715
Query: 485 L 485
L
Sbjct: 716 L 716
>gi|170750803|ref|YP_001757063.1| helicase domain-containing protein [Methylobacterium radiotolerans
JCM 2831]
gi|170657325|gb|ACB26380.1| helicase domain protein [Methylobacterium radiotolerans JCM 2831]
Length = 714
Score = 234 bits (597), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 144/394 (36%), Positives = 221/394 (56%), Gaps = 14/394 (3%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+ AR+ R ++ H+GPTNSGKT+ AL L ++ +G Y PLRLLA E + L + +
Sbjct: 236 FTAARRLNRTILFHMGPTNSGKTYAALQHLTAAETGAYLAPLRLLALENYETLRERGLRA 295
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
+ITG+E H A T+E AD+ D AVIDEIQML RG+++T AL G+ A
Sbjct: 296 GMITGEEVLGEANPTHTARTIETADLTRPIDVAVIDEIQMLSDPDRGWAWTNALFGVPAR 355
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
+ +CG A+ +++ + + ++V + R S + L ++ GD +V FSR
Sbjct: 356 TVIVCGSDDALSYVRRAAEAADESLEVIPFTRKS-PLLLLEEPVPLEKVEAGDAVVAFSR 414
Query: 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308
A++ ++ + +RG H + +YG+L PE R +A RF S E +VLV +DAIGMGLNL
Sbjct: 415 RAVHENREVLVARG-HRVATIYGALSPEVRRAEAARFR--SGEANVLVTTDAIGMGLNLG 471
Query: 309 -ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS-EDLPLLHKS 366
+ RI+FS ++K+DG R LT E++QIAGRAGRYG + VG V D P+ ++
Sbjct: 472 PLKRIVFSAVRKWDGTAERALTHSEIRQIAGRAGRYGHQ-DVGYVAATDPFAAEPI--RT 528
Query: 367 LLEPSPMLESAG----LFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANC-E 421
L +P +A + P+ I + SL+ +L HF + + F + E
Sbjct: 529 ALSGAPTAPAADTRFYVRPDLGAIRSVAEEMRTHSLHEVLTHFARATFYAGSPFQPSALE 588
Query: 422 EVLKVATVIDQLPLRLHEKYLFCISPVDMNDDIS 455
EVL+VA +D+ L + EK+ F + P+D D+I+
Sbjct: 589 EVLEVARTVDRARLPIEEKFAFSVCPIDRRDEIA 622
>gi|168180037|ref|ZP_02614701.1| helicase domain protein [Clostridium botulinum NCTC 2916]
gi|182668949|gb|EDT80925.1| helicase domain protein [Clostridium botulinum NCTC 2916]
Length = 588
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 124/306 (40%), Positives = 185/306 (60%), Gaps = 8/306 (2%)
Query: 41 VDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLES 100
V V+I + K+FD P Y R RK LH+G TN+GKT+ ++ RL+
Sbjct: 106 VSVLITRHIPTMIFKEFDRIFPKNPKDEYKEVRHMNRKFYLHLGETNTGKTYNSMERLKE 165
Query: 101 SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDC 160
S GIY PLR+LA E ++LNK + C+LITG+E + + A+H T+E D+ +YD
Sbjct: 166 SKKGIYLSPLRILALENFEKLNKEGIMCNLITGEEEIKKEKAQHVCCTIEKLDINEEYDV 225
Query: 161 AVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 220
A+IDEIQM+ RG ++TRA+L + E+H+CG LI I++ GD+ +++ Y R
Sbjct: 226 AIIDEIQMIDDDQRGSAWTRAILALRCKEIHVCGALNTKELIINIIEDCGDEYELKEYFR 285
Query: 221 LSPLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 278
+PL + +F +I+ GD +VTFS+ + +L G S++YG+LPPE R
Sbjct: 286 ---NIPLKIEEEAFKLKDIKKGDALVTFSKKKVLQLADYYGDLGIK-TSVIYGNLPPEVR 341
Query: 279 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 338
+Q +F S + ++L+ +DAIGMG+NL I RI+F ++KFDG ++R LT E+KQI G
Sbjct: 342 KKQYEQF--MSGDTNILITTDAIGMGVNLPIRRIVFMDIRKFDGNDMRYLTSQEIKQIGG 399
Query: 339 RAGRYG 344
RAGR G
Sbjct: 400 RAGRLG 405
>gi|315636701|ref|ZP_07891931.1| ATP-dependent RNA helicase [Arcobacter butzleri JV22]
gi|315479016|gb|EFU69719.1| ATP-dependent RNA helicase [Arcobacter butzleri JV22]
Length = 530
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 144/412 (34%), Positives = 228/412 (55%), Gaps = 18/412 (4%)
Query: 67 TWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANV 126
T YPLAR RK+ +VGPTNSGKT+ A+ +L+ ++SG+Y PLRLLA E + L ++ +
Sbjct: 19 TLYPLARSINRKLEFYVGPTNSGKTYNAMQKLKEANSGLYLAPLRLLALEGYEDLKESKI 78
Query: 127 SCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC 186
+ LITG+E+ A H T+EM D D D AVIDE+QML RG+++ A++G
Sbjct: 79 NASLITGEEQILDIEASHVCSTIEMLDFDLDVDVAVIDEVQMLEDDDRGWAWVNAIIGCP 138
Query: 187 ANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF 246
A ++ + G A+ +++I +D++V + R + L L+ S ++ G ++ F
Sbjct: 139 AKKIIMTGSVNALDAVKKIAAYLDEDLEVIKHTRKNELKILD-KWTSLEKLEDGTALIAF 197
Query: 247 SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 306
SR + +LK+ ++ K++ S++YG+L PE R +A RF + S+ +L+A+DAI MGLN
Sbjct: 198 SRSDVLKLKQRLQK--KYVVSVIYGNLSPEVRRDEAKRFREKKSQ--ILIATDAIAMGLN 253
Query: 307 LNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKS 366
L I I+F+T KFDGV R +TV E+ QIAGRAGR+G F G + + L + +
Sbjct: 254 LPIKTILFTTDTKFDGVSRRKITVNEIVQIAGRAGRFGH-FEAGYLGATRRDILAYIKEE 312
Query: 367 LLEPSPMLESAGLFPNFDLIYMYSRLHPDS------SLYGILEHFLENAKLSENYFFANC 420
P ++ P F + ++L S SL IL+ F +N + + AN
Sbjct: 313 FESPIKTIK-----PPFKVKINNNQLEALSSHIKTNSLTKILKFFADNMSFNGPFVAANI 367
Query: 421 EEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGI 471
+++ A ++D L L EKYL +P+ I Q + + KK +
Sbjct: 368 SSMIEAARIVDNKNGLSLEEKYLLAQAPITTKSTIILQAYDSYIASVIKKRV 419
>gi|149180840|ref|ZP_01859342.1| probable ATP-dependent RNA helicase [Bacillus sp. SG-1]
gi|148851359|gb|EDL65507.1| probable ATP-dependent RNA helicase [Bacillus sp. SG-1]
Length = 858
Score = 233 bits (595), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 141/345 (40%), Positives = 196/345 (56%), Gaps = 19/345 (5%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE 137
+ +LH+G TN+GKTHQAL + + SGIY PLRLLA EV RLN V C+L TG+E +
Sbjct: 374 RYVLHIGETNTGKTHQALESMREAGSGIYLAPLRLLALEVYDRLNNEGVPCNLKTGEEEK 433
Query: 138 EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 197
V GA H A TVEM ++D VIDE QM+ K RGFS+ +A+ A E+H+ G
Sbjct: 434 TVPGANHVACTVEMFYEKEEFDVVVIDEAQMMADKDRGFSWYKAITKARAREVHIIGSRN 493
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS--NIQTGDCIVTFSRHAIYRLK 255
P++ +L+ DV++ Y R +PL V FS + + GD +V FSR +
Sbjct: 494 VKPMLLGLLENC--DVEINEYNR---DIPLQVEEREFSLKHAKRGDALVCFSRRRVLETA 548
Query: 256 KAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFS 315
+++ G H S++YGS+PPETR +Q RF E V+VA+DAIGMGLNL I RI+F
Sbjct: 549 SKLQNNG-HSVSMIYGSMPPETRKKQMQRF--IKGETRVIVATDAIGMGLNLPIRRIVFL 605
Query: 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 375
KFDG R LT EVKQIAGRAGR G + VG+V ++D+ + K L + ++
Sbjct: 606 ENDKFDGTRRRILTSQEVKQIAGRAGRKGI-YDVGKVAF--TKDIKKMSKLLDQEDEPVQ 662
Query: 376 SAGLFPNFDLIYMYSRLHPD-SSLYGILEHF-----LENAKLSEN 414
S + P + + + + D + + E F + A LSE
Sbjct: 663 SFAIAPTNSIFERFQKYYHDLGRFFELWEKFESPFGTQKASLSEE 707
>gi|170760794|ref|YP_001786756.1| helicase [Clostridium botulinum A3 str. Loch Maree]
gi|169407783|gb|ACA56194.1| helicase domain protein [Clostridium botulinum A3 str. Loch Maree]
Length = 588
Score = 233 bits (594), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 123/306 (40%), Positives = 185/306 (60%), Gaps = 8/306 (2%)
Query: 41 VDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLES 100
+ V+I + K+FD P Y R RK LH+G TN+GKT+ ++ RL+
Sbjct: 106 ISVLITRHIPTMIFKEFDRIFPKNPKDEYKEVRHMNRKFYLHLGETNTGKTYNSMERLKE 165
Query: 101 SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDC 160
S GIY PLR+LA E ++LNK + C+LITG+E + + A+H T+E D+ +YD
Sbjct: 166 SKKGIYLSPLRILALENFEKLNKEGIMCNLITGEEEIKKEKAQHVCCTIEKLDINEEYDV 225
Query: 161 AVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 220
A+IDEIQM+ RG ++TRA+L + E+H+CG LI I++ GD+ +++ Y R
Sbjct: 226 AIIDEIQMIDDDQRGSAWTRAILALRCKEIHVCGALNTKELIINIIEDCGDEYELKEYFR 285
Query: 221 LSPLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 278
+PL + +F +I+ GD +VTFS+ + +L G S++YG+LPPE R
Sbjct: 286 ---NIPLKIEEEAFRLKDIKKGDALVTFSKKKVLQLADYYGDLGIK-TSVIYGNLPPEVR 341
Query: 279 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 338
+Q +F S + ++L+ +DAIGMG+NL I RI+F ++KFDG ++R LT E+KQI G
Sbjct: 342 KKQYEQF--MSGDTNILITTDAIGMGVNLPIRRIVFMDIRKFDGNDMRYLTSQEIKQIGG 399
Query: 339 RAGRYG 344
RAGR G
Sbjct: 400 RAGRLG 405
>gi|226948645|ref|YP_002803736.1| helicase domain-containing protein [Clostridium botulinum A2 str.
Kyoto]
gi|226840809|gb|ACO83475.1| helicase domain protein [Clostridium botulinum A2 str. Kyoto]
Length = 588
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 184/304 (60%), Gaps = 8/304 (2%)
Query: 43 VIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSS 102
V+I + K+FD P Y R RK LH+G TN+GKT+ ++ RL+ S
Sbjct: 108 VLITRHIPTMIFKEFDRIFPKNPKDEYKKVRHMNRKFYLHLGETNTGKTYNSMERLKESK 167
Query: 103 SGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAV 162
GIY PLR+LA E ++LNK + C+LITG+E + + A+H T+E D+ +YD A+
Sbjct: 168 KGIYLSPLRILALENFEKLNKEGIMCNLITGEEEIKKEKAQHVCCTIEKLDINEEYDVAI 227
Query: 163 IDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLS 222
IDEIQM+ RG ++TRA+L + E+H+CG LI I++ GD+ +++ Y R
Sbjct: 228 IDEIQMIDDDQRGSAWTRAILALRCKEIHVCGALNTKELIINIIEDCGDEYELKEYFR-- 285
Query: 223 PLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 280
+PL + +F +I+ GD +VTFS+ + +L G S++YG+LPPE R +
Sbjct: 286 -NIPLKIEEEAFKLKDIKKGDALVTFSKKKVLQLADYYGDLGIK-TSVIYGNLPPEVRKK 343
Query: 281 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 340
Q +F S + ++L+ +DAIGMG+NL I RI+F ++KFDG ++R LT E+KQI GRA
Sbjct: 344 QYEQF--MSGDTNILITTDAIGMGVNLPIRRIVFMDIRKFDGNDMRYLTSQEIKQIGGRA 401
Query: 341 GRYG 344
GR G
Sbjct: 402 GRLG 405
>gi|170756170|ref|YP_001781019.1| helicase [Clostridium botulinum B1 str. Okra]
gi|429245241|ref|ZP_19208647.1| helicase [Clostridium botulinum CFSAN001628]
gi|169121382|gb|ACA45218.1| helicase domain protein [Clostridium botulinum B1 str. Okra]
gi|428757730|gb|EKX80196.1| helicase [Clostridium botulinum CFSAN001628]
Length = 588
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 184/304 (60%), Gaps = 8/304 (2%)
Query: 43 VIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSS 102
V+I + K+FD P Y R RK LH+G TN+GKT+ ++ RL+ S
Sbjct: 108 VLITRHIPTMIFKEFDRIFPKNPKDEYKEVRHMNRKFYLHLGETNTGKTYNSMERLKESK 167
Query: 103 SGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAV 162
GIY PLR+LA E ++LNK + C+LITG+E + + A+H T+E D+ +YD A+
Sbjct: 168 KGIYLSPLRILALENFEKLNKEGIMCNLITGEEEIKKEKAQHVCCTIEKLDINEEYDVAI 227
Query: 163 IDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLS 222
IDEIQM+ RG ++TRA+L + E+H+CG LI I++ GD+ +++ Y R
Sbjct: 228 IDEIQMIDDDQRGSAWTRAILALRCKEIHVCGALNTKELIINIIEDCGDEYELKEYFR-- 285
Query: 223 PLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 280
+PL + +F +I+ GD +VTFS+ + +L G S++YG+LPPE R +
Sbjct: 286 -NIPLKIEEEAFKLKDIKKGDALVTFSKKKVLQLADYYGDLGIK-TSVIYGNLPPEVRKK 343
Query: 281 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 340
Q +F S + ++L+ +DAIGMG+NL I RI+F ++KFDG ++R LT E+KQI GRA
Sbjct: 344 QYEQF--MSGDTNILITTDAIGMGVNLPIRRIVFMDIRKFDGNDMRYLTSQEIKQIGGRA 401
Query: 341 GRYG 344
GR G
Sbjct: 402 GRLG 405
>gi|453329295|dbj|GAC88487.1| RNA helicase [Gluconobacter thailandicus NBRC 3255]
Length = 815
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 157/427 (36%), Positives = 238/427 (55%), Gaps = 26/427 (6%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+ AR R++ L GPTNSGK++ AL+ L ++ SG+ PLRLLA E + L V
Sbjct: 297 FRTARSLKRRITLVTGPTNSGKSYTALNALANAESGLALAPLRLLAHEFREALLNRGVPA 356
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
L TG+ER E+ GA+H A TVEM D A+IDE QML RG ++T A++G+ A
Sbjct: 357 SLATGEERIEMPGARHLAATVEMCPFHKPVDVAIIDEAQMLADPDRGAAWTAAIMGVPAR 416
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP---LNVPLGSFSNIQTGDCIVT 245
+ + G +PL+++I ++ D V ER SPL LN S + GD ++
Sbjct: 417 HVFILGAADCIPLVKRIAELCDDPVDEIHLERKSPLKAGGTLN-----LSELTAGDAVIA 471
Query: 246 FSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGL 305
FSR + ++ + +RG+ + ++VYG+L PE R +A RFN+ + D+L+A+DAIGMGL
Sbjct: 472 FSRREVLDMRAELMARGRRV-AVVYGALSPEVRRAEAARFNNGDA--DILIATDAIGMGL 528
Query: 306 NLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHK 365
NL+I R++FS ++KFDG + RDL EVKQI GRAGR+G K G V L P +
Sbjct: 529 NLSIRRVVFSALRKFDGRQTRDLISQEVKQIGGRAGRFG-KHEEGLVCVLAESGSPTFVR 587
Query: 366 SLLE--PSPMLESAGLF-PNFDLIYMYSRLHPDSSLYGILEHFLENAKL---SENYFFAN 419
+L P P+ E L P+ D++ + SLYG+L ++ A L NY A+
Sbjct: 588 QMLAAPPEPVTELRPLVQPDSDIVRAVAEEIGSDSLYGVLTR-IKRAVLRPDDPNYRLAD 646
Query: 420 CEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIF 478
E+ L++A ++ + L L ++ + + P+D D+ Q L +A +++ R +
Sbjct: 647 MEQSLEIAAALEGVEGLDLTARWTYAMCPIDERDN-GIQRLVSWAADHAAG-----RPVP 700
Query: 479 TPGLGSL 485
PG G L
Sbjct: 701 PPGTGRL 707
>gi|153939905|ref|YP_001390728.1| helicase [Clostridium botulinum F str. Langeland]
gi|152935801|gb|ABS41299.1| helicase domain protein [Clostridium botulinum F str. Langeland]
Length = 588
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 184/304 (60%), Gaps = 8/304 (2%)
Query: 43 VIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSS 102
V+I + K+FD P Y R RK LH+G TN+GKT+ ++ RL+ S
Sbjct: 108 VLITRHIPTMIFKEFDRIFPKNPKDEYKEVRHMNRKFYLHLGETNTGKTYNSMERLKESK 167
Query: 103 SGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAV 162
GIY PLR+LA E ++LNK + C+LITG+E + + A+H T+E D+ +YD A+
Sbjct: 168 KGIYLSPLRILALENFEKLNKEGIMCNLITGEEEIKKEKAQHVCCTIEKLDINEEYDVAI 227
Query: 163 IDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLS 222
IDEIQM+ RG ++TRA+L + E+H+CG LI I++ GD+ +++ Y R
Sbjct: 228 IDEIQMIDDDQRGSAWTRAILALRCKEIHVCGALNTKELIINIIEDCGDEYELKEYFR-- 285
Query: 223 PLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 280
+PL + +F +I+ GD +VTFS+ + +L G S++YG+LPPE R +
Sbjct: 286 -NIPLKIEEEAFKLKDIKKGDALVTFSKKKVLQLADYYGDLGIK-TSVIYGNLPPEVRKK 343
Query: 281 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 340
Q +F S + ++L+ +DAIGMG+NL I RI+F ++KFDG ++R LT E+KQI GRA
Sbjct: 344 QYEQF--MSGDTNILITTDAIGMGVNLPIRRIVFMDIRKFDGNDMRYLTSQEIKQIGGRA 401
Query: 341 GRYG 344
GR G
Sbjct: 402 GRLG 405
>gi|168184312|ref|ZP_02618976.1| helicase domain protein [Clostridium botulinum Bf]
gi|182672597|gb|EDT84558.1| helicase domain protein [Clostridium botulinum Bf]
Length = 588
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/306 (39%), Positives = 184/306 (60%), Gaps = 8/306 (2%)
Query: 41 VDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLES 100
+ V+I + K+FD P Y R RK LH+G TN+GKT+ ++ RL+
Sbjct: 106 ISVLITRHIPTMIFKEFDRIFPKNPKDEYKEVRHMNRKFYLHLGETNTGKTYNSMERLKE 165
Query: 101 SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDC 160
S GIY PLR+LA E ++LNK + C+LITG+E + + A+H T+E D+ +YD
Sbjct: 166 SKRGIYLSPLRILALENFEKLNKEGIMCNLITGEEEIKKEKAQHVCCTIEKLDINEEYDV 225
Query: 161 AVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 220
A+IDEIQM+ RG ++TRA+L + E+H+CG LI I++ GD+ +++ Y R
Sbjct: 226 AIIDEIQMIDDDQRGSAWTRAMLALRCKEIHVCGALNTKELITNIIEDCGDEYELKEYFR 285
Query: 221 LSPLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 278
+PL + +F +I+ GD +VTFS+ + +L G S++YG+LPPE R
Sbjct: 286 ---NIPLKIEEEAFKLKDIKKGDALVTFSKKKVLQLADYYGDLGIK-TSVIYGNLPPEVR 341
Query: 279 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 338
+Q +F S + ++L+ +DAIGMG+NL I RI+F ++KFDG ++R L E+KQI G
Sbjct: 342 KKQYEQF--MSGDTNILITTDAIGMGVNLPIRRIVFMDIRKFDGNDMRYLNSQEIKQIGG 399
Query: 339 RAGRYG 344
RAGR G
Sbjct: 400 RAGRLG 405
>gi|148379343|ref|YP_001253884.1| helicase domain-containing protein [Clostridium botulinum A str.
ATCC 3502]
gi|153931568|ref|YP_001383718.1| helicase [Clostridium botulinum A str. ATCC 19397]
gi|153937286|ref|YP_001387266.1| helicase [Clostridium botulinum A str. Hall]
gi|148288827|emb|CAL82911.1| putative helicase [Clostridium botulinum A str. ATCC 3502]
gi|152927612|gb|ABS33112.1| helicase domain protein [Clostridium botulinum A str. ATCC 19397]
gi|152933200|gb|ABS38699.1| helicase domain protein [Clostridium botulinum A str. Hall]
Length = 588
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 184/304 (60%), Gaps = 8/304 (2%)
Query: 43 VIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSS 102
V+I + K+FD P Y R RK LH+G TN+GKT+ ++ RL+ S
Sbjct: 108 VLITRHIPTMIFKEFDRIFPKNPKDEYKEVRHMNRKFYLHLGETNTGKTYNSMERLKESK 167
Query: 103 SGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAV 162
GIY PLR+LA E ++LNK + C+LITG+E + + A+H T+E D+ +YD A+
Sbjct: 168 KGIYLSPLRILALENFEKLNKEGIMCNLITGEEEIKKEKAQHVCCTIEKLDINEEYDVAI 227
Query: 163 IDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLS 222
IDEIQM+ RG ++TRA+L + E+H+CG LI I++ GD+ +++ Y R
Sbjct: 228 IDEIQMIDDDQRGSAWTRAILALRCKEIHVCGALNTKELIINIIEDCGDEYELKEYFR-- 285
Query: 223 PLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 280
+PL + +F +I+ GD +VTFS+ + +L G S++YG+LPPE R +
Sbjct: 286 -NIPLKIEEEAFKLKDIKKGDALVTFSKKKVLQLADYYGDLGIK-TSVIYGNLPPEVRKK 343
Query: 281 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 340
Q +F S + ++L+ +DAIGMG+NL I RI+F ++KFDG ++R LT E+KQI GRA
Sbjct: 344 QYEQF--MSGDTNILITTDAIGMGVNLPIRRIVFMDIRKFDGNDMRYLTSQEIKQIGGRA 401
Query: 341 GRYG 344
GR G
Sbjct: 402 GRLG 405
>gi|387817640|ref|YP_005677985.1| putative ATP-dependent RNA helicase [Clostridium botulinum H04402
065]
gi|322805682|emb|CBZ03247.1| putative ATP-dependent RNA helicase [Clostridium botulinum H04402
065]
Length = 588
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 123/304 (40%), Positives = 184/304 (60%), Gaps = 8/304 (2%)
Query: 43 VIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSS 102
V+I + K+FD P Y R RK LH+G TN+GKT+ ++ RL+ S
Sbjct: 108 VLITRHIPTMIFKEFDRIFPKNPKDEYKEVRHMNRKFYLHLGETNTGKTYNSMERLKESK 167
Query: 103 SGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAV 162
GIY PLR+LA E ++LNK + C+LITG+E + + A+H T+E D+ +YD A+
Sbjct: 168 KGIYLSPLRILALENFEKLNKEGIMCNLITGEEEIKKEKAQHVCCTIEKLDINEEYDVAI 227
Query: 163 IDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLS 222
IDEIQM+ RG ++TRA+L + E+H+CG LI I++ GD+ +++ Y R
Sbjct: 228 IDEIQMIDDDQRGSAWTRAILALRCKEIHVCGALNTKELIINIIEDCGDEYELKEYFR-- 285
Query: 223 PLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 280
+PL + +F +I+ GD +VTFS+ + +L G S++YG+LPPE R +
Sbjct: 286 -NIPLKIEEEAFKLKDIKKGDALVTFSKKKVLQLADYYGDLGIK-TSVIYGNLPPEVRKK 343
Query: 281 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 340
Q +F S + ++L+ +DAIGMG+NL I RI+F ++KFDG ++R LT E+KQI GRA
Sbjct: 344 QYEQF--MSGDTNILITTDAIGMGVNLPIRRIVFMDIRKFDGNDMRYLTSQEIKQIGGRA 401
Query: 341 GRYG 344
GR G
Sbjct: 402 GRLG 405
>gi|237794720|ref|YP_002862272.1| helicase domain-containing protein [Clostridium botulinum Ba4 str.
657]
gi|229261095|gb|ACQ52128.1| helicase domain protein [Clostridium botulinum Ba4 str. 657]
Length = 588
Score = 232 bits (592), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 122/306 (39%), Positives = 184/306 (60%), Gaps = 8/306 (2%)
Query: 41 VDVIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLES 100
+ V+I + K+FD P Y R RK LH+G TN+GKT+ ++ RL+
Sbjct: 106 ISVLITRHIPTMIFKEFDRIFPKNPKDEYKEVRHMNRKFYLHLGETNTGKTYNSMERLKE 165
Query: 101 SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDC 160
S GIY PLR+LA E ++LNK + C+LITG+E + + A+H T+E D+ +YD
Sbjct: 166 SKRGIYLSPLRILALENFEKLNKEGIMCNLITGEEEIKKEKAQHVCCTIEKLDINEEYDV 225
Query: 161 AVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 220
A+IDEIQM+ RG ++TRA+L + E+H+CG LI I++ GD+ +++ Y R
Sbjct: 226 AIIDEIQMIDDDQRGSAWTRAMLALRCKEIHVCGALNTKELITNIIEDCGDEYELKEYFR 285
Query: 221 LSPLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 278
+PL + +F +I+ GD +VTFS+ + +L G S++YG+LPPE R
Sbjct: 286 ---NIPLKIEEEAFKLKDIKKGDALVTFSKKKVLQLADYYGDLGIK-TSVIYGNLPPEVR 341
Query: 279 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 338
+Q +F S + ++L+ +DAIGMG+NL I RI+F ++KFDG ++R L E+KQI G
Sbjct: 342 KKQYEQF--MSGDTNILITTDAIGMGVNLPIRRIVFMDIRKFDGNDMRYLNSQEIKQIGG 399
Query: 339 RAGRYG 344
RAGR G
Sbjct: 400 RAGRLG 405
>gi|384156713|ref|YP_005539528.1| ATP-dependent RNA helicase [Arcobacter butzleri ED-1]
gi|345470267|dbj|BAK71718.1| ATP-dependent RNA helicase [Arcobacter butzleri ED-1]
Length = 530
Score = 232 bits (591), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 144/412 (34%), Positives = 227/412 (55%), Gaps = 18/412 (4%)
Query: 67 TWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANV 126
T YPLAR RK+ +VGPTNSGKT+ A+ +L+ ++SG+Y PLRLLA E + L ++ +
Sbjct: 19 TLYPLARSINRKLEFYVGPTNSGKTYNAMQKLKEANSGLYLAPLRLLALEGYEDLKESKI 78
Query: 127 SCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC 186
+ LITG+E+ A H T+EM D D D AVIDE+QML RG+++ A++G
Sbjct: 79 NASLITGEEQILDIEASHVCSTIEMLDFDLDVDVAVIDEVQMLEDDDRGWAWVNAIIGCP 138
Query: 187 ANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF 246
A ++ + G A+ +++I +D++V + R + L L+ S ++ G ++ F
Sbjct: 139 AKKIIMTGSVNALDAVKKIAVYLDEDLEVIKHTRKNELKILD-KWTSLEKLEDGTALIAF 197
Query: 247 SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 306
SR + +LK+ ++ K+ S++YG+L PE R +A RF + S+ +L+A+DAI MGLN
Sbjct: 198 SRSDVLKLKQRLQK--KYAVSVIYGNLSPEVRRDEAKRFREKKSQ--ILIATDAIAMGLN 253
Query: 307 LNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKS 366
L I I+F+T KFDGV R +TV E+ QIAGRAGR+G F G + + L + +
Sbjct: 254 LPIKTILFTTDTKFDGVSRRKITVNEIVQIAGRAGRFGH-FEAGYLGATRRDILAYIKEE 312
Query: 367 LLEPSPMLESAGLFPNFDLIYMYSRLHPDS------SLYGILEHFLENAKLSENYFFANC 420
P ++ P F + ++L S SL IL+ F +N + + AN
Sbjct: 313 FESPIKTIK-----PPFKVKINNNQLEALSSHIKTNSLTKILKFFADNMSFNGPFVAANI 367
Query: 421 EEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGI 471
+++ A ++D L L EKYL +P+ I Q + + KK +
Sbjct: 368 SSMIEAARIVDNKNGLSLEEKYLLAQAPITTKSTIILQAYDSYIASVIKKRV 419
>gi|410943887|ref|ZP_11375628.1| RNA helicase [Gluconobacter frateurii NBRC 101659]
Length = 821
Score = 231 bits (590), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 156/421 (37%), Positives = 235/421 (55%), Gaps = 20/421 (4%)
Query: 72 ARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLI 131
AR R++ L GPTNSGK++ AL+ L ++ SG+ PLRLLA E + L V L
Sbjct: 305 ARSLKRRITLVTGPTNSGKSYTALNALANAESGLALAPLRLLAHEFREALLNRGVPASLA 364
Query: 132 TGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH 191
TG+ER E+ GA+H A TVEM D A+IDE QML RG ++T A++G+ A +
Sbjct: 365 TGEERIEMPGARHLAATVEMCPFHKPVDVAIIDEAQMLADPDRGAAWTAAIMGVPARHVF 424
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
+ G +PL+++I ++ D V ER SPL S + GD ++ FSR +
Sbjct: 425 ILGAADCIPLVKRIAELCDDPVDEIHLERKSPLKAGGTL--HLSELTAGDAVIAFSRREV 482
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
++ + +RG+ + ++VYG+L PE R +A RFN S + D+L+A+DAIGMGLNL+I R
Sbjct: 483 LDMRAELMARGRRV-AVVYGALSPEVRRAEAARFN--SGDADILIATDAIGMGLNLSIRR 539
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE-- 369
++FS ++KFDG + RDL EVKQI GRAGR+G K G V L P + +L
Sbjct: 540 VVFSALRKFDGRQTRDLISQEVKQIGGRAGRFG-KHEEGLVCVLAESGSPTFVRQMLAAP 598
Query: 370 PSPMLESAGLF-PNFDLIYMYSRLHPDSSLYGILEHFLENAKL---SENYFFANCEEVLK 425
P P+ E L P+ D++ + SLYG+L ++ A L NY A+ E+ L+
Sbjct: 599 PEPVTELRPLVQPDSDIVRAVAEEIGSDSLYGVLTR-IKRAVLRPDDPNYRLADMEQSLE 657
Query: 426 VATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGLGS 484
+A ++ + L L ++ + + P+D D+ Q L +A +++ R + PG G
Sbjct: 658 IAAALEGVEGLDLTTRWTYAMCPIDERDN-GIQRLVSWAADHAAG-----RPVPPPGTGR 711
Query: 485 L 485
L
Sbjct: 712 L 712
>gi|414341174|ref|YP_006982695.1| RNA helicase [Gluconobacter oxydans H24]
gi|411026509|gb|AFV99763.1| putative RNA helicase [Gluconobacter oxydans H24]
Length = 815
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 155/421 (36%), Positives = 235/421 (55%), Gaps = 20/421 (4%)
Query: 72 ARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLI 131
AR R++ L GPTNSGK++ AL+ L ++ SG+ PLRLLA E + L V L
Sbjct: 300 ARSLKRRITLVTGPTNSGKSYTALNALANAESGLALAPLRLLAHEFREALLNRGVPASLA 359
Query: 132 TGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH 191
TG+ER E+ GA+H A TVEM D A+IDE QML RG ++T A++G+ A +
Sbjct: 360 TGEERIEMPGARHLAATVEMCPFHKPVDVAIIDEAQMLADPDRGAAWTAAIMGVPARHVF 419
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
+ G +PL+++I ++ D V ER SPL S + GD ++ FSR +
Sbjct: 420 ILGAADCIPLVKRIAELCDDPVDEIHLERKSPLKAGGTL--HLSELTAGDAVIAFSRREV 477
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
++ + +RG+ + ++VYG+L PE R +A RFN+ + D+L+A+DAIGMGLNL+I R
Sbjct: 478 LDMRAELMARGRRV-AVVYGALSPEVRRAEAARFNNGDA--DILIATDAIGMGLNLSIRR 534
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE-- 369
++FS ++KFDG + RDL EVKQI GRAGR+G K G V L P + +L
Sbjct: 535 VVFSALRKFDGRQTRDLISQEVKQIGGRAGRFG-KHEEGLVCVLAESGSPTFVRQMLAAP 593
Query: 370 PSPMLESAGLF-PNFDLIYMYSRLHPDSSLYGILEHFLENAKL---SENYFFANCEEVLK 425
P P+ E L P+ D++ + SLYG+L ++ A L NY A+ E+ L+
Sbjct: 594 PEPVTELRPLVQPDSDIVRAVAEEIGSDSLYGVLTR-IKRAVLRPDDPNYRLADMEQSLE 652
Query: 426 VATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGLGS 484
+A ++ + L L ++ + + P+D D+ Q L +A +++ R + PG G
Sbjct: 653 IAAALEGVEGLDLTARWTYAMCPIDERDN-GIQRLVSWAADHAAG-----RPVPPPGTGR 706
Query: 485 L 485
L
Sbjct: 707 L 707
>gi|319653094|ref|ZP_08007196.1| hypothetical protein HMPREF1013_03811 [Bacillus sp. 2_A_57_CT2]
gi|317395015|gb|EFV75751.1| hypothetical protein HMPREF1013_03811 [Bacillus sp. 2_A_57_CT2]
Length = 858
Score = 231 bits (589), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 134/340 (39%), Positives = 203/340 (59%), Gaps = 14/340 (4%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
Y + ++ ++ +LH+G TN+GKTH AL ++S+ SG+Y PLRLLA EV +LN+ + C
Sbjct: 365 YSPSVERAKRYVLHIGETNTGKTHHALEGMKSAQSGMYLAPLRLLALEVYDKLNREGIPC 424
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
L TG+E + V G++H + TVEM YD VIDE QM+ K RGFS+ +A+ AN
Sbjct: 425 SLKTGEEEKAVAGSEHLSSTVEMFYEKDYYDVIVIDEAQMITDKDRGFSWYKAITKANAN 484
Query: 189 ELHLCGDPAAVPLIQQILQVTGD-DVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFS 247
E+H+ G +A + +LQ+ G+ D+++ Y R PL + FS+++ GD ++ FS
Sbjct: 485 EVHIIGSRSAKSM---MLQLLGEADIELNEYSRDIPL-EVEAKEFKFSHVRKGDALICFS 540
Query: 248 RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307
R + ++ G H S++YG++PPETR +Q RF E V+V++DAIGMGLNL
Sbjct: 541 RKRVLETASRLQQEG-HSVSMIYGAMPPETRKKQVQRF--TKGETSVIVSTDAIGMGLNL 597
Query: 308 NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSL 367
I RI+F KFDG + R LT EVKQIAGRAGR G + +G+V ++D+ + K+L
Sbjct: 598 PIRRIVFLENDKFDGTKRRTLTSQEVKQIAGRAGRKGL-YNIGKVAF--TKDIKRM-KAL 653
Query: 368 LEPSPM-LESAGLFPNFDLIYMYSRLHPD-SSLYGILEHF 405
LE + S + P + + R + D S + + + F
Sbjct: 654 LEMEDAPVHSFAIAPTNTVFERFQRYYRDLGSFFELWDKF 693
>gi|253996211|ref|YP_003048275.1| helicase domain-containing protein [Methylotenera mobilis JLW8]
gi|253982890|gb|ACT47748.1| helicase domain protein [Methylotenera mobilis JLW8]
Length = 512
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 148/397 (37%), Positives = 221/397 (55%), Gaps = 20/397 (5%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+ LARK R ++GPTNSGKT+QAL LE + SG+Y PLRLLA E+ RL A V C
Sbjct: 17 FHLARKLKRHHRFYLGPTNSGKTYQALLALEQAKSGVYLAPLRLLAMEIRDRLVAAGVPC 76
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
+LITG+ER ++ A+H A T+EM + + + AVIDEIQML RG ++T AL+G+ A
Sbjct: 77 NLITGEERVMMEHAQHTASTIEMMNAHKEVEVAVIDEIQMLQDPDRGSAWTAALVGVPAA 136
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL--GSFS------NIQTG 240
+ +CG A ++ + + R +PLV L +S +Q G
Sbjct: 137 TVFICGSTAVTAPCIATIKTLNESYDITQLVRKTPLVLEQDSLCGKHYSRQKLKPKLQKG 196
Query: 241 DCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 300
D I+ FSR + G + SI YG+L PE R ++ RFN + + D+LVA+DA
Sbjct: 197 DAIIAFSRKDVLTFAARFRQWGFSVASI-YGALSPEVRRTESERFN--TGQADILVATDA 253
Query: 301 IGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL 360
IGMGLNL I RIIF+ + KFDGV R L + EV+QIAGRAGR+G + G V+ L++++
Sbjct: 254 IGMGLNLPIRRIIFANIHKFDGVASRLLNMTEVRQIAGRAGRFGI-YATGYVSVLENDE- 311
Query: 361 PLLH-KSLLEPSPMLESAGLFPNFDLIYMYSRLHP--DSSLYGILEHFLENAKLSENYF- 416
LLH + +L + + L N +L + + H + + +L + E + + F
Sbjct: 312 -LLHIEHMLSADDTADLSKLPVNINLQQVSNIAHQMHTNKIAEVLSYHQERTRFNHAIFE 370
Query: 417 FANCEEVLKVATVIDQLP--LRLHEKYLFCISPVDMN 451
A+ + A ++D + L +KY+F +P+ +N
Sbjct: 371 QASLTTQITQALIVDAYAPKMSLKDKYIFVFAPISLN 407
>gi|319956822|ref|YP_004168085.1| helicase domain-containing protein [Nitratifractor salsuginis DSM
16511]
gi|319419226|gb|ADV46336.1| helicase domain protein [Nitratifractor salsuginis DSM 16511]
Length = 939
Score = 230 bits (587), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 141/384 (36%), Positives = 220/384 (57%), Gaps = 7/384 (1%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+PLAR+ RK+ H GPTNSGKT+ A+ RL+ + +G Y PLRLLA E + L + ++
Sbjct: 426 FPLARRLKRKITFHAGPTNSGKTYAAMERLKKAETGYYLAPLRLLALEGYEDLRHSGIAA 485
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
LITG+E + + H + T+EM + + +C VIDEIQM+ + RG+++ AL+G A
Sbjct: 486 SLITGEEEIVDEESTHISSTIEMLNTEVEVECCVIDEIQMIDDRDRGWAWANALIGAPAK 545
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
E+ L G A+ +Q++ G++++V +ER +PL + P+ S I+ IV FSR
Sbjct: 546 EVILTGSENAIEAVQEVCDYLGEELEVIRFERKNPLELMKHPV-STKKIEPNTAIVAFSR 604
Query: 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308
+ LK+ + +R + S+VYG+L PE R +A RF + S+ VLVA+DAI MGLNL
Sbjct: 605 KEVLSLKQQLSNR--YNVSVVYGNLSPEVRREEARRFREGESQ--VLVATDAIAMGLNLP 660
Query: 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL 368
I I+F+ KFDG+ R+LT E+ QIAGRAGRYG G V LD+ L +
Sbjct: 661 IRTILFAKDNKFDGLRRRELTTSEILQIAGRAGRYGLH-EHGYVGALDAGTLQTIAARFH 719
Query: 369 EPSPMLE-SAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVA 427
P P + + + + + + + L ILE F +N + + AN + +++VA
Sbjct: 720 APLPPIRLPFSVMASLEHVLLIGEILETDKLLEILEFFAQNMEFEGPFQAANIDSMMEVA 779
Query: 428 TVIDQLPLRLHEKYLFCISPVDMN 451
++D+ L L +Y +PV ++
Sbjct: 780 AIVDEYELDLRSRYHLACAPVSIS 803
>gi|317128751|ref|YP_004095033.1| helicase [Bacillus cellulosilyticus DSM 2522]
gi|315473699|gb|ADU30302.1| helicase domain protein [Bacillus cellulosilyticus DSM 2522]
Length = 850
Score = 230 bits (586), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 141/328 (42%), Positives = 193/328 (58%), Gaps = 20/328 (6%)
Query: 70 PLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD 129
PL R + +LH+G TN+GKT QAL + + SG+Y PLRLLA EV +LN V C
Sbjct: 359 PLGRNI--RYVLHIGETNTGKTFQALKSMSEAKSGLYLAPLRLLALEVYDKLNGEGVPCS 416
Query: 130 LITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE 189
L TG+E +EVD A H + TVEM +D VIDE QM+ K RGFS+ +A+ ANE
Sbjct: 417 LKTGEEEKEVDNANHYSCTVEMFHEKEYFDVIVIDEAQMIADKDRGFSWYKAITKANANE 476
Query: 190 LHLCGDPAAVPLIQQILQVTGD-DVKVQSYERLSPLVPLNVPLGSFSNIQT--GDCIVTF 246
+H+ G +V + ILQ+ GD +V + YER +PL V F+ QT GD +V F
Sbjct: 477 VHIIG---SVNSKEMILQLLGDSNVVIHEYER---DIPLQVEKKEFNLKQTKKGDALVCF 530
Query: 247 SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 306
SR + +E+ G H S+VYGS+PPETR +Q F D + V+V++DAIGMGLN
Sbjct: 531 SRRRVLETASNLENNG-HRVSMVYGSMPPETRKKQMKLFIDGKT--TVIVSTDAIGMGLN 587
Query: 307 LNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKS 366
L I RI+F KFDG R L+ EVKQIAGRAGR G + VG+V ++++ L+ +
Sbjct: 588 LPIRRIVFLENDKFDGTRRRRLSSQEVKQIAGRAGRKGI-YDVGKVAF--TKEIKLMKRL 644
Query: 367 LLEPSPMLESAGLFPN---FDLIYMYSR 391
L + +++ + P F+ YSR
Sbjct: 645 LNQQDFPVQTFAIAPTNNVFERFQHYSR 672
>gi|157738406|ref|YP_001491090.1| ATP-dependent RNA helicase [Arcobacter butzleri RM4018]
gi|157700260|gb|ABV68420.1| probable ATP-dependent RNA helicase [Arcobacter butzleri RM4018]
Length = 544
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 143/412 (34%), Positives = 226/412 (54%), Gaps = 18/412 (4%)
Query: 67 TWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANV 126
T YPLAR RK+ +VGPTNSGKT+ A+ +L+ ++SG+Y PLRLLA E + L ++ +
Sbjct: 33 TLYPLARSINRKLEFYVGPTNSGKTYNAMQKLKEANSGLYLAPLRLLALEGYEDLKESKI 92
Query: 127 SCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC 186
+ LITG+E+ A H T+EM D D D AVIDE+QML RG+++ A++G
Sbjct: 93 NASLITGEEQILDIEASHVCSTIEMLDFDLDVDVAVIDEVQMLEDDDRGWAWVNAIIGCP 152
Query: 187 ANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF 246
A ++ + G A+ +++I +D++V + R + L L+ S ++ G ++ F
Sbjct: 153 AKKIIMTGSVNALDAVKKIAAYLDEDLEVIKHTRKNELKILD-KWTSLEKLEDGTALIAF 211
Query: 247 SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 306
SR + +LK+ ++ K+ S++YG+L PE R +A RF + S+ +L+A+DAI MGLN
Sbjct: 212 SRSDVLKLKQRLQK--KYAVSVIYGNLSPEVRRDEAKRFREKKSQ--ILIATDAIAMGLN 267
Query: 307 LNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKS 366
L I I+F+T KFDGV R +TV E+ QIAGRAGR+G F G + + L + +
Sbjct: 268 LPIKTILFTTDTKFDGVSRRKITVNEIVQIAGRAGRFGH-FEAGYLGATRRDILAYIKEE 326
Query: 367 LLEPSPMLESAGLFPNFDLIYMYSRLHPDS------SLYGILEHFLENAKLSENYFFANC 420
++ P F + ++L S SL IL+ F +N + + AN
Sbjct: 327 FESSIKTIK-----PPFKVKINNNQLEALSSHIKTNSLTKILKFFADNMSFNGPFVAANI 381
Query: 421 EEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGI 471
+++ A ++D L L EKYL +P+ I Q + + KK +
Sbjct: 382 SSMIEAARIVDNKNGLSLEEKYLLAQAPITTKSTIILQAYDSYIASVIKKRV 433
>gi|445495736|ref|ZP_21462780.1| helicase domain-containing protein [Janthinobacterium sp. HH01]
gi|444791897|gb|ELX13444.1| helicase domain-containing protein [Janthinobacterium sp. HH01]
Length = 659
Score = 229 bits (585), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 144/416 (34%), Positives = 229/416 (55%), Gaps = 14/416 (3%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN--- 125
+ +AR+ RK I +GPTNSGKTHQA+ L + SG+Y PLRLLA E +RL
Sbjct: 176 FEVARRIKRKFIALLGPTNSGKTHQAIEALAKAPSGVYLAPLRLLALENYERLQGMEAHG 235
Query: 126 --VSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALL 183
++ L+TG+ER V GA H A TVEM D + D AVIDEIQML + RG ++T A+
Sbjct: 236 KPLAVSLVTGEERRLVAGATHVASTVEMLDTRTPVDVAVIDEIQMLADRDRGSAWTAAVC 295
Query: 184 GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCI 243
G A+ ++L G P A I+ + +++V +R PL + SN++ GD +
Sbjct: 296 GAPAHVVYLVGAPEARRAIEVLAARLECELEVHVLKRKGPLSMEPTAVRKLSNLRRGDAV 355
Query: 244 VTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM 303
+ FSR + + + G + + VYG+L PE R QA RF D ++ DV+V +DAI M
Sbjct: 356 ICFSRREVLMWRDMVTELGLSVAT-VYGNLSPEVRRAQAQRFRDGAA--DVVVGTDAIAM 412
Query: 304 GLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLL 363
GLN+ I+RI+ +T K++G E ++ +QIAGRAGR+G G V D+E ++
Sbjct: 413 GLNMPIARIVMTTSVKYNGYEEEEIPAALARQIAGRAGRFGV-HEEGLVAGYDNETHNVM 471
Query: 364 HKSLLEPSPM-LESAG--LFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFAN- 419
+SL+ P+ L++ G + P + ++ S + + +L +L+ F+ N + + +F+
Sbjct: 472 -RSLMAEKPVPLKTTGFAVAPTLEHLHRISSVTNEHALAKLLKRFVHNIDVPDGFFYPRI 530
Query: 420 CEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLR 475
E+ + A +D L L + EK+ + P+ + +AT+ + K I L+
Sbjct: 531 TEDQFERAAWLDTLALTVAEKFALSLVPISSKVPSLQRAWEHWATSLAAKKITHLK 586
>gi|313681195|ref|YP_004058933.1| helicase domain-containing protein [Sulfuricurvum kujiense DSM
16994]
gi|313154055|gb|ADR32733.1| helicase domain protein [Sulfuricurvum kujiense DSM 16994]
Length = 940
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 142/393 (36%), Positives = 221/393 (56%), Gaps = 15/393 (3%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
DF +L +PLAR R++I H GPTNSGKT+ A +L+ + +G Y PLRLLA E
Sbjct: 420 DFKNL------FPLARSLRRRLIFHTGPTNSGKTYTAFQQLKKAGTGYYLAPLRLLALEG 473
Query: 118 AKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
+ L + VS LITG+E+ + A H + T+EM S+ DC VIDE+QM+ + RG++
Sbjct: 474 YENLREQGVSASLITGEEQLLDEDATHISSTIEMLSFESEVDCCVIDEVQMIDDRDRGWA 533
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNI 237
+ A++G A + + G P A I + + G+ +++ +ER +PL L P + I
Sbjct: 534 WANAIIGAPAKTVIMTGSPNAKEAIIALAEYLGEPLEIIEFERKNPLELLKSP-TPITAI 592
Query: 238 QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 297
+ ++ F+R RLK+ + + S++YG+L PE R +A RF + + D+LVA
Sbjct: 593 EPKTAVIAFTRSNALRLKQQLSK--TYRTSVIYGNLSPEVRREEARRFREGET--DILVA 648
Query: 298 SDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG--SKFPVGEVTCL 355
+DAI MGLNL I ++FS KFDG R+LT EV+QI+GRAGRYG K VG +T
Sbjct: 649 TDAISMGLNLPIKTLLFSKADKFDGQNQRNLTATEVRQISGRAGRYGLSEKGYVGALTAD 708
Query: 356 DSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENY 415
+ + L +E P++ + NFD I + S + + SL I++ F+ N K +
Sbjct: 709 VLKTISSLFTKAIE--PIVLPFNVMANFDHIMLVSNILEEKSLSNIVDFFVRNMKFEGPF 766
Query: 416 FFANCEEVLKVATVIDQLPLRLHEKYLFCISPV 448
AN E + + + ++D+ L + KY +P+
Sbjct: 767 RAANLESMQEASAIVDRYDLDMRTKYTLATAPL 799
>gi|78778161|ref|YP_394476.1| helicase-like protein [Sulfurimonas denitrificans DSM 1251]
gi|78498701|gb|ABB45241.1| Helicase-like protein [Sulfurimonas denitrificans DSM 1251]
Length = 932
Score = 229 bits (584), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 143/384 (37%), Positives = 222/384 (57%), Gaps = 9/384 (2%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+PLAR RK+ LH+GPTNSGKT+QA+ +L+S+ +G Y PLRLLA E + L +S
Sbjct: 425 FPLARDMRRKLTLHIGPTNSGKTYQAMQKLKSADTGYYLAPLRLLALEGYEDLRDDGISA 484
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
LITG+E+ + A H + T+EM + D D VIDE+QML + RG+++ A++G A
Sbjct: 485 SLITGEEQIVDEDATHISSTIEMVNFDVDVDVCVIDEVQMLDDRDRGWAWANAIIGAPAK 544
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
E+ + G A I + + G+++++ +ER +PL+ L+ P +++ I+ FSR
Sbjct: 545 EIIMTGSINAKEAIIALAEYLGEELEIIEFERKNPLILLDSPTHE-KDVEANTAIIAFSR 603
Query: 249 HAIYRLKKAIESRGKHL-CSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307
+ +LK+ KH S+VYG+L PE R +A RF S E VLVA+DAI MG+NL
Sbjct: 604 KDVLKLKQVF---SKHFSVSVVYGNLSPEVRREEARRFR--SGETQVLVATDAIAMGMNL 658
Query: 308 NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSL 367
I I+FS +KFDGV R L E+ QI+GRAGRYG G V L + L ++ K+
Sbjct: 659 PIKTILFSKAEKFDGVNDRTLIPSEIHQISGRAGRYGLH-EKGYVGALSGDVLNIIKKNF 717
Query: 368 -LEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKV 426
E + + N D I + + + SL+ IL+ F++N + + N +++L++
Sbjct: 718 NKEAKSITIPFRVMANLDHIKLVGTILEEKSLHEILKFFVKNMEFDGPFVATNLDDMLEI 777
Query: 427 ATVIDQLPLRLHEKYLFCISPVDM 450
+T++D L L KY +P+ +
Sbjct: 778 STLVDTYNLDLVTKYHLACAPMTL 801
>gi|258574047|ref|XP_002541205.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237901471|gb|EEP75872.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 462
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 145/361 (40%), Positives = 211/361 (58%), Gaps = 25/361 (6%)
Query: 151 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 210
MA + + D AVIDEIQM+G RG+++TRALLG A E+HLCG+ VPLI+++ +TG
Sbjct: 1 MAPLGQEVDVAVIDEIQMIGDLHRGWAWTRALLGAPAKEVHLCGEERVVPLIRELAALTG 60
Query: 211 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 269
D + + Y+RL+PL+P++ L GS +Q GDC+V FSR I+ LK+ IE +IV
Sbjct: 61 DKLTIHHYKRLNPLIPMSKSLKGSLRGLQKGDCVVAFSRLGIHALKQEIEKATGRRAAIV 120
Query: 270 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLT 329
YGSLP E R++QA FND ++++D LVASDAIGMGLNL+ RIIF ++ K L+ L+
Sbjct: 121 YGSLPAEIRSQQADLFNDPNNDYDFLVASDAIGMGLNLSCKRIIFESVIKRSPSGLQRLS 180
Query: 330 VPEVKQIAGRAGRYGSKFP--------------VGEVTCLDSEDLPLLHKSL-LEPSPML 374
V +VKQI GRAGRY S VG VTCL+ DLP + K L +P P +
Sbjct: 181 VSQVKQIGGRAGRYRSAAEAIDSSLSPSEENQNVGLVTCLEEVDLPHIQKCLNADPEP-I 239
Query: 375 ESAGLFPNFDLIYMYS-RLHPDSSLYGILEHFLENAKLSENYFFANCE-EVLKVATVIDQ 432
+AG+ P +I +S R P + +L+ + A+ +F CE + V ++D
Sbjct: 240 SAAGILPLDSMILNFSNRFPPTTPFAYLLQRLWKVAQTHPRFFL--CELQSKTVQEILDS 297
Query: 433 -LPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPGLGSLRVAEFP 491
+ L +K +F +P D ++ L FAT ++ L +I P L +L++ + P
Sbjct: 298 VVGLSPADKLVFLSAPTSTADPTNALTLRAFATCVARHTSGSLLDI--PEL-NLQILDAP 354
Query: 492 V 492
V
Sbjct: 355 V 355
>gi|433445404|ref|ZP_20409812.1| helicase [Anoxybacillus flavithermus TNO-09.006]
gi|432001102|gb|ELK21986.1| helicase [Anoxybacillus flavithermus TNO-09.006]
Length = 893
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 113/268 (42%), Positives = 174/268 (64%), Gaps = 3/268 (1%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQER 136
+K ++HVGPTNSGKT+ ++ RL + +G+Y PLRLLA E + + ++C LITG+ER
Sbjct: 404 KKYVVHVGPTNSGKTYDSMQRLLQAKTGMYLAPLRLLALEKFEEMCSHGIACALITGEER 463
Query: 137 EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDP 196
+ V G+ H + TVE +V +++ VIDE Q+L +TRG ++ +A++G A E+HL P
Sbjct: 464 KNVHGSTHISATVESVNVNEEFEVVVIDECQLLADETRGAAWVKAIIGAKAKEIHLVVAP 523
Query: 197 AAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKK 256
AV L+Q +L D +V ++R +PL+ +++Q GD ++ FS+ + +
Sbjct: 524 HAVGLLQTLLTYHQFDFEVIEHKRTTPLIWEEKDFSFPNDLQKGDALIVFSKKNVLHVAA 583
Query: 257 AIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFST 316
++ RG ++ S++YGS+PPETR +Q +F + D+L+A+DAIGMG+NL I R+IF
Sbjct: 584 SLVKRGYNV-SVLYGSMPPETRRKQVRQFRKGLT--DILIATDAIGMGMNLPIRRVIFME 640
Query: 317 MKKFDGVELRDLTVPEVKQIAGRAGRYG 344
KKFDG +R L EV+QIAGRAGR G
Sbjct: 641 SKKFDGKAVRTLKAEEVQQIAGRAGRKG 668
>gi|392900738|ref|NP_001255542.1| Protein C08F8.2, isoform c [Caenorhabditis elegans]
gi|320202869|emb|CBZ01775.1| Protein C08F8.2, isoform c [Caenorhabditis elegans]
Length = 438
Score = 228 bits (580), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 121/300 (40%), Positives = 186/300 (62%), Gaps = 5/300 (1%)
Query: 168 MLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPL 227
ML + RG+++TRALLG A+E+HLCG+PAA+ +++++L+ G+ V+V+ YER SPL
Sbjct: 1 MLRDEQRGWAWTRALLGAAADEIHLCGEPAAIDIVKKLLEPIGETVEVRYYERKSPLAIA 60
Query: 228 NVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFND 287
+ + S+SNI+ GDCIV FS+ +I+ K +E G +++YG LPP T+ QA +FND
Sbjct: 61 DKAIESYSNIEPGDCIVCFSKRSIFFNSKKLEENGIK-PAVIYGDLPPGTKLAQAAKFND 119
Query: 288 ASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKF 347
E +VLVA+DAIGMGLNLNI R+IF++ + EL L QIAGRAGR+G+ +
Sbjct: 120 PDDECNVLVATDAIGMGLNLNIRRVIFNSCTR--QTEL--LPTYAALQIAGRAGRFGTAY 175
Query: 348 PVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLE 407
G T + EDL L L E + + G+ P +D I +S P +S +L+ F+
Sbjct: 176 ANGVATTMRKEDLGTLKAILSEKIEPIANVGIAPTYDQIETFSFHLPQASFVRLLDLFVS 235
Query: 408 NAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYS 467
+S+++F ++ ++A +IDQ+PL L +Y FC SP++ D +S + A +S
Sbjct: 236 VCSVSDHFFICTVYDMRELAVLIDQIPLPLKVRYTFCTSPLNTEDKRTSAVFVKMARRFS 295
>gi|68075671|ref|XP_679755.1| ATP-dependent DEAD box helicase [Plasmodium berghei strain ANKA]
gi|56500573|emb|CAH94648.1| ATP-dependent DEAD box helicase, putative [Plasmodium berghei]
Length = 905
Score = 227 bits (578), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 144/397 (36%), Positives = 216/397 (54%), Gaps = 60/397 (15%)
Query: 58 DFTDLTRPHTWYPLARKKV----RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLL 113
DFT++ RKK RK+ L+VGPTNSGKTH+A ++ S +G+YC PLRLL
Sbjct: 173 DFTEINE-------IRKKKNNLNRKLYLYVGPTNSGKTHEAFNKFIDSKNGLYCSPLRLL 225
Query: 114 AWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKT 173
WE+ K+L + +L+TGQE + H T+EM + YDCA+IDEIQM+
Sbjct: 226 TWEIHKKLLNLKKNTNLLTGQEIIKKANNTHTVCTIEMTPLNEKYDCAIIDEIQMINNSI 285
Query: 174 RGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL-VPLNV-PL 231
RG+++T L+ + E++LCG V LI+++ + D V ++ ++RL+ L + NV PL
Sbjct: 286 RGYAWTNVLMNLKCEEIYLCGSEHIVNLIKELSDILHDQVIIKRFKRLNKLKLEENVQPL 345
Query: 232 GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFN----- 286
G ++TGDCI++FSR+ I LKK +E K + ++YG+LPPE++ +Q FN
Sbjct: 346 GD---VKTGDCIISFSRNNIMLLKKKLEKLNKRVF-VIYGTLPPESKKKQIELFNYYCKQ 401
Query: 287 -------------------------------DASSEFDVLVASDAIGMGLNLNISRIIFS 315
+ + VLVA+D IGMGLN+ I RIIF
Sbjct: 402 IKNDCDNIKLERNNDEQNIKNEIHRAENSNHENHKKETVLVATDVIGMGLNIKIRRIIFY 461
Query: 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGS----KFPVGEVTCLDSEDLPLLHKSLLEPS 371
++KK+DG +R L V E+ QIAGRAGR+ G VTC++ ED+ +L K++ E
Sbjct: 462 SLKKYDGDIIRYLNVSEILQIAGRAGRFDENDSGNSSDGFVTCVNFEDIKIL-KNIFENK 520
Query: 372 PMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLEN 408
+ + G N + Y + DS +++ L N
Sbjct: 521 NVKKLIG--NNDENYYELHNTNEDSDSNNLIDQHLGN 555
Score = 38.5 bits (88), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 377 AGLFPNFDLIYMYSRL-----HPDSSLYGILEHFLENAKLSENYFF--ANCEEVLKVATV 429
AG FPNFD I S++ LY IL+ ++ KL+++YFF N +++ +A
Sbjct: 614 AGYFPNFDTIENLSKILEFEYKAKIELYEILQILIDYLKLNDSYFFLTKNYNQIIFIAKF 673
Query: 430 IDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLRE 476
+ + + + +++ ISPV++N+ I L F ++S G V E
Sbjct: 674 LKNINIDKNILFIYAISPVNINNVIMINILRTFIMSHSILGYVDFFE 720
>gi|403234635|ref|ZP_10913221.1| helicase [Bacillus sp. 10403023]
Length = 828
Score = 225 bits (574), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 141/367 (38%), Positives = 205/367 (55%), Gaps = 30/367 (8%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
Y L+ + + +L+VG TN+GKT QA+ R++ ++SGIY PLRLLA E+ + LN+ + C
Sbjct: 341 YHLSPGRNIQYVLYVGETNTGKTFQAIQRMKEATSGIYLAPLRLLALEIYETLNEDGIPC 400
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
+L TG+E + V+GA H + TVEM YD VIDE QM+ K RGFS+ +A+ A
Sbjct: 401 NLKTGEEEKVVEGANHSSATVEMLREKDFYDVIVIDEAQMIADKDRGFSWYKAITNANAK 460
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
E+H+ A +I Q+L +V+V Y R PL + L + + GD +V FSR
Sbjct: 461 EVHIICSFHAKWMILQLL--GNSNVEVHEYHRDVPL-EVEPQLFRLNQTRKGDALVCFSR 517
Query: 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308
+ ++ G+ + S++YGS+PPETR +Q RFN+ E V+VA+DAIGMGLNL
Sbjct: 518 RRVLETASELQRSGRRV-SMIYGSMPPETRKKQIQRFNNG--ETTVIVATDAIGMGLNLP 574
Query: 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT----------CLDSE 358
I RI+F KFDG R LT EVKQIAGRAGR G + +G+V L+ E
Sbjct: 575 IRRIVFLENDKFDGTRRRLLTSQEVKQIAGRAGRRGI-YDIGKVAFTSDIKTMTRLLEQE 633
Query: 359 DLPLLHKSLLEPSPMLESAGLFPNFDLIYMY-------------SRLHPDSSLYGILEHF 405
D PL ++ + +LE + ++ Y + L+ + LY ++E
Sbjct: 634 DAPLQGFAIAPTNAVLERFQKYSRKMRMFFYLWDQFRSPEGTKKASLYEERMLYELVEDT 693
Query: 406 LENAKLS 412
+ AKLS
Sbjct: 694 IIEAKLS 700
>gi|152992621|ref|YP_001358342.1| hypothetical protein SUN_1028 [Sulfurovum sp. NBC37-1]
gi|151424482|dbj|BAF71985.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
Length = 938
Score = 224 bits (572), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 139/395 (35%), Positives = 225/395 (56%), Gaps = 13/395 (3%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
DF +L +PLAR+ RK++ HVGPTNSGKT+ AL L+ +++G Y PLRLLA E
Sbjct: 421 DFKNL------FPLARELKRKIVFHVGPTNSGKTYTALQELKEATTGYYLAPLRLLALEG 474
Query: 118 AKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
+ L K V L+TG+E + + H + T+EM + D D VIDEIQM+ + RG++
Sbjct: 475 YENLKKEGVHVSLVTGEEEIIDEESTHISSTIEMMNNAVDVDVCVIDEIQMISDRDRGWA 534
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNI 237
+ AL+G A ++ L G A+ ++ + + G++++V +ER + LV + PL S I
Sbjct: 535 WANALIGAPAKKVILTGSANALHAVEALCEYLGEELEVVHFERKNELVTMKHPL-SMKKI 593
Query: 238 QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 297
+ +V FSR + LK+ + R + S+VYG+L PE R +A RF + S+ +LV+
Sbjct: 594 EPQTAVVAFSRREVLSLKQQLSER--YSVSVVYGNLSPEVRREEARRFREGESQ--ILVS 649
Query: 298 SDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357
+DAI MGLNL I ++F+ KFDG+ R+L EV+QIAGRAGRYG + G V LD+
Sbjct: 650 TDAIAMGLNLPIKTLLFAKDNKFDGLRRRELLPTEVQQIAGRAGRYGFE-EKGYVGALDT 708
Query: 358 EDLPLLHKSLLEPSPMLE-SAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYF 416
L + K+ P +E + + + + + + ++ IL F +N + +
Sbjct: 709 AALDTVSKAFHAPLADIELPVSVMASLEHVMLIGEILETENITTILGFFADNMEFDGPFM 768
Query: 417 FANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMN 451
AN + +L++A ++D+ L L ++ +P ++
Sbjct: 769 AANIDSMLEIAAIVDEYDLDLKTRFYLSCAPASIS 803
>gi|384173494|ref|YP_005554871.1| ATP-dependent RNA helicase [Arcobacter sp. L]
gi|345473104|dbj|BAK74554.1| ATP-dependent RNA helicase [Arcobacter sp. L]
Length = 523
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 142/416 (34%), Positives = 230/416 (55%), Gaps = 18/416 (4%)
Query: 67 TWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANV 126
T YPLAR RK+ +VGPTNSGKT+ A+ +L+ ++SG+Y PLRLLA E + L ++ +
Sbjct: 19 TLYPLARSLNRKLEFYVGPTNSGKTYNAMQKLKEANSGLYLAPLRLLALEGYEDLKESKI 78
Query: 127 SCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC 186
+ LITG+E+ + A H T+EM D D D AVIDE+QML RG+++ A++G
Sbjct: 79 NASLITGEEQMLDEEAAHVCSTIEMLDFDLDVDVAVIDEVQMLEDPDRGWAWVNAIIGCP 138
Query: 187 ANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF 246
A ++ + G A+ I++I G+++++ ++R + L L S ++ G ++ F
Sbjct: 139 AKKIIMTGSVNALDAIKRIATYLGEELEIIKHQRKNELKVLP-KWTSLEKLEDGTALIAF 197
Query: 247 SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 306
SR + LK + + K+ S++YG+L PE R +A RF + ++ +L+A+DAI MGLN
Sbjct: 198 SRSDV--LKLKQKLQKKYSVSVIYGNLSPEVRRDEAKRFREKKTQ--ILIATDAIAMGLN 253
Query: 307 LNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKS 366
L I I+F+T +KFDG R +TV E+ QIAGRAGRYG F G + + L + +
Sbjct: 254 LPIKTILFTTDEKFDGKSRRKITVNEIVQIAGRAGRYGH-FEAGYLGATRRDVLAYIAQE 312
Query: 367 LLEPSPMLESAGLFPNFDLIYMYSRLH------PDSSLYGILEHFLENAKLSENYFFANC 420
P ++ P F + ++L +SL +L+ F +N S + AN
Sbjct: 313 FESPIRTIK-----PPFKVKINNNQLESLASHIKTNSLTKVLKFFADNMYFSGPFRAANI 367
Query: 421 EEVLKVATVID-QLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLR 475
+L+ A ++D + L+L +KYL +P+ I Q + + KK + +
Sbjct: 368 SSMLEAAKIVDTRFNLKLEDKYLLAQAPITTKSTIILQAYESYIASVIKKRVCHYK 423
>gi|89097581|ref|ZP_01170470.1| probable ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
gi|89087877|gb|EAR66989.1| probable ATP-dependent RNA helicase [Bacillus sp. NRRL B-14911]
Length = 860
Score = 224 bits (570), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 131/322 (40%), Positives = 190/322 (59%), Gaps = 27/322 (8%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE 137
K +LH+G TN+GKT AL ++ + SGIY PLRLLA EV +LN + C L TG+E +
Sbjct: 374 KYVLHIGDTNTGKTFHALESMKKADSGIYLAPLRLLALEVYDKLNGEAIPCTLKTGEEEK 433
Query: 138 EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 197
GA H A TVEM +D AVIDE QM+ K RGFS+ +A+ A+E+H+ G +
Sbjct: 434 VTPGASHFASTVEMFSEKERFDIAVIDEAQMITDKDRGFSWYKAITKANASEVHIIGSKS 493
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF--SNIQTGDCIVTFSRHAIYRLK 255
+ ++ Q+L+ G D+++ Y R +PL+ V F + + GD ++ FSR +
Sbjct: 494 SQSILLQLLE--GTDLEIHEYHRDTPLI---VEPDEFRLKHSRKGDALICFSRKRVLETA 548
Query: 256 KAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFS 315
+++ G+ + S++YGS+PPETR +Q RF D E +++V++DAIGMGLNL I R++F
Sbjct: 549 SRLQNDGRSV-SMIYGSMPPETRKKQVQRFIDG--ETNIIVSTDAIGMGLNLPIRRVVFL 605
Query: 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV----------TCLDSEDLPLLHK 365
+KFDGV R LT EVKQIAGRAGR G + G V + L+ ED P +H
Sbjct: 606 ENEKFDGVSRRQLTSQEVKQIAGRAGRKGL-YNTGRVAFMENIKEMGSLLEQEDDP-VHT 663
Query: 366 SLLEPSPMLESAGLFPNFDLIY 387
+ P ++G+F F Y
Sbjct: 664 FSIAP-----TSGVFDRFQKYY 680
>gi|429765880|ref|ZP_19298160.1| helicase protein [Clostridium celatum DSM 1785]
gi|429185733|gb|EKY26707.1| helicase protein [Clostridium celatum DSM 1785]
Length = 912
Score = 223 bits (568), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/288 (40%), Positives = 175/288 (60%), Gaps = 13/288 (4%)
Query: 62 LTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL 121
L P Y AR+ R LHVG TN+GKT+ ++ RL + SG+Y PLRLLA E+ +L
Sbjct: 390 LDNPINEYKEAREMKRHFYLHVGETNTGKTYSSIERLMEAESGVYLAPLRLLALEIQDKL 449
Query: 122 NKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRA 181
N N+ C L+TG+E + + A H + T+E ++ + YD VIDE QM+ RG+++TRA
Sbjct: 450 NSQNIRCSLLTGEEEDIISYAYHVSSTIEKLELGTYYDVCVIDEAQMIADNQRGWAWTRA 509
Query: 182 LLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGD 241
++G+ + E+H+C P A +I +++ GD +V ++R + L+ + +++ GD
Sbjct: 510 IIGVLSPEIHICMAPEAKDIIIKLINDCGDTYEVIEHKRDTELIFEDKKFDLNKDVKKGD 569
Query: 242 CIVTFSRHAIYRLKKAIESRGKHL-----CSIVYGSLPPETRTRQATRFNDASSEFDVLV 296
+V F + +KA+ + L SI+YGSLP TR +Q RF S E +V+V
Sbjct: 570 ALVVFGK------RKALAVSAQLLNNNIKTSIIYGSLPYSTRKKQFERF--LSGETEVIV 621
Query: 297 ASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
+DAIGMG+NL I RI+F +K+DGV LR L + E+KQIAGRAGR G
Sbjct: 622 CTDAIGMGVNLPIKRIVFLETRKYDGVSLRKLNIAEIKQIAGRAGRRG 669
>gi|410456673|ref|ZP_11310531.1| helicase [Bacillus bataviensis LMG 21833]
gi|409927715|gb|EKN64844.1| helicase [Bacillus bataviensis LMG 21833]
Length = 860
Score = 222 bits (565), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 127/328 (38%), Positives = 190/328 (57%), Gaps = 14/328 (4%)
Query: 70 PLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD 129
P ++ VR +LH+G TN+GKTH AL +++ + SG+Y PLRLLA EV +LN C
Sbjct: 367 PSLKRHVR-YVLHIGETNTGKTHHALEQMKEAESGLYLAPLRLLALEVFDKLNAEGTPCS 425
Query: 130 LITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE 189
L TG+E + V GA+H + TVEM Y+ VIDE QM+ K RGFS+ +A+ A E
Sbjct: 426 LKTGEEEKMVAGAQHISCTVEMFHEKEVYEVVVIDEAQMITDKDRGFSWYKAITKANARE 485
Query: 190 LHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF--SNIQTGDCIVTFS 247
+H+ G + ++ ++L D+++ Y R + PL V F +++ GD ++ FS
Sbjct: 486 VHIIGSRNSKTMLLELL--GNADIEIHEYSRDT---PLEVEKKEFHIKHVKKGDALICFS 540
Query: 248 RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307
R + +++ G H S++YGS+PPETR +Q +FN ++ V+V++DAIGMGLNL
Sbjct: 541 RRRVLETASRLQNDG-HSVSMIYGSMPPETRKKQIEQFNKGRTK--VIVSTDAIGMGLNL 597
Query: 308 NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSL 367
I RI+F KFDG R LT EVKQIAGRAGR G + VG+V + D+ + L
Sbjct: 598 PIRRIVFLENDKFDGTRRRLLTSQEVKQIAGRAGRKGI-YDVGKVAF--TSDIRKMQNLL 654
Query: 368 LEPSPMLESAGLFPNFDLIYMYSRLHPD 395
L+ + + + P + + R + D
Sbjct: 655 LQEDEPVHTFAIAPTNSVFERFQRYYHD 682
>gi|389584589|dbj|GAB67321.1| ATP-dependent DEAD box helicase, partial [Plasmodium cynomolgi
strain B]
Length = 586
Score = 221 bits (564), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 125/305 (40%), Positives = 180/305 (59%), Gaps = 31/305 (10%)
Query: 89 GKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVT 148
GKT++A L SS+G+YC PLR+LAWE+ K+L K N L+TGQE + A H T
Sbjct: 1 GKTYEAFQSLCKSSNGLYCAPLRILAWEIHKKLIKLNKITSLLTGQELIKKKNATHTVCT 60
Query: 149 VEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV 208
VEM + YDC VIDEIQM+ TRG ++T LL + E++LCG + L++++ +
Sbjct: 61 VEMTPLDRQYDCVVIDEIQMINHDTRGCAWTNVLLNLDCEEIYLCGSDNIISLVKKLADL 120
Query: 209 TGDDVKVQSYERLSPL-VPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCS 267
D + ++ +ERL+ L V N + ++TGDC++TFSR++I LK +E K +
Sbjct: 121 LEDQLIIKRFERLTDLHVEENTV--EWEKLKTGDCVITFSRNSIMLLKNRLERLNKRV-F 177
Query: 268 IVYGSLPPETRTRQATRFNDASS------EFD------------------VLVASDAIGM 303
++YGSLPPE + Q FN + E D +L+A+D IGM
Sbjct: 178 VIYGSLPPEIKRMQVESFNRCCAGEGSIGEADENEKAELPPSTCDKKKQTILIATDVIGM 237
Query: 304 GLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY--GSKFPV-GEVTCLDSEDL 360
G+N+NI RIIF +++KFDG LR L EV QIAGRAGRY G + P+ G VTC+ + DL
Sbjct: 238 GVNINIRRIIFYSLQKFDGDRLRHLYASEVLQIAGRAGRYHHGIREPITGYVTCVYAHDL 297
Query: 361 PLLHK 365
++ +
Sbjct: 298 SIIKR 302
Score = 44.3 bits (103), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 9/140 (6%)
Query: 333 VKQIAGRAGRYGSKFPVGEVTCLDSEDL--PLLHKSLLEPSPMLESAGLFPNFDLIYMYS 390
V Q +G P + L + PLL + + AG FP+F++I
Sbjct: 362 VSQHNAHVALFGEITPSSKGNILKNSHFVDPLLFQQRERKNNTCTKAGFFPDFNMINKLK 421
Query: 391 RL-----HPDSSLYGILEHFLENAKLSENYFF--ANCEEVLKVATVIDQLPLRLHEKYLF 443
++ L+ I+ ++ AKL+E+YFF N +++ +A + + L +++
Sbjct: 422 KMLEYEHKAKVELHEIMSILVDYAKLNEDYFFLTKNYNQMILIAKFLKDIKLDSETLFVY 481
Query: 444 CISPVDMNDDISSQGLTQFA 463
+SP+++ND L FA
Sbjct: 482 TLSPINVNDINMLTTLRTFA 501
>gi|255600329|ref|XP_002537436.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
gi|223516363|gb|EEF24947.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
Length = 427
Score = 221 bits (563), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 127/299 (42%), Positives = 180/299 (60%), Gaps = 12/299 (4%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+ LAR+ R+ +VGPTNSGKT+QAL L ++SG+Y PLRLLA EV RL +A + C
Sbjct: 13 FTLARQLGRQHHFYVGPTNSGKTYQALETLRQAASGVYLAPLRLLAMEVRDRLMQAGIPC 72
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
+L+TG+ER V GAKH A T+EM + AVIDEIQML RG ++T AL+G+ A
Sbjct: 73 NLVTGEERVMVPGAKHTASTIEMLRPDMAVEVAVIDEIQMLMDPDRGSAWTAALVGVPAK 132
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS--------FSNIQTG 240
++ +CG + ++L + + +R++PL+ + + +Q G
Sbjct: 133 QVFICGANSVTESCTRVLDALNEPYTLTHLQRMTPLLIEDHSICGARYHAAKLHKALQPG 192
Query: 241 DCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 300
D I+ FSR + L I G + +I YG+L PE R ++ RF AS E +LVA+DA
Sbjct: 193 DAIIAFSRKDVLTLAARIRQWGLSVATI-YGALSPEVRRGESARF--ASGEAQILVATDA 249
Query: 301 IGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359
IGMGLNL I R+IF+ + KFDGV R L E++QIAGRAGR+G + G VT L+ ++
Sbjct: 250 IGMGLNLPIRRVIFANIHKFDGVAPRPLNATEMRQIAGRAGRHG-LYDTGYVTVLEDDE 307
>gi|238922272|ref|YP_002935786.1| adenosinetriphosphatase [Eubacterium eligens ATCC 27750]
gi|238873944|gb|ACR73652.1| adenosinetriphosphatase [Eubacterium eligens ATCC 27750]
Length = 543
Score = 221 bits (562), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 122/298 (40%), Positives = 179/298 (60%), Gaps = 6/298 (2%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
YP AR R ILH+G TN+GKTH AL ++ SG+Y PLRLLA E+ + ++C
Sbjct: 42 YPEARNIKRHFILHIGETNTGKTHDALEDFYNAGSGMYLAPLRLLALEIQEMSLARGINC 101
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
L TG+E++ DGAKH + TVE D+ +D VIDE QM+ RG+++T A+LG+ A+
Sbjct: 102 SLTTGEEKDIRDGAKHLSCTVEKMDMSRHFDVCVIDEAQMVADSDRGWAWTEAILGVNAD 161
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
+H+C P A+ +++ ++++ GD ++R S L+ + +I+ GD +V+FSR
Sbjct: 162 VVHVCMSPNAIHIVKMLIKMCGDTYTDIRHKRNSRLIVEDHDFIFPDDIRDGDALVSFSR 221
Query: 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308
+ L ++ G + S++YGSLP R + RF + S ++V +DAIGMG+NL
Sbjct: 222 RKVLMLATLLKKEG-YKVSVIYGSLPYSVRKAEVARFLNGESR--IVVCTDAIGMGVNLP 278
Query: 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL--PLLH 364
I RIIF+ KKFDG R L + EVKQIAGRAGR G + G V ++ D LLH
Sbjct: 279 IRRIIFTESKKFDGKSKRFLNMSEVKQIAGRAGRKGM-YDQGYVNSIEDRDQIGELLH 335
>gi|296274442|ref|YP_003657073.1| helicase domain-containing protein [Arcobacter nitrofigilis DSM
7299]
gi|296098616|gb|ADG94566.1| helicase domain protein [Arcobacter nitrofigilis DSM 7299]
Length = 512
Score = 221 bits (562), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 138/414 (33%), Positives = 226/414 (54%), Gaps = 18/414 (4%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
YPLAR R++ VGPTNSGKT++A++ L+ + G+Y PLRLLA E + L K +
Sbjct: 21 YPLARTMKRELHFFVGPTNSGKTYKAMTELKKADCGLYLAPLRLLALEGYEDLTKEGIPA 80
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
LITG+E+ + A H T+EM D D D A+IDE+QML RG+++ A++G A
Sbjct: 81 SLITGEEQNLNEDAAHVCSTIEMIDFNMDVDVAIIDEVQMLDDDDRGWAWVNAIIGCPAK 140
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
++ + G A+ +++I +D+ ++ ++R + L L+ + N+++G ++ FSR
Sbjct: 141 KIIMTGSVNALEAVKKIAAYLEEDLIIEKFKRKNELELLD-KHTALGNLESGTALIAFSR 199
Query: 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308
+ LK + + KH SI+YG+L PE R +A RF D E D+L+A+DAI MGLNL
Sbjct: 200 SDV--LKLKQKLQKKHKISIIYGNLSPEVRRDEARRFRD--KETDILIATDAIAMGLNLP 255
Query: 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL 368
I I+F+T KFDG+ R ++V E+ QIAGRAGRYG G + + L + +
Sbjct: 256 IKTILFTTHMKFDGISRRGISVNEIVQIAGRAGRYGH-HEKGFIGATTKDSLKYIKEEYS 314
Query: 369 EPSPMLESAGLFPNFDLIYMYSRLH------PDSSLYGILEHFLENAKLSENYFFANCEE 422
+P ++ P F + +L +SL +L+ F N + AN
Sbjct: 315 QPIKTIK-----PPFKVKINNEQLTSLAMHLKTTSLTKVLKFFSTNMVFEGPFIAANIGS 369
Query: 423 VLKVATVIDQ-LPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLR 475
++ +T++DQ L+L +KY+ +P+ + I Q + + K +++ +
Sbjct: 370 MISASTIVDQKFNLKLEDKYMLAQAPISVKSKIILQAYDIYISAVLKNRVIRYK 423
>gi|386284065|ref|ZP_10061288.1| hypothetical protein SULAR_02418 [Sulfurovum sp. AR]
gi|385344968|gb|EIF51681.1| hypothetical protein SULAR_02418 [Sulfurovum sp. AR]
Length = 938
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 138/395 (34%), Positives = 225/395 (56%), Gaps = 13/395 (3%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
DF +L +PLAR+ RK+I HVGPTNSGKT+ A+ L+++++G Y PLRLLA E
Sbjct: 422 DFKNL------FPLARELKRKIIFHVGPTNSGKTYAAMQELQTATTGYYLAPLRLLALEG 475
Query: 118 AKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
+ L K +++ LITG+E + + H + T+EM + D D VIDEIQM+ + RG++
Sbjct: 476 YENLKKEDIAVSLITGEEEILDEESTHISSTIEMMNGSVDVDVCVIDEIQMIADRDRGWA 535
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNI 237
+ AL+G+ A ++ L G A+ ++++ + +++++ +ER + L L P S +I
Sbjct: 536 WANALIGVPARKVILTGSSDALHAVKELCEYLDEELEIVHFERKNELTMLPNP-TSMKHI 594
Query: 238 QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 297
+ +V FSR + LK+ + K+ S+VYG+L PE R +A RF + S+ +LVA
Sbjct: 595 EPQTAVVAFSRRDVLSLKQQLSE--KYSVSVVYGNLSPEVRREEARRFREGESQ--ILVA 650
Query: 298 SDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357
+DAI MGLNL I ++FS KFDG+ R+L EV QI+GRAGRYG + G V LD
Sbjct: 651 TDAIAMGLNLPIKTLLFSKDNKFDGLRRRELLPTEVLQISGRAGRYGFE-EKGYVGALDE 709
Query: 358 EDLPLLHKSLLEPSPMLE-SAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYF 416
L + + P P L+ + + + + + + ++ IL F EN + +
Sbjct: 710 TALDTITSAFHMPLPDLKLPVSVMASLEHVMLIGEILETDNILDILAFFSENMEFEGPFV 769
Query: 417 FANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMN 451
AN + +L++A ++ + L L +Y +P ++
Sbjct: 770 AANIDSMLEIAAIVSEYSLDLKTRYYLSCAPASIS 804
>gi|311032935|ref|ZP_07711025.1| helicase domain-containing protein [Bacillus sp. m3-13]
Length = 862
Score = 220 bits (560), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 121/276 (43%), Positives = 171/276 (61%), Gaps = 9/276 (3%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE 137
+ ++H+G TN+GKT QAL R++ + SG+Y PLRLLA EV LN V C L TG+E +
Sbjct: 374 RYVIHIGETNTGKTFQALQRMKEAKSGLYLAPLRLLALEVYDTLNSDGVPCSLKTGEEEK 433
Query: 138 EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 197
GA H + TVEM Y+ VIDE QM+ K RGFS+ +A+ A+E+H+ G
Sbjct: 434 LSPGASHFSSTVEMFYEKDHYEVIVIDEAQMIADKDRGFSWYKAITKANADEVHIVG--- 490
Query: 198 AVPLIQQILQVTGD-DVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKK 256
+ + + +LQ+ G+ +++ Y R +PL + P + + + GD +V FSR +
Sbjct: 491 SFSMREMVLQLLGNAAIEINEYTRDTPLQVEDRPF-TLRDTKRGDALVCFSRKRVLETAS 549
Query: 257 AIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFST 316
+++ G H S++YGS+PPETR +Q RF D E V+VA+DAIGMGLNL I R++F
Sbjct: 550 ILQNNG-HQVSMIYGSMPPETRKKQMQRFIDG--ETTVIVATDAIGMGLNLPIRRVVFLQ 606
Query: 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV 352
+KFDG R LT EVKQIAGRAGR G + VG+V
Sbjct: 607 NEKFDGTRRRRLTSQEVKQIAGRAGRKGM-YDVGKV 641
>gi|410460159|ref|ZP_11313842.1| helicase [Bacillus azotoformans LMG 9581]
gi|409927389|gb|EKN64525.1| helicase [Bacillus azotoformans LMG 9581]
Length = 847
Score = 219 bits (559), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 130/276 (47%), Positives = 170/276 (61%), Gaps = 9/276 (3%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE 137
+ ILHVG TN+GKT QA+ ++++ SGIY PLRLLA+E+ +LN+ V C L TG+E +
Sbjct: 358 QYILHVGETNTGKTFQAIENMKAAKSGIYLAPLRLLAFEIYDKLNEEGVPCSLKTGEEEK 417
Query: 138 EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 197
V A H + TVEM YD VIDE QML K RGFS+ +A+ A E+H+
Sbjct: 418 VVTDATHFSCTVEMFHEKDYYDVVVIDEAQMLADKDRGFSWYKAITKAKAKEVHIICSFN 477
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
A +I +L + DV V Y R PL + L ++ + GD +V FSR + L+ A
Sbjct: 478 AKSMILDLLGES--DVDVFEYRRDIPL-EVEQHLFRLNDTRKGDALVCFSRRQV--LETA 532
Query: 258 IE-SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFST 316
E RGK S++YGS+PPETR +Q RF + E V+VA+DAIGMGLNL I RI+F
Sbjct: 533 SELQRGKRKVSMIYGSMPPETRKKQMQRF--LNGETTVIVATDAIGMGLNLPIRRIVFLE 590
Query: 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV 352
+KFDG R LT EVKQIAGRAGR G + VG+V
Sbjct: 591 NEKFDGTRRRRLTSQEVKQIAGRAGRKGI-YDVGKV 625
>gi|452747268|ref|ZP_21947065.1| ATP-dependent RNA helicase [Pseudomonas stutzeri NF13]
gi|452008789|gb|EME01025.1| ATP-dependent RNA helicase [Pseudomonas stutzeri NF13]
Length = 786
Score = 219 bits (557), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 141/408 (34%), Positives = 219/408 (53%), Gaps = 13/408 (3%)
Query: 66 HTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN 125
H YP AR+ R+ I +GPTNSGKTH+++ + ++ IY PLRL+A E +R+
Sbjct: 304 HKLYP-ARRLTRRWIALLGPTNSGKTHRSIEAMAAAEHAIYLSPLRLMALENQERIESMG 362
Query: 126 VSCDLITGQEREEVDGAKHRAVTVEMADVV--SDYDCAVIDEIQMLGCKTRGFSFTRALL 183
V C L+TG+E +GA H TVE +D V+DE+QM+ RG+++ AL+
Sbjct: 363 VPCSLVTGEEEIIREGATHFCCTVEEFARFRHQHWDVVVVDEVQMMADPQRGWAWVDALV 422
Query: 184 GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCI 243
+L + G P ++ + ++ D ++VQ +RLSP V ++ + ++ G +
Sbjct: 423 SAHTPKLMMTGPALIEPSLRTLCELCEDQLQVQRTKRLSP-VEVSKHATTLERLEPGSLL 481
Query: 244 VTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM 303
V FSR + LK +ES GK + S+VYG+L PE R QA RF + E D++VA+DA+GM
Sbjct: 482 VAFSRKLVLELKGMLESAGKSV-SVVYGALSPEVRREQARRFREG--EADIMVATDAVGM 538
Query: 304 GLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLL 363
GLNL + F T +KFDG++ R L V EVKQI GRAGR+G GE+T LD + L +
Sbjct: 539 GLNLPAHTLCFYTDEKFDGIQNRQLKVQEVKQIGGRAGRFGHH-DSGEITALDPQTLKSI 597
Query: 364 HKSLLEP-SPM-LESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCE 421
+ P +P+ L + P+ D + S L + SL F N E + +
Sbjct: 598 RRLFNSPDAPVDLSQFQVRPSIDHLSAISELMGEPSLLRAWLTFNRNINYGEAFISVLPD 657
Query: 422 EVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK 469
E+ + +ID + L ++ F +P+ D + +Q A + K+
Sbjct: 658 ELAEWIELIDDPKIPLWLRWTFACTPIRGGFDSPA---SQHAQRWIKR 702
>gi|294499021|ref|YP_003562721.1| helicase domain-containing protein [Bacillus megaterium QM B1551]
gi|294348958|gb|ADE69287.1| helicase domain protein [Bacillus megaterium QM B1551]
Length = 869
Score = 218 bits (556), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 128/329 (38%), Positives = 191/329 (58%), Gaps = 13/329 (3%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
Y + +K + ILH+G TN+GKT+ AL L+ ++SG Y PLRLLA EV ++LNK V C
Sbjct: 375 YEMDPRKETEYILHLGDTNTGKTYTALKSLKKAASGSYLAPLRLLALEVFEKLNKDRVPC 434
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
L TG+E + V+ A+H A TVEM + D VIDE QM+ + RGFS+ +A+ A
Sbjct: 435 SLKTGEEEKIVEDAQHMAGTVEMFSELEHGDVTVIDEAQMIQDRDRGFSWYKAITRANAK 494
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF--SNIQTGDCIVTF 246
++H+ G + +++++L G ++ YER +PL V L F ++ D ++ F
Sbjct: 495 QVHVIGSLSIRSMLEEMLD--GVISEIHEYER---DIPLKVDLRRFKIEQVKPADALIVF 549
Query: 247 SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 306
SR + + +E G H S++YGS+PPETR +Q +F + E +V+V++DAIGMGLN
Sbjct: 550 SRKKVLQTAAKLEKDG-HKVSVIYGSMPPETRRKQIEQF--INRETNVIVSTDAIGMGLN 606
Query: 307 LNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKS 366
L I RI+ KFDG + R LT E+KQIAGRAGR G + VGEV ++D + +
Sbjct: 607 LPIRRIVLLENMKFDGQKRRLLTSQELKQIAGRAGRKGL-YNVGEVAF--AKDAKQMREL 663
Query: 367 LLEPSPMLESAGLFPNFDLIYMYSRLHPD 395
L + + P D++ + H D
Sbjct: 664 LFSTDEQISKFSIAPTSDMLRRFKEYHHD 692
>gi|384047152|ref|YP_005495169.1| ATP-dependent RNA helicase [Bacillus megaterium WSH-002]
gi|345444843|gb|AEN89860.1| putative ATP-dependent RNA helicase [Bacillus megaterium WSH-002]
Length = 870
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 128/329 (38%), Positives = 191/329 (58%), Gaps = 13/329 (3%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
Y + +K + ILH+G TN+GKT+ AL L+ ++SG Y PLRLLA EV ++LNK V+C
Sbjct: 375 YEMDPRKETEYILHLGDTNTGKTYTALKSLKKAASGSYLAPLRLLALEVFEKLNKDGVAC 434
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
L TG+E + V+ A+H A TVEM + D VIDE QM+ + RGFS+ +A+ A
Sbjct: 435 SLKTGEEEKIVEDAQHMAGTVEMFSELEHGDVTVIDEAQMIQDRDRGFSWYKAITRANAK 494
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF--SNIQTGDCIVTF 246
++H+ G + +++++L G ++ YER +PL V L F ++ D ++ F
Sbjct: 495 QVHVIGSLSIRSMLEEMLD--GVISEIYEYER---DIPLKVDLRKFKIEQVKPADALIVF 549
Query: 247 SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 306
SR + + +E G H S++YGS+PPETR +Q +F E +V+V++DAIGMGLN
Sbjct: 550 SRKKVLQTAAKLEKDG-HKVSVIYGSMPPETRRKQIEQF--IHRETNVIVSTDAIGMGLN 606
Query: 307 LNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKS 366
L I RI+ KFDG + R LT E+KQIAGRAGR G + VGEV ++D + +
Sbjct: 607 LPIRRIVLLENMKFDGQKRRLLTSQELKQIAGRAGRKGL-YNVGEVAF--AKDAKQMREL 663
Query: 367 LLEPSPMLESAGLFPNFDLIYMYSRLHPD 395
L + + P D++ + H D
Sbjct: 664 LFSTDEQISKFSIAPTSDMLRRFKEYHHD 692
>gi|410994891|gb|AFV96356.1| hypothetical protein B649_00210 [uncultured Sulfuricurvum sp.
RIFRC-1]
Length = 942
Score = 218 bits (556), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 139/395 (35%), Positives = 220/395 (55%), Gaps = 19/395 (4%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
DF +L +PLAR R++I + GPTNSGKT+ A +L+ + +G Y PLRLLA E
Sbjct: 420 DFKNL------FPLARSLRRRLIFNTGPTNSGKTYTAFQQLKKAGTGYYLAPLRLLALEG 473
Query: 118 AKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
+ L VS LITG+E+ + A H + T+EM + DC VIDE+QM+ + RG++
Sbjct: 474 YETLRDEGVSASLITGEEQLLDEDATHISSTIEMLSFEVEVDCCVIDEVQMIDDRDRGWA 533
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLN--VPLGSFS 235
+ A++G A + + G P A + + + G+ +++ +ER +PL L P+ +
Sbjct: 534 WANAIIGAPAKTVIMTGSPNAREAVIALAEYLGEPLEIVEFERKNPLELLKSATPIDA-- 591
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
I+ ++ F+R RLK+ + + S++YG+L PE R +A RF + + D+L
Sbjct: 592 -IEPKTAVIAFTRSNALRLKQQLSK--TYRTSVIYGNLSPEVRREEARRFREGET--DIL 646
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG--SKFPVGEVT 353
VA+DAI MGLNL I ++FS KFDG R+LT EV+QI+GRAGRYG K VG +T
Sbjct: 647 VATDAISMGLNLPIKTLLFSKADKFDGQNQRNLTSTEVRQISGRAGRYGLSEKGYVGALT 706
Query: 354 CLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSE 413
+ + L +EP + + NFD I + S + + SL I++ F++N K
Sbjct: 707 NDVLKTVSTLFTKNIEPITL--PFNVMANFDHIMLVSNILEERSLSNIVDFFVQNMKFEG 764
Query: 414 NYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPV 448
+ AN E + + + ++D+ L + KY +P+
Sbjct: 765 PFRAANLESMQEASAIVDRYDLDMRTKYTLATAPL 799
>gi|15894065|ref|NP_347414.1| ATP-dependent RNA helicase [Clostridium acetobutylicum ATCC 824]
gi|337735994|ref|YP_004635441.1| ATP-dependent RNA helicase [Clostridium acetobutylicum DSM 1731]
gi|384457503|ref|YP_005669923.1| ATP-dependent RNA helicase, superfamily II [Clostridium
acetobutylicum EA 2018]
gi|15023664|gb|AAK78754.1|AE007593_2 ATP-dependent RNA helicase, superfamily II [Clostridium
acetobutylicum ATCC 824]
gi|325508192|gb|ADZ19828.1| ATP-dependent RNA helicase, superfamily II [Clostridium
acetobutylicum EA 2018]
gi|336290300|gb|AEI31434.1| ATP-dependent RNA helicase [Clostridium acetobutylicum DSM 1731]
Length = 585
Score = 218 bits (554), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 128/321 (39%), Positives = 196/321 (61%), Gaps = 12/321 (3%)
Query: 65 PHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKA 124
P Y R+ RK +H+G TN+GKT+ A+ RL+++ G+Y PLR+LA E ++LN
Sbjct: 130 PKNEYIETRRMHRKFYIHLGDTNTGKTYNAVERLKTARRGVYLSPLRILALENFEKLNNE 189
Query: 125 NVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLG 184
+ CDL+TG+E + H + T+E D+ YD AVIDEIQM+ RG ++++ALLG
Sbjct: 190 GIICDLLTGEEEILKPDSTHISCTIEKVDLKEHYDIAVIDEIQMISDYQRGIAWSKALLG 249
Query: 185 ICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS--NIQTGDC 242
+ +E+H+CG A +++ I++ D+ +++ Y+R +PL V SF+ +I+ GD
Sbjct: 250 LKCDEIHICGAINARYILETIIKDCEDEYEIKEYKR---AIPLEVEDESFNYKDIKEGDA 306
Query: 243 IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 302
+V FS+ + + ++ +RG SI+YG LPPE R Q +F E VLV +DAIG
Sbjct: 307 VVVFSKKRVLEIAQSYSARGIK-ASIIYGDLPPEVRKLQYEQF--IKKETKVLVTTDAIG 363
Query: 303 MGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL-DSEDLP 361
MG+NL I RIIF ++KFDG ++R+LT EVKQI+GRAGR G + VG V D++D
Sbjct: 364 MGVNLPIRRIIFINIRKFDGEQIRELTSQEVKQISGRAGRIGI-YDVGYVASAGDTQD-- 420
Query: 362 LLHKSLLEPSPMLESAGLFPN 382
+ + L E + A + P+
Sbjct: 421 FIKEKLEEEDKSIRRAVIGPS 441
>gi|295704340|ref|YP_003597415.1| helicase domain-containing protein [Bacillus megaterium DSM 319]
gi|294801999|gb|ADF39065.1| helicase domain protein [Bacillus megaterium DSM 319]
Length = 870
Score = 217 bits (553), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 128/329 (38%), Positives = 191/329 (58%), Gaps = 13/329 (3%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
Y + +K + ILH+G TN+GKT+ AL L+ ++SG Y PLRLLA EV ++LNK V C
Sbjct: 375 YEMDPRKETEYILHLGDTNTGKTYTALKSLKKAASGNYLAPLRLLALEVFEKLNKDGVPC 434
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
L TG+E + V+ A+H A TVEM + D VIDE QM+ + RGFS+ +A+ A
Sbjct: 435 SLKTGEEEKIVEDAQHMAGTVEMFSELEHGDVTVIDEAQMIQDRDRGFSWYKAITRANAK 494
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF--SNIQTGDCIVTF 246
++H+ G + +++++L G ++ YER +PL V L F ++ D ++ F
Sbjct: 495 QVHVIGSLSIRSMLEEMLD--GVISEIHEYER---DIPLKVDLRKFKIEQVKPADALIVF 549
Query: 247 SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 306
SR + + +E G H S++YGS+PPETR +Q +F + E +V+V++DAIGMGLN
Sbjct: 550 SRKKVLQTAAKLEKDG-HKVSVIYGSMPPETRRKQIEQF--INRETNVIVSTDAIGMGLN 606
Query: 307 LNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKS 366
L I RI+ KFDG + R LT E+KQIAGRAGR G + VGEV ++D + +
Sbjct: 607 LPIRRIVLLENMKFDGQKRRLLTSQELKQIAGRAGRKGL-YNVGEVAF--AKDAKQMREL 663
Query: 367 LLEPSPMLESAGLFPNFDLIYMYSRLHPD 395
L + + P D++ + H D
Sbjct: 664 LFLTDEQISKFSIAPTSDMLRRFKEYHHD 692
>gi|339493591|ref|YP_004713884.1| ATP-dependent RNA helicase [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
gi|338800963|gb|AEJ04795.1| ATP-dependent RNA helicase [Pseudomonas stutzeri ATCC 17588 = LMG
11199]
Length = 786
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 141/408 (34%), Positives = 218/408 (53%), Gaps = 13/408 (3%)
Query: 66 HTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN 125
H YP AR+ R+ I +GPTNSGKTH+++ + ++ IY PLRL+A E +R+
Sbjct: 304 HKLYP-ARRLTRRWIALLGPTNSGKTHRSIEAMAAAEHAIYLSPLRLMALENQERIESMG 362
Query: 126 VSCDLITGQEREEVDGAKHRAVTVEMADVV--SDYDCAVIDEIQMLGCKTRGFSFTRALL 183
V C L+TG+E +GA H TVE +D V+DE+QM+ RG+++ AL+
Sbjct: 363 VPCSLVTGEEEIIREGATHFCCTVEEFARFRHQHWDVVVVDEVQMMADPQRGWAWVDALV 422
Query: 184 GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCI 243
+L + G P ++ + ++ D ++VQ +RLSP V + + ++ G +
Sbjct: 423 SAHTPKLMMTGPALIEPSLRTLCELCEDQLQVQRTKRLSP-VEVAKHATTLERLEPGSLL 481
Query: 244 VTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM 303
V FSR + LK +ES GK + S+VYG+L PE R QA RF + E D++VA+DA+GM
Sbjct: 482 VAFSRKLVLELKGMLESAGKSV-SVVYGALSPEVRREQARRFREG--EADIMVATDAVGM 538
Query: 304 GLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLL 363
GLNL + F T +KFDG++ R L V EVKQI GRAGR+G GE+T LD + L +
Sbjct: 539 GLNLPAHTLCFYTDEKFDGIQNRQLKVQEVKQIGGRAGRFG-HHDSGEITALDPQTLKSI 597
Query: 364 HKSLLEP-SPM-LESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCE 421
+ P +P+ L + P+ D + S L + SL F N E + +
Sbjct: 598 RRLFNSPDAPVDLSQFQVRPSIDHLSAISELMGEPSLLRSWLTFNRNINYGEAFVSVLPD 657
Query: 422 EVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK 469
E+ + +ID + L ++ F +P+ D + +Q A + K+
Sbjct: 658 ELAEWIELIDDPKIPLWLRWTFACTPIRGGFDSPA---SQHAQRWIKR 702
>gi|298242251|ref|ZP_06966058.1| helicase domain protein [Ktedonobacter racemifer DSM 44963]
gi|297555305|gb|EFH89169.1| helicase domain protein [Ktedonobacter racemifer DSM 44963]
Length = 961
Score = 217 bits (553), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 127/301 (42%), Positives = 177/301 (58%), Gaps = 6/301 (1%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQER 136
+++ + +G NSGKT AL RL ++ SG Y PLRLLA+E+ LN+ ++C+L+TG+E
Sbjct: 469 QRIKVLLGEANSGKTRAALERLIAAGSGWYLAPLRLLAYEIYDALNRRGIACNLLTGEEE 528
Query: 137 EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDP 196
V GA+ A T+EM D S C VIDE MLG RG+++TRAL+ A E+ + G
Sbjct: 529 IVVRGAQITAATIEMFDARSGGGCVVIDEAHMLGDPDRGWAWTRALMEARAEEMLVLGPL 588
Query: 197 AAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKK 256
AA PL++++L G + RL PL P ++ +V FSR + LK
Sbjct: 589 AARPLVERLLYAVGQPFTFEQSSRLVPLRMATTPY-KLRDLPARTVVVAFSRGMVLALKA 647
Query: 257 AIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFST 316
+E G+ + SIVYG+LPPE R RQA RF A E ++ VA+DAIGMGLNL + F
Sbjct: 648 DLEQMGRKV-SIVYGALPPEVRRRQADRF--ACGETEICVATDAIGMGLNLPADAVCFYE 704
Query: 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE-PSPMLE 375
KK+DG +R LT EV QI GRAGR+G G +T L+ DL L + + PSP+ +
Sbjct: 705 TKKYDGKRVRPLTAMEVHQIGGRAGRFGLA-EQGIITALNKVDLDFLRQQFEQTPSPIRQ 763
Query: 376 S 376
+
Sbjct: 764 A 764
>gi|386020255|ref|YP_005938279.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 4166]
gi|327480227|gb|AEA83537.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 4166]
Length = 786
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 141/408 (34%), Positives = 218/408 (53%), Gaps = 13/408 (3%)
Query: 66 HTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN 125
H YP AR+ R+ I +GPTNSGKTH+++ + ++ IY PLRL+A E +R+
Sbjct: 304 HKLYP-ARRLTRRWIALLGPTNSGKTHRSIEAMAAAEHAIYLSPLRLMALENQERIESMG 362
Query: 126 VSCDLITGQEREEVDGAKHRAVTVEMADVV--SDYDCAVIDEIQMLGCKTRGFSFTRALL 183
V C L+TG+E +GA H TVE +D V+DE+QM+ RG+++ AL+
Sbjct: 363 VPCSLVTGEEEIIREGATHFCCTVEEFARFRHQHWDVVVVDEVQMMADPQRGWAWVDALV 422
Query: 184 GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCI 243
+L + G P ++ + ++ D ++VQ +RLSP V + + ++ G +
Sbjct: 423 SAHTPKLMMTGPALIEPSLRTLCELCEDQLQVQRTKRLSP-VEVAKHATTLERLEPGSLL 481
Query: 244 VTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM 303
V FSR + LK +ES GK + S+VYG+L PE R QA RF + E D++VA+DA+GM
Sbjct: 482 VAFSRKLVLELKGMLESAGKSV-SVVYGALSPEVRREQARRFREG--EADIMVATDAVGM 538
Query: 304 GLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLL 363
GLNL + F T +KFDG++ R L V EVKQI GRAGR+G GE+T LD + L +
Sbjct: 539 GLNLPAHTLCFYTDEKFDGIQNRQLKVQEVKQIGGRAGRFGHH-DRGEITALDPQTLKSI 597
Query: 364 HKSLLEP-SPM-LESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCE 421
+ P +P+ L + P+ D + S L + SL F N E + +
Sbjct: 598 RRLFNSPDAPVDLSQFQVRPSIDHLSAISELMGEPSLLRSWLTFNRNINYGEAFVSVLPD 657
Query: 422 EVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK 469
E+ + +ID + L ++ F +P+ D + +Q A + K+
Sbjct: 658 ELAEWIELIDDPKIPLWLRWTFACTPIRGGFDSPA---SQHAQRWIKR 702
>gi|146281980|ref|YP_001172133.1| ATP-dependent RNA helicase [Pseudomonas stutzeri A1501]
gi|145570185|gb|ABP79291.1| probable ATP-dependent RNA helicase [Pseudomonas stutzeri A1501]
Length = 786
Score = 217 bits (552), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 137/387 (35%), Positives = 210/387 (54%), Gaps = 10/387 (2%)
Query: 66 HTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN 125
H YP AR+ R+ I +GPTNSGKTH+++ + ++ IY PLRL+A E +R+
Sbjct: 304 HKLYP-ARRLTRRWIALLGPTNSGKTHRSIEAMAAAEHAIYLSPLRLMALENQERIESMG 362
Query: 126 VSCDLITGQEREEVDGAKHRAVTVEMADVV--SDYDCAVIDEIQMLGCKTRGFSFTRALL 183
V C L+TG+E +GA H TVE +D V+DE+QM+ RG+++ AL+
Sbjct: 363 VPCSLVTGEEEIIREGATHFCCTVEEFARFRHQHWDVVVVDEVQMMADPQRGWAWVDALV 422
Query: 184 GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCI 243
+L + G P ++ + ++ D ++VQ +RLSP V + + ++ G +
Sbjct: 423 SAHTPKLMMTGPALIEPSLRTLCELCEDQLQVQRTKRLSP-VEVAKHATTLERLEPGSLL 481
Query: 244 VTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM 303
V FSR + LK +ES GK + S+VYG+L PE R QA RF + E D++VA+DA+GM
Sbjct: 482 VAFSRKLVLELKGMLESAGKSV-SVVYGALSPEVRREQARRFREG--EADIMVATDAVGM 538
Query: 304 GLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLL 363
GLNL + F T +KFDG++ R L V EVKQI GRAGR+G GE+T LD + L +
Sbjct: 539 GLNLPAHTLCFYTDEKFDGIQNRQLKVQEVKQIGGRAGRFGHH-DSGEITALDPQTLKSI 597
Query: 364 HKSLLEP-SPM-LESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCE 421
+ P +P+ L + P+ D + S L + SL F N E + +
Sbjct: 598 RRLFNSPDAPVDLSQFQVRPSIDHLSAISELMGEPSLLRSWLTFNRNINYGEAFVSVLPD 657
Query: 422 EVLKVATVIDQLPLRLHEKYLFCISPV 448
E+ + +ID + L ++ F +P+
Sbjct: 658 ELAEWIELIDDPKIPLWLRWTFACTPI 684
>gi|421615784|ref|ZP_16056804.1| ATP-dependent RNA helicase [Pseudomonas stutzeri KOS6]
gi|409782320|gb|EKN61885.1| ATP-dependent RNA helicase [Pseudomonas stutzeri KOS6]
Length = 786
Score = 216 bits (551), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 142/410 (34%), Positives = 221/410 (53%), Gaps = 17/410 (4%)
Query: 66 HTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN 125
H YP AR+ R+ +GPTNSGKTH+++ + ++ GIY PLRL+A E +R+
Sbjct: 304 HQLYP-ARRLTRRWTALLGPTNSGKTHRSIEAMAAAEHGIYLSPLRLMALENQERIEAMG 362
Query: 126 VSCDLITGQEREEVDGAKHRAVTVEMADVV--SDYDCAVIDEIQMLGCKTRGFSFTRALL 183
V C L+TG+E +GA H TVE +D V+DE+QM+ RG+++ AL+
Sbjct: 363 VPCSLVTGEEEIIREGATHFCCTVEEFARFRHQHWDVVVVDEVQMMADPQRGWAWVDALV 422
Query: 184 GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCI 243
L + G P ++ + ++ D + VQ +RLSP V + + ++ G +
Sbjct: 423 SAHTQALMMTGPALIEPSLRTLCELCEDRLVVQRTKRLSP-VEVARRATTLERLEPGSLL 481
Query: 244 VTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM 303
V FSR + LK +ES GK + S+VYG+L PE R QA RF + E D++VA+DA+GM
Sbjct: 482 VAFSRKLVLELKGMLESAGKSV-SVVYGALSPEVRREQARRFREG--EADIMVATDAVGM 538
Query: 304 GLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLL 363
GLNL + F + +K+DG++ R L V EVKQI GRAGR+G GE+T LD++ L +
Sbjct: 539 GLNLPAHTLCFYSDEKYDGIQNRQLKVQEVKQIGGRAGRFG-HHDSGEITALDAQTLKSI 597
Query: 364 HKSLLEP-SPM-LESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCE 421
+ P +P+ L + P+ D + S L + SL F N E + +
Sbjct: 598 RQLFNSPDAPVDLSQFQVRPSIDHLTAISELMGEPSLLRAWLTFNRNINYGEAFISVLPD 657
Query: 422 EVLKVATVID--QLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK 469
E+ + +ID ++PLRL ++ F +P+ D + +Q A + K+
Sbjct: 658 ELAEWIELIDDPKIPLRL--RWTFACTPIRGGFDSPA---SQHAQRWIKR 702
>gi|182418042|ref|ZP_02949347.1| ATP-dependent RNA helicase SUV3 [Clostridium butyricum 5521]
gi|237665685|ref|ZP_04525673.1| ATP-dependent RNA helicase SUV3 [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182378097|gb|EDT75633.1| ATP-dependent RNA helicase SUV3 [Clostridium butyricum 5521]
gi|237658632|gb|EEP56184.1| ATP-dependent RNA helicase SUV3 [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 908
Score = 216 bits (550), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/323 (38%), Positives = 190/323 (58%), Gaps = 9/323 (2%)
Query: 62 LTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL 121
L P Y +R R +LHVG TN+GKT+ ++ RL + SG+Y PLRLLA E+ +L
Sbjct: 390 LDNPINEYEESRLMERHFVLHVGETNTGKTYSSILRLMEAESGVYLAPLRLLALEIQDKL 449
Query: 122 NKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRA 181
N NVSC L+TG+E + + H + T+E + YD VIDE QM+ RG+++TRA
Sbjct: 450 NSENVSCSLLTGEEEDIIPYGTHVSSTIEKLQTGTFYDVCVIDEAQMINDNQRGWAWTRA 509
Query: 182 LLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGD 241
+ + E+H+C P A+ +I ++++ GD +V +++R + L+ + +++ GD
Sbjct: 510 ITAALSPEIHICMAPEALNVIIKLIEDCGDTYEVINHKRDTELIFEDKTFNLDKDVKAGD 569
Query: 242 CIVTFSRHAIYRLKKAIESRGKHL-CSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 300
+V F + L + E K++ SI+YGSLP TR +Q RF + +E V+V +DA
Sbjct: 570 ALVVFGKRKA--LAVSAELLNKNIKTSIIYGSLPYSTRKKQFERFLNGETE--VIVCTDA 625
Query: 301 IGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL 360
IGMG+NL I RI+F +K+DGV LR L E+KQIAGRAGR G + G V S D+
Sbjct: 626 IGMGVNLPIKRIVFLETRKYDGVSLRRLKTSEIKQIAGRAGRKGI-YNKGYVAA--SCDI 682
Query: 361 PLLHKSL-LEPSPMLESAGLFPN 382
L+ +L EP+P+ + P+
Sbjct: 683 NLIRGALRAEPAPIEKCYAGIPD 705
>gi|392420786|ref|YP_006457390.1| ATP-dependent RNA helicase [Pseudomonas stutzeri CCUG 29243]
gi|390982974|gb|AFM32967.1| ATP-dependent RNA helicase [Pseudomonas stutzeri CCUG 29243]
Length = 785
Score = 215 bits (548), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 141/408 (34%), Positives = 218/408 (53%), Gaps = 13/408 (3%)
Query: 66 HTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN 125
H YP AR R+ I +GPTNSGKTH+++ + ++ IY PLRL+A E +R+
Sbjct: 304 HKLYP-ARLLTRRWIALLGPTNSGKTHRSIEAMAAAEHAIYLSPLRLMALENQERIESMG 362
Query: 126 VSCDLITGQEREEVDGAKHRAVTVEMADVV--SDYDCAVIDEIQMLGCKTRGFSFTRALL 183
V C L+TG+E +GA H TVE +D V+DE+QM+ RG+++ AL+
Sbjct: 363 VPCSLVTGEEEIIREGATHFCCTVEEFARFRHQHWDVVVVDEVQMMADPQRGWAWVDALV 422
Query: 184 GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCI 243
+L + G P ++ + ++ D ++VQ +RLSP V ++ + ++ G +
Sbjct: 423 SAHTPKLMMTGPALIEPSLRTLCELCEDQLQVQRTKRLSP-VEVSKRSTTLERLEPGSLL 481
Query: 244 VTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM 303
V FSR + LK +ES GK + S+VYG+L PE R QA RF + E D++VA+DA+GM
Sbjct: 482 VAFSRKLVLELKGMLESVGKSV-SVVYGALSPEVRREQARRFREG--EADIMVATDAVGM 538
Query: 304 GLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLL 363
GLNL + F T +KFDG++ R L V EVKQI GRAGR+G GE+T LD + L +
Sbjct: 539 GLNLPAHTLCFYTDEKFDGIQNRQLKVQEVKQIGGRAGRFGHH-DSGEITALDPQTLKSI 597
Query: 364 HKSLLEP-SPM-LESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCE 421
+ P +P+ L + P+ D + S L + SL F N E + +
Sbjct: 598 RRLFNSPDAPVDLSQFQVRPSIDHLSAISELMGEPSLLRAWLTFNRNINYGEAFISVLPD 657
Query: 422 EVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK 469
E+ + +ID + L ++ F +P+ D + +Q A + K+
Sbjct: 658 ELAEWIELIDDPKIPLWLRWTFACTPIRGGFDSPA---SQHAQRWIKR 702
>gi|373859839|ref|ZP_09602561.1| helicase domain protein [Bacillus sp. 1NLA3E]
gi|372450424|gb|EHP23913.1| helicase domain protein [Bacillus sp. 1NLA3E]
Length = 858
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 121/278 (43%), Positives = 174/278 (62%), Gaps = 13/278 (4%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE 137
+ +LH+G TN+GKTHQALSR++ + SG+Y PLRLLA EV +LN V C L TG+E +
Sbjct: 373 RFVLHIGETNTGKTHQALSRMKEAKSGLYLAPLRLLALEVFDKLNAEGVPCSLKTGEEEK 432
Query: 138 EVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 197
V A H + TVEM ++ VIDE QM+ K RGFS+ +A+ A E+H+ G
Sbjct: 433 LVLDATHFSCTVEMFHEKDHFEVIVIDEAQMIADKDRGFSWYKAISKANAKEVHIIG--- 489
Query: 198 AVPLIQQILQVTGD-DVKVQSYERLSPLVPLNVPLGSFSNIQT--GDCIVTFSRHAIYRL 254
+ + + +LQ+ G+ ++++ Y R +PL V F+ + + GD +V FSR +
Sbjct: 490 SRNIKEMLLQLLGESEIEIYEYSR---EIPLEVEQKEFNLVHSKKGDALVCFSRRKVLET 546
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
++++G + S++YGS+PPETR +Q RF D E +V++DAIGMGLNL I RI+F
Sbjct: 547 ASKLQTKGISV-SMIYGSMPPETRKKQIQRFIDG--ETTRIVSTDAIGMGLNLPIRRIVF 603
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV 352
+KFDG R LT EVKQIAGRAGR G + +G+V
Sbjct: 604 LENEKFDGTRRRRLTSQEVKQIAGRAGRKGL-YNIGKV 640
>gi|431927872|ref|YP_007240906.1| DNA/RNA helicase [Pseudomonas stutzeri RCH2]
gi|431826159|gb|AGA87276.1| DNA/RNA helicase, superfamily II [Pseudomonas stutzeri RCH2]
Length = 786
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 141/408 (34%), Positives = 216/408 (52%), Gaps = 13/408 (3%)
Query: 66 HTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN 125
H YP AR+ R+ +GPTNSGKTH+++ + ++ GIY PLRL+A E +R+
Sbjct: 304 HKLYP-ARRLTRRWTALLGPTNSGKTHRSIEAMAAAEHGIYLSPLRLMALENQERIESMG 362
Query: 126 VSCDLITGQEREEVDGAKHRAVTVEMADVV--SDYDCAVIDEIQMLGCKTRGFSFTRALL 183
V C L+TG+E +GA H TVE +D V+DE+QM+ RG+++ AL+
Sbjct: 363 VPCSLVTGEEEIIREGATHFCCTVEEFARFRHQHWDVVVVDEVQMMADPQRGWAWVDALV 422
Query: 184 GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCI 243
+L + G P ++ + + D + VQ +RLSP V + + ++ G +
Sbjct: 423 SAHTPQLMMTGPALIEPSLRTLCDLCEDKLVVQRTKRLSP-VEVARHATTLERLEPGSLL 481
Query: 244 VTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM 303
V FSR + LK +ES GK + S+VYG+L PE R QA RF + E D++VA+DA+GM
Sbjct: 482 VAFSRKLVLELKGMLESAGKSV-SVVYGALSPEVRREQARRFREG--EADIMVATDAVGM 538
Query: 304 GLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLL 363
GLNL + F T +KFDG++ R L V EVKQI GRAGR+G GE+T LD + L +
Sbjct: 539 GLNLPAHTLCFYTDEKFDGIQNRQLNVQEVKQIGGRAGRFGHH-DNGEITALDPQTLKSI 597
Query: 364 HKSLLEP-SPM-LESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCE 421
+ P +P+ L + P+ D + S L + SL F N E + +
Sbjct: 598 RRLFNSPDAPVDLSQFQVRPSIDHLSAISELMGEPSLLRAWLTFNRNINYGEAFISILPD 657
Query: 422 EVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK 469
E+ + +ID + L ++ F +P+ D + +Q A + K+
Sbjct: 658 ELAEWIELIDDPKVPLWLRWTFACTPIRGGFDSPA---SQHAQRWIKR 702
>gi|254457657|ref|ZP_05071085.1| Helicase conserved C-terminal domain protein [Sulfurimonas
gotlandica GD1]
gi|373867546|ref|ZP_09603944.1| putative RNA helicase [Sulfurimonas gotlandica GD1]
gi|207086449|gb|EDZ63733.1| Helicase conserved C-terminal domain protein [Sulfurimonas
gotlandica GD1]
gi|372469647|gb|EHP29851.1| putative RNA helicase [Sulfurimonas gotlandica GD1]
Length = 930
Score = 215 bits (547), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 142/394 (36%), Positives = 228/394 (57%), Gaps = 13/394 (3%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
DF +L +P+AR RK+ LH+GPTNSGKT+ A+ RLE + +G Y PLRLLA E
Sbjct: 420 DFKNL------FPIARDMRRKLTLHIGPTNSGKTYSAMKRLEQADTGYYLAPLRLLALEG 473
Query: 118 AKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
+ L + LITG+E+ + A H + T+EM + D D VIDE+QML + RG++
Sbjct: 474 YEGLKAEGIEASLITGEEQLINEDATHISSTIEMLNFDVDVDVCVIDEVQMLDDRDRGWA 533
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNI 237
+ A++G A E+ + G + + + G+++++ +ER +PL L P+ S ++
Sbjct: 534 WANAIIGAPAKEIIMTGSSNVKAAVIALAEYLGEELEIIEFERKNPLTLLEFPISS-KDV 592
Query: 238 QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 297
+ I+ FSR + RLK+ SR S+VYG+L PE R +A RF + ++ +L+A
Sbjct: 593 EESTAIIAFSRKDVLRLKQDF-SRF-FSVSVVYGNLSPEVRREEARRFREGDTQ--ILIA 648
Query: 298 SDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357
+DAI MG+NL I I+FS +KFDG+ R+L E+ QI+GRAGRYG K G V LD
Sbjct: 649 TDAIAMGMNLPIKTILFSKAEKFDGITQRNLFPSEILQISGRAGRYGMK-EEGFVGALDM 707
Query: 358 EDLPLLHKSLL-EPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYF 416
+ L ++ K+ EP + + N + I + S + ++SL IL+ F+EN + + +
Sbjct: 708 DTLRIIKKNFFKEPREISIPFNVMANLEHIKLVSSILEENSLSEILKFFVENMEFNGPFR 767
Query: 417 FANCEEVLKVATVIDQLPLRLHEKYLFCISPVDM 450
+N +++L+ A ++D L + KY +P+ +
Sbjct: 768 ASNLDDMLEAALIVDGFDLDIATKYHLACAPLTL 801
>gi|297538677|ref|YP_003674446.1| helicase domain-containing protein [Methylotenera versatilis 301]
gi|297258024|gb|ADI29869.1| helicase domain protein [Methylotenera versatilis 301]
Length = 503
Score = 212 bits (540), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 123/300 (41%), Positives = 177/300 (59%), Gaps = 12/300 (4%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+ AR R ++GPTNSGKT+QAL LE + SG+Y PLRLLA E+ RL A V C
Sbjct: 9 FTQARLLNRHHHFYLGPTNSGKTYQALIALEKAQSGVYLAPLRLLAMEIRDRLVAAGVPC 68
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
+LITG+ER + GA+H A T+EM + + A+IDEIQML RG ++T AL+G+ A+
Sbjct: 69 NLITGEERVLMAGAQHTASTIEMMNPSKTVEVAIIDEIQMLQDGDRGSAWTTALVGVPAS 128
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL--GSFS------NIQTG 240
++ +CG A ++ + ++ R +PLV + + +S +Q G
Sbjct: 129 QVFICGSTAVTAPCVAAIEAMDETYEITYLARKTPLVLEDESICGKHYSRQKLKPKLQKG 188
Query: 241 DCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 300
D I+ FSR + G + SI YG+L PE R ++ RF + + D+LVA+DA
Sbjct: 189 DAIIAFSRKDVLTFSARFRQWGFTVASI-YGALSPEVRRTESERF--CTGKADILVATDA 245
Query: 301 IGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL 360
IGMGLNL I R+IFS + KFDGV R L EV+QIAGRAGR+G + G ++ ++++L
Sbjct: 246 IGMGLNLPIRRVIFSNIHKFDGVASRHLNSTEVRQIAGRAGRFGI-YDTGYISVFENDEL 304
>gi|449018378|dbj|BAM81780.1| probable mitochondrial ATP-dependent RNA helicase Suv3
[Cyanidioschyzon merolae strain 10D]
Length = 843
Score = 210 bits (534), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 132/381 (34%), Positives = 211/381 (55%), Gaps = 56/381 (14%)
Query: 146 AVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQI 205
+ TVEMAD+ A++DE+QM+ + RG ++TRA+LG+ A+ELHLCG P+AV +++ +
Sbjct: 337 SCTVEMADLYRPVQVAIVDEVQMIAERERGGAWTRAILGLPADELHLCGCPSAVDVVRAM 396
Query: 206 LQV-TGDDVKVQSYERLSPLVPLNVPLGSFSN-----IQTGDCIVTFSRHAIYRLKKAIE 259
++ + ++V++YERL PL LG ++ GDC VTFSR ++R+K +E
Sbjct: 397 IEEDCHEQLEVRTYERLGPLRVSEKALGETQRQWSRGVRAGDCFVTFSRRELFRIKHQLE 456
Query: 260 SRG-KHL-CSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 317
K L C+++YGSLPPETR QA FN+A + +LVA+DA+GMGLNLNI R+IFS +
Sbjct: 457 RNAIKPLQCAVIYGSLPPETRREQAQLFNEADTH-SILVATDAVGMGLNLNIRRMIFSAL 515
Query: 318 KKFDGVELRDLTVPEVKQIAGRAGRYGS---KFPVGEVTCLDSEDL----PLLHKSLLE- 369
KFDG + R LT E+ QIAGRAGRY + GEVT +DL +LH + ++
Sbjct: 516 DKFDGTQRRPLTTAEILQIAGRAGRYAGPDRRPQCGEVTAFRQDDLRRLRSILHGAGIDT 575
Query: 370 ---PSPM----LESAGLFPNFDLIYMY-----------------------SRLHPDSSLY 399
P+ + + AGL P +++ + ++ P S LY
Sbjct: 576 HGWPASIVPEKVTKAGLSPTREMMEAFAARCTAELASRSASGDDLMRRAATKRPPLSELY 635
Query: 400 GILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLF------CISPVDMNDD 453
E+ L S YF + +V ++ ++++ R+ E F ++P+ ++D
Sbjct: 636 EKFEN-LAQVDASGRYFVCDLTDVKRICRLLER--ARVDEWMTFDLLYSASMAPLKLDDA 692
Query: 454 ISSQGLTQFATNYSKKGIVQL 474
+ + + QF ++ G+V+L
Sbjct: 693 AACEAMVQFMRAFTTSGVVRL 713
Score = 114 bits (284), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 60/121 (49%), Positives = 74/121 (61%), Gaps = 10/121 (8%)
Query: 25 EPFSLNSEKIIGAFASVDVIIRS---YCS-------GSGMKKFDFTDLTRPHTWYPLARK 74
E S +E A A +++ R+ YC GS + DL+ P TW+PLAR
Sbjct: 122 ETLSEGAELSCAAHAPQELVFRAMLAYCRQRYGEELGSLARLAVCADLSLPATWFPLARA 181
Query: 75 KVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQ 134
+ RKVI H G TNSGKTHQAL R ++ SG+YCGPLRLLAWEV RLNK ++C L TGQ
Sbjct: 182 RKRKVIYHAGKTNSGKTHQALQRFLNAESGVYCGPLRLLAWEVYDRLNKQGIACILRTGQ 241
Query: 135 E 135
E
Sbjct: 242 E 242
>gi|391328357|ref|XP_003738656.1| PREDICTED: ATP-dependent RNA helicase suv3, mitochondrial-like,
partial [Metaseiulus occidentalis]
Length = 316
Score = 208 bits (530), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 131/311 (42%), Positives = 185/311 (59%), Gaps = 8/311 (2%)
Query: 79 VILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE 138
+IL GPTNSGK+H AL L ++ SG+ PLRLLA E + L K V+ L+TG+ER
Sbjct: 1 MILITGPTNSGKSHAALDALANAESGLALAPLRLLAHEFREALGKRGVAASLMTGEERII 60
Query: 139 VDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAA 198
GA+H A TVEM D A+IDE QML RG ++T A++G+ A ++++ G P
Sbjct: 61 EPGAQHIAATVEMCPFHKPVDVAIIDEAQMLTDPDRGAAWTAAIMGVPARKVYILGAPDC 120
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
+PLI++I + D + S ER SPL P +++ D ++ FSR + L+ +
Sbjct: 121 IPLIRRIATLCNDPLDEISLERKSPLRAAAAPT-RLNDLSKSDAVIAFSRRDVLDLRAEL 179
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
RG+ + ++VYG+L PE R +A RFN E D+LVA+DAIGMGLNL+I R+IFS ++
Sbjct: 180 MGRGRRV-AVVYGALSPEVRRAEAARFN--RGEADILVATDAIGMGLNLSIRRVIFSALR 236
Query: 319 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE--PSPMLES 376
KFDG + RDL E++QI GRAGRYG G V L + + +L P PM E
Sbjct: 237 KFDGRQSRDLLAQEIRQIGGRAGRYG-HHEDGIVGVLAGAGSTSVIQRMLNALPEPMTEL 295
Query: 377 AGLF-PNFDLI 386
L P+ D++
Sbjct: 296 RPLVQPDMDIV 306
>gi|399218229|emb|CCF75116.1| unnamed protein product [Babesia microti strain RI]
Length = 666
Score = 204 bits (520), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 116/324 (35%), Positives = 176/324 (54%), Gaps = 29/324 (8%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
TDL+RP +P AR+ RK+ +H GP NSGKTH +L +L + SG+YC PLRL+A+E+
Sbjct: 116 TDLSRPDQAFPQARQLNRKIFIHHGPPNSGKTHSSLLKLIQAKSGVYCAPLRLMAYEIFD 175
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
+L +A + +L+TGQ+R + H TVEM + +D +IDE+QM+ ++RGF++
Sbjct: 176 KLTRAGIKTNLLTGQKRMIDSESSHLVCTVEMLPIGKSFDVGIIDEMQMVADESRGFAWC 235
Query: 180 RAL--LGICA-----------------------NELHLCGDPAAVPLIQQILQVTGDDVK 214
RA L +C N L LC A+P+ + + +
Sbjct: 236 RAFFALQVCVILLCDCIFLYLCMSCMYLLNGLINALRLCIMFCALPIYTALANQCNETAQ 295
Query: 215 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 274
+ Y RL+ V + + +++ DC+V+FS +++ K +E GK C I+YGSLP
Sbjct: 296 LIEYNRLTQPVKICEAPITLDDLKPRDCLVSFSPITLFQYKFKLECLGKKSC-ILYGSLP 354
Query: 275 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 334
PETR Q RFN +L+A+D IGMGLNL+I R+I + ++K R L+ E+
Sbjct: 355 PETRLLQIERFNRGGH---ILLATDVIGMGLNLDIQRVILANLEKSIDGNNRPLSPLELS 411
Query: 335 QIAGRAGRYGSKFPVGEVTCLDSE 358
QI RAGR+G E L +
Sbjct: 412 QIVNRAGRFGISNSAAECGVLKKQ 435
>gi|424779131|ref|ZP_18206064.1| helicase domain-containing protein [Alcaligenes sp. HPC1271]
gi|422886153|gb|EKU28584.1| helicase domain-containing protein [Alcaligenes sp. HPC1271]
Length = 465
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 125/365 (34%), Positives = 205/365 (56%), Gaps = 31/365 (8%)
Query: 116 EVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
EV RL A + C+L+TG+ER V GA+H A TVEM D + AV+DEIQML + RG
Sbjct: 2 EVRDRLMNAGIPCNLVTGEERVMVPGAQHTACTVEMMDPTMEVRVAVLDEIQMLQDEQRG 61
Query: 176 FSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL----VPLNVPL 231
+++T AL+G+ A L +CGD + + +++++ + ++++ ER +PL P++ P
Sbjct: 62 WAWTAALVGVPARTLFVCGDASVLRPCERLVRSMEETMELEFTERKTPLEVMPYPVDPPR 121
Query: 232 GS-------------------FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGS 272
+ + GD +V F+R + L ++G + +I YG+
Sbjct: 122 ATGKQGRQEAPWRGRKDRQREAQGVSKGDAVVAFTRKDVLTLSARYRAQGWKVATI-YGA 180
Query: 273 LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPE 332
L PE R ++ RF+ E DVLVA+DAIGMGLNL I R++FST+ KFDG +R L E
Sbjct: 181 LAPEVRRTESERFSQG--EADVLVATDAIGMGLNLPIRRVLFSTVHKFDGRSMRALNATE 238
Query: 333 VKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE-SAGLFPNFDLIYMYSR 391
V+QIAGRAGRYG +P G V +D +DL + L +P ++ + P+ + + +
Sbjct: 239 VRQIAGRAGRYG-LYPKGYVGAMDKQDLNHIRTQLQSDAPSVDLRLPIAPSPEHVQALAS 297
Query: 392 LHPDSSLYGILEHFLEN-AKLSENYFFANCEEVLKVATVIDQLP--LRLHEKYLFCISPV 448
L ++++ +L++F + A S + A ++ +++ +D+L L L EK+ F +PV
Sbjct: 298 LLDNNNIGAVLQYFAQKVASDSPLFQTAGLKDAIELGFCVDRLAPKLDLREKFTFACAPV 357
Query: 449 DMNDD 453
++ D
Sbjct: 358 SVDKD 362
>gi|397687838|ref|YP_006525157.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 10701]
gi|395809394|gb|AFN78799.1| ATP-dependent RNA helicase [Pseudomonas stutzeri DSM 10701]
Length = 812
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 136/412 (33%), Positives = 210/412 (50%), Gaps = 10/412 (2%)
Query: 72 ARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLI 131
AR+ R +GPTNSGKTH+A+ + S IY PLRL+A E +R+ V C L+
Sbjct: 309 ARRITRTWTALLGPTNSGKTHRAIEAMTSVERAIYLSPLRLMALENQERIESMGVPCSLV 368
Query: 132 TGQEREEVDGAKHRAVTVEMADVV--SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE 189
TG+E +GA H TVE +D V+DE+QM+ RG+++ AL+ E
Sbjct: 369 TGEEEIIREGATHFCCTVEEFARFRHQHWDVVVVDEVQMMADSQRGWAWVDALVSAYTPE 428
Query: 190 LHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRH 249
L + G P ++ + + D + V+ +RLSP V + S + G +V FSR
Sbjct: 429 LIMTGPMLIQPSLKTLCDLCEDHLLVKRTKRLSP-VEVARRATSLKQLDEGSMLVAFSRK 487
Query: 250 AIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNI 309
+ LK +E GK + S+VYG+L PE R QA RF + E D++VA+DA+GMGLNL
Sbjct: 488 TVLELKALLEMTGKSV-SVVYGALSPEVRREQARRFREG--EADLMVATDAVGMGLNLPA 544
Query: 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLE 369
+ F T +K+DG++ R L V EVKQI GRAGR+G G +T LD + L + +
Sbjct: 545 HTLCFYTDEKYDGIQNRQLRVQEVKQIGGRAGRFGH-HDSGTITALDGQTLQAIRQLFYS 603
Query: 370 P-SPM-LESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVA 427
P P+ L + P+ + + + L D SL F N + +E+ +
Sbjct: 604 PDQPVDLSQFQVRPSIEHLQAIAELMGDPSLLRAWLTFNRNINYGAEFISILPDELAEWI 663
Query: 428 TVIDQLPLRLHEKYLFCISPVDMN-DDISSQGLTQFATNYSKKGIVQLREIF 478
+ID + L +++F +P+ D ++ Q+ ++ V+L +F
Sbjct: 664 KLIDDPQIDLRLRWIFACTPIRGGLDSPAATHAQQWLKKVAQDKPVELPRLF 715
>gi|251771058|gb|EES51642.1| helicase domain protein [Leptospirillum ferrodiazotrophum]
Length = 516
Score = 203 bits (517), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 128/389 (32%), Positives = 210/389 (53%), Gaps = 11/389 (2%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
+P AR+ R+ +GPTNSGKTH+AL+ LE+ G Y PLRLLA E+ +R +
Sbjct: 37 WPEARRVQRRWTAWLGPTNSGKTHEALAHLEARG-GRYLAPLRLLAQEIHERFEARGIPT 95
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
L TG+ER + ++H + TVEM + C VIDE+QM+ + RG ++ R LLG +
Sbjct: 96 TLHTGEERILREESRHLSATVEMGSTTEEAPCVVIDEVQMMADRERGPAWVRGLLGSPSE 155
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
E+ +CG P ++++ G ++ V+ R +PL + P+ + G +V F+R
Sbjct: 156 EIMVCGTPHVEGALRRLADYAGVELDVRYTRRKTPLSVSSAPI-PLDRVPDGSIVVAFTR 214
Query: 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308
+ L + + RG+ + +I YG++PPE R ++ RF + E V+VA+DA+GMGLN+
Sbjct: 215 LDVLSLARILRDRGRPVATI-YGAMPPELRRSESRRFR--AGEALVMVATDAVGMGLNVP 271
Query: 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL 368
+IFST KFDG R L EV+QI GRAGR+G G + +D ++ +
Sbjct: 272 AEYVIFSTAAKFDGRMDRILEPEEVRQIGGRAGRFGL-HEQGIIAGMDRRTHQIVARQFS 330
Query: 369 EPS-PMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANC-EEVLKV 426
PS P+ P++ ++ S + ++L +L L + LS+ + + E+ +
Sbjct: 331 HPSIPVNGPFPFVPDYPIVLSASEVTGSANLEVLLSR-LHASILSDAHLRSGIGPEIRQK 389
Query: 427 ATVIDQLP--LRLHEKYLFCISPVDMNDD 453
A I++L L L E++L +P + +
Sbjct: 390 AARIERLAPLLPLSERWLLLFAPENRTTE 418
>gi|402579073|gb|EJW73026.1| hypothetical protein WUBG_16067, partial [Wuchereria bancrofti]
Length = 227
Score = 202 bits (515), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/233 (45%), Positives = 153/233 (65%), Gaps = 18/233 (7%)
Query: 85 PTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE-EVDG-- 141
PTNSGKT++AL + + +G YC PLRLLA EV ++ N+ + CD+ITG+ER VD
Sbjct: 1 PTNSGKTYEALQQFYQAKTGFYCCPLRLLANEVCEKTNEKGIKCDMITGEERRYAVDADN 60
Query: 142 -AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVP 200
+ H A+TVEM V + + AVIDEIQML ++RG+++TRALLGI A E+HLCG+ AAV
Sbjct: 61 PSSHVAMTVEMVPVDVNVEVAVIDEIQMLRDQSRGWAWTRALLGIAAKEIHLCGEEAAVD 120
Query: 201 LIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIES 260
+++ +L G+ V+V YER +PL GDC+V FS ++ + K++
Sbjct: 121 IVRSLLDPIGEHVEVHLYERKTPLT-------------DGDCLVCFSVSMLFSVAKSLTK 167
Query: 261 RGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
G +++YG+LPP T+ QA FN+ S + +V+VA+DA+GMGLNLNI R +
Sbjct: 168 LGVQP-TVIYGALPPWTKLNQAKTFNEMSRKPNVMVATDAVGMGLNLNIRRFV 219
>gi|307719997|ref|YP_003891137.1| helicase domain-containing protein [Sulfurimonas autotrophica DSM
16294]
gi|306978090|gb|ADN08125.1| helicase domain protein [Sulfurimonas autotrophica DSM 16294]
Length = 931
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 134/394 (34%), Positives = 225/394 (57%), Gaps = 13/394 (3%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
DF +L +P+AR RK++LH+GPTNSGKT++A+ L+ + +G Y PLRLLA E
Sbjct: 421 DFKNL------FPIARSMQRKLVLHIGPTNSGKTYEAMQALKEADTGYYLAPLRLLALEG 474
Query: 118 AKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
+ L + LITG+E+ D A H + T+EM + D D VIDE+QM+ + RG++
Sbjct: 475 YETLKAEGIESSLITGEEQILDDEATHISSTIEMMNYDVDVDVCVIDEVQMIDDRDRGWA 534
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNI 237
+ A++G A E+ + G P I + + G++++++ +ER +PL L P ++
Sbjct: 535 WANAIIGAPAKEVIMTGSPNVKEAIIALAEYLGEELEIREFERKNPLELLEKPTHP-KDV 593
Query: 238 QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 297
+ I+ FSR + RLK+ + S+VYG+L PE R +A RF + ++ +LVA
Sbjct: 594 EAATAIIAFSRKDVLRLKQNFSKDFE--VSVVYGNLSPEVRREEARRFREGETQ--ILVA 649
Query: 298 SDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357
+DAI MG+NL I ++FS +KFDG+ R+L E+ QIAGRAGRYG G V L +
Sbjct: 650 TDAIAMGMNLPIKTVLFSKAEKFDGIIQRNLFPSEIHQIAGRAGRYGL-HENGYVGALHA 708
Query: 358 EDLPLLHKSLLEPSPMLESA-GLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYF 416
+ L ++ K+ + + + + N + I + S + ++SL IL F++N ++
Sbjct: 709 DALNIVKKNFNKRAKEINVPFKVMANLEHIKLVSTILEENSLEEILRFFIKNMVFDGPFY 768
Query: 417 FANCEEVLKVATVIDQLPLRLHEKYLFCISPVDM 450
A+ +++L+ + ++D L + KY +P+ +
Sbjct: 769 AASLDDMLEASRIVDSYDLDIATKYHLACAPLTL 802
>gi|418292700|ref|ZP_12904631.1| ATP-dependent RNA helicase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
gi|379064114|gb|EHY76857.1| ATP-dependent RNA helicase [Pseudomonas stutzeri ATCC 14405 = CCUG
16156]
Length = 786
Score = 199 bits (507), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 141/408 (34%), Positives = 217/408 (53%), Gaps = 13/408 (3%)
Query: 66 HTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN 125
H YP AR+ R+ +GPTNSGKTH+++ + ++ GIY PLRL+A E +R+
Sbjct: 304 HKLYP-ARRLTRRWTALLGPTNSGKTHRSIEAMAAAEHGIYLSPLRLMALENQERIESMG 362
Query: 126 VSCDLITGQEREEVDGAKHRAVTVEMADVVS--DYDCAVIDEIQMLGCKTRGFSFTRALL 183
V C L+TG+E +GA H TVE +D V+DE+QM+ RG+++ AL+
Sbjct: 363 VPCSLVTGEEEIIREGATHFCYTVEEFARFRHLHWDVVVVDEVQMVADPQRGWAWVDALV 422
Query: 184 GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCI 243
+L + G P ++ + ++ D + VQ +RLSP V + + ++ G +
Sbjct: 423 SAHTPQLMMTGPALIQPSLRTLCELCEDKLVVQRTKRLSP-VEVARHATTLQRLEPGSLL 481
Query: 244 VTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM 303
V FSR + LK +ES GK + S+VYG+L PE R QA RF + E D++VA+DA+GM
Sbjct: 482 VAFSRKLVLELKGMLESAGKSV-SVVYGALSPEVRREQARRFREG--EADIMVATDAVGM 538
Query: 304 GLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLL 363
GLNL + F T +KFDG++ R L V EVKQI GRAGR+G GE+T LD + L +
Sbjct: 539 GLNLPAHTLCFYTDEKFDGIQNRQLKVQEVKQIGGRAGRFGHH-NSGEITALDPQTLKSI 597
Query: 364 HKSLLEP-SPM-LESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCE 421
+ P +P+ L + P+ D + S L + SL F N E + +
Sbjct: 598 RRLFNSPDAPVDLSQFQVRPSIDHLAAISELMGEPSLLRAWLTFNRNINYGEAFISVLPD 657
Query: 422 EVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKK 469
E+ + +ID + L ++ F +P+ D + +Q A + K+
Sbjct: 658 ELAEWIELIDDPKIPLWLRWTFACTPIRGGFDSPA---SQHAQRWIKR 702
>gi|359781543|ref|ZP_09284767.1| ATP-dependent RNA helicase [Pseudomonas psychrotolerans L19]
gi|359370607|gb|EHK71174.1| ATP-dependent RNA helicase [Pseudomonas psychrotolerans L19]
Length = 797
Score = 198 bits (503), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 129/387 (33%), Positives = 202/387 (52%), Gaps = 10/387 (2%)
Query: 66 HTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN 125
H YP AR+ R +GPTNSGKTH+++ + + + IY PLRL+A E +RL
Sbjct: 304 HQNYP-ARRLTRTWTALLGPTNSGKTHRSIEAMAAVTHAIYLSPLRLMALENQERLESLG 362
Query: 126 VSCDLITGQEREEVDGAKHRAVTVEMADVV--SDYDCAVIDEIQMLGCKTRGFSFTRALL 183
V C L+TG+E GA H TVE ++ V+DE+QML RG+++ AL+
Sbjct: 363 VPCSLVTGEEEIIRPGATHFCCTVEEFARFRRQQWEVVVVDEVQMLADPQRGWAWVDALV 422
Query: 184 GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCI 243
L + G P ++ + ++ D ++++ +RLSP V + + ++ G +
Sbjct: 423 SAHTKRLLMTGPALIEPSLRTLCELCEDRLEIKPTKRLSP-VTVARHATTLERLEPGSLL 481
Query: 244 VTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM 303
V FSR + LK +E G+ + S+VYG+L PE R QA RF + +E ++VA+DA+GM
Sbjct: 482 VAFSRRVVLELKGLLEMAGRRV-SVVYGALSPEVRREQARRFREGETE--IMVATDAVGM 538
Query: 304 GLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLL 363
GLNL + F T +KFDGVE R L V EVKQI GRAGR+G GE+T L+ L +
Sbjct: 539 GLNLPAHTLCFYTDEKFDGVENRPLRVQEVKQIGGRAGRFGHH-AEGEITALEPHVLRNI 597
Query: 364 HKSLLEP-SPM-LESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCE 421
+ P P+ L + P+ + + S + SL F N + + +
Sbjct: 598 KRLFHSPDDPVDLHQFQVRPSLEHLRALSEFMEEPSLLRTWLTFNRNINYGDAFVSVLPD 657
Query: 422 EVLKVATVIDQLPLRLHEKYLFCISPV 448
E+ + +ID + +++F +P+
Sbjct: 658 ELAEWIKLIDLPGIDFQLRWIFACTPI 684
>gi|401408093|ref|XP_003883495.1| hypothetical protein NCLIV_032500 [Neospora caninum Liverpool]
gi|325117912|emb|CBZ53463.1| hypothetical protein NCLIV_032500 [Neospora caninum Liverpool]
Length = 1735
Score = 189 bits (481), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 139/228 (60%), Gaps = 1/228 (0%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
DL P +YP AR+ R++ HVGP NSGKT A+ L S+S+G Y PLRLLAWEV
Sbjct: 613 LADLRGPAAFYPSARQMSRQLYAHVGPPNSGKTASAVKALLSASTGCYLAPLRLLAWEVY 672
Query: 119 KRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSF 178
+L K L+TGQER+ H TVE A + + CAV+DE Q++ RG ++
Sbjct: 673 VQLKKEGKRVSLVTGQERQICPDWTHLCCTVETAPLDRRFACAVLDEAQLVASAQRGDAW 732
Query: 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQ 238
T A+LG+ A ELH+C + A PL++++ + GD V Y RLSP+ + P+ + + +
Sbjct: 733 TNAILGLQAEELHVCCEERATPLLEKLAKACGDSFAVHVYRRLSPIRVDDGPVETLEDFR 792
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFN 286
TGDC++ F+R + RLK+ +E G +C+ VYG LPP + RQA +FN
Sbjct: 793 TGDCLLCFTRLDVLRLKRKLERLGFQVCA-VYGHLPPAIKQRQARKFN 839
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 87/191 (45%), Gaps = 28/191 (14%)
Query: 289 SSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFP 348
+S VL+++DA+GMGLNL I R++F + KF G R LTV E++Q+ GRAGR G F
Sbjct: 956 ASRKTVLISTDAVGMGLNLEIRRVVFWRLHKFSGTAKRPLTVAELRQLGGRAGRRGRLFG 1015
Query: 349 V--GEVTCLDSEDLPLLHKSLLEPSPM--LESAGLFPNF--------------------- 383
G VTC+ ED L ++ SP+ L A L P+
Sbjct: 1016 EEGGRVTCIAGEDFRRLKEAFDGSSPLAPLTKAALLPSLAQLLAFCDELRRGGVFGESRP 1075
Query: 384 -DLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFA--NCEEVLKVATVIDQLPLRLHEK 440
D+ S H L+ F + A + ++F +L V + LPL +
Sbjct: 1076 TDMASGVSSTHVGKFYSEALQLFCDLASIDAHFFVPRHKLNRMLTVLHALSDLPLSRQQL 1135
Query: 441 YLFCISPVDMN 451
+ F ++P+ +
Sbjct: 1136 FTFALAPLPLT 1146
>gi|390366013|ref|XP_001200039.2| PREDICTED: uncharacterized protein LOC763911 [Strongylocentrotus
purpuratus]
Length = 1104
Score = 185 bits (469), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 105/313 (33%), Positives = 163/313 (52%), Gaps = 54/313 (17%)
Query: 161 AVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYER 220
AVIDEIQML +RG+++TRALL
Sbjct: 125 AVIDEIQMLRDPSRGWAWTRALLD------------------------------------ 148
Query: 221 LSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 280
+ N++ GDCIV FS++ +Y + + + S GK C+++YGSLPP +
Sbjct: 149 ------------NLENVKPGDCIVAFSKNDLYSISRQLFSMGKE-CAVIYGSLPPGAKLS 195
Query: 281 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM-----KKFDGVELRDLTVPEVKQ 335
QA +FND +LVA+DAIGMGLNL+I R+IF ++ + E+ LT + Q
Sbjct: 196 QAAKFNDPDDPCKILVATDAIGMGLNLSIKRVIFKSLIRPYINEKGEKEMHRLTTSQALQ 255
Query: 336 IAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPD 395
IAGRAGR+ ++F GE T +DLPLL + L P +E+ GL P + I +++ PD
Sbjct: 256 IAGRAGRFRTQFEEGEATTFHGDDLPLLKEILANPVEKIEAGGLHPTAEQIELFAYHLPD 315
Query: 396 SSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDIS 455
++L ++E F+ + + +NYF N ++ +A +I +PL L +Y+FC +P++
Sbjct: 316 ATLSNLIEIFINLSIVEKNYFVCNVDDFKFLADMIQHVPLHLRARYVFCCAPINRKLPFI 375
Query: 456 SQGLTQFATNYSK 468
+FA YS+
Sbjct: 376 CTMFLKFARQYSR 388
>gi|331250563|ref|XP_003337889.1| hypothetical protein PGTG_19382 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309316879|gb|EFP93470.1| hypothetical protein PGTG_19382 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 439
Score = 184 bits (467), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 121/326 (37%), Positives = 175/326 (53%), Gaps = 19/326 (5%)
Query: 158 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQS 217
YD VIDEIQM+G RG ++T+A+LG+ A ELHLCG+ + V LI+ + D+ +
Sbjct: 8 YDVVVIDEIQMIGDHFRGDAWTQAVLGVQAKELHLCGEESVVGLIESLANSCQDEFILHR 67
Query: 218 YERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 276
Y+RL+PL + L G S +Q GDC+VTFSR+ IY LKKAI+S + YG LPPE
Sbjct: 68 YQRLTPLKVADSSLKGDLSKVQRGDCLVTFSRNNIYALKKAIQSATDLRVGMAYGGLPPE 127
Query: 277 TRTRQATRFN-----DASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVP 331
R R+A FN + +DVLV SDAIGMGLNL I R+IF ++ KFDG L+
Sbjct: 128 VREREAQMFNLGSQVEGEGGYDVLVGSDAIGMGLNLKIKRVIFQSLHKFDGRNEVALSTS 187
Query: 332 EVKQIAGRAGRYG---SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFP----NFD 384
++K I GRAGR+G GE + E+ + + + + ES L P F+
Sbjct: 188 QIKLIGGRAGRFGILPKNVGPGE-SGESREEGSTVGRRVDDERDGYES--LTPIDGAPFE 244
Query: 385 LIYMYSRLHPDSSLYGILEHFLENA-KLSE-NYFFANCEEVLKVATVIDQ-LPLRLHEKY 441
I P +++ G+ L + L+ Y + + +A + LPL L E+
Sbjct: 245 KIERAVLKAPFTTVEGLARRALPGSLTLTRPEYAIGDEKNSGSIADALQHILPLSLSERD 304
Query: 442 LFCISPVDMNDDISSQGLTQFATNYS 467
LFC +P ++ L Q+A ++
Sbjct: 305 LFCSAPASARSPVAISALQQWANAHA 330
>gi|380472006|emb|CCF47001.1| ATP-dependent RNA helicase SUV3, partial [Colletotrichum
higginsianum]
Length = 419
Score = 184 bits (466), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 118/340 (34%), Positives = 174/340 (51%), Gaps = 47/340 (13%)
Query: 130 LITGQEREEVDGAKHR-AVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN 188
+ITG+E+ D + + TVEM + D AV+DEIQM+ + RG+++++ALLG+ A
Sbjct: 1 MITGEEQRIPDSDNYFISCTVEMTPLNRLVDVAVLDEIQMISDRDRGWAWSQALLGVMAK 60
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFS 247
E+HLCG+ V LI+ I G+ V Y+RLSPL + L + ++ GD +V F+
Sbjct: 61 EVHLCGEERVVDLIKSICSSIGEKCIVHRYQRLSPLQTMKKSLKNDLTKLRKGDAVVAFT 120
Query: 248 RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307
R ++ L FND +E+D LVASDAIGMGLNL
Sbjct: 121 RVNLHAL------------------------------FNDPDNEYDFLVASDAIGMGLNL 150
Query: 308 NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY-----------GSKFP---VGEVT 353
I R+IF T K DG + R LT E+KQI GRAGRY G+ P +G VT
Sbjct: 151 EIKRVIFETATKHDGTQYRTLTTSEIKQIGGRAGRYKTARQAATDPNGTAAPEEKMGYVT 210
Query: 354 CLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSR-LHPDSSLYGILEHFLENAKLS 412
L +DLP++ K+ + L+ A + P +I +S PD+ L IL E A +S
Sbjct: 211 TLVDDDLPIIEKAFNSETQPLDVATIHPPASVIEQFSEYFPPDTPLSFILLRLRELAPVS 270
Query: 413 ENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMND 452
+ Y E L++A I + P+ + E+ +P + +
Sbjct: 271 QRYSVYISELSLEIADAIQEFPMTIQERITILHAPASLRE 310
>gi|294886391|ref|XP_002771694.1| ATP-dependent RNA and DNA helicase, putative [Perkinsus marinus
ATCC 50983]
gi|239875416|gb|EER03510.1| ATP-dependent RNA and DNA helicase, putative [Perkinsus marinus
ATCC 50983]
Length = 219
Score = 183 bits (465), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 137/222 (61%), Gaps = 8/222 (3%)
Query: 95 LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADV 154
+ L ++S G+YCGPLRLLAW+ + L + DLITGQ+ E G H + TVEM
Sbjct: 1 MQALRTASRGVYCGPLRLLAWQCFEDLKAMGLDSDLITGQDTETGVGT-HLSCTVEMCPG 59
Query: 155 VS--DYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDD 212
+YD VIDE+Q++G + RG ++TRA+L + A E+HLCGD A L++ +L +
Sbjct: 60 PGSVEYDVGVIDEVQLVGDRERGGAWTRAILALPAREIHLCGDGRATELVETLLGTYRPN 119
Query: 213 ---VKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 269
V+ + Y RLSPL +GS+ +++ GDC+V FSR I R+K IE + +V
Sbjct: 120 DVVVRHKPYSRLSPLFLSGKAIGSYRSLRRGDCVVVFSRWDIMRVKADIERSTRWRVCVV 179
Query: 270 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
YG+LPPETR Q FN EFDVLVASD IG+GLN NI R
Sbjct: 180 YGTLPPETRRDQINSFN--RQEFDVLVASDCIGLGLNFNIRR 219
>gi|340506600|gb|EGR32704.1| dpse - suppressor of 3-like 1, putative [Ichthyophthirius
multifiliis]
Length = 412
Score = 182 bits (463), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 106/310 (34%), Positives = 172/310 (55%), Gaps = 23/310 (7%)
Query: 157 DYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQ 216
D+D A+IDEIQ + + RG ++T LLG+ A E+HLCGD +A+ ++Q I + GDD +
Sbjct: 2 DFDIAIIDEIQQINNEERGSAWTTTLLGLKAKEIHLCGDSSAIDIVQNICKTQGDDFECY 61
Query: 217 SYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE--SRGK------HLCSI 268
YER+S L +++ GDC + FS + I+ L+K I S K + CSI
Sbjct: 62 QYERMSELKVRKDEYKLNQDLKEGDCFICFSINDIFALQKKINDISNQKFKTCKINYCSI 121
Query: 269 VYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDL 328
+YG P E + +QA FN ++F L+++DAIGMG+NLNI RI+F+ + K + L
Sbjct: 122 IYGRQPFEIKIQQADLFNSQQNKF--LISTDAIGMGINLNIKRIVFTNIYKLQQNVMNRL 179
Query: 329 TVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLES----AGLFPNFD 384
++QIAGRAGRY GEV + + ++ K+L + S A + P+FD
Sbjct: 180 DFSAIQQIAGRAGRYQEN---GEVCAFYQDQIRIIQKALNDQSNQNRQQKIKAAIEPSFD 236
Query: 385 LIY----MYSRLHPDSS--LYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLH 438
I + +++P+ S L I + F E + + + YF+++C+++ +I + L L
Sbjct: 237 QILETKSLLEQIYPNRSFNLIDIFQKFAELSCIDDIYFYSSCQDMQFRLNLIQKYNLSLE 296
Query: 439 EKYLFCISPV 448
++Y F P+
Sbjct: 297 DQYRFGKCPI 306
>gi|444725157|gb|ELW65735.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial [Tupaia
chinensis]
Length = 619
Score = 181 bits (459), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 110/296 (37%), Positives = 165/296 (55%), Gaps = 44/296 (14%)
Query: 165 EIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL 224
E+Q LG L G+CA E+HLCG+ AA+ L+ +++ TG++V+V++Y+RL+P+
Sbjct: 230 EVQKLGADY-------GLDGLCAEEVHLCGESAAIDLVTELMYTTGEEVEVRTYDRLTPI 282
Query: 225 VPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATR 284
L+ L + N++ GDCIV FS++ IY + + IE RG +++YGSLPP T+ QA +
Sbjct: 283 SVLDRALETLDNLRPGDCIVCFSKNDIYSVSRQIEIRGLE-SAVIYGSLPPGTKLAQAKK 341
Query: 285 FNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGVELRDLTVPEVKQIAGR 339
FND +LVA+DAIGMGLNL+I RIIF ++ K E+ +T + QIAGR
Sbjct: 342 FNDPDDPCKILVATDAIGMGLNLSIKRIIFYSLMKPSINEKGEREIEPITTSQALQIAGR 401
Query: 340 AGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLY 399
AGR+ S+F GEVT ++ EDL LL + L P + P
Sbjct: 402 AGRFSSQFKEGEVTTMNREDLGLLKEILNRP---------------------VDP----- 435
Query: 400 GILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDIS 455
I + F++ +++ YF N ++ A +I +PL L Y F +DM D S
Sbjct: 436 -IRDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVSYRF----LDMFPDAS 486
>gi|237837649|ref|XP_002368122.1| helicase, putative [Toxoplasma gondii ME49]
gi|211965786|gb|EEB00982.1| helicase, putative [Toxoplasma gondii ME49]
gi|221509112|gb|EEE34681.1| helicase, putative [Toxoplasma gondii VEG]
Length = 1779
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/228 (43%), Positives = 140/228 (61%), Gaps = 1/228 (0%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
DL P ++P AR R+V HVGP NSGKT A+ L ++S+G Y PLRLLAWEV
Sbjct: 660 LADLRGPAGFFPSARHMPRQVYAHVGPPNSGKTANAVEALRNASTGCYLAPLRLLAWEVY 719
Query: 119 KRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSF 178
+L + L+TGQER +G H TVEMA + + CAV+DE Q+L RG ++
Sbjct: 720 VQLKREGKRVALVTGQERVVCEGWTHLCCTVEMAPLDRRFACAVLDEAQLLANSQRGDAW 779
Query: 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQ 238
T ALLG+ A ELH+C + A+ L++ + Q GD + Y+RLSP+ P+ +++
Sbjct: 780 TNALLGLQAEELHVCSEVRALHLLETLAQECGDRFVGRVYQRLSPISVDAGPVARLEDLE 839
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFN 286
TGDC++ F+R + RLK+ +E G H+C+ VYG LPP + RQA +FN
Sbjct: 840 TGDCLLCFTRLDVLRLKRKLELLGFHVCA-VYGHLPPAIKQRQARKFN 886
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 90/190 (47%), Gaps = 28/190 (14%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKF--PVGE 351
VL+++DA+GMGLNL I R++F ++KF G R LTV E++Q+ GRAGR G F G
Sbjct: 1006 VLISTDAVGMGLNLEIRRVVFWRLQKFSGTTKRPLTVSELRQLGGRAGRRGRVFGEEGGR 1065
Query: 352 VTCLDSEDLPLLHKSLLEPSPM--LESAGLFPNFDLIYM--------------------- 388
VTC++ ED L + SP+ L+ A L P +
Sbjct: 1066 VTCMEGEDFLRLKAAFESASPLSPLKKAALLPPMAQLVRFCEELRRGGLLCESAGRGETN 1125
Query: 389 -YSRLHPDSSLYGILEHFLENAKLSENYFFA--NCEEVLKVATVIDQLPLRLHEKYLFCI 445
+S H S ++ F + A + + +F +L V + LPL + + F +
Sbjct: 1126 GFSSRHVGSFYAEAIQLFCDLAAVDDAFFVPRHKLNRMLTVLHALADLPLSRQQLFTFAL 1185
Query: 446 SPVDMNDDIS 455
+P+ ++ ++
Sbjct: 1186 APLPLSTPLA 1195
>gi|221488613|gb|EEE26827.1| helicase, putative [Toxoplasma gondii GT1]
Length = 1781
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 99/228 (43%), Positives = 140/228 (61%), Gaps = 1/228 (0%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
DL P ++P AR R+V HVGP NSGKT A+ L ++S+G Y PLRLLAWEV
Sbjct: 660 LADLRGPAGFFPSARHMPRQVYAHVGPPNSGKTANAVEALRNASTGCYLAPLRLLAWEVY 719
Query: 119 KRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSF 178
+L + L+TGQER +G H TVEMA + + CAV+DE Q+L RG ++
Sbjct: 720 VQLKREGKRVALVTGQERVVCEGWTHLCCTVEMAPLDRRFACAVLDEAQLLANSQRGDAW 779
Query: 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQ 238
T ALLG+ A ELH+C + A+ L++ + Q GD + Y+RLSP+ P+ +++
Sbjct: 780 TNALLGLQAEELHVCSEVRALHLLETLAQECGDRFVGRVYQRLSPISVDAGPVARLEDLE 839
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFN 286
TGDC++ F+R + RLK+ +E G H+C+ VYG LPP + RQA +FN
Sbjct: 840 TGDCLLCFTRLDVLRLKRKLELLGFHVCA-VYGHLPPAIKQRQARKFN 886
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 54/190 (28%), Positives = 91/190 (47%), Gaps = 28/190 (14%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKF--PVGE 351
+L+++DA+GMGLNL+I R++F ++KF G R LTV E++Q+ GRAGR G F G
Sbjct: 1006 ILISTDAVGMGLNLDIRRVVFWRLQKFSGTTKRPLTVSELRQLGGRAGRRGRVFGEEGGR 1065
Query: 352 VTCLDSEDLPLLHKSLLEPSPM--LESAGLFPNFDLIYM--------------------- 388
VTC++ ED L + SP+ L+ A L P +
Sbjct: 1066 VTCMEGEDFLRLKAAFESASPLSPLKKAALLPPMAQLVRFCEELRRGGLLCESAGRGETN 1125
Query: 389 -YSRLHPDSSLYGILEHFLENAKLSENYFFA--NCEEVLKVATVIDQLPLRLHEKYLFCI 445
+S H S ++ F + A + + +F +L V + LPL + + F +
Sbjct: 1126 GFSSRHVGSFYAEAIQLFCDLASVDDAFFVPRHKLNRMLTVLHALADLPLSRQQLFTFAL 1185
Query: 446 SPVDMNDDIS 455
+P+ ++ ++
Sbjct: 1186 APLPLSTPLA 1195
>gi|70944747|ref|XP_742271.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56521155|emb|CAH82418.1| hypothetical protein PC000387.05.0 [Plasmodium chabaudi chabaudi]
Length = 442
Score = 177 bits (449), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 88/229 (38%), Positives = 139/229 (60%), Gaps = 6/229 (2%)
Query: 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
DFT++ + RK+ L+VGPTNSGKTH+A ++ S +G+YC PLRLL WE+
Sbjct: 208 DFTEINEIR---KMKNNLNRKLYLYVGPTNSGKTHEAFNKFIDSKNGLYCSPLRLLTWEI 264
Query: 118 AKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
K+L S +L+TGQE + + H T+EM + YDCA+IDEIQM+ RG++
Sbjct: 265 HKKLLNLKKSANLLTGQEIIKKANSTHTVCTIEMTPLNEKYDCAIIDEIQMINNSIRGYA 324
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNI 237
+T L+ + E++LCG V LI+++ + D V ++ ++RL+ L L + ++
Sbjct: 325 WTHVLMNLKCEEIYLCGSEHIVNLIKELSDILHDQVIIKRFKRLNKL-KLEKNIQPLDDV 383
Query: 238 QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFN 286
+TG CI++FSR+ I LK +E K + ++YG+LPPE++ +Q FN
Sbjct: 384 KTG-CIISFSRNNIMLLKNKLEKLNKRV-FVIYGTLPPESKKKQIELFN 430
>gi|299470377|emb|CBN78426.1| ATP-dependent RNA helicase, mitochondrial, putative [Ectocarpus
siliculosus]
Length = 745
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 89/198 (44%), Positives = 128/198 (64%), Gaps = 11/198 (5%)
Query: 55 KKFD-FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSS---------G 104
K+ D DL P +PLAR + R++I H GPTNSGKT+QA+ RL+ + + G
Sbjct: 547 KRMDSIVDLRNPQQGFPLARLRKRRIIYHGGPTNSGKTYQAIERLKKAGADRQPGDGPAG 606
Query: 105 IYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVID 164
++CGPLRLLA EV ++LN V C L+TGQE+ EV A H + T+EMA V++Y+ AVID
Sbjct: 607 LFCGPLRLLALEVYEQLNSQGVYCSLMTGQEKREVPFATHVSCTIEMASTVNEYEVAVID 666
Query: 165 EIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPL 224
EIQML + RG S+T A+LG+ E+H+CG L++ + + TGDD +++ Y+R + L
Sbjct: 667 EIQMLADEQRGPSWTSAVLGLNCPEIHVCGGMEGAVLVEAMAKETGDDFELREYQRKTEL 726
Query: 225 VPLNVPLG-SFSNIQTGD 241
V LG ++ NIQ G+
Sbjct: 727 VCAEESLGNNYKNIQPGE 744
>gi|116246424|ref|XP_001230325.1| Anopheles gambiae str. PEST AGAP012862-PA [Anopheles gambiae str.
PEST]
gi|116133432|gb|EAU78020.1| AGAP012862-PA [Anopheles gambiae str. PEST]
Length = 421
Score = 171 bits (432), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 102/309 (33%), Positives = 176/309 (56%), Gaps = 17/309 (5%)
Query: 183 LGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDC 242
+G+ A L++ G P +PLI++I ++ D + + ER SPL + P+ +++ GD
Sbjct: 1 MGVPARHLYILGAPDCIPLIRRIAELCDDPLDEITLERKSPLRAASAPV-RLRDLEAGDA 59
Query: 243 IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 302
++ FSR + L+ + + GK + ++VYG+L PE R +A RFN+ +E +LVA+DAIG
Sbjct: 60 LIAFSRREVLDLRAELLTLGKRV-AVVYGALSPEVRRAEAARFNNGEAE--ILVATDAIG 116
Query: 303 MGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPL 362
MGLNL+I R++FS ++K+DG + RDLT E+KQI GRAGRYG G V L P
Sbjct: 117 MGLNLSIKRVVFSALRKYDGKQTRDLTAQEIKQIGGRAGRYGH-HENGIVAVLGEAGTPA 175
Query: 363 LHKSLLE--PSPMLESAGLF-PNFDLIYMYSRLHPDSSLYGILEHFLENAKLSE--NYFF 417
+ +L P P+ E L P+ D++ + SLYG+L ++ NY
Sbjct: 176 HIRKMLAAPPEPITELRPLVQPDSDIVRAVAEEIETDSLYGVLVRIKRAVLRADDPNYRL 235
Query: 418 ANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFATNYSKKGIVQLRE 476
A+ ++ ++A+ ++ + L L +++++ + P+D D+ ++ L +A++++ R
Sbjct: 236 ADMDQAFEIASALEGVEGLSLTQRWVYAMCPIDERDNGIAR-LVGWASDHAAG-----RR 289
Query: 477 IFTPGLGSL 485
+ PG G L
Sbjct: 290 VPPPGTGRL 298
>gi|430811994|emb|CCJ30590.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 246
Score = 168 bits (426), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 82/185 (44%), Positives = 123/185 (66%), Gaps = 2/185 (1%)
Query: 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVA 118
+D+ P W+P AR R LH+GPTNSGKT+QAL +LE + SG + GPLRLLA E+
Sbjct: 62 ISDMRYPSEWFPNARAIERSWYLHIGPTNSGKTYQALKKLEKARSGWFAGPLRLLAHEIF 121
Query: 119 KRLNKANVSCDLITGQEREEVD-GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFS 177
++ K + C+LITG+E++ +D A TVEM ++ D VIDE+QM+ RG++
Sbjct: 122 DKMMKKGIVCNLITGEEQKIIDKNAALHISTVEMVNLDKLMDIIVIDEVQMIADPHRGWA 181
Query: 178 FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPL-GSFSN 236
+T+ LLG+ A+E+HLCG+ ++V LI +I + G+ VK+ Y+RL+PL PL L G +
Sbjct: 182 WTQVLLGVQASEIHLCGEESSVELILKIAKSMGEKVKIYHYKRLNPLEPLKQSLYGDLTK 241
Query: 237 IQTGD 241
+++GD
Sbjct: 242 VESGD 246
>gi|384500999|gb|EIE91490.1| hypothetical protein RO3G_16201 [Rhizopus delemar RA 99-880]
Length = 158
Score = 164 bits (416), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 80/158 (50%), Positives = 111/158 (70%), Gaps = 1/158 (0%)
Query: 151 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTG 210
MA + D AVIDEIQM+ + RG+++T+A LG+ A ++HLCG+ AAVPLI++I + G
Sbjct: 1 MASLGKPLDVAVIDEIQMIADRDRGWAWTQAFLGLKAKQIHLCGEEAAVPLIEKICRDLG 60
Query: 211 DDVKVQSYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIV 269
++V V YERL+P + L S ++ GDC++ FSR I+ +K++IE+ C+++
Sbjct: 61 EEVVVNRYERLTPYSVSDKTLRADLSKVEKGDCVIAFSRGGIFDVKRSIEAVTDLKCAVI 120
Query: 270 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307
YGSLPPETR QA FND S FDVLVASDA+GMGLNL
Sbjct: 121 YGSLPPETRALQAKAFNDPDSGFDVLVASDAVGMGLNL 158
>gi|406706852|ref|YP_006757205.1| helicase family protein [alpha proteobacterium HIMB5]
gi|406652628|gb|AFS48028.1| helicase family protein [alpha proteobacterium HIMB5]
Length = 827
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 115/301 (38%), Positives = 161/301 (53%), Gaps = 15/301 (4%)
Query: 75 KVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD---LI 131
K K+ +GPTN+GKTH A+ + S SGI PLRLLA EV +++ K VS D LI
Sbjct: 2 KKNKITAVLGPTNTGKTHLAIETMLSFESGIIGFPLRLLAREVYEKVIKK-VSLDKVALI 60
Query: 132 TGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH 191
TG+E+ AK+ TVE + D +DEIQM RG FT LL + +L
Sbjct: 61 TGEEKIIPPNAKYFLCTVESMPIDKLVDFVGVDEIQMCADHERGHIFTDRLLNMRGEKLT 120
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
+ I+ I+ DD++ + ERLS L S I I+ FS +
Sbjct: 121 ML---MGSNTIKNIISNLDDDIEFINRERLSKLTY--AGHKKISRINRKTAIIAFSAEEV 175
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R K ++V GSL P+TR Q + S + D LVA+DAIGMG+N+++
Sbjct: 176 YAIAELI-RRQKGGAAVVMGSLSPKTRNAQVELY--QSGDVDFLVATDAIGMGINMDLDY 232
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ FS +KKFDG +LR L++ E+ QIAGRAGRY GS GE + +E++ L+
Sbjct: 233 VYFSNLKKFDGKKLRKLSLSEIGQIAGRAGRYLNNGSFGITGECKEISAEEVDLIENHKF 292
Query: 369 E 369
E
Sbjct: 293 E 293
>gi|71083132|ref|YP_265851.1| ATP-dependent helicase [Candidatus Pelagibacter ubique HTCC1062]
gi|71062245|gb|AAZ21248.1| ATP-dependent helicase [Candidatus Pelagibacter ubique HTCC1062]
Length = 826
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 114/303 (37%), Positives = 161/303 (53%), Gaps = 15/303 (4%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD---LITGQ 134
K+ +GPTN+GKT+ A+ + S SG+ PLRLLA EV ++ K +S D LITG+
Sbjct: 5 KITAVLGPTNTGKTYLAIETMLSFDSGMIGFPLRLLAREVYDKIIKK-ISSDKVALITGE 63
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCG 194
E+ AK+ TVE + D IDEIQM RG FT LL + +L +
Sbjct: 64 EKIIPPNAKYFLCTVESMPINKHLDFVGIDEIQMCADHERGHIFTDRLLNLRGEKLTMFM 123
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
+ I+ I+ +D + + ERLS L V S I I+ FS +Y +
Sbjct: 124 GSST---IKNIVNKLNEDTEFINRERLSKLTY--VGHKKISRINRKTAIIAFSTEEVYAI 178
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ + R K +IV GSL P+TR Q + S + D LVA+DAIGMG+N+++ + F
Sbjct: 179 AELVR-RQKGGAAIVMGSLSPKTRNAQVELY--QSGDVDFLVATDAIGMGINMDLENVYF 235
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPS 371
S +KKFDG +LR L + E+ QIAGRAGRY GS G+ + +E++ LL E
Sbjct: 236 SNLKKFDGKKLRRLNMSEIGQIAGRAGRYLNDGSFGVTGDCKDISAEEVELLENHKFEEI 295
Query: 372 PML 374
ML
Sbjct: 296 RML 298
>gi|91762441|ref|ZP_01264406.1| ATP-dependent helicase [Candidatus Pelagibacter ubique HTCC1002]
gi|91718243|gb|EAS84893.1| ATP-dependent helicase [Candidatus Pelagibacter ubique HTCC1002]
Length = 826
Score = 161 bits (408), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 113/303 (37%), Positives = 162/303 (53%), Gaps = 15/303 (4%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD---LITGQ 134
K+ +GPTN+GKT+ A+ + S SG+ PLRLLA EV ++ K +S D LITG+
Sbjct: 5 KITAVLGPTNTGKTYLAIETMLSFDSGMIGFPLRLLAREVYDKIIKK-ISSDKVALITGE 63
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCG 194
E+ AK+ TVE + D IDEIQM RG FT LL + +L +
Sbjct: 64 EKIIPPNAKYFLCTVESMPINKHLDFVGIDEIQMCADHERGHIFTDRLLNLRGEKLTMFM 123
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
+ I++I+ +D + + ERLS L V S I I+ FS +Y +
Sbjct: 124 GSST---IKKIVNKLNEDTEFINRERLSKLTY--VGHKKISRINRKTAIIAFSTEEVYAI 178
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ + R K +IV GSL P+TR Q + S + D LVA+DAIGMG+N+++ + F
Sbjct: 179 AELVR-RQKGGAAIVMGSLSPKTRNAQVELY--QSGDVDFLVATDAIGMGINMDLENVYF 235
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPS 371
S +KKFDG +LR L + E+ QIAGRAGRY G+ G+ + +E++ LL E
Sbjct: 236 SNLKKFDGKKLRRLNMSEIGQIAGRAGRYLNDGNFGVTGDCKDISAEEVELLENHKFEEI 295
Query: 372 PML 374
ML
Sbjct: 296 RML 298
>gi|254456336|ref|ZP_05069765.1| helicase, putative [Candidatus Pelagibacter sp. HTCC7211]
gi|207083338|gb|EDZ60764.1| helicase, putative [Candidatus Pelagibacter sp. HTCC7211]
Length = 826
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 112/298 (37%), Positives = 156/298 (52%), Gaps = 15/298 (5%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD---LITGQ 134
K+ +GPTN+GKTH A+ + S +G+ PLRLLA EV ++ K +S D LITG+
Sbjct: 5 KITAILGPTNTGKTHLAIETMLSFDTGMIGFPLRLLAREVYDKVIKK-ISIDKVALITGE 63
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCG 194
E+ AK+ TVE + + +DEIQM RG FT LL + +L +
Sbjct: 64 EKIIPQNAKYFLCTVESMPIDKHLEFVGVDEIQMCADHERGHIFTDRLLNMRGEKLTML- 122
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
I+ I+ DVK + RLS L S I I+ FS +Y +
Sbjct: 123 --MGSNTIKNIISKLDADVKFINRNRLSKLTY--TGHKKISRINRKTAIIAFSAEEVYAI 178
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ I R K +IV GSL P+TR Q + S + D LVA+DAIGMG+N+++ + F
Sbjct: 179 AELIR-RQKGGAAIVMGSLSPKTRNAQVELY--QSGDVDFLVATDAIGMGINMDLDHVFF 235
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLE 369
S +KKFDG +LR L + E+ QIAGRAGRY G+ G+ + SED+ LL E
Sbjct: 236 SNLKKFDGKKLRKLNLSEIGQIAGRAGRYLNDGNFGITGDCKEITSEDVELLENHKFE 293
>gi|338707936|ref|YP_004662137.1| helicase domain-containing protein [Zymomonas mobilis subsp.
pomaceae ATCC 29192]
gi|336294740|gb|AEI37847.1| helicase domain protein [Zymomonas mobilis subsp. pomaceae ATCC
29192]
Length = 926
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 123/342 (35%), Positives = 181/342 (52%), Gaps = 41/342 (11%)
Query: 79 VILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQER 136
VI +GPTN+GKTH A+ R+ + SSG+ PLRLLA EV R+ K LITG+E+
Sbjct: 10 VIAVLGPTNTGKTHLAVERMCAYSSGVIGFPLRLLAREVYDRVVAIKGKERVALITGEEK 69
Query: 137 EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGC-KTRGFSFTRALLGICANELHL-CG 194
+ A++ T E + D+ A +DE+Q LGC + RG FT LL + E+ + G
Sbjct: 70 ILPEKAQYFLCTAESMPMDRDFAFAALDEVQ-LGCDRERGHVFTDRLLNLRGREVTMFLG 128
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
A PL+++++ +++ S R S L P S + IV FS +Y
Sbjct: 129 SDALRPLLRRLI----PGIEIVSRPRFSTL-SYTGP-AKLSRLPPRSAIVAFSAEEVYAT 182
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ + R + ++V G+L P TR Q F + E D LVA+DAIGMGLN++++ + F
Sbjct: 183 AEMLR-RLRGGAAVVMGALSPRTRNAQVEMFQ--AGEVDYLVATDAIGMGLNMDVTHVAF 239
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY---GS----KFPVGEVTCLDSEDLPLLHKSL 367
+++ KFDG +LR LT+ E+ QIAGRAGR+ GS ++P GE T L E++ + +
Sbjct: 240 ASLSKFDGRQLRRLTIAEMAQIAGRAGRFQRNGSFGVLQWP-GETTALREEEVSAIEEHR 298
Query: 368 LEPSPMLESAGLFPNFDLIYMYSR-LHPDSS----LYGILEH 404
P L Y+Y R PD+S L LEH
Sbjct: 299 FPP--------------LQYLYWRDGQPDTSNIDNLIASLEH 326
>gi|341613821|ref|ZP_08700690.1| ATP-dependent helicase [Citromicrobium sp. JLT1363]
Length = 879
Score = 155 bits (393), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 105/281 (37%), Positives = 148/281 (52%), Gaps = 13/281 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ SSG PLRLLA EV R+ K + LITG+ER E
Sbjct: 10 LGPTNTGKTHLAIERMCGHSSGAMGFPLRLLAREVYDRVVAIKGEKAVALITGEERIEPK 69
Query: 141 GAKHRAVTVE-MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAA 198
A++ T E M + IDE+Q+ + RG FT LL E L G A
Sbjct: 70 DARYFLCTAEAMPHDGGGHAFVAIDEVQLAADRERGHVFTDRLLNARGREETMLLGSATA 129
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
PLIQ ++ V++ R S L S + +V FS +Y + + +
Sbjct: 130 APLIQSLIP----HVELTERPRFSTLAHGGAK--KLSRLPKRSAVVAFSSEQVYAIAEML 183
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
R + ++V G+L PETR RQ F + E D +VA+DAIGMGLNL+++ + F+++
Sbjct: 184 R-RQRGGAAVVMGALSPETRNRQVELFQN--GEVDYIVATDAIGMGLNLDVTHVAFASLA 240
Query: 319 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359
KFDGV+ R LT E+ QIAGRAGR+ G + + +D
Sbjct: 241 KFDGVKRRRLTPSEMAQIAGRAGRHHRDGSFGALVGMGGQD 281
>gi|261219352|ref|ZP_05933633.1| helicase domain-containing protein [Brucella ceti M13/05/1]
gi|261322413|ref|ZP_05961610.1| helicase domain-containing protein [Brucella ceti M644/93/1]
gi|260924441|gb|EEX91009.1| helicase domain-containing protein [Brucella ceti M13/05/1]
gi|261295103|gb|EEX98599.1| helicase domain-containing protein [Brucella ceti M644/93/1]
Length = 887
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 162/307 (52%), Gaps = 19/307 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ S SG+ PLRLLA EV A+R+ ANVS L+T
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVS--LVT 73
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ GA++ TVE +D IDE+Q+ RG FT +L + E
Sbjct: 74 GEEKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETL 133
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +++++L+ V V + RLS L + + IV FS +
Sbjct: 134 LLGAATMRGILEKLLR----GVNVVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEV 187
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 188 YAIAELIR-RQRGGAAVVMGALSPRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDH 244
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + RDLT EV QIAGRAGR+ G+ G+V D E + +
Sbjct: 245 VAFAQNRKFDGYQFRDLTPAEVGQIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNF 304
Query: 369 EPSPMLE 375
+P +L+
Sbjct: 305 DPVKVLQ 311
>gi|148559358|ref|YP_001259613.1| photosynthesis protein modulator [Brucella ovis ATCC 25840]
gi|148370615|gb|ABQ60594.1| photosynthesis protein modulator [Brucella ovis ATCC 25840]
Length = 1003
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 111/301 (36%), Positives = 161/301 (53%), Gaps = 19/301 (6%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLITGQEREE 138
+GPTN+GKTH A+ R+ S SG+ PLRLLA EV A+R+ ANVS L+TG+E+
Sbjct: 2 LGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVS--LVTGEEKIV 59
Query: 139 VDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPA 197
GA++ TVE +D IDE+Q+ RG FT +L + E L G
Sbjct: 60 PPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETLLLGAAT 119
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
+++++L+ V V + RLS L L + + IV FS +Y + +
Sbjct: 120 MRGILEKLLR----GVNVVTRPRLSHLA--YAGLKKITRLPNRSAIVAFSADEVYAIAEL 173
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 317
I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++ + F+
Sbjct: 174 IR-RQRGGAAVVMGALSPRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQN 230
Query: 318 KKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPML 374
+KFDG + RDLT EV QIAGRAGR+ G+ G+V D E + + +P +L
Sbjct: 231 RKFDGYQFRDLTPAEVGQIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNFDPVKVL 290
Query: 375 E 375
+
Sbjct: 291 Q 291
>gi|354594358|ref|ZP_09012397.1| hypothetical protein CIN_10930 [Commensalibacter intestini A911]
gi|353672034|gb|EHD13734.1| hypothetical protein CIN_10930 [Commensalibacter intestini A911]
Length = 846
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/263 (38%), Positives = 142/263 (53%), Gaps = 12/263 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR--LNKANVSCDLITGQEREEVD 140
+GPTN+GKTH AL R+ + +SG PLRLLA E R L K LITG+E+
Sbjct: 15 LGPTNTGKTHLALERMMAHTSGTIGFPLRLLAKENYDRMVLIKGEQHVALITGEEKIIPP 74
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAV 199
AK + TVE D IDEIQ+ RG FT LL N E G
Sbjct: 75 KAKWFSCTVEAMPTHIPVDFVAIDEIQLCADPDRGHIFTDRLLHCRGNIETMFLGADTIT 134
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
P+++Q++ ++++ S RLS L F+ + IV FS + +Y + + I+
Sbjct: 135 PILKQLI----PNIEIDSRPRLSNLT--YTGFDKFTKLPPRSAIVAFSANEVYAIAEFIK 188
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R C+IV G L P TR Q + + E D LVA+DAIGMGLN+N++ + F+++ K
Sbjct: 189 RRHGG-CAIVMGRLSPRTRNAQMELYQN--KEVDYLVATDAIGMGLNMNVNHVAFASLSK 245
Query: 320 FDGVELRDLTVPEVKQIAGRAGR 342
+DG +LR+L E+ QIAGRAGR
Sbjct: 246 YDGRQLRNLYPSEIAQIAGRAGR 268
>gi|347529788|ref|YP_004836536.1| putative helicase [Sphingobium sp. SYK-6]
gi|345138470|dbj|BAK68079.1| putative helicase [Sphingobium sp. SYK-6]
Length = 916
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 106/284 (37%), Positives = 147/284 (51%), Gaps = 18/284 (6%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ SSG+ PLRLLA EV +R+ K L+TG+ER
Sbjct: 13 LGPTNTGKTHLAIERMCGHSSGLMGFPLRLLAREVYERVVRIKGADQVALLTGEERVIPP 72
Query: 141 GAKHRAVTVEMADV------VSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLC 193
A++ T E V + D+ +DEIQ+ RG FT R L E L
Sbjct: 73 AARYVLATAEAMPVRGGLGAMRDFAFVAVDEIQLAADPERGHVFTDRMLHARGREETMLL 132
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G + PL++ +L ++ S R S L S + IV FS +YR
Sbjct: 133 GSASMAPLVRSLLP----RAEIVSRPRFSTLRYAGA--AKLSRLPRRSAIVAFSVEEVYR 186
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + + R + ++V G+L P TR Q F + E D LVA+DAIGMGLNLN+ +
Sbjct: 187 VAELLR-RHRGGAAVVMGALSPATRNAQVAMFE--AGEVDYLVATDAIGMGLNLNVDHVA 243
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357
F++++KFDG R LTV E+ QIAGRAGR+ G+V LD
Sbjct: 244 FASLRKFDGQRTRRLTVAEMAQIAGRAGRHQRDGTFGDVGALDG 287
>gi|17986559|ref|NP_539193.1| ATP-dependent DNA helicase [Brucella melitensis bv. 1 str. 16M]
gi|17982167|gb|AAL51457.1| ATP-dependent DNA helicase [Brucella melitensis bv. 1 str. 16M]
Length = 1028
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 162/307 (52%), Gaps = 19/307 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ S SG+ PLRLLA EV A+R+ ANVS L+T
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVS--LVT 73
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ GA++ TVE +D IDE+Q+ RG FT +L + E
Sbjct: 74 GEEKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETL 133
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +++++L+ V V + RLS L + + IV FS +
Sbjct: 134 LLGAATMRGILEKLLR----GVNVVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEV 187
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 188 YAIAELIR-RQRGGAAVVMGALSPRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDH 244
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + RDLT EV QIAGRAGR+ G+ G+V D E + +
Sbjct: 245 VAFAQNRKFDGYQFRDLTPAEVGQIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNF 304
Query: 369 EPSPMLE 375
+P +L+
Sbjct: 305 DPVKVLQ 311
>gi|261754174|ref|ZP_05997883.1| helicase domain-containing protein [Brucella suis bv. 3 str. 686]
gi|261743927|gb|EEY31853.1| helicase domain-containing protein [Brucella suis bv. 3 str. 686]
Length = 980
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 162/307 (52%), Gaps = 19/307 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ S SG+ PLRLLA EV A+R+ ANVS L+T
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVS--LVT 73
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ GA++ TVE +D IDE+Q+ RG FT +L + E
Sbjct: 74 GEEKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETL 133
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +++++L+ V V + RLS L + + IV FS +
Sbjct: 134 LLGAATMRGILEKLLR----GVNVVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEV 187
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 188 YAIAELIR-RQRGGAAVVMGALSPRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDH 244
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + RDLT EV QIAGRAGR+ G+ G+V D E + +
Sbjct: 245 VAFAQNRKFDGYQFRDLTPAEVGQIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNF 304
Query: 369 EPSPMLE 375
+P +L+
Sbjct: 305 DPVKVLQ 311
>gi|225853219|ref|YP_002733452.1| ATP-dependent helicase [Brucella melitensis ATCC 23457]
gi|256263292|ref|ZP_05465824.1| ATP-dependent helicase [Brucella melitensis bv. 2 str. 63/9]
gi|260565736|ref|ZP_05836219.1| ATP-dependent helicase [Brucella melitensis bv. 1 str. 16M]
gi|265991799|ref|ZP_06104356.1| helicase domain-containing protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|384212129|ref|YP_005601212.1| ATP-dependent helicase [Brucella melitensis M5-90]
gi|384409230|ref|YP_005597851.1| ATP-dependent helicase [Brucella melitensis M28]
gi|225641584|gb|ACO01498.1| ATP-dependent helicase [Brucella melitensis ATCC 23457]
gi|260151109|gb|EEW86204.1| ATP-dependent helicase [Brucella melitensis bv. 1 str. 16M]
gi|263002755|gb|EEZ15158.1| helicase domain-containing protein [Brucella melitensis bv. 1 str.
Rev.1]
gi|263093258|gb|EEZ17355.1| ATP-dependent helicase [Brucella melitensis bv. 2 str. 63/9]
gi|326409777|gb|ADZ66842.1| ATP-dependent helicase [Brucella melitensis M28]
gi|326539493|gb|ADZ87708.1| ATP-dependent helicase [Brucella melitensis M5-90]
Length = 1028
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 162/307 (52%), Gaps = 19/307 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ S SG+ PLRLLA EV A+R+ ANVS L+T
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVS--LVT 73
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ GA++ TVE +D IDE+Q+ RG FT +L + E
Sbjct: 74 GEEKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETL 133
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +++++L+ V V + RLS L + + IV FS +
Sbjct: 134 LLGAATMRGILEKLLR----GVNVVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEV 187
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 188 YAIAELIR-RQRGGAAVVMGALSPRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDH 244
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + RDLT EV QIAGRAGR+ G+ G+V D E + +
Sbjct: 245 VAFAQNRKFDGYQFRDLTPAEVGQIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNF 304
Query: 369 EPSPMLE 375
+P +L+
Sbjct: 305 DPVKVLQ 311
>gi|384445782|ref|YP_005604501.1| ATP-dependent helicase [Brucella melitensis NI]
gi|349743771|gb|AEQ09314.1| ATP-dependent helicase [Brucella melitensis NI]
Length = 1028
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 162/307 (52%), Gaps = 19/307 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ S SG+ PLRLLA EV A+R+ ANVS L+T
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVS--LVT 73
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ GA++ TVE +D IDE+Q+ RG FT +L + E
Sbjct: 74 GEEKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETL 133
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +++++L+ V V + RLS L + + IV FS +
Sbjct: 134 LLGAATMRGILEKLLR----GVNVVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEV 187
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 188 YAIAELIR-RQRGGAAVVMGALSPRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDH 244
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + RDLT EV QIAGRAGR+ G+ G+V D E + +
Sbjct: 245 VAFAQNRKFDGYQFRDLTPAEVGQIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNF 304
Query: 369 EPSPMLE 375
+P +L+
Sbjct: 305 DPVKVLQ 311
>gi|62290640|ref|YP_222433.1| ATP-dependent helicase [Brucella abortus bv. 1 str. 9-941]
gi|82700554|ref|YP_415128.1| hypothetical protein BAB1_1781 [Brucella melitensis biovar Abortus
2308]
gi|189024852|ref|YP_001935620.1| ATP-dependent helicase [Brucella abortus S19]
gi|237816140|ref|ZP_04595135.1| helicase domain protein [Brucella abortus str. 2308 A]
gi|260547123|ref|ZP_05822861.1| ATP-dependent helicase [Brucella abortus NCTC 8038]
gi|260758686|ref|ZP_05871034.1| helicase domain-containing protein [Brucella abortus bv. 4 str.
292]
gi|260762521|ref|ZP_05874858.1| helicase domain-containing protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260884482|ref|ZP_05896096.1| helicase domain-containing protein [Brucella abortus bv. 9 str.
C68]
gi|297249034|ref|ZP_06932742.1| hypothetical protein BAYG_03076 [Brucella abortus bv. 5 str. B3196]
gi|376272507|ref|YP_005151085.1| Superfamily II DNA and RNA helicase [Brucella abortus A13334]
gi|423169363|ref|ZP_17156064.1| hypothetical protein M17_03051 [Brucella abortus bv. 1 str. NI435a]
gi|423172487|ref|ZP_17159160.1| hypothetical protein M19_03018 [Brucella abortus bv. 1 str. NI474]
gi|423175623|ref|ZP_17162291.1| hypothetical protein M1A_03018 [Brucella abortus bv. 1 str. NI486]
gi|423178818|ref|ZP_17165461.1| hypothetical protein M1E_03057 [Brucella abortus bv. 1 str. NI488]
gi|423181950|ref|ZP_17168589.1| hypothetical protein M1G_03048 [Brucella abortus bv. 1 str. NI010]
gi|423185048|ref|ZP_17171683.1| hypothetical protein M1I_03015 [Brucella abortus bv. 1 str. NI016]
gi|423188202|ref|ZP_17174814.1| hypothetical protein M1K_03018 [Brucella abortus bv. 1 str. NI021]
gi|423191342|ref|ZP_17177949.1| hypothetical protein M1M_03021 [Brucella abortus bv. 1 str. NI259]
gi|62196772|gb|AAX75072.1| ATP-dependent helicase [Brucella abortus bv. 1 str. 9-941]
gi|82616655|emb|CAJ11737.1| DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site
motif A (P-loop):Aldehyde dehydrogenase [Brucella
melitensis biovar Abortus 2308]
gi|189020424|gb|ACD73146.1| ATP-dependent helicase [Brucella abortus S19]
gi|237788602|gb|EEP62815.1| helicase domain protein [Brucella abortus str. 2308 A]
gi|260095488|gb|EEW79366.1| ATP-dependent helicase [Brucella abortus NCTC 8038]
gi|260669004|gb|EEX55944.1| helicase domain-containing protein [Brucella abortus bv. 4 str.
292]
gi|260672947|gb|EEX59768.1| helicase domain-containing protein [Brucella abortus bv. 2 str.
86/8/59]
gi|260874010|gb|EEX81079.1| helicase domain-containing protein [Brucella abortus bv. 9 str.
C68]
gi|297174167|gb|EFH33524.1| hypothetical protein BAYG_03076 [Brucella abortus bv. 5 str. B3196]
gi|363400113|gb|AEW17083.1| Superfamily II DNA and RNA helicase [Brucella abortus A13334]
gi|374535057|gb|EHR06584.1| hypothetical protein M1A_03018 [Brucella abortus bv. 1 str. NI486]
gi|374535250|gb|EHR06776.1| hypothetical protein M19_03018 [Brucella abortus bv. 1 str. NI474]
gi|374535549|gb|EHR07071.1| hypothetical protein M17_03051 [Brucella abortus bv. 1 str. NI435a]
gi|374544581|gb|EHR16051.1| hypothetical protein M1E_03057 [Brucella abortus bv. 1 str. NI488]
gi|374544872|gb|EHR16337.1| hypothetical protein M1G_03048 [Brucella abortus bv. 1 str. NI010]
gi|374545025|gb|EHR16489.1| hypothetical protein M1I_03015 [Brucella abortus bv. 1 str. NI016]
gi|374552853|gb|EHR24275.1| hypothetical protein M1K_03018 [Brucella abortus bv. 1 str. NI021]
gi|374553047|gb|EHR24468.1| hypothetical protein M1M_03021 [Brucella abortus bv. 1 str. NI259]
Length = 1028
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 162/307 (52%), Gaps = 19/307 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ S SG+ PLRLLA EV A+R+ ANVS L+T
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVS--LVT 73
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ GA++ TVE +D IDE+Q+ RG FT +L + E
Sbjct: 74 GEEKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETL 133
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +++++L+ V V + RLS L + + IV FS +
Sbjct: 134 LLGAATMRGILEKLLR----GVNVVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEV 187
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 188 YAIAELIR-RQRGGAAVVMGALSPRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDH 244
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + RDLT EV QIAGRAGR+ G+ G+V D E + +
Sbjct: 245 VAFAQNRKFDGYQFRDLTPAEVGQIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNF 304
Query: 369 EPSPMLE 375
+P +L+
Sbjct: 305 DPVKVLQ 311
>gi|260755464|ref|ZP_05867812.1| helicase domain-containing protein [Brucella abortus bv. 6 str.
870]
gi|260675572|gb|EEX62393.1| helicase domain-containing protein [Brucella abortus bv. 6 str.
870]
Length = 1049
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 162/307 (52%), Gaps = 19/307 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ S SG+ PLRLLA EV A+R+ ANVS L+T
Sbjct: 37 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVS--LVT 94
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ GA++ TVE +D IDE+Q+ RG FT +L + E
Sbjct: 95 GEEKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETL 154
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +++++L+ V V + RLS L + + IV FS +
Sbjct: 155 LLGAATMRGILEKLLR----GVNVVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEV 208
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 209 YAIAELIR-RQRGGAAVVMGALSPRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDH 265
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + RDLT EV QIAGRAGR+ G+ G+V D E + +
Sbjct: 266 VAFAQNRKFDGYQFRDLTPAEVGQIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNF 325
Query: 369 EPSPMLE 375
+P +L+
Sbjct: 326 DPVKVLQ 332
>gi|261222888|ref|ZP_05937169.1| helicase domain-containing protein [Brucella ceti B1/94]
gi|265998847|ref|ZP_06111404.1| helicase domain-containing protein [Brucella ceti M490/95/1]
gi|260921472|gb|EEX88125.1| helicase domain-containing protein [Brucella ceti B1/94]
gi|262553536|gb|EEZ09305.1| helicase domain-containing protein [Brucella ceti M490/95/1]
Length = 1028
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 162/307 (52%), Gaps = 19/307 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ S SG+ PLRLLA EV A+R+ ANVS L+T
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVS--LVT 73
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ GA++ TVE +D IDE+Q+ RG FT +L + E
Sbjct: 74 GEEKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETL 133
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +++++L+ V V + RLS L + + IV FS +
Sbjct: 134 LLGAATMRGILEKLLR----GVNVVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEV 187
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 188 YAIAELIR-RQRGGAAVVMGALSPRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDH 244
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + RDLT EV QIAGRAGR+ G+ G+V D E + +
Sbjct: 245 VAFAQNRKFDGYQFRDLTPAEVGQIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNF 304
Query: 369 EPSPMLE 375
+P +L+
Sbjct: 305 DPVKVLQ 311
>gi|306844754|ref|ZP_07477339.1| ATP-dependent helicase [Brucella inopinata BO1]
gi|306274926|gb|EFM56696.1| ATP-dependent helicase [Brucella inopinata BO1]
Length = 1023
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 162/307 (52%), Gaps = 19/307 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ S SG+ PLRLLA EV A+R+ ANVS L+T
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVS--LVT 73
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ GA++ TVE +D IDE+Q+ RG FT +L + E
Sbjct: 74 GEEKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETL 133
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +++++L+ V V + RLS L + + IV FS +
Sbjct: 134 LLGAATMRGILEKLLR----GVNVVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEV 187
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 188 YAIAELIR-RQRGGAAVVMGALSPRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDH 244
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + RDLT EV QIAGRAGR+ G+ G+V D E + +
Sbjct: 245 VAFAQNRKFDGYQFRDLTPAEVGQIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNF 304
Query: 369 EPSPMLE 375
+P +L+
Sbjct: 305 DPVKVLQ 311
>gi|294851013|ref|ZP_06791689.1| ATP-dependent helicase [Brucella sp. NVSL 07-0026]
gi|294821656|gb|EFG38652.1| ATP-dependent helicase [Brucella sp. NVSL 07-0026]
Length = 1028
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 162/307 (52%), Gaps = 19/307 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ S SG+ PLRLLA EV A+R+ ANVS L+T
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVS--LVT 73
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ GA++ TVE +D IDE+Q+ RG FT +L + E
Sbjct: 74 GEEKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETL 133
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +++++L+ V V + RLS L + + IV FS +
Sbjct: 134 LLGAATMRGILEKLLR----GVNVVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEV 187
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 188 YAIAELIR-RQRGGAAVVMGALSPRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDH 244
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + RDLT EV QIAGRAGR+ G+ G+V D E + +
Sbjct: 245 VAFAQNRKFDGYQFRDLTPAEVGQIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNF 304
Query: 369 EPSPMLE 375
+P +L+
Sbjct: 305 DPVKVLQ 311
>gi|260568846|ref|ZP_05839314.1| ATP-dependent helicase [Brucella suis bv. 4 str. 40]
gi|376275632|ref|YP_005116071.1| ATP-dependent helicase [Brucella canis HSK A52141]
gi|260154230|gb|EEW89312.1| ATP-dependent helicase [Brucella suis bv. 4 str. 40]
gi|363404199|gb|AEW14494.1| ATP-dependent helicase [Brucella canis HSK A52141]
Length = 1028
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 162/307 (52%), Gaps = 19/307 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ S SG+ PLRLLA EV A+R+ ANVS L+T
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVS--LVT 73
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ GA++ TVE +D IDE+Q+ RG FT +L + E
Sbjct: 74 GEEKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETL 133
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +++++L+ V V + RLS L + + IV FS +
Sbjct: 134 LLGAATMRGILEKLLR----GVNVVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEV 187
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 188 YAIAELIR-RQRGGAAVVMGALSPRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDH 244
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + RDLT EV QIAGRAGR+ G+ G+V D E + +
Sbjct: 245 VAFAQNRKFDGYQFRDLTPAEVGQIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNF 304
Query: 369 EPSPMLE 375
+P +L+
Sbjct: 305 DPVKVLQ 311
>gi|225628330|ref|ZP_03786364.1| helicase domain protein [Brucella ceti str. Cudo]
gi|261315870|ref|ZP_05955067.1| helicase domain-containing protein [Brucella pinnipedialis
M163/99/10]
gi|261757418|ref|ZP_06001127.1| ATP-dependent helicase [Brucella sp. F5/99]
gi|225616176|gb|EEH13224.1| helicase domain protein [Brucella ceti str. Cudo]
gi|261304896|gb|EEY08393.1| helicase domain-containing protein [Brucella pinnipedialis
M163/99/10]
gi|261737402|gb|EEY25398.1| ATP-dependent helicase [Brucella sp. F5/99]
Length = 1028
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 162/307 (52%), Gaps = 19/307 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ S SG+ PLRLLA EV A+R+ ANVS L+T
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVS--LVT 73
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ GA++ TVE +D IDE+Q+ RG FT +L + E
Sbjct: 74 GEEKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETL 133
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +++++L+ V V + RLS L + + IV FS +
Sbjct: 134 LLGAATMRGILEKLLR----GVNVVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEV 187
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 188 YAIAELIR-RQRGGAAVVMGALSPRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDH 244
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + RDLT EV QIAGRAGR+ G+ G+V D E + +
Sbjct: 245 VAFAQNRKFDGYQFRDLTPAEVGQIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNF 304
Query: 369 EPSPMLE 375
+P +L+
Sbjct: 305 DPVKVLQ 311
>gi|256370176|ref|YP_003107687.1| ATP-dependent helicase [Brucella microti CCM 4915]
gi|261750920|ref|ZP_05994629.1| helicase domain-containing protein [Brucella suis bv. 5 str. 513]
gi|256000339|gb|ACU48738.1| ATP-dependent helicase [Brucella microti CCM 4915]
gi|261740673|gb|EEY28599.1| helicase domain-containing protein [Brucella suis bv. 5 str. 513]
Length = 1028
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 162/307 (52%), Gaps = 19/307 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ S SG+ PLRLLA EV A+R+ ANVS L+T
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVS--LVT 73
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ GA++ TVE +D IDE+Q+ RG FT +L + E
Sbjct: 74 GEEKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETL 133
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +++++L+ V V + RLS L + + IV FS +
Sbjct: 134 LLGAATMRGILEKLLR----GVNVVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEV 187
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 188 YAIAELIR-RQRGGAAVVMGALSPRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDH 244
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + RDLT EV QIAGRAGR+ G+ G+V D E + +
Sbjct: 245 VAFAQNRKFDGYQFRDLTPAEVGQIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNF 304
Query: 369 EPSPMLE 375
+P +L+
Sbjct: 305 DPVKVLQ 311
>gi|163845347|ref|YP_001623002.1| hypothetical protein BSUIS_B1246 [Brucella suis ATCC 23445]
gi|163676070|gb|ABY40180.1| Hypothetical protein, conserved [Brucella suis ATCC 23445]
Length = 1028
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 162/307 (52%), Gaps = 19/307 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ S SG+ PLRLLA EV A+R+ ANVS L+T
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVS--LVT 73
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ GA++ TVE +D IDE+Q+ RG FT +L + E
Sbjct: 74 GEEKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETL 133
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +++++L+ V V + RLS L + + IV FS +
Sbjct: 134 LLGAATMRGILEKLLR----GVNVVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEV 187
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 188 YAIAELIR-RQRGGAAVVMGALSPRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDH 244
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + RDLT EV QIAGRAGR+ G+ G+V D E + +
Sbjct: 245 VAFAQNRKFDGYQFRDLTPAEVGQIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNF 304
Query: 369 EPSPMLE 375
+P +L+
Sbjct: 305 DPVKVLQ 311
>gi|261316269|ref|ZP_05955466.1| helicase domain-containing protein [Brucella pinnipedialis B2/94]
gi|265987333|ref|ZP_06099890.1| helicase domain-containing protein [Brucella pinnipedialis
M292/94/1]
gi|340791366|ref|YP_004756831.1| ATP-dependent helicase [Brucella pinnipedialis B2/94]
gi|261295492|gb|EEX98988.1| helicase domain-containing protein [Brucella pinnipedialis B2/94]
gi|264659530|gb|EEZ29791.1| helicase domain-containing protein [Brucella pinnipedialis
M292/94/1]
gi|340559825|gb|AEK55063.1| ATP-dependent helicase [Brucella pinnipedialis B2/94]
Length = 1028
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 162/307 (52%), Gaps = 19/307 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ S SG+ PLRLLA EV A+R+ ANVS L+T
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVS--LVT 73
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ GA++ TVE +D IDE+Q+ RG FT +L + E
Sbjct: 74 GEEKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETL 133
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +++++L+ V V + RLS L + + IV FS +
Sbjct: 134 LLGAATMRGILEKLLR----GVNVVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEV 187
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 188 YAIAELIR-RQRGGAAVVMGALSPRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDH 244
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + RDLT EV QIAGRAGR+ G+ G+V D E + +
Sbjct: 245 VAFAQNRKFDGYQFRDLTPAEVGQIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNF 304
Query: 369 EPSPMLE 375
+P +L+
Sbjct: 305 DPVKVLQ 311
>gi|306841484|ref|ZP_07474184.1| ATP-dependent helicase [Brucella sp. BO2]
gi|306288448|gb|EFM59804.1| ATP-dependent helicase [Brucella sp. BO2]
Length = 1028
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 162/307 (52%), Gaps = 19/307 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ S SG+ PLRLLA EV A+R+ ANVS L+T
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVS--LVT 73
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ GA++ TVE +D IDE+Q+ RG FT +L + E
Sbjct: 74 GEEKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETL 133
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +++++L+ V V + RLS L + + IV FS +
Sbjct: 134 LLGAATMRGILEKLLR----GVNVVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEV 187
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 188 YAIAELIR-RQRGGAAVVMGALSPRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDH 244
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + RDLT EV QIAGRAGR+ G+ G+V D E + +
Sbjct: 245 VAFAQNRKFDGYQFRDLTPAEVGQIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNF 304
Query: 369 EPSPMLE 375
+P +L+
Sbjct: 305 DPVKVLQ 311
>gi|153008465|ref|YP_001369680.1| helicase domain-containing protein [Ochrobactrum anthropi ATCC
49188]
gi|151560353|gb|ABS13851.1| helicase domain protein [Ochrobactrum anthropi ATCC 49188]
Length = 1027
Score = 153 bits (386), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 110/307 (35%), Positives = 162/307 (52%), Gaps = 19/307 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ S SG+ PLRLLA EV +R+ ANV+ L+T
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVVERVGAANVA--LVT 73
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ GA++ TVE +D IDE+Q+ G RG FT +L + E
Sbjct: 74 GEEKIVPPGARYSVCTVEAMPRRTDVAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETL 133
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +++++L+ + V + RLS L + + IV FS +
Sbjct: 134 LLGAGTMRGILEKLLR----GINVVTRPRLSHLAYAGAK--KITRLPNRSAIVAFSADEV 187
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 188 YAIAELIR-RQRGGAAVVMGALSPRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDH 244
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + RDLT EV QIAGRAGR+ G+ G+V D E + +
Sbjct: 245 VAFAQNRKFDGYQFRDLTPAEVGQIAGRAGRHLRDGTFGVTGQVHPFDEELVERVEAHNF 304
Query: 369 EPSPMLE 375
+P +L+
Sbjct: 305 DPVKVLQ 311
>gi|265995639|ref|ZP_06108196.1| helicase domain-containing protein [Brucella melitensis bv. 3 str.
Ether]
gi|262766923|gb|EEZ12541.1| helicase domain-containing protein [Brucella melitensis bv. 3 str.
Ether]
Length = 1028
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 162/307 (52%), Gaps = 19/307 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ S SG+ PLRLLA EV A+R+ ANVS L+T
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVS--LVT 73
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ GA++ TVE +D IDE+Q+ RG FT +L + E
Sbjct: 74 GEEKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETL 133
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +++++L+ V V + RLS L + + IV FS +
Sbjct: 134 LLGAATMRGILEKLLR----GVNVVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEV 187
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 188 YAIAELIR-RQRGGAAVVMGALSPRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDH 244
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + RDLT EV QIAGRAGR+ G+ G+V D E + +
Sbjct: 245 VAFAQNRKFDGYQFRDLTPAEVGQIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNF 304
Query: 369 EPSPMLE 375
+P +L+
Sbjct: 305 DPVKVLQ 311
>gi|265984782|ref|ZP_06097517.1| helicase domain-containing protein [Brucella sp. 83/13]
gi|306839458|ref|ZP_07472266.1| ATP-dependent helicase [Brucella sp. NF 2653]
gi|264663374|gb|EEZ33635.1| helicase domain-containing protein [Brucella sp. 83/13]
gi|306405403|gb|EFM61674.1| ATP-dependent helicase [Brucella sp. NF 2653]
Length = 1028
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 162/307 (52%), Gaps = 19/307 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ S SG+ PLRLLA EV A+R+ ANVS L+T
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVS--LVT 73
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ GA++ TVE +D IDE+Q+ RG FT +L + E
Sbjct: 74 GEEKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETL 133
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +++++L+ V V + RLS L + + IV FS +
Sbjct: 134 LFGAATMRGILEKLLR----GVNVVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEV 187
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 188 YAIAELIR-RQRGGAAVVMGALSPRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDH 244
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + RDLT EV QIAGRAGR+ G+ G+V D E + +
Sbjct: 245 VAFAQNRKFDGYQFRDLTPAEVGQIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNF 304
Query: 369 EPSPMLE 375
+P +L+
Sbjct: 305 DPVKVLQ 311
>gi|239832852|ref|ZP_04681181.1| helicase domain protein [Ochrobactrum intermedium LMG 3301]
gi|239825119|gb|EEQ96687.1| helicase domain protein [Ochrobactrum intermedium LMG 3301]
Length = 1040
Score = 152 bits (385), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 136/422 (32%), Positives = 202/422 (47%), Gaps = 50/422 (11%)
Query: 45 IRSYCSGS---GMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESS 101
++ C+G+ GM + DL PL R V +GPTN+GKTH A+ R+ S
Sbjct: 1 MKGACTGNPIIGMNQLPAHDL-------PLTLSG-RDVTAVLGPTNTGKTHLAIERMLSH 52
Query: 102 SSGIYCGPLRLLAWEV----AKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSD 157
SG+ PLRLLA EV +R+ ANV+ L+TG+E+ GA++ TVE +D
Sbjct: 53 GSGMIGLPLRLLAREVYNRVVERVGAANVA--LVTGEEKIVPPGARYSVCTVEAMPRRTD 110
Query: 158 YDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQ 216
IDE+Q+ G RG FT +L + E L G +++++L+ + V
Sbjct: 111 AAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETLLLGAGTMRGILEKLLR----GINVV 166
Query: 217 SYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 276
+ RLS L + + IV FS +Y + + I R + ++V G+L P
Sbjct: 167 TRPRLSHLAYAGSK--KITRLPNRSAIVAFSADEVYAIAELIR-RQRGGAAVVMGALSPR 223
Query: 277 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 336
TR Q + S + D LVA+DAIGMGLNL++ + F+ +KFDG + RDLT EV QI
Sbjct: 224 TRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVAFAQNRKFDGYQFRDLTPAEVGQI 281
Query: 337 AGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGL---FPNFD-LIYMY 389
AGRAGR+ G+ G+V D E + + +P +L+ F + D L Y
Sbjct: 282 AGRAGRHLRDGTFGVTGQVHPFDEELVERVEAHNFDPVKVLQWRTARFDFSSLDSLRYSL 341
Query: 390 SRLHPDSSLYGIL----EHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCI 445
P L L + LEN + EE++++AT P R+ + C
Sbjct: 342 ETPAPVEGLAKALPAVDQQALEN--------LSKDEEIVRLATT----PARIELLWDACA 389
Query: 446 SP 447
P
Sbjct: 390 LP 391
>gi|444309813|ref|ZP_21145444.1| helicase domain-containing protein [Ochrobactrum intermedium M86]
gi|443486895|gb|ELT49666.1| helicase domain-containing protein [Ochrobactrum intermedium M86]
Length = 1028
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 128/387 (33%), Positives = 189/387 (48%), Gaps = 39/387 (10%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ S SG+ PLRLLA EV +R+ ANV+ L+T
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVVERVGAANVA--LVT 73
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ GA++ TVE +D IDE+Q+ G RG FT +L + E
Sbjct: 74 GEEKIVPPGARYSVCTVEAMPRRTDAAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETL 133
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +++++L+ + V + RLS L + + IV FS +
Sbjct: 134 LLGAGTMRGILEKLLR----GINVVTRPRLSHLAYAGSK--KITRLPNRSAIVAFSADEV 187
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 188 YAIAELIR-RQRGGAAVVMGALSPRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDH 244
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + RDLT EV QIAGRAGR+ G+ G+V D E + +
Sbjct: 245 VAFAQNRKFDGYQFRDLTPAEVGQIAGRAGRHLRDGTFGVTGQVHPFDEELVERVEAHNF 304
Query: 369 EPSPMLESAGL---FPNFD-LIYMYSRLHPDSSLYGIL----EHFLENAKLSENYFFANC 420
+P +L+ F + D L Y P L L + LEN +
Sbjct: 305 DPVKVLQWRTARFDFSSLDSLRYSLETPAPVEGLAKALPAVDQQALEN--------LSKD 356
Query: 421 EEVLKVATVIDQLPLRLHEKYLFCISP 447
EE++++AT P R+ + C P
Sbjct: 357 EEIVRLATT----PARIELLWDACALP 379
>gi|261214735|ref|ZP_05929016.1| helicase domain-containing protein [Brucella abortus bv. 3 str.
Tulya]
gi|260916342|gb|EEX83203.1| helicase domain-containing protein [Brucella abortus bv. 3 str.
Tulya]
Length = 1028
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 112/307 (36%), Positives = 162/307 (52%), Gaps = 19/307 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ S SG+ PLRLLA EV A+R+ ANVS L+T
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVS--LVT 73
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ GA++ TVE +D IDE+Q+ RG FT +L + E
Sbjct: 74 GEEKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETL 133
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +++++L+ V V + RLS L + + IV FS +
Sbjct: 134 LLGAATMRGILEKLLR----GVNVVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEV 187
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 188 YAIAELIR-RQRGGAAVVMGALSPRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDH 244
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + RDLT EV QIAGRAGR+ G+ G+V D E + +
Sbjct: 245 VAFAQNRKFDGYQFRDLTPAEVGQIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEVHNF 304
Query: 369 EPSPMLE 375
+P +L+
Sbjct: 305 DPVKVLQ 311
>gi|404320554|ref|ZP_10968487.1| helicase domain-containing protein [Ochrobactrum anthropi CTS-325]
Length = 1029
Score = 152 bits (384), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 110/307 (35%), Positives = 162/307 (52%), Gaps = 19/307 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ S SG+ PLRLLA EV +R+ ANV+ L+T
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMLSHGSGMIGLPLRLLAREVYNRVVERVGAANVA--LVT 73
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ GA++ TVE +D IDE+Q+ G RG FT +L + E
Sbjct: 74 GEEKIVPPGARYSVCTVEAMPRRTDVAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETL 133
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +++++L+ + V + RLS L + + IV FS +
Sbjct: 134 LLGAGTMRGILEKLLR----GINVVTRPRLSHLAYAGSK--KITRLPNRSAIVAFSADEV 187
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 188 YAIAELIR-RQRGGAAVVMGALSPRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDH 244
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + RDLT EV QIAGRAGR+ G+ G+V D E + +
Sbjct: 245 VAFAQNRKFDGYQFRDLTPAEVGQIAGRAGRHLRDGTFGVTGQVHPFDEELVERVEAHNF 304
Query: 369 EPSPMLE 375
+P +L+
Sbjct: 305 DPVKVLQ 311
>gi|384411707|ref|YP_005621072.1| helicase domain-containing protein [Zymomonas mobilis subsp.
mobilis ATCC 10988]
gi|335932081|gb|AEH62621.1| helicase domain protein [Zymomonas mobilis subsp. mobilis ATCC
10988]
Length = 943
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 103/269 (38%), Positives = 153/269 (56%), Gaps = 14/269 (5%)
Query: 79 VILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQER 136
VI +GPTN+GKTH A+ R+ S +SG+ PLRLLA EV R+ K LITG+E+
Sbjct: 10 VIAVLGPTNTGKTHLAVQRMCSYTSGVIGFPLRLLAREVYDRVVEIKGADRVALITGEEK 69
Query: 137 EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGC-KTRGFSFTRALLGICA-NELHLCG 194
+ A++ T E + D+ A +DE+Q LGC + RG FT LL + E G
Sbjct: 70 ILPEKAQYFLCTAESMPMNRDFAFAALDEVQ-LGCDRERGHVFTDRLLNLRGREETMFLG 128
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
A PL+++++ +++ S R S L + P S + IV FS +Y
Sbjct: 129 SDALRPLLRRLIP----GIEIVSRPRFSTL-SYSGPT-KLSRLPPRSAIVAFSAEEVYAT 182
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ + R + ++V G+L P TR Q F + E + LVA+DAIGMGLN++++ + F
Sbjct: 183 AEMLR-RLRGGAAVVMGALSPRTRNAQVEMFQ--AGEVNYLVATDAIGMGLNMDVTHVAF 239
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY 343
+++ KFDG ++R LT+PE+ QIAGRAGRY
Sbjct: 240 ASLSKFDGRQVRRLTIPEMAQIAGRAGRY 268
>gi|149185283|ref|ZP_01863600.1| ATP-dependent helicase [Erythrobacter sp. SD-21]
gi|148831394|gb|EDL49828.1| ATP-dependent helicase [Erythrobacter sp. SD-21]
Length = 837
Score = 151 bits (382), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 102/270 (37%), Positives = 145/270 (53%), Gaps = 13/270 (4%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQE 135
K+ +GPTN+GKTH A+ RL + SSG PLRLLA EV R+ K LITG++
Sbjct: 5 KITAVLGPTNTGKTHLAIERLCAHSSGAMGFPLRLLAREVYDRVVAIKGEKEVALITGEQ 64
Query: 136 REEVDGAKHRAVTVE-MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLC 193
R E GA++ TVE M ++ +DE Q+ + RG FT LL E L
Sbjct: 65 RIEPPGARYLCCTVEAMPRSANERAFVALDEAQLSADRERGHVFTDRLLNARGREETMLL 124
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G P+++ +L ++ R S L ++ S + IV FS +Y
Sbjct: 125 GAATLAPMVRSLLP----QAEITERARFSTLT--HIGPRKLSRLPPRSAIVAFSAEQVYA 178
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + + R + ++V G+L PETR RQ F + E D +VA+DAIGMGLNL++S +
Sbjct: 179 VAEMLR-RFRGGAAVVMGALSPETRNRQVELFQN--GEVDYIVATDAIGMGLNLDVSHVA 235
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
F+ + KFDGV +R L E+ QIAGRAGR+
Sbjct: 236 FAGLTKFDGVRMRRLFPAEMAQIAGRAGRH 265
>gi|261325802|ref|ZP_05964999.1| helicase domain-containing protein [Brucella neotomae 5K33]
gi|261301782|gb|EEY05279.1| helicase domain-containing protein [Brucella neotomae 5K33]
Length = 1006
Score = 151 bits (382), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 111/307 (36%), Positives = 161/307 (52%), Gaps = 19/307 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH + R+ S SG+ PLRLLA EV A+R+ ANVS L+T
Sbjct: 16 RDVTAVLGPTNTGKTHLTIERMLSHGSGMIGLPLRLLAREVYNRVAERVGAANVS--LVT 73
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ GA++ TVE +D IDE+Q+ RG FT +L + E
Sbjct: 74 GEEKIVPPGARYSVCTVEAMPRHTDAAFVAIDEVQLANDLERGHIFTDRILHLRGRQETL 133
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +++++L+ V V + RLS L + + IV FS +
Sbjct: 134 LLGAATMRGILEKLLR----GVNVVTRPRLSHLAYAGSK--KMTRLPNRSAIVAFSADEV 187
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 188 YAIAELIR-RQRGGAAVVMGALSPRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDH 244
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + RDLT EV QIAGRAGR+ G+ G+V D E + +
Sbjct: 245 VAFAQNRKFDGYQFRDLTPAEVGQIAGRAGRHVRDGTFGVTGQVHPFDEELVERVEAHNF 304
Query: 369 EPSPMLE 375
+P +L+
Sbjct: 305 DPVKVLQ 311
>gi|319781061|ref|YP_004140537.1| DEAD/DEAH box helicase [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317166949|gb|ADV10487.1| helicase domain protein [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 1121
Score = 151 bits (381), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 111/304 (36%), Positives = 158/304 (51%), Gaps = 13/304 (4%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL-NKANV-SCDLITGQ 134
R V +GPTN+GKTH A+ R+ + SGI PLRLLA EV R+ K LITG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMVAHESGIIGLPLRLLAREVYARVCEKVGAHKVALITGE 75
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCG 194
E+ + GAK+ TVE +D IDE+Q+ G RG FT +L + + L
Sbjct: 76 EKIQPPGAKYSVCTVEAMPRETDAAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETLLL 135
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
A +Q ILQ V V + RLS L + + IV FS +Y +
Sbjct: 136 GAAT---MQSILQRLLRGVSVVTRPRLSHLAYAGSK--KLTRLPRRTAIVAFSADEVYAI 190
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ I R + ++V G+L P TR Q F S + D L+A+DAIGMGLNL++ + F
Sbjct: 191 AELIR-RQQGGAAVVLGALSPRTRNAQVALFQ--SGDVDYLIATDAIGMGLNLDLDHVAF 247
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPS 371
+ +KFDG + R+LT E+ QIAGRAGR+ G+ G+V LD + + + +P
Sbjct: 248 AQNRKFDGFQYRNLTAAELGQIAGRAGRHLRDGTFGVTGQVDPLDEDLIKKIEGHDFDPV 307
Query: 372 PMLE 375
+L+
Sbjct: 308 KVLQ 311
>gi|56551115|ref|YP_161954.1| helicase [Zymomonas mobilis subsp. mobilis ZM4]
gi|56542689|gb|AAV88843.1| helicase domain protein [Zymomonas mobilis subsp. mobilis ZM4]
Length = 943
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/269 (37%), Positives = 153/269 (56%), Gaps = 14/269 (5%)
Query: 79 VILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQER 136
VI +GPTN+GKTH A+ R+ S +SG+ PLRLLA EV R+ K LITG+E+
Sbjct: 10 VIAVLGPTNTGKTHLAVQRMCSYTSGVIGFPLRLLAREVYDRVVEIKGADRVALITGEEK 69
Query: 137 EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGC-KTRGFSFTRALLGICA-NELHLCG 194
+ A++ T E + D+ A +DE+Q LGC + RG FT LL + E G
Sbjct: 70 ILPEKAQYFLCTAESMPMNRDFAFAALDEVQ-LGCDRERGHVFTDRLLNLRGREETMFLG 128
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
A PL+++++ +++ S R S L + P S + +V FS +Y
Sbjct: 129 SDALRPLLRRLIP----GIEIVSRPRFSTL-SYSGPT-KLSRLPPRSAVVAFSAEEVYAT 182
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ + R + ++V G+L P TR Q F + E + LVA+DAIGMGLN++++ + F
Sbjct: 183 AEMLR-RLRGGAAVVMGALSPRTRNAQVEMFQ--AGEVNYLVATDAIGMGLNMDVTHVAF 239
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY 343
+++ KFDG ++R LT+PE+ QIAGRAGRY
Sbjct: 240 ASLSKFDGRQVRRLTIPEMAQIAGRAGRY 268
>gi|260753232|ref|YP_003226125.1| helicase [Zymomonas mobilis subsp. mobilis NCIMB 11163]
gi|258552595|gb|ACV75541.1| helicase domain protein [Zymomonas mobilis subsp. mobilis NCIMB
11163]
Length = 943
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/269 (37%), Positives = 153/269 (56%), Gaps = 14/269 (5%)
Query: 79 VILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQER 136
VI +GPTN+GKTH A+ R+ S +SG+ PLRLLA EV R+ K LITG+E+
Sbjct: 10 VIAVLGPTNTGKTHLAVQRMCSYTSGVIGFPLRLLAREVYDRVVEIKGADRVALITGEEK 69
Query: 137 EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGC-KTRGFSFTRALLGICA-NELHLCG 194
+ A++ T E + D+ A +DE+Q LGC + RG FT LL + E G
Sbjct: 70 ILPEKAQYFLCTAESMPMNRDFAFAALDEVQ-LGCDRERGHVFTDRLLNLRGREETMFLG 128
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
A PL+++++ +++ S R S L + P S + +V FS +Y
Sbjct: 129 SDALRPLLRRLIP----GIEIVSRPRFSTL-SYSGPT-KLSRLPPRSAVVAFSAEEVYAT 182
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ + R + ++V G+L P TR Q F + E + LVA+DAIGMGLN++++ + F
Sbjct: 183 AEMLR-RLRGGAAVVMGALSPRTRNAQVEMFQ--AGEVNYLVATDAIGMGLNMDVTHVAF 239
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY 343
+++ KFDG ++R LT+PE+ QIAGRAGRY
Sbjct: 240 ASLSKFDGRQVRRLTIPEMAQIAGRAGRY 268
>gi|162147813|ref|YP_001602274.1| helicase [Gluconacetobacter diazotrophicus PAl 5]
gi|209542436|ref|YP_002274665.1| helicase domain-containing protein [Gluconacetobacter
diazotrophicus PAl 5]
gi|161786390|emb|CAP55972.1| putative helicase [Gluconacetobacter diazotrophicus PAl 5]
gi|209530113|gb|ACI50050.1| helicase domain protein [Gluconacetobacter diazotrophicus PAl 5]
Length = 890
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 106/279 (37%), Positives = 152/279 (54%), Gaps = 21/279 (7%)
Query: 70 PLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVS 127
P+ ++VR ++ GPTN+GKTH A+ RL + SSGI PLRLLA E +R+ K S
Sbjct: 20 PMTAQRVRAIL---GPTNTGKTHLAIERLLAHSSGIIGFPLRLLARENYERMVAAKGAAS 76
Query: 128 CDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALL---G 184
LITG+E+ A+ + TVE + + +DEIQ+ RG FT LL G
Sbjct: 77 VALITGEEKIVPPNARWFSCTVEAMPLDQMAEFVAVDEIQLCADPDRGHVFTDRLLHARG 136
Query: 185 ICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS-FSNIQTGDCI 243
+ E G PL+++++ V+++S RLS L L GS + + I
Sbjct: 137 LV--ETMFLGAETIRPLLRRLVP----GVEIESRPRLSQLTHLG---GSKLTRLPPRSAI 187
Query: 244 VTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM 303
V FS +Y + + I R + C++V G L P TR Q + D E D LVA+DAIGM
Sbjct: 188 VAFSATEVYAIAELIRRR-RGGCAVVMGQLSPRTRNAQVALYQD--REVDYLVATDAIGM 244
Query: 304 GLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGR 342
GLN++++ + F+ + KFDG R L+ E+ QIAGRAGR
Sbjct: 245 GLNMDVNHVAFAGLSKFDGARARPLSPAEIAQIAGRAGR 283
>gi|397676869|ref|YP_006518407.1| helicase domain-containing protein [Zymomonas mobilis subsp.
mobilis ATCC 29191]
gi|395397558|gb|AFN56885.1| helicase domain-containing protein [Zymomonas mobilis subsp.
mobilis ATCC 29191]
Length = 943
Score = 150 bits (380), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 102/269 (37%), Positives = 153/269 (56%), Gaps = 14/269 (5%)
Query: 79 VILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQER 136
VI +GPTN+GKTH A+ R+ S +SG+ PLRLLA EV R+ K LITG+E+
Sbjct: 10 VIAVLGPTNTGKTHLAVQRMCSYTSGVIGFPLRLLAREVYDRVVEIKGADRVALITGEEK 69
Query: 137 EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGC-KTRGFSFTRALLGICA-NELHLCG 194
+ A++ T E + D+ A +DE+Q LGC + RG FT LL + E G
Sbjct: 70 ILPEKAQYFLCTAESMPMNRDFAFAALDEVQ-LGCDRERGHVFTDRLLNLRGREETMFLG 128
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
A PL+++++ +++ S R S L + P S + +V FS +Y
Sbjct: 129 SDALRPLLRRLIP----GIEIVSRPRFSTLS-YSGPT-KLSRLPPRSAVVAFSAEEVYAT 182
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ + R + ++V G+L P TR Q F + E + LVA+DAIGMGLN++++ + F
Sbjct: 183 AEMLR-RLRGGAAVVMGALSPRTRNAQVEMFQ--AGEVNYLVATDAIGMGLNMDVTHVAF 239
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY 343
+++ KFDG ++R LT+PE+ QIAGRAGRY
Sbjct: 240 ASLTKFDGRQVRRLTIPEMAQIAGRAGRY 268
>gi|409402747|ref|ZP_11252240.1| hypothetical protein MXAZACID_14658 [Acidocella sp. MX-AZ02]
gi|409128730|gb|EKM98617.1| hypothetical protein MXAZACID_14658 [Acidocella sp. MX-AZ02]
Length = 852
Score = 150 bits (379), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 104/265 (39%), Positives = 147/265 (55%), Gaps = 16/265 (6%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN--VSCDLITGQEREEVD 140
+GPTN+GKTH A+ RL S ++GI PLRLLA E R+ KA + LITG+E+
Sbjct: 15 LGPTNTGKTHLAIERLLSHATGIIGFPLRLLARENYDRMVKAKGIKAVALITGEEKIVPP 74
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALL---GICANELHLCGDPA 197
GA+ + TVE + + +DEIQ+ RG FT LL G+ E G
Sbjct: 75 GARWFSCTVEAMPLDRKVEFLAVDEIQLCADPDRGHVFTDRLLHARGLV--ETMFLGADT 132
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
PL++++ V G V++++ RLS L S + IV FS +Y + +A
Sbjct: 133 IAPLMRRL--VPG--VEIETRPRLSQLSFAGA--AKLSRLPPRSAIVAFSAAEVYAIAEA 186
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 317
+ R + C++V G L P TR Q + D E D LVA+DAIGMGLN++++ + F+ +
Sbjct: 187 VRRR-RGGCAVVMGRLSPRTRNAQVALYQD--KEVDFLVATDAIGMGLNMDVNHVAFAGI 243
Query: 318 KKFDGVELRDLTVPEVKQIAGRAGR 342
+KFDG + R LT EV QIAGRAGR
Sbjct: 244 RKFDGRQPRLLTPSEVAQIAGRAGR 268
>gi|337265871|ref|YP_004609926.1| helicase domain-containing protein [Mesorhizobium opportunistum
WSM2075]
gi|336026181|gb|AEH85832.1| helicase domain protein [Mesorhizobium opportunistum WSM2075]
Length = 1162
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 160/305 (52%), Gaps = 15/305 (4%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL-NKANV-SCDLITGQ 134
R V +GPTN+GKTH A+ R+ + +GI PLRLLA EV R+ K LITG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMVAHETGIIGLPLRLLAREVYTRVCEKVGAHKVALITGE 75
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLC 193
E+ + GAK+ TVE +D IDE+Q+ G RG FT +L + E L
Sbjct: 76 EKIQPKGAKYSVCTVEAMPRETDAAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETLLL 135
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G ++Q++L+ V V + RLS L + + IV FS +Y
Sbjct: 136 GAATMHGILQRLLK----GVSVVTRPRLSHLAYAGSK--KLTRLPRRTAIVAFSADEVYA 189
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R + ++V G+L P TR Q F S + D LVA+DAIGMGLNL++ +
Sbjct: 190 IAELIR-RQQGGAAVVLGALSPRTRNAQVALFQ--SGDVDYLVATDAIGMGLNLDLDHVA 246
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEP 370
F+ +KFDG + R+LT E+ QIAGRAGR+ G+ G+V LD E + + +P
Sbjct: 247 FAQNRKFDGYQYRNLTAAELGQIAGRAGRHLRDGTFGVTGQVDPLDEELVKKIEGHDFDP 306
Query: 371 SPMLE 375
+L+
Sbjct: 307 VKVLQ 311
>gi|162456000|ref|YP_001618367.1| ATP-dependent helicase [Sorangium cellulosum So ce56]
gi|161166582|emb|CAN97887.1| ATP-dependent helicase [Sorangium cellulosum So ce56]
Length = 778
Score = 150 bits (379), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 144/280 (51%), Gaps = 12/280 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQEREEVD 140
+GPTN+GKTH+A+ R+ S SG+ PLRLLA EV R++ L+TG+E+
Sbjct: 11 LGPTNTGKTHRAIERMLSHDSGMIGLPLRLLAREVYDRVSTQVGEARVALVTGEEKRVPR 70
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAV 199
+ TVE V + D IDEIQ+ RG FT R LL E G
Sbjct: 71 RPDYWVCTVEAMPVDLEVDFLAIDEIQLAAHDQRGHVFTERLLLSRGRRETWFLGADTMR 130
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
PL+ +++ + + RLS L G S + +V FS +Y + + +
Sbjct: 131 PLMAELVPTA----SIVQHPRLSRLASAGA--GKLSRLPPRSAVVAFSTPQVYEIAERLR 184
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
++ + ++V G+L P TR Q F S E D LVA+DAIGMGLNL++ + F+ ++K
Sbjct: 185 AQ-RGGAAVVLGALSPRTRNAQVALFQ--SGEVDYLVATDAIGMGLNLDVRHVAFAALRK 241
Query: 320 FDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359
FDG +RDL E+ QIAGRAGR+ + G V L D
Sbjct: 242 FDGRAVRDLDPAELAQIAGRAGRHLADGTFGTVAPLSLPD 281
>gi|398827720|ref|ZP_10585923.1| DNA/RNA helicase, superfamily II [Phyllobacterium sp. YR531]
gi|398219018|gb|EJN05515.1| DNA/RNA helicase, superfamily II [Phyllobacterium sp. YR531]
Length = 1006
Score = 149 bits (377), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 107/284 (37%), Positives = 152/284 (53%), Gaps = 17/284 (5%)
Query: 65 PHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKR 120
P T PLA R V +GPTN+GKTH A+ RL + SG+ PLRLLA EV A+R
Sbjct: 5 PKTELPLALTG-RDVTAVLGPTNTGKTHLAIERLLAHRSGMIGLPLRLLAREVYNRVAER 63
Query: 121 LNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTR 180
ANV+ LITG+E+ GA++ TVE +D D IDE+Q+ RG FT
Sbjct: 64 AGIANVA--LITGEEKISPPGARYSVCTVEAMPRQTDVDFVAIDEVQLANDLERGHIFTD 121
Query: 181 ALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQT 239
+L + E L G +++++L + V + RLS L + +
Sbjct: 122 RILHLRGRQETILLGAATMRGILEKLLP----GISVVTRPRLSNLTYAGSK--KITRLPP 175
Query: 240 GDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD 299
IV F+ +Y + + I R ++V G+L P TR +Q + S + D LVA+D
Sbjct: 176 RTAIVAFAAEEVYSIAELIR-RQNGGAAVVMGTLSPRTRNKQVELYQ--SGDVDYLVATD 232
Query: 300 AIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
AIGMGLNL++ + F+ +KFDG + RDL+ E+ QIAGRAGR+
Sbjct: 233 AIGMGLNLDVDHVAFAQDRKFDGYQFRDLSPTEIGQIAGRAGRH 276
>gi|453330840|dbj|GAC87167.1| ATP-dependent DNA helicase [Gluconobacter thailandicus NBRC 3255]
Length = 871
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 102/263 (38%), Positives = 141/263 (53%), Gaps = 12/263 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN--VSCDLITGQEREEVD 140
+GPTN+GKTH AL+R+ + SSGI PLRLLA E +RL KA S LITG+E+
Sbjct: 43 LGPTNTGKTHYALTRMMAHSSGIIGFPLRLLARENYERLVKAKGERSVALITGEEKIVPP 102
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAV 199
GA+ A TVE + + +DEIQ+ RG FT LL E G
Sbjct: 103 GARWFACTVEAMPLDRKAEFVAVDEIQLASDPDRGHIFTDRLLHARGTVETLFLGAETIR 162
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
PL+Q+++ +++ + RLS LV + S + IV FS +Y L + I
Sbjct: 163 PLLQKLVP----GIEIDTRTRLSSLV--STGPTKLSRLPPRSAIVAFSMAEVYALAEVIR 216
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R + C+++ G L P TR Q + + E D LVA+DAIGMGLN+++ + + + K
Sbjct: 217 RR-RGGCAVIMGQLSPRTRNAQVELYQN--REVDYLVATDAIGMGLNMDVDHVALAQLSK 273
Query: 320 FDGVELRDLTVPEVKQIAGRAGR 342
FDG R L E+ QIAGRAGR
Sbjct: 274 FDGTSPRPLFPQEIAQIAGRAGR 296
>gi|410943969|ref|ZP_11375710.1| ATP-dependent DNA helicase [Gluconobacter frateurii NBRC 101659]
Length = 871
Score = 149 bits (377), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 102/263 (38%), Positives = 141/263 (53%), Gaps = 12/263 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN--VSCDLITGQEREEVD 140
+GPTN+GKTH AL+R+ + SSGI PLRLLA E +RL KA S LITG+E+
Sbjct: 43 LGPTNTGKTHYALTRMMAHSSGIIGFPLRLLARENYERLVKAKGERSVALITGEEKIVPP 102
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAV 199
GA+ A TVE + + +DEIQ+ RG FT LL E G
Sbjct: 103 GARWFACTVEAMPLDRKTEFVAVDEIQLASDPDRGHIFTDRLLHARGTVETLFLGAETIR 162
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
PL+Q+++ +++ + RLS LV + S + IV FS +Y L + I
Sbjct: 163 PLLQKLVP----GIEIDTRTRLSSLV--STGPTKLSRLPPRSAIVAFSMAEVYALAEVIR 216
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R + C+++ G L P TR Q + + E D LVA+DAIGMGLN+++ + + + K
Sbjct: 217 RR-RGGCAVIMGQLSPRTRNAQVELYQN--REVDYLVATDAIGMGLNMDVDHVALAQLSK 273
Query: 320 FDGVELRDLTVPEVKQIAGRAGR 342
FDG R L E+ QIAGRAGR
Sbjct: 274 FDGTSPRPLFPQEIAQIAGRAGR 296
>gi|414341083|ref|YP_006982604.1| ATP-dependent DNA helicase [Gluconobacter oxydans H24]
gi|411026418|gb|AFV99672.1| ATP-dependent DNA helicase [Gluconobacter oxydans H24]
Length = 837
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 102/263 (38%), Positives = 141/263 (53%), Gaps = 12/263 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN--VSCDLITGQEREEVD 140
+GPTN+GKTH AL+R+ + SSGI PLRLLA E +RL KA S LITG+E+
Sbjct: 9 LGPTNTGKTHYALTRMMAHSSGIIGFPLRLLARENYERLVKAKGERSVALITGEEKIVPP 68
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAV 199
GA+ A TVE + + +DEIQ+ RG FT LL E G
Sbjct: 69 GARWFACTVEAMPLDRKAEFVAVDEIQLASDPDRGHIFTDRLLHARGTVETLFLGAETIR 128
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
PL+Q+++ +++ + RLS LV + S + IV FS +Y L + I
Sbjct: 129 PLLQKLVP----GIEIDTRTRLSSLV--STGPTKLSRLPPRSAIVAFSMAEVYALAEVIR 182
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R + C+++ G L P TR Q + + E D LVA+DAIGMGLN+++ + + + K
Sbjct: 183 RR-RGGCAVIMGQLSPRTRNAQVELYQN--REVDYLVATDAIGMGLNMDVDHVALAQLSK 239
Query: 320 FDGVELRDLTVPEVKQIAGRAGR 342
FDG R L E+ QIAGRAGR
Sbjct: 240 FDGTSPRPLFPQEIAQIAGRAGR 262
>gi|302384117|ref|YP_003819940.1| helicase [Brevundimonas subvibrioides ATCC 15264]
gi|302194745|gb|ADL02317.1| helicase domain protein [Brevundimonas subvibrioides ATCC 15264]
Length = 826
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 107/315 (33%), Positives = 160/315 (50%), Gaps = 15/315 (4%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQE 135
+V+ +GPTN+GKTH A+ R+ +SG+ PLRLLA E+ +R+ + + LITG+E
Sbjct: 12 RVVAVLGPTNTGKTHLAVERMLGHASGMIGLPLRLLAREIYERIVRQRGANAVALITGEE 71
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCG 194
+ TVE + + + IDEIQ+ RG FT LL E G
Sbjct: 72 KIIPSRPHFWVCTVEAMPLEREVEFLAIDEIQLAADPERGHVFTSRLLHARGRFETMFLG 131
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
PL+++++ DV++ + ERLS L + + IV FS +Y +
Sbjct: 132 AATMAPLMRRLIP----DVEIVTRERLSQLTYAGSK--KLTRLPRRSAIVAFSTEQVYAI 185
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ I R + ++V GSL P TR Q F S E D LVA+DAIGMGLN+++ + F
Sbjct: 186 AELIR-RQRGGAAVVMGSLSPRTRNAQVALFQ--SGEVDFLVATDAIGMGLNMDVDHVAF 242
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPS 371
+ M+KFDG R L E+ QIAGRAGR+ G+ GE LD + + + + +P
Sbjct: 243 AGMRKFDGRRTRWLHAHEIAQIAGRAGRHIRDGTFGVTGEAEELDEDLVEQVVEHRFDPI 302
Query: 372 PMLESAGLFPNFDLI 386
+E +FD +
Sbjct: 303 QAIEWRNARLDFDTL 317
>gi|357025986|ref|ZP_09088096.1| helicase domain-containing protein [Mesorhizobium amorphae
CCNWGS0123]
gi|355542135|gb|EHH11301.1| helicase domain-containing protein [Mesorhizobium amorphae
CCNWGS0123]
Length = 1146
Score = 149 bits (376), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 160/305 (52%), Gaps = 15/305 (4%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL-NKANV-SCDLITGQ 134
R V +GPTN+GKTH A+ R+ + SG+ PLRLLA EV R+ K LITG+
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMVAHESGVIGLPLRLLAREVYTRVCEKVGAHKVALITGE 75
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLC 193
E+ + GA++ TVE +D IDE+Q+ G RG FT +L + E L
Sbjct: 76 EKIQPVGARYSVCTVEAMPRETDAAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETLLL 135
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G ++Q++L+ V V + RLS L + + IV FS +Y
Sbjct: 136 GAATMHGILQRLLK----GVSVVTRPRLSHLAYAGSK--KLTRLPRRTAIVAFSADEVYA 189
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R + ++V G+L P TR Q F S + D LVA+DAIGMGLNL++ +
Sbjct: 190 IAELIR-RQQGGAAVVLGALSPRTRNAQVALFQ--SGDVDYLVATDAIGMGLNLDLDHVA 246
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEP 370
F+ +KFDG + RDLT E+ QIAGRAGR+ G+ G+V LD E + + +P
Sbjct: 247 FAQNRKFDGYQFRDLTSAELGQIAGRAGRHLRDGTFGVTGQVDPLDEELVKKIEGHDFDP 306
Query: 371 SPMLE 375
+L+
Sbjct: 307 VKVLQ 311
>gi|255597590|ref|XP_002536808.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
gi|223518473|gb|EEF25574.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
Length = 404
Score = 149 bits (376), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 127/228 (55%), Gaps = 6/228 (2%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN--- 125
+ +AR+ RK I +GPTNSGKTH A+ L + SG+Y PLRLLA E +RL +
Sbjct: 176 FDVARRMKRKFIAVLGPTNSGKTHMAMEALGKAPSGVYLAPLRLLALENYERLQEMQQHG 235
Query: 126 --VSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALL 183
+ L+TG+ER V GA H A TVEM D + D AVIDEIQML + RG ++T A+
Sbjct: 236 QPLKVSLVTGEERRLVPGATHVASTVEMLDTQTPVDVAVIDEIQMLSDRDRGAAWTAAVC 295
Query: 184 GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCI 243
G A ++L G P A I+ + +++V +R PL + SN++ GD +
Sbjct: 296 GAPARVVYLVGAPEARRAIEVLAARLECELEVHLLKRKGPLTMEPSAVRKLSNLRRGDAV 355
Query: 244 VTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSE 291
+ FSR + + + G + + VYG+L PE R QA RF + S++
Sbjct: 356 ICFSRREVLMWRDMVTEMGLSVAT-VYGNLSPEVRRAQAQRFREGSAD 402
>gi|393770819|ref|ZP_10359296.1| ATP-dependent helicase [Novosphingobium sp. Rr 2-17]
gi|392723717|gb|EIZ81105.1| ATP-dependent helicase [Novosphingobium sp. Rr 2-17]
Length = 851
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 117/355 (32%), Positives = 173/355 (48%), Gaps = 32/355 (9%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ + SSG+ PLRLLA EV R+ K LITG+ER E
Sbjct: 21 LGPTNTGKTHLAIERMCAHSSGMIGFPLRLLAREVYDRVVKIKGEGQVALITGEERIEPK 80
Query: 141 GAKHRAVTVEMADVVSDYDCAV-IDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAA 198
GA++ TVE V+ V +DE Q+ + RG FT R L E + G
Sbjct: 81 GARYLLCTVEAMPVMERSMAFVALDEAQLAADRERGHVFTDRLLHARGREETMILGSATL 140
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
P+++ ++ ++ + R S L + S + IV FS +Y + + +
Sbjct: 141 EPMVRALV----PGAEIVTRPRFSTLT--HAGAKKLSRVPPRSAIVAFSAEQVYAIAEML 194
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
R + ++V G+L P+TR Q + S E D LVA+DAIGMGLNL+I + F+ +
Sbjct: 195 R-RFRGGAAVVMGALSPQTRNAQVALYQ--SGEVDYLVATDAIGMGLNLDIEHVAFAGLS 251
Query: 319 KFDGVELRDLTVPEVKQIAGRAGR---------------YGSKFPVGEVTCLDSEDLPLL 363
KFDGV R LT E+ QIAGRAGR + ++F E+ ++ P L
Sbjct: 252 KFDGVRQRRLTTAEMAQIAGRAGRHQKDGSFGTLTGSGGHDAEFAAEEIYAIEEHRFPPL 311
Query: 364 HKSLL-EPSPMLES-AGLFPNFDLIYMYSRL--HPDSSLYGILEHFLENAKLSEN 414
K EP P +S + L + L L P++ +L E A ++E+
Sbjct: 312 TKLFWREPEPRFDSLSTLIADLGLPPERPELAPAPEAIDLAVLRRLSEEATVAES 366
>gi|254473008|ref|ZP_05086406.1| Helicase conserved C-terminal domain protein [Pseudovibrio sp.
JE062]
gi|211957729|gb|EEA92931.1| Helicase conserved C-terminal domain protein [Pseudovibrio sp.
JE062]
Length = 981
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 112/317 (35%), Positives = 157/317 (49%), Gaps = 17/317 (5%)
Query: 75 KVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLIT 132
+ R V +GPTN+GKTH A+ R+ + SSG+ PLRLLA EV RL K LIT
Sbjct: 11 RSRSVTAILGPTNTGKTHLAIERMSAYSSGLIGLPLRLLAREVYGRLVEKKGPDLVALIT 70
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ + TVE D D IDE+Q+ G RG FT +L + E
Sbjct: 71 GEEKIIPKTPRFWVSTVEAMPKDLDVDFVAIDEVQLAGDLERGHVFTDRILNLRGREETL 130
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G PL+++++ + V + R+S L + + IV FS +
Sbjct: 131 LLGSSTIRPLLEKLMP----GINVITRPRMSILTYAGSK--KITRLPRRSAIVAFSSDEV 184
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V GSL P TR Q F + + D L+A+DA+GMGLNL++
Sbjct: 185 YAIAELIR-RQRGGAAVVLGSLSPRTRNAQVDLFQNG--DVDWLIATDAVGMGLNLDVDH 241
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
I F+ +KFDG + R LT E QIAGRAGR+ G+ G V D E + L
Sbjct: 242 IAFAGHRKFDGYQYRQLTPAETGQIAGRAGRHLRDGTFGVTGRVPGFDEELVHQLESHEF 301
Query: 369 EPSPMLESAGLFPNFDL 385
EP +L+ PN D
Sbjct: 302 EPLKVLQWRN--PNLDF 316
>gi|297180167|gb|ADI16389.1| superfamily II DNA and RNA helicases [uncultured bacterium
HF130_12L15]
Length = 1179
Score = 149 bits (375), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 106/290 (36%), Positives = 157/290 (54%), Gaps = 19/290 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ + SSG+ PLRLLA EV A+++ ANV+ LIT
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMVAHSSGVIGLPLRLLAREVYSRVAEKVGTANVA--LIT 73
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ + GA++ TVE + IDE+Q+ G RG FT +L + +E
Sbjct: 74 GEEKIQPPGARYSVCTVEAMPRETSAAFVAIDEVQLAGDLERGHVFTDRILHLRGRDETL 133
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G ++Q++L+ V V + R+S L + + IV FS +
Sbjct: 134 LLGAATMAGILQKLLK----GVSVVTRPRMSHLAYAGSK--KITRLPRRSAIVAFSADEV 187
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 188 YGIAELIR-RQRGGAAVVLGALSPRTRNAQVEIYQ--SGDVDFLVATDAIGMGLNLDVDH 244
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ F+ +KFDG + R L+ E+ QIAGRAGR+ G+ G+V D E
Sbjct: 245 VGFAQNRKFDGFQYRQLSAAELGQIAGRAGRHMRDGTFGVTGQVDPFDDE 294
>gi|149922153|ref|ZP_01910592.1| putative helicase [Plesiocystis pacifica SIR-1]
gi|149816997|gb|EDM76481.1| putative helicase [Plesiocystis pacifica SIR-1]
Length = 814
Score = 149 bits (375), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 101/278 (36%), Positives = 154/278 (55%), Gaps = 19/278 (6%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD---LITGQEREEV 139
+GPTN+GKTH+A+ R+ SG+ PLRLLA EV ++ A + D L+TG+E+
Sbjct: 7 LGPTNTGKTHRAIERMLEHRSGMIGLPLRLLAREVYDKIT-ARIGEDRVALVTGEEKRIP 65
Query: 140 DGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAA 198
+ TVE V + D +DEIQ+ G + RG FT LL E G +
Sbjct: 66 PRPDYWVCTVESMPVSREVDFVAVDEIQLAGHRQRGHVFTDRLLHARGRLETWFMGSESV 125
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPL-NVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
P++++++ T D V ++ RLS L + N+ LG+ +V FS +Y + +
Sbjct: 126 RPILEELVP-TAD---VHTHPRLSQLRGIGNLSLGALPPRT---AVVAFSAEEVYAIAER 178
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 317
+ R + ++V G+L P TR Q + S E D +VA+DAIGMGLN+++ + F+ +
Sbjct: 179 LRQR-RGGAAVVLGALSPRTRNAQVALYQ--SGEVDYMVATDAIGMGLNMDVDTVAFAGL 235
Query: 318 KKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 355
+KFDGVE+R+L E+ QIAGRAGR + G+ CL
Sbjct: 236 RKFDGVEVRELEPGELAQIAGRAGRAHND---GQFCCL 270
>gi|167648077|ref|YP_001685740.1| helicase domain-containing protein [Caulobacter sp. K31]
gi|167350507|gb|ABZ73242.1| helicase domain protein [Caulobacter sp. K31]
Length = 851
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 102/269 (37%), Positives = 142/269 (52%), Gaps = 12/269 (4%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQE 135
K+ +GPTN+GKTH A+ R+ +SG+ PLRLLA E+ R+ K S LITG+E
Sbjct: 12 KLTAVLGPTNTGKTHLAVERMLGHASGMIGLPLRLLAREIYDRIVKLRGKASVALITGEE 71
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCG 194
+ A + TVE + + + IDEIQ+ RG FT LL E L G
Sbjct: 72 KIVPPRAAYFVCTVEAMPLTREVEFLAIDEIQLCADPERGHIFTHRLLHARGRFETMLLG 131
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
PLI+++L D ++ + ER S L + + +V FS A+Y +
Sbjct: 132 AGTMAPLIRRLLP----DAEIVTRERFSNLTYSGSK--KLTRLPRRSAVVAFSTDAVYAI 185
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ I R + ++V GSL P TR Q + S E D LVA+DAIGMGLN+++ + F
Sbjct: 186 AELIR-RQRGGAAVVMGSLSPRTRNAQVALYQ--SGEVDFLVATDAIGMGLNMDVDHVAF 242
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY 343
+ ++KFDG R L EV QIAGRAGRY
Sbjct: 243 AGLRKFDGKRTRWLYPQEVGQIAGRAGRY 271
>gi|347758499|ref|YP_004866061.1| helicase domain-containing protein [Micavibrio aeruginosavorus
ARL-13]
gi|347591017|gb|AEP10059.1| helicase conserved C-terminal domain protein [Micavibrio
aeruginosavorus ARL-13]
Length = 978
Score = 148 bits (374), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 108/318 (33%), Positives = 162/318 (50%), Gaps = 23/318 (7%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQE 135
+V+ +GPTN+GKT+ A+ R+ + SG+ PLRLLA E R+ K + L+TG+E
Sbjct: 38 RVLAVLGPTNTGKTYTAIERMLTHHSGVIGFPLRLLARENYDRIVERKGVHAVALVTGEE 97
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALL---GICANELHL 192
+ A++ TVE V +D +DEIQ+ G RGF FT LL GI E
Sbjct: 98 KIVPPHARYYVCTVESMPVDQKFDFLAVDEIQLCGDPERGFIFTDRLLRSRGIV--ETMF 155
Query: 193 CGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIY 252
G PL+Q ++ +++ +S RLS L + + +V FS +Y
Sbjct: 156 MGAETIRPLMQALIP----NIEFESRARLSQLTYRG--YKKLTRLPKRTAVVAFSVDDVY 209
Query: 253 RLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRI 312
I R + ++V G+L P TR +Q + S E D LVA+DAIGMGLN++I +
Sbjct: 210 ANADLIR-RHRGGTAVVLGALSPRTRNKQVDMYQ--SGEVDFLVATDAIGMGLNMDIHHV 266
Query: 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLE 369
+ +KFDG +R L E+ QIAGRAGR+ G+ G V LD + + + + +
Sbjct: 267 ALAATRKFDGAHIRSLDKAEIAQIAGRAGRHVRDGTFGVTGPVPGLDPDMVEAIEHHIFD 326
Query: 370 PSPMLESAGLFPNFDLIY 387
P P + + N DL +
Sbjct: 327 PLPFI----YWRNADLDF 340
>gi|407773998|ref|ZP_11121298.1| ATP-dependent helicase MgpS [Thalassospira profundimaris WP0211]
gi|407283444|gb|EKF08985.1| ATP-dependent helicase MgpS [Thalassospira profundimaris WP0211]
Length = 977
Score = 148 bits (373), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 118/369 (31%), Positives = 181/369 (49%), Gaps = 25/369 (6%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWE----VAKRLNKANVSCDLITG 133
+++ +GPTN+GKTH A+ R+ + ++G+ PLRLLA E ++ K V+ LITG
Sbjct: 10 RILAILGPTNTGKTHLAMERMLAHTTGMIGFPLRLLARENYDRAVAKVGKGAVA--LITG 67
Query: 134 QEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHL 192
+ER A++ TVE V D IDEIQM RG FT R L +E
Sbjct: 68 EERILPKTARYFLCTVEAMPVAKQVDFLAIDEIQMCADPERGHVFTDRLLHARGRHETMF 127
Query: 193 CGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIY 252
G P+I++++ D+V+ ER S L + + +VTFS +Y
Sbjct: 128 MGAETIRPVIRKLV----DNVEFDRRERFSTLTYNGAK--KIQRLPSQSAVVTFSAQEVY 181
Query: 253 RLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRI 312
+ + + R K ++V G+L P TR Q F + E + L+A+DAIGMGLNL+++ +
Sbjct: 182 AVAELVR-RQKGGAAVVLGALSPRTRNAQVEMFQNG--EVEHLIATDAIGMGLNLDLNHV 238
Query: 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLE 369
F+ M KFDG R LT E QIAGRAGR+ G+ G ++ +D + + + + E
Sbjct: 239 AFAAMTKFDGKFNRGLTAAETAQIAGRAGRHMNDGTFGVTGNLSGIDPDIIEQIEEHEFE 298
Query: 370 P--SPMLESAGL-FPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKV 426
P +A L F D + R D + ++ L A E+V ++
Sbjct: 299 PLAKVFWRNARLDFRTVDALQKSLRRRSDDPTLILAREPVDEIMLDH---LARNEDVARI 355
Query: 427 ATVIDQLPL 435
AT D++ L
Sbjct: 356 ATAPDRVQL 364
>gi|163760001|ref|ZP_02167085.1| hypothetical protein HPDFL43_17261 [Hoeflea phototrophica DFL-43]
gi|162282959|gb|EDQ33246.1| hypothetical protein HPDFL43_17261 [Hoeflea phototrophica DFL-43]
Length = 1064
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 108/305 (35%), Positives = 158/305 (51%), Gaps = 15/305 (4%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL-NKANVS-CDLITGQ 134
R V +GPTN+GKTH A+ R+ S SSG+ PLRLLA EV R+ +K V L+TG+
Sbjct: 18 RGVTAVLGPTNTGKTHYAIERMASYSSGVIGLPLRLLAREVYGRMVDKVGVQHVSLVTGE 77
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLC 193
E+ GA++ TVE +D IDE+Q+ G RG FT +L + E L
Sbjct: 78 EKISPPGARYAVCTVEAMPQRTDAAFVAIDEVQIAGDLERGHVFTDRILSLRGREETLLL 137
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G +++Q+L + V RLS L + + IV FS +Y
Sbjct: 138 GSLTVRGILEQLLP----GITVIERPRLSELHYAGSK--KITRLPRRSAIVAFSADEVYA 191
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + + R + ++V G+L P TR Q + + + D LVA+DAIGMGLNL++ +
Sbjct: 192 IAELVR-RQRGGAAVVLGALSPRTRNAQVELYQNG--DVDYLVATDAIGMGLNLDVDHVA 248
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEP 370
F+ +KFDG R LT E QIAGRAGR+ G+ G+V+ L + + L + EP
Sbjct: 249 FAQERKFDGHSYRQLTASEFGQIAGRAGRHLRDGTFGVTGQVSPLHDDLVHRLESHVFEP 308
Query: 371 SPMLE 375
+L+
Sbjct: 309 VKILQ 313
>gi|433772744|ref|YP_007303211.1| DNA/RNA helicase, superfamily II [Mesorhizobium australicum
WSM2073]
gi|433664759|gb|AGB43835.1| DNA/RNA helicase, superfamily II [Mesorhizobium australicum
WSM2073]
Length = 1118
Score = 148 bits (373), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 110/291 (37%), Positives = 157/291 (53%), Gaps = 18/291 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK---ANVSCDLITG 133
R V +GPTN+GKTH A+ R+ + +GI PLRLLA EV R+ + AN LITG
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMVAHETGIIGLPLRLLAREVYTRVCEKVGAN-KVALITG 74
Query: 134 QEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHL 192
+E+ + GA++ TVE +D IDE+Q+ G RG FT +L + E L
Sbjct: 75 EEKIQPPGARYSVCTVEAMPRETDAAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETLL 134
Query: 193 CGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIY 252
G ++Q++L+ V V + RLS L + + IV FS +Y
Sbjct: 135 LGAATMHGILQRLLK----GVSVVTRPRLSHLAYAGSK--KLTRLPRRTAIVAFSADEVY 188
Query: 253 RLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRI 312
+ + I R + ++V G+L P TR Q F S + D L+A+DAIGMGLNL++ +
Sbjct: 189 AIAELIR-RQQGGAAVVLGALSPRTRNAQVALFQ--SGDVDYLIATDAIGMGLNLDLDHV 245
Query: 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDL 360
F+ +KFDG + R+LT E+ QIAGRAGR+ G+ G+V LD EDL
Sbjct: 246 AFAQNRKFDGYQYRNLTAAELGQIAGRAGRHLRDGTFGVTGQVDPLD-EDL 295
>gi|296284814|ref|ZP_06862812.1| ATP-dependent helicase [Citromicrobium bathyomarinum JL354]
Length = 873
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 102/281 (36%), Positives = 147/281 (52%), Gaps = 13/281 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ SSG PLRLLA EV R+ K + LITG+ER E
Sbjct: 10 LGPTNTGKTHLAIERMCGHSSGAIGFPLRLLAREVYDRVVAIKGEKAVALITGEERIEPP 69
Query: 141 GAKHRAVTVE-MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAA 198
A++ T E M + +DE+Q+ + RG FT LL E L G A
Sbjct: 70 DARYFLCTAEAMPHDGGGHAFVALDEVQLAADRERGHVFTDRLLNARGREETMLLGSSTA 129
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
P+I+ ++ ++ R S L + S + +V FS +Y + + +
Sbjct: 130 APVIKSLIP----HAELIERPRFSTLT--HGGAKKLSRLPKRSAVVAFSSDQVYAIAEML 183
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
R + ++V G+L PETR RQ F + E D +VA+DAIGMGLNL+++ + F+++
Sbjct: 184 R-RHRGGAAVVMGALSPETRNRQVELFQN--GEVDYIVATDAIGMGLNLDVTHVAFASLA 240
Query: 319 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359
KFDGV+ R LT E+ QIAGRAGR+ G +T D
Sbjct: 241 KFDGVKRRRLTPAEMAQIAGRAGRHHRDGSFGTLTGTGGHD 281
>gi|399065179|ref|ZP_10747801.1| superfamily II RNA helicase [Novosphingobium sp. AP12]
gi|398029998|gb|EJL23439.1| superfamily II RNA helicase [Novosphingobium sp. AP12]
Length = 850
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 118/333 (35%), Positives = 164/333 (49%), Gaps = 30/333 (9%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ + SSG+ PLRLLA EV R+ K S LITG+ER E
Sbjct: 21 LGPTNTGKTHLAIERMCAHSSGMIGFPLRLLAREVYDRVVKIKGEKSVALITGEERIEPP 80
Query: 141 GAKHRAVTVEMADVVSDYDCAV-IDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAA 198
A++ T E V V IDE Q+ + RG FT R L E + G A
Sbjct: 81 NARYLLCTAEAMPVTERSMAFVAIDEAQLAADRERGHVFTDRLLHARGREETMILGSSIA 140
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
PL++ + V G V++ + R S L + S + IV FS +Y + + +
Sbjct: 141 EPLVRAL--VPG--VEIVTRPRFSTLT--HSGAKKLSRVPPRSAIVAFSSEQVYAIAEML 194
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
R + ++V G+L P+TR Q + S E D LVA+DAIGMGLNL++ + F+ +
Sbjct: 195 R-RFRGGAAVVMGALSPQTRNAQVALYQ--SGEVDYLVATDAIGMGLNLDVEHVAFAGLS 251
Query: 319 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC-------LDSEDL---------PL 362
K+DG R LT PE+ QIAGRAGR+ G +T D E++ PL
Sbjct: 252 KYDGRRHRRLTPPEMAQIAGRAGRHQKDGTFGTLTGSGGHDSEFDPEEIYAIEEHRFAPL 311
Query: 363 LHKSLLEPSPMLES-AGLFPNFDLIYMYSRLHP 394
EP P +S A L + + M L P
Sbjct: 312 TKLFWREPEPRFDSLATLIADLETPPMRPELAP 344
>gi|310815305|ref|YP_003963269.1| helicase [Ketogulonicigenium vulgare Y25]
gi|385232845|ref|YP_005794187.1| Helicase [Ketogulonicigenium vulgare WSH-001]
gi|308754040|gb|ADO41969.1| helicase, putative [Ketogulonicigenium vulgare Y25]
gi|343461756|gb|AEM40191.1| Helicase, putative [Ketogulonicigenium vulgare WSH-001]
Length = 951
Score = 147 bits (372), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 155/309 (50%), Gaps = 25/309 (8%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN--VSCDLITGQE 135
+V +GPTN+GKTH A+ R+ S +GI PLRLLA EV R+ A L+TG+E
Sbjct: 6 RVTAVLGPTNTGKTHYAIDRMLSYRTGIIGLPLRLLAREVYDRIVAARGPSVVALVTGEE 65
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH---L 192
R D ++ TVE D IDEIQ+ RG FT L+ A LH
Sbjct: 66 RIIPDRVQYWVCTVEAMPDGMGCDFVAIDEIQLCADPERGHIFTDRLM--YARGLHETLF 123
Query: 193 CGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV---PLNVPLGSFSNIQTGDCIVTFSRH 249
G P I ++ V+ ER S L P + + + IV FS
Sbjct: 124 LGSETMRPAIAALVP----GVQFIRRERFSTLTYTGPQKI-----ARMPERAAIVAFSVD 174
Query: 250 AIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNI 309
+Y + + I R + ++V G+L P TR Q F S + D LVA+DAIGMGLNL+I
Sbjct: 175 EVYAIAEYIR-RTRGGAAVVMGALSPRTRNAQVALFQ--SGDVDYLVATDAIGMGLNLDI 231
Query: 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKS 366
S + FS ++KFDG +RDL E+ QIAGRAGR+ G+ G+V +D+ED+ +
Sbjct: 232 SHVAFSALRKFDGHRMRDLHADELAQIAGRAGRHLSPGTFGVTGDVPEMDAEDVAAIEAH 291
Query: 367 LLEPSPMLE 375
P L+
Sbjct: 292 QFRPVSRLQ 300
>gi|402824780|ref|ZP_10874119.1| ATP-dependent helicase [Sphingomonas sp. LH128]
gi|402261711|gb|EJU11735.1| ATP-dependent helicase [Sphingomonas sp. LH128]
Length = 832
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 103/266 (38%), Positives = 144/266 (54%), Gaps = 15/266 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ + SSG+ PLRLLA EV R+ K S LITG+ER E
Sbjct: 5 LGPTNTGKTHLAIERMCAHSSGMIGFPLRLLAREVYDRVVKIKGEASVALITGEERIEPK 64
Query: 141 GAKHRAVTVEMADVVSDYDCA--VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPA 197
A++ T E A VS+ A IDE Q+ + RG FT R L E + G
Sbjct: 65 NARYLLCTAE-AMPVSERSMAFVAIDEAQLAADRERGHVFTDRLLHARGREETMILGSST 123
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
PL++ ++ V+V + R S L + S + IV FS +Y + +
Sbjct: 124 VEPLVKALVP----GVEVVTRPRFSTLT--HAGAKKLSRVPPRSAIVAFSTEQVYAIAEM 177
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 317
+ R + ++V G+L P+TR Q + S E D LVA+DAIGMGLNL++ + F+ +
Sbjct: 178 LR-RFRGGAAVVMGALSPQTRNAQVALYQ--SGEVDYLVATDAIGMGLNLDVEHVAFAGL 234
Query: 318 KKFDGVELRDLTVPEVKQIAGRAGRY 343
K+DG R LT PE+ QIAGRAGR+
Sbjct: 235 SKYDGRRHRRLTPPEMAQIAGRAGRH 260
>gi|87198147|ref|YP_495404.1| helicase-like protein [Novosphingobium aromaticivorans DSM 12444]
gi|87133828|gb|ABD24570.1| helicase-like protein [Novosphingobium aromaticivorans DSM 12444]
Length = 855
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 102/280 (36%), Positives = 143/280 (51%), Gaps = 12/280 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ RL + SSG PLRLLA EV R+ K + LITG+ER E
Sbjct: 29 LGPTNTGKTHLAIERLCAHSSGAIGFPLRLLAREVYDRVCAIKGADNVALITGEERIEPK 88
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAV 199
GA+ TVE D +DE Q+ RG FT L+ E L G
Sbjct: 89 GARWHLCTVEAMPSRPDLAFVALDEAQLSADPERGHVFTDRLMHTRGREETMLLGSSTLE 148
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
P+++ ++ + +V + R S L +V S I IV FS +Y + + +
Sbjct: 149 PMVKALVP----EAEVVTRPRFSTLT--HVGAKKLSRIPPRSAIVAFSAEQVYVMAEMLR 202
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R + ++V G+L P+TR Q + + E D LVA+DAIGMGLNL++ + F+ + K
Sbjct: 203 -RFRGGAAVVMGALSPQTRNAQVAMYQ--AGEVDYLVATDAIGMGLNLDVHHVAFAGLSK 259
Query: 320 FDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359
FDG R LT E+ QIAGRAGR+ G + + D
Sbjct: 260 FDGHRQRRLTTAEMAQIAGRAGRHQRDGTFGALAGMGGHD 299
>gi|406922774|gb|EKD60142.1| hypothetical protein ACD_54C00916G0001, partial [uncultured
bacterium]
Length = 846
Score = 147 bits (371), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 110/311 (35%), Positives = 155/311 (49%), Gaps = 19/311 (6%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ +G+ PLRLLA EV R+ ++ L+TG+ER D
Sbjct: 11 LGPTNTGKTHYAIERMLGHRTGVIGLPLRLLAREVYDRIVASRGPSVVALVTGEERIVPD 70
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAV 199
A++ TVE + D +DEIQ+ RG FT R L +E G
Sbjct: 71 RAQYWVCTVEAMPLDIGADFVAVDEIQLCADPDRGHVFTDRLLRARGLHETLFMGAETMR 130
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
P I +++ V+ +R S L S + IV FS +Y + + I
Sbjct: 131 PAIAGLIK----GVQFLKRDRFSELTYTGS--KKISRMPERSAIVGFSVENVYAIAELIR 184
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R K C++V G+L P TR Q + + + D LVA+DAIGMGLNL+I I F+ K
Sbjct: 185 -RTKGGCAVVMGALSPRTRNAQVALYQNG--DVDYLVATDAIGMGLNLDIKHIAFAATSK 241
Query: 320 FDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLES 376
FDG +R L E+ QIAGRAGR+ G+ GEV LD E + + + +P LE
Sbjct: 242 FDGRRMRALYPQELAQIAGRAGRHLENGTFGVTGEVRPLDDETVAAIQEHRFDPVRKLE- 300
Query: 377 AGLFPNFDLIY 387
+ N DL +
Sbjct: 301 ---WRNHDLEF 308
>gi|399073278|ref|ZP_10750326.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
gi|398041644|gb|EJL34699.1| DNA/RNA helicase, superfamily II [Caulobacter sp. AP07]
Length = 852
Score = 147 bits (370), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 100/269 (37%), Positives = 142/269 (52%), Gaps = 12/269 (4%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQE 135
K+ +GPTN+GKTH A+ R+ +SG+ PLRLLA E+ R+ K S LITG+E
Sbjct: 12 KLTAVLGPTNTGKTHLAVERMLGHASGMIGLPLRLLAREIYDRIVKLRGKASVALITGEE 71
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCG 194
+ A + TVE + + + +DEIQ+ RG FT LL E L G
Sbjct: 72 KIAPPRAAYFVCTVEAMPLTREVEFLAVDEIQLCADPERGHIFTHRLLHARGRYETMLLG 131
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
PLI+++L D ++ + ER S L + + +V FS A+Y +
Sbjct: 132 AGTMAPLIRRLLP----DAEIVTRERFSSLTYSGSK--KLTRLPRRSAVVAFSTDAVYAI 185
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ I R + ++V GSL P TR Q + S E D LVA+DAIGMGLN+++ + F
Sbjct: 186 AELIR-RQRGGAAVVMGSLSPRTRNAQVALYQ--SGEVDFLVATDAIGMGLNMDVDHVAF 242
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY 343
+ ++KFDG R L EV QIAGRAGR+
Sbjct: 243 AGLRKFDGRRTRWLYPQEVAQIAGRAGRH 271
>gi|295691057|ref|YP_003594750.1| helicase domain-containing protein [Caulobacter segnis ATCC 21756]
gi|295432960|gb|ADG12132.1| helicase domain protein [Caulobacter segnis ATCC 21756]
Length = 852
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 131/385 (34%), Positives = 184/385 (47%), Gaps = 36/385 (9%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQE 135
K+ +GPTN+GKTH A+ R+ +SG+ PLRLLA E+ R+ K S LITG+E
Sbjct: 12 KLTAVLGPTNTGKTHLAVERMLGHASGMIGLPLRLLAREIYDRVVKLRGKASVALITGEE 71
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCG 194
+ A + TVE + + + +DEIQ+ RG FT LL E G
Sbjct: 72 KIVPARAAYFVCTVEAMPLAREVEFLAVDEIQLCADPERGHIFTHRLLHARGKFETMFLG 131
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
PL++++L D ++ S ER S L + + IV FS A+Y +
Sbjct: 132 AGTMAPLVRRLLP----DAEIVSRERFSNLSYAGSK--KLTRLPRRTAIVAFSTDAVYAI 185
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ I R + ++V GSL P TR Q + S E D LVA+DAIGMGLN+++ + F
Sbjct: 186 AELIR-RQRGGAAVVMGSLSPRTRNAQVALYQ--SGEVDFLVATDAIGMGLNMDVDHVAF 242
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPML 374
+ ++KFDG R L EV QIAGRAGRY G VT D E+ + + L+E +
Sbjct: 243 AGLRKFDGKRTRWLYPQEVGQIAGRAGRYTRDGTFG-VTS-DCEE---IDEDLVE---AV 294
Query: 375 ESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA-----KLSENYF-------FANCEE 422
ES P + +RL SSL G+L E KLS+ A E+
Sbjct: 295 ESHTFEPIVAAEWRNARLD-FSSLPGLLRSLAETPQRGGLKLSDEALDERTLRALAKDED 353
Query: 423 VLKVATVIDQLPLRLHEKYLFCISP 447
V+K +RL E C +P
Sbjct: 354 VIKRCKADRSALIRLWE---VCQTP 375
>gi|338741219|ref|YP_004678181.1| ATP-dependent RNA and DNA helicase [Hyphomicrobium sp. MC1]
gi|337761782|emb|CCB67617.1| conserved protein of unknown function; putative ATP-dependent RNA
and DNA helicase (N-terminal) and conserved C-terminal
DEAD/DEAH box domain protein (C-terminal)
[Hyphomicrobium sp. MC1]
Length = 1071
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 110/294 (37%), Positives = 150/294 (51%), Gaps = 23/294 (7%)
Query: 75 KVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD---LI 131
++R V +GPTN+GKTH A+ R+ SG+ PLRLLA EV R+ K V D LI
Sbjct: 8 RIRNVTAVLGPTNTGKTHLAIERMLGHESGMIGLPLRLLAREVYDRI-KQRVGADKVALI 66
Query: 132 TGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH 191
TG+E+ + + A++ TVE D D IDEIQ+ G RG FT LL H
Sbjct: 67 TGEEKIKPERARYWVSTVEAMPRDIDVDFLAIDEIQLCGDPERGHVFTDRLL-------H 119
Query: 192 LCGDPAAVPLIQQILQVTGDDV----KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFS 247
G + L Q ++ D+ S RLS L + + IV FS
Sbjct: 120 ARGRSETLLLGAQTMRDAISDLIPGANFISRPRLSKLTYSGEK--KITRLPARSAIVAFS 177
Query: 248 RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307
+Y L + I R + ++V G+L P TR Q + EF LVA+DAIGMGLNL
Sbjct: 178 AQEVYALAELIR-RQRGGAAVVLGALSPRTRNAQVALYQSGDVEF--LVATDAIGMGLNL 234
Query: 308 NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
++ + FS ++KFDG R+LT E+ QIAGRAGR+ G+ G LD++
Sbjct: 235 DVDHVAFSALRKFDGYNHRNLTPGEIGQIAGRAGRHMNDGTFGVTGGAEALDAD 288
>gi|85709782|ref|ZP_01040847.1| ATP-dependent helicase [Erythrobacter sp. NAP1]
gi|85688492|gb|EAQ28496.1| ATP-dependent helicase [Erythrobacter sp. NAP1]
Length = 889
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 102/275 (37%), Positives = 145/275 (52%), Gaps = 13/275 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ + SSG+ PLRLLA EV R+ K + LITG+ER E
Sbjct: 17 LGPTNTGKTHLAIERMCAHSSGMMGFPLRLLAREVYDRVRAIKGDAQVALITGEERIEPP 76
Query: 141 GAKHRAVTVEMADVVSDYDCAV-IDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAA 198
A++ T E D + V IDE Q+ RG FT LL E + G
Sbjct: 77 DARYFCCTAEAMDRLGGGHAFVAIDEAQIGADPERGHIFTDRLLNARGREETMILGSATL 136
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
PL++Q++ ++ R S L + S + +V FS +Y + +A+
Sbjct: 137 EPLVRQLIP----GAEMVERPRFSTLT--HAGSAKLSRLPRRSAVVAFSSEQVYAMAEAL 190
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
R + ++V G+L PETR +Q F S E D +VA+DAIGMGLNL++ + F+ +
Sbjct: 191 R-RFRGGAAVVMGALSPETRNKQVELFQ--SGEVDYIVATDAIGMGLNLDLQHVAFAALT 247
Query: 319 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
KFDG R LT E+ QIAGRAGR+ + G +T
Sbjct: 248 KFDGRRKRRLTPSEMAQIAGRAGRHQTDGSFGVLT 282
>gi|307943596|ref|ZP_07658940.1| putative helicase [Roseibium sp. TrichSKD4]
gi|307773226|gb|EFO32443.1| putative helicase [Roseibium sp. TrichSKD4]
Length = 1039
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 109/312 (34%), Positives = 162/312 (51%), Gaps = 16/312 (5%)
Query: 59 FTDLTRPHTWY--PLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWE 116
+ ++RPH P AR + +L GPTN+GKTH A+ R+ + SG+ PLRLLA E
Sbjct: 22 YLSMSRPHPMQLPPAARSRTVTAVL--GPTNTGKTHLAIERMLAQKSGLIGLPLRLLARE 79
Query: 117 V-AKRLNKANV-SCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
V AK +++A V + LITG+E+ ++ TVE + IDE+Q+ G R
Sbjct: 80 VYAKVVDRAGVDAVALITGEEKVIPKAPRYWVSTVEAMPLDLQTGFVAIDEVQLAGNLDR 139
Query: 175 GFSFTRALLGI-CANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGS 233
G FT +L + +E L G PL+++++ + V + R+S L
Sbjct: 140 GHVFTDRVLNLRGQSETLLLGSMTVRPLLEKLIP----GLNVVTRPRMSVLTYAGSK--K 193
Query: 234 FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293
S + IV FS +Y + + I R + ++V GSL P TR Q F + + D
Sbjct: 194 VSRLPARSAIVAFSSDEVYGIAELIR-RQRGGAAVVLGSLSPRTRNAQVELFQNG--DVD 250
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
LVA+DAIGMGLNL++ I F+ +K+DG + R LT E+ QIAGRAGR+ G
Sbjct: 251 HLVATDAIGMGLNLDVDHIAFAGTRKYDGYQYRQLTPAEMGQIAGRAGRHTRDGTFGVTG 310
Query: 354 CLDSEDLPLLHK 365
+D D L+ +
Sbjct: 311 RVDPPDDELVER 322
>gi|339017923|ref|ZP_08644068.1| DNA helicase [Acetobacter tropicalis NBRC 101654]
gi|338752926|dbj|GAA07372.1| DNA helicase [Acetobacter tropicalis NBRC 101654]
Length = 882
Score = 147 bits (370), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 141/263 (53%), Gaps = 12/263 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN--VSCDLITGQEREEVD 140
+GPTN+GKTH AL R+ + +SG+ PLRLLA E +R+ K S LITG+E+
Sbjct: 47 LGPTNTGKTHLALERMLAHTSGVMGFPLRLLARENYERMVKLKGVRSVALITGEEKIIPP 106
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAV 199
GA+ + TVE + D +DEIQ+ RG FT LL E G
Sbjct: 107 GARWFSCTVEAMPMDRRVDFVAVDEIQLCADPERGHVFTDRLLNARGEAETLFLGAETIA 166
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
P+++ +++ +++++ RLS LV + S + IV FS +Y + + I
Sbjct: 167 PVLRTLIR----GIEIETRPRLSNLV--HTGFTRLSRLPPRTAIVAFSAGDVYAIAELIR 220
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R + C++V G L P TR Q + + E D LVA+DAIGMGLN++I + F+ + K
Sbjct: 221 RR-RGGCAVVMGQLSPRTRNAQVALYQN--REVDYLVATDAIGMGLNMDIHHVAFAGLSK 277
Query: 320 FDGVELRDLTVPEVKQIAGRAGR 342
FDG R L E+ QIAGRAGR
Sbjct: 278 FDGSRRRMLAAAEIAQIAGRAGR 300
>gi|197104176|ref|YP_002129553.1| superfamily II DNA and RNA helicase [Phenylobacterium zucineum
HLK1]
gi|196477596|gb|ACG77124.1| superfamily II DNA and RNA helicase [Phenylobacterium zucineum
HLK1]
Length = 850
Score = 146 bits (369), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 155/299 (51%), Gaps = 15/299 (5%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQE 135
+++ +GPTN+GKTH A+ R+ SG+ PLRLLA EV R+ K + LITG+E
Sbjct: 12 RLVAVLGPTNTGKTHLAVERMLGHQSGMIGLPLRLLAREVYDRIVKLRGARAVALITGEE 71
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALL-GICANELHLCG 194
+ ++ TVE + + + +DEIQ+ RG FT LL A E L G
Sbjct: 72 KIVPPRPQYFVCTVEAMPLSVEVEFLAVDEIQLCADPERGHVFTHRLLHARGARETMLLG 131
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
PL++++L ++Q+ ERLS L + + +V FS +Y +
Sbjct: 132 AGTMAPLVRRLL----PHAEIQTRERLSALTYAGPK--KLTRLPRRSAVVAFSADQVYAI 185
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ I R + ++V GSL P TR Q + S E D LVA+DAIGMGLN+++ + F
Sbjct: 186 AELIR-RQRGGAAVVMGSLSPRTRNAQVALYQ--SGEVDFLVATDAIGMGLNMDVDHVAF 242
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEP 370
+ ++KFDG R L E+ QIAGRAGR+ G+ GE +D++ + + EP
Sbjct: 243 AGLRKFDGQRARLLHPQEIGQIAGRAGRFQKNGTFGVTGEAEDMDADLIEAVENHHFEP 301
>gi|296532714|ref|ZP_06895401.1| helicase domain protein, partial [Roseomonas cervicalis ATCC 49957]
gi|296266959|gb|EFH12897.1| helicase domain protein [Roseomonas cervicalis ATCC 49957]
Length = 845
Score = 145 bits (367), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 100/265 (37%), Positives = 142/265 (53%), Gaps = 16/265 (6%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQEREEVD 140
+GPTN+GKTH A++R+ + +SGI PLRLLA E R+ K LITG+E+
Sbjct: 30 LGPTNTGKTHLAITRMLAHASGIIGFPLRLLARENYDRMVAVKGAAQVALITGEEKILPP 89
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALL---GICANELHLCGDPA 197
GAK A TVE + + +DEIQ+ RG FT LL G+ E G
Sbjct: 90 GAKWFACTVEAMPLDRRVEFVAVDEIQLCADPDRGHVFTDRLLHARGLV--ETMFLGAET 147
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
PL+Q+++ +V++ RLS L + + +V FS +Y + +A
Sbjct: 148 IRPLLQRLVP----QAEVETRPRLSEL--RYAGPAKLTRLPPRSAVVAFSAAEVYAIAEA 201
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 317
I R + C++V G L P TR Q + + E D LVA+DAIGMGLN+++ + F+++
Sbjct: 202 IRRR-RGGCAVVMGRLSPRTRNAQVALYQN--REVDFLVATDAIGMGLNMDVDHVAFASL 258
Query: 318 KKFDGVELRDLTVPEVKQIAGRAGR 342
+KFDG R LT E QIAGRAGR
Sbjct: 259 QKFDGHRPRILTAQEAAQIAGRAGR 283
>gi|114326980|ref|YP_744136.1| ATP-dependent DNA helicase [Granulibacter bethesdensis CGDNIH1]
gi|114315154|gb|ABI61214.1| ATP-dependent DNA helicase [Granulibacter bethesdensis CGDNIH1]
Length = 864
Score = 145 bits (365), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 103/282 (36%), Positives = 145/282 (51%), Gaps = 16/282 (5%)
Query: 66 HTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NK 123
HT Y + + +V +GPTN+GKTH A+ R+ + +SGI PLRLLA E R+ K
Sbjct: 7 HTDYISMTQLLPRVKAVLGPTNTGKTHLAMDRMLAHASGIIGFPLRLLARENYDRMVATK 66
Query: 124 ANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALL 183
LITG+E+ GA+ A TVE + + +DEIQ+ RG FT LL
Sbjct: 67 GADRVALITGEEKIIPPGARWFACTVEAMPLDRAVEWIGVDEIQLCADPDRGHVFTDRLL 126
Query: 184 ---GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTG 240
G+ E G PL++ ++ ++++ RLS L + +
Sbjct: 127 HARGMV--ETMFLGAETIRPLLKSLVP----QAEIETRPRLSEL--RHAGAAKLGRLPPR 178
Query: 241 DCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 300
IV FS +Y + + I R K C++V G L P TR Q + D E D LVA+DA
Sbjct: 179 SAIVAFSAGDVYAIAELIRRR-KGGCAVVMGRLSPRTRNAQVALYQD--KEVDFLVATDA 235
Query: 301 IGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGR 342
IGMGLN+++ + F+ + KFDG R L PE+ QIAGRAGR
Sbjct: 236 IGMGLNMDVDHVAFARLSKFDGHRARRLAAPEIAQIAGRAGR 277
>gi|85375454|ref|YP_459516.1| ATP-dependent helicase [Erythrobacter litoralis HTCC2594]
gi|84788537|gb|ABC64719.1| ATP-dependent helicase [Erythrobacter litoralis HTCC2594]
Length = 852
Score = 145 bits (365), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 109/315 (34%), Positives = 158/315 (50%), Gaps = 20/315 (6%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ SSG PLRLLA EV R+ K LITG+ER E
Sbjct: 10 LGPTNTGKTHLAIERMCGHSSGAIGFPLRLLAREVYDRVVAIKGESQVALITGEERIEPP 69
Query: 141 GAKHRAVTVE-MADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAA 198
A++ T E M + +DE Q+ + RG FT R L E L G
Sbjct: 70 HARYFLCTAEAMPSDGGGHAFVALDEAQLSADRERGHIFTDRLLHARGREETMLLGSATL 129
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
P+++ ++ +V++ R S L ++ S + IV FS +Y + + +
Sbjct: 130 EPVLKSLVP----RAQVETRPRFSTLT--HIGPRKLSRLPPRSAIVGFSAEQVYTVAEML 183
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
R + ++V G+L PETR +Q F S E D +VA+DAIGMGLNL+++ + F+++
Sbjct: 184 R-RHRGGAAVVMGALSPETRNKQVELFQ--SGEVDYIVATDAIGMGLNLDVTHVAFASLV 240
Query: 319 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC-------LDSEDLPLLHKSLLEPS 371
KFDGV R LT E+ QIAGRAGR+ G ++ LD E++ + + P
Sbjct: 241 KFDGVRQRRLTPAEMAQIAGRAGRHQKDGTFGTLSGGRGGAAELDEEEIFAIEEHRFAPL 300
Query: 372 PMLESAGLFPNFDLI 386
L P FD I
Sbjct: 301 THLYWREAEPRFDTI 315
>gi|221233631|ref|YP_002516067.1| ATP-dependent DNA helicase [Caulobacter crescentus NA1000]
gi|220962803|gb|ACL94159.1| ATP-dependent DNA helicase [Caulobacter crescentus NA1000]
Length = 855
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 100/269 (37%), Positives = 141/269 (52%), Gaps = 12/269 (4%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQE 135
K+ +GPTN+GKTH A+ R+ +SG+ PLRLLA E+ R+ K + LITG+E
Sbjct: 12 KLTAVLGPTNTGKTHLAVERMLGHASGMIGLPLRLLAREIYDRIVKLRGKAAVALITGEE 71
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCG 194
+ A + TVE + + + +DEIQ+ RG FT LL E G
Sbjct: 72 KIVPARAAYFVCTVEAMPLGREVEFLAVDEIQLCADPERGHIFTHRLLHARGKFETMFLG 131
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
PL++++L D ++ S ER S L + + IV FS A+Y +
Sbjct: 132 AGTMAPLVRRLLP----DAEIVSRERFSNLSYAGSK--KLTRLPRRTAIVAFSTDAVYAI 185
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ I R + ++V GSL P TR Q + S E D LVA+DAIGMGLN+++ + F
Sbjct: 186 AELIR-RQRGGAAVVMGSLSPRTRNAQVALYQ--SGEVDFLVATDAIGMGLNMDVDHVAF 242
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY 343
+ ++KFDG R L EV QIAGRAGRY
Sbjct: 243 AGLRKFDGKRTRWLYPQEVGQIAGRAGRY 271
>gi|407768470|ref|ZP_11115848.1| ATP-dependent helicase MgpS [Thalassospira xiamenensis M-5 = DSM
17429]
gi|407288154|gb|EKF13632.1| ATP-dependent helicase MgpS [Thalassospira xiamenensis M-5 = DSM
17429]
Length = 955
Score = 144 bits (364), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 157/303 (51%), Gaps = 23/303 (7%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWE----VAKRLNKANVSCDLITG 133
+++ +GPTN+GKTH A+ R+ + +SG+ PLRLLA E R+ K V+ LITG
Sbjct: 10 RILAILGPTNTGKTHLAMERMLAHTSGMIGFPLRLLARENYDRAVARVGKGAVA--LITG 67
Query: 134 QEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALL---GICANEL 190
+ER A++ TVE V D IDEIQM RG FT LL GI +E
Sbjct: 68 EERILPKSARYFLCTVEAMPVNKQVDFLAIDEIQMCADPERGHVFTDRLLHARGI--SET 125
Query: 191 HLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHA 250
G P+I+Q++ D+V+ + R S L + + +VTFS
Sbjct: 126 MFMGAETIRPVIRQLI----DNVEFDTRARFSTLTYNGSK--KIQRLPSQSAVVTFSAQE 179
Query: 251 IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS 310
+Y + + + R K ++V G+L P TR Q F + E + L+A+DAIGMGLNL ++
Sbjct: 180 VYAVAELVR-RQKGGAAVVLGALSPRTRNAQVEMFQNG--EVEHLIATDAIGMGLNLELN 236
Query: 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSL 367
+ F+ + KFDG R L+ E QIAGRAGR+ G+ G ++ +D + + +
Sbjct: 237 HVAFAALHKFDGQFNRGLSAAETAQIAGRAGRHMNDGTFGVTGNLSGIDPDIIEQIEAHE 296
Query: 368 LEP 370
EP
Sbjct: 297 FEP 299
>gi|154246580|ref|YP_001417538.1| helicase domain-containing protein [Xanthobacter autotrophicus Py2]
gi|154160665|gb|ABS67881.1| helicase domain protein [Xanthobacter autotrophicus Py2]
Length = 1101
Score = 144 bits (364), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 113/324 (34%), Positives = 161/324 (49%), Gaps = 18/324 (5%)
Query: 68 WYPLARK-KVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANV 126
W L R + R V +GPTN+GKTH A+ R+ SGI PLRLLA EV +R+ + V
Sbjct: 7 WAVLPRNVRARGVSAVLGPTNTGKTHLAIERMLGHDSGIIGLPLRLLAREVYQRIVE-RV 65
Query: 127 SCD---LITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALL 183
D L+TG+E+ + ++ TVE D IDEIQ+ RG FT +L
Sbjct: 66 GADKVALVTGEEKIKPKSPRYWVSTVEAMPRDLDVSFVAIDEIQLATDLDRGHVFTERML 125
Query: 184 GICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDC 242
+E L G PLI+++L V V RLS L S +
Sbjct: 126 NRRGRHETLLLGSATMRPLIEKLLP----GVNVVVRPRLSTLTFAGEK--KISRLPRRSA 179
Query: 243 IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 302
IV FS +Y + + I R + ++V G+L P TR Q + S + D LVA+DAIG
Sbjct: 180 IVAFSAEEVYSIAEFIR-RQRGGAAVVMGALSPRTRNAQVELYQ--SGDVDYLVATDAIG 236
Query: 303 MGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSED 359
MGLNL++ + F++ +KFDG + R L E+ QIAGRAGR G+ G D E
Sbjct: 237 MGLNLDVDHVAFASDRKFDGWQFRKLNASEMAQIAGRAGRATRDGTFGTTGRCPPFDEEL 296
Query: 360 LPLLHKSLLEPSPMLESAGLFPNF 383
+ L + + + + +L+ P+F
Sbjct: 297 VGRLEEHVFDTAKVLQWRNAVPDF 320
>gi|326386139|ref|ZP_08207763.1| helicase-like protein [Novosphingobium nitrogenifigens DSM 19370]
gi|326209364|gb|EGD60157.1| helicase-like protein [Novosphingobium nitrogenifigens DSM 19370]
Length = 863
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 107/289 (37%), Positives = 144/289 (49%), Gaps = 15/289 (5%)
Query: 72 ARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCD 129
AR VR V+ GPTN+GKTH A+ RL + SSG PLRLLA EV R+ K
Sbjct: 26 ARGNVRAVL---GPTNTGKTHLAIERLCAHSSGAIGFPLRLLAREVYDRVVAIKGPAQVA 82
Query: 130 LITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-N 188
LITG+ER E A+ T E D IDE Q+ RG FT LL
Sbjct: 83 LITGEERIEPKNARWLLCTAEAMPQRPDLAFVAIDEAQLSADPERGHVFTDRLLHTRGRE 142
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
E + G P+I+ ++ + +V S R S L + S I IV FS
Sbjct: 143 ETMILGSATLEPMIRALVP----EAEVISRPRFSTLS--HAGAKKLSRIPPRSAIVAFSA 196
Query: 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308
+Y + + + R + ++V G+L P+TR Q + + E D LVA+DAIGMGLNL+
Sbjct: 197 EQVYAMAEMLR-RFRGGAAVVMGALSPQTRNAQVAMYQ--AGEVDYLVATDAIGMGLNLD 253
Query: 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357
+ + F+ + K+DG R LT E+ QIAGRAGR+ G + L S
Sbjct: 254 VHHVAFAGLSKYDGHRQRRLTTAEMAQIAGRAGRHHKDGTFGTLAGLAS 302
>gi|402820775|ref|ZP_10870339.1| hypothetical protein IMCC14465_15730 [alpha proteobacterium
IMCC14465]
gi|402510421|gb|EJW20686.1| hypothetical protein IMCC14465_15730 [alpha proteobacterium
IMCC14465]
Length = 908
Score = 144 bits (364), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 102/294 (34%), Positives = 149/294 (50%), Gaps = 15/294 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD--LITGQEREEVD 140
+GPTN+GKTH A+ R+ +G+ PLRLLA EV R+ K + LITG+E+
Sbjct: 16 LGPTNTGKTHLAIERMLGYETGMIGFPLRLLAREVYDRIVKLKGAGQVALITGEEKILPP 75
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAV 199
+ TVE + D IDEIQ+ RG FT LL N E L G V
Sbjct: 76 DPAYYICTVEAMPISKSVDFMAIDEIQLAADAERGHIFTDRLLHARGNQETMLLGAATMV 135
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
P+++Q+L + S RLS L S + I +FS ++Y + + +
Sbjct: 136 PMVKQLLP----KAHIISRPRLSTLSYAGSK--KLSRLPRRTAITSFSVDSVYAIAEVVR 189
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
+ K ++V G+L P TR Q + S E D +VA+DAIGMGLN+++ + F+ +K
Sbjct: 190 QQ-KGGAAVVMGALSPRTRNAQVDMYQ--SGEVDFMVATDAIGMGLNMDVDHVAFAQTRK 246
Query: 320 FDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEP 370
FDG R+L E+ Q+AGRAGR+ G+ GE+ LD + + + EP
Sbjct: 247 FDGRNHRELGAAELAQVAGRAGRHITDGTFGVTGEMLPLDETLVEQIENNTFEP 300
>gi|389862054|ref|YP_006364294.1| helicase domain-containing protein [Modestobacter marinus]
gi|388484257|emb|CCH85791.1| Helicase domain protein [Modestobacter marinus]
Length = 594
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 100/278 (35%), Positives = 144/278 (51%), Gaps = 11/278 (3%)
Query: 70 PLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVS 127
P + V+ H+GPTNSGKT+++L L ++ SG+Y PLR LA E +L+ +
Sbjct: 49 PTRATRPEHVVFHLGPTNSGKTYESLQALAAAGSGVYAAPLRQLAHEAYAKLSAQLPAGT 108
Query: 128 CDLITGQEREEVD-GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC 186
L TG+E E+D A TVE A V+DE + RG + R LL
Sbjct: 109 VGLSTGEE--EIDPNAPIVCCTVEKAP--DRGRMLVLDEAHWVTDADRGHHWARLLLTGE 164
Query: 187 ANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF 246
E+HL A L+ + L + V+V +++RLS L L P+ ++ +V F
Sbjct: 165 YQEMHLISAAEAY-LVLKPLVADAEQVEVVNHKRLSRLDVLRGPV-RPDAVRPQTLVVAF 222
Query: 247 SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 306
SR +Y + ++ ++YG+LPP TR RF + E DVLV +D IG G+N
Sbjct: 223 SRKTVYAVAAELDQHRAGKVGVLYGALPPATRREVIERFT--TGELDVLVTTDVIGHGIN 280
Query: 307 LNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
+ + ++F+ KFDG ELR L E QIAGRAGRYG
Sbjct: 281 VPATTVLFAETTKFDGQELRPLRTWEAAQIAGRAGRYG 318
>gi|421853108|ref|ZP_16285788.1| DNA helicase [Acetobacter pasteurianus subsp. pasteurianus LMG 1262
= NBRC 106471]
gi|371478685|dbj|GAB30991.1| DNA helicase [Acetobacter pasteurianus subsp. pasteurianus LMG 1262
= NBRC 106471]
Length = 862
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 152/298 (51%), Gaps = 26/298 (8%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN--VSCDLITGQEREEVD 140
+GPTN+GKTH AL R+ + SSG+ PLRLLA E +R+ K S LITG+E+
Sbjct: 27 LGPTNTGKTHLALERMLAHSSGMIGFPLRLLARENYERMVKLKGVRSVGLITGEEKIIPP 86
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAV 199
A+ + TVE + +DEIQ+ RG FT LL +E G
Sbjct: 87 QARWFSCTVEAMPSDRKVEFVAVDEIQLCADPERGHVFTDRLLNARGRSETLFLGAETIA 146
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
PL++ +++ D+++ + RLS L S + IV FS +Y + + I
Sbjct: 147 PLLKSLIR----DIEIDTRPRLSNLT--YTGHMRLSRLPARTAIVAFSMAEVYAIAELIR 200
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R + C++V G L P TR Q + + E D LVA+DAIGMGLN++I I F+ + K
Sbjct: 201 -RKRGGCAVVMGQLSPRTRNAQVALYQN--REVDYLVATDAIGMGLNMDIRHIAFANICK 257
Query: 320 FDGVELRDLTVPEVKQIAGRAGR------YGS-----KFPVGEVTCLDS---EDLPLL 363
FDG R LT E QIAGRAGR +G+ FP G V +++ E LP L
Sbjct: 258 FDGYRNRLLTPAEAAQIAGRAGRGTQDGTFGTTGECPAFPEGMVEAIETHHFEPLPFL 315
>gi|262198861|ref|YP_003270070.1| helicase [Haliangium ochraceum DSM 14365]
gi|262082208|gb|ACY18177.1| helicase domain protein [Haliangium ochraceum DSM 14365]
Length = 793
Score = 144 bits (363), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 138/264 (52%), Gaps = 12/264 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQEREEVD 140
+ PTN+GKTH+A+ R+ +G+ PLRLLA EV R+ L+TG+E+
Sbjct: 7 LAPTNTGKTHRAVERMLEYETGMIGLPLRLLAREVYDRITGMLGESKVALVTGEEKRVPA 66
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAV 199
++ TVE V + D +DEIQ+ RG FT R L E G
Sbjct: 67 QPRYWVCTVESMPVSREVDFLAVDEIQLAAHHQRGHVFTARLLEARGRKETWFLGADTMR 126
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
P+++ +L DV+V SY RLS L V S ++ +V FS +Y L + +
Sbjct: 127 PILRALLP----DVQVSSYPRLSQLRYAGV--SSLRSLPPRSAVVAFSVDEVYELAERLR 180
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R + ++V G+L P TR Q + S E +VA+DAIGMGLN+++ I F+ +K
Sbjct: 181 QR-RGGVAVVLGALSPRTRNAQVALYQ--SGEVQYMVATDAIGMGLNMDVDHIAFAATRK 237
Query: 320 FDGVELRDLTVPEVKQIAGRAGRY 343
+DG E+R L E+ QIAGRAGR+
Sbjct: 238 YDGREVRYLEPSELAQIAGRAGRF 261
>gi|304321952|ref|YP_003855595.1| ATP-dependent DNA helicase [Parvularcula bermudensis HTCC2503]
gi|303300854|gb|ADM10453.1| ATP-dependent DNA helicase [Parvularcula bermudensis HTCC2503]
Length = 1017
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 102/293 (34%), Positives = 151/293 (51%), Gaps = 16/293 (5%)
Query: 54 MKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLL 113
M + + T PH AR V +GPTN+GKTH AL R+ + + G+ PLRLL
Sbjct: 1 MPPLNLSSPTMPHR----ARTAPAGVTAVLGPTNTGKTHYALERMMAYAGGMIGLPLRLL 56
Query: 114 AWEVAKRL--NKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGC 171
A EV ++L + + L+TG+E+ A++ TVE + + IDE+Q+
Sbjct: 57 AREVYEKLVARRGERAVALVTGEEKIIPRAARYFVCTVEAMPLEREVPFLAIDEVQLAAD 116
Query: 172 KTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVP 230
RG FT R L +E G PL+++++ DD+ S +R S L
Sbjct: 117 PERGRVFTDRLLHARGQHETLFLGSDTMRPLLKRLI----DDIDFVSRDRFSNLT--FAG 170
Query: 231 LGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASS 290
+ + IV FS ++Y + + + R + ++V G+L P TR QA +N+
Sbjct: 171 HKKVTRLPRRSAIVAFSADSVYSIAELVR-RQRGGAAVVMGALSPRTRNAQAALYNEG-- 227
Query: 291 EFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
E D LVA+DAIGMGLN++I + F+ KFDG + R L EV QIAGRAGR+
Sbjct: 228 EVDYLVATDAIGMGLNMDIDHVAFAGASKFDGRQSRRLLPAEVGQIAGRAGRH 280
>gi|118591276|ref|ZP_01548674.1| helicase-like protein [Stappia aggregata IAM 12614]
gi|118435948|gb|EAV42591.1| helicase-like protein [Stappia aggregata IAM 12614]
Length = 1060
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 109/301 (36%), Positives = 156/301 (51%), Gaps = 15/301 (4%)
Query: 62 LTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL 121
+ RP T + R V +GPTN+GKTH A+ R+ + SG+ PLRLLA EV R+
Sbjct: 1 MPRPQTMPLPPSARSRTVTAVLGPTNTGKTHLAIERMLAQPSGLIGLPLRLLAREVYNRV 60
Query: 122 -NKANV-SCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
++A + LITG+E+ + TVE + D IDE+Q+ G RG FT
Sbjct: 61 ADRAGPDAVALITGEEKIVPKNPRFWVSTVEAMPLDLKTDFVAIDEVQLAGNLDRGHVFT 120
Query: 180 RALLGI-CANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQ 238
+L + +E L G A PL++++L + V + R+S L S +
Sbjct: 121 DRILNVRGQSETLLLGAATARPLLEKLLP----GLNVVTRPRMSVLEYAGSK--KVSRLP 174
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
IV FS +Y + + I R + ++V GSL P TR Q F + + D LVA+
Sbjct: 175 ARSAIVAFSSDEVYSIAELIR-RQRGGAAVVLGSLSPRTRNAQVELFQNG--DVDHLVAT 231
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCL 355
DAIGMGLNL++ I F+ +K+DG + R LT E+ QIAGRAGR+ G+ G V L
Sbjct: 232 DAIGMGLNLDVHHIAFAGNRKYDGYQYRQLTASEMGQIAGRAGRHTKDGTFGVTGRVDPL 291
Query: 356 D 356
D
Sbjct: 292 D 292
>gi|294084643|ref|YP_003551401.1| helicase domain-containing protein [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292664216|gb|ADE39317.1| helicase domain protein [Candidatus Puniceispirillum marinum
IMCC1322]
Length = 991
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 106/293 (36%), Positives = 153/293 (52%), Gaps = 31/293 (10%)
Query: 71 LARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWE----VAKRLNKANV 126
+AR+ V L +GPTN+GKTH AL R+ +SGI PLRLLA E + RL A V
Sbjct: 1 MARRSAENVTLVLGPTNTGKTHLALERMTGYASGIIGFPLRLLARENYDRLVARLGAAKV 60
Query: 127 SCDLITGQEREEVDGAKHRAVTVE----------MADVVSD-----YDCAVIDEIQMLGC 171
LITG+ER A++ TVE + D + ++ +DEIQ+ G
Sbjct: 61 G--LITGEERIIPASARYICATVESMPESLTLSALGDGAGELPDRRFEFVGVDEIQLAGD 118
Query: 172 KTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVP 230
+ RG FT R + E G A PL++Q+L D K+ +R+S L + P
Sbjct: 119 RERGHVFTDRIIHARGLFETMFMGAETAAPLLRQLLP----DAKIDYRQRMSKLS-YSGP 173
Query: 231 LGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASS 290
+ + +V FS +Y++ + I R + +IV G L P TR Q + +
Sbjct: 174 -KKLTRLPRRAAVVAFSAADVYQIAEFIR-RQRGGAAIVMGRLSPRTRNAQVELYQNG-- 229
Query: 291 EFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
E D L+A+DAIGMGLNL++S + + K+DG ++R LT E+ QIAGRAGR+
Sbjct: 230 EVDFLIATDAIGMGLNLDLSHVSLAADVKYDGRKMRKLTASEMAQIAGRAGRH 282
>gi|421849307|ref|ZP_16282289.1| DNA helicase [Acetobacter pasteurianus NBRC 101655]
gi|371459945|dbj|GAB27492.1| DNA helicase [Acetobacter pasteurianus NBRC 101655]
Length = 862
Score = 144 bits (362), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 152/298 (51%), Gaps = 26/298 (8%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN--VSCDLITGQEREEVD 140
+GPTN+GKTH AL R+ + SSG+ PLRLLA E +R+ K S LITG+E+
Sbjct: 27 LGPTNTGKTHLALERMLAHSSGMIGFPLRLLARENYERMVKLKGVRSVGLITGEEKIIPP 86
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAV 199
A+ + TVE + +DEIQ+ RG FT LL +E G
Sbjct: 87 QARWFSCTVEAMPSDRKVEFVAVDEIQLCADPERGHVFTDRLLNARGRSETLFLGAETIA 146
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
PL++ +++ D+++ + RLS L S + IV FS +Y + + I
Sbjct: 147 PLLKTLIR----DIEIDTRPRLSNLT--YTGHIRLSRLPARTAIVAFSMAEVYAIAELIR 200
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R + C++V G L P TR Q + + E D LVA+DAIGMGLN++I I F+ + K
Sbjct: 201 -RKRGGCAVVMGQLSPRTRNAQVALYQN--REVDYLVATDAIGMGLNMDIRHIAFANICK 257
Query: 320 FDGVELRDLTVPEVKQIAGRAGR------YGS-----KFPVGEVTCLDS---EDLPLL 363
FDG R LT E QIAGRAGR +G+ FP G V +++ E LP L
Sbjct: 258 FDGYRNRLLTPAEAAQIAGRAGRGTQDGTFGTTGECPAFPEGMVEAIETHHFEPLPFL 315
>gi|429767722|ref|ZP_19299909.1| helicase protein [Brevundimonas diminuta 470-4]
gi|429189881|gb|EKY30697.1| helicase protein [Brevundimonas diminuta 470-4]
Length = 832
Score = 144 bits (362), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 150/289 (51%), Gaps = 16/289 (5%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQE 135
+V +GPTN+GKTH A+ R+ +SG+ PLRLLA E+ +R+ + S LITG+E
Sbjct: 5 RVTAILGPTNTGKTHLAVERMLGHASGMIGLPLRLLAREIYERIVKRRGAASVALITGEE 64
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCG 194
+ + TVE + D +DEIQ++ RG FT+ LL E G
Sbjct: 65 KIVPPRPAYFVCTVEAMPLERSVDFLAVDEIQLVADPERGHVFTQRLLHARGRFETMFLG 124
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
PL++ ++ D ++ + +RLS L + + +V FS +Y +
Sbjct: 125 AGTMAPLMRSLVP----DAEIVTRDRLSTLSYAGSK--KLTRLPRRSAVVAFSTEQVYAI 178
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ + R + ++V GSL P TR Q F S E D LVA+DAIGMGLN+++ + F
Sbjct: 179 AELLR-RQRGGAAVVMGSLSPRTRNAQVELFQ--SGEVDFLVATDAIGMGLNMDVDHVAF 235
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDL 360
+ ++KFDG R L E+ QIAGRAGR+ G+ GE LD EDL
Sbjct: 236 AGLRKFDGRRTRWLHAAEIGQIAGRAGRHLRDGTFGVTGEAEELD-EDL 283
>gi|154252150|ref|YP_001412974.1| helicase domain-containing protein [Parvibaculum lavamentivorans
DS-1]
gi|154156100|gb|ABS63317.1| helicase domain protein [Parvibaculum lavamentivorans DS-1]
Length = 997
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 155/300 (51%), Gaps = 15/300 (5%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD--LITGQ 134
R+V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV R+ KA + + LITG+
Sbjct: 21 RRVTAVLGPTNTGKTHLAIERMMAHRTGMIGLPLRLLAREVYDRVVKAKGAREVALITGE 80
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLC 193
E+ A++ TVE + + D IDEIQ+ + RG +FT R L +E +
Sbjct: 81 EKILPPTARYYVCTVEAMPLDLEVDFLAIDEIQLAADRERGHTFTDRLLRARGHSETMML 140
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G LIQ++L D S R S L + + IV FS +Y
Sbjct: 141 GSETVRGLIQKLLP----DTLFISRPRFSELSWTGS--KKITRLPRRSAIVAFSADQVYA 194
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLN+++ +
Sbjct: 195 IAELIR-RQRGGAAVVMGALSPRTRNAQVALYQ--SGDVDFLVATDAIGMGLNMDVDHVA 251
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEP 370
F++ +KFDG R L V E+ QIAGRAGR+ G+ GE L E + + EP
Sbjct: 252 FASTEKFDGRLHRPLHVAELAQIAGRAGRHMNNGTFGVTGEAGPLSDEIVSRIENHQFEP 311
>gi|258541200|ref|YP_003186633.1| DNA helicase [Acetobacter pasteurianus IFO 3283-01]
gi|384041121|ref|YP_005479865.1| DNA helicase [Acetobacter pasteurianus IFO 3283-12]
gi|384049636|ref|YP_005476699.1| DNA helicase [Acetobacter pasteurianus IFO 3283-03]
gi|384052746|ref|YP_005485840.1| DNA helicase [Acetobacter pasteurianus IFO 3283-07]
gi|384055978|ref|YP_005488645.1| DNA helicase [Acetobacter pasteurianus IFO 3283-22]
gi|384058619|ref|YP_005497747.1| DNA helicase [Acetobacter pasteurianus IFO 3283-26]
gi|384061913|ref|YP_005482555.1| DNA helicase [Acetobacter pasteurianus IFO 3283-32]
gi|384117989|ref|YP_005500613.1| DNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256632278|dbj|BAH98253.1| DNA helicase [Acetobacter pasteurianus IFO 3283-01]
gi|256635335|dbj|BAI01304.1| DNA helicase [Acetobacter pasteurianus IFO 3283-03]
gi|256638390|dbj|BAI04352.1| DNA helicase [Acetobacter pasteurianus IFO 3283-07]
gi|256641444|dbj|BAI07399.1| DNA helicase [Acetobacter pasteurianus IFO 3283-22]
gi|256644499|dbj|BAI10447.1| DNA helicase [Acetobacter pasteurianus IFO 3283-26]
gi|256647554|dbj|BAI13495.1| DNA helicase [Acetobacter pasteurianus IFO 3283-32]
gi|256650607|dbj|BAI16541.1| DNA helicase [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256653598|dbj|BAI19525.1| DNA helicase [Acetobacter pasteurianus IFO 3283-12]
Length = 846
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 109/298 (36%), Positives = 152/298 (51%), Gaps = 26/298 (8%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN--VSCDLITGQEREEVD 140
+GPTN+GKTH AL R+ + SSG+ PLRLLA E +R+ K S LITG+E+
Sbjct: 11 LGPTNTGKTHLALERMLAHSSGMIGFPLRLLARENYERMVKLKGVRSVGLITGEEKIIPP 70
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAV 199
A+ + TVE + +DEIQ+ RG FT LL +E G
Sbjct: 71 QARWFSCTVEAMPSDRKVEFVAVDEIQLCADPERGHVFTDRLLNARGRSETLFLGAETIA 130
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
PL++ +++ D+++ + RLS L S + IV FS +Y + + I
Sbjct: 131 PLLKTLIR----DIEIDTRPRLSNLT--YTGHIRLSRLPARTAIVAFSMAEVYAIAELIR 184
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R + C++V G L P TR Q + + E D LVA+DAIGMGLN++I I F+ + K
Sbjct: 185 -RKRGGCAVVMGQLSPRTRNAQVALYQN--REVDYLVATDAIGMGLNMDIRHIAFANICK 241
Query: 320 FDGVELRDLTVPEVKQIAGRAGR------YGS-----KFPVGEVTCLDS---EDLPLL 363
FDG R LT E QIAGRAGR +G+ FP G V +++ E LP L
Sbjct: 242 FDGYRNRLLTPAEAAQIAGRAGRGTQDGTFGTTGECPAFPEGMVEAIETHHFEPLPFL 299
>gi|300024666|ref|YP_003757277.1| helicase [Hyphomicrobium denitrificans ATCC 51888]
gi|299526487|gb|ADJ24956.1| helicase domain protein [Hyphomicrobium denitrificans ATCC 51888]
Length = 1059
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/275 (37%), Positives = 145/275 (52%), Gaps = 18/275 (6%)
Query: 75 KVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN-KANV-SCDLIT 132
++R V +GPTN+GKTH A+ R+ +SG+ PLRLLA EV ++ +A V + LIT
Sbjct: 8 RIRNVTAVLGPTNTGKTHLAIERMLGHNSGMIGLPLRLLAREVYDKIKARAGVENVALIT 67
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHL 192
G+E+ + + A++ TVE D D IDEIQ+ G RG FT LL H
Sbjct: 68 GEEKIKPERARYWVSTVEAMPRDIDVDFLAIDEIQLAGDPERGHVFTDRLL-------HA 120
Query: 193 CGDPAAVPLIQQILQVTGDDV----KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
G + L Q ++ D+ S RLS L + + I+ FS
Sbjct: 121 RGRSETLLLGAQTMREAISDLIPGANFISRPRLSKLTYTGEK--KITRLPARSAIIAFSA 178
Query: 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308
+Y L + I R + ++V G+L P TR Q + EF +VA+DAIGMGLNL+
Sbjct: 179 QEVYALAELIR-RQRGGAAVVLGALSPRTRNAQVALYQSGDVEF--IVATDAIGMGLNLD 235
Query: 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
I + FS ++KFDG R+LT E+ QIAGRAGR+
Sbjct: 236 IDHVAFSALRKFDGQNHRNLTPGEIGQIAGRAGRH 270
>gi|405382540|ref|ZP_11036322.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF142]
gi|397321041|gb|EJJ25467.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF142]
Length = 1045
Score = 143 bits (361), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 150/290 (51%), Gaps = 19/290 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL----NKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV R+ NV+ L+T
Sbjct: 13 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGAQNVA--LVT 70
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ A+ TVE + IDE+Q+ G RG FT +L + E
Sbjct: 71 GEEKISPPNARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGREETL 130
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G P++QQ+L + V RLS L L + + IV FS +
Sbjct: 131 LLGAATMRPILQQLLP----GITVTERPRLSHL--LYAGQKKITRLPQRSAIVAFSADEV 184
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + + E+ LVA+DAIGMGLNL++
Sbjct: 185 YAIAELIR-RQRGGAAVVLGALSPRTRNAQVALYQEGDVEY--LVATDAIGMGLNLDVDH 241
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ F+ +KFDG + R+L E+ QIAGRAGR+ G+ G+V+ D E
Sbjct: 242 VAFAQDRKFDGYQFRNLNPGELGQIAGRAGRHVRDGTFGVTGQVSPFDEE 291
>gi|379736251|ref|YP_005329757.1| putative helicase [Blastococcus saxobsidens DD2]
gi|378784058|emb|CCG03726.1| Putative helicase [Blastococcus saxobsidens DD2]
Length = 603
Score = 143 bits (360), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 97/278 (34%), Positives = 149/278 (53%), Gaps = 11/278 (3%)
Query: 70 PLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVS 127
P+ + +V+ H+GPTNSGKT+++L L ++ SG+Y PLR LA E +L+ +
Sbjct: 52 PMRTVRPTEVVFHLGPTNSGKTYESLQALAATGSGVYAAPLRQLAHEAYAKLSAQLPPGT 111
Query: 128 CDLITGQEREEVDG-AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC 186
L TG+E E+D A TVE A + + V+DE + RG + R LL
Sbjct: 112 VGLSTGEE--EIDPYAPIVCCTVEKAPLRGEL--LVLDESHWIADPDRGHHWARLLLTGE 167
Query: 187 ANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF 246
E+HL A L++ ++ + V V +++RLS L L P+ ++++ +V F
Sbjct: 168 YREMHLISAAEAYLLLKPLVS-DAEHVTVVNHKRLSRLDVLRAPV-RPADVRPQTLVVAF 225
Query: 247 SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 306
SR +Y ++ ++YG+LPP TR RF S E +VLV +D IG G+N
Sbjct: 226 SRKTVYAAAAELDQHRPGKVGVLYGALPPATRREVIERFT--SGEVEVLVTTDVIGHGIN 283
Query: 307 LNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
+ + ++F+ KFDG ++R L E QIAGRAGRYG
Sbjct: 284 VPATTVLFAETTKFDGTKVRPLRSWETAQIAGRAGRYG 321
>gi|340777271|ref|ZP_08697214.1| helicase domain-containing protein [Acetobacter aceti NBRC 14818]
Length = 873
Score = 143 bits (360), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 101/267 (37%), Positives = 140/267 (52%), Gaps = 13/267 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ + SGI PLRLLA E +RL K LITG+E+
Sbjct: 50 LGPTNTGKTHFAIERMLAHPSGIIGFPLRLLARENYERLVARKGASRVALITGEEKIIPP 109
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALL-GICANELHLCGDPAAV 199
A+ + TVE V IDEIQ+ RG FT LL E G
Sbjct: 110 DARWFSCTVEAMPVDRQVSFLAIDEIQLCADPERGHIFTSRLLHARGTGETLFLGAETIA 169
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
PL+++++ ++ + + RLS L P + IV FS +Y + + I
Sbjct: 170 PLMRRLVP----EITIDTRPRLSALT-FTGP-ARLEKLPARSAIVAFSAAELYAIAELIR 223
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
SR + C++V G + P TR Q + + E D LVA+DAIGMGLN++I+ + F+ + K
Sbjct: 224 SR-RGGCAVVMGQMSPRTRNAQVELYQN--REVDYLVATDAIGMGLNMDIAHVAFAGLAK 280
Query: 320 FDGVELRDLTVPEVKQIAGRAGRYGSK 346
FDG R LT E+ QIAGRAGR G+K
Sbjct: 281 FDGSRRRPLTASEIAQIAGRAGR-GTK 306
>gi|110635704|ref|YP_675912.1| helicase-like protein [Chelativorans sp. BNC1]
gi|110286688|gb|ABG64747.1| helicase-like protein [Chelativorans sp. BNC1]
Length = 1037
Score = 142 bits (359), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 107/307 (34%), Positives = 159/307 (51%), Gaps = 19/307 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R + +GPTN+GKTH A+ R+ + SG+ PLRLLA EV A R+ + NV+ LIT
Sbjct: 16 RGITAVLGPTNTGKTHLAIERMVAHESGLIGLPLRLLAREVYHRVASRVGEQNVA--LIT 73
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ GA++ TVE +D IDE+Q+ RG FT LL + E
Sbjct: 74 GEEKIIPPGARYSVCTVEAMPRSTDAAFVAIDEVQLAADLERGHIFTDRLLNLRGRQETL 133
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +++++L+ + V + R+S L + + IV FS +
Sbjct: 134 LLGAGTMRGILEKMLR----GISVVTRPRMSVLTYAGSK--KITRLPRRSAIVAFSADEV 187
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + +IV G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 188 YAIGELIR-RQRGGAAIVLGALSPRTRNAQVALYQ--SGDVDYLVATDAIGMGLNLDVDH 244
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + R+LT E+ QIAGRAGR+ G+ G+V + +
Sbjct: 245 VAFAQNQKFDGFQYRELTAAELGQIAGRAGRHVRDGTFGVTGQVDPFADALVERIETHQF 304
Query: 369 EPSPMLE 375
EP ML+
Sbjct: 305 EPVRMLQ 311
>gi|418053804|ref|ZP_12691860.1| helicase domain protein [Hyphomicrobium denitrificans 1NES1]
gi|353211429|gb|EHB76829.1| helicase domain protein [Hyphomicrobium denitrificans 1NES1]
Length = 1017
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 103/275 (37%), Positives = 145/275 (52%), Gaps = 18/275 (6%)
Query: 75 KVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN-KANV-SCDLIT 132
++R V +GPTN+GKTH A+ R+ +SG+ PLRLLA EV ++ +A V + LIT
Sbjct: 8 RIRNVTAVLGPTNTGKTHLAIERMLGHNSGMIGLPLRLLAREVYDKIKTRAGVENVALIT 67
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHL 192
G+E+ + + A++ TVE D D IDEIQ+ G RG FT LL H
Sbjct: 68 GEEKIKPERARYWVSTVEAMPRDIDVDFLAIDEIQLCGDPERGHVFTDRLL-------HA 120
Query: 193 CGDPAAVPLIQQILQVTGDDV----KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
G + L Q ++ D+ S RLS L + + I+ FS
Sbjct: 121 RGRSETLLLGAQTMRDAISDLIPGANFISRPRLSKLTYTGEK--KITRLPARSAIIAFSA 178
Query: 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308
+Y L + I R + ++V G+L P TR Q + EF +VA+DAIGMGLNL+
Sbjct: 179 QDVYALAELIR-RQRGGAAVVLGALSPRTRNAQVALYQSGDVEF--IVATDAIGMGLNLD 235
Query: 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
I + FS ++KFDG R+LT E+ QIAGRAGR+
Sbjct: 236 IDHVAFSALRKFDGQNHRNLTPGEIGQIAGRAGRH 270
>gi|365854506|ref|ZP_09394578.1| helicase protein, partial [Acetobacteraceae bacterium AT-5844]
gi|363720047|gb|EHM03339.1| helicase protein, partial [Acetobacteraceae bacterium AT-5844]
Length = 846
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 101/270 (37%), Positives = 144/270 (53%), Gaps = 18/270 (6%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVS--CDLITGQE 135
K IL GPTN+GKTH A++R+ + +SGI PLRLLA E R+ A + LITG+E
Sbjct: 19 KAIL--GPTNTGKTHLAITRMLAHASGIIGFPLRLLARENYDRMVAAKGARYVALITGEE 76
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALL---GICANELHL 192
+ AK A TVE + + +DEIQ+ RG FT LL G+ E
Sbjct: 77 KIVPPEAKWFACTVEAMPLDRKAEFVAVDEIQLCADPDRGHIFTDRLLHARGLV--ETMF 134
Query: 193 CGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIY 252
G PL+Q+++ ++++ RLS L + + +V FS +Y
Sbjct: 135 LGAETIRPLLQRLVP----QAEIETRPRLSQLEYAGP--AKLTRLPPRSAVVAFSAGEVY 188
Query: 253 RLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRI 312
+ +AI R + C++V G L P TR Q + + E D LVA+DAIGMGLN+++ +
Sbjct: 189 AIAEAIRRR-RGGCAVVMGRLSPRTRNAQVALYQN--REVDFLVATDAIGMGLNMDVDHV 245
Query: 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGR 342
F++++KFDG R LT E QIAGRAGR
Sbjct: 246 AFASLQKFDGHRPRPLTAQEAAQIAGRAGR 275
>gi|349686997|ref|ZP_08898139.1| DNA helicase [Gluconacetobacter oboediens 174Bp2]
Length = 845
Score = 142 bits (358), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 141/264 (53%), Gaps = 14/264 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ RL S SSGI PLRLLA E R+ K + LITG+E+
Sbjct: 7 LGPTNTGKTHLAIERLLSHSSGIIGFPLRLLARENYDRMVAKKGEHAVALITGEEKIIPP 66
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI--CANELHLCGDPAA 198
A+ + TVE + + +DEIQ+ RG FT LL + + L D
Sbjct: 67 KARWFSCTVEAMPLDRRVEFVAVDEIQLCADPDRGHIFTDRLLHARGLSETMFLGAD--- 123
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
I+ +++ ++++ RLS L + + + IV FS +Y + + +
Sbjct: 124 --TIRHLIRRLVPGIEIEHRPRLSQLT--HAGACKLTRLPPRSAIVAFSAGEVYAIAELL 179
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
R + C+IV G L P TR Q + + E D LVA+DAIGMGLN++++ + F+++
Sbjct: 180 RRR-RGGCAIVMGQLSPRTRNAQVALYQE--KEVDYLVATDAIGMGLNMDVNHVAFASLS 236
Query: 319 KFDGVELRDLTVPEVKQIAGRAGR 342
KFDG +R LT E+ Q+AGRAGR
Sbjct: 237 KFDGTRIRPLTAGEIAQVAGRAGR 260
>gi|347761891|ref|YP_004869452.1| DNA helicase [Gluconacetobacter xylinus NBRC 3288]
gi|347580861|dbj|BAK85082.1| DNA helicase [Gluconacetobacter xylinus NBRC 3288]
Length = 870
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 106/305 (34%), Positives = 154/305 (50%), Gaps = 24/305 (7%)
Query: 70 PLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVS 127
P + + VR V+ GPTN+GKTH A+ RL S SGI PLRLLA E R+ K +
Sbjct: 22 PHSDRMVRAVL---GPTNTGKTHLAIERLLSHGSGIIGFPLRLLARENYDRMVARKGAQA 78
Query: 128 CDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI-- 185
LITG+E+ A+ + TVE + + +DEIQ+ RG FT LL
Sbjct: 79 VALITGEEKIVPPNARWFSCTVEAMPLDRRVEFVAVDEIQLCADPDRGHIFTDRLLHARG 138
Query: 186 CANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVT 245
A + L D I+ +++ ++++ RLS L + + + IV
Sbjct: 139 TAETMFLGAD-----TIRNLIRRLVPGIEIEHRPRLSQLT--HAGGCKLTRLPPRSAIVA 191
Query: 246 FSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGL 305
FS +Y + + + R + C+IV G L P TR Q + + E D LVA+DAIGMGL
Sbjct: 192 FSASEVYAIAELLRRR-RGGCAIVMGQLSPRTRNAQVALYQE--KEVDYLVATDAIGMGL 248
Query: 306 NLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV-TCLDSEDLPLLH 364
N++++ + F+++ KFDG +R L E+ Q+AGRAGR G TC P LH
Sbjct: 249 NMDVNHVAFASLSKFDGARVRPLNAGEIAQVAGRAGRGLRDGTFGTTGTC------PPLH 302
Query: 365 KSLLE 369
+ L E
Sbjct: 303 EELAE 307
>gi|389878914|ref|YP_006372479.1| Helicase-like protein [Tistrella mobilis KA081020-065]
gi|388529698|gb|AFK54895.1| Helicase-like protein [Tistrella mobilis KA081020-065]
Length = 880
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 101/280 (36%), Positives = 149/280 (53%), Gaps = 15/280 (5%)
Query: 67 TWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANV 126
T P ++R V+ GPTN+GKTH A+ R+ + +G+ PLRLLA EV R+ +A
Sbjct: 2 TIAPEGSARLRAVL---GPTNTGKTHLAVERMLAHRTGMMGFPLRLLAREVYDRVARAKG 58
Query: 127 S--CDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLG 184
+ LITG+E+ A++ TVE + + +DEIQ+ RG FT LL
Sbjct: 59 ADKVALITGEEKIVPPEARYFLCTVESMPLDLGVEFLCVDEIQLAADPDRGHIFTDRLLH 118
Query: 185 ICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCI 243
E G PL++++L +++ S R+S LV S + + I
Sbjct: 119 ARGFAETMFLGAETIAPLMRRLLP----GIEIDSRPRMSKLVYTGAK--SLTRLPPRTAI 172
Query: 244 VTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM 303
V FS +Y + + I R + ++V G+L P TR Q + + E D LVA+DAIGM
Sbjct: 173 VAFSAADVYAIAE-IMRRQRGGAAVVMGALSPRTRNAQVEMYQE--GEVDFLVATDAIGM 229
Query: 304 GLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
GLNL++ + F+ +KFDG +LR LT E+ QIAGRAGR+
Sbjct: 230 GLNLDVDHVCFAATRKFDGRDLRPLTAQELAQIAGRAGRH 269
>gi|296448356|ref|ZP_06890245.1| helicase domain protein [Methylosinus trichosporium OB3b]
gi|296254148|gb|EFH01286.1| helicase domain protein [Methylosinus trichosporium OB3b]
Length = 954
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 112/322 (34%), Positives = 160/322 (49%), Gaps = 19/322 (5%)
Query: 73 RKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSC 128
R + V +GPTN+GKTH A+ R+ S SG+ PLRLLA EV A+R+ ANV+
Sbjct: 16 RARAAGVAALLGPTNTGKTHHAIERMLSYPSGMIGLPLRLLAREVYQRVAERVGAANVA- 74
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICA 187
L+TG+E+ + A + TVE D D +DEIQ+ RG FT R
Sbjct: 75 -LVTGEEKIKPRAASYWISTVEAMPRDLDVDFVAVDEIQLAADLDRGHVFTDRLAYWRGR 133
Query: 188 NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFS 247
E L G PLI+++L + + RLS L + + IV FS
Sbjct: 134 QETLLIGAETMRPLIERLLP----GAPIFTRPRLSRLTFAGER--KLARLPPRSAIVAFS 187
Query: 248 RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307
+Y + + I+ R + ++V G+L P TR Q + + + D LVA+DAIGMGLNL
Sbjct: 188 VEDVYAIAEWIK-RQRGGAAVVLGALSPRTRNAQVDLYQN--GDVDYLVATDAIGMGLNL 244
Query: 308 NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLH 364
++ I F+ +KFDG+ R LT E QIAGRAGR+ G+ G D + + L
Sbjct: 245 DVDHIAFAADRKFDGLRHRRLTPAEFGQIAGRAGRHMSDGAFGTTGRCPPFDEDLIEDLE 304
Query: 365 KSLLEPSPMLESAGLFPNFDLI 386
+P +L+ +FD I
Sbjct: 305 SHRFDPVTLLQWRNADLDFDSI 326
>gi|418938946|ref|ZP_13492397.1| helicase domain-containing protein [Rhizobium sp. PDO1-076]
gi|375054430|gb|EHS50787.1| helicase domain-containing protein [Rhizobium sp. PDO1-076]
Length = 1039
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 119/379 (31%), Positives = 176/379 (46%), Gaps = 23/379 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ + SGI PLRLLA EV +R+ NV+ L+T
Sbjct: 11 RSVTAVLGPTNTGKTHFAIERMVAHGSGIIGLPLRLLAREVYTRVVERVGVQNVA--LVT 68
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ A+ TVE + IDEIQ+ G RG FT LL + +E
Sbjct: 69 GEEKISPPNARFSVCTVEAMPRETKASFVAIDEIQLAGDLERGHIFTDRLLHLRGRDETL 128
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G ++ Q+L + + RLS L + + IV FS +
Sbjct: 129 LLGSATMKQILIQLLP----GITIVERPRLSQL--FYAGQKKITRLPQRTAIVAFSADEV 182
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + + E+ LVA+DAIGMGLNL++
Sbjct: 183 YAIAELIR-RQRGGAAVVLGALSPRTRNAQVGLYQEGDVEY--LVATDAIGMGLNLDVDH 239
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + R+L E+ QIAGRAGR+ G+ G V D E + L
Sbjct: 240 VAFAQDRKFDGFQFRNLNAGELGQIAGRAGRHLKDGTFGVTGRVDPFDDELVERLEAHQF 299
Query: 369 EPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVAT 428
+P +L+ ++ + R + G L L F A EV+ +A
Sbjct: 300 DPVKVLQWRTSHFDYSSVAALQRSLDTAPKVGGLTRALPAIDQQALEFLARYPEVIDLAN 359
Query: 429 VIDQLPLRLHEKYLFCISP 447
P R+ + + C P
Sbjct: 360 ----RPERVEKLWEACALP 374
>gi|357030981|ref|ZP_09092925.1| ATP-dependent DNA helicase [Gluconobacter morbifer G707]
gi|356415675|gb|EHH69318.1| ATP-dependent DNA helicase [Gluconobacter morbifer G707]
Length = 851
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 99/263 (37%), Positives = 141/263 (53%), Gaps = 12/263 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQEREEVD 140
+GPTN+GKTH AL+R+ + +SGI PLRLLA E +RL K + LITG+E+
Sbjct: 23 LGPTNTGKTHYALTRMMAHASGIIGFPLRLLARENYERLVQAKGEHAVALITGEEKIVPP 82
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAV 199
A+ + TVE + + +DEIQ+ RG FT LL E G
Sbjct: 83 RARWFSCTVEAMPLDRQAEFVAVDEIQLAADPDRGHIFTDRLLHARGTVETLFLGAETIR 142
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
PL+Q++ V G ++ +++ RLS LV + S + IV FS +Y L + I
Sbjct: 143 PLLQKL--VPGVEIDIRT--RLSSLV--STGYTKLSRLPPRSAIVAFSVGEVYALAEVIR 196
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R + C+++ G L P TR Q + + E D LVA+DAIGMGLN+++ + + + K
Sbjct: 197 RR-RGGCAVIMGQLSPRTRNAQVELYQN--REVDYLVATDAIGMGLNMDVDHVALAQLSK 253
Query: 320 FDGVELRDLTVPEVKQIAGRAGR 342
FDG R L E+ QIAGRAGR
Sbjct: 254 FDGTAPRPLYPQEIAQIAGRAGR 276
>gi|407975288|ref|ZP_11156194.1| helicase-like protein [Nitratireductor indicus C115]
gi|407429373|gb|EKF42051.1| helicase-like protein [Nitratireductor indicus C115]
Length = 1002
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 107/317 (33%), Positives = 163/317 (51%), Gaps = 21/317 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV A ++ +ANV+ LIT
Sbjct: 16 RDVTAILGPTNTGKTHLAIERMVAHHTGVIGLPLRLLAREVYARVAAKVGEANVA--LIT 73
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ GA++ TVE +D IDE+Q+ RG FT +L + E
Sbjct: 74 GEEKITPPGARYSVCTVEAMPRETDAAFVAIDEVQLAADLERGHIFTDRILHLRGRQETL 133
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +++++L + V + R+S L + + IV FS +
Sbjct: 134 LLGAGTMRGILEKLLP----GLSVITRPRMSVLTYAGSR--KITRLPRRSAIVAFSSDEV 187
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 188 YAIGELIR-RQRGGVAVVLGALSPRTRNAQVALYQ--SGDVDYLVATDAIGMGLNLDVDH 244
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + RDL E+ QIAGRAGR+ G+ G+V + + +
Sbjct: 245 VAFAQNRKFDGFQYRDLNAAELGQIAGRAGRHLRDGTFGVTGQVDPFPDDLVQRIEAHQF 304
Query: 369 EPSPMLESAGLFPNFDL 385
EP+ +L+ NFD
Sbjct: 305 EPAKVLQW--RTANFDF 319
>gi|334317959|ref|YP_004550578.1| helicase domain-containing protein [Sinorhizobium meliloti AK83]
gi|334096953|gb|AEG54964.1| helicase domain protein [Sinorhizobium meliloti AK83]
Length = 1023
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 151/292 (51%), Gaps = 12/292 (4%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQ 134
R V +GPTN+GKTH A+ R+ + SG+ PLRLLA EV RL + + + LITG+
Sbjct: 6 RGVTAVLGPTNTGKTHYAIERMIAHDSGVIGLPLRLLAREVYTRLVEKVGHHNVALITGE 65
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLC 193
E+ A++ TVE + IDE+Q+ G RG FT +L + E+ L
Sbjct: 66 EKIAPHRARYSVCTVEAMPRETTASFVAIDEVQLAGDLERGHIFTDRILHLRGRGEMLLL 125
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G P+++ +L + V R+S L L + + IV FS +Y
Sbjct: 126 GAATMRPILEYLLP----GITVVERPRMSQL--LYAGSKKITRLPNRSAIVAFSADEVYA 179
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R + ++V G+L P TR Q + + + D LVA+DAIGMGLNL++ +
Sbjct: 180 IAELIR-RQRGGAAVVLGALSPRTRNAQVALYQEG--DVDYLVATDAIGMGLNLDVDHVA 236
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHK 365
F+ +KFDG + R+L E+ Q+AGRAGR+ G +D D L+H+
Sbjct: 237 FAQDRKFDGYQYRNLNPAELAQVAGRAGRHVRDGTFGVTGRVDPFDEDLVHR 288
>gi|254418943|ref|ZP_05032667.1| Helicase conserved C-terminal domain protein [Brevundimonas sp.
BAL3]
gi|196185120|gb|EDX80096.1| Helicase conserved C-terminal domain protein [Brevundimonas sp.
BAL3]
Length = 838
Score = 142 bits (357), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 104/315 (33%), Positives = 160/315 (50%), Gaps = 15/315 (4%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQE 135
+V +GPTN+GKTH A+ R+ +SG+ PLRLLA E+ +R+ + + LITG+E
Sbjct: 12 RVTAVLGPTNTGKTHLAVERMLGHASGMIGLPLRLLAREIYERIVRQRGAAAVALITGEE 71
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCG 194
+ + TVE + + IDEIQ++ RG FT+ LL E G
Sbjct: 72 KIVPPRPHYFVCTVEAMPLERSVEFLAIDEIQLVADPERGHVFTQRLLHARGRFETMFLG 131
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
PLI++++ DV++ + +RLS L + + IV FS +Y +
Sbjct: 132 AGTMEPLIRRLVP----DVEIVTRDRLSTLSYAGSK--KLTRLPRRSAIVAFSTERVYAI 185
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ I R + ++V GSL P TR Q + S E D LVA+DAIGMGLN+++ + F
Sbjct: 186 AELIR-RQRGGAAVVMGSLSPRTRNAQVALYQ--SGEVDFLVATDAIGMGLNMDVDHVAF 242
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPS 371
+ ++KFDG R L E+ QIAGRAGR+ G+ E LD++ + + + +P
Sbjct: 243 AGLRKFDGRRTRWLHAHEIGQIAGRAGRHLRDGTFGVTAEAEDLDADLVEQVVEHRFDPV 302
Query: 372 PMLESAGLFPNFDLI 386
E +FD +
Sbjct: 303 EAAEWRNARLDFDTL 317
>gi|378827873|ref|YP_005190605.1| ATP-dependent DNA or RNA helicase [Sinorhizobium fredii HH103]
gi|365180925|emb|CCE97780.1| ATP-dependent DNA or RNA helicase [Sinorhizobium fredii HH103]
Length = 1007
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 151/292 (51%), Gaps = 12/292 (4%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQ 134
R V +GPTN+GKTH A+ R+ + SG+ PLRLLA EV RL + + + LITG+
Sbjct: 11 RGVTAVLGPTNTGKTHYAIERMVAHDSGVIGLPLRLLAREVYTRLVEKVGHHNVALITGE 70
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLC 193
E+ A++ TVE + IDE+Q+ G RG FT LL + E L
Sbjct: 71 EKITPHRARYSVCTVEAMPRETTASFVAIDEVQLAGDLERGHIFTDRLLHLRGRGETLLL 130
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G P+++Q+L + V R+S L L + + IV FS +Y
Sbjct: 131 GAATMRPILEQLLP----GITVVERPRMSQL--LYAGSKKITRLPHRSAIVAFSADEVYA 184
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R + ++V G+L P TR Q + + + D LVA+DAIGMGLNL++ +
Sbjct: 185 IAELIR-RQRGGAAVVLGALSPRTRNAQVALYQEG--DVDYLVATDAIGMGLNLDVDHVA 241
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHK 365
F+ +KFDG + R+L E+ Q+AGRAGR+ G +D + L+H+
Sbjct: 242 FAQDRKFDGYQYRNLNPAELAQVAGRAGRHIRDGTFGVTGRVDPFEDELVHR 293
>gi|328542021|ref|YP_004302130.1| helicase [Polymorphum gilvum SL003B-26A1]
gi|326411771|gb|ADZ68834.1| Helicase conserved C-terminal domain protein [Polymorphum gilvum
SL003B-26A1]
Length = 1004
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 101/270 (37%), Positives = 143/270 (52%), Gaps = 24/270 (8%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ + SG+ PLRLLA EV RL + LITG+E+
Sbjct: 5 LGPTNTGKTHLAIERMIAQPSGLIGLPLRLLAREVYGRLVARAGEAAVALITGEEKIIPA 64
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAV 199
+ TVE + D + IDE+Q+ G RG FT +L + +E L G A
Sbjct: 65 APRFWVSTVEAMPLDLDTEFVAIDEVQLAGDLERGHVFTNRILNLRGRSETLLLGAATAR 124
Query: 200 PLIQQILQ----VTGDDVKVQSYERLSPLVPLNVPLGS--FSNIQTGDCIVTFSRHAIYR 253
PL+++++ VT + V SY GS S + T +V FS +Y
Sbjct: 125 PLLEKLIPGLNVVTRPRMSVLSYS------------GSKKISRLPTRSAVVAFSSGEVYA 172
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R + ++V GSL P TR Q F + + D LVA+DAIGMGLNL++ I
Sbjct: 173 IAELIR-RQRGGAAVVLGSLSPRTRNAQVELFQNG--DVDYLVATDAIGMGLNLDVDHIA 229
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
F+ +KFDG + R L+ E+ QIAGRAGR+
Sbjct: 230 FAGNRKFDGYQYRALSPAEMGQIAGRAGRH 259
>gi|15967013|ref|NP_387366.1| hypothetical protein SMc03877 [Sinorhizobium meliloti 1021]
gi|15076286|emb|CAC47839.1| ATP-dependent RNA helicase [Sinorhizobium meliloti 1021]
Length = 926
Score = 141 bits (356), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 150/292 (51%), Gaps = 12/292 (4%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQ 134
R V +GPTN+GKTH A+ R+ + SG+ PLRLLA EV RL + + + LITG+
Sbjct: 11 RGVTAVLGPTNTGKTHYAIERMIAHDSGVIGLPLRLLAREVYTRLVEKVGHHNVALITGE 70
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLC 193
E+ A++ TVE + IDE+Q+ G RG FT +L + E L
Sbjct: 71 EKIAPHRARYSVCTVEAMPRETTASFVAIDEVQLAGDLERGHIFTDRILHLRGRGETLLL 130
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G P+++ +L + V R+S L L + + IV FS +Y
Sbjct: 131 GAATMRPILEYLLP----GITVVERPRMSQL--LYAGSKKITRLPNRSAIVAFSADEVYA 184
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R + ++V G+L P TR Q + + + D LVA+DAIGMGLNL++ +
Sbjct: 185 IAELIR-RQRGGAAVVLGALSPRTRNAQVALYQEG--DVDYLVATDAIGMGLNLDVDHVA 241
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHK 365
F+ +KFDG + R+L E+ Q+AGRAGR+ G +D D L+H+
Sbjct: 242 FAQDRKFDGYQYRNLNPAELAQVAGRAGRHVRDGTFGVTGRVDPFDEDLVHR 293
>gi|334139625|ref|YP_004532819.1| ATP-dependent helicase [Novosphingobium sp. PP1Y]
gi|333937643|emb|CCA91001.1| ATP-dependent helicase [Novosphingobium sp. PP1Y]
Length = 854
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 103/282 (36%), Positives = 146/282 (51%), Gaps = 15/282 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ + SSG PLRLLA EV R+ K + LITG+ER E
Sbjct: 21 LGPTNTGKTHLAIERMCAHSSGAIGFPLRLLAREVYDRVCAIKGEQNVALITGEERIEPK 80
Query: 141 GAKHRAVTVEMADVVSDYDCA--VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPA 197
A++ T E V+ D A IDE Q+ + RG FT R L E + G
Sbjct: 81 HARYLLCTAEAMPVL-DRSLAFVAIDEAQLGADRERGHVFTDRLLHARGREETMILGSST 139
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
P+++ ++ ++ + R S L + S I IV FS +Y + +
Sbjct: 140 LEPMVRALVP----RAEIVTRPRFSTLS--HAGAKKLSRIPPRSAIVAFSTEQVYAIAEM 193
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 317
+ R + ++V G+L P+TR Q + S E D LVA+DAIGMGLNL++ + F+ +
Sbjct: 194 LR-RFRGGAAVVMGALSPQTRNAQVALYQ--SGEVDYLVATDAIGMGLNLDVEHVAFAGL 250
Query: 318 KKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359
KFDGV R LT E+ QIAGRAGR+ G +T + D
Sbjct: 251 SKFDGVRHRRLTTSEMAQIAGRAGRHQKDGTFGTLTGSGTHD 292
>gi|359399021|ref|ZP_09192029.1| ATP-dependent helicase [Novosphingobium pentaromativorans US6-1]
gi|357599566|gb|EHJ61276.1| ATP-dependent helicase [Novosphingobium pentaromativorans US6-1]
Length = 867
Score = 141 bits (356), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 103/282 (36%), Positives = 146/282 (51%), Gaps = 15/282 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ + SSG PLRLLA EV R+ K + LITG+ER E
Sbjct: 34 LGPTNTGKTHLAIERMCAHSSGAIGFPLRLLAREVYDRVCAIKGEQNVALITGEERIEPK 93
Query: 141 GAKHRAVTVEMADVVSDYDCA--VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPA 197
A++ T E V+ D A IDE Q+ + RG FT R L E + G
Sbjct: 94 HARYLLCTAEAMPVL-DRSLAFVAIDEAQLGADRERGHVFTDRLLHARGREETMILGSST 152
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
P+++ ++ ++ + R S L + S I IV FS +Y + +
Sbjct: 153 LEPMVRALVP----RAEIVTRPRFSTLS--HAGAKKLSRIPPRSAIVAFSTEQVYAIAEM 206
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 317
+ R + ++V G+L P+TR Q + S E D LVA+DAIGMGLNL++ + F+ +
Sbjct: 207 LR-RFRGGAAVVMGALSPQTRNAQVALYQ--SGEVDYLVATDAIGMGLNLDVEHVAFAGL 263
Query: 318 KKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359
KFDGV R LT E+ QIAGRAGR+ G +T + D
Sbjct: 264 SKFDGVRHRRLTTSEMAQIAGRAGRHQKDGTFGTLTGSGTHD 305
>gi|357974505|ref|ZP_09138476.1| helicase domain-containing protein [Sphingomonas sp. KC8]
Length = 847
Score = 141 bits (355), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 145/276 (52%), Gaps = 12/276 (4%)
Query: 71 LARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSC 128
++R V+ +GPTN+GKTH A+ R+ SSG PLRLLA EV +R+ K
Sbjct: 1 MSRLTASPVVAVLGPTNTGKTHLAIERMCGHSSGAIGFPLRLLAREVYERVVAIKGPERV 60
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICA 187
LITG+E+ + A+ T E + ++ +DE Q+ RG FT R L
Sbjct: 61 ALITGEEKILPEHARWFCCTAESMPIDREFAFVALDEAQLGADPERGHVFTDRLLRARGR 120
Query: 188 NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFS 247
+E + G P+++Q++ D ++ R S L S + IV FS
Sbjct: 121 DETMILGSETLRPMLRQLVP----DAEIIGRPRFSTLTYAGP--AKLSRLPPRSVIVAFS 174
Query: 248 RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307
+Y + + + R + ++V G+L P TR Q F + E D LVA+DAIGMGLN+
Sbjct: 175 SEEVYAVAEMLR-RLRGGAAVVMGALSPRTRNAQVAMFQ--AGEVDYLVATDAIGMGLNM 231
Query: 308 NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
+++ + F++++KFDG R LTV E+ QIAGRAGR+
Sbjct: 232 DVAHVAFASLRKFDGKRARRLTVSEMAQIAGRAGRH 267
>gi|418404547|ref|ZP_12978002.1| helicase domain-containing protein [Sinorhizobium meliloti
CCNWSX0020]
gi|359501510|gb|EHK74117.1| helicase domain-containing protein [Sinorhizobium meliloti
CCNWSX0020]
Length = 1024
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 150/292 (51%), Gaps = 12/292 (4%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQ 134
R V +GPTN+GKTH A+ R+ + SG+ PLRLLA EV RL + + + LITG+
Sbjct: 11 RGVTAVLGPTNTGKTHYAIERMIAHDSGVIGLPLRLLAREVYTRLVEKVGHHNVALITGE 70
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLC 193
E+ A++ TVE + IDE+Q+ G RG FT +L + E L
Sbjct: 71 EKIAPHRARYSVCTVEAMPRETTASFVAIDEVQLAGDLERGHIFTDRILHLRGRGETLLL 130
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G P+++ +L + V R+S LV + + IV FS +Y
Sbjct: 131 GAATMRPILEYLLP----GITVVERPRMSQLVYAGSK--KITRLPNRSAIVAFSADEVYA 184
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R + ++V G+L P TR Q + + + D LVA+DAIGMGLNL++ +
Sbjct: 185 IAELIR-RQRGGAAVVLGALSPRTRNAQVALYQEG--DVDYLVATDAIGMGLNLDVDHVA 241
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHK 365
F+ +KFDG + R+L E+ Q+AGRAGR+ G +D D L+H+
Sbjct: 242 FAQDRKFDGYQYRNLNPAELAQVAGRAGRHVRDGTFGVTGRVDPFDEDLVHR 293
>gi|359788797|ref|ZP_09291765.1| helicase domain-containing protein [Mesorhizobium alhagi
CCNWXJ12-2]
gi|359255358|gb|EHK58276.1| helicase domain-containing protein [Mesorhizobium alhagi
CCNWXJ12-2]
Length = 1166
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 101/270 (37%), Positives = 142/270 (52%), Gaps = 12/270 (4%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK---ANVSCDLITG 133
R V +GPTN+GKTH A+ R+ + SG+ PLRLLA EV R+ + AN L+TG
Sbjct: 16 RDVTAVLGPTNTGKTHLAIERMVAHESGLIGLPLRLLAREVYGRVCEKVGAN-KVALVTG 74
Query: 134 QEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLC 193
+E+ GAK+ TVE +D IDE+Q+ G RG FT +L + + L
Sbjct: 75 EEKILPPGAKYSVCTVEAMPRETDAAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETLL 134
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
+Q ILQ V V + RLS L + + IV FS +Y
Sbjct: 135 ---LGAATMQGILQRLLRGVSVVTRPRLSHLAYSGAK--KLTRLPPRSAIVAFSADEVYA 189
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++ +
Sbjct: 190 IGELIR-RQRGGVAVVLGALSPRTRNAQVAIYQ--SGDVDFLVATDAIGMGLNLDLDHVA 246
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
F+ +KFDG + R+L E+ QIAGRAGR+
Sbjct: 247 FAQNRKFDGFQYRNLNASELGQIAGRAGRH 276
>gi|40062702|gb|AAR37615.1| ATP-dependent helicase, putative [uncultured marine bacterium 314]
Length = 830
Score = 141 bits (355), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 105/302 (34%), Positives = 157/302 (51%), Gaps = 19/302 (6%)
Query: 76 VRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR-LNK-ANVSCDLITG 133
V+K+ +GPTN+GKTH + + +GI PLRLLA E + +NK LITG
Sbjct: 5 VKKITAVLGPTNTGKTHLGVETMLGYENGILGFPLRLLAREFFDKCVNKIGQEKVALITG 64
Query: 134 QEREEVDGAKHRAVTVEM--ADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH 191
+E+ K+ TVE D++ D+ IDEIQM RG FT LL + ++L
Sbjct: 65 EEKIIPKSPKYYICTVESMPQDILVDF--VAIDEIQMCADHERGHIFTDRLLNLRGDKLT 122
Query: 192 L-CGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHA 250
+ G +I ++ D+V+ S ER S L S + ++ FS
Sbjct: 123 MFLGSHTMKHVIASLI----DNVEFVSRERYSKLTYSGYK--KISRLSPKTAVIAFSIDE 176
Query: 251 IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS 310
IY L + + R K +++ GSL P+TR Q + ++ F LVA+DAIGMG+N++I
Sbjct: 177 IYALAELVR-RQKGGAAVIMGSLSPKTRNSQVELYQSGAANF--LVATDAIGMGINMDID 233
Query: 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSL 367
+ FS +KKFDG + R L + E+ QIAGRAGR+ G+ G+ L + ++ L K
Sbjct: 234 NVSFSNLKKFDGKKTRRLNLSEISQIAGRAGRHINDGNFGITGQCESLSANEIERLEKHE 293
Query: 368 LE 369
L+
Sbjct: 294 LD 295
>gi|384537799|ref|YP_005721884.1| ATP-dependent RNA helicase [Sinorhizobium meliloti SM11]
gi|336034691|gb|AEH80623.1| ATP-dependent RNA helicase [Sinorhizobium meliloti SM11]
Length = 1028
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 150/292 (51%), Gaps = 12/292 (4%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQ 134
R V +GPTN+GKTH A+ R+ + SG+ PLRLLA EV RL + + + LITG+
Sbjct: 11 RGVTAVLGPTNTGKTHYAIERMIAHDSGVIGLPLRLLAREVYTRLVEKVGHHNVALITGE 70
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLC 193
E+ A++ TVE + IDE+Q+ G RG FT +L + E L
Sbjct: 71 EKIAPHRARYSVCTVEAMPRETTASFVAIDEVQLAGDLERGHIFTDRILHLRGRGETLLL 130
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G P+++ +L + V R+S L L + + IV FS +Y
Sbjct: 131 GAATMRPILEYLLP----GITVVERPRMSQL--LYAGSKKITRLPNRSAIVAFSADEVYA 184
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R + ++V G+L P TR Q + + + D LVA+DAIGMGLNL++ +
Sbjct: 185 IAELIR-RQRGGAAVVLGALSPRTRNAQVALYQEG--DVDYLVATDAIGMGLNLDVDHVA 241
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHK 365
F+ +KFDG + R+L E+ Q+AGRAGR+ G +D D L+H+
Sbjct: 242 FAQDRKFDGYQYRNLNPAELAQVAGRAGRHVRDGTFGVTGRVDPFDEDLVHR 293
>gi|103488216|ref|YP_617777.1| helicase-like protein [Sphingopyxis alaskensis RB2256]
gi|98978293|gb|ABF54444.1| helicase-like protein [Sphingopyxis alaskensis RB2256]
Length = 920
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/273 (36%), Positives = 142/273 (52%), Gaps = 12/273 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD--LITGQEREEVD 140
+GPTN+GKTH A+ RL + +SG+ PLRLLA EV R+ + D LITG+ER
Sbjct: 13 LGPTNTGKTHLAVERLTAHASGMIGFPLRLLAREVYDRVVAIKGAADVALITGEERIMPA 72
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAV 199
A++ T+E V D IDE Q+ RG FT R L E + G +
Sbjct: 73 QARYLLGTMEALPVERDVAFVGIDEAQLGADPERGHVFTDRLLRARGREETMILGSASIR 132
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
L++ ++ D ++ + R S L S + IV FS +Y + + +
Sbjct: 133 GLVRDLVP----DAEIVTRPRFSTLSYAGS--SKLSRLPKRSAIVAFSAEEVYAIAEMLR 186
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R ++V G+L P TR Q F + E D LVA+DAIGMGLNL++ + F++++K
Sbjct: 187 -RFSGGAAVVMGALSPRTRNAQVAMFE--AGEVDYLVATDAIGMGLNLDVRHVAFASLQK 243
Query: 320 FDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV 352
FDG LR LT+ E+ QIAGRAGR+ G V
Sbjct: 244 FDGRRLRRLTIAEMAQIAGRAGRHQQDGSFGTV 276
>gi|296115141|ref|ZP_06833782.1| helicase domain protein [Gluconacetobacter hansenii ATCC 23769]
gi|295978242|gb|EFG84979.1| helicase domain protein [Gluconacetobacter hansenii ATCC 23769]
Length = 903
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/271 (36%), Positives = 144/271 (53%), Gaps = 15/271 (5%)
Query: 75 KVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLIT 132
+VR V+ GPTN+GKTH A+ R+ + +SGI PLRLLA E R+ K + LIT
Sbjct: 42 QVRAVL---GPTNTGKTHLAIERMLAHASGIIGFPLRLLARENYDRMVARKGVGAVALIT 98
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELH 191
G+E+ A+ + TVE + +DEIQ+ RG FT LL E
Sbjct: 99 GEEKIVPPNARWFSCTVEAMPLDRRVAFVAVDEIQLCADPDRGHIFTDRLLHARGQVETM 158
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
G PL++++ V G ++++ RLS L + + IV FS +
Sbjct: 159 FLGADTIRPLLRRL--VPG--IEIEHRPRLSHLAYTGA--SKLTRLPPRSAIVAFSAAEV 212
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + C+IV G L P TR Q + + E D LVA+DAIGMGLN++++
Sbjct: 213 YAIAELIRRR-RGGCAIVMGQLSPRTRNAQVALYQN--KEVDYLVATDAIGMGLNMDVNH 269
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGR 342
+ F+++ KFDG +R LT E+ Q+AGRAGR
Sbjct: 270 VAFASLSKFDGTRMRPLTPAEIAQVAGRAGR 300
>gi|399039778|ref|ZP_10735287.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF122]
gi|398062191|gb|EJL53972.1| DNA/RNA helicase, superfamily II [Rhizobium sp. CF122]
Length = 1012
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 150/290 (51%), Gaps = 19/290 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV A+++ NV+ L+T
Sbjct: 13 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVAEKVGIQNVA--LVT 70
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ A+ TVE + IDE+Q+ G RG FT +L + +E
Sbjct: 71 GEEKISPPNARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGRDETL 130
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G P++QQ+L + V RLS L + + IV FS +
Sbjct: 131 LLGAGTMRPILQQLLP----GITVVERPRLSQL--FYAGQKKITRLPQRSAIVAFSADEV 184
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++
Sbjct: 185 YAIAELIR-RQRGGAAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVDH 241
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ F+ +KFDG + R+L E+ QIAGRAGR+ G+ G+V D E
Sbjct: 242 VAFAQDRKFDGYQFRNLNSAELGQIAGRAGRHVRDGTFGVTGQVDPFDEE 291
>gi|330813500|ref|YP_004357739.1| ATP-dependent DNA helicase [Candidatus Pelagibacter sp. IMCC9063]
gi|327486595|gb|AEA81000.1| ATP-dependent DNA helicase [Candidatus Pelagibacter sp. IMCC9063]
Length = 823
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 156/295 (52%), Gaps = 17/295 (5%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
+++I +GPTN+GKTH A+ R+ +G+ PLRLLA EV ++L NV+ LIT
Sbjct: 4 QQIISVLGPTNTGKTHFAVERMLQFETGVIGFPLRLLAREVYDKCVQKLGSNNVA--LIT 61
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHL 192
G+E+ A + TVE + +++ IDEIQM RG FT LL ++L +
Sbjct: 62 GEEKIIPPTANYYLCTVESMPLDLNFEFVGIDEIQMCADPERGHIFTDRLLNYRGDKLTM 121
Query: 193 CGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIY 252
+++ I+ + +RLS L+ S IQ IV FS +Y
Sbjct: 122 F---LGADIMKNIISDLVPSSEFVYRDRLSKLIY--TGHKKISRIQPRSAIVAFSVDEVY 176
Query: 253 RLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRI 312
L + + R + +IV GSL P+TR Q + S + D LVA+DAIGMG+N++I +
Sbjct: 177 ALAEFVR-RQRGGAAIVMGSLSPKTRNSQVELY--QSGDVDFLVATDAIGMGINMDIDHV 233
Query: 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLH 364
F++++K+DG ++R L E+ QI+GRAGRY GS G L SE + L
Sbjct: 234 SFNSIRKYDGKKIRGLRNTEIGQISGRAGRYINNGSFGITGNCEALTSEQIEKLE 288
>gi|86359601|ref|YP_471493.1| ATP-dependent DNA helicase [Rhizobium etli CFN 42]
gi|86283703|gb|ABC92766.1| ATP-dependent DNA helicase protein [Rhizobium etli CFN 42]
Length = 1052
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 151/290 (52%), Gaps = 19/290 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKA----NVSCDLIT 132
R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV R+ + NV+ L+T
Sbjct: 6 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGLQNVA--LVT 63
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ A+ TVE + IDE+Q+ G RG FT +L + +E
Sbjct: 64 GEEKISPPDARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGRDETL 123
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G P++QQIL + + RLS L L + + IV FS +
Sbjct: 124 LLGAATMRPILQQILP----GITIVERPRLSHL--LYAGQKKITRLPQRSAIVAFSADEV 177
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + E+ +VA+DAIGMGLNL++
Sbjct: 178 YAIAELIR-RQRGGAAVVLGALSPRTRNAQVALYQAGDVEY--MVATDAIGMGLNLDVDH 234
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ F+ +KFDG + R+L E+ QIAGRAGR+ G+ G+V+ D E
Sbjct: 235 VAFAQDRKFDGYQFRNLNPAELGQIAGRAGRHVRDGTFGVTGQVSPFDEE 284
>gi|330993481|ref|ZP_08317416.1| ATP-dependent RNA helicase suv3 [Gluconacetobacter sp. SXCC-1]
gi|329759511|gb|EGG76020.1| ATP-dependent RNA helicase suv3 [Gluconacetobacter sp. SXCC-1]
Length = 897
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/292 (34%), Positives = 148/292 (50%), Gaps = 21/292 (7%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ RL S SGI PLRLLA E R+ K + LITG+E+
Sbjct: 58 LGPTNTGKTHLAIERLLSHGSGIIGFPLRLLARENYDRMVARKGAQAVALITGEEKIVPP 117
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI--CANELHLCGDPAA 198
A+ + TVE + + +DEIQ+ RG FT LL A + L D
Sbjct: 118 NARWFSCTVEAMPLDRRVEFVAVDEIQLCADPDRGHIFTDRLLHARGTAETMFLGAD--- 174
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
I+ +++ ++++ RLS L + + + IV FS +Y + + +
Sbjct: 175 --TIRNLIRRLVPGIEIEHRPRLSQLT--HAGGCKLTRLPPRSAIVAFSASEVYAIAELL 230
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
R + C+IV G L P TR Q + + E D LVA+DAIGMGLN++++ + F+++
Sbjct: 231 RRR-RGGCAIVMGQLSPRTRNAQVALYQE--KEVDYLVATDAIGMGLNMDVNHVAFASLS 287
Query: 319 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV-TCLDSEDLPLLHKSLLE 369
KFDG +R L E+ Q+AGRAGR G TC P LH+ L E
Sbjct: 288 KFDGTRVRPLNAGEIAQVAGRAGRGLRDGTFGTTGTC------PPLHEELAE 333
>gi|420246044|ref|ZP_14749553.1| DNA/RNA helicase, superfamily II, partial [Rhizobium sp. CF080]
gi|398044032|gb|EJL36882.1| DNA/RNA helicase, superfamily II, partial [Rhizobium sp. CF080]
Length = 594
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 123/404 (30%), Positives = 189/404 (46%), Gaps = 30/404 (7%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL-NKANVS-CDLITGQ 134
R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV RL K VS L+TG+
Sbjct: 35 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRLVEKVGVSQVALVTGE 94
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLC 193
E+ A+ TVE + IDE+Q+ G RG FT +L + +E L
Sbjct: 95 EKITPPNARFSVCTVEAMPRETKASFVAIDEVQLAGDLERGHIFTDRILHLRGRDETLLL 154
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G P+++++L + V RLS L + + IV FS +Y
Sbjct: 155 GAATMRPILERLLP----GITVVERPRLSQL--FYAGQKKITRLPQRSAIVAFSADEVYA 208
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++ +
Sbjct: 209 IAELIR-RQRGGAAVVLGALSPRTRNAQVGLYQSGDVEY--LVATDAIGMGLNLDVDHVA 265
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEP 370
F+ +KFDG + R L E+ QIAGRAGR+ G+ G+V + E + + +P
Sbjct: 266 FAQDRKFDGYQFRSLNPAELAQIAGRAGRHVRDGTFGVTGQVAPFEDELVERIESHHFDP 325
Query: 371 SPMLESAGLFPNF-DLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATV 429
+L+ +F L + L +L G+ + +Y + E+ +AT
Sbjct: 326 VKVLQWRSKNLDFSSLKALRESLDAAPTLAGLTRALPATDSQAFDY-LSRYPEIKDIATT 384
Query: 430 IDQLPLRLHEKYLFC-------ISPVDMNDDISS--QGLTQFAT 464
P R+ + + C I+P D IS+ L +F T
Sbjct: 385 ----PQRVEKLWEACALPDYRRIAPAQHADLISTLFSDLVRFGT 424
>gi|260575511|ref|ZP_05843510.1| helicase domain protein [Rhodobacter sp. SW2]
gi|259022431|gb|EEW25728.1| helicase domain protein [Rhodobacter sp. SW2]
Length = 877
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 107/301 (35%), Positives = 146/301 (48%), Gaps = 19/301 (6%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQE 135
+V +GPTN+GKTH A+ R+ +G+ PLRLLA EV ++ + L+TG+E
Sbjct: 7 RVTAVLGPTNTGKTHYAIERMLGHRTGVIGLPLRLLAREVYDKIVALRGPSVVALVTGEE 66
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALL---GICANELHL 192
R D ++ TVE + D IDEIQ+ RG FT LL G+ +
Sbjct: 67 RIVPDRTQYWVCTVEAMPLEIGADFVAIDEIQLCADPERGHVFTDRLLRARGLL--DTMF 124
Query: 193 CGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIY 252
G + P I ++ V+ ER S L S + IV FS +Y
Sbjct: 125 LGSDSMRPAIAALVP----GVQFSRRERFSTLTWNGSK--KISRMPARSAIVGFSVENVY 178
Query: 253 RLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRI 312
+ + I R K C++V G+L P TR Q + + + D LVA+DAIGMGLNL+I +
Sbjct: 179 AIAELIR-RQKGGCAVVMGALSPRTRNAQVELYQNG--DVDYLVATDAIGMGLNLDIGHV 235
Query: 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLE 369
FS KFDG +R L E+ QIAGRAGRY GS GE LD E + +
Sbjct: 236 AFSATAKFDGRRMRALFPHELGQIAGRAGRYLEPGSFGVTGEAQVLDDEVIEAIENHRFA 295
Query: 370 P 370
P
Sbjct: 296 P 296
>gi|384531084|ref|YP_005715172.1| helicase domain-containing protein [Sinorhizobium meliloti BL225C]
gi|407722270|ref|YP_006841932.1| hypothetical protein BN406_03061 [Sinorhizobium meliloti Rm41]
gi|433615036|ref|YP_007191834.1| Superfamily II DNA and RNA helicase [Sinorhizobium meliloti GR4]
gi|333813260|gb|AEG05929.1| helicase domain protein [Sinorhizobium meliloti BL225C]
gi|407320502|emb|CCM69106.1| hypothetical protein BN406_03061 [Sinorhizobium meliloti Rm41]
gi|429553226|gb|AGA08235.1| Superfamily II DNA and RNA helicase [Sinorhizobium meliloti GR4]
Length = 1023
Score = 140 bits (354), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 150/292 (51%), Gaps = 12/292 (4%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQ 134
R V +GPTN+GKTH A+ R+ + SG+ PLRLLA EV RL + + + LITG+
Sbjct: 6 RGVTAVLGPTNTGKTHYAIERMIAHDSGVIGLPLRLLAREVYTRLVEKVGHHNVALITGE 65
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLC 193
E+ A++ TVE + IDE+Q+ G RG FT +L + E L
Sbjct: 66 EKIAPHRARYSVCTVEAMPRETTASFVAIDEVQLAGDLERGHIFTDRILHLRGRGETLLL 125
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G P+++ +L + V R+S L L + + IV FS +Y
Sbjct: 126 GAATMRPILEYLLP----GITVVERPRMSQL--LYAGSKKITRLPNRSAIVAFSADEVYA 179
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R + ++V G+L P TR Q + + + D LVA+DAIGMGLNL++ +
Sbjct: 180 IAELIR-RQRGGAAVVLGALSPRTRNAQVALYQEG--DVDYLVATDAIGMGLNLDVDHVA 236
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHK 365
F+ +KFDG + R+L E+ Q+AGRAGR+ G +D D L+H+
Sbjct: 237 FAQDRKFDGYQYRNLNPAELAQVAGRAGRHVRDGTFGVTGRVDPFDEDLVHR 288
>gi|114570842|ref|YP_757522.1| helicase [Maricaulis maris MCS10]
gi|114341304|gb|ABI66584.1| helicase domain protein [Maricaulis maris MCS10]
Length = 925
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 101/289 (34%), Positives = 147/289 (50%), Gaps = 18/289 (6%)
Query: 71 LARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN--VSC 128
L R + +V +GPTN+GKTH A+ R+ +SG+ PLRLLA E+ R+ KA +
Sbjct: 3 LHRNEPGQVTAALGPTNTGKTHLAVERMLGRASGMIGLPLRLLAREIYDRVVKAKGEAAV 62
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICA 187
LITG+E+ A++ TVE V +DEIQ+ RG FT R L
Sbjct: 63 ALITGEEKIVPPNARYFICTVESMPVEKRVAFVAVDEIQLGADTERGHVFTDRLLRARGT 122
Query: 188 NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV---PLNVPLGSFSNIQTGDCIV 244
E L G ++++++ + ++ ER S L P N + + +V
Sbjct: 123 EETMLLGAGTMYRMVRELVP----EAEITYRERFSQLTYAGPAN-----LTRLPRRSAVV 173
Query: 245 TFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMG 304
FS A+Y + + + R + ++V G L P TR Q + S E D LVA+DAIGMG
Sbjct: 174 AFSAEAVYAIAELLRRR-RGGAAVVMGGLSPRTRNAQVELYQ--SGEVDFLVATDAIGMG 230
Query: 305 LNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
LN++I + F+ +KFDG R LT E+ QIAGRAGR+ + GE
Sbjct: 231 LNMDIDHVAFAESRKFDGRRRRRLTAAEMAQIAGRAGRFRNDGTFGETA 279
>gi|158421854|ref|YP_001523146.1| helicase [Azorhizobium caulinodans ORS 571]
gi|158328743|dbj|BAF86228.1| helicase [Azorhizobium caulinodans ORS 571]
Length = 1218
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 109/320 (34%), Positives = 158/320 (49%), Gaps = 19/320 (5%)
Query: 75 KVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDL 130
+ R V +GPTN+GKTH A+ R+ SG+ PLRLLA EV +R+ NV+ L
Sbjct: 147 RARGVTAVLGPTNTGKTHLAIERMLGHESGLIGLPLRLLAREVYQRVVERVGAKNVA--L 204
Query: 131 ITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-E 189
ITG+E+ + ++ TVE D IDE+Q+ RG FT LL E
Sbjct: 205 ITGEEKIKPKNPRYWVATVEAMPRDVDVAFVAIDEVQLATDLDRGHVFTNRLLNRRGRFE 264
Query: 190 LHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRH 249
L G PLIQ+++ V + RLS L + S + IV FS
Sbjct: 265 TMLLGSATMRPLIQKLMP----GVTMVERPRLSTL--MFAGEKKISRLPRRSAIVAFSAE 318
Query: 250 AIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNI 309
+Y + + I R + ++V G+L P TR Q + + + D L+A+DAIGMGLNL++
Sbjct: 319 EVYSIAEFIR-RQRGGAAVVMGALSPRTRNAQVELYQNG--DVDYLIATDAIGMGLNLDV 375
Query: 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKS 366
+ F++ +KFDG + R L E+ QIAGRAGR G+ G LD E + L
Sbjct: 376 DHVAFASDRKFDGWQFRRLNPMEMAQIAGRAGRAMRDGTFGTTGRCPPLDQELVERLEAH 435
Query: 367 LLEPSPMLESAGLFPNFDLI 386
E + +L+ P++ I
Sbjct: 436 DFENARVLQWRNAVPDYRTI 455
>gi|421589710|ref|ZP_16034815.1| hypothetical protein RCCGEPOP_12715, partial [Rhizobium sp. Pop5]
gi|403705278|gb|EJZ20914.1| hypothetical protein RCCGEPOP_12715, partial [Rhizobium sp. Pop5]
Length = 701
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 149/290 (51%), Gaps = 19/290 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL----NKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV R+ NV+ L+T
Sbjct: 13 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGAQNVA--LVT 70
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ A+ TVE + IDE+Q+ G RG FT +L + +E
Sbjct: 71 GEEKISPPNARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGRDETL 130
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G P++QQ+L + V RLS L + + IV FS +
Sbjct: 131 LLGAATMRPILQQLLP----GITVVERPRLSHL--FYGGQKKITRLPQRSAIVAFSADEV 184
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++
Sbjct: 185 YAIAELIR-RQRGGAAVVLGALSPRTRNSQVALYQAGDVEY--LVATDAIGMGLNLDVDH 241
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ F+ +KFDG + R+L E+ QIAGRAGR+ G+ G+V+ D E
Sbjct: 242 VAFAQDRKFDGYQFRNLNPAELGQIAGRAGRHVRDGTFGVTGQVSPFDEE 291
>gi|329114809|ref|ZP_08243566.1| Helicase Domain-Containing Protein [Acetobacter pomorum DM001]
gi|326695940|gb|EGE47624.1| Helicase Domain-Containing Protein [Acetobacter pomorum DM001]
Length = 862
Score = 140 bits (353), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 151/298 (50%), Gaps = 26/298 (8%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN--VSCDLITGQEREEVD 140
+GPTN+GKTH AL R+ + SSG+ PLRLLA E +R+ K S LITG+E+
Sbjct: 27 LGPTNTGKTHLALERMLAHSSGMIGFPLRLLARENYERMVKLKGVRSVGLITGEEKIIPP 86
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAV 199
A+ + TVE + +DEIQ+ RG FT LL +E G
Sbjct: 87 QARWFSCTVEAMPSDRKVEFVAVDEIQLCADPERGHVFTDRLLNARGRSETLFLGAETIA 146
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
PL++ +++ +++ + RLS L S + IV FS +Y + + I
Sbjct: 147 PLLKTLIR----GIEIDTRPRLSNLT--YTGHMRLSRLPARTAIVAFSIAEVYAIAELIR 200
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R + C++V G L P TR Q + + E D LVA+DAIGMGLN++I I F+ + K
Sbjct: 201 -RKRGGCAVVMGQLSPRTRNAQVALYQN--REVDYLVATDAIGMGLNMDIRHIAFANICK 257
Query: 320 FDGVELRDLTVPEVKQIAGRAGR------YGSK-----FPVGEVTCLDS---EDLPLL 363
FDG R LT E QIAGRAGR +G+ FP G V +++ E LP L
Sbjct: 258 FDGYRNRLLTPAEAAQIAGRAGRGTQDGTFGTTGECPPFPEGMVEAIETHHFEPLPFL 315
>gi|440228414|ref|YP_007335505.1| ATP-dependent DNA helicase [Rhizobium tropici CIAT 899]
gi|440039925|gb|AGB72959.1| ATP-dependent DNA helicase [Rhizobium tropici CIAT 899]
Length = 1045
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 149/290 (51%), Gaps = 19/290 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL----NKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ + SG+ PLRLLA EV R+ NV+ L+T
Sbjct: 17 RGVTAVLGPTNTGKTHYAIERMVAHGSGVIGLPLRLLAREVYTRVVEKVGAHNVA--LVT 74
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ A++ TVE + IDE+Q+ G RG FT LL + +E
Sbjct: 75 GEEKISPPNARYSVCTVEAMPRETRASFVAIDEVQLAGDLERGHIFTDRLLHLRGRDETL 134
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G P+++Q+L + V RLS L + + IV FS +
Sbjct: 135 LLGAGTMRPILEQLLP----GITVLERPRLSHL--FYAGQKKITRLPQRTAIVAFSADEV 188
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++
Sbjct: 189 YAIAELIR-RQRGGAAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVDH 245
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ F+ +KFDG + R+L E+ QIAGRAGR+ G+ G+V D E
Sbjct: 246 VAFAQDRKFDGYQFRNLNPGELGQIAGRAGRHLKDGTFGVTGQVDPFDDE 295
>gi|148262068|ref|YP_001236195.1| helicase domain-containing protein [Acidiphilium cryptum JF-5]
gi|326405580|ref|YP_004285662.1| hypothetical protein ACMV_34330 [Acidiphilium multivorum AIU301]
gi|146403749|gb|ABQ32276.1| helicase domain protein [Acidiphilium cryptum JF-5]
gi|325052442|dbj|BAJ82780.1| hypothetical protein ACMV_34330 [Acidiphilium multivorum AIU301]
Length = 837
Score = 140 bits (353), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 141/265 (53%), Gaps = 16/265 (6%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ RL + SSGI PLRLLA E R+ K LITG+E+
Sbjct: 12 LGPTNTGKTHLAIERLLAHSSGIIGFPLRLLARENYDRMVAAKGARHVALITGEEKIVPA 71
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALL---GICANELHLCGDPA 197
A+ + TVE + + +DEIQ+ RG FT LL G+ E G
Sbjct: 72 EARWFSCTVEAMPLDRKVEFVAVDEIQLCADPDRGHVFTDRLLHARGMV--ETMFLG--- 126
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
I+++L+ + ++++ RLS L + S + IV FS +Y + +A
Sbjct: 127 -AETIRRLLRRLVPEAEIETRPRLSQLS--HAGPAKLSRLPPRSAIVAFSAAEVYAIAEA 183
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 317
+ +R + C++V G L P TR Q + + E D LVA+DAIGMGLN+++ + F+ +
Sbjct: 184 VRTR-RGGCAVVMGRLSPRTRNAQVALYQE--KEVDFLVATDAIGMGLNMDVDHVAFAGL 240
Query: 318 KKFDGVELRDLTVPEVKQIAGRAGR 342
KFDG R LT EV QIAGRAGR
Sbjct: 241 SKFDGHRPRLLTASEVAQIAGRAGR 265
>gi|340027356|ref|ZP_08663419.1| helicase domain-containing protein [Paracoccus sp. TRP]
Length = 969
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 104/270 (38%), Positives = 140/270 (51%), Gaps = 15/270 (5%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC--DLITGQE 135
+V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV R+ KA L+TG+E
Sbjct: 6 RVTAVLGPTNTGKTHYAIERMLAHRTGVIGLPLRLLAREVYDRIVKARGPSVVALVTGEE 65
Query: 136 REEVDGAKHRAVTVE-MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLC 193
R + ++ T E M +V +D+ IDEIQ+ RG FT LL + +E L
Sbjct: 66 RIVPERVQYWVATTEAMPEVGADF--VAIDEIQLCADPERGHVFTDRLLHMRGLHETLLL 123
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G P I ++ T + ER S L S + IV FS +Y
Sbjct: 124 GSDTMRPAIAALVPQT----QFMRRERFSTLSWAGSK--KISRMPPRSAIVCFSVDEVYA 177
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ I R K C++V G+L P TR Q + + E D LVA+DAIGMGLNL+I I
Sbjct: 178 TAELIR-RQKGGCAVVMGALSPRTRNAQVAMYQNG--EVDYLVATDAIGMGLNLDIRHIA 234
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
FS +KFDG R L E+ QIAGRAGR+
Sbjct: 235 FSATEKFDGRRFRQLFPHELGQIAGRAGRH 264
>gi|115378380|ref|ZP_01465543.1| helicase conserved C-terminal domain protein [Stigmatella
aurantiaca DW4/3-1]
gi|310823354|ref|YP_003955712.1| helicase [Stigmatella aurantiaca DW4/3-1]
gi|115364615|gb|EAU63687.1| helicase conserved C-terminal domain protein [Stigmatella
aurantiaca DW4/3-1]
gi|309396426|gb|ADO73885.1| helicase [Stigmatella aurantiaca DW4/3-1]
Length = 819
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 142/281 (50%), Gaps = 14/281 (4%)
Query: 79 VILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQER 136
VI +GPTN+GKTH+A+ R+ +GI PLRLLA EV R+ L+TG+E+
Sbjct: 12 VIAELGPTNTGKTHRAIERMLEHDTGIIGLPLRLLAREVYDRVTARVGEGRVALMTGEEK 71
Query: 137 EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGD 195
+ TVE D +DEIQ+ + RG FT LL E G
Sbjct: 72 RVPPRPDYWICTVEAMPADRPVDFLAVDEIQLAAHRERGHVFTDRLLHARGLRETWFLGA 131
Query: 196 PAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLG-SFSNIQTGDCIVTFSRHAIYRL 254
P++Q + + S +R + L L+ G S ++ +V FS +Y L
Sbjct: 132 DTMRPMLQAL-------IPHASLKRATRLSQLSYAGGRSLKSLPPRSAVVAFSADRVYEL 184
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+A+ R + ++V G+L P TR Q + + E LVA+DAIGMGLNL+++ + F
Sbjct: 185 AEALR-RLRGGVAVVLGALSPRTRNAQVAMYQ--AGEVQYLVATDAIGMGLNLDLNHVAF 241
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 355
+ + KFDG E RDL E+ QIAGRAGR+ + G + L
Sbjct: 242 AALSKFDGAEQRDLFPDELAQIAGRAGRHLNDGSFGTLNTL 282
>gi|254293141|ref|YP_003059164.1| helicase [Hirschia baltica ATCC 49814]
gi|254041672|gb|ACT58467.1| helicase domain protein [Hirschia baltica ATCC 49814]
Length = 911
Score = 140 bits (352), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 106/303 (34%), Positives = 151/303 (49%), Gaps = 18/303 (5%)
Query: 74 KKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVS--CDLI 131
K VR V+ GPTN+GKTH A+ R+ + SG+ PLRLLA EV +L K L+
Sbjct: 6 KNVRAVL---GPTNTGKTHLAVERMVAHESGMIGLPLRLLAREVYDKLVKIKGERLVALV 62
Query: 132 TGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANEL 190
TG+ER A++ A TVE + IDEIQ+ RG FT R L +E
Sbjct: 63 TGEERIIPKNARYYACTVEAMPLSIPVSFLAIDEIQIARDPDRGHVFTDRILHARGQHET 122
Query: 191 HLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHA 250
L G P++ L + D + + L+ P+ + + + IV FS
Sbjct: 123 MLLGAETMRPVLN-ALDLHVDAEHRERFSELNYTGPIKI-----TKLPKRTAIVAFSTEE 176
Query: 251 IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS 310
+Y + + + R + ++V G+L P TR Q + S E D LVA+DAIGMGLNL++S
Sbjct: 177 VYSIAELLR-RQRGGSAVVMGALSPRTRNAQVELYQ--SGEVDYLVATDAIGMGLNLDVS 233
Query: 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT---CLDSEDLPLLHKSL 367
I F++ +KFDG R L E QIAGRAGR+ GE + + ED+ +
Sbjct: 234 HIAFASRRKFDGHRSRFLRADEAAQIAGRAGRFRDDGTFGETSDCFLFEEEDIQRVENHT 293
Query: 368 LEP 370
+P
Sbjct: 294 FDP 296
>gi|409439485|ref|ZP_11266534.1| conserved hypothetical protein [Rhizobium mesoamericanum STM3625]
gi|408748861|emb|CCM77715.1| conserved hypothetical protein [Rhizobium mesoamericanum STM3625]
Length = 1011
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 149/290 (51%), Gaps = 19/290 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV A+++ NV+ L+T
Sbjct: 13 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVAEKVGIQNVA--LVT 70
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ A+ TVE + IDE+Q+ G RG FT LL + +E
Sbjct: 71 GEEKISPPNARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRLLHLRGRDETL 130
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G P++QQ+L + V RLS L + + IV FS +
Sbjct: 131 LLGAGTMRPILQQLLP----GITVVERPRLSHL--FYAGQKKITRLPQRSAIVAFSADEV 184
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++
Sbjct: 185 YAIAELIR-RQRGGAAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVDH 241
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ F+ +KFDG + R+L E+ QIAGRAGR+ G G+V D E
Sbjct: 242 VAFAQDRKFDGYQFRNLNPAELGQIAGRAGRHIRDGMFGVTGQVDPFDQE 291
>gi|222150211|ref|YP_002551168.1| ATP-dependent helicase [Agrobacterium vitis S4]
gi|221737193|gb|ACM38156.1| ATP-dependent helicase [Agrobacterium vitis S4]
Length = 1047
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 107/307 (34%), Positives = 154/307 (50%), Gaps = 19/307 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R VI +GPTN+GKTH A+ R+ + SG+ PLRLLA EV +R+ A+V+ LIT
Sbjct: 6 RSVIAVLGPTNTGKTHYAIERMVAHGSGMIGLPLRLLAREVYTRLVERVGAAHVA--LIT 63
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ + TVE + IDEIQ+ G RG FT LL + E
Sbjct: 64 GEEKITPPNTRFSVCTVEALPRETKVAFVAIDEIQLAGDLERGHIFTDRLLHLRGREETL 123
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G P++Q +L + V RLS L + + IV FS +
Sbjct: 124 LLGSATMKPILQHLLP----GITVVERPRLSQL--FYAGEKKITRLPQRTAIVAFSADEV 177
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++
Sbjct: 178 YSIAELIR-RQRGGAAVVLGALSPRTRNAQVGLYQSGDVEY--LVATDAIGMGLNLDVDH 234
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ +KFDG + R+L E+ QIAGRAGR+ G+ G V + E + L
Sbjct: 235 VAFAQDRKFDGYQFRNLNPGELGQIAGRAGRHLKDGTFGVTGRVDPFEPELVERLQSHHF 294
Query: 369 EPSPMLE 375
+P +L+
Sbjct: 295 DPVKVLQ 301
>gi|424897498|ref|ZP_18321072.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2297]
gi|393181725|gb|EJC81764.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2297]
Length = 1104
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 148/290 (51%), Gaps = 19/290 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL----NKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV R+ NV+ L+T
Sbjct: 36 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGAQNVA--LVT 93
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ A+ TVE + IDE+Q+ G RG FT +L + E
Sbjct: 94 GEEKISPPNARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGREETL 153
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G P++QQ+L + V RLS L + + IV FS +
Sbjct: 154 LLGAATMQPILQQLLP----GITVVERPRLSHL--FYAGQKKITRLPQRSAIVAFSADEV 207
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++
Sbjct: 208 YAIAELIR-RQRGGAAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVDH 264
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ F+ +KFDG + R+L E+ QIAGRAGR+ G+ G+V+ D E
Sbjct: 265 VAFAQDRKFDGYQFRNLNPGELGQIAGRAGRHVRDGTFGVTGQVSPFDEE 314
>gi|359408185|ref|ZP_09200657.1| superfamily II RNA helicase [SAR116 cluster alpha proteobacterium
HIMB100]
gi|356676942|gb|EHI49291.1| superfamily II RNA helicase [SAR116 cluster alpha proteobacterium
HIMB100]
Length = 916
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 113/340 (33%), Positives = 171/340 (50%), Gaps = 29/340 (8%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWE----VAKRLNKANVSCDLITGQEREE 138
+GPTN+GKT A+ R+ SSG+ PLRLLA E + RL V+ LITG+E+
Sbjct: 14 LGPTNTGKTFYAMDRMLGYSSGMAGFPLRLLARENYDKLVARLGPGQVA--LITGEEKII 71
Query: 139 VDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPA 197
A++ TVE + DC V+DEIQ+ G + RG FT R L +E L G
Sbjct: 72 PANARYFCCTVEAMPLERSVDCLVVDEIQLCGDRERGHIFTDRLLHARGRHETLLLGAHT 131
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
PL++ +L + + S +R S L + +Q IV FS +YRL +
Sbjct: 132 MRPLLETLLP----EAEFISRDRFSRLS--YAGQKKTTRLQRRSAIVAFSASEVYRLAEL 185
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 317
+ R + ++V G+L P TR Q + + +F L+A+DAIGMGLN++I + +
Sbjct: 186 VR-RQRGGAAVVMGALSPRTRNAQVELYQNGDVDF--LIATDAIGMGLNMDIGHVALADD 242
Query: 318 KKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESA 377
KFDG +R L E+ QIAGRAGR+ + G +ED L + +++ +ES
Sbjct: 243 MKFDGQSMRRLAPSELAQIAGRAGRHTTDGTFGV-----TEDCRPLEQEVID---AIESH 294
Query: 378 GLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFF 417
FP +Y +R + Y L+ L++ + + Y F
Sbjct: 295 -YFPPVRQLYWRAR----NLNYNTLDGLLKSLEAAPPYAF 329
>gi|349699944|ref|ZP_08901573.1| DNA helicase [Gluconacetobacter europaeus LMG 18494]
Length = 870
Score = 139 bits (351), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 94/264 (35%), Positives = 140/264 (53%), Gaps = 14/264 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ RL S SSGI PLRLLA E R+ K + LITG+E+
Sbjct: 32 LGPTNTGKTHLAIERLLSHSSGIIGFPLRLLARENYDRMVAEKGAHAVALITGEEKIIPP 91
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI--CANELHLCGDPAA 198
A+ + TVE + + +DEIQ+ RG FT LL + + L D
Sbjct: 92 KARWFSCTVEAMPLDRRVEFVAVDEIQLCADPDRGHIFTDRLLHARGLSETMFLGAD--- 148
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
I+ +++ ++++ RLS L + + + IV FS +Y + + +
Sbjct: 149 --TIRNLIRRLVPGIEIEHRPRLSQLT--HAGACKLTRLPPRSAIVAFSAGEVYAIAELL 204
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
R + C+IV G L P TR Q + + E D LVA+DAIGMGLN++++ + F+++
Sbjct: 205 RRR-RGGCAIVMGQLSPRTRNAQVALYQE--KEVDYLVATDAIGMGLNMDVNHVAFASLS 261
Query: 319 KFDGVELRDLTVPEVKQIAGRAGR 342
KFDG +R L E+ Q+AGRAGR
Sbjct: 262 KFDGTRIRPLAAGEIAQVAGRAGR 285
>gi|323450513|gb|EGB06394.1| hypothetical protein AURANDRAFT_65725 [Aureococcus anophagefferens]
Length = 894
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 104/295 (35%), Positives = 149/295 (50%), Gaps = 28/295 (9%)
Query: 70 PLAR---KKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV--------A 118
P AR K V+ ++GPTNSGKT +AL L S G Y GPLR LAWEV A
Sbjct: 63 PAARTGLKAPESVVCYLGPTNSGKTWRALDFLASRGDGCYAGPLRALAWEVRESMVERVA 122
Query: 119 KRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSF 178
++ K L TG+E E+ D A T E+A +D D V+DE+ RG ++
Sbjct: 123 EKWGKIAPGVGLWTGEESEDAD-ASVLCCTAEVAP--ADGDVLVLDEVHWCVDGWRGHAW 179
Query: 179 TRALLGICANE---LHLCGDPAAVPLIQQILQVTGDD--VKVQSYERLSPLVPLN--VPL 231
TR L+ + + +CG A+PL++++ + D +V R S L L
Sbjct: 180 TRLLMAAKSGRYRHVRVCGPVEALPLLERVFEANVADGTFEVDRTARRSRLTFEGDVGDL 239
Query: 232 GSFSNIQTGD----CIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFND 287
SF + + +V FSR ++ L A ++ S+++G LPPE R Q D
Sbjct: 240 TSFLRARVAEKRFVAVVAFSRSSVLALAAAAQAA-GARASVIFGKLPPEARRSQLEAARD 298
Query: 288 ASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGR 342
+ DV+V +D IG G+NL + ++F+ +KFDG RDL V E Q+AGRAGR
Sbjct: 299 GT--LDVIVCTDVIGHGINLPLDDVVFAETRKFDGTSKRDLDVWEAAQVAGRAGR 351
>gi|398355534|ref|YP_006400998.1| ATP-dependent DNA and RNA helicase protein [Sinorhizobium fredii
USDA 257]
gi|390130860|gb|AFL54241.1| ATP-dependent DNA and RNA helicase protein [Sinorhizobium fredii
USDA 257]
Length = 999
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 100/292 (34%), Positives = 150/292 (51%), Gaps = 12/292 (4%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQ 134
R V +GPTN+GKTH A+ R+ + SG+ PLRLLA EV RL + + + LITG+
Sbjct: 11 RGVTAVLGPTNTGKTHYAIERMVAHDSGVIGLPLRLLAREVYTRLVEKVGHHNVALITGE 70
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLC 193
E+ A++ TVE + IDE+Q+ G RG FT LL + E L
Sbjct: 71 EKITPHRARYSVCTVEAMPRETTASFVAIDEVQLAGDLERGHIFTDRLLHLRGRGETLLL 130
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G P+++ +L + V R+S L L + + IV FS +Y
Sbjct: 131 GAATMRPILEYLLP----GITVVERPRMSQL--LYAGSKKITRLPHRSAIVAFSADEVYA 184
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R + ++V G+L P TR Q + + + D LVA+DAIGMGLNL++ +
Sbjct: 185 IGELIR-RQRGGAAVVLGALSPRTRNAQVALYQEG--DVDYLVATDAIGMGLNLDVDHVA 241
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHK 365
F+ +KFDG + R+L E+ Q+AGRAGR+ G +D + L+H+
Sbjct: 242 FAQDRKFDGYQYRNLNPAELAQVAGRAGRHVRDGTFGVTGRVDPFEDELVHR 293
>gi|227823781|ref|YP_002827754.1| ATP-dependent DNA and RNA helicase protein [Sinorhizobium fredii
NGR234]
gi|227342783|gb|ACP27001.1| ATP-dependent DNA and RNA helicase protein [Sinorhizobium fredii
NGR234]
Length = 1008
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 102/305 (33%), Positives = 155/305 (50%), Gaps = 15/305 (4%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQ 134
R V +GPTN+GKTH A+ R+ + SG+ PLRLLA EV RL + + + LITG+
Sbjct: 13 RGVTAVLGPTNTGKTHYAIERMVAHDSGVIGLPLRLLAREVYTRLVEKVGHHNVALITGE 72
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLC 193
E+ A++ TVE + IDE+Q+ G RG FT LL + E L
Sbjct: 73 EKIAPHRARYSVCTVEAMPRETTASFVAIDEVQLAGDLERGHIFTDRLLHLRGRGETLLL 132
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G P+++ +L + V R+S L L + + IV FS +Y
Sbjct: 133 GAATMRPILEHLLP----GITVVERPRMSQL--LYAGSKKITRLPHRSAIVAFSADEVYA 186
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R + ++V G+L P TR Q + + + D LVA+DAIGMGLNL++ +
Sbjct: 187 IAELIR-RQRGGAAVVLGALSPRTRNAQVALYQEG--DVDYLVATDAIGMGLNLDVDHVA 243
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEP 370
F+ +KFDG + R+L E+ Q+AGRAGR+ G+ G V + E + + +P
Sbjct: 244 FAQDRKFDGYQYRNLNPAELAQVAGRAGRHVRDGTFGVTGRVDPFEDELVQRIESHEFDP 303
Query: 371 SPMLE 375
+L+
Sbjct: 304 VRVLQ 308
>gi|338981027|ref|ZP_08632266.1| Helicase domain-containing protein [Acidiphilium sp. PM]
gi|338208067|gb|EGO95963.1| Helicase domain-containing protein [Acidiphilium sp. PM]
Length = 502
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 141/265 (53%), Gaps = 16/265 (6%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ RL + SSGI PLRLLA E R+ K LITG+E+
Sbjct: 5 LGPTNTGKTHLAIERLLAHSSGIIGFPLRLLARENYDRMVAAKGARHVALITGEEKIVPA 64
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALL---GICANELHLCGDPA 197
A+ + TVE + + +DEIQ+ RG FT LL G+ E G
Sbjct: 65 EARWFSCTVEAMPLDRKVEFVAVDEIQLCADPDRGHVFTDRLLHARGMV--ETMFLG--- 119
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
I+++L+ + ++++ RLS L + S + IV FS +Y + +A
Sbjct: 120 -AETIRRLLRRLVPEAEIETRPRLSQLS--HAGPAKLSRLPPRSAIVAFSAAEVYAIAEA 176
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 317
+ +R + C++V G L P TR Q + + E D LVA+DAIGMGLN+++ + F+ +
Sbjct: 177 VRTR-RGGCAVVMGRLSPRTRNAQVALYQE--KEVDFLVATDAIGMGLNMDVDHVAFAGL 233
Query: 318 KKFDGVELRDLTVPEVKQIAGRAGR 342
KFDG R LT EV QIAGRAGR
Sbjct: 234 SKFDGHRPRLLTASEVAQIAGRAGR 258
>gi|209551388|ref|YP_002283305.1| helicase [Rhizobium leguminosarum bv. trifolii WSM2304]
gi|209537144|gb|ACI57079.1| helicase domain protein [Rhizobium leguminosarum bv. trifolii
WSM2304]
Length = 1087
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 148/290 (51%), Gaps = 19/290 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL----NKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV R+ NV+ L+T
Sbjct: 13 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGAQNVA--LVT 70
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ A+ TVE + IDE+Q+ G RG FT +L + E
Sbjct: 71 GEEKISPPNARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGREETL 130
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G P++QQ+L + + RLS L + + IV FS +
Sbjct: 131 LLGAATMQPILQQLLP----GITIVERPRLSHL--FYAGQKKITRLPQRSAIVAFSADEV 184
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++
Sbjct: 185 YAIAELIR-RQRGGAAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVDH 241
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ F+ +KFDG + R+L E+ QIAGRAGR+ G+ G+V+ D E
Sbjct: 242 VAFAQDRKFDGYQFRNLNPGELGQIAGRAGRHVRDGTFGVTGQVSPFDEE 291
>gi|398378112|ref|ZP_10536279.1| DNA/RNA helicase, superfamily II [Rhizobium sp. AP16]
gi|397725570|gb|EJK86019.1| DNA/RNA helicase, superfamily II [Rhizobium sp. AP16]
Length = 1044
Score = 139 bits (350), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 149/288 (51%), Gaps = 15/288 (5%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL-NKANV-SCDLITGQ 134
R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV R+ K V + L+TG+
Sbjct: 6 RGVTAVLGPTNTGKTHYAIERMVAHGNGVIGLPLRLLAREVYTRVVEKVGVQNVALVTGE 65
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLC 193
E+ A++ TVE + IDE+Q+ G RG FT +L + +E L
Sbjct: 66 EKISPPNARYSVCTVEAMPRETRASFVAIDEVQLAGDLERGHIFTDRILHLRGRDETLLL 125
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G P+++Q+L + V RLS L + + IV FS +Y
Sbjct: 126 GAGTMRPILEQLLP----GITVVERPRLSHL--FYAGQKKITRLPQRTAIVAFSADEVYA 179
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++ +
Sbjct: 180 IAELIR-RQRGGAAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVDHVA 236
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
F+ +KFDG + R+L E+ QIAGRAGR+ G+ G+V D E
Sbjct: 237 FAQDRKFDGYQFRNLNPGELGQIAGRAGRHLKDGTFGVTGQVDPFDDE 284
>gi|424886868|ref|ZP_18310476.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2012]
gi|393176219|gb|EJC76261.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM2012]
Length = 1104
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 148/290 (51%), Gaps = 19/290 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL----NKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV R+ NV+ L+T
Sbjct: 36 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGAQNVA--LVT 93
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ A+ TVE + IDE+Q+ G RG FT +L + E
Sbjct: 94 GEEKISPPNARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGREETL 153
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G P++QQ+L + V RLS L + + IV FS +
Sbjct: 154 LLGAGTMQPILQQLLP----GITVVERPRLSHL--FYAGQKKITRLPQHSAIVAFSADEV 207
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++
Sbjct: 208 YAIAELIR-RQRGGAAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVDH 264
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ F+ +KFDG + R+L E+ QIAGRAGR+ G+ G+V+ D E
Sbjct: 265 VAFAQDRKFDGYQFRNLNPGELGQIAGRAGRHVRDGTFGVTGQVSPFDEE 314
>gi|424916339|ref|ZP_18339703.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM597]
gi|392852515|gb|EJB05036.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
trifolii WSM597]
Length = 1110
Score = 139 bits (350), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 148/290 (51%), Gaps = 19/290 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL----NKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV R+ NV+ L+T
Sbjct: 36 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGAQNVA--LVT 93
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ A+ TVE + IDE+Q+ G RG FT +L + E
Sbjct: 94 GEEKISPPNARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGREETL 153
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G P++QQ+L + + RLS L + + IV FS +
Sbjct: 154 LLGAATMQPILQQLLP----GITIVERPRLSHL--FYAGQKKITRLPQRSAIVAFSADEV 207
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++
Sbjct: 208 YAIAELIR-RQRGGAAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVDH 264
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ F+ +KFDG + R+L E+ QIAGRAGR+ G+ G+V+ D E
Sbjct: 265 VAFAQDRKFDGYQFRNLNPGELGQIAGRAGRHVRDGTFGVTGQVSPFDEE 314
>gi|395785110|ref|ZP_10464844.1| hypothetical protein ME5_00162 [Bartonella tamiae Th239]
gi|423717989|ref|ZP_17692179.1| hypothetical protein MEG_01719 [Bartonella tamiae Th307]
gi|395425622|gb|EJF91783.1| hypothetical protein ME5_00162 [Bartonella tamiae Th239]
gi|395426422|gb|EJF92549.1| hypothetical protein MEG_01719 [Bartonella tamiae Th307]
Length = 967
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 104/290 (35%), Positives = 150/290 (51%), Gaps = 16/290 (5%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQ 134
R V +GPTN+GKTH A+ R+ + SG+ PLRLLA EV +R+ + L+TG+
Sbjct: 11 RDVTAVLGPTNTGKTHLAIERMLAYDSGLIGLPLRLLAREVYQRICEKIGAHRVSLVTGE 70
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI-CANELHLC 193
E+ A++ TVE + IDE+Q+ RG FT +L + +E L
Sbjct: 71 EKIIPPNARYSVCTVEALPRETKASFVAIDEVQLSDDLERGHIFTDRILHLRGQHETMLL 130
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G +Q ILQ + + + R S L + + + IV FS +Y
Sbjct: 131 G----AATMQGILQKLLPGLTIVTRPRFSHL--FYTGSKKITRLPSRSAIVAFSSEEVYS 184
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I+ R + ++V G+L P TR Q + S + D LVASDAIGMGLNL++ +
Sbjct: 185 IAEFIK-RQRGGAAVVMGALSPRTRNAQVALYQ--SGDVDYLVASDAIGMGLNLDVDHVA 241
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDL 360
F+ +KFDG + RDL E+ QIAGRAGRY G+ G V L+ EDL
Sbjct: 242 FAQTRKFDGYQFRDLKPAEMGQIAGRAGRYMRDGTFGVTGRVPPLE-EDL 290
>gi|222087733|ref|YP_002546270.1| ATP-dependent DNA helicase [Agrobacterium radiobacter K84]
gi|221725181|gb|ACM28337.1| ATP-dependent DNA helicase protein [Agrobacterium radiobacter K84]
Length = 1057
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 101/288 (35%), Positives = 149/288 (51%), Gaps = 15/288 (5%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL-NKANV-SCDLITGQ 134
R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV R+ K V + L+TG+
Sbjct: 17 RGVTAVLGPTNTGKTHYAIERMVAHGNGVIGLPLRLLAREVYTRVVEKVGVQNVALVTGE 76
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLC 193
E+ A++ TVE + IDE+Q+ G RG FT +L + +E L
Sbjct: 77 EKISPPNARYSVCTVEAMPRETRASFVAIDEVQLAGDLERGHIFTDRILHLRGRDETLLL 136
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G P+++Q+L + V RLS L + + IV FS +Y
Sbjct: 137 GAGTMRPILEQLLP----GITVVERPRLSHL--FYAGQKKITRLPQRTAIVAFSADEVYA 190
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++ +
Sbjct: 191 IAELIR-RQRGGAAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVDHVA 247
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
F+ +KFDG + R+L E+ QIAGRAGR+ G+ G+V D E
Sbjct: 248 FAQDRKFDGYQFRNLNPGELGQIAGRAGRHLKDGTFGVTGQVDPFDDE 295
>gi|148556442|ref|YP_001264024.1| helicase domain-containing protein [Sphingomonas wittichii RW1]
gi|148501632|gb|ABQ69886.1| helicase domain protein [Sphingomonas wittichii RW1]
Length = 865
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 107/329 (32%), Positives = 158/329 (48%), Gaps = 40/329 (12%)
Query: 79 VILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQER 136
V+ +GPTN+GKTH A+ R+ SSG+ PLRLLA EV R+ K LITG+E+
Sbjct: 9 VVAVLGPTNTGKTHLAIERMCGHSSGMIGFPLRLLAREVYDRVVAIKGKERVALITGEEK 68
Query: 137 EEVDGAKHRAVTVEMADVV------------SDYDCAVIDEIQMLGCKTRGFSFT-RALL 183
A++ T E + DY +DE Q+ RG FT R L
Sbjct: 69 LIPPNAQYFLTTAESMPISPGLLAGGDKQGDRDYAFVALDEAQLGADPERGHVFTDRLLR 128
Query: 184 GICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCI 243
E + G A P+I+ ++ D ++ R S L S + I
Sbjct: 129 ARGREETMILGSEALRPMIRALVP----DAEIIGRPRFSTLTYAGAT--KLSRLPPRSAI 182
Query: 244 VTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGM 303
V FS +Y + + + R + ++V G+L P TR Q F + E D LVA+DAIGM
Sbjct: 183 VAFSAEEVYAVAEMLR-RLRGGAAVVMGALSPRTRNAQVGMFQ--AGEVDYLVATDAIGM 239
Query: 304 GLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---------------GSKFP 348
GLN++++ + F++++KFDG R LT+ E+ QIAGRAGR+ G++F
Sbjct: 240 GLNMDVAHVAFASLRKFDGRRARRLTIAEMAQIAGRAGRHQRDGTFGTLALEGGSGARFE 299
Query: 349 VGEVTCLDSEDLPLL-HKSLLEPSPMLES 376
EV +++ P + H E +P L S
Sbjct: 300 DEEVDAIEAHHFPPIDHLYWREGAPSLAS 328
>gi|114800036|ref|YP_762088.1| putative helicase [Hyphomonas neptunium ATCC 15444]
gi|114740210|gb|ABI78335.1| putative helicase [Hyphomonas neptunium ATCC 15444]
Length = 957
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 103/278 (37%), Positives = 143/278 (51%), Gaps = 14/278 (5%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQE 135
K IL GPTN+GKTH A+ R+ +G+ PLRLLA EV R+ K S LITG+E
Sbjct: 5 KAIL--GPTNTGKTHYAIERMLGHGTGMIGLPLRLLAREVYDRVVAAKGYASAALITGEE 62
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCG 194
R A++ TVE D IDEIQ+ RG FT +L + N E L G
Sbjct: 63 RISPPTARYFICTVESMPTDIRPDFLAIDEIQLAEDDDRGHVFTDRILNMRGNHETLLLG 122
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
++ +L+ V+ + ER S L + + IV FS +Y +
Sbjct: 123 ----ADTMRGLLRELKLGVETEPRERFSEL--RYTGHTKITKLPKRTAIVGFSAEEVYAI 176
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ + R K ++V G+L P TR Q + S E D +VA+DAIGMGLNL++ R++F
Sbjct: 177 AELLR-RQKGGAAVVMGALSPRTRNAQVALYQ--SGEVDYIVATDAIGMGLNLDVERVVF 233
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV 352
++ KFDG R L++ E QIAGRAGR+ + GE
Sbjct: 234 ASRSKFDGRRHRPLSLAECGQIAGRAGRFRTDGEFGET 271
>gi|402580579|gb|EJW74529.1| hypothetical protein WUBG_14562, partial [Wuchereria bancrofti]
Length = 213
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 75/187 (40%), Positives = 114/187 (60%), Gaps = 5/187 (2%)
Query: 267 SIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELR 326
+++YG+LPP T+ QA FN+ S + +V+VA+DA+GMGLNLNI RIIF +F E +
Sbjct: 17 TVIYGALPPWTKLNQAKTFNEMSRKPNVMVATDAVGMGLNLNIRRIIFV---QFPFGEHQ 73
Query: 327 DLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI 386
V Q+AGRAGR+ S + G VT L D+ LL + EP +E+AG+ P + +
Sbjct: 74 --ANYHVMQVAGRAGRFQSAYQKGWVTTLRPADMRLLEAFMKEPIKPIETAGIAPTSEQL 131
Query: 387 YMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCIS 446
+S P +S I++ F+ + LS+ + + E+ K+A +ID +PL + KY FC +
Sbjct: 132 ETFSYHLPHASFLSIIDMFISISSLSKKFHLCDIEQFRKLAELIDDVPLSIKVKYAFCTA 191
Query: 447 PVDMNDD 453
PVDM+ D
Sbjct: 192 PVDMDVD 198
>gi|119384565|ref|YP_915621.1| helicase [Paracoccus denitrificans PD1222]
gi|119374332|gb|ABL69925.1| helicase domain protein [Paracoccus denitrificans PD1222]
Length = 975
Score = 139 bits (349), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 103/270 (38%), Positives = 139/270 (51%), Gaps = 15/270 (5%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC--DLITGQE 135
+V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV R+ KA L+TG+E
Sbjct: 6 RVTAVLGPTNTGKTHYAIDRMLAHRTGVIGLPLRLLAREVYDRIVKARGPSVVALVTGEE 65
Query: 136 REEVDGAKHRAVTVE-MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLC 193
R + ++ T E M +V +D+ IDEIQ+ RG FT LL + +E L
Sbjct: 66 RIVPERVQYWVATTEAMPEVGADF--VAIDEIQLCADPERGHVFTDRLLNMRGLHETLLL 123
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G P I ++ V+ ER S L S + IV FS +Y
Sbjct: 124 GSDTMRPAIAALVP----QVQFMRRERFSTLSWAGSK--KISRMPPRSAIVCFSVEEVYA 177
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ I R K C++V G+L P TR Q + E D LVA+DAIGMGLNL+I +
Sbjct: 178 TAELIR-RQKGGCAVVMGALSPRTRNAQVAMYQ--QGEVDYLVATDAIGMGLNLDIRHVA 234
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
FS +KFDG R L E+ QIAGRAGR+
Sbjct: 235 FSATEKFDGRRYRPLFPHELGQIAGRAGRH 264
>gi|407778467|ref|ZP_11125731.1| helicase-like protein [Nitratireductor pacificus pht-3B]
gi|407299838|gb|EKF18966.1| helicase-like protein [Nitratireductor pacificus pht-3B]
Length = 1028
Score = 139 bits (349), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 98/272 (36%), Positives = 145/272 (53%), Gaps = 16/272 (5%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ + SG+ PLRLLA EV A ++ + NV+ LIT
Sbjct: 16 RDVTAILGPTNTGKTHLAIERMVAHQSGVIGLPLRLLAREVYGRVAAKVGEQNVA--LIT 73
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ GA++ TVE +D IDE+Q+ RG FT +L + E
Sbjct: 74 GEEKISPPGARYSVCTVEAMPRETDAAFVAIDEVQLAADLERGHIFTDRILHLRGRQETL 133
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +++++L + V + R+S L + + IV FS +
Sbjct: 134 LLGAGTMRGILERLLP----GLSVITRPRMSVLTYAGSR--KITRLPRRSAIVAFSSDEV 187
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 188 YAIGELIR-RQRGGVAVVLGALSPRTRNAQVALYQ--SGDVDYLVATDAIGMGLNLDVDH 244
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
+ F+ +KFDG + RDL E+ QIAGRAGR+
Sbjct: 245 VAFAQNRKFDGFQYRDLNPAELGQIAGRAGRH 276
>gi|430005521|emb|CCF21322.1| putative ATP-dependent DNA helicase protein [Rhizobium sp.]
Length = 1003
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 148/288 (51%), Gaps = 15/288 (5%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQ 134
R V +GPTN+GKTH A+ R+ + SG+ PLRLLA EV R+ + + L+TG+
Sbjct: 11 RGVTAVLGPTNTGKTHYAIERMVAHGSGVIGLPLRLLAREVYTRVVEKVGTNAVALVTGE 70
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLC 193
E+ A+ TVE ++ IDE+Q+ RG FT +L + E L
Sbjct: 71 EKISPSNARFSVCTVEAMPRETNAAFVAIDEVQLAADLERGHIFTDRILHLRGREETLLL 130
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G P++++IL + + R+S L + + IV FS +Y
Sbjct: 131 GAGTMRPILERILP----GITIVERPRMSQL--FYAGQKKITRLPQRSAIVAFSADEVYA 184
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R + ++V G+L P TR Q + + E+ LVA+DAIGMGLNL++ +
Sbjct: 185 IAELIR-RQRGGAAVVLGALSPRTRNAQVGLYQEGDVEY--LVATDAIGMGLNLDVDHVA 241
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
F+ +KFDG + R LT E+ QIAGRAGR+ G+ G+V LD E
Sbjct: 242 FAQDRKFDGFQFRHLTPGEMGQIAGRAGRHLRDGTFGVTGQVPPLDDE 289
>gi|418063152|ref|ZP_12700866.1| helicase domain-containing protein, partial [Methylobacterium
extorquens DSM 13060]
gi|373561366|gb|EHP87602.1| helicase domain-containing protein, partial [Methylobacterium
extorquens DSM 13060]
Length = 837
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 105/309 (33%), Positives = 152/309 (49%), Gaps = 19/309 (6%)
Query: 75 KVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDL 130
+ R V +GPTN+GKTH A+ R+ +G+ PLRLLA EV ++ NV+ L
Sbjct: 11 RARGVTAVLGPTNTGKTHMAIERMLLHPTGMIGLPLRLLAREVYLRVVAKVGSENVA--L 68
Query: 131 ITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANE 189
ITG+E+ + D ++ T+E D IDEIQ+ RG FT R L E
Sbjct: 69 ITGEEKIKPDRPRYWICTIEAMPRDLDVAFVAIDEIQLAADMDRGHVFTDRLLYRRGREE 128
Query: 190 LHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRH 249
L G +PL+Q ++ V+ + RLS L S + IV FS
Sbjct: 129 TLLIGSSTMLPLVQALIP----GVQTTTRPRLSSLTFAGEK--KISRLPHRTAIVAFSAE 182
Query: 250 AIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNI 309
+Y + + I R + ++V G+L P TR Q + S + D LVA+DA+GMGLNL++
Sbjct: 183 EVYAIAELIR-RQRGGAAVVLGALSPRTRNAQVELYQ--SGDVDYLVATDAVGMGLNLDV 239
Query: 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKS 366
+ F+ K+DG R L+ E+ QIAGRAGR+ G+ G + E + L
Sbjct: 240 DHVAFAANWKYDGTRFRKLSPAEMGQIAGRAGRHIADGTFGSTGRCPPFEPEMVEALETH 299
Query: 367 LLEPSPMLE 375
EP ML+
Sbjct: 300 DFEPVRMLQ 308
>gi|83859716|ref|ZP_00953236.1| ATP-dependent DNA helicase [Oceanicaulis sp. HTCC2633]
gi|83852075|gb|EAP89929.1| ATP-dependent DNA helicase [Oceanicaulis sp. HTCC2633]
Length = 937
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 96/285 (33%), Positives = 145/285 (50%), Gaps = 12/285 (4%)
Query: 72 ARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN--VSCD 129
AR ++ +GPTN+GKTH AL R+ + +G++ PLRLLA E+ ++ KA S
Sbjct: 4 ARAGDHRIAAILGPTNTGKTHLALERMMAHGTGVFGLPLRLLARELYDKVVKAKGPASVA 63
Query: 130 LITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICAN 188
LITG+E+ A++ TVE + +DEIQ+ RG FT R L
Sbjct: 64 LITGEEKIVPPTARYFLCTVEAMPLNMRPAFLAVDEIQLAADPERGHIFTDRLLHARGTQ 123
Query: 189 ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSR 248
E G P+++ ++ + +++ ER S L + + IV FS
Sbjct: 124 ETLFLGAATMRPILRHLIP----EAEIEERERFSTLSYAGA--KKLTKLPRRSAIVAFSS 177
Query: 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308
+Y + + + R + ++V G+L P TR Q + S E D L+A+DAIGMGLN++
Sbjct: 178 EDVYSIAELVR-RQRGGAAVVMGALSPRTRNAQVELYQ--SGEVDFLIATDAIGMGLNMD 234
Query: 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
+ + F++ KFDG + R L EV QIAGRAGR+ S GE
Sbjct: 235 VDHVAFASYSKFDGRKRRRLFPQEVGQIAGRAGRFRSDGTFGETA 279
>gi|418297917|ref|ZP_12909757.1| ATP-dependent helicase [Agrobacterium tumefaciens CCNWGS0286]
gi|355537287|gb|EHH06547.1| ATP-dependent helicase [Agrobacterium tumefaciens CCNWGS0286]
Length = 1026
Score = 138 bits (348), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 147/290 (50%), Gaps = 19/290 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL----NKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ + SG+ PLRLLA EV RL NV+ LIT
Sbjct: 6 RGVTAVLGPTNTGKTHYAIERMVAHGSGVIGLPLRLLAREVYTRLVEKVGAPNVA--LIT 63
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ AK+ TVE + IDE+Q+ G RG FT +L + E
Sbjct: 64 GEEKISPPKAKYSVCTVEAMPRETTAAFVAIDEVQLAGDLERGHIFTDRVLHLRGREETL 123
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G P+++++L + V RLS L + + IV FS +
Sbjct: 124 LLGAGTMRPILEKLLP----GITVVERPRLSQL--FYAGQKKITRLPQRTAIVAFSADEV 177
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + + R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++
Sbjct: 178 YAIAELVR-RQRGGAAVVLGALSPRTRNAQVGLYQSGDVEY--LVATDAIGMGLNLDVDH 234
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ F+ +KFDG + R+L E+ QIAGRAGR+ G+ G V D E
Sbjct: 235 VAFAQDRKFDGYQFRNLNPGEIGQIAGRAGRHLRDGTFGVTGRVDPFDDE 284
>gi|241206830|ref|YP_002977926.1| helicase domain-containing protein [Rhizobium leguminosarum bv.
trifolii WSM1325]
gi|240860720|gb|ACS58387.1| helicase domain protein [Rhizobium leguminosarum bv. trifolii
WSM1325]
Length = 1082
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 148/290 (51%), Gaps = 19/290 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL----NKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV R+ NV+ L+T
Sbjct: 13 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGAQNVA--LVT 70
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ A+ TVE + IDE+Q+ G RG FT +L + E
Sbjct: 71 GEEKISPPNARFSVCTVEAMPRETRAAFVAIDEVQLAGDLERGHIFTDRILHLRGREETL 130
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G P++QQ+L + + RLS L + + IV FS +
Sbjct: 131 LLGAATMRPILQQLLP----GITIVERPRLSHL--FYAGQKKITRLPQRSAIVAFSADEV 184
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++
Sbjct: 185 YAIAELIR-RQRGGAAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVDH 241
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ F+ +KFDG + R+L E+ Q+AGRAGR+ G+ G+V+ D E
Sbjct: 242 VAFAQDRKFDGYQFRNLNPGELGQVAGRAGRHVRDGTFGVTGQVSPFDDE 291
>gi|417858292|ref|ZP_12503349.1| ATP-dependent helicase [Agrobacterium tumefaciens F2]
gi|338824296|gb|EGP58263.1| ATP-dependent helicase [Agrobacterium tumefaciens F2]
Length = 1017
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 147/290 (50%), Gaps = 19/290 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL----NKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ + SG+ PLRLLA EV RL NV+ LIT
Sbjct: 6 RGVTAVLGPTNTGKTHYAIERMVAHGSGVIGLPLRLLAREVYTRLVEKVGAPNVA--LIT 63
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ AK+ TVE + IDE+Q+ G RG FT +L + E
Sbjct: 64 GEEKISPPKAKYSVCTVEAMPRETTAAFVAIDEVQLAGDLERGHIFTDRVLHLRGREETL 123
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G P+++++L + V RLS L + + IV FS +
Sbjct: 124 LLGAGTMRPILEKLLP----GITVVERPRLSQL--FYAGQKKITRLPQRTAIVAFSADEV 177
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + + R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++
Sbjct: 178 YAIAELVR-RQRGGAAVVLGALSPRTRNAQVGLYQSGDVEY--LVATDAIGMGLNLDVDH 234
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ F+ +KFDG + R+L E+ QIAGRAGR+ G+ G V D E
Sbjct: 235 VAFAQDRKFDGYQFRNLNPGEIGQIAGRAGRHLRDGTFGVTGRVDPFDDE 284
>gi|452751628|ref|ZP_21951373.1| ATP-dependent DNA helicase [alpha proteobacterium JLT2015]
gi|451960847|gb|EMD83258.1| ATP-dependent DNA helicase [alpha proteobacterium JLT2015]
Length = 914
Score = 138 bits (347), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 97/264 (36%), Positives = 136/264 (51%), Gaps = 12/264 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQEREEVD 140
+GPTN+GKTH A++R+ +SG+ PLRLLA EV R+ K L+TG+E+ +
Sbjct: 80 LGPTNTGKTHLAVTRMCGHASGMMGFPLRLLAREVYDRVVAIKGAPQVALVTGEEKIVPE 139
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAV 199
GA++ T E + +DEIQ+ RG FT LL E L G
Sbjct: 140 GARYWLCTAEAMPADLHPEFLALDEIQLAADPERGHVFTDRLLHRRGTAETMLLGAATMA 199
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
PLI+++L D ++ R S L S + ++ FS +Y L + +
Sbjct: 200 PLIRRLL----PDAYIEERPRFSTLSYAGPK--KLSRLPRRAALIAFSADEVYGLAEMLR 253
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R K ++V G+L P TR Q + S E D LVA+DAIGMGLN++I + F+ + K
Sbjct: 254 -RQKGGAAVVMGALSPRTRNAQVELYQ--SGEVDYLVATDAIGMGLNMDIDHVAFAALSK 310
Query: 320 FDGVELRDLTVPEVKQIAGRAGRY 343
FDG R L E+ QIAGRAGRY
Sbjct: 311 FDGQRQRRLMPAELGQIAGRAGRY 334
>gi|220921713|ref|YP_002497014.1| helicase domain-containing protein [Methylobacterium nodulans ORS
2060]
gi|219946319|gb|ACL56711.1| helicase domain protein [Methylobacterium nodulans ORS 2060]
Length = 1135
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 105/325 (32%), Positives = 159/325 (48%), Gaps = 31/325 (9%)
Query: 75 KVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLIT 132
+ R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV R+ + L+T
Sbjct: 20 RARGVTAVLGPTNTGKTHLAIERMLAHPTGMIGLPLRLLAREVYHRVVDRVGSERVALVT 79
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ + D + T E D +DE+Q+ RG +FT LL E
Sbjct: 80 GEEKIKPDRPSYWICTAEAMPRDRSVDFVAVDEVQLGADMDRGHTFTDRLLHQRGREETL 139
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF------SNIQTGDCIVT 245
L G PL+Q ++ V + + RLS L SF S + +V
Sbjct: 140 LIGSATIAPLVQALIP----GVHITTRPRLSRL--------SFAGEKRISRLPHRTAVVA 187
Query: 246 FSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGL 305
FS +Y + + + R + ++V G+L P TR Q + S + D LVA+DA+GMGL
Sbjct: 188 FSAEEVYAIAELLR-RQRGGAAVVLGALSPRTRNAQVELYQ--SGDVDYLVATDAVGMGL 244
Query: 306 NLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPL 362
NL++ + F++ +KFDG R LT E+ QIAGRAGR+ G+ G + E +
Sbjct: 245 NLDVDHVAFASNRKFDGTRFRGLTPAEMAQIAGRAGRHLRDGTFGSTGRCPPFEPEMVEA 304
Query: 363 LHKSLLEPSPMLESAGLFPNFDLIY 387
L EP+ +L+ + N DL +
Sbjct: 305 LESHSFEPTRLLQ----WRNPDLDF 325
>gi|408786434|ref|ZP_11198171.1| ATP-dependent helicase [Rhizobium lupini HPC(L)]
gi|408487806|gb|EKJ96123.1| ATP-dependent helicase [Rhizobium lupini HPC(L)]
Length = 1027
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 147/290 (50%), Gaps = 19/290 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL----NKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ + SG+ PLRLLA EV RL NV+ LIT
Sbjct: 6 RGVTAVLGPTNTGKTHYAIERMVAHGSGVIGLPLRLLAREVYTRLVEKVGAPNVA--LIT 63
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ AK+ TVE + IDE+Q+ G RG FT +L + E
Sbjct: 64 GEEKISPPKAKYSVCTVEAMPRETTAAFVAIDEVQLAGDLERGHIFTDRVLHLRGREETL 123
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G P+++++L + V RLS L + + IV FS +
Sbjct: 124 LLGAGTMRPILEKLLP----GITVVERPRLSQL--FYAGQKKITRLPQRTAIVAFSADEV 177
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + + R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++
Sbjct: 178 YAIAELVR-RQRGGAAVVLGALSPRTRNAQVGLYQSGDVEY--LVATDAIGMGLNLDVDH 234
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ F+ +KFDG + R+L E+ QIAGRAGR+ G+ G V D E
Sbjct: 235 VAFAQDRKFDGYQFRNLNPGEIGQIAGRAGRHLRDGTFGVTGRVDPFDDE 284
>gi|424911485|ref|ZP_18334862.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae USDA 2370]
gi|392847516|gb|EJB00039.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae USDA 2370]
Length = 1027
Score = 138 bits (347), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 147/290 (50%), Gaps = 19/290 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL----NKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ + SG+ PLRLLA EV RL NV+ LIT
Sbjct: 6 RGVTAVLGPTNTGKTHYAIERMVAHGSGVIGLPLRLLAREVYTRLVEKVGAPNVA--LIT 63
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ AK+ TVE + IDE+Q+ G RG FT +L + E
Sbjct: 64 GEEKISPPKAKYSVCTVEAMPRETTAAFVAIDEVQLAGDLERGHIFTDRVLHLRGREETL 123
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G P+++++L + V RLS L + + IV FS +
Sbjct: 124 LLGAGTMRPILEKLLP----GITVVERPRLSQL--FYAGQKKITRLPQRTAIVAFSADEV 177
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + + R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++
Sbjct: 178 YAIAELVR-RQRGGAAVVLGALSPRTRNAQVGLYQSGDVEY--LVATDAIGMGLNLDVDH 234
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ F+ +KFDG + R+L E+ QIAGRAGR+ G+ G V D E
Sbjct: 235 VAFAQDRKFDGYQFRNLNPGEIGQIAGRAGRHLRDGTFGVTGRVDPFDDE 284
>gi|116254344|ref|YP_770182.1| hypothetical protein RL4618 [Rhizobium leguminosarum bv. viciae
3841]
gi|115258992|emb|CAK10101.1| conserved hypothetical protein [Rhizobium leguminosarum bv. viciae
3841]
Length = 1090
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 148/290 (51%), Gaps = 19/290 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL----NKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV R+ NV+ L+T
Sbjct: 13 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGAHNVA--LVT 70
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ A+ TVE + IDE+Q+ G RG FT +L + E
Sbjct: 71 GEEKISPPNARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGREETL 130
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G P++QQ+L + + RLS L + + IV FS +
Sbjct: 131 LLGAATMRPILQQLLP----GITIVERPRLSHL--FYAGQKKITRLPQRSAIVAFSADEV 184
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++
Sbjct: 185 YAIAELIR-RQRGGAAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVDH 241
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ F+ +KFDG + R+L E+ Q+AGRAGR+ G+ G+V+ D E
Sbjct: 242 VAFAQDRKFDGYQFRNLNPGELGQVAGRAGRHVRDGTFGVTGQVSPFDDE 291
>gi|390448930|ref|ZP_10234544.1| helicase-like protein [Nitratireductor aquibiodomus RA22]
gi|389665245|gb|EIM76719.1| helicase-like protein [Nitratireductor aquibiodomus RA22]
Length = 1006
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 138/269 (51%), Gaps = 10/269 (3%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQ 134
R V +GPTN+GKTH A+ R+ + SSGI PLRLLA EV R+ LITG+
Sbjct: 16 RNVTAILGPTNTGKTHLAIERMVAHSSGIIGLPLRLLAREVYSRVVAKVGEQHVALITGE 75
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCG 194
E+ GA+ TVE +D IDE+Q+ RG FT +L + E L
Sbjct: 76 EKIAPPGARFSVCTVEAMPREADVAFVAIDEVQLAADLERGHIFTDRILHLRGREETLL- 134
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
++ IL+ + V + R+S L + + IV FS +Y +
Sbjct: 135 --LGAGTMRGILEKLLPGLSVITRPRMSVLTYSGS--RKITRLPRRSAIVAFSSDEVYAI 190
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++ + F
Sbjct: 191 GELIR-RQRGGVAVVLGALSPRTRNAQVALYQ--SGDVDYLVATDAIGMGLNLDVDHVAF 247
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY 343
+ +KFDG + RDL E+ QIAGRAGR+
Sbjct: 248 AQNRKFDGFQYRDLNPAELGQIAGRAGRH 276
>gi|150398309|ref|YP_001328776.1| helicase domain-containing protein [Sinorhizobium medicae WSM419]
gi|150029824|gb|ABR61941.1| helicase domain protein [Sinorhizobium medicae WSM419]
Length = 1026
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/292 (33%), Positives = 149/292 (51%), Gaps = 12/292 (4%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQ 134
R V +GPTN+GKTH A+ R+ + SG+ PLRLLA EV RL + + + LITG+
Sbjct: 11 RGVTAVLGPTNTGKTHYAIERMVAHDSGVIGLPLRLLAREVYTRLVEKVGHHNVALITGE 70
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLC 193
E+ A++ TVE + IDE+Q+ G RG FT +L + E
Sbjct: 71 EKIAPHRARYSVCTVEAMPRETTASFVAIDEVQLAGDLERGHIFTDRVLHLRGRGETLFL 130
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G P+++ +L + V R+S L L + + IV FS +Y
Sbjct: 131 GAATMRPILEYLLP----GITVVERPRMSQL--LYAGSKKITRLPNRSAIVAFSADEVYA 184
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R + ++V G+L P TR Q + + + D LVA+DAIGMGLNL++ +
Sbjct: 185 IAELIR-RQRGGAAVVLGALSPRTRNAQVALYQEG--DVDYLVATDAIGMGLNLDVDHVA 241
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHK 365
F+ +KFDG + R+L E+ Q+AGRAGR+ G +D + L+H+
Sbjct: 242 FAQDRKFDGYQYRNLNPAELAQVAGRAGRHVRDGTFGVTGRVDPFEEELVHR 293
>gi|240141242|ref|YP_002965722.1| hypothetical protein MexAM1_META1p4834 [Methylobacterium extorquens
AM1]
gi|240011219|gb|ACS42445.1| conserved hypothetical protein with putative ATP-dependent RNA and
DNA helicase (N-terminal) and conserved C-terminal
DEAD/DEAH box domain protein (C-terminal)
[Methylobacterium extorquens AM1]
Length = 1131
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 110/323 (34%), Positives = 161/323 (49%), Gaps = 27/323 (8%)
Query: 75 KVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDL 130
+ R V +GPTN+GKTH A+ R+ +G+ PLRLLA EV ++ NV+ L
Sbjct: 11 RARGVTAVLGPTNTGKTHMAIERMLLHPTGMIGLPLRLLAREVYLRVVAKVGSENVA--L 68
Query: 131 ITGQEREEVDGAKHRAVTVEMADVVSDYDCA--VIDEIQMLGCKTRGFSFT-RALLGICA 187
ITG+E+ + D ++ T+E + D+D A IDEIQ+ RG FT R L
Sbjct: 69 ITGEEKIKPDRPRYWICTIEA--MPRDFDVAFVAIDEIQLAADMDRGHVFTDRLLYRRGR 126
Query: 188 NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFS 247
E L G +PL+Q ++ V+ + RLS L S + IV FS
Sbjct: 127 EETLLIGSSTMLPLVQALIP----GVQTTTRPRLSSLTFAGEK--KISRLPHRTAIVAFS 180
Query: 248 RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307
+Y + + I R + ++V G+L P TR Q + S + D LVA+DA+GMGLNL
Sbjct: 181 AEEVYAIAELIR-RQRGGAAVVLGALSPRTRNAQVELYQ--SGDVDYLVATDAVGMGLNL 237
Query: 308 NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLH 364
++ + F+ K+DG R L+ E+ QIAGRAGR+ G+ G + E + L
Sbjct: 238 DVDHVAFAANWKYDGTRFRKLSPAEMGQIAGRAGRHIADGTFGSTGRCPPFEPEMVEALE 297
Query: 365 KSLLEPSPMLESAGLFPNFDLIY 387
EP ML+ + N DL +
Sbjct: 298 THDFEPVRMLQ----WRNPDLEF 316
>gi|329849614|ref|ZP_08264460.1| mgpS [Asticcacaulis biprosthecum C19]
gi|328841525|gb|EGF91095.1| mgpS [Asticcacaulis biprosthecum C19]
Length = 976
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 142/282 (50%), Gaps = 15/282 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ ++G+ PLRLLA E+ R+ K + L+TG+E+
Sbjct: 27 LGPTNTGKTHYAIERMCGYATGMMGLPLRLLAREIYDRVVALKGVNAVALVTGEEKIIPR 86
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAV 199
+ TVE + D +DEIQ+ G RG FT LL E G
Sbjct: 87 LPSYFICTVEAMPLERQVDFLAVDEIQLCGDTERGHVFTDRLLHARGRFETLFLGANTFA 146
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
PL ++ ++ ERLS L + + IV FS +Y + + I
Sbjct: 147 PLFHRLFPA----AEIIRRERLSSLTYAGS--KKLTRLPKRTAIVAFSTEKVYAIAELIR 200
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R + ++V GSL P+TR Q F E D LVA+DAIGMGLN++I+ + FS + K
Sbjct: 201 -RQRGGAAVVMGSLSPKTRNAQVELFQ--KGEVDFLVATDAIGMGLNMDIAHVAFSGLSK 257
Query: 320 FDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
FDG +R LT E+ QIAGRAGR+ G+ GE LD +
Sbjct: 258 FDGKNVRHLTAQEIGQIAGRAGRHMNDGTFGVTGECHELDDD 299
>gi|126729322|ref|ZP_01745136.1| helicase, putative [Sagittula stellata E-37]
gi|126710312|gb|EBA09364.1| helicase, putative [Sagittula stellata E-37]
Length = 995
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 109/285 (38%), Positives = 146/285 (51%), Gaps = 18/285 (6%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN--VSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ + SG+ PLRLLA EV R+ A L+TG+ER
Sbjct: 11 LGPTNTGKTHYAIERMLAYRSGVIGLPLRLLAREVYDRIVAARGPSVVALVTGEERIVPA 70
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE--LHLCGDPAA 198
A++ TVE D IDEIQ+ RG FT LL + L L D
Sbjct: 71 RAQYWVCTVEAMPEGMGADLVAIDEIQLCADPERGHVFTDRLLRMRGTHETLFLGSDTMR 130
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
P+ Q + V+ ER+S LV S +Q IV FS +Y + + +
Sbjct: 131 GPIAQLV-----PGVEFVRRERMSQLVYTGSK--KISRLQPRTAIVGFSVDNVYAIAELL 183
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
+ R K ++V G+L P TR Q + + E D LVA+DAIGMGLNL+I + FS+
Sbjct: 184 K-RQKGGAAVVMGALSPRTRNAQVELYQN--REVDYLVATDAIGMGLNLDIDHVAFSSTT 240
Query: 319 KFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDL 360
KFDG +R L E+ QIAGRAGR G+ GE + L SED+
Sbjct: 241 KFDGRRMRPLMPNELAQIAGRAGRGMSDGTFGVTGEASPL-SEDV 284
>gi|159185362|ref|NP_355683.2| ATP-dependent helicase [Agrobacterium fabrum str. C58]
gi|159140613|gb|AAK88468.2| ATP-dependent helicase [Agrobacterium fabrum str. C58]
Length = 1032
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 147/290 (50%), Gaps = 19/290 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL----NKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV RL NV+ LIT
Sbjct: 6 RGVTAVLGPTNTGKTHYAIERMVAHGNGVIGLPLRLLAREVYTRLVEKVGAPNVA--LIT 63
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ AK+ TVE + IDE+Q+ G RG FT +L + E
Sbjct: 64 GEEKISPPKAKYSVCTVEAMPRETTAAFVAIDEVQLAGDLERGHIFTDRVLHLRGREETL 123
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G P+++++L + V RLS L + + IV FS +
Sbjct: 124 LLGAGTMRPILEKLLP----GITVVERPRLSQL--FYAGQKKITRLPQRTAIVAFSAEEV 177
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + + R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++
Sbjct: 178 YAIAELVR-RQRGGAAVVMGALSPRTRNAQVGLYQSGDVEY--LVATDAIGMGLNLDVDH 234
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ F+ +KFDG + R+L E+ QIAGRAGR+ G+ G V D E
Sbjct: 235 VAFAQDRKFDGYQFRNLNPGEIGQIAGRAGRHLRDGTFGVTGRVDPFDDE 284
>gi|424872858|ref|ZP_18296520.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae WSM1455]
gi|393168559|gb|EJC68606.1| DNA/RNA helicase, superfamily II [Rhizobium leguminosarum bv.
viciae WSM1455]
Length = 1082
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/290 (34%), Positives = 148/290 (51%), Gaps = 19/290 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL----NKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV R+ NV+ L+T
Sbjct: 13 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGAHNVA--LVT 70
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ A+ TVE + IDE+Q+ G RG FT +L + E
Sbjct: 71 GEEKISPPNARFSVCTVEAMPRETRAAFVAIDEVQLAGDLERGHIFTDRILHLRGREETL 130
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G P++QQ+L + + RLS L + + IV FS +
Sbjct: 131 LLGAATMRPILQQLLP----GITIVERPRLSHL--FYAGQKKITRLPQRSAIVAFSADEV 184
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++
Sbjct: 185 YAIAELIR-RQRGGAAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVDH 241
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ F+ +KFDG + R+L E+ Q+AGRAGR+ G+ G+V+ D E
Sbjct: 242 VAFAQDRKFDGYQFRNLNPGELGQVAGRAGRHVRDGTFGVTGQVSPFDDE 291
>gi|404251913|ref|ZP_10955881.1| helicase domain-containing protein, partial [Sphingomonas sp. PAMC
26621]
Length = 765
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 120/366 (32%), Positives = 169/366 (46%), Gaps = 36/366 (9%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK---ANVSCDLITGQEREEV 139
+GPTN+GKTH A+ R+ SSG+ PLRLLA EV R+ K AN LITG+E+
Sbjct: 13 LGPTNTGKTHLAVERMCGHSSGMIGFPLRLLAREVYDRVVKIKGAN-RVALITGEEKIVP 71
Query: 140 DGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAA 198
A+ T E V D +DE Q+ RG FT R L E L G A
Sbjct: 72 KDARWFLCTAESMPVDRDLAFVAVDEAQLGADMERGHVFTDRILRARGREETMLLGSEAL 131
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
P+++ ++ +++ + R S L S + IV FS +Y + + +
Sbjct: 132 RPMVKALVP----GIEIINRPRFSTLSYAGAK--KISRLPKRSAIVAFSAEEVYAVAEML 185
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
R + ++V G+L P TR Q F + E D LVA+DAIGMGLN++++ + F+++
Sbjct: 186 R-RLRGGAAVVMGALSPRTRNAQVAMFQ--AGEVDYLVATDAIGMGLNMDVTHVAFASLN 242
Query: 319 KFDGVELRDLTVPEVKQIAGRAGRYG-------------SKFPVGEVTCLDSEDL-PLLH 364
KFDG R LTV E+ QIAGRAGR+ F EV ++ PL H
Sbjct: 243 KFDGHRQRRLTVAEMAQIAGRAGRHQRDGTFGALVEEGPGAFAPEEVLAIEEHRFPPLEH 302
Query: 365 KSLLEPSPMLES-AGLFPNFDLIYMYSRLH--PDSSLYGILEHFLENAKLSENYFFANCE 421
E P S A L + + RL P S +L+ E E++ A
Sbjct: 303 LYWREGEPDFSSIAALIASLEAKPENRRLRAAPQSVDLAVLKRMAE-----EDWVRARAR 357
Query: 422 EVLKVA 427
L VA
Sbjct: 358 HPLMVA 363
>gi|395491122|ref|ZP_10422701.1| helicase domain-containing protein [Sphingomonas sp. PAMC 26617]
Length = 838
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 139/265 (52%), Gaps = 14/265 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK---ANVSCDLITGQEREEV 139
+GPTN+GKTH A+ R+ SSG+ PLRLLA EV R+ K AN LITG+E+
Sbjct: 13 LGPTNTGKTHLAVERMCGHSSGMIGFPLRLLAREVYDRVVKIKGAN-RVALITGEEKIVP 71
Query: 140 DGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAA 198
A+ T E V D +DE Q+ RG FT R L E L G A
Sbjct: 72 KDARWFLCTAESMPVDRDLAFVAVDEAQLGADMERGHVFTDRILRARGREETMLLGSEAL 131
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
P+++ ++ +++ + R S L S + IV FS +Y + + +
Sbjct: 132 RPMVKALVP----GIEIINRPRFSTLSYAGAK--KISRLPKRSAIVAFSAEEVYAVAEML 185
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
R + ++V G+L P TR Q F + E D LVA+DAIGMGLN++++ + F+++
Sbjct: 186 R-RLRGGAAVVMGALSPRTRNAQVAMFQ--AGEVDYLVATDAIGMGLNMDVTHVAFASLN 242
Query: 319 KFDGVELRDLTVPEVKQIAGRAGRY 343
KFDG R LTV E+ QIAGRAGR+
Sbjct: 243 KFDGHRQRRLTVAEMAQIAGRAGRH 267
>gi|325294123|ref|YP_004279987.1| ATP-dependent helicase [Agrobacterium sp. H13-3]
gi|325061976|gb|ADY65667.1| ATP-dependent helicase [Agrobacterium sp. H13-3]
Length = 1028
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 147/290 (50%), Gaps = 19/290 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL----NKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV RL NV+ LIT
Sbjct: 6 RGVTAVLGPTNTGKTHYAIERMVAHGNGVIGLPLRLLAREVYTRLVEKVGAPNVA--LIT 63
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ AK+ TVE + IDE+Q+ G RG FT +L + E
Sbjct: 64 GEEKIAPPKAKYSVCTVEAMPRETTAAFVAIDEVQLAGDLERGHIFTDRVLHLRGREETL 123
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G P+++++L + V RLS L + + IV FS +
Sbjct: 124 LLGAGTMRPILEKLLP----GITVVERPRLSQL--FYAGQKKITRLPQRTAIVAFSAEEV 177
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + + R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++
Sbjct: 178 YAIAELVR-RQRGGAAVVMGALSPRTRNAQVGLYQSGDVEY--LVATDAIGMGLNLDVDH 234
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ F+ +KFDG + R+L E+ QIAGRAGR+ G+ G V D E
Sbjct: 235 VAFAQDRKFDGYQFRNLNPGEIGQIAGRAGRHLRDGTFGVTGRVDPFDDE 284
>gi|217979370|ref|YP_002363517.1| helicase domain-containing protein [Methylocella silvestris BL2]
gi|217504746|gb|ACK52155.1| helicase domain protein [Methylocella silvestris BL2]
Length = 1139
Score = 137 bits (345), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/270 (37%), Positives = 143/270 (52%), Gaps = 24/270 (8%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ S SG+ PLRLLA EV R+ + + LITG+E+ +
Sbjct: 23 LGPTNTGKTHYAIERMLSHPSGMIGLPLRLLAREVYNRVVEKIGAGAVALITGEEKIKPK 82
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAV 199
GA++ TVE D D +DEIQ+ RG FT LL +E L G
Sbjct: 83 GARYFVSTVEAMPRDLDLDFVAVDEIQLAADLDRGHVFTDRLLHHRGRSETLLIGAATMH 142
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSN------IQTGDCIVTFSRHAIYR 253
L++++L V++ RLS L SF+ + IV FS +Y
Sbjct: 143 RLVRELLP----GVRIFERPRLSKL--------SFAGERKMTRLPRRSAIVAFSAEDVYA 190
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R + ++V G+L P TR Q F + + D +VA+DA+GMGLNL++ I
Sbjct: 191 IAEWIR-RQRGGAAVVLGALSPRTRNAQVDMFQNG--DVDYIVATDAVGMGLNLDVEHIA 247
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
F++ +KFDG + R LT E QIAGRAGR+
Sbjct: 248 FASDRKFDGWQFRRLTPAEFGQIAGRAGRH 277
>gi|417102150|ref|ZP_11960644.1| putative ATP-dependent DNA helicase protein [Rhizobium etli
CNPAF512]
gi|327191766|gb|EGE58768.1| putative ATP-dependent DNA helicase protein [Rhizobium etli
CNPAF512]
Length = 1063
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 147/287 (51%), Gaps = 13/287 (4%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL-NKANV-SCDLITGQ 134
R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV R+ K V + L+TG+
Sbjct: 13 RGVTAMLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGVQNVALVTGE 72
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCG 194
E+ A+ TVE + IDE+Q+ G RG FT +L + E L
Sbjct: 73 EKISPANARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGREETLLL 132
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
A ++ ILQ+ + + RLS L + + IV FS +Y +
Sbjct: 133 GAAT---MRPILQLLLPGITIVERPRLSHL--FYAGQKKITRLPQRSAIVAFSADEVYAI 187
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ I R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++ + F
Sbjct: 188 AELIR-RQRGGAAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVDHVAF 244
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ +KFDG + R+L E+ QIAGRAGR+ G+ G+V+ D E
Sbjct: 245 AQDRKFDGYQFRNLNPGELGQIAGRAGRHVRDGTFGVTGQVSPFDEE 291
>gi|418409168|ref|ZP_12982481.1| ATP-dependent helicase [Agrobacterium tumefaciens 5A]
gi|358004485|gb|EHJ96813.1| ATP-dependent helicase [Agrobacterium tumefaciens 5A]
Length = 1028
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 147/290 (50%), Gaps = 19/290 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL----NKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV RL NV+ LIT
Sbjct: 6 RGVTAVLGPTNTGKTHYAIERMVAHGNGVIGLPLRLLAREVYTRLVEKVGAPNVA--LIT 63
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ AK+ TVE + IDE+Q+ G RG FT +L + E
Sbjct: 64 GEEKIAPPKAKYSVCTVEAMPRETTAAFVAIDEVQLAGDLERGHIFTDRVLHLRGREETL 123
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G P+++++L + V RLS L + + IV FS +
Sbjct: 124 LLGAGTMRPILEKLLP----GITVVERPRLSQL--FYAGQKKITRLPQRTAIVAFSAEEV 177
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + + R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++
Sbjct: 178 YAIAELVR-RQRGGAAVVMGALSPRTRNAQVGLYQSGDVEY--LVATDAIGMGLNLDVDH 234
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ F+ +KFDG + R+L E+ QIAGRAGR+ G+ G V D E
Sbjct: 235 VAFAQDRKFDGYQFRNLNPGEIGQIAGRAGRHLRDGTFGVTGRVDPFDDE 284
>gi|335033685|ref|ZP_08527050.1| ATP-dependent helicase [Agrobacterium sp. ATCC 31749]
gi|333794976|gb|EGL66308.1| ATP-dependent helicase [Agrobacterium sp. ATCC 31749]
Length = 1033
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 147/290 (50%), Gaps = 19/290 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL----NKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV RL NV+ LIT
Sbjct: 6 RGVTAVLGPTNTGKTHYAIERMVAHGNGVIGLPLRLLAREVYTRLVEKVGAPNVA--LIT 63
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ AK+ TVE + IDE+Q+ G RG FT +L + E
Sbjct: 64 GEEKISPPKAKYSVCTVEAMPRETTAAFVAIDEVQLAGDLERGHIFTDRVLHLRGREETL 123
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G P+++++L + V RLS L + + IV FS +
Sbjct: 124 LLGAGTMRPILEKLLP----GITVVERPRLSQL--FYAGQKKITRLPQRTAIVAFSAEEV 177
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + + R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++
Sbjct: 178 YAIAELVR-RQRGGAAVVMGALSPRTRNAQVGLYQSGDVEY--LVATDAIGMGLNLDVDH 234
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ F+ +KFDG + R+L E+ QIAGRAGR+ G+ G V D E
Sbjct: 235 VAFAQDRKFDGYQFRNLNPGEIGQIAGRAGRHLRDGTFGVTGRVDPFDDE 284
>gi|315498118|ref|YP_004086922.1| helicase domain-containing protein [Asticcacaulis excentricus CB
48]
gi|315416130|gb|ADU12771.1| helicase domain protein [Asticcacaulis excentricus CB 48]
Length = 811
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 99/268 (36%), Positives = 136/268 (50%), Gaps = 12/268 (4%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQE 135
+++ +GPTN+GKTH AL R+ + ++G+ PLRLLA EV R+ K + LITG+E
Sbjct: 19 RLVAVLGPTNTGKTHYALERMMAHATGMIGLPLRLLAREVYDRVVKEKGVNAVALITGEE 78
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCG 194
+ + TVE + D +DEIQ+ RG FT LL E G
Sbjct: 79 KIIPRLPSYFICTVEAMPLERRVDFLAVDEIQLCADIERGHVFTDRLLRARGRYETLFMG 138
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
PL + + +VQ ERLS L + + IV FS +Y +
Sbjct: 139 AATFAPLFRSLFP----HAEVQFRERLSQLSYSGSK--KLTRLPKRTAIVAFSTEQVYAI 192
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ I R + ++V GSL P+TR Q F E D LVA+DAIGMGLN++I + F
Sbjct: 193 AELIR-RQRGGAAVVMGSLSPKTRNAQVDLFQ--RGEVDFLVATDAIGMGLNMDIDHVAF 249
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGR 342
+++ KFDG R LT E QIAGRAGR
Sbjct: 250 ASLSKFDGRRTRALTAQEAAQIAGRAGR 277
>gi|254505193|ref|ZP_05117344.1| Helicase conserved C-terminal domain protein [Labrenzia alexandrii
DFL-11]
gi|222441264|gb|EEE47943.1| Helicase conserved C-terminal domain protein [Labrenzia alexandrii
DFL-11]
Length = 998
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 115/360 (31%), Positives = 176/360 (48%), Gaps = 27/360 (7%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ + SG+ PLRLLA EV R+ + + LITG+E+
Sbjct: 2 LGPTNTGKTHLAIERMLAQPSGLIGLPLRLLAREVYGRIAERAGTDAVALITGEEKIIPK 61
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAV 199
+ TVE + + + IDE+Q+ G RG FT +L + +E L G A
Sbjct: 62 QPRFWVSTVEAMPLDLNTEFVAIDEVQLAGNLDRGHVFTDRILNLRGRSETLLLGSATAR 121
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
PL+++++ + V + R+S L S + IV FS +Y + + +
Sbjct: 122 PLLEKLIP----GLNVVTRPRMSILSYAGSK--KVSRLPARSAIVAFSSDEVYSIAELLR 175
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R + ++V GSL P TR Q F + + D LVA+DAIGMGLNL++ I F+ +K
Sbjct: 176 -RQRGGAAVVLGSLSPRTRNAQVDLFQNG--DVDHLVATDAIGMGLNLDVHHIAFAGNRK 232
Query: 320 FDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE- 375
+DG + R LT E+ QIAGRAGR+ G+ G V LD + + + + +L+
Sbjct: 233 YDGYQYRQLTPSEMGQIAGRAGRHTKDGTFGVSGRVDPLDDDLIEQIESHHFDSLKVLQW 292
Query: 376 ---------SAGLFPNFDLIYMYSRL--HPDSSLYGILEHFLENAKLSENYFFANCEEVL 424
+ L + DL L P LEH L ++ +S+ AN E+L
Sbjct: 293 RNSALDFSSTNALRRSLDLPPREDGLARAPTGDDIKALEHLLRDSAISDMAKGANAVELL 352
>gi|190893874|ref|YP_001980416.1| ATP-dependent DNA helicase [Rhizobium etli CIAT 652]
gi|190699153|gb|ACE93238.1| putative ATP-dependent DNA helicase protein [Rhizobium etli CIAT
652]
Length = 1056
Score = 137 bits (344), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 147/288 (51%), Gaps = 15/288 (5%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL-NKANV-SCDLITGQ 134
R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV R+ K V + L+TG+
Sbjct: 6 RGVTAMLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGVQNVALVTGE 65
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLC 193
E+ A+ TVE + IDE+Q+ G RG FT +L + E L
Sbjct: 66 EKISPANARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGREETLLL 125
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G P++Q +L + + RLS L + + IV FS +Y
Sbjct: 126 GAATMRPILQLLLP----GITIVERPRLSHL--FYAGQKKITRLPQRSAIVAFSADEVYA 179
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++ +
Sbjct: 180 IAELIR-RQRGGAAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDVDHVA 236
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
F+ +KFDG + R+L E+ QIAGRAGR+ G+ G+V+ D E
Sbjct: 237 FAQDRKFDGYQFRNLNPGELGQIAGRAGRHVRDGTFGVTGQVSPFDEE 284
>gi|413918546|gb|AFW58478.1| hypothetical protein ZEAMMB73_304726 [Zea mays]
Length = 151
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 71/154 (46%), Positives = 92/154 (59%), Gaps = 20/154 (12%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
TDLT PHTWYP R R+V+ H GPTNSGKTH AL+ ++ G+YC PLRLLA E+
Sbjct: 15 TDLTAPHTWYPSTRAMRRRVVYHCGPTNSGKTHNALASFSAAKCGVYCSPLRLLAIEIFD 74
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT 179
++N VSC L TGQE +EV A H A T+EM +EI TR T
Sbjct: 75 KVNATGVSCSLRTGQEVKEVAFASHLACTIEMVST---------EEIS-----TRSPLLT 120
Query: 180 RALLGICANELHLCGDPAAVPLIQQILQVTGDDV 213
R A+E+HLCGDP+ + ++++I TGDD+
Sbjct: 121 R------ADEIHLCGDPSVLSIVRKICADTGDDL 148
>gi|262277942|ref|ZP_06055735.1| ATP-dependent helicase [alpha proteobacterium HIMB114]
gi|262225045|gb|EEY75504.1| ATP-dependent helicase [alpha proteobacterium HIMB114]
Length = 823
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 102/295 (34%), Positives = 152/295 (51%), Gaps = 19/295 (6%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLITG 133
+++ +GPTN+GKT A+ R+ +G+ PLRLLA EV R+ V+ L+TG
Sbjct: 8 QILAILGPTNTGKTFLAIERMLEHGNGVMGFPLRLLAREVYDKIVNRIGPERVA--LVTG 65
Query: 134 QEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHL- 192
+E+ + + TVE + +++ IDEIQM RG FT LL ++L +
Sbjct: 66 EEKIIPPKSDYYLCTVESMPLDINFEFVAIDEIQMCADPERGHIFTDRLLNFRGDKLTMF 125
Query: 193 CGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIY 252
G LI ++ T + ERLS L S I+ I+ FS +Y
Sbjct: 126 LGSDTIKKLITTLVPET----EFIYRERLSKLTYSGYK--KISRIKPRSAIIAFSVDDVY 179
Query: 253 RLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRI 312
L + + R K ++V GSL P+TR Q + S + D L+A+DAIGMG+N++I +
Sbjct: 180 ALAEFVR-RQKGGAAVVMGSLSPKTRNSQVDIY--QSGDVDFLIATDAIGMGINMDIENV 236
Query: 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLH 364
FS +KK+DG ++R+L E+ QI+GRAGRY GS GE L E + L
Sbjct: 237 YFSGLKKYDGKQIRNLRDSEIGQISGRAGRYMNDGSFGTTGECEKLTDEQIEKLE 291
>gi|163792657|ref|ZP_02186634.1| Helicase-like protein [alpha proteobacterium BAL199]
gi|159182362|gb|EDP66871.1| Helicase-like protein [alpha proteobacterium BAL199]
Length = 936
Score = 136 bits (343), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 98/267 (36%), Positives = 140/267 (52%), Gaps = 18/267 (6%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ SG+ PLRLLA E R+ K + LITG+E+
Sbjct: 14 LGPTNTGKTHLAIERMLGHESGMIGFPLRLLARENYDRVVAAKGARAVALITGEEKIVPA 73
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAV 199
A++ TVE + + IDEIQ+ G RG FT R + A E G
Sbjct: 74 EARYFVCTVESMPLDREVAFLAIDEIQLAGDPERGHVFTDRLMHARGAEETMFLGADTIR 133
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLV---PLNVPLGSFSNIQTGDCIVTFSRHAIYRLKK 256
PL+Q+++ + +V++ RLS L P + + + IV FS +Y L +
Sbjct: 134 PLLQRLVP----EARVETRPRLSKLTYAGPCKI-----TRLPRRSAIVAFSAADVYALAE 184
Query: 257 AIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFST 316
I R + ++V G+L P TR Q F + E D L+A+DAIGMGLN+++ + F+
Sbjct: 185 -IVRRQRGGAAVVMGALSPRTRNAQVKLFQE--GEVDYLIATDAIGMGLNMDVDHVAFAE 241
Query: 317 MKKFDGVELRDLTVPEVKQIAGRAGRY 343
KFDG R LT E+ QIAGRAGR+
Sbjct: 242 DAKFDGRMPRKLTPAELAQIAGRAGRH 268
>gi|402772688|ref|YP_006592225.1| helicase domain-containing protein [Methylocystis sp. SC2]
gi|401774708|emb|CCJ07574.1| Helicase domain protein [Methylocystis sp. SC2]
Length = 1056
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 112/319 (35%), Positives = 151/319 (47%), Gaps = 29/319 (9%)
Query: 70 PLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD 129
P AR R V +GPTN+GKTH A+ R+ S SG+ PLRLLA EV R+ A V D
Sbjct: 14 PRARPFDRGVAAVLGPTNTGKTHHAIERMLSFPSGVIGLPLRLLAREVYNRV-AARVGAD 72
Query: 130 ---LITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC 186
LITG+E+ + + TVE D IDEIQ+ RG FT LL
Sbjct: 73 NVALITGEEKIKPRAPAYWVATVEAMPRDVQADFVAIDEIQLAADLDRGHIFTDRLLHWR 132
Query: 187 A-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF------SNIQT 239
E L G PL+ ++ + + RLS L SF S +
Sbjct: 133 GRQETLLIGAATMAPLVTELFP----GAPIFTRPRLSKL--------SFAGDKKISRLPP 180
Query: 240 GDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD 299
IV FS +Y + + I+ R + ++V G L P TR Q + + D +VA+D
Sbjct: 181 RSAIVAFSAEEVYAIAELIK-RQRGGAAVVLGVLSPRTRNAQIELYQ--GGDVDYIVATD 237
Query: 300 AIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK---FPVGEVTCLD 356
AIGMGLNL++ + F++ +KFDG+ R LT E QIAGRAGR+ S G D
Sbjct: 238 AIGMGLNLDVDHVAFASDRKFDGLRHRRLTPAEFGQIAGRAGRHMSDGFFGATGRCPPFD 297
Query: 357 SEDLPLLHKSLLEPSPMLE 375
E + L +P L+
Sbjct: 298 EELIEALEDHRFDPVKTLQ 316
>gi|357385955|ref|YP_004900679.1| ATP-dependent DNA helicase [Pelagibacterium halotolerans B2]
gi|351594592|gb|AEQ52929.1| ATP-dependent DNA helicase [Pelagibacterium halotolerans B2]
Length = 991
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 113/329 (34%), Positives = 159/329 (48%), Gaps = 22/329 (6%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ + SG+ PLRLLA EV R+ + + L+TG+ER
Sbjct: 13 LGPTNTGKTHYAIERMLAYRSGVIGLPLRLLAREVYNRVVERVGESAVALVTGEERIVPK 72
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAV 199
A++ TVE D IDEIQ RG FT LL E L G
Sbjct: 73 AARYWVATVEAMPTDMMVDFLAIDEIQTATDFDRGHVFTDRLLHARGRAETLLLGAQTME 132
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
P+I+++L ++ R S L S + IV FS +Y + + +
Sbjct: 133 PVIRRLLP----HAEITFRPRFSQLSWAGS--RKISRLPRRSAIVAFSASEVYAIAELLR 186
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R + ++V GSL P TR Q F + + D LVA+DAIGMGLNL+++ + F++ K
Sbjct: 187 -RERGGAAVVMGSLSPRTRNAQVDLFQNG--DVDFLVATDAIGMGLNLDVTHVAFASDSK 243
Query: 320 FDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLES 376
+DG + R LT E+ QIAGRAGR+ G+ G D E + L P L+
Sbjct: 244 YDGRQFRPLTPAEIGQIAGRAGRHMRDGTFGVTGGTDAFDEETIAALEAHDFAPVKQLQ- 302
Query: 377 AGLFPNFDLIYM-YSRLHPDSSLYGILEH 404
+ N DL + S LH +SL EH
Sbjct: 303 ---WRNRDLDFRSLSALH--ASLEITPEH 326
>gi|299470376|emb|CBN78425.1| ATP-dependent RNA and DNA helicase, putative [Ectocarpus
siliculosus]
Length = 361
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 82/243 (33%), Positives = 128/243 (52%), Gaps = 28/243 (11%)
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
+GD +V FSR I+ +KK IES+ H C ++YGSLP ETR QA FN + +DVLVAS
Sbjct: 3 SGDAVVAFSRKDIFSIKKEIESKTPHKCCVIYGSLPQETRAHQARLFNSEDTGYDVLVAS 62
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPE--VKQIAGRAGRYGSKFPVGEVTCLD 356
DA+GMGLNLNI R++F + K G + +P +KQI GRAGR+G ++ GE+
Sbjct: 63 DAVGMGLNLNIRRVVFHAVSKRTGGGRAAVKLPPTMLKQIGGRAGRHGKQWEYGEIM--- 119
Query: 357 SEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRL-------HPDSS----LYGILEHF 405
+ LEP P A +FP+ + +S +P+ L F
Sbjct: 120 --------NTPLEPIP---KAAIFPSVQHMQEFSNCLDETEADNPEGQERRRLAETFAAF 168
Query: 406 LENAKLSENYFFANCEEVLKVATVIDQLP-LRLHEKYLFCISPVDMNDDISSQGLTQFAT 464
+ AK+ + YF ++ +A + + L L E+Y ++P++ + + + + FAT
Sbjct: 169 ADKAKVGDRYFLGTHDQHQALANALHPVENLTLKERYAISMAPINGRNTLLVRAIFLFAT 228
Query: 465 NYS 467
++
Sbjct: 229 AHA 231
>gi|218532734|ref|YP_002423550.1| helicase [Methylobacterium extorquens CM4]
gi|218525037|gb|ACK85622.1| helicase domain protein [Methylobacterium extorquens CM4]
Length = 1136
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 108/321 (33%), Positives = 157/321 (48%), Gaps = 23/321 (7%)
Query: 75 KVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDL 130
+ R V +GPTN+GKTH A+ R+ +G+ PLRLLA EV ++ NV+ L
Sbjct: 11 RARGVTAVLGPTNTGKTHMAIERMLLHPTGMIGLPLRLLAREVYLRVVAKVGSENVA--L 68
Query: 131 ITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANE 189
ITG+E+ + D ++ T+E D IDEIQ+ RG FT R L E
Sbjct: 69 ITGEEKIKPDRPRYWICTIEAMPRDLDVAFVAIDEIQLAADMDRGHVFTDRLLYRRGREE 128
Query: 190 LHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRH 249
L G +PL+Q ++ V+ + RLS L S + IV FS
Sbjct: 129 TLLIGSSTMLPLVQALIP----GVQTTTRPRLSSLTFAGEK--KISRLPHRTAIVAFSAE 182
Query: 250 AIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNI 309
+Y + + I R + ++V G+L P TR Q + S + D LVA+DA+GMGLNL++
Sbjct: 183 EVYAIAELIR-RQRGGAAVVLGALSPRTRNAQVELYQ--SGDVDYLVATDAVGMGLNLDV 239
Query: 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKS 366
+ F+ K+DG R L+ E+ QIAGRAGR+ G+ G + E + L
Sbjct: 240 DHVAFAANWKYDGTRFRKLSPAEMGQIAGRAGRHIADGTFGSTGRCPPFEPEMVEALETH 299
Query: 367 LLEPSPMLESAGLFPNFDLIY 387
EP ML+ + N DL +
Sbjct: 300 DFEPVRMLQ----WRNPDLEF 316
>gi|338533423|ref|YP_004666757.1| putative helicase [Myxococcus fulvus HW-1]
gi|337259519|gb|AEI65679.1| putative helicase [Myxococcus fulvus HW-1]
Length = 790
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 139/276 (50%), Gaps = 12/276 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQEREEVD 140
+GPTN+GKTH+A+ R+ SGI PLRLLA EV R+ L+TG+E+
Sbjct: 16 LGPTNTGKTHRAIERMLEHDSGIMGLPLRLLAREVYDRVTARVGEGRVALMTGEEKRLPP 75
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAV 199
+ TVE + D +DEIQ+ + RG FT R L E G
Sbjct: 76 RPDYWICTVEAMPTDTAVDFIAVDEIQLAAHRERGHVFTDRLLHARGRKETWFLGADTMR 135
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
P++Q ++ V+ RLS L S ++ +V FS +Y L +++
Sbjct: 136 PMVQTLIP----HASVKRATRLSQL--RYAGHRSLKSLPPRSAVVAFSADRVYELAESLR 189
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R + ++V G+L P TR Q + S E LVA+DAIGMGLNL+++ + F+ + K
Sbjct: 190 -RLRGGVAVVLGALSPRTRNAQVAMYQ--SGEVQYLVATDAIGMGLNLDLNHVAFAALSK 246
Query: 320 FDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 355
FDG + R+L E+ QIAGRAGR+ + G + L
Sbjct: 247 FDGADQRELYPDELAQIAGRAGRHLNDGSFGTLNTL 282
>gi|414169083|ref|ZP_11424920.1| hypothetical protein HMPREF9696_02775 [Afipia clevelandensis ATCC
49720]
gi|410885842|gb|EKS33655.1| hypothetical protein HMPREF9696_02775 [Afipia clevelandensis ATCC
49720]
Length = 1094
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 100/264 (37%), Positives = 140/264 (53%), Gaps = 14/264 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD---LITGQEREEV 139
+GPTN+GKTH A+ R+ + SSGI PLRLLA EV +++ A D LITG+E+ +
Sbjct: 24 LGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREVYNKIS-ARAGADAVALITGEEKIKP 82
Query: 140 DGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAA 198
A++ TVE D +DEIQ+ RG FT +L +E L G
Sbjct: 83 PRARYWVSTVEAMPRDLDVSFLAVDEIQIAADLERGHVFTDRILNRRGRDETLLLGAATM 142
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
P+I+++L V + + RLS L V + IV FS +Y + + I
Sbjct: 143 RPIIERLLP----GVNIVTRPRLSQLE--FVGDRKITRQPRRTAIVAFSADEVYAIAELI 196
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
R ++V GSL P TR Q F S + D LVA+DA+GMGLNL++ + F++ +
Sbjct: 197 R-RQHGGAAVVLGSLSPRTRNAQVDMFQ--SGDVDYLVATDAVGMGLNLDVDHVAFASDR 253
Query: 319 KFDGVELRDLTVPEVKQIAGRAGR 342
K+DG + R LT E QIAGRAGR
Sbjct: 254 KYDGYQFRRLTPAEFAQIAGRAGR 277
>gi|338972201|ref|ZP_08627577.1| ATP-dependent DNA helicase [Bradyrhizobiaceae bacterium SG-6C]
gi|338234593|gb|EGP09707.1| ATP-dependent DNA helicase [Bradyrhizobiaceae bacterium SG-6C]
Length = 1108
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 100/264 (37%), Positives = 140/264 (53%), Gaps = 14/264 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD---LITGQEREEV 139
+GPTN+GKTH A+ R+ + SSGI PLRLLA EV +++ A D LITG+E+ +
Sbjct: 32 LGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREVYNKIS-ARAGADAVALITGEEKIKP 90
Query: 140 DGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAA 198
A++ TVE D +DEIQ+ RG FT +L +E L G
Sbjct: 91 PRARYWVSTVEAMPRDLDVSFLAVDEIQIAADLERGHVFTDRILNRRGRDETLLLGAATM 150
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
P+I+++L V + + RLS L V + IV FS +Y + + I
Sbjct: 151 RPIIERLLP----GVNIVTRPRLSQLE--FVGDRKITRQPRRTAIVAFSADEVYAIAELI 204
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
R ++V GSL P TR Q F S + D LVA+DA+GMGLNL++ + F++ +
Sbjct: 205 R-RQHGGAAVVLGSLSPRTRNAQVDMFQ--SGDVDYLVATDAVGMGLNLDVDHVAFASDR 261
Query: 319 KFDGVELRDLTVPEVKQIAGRAGR 342
K+DG + R LT E QIAGRAGR
Sbjct: 262 KYDGYQFRRLTPAEFAQIAGRAGR 285
>gi|294012718|ref|YP_003546178.1| putative helicase [Sphingobium japonicum UT26S]
gi|292676048|dbj|BAI97566.1| putative helicase [Sphingobium japonicum UT26S]
Length = 878
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/285 (35%), Positives = 144/285 (50%), Gaps = 23/285 (8%)
Query: 71 LARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSC 128
AR V V+ GPTN+GKTH A+ R+ SSG+ PLRLLA EV R+ K
Sbjct: 11 FARSPVTAVL---GPTNTGKTHLAVERMCGHSSGMMGFPLRLLAREVYDRVVGMKGPAQV 67
Query: 129 DLITGQEREEVDGAKHRAVTVEMADV----------VSDYDCAVIDEIQMLGCKTRGFSF 178
LITG+E+ GA++ T E + + DY +DE Q+ RG F
Sbjct: 68 ALITGEEKIVPPGARYFLCTAESMPIGGGREPAQEGLKDYAFVALDEAQLGADPERGHIF 127
Query: 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQ 238
T LL E + A+ I ++++ D ++ R S L S +
Sbjct: 128 TDRLLRARGREETMILGSAS---IGRLVKALVPDAEIIGRPRFSTLSYAGAK--KLSRLP 182
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
IV FS +Y + + + R + ++V G+L P TR Q F + E D LVA+
Sbjct: 183 KRSAIVAFSAEEVYAVAEMLR-RFRGGAAVVMGALSPRTRNAQVQMF--LNGEVDYLVAT 239
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
DAIGMGLNL+++ + F++++KFDG R LTV E+ QIAGRAGR+
Sbjct: 240 DAIGMGLNLDVAHVAFASLRKFDGRRTRRLTVSEMAQIAGRAGRH 284
>gi|390166272|ref|ZP_10218535.1| helicase domain-containing protein [Sphingobium indicum B90A]
gi|389590669|gb|EIM68654.1| helicase domain-containing protein [Sphingobium indicum B90A]
Length = 891
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 101/285 (35%), Positives = 144/285 (50%), Gaps = 23/285 (8%)
Query: 71 LARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSC 128
AR V V+ GPTN+GKTH A+ R+ SSG+ PLRLLA EV R+ K
Sbjct: 11 FARSPVTAVL---GPTNTGKTHLAVERMCGHSSGMMGFPLRLLAREVYDRVVGMKGPAQV 67
Query: 129 DLITGQEREEVDGAKHRAVTVEMADV----------VSDYDCAVIDEIQMLGCKTRGFSF 178
LITG+E+ GA++ T E + + DY +DE Q+ RG F
Sbjct: 68 ALITGEEKIVPPGARYFLCTAESMPIGGGREPAQEGLKDYAFVALDEAQLGADPERGHIF 127
Query: 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQ 238
T LL E + A+ I ++++ D ++ R S L S +
Sbjct: 128 TDRLLRARGREETMILGSAS---IGRLVKALVPDAEIIGRPRFSTLSYAGAK--KLSRLP 182
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
IV FS +Y + + + R + ++V G+L P TR Q F + E D LVA+
Sbjct: 183 KRSAIVAFSAEEVYAVAEMLR-RFRGGAAVVMGALSPRTRNAQVQMF--LNGEVDYLVAT 239
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
DAIGMGLNL+++ + F++++KFDG R LTV E+ QIAGRAGR+
Sbjct: 240 DAIGMGLNLDVAHVAFASLRKFDGRRTRRLTVAEMAQIAGRAGRH 284
>gi|254563753|ref|YP_003070848.1| hypothetical protein METDI5429 [Methylobacterium extorquens DM4]
gi|254271031|emb|CAX27038.1| conserved hypothetical protein; putative ATP-dependent RNA and DNA
helicase (N-terminal) and conserved C-terminal DEAD/DEAH
box domain protein (C-terminal) [Methylobacterium
extorquens DM4]
Length = 1135
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 108/321 (33%), Positives = 157/321 (48%), Gaps = 23/321 (7%)
Query: 75 KVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDL 130
+ R V +GPTN+GKTH A+ R+ +G+ PLRLLA EV ++ NV+ L
Sbjct: 11 RARGVTAVLGPTNTGKTHMAIERMLLHPTGMIGLPLRLLAREVYLRVVAKVGSENVA--L 68
Query: 131 ITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANE 189
ITG+E+ + D ++ T+E D IDEIQ+ RG FT R L E
Sbjct: 69 ITGEEKIKPDRPRYWICTIEAMPRDLDVAFVAIDEIQLAADMDRGHVFTDRLLYRRGREE 128
Query: 190 LHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRH 249
L G +PL+Q ++ V+ + RLS L S + IV FS
Sbjct: 129 TLLIGSSTMLPLVQALIP----GVQTTTRPRLSSLTFAGEK--KISRLPHRTAIVAFSAE 182
Query: 250 AIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNI 309
+Y + + I R + ++V G+L P TR Q + S + D LVA+DA+GMGLNL++
Sbjct: 183 EVYAIAELIR-RQRGGAAVVLGALSPRTRNAQVELYQ--SGDVDYLVATDAVGMGLNLDV 239
Query: 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKS 366
+ F+ K+DG R L+ E+ QIAGRAGR+ G+ G + E + L
Sbjct: 240 DHVAFAANWKYDGTRFRKLSPAEMGQIAGRAGRHIADGTFGSTGRCPPFEPEMVEALETH 299
Query: 367 LLEPSPMLESAGLFPNFDLIY 387
EP ML+ + N DL +
Sbjct: 300 DFEPVRMLQ----WRNPDLEF 316
>gi|402489731|ref|ZP_10836524.1| helicase [Rhizobium sp. CCGE 510]
gi|401811070|gb|EJT03439.1| helicase [Rhizobium sp. CCGE 510]
Length = 1081
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 148/290 (51%), Gaps = 15/290 (5%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL-NKANV-SCDLITGQ 134
R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV R+ K V + L+TG+
Sbjct: 13 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGVQNVALVTGE 72
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLC 193
E+ A+ TVE + IDE+Q+ G RG FT +L + E L
Sbjct: 73 EKISPPNARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGREETLLL 132
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G P++ Q+L + + RLS L + + IV FS +Y
Sbjct: 133 GAATMRPILLQLLP----GINIVERPRLSHL--FYAGQKKITRLPQRSAIVAFSADEVYA 186
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++ +
Sbjct: 187 IAELIR-RQRGGAAVVLGALSPRTRNSQVALYQAGDVEY--LVATDAIGMGLNLDVDHVA 243
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDL 360
F+ +KFDG + R+L E+ Q+AGRAGR+ G+ G+V+ D E +
Sbjct: 244 FAQDRKFDGYQFRNLNPGELGQVAGRAGRHVRDGTFGVTGQVSPFDEEQV 293
>gi|323135912|ref|ZP_08070995.1| helicase domain protein [Methylocystis sp. ATCC 49242]
gi|322399003|gb|EFY01522.1| helicase domain protein [Methylocystis sp. ATCC 49242]
Length = 1018
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 107/300 (35%), Positives = 147/300 (49%), Gaps = 17/300 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD---LITGQEREEV 139
+GPTN+GKTH A+ R+ S +G+ PLRLLA EV R+ A V D LITG+E+ +
Sbjct: 20 LGPTNTGKTHHAIERMLSFPTGVIGLPLRLLAREVYNRV-VAKVGSDAVALITGEEKIKP 78
Query: 140 DGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAA 198
+ TVE + D IDEIQ+ RG FT LL E L G
Sbjct: 79 RAPAYWISTVEAMPRDIEVDFLAIDEIQLAADLDRGHVFTDRLLRWRGRQETLLIGADTM 138
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
PLI ++ + S RLS L S + IV FS +Y + + I
Sbjct: 139 APLIGELFP----GAPIFSRPRLSRLTFAGD--RKISRLPPRTAIVAFSAEEVYAIAEWI 192
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
+ R + ++V G+L P TR Q F S + D ++A+DAIGMGLNL++ + F++ +
Sbjct: 193 K-RQRGGAAVVLGALSPRTRNAQVELFQ--SGDVDYIIATDAIGMGLNLDVDYVAFASDR 249
Query: 319 KFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 375
KFDG R LT E QIAGRAGR+ G G D E + L +P +L+
Sbjct: 250 KFDGWRYRRLTPAEFGQIAGRAGRHMSDGQFGATGRCPPFDEELIEALEDHRFDPVALLQ 309
>gi|163853790|ref|YP_001641833.1| helicase domain-containing protein [Methylobacterium extorquens
PA1]
gi|163665395|gb|ABY32762.1| helicase domain protein [Methylobacterium extorquens PA1]
Length = 1140
Score = 135 bits (341), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 108/321 (33%), Positives = 157/321 (48%), Gaps = 23/321 (7%)
Query: 75 KVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDL 130
+ R V +GPTN+GKTH A+ R+ +G+ PLRLLA EV ++ NV+ L
Sbjct: 11 RARGVTAVLGPTNTGKTHMAIERMLLHPTGMIGLPLRLLAREVYLRVVAKVGSENVA--L 68
Query: 131 ITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANE 189
ITG+E+ + D ++ T+E D IDEIQ+ RG FT R L E
Sbjct: 69 ITGEEKIKPDRPRYWICTIEAMPRDLDVAFVAIDEIQLAADMDRGHVFTDRLLYRRGREE 128
Query: 190 LHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRH 249
L G +PL+Q ++ V+ + RLS L S + IV FS
Sbjct: 129 TLLIGSSTMLPLVQALIP----GVQTTTRPRLSSLTFAGEK--KISRLPHRTAIVAFSAE 182
Query: 250 AIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNI 309
+Y + + I R + ++V G+L P TR Q + S + D LVA+DA+GMGLNL++
Sbjct: 183 EVYAIAELIR-RQRGGAAVVLGALSPRTRNAQVELYQ--SGDVDYLVATDAVGMGLNLDV 239
Query: 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKS 366
+ F+ K+DG R L+ E+ QIAGRAGR+ G+ G + E + L
Sbjct: 240 DHVAFAANWKYDGTRFRKLSPAEMGQIAGRAGRHIADGTFGSTGRCPPFEPEMVEALETH 299
Query: 367 LLEPSPMLESAGLFPNFDLIY 387
EP ML+ + N DL +
Sbjct: 300 DFEPVRMLQ----WRNPDLEF 316
>gi|312114757|ref|YP_004012353.1| helicase [Rhodomicrobium vannielii ATCC 17100]
gi|311219886|gb|ADP71254.1| helicase domain protein [Rhodomicrobium vannielii ATCC 17100]
Length = 1147
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 104/316 (32%), Positives = 157/316 (49%), Gaps = 15/316 (4%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD--LITGQ 134
R V +GPTN+GKTH A+ R+ SG+ PLRLLA EV ++ D LITG+
Sbjct: 16 RHVTAVLGPTNTGKTHLAIERMLGHESGLIGLPLRLLAREVYDKIVAQIGPRDVALITGE 75
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLC 193
E+ + + ++ TVE + D +DEIQ+ RG FT R +E L
Sbjct: 76 EKIKPERPRYYVCTVEAMPRDVEVDFLAVDEIQLAADPDRGHVFTDRLFHSRGTSETLLL 135
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G I++++ + RLS L + +Q+ IV FS + +Y
Sbjct: 136 GAATMTDAIRELIP----GANFIARPRLSKLTYSG--QKKITRLQSRSAIVAFSANDVYA 189
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R + ++V G+L P TR Q + + + D +VA+DAIGMGLNL++ +
Sbjct: 190 IAELIR-RQRGGAAVVLGALSPRTRNAQVALYQNG--DVDFIVATDAIGMGLNLDVDHVA 246
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEP 370
F+ +KFDG RDLT E+ QIAGRAGR+ G+ +V D E + L EP
Sbjct: 247 FAGTRKFDGRNHRDLTPAEIAQIAGRAGRHLNDGTFGVTADVEPFDQEVVNKLENHDFEP 306
Query: 371 SPMLESAGLFPNFDLI 386
+ +L+ +FD +
Sbjct: 307 AKLLQWRNTRLDFDSV 322
>gi|259417878|ref|ZP_05741797.1| MgpS [Silicibacter sp. TrichCH4B]
gi|259346784|gb|EEW58598.1| MgpS [Silicibacter sp. TrichCH4B]
Length = 929
Score = 135 bits (341), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 106/286 (37%), Positives = 143/286 (50%), Gaps = 17/286 (5%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQE 135
+V+ +GPTN+GKTH A+ R+ +GI PLRLLA EV ++ K L+TG+E
Sbjct: 6 RVVAVLGPTNTGKTHYAIDRMLGYRTGIMGFPLRLLAREVYDKIVKLRGPSVVALVTGEE 65
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI--CANELHLC 193
R A++ TVE D IDEIQ+ G RG FT LL L L
Sbjct: 66 RIVPPRAQYWICTVEAMPEGMGCDFLAIDEIQLCGDPERGHVFTDRLLRSRGLKETLFLG 125
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
D P+ + V+ ER+S LV S + IV FS ++Y
Sbjct: 126 ADTMRGPISALV-----PGVEFVRRERMSELVYAGSK--KISRMPPRTAIVGFSVDSVYA 178
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R K ++V G+L P TR Q + + E D LVA+DAIGMGLNL++ +
Sbjct: 179 IAELIR-RQKGGAAVVMGALSPRTRNAQVALYQNG--EVDYLVATDAIGMGLNLDVDHVA 235
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGR---YGSKFPVGEVTCLD 356
FS+ KFDG +R L E+ QIAGRAGR +GS G+ LD
Sbjct: 236 FSSTSKFDGRRMRPLAPNELAQIAGRAGRGMSHGSFGVTGDARPLD 281
>gi|254474503|ref|ZP_05087889.1| Helicase conserved C-terminal domain protein [Ruegeria sp. R11]
gi|214028746|gb|EEB69581.1| Helicase conserved C-terminal domain protein [Ruegeria sp. R11]
Length = 1003
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 106/287 (36%), Positives = 143/287 (49%), Gaps = 17/287 (5%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN--VSCDLITGQ 134
R+++ +GPTN+GKTH A+ R+ +GI PLRLLA EV ++ A L+TG+
Sbjct: 10 RRIVAVLGPTNTGKTHYAIERMLGYRTGIMGFPLRLLAREVYDKVVAARGPSVVALVTGE 69
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE--LHL 192
ER A++ TVE D IDEIQ+ RG FT LL L L
Sbjct: 70 ERIVPPRAQYWICTVEAMPEGMGCDFLAIDEIQLCADPERGHVFTDRLLRARGTRETLFL 129
Query: 193 CGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIY 252
D P+ + V+ ER+S LV S + IV FS +Y
Sbjct: 130 GADTMRGPISALV-----PGVQFMRRERMSDLVYSGSK--KISRMPPRTAIVGFSIDNVY 182
Query: 253 RLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRI 312
+ + I R K ++V G+L P TR Q + + E D LVA+DAIGMGLNL+I +
Sbjct: 183 AIAELIR-RQKGGAAVVMGALSPRTRNAQVAMYQNG--EVDYLVATDAIGMGLNLDIDHV 239
Query: 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGR---YGSKFPVGEVTCLD 356
FS++ KFDG +R L E+ QIAGRAGR +GS G+ LD
Sbjct: 240 AFSSLSKFDGRRMRQLAPNELAQIAGRAGRGMSHGSFGVTGDAPPLD 286
>gi|406707337|ref|YP_006757689.1| helicase family protein [alpha proteobacterium HIMB59]
gi|406653113|gb|AFS48512.1| helicase family protein [alpha proteobacterium HIMB59]
Length = 848
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 104/293 (35%), Positives = 157/293 (53%), Gaps = 33/293 (11%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLA---WEVAKRLNKANVSCDLITGQ 134
+V + +GPTN+GKT A ++ S SG++ PLRLLA ++ A L N LITG+
Sbjct: 3 QVEIILGPTNTGKTFYAFEQMFSYQSGVFGFPLRLLARENYDKACNLYPIN-QIALITGE 61
Query: 135 EREEVDGAKHRAVTVE-MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLC 193
E+ AK+ TVE M + ++ C +DEIQ+ RG FT+ +L +
Sbjct: 62 EKIIPKDAKYFFCTVESMPEDFFEFVC--VDEIQLAADYERGHIFTQRIL-------YAR 112
Query: 194 GDPAAVPL----IQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRH 249
G+ + L +++I++ DV+++ R S L + NI+ I+ F+
Sbjct: 113 GEQKTIFLGSTTMEEIIKELIPDVEIKFKNRFSELNF--IGHKKIQNIKPRSAIIAFNLI 170
Query: 250 AIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNI 309
+Y + + I S K ++V G+L P+TR Q + D E D +VA+DAIGMGLNLNI
Sbjct: 171 GLYEIAEQIRSL-KGGVALVAGALSPKTRNSQVKLYEDG--EVDYIVATDAIGMGLNLNI 227
Query: 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY----------GSKFPVGEV 352
+++ FS ++KFDG R L+ EV QIAGRAGRY G+KF E+
Sbjct: 228 NQVYFSGLEKFDGKYTRPLSDMEVAQIAGRAGRYTKSGYFGSTLGAKFTNMEI 280
>gi|126727499|ref|ZP_01743333.1| helicase, putative [Rhodobacterales bacterium HTCC2150]
gi|126703279|gb|EBA02378.1| helicase, putative [Rhodobacterales bacterium HTCC2150]
Length = 930
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 109/312 (34%), Positives = 150/312 (48%), Gaps = 16/312 (5%)
Query: 70 PLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVS 127
PL R KV+ +GPTN+GKTH A+ R+ + SG+ PLRLLA EV ++ +
Sbjct: 14 PLMRD-FSKVVAVLGPTNTGKTHYAIERMLAHKSGVIGLPLRLLAREVYDKIVALRGPSV 72
Query: 128 CDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGIC 186
L+TG+ER D A + TVE D +DEIQ+ RG FT R L
Sbjct: 73 VALVTGEERIVPDRAAYWVATVEAMPQEIGADFVAVDEIQLCADPERGHVFTDRLLHARG 132
Query: 187 ANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF 246
+E G I ++ + + +R S L S ++ IV F
Sbjct: 133 RHETLFMGADTMRSAIAGLIP----EAQFLYRDRFSTLTYTGS--RKISRMKPRSAIVGF 186
Query: 247 SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 306
S ++Y + + I R K ++V G+L P TR Q + + E+ LVA+DAIGMGLN
Sbjct: 187 SVDSVYSIAEWIR-RQKGGAAVVMGALSPRTRNAQVEMYQNGDVEY--LVATDAIGMGLN 243
Query: 307 LNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLL 363
L+I I FS KFDG +R L E+ QIAGRAGRY G+ GE LD + +
Sbjct: 244 LDIDHIAFSGTVKFDGHRMRPLQPNEMAQIAGRAGRYMNAGTFGVTGEAEPLDDALVEAI 303
Query: 364 HKSLLEPSPMLE 375
K P L+
Sbjct: 304 EKHQFPPVTRLQ 315
>gi|108760067|ref|YP_630462.1| helicase [Myxococcus xanthus DK 1622]
gi|108463947|gb|ABF89132.1| putative helicase [Myxococcus xanthus DK 1622]
Length = 822
Score = 135 bits (340), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 138/276 (50%), Gaps = 12/276 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQEREEVD 140
+GPTN+GKTH+A+ R+ SGI PLRLLA EV R+ L+TG+E+
Sbjct: 16 LGPTNTGKTHRAIERMLEHGSGIMGLPLRLLAREVYDRVTARVGEGRVALMTGEEKRVPP 75
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAV 199
+ TVE D +DEIQ+ + RG FT R L E G
Sbjct: 76 RPDYWICTVEAMPTDKSVDFLAVDEIQLAAHRERGHVFTDRLLHARGRKETWFLGADTMR 135
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
P++Q ++ V+ RLS L S ++ +V FS +Y L +++
Sbjct: 136 PMVQTLI----PHASVKRATRLSQL--RYAGHRSLKSLPPRSAVVAFSADRVYELAESLR 189
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R + ++V G+L P TR Q + S E LVA+DAIGMGLNL+++ + F+ + K
Sbjct: 190 -RLRGGVAVVLGALSPRTRNAQVAMYQ--SGEVQYLVATDAIGMGLNLDLNHVAFAALSK 246
Query: 320 FDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 355
FDG + R+L E+ QIAGRAGR+ + G + L
Sbjct: 247 FDGADQRELYPDELAQIAGRAGRHLNDGSFGTLNTL 282
>gi|334345099|ref|YP_004553651.1| helicase domain-containing protein [Sphingobium chlorophenolicum
L-1]
gi|334101721|gb|AEG49145.1| helicase domain-containing protein [Sphingobium chlorophenolicum
L-1]
Length = 891
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 101/285 (35%), Positives = 144/285 (50%), Gaps = 23/285 (8%)
Query: 71 LARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSC 128
AR V V+ GPTN+GKTH A+ R+ SSG+ PLRLLA EV R+ K
Sbjct: 11 FARSPVTAVL---GPTNTGKTHLAVERMCGHSSGMMGFPLRLLAREVYDRVVGMKGPQQV 67
Query: 129 DLITGQEREEVDGAKHRAVTVE----------MADVVSDYDCAVIDEIQMLGCKTRGFSF 178
LITG+E+ GA++ T E + + DY +DE Q+ RG F
Sbjct: 68 ALITGEEKIVPPGARYFLCTAESMPIGGGREPAQESLKDYAFVALDEAQLGADPERGHIF 127
Query: 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQ 238
T LL E + A+ I ++++ D ++ R S L S +
Sbjct: 128 TDRLLRARGREETMILGSAS---IGRLVKALVPDAEIIGRPRFSTLSYAGAK--KLSRLP 182
Query: 239 TGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298
IV FS +Y + + + R + ++V G+L P TR Q F + E D LVA+
Sbjct: 183 KRSAIVAFSAEEVYAVAEMLR-RFRGGAAVVMGALSPRTRNAQVQMF--LNGEVDYLVAT 239
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
DAIGMGLNL+++ + F++++KFDG R LTV E+ QIAGRAGR+
Sbjct: 240 DAIGMGLNLDVAHVAFASLRKFDGRRTRRLTVSEMAQIAGRAGRH 284
>gi|332186925|ref|ZP_08388666.1| helicase conserved C-terminal domain protein [Sphingomonas sp. S17]
gi|332012935|gb|EGI54999.1| helicase conserved C-terminal domain protein [Sphingomonas sp. S17]
Length = 831
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 98/266 (36%), Positives = 141/266 (53%), Gaps = 17/266 (6%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ + SSGI PLRLLA EV R+ K + L+TG+E+
Sbjct: 13 LGPTNTGKTHLAIERMCAHSSGIIGFPLRLLAREVYDRVVALKGADTVALVTGEEKIVPP 72
Query: 141 GAKHRAVTVEMADVVSDYDCAVI--DEIQMLGCKTRGFSFT-RALLGICANELHLCGDPA 197
A+ T E + D D A + DE Q+ RG FT R L +E + G A
Sbjct: 73 DARWFLCTAES---MPDRDVAFVALDEAQLGADLERGHVFTDRLLHARGRDETMILGSEA 129
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
P+I+ ++ D ++ + R S L S + IV FS +Y + +
Sbjct: 130 LKPMIRALVP----DAEIVARPRFSTLTYAGAK--KISRLPKRSAIVAFSAEEVYAVAEM 183
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 317
+ R + ++V G+L P TR Q F + E D LVA+DAIGMGLN++++ + F+ +
Sbjct: 184 LR-RLRGGAAVVMGALSPRTRNAQVEMFQ--AGEVDYLVATDAIGMGLNMDVAHVAFAGL 240
Query: 318 KKFDGVELRDLTVPEVKQIAGRAGRY 343
KFDG R LTV E+ QIAGRAGR+
Sbjct: 241 HKFDGRRRRRLTVAEMAQIAGRAGRH 266
>gi|170742911|ref|YP_001771566.1| helicase domain-containing protein [Methylobacterium sp. 4-46]
gi|168197185|gb|ACA19132.1| helicase domain protein [Methylobacterium sp. 4-46]
Length = 1154
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 107/321 (33%), Positives = 159/321 (49%), Gaps = 23/321 (7%)
Query: 75 KVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDL 130
+ R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV +R+ V+ L
Sbjct: 11 RARGVTAVLGPTNTGKTHLAIERMLAHPTGMIGLPLRLLAREVYHRVVERVGPERVA--L 68
Query: 131 ITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANEL 190
+TG+E+ + D + T E D +DEIQ+ RG +FT LL E
Sbjct: 69 VTGEEKIKPDRPSYWICTAEAMPRDRGVDFVAVDEIQLGADMDRGHTFTDRLLHQRGREE 128
Query: 191 HL-CGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRH 249
L G PL+Q ++ V V + RLS L S + IV FS
Sbjct: 129 TLLIGSGTMGPLVQALIP----GVHVTTRPRLSQLGFAGEK--RLSRLPHRTAIVAFSAE 182
Query: 250 AIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNI 309
+Y + + + R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++
Sbjct: 183 EVYAIAELLR-RQRGGAAVVLGALSPRTRNAQVELYQ--SGDVDYLVATDAIGMGLNLDV 239
Query: 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKS 366
+ F++ +KFDG R L+ E+ QIAGRAGR+ G+ G + E + L
Sbjct: 240 DHVAFASNRKFDGTRFRGLSPAEMAQIAGRAGRHLRDGTFGSTGRCPPFEPEMVEALESH 299
Query: 367 LLEPSPMLESAGLFPNFDLIY 387
EP+ +L+ + N DL +
Sbjct: 300 SFEPTRVLQ----WRNPDLDF 316
>gi|444914509|ref|ZP_21234652.1| ATP-dependent helicase [Cystobacter fuscus DSM 2262]
gi|444714741|gb|ELW55620.1| ATP-dependent helicase [Cystobacter fuscus DSM 2262]
Length = 812
Score = 135 bits (339), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 135/264 (51%), Gaps = 12/264 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQEREEVD 140
+GPTN+GKTH+A+ R+ SGI PLRLLA EV R+ L+TG+E+
Sbjct: 16 LGPTNTGKTHRAIERMLEHDSGIIGLPLRLLAREVYDRVTARVGEGRVALMTGEEKRLPP 75
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAV 199
+ TVE + D +DEIQ+ + RG FT LL E G
Sbjct: 76 RPDYWICTVEAMPLDRSVDFLAVDEIQLAAHRERGHVFTDRLLHARGLRETWFLGADTMR 135
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
P++Q ++ V+ RLS L S ++ +V FS +Y L +++
Sbjct: 136 PMVQALI----PQASVKRATRLSQLRYSGS--HSLKSLPPRSAVVAFSADRVYELAESLR 189
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R + ++V G+L P TR Q + + E LVA+DAIGMGLNL+++ + F+ + K
Sbjct: 190 -RLRGGVAVVLGALSPRTRNAQVAMYQ--AGEVQYLVATDAIGMGLNLDLNHVSFAALSK 246
Query: 320 FDGVELRDLTVPEVKQIAGRAGRY 343
+DG E RDL E+ QIAGRAGR+
Sbjct: 247 YDGAEQRDLFPDELAQIAGRAGRH 270
>gi|383455668|ref|YP_005369657.1| putative helicase [Corallococcus coralloides DSM 2259]
gi|380733411|gb|AFE09413.1| putative helicase [Corallococcus coralloides DSM 2259]
Length = 805
Score = 135 bits (339), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 95/277 (34%), Positives = 139/277 (50%), Gaps = 12/277 (4%)
Query: 82 HVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQEREEV 139
+GPTN+GKT +A+ R+ SGI PLRLLA EV R+ L+TG+E+
Sbjct: 15 ELGPTNTGKTFRAIERMLEHDSGIIGLPLRLLAREVYDRVTAKVGEGRVALMTGEEKRVP 74
Query: 140 DGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAA 198
+ TVE + D +DEIQ+ + RG FT R L E G
Sbjct: 75 PRPDYWICTVEAMPTDREVDFLAVDEIQLAAHRERGHVFTDRLLHARGRKETWFLGADTM 134
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
P++Q ++ ++ RLS L S ++ +V FS +Y L +++
Sbjct: 135 RPMVQALI----PHASMKRAMRLSQL--RYAGRRSLKSLPPRSAVVAFSADRVYELAESL 188
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
R + ++V G+L P TR Q + S E LVA+DAIGMGLNL+++ + F+T+
Sbjct: 189 R-RLRGGVAVVLGALSPRTRNAQVAMYQ--SGEVQYLVATDAIGMGLNLDLNHVAFATLS 245
Query: 319 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 355
K+DG E RDL E+ QIAGRAGR+ + G + L
Sbjct: 246 KYDGAEQRDLYPDELAQIAGRAGRHLNDGSFGALNTL 282
>gi|260434067|ref|ZP_05788038.1| MgpS [Silicibacter lacuscaerulensis ITI-1157]
gi|260417895|gb|EEX11154.1| MgpS [Silicibacter lacuscaerulensis ITI-1157]
Length = 936
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 101/286 (35%), Positives = 144/286 (50%), Gaps = 17/286 (5%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQE 135
+++ +GPTN+GKTH A+ R+ +G+ PLRLLA EV ++ + L+TG+E
Sbjct: 6 RIVAVLGPTNTGKTHYAIERMLGHRTGVIGLPLRLLAREVYDKIVAIRGPSVVALVTGEE 65
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE--LHLC 193
R A++ TVE D IDEIQ+ RG FT LL + L L
Sbjct: 66 RIVPPRAQYWVCTVEAMPEGMGTDFVAIDEIQLCTDPERGHVFTDRLLRMRGTHETLFLG 125
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
D P+ + Q + ER+S LV S + IV FS +Y
Sbjct: 126 ADTMRGPIAALVPQA-----QFARRERMSQLVYTGSK--KISRMPPRSAIVGFSVENVYA 178
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + + R K ++V G+L P TR Q + + E D LVA+DAIGMGLNL+++ +
Sbjct: 179 IAELLR-RQKGGAAVVMGALSPRTRNAQVALYQNG--EVDYLVATDAIGMGLNLDVNHVA 235
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLD 356
FS++ KFDG +R L E+ QIAGRAGR G+ GE + LD
Sbjct: 236 FSSLSKFDGRRMRPLAPNELAQIAGRAGRGMSDGTFGVTGEASPLD 281
>gi|114769352|ref|ZP_01446978.1| helicase, putative [Rhodobacterales bacterium HTCC2255]
gi|114550269|gb|EAU53150.1| helicase, putative [Rhodobacterales bacterium HTCC2255]
Length = 881
Score = 134 bits (338), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 152/299 (50%), Gaps = 15/299 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ + +SGI PLRLLA EV ++ + S L+TG+ER
Sbjct: 12 LGPTNTGKTHYAIERMLARNSGIIGLPLRLLAREVYDKVVALRGLSSVALVTGEERIVPV 71
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAV 199
A++ TVE + IDEIQ+ G RG FT LL + + E G
Sbjct: 72 KARYWVCTVEAMPQDIGAEFVAIDEIQLCGDPERGHVFTDRLLNMRGSMETLFLGADTMR 131
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
+I Q++ +V+ R S L S + + IV FS +Y + + +
Sbjct: 132 KVIGQLIP----NVEFIFRSRFSDLEYTGTK--KTSRMPSRSAIVGFSVDNVYAVAELLR 185
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R K ++V G+L P TR Q + + + D LVA+DAIGMGLNL+I+ + FS++ K
Sbjct: 186 -RQKGGAAVVMGALSPRTRNAQVELYQNG--DVDYLVATDAIGMGLNLDINHVAFSSLTK 242
Query: 320 FDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 375
FDG +R L E+ QIAGRAGR+ G+ GE LD E + + P L+
Sbjct: 243 FDGRRMRYLMPNELAQIAGRAGRHLNSGTFGVTGEAPKLDQEVVEAIENHKFAPLKKLQ 301
>gi|255261360|ref|ZP_05340702.1| MgpS [Thalassiobium sp. R2A62]
gi|255103695|gb|EET46369.1| MgpS [Thalassiobium sp. R2A62]
Length = 923
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 105/289 (36%), Positives = 147/289 (50%), Gaps = 21/289 (7%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQE 135
+++ +GPTN+GKTH A+ R+ SGI PLRLLA EV ++ + LITG+E
Sbjct: 4 RIVAVLGPTNTGKTHYAIERMLGHRSGIMGLPLRLLAREVYDKIVAVRGPSVVALITGEE 63
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH---- 191
R + A + TVE D IDEIQ+ + RG FT LL A LH
Sbjct: 64 RIVPERAAYWICTVEAMPEGMGADFVGIDEIQLCSDRERGHVFTDRLL--HARGLHETLF 121
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
+ D + QI +V+ ER+S L S ++ IV FS +
Sbjct: 122 MGADTMRSAIAAQI-----PNVEFVHRERMSELTYTGQK--KISRMRERSAIVGFSVDNV 174
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + ++ R K ++V G+L P TR Q + + + D LVA+DAIGMGLNL+I
Sbjct: 175 YAIAELLK-RQKGGAAVVMGALSPRTRNAQVELYQNG--DVDYLVATDAIGMGLNLDIDH 231
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGR---YGSKFPVGEVTCLDS 357
+ FS ++KFDG ++R L E+ QIAGRAGR G+ GE LD
Sbjct: 232 VAFSGLQKFDGRKMRYLMPNELAQIAGRAGRGMSNGTFGVTGEAPALDQ 280
>gi|188584090|ref|YP_001927535.1| helicase domain-containing protein [Methylobacterium populi BJ001]
gi|179347588|gb|ACB83000.1| helicase domain protein [Methylobacterium populi BJ001]
Length = 1138
Score = 134 bits (338), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 108/319 (33%), Positives = 157/319 (49%), Gaps = 19/319 (5%)
Query: 75 KVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL-NKANV-SCDLIT 132
+ R V +GPTN+GKTH A+ R+ +G+ PLRLLA EV R+ K V + L+T
Sbjct: 11 RARGVTAVLGPTNTGKTHMAIERMLLHPTGMIGLPLRLLAREVYLRVVAKVGVENVALVT 70
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELH 191
G+E+ + D ++ T+E + IDEIQ+ RG FT R L E
Sbjct: 71 GEEKIKPDRPRYWICTIEAMPRDLEVAFVAIDEIQLAADMDRGHVFTDRLLYRRGREETL 130
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G +PL+Q ++ V+ + RLS L S + IV FS +
Sbjct: 131 LIGSATMLPLVQALIP----GVQTTTRPRLSSLSFAGEK--KISRLPHRTAIVAFSAEEV 184
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + S + D LVA+DA+GMGLNL++
Sbjct: 185 YAIAELIR-RQRGGAAVVLGALSPRTRNAQVELYQ--SGDVDYLVATDAVGMGLNLDVDH 241
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLL 368
+ F+ K+DG R LT E+ QIAGRAGR+ G+ G + E + L
Sbjct: 242 VAFAANWKYDGTRFRKLTPAEMGQIAGRAGRHTSDGTFGSTGRCPPFEPEMVEALETHDF 301
Query: 369 EPSPMLESAGLFPNFDLIY 387
EP ML+ + N DL +
Sbjct: 302 EPVRMLQ----WRNPDLDF 316
>gi|408376344|ref|ZP_11173949.1| ATP-dependent helicase [Agrobacterium albertimagni AOL15]
gi|407749811|gb|EKF61322.1| ATP-dependent helicase [Agrobacterium albertimagni AOL15]
Length = 1012
Score = 134 bits (337), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 146/290 (50%), Gaps = 19/290 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ + SGI PLRLLA EV +R+ NV+ L+T
Sbjct: 6 RGVNAVLGPTNTGKTHFAIERMVAHGSGIIGLPLRLLAREVYTRVVERVGAQNVA--LVT 63
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ A+ TVE + IDEIQ+ G RG FT LL + E
Sbjct: 64 GEEKISPPKARFSVCTVEAMPRETKAAFVAIDEIQLAGDLERGHIFTDRLLHLRGREETL 123
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G ++ Q+L + + RLS L + + IV FS +
Sbjct: 124 LLGSSTMKSILIQLLP----GITIVERPRLSQL--FYAGQKKITRLPQRAAIVAFSADEV 177
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R + ++V G+L P TR Q + + E+ LVA+DAIGMGLNL++
Sbjct: 178 YAIAELIR-RQRGGAAVVLGALSPRTRNAQVGLYQEGDVEY--LVATDAIGMGLNLDVDH 234
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ F+ +KFDG + R+L E+ QIAGRAGR+ G+ G V D E
Sbjct: 235 VAFAQDRKFDGYQFRNLNPGELGQIAGRAGRHIKDGTFGVTGRVAPFDEE 284
>gi|442319534|ref|YP_007359555.1| helicase [Myxococcus stipitatus DSM 14675]
gi|441487176|gb|AGC43871.1| helicase [Myxococcus stipitatus DSM 14675]
Length = 799
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 95/289 (32%), Positives = 144/289 (49%), Gaps = 17/289 (5%)
Query: 79 VILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQER 136
V+ +GPTN+GKTH+A+ R+ +G+ PLRLLA EV R+ L+TG+E+
Sbjct: 12 VVAELGPTNTGKTHRAIERMLEHDTGMMGLPLRLLAREVYDRVTARVGEGRVALMTGEEK 71
Query: 137 EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGD 195
+ TVE + D +DEIQ+ + RG FT R L E G
Sbjct: 72 RLPPRPDYWICTVEAMPLDRAVDFLAVDEIQLAAHRERGHVFTDRLLHARGRKETWFLGA 131
Query: 196 PAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLK 255
P++Q ++ ++ RLS L S ++ +V FS +Y L
Sbjct: 132 DTMRPMVQSLI----PHASLKRANRLSQL--RYTGRKSLKSLPPRSAVVAFSADRVYELA 185
Query: 256 KAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFS 315
+++ R + ++V G+L P TR Q + + E LVA+DAIGMGLNL+++ + F+
Sbjct: 186 ESLR-RLRGGVAVVLGALSPRTRNAQVAMYQ--AGEVQYLVATDAIGMGLNLDLNHVAFA 242
Query: 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLH 364
+ K+DG E R+L E+ QIAGRAGR+ + G + LP LH
Sbjct: 243 ALSKYDGAEQRELFSDELAQIAGRAGRHLNDGSFGMLNT-----LPELH 286
>gi|393720050|ref|ZP_10339977.1| helicase domain-containing protein [Sphingomonas echinoides ATCC
14820]
Length = 844
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 93/264 (35%), Positives = 136/264 (51%), Gaps = 12/264 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ SSG+ PLRLLA EV R+ K LITG+E+
Sbjct: 18 LGPTNTGKTHLAVERMCGHSSGMIGFPLRLLAREVYDRVVKLKGETRVALITGEEKIVPK 77
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAV 199
A+ T E + D +DE Q+ RG FT R L E L G A
Sbjct: 78 DARWFLCTAESMPLDKDLAFVALDEAQLGADPERGHVFTDRILRARGREETMLLGSEALR 137
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
P+++ ++ +++ + R S L S + IV FS +Y + + +
Sbjct: 138 PMLKALVP----KIEIINRPRFSTLTYAGAK--KISRLPKRSAIVAFSAEEVYAVAEMLR 191
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R + ++V G+L P TR Q F + E D LVA+DAIGMGLN++++ + F+++ K
Sbjct: 192 -RLRGGAAVVMGALSPRTRNAQVAMFQ--AGEVDYLVATDAIGMGLNMDVAHVAFASLNK 248
Query: 320 FDGVELRDLTVPEVKQIAGRAGRY 343
FDG R L + E+ QIAGRAGR+
Sbjct: 249 FDGHRQRRLRIAEMAQIAGRAGRH 272
>gi|405356476|ref|ZP_11025445.1| ATP-dependent DNA helicase [Chondromyces apiculatus DSM 436]
gi|397090520|gb|EJJ21375.1| ATP-dependent DNA helicase [Myxococcus sp. (contaminant ex DSM
436)]
Length = 815
Score = 134 bits (337), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 96/280 (34%), Positives = 140/280 (50%), Gaps = 12/280 (4%)
Query: 79 VILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQER 136
V+ +GPTN+GKT++A+ R+ SGI PLRLLA EV R+ L+TG+E+
Sbjct: 12 VVAELGPTNTGKTYRAIERMLEHGSGIMGFPLRLLAREVYDRVTARVGEGRVALMTGEEK 71
Query: 137 EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGD 195
+ TVE D +DEIQ+ + RG FT R L E G
Sbjct: 72 RLPPRPDYWICTVEAMPTDRVADFVAVDEIQLAAHRERGHVFTDRLLHARGRKETWFLGA 131
Query: 196 PAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLK 255
P++Q ++ V+ RLS L S ++ +V FS +Y L
Sbjct: 132 DTMRPMLQTLIP----HASVKRATRLSQL--RYSGHRSLKSLPPRSAVVAFSADRVYELA 185
Query: 256 KAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFS 315
+++ R + ++V G+L P TR Q + S E LVA+DAIGMGLNL+++ + F+
Sbjct: 186 ESLR-RLRGGVAVVLGALSPRTRNAQVAMYQ--SGEVQYLVATDAIGMGLNLDLNHVAFA 242
Query: 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 355
+ K+DG E RDL E+ QIAGRAGR+ + G + L
Sbjct: 243 GLSKYDGAEQRDLFPDELAQIAGRAGRHLNDGSFGTLNTL 282
>gi|299132818|ref|ZP_07026013.1| helicase domain protein [Afipia sp. 1NLS2]
gi|298592955|gb|EFI53155.1| helicase domain protein [Afipia sp. 1NLS2]
Length = 1061
Score = 134 bits (336), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/264 (38%), Positives = 140/264 (53%), Gaps = 14/264 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD---LITGQEREEV 139
+GPTN+GKTH A+ R+ + SSG+ PLRLLA EV ++ A V D LITG+E+ +
Sbjct: 2 LGPTNTGKTHLAIERMLAHSSGMIGLPLRLLAREVYNKI-AARVGADSVALITGEEKIKP 60
Query: 140 DGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAA 198
A++ TVE D +DEIQ+ RG FT R L +E L G
Sbjct: 61 PKARYWVSTVEAMPRDLDVSFLAVDEIQIAADLERGHVFTDRMLHRRGRDETLLLGAATM 120
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
PLI+++L + + RLS L + +T IV FS +Y + + I
Sbjct: 121 RPLIERLLP----GANIVTRPRLSLLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELI 174
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
R ++V GSL P TR Q F S + D LVA+DA+GMGLNL++ + F++ +
Sbjct: 175 R-RQHGGAAVVLGSLSPRTRNAQVEMFQ--SGDVDYLVATDAVGMGLNLDVDHVAFASDR 231
Query: 319 KFDGVELRDLTVPEVKQIAGRAGR 342
K+DG + R LT E QIAGRAGR
Sbjct: 232 KYDGYQFRRLTPAEFAQIAGRAGR 255
>gi|86137860|ref|ZP_01056436.1| helicase, putative [Roseobacter sp. MED193]
gi|85825452|gb|EAQ45651.1| helicase, putative [Roseobacter sp. MED193]
Length = 980
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/288 (37%), Positives = 145/288 (50%), Gaps = 17/288 (5%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQE 135
+V+ +GPTN+GKTH A+ R+ +GI PLRLLA EV ++ + L+TG+E
Sbjct: 6 RVLAVLGPTNTGKTHYAIERMLGYRTGIMGFPLRLLAREVYDKIVAIRGPSVVALVTGEE 65
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI-CANE-LHLC 193
R AK+ TVE D IDEIQ+ RG FT LL NE L L
Sbjct: 66 RIVPPRAKYWICTVEAMPPGMGCDFLAIDEIQLCADPERGHVFTERLLNSRGTNETLFLG 125
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
D P+ + +V+ ER+S LV S + IV FS +Y
Sbjct: 126 ADTMRGPIKALV-----PEVEFLRRERMSELVYGGSK--KISRMPPRTAIVGFSVDNVYA 178
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + ++ R K ++V G+L P TR Q + + E D LVA+DAIGMGLNL+I +
Sbjct: 179 IAELLK-RQKGGAAVVMGALSPRTRNAQVALYQNG--EVDYLVATDAIGMGLNLDIDHVA 235
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGR---YGSKFPVGEVTCLDSE 358
FS KFDG +R L E+ QIAGRAGR +GS G+ L+ E
Sbjct: 236 FSATSKFDGRRMRPLAPNELAQIAGRAGRGMSHGSFGVTGDARPLEDE 283
>gi|402850589|ref|ZP_10898784.1| ATP-dependent DNA Helicase [Rhodovulum sp. PH10]
gi|402499194|gb|EJW10911.1| ATP-dependent DNA Helicase [Rhodovulum sp. PH10]
Length = 1147
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 108/301 (35%), Positives = 150/301 (49%), Gaps = 19/301 (6%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLITGQEREE 138
+GPTN+GKTH A+ R+ SSGI PLRLLA EV R+ V+ LITG+E+ +
Sbjct: 2 LGPTNTGKTHLAIERMLGHSSGIIGLPLRLLAREVYNKVVDRVGPDQVA--LITGEEKIK 59
Query: 139 VDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAA 198
+ TVE D +DE+Q+ RG FT +L E L A
Sbjct: 60 PQNPRFWVSTVEAMPRDLDVAFVAVDEVQLGADFERGHVFTDRILNRRGREETLVLGAAT 119
Query: 199 V-PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
V P+I+++L V S RLS L S +T IV FS +Y + +
Sbjct: 120 VRPMIEKLLP----GANVISRPRLSQLTFAGEKKLSRQPRRT--AIVAFSAEEVYAIAEL 173
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 317
I R + ++V G+L P TR Q + S + D LVA+DAIGMGLNL++ + F +
Sbjct: 174 IR-RQRGGAAVVLGALSPRTRNAQVALYQ--SGDVDYLVATDAIGMGLNLDVDHVAFGSE 230
Query: 318 KKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPML 374
+KFDG + R LT E QIAGRAGR+ G+ G T + + + L EP +L
Sbjct: 231 RKFDGYQYRRLTPAEFGQIAGRAGRHSRDGTFGTTGRCTPFEPDLVHALESHSFEPIKVL 290
Query: 375 E 375
+
Sbjct: 291 Q 291
>gi|84687446|ref|ZP_01015324.1| helicase, putative [Maritimibacter alkaliphilus HTCC2654]
gi|84664604|gb|EAQ11090.1| helicase, putative [Rhodobacterales bacterium HTCC2654]
Length = 919
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 139/282 (49%), Gaps = 15/282 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ + +G+ PLRLLA EV R+ + L+TG+ER +
Sbjct: 8 LGPTNTGKTHYAIERMLAHRTGVIGLPLRLLAREVYDRIVALRGPSVVALVTGEERIVPE 67
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAV 199
++ TVE D IDEIQ+ RG FT LL +E G
Sbjct: 68 RTQYWVCTVEAMPEGLGADFVAIDEIQLCADPERGHVFTERLLNARGLHETLFMGSDTMR 127
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
I ++ V+ ER S L S + IV FS +Y L + +
Sbjct: 128 GAIAALVP----KVQFMRRERFSSLTYAGSK--KISRMPGRSAIVGFSVDNLYALAELMR 181
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R K ++V G+L P TR Q + + + D LVA+DAIGMGLNL+++ + FS + K
Sbjct: 182 -RQKGGVAVVMGALSPRTRNAQVAMYQNG--DVDYLVATDAIGMGLNLDVNHVAFSALSK 238
Query: 320 FDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
FDG +R L E+ QIAGRAGRY GS GE L+ E
Sbjct: 239 FDGRRMRGLAPNELAQIAGRAGRYMSDGSFGVTGEAQPLEDE 280
>gi|332557856|ref|ZP_08412178.1| MgpS [Rhodobacter sphaeroides WS8N]
gi|332275568|gb|EGJ20883.1| MgpS [Rhodobacter sphaeroides WS8N]
Length = 962
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/287 (35%), Positives = 142/287 (49%), Gaps = 17/287 (5%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQE 135
+V +GPTN+GKTH A+ R+ +G+ PLRLLA EV R+ + L+TG+E
Sbjct: 6 RVTAVLGPTNTGKTHYAIERMLGHRTGVIGLPLRLLAREVYDRIVAQRGPSVVALVTGEE 65
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI--CANELHLC 193
R + ++ TVE + D +DEIQ+ G RG FT LL + L
Sbjct: 66 RIVPERTQYWVCTVEAMPMEIGADFVAVDEIQLCGDPERGHVFTDRLLRARGLVETMFLG 125
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
D +++ + V ER S L S + IV FS +Y
Sbjct: 126 SD-----VMRGAIAALVPHVTFLRRERFSTLTYAGSK--KISRMPPRSAIVGFSVDNVYA 178
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R K C++V G+L P TR Q + + + D LVA+DAIGMGLNL+I +
Sbjct: 179 IAELIR-RQKGGCAVVMGALSPRTRNAQVALYQNG--DVDYLVATDAIGMGLNLDIRHVA 235
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDS 357
FS+ KFDG +R L E+ QIAGRAGR+ G+ GE + LD
Sbjct: 236 FSSTVKFDGRRMRPLFPHELGQIAGRAGRHTEAGTFGVTGEASPLDE 282
>gi|254441763|ref|ZP_05055256.1| Helicase conserved C-terminal domain protein [Octadecabacter
antarcticus 307]
gi|198251841|gb|EDY76156.1| Helicase conserved C-terminal domain protein [Octadecabacter
antarcticus 307]
Length = 971
Score = 133 bits (335), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 108/304 (35%), Positives = 152/304 (50%), Gaps = 15/304 (4%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQE 135
+VI +GPTN+GKTH A+ R+ + +G+ PLRLLA EV R+ + L+TG+E
Sbjct: 10 RVIAVLGPTNTGKTHYAIERMLAHRTGVIGLPLRLLAREVYDRIVAVRGPSVVALVTGEE 69
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCG 194
R AK+ TVE D IDEIQ+ RG FT LL + +E G
Sbjct: 70 RIVPPRAKYWVCTVEAMPQDIGADFVAIDEIQLCADLDRGHVFTDRLLRMRGLHETLFMG 129
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
I ++ D VK ER S L S + IV FS +Y +
Sbjct: 130 AETMWGAIASMVP-EADFVK---RERFSTLTYTGSK--KISRMPPRSAIVGFSVENVYAI 183
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ + R K ++V G+L P TR Q + + + D LVA+DAIGMGLNL+I + F
Sbjct: 184 AELLR-RQKGGAAVVMGALSPRTRNAQVEMYQNG--DVDYLVATDAIGMGLNLDIDHVAF 240
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSK--FPV-GEVTCLDSEDLPLLHKSLLEPS 371
S++ K+DG +R L E+ QIAGRAGRY +K F V G+ LD + + + + P
Sbjct: 241 SSITKYDGRRMRHLMPNELAQIAGRAGRYMNKGTFGVTGDAPTLDDDVVQAIQNNQFAPV 300
Query: 372 PMLE 375
L+
Sbjct: 301 KKLQ 304
>gi|429206635|ref|ZP_19197900.1| ATP-dependent DNA helicase [Rhodobacter sp. AKP1]
gi|428190395|gb|EKX58942.1| ATP-dependent DNA helicase [Rhodobacter sp. AKP1]
Length = 955
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 101/287 (35%), Positives = 142/287 (49%), Gaps = 17/287 (5%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQE 135
+V +GPTN+GKTH A+ R+ +G+ PLRLLA EV R+ + L+TG+E
Sbjct: 6 RVTAVLGPTNTGKTHYAIERMLGHRTGVIGLPLRLLAREVYDRIVAQRGPSVVALVTGEE 65
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI--CANELHLC 193
R + ++ TVE + D +DEIQ+ G RG FT LL + L
Sbjct: 66 RIVPERTQYWVCTVEAMPMEIGADFVAVDEIQLCGDPERGHVFTDRLLRARGLVETMFLG 125
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
D +++ + V ER S L S + IV FS +Y
Sbjct: 126 SD-----VMRGAIAALVPHVTFLRRERFSTLTYAGSK--KISRMPPRSAIVGFSVDNVYA 178
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R K C++V G+L P TR Q + + + D LVA+DAIGMGLNL+I +
Sbjct: 179 IAELIR-RQKGGCAVVMGALSPRTRNAQVALYQNG--DVDYLVATDAIGMGLNLDIRHVA 235
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDS 357
FS+ KFDG +R L E+ QIAGRAGR+ G+ GE + LD
Sbjct: 236 FSSTVKFDGRRMRPLFPHELGQIAGRAGRHTEAGTFGVTGEASPLDE 282
>gi|383643823|ref|ZP_09956229.1| helicase domain-containing protein [Sphingomonas elodea ATCC 31461]
Length = 825
Score = 133 bits (334), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 107/323 (33%), Positives = 154/323 (47%), Gaps = 29/323 (8%)
Query: 71 LARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSC 128
AR V V+ GPTN+GKTH A+ R+ +SG+ PLRLLA EV R+ K
Sbjct: 4 FARSPVTAVL---GPTNTGKTHLAVERMCGHASGMIGFPLRLLAREVYDRVVRMKGPAEV 60
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICA 187
LITG+E+ A+ T E + + +DE Q+ RG FT R L
Sbjct: 61 ALITGEEKILPPKARWFCCTAESMPLERETAFVALDEAQLGADPERGHVFTDRLLRARGR 120
Query: 188 NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFS 247
E L G + P+++ ++ + +V R S L S + IV FS
Sbjct: 121 EETMLLGSDSLRPMLKALVP----EAEVVGRPRFSTLSYAGAK--KLSRLPRRSAIVAFS 174
Query: 248 RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307
+Y + +A+ R + ++V G+L P TR Q F + E D LVA+DAIGMGLN+
Sbjct: 175 AEEVYAVAEALR-RLRGGAAVVMGALSPRTRNAQVAMFQ--AGEVDYLVATDAIGMGLNM 231
Query: 308 NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG-------------SKFPVGEVTC 354
++ + F+++ KFDG R LT+ E+ QIAGRAGR+ S F EV
Sbjct: 232 DVHHVAFASLHKFDGRRQRRLTIAEMAQIAGRAGRHQKDGTFGALHAEGPSAFTPEEVLA 291
Query: 355 LDSEDLPLL-HKSLLEPSPMLES 376
++ +P L H E P +S
Sbjct: 292 IEGHQVPRLEHLYWREGQPDFDS 314
>gi|393765522|ref|ZP_10354084.1| helicase domain-containing protein [Methylobacterium sp. GXF4]
gi|392729104|gb|EIZ86407.1| helicase domain-containing protein [Methylobacterium sp. GXF4]
Length = 1103
Score = 133 bits (334), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 139/265 (52%), Gaps = 14/265 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD---LITGQEREEV 139
+GPTN+GKTH A+ R+ + +G+ PLRLLA EV R+ A V + L+TG+E+ +
Sbjct: 5 LGPTNTGKTHLAIERMLAHPTGMIGLPLRLLAREVYLRV-VAKVGPEKVALVTGEEKIKP 63
Query: 140 DGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAA 198
D ++ T+E D IDEIQ+ RG FT LL + E L G
Sbjct: 64 DRPRYWICTIEAMPRDLDVAYVAIDEIQLAADMDRGHVFTDRLLYVRGREETLLIGSSTM 123
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
+PL+Q ++ +V + RLS L S + IV FS +Y + + I
Sbjct: 124 LPLVQGLIP----NVHTTTRPRLSKLSFAGEK--RLSRLPRRTAIVAFSAEEVYAIAELI 177
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
R + ++V G+L P TR Q + + + D LVA+DA+GMGLNL++ + F+
Sbjct: 178 R-RQRGGAAVVLGALSPRTRNAQVEMYQ--AGDVDYLVATDAVGMGLNLDVDHVAFAANW 234
Query: 319 KFDGVELRDLTVPEVKQIAGRAGRY 343
K+DG R LT E+ QIAGRAGR+
Sbjct: 235 KYDGTRFRKLTPAEMGQIAGRAGRH 259
>gi|56696301|ref|YP_166658.1| helicase [Ruegeria pomeroyi DSS-3]
gi|56678038|gb|AAV94704.1| helicase, putative [Ruegeria pomeroyi DSS-3]
Length = 959
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 102/288 (35%), Positives = 142/288 (49%), Gaps = 21/288 (7%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQE 135
+++ +GPTN+GKTH A+ R+ +G+ PLRLLA EV ++ + L+TG+E
Sbjct: 6 RIVAVLGPTNTGKTHYAIERMLGHRTGVIGLPLRLLAREVYDKIVALRGPSVVALVTGEE 65
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH---- 191
R ++ TVE DC +DEIQ+ RG FT LL A LH
Sbjct: 66 RIVPPRTQYWVCTVEAMPEGLGADCVAVDEIQLCADPERGHVFTDRLL--RARGLHETLL 123
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L D P+ + + + ER+S LV + + IV FS +
Sbjct: 124 LGSDTMRGPIAALV-----PEAQFVRRERMSQLVYTGSK--KITRMPPRSAIVGFSVENV 176
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R K ++V G+L P TR Q + + E D LVA+DAIGMGLNL+I
Sbjct: 177 YAIAELIR-RQKGGAAVVMGALSPRTRNAQVDLYQNG--EVDYLVATDAIGMGLNLDIDH 233
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGR---YGSKFPVGEVTCLD 356
+ FS + KFDG +R L E+ QIAGRAGR G+ GE LD
Sbjct: 234 VAFSALSKFDGRRMRPLAPNELAQIAGRAGRGMASGTFGVTGEARPLD 281
>gi|254451167|ref|ZP_05064604.1| helicase, putative [Octadecabacter arcticus 238]
gi|198265573|gb|EDY89843.1| helicase, putative [Octadecabacter arcticus 238]
Length = 951
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 107/299 (35%), Positives = 150/299 (50%), Gaps = 15/299 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ + +G+ PLRLLA EV R+ + L+TG+ER
Sbjct: 1 MGPTNTGKTHYAIERMLAHRTGVIGLPLRLLAREVYDRIVSVRGPSVVALVTGEERIVPP 60
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAV 199
AK+ TVE D IDEIQ+ G RG FT LL + +E G
Sbjct: 61 RAKYWVCTVEAMPQDIGADFVAIDEIQLCGDLDRGHVFTDRLLRMRGLHETLFMGAETMW 120
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
I ++ D VK ER S L S + IV FS +Y + + +
Sbjct: 121 GAIASMVP-EADFVK---RERFSTLTYSGSK--KISRMPPRSAIVGFSVENVYAIAELLR 174
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R K ++V G+L P TR Q + + + D LVA+DAIGMGLNL+I + FS++ K
Sbjct: 175 -RQKGGAAVVMGALSPRTRNAQVEMYQNG--DVDYLVATDAIGMGLNLDIDHVAFSSITK 231
Query: 320 FDGVELRDLTVPEVKQIAGRAGRYGSK--FPV-GEVTCLDSEDLPLLHKSLLEPSPMLE 375
+DG +R L E+ QIAGRAGR+ +K F V GE LD + + + + P L+
Sbjct: 232 YDGRRMRHLMPNELAQIAGRAGRFMNKGTFGVTGEAPTLDDDVVQAIQNNQFAPVKKLQ 290
>gi|39933568|ref|NP_945844.1| MgpS ATP-dependent helicase [Rhodopseudomonas palustris CGA009]
gi|39647414|emb|CAE25935.1| possible MgpS, ATP-dependent helicase [Rhodopseudomonas palustris
CGA009]
Length = 1093
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 104/299 (34%), Positives = 150/299 (50%), Gaps = 15/299 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL-NKANVSC-DLITGQEREEVD 140
+GPTN+GKTH A+ R+ + SG+ PLRLLA EV ++ +K + L+TG+E+ +
Sbjct: 23 LGPTNTGKTHLAIERMVAHPSGLIGLPLRLLAREVYNKIVDKVGANAVALVTGEEKIKPS 82
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAV 199
++ TVE D +DEIQ+ RG FT R L +E L G
Sbjct: 83 KPRYWVSTVEAMPRDLDVSFLAVDEIQIAADLERGHVFTDRILRRRGRDETLLLGAATMR 142
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
P+IQ++L + + RLS L + +T IV FS +Y + + I+
Sbjct: 143 PMIQRLLP----GASIVTRPRLSQLEYAGDRKLTRQPRRT--AIVAFSADEVYAIAELIK 196
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R ++V GSL P TR Q F S + D L+A+DAIGMGLNL++ + F++ +K
Sbjct: 197 -RQHGGAAVVLGSLSPRTRNAQVAMFQ--SGDVDYLIATDAIGMGLNLDVDHVAFASDRK 253
Query: 320 FDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 375
FDG + R LT E QI GRAGR G+ G + E + L EP ML+
Sbjct: 254 FDGYQFRRLTPAEFAQIGGRAGRATRDGTFGTTGRCAPFEPELVNALQNHSFEPVKMLQ 312
>gi|221638836|ref|YP_002525098.1| MgpS protein [Rhodobacter sphaeroides KD131]
gi|221159617|gb|ACM00597.1| MgpS [Rhodobacter sphaeroides KD131]
Length = 956
Score = 132 bits (333), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 100/282 (35%), Positives = 140/282 (49%), Gaps = 17/282 (6%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ +G+ PLRLLA EV R+ + L+TG+ER +
Sbjct: 5 LGPTNTGKTHYAIERMLGHRTGVIGLPLRLLAREVYDRIVAQRGPSVVALVTGEERIVPE 64
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI--CANELHLCGDPAA 198
++ TVE + D +DEIQ+ G RG FT LL + L D
Sbjct: 65 RTQYWVCTVEAMPMEIGADFVAVDEIQLCGDPERGHVFTDRLLRARGLVETMFLGSD--- 121
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
+++ + V ER S L S + IV FS +Y + + I
Sbjct: 122 --VMRGAIAALVPHVTFLRRERFSTLTYAGSK--KISRMPPRSAIVGFSVDNVYAIAELI 177
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
R K C++V G+L P TR Q + + + D LVA+DAIGMGLNL+I + FS+
Sbjct: 178 R-RQKGGCAVVMGALSPRTRNAQVALYQNG--DVDYLVATDAIGMGLNLDIRHVAFSSTV 234
Query: 319 KFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDS 357
KFDG +R L E+ QIAGRAGR+ G+ GE + LD
Sbjct: 235 KFDGRRMRPLFPHELGQIAGRAGRHTEAGTFGVTGEASPLDE 276
>gi|384919755|ref|ZP_10019792.1| helicase-like protein [Citreicella sp. 357]
gi|384466357|gb|EIE50865.1| helicase-like protein [Citreicella sp. 357]
Length = 994
Score = 132 bits (333), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 100/263 (38%), Positives = 135/263 (51%), Gaps = 12/263 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVS--CDLITGQEREEVD 140
+GPTN+GKTH A+ R+ +G+ PLRLLA EV ++ A L+TG+ER
Sbjct: 11 LGPTNTGKTHYAIERMLGHRTGMIGLPLRLLAREVYDKIVAARGPSVVALVTGEERIVPP 70
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAV 199
A++ TVE D IDEIQ+ RG FT LL + +E G
Sbjct: 71 RAQYWVCTVEAMPEGMGVDFIGIDEIQLCADPERGHVFTDRLLRMRGLHETLFMGSDTMR 130
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
I Q+++ V+ ER+S L L S + IV FS +Y + + I
Sbjct: 131 GPISQLVR----GVEFIRRERMSQLSYLGSK--KISRMPARSAIVGFSVDNVYAIAELIR 184
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R K ++V G+L P TR Q + + + D LVA+DAIGMGLNL+I I FS + K
Sbjct: 185 -RTKGGAAVVMGALSPRTRNAQVDLYQNG--DVDYLVATDAIGMGLNLDIDHIAFSALTK 241
Query: 320 FDGVELRDLTVPEVKQIAGRAGR 342
FDG +RDL E+ QIAGRAGR
Sbjct: 242 FDGRRMRDLQPNELAQIAGRAGR 264
>gi|381201266|ref|ZP_09908395.1| putative helicase [Sphingobium yanoikuyae XLDN2-5]
Length = 981
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 150/304 (49%), Gaps = 30/304 (9%)
Query: 71 LARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSC 128
AR V V+ GPTN+GKTH A+ R+ SSG+ PLRLLA EV R+ K
Sbjct: 4 FARSPVTAVL---GPTNTGKTHLAVERMCGHSSGMMGFPLRLLAREVYDRVVAIKGAQQV 60
Query: 129 DLITGQEREEVDGAKHRAVTVE------------MADVVSDYDCAVIDEIQMLGCKTRGF 176
LITG+E+ GA++ T E M +SD+ +DE Q+ RG
Sbjct: 61 ALITGEEKIVPPGARYFLCTAESMPISGGREAAAMTGGLSDFAFVALDEAQLGADPERGH 120
Query: 177 SFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFS 235
FT R L E + G + ++ ++ +V++ R S L S
Sbjct: 121 IFTDRILRARGREETMILGSASIAKTVKSLVP----EVEIIGRPRFSTLSYAGAK--KLS 174
Query: 236 NIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295
+ IV FS +Y + + + R + ++V G+L P TR Q F + + D L
Sbjct: 175 RLPRRSAIVAFSAEEVYAVAEMLR-RFRGGAAVVMGALSPRTRNAQVQMF--LNGDVDYL 231
Query: 296 VASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCL 355
VA+DAIGMGLNL+++ + F++++KFDG R LTV E+ QIAGRAGR+ G L
Sbjct: 232 VATDAIGMGLNLDVAHVAFASLRKFDGRRSRRLTVAEMAQIAGRAGRHHKD---GTFGSL 288
Query: 356 DSED 359
SED
Sbjct: 289 GSED 292
>gi|89055802|ref|YP_511253.1| helicase-like protein [Jannaschia sp. CCS1]
gi|88865351|gb|ABD56228.1| helicase-like protein [Jannaschia sp. CCS1]
Length = 978
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 103/284 (36%), Positives = 142/284 (50%), Gaps = 13/284 (4%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQE 135
+V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV ++ K L+TG+E
Sbjct: 9 RVAAILGPTNTGKTHYAIERMLAHRTGVIGLPLRLLAREVYDKVVAIKGPSVVALVTGEE 68
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGD 195
R A + TVE S D +DEIQ+ RG FT LL A LH
Sbjct: 69 RIVPPRAAYWVCTVEAMPTASGADFLAVDEIQLCADPERGHVFTDRLL--HARGLHETLF 126
Query: 196 PAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLK 255
A + I ++ + +R S LV S I IV FS +Y
Sbjct: 127 MGASTMRNAIAELV-PHCEFMHRDRFSQLVYAGSK--KMSRIPGRSAIVGFSVENLYATA 183
Query: 256 KAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFS 315
+ + R K ++V G+L P TR Q + + + D+LVA+DAIGMGLNL+I + FS
Sbjct: 184 ELLR-RTKGGAAVVMGALSPRTRNAQVELYQNG--DVDILVATDAIGMGLNLDIKHVAFS 240
Query: 316 TMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLD 356
+KFDG ++R+L E+ QIAGRAGR+ GS GE D
Sbjct: 241 GTRKFDGRKMRELWPNELAQIAGRAGRHTQDGSFGVTGEAEPFD 284
>gi|427410852|ref|ZP_18901054.1| hypothetical protein HMPREF9718_03528 [Sphingobium yanoikuyae ATCC
51230]
gi|425710840|gb|EKU73860.1| hypothetical protein HMPREF9718_03528 [Sphingobium yanoikuyae ATCC
51230]
Length = 981
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 101/292 (34%), Positives = 146/292 (50%), Gaps = 27/292 (9%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ SSG+ PLRLLA EV R+ K LITG+E+
Sbjct: 13 LGPTNTGKTHLAVERMCGHSSGMMGFPLRLLAREVYDRVVAIKGAQQVALITGEEKIVPP 72
Query: 141 GAKHRAVTVE------------MADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICA 187
GA++ T E M +SD+ +DE Q+ RG FT R L
Sbjct: 73 GARYFLCTAESMPISGGREAAAMTGGLSDFAFVALDEAQLGADPERGHIFTDRILRARGR 132
Query: 188 NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFS 247
E + G + ++ ++ +V++ R S L S + IV FS
Sbjct: 133 EETMILGSASIAKTVKSLVP----EVEIIGRPRFSTLSYAGAK--KLSRLPRRSAIVAFS 186
Query: 248 RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307
+Y + + + R + ++V G+L P TR Q F + + D LVA+DAIGMGLNL
Sbjct: 187 AEEVYAVAEMLR-RFRGGAAVVMGALSPRTRNAQVQMF--LNGDVDYLVATDAIGMGLNL 243
Query: 308 NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359
+++ + F++++KFDG R LTV E+ QIAGRAGR+ G L SED
Sbjct: 244 DVAHVAFASLRKFDGRRSRRLTVAEMAQIAGRAGRHHKD---GTFGSLGSED 292
>gi|414165035|ref|ZP_11421282.1| hypothetical protein HMPREF9697_03183 [Afipia felis ATCC 53690]
gi|410882815|gb|EKS30655.1| hypothetical protein HMPREF9697_03183 [Afipia felis ATCC 53690]
Length = 1068
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 99/263 (37%), Positives = 138/263 (52%), Gaps = 12/263 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ + SSG+ PLRLLA EV ++ S LITG+E+ +
Sbjct: 2 LGPTNTGKTHLAIERMLAHSSGLIGLPLRLLAREVYNKIVARAGAESVALITGEEKIKPP 61
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAV 199
A++ TVE D +DEIQ+ RG FT R L +E L G
Sbjct: 62 KARYWVSTVEAMPRDLDVSFLAVDEIQIASDLERGHVFTDRILHRRGRDETLLLGAATMR 121
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
PLI+++L + + RLS L + +T IV FS +Y + + I
Sbjct: 122 PLIERLLP----GANIVTRPRLSLLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR 175
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R ++V GSL P TR Q F S + D LVA+DA+GMGLNL++ + F++ +K
Sbjct: 176 -RQHGGAAVVLGSLSPRTRNAQVEMFQ--SGDVDYLVATDAVGMGLNLDVDHVAFASDRK 232
Query: 320 FDGVELRDLTVPEVKQIAGRAGR 342
+DG + R LT E QIAGRAGR
Sbjct: 233 YDGYQFRRLTPAEFAQIAGRAGR 255
>gi|298293649|ref|YP_003695588.1| helicase [Starkeya novella DSM 506]
gi|296930160|gb|ADH90969.1| helicase domain protein [Starkeya novella DSM 506]
Length = 1161
Score = 132 bits (332), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 103/292 (35%), Positives = 146/292 (50%), Gaps = 19/292 (6%)
Query: 75 KVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDL 130
+ R V +GPTN+GKT A+ R+ SSG+ PLRLLA EV +R + NV+ L
Sbjct: 22 RARGVTAVLGPTNTGKTSLAIERMLGHSSGLIGLPLRLLAREVYGKLVERAGEHNVA--L 79
Query: 131 ITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NE 189
ITG+ER + ++ TVE D +DEIQ+ RG FT +L + E
Sbjct: 80 ITGEERIKPANPRYWVSTVEAMPRDLDVAFVALDEIQIAADLDRGHVFTDRMLNLRGREE 139
Query: 190 LHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRH 249
L G PL++++L V + RLS L + + IV FS
Sbjct: 140 TLLLGAATMRPLVEKLLP----GVSILGRPRLSNLTFAGEK--KITRLPRRSAIVAFSAD 193
Query: 250 AIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNI 309
+Y + + I R + ++V G+L P TR Q + + + D LVA+DAIGMGLNL++
Sbjct: 194 EVYAIAELIR-RQRGGAAVVLGALSPRTRNAQVAMYQNG--DVDYLVATDAIGMGLNLDV 250
Query: 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ F+ KFDG + R L E+ QIAGRAGR G+ G T D+E
Sbjct: 251 DHVAFAGDVKFDGWQFRKLNPGELAQIAGRAGRAQRDGTFGTTGRCTPFDAE 302
>gi|381166736|ref|ZP_09875950.1| Superfamily II DNA and RNA helicase [Phaeospirillum molischianum
DSM 120]
gi|380684309|emb|CCG40762.1| Superfamily II DNA and RNA helicase [Phaeospirillum molischianum
DSM 120]
Length = 824
Score = 132 bits (332), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 96/287 (33%), Positives = 147/287 (51%), Gaps = 15/287 (5%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQE 135
+V+ +GPTN+GKTH AL R+ ++G+ PLRLLA E+ R+ + S LITG+E
Sbjct: 9 RVVAVLGPTNTGKTHFALERMLGHTTGMIGFPLRLLAREIYDRIVRLRGAGSVALITGEE 68
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCG 194
R + TVE + IDEIQ+ RG FT LL E G
Sbjct: 69 RIVPAHPRWFVCTVEAMPLDRRVAFLAIDEIQLCADPERGHVFTDRLLHARGEAETAFLG 128
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
PL+++++ +++ + RLS L+ + + +V FS +Y L
Sbjct: 129 ADTIRPLLRRLVP----EIEFVARPRLSNLI--HTGPRKLDRLPPRSVVVAFSASEVYAL 182
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+++ R + ++V G+L P TR Q + + E D +VA+DAIGMGLNL++ + F
Sbjct: 183 AESVR-RARGGVAVVLGALSPRTRNAQVGLYQ--TGEVDYIVATDAIGMGLNLDVDHVAF 239
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+++ KFDG R L E+ QIAGRAGR+ GS + LD++
Sbjct: 240 ASLSKFDGRAPRPLAPAEIAQIAGRAGRHMNDGSFGTTADAGPLDTD 286
>gi|304394149|ref|ZP_07376072.1| putative helicase [Ahrensia sp. R2A130]
gi|303293589|gb|EFL87966.1| putative helicase [Ahrensia sp. R2A130]
Length = 1073
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 106/317 (33%), Positives = 154/317 (48%), Gaps = 19/317 (5%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQ 134
R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV R+ + + L+TG+
Sbjct: 22 RGVTAVLGPTNTGKTHLAIERMLAHPTGMIGLPLRLLAREVYSRVVERVGPEAVALVTGE 81
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI-CANELHLC 193
E+ GA+ TVE D IDE+Q+ RG +FT LL + +E L
Sbjct: 82 EKIRPKGARFIVSTVEAMPPDVDVHFLAIDEVQIATNLDRGHTFTDRLLNLRGTHETMLL 141
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G P ++ +L + + + RLS L + + IV FS +Y
Sbjct: 142 GSAILRPALEALLP----GINIVTRPRLSQL--HYAGSKKITRLPRRSAIVAFSADEVYA 195
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R + ++V GSL P TR Q + S + D LVA+DAIGMGLNL++ +
Sbjct: 196 IAELIR-RQRGAAAVVLGSLSPRTRNAQVELYQ--SGDVDFLVATDAIGMGLNLDVDHVA 252
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEP 370
F+ KFDG R L E QIAGRAGR+ G+ G V + E + L P
Sbjct: 253 FAQDSKFDGYTHRRLKPAEFAQIAGRAGRHLRDGTFGVTGNVDPFEDELVKRLEAHEFPP 312
Query: 371 SPMLESAGLFPNFDLIY 387
+L+ + N DL +
Sbjct: 313 EKLLQ----WRNRDLDF 325
>gi|149916592|ref|ZP_01905106.1| helicase-like protein [Roseobacter sp. AzwK-3b]
gi|149809519|gb|EDM69379.1| helicase-like protein [Roseobacter sp. AzwK-3b]
Length = 958
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 104/287 (36%), Positives = 144/287 (50%), Gaps = 15/287 (5%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN--VSCDLITGQE 135
+ + +GPTN+GKTH A+ R+ +GI PLRLLA EV R+ +A L+TG+E
Sbjct: 6 RTLAVLGPTNTGKTHFAIERMLGYRTGIIGLPLRLLAREVYDRIVRARGPSVVALVTGEE 65
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCG 194
R + ++ TVE D IDEIQ+ RG FT LL + E G
Sbjct: 66 RIVPERTQYWVCTVEAMPEGLGADFVAIDEIQLCADPERGHVFTDRLLRMRGLKETQFLG 125
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
I + V G V+ S ER+S L S + IV FS +Y +
Sbjct: 126 AATMRGAIAAL--VPG--VEFLSRERMSQLAYSGSK--KISKMPARSAIVGFSVDNVYAI 179
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ ++ R K ++V G+L P TR Q + + + D LVA+DAIGMGLNL+I + F
Sbjct: 180 AEVLK-RQKGGAAVVMGALSPRTRNAQVALYQNG--DVDYLVATDAIGMGLNLDIDHVAF 236
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGR---YGSKFPVGEVTCLDSE 358
S++ KFDG +R L E+ QIAGRAGR +G+ GE L E
Sbjct: 237 SSLSKFDGRRMRPLAPNELAQIAGRAGRGMSHGTFGVTGEAPELSDE 283
>gi|393722943|ref|ZP_10342870.1| helicase domain-containing protein [Sphingomonas sp. PAMC 26605]
Length = 838
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 139/276 (50%), Gaps = 12/276 (4%)
Query: 71 LARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSC 128
+ R V +GPTN+GKTH A+ R+ SSG+ PLRLLA EV R+ K
Sbjct: 1 MQRNAEHAVTAVLGPTNTGKTHLAVERMCGHSSGMIGFPLRLLAREVYDRVVKLKGESRV 60
Query: 129 DLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICA 187
LITG+E+ A+ T E + D +DE Q+ RG FT R L
Sbjct: 61 ALITGEEKIVPKDARWFLCTAESMPLDKDLAFVALDEAQLGADPERGHVFTDRILRARGR 120
Query: 188 NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFS 247
E L G + P+++ ++ +++ + R S L S + IV FS
Sbjct: 121 EETMLLGSESLRPMLKALVP----GIEIINRPRFSTLSYAGAK--KISRLPKRSAIVAFS 174
Query: 248 RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307
+Y + + + R + ++V G+L P TR Q F + E D LVA+DAIGMGLN+
Sbjct: 175 AEEVYAVAEMLR-RLRGGAAVVMGALSPRTRNAQVAMFQ--AGEVDYLVATDAIGMGLNM 231
Query: 308 NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
+++ + F+++ KFDG R L V E+ QIAGRAGR+
Sbjct: 232 DVAHVAFASLNKFDGHRQRRLRVAEMAQIAGRAGRH 267
>gi|94497176|ref|ZP_01303748.1| ATP-dependent helicase [Sphingomonas sp. SKA58]
gi|94423281|gb|EAT08310.1| ATP-dependent helicase [Sphingomonas sp. SKA58]
Length = 901
Score = 132 bits (331), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 101/283 (35%), Positives = 143/283 (50%), Gaps = 21/283 (7%)
Query: 71 LARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSC 128
AR V V+ GPTN+GKTH A+ R+ SSG+ PLRLLA EV R+ K
Sbjct: 11 FARAPVTAVL---GPTNTGKTHLAVERMCGHSSGMMGFPLRLLAREVYDRVVAIKGEKLV 67
Query: 129 DLITGQEREEVDGAKHRAVTVEM--------ADVVSDYDCAVIDEIQMLGCKTRGFSFTR 180
L+TG+E+ A++ T E A D+ +DE Q+ RG FT
Sbjct: 68 ALVTGEEKIVPPNARYFLCTAESMPISGSREAGAKEDFAFVALDEAQLGADPERGHIFTD 127
Query: 181 ALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTG 240
LL E + A+ I +I++ DV + S R S L S +
Sbjct: 128 RLLRARGREETMILGSAS---ISRIVKALIPDVDIISRPRFSTLSYAGAK--KLSRLPRR 182
Query: 241 DCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 300
IV FS +Y + + + R + ++V G+L P TR Q F + + D LVA+DA
Sbjct: 183 SAIVAFSAEEVYAVAEMLR-RFRGGAAVVMGALSPRTRNAQVQMF--LNGDVDYLVATDA 239
Query: 301 IGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
IGMGLNL+++ + F++++KFDG R LTV E+ QIAGRAGR+
Sbjct: 240 IGMGLNLDVAHVAFASLRKFDGRRSRRLTVSEMAQIAGRAGRH 282
>gi|384261019|ref|YP_005416205.1| Helicase-like [Rhodospirillum photometricum DSM 122]
gi|378402119|emb|CCG07235.1| Helicase-like [Rhodospirillum photometricum DSM 122]
Length = 667
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 138/266 (51%), Gaps = 16/266 (6%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWE----VAKRLNKANVSCDLITGQEREE 138
+GPTN+GKTH A+ R+ +SG+ PLRLLA E +R+ + V+ LITG+E+
Sbjct: 27 LGPTNTGKTHLAMERMLGHASGMIGFPLRLLARENYDKAVRRVGASRVA--LITGEEKIL 84
Query: 139 VDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPA 197
+ TVE + + IDEIQ+ G RG FT LL E G
Sbjct: 85 PPRPLYTLCTVESMPLDRRVEFLAIDEIQLCGDPDRGHVFTDRLLHARGRVETMFLGAET 144
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
PLI++++ D + + Y RL+ L + +V FS +Y L +
Sbjct: 145 MAPLIRRLVPGCLFDTRPR-YSRLTCSGHLR-----LQRLPRRSAVVAFSADDVYALGEM 198
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 317
+ R + ++V G+L P TR Q + S E D LVA+DAIGMGLN++I + F+ +
Sbjct: 199 VR-RQRGGAAVVMGALSPRTRNAQVEMYQ--SGEVDYLVATDAIGMGLNMDIDHVAFAAL 255
Query: 318 KKFDGVELRDLTVPEVKQIAGRAGRY 343
+KFDG +R L EV QIAGRAGR+
Sbjct: 256 EKFDGTWMRRLAPQEVAQIAGRAGRH 281
>gi|192288922|ref|YP_001989527.1| helicase domain-containing protein [Rhodopseudomonas palustris
TIE-1]
gi|192282671|gb|ACE99051.1| helicase domain protein [Rhodopseudomonas palustris TIE-1]
Length = 1093
Score = 131 bits (330), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 103/299 (34%), Positives = 150/299 (50%), Gaps = 15/299 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL-NKANVSC-DLITGQEREEVD 140
+GPTN+GKTH A+ R+ + SG+ PLRLLA EV ++ +K + L+TG+E+ +
Sbjct: 23 LGPTNTGKTHLAIERMVAHPSGLIGLPLRLLAREVYNKIVDKVGANAVALVTGEEKIKPS 82
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAV 199
++ TVE D +DEIQ+ RG FT R L +E L G
Sbjct: 83 KPRYWVSTVEAMPRDLDVSFLAVDEIQIAADLERGHVFTDRILRRRGRDETLLLGAATMR 142
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
P+I+++L + + RLS L + +T IV FS +Y + + I+
Sbjct: 143 PMIERLLP----GASIVTRPRLSQLEYAGDRKLTRQPRRT--AIVAFSADEVYAIAELIK 196
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R ++V GSL P TR Q F S + D L+A+DAIGMGLNL++ + F++ +K
Sbjct: 197 -RQHGGAAVVLGSLSPRTRNAQVAMFQ--SGDVDYLIATDAIGMGLNLDVDHVAFASDRK 253
Query: 320 FDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 375
FDG + R LT E QI GRAGR G+ G + E + L EP ML+
Sbjct: 254 FDGYQFRRLTPAEFAQIGGRAGRATRDGTFGTTGRCAPFEPELVNALQNHSFEPVKMLQ 312
>gi|89069367|ref|ZP_01156726.1| helicase, putative [Oceanicola granulosus HTCC2516]
gi|89045134|gb|EAR51205.1| helicase, putative [Oceanicola granulosus HTCC2516]
Length = 999
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 144/287 (50%), Gaps = 16/287 (5%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC--DLITGQE 135
++ +GPTN+GKTH A+ R+ +GI PLRLLA EV R+ +A L+TG+E
Sbjct: 6 RITAVLGPTNTGKTHYAIERMLGHRTGIIGLPLRLLAREVYDRIVRARGPSVVALVTGEE 65
Query: 136 REEVDGAKHRAVTVE-MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCG 194
R A++ TVE M + +D+ +DEIQ+ RG FT LL + L
Sbjct: 66 RIVPGRAQYWVCTVEAMPQMAADF--VAVDEIQLCADPERGHVFTDRLLHARGHHETLF- 122
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
++ + V+ ER S L S + IV FS +Y +
Sbjct: 123 --MGAETMRSAIAAMVPKVQFMKRERFSQLTYSGSK--KISRMPGRSAIVGFSVENVYAI 178
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ + R K ++V G+L P TR Q + + + D LVA+DAIGMGLNL+I+ + F
Sbjct: 179 AELLR-RQKGGAAVVMGALSPRTRNAQVDMYQNG--DVDYLVATDAIGMGLNLDINHVAF 235
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGR---YGSKFPVGEVTCLDSE 358
S + KFDG +R L E+ QIAGRAGR +G+ GE LD +
Sbjct: 236 SALSKFDGRRMRPLIPGELAQIAGRAGRHMNHGTFGVTGEAPELDED 282
>gi|126738722|ref|ZP_01754418.1| helicase, putative [Roseobacter sp. SK209-2-6]
gi|126719903|gb|EBA16610.1| helicase, putative [Roseobacter sp. SK209-2-6]
Length = 579
Score = 131 bits (330), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 143/288 (49%), Gaps = 17/288 (5%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQE 135
+++ +GPTN+GKTH A+ R+ + SGI PLRLLA EV ++ + L+TG+E
Sbjct: 6 RLVAVLGPTNTGKTHYAIERMLAHRSGIMGFPLRLLAREVYDKIVALRGPSVVALVTGEE 65
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE--LHLC 193
R A++ TVE D IDEIQ+ RG FT LL L L
Sbjct: 66 RIVPPRAQYWICTVEAMPPGMGCDFLAIDEIQLCADPERGHVFTERLLRARGTHETLFLG 125
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
D P+ + V+ ER+S LV S + IV FS +Y
Sbjct: 126 ADTMRGPIAALV-----PGVEFLRRERMSELVYGGSK--KISRMPPRTAIVGFSVDNVYA 178
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + ++ R K ++V G+L P TR Q + + E D LVA+DAIGMGLNL+I +
Sbjct: 179 IAELLK-RQKGGAAVVMGALSPRTRNAQVALYQNG--EVDYLVATDAIGMGLNLDIDHVA 235
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGR---YGSKFPVGEVTCLDSE 358
FS KFDG +R L E+ QIAGRAGR +GS G+ L+ E
Sbjct: 236 FSATSKFDGRRMRPLAPNELAQIAGRAGRGMSHGSFGVTGDARPLEDE 283
>gi|159043335|ref|YP_001532129.1| helicase domain-containing protein [Dinoroseobacter shibae DFL 12]
gi|157911095|gb|ABV92528.1| helicase domain protein [Dinoroseobacter shibae DFL 12]
Length = 987
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 134/269 (49%), Gaps = 12/269 (4%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQE 135
++ +GPTN+GKTH A+ R+ +G+ PLRLLA EV ++ + L+TG+E
Sbjct: 6 RITAVLGPTNTGKTHYAIDRMLGYRTGVIGLPLRLLAREVYDKIVALRGPSVVALVTGEE 65
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCG 194
R D ++ TVE D +DEIQ+ RG FT R L E G
Sbjct: 66 RIVPDRVQYWVCTVEAMPQEIGADFLAVDEIQLCADPERGHVFTDRLLRARGLQETLFLG 125
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
I ++ + ER S L S ++ IV FS +Y +
Sbjct: 126 AETMRGAISALVP----KAQFLRRERFSELTYTGA--KKISRMKPRSAIVGFSVDNVYAM 179
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ I R K C++V G+L P TR Q + + + D LVA+DAIGMGLNL+++ + F
Sbjct: 180 AELIR-RQKGGCAVVMGALSPRTRNAQVDLYQNG--DVDYLVATDAIGMGLNLDVAHVAF 236
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY 343
S++ KFDG +R L E+ QIAGRAGRY
Sbjct: 237 SSLSKFDGRRMRALAPNELAQIAGRAGRY 265
>gi|83313344|ref|YP_423608.1| superfamily II DNA/RNA helicase [Magnetospirillum magneticum AMB-1]
gi|82948185|dbj|BAE53049.1| Superfamily II DNA and RNA helicase [Magnetospirillum magneticum
AMB-1]
Length = 808
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 94/271 (34%), Positives = 142/271 (52%), Gaps = 16/271 (5%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK----ANVSCDLITG 133
+++ +GPTN+GKTH A+ R+ + +SG+ PLRLLA E R+ K ANV+ LITG
Sbjct: 3 RILAVLGPTNTGKTHFAMERMLAHASGMIGFPLRLLARENYDRMVKIKGAANVA--LITG 60
Query: 134 QEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHL 192
+E+ A+ TVE + +DEIQ+ RG FT R L +E
Sbjct: 61 EEKIIPSHARWLVCTVESMPLDRRVAFLAVDEIQLCADPERGHIFTDRLLHARGESETLF 120
Query: 193 CGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIY 252
G PLI++++ V+ S R S L +V + +V FS +Y
Sbjct: 121 LGAETIRPLIRRLVP----GVEFMSRPRFSQLT--HVGAKKLGRLPPRSVLVAFSAAEVY 174
Query: 253 RLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRI 312
+ + + R + ++V G+L P TR Q + + E D +VA+DAIGMGLN+++ +
Sbjct: 175 AMAEFVR-RSRGGAAVVLGALSPRTRNAQVGMYQ--AGEVDYIVATDAIGMGLNMDVDHV 231
Query: 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
F+ ++KFDG R L E+ QIAGRAGR+
Sbjct: 232 AFAALRKFDGRAPRPLEPTEIAQIAGRAGRH 262
>gi|392380713|ref|YP_005029909.1| putative ATP-dependent DNA/RNA helicase [Azospirillum brasilense
Sp245]
gi|356875677|emb|CCC96425.1| putative ATP-dependent DNA/RNA helicase [Azospirillum brasilense
Sp245]
Length = 824
Score = 131 bits (329), Expect = 9e-28, Method: Compositional matrix adjust.
Identities = 96/281 (34%), Positives = 138/281 (49%), Gaps = 18/281 (6%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ +G+ PLRLLA E R+ K + L+TG+E+
Sbjct: 5 LGPTNTGKTHLAIERMLGHRTGMIGFPLRLLARENYDRIVSIKGKNAVALVTGEEKILPP 64
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAV 199
+ TVE + D +DE+Q+ RG FT LL E G
Sbjct: 65 SPSYWVCTVESMPLDRAVDFLAVDEVQLCADPERGHIFTDRLLNARGLVETMFLGSDTVQ 124
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
PLI++++ + S R S L + + C+V FS +Y L + I
Sbjct: 125 PLIRRLVP----RAEFISRPRFSQLT--YAGYRKLTRLPPRSCVVAFSATDVYALAEMIR 178
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R + ++V G+L P TR Q + + E D LVA+DAIGMGLN+++ + F+ + K
Sbjct: 179 -RQRGGTAVVLGALSPRTRNAQVGLYQ--AGEVDYLVATDAIGMGLNMDVDHVAFARIVK 235
Query: 320 FDGVELRDLTVPEVKQIAGRAGR------YGSKFPVGEVTC 354
FDG R L PEV QIAGRAGR +G+ VGE+
Sbjct: 236 FDGFAPRRLRAPEVAQIAGRAGRHMRDGTFGTTDEVGELEA 276
>gi|414175655|ref|ZP_11430059.1| hypothetical protein HMPREF9695_03705 [Afipia broomeae ATCC 49717]
gi|410889484|gb|EKS37287.1| hypothetical protein HMPREF9695_03705 [Afipia broomeae ATCC 49717]
Length = 1121
Score = 131 bits (329), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 138/263 (52%), Gaps = 12/263 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD--LITGQEREEVD 140
+GPTN+GKTH A+ R+ + SSGI PLRLLA EV ++ + LITG+E+ +
Sbjct: 24 LGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREVYNKIAARAGAGAVALITGEEKIKPP 83
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAV 199
A++ TVE D +DEIQ+ RG FT R L +E L G
Sbjct: 84 HARYWVSTVEAMPRDLDVSFLAVDEIQIAADLERGHVFTDRVLNRRGRDETLLLGAATMR 143
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
P+I+++L + + RLS L + +T IV FS +Y + + I
Sbjct: 144 PIIERLLP----GANIVTRPRLSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR 197
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R ++V GSL P TR Q F S + D LVA+DA+GMGLNL++ + F++ +K
Sbjct: 198 -RQHGGAAVVLGSLSPRTRNAQVDMFQ--SGDVDYLVATDAVGMGLNLDVDHVAFASDRK 254
Query: 320 FDGVELRDLTVPEVKQIAGRAGR 342
+DG + R LT E QIAGRAGR
Sbjct: 255 YDGYQFRRLTPAEFAQIAGRAGR 277
>gi|399991959|ref|YP_006572199.1| DNA/RNA helicase-like protein [Phaeobacter gallaeciensis DSM 17395
= CIP 105210]
gi|398656514|gb|AFO90480.1| DNA/RNA helicase-like protein [Phaeobacter gallaeciensis DSM 17395
= CIP 105210]
Length = 1005
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 136/269 (50%), Gaps = 14/269 (5%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN--VSCDLITGQE 135
+V+ +GPTN+GKTH A+ R+ +G+ PLRLLA EV ++ A L+TG+E
Sbjct: 11 RVLAVLGPTNTGKTHYAIERMLGHRTGVMGFPLRLLAREVYDKVVAARGPSVVALVTGEE 70
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE--LHLC 193
R A++ TVE D +DEIQ+ RG FT LL + L L
Sbjct: 71 RIVPPRAQYWICTVEAMPEGMGCDFLAVDEIQLCADPERGHVFTDRLLRARGTQETLFLG 130
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
D P+ + V+ ERLS LV S + IV FS +Y
Sbjct: 131 ADTMRGPIAALV-----PGVQFLRRERLSDLVYSGSK--KLSRMPARTAIVGFSIDNVYA 183
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + + R K ++V G+L P TR Q + + E D LVA+DAIGMGLNL+I +
Sbjct: 184 IAELLR-RQKGGAAVVMGALSPRTRNAQVELYQNG--EVDYLVATDAIGMGLNLDIDHVA 240
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGR 342
FS++ KFDG +R L E+ QIAGRAGR
Sbjct: 241 FSSLTKFDGRRMRQLAPNELAQIAGRAGR 269
>gi|75674607|ref|YP_317028.1| helicase [Nitrobacter winogradskyi Nb-255]
gi|74419477|gb|ABA03676.1| helicase [Nitrobacter winogradskyi Nb-255]
Length = 1124
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/265 (37%), Positives = 144/265 (54%), Gaps = 16/265 (6%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL-NKANV-SCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ + SSGI PLRLLA E+ ++ ++A V S L+TG+E+ +
Sbjct: 24 LGPTNTGKTHLAIERMLAHSSGIIGLPLRLLARELYDKIVDRAGVDSVALVTGEEK--IK 81
Query: 141 GAKHRAVTVEMADVVSDYDCA--VIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPA 197
A+ R + + D D A IDEIQ+ RG FT R L +E L G
Sbjct: 82 PARPRFWVSTVEAMPRDLDVAFLAIDEIQIAADLERGHVFTDRILHRRGRDETLLLGAAT 141
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
P++++IL + + RLS L + +T IV FS +Y + +
Sbjct: 142 MRPIVERILP----GASIVTRPRLSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAEL 195
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 317
I R + ++V GSL P TR Q F S + D LVA+DA+GMGLNL++ + F++
Sbjct: 196 IR-RQRGGAAVVLGSLSPRTRNAQVEMFQ--SGDVDYLVATDAVGMGLNLDVDHVAFASD 252
Query: 318 KKFDGVELRDLTVPEVKQIAGRAGR 342
+K+DG + R LT E QIAGRAGR
Sbjct: 253 RKYDGYQFRRLTPAEFAQIAGRAGR 277
>gi|126733169|ref|ZP_01748916.1| helicase, putative [Roseobacter sp. CCS2]
gi|126716035|gb|EBA12899.1| helicase, putative [Roseobacter sp. CCS2]
Length = 944
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 100/286 (34%), Positives = 140/286 (48%), Gaps = 15/286 (5%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQE 135
++ +GPTN+GKTH A+ R+ S +G+ PLRLLA EV R+ + L+TG+E
Sbjct: 5 RITAVLGPTNTGKTHYAIERMLSYRTGVIGLPLRLLAREVYDRIVAVRGPGVVALVTGEE 64
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCG 194
R A + TVE D +DEIQ+ RG FT LL +E G
Sbjct: 65 RIVPPRAAYWVCTVEAMPEGMGCDFLAVDEIQLCADPERGHVFTDRLLNARGLHETLFLG 124
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
++ + D ER+S L S + IV FS +Y +
Sbjct: 125 ----AETMRNAISAMVPDAHFMRRERMSQLTYSGS--KKISRMPARSAIVGFSVENVYAI 178
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ + R K ++V G+L P TR Q + + + D LVA+DAIGMGLNL+IS + F
Sbjct: 179 AELLR-RTKGGAAVVMGALSPRTRNAQVEMYQNG--DVDYLVATDAIGMGLNLDISHVAF 235
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDS 357
S++ KFDG +R L E+ QIAGRAGR+ G+ GE LD
Sbjct: 236 SSLTKFDGRRMRHLQPEELAQIAGRAGRHIENGTFGVTGEAPPLDE 281
>gi|400753596|ref|YP_006561964.1| DNA/RNA helicase-like protein [Phaeobacter gallaeciensis 2.10]
gi|398652749|gb|AFO86719.1| DNA/RNA helicase-like protein [Phaeobacter gallaeciensis 2.10]
Length = 1005
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 136/269 (50%), Gaps = 14/269 (5%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN--VSCDLITGQE 135
+V+ +GPTN+GKTH A+ R+ +G+ PLRLLA EV ++ A L+TG+E
Sbjct: 11 RVLAVLGPTNTGKTHYAIERMLGHRTGVMGFPLRLLAREVYDKVVAARGPSVVALVTGEE 70
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE--LHLC 193
R A++ TVE D +DEIQ+ RG FT LL + L L
Sbjct: 71 RIVPPRAQYWICTVEAMPEGMGCDFLAVDEIQLCADPERGHVFTDRLLRARGTQETLFLG 130
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
D P+ + V+ ERLS LV S + IV FS +Y
Sbjct: 131 ADTMRGPIAALV-----PGVQFLRRERLSDLVYSGSK--KLSRMPARTAIVGFSIDNVYA 183
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + + R K ++V G+L P TR Q + + E D LVA+DAIGMGLNL+I +
Sbjct: 184 IAELLR-RQKGGAAVVMGALSPRTRNAQVELYQNG--EVDYLVATDAIGMGLNLDIDHVA 240
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGR 342
FS++ KFDG +R L E+ QIAGRAGR
Sbjct: 241 FSSLTKFDGRRMRQLAPNELAQIAGRAGR 269
>gi|83591414|ref|YP_425166.1| helicase-like protein [Rhodospirillum rubrum ATCC 11170]
gi|386348096|ref|YP_006046344.1| helicase-like protein [Rhodospirillum rubrum F11]
gi|83574328|gb|ABC20879.1| Helicase-like [Rhodospirillum rubrum ATCC 11170]
gi|346716532|gb|AEO46547.1| helicase-like protein [Rhodospirillum rubrum F11]
Length = 1066
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 93/278 (33%), Positives = 141/278 (50%), Gaps = 30/278 (10%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWE----VAKRLNKANVSCDLITG 133
++ +GPTN+GKTH A+ R+ +SG+ PLRLLA E +R+ + V+ L+TG
Sbjct: 9 RITAVLGPTNTGKTHLAMERMLGHASGMIGFPLRLLARENYDKAVRRVGASRVA--LVTG 66
Query: 134 QEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHL- 192
+E+ + TVE + D IDEIQ+ G RG FT LL E +
Sbjct: 67 EEKILPPRPSYFICTVESMPIDRRVDFLAIDEIQLCGDPERGHLFTERLLNARGREETMF 126
Query: 193 CGDPAAVPLIQQILQVTGDDVKVQ-------SYERLSPLVPLNVPLGSFSNIQTGDCIVT 245
G PLI++++ D + + + +L+ L P + +V
Sbjct: 127 LGAETMAPLIRKLVPGCQFDTRPRFSQLTYNGHRKLTRLPPRS-------------AVVA 173
Query: 246 FSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGL 305
FS +Y + + + R + ++V G+L P TR Q + S E D LVA+DAIGMGL
Sbjct: 174 FSADDVYAIAELVR-RQRGGAAVVMGALSPRTRNAQVALYQ--SGEVDYLVATDAIGMGL 230
Query: 306 NLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
N+++ + F+ + KFDG R L+ EV QIAGRAGR+
Sbjct: 231 NMDVDHVAFAALSKFDGQGQRGLSAQEVAQIAGRAGRH 268
>gi|149688698|gb|ABR27760.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
gi|149688700|gb|ABR27761.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
gi|149688702|gb|ABR27762.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
gi|149688704|gb|ABR27763.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
gi|149688706|gb|ABR27764.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
gi|149688708|gb|ABR27765.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
gi|149688710|gb|ABR27766.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
Length = 283
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 128/248 (51%), Gaps = 11/248 (4%)
Query: 130 LITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE 189
LITG+E+ AK+ TVE + D IDEIQM RG FT LL + +
Sbjct: 17 LITGEEKIIPPNAKYFLCTVESMPINKHLDFVGIDEIQMCADHERGHIFTDRLLNLRGEK 76
Query: 190 LHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRH 249
L + + I+ I+ +D + + ERLS L V S I I+ FS
Sbjct: 77 LTMFMGSST---IKNIVNKLNEDTEFINRERLSKLTY--VGHKKISRINRKTAIIAFSTE 131
Query: 250 AIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNI 309
+Y + + + R K +IV GSL P+TR Q + S + D LVA+DAIGMG+N+++
Sbjct: 132 EVYAIAELVR-RQKGGAAIVMGSLSPKTRNAQVELY--QSGDVDFLVATDAIGMGINMDL 188
Query: 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKS 366
+ FS +KKFDG +LR L + E+ QIAGRAGRY GS G+ + +E++ LL
Sbjct: 189 ENVYFSNLKKFDGKKLRRLNMSEIGQIAGRAGRYLNDGSFGVTGDCKDISAEEVELLENH 248
Query: 367 LLEPSPML 374
E ML
Sbjct: 249 KFEEIRML 256
>gi|27375270|ref|NP_766799.1| ATP-dependent helicase [Bradyrhizobium japonicum USDA 110]
gi|27348406|dbj|BAC45424.1| ATP-dependent helicase [Bradyrhizobium japonicum USDA 110]
Length = 1123
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/263 (36%), Positives = 139/263 (52%), Gaps = 12/263 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ + SG+ PLRLLA EV ++ K S LITG+E+ +
Sbjct: 22 LGPTNTGKTHLAIERMLAHPSGMIGLPLRLLAREVYNKIADRKGVESVALITGEEKIKPK 81
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAV 199
++ TVE D +DE+Q+ RG FT +L +E L G
Sbjct: 82 NPRYWVSTVEAMPRDLDVSFLAVDEVQIASDLERGHVFTDRILNRRGRDETLLLGAATMR 141
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
P+I+++L V + + RLS L + +T IV FS +Y + + I
Sbjct: 142 PIIERLLP----GVSMITRPRLSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR 195
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R ++V GSL P TR Q + F + + D LVA+DA+GMGLNL++ + F++ +K
Sbjct: 196 -RQHGGAAVVLGSLSPRTRNAQVSMFQNG--DVDYLVATDAVGMGLNLDVDHVAFASDRK 252
Query: 320 FDGVELRDLTVPEVKQIAGRAGR 342
FDG + R LT E QIAGRAGR
Sbjct: 253 FDGYQFRRLTPSEFAQIAGRAGR 275
>gi|254461628|ref|ZP_05075044.1| Helicase conserved C-terminal domain protein [Rhodobacterales
bacterium HTCC2083]
gi|206678217|gb|EDZ42704.1| Helicase conserved C-terminal domain protein [Rhodobacteraceae
bacterium HTCC2083]
Length = 904
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/272 (36%), Positives = 140/272 (51%), Gaps = 18/272 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQ 134
+++I +GPTN+GKT A+ R+ + +G+ PLRLLA EV R+ + L+TG+
Sbjct: 5 QRIIAVLGPTNTGKTTYAIERMLAHRTGVIGLPLRLLAREVYDRIVTLRGPSVVALVTGE 64
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH--- 191
ER ++ TVE D +DEIQ+ RG FT LL A LH
Sbjct: 65 ERIVPPRTQYWVCTVEAMPQGMGADFLAVDEIQLCADPERGHVFTERLL--SARGLHETL 122
Query: 192 -LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHA 250
+ D P+ I D + + ER+S L + P S ++ IV FS
Sbjct: 123 FMGADTMRDPIKSLI-----PDAQFVARERMSELA-YSGP-KKISRMRPRSAIVGFSVEN 175
Query: 251 IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS 310
+Y + + I R K ++V G+L P TR Q + + +F LVA+DAIGMGLNL+I
Sbjct: 176 VYAIAELIR-RQKGGAAVVMGALSPRTRNAQVEMYQNGDVDF--LVATDAIGMGLNLDID 232
Query: 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGR 342
+ FS++ KFDG +R L E+ QIAGRAGR
Sbjct: 233 HVAFSSLSKFDGQRMRPLMANELAQIAGRAGR 264
>gi|316931528|ref|YP_004106510.1| helicase domain-containing protein [Rhodopseudomonas palustris
DX-1]
gi|315599242|gb|ADU41777.1| helicase domain protein [Rhodopseudomonas palustris DX-1]
Length = 1086
Score = 130 bits (328), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 150/300 (50%), Gaps = 17/300 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD---LITGQEREEV 139
+GPTN+GKTH A+ R+ + SG+ PLRLLA EV ++ V D L+TG+E+ +
Sbjct: 23 LGPTNTGKTHLAIERMVAHPSGLIGLPLRLLAREVYNKIVD-RVGPDAVALVTGEEKIKP 81
Query: 140 DGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAA 198
++ TVE D +DEIQ+ RG FT R L +E L G
Sbjct: 82 SKPRYWVSTVEAMPRDLDVSFLAVDEIQIAADLERGHVFTDRILRRRGRDETLLLGAATM 141
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
P+I+++L + + RLS L + +T IV FS +Y + + I
Sbjct: 142 RPMIERLLP----GASIVTRPRLSQLEYAGDRKLTRQPRRT--AIVAFSADEVYAIAELI 195
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
+ R ++V GSL P TR Q F S + D L+A+DA+GMGLNL++ + F++ +
Sbjct: 196 K-RQHGGAAVVLGSLSPRTRNAQVAMFQ--SGDVDYLIATDAVGMGLNLDVDHVAFASDR 252
Query: 319 KFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 375
KFDG + R LT E QIAGRAGR G+ G + E + L EP ML+
Sbjct: 253 KFDGYQFRRLTPSEFGQIAGRAGRATRDGTFGTTGRCAPFEPELVNALQNHSFEPVKMLQ 312
>gi|110679117|ref|YP_682124.1| helicase [Roseobacter denitrificans OCh 114]
gi|109455233|gb|ABG31438.1| helicase, putative [Roseobacter denitrificans OCh 114]
Length = 944
Score = 130 bits (327), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 147/289 (50%), Gaps = 21/289 (7%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR--LNKANVSCDLITGQ 134
++V+ +GPTN+GKT A+ R+ +G+ PLRLLA EV R + + L+TG+
Sbjct: 5 KRVVAVLGPTNTGKTTYAIERMLGHRTGVIGLPLRLLAREVYDRCVVARGPSVVALVTGE 64
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH--- 191
ER A++ TVE D IDEIQ+ RG FT LL A LH
Sbjct: 65 ERIVPPRAQYWVCTVEAMPEGMGCDFLAIDEIQLCADPERGHVFTDRLL--RARGLHETL 122
Query: 192 -LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHA 250
L D P+ + L + ++ + LS + P + S ++ IV FS
Sbjct: 123 FLGADTMRGPI--RALVPNAEFIQRERMSTLSYIGPKKI-----SRMKPRSAIVGFSVEN 175
Query: 251 IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS 310
+Y + + I R K ++V G+L P TR Q + + E D LVA+DAIGMGLNL++
Sbjct: 176 VYAIAELIR-RQKGGAAVVMGALSPRTRNAQVDMYQNG--EVDYLVATDAIGMGLNLDVD 232
Query: 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGR---YGSKFPVGEVTCLD 356
+ FS++ KFDG +R L E+ QIAGRAGR G+ G+ + LD
Sbjct: 233 HVAFSSLTKFDGRRMRPLAPNELAQIAGRAGRGMKNGTFGVTGDASALD 281
>gi|149688696|gb|ABR27759.1| ATP-dependent helicase [Candidatus Pelagibacter ubique]
Length = 283
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 91/248 (36%), Positives = 128/248 (51%), Gaps = 11/248 (4%)
Query: 130 LITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE 189
LITG+E+ AK+ TVE + D IDEIQM RG FT LL + +
Sbjct: 17 LITGEEKIIPPNAKYFLCTVESMPINKHLDFVGIDEIQMCADHERGHIFTDRLLNLRGEK 76
Query: 190 LHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRH 249
L + + I+ I+ +D + + ERLS L V S I I+ FS
Sbjct: 77 LTMFMGSST---IKNIVNKLNEDTEFINRERLSKLTY--VGHKKISRINRKTAIIAFSTE 131
Query: 250 AIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNI 309
+Y + + + R K +IV GSL P+TR Q + S + D LVA+DAIGMG+N+++
Sbjct: 132 EVYAIAELVR-RQKGGAAIVMGSLSPKTRNAQVELYQ--SGDVDFLVATDAIGMGINMDL 188
Query: 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKS 366
+ FS +KKFDG +LR L + E+ QIAGRAGRY GS G+ + +E++ LL
Sbjct: 189 ENVYFSNLKKFDGKKLRRLNMSEIGQIAGRAGRYLNDGSFGVTGDCKDISAEEVELLESH 248
Query: 367 LLEPSPML 374
E ML
Sbjct: 249 KFEEIRML 256
>gi|182677076|ref|YP_001831222.1| helicase domain-containing protein [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182632959|gb|ACB93733.1| helicase domain protein [Beijerinckia indica subsp. indica ATCC
9039]
Length = 1142
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 108/321 (33%), Positives = 158/321 (49%), Gaps = 19/321 (5%)
Query: 73 RKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL-NKANV-SCDL 130
+++ + V + +GPTN+GKTH A+ R+ + SG+ PLRLLA EV R+ KA + + L
Sbjct: 13 QERAKGVSILLGPTNTGKTHHAIERMLAHPSGMIGLPLRLLAREVYHRVVEKAGLGAVAL 72
Query: 131 ITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NE 189
ITG+E+ + A++ TVE D IDEIQ+ RG FT LL +E
Sbjct: 73 ITGEEKIKPATARYWISTVEAMPRDLDLSFVAIDEIQLASDLDRGHVFTDRLLNRRGRDE 132
Query: 190 LHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRH 249
L G +Q+ L + RLS L + + IV FS
Sbjct: 133 TLLIG----AATMQRALAELLPGAHFLARPRLSKLSFAGEK--KMARLPRRSAIVAFSAE 186
Query: 250 AIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNI 309
+Y + + I R + ++V G+L P TR Q + + E D +VA+DAIGMGLNL++
Sbjct: 187 EVYAIAEWIR-RQRGGAAVVLGALSPRTRNAQVEMYQNG--EVDYIVATDAIGMGLNLDV 243
Query: 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKS 366
I F+ +KFDG R LT E QIAGRAGR+ G+ G D + + L +
Sbjct: 244 DHIAFAADRKFDGWHYRRLTPAEFGQIAGRAGRHLRDGTFGTTGRCAPFDEDLIEALEEH 303
Query: 367 LLEPSPMLESAGLFPNFDLIY 387
+ ML+ + N DL +
Sbjct: 304 RFDSVNMLQ----WRNTDLDF 320
>gi|146337762|ref|YP_001202810.1| ATP-dependent RNA and DNA helicase/translation initiation factor 2
[Bradyrhizobium sp. ORS 278]
gi|146190568|emb|CAL74570.1| Conserved hypothetical protein; putative ATP-dependent RNA and DNA
helicase (N-terminal) and translation initiation factor
2 (IF-2; GTPase) (C-terminal) [Bradyrhizobium sp. ORS
278]
Length = 1170
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 139/265 (52%), Gaps = 16/265 (6%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLITGQEREE 138
+GPTN+GKTH A+ R+ + SSGI PLRLLA EV A R+ V+ LITG+E+ +
Sbjct: 32 LGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREVYNKIADRVGSETVA--LITGEEKIK 89
Query: 139 VDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPA 197
++ TVE D +DEIQ+ RG FT +L +E L G
Sbjct: 90 PKSPRYWVSTVEAMPRDLDVSFLAVDEIQIASDLERGHVFTDRILNRRGRDETLLLGAAT 149
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
P+I+++L + + RLS L + +T IV FS +Y + +
Sbjct: 150 MRPIIERLLP----GASMVTRPRLSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAEL 203
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 317
I R ++V GSL P TR Q F + + D LVA+DAIGMGLNL++ + F++
Sbjct: 204 IR-RQHGGAAVVLGSLSPRTRNAQVAMFQNG--DVDYLVATDAIGMGLNLDVDHVAFASD 260
Query: 318 KKFDGVELRDLTVPEVKQIAGRAGR 342
+K+DG + R LT E QIAGRAGR
Sbjct: 261 RKYDGYQFRRLTPSEFAQIAGRAGR 285
>gi|209883220|ref|YP_002287077.1| helicase [Oligotropha carboxidovorans OM5]
gi|209871416|gb|ACI91212.1| helicase [Oligotropha carboxidovorans OM5]
Length = 1082
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 148/299 (49%), Gaps = 15/299 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ + SSG+ PLRLLA EV ++ LITG+E+ +
Sbjct: 2 LGPTNTGKTHLAIERMLAHSSGLIGLPLRLLAREVYNKIVARAGAEQVALITGEEKIKPP 61
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAV 199
A++ TVE D +DEIQ+ RG FT +L +E L G
Sbjct: 62 NARYWVSTVEAMPRELDVSFLAVDEIQIAADLERGHVFTDRILNRRGRDETLLLGAATMR 121
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
PLI+++L + + RLS L + +T IV FS +Y + + I
Sbjct: 122 PLIERLLP----GANIVTRPRLSLLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR 175
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R ++V GSL P TR Q F S + D LVA+DAIGMGLNL++ + F++ K
Sbjct: 176 -RQHGGAAVVLGSLSPRTRNAQVEMFQ--SGDVDYLVATDAIGMGLNLDVDHVAFASDYK 232
Query: 320 FDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 375
+DG + R LT E QIAGRAGR G+ G + E + L L + ML+
Sbjct: 233 YDGYQFRRLTPAEFAQIAGRAGRATRNGTFGTTGRCAPFEPELVNALQNHLFDSVKMLQ 291
>gi|149688694|gb|ABR27758.1| ATP-dependent helicase [Candidatus Pelagibacter ubique HTCC1002]
Length = 283
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 90/248 (36%), Positives = 129/248 (52%), Gaps = 11/248 (4%)
Query: 130 LITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE 189
LITG+E+ AK+ TVE + D IDEIQM RG FT LL + +
Sbjct: 17 LITGEEKIIPPNAKYFLCTVESMPINKHLDFVGIDEIQMCADHERGHIFTDRLLNLRGEK 76
Query: 190 LHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRH 249
L + + I++I+ +D + + ERLS L V S I I+ FS
Sbjct: 77 LTMFMGSST---IKKIVNKLNEDTEFINRERLSKLTY--VGHKKISRINRKTAIIAFSTE 131
Query: 250 AIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNI 309
+Y + + + R K +IV GSL P+TR Q + S + D LVA+DAIGMG+N+++
Sbjct: 132 EVYAIAELVR-RQKGGAAIVMGSLSPKTRNAQVELY--QSGDVDFLVATDAIGMGINMDL 188
Query: 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKS 366
+ FS +KKFDG +LR L + E+ QIAGRAGRY G+ G+ + +E++ LL
Sbjct: 189 ENVYFSNLKKFDGKKLRRLNMSEIGQIAGRAGRYLNDGNFGVTGDCKDISAEEVELLENH 248
Query: 367 LLEPSPML 374
E ML
Sbjct: 249 KFEEIRML 256
>gi|385303195|gb|EIF47285.1| atp-dependent rna component of the mitochondrial degradosome along
with the rnase dss1p [Dekkera bruxellensis AWRI1499]
Length = 225
Score = 130 bits (327), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 75/184 (40%), Positives = 112/184 (60%), Gaps = 5/184 (2%)
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+K IE + C+++YG+LPPETR+++A RFND +D++VASDAIGMGLNL I+R+I
Sbjct: 1 MKIQIERQTNFKCAVIYGALPPETRSQEAQRFNDGI--YDIVVASDAIGMGLNLKINRVI 58
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYG-SKFPVGEVTCLDSEDLPLLHKSLLEPSP 372
F+T +KF+G + LT +KQI GRAGRYG VG +T + ++L + K +
Sbjct: 59 FTTTQKFNGSKNVSLTSSNIKQIGGRAGRYGIGGESVGHITAISRDELENVSKGVEGDIK 118
Query: 373 MLESAGLFPNFDL-IYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVID 431
+ A L+P DL I YS P+++L I F E+ + +N A E KV ++ D
Sbjct: 119 YINKAILWPPDDLWIKYYSMFAPETNLVTIYRRFEEDLNI-KNAKTAERSEDFKVQSLKD 177
Query: 432 QLPL 435
+L +
Sbjct: 178 KLMM 181
>gi|337739683|ref|YP_004631411.1| helicase domain-containing protein [Oligotropha carboxidovorans
OM5]
gi|386028701|ref|YP_005949476.1| helicase domain-containing protein [Oligotropha carboxidovorans
OM4]
gi|336093769|gb|AEI01595.1| helicase domain protein [Oligotropha carboxidovorans OM4]
gi|336097347|gb|AEI05170.1| helicase domain protein [Oligotropha carboxidovorans OM5]
Length = 1104
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 105/299 (35%), Positives = 148/299 (49%), Gaps = 15/299 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ + SSG+ PLRLLA EV ++ LITG+E+ +
Sbjct: 24 LGPTNTGKTHLAIERMLAHSSGLIGLPLRLLAREVYNKIVARAGAEQVALITGEEKIKPP 83
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAV 199
A++ TVE D +DEIQ+ RG FT +L +E L G
Sbjct: 84 NARYWVSTVEAMPRELDVSFLAVDEIQIAADLERGHVFTDRILNRRGRDETLLLGAATMR 143
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
PLI+++L + + RLS L + +T IV FS +Y + + I
Sbjct: 144 PLIERLLP----GANIVTRPRLSLLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR 197
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R ++V GSL P TR Q F S + D LVA+DAIGMGLNL++ + F++ K
Sbjct: 198 -RQHGGAAVVLGSLSPRTRNAQVEMFQ--SGDVDYLVATDAIGMGLNLDVDHVAFASDYK 254
Query: 320 FDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 375
+DG + R LT E QIAGRAGR G+ G + E + L L + ML+
Sbjct: 255 YDGYQFRRLTPAEFAQIAGRAGRATRNGTFGTTGRCAPFEPELVNALQNHLFDSVKMLQ 313
>gi|99080414|ref|YP_612568.1| helicase-like protein [Ruegeria sp. TM1040]
gi|99036694|gb|ABF63306.1| helicase-like protein [Ruegeria sp. TM1040]
Length = 984
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 99/269 (36%), Positives = 134/269 (49%), Gaps = 14/269 (5%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQE 135
+V+ +GPTN+GKTH A+ R+ +G+ PLRLLA EV ++ K L+TG+E
Sbjct: 6 RVVAVLGPTNTGKTHYAIDRMLGYRTGVMGFPLRLLAREVYDKIVKLRGPSVVALVTGEE 65
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI--CANELHLC 193
R A++ TVE D IDEIQ+ RG FT LL L L
Sbjct: 66 RIVPPRAQYWICTVEAMPEGMGCDFLAIDEIQLCADPERGHVFTDRLLRSRGMKETLFLG 125
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
D P+ + V+ ER+S LV S + IV FS ++Y
Sbjct: 126 ADTMRGPIAALV-----PGVEFVRRERMSELVYAGSK--KISRMPPRTAIVGFSVDSVYA 178
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R K ++V G+L P TR Q + + E D LVA+DAIGMGLNL++ +
Sbjct: 179 IAELIR-RQKGGAAVVMGALSPRTRNAQVALYQN--GEVDYLVATDAIGMGLNLDVDHVA 235
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGR 342
FS KFDG +R L E+ QIAGRAGR
Sbjct: 236 FSATSKFDGRRMRPLAPNELAQIAGRAGR 264
>gi|456358523|dbj|BAM92968.1| conserved hypothetical protein [Agromonas oligotrophica S58]
Length = 1161
Score = 130 bits (326), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 139/265 (52%), Gaps = 16/265 (6%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLITGQEREE 138
+GPTN+GKTH A+ R+ + SSGI PLRLLA EV A R+ V+ LITG+E+ +
Sbjct: 2 LGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREVYNKIADRVGSEAVA--LITGEEKIK 59
Query: 139 VDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPA 197
++ TVE D +DEIQ+ RG FT +L +E L G
Sbjct: 60 PKNPRYWVSTVEAMPRDLDVSFLAVDEIQIASDLERGHVFTDRILNRRGRDETLLLGAAT 119
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
P+I+++L + + RLS L + +T IV FS +Y + +
Sbjct: 120 MRPMIERLLP----GASMVTRPRLSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAEL 173
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 317
I R ++V GSL P TR Q F + + D LVA+DAIGMGLNL++ + F++
Sbjct: 174 IR-RQHGGAAVVLGSLSPRTRNAQVAMFQNG--DVDYLVATDAIGMGLNLDVDHVAFASD 230
Query: 318 KKFDGVELRDLTVPEVKQIAGRAGR 342
+K+DG + R LT E QIAGRAGR
Sbjct: 231 RKYDGYQFRRLTPSEFAQIAGRAGR 255
>gi|346992360|ref|ZP_08860432.1| helicase, putative [Ruegeria sp. TW15]
Length = 928
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 100/280 (35%), Positives = 141/280 (50%), Gaps = 15/280 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ +G+ PLRLLA EV ++ + + L+TG+ER
Sbjct: 4 LGPTNTGKTHYAIERMLGYRTGLIGLPLRLLAREVYDKIVAIRGHSVVALVTGEERIVPP 63
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAV 199
A++ TVE D IDEIQ+ RG FT R L NE G
Sbjct: 64 RAQYWVCTVEAMPEGMGADFVAIDEIQLCADPERGHVFTDRLLRSRGTNETLFLGSDTMR 123
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
I ++ + + ER+S LV S + + IV FS +Y + + +
Sbjct: 124 GAIAALVP----EAQFVRRERMSQLVYSGSK--KISRMPSRSAIVGFSVDNVYAIAELLR 177
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R K ++V G+L P TR Q + + E D LVA+DAIGMGLNL+++ + FS++ K
Sbjct: 178 -RQKGGAAVVMGALSPRTRNAQVDLYQNG--EVDYLVATDAIGMGLNLDVNHVAFSSLTK 234
Query: 320 FDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLD 356
FDG +R L E+ QIAGRAGR G+ GE LD
Sbjct: 235 FDGRRMRPLAPNELAQIAGRAGRGMSDGTFGVTGEAPPLD 274
>gi|398384532|ref|ZP_10542562.1| superfamily II RNA helicase [Sphingobium sp. AP49]
gi|397722691|gb|EJK83227.1| superfamily II RNA helicase [Sphingobium sp. AP49]
Length = 996
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 106/316 (33%), Positives = 150/316 (47%), Gaps = 42/316 (13%)
Query: 71 LARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSC 128
AR V V+ GPTN+GKTH A+ R+ SSG+ PLRLLA EV R+ K
Sbjct: 21 FARSPVTAVL---GPTNTGKTHLAVERMCGHSSGMMGFPLRLLAREVYDRVVAIKGANQV 77
Query: 129 DLITGQEREEVDGAKHRAVTVE------------------------MADVVSDYDCAVID 164
LITG+E+ GA++ T E M +SD+ +D
Sbjct: 78 ALITGEEKIVPPGARYFLCTAESMPISGVGRQAGADTRNAGRETAAMTGGLSDFAFVALD 137
Query: 165 EIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSP 223
E Q+ RG FT R L E + G + ++ ++ D+++ R S
Sbjct: 138 EAQLGADPERGHIFTDRILRARGREETMILGSASIARTVKSLVP----DIEIIGRPRFST 193
Query: 224 LVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQAT 283
L S + IV FS +Y + + + R + ++V G+L P TR Q
Sbjct: 194 LSYAGAK--KLSRLPRRSAIVAFSAEEVYAVAEMLR-RFRGGAAVVMGALSPRTRNAQVQ 250
Query: 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
F + E D LVA+DAIGMGLNL+++ + F++++KFDG R LTV E+ QIAGRAGR+
Sbjct: 251 MF--LNGEVDYLVATDAIGMGLNLDVAHVAFASLRKFDGRRSRRLTVAEMAQIAGRAGRH 308
Query: 344 GSKFPVGEVTCLDSED 359
G L SED
Sbjct: 309 HKD---GTFGSLGSED 321
>gi|339504398|ref|YP_004691818.1| helicase-like protein [Roseobacter litoralis Och 149]
gi|338758391|gb|AEI94855.1| helicase-like protein [Roseobacter litoralis Och 149]
Length = 933
Score = 129 bits (325), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 102/289 (35%), Positives = 147/289 (50%), Gaps = 21/289 (7%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC--DLITGQ 134
++V+ +GPTN+GKT A+ R+ +G+ PLRLLA EV R A L+TG+
Sbjct: 5 KRVVAVLGPTNTGKTTYAIERMLGHRTGVIGLPLRLLAREVYDRCVAARGPSVVALVTGE 64
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH--- 191
ER A++ TVE D +DEIQ+ RG FT LL A LH
Sbjct: 65 ERIVPPRAQYWVCTVEAMPDGMGCDFLAVDEIQLCADPERGHVFTDRLL--RARGLHETL 122
Query: 192 -LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHA 250
L D P+ + L D ++ + L+ + P + S ++ IV FS +
Sbjct: 123 FLGADTMRGPI--RALVPNADFIQRERMSTLTYIGPKKI-----SRMKPRSAIVGFSVES 175
Query: 251 IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS 310
+Y + + I R K ++V G+L P TR Q + + E D LVA+DAIGMGLNL++
Sbjct: 176 VYAIAELIR-RQKGGAAVVMGALSPRTRNAQVDMYQNG--EVDYLVATDAIGMGLNLDVD 232
Query: 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGR---YGSKFPVGEVTCLD 356
+ FS++ KFDG +R L E+ QIAGRAGR G+ G+ + LD
Sbjct: 233 HVAFSSLAKFDGRRMRPLAPNELAQIAGRAGRGMKNGTFGVTGDASPLD 281
>gi|85704958|ref|ZP_01036058.1| helicase, putative, partial [Roseovarius sp. 217]
gi|85670280|gb|EAQ25141.1| helicase, putative, partial [Roseovarius sp. 217]
Length = 733
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 141/282 (50%), Gaps = 15/282 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ +GI PLRLLA EV ++ + L+TG+ER +
Sbjct: 11 LGPTNTGKTHYAIERMLGYRTGIIGLPLRLLAREVYDKIVAVRGPSVVALVTGEERIVPE 70
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAV 199
A++ TVE D +DEIQ+ RG FT LL + E G
Sbjct: 71 RAQYWVCTVEAMPEGMGTDFVAVDEIQLCADPERGHVFTDRLLRMRGLRETQFLGSHT-- 128
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
++Q + V+ S R+S L + + IV FS +Y + + +
Sbjct: 129 --MRQTIAALVPGVEFLSRARMSQLTYTGPK--KIAKMPARSAIVGFSVENVYAIAELLR 184
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R K ++V G+L P TR Q + + + D LVA+DAIGMGLNL+I+ + FS++ K
Sbjct: 185 -RQKGGAAVVMGALSPRTRNAQVELYQNG--DVDYLVATDAIGMGLNLDINHVAFSSLSK 241
Query: 320 FDGVELRDLTVPEVKQIAGRAGR---YGSKFPVGEVTCLDSE 358
FDG +R L E+ QIAGRAGR G+ GE LD E
Sbjct: 242 FDGRRMRYLQPNELGQIAGRAGRGMSNGTFGVTGEAPDLDPE 283
>gi|386399858|ref|ZP_10084636.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM1253]
gi|385740484|gb|EIG60680.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM1253]
Length = 1148
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 151/300 (50%), Gaps = 17/300 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD---LITGQEREEV 139
+GPTN+GKTH A+ R+ + SG+ PLRLLA EV ++ A V D L+TG+E+ +
Sbjct: 22 LGPTNTGKTHLAIERMLAHPSGMIGLPLRLLAREVYNKI-AARVGPDAVALVTGEEKIKP 80
Query: 140 DGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAA 198
++ TVE D +DE+Q+ RG FT +L +E L G
Sbjct: 81 KAPRYWVSTVEAMPRDLDVSFLAVDEVQIASDLERGHVFTDRILNRRGRDETLLLGAATM 140
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
P+I+++L V + + RLS L + +T IV FS +Y + + I
Sbjct: 141 RPIIERLLP----GVSMITRPRLSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELI 194
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
R ++V GSL P TR Q F + E D LVA+DA+GMGLNL++ + F++ +
Sbjct: 195 R-RQHGGAAVVLGSLSPRTRNAQVAMFQNG--EVDYLVATDAVGMGLNLDVDHVAFASDR 251
Query: 319 KFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 375
KFDG + R LT E QIAGRAGR G+ G + E + L +P +L+
Sbjct: 252 KFDGYQFRRLTPSEFGQIAGRAGRATRNGTFGTTGRCAPFEPELVNALQNHTFDPVKVLQ 311
>gi|383768911|ref|YP_005447974.1| ATP-dependent helicase [Bradyrhizobium sp. S23321]
gi|381357032|dbj|BAL73862.1| ATP-dependent helicase [Bradyrhizobium sp. S23321]
Length = 1146
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 100/288 (34%), Positives = 147/288 (51%), Gaps = 19/288 (6%)
Query: 65 PHTWYPLARKKVRK-------VILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
P + P A ++ R V +GPTN+GKTH A+ R+ + SSG+ PLRLLA EV
Sbjct: 2 PFSSSPFASERARSDRVPGAGVTAVLGPTNTGKTHLAIERMLAHSSGVIGLPLRLLAREV 61
Query: 118 AKRL--NKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRG 175
++ + L+TG+E+ + ++ TVE D +DEIQ+ RG
Sbjct: 62 YNKIVARVGPEAVALVTGEEKIKPKNPRYWVSTVEAMPRDLDVSFLAVDEIQIASDLERG 121
Query: 176 FSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
FT +L +E L G P+I+++L V + + RLS L +
Sbjct: 122 HVFTDRILNRRGRDETLLLGAATMRPIIERLLP----GVSMITRPRLSQLEFAGDRKITR 177
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294
+T IV FS +Y + + I+ R ++V GSL P TR Q F S + D
Sbjct: 178 QPRRT--AIVAFSADEVYAIAELIK-RQHGGAAVVLGSLSPRTRNAQVEMFQ--SGDVDY 232
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGR 342
LVA+DA+GMGLNL++ + F++ +K+DG + R LT E QIAGRAGR
Sbjct: 233 LVATDAVGMGLNLDVDHVAFASDRKYDGYQFRRLTPSEFAQIAGRAGR 280
>gi|374572237|ref|ZP_09645333.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM471]
gi|374420558|gb|EHR00091.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. WSM471]
Length = 1137
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/264 (36%), Positives = 139/264 (52%), Gaps = 14/264 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD---LITGQEREEV 139
+GPTN+GKTH A+ R+ + SG+ PLRLLA EV ++ A V D L+TG+E+ +
Sbjct: 22 LGPTNTGKTHLAIERMLAHPSGMIGLPLRLLAREVYNKI-AARVGPDAVALVTGEEKIKP 80
Query: 140 DGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAA 198
++ TVE D +DE+Q+ RG FT +L +E L G
Sbjct: 81 KAPRYWVSTVEAMPRDLDVSFLAVDEVQIASDLERGHVFTDRILNRRGRDETLLLGAATM 140
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
P+I+++L V + + RLS L + +T IV FS +Y + + I
Sbjct: 141 RPIIERLLP----GVSMITRPRLSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELI 194
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
R ++V GSL P TR Q F + E D LVA+DA+GMGLNL++ + F++ +
Sbjct: 195 R-RQHGGAAVVLGSLSPRTRNAQVAMFQNG--EVDYLVATDAVGMGLNLDVDHVAFASDR 251
Query: 319 KFDGVELRDLTVPEVKQIAGRAGR 342
KFDG + R LT E QIAGRAGR
Sbjct: 252 KFDGYQFRRLTPSEFAQIAGRAGR 275
>gi|365893045|ref|ZP_09431251.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3809]
gi|365330803|emb|CCE03782.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3809]
Length = 1142
Score = 129 bits (325), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 99/265 (37%), Positives = 139/265 (52%), Gaps = 16/265 (6%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLITGQEREE 138
+GPTN+GKTH A+ R+ + SSGI PLRLLA EV A R+ V+ LITG+E+ +
Sbjct: 2 LGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREVYNKIADRVGSEAVA--LITGEEKIK 59
Query: 139 VDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPA 197
++ TVE D +DEIQ+ RG FT +L +E L G
Sbjct: 60 PRNPRYWVSTVEAMPRDLDVSFLAVDEIQIASDLERGHVFTDRILNRRGRDETLLLGAAT 119
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
P+I+++L + + RLS L + +T IV FS +Y + +
Sbjct: 120 MRPIIERLLP----GASMVTRPRLSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAEL 173
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 317
I R ++V GSL P TR Q F + + D LVA+DAIGMGLNL++ + F++
Sbjct: 174 IR-RQHGGAAVVLGSLSPRTRNAQVAMFQNG--DVDYLVATDAIGMGLNLDVDHVAFASD 230
Query: 318 KKFDGVELRDLTVPEVKQIAGRAGR 342
+K+DG + R LT E QIAGRAGR
Sbjct: 231 RKYDGYQFRRLTPSEFAQIAGRAGR 255
>gi|284990781|ref|YP_003409335.1| helicase domain-containing protein [Geodermatophilus obscurus DSM
43160]
gi|284064026|gb|ADB74964.1| helicase domain protein [Geodermatophilus obscurus DSM 43160]
Length = 550
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 102/269 (37%), Positives = 142/269 (52%), Gaps = 11/269 (4%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQE 135
+V+ H+GPTNSGKTH AL+ L + +G Y PLR LA E RL+ + L TG+E
Sbjct: 8 RVVFHLGPTNSGKTHDALAALADAGAGTYAAPLRQLAHEAYARLSAQLPPGTVGLSTGEE 67
Query: 136 REEVD-GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCG 194
+VD A TVE A V+DE + RG ++ R LL E+ +
Sbjct: 68 --QVDPTAPVLCCTVEKAP--PRGGLLVLDEAHWVTDPDRGHTWARLLLTGEYREVRVIS 123
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
A+P+++ L DV+V + RLS L L P+ S ++ +V FSR A+Y
Sbjct: 124 AAEALPVLEP-LVADVADVEVVHHGRLSRLDVLRAPV-RPSGVRPRTLVVAFSRKAVYAT 181
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+E+ ++YG+LPP TR + RF E DVLV +D IG G+N+ + ++F
Sbjct: 182 AAVLEAVRPGRTGVLYGALPPATRRQVIDRFT--RGELDVLVTTDVIGHGINVPAATVLF 239
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY 343
+ KFDGVE R L E QIAGRAGRY
Sbjct: 240 AETTKFDGVERRPLRTWETAQIAGRAGRY 268
>gi|407787113|ref|ZP_11134255.1| helicase-like protein [Celeribacter baekdonensis B30]
gi|407199939|gb|EKE69951.1| helicase-like protein [Celeribacter baekdonensis B30]
Length = 983
Score = 129 bits (324), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 97/287 (33%), Positives = 141/287 (49%), Gaps = 15/287 (5%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQE 135
++ +GPTN+GKTH A+ R+ + +G+ PLRLLA EV ++ + L+TG+E
Sbjct: 10 RITAVLGPTNTGKTHYAIERMLAYRTGVIGLPLRLLAREVYDKIVARRGPSVVALVTGEE 69
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCG 194
R A++ TVE D +DEIQ+ RG FT LL +E G
Sbjct: 70 RIVPARAQYWVCTVEAMPTGMGADFLAVDEIQLCADPERGHVFTDRLLNARGLHETLFMG 129
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
+ +I ++ + +R S L S + IV FS +Y +
Sbjct: 130 SDSMRSVIANLVP----KAQFMHRDRFSRLTYSGSK--KISRMPARAAIVGFSVDDVYAI 183
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ + R K ++V G+L P TR Q + + E D LVA+DAIGMGLNL+++ + F
Sbjct: 184 AELLR-RQKGGAAVVMGALSPRTRNAQVEMYQNG--EVDYLVATDAIGMGLNLDVTHVAF 240
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
S+ KFDG +R L E+ QIAGRAGRY G+ GE D E
Sbjct: 241 SSTIKFDGRRMRHLAPNELAQIAGRAGRYQTDGTFGVTGEAEPFDEE 287
>gi|260427627|ref|ZP_05781606.1| MgpS [Citreicella sp. SE45]
gi|260422119|gb|EEX15370.1| MgpS [Citreicella sp. SE45]
Length = 996
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/264 (37%), Positives = 133/264 (50%), Gaps = 14/264 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVS--CDLITGQEREEVD 140
+GPTN+GKTH A+ R+ +G+ PLRLLA EV ++ A L+TG+ER
Sbjct: 11 LGPTNTGKTHYAIERMLGHRTGMIGLPLRLLAREVYDKIVAARGPSVVALVTGEERIVPA 70
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA--NELHLCGDPAA 198
A++ TVE D IDEIQ+ RG FT LL + L L D
Sbjct: 71 RAQYWVCTVEAMPEGMGCDFVAIDEIQLCADPERGHVFTDRLLRMRGLHETLFLGSDTMR 130
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
P+ + + ER+S L L S + IV FS +Y + + I
Sbjct: 131 GPIAALV-----KGCEFIRRERMSQLSYLGSK--KISRMPARSAIVGFSVDNVYAIAELI 183
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
R K ++V G+L P TR Q + + E D LVA+DAIGMGLNL+I + FS++
Sbjct: 184 R-RTKGGAAVVMGALSPRTRNAQVDLYQNG--EVDYLVATDAIGMGLNLDIDHVAFSSLT 240
Query: 319 KFDGVELRDLTVPEVKQIAGRAGR 342
KFDG +R+L E+ QIAGRAGR
Sbjct: 241 KFDGRRMRELQPNELAQIAGRAGR 264
>gi|90420291|ref|ZP_01228199.1| ATP-dependent helicase [Aurantimonas manganoxydans SI85-9A1]
gi|90335625|gb|EAS49375.1| ATP-dependent helicase [Aurantimonas manganoxydans SI85-9A1]
Length = 1089
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/279 (35%), Positives = 145/279 (51%), Gaps = 16/279 (5%)
Query: 72 ARKKVR----KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL-NKANV 126
AR+ +R V +GPTN+GKT+ A+ R+ + SSG PLRLLA EV +++ ++ V
Sbjct: 7 ARESIRFDGSNVTAVLGPTNTGKTYLAIERMVAHSSGTIGLPLRLLAREVYQKVCDRVGV 66
Query: 127 -SCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLG 184
+ LITG+E+ + A++ TVE + IDE+Q+ RG FT R L
Sbjct: 67 GAVALITGEEKIKPPNARYSVCTVEAMPRTPNTAFVAIDEVQLASDLERGHVFTDRILHA 126
Query: 185 ICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIV 244
E L G ++Q++L + + RLS LV + + IV
Sbjct: 127 RGREETLLLGSSTMQGVLQRLLSGS----HATTRPRLSNLVYAGS--RKITRLPRRTAIV 180
Query: 245 TFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMG 304
FS +Y + + I R + ++V G+L P TR Q + S + D L+A+DAIGMG
Sbjct: 181 AFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNAQVELYQ--SGDVDFLIATDAIGMG 237
Query: 305 LNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
LNL++ + F+ KFDG + R LT E QIAGRAGR+
Sbjct: 238 LNLDVDHVAFAQDWKFDGFQYRQLTPSEFGQIAGRAGRH 276
>gi|115522157|ref|YP_779068.1| helicase domain-containing protein [Rhodopseudomonas palustris
BisA53]
gi|115516104|gb|ABJ04088.1| helicase domain protein [Rhodopseudomonas palustris BisA53]
Length = 1116
Score = 129 bits (324), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 139/269 (51%), Gaps = 24/269 (8%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL-NKAN-VSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ + SSGI PLRLLA EV ++ ++A S LITG+E+ +
Sbjct: 24 LGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREVYNKIADRAGPESVALITGEEKIKPQ 83
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAV 199
++ TVE D +DEIQ+ RG FT R L +E L G
Sbjct: 84 KPRYWVSTVEAMPRDLDVSFLAVDEIQIAADLERGHVFTDRMLHRRGRDETLLLGAATMR 143
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQT------GDCIVTFSRHAIYR 253
P+++++L + + R+S L FS + IV FS +Y
Sbjct: 144 PIVERLLP----GASIVTRPRMSQL--------EFSGDRKITRQPRRTAIVAFSADEVYA 191
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R ++V GSL P TR Q + S + D LVA+DA+GMGLNL++ +
Sbjct: 192 IAELIR-RQHGGAAVVLGSLSPRTRNAQVAMYQ--SGDVDYLVATDAVGMGLNLDVDHVA 248
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGR 342
F++ +KFDG + R L E QIAGRAGR
Sbjct: 249 FASDRKFDGYQFRRLNPSEFAQIAGRAGR 277
>gi|367476476|ref|ZP_09475856.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 285]
gi|365271231|emb|CCD88324.1| conserved hypothetical protein [Bradyrhizobium sp. ORS 285]
Length = 1160
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 139/265 (52%), Gaps = 16/265 (6%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLITGQEREE 138
+GPTN+GKTH A+ R+ + SSGI PLRLLA EV A R+ V+ LITG+E+ +
Sbjct: 32 LGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREVYNKIADRVGSEAVA--LITGEEKIK 89
Query: 139 VDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPA 197
++ TVE D +DEIQ+ RG FT +L +E L G
Sbjct: 90 PKNPRYWVSTVEAMPRDLDVSFLAVDEIQIASDLERGHVFTDRILNRRGRDETLLLGAAT 149
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
P+I+++L + + RLS L + +T IV FS +Y + +
Sbjct: 150 MRPIIERLLP----GASMVTRPRLSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAEL 203
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 317
I R ++V GSL P TR Q F + + D LVA+DA+GMGLNL++ + F++
Sbjct: 204 IR-RQHGGAAVVLGSLSPRTRNAQVAMFQNG--DVDYLVATDAVGMGLNLDVDHVAFASD 260
Query: 318 KKFDGVELRDLTVPEVKQIAGRAGR 342
+K+DG + R LT E QIAGRAGR
Sbjct: 261 RKYDGYQFRRLTPSEFAQIAGRAGR 285
>gi|407798103|ref|ZP_11145016.1| helicase-like protein [Oceaniovalibus guishaninsula JLT2003]
gi|407059940|gb|EKE45863.1| helicase-like protein [Oceaniovalibus guishaninsula JLT2003]
Length = 1013
Score = 129 bits (323), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 102/304 (33%), Positives = 146/304 (48%), Gaps = 15/304 (4%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC--DLITGQE 135
++ +GPTN+GKTH A+ R+ +G+ PLRLLA EV R+ A L+TG+E
Sbjct: 14 RITAVLGPTNTGKTHYAIERMLGYRTGVIGLPLRLLAREVYDRIVAARGPSVVALVTGEE 73
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCG 194
R + ++ TVE D +DEIQ+ RG FT R L +E G
Sbjct: 74 RIVPERTQYWVCTVEAMPEGMGADFLAVDEIQLCADPERGHVFTDRLLRSRGTHETLFLG 133
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
I ++ + ER S L + S ++ IV FS +Y +
Sbjct: 134 AETMRGAIAALVP----QAQFLRRERFSTL--MYTGSRKISRMRPRSAIVGFSVENVYAI 187
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ I R K ++V G+L P TR Q + + +F LVA+DAIGMGLNL+I + F
Sbjct: 188 AELIR-RQKGGAAVVMGALSPRTRNAQVDMYQNGDVDF--LVATDAIGMGLNLDIDHVAF 244
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPS 371
S KFDG +R L E+ QIAGRAGRY G+ GE LD + + + + P
Sbjct: 245 SGTTKFDGRRMRPLMPNELAQIAGRAGRYMQDGTFGVTGEAAPLDEDVVEAITEHRFAPL 304
Query: 372 PMLE 375
+L+
Sbjct: 305 KVLQ 308
>gi|163747408|ref|ZP_02154760.1| helicase, putative [Oceanibulbus indolifex HEL-45]
gi|161379261|gb|EDQ03678.1| helicase, putative [Oceanibulbus indolifex HEL-45]
Length = 730
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 104/288 (36%), Positives = 142/288 (49%), Gaps = 19/288 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN--VSCDLITGQ 134
++V+ + PTN+GKT A+ R+ + +G+ PLRLLA EV R+ KA L+TG+
Sbjct: 5 KRVVAVLAPTNTGKTTYAIERMLAHRTGVIGLPLRLLAREVYDRIVKARGPSVVALVTGE 64
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH--- 191
ER ++ TVE D IDEIQ+ RG FT LL A LH
Sbjct: 65 ERIVPPRTQYWVCTVEAMPQEMGADFVAIDEIQLCADPERGHVFTDRLL--RARGLHETL 122
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
G I + V G V +R+S LV S ++ IV FS +
Sbjct: 123 FMGSDTMRGTIAAL--VPG--VDFMRRDRMSELVYSGQK--KISRMKPRSAIVGFSVENV 176
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + I R K ++V G+L P TR Q + + E D LVA+DAIGMGLNL++
Sbjct: 177 YAIAELIR-RQKGGAAVVMGALSPRTRNAQVEMYQNG--EVDYLVATDAIGMGLNLDVDH 233
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGR---YGSKFPVGEVTCLD 356
+ FS + KFDG +R L E+ QIAGRAGR G+ G+ LD
Sbjct: 234 VAFSALSKFDGRRMRPLAPNELAQIAGRAGRGFKSGTFGTTGDAPALD 281
>gi|23014814|ref|ZP_00054612.1| COG0513: Superfamily II DNA and RNA helicases [Magnetospirillum
magnetotacticum MS-1]
Length = 384
Score = 129 bits (323), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 94/283 (33%), Positives = 144/283 (50%), Gaps = 14/283 (4%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD--LITGQE 135
+++ +GPTN+GKTH A+ R+ + +SG+ PLRLLA E R+ K + LITG+E
Sbjct: 3 RILAVLGPTNTGKTHFAMERMLAHASGMIGFPLRLLARENYDRIVKIKGAAQVALITGEE 62
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCG 194
+ + TVE + +DEIQ+ RG FT R L E G
Sbjct: 63 KIIPPHPRWLVCTVESMPLDRRVAFLAVDEIQLCADPERGHIFTDRLLHARGETETLFLG 122
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
PLI++++ V+ S R S L +V + +V FS +Y +
Sbjct: 123 AETIKPLIRRLVP----GVEFMSRPRFSQLT--HVGAKKLGRLPPRSVLVAFSAAEVYAM 176
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ + R + ++V G+L P TR Q + + E D +VA+DAIGMGLN+++ + F
Sbjct: 177 AEFVR-RSRGGAAVVLGALSPRTRNAQVGMYQ--AGEVDYIVATDAIGMGLNMDVDHVAF 233
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357
++++KFDG R L E+ QIAGRAGR+ + G T LD+
Sbjct: 234 ASLRKFDGRSPRPLEPTEIAQIAGRAGRHMNDGTFG--TTLDA 274
>gi|85713778|ref|ZP_01044768.1| helicase [Nitrobacter sp. Nb-311A]
gi|85699682|gb|EAQ37549.1| helicase [Nitrobacter sp. Nb-311A]
Length = 1128
Score = 128 bits (322), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 139/263 (52%), Gaps = 12/263 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL-NKANV-SCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ + SSGI PLRLLA E+ ++ ++A V S L+TG+E+ +
Sbjct: 24 LGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREIYNKIVDRAGVESVALVTGEEKIKPA 83
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAV 199
+ TVE D IDEIQ+ RG FT R L +E L G
Sbjct: 84 RPRFWVSTVEAMPRDLDVSFLAIDEIQIAADLERGHVFTDRILRRRGRDETLLLGAATMR 143
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
P+++++L + + RLS L + +T IV FS +Y + + I
Sbjct: 144 PIVERLLP----GASIVTRPRLSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR 197
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R ++V GSL P TR Q F S + D LVA+DA+GMGLNL++ + F++ +K
Sbjct: 198 -RQHGGAAVVLGSLSPRTRNAQVAMFQ--SGDVDYLVATDAVGMGLNLDVDHVAFASDRK 254
Query: 320 FDGVELRDLTVPEVKQIAGRAGR 342
+DG + R L E QIAGRAGR
Sbjct: 255 YDGYQFRRLNPAEFAQIAGRAGR 277
>gi|148258716|ref|YP_001243301.1| ATP-dependent RNA and DNA helicase [Bradyrhizobium sp. BTAi1]
gi|146410889|gb|ABQ39395.1| putative ATP-dependent RNA and DNA helicase [Bradyrhizobium sp.
BTAi1]
Length = 1177
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 98/265 (36%), Positives = 138/265 (52%), Gaps = 16/265 (6%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDLITGQEREE 138
+GPTN+GKTH A+ R+ + SSGI PLRLLA EV A R+ V+ LITG+E+ +
Sbjct: 28 LGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREVYNKIADRVGSEAVA--LITGEEKIK 85
Query: 139 VDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPA 197
++ TVE D +DEIQ+ RG FT +L +E L G
Sbjct: 86 PKAPRYWVSTVEAMPRDLDVSFLAVDEIQIAADLERGHVFTDRILNRRGRDETLLLGAAT 145
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
P+I+++L + + RLS L + +T IV FS +Y + +
Sbjct: 146 MRPIIERLLP----GASMVTRPRLSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAEL 199
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 317
I R ++V GSL P TR Q F + + D LVA+DAIGMGLNL++ + F++
Sbjct: 200 IR-RQHGGAAVVLGSLSPRTRNAQVEMFQNG--DVDYLVATDAIGMGLNLDVDHVAFASD 256
Query: 318 KKFDGVELRDLTVPEVKQIAGRAGR 342
+K+DG + R L E QIAGRAGR
Sbjct: 257 RKYDGYQFRRLNPSEFAQIAGRAGR 281
>gi|302798691|ref|XP_002981105.1| hypothetical protein SELMODRAFT_420766 [Selaginella moellendorffii]
gi|300151159|gb|EFJ17806.1| hypothetical protein SELMODRAFT_420766 [Selaginella moellendorffii]
Length = 730
Score = 128 bits (322), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 103/358 (28%), Positives = 149/358 (41%), Gaps = 133/358 (37%)
Query: 90 KTHQALSRLESSSSGIYCGPLRLLA---WEVAKRLNKANVSCDLITGQEREEVDGAKHRA 146
+ Q + L S + + LR LA EVA++LN NV C L+TGQER EV+GA+H+A
Sbjct: 50 QQRQNIHCLAKSPASFFRNLLRSLASPRLEVAEKLNSLNVPCSLLTGQERNEVEGAQHKA 109
Query: 147 VTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQIL 206
+TVEMAD+ +Y+CAVIDEIQ + T+ L C L+L + + IL
Sbjct: 110 MTVEMADITREYECAVIDEIQ---------ARTKIFLVRCYLRLYLLMN------LYVIL 154
Query: 207 QVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLC 266
V G ++ +++E L P + C
Sbjct: 155 DVFGAEIAFETFEALHPAIN---------------------------------------C 175
Query: 267 SIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELR 326
S+VYGSLPPETRT+Q + KFDG+
Sbjct: 176 SVVYGSLPPETRTKQ-----------------------------------LDKFDGIARC 200
Query: 327 DLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI 386
L+V +VKQIAGRAGRY GL +F
Sbjct: 201 YLSVMQVKQIAGRAGRY--------------------------------QIGLCCSF--- 225
Query: 387 YMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFC 444
+P+ ILE F+ +S +F + +L +A ++D +PL + ++LFC
Sbjct: 226 ------YPNFPFSAILEKFIATVTVSSMFFLCDSTNLLAIARMLDDIPLPMDSRFLFC 277
>gi|254510321|ref|ZP_05122388.1| Helicase conserved C-terminal domain protein [Rhodobacteraceae
bacterium KLH11]
gi|221534032|gb|EEE37020.1| Helicase conserved C-terminal domain protein [Rhodobacteraceae
bacterium KLH11]
Length = 929
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 140/282 (49%), Gaps = 19/282 (6%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ +G+ PLRLLA EV ++ + L+TG+ER
Sbjct: 4 LGPTNTGKTHYAIERMLGYRTGVIGLPLRLLAREVYDKIVAIRGPSVVALVTGEERIVPP 63
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA---NELHLCGDPA 197
++ TVE D IDEIQ+ RG FT LL CA NE G
Sbjct: 64 RTQYWVCTVEAMPEGMGADFVAIDEIQLCADPERGHVFTDRLL--CARGTNETLFLGSDT 121
Query: 198 AVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKA 257
I ++ + + ER+S LV S + IV FS +Y + +
Sbjct: 122 MRGTIAALVP----EAQFVRRERMSQLVYSGS--RKISRMPARSAIVGFSVENVYAIAEL 175
Query: 258 IESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTM 317
+ R K ++V G+L P TR Q + + E D LVA+DAIGMGLNL+++ + FS++
Sbjct: 176 LR-RQKGGAAVVMGALSPRTRNAQVDLYQNG--EVDYLVATDAIGMGLNLDVNHVAFSSL 232
Query: 318 KKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLD 356
KFDG +R L E+ QIAGRAGR G+ GE LD
Sbjct: 233 TKFDGRRMRPLAPNELAQIAGRAGRGMSDGTFGVTGEAPPLD 274
>gi|144898949|emb|CAM75813.1| Helicase, C-terminal [Magnetospirillum gryphiswaldense MSR-1]
Length = 820
Score = 128 bits (321), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 96/299 (32%), Positives = 150/299 (50%), Gaps = 15/299 (5%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKAN--VSCDLITGQE 135
+V+ +GPTN+GKTH A+ R+ +SG+ PLRLLA E R+ KA LITG+E
Sbjct: 4 RVLAVLGPTNTGKTHFAIDRMLGHASGMIGFPLRLLARENYDRIVKAKGVAQVALITGEE 63
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI-CANELHLCG 194
+ + TVE + +DEIQ+ RG FT LL + E G
Sbjct: 64 KIIPAHPRWFVCTVESMPLDRRVAFLAVDEIQLCADPERGHIFTDRLLNARGSEETVFLG 123
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
PL++++ V G V+ S RLS L + + +V FS +Y +
Sbjct: 124 AETIKPLMRRL--VPG--VEYSSRPRLSSLTYAGAK--KLNRLPPRSAVVAFSASEVYAM 177
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ + R + ++V G+L P TR Q + + E D +VA+DAIGMGLN+++ + F
Sbjct: 178 AEYVR-RQRGGAAVVLGALSPRTRNAQIGLYQ--AGEVDYIVATDAIGMGLNMDVDHVAF 234
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEP 370
+ ++KFDG R L E+ QIAGRAGR+ G+ ++ +D++ + + +P
Sbjct: 235 AGLRKFDGRSPRPLAATEIAQIAGRAGRHMNDGTFGTTADIAGIDADVVEAVENHKFQP 293
>gi|452965358|gb|EME70382.1| superfamily II DNA/RNA helicase [Magnetospirillum sp. SO-1]
Length = 817
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 93/287 (32%), Positives = 143/287 (49%), Gaps = 14/287 (4%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQE 135
+++ +GPTN+GKTH A+ R+ +SG+ PLRLLA E R+ K L+TG+E
Sbjct: 3 RILAVLGPTNTGKTHFAMERMLGHASGMIGFPLRLLARENYDRIVRLKGASQVALVTGEE 62
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCG 194
+ + TVE + +DEIQ+ RG FT LL E G
Sbjct: 63 KIIPPHPRWLVCTVESMPLDRRVSFLAVDEIQLCADPERGHIFTDRLLHARGEAETLFLG 122
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
PLI++++ V+ S R S L +V + +V FS +Y +
Sbjct: 123 AETIKPLIRRLVP----GVEFMSRPRFSQLT--HVGAKKLGRLPPRSVLVAFSASEVYAM 176
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ + R + ++V G+L P TR Q + + E D +VA+DAIGMGLN+++ + F
Sbjct: 177 AEFVR-RSRGGAAVVLGALSPRTRNAQVGLYQ--AGEVDYIVATDAIGMGLNMDVDHVAF 233
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLP 361
+ ++KFDG R L E+ QIAGRAGR+ + G T +D+ +P
Sbjct: 234 AALRKFDGRAPRPLEPAEIAQIAGRAGRHMNDGTFG--TTMDAGTIP 278
>gi|114706529|ref|ZP_01439430.1| DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site
motif A (P-loop):Aldehyde dehydrogenase [Fulvimarina
pelagi HTCC2506]
gi|114537921|gb|EAU41044.1| DEAD/DEAH box helicase:Helicase, C-terminal:ATP/GTP-binding site
motif A (P-loop):Aldehyde dehydrogenase [Fulvimarina
pelagi HTCC2506]
Length = 1124
Score = 127 bits (320), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 96/277 (34%), Positives = 142/277 (51%), Gaps = 16/277 (5%)
Query: 72 ARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK----RLNKANVS 127
++ R+V +GPTN+GKT A+ R+ + SSG PLRLLA EV + R+ ANV+
Sbjct: 12 SKADTRQVTAVLGPTNTGKTFLAIERMVAHSSGTIGLPLRLLAREVYQKVCDRVGAANVA 71
Query: 128 CDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA 187
LITG+E+ + A++ TVE IDE+Q+ RG FT +L
Sbjct: 72 --LITGEEKIKPPHARYSVCTVEAMPRNPGTAFVAIDEVQLASDLERGHVFTDRILNCRG 129
Query: 188 -NELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF 246
E L G ++ ++L ++ + RLS L + + + IV F
Sbjct: 130 YEETLLLGASTMAGVLNRLLP----GMQTATRPRLSNL--MYAGQKKITRLPRRSAIVAF 183
Query: 247 SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 306
S +Y + + I R + ++V G+L P TR Q + + E D LVA+DAIGMGLN
Sbjct: 184 SAAEVYAIAELIR-RQRGGAAVVLGALSPRTRNAQVELYQ--TGEVDFLVATDAIGMGLN 240
Query: 307 LNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
L++ + F+ K+DG + R LT E QIAGRAGR+
Sbjct: 241 LDVDHVAFAQDWKYDGFQYRQLTPAEFGQIAGRAGRH 277
>gi|149202305|ref|ZP_01879278.1| helicase, putative [Roseovarius sp. TM1035]
gi|149144403|gb|EDM32434.1| helicase, putative [Roseovarius sp. TM1035]
Length = 970
Score = 127 bits (319), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 99/290 (34%), Positives = 145/290 (50%), Gaps = 21/290 (7%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQE 135
+ + +GPTN+GKTH A+ R+ +GI PLRLLA EV ++ + L+TG+E
Sbjct: 6 RTLAVLGPTNTGKTHYAIERMLGYRTGIIGLPLRLLAREVYDKIVAVRGPSVVALVTGEE 65
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCG 194
R + A++ TVE D +DEIQ+ RG FT LL + E G
Sbjct: 66 RIVPERAQYWVCTVEAMPEGMGADFVAVDEIQLCADPERGHVFTDRLLRMRGLRETQFLG 125
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLV---PLNVPLGSFSNIQTGDCIVTFSRHAI 251
++Q + V+ S R+S L P + + + IV FS +
Sbjct: 126 SHT----MRQTIAALVPGVEFLSRARMSQLTYTGPRKI-----AKMPARSAIVGFSVENV 176
Query: 252 YRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISR 311
Y + + + R K ++V G+L P TR Q + + + D LVA+DAIGMGLNL+I+
Sbjct: 177 YAMAELLR-RQKGGAAVVMGALSPRTRNAQVELYQN--GDVDYLVATDAIGMGLNLDINH 233
Query: 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGR---YGSKFPVGEVTCLDSE 358
+ FS++ KFDG +R L E+ QIAGRAGR G+ GE L+ E
Sbjct: 234 VAFSSLSKFDGRRMRYLQPNELGQIAGRAGRGMNNGTFGVTGEAPDLEPE 283
>gi|398824869|ref|ZP_10583186.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. YR681]
gi|398224449|gb|EJN10754.1| DNA/RNA helicase, superfamily II [Bradyrhizobium sp. YR681]
Length = 1141
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 140/264 (53%), Gaps = 14/264 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD---LITGQEREEV 139
+GPTN+GKTH A+ R+ + SG+ PLRLLA EV ++ A V + L+TG+E+ +
Sbjct: 27 LGPTNTGKTHLAIERMLAHPSGLIGLPLRLLAREVYNKI-AARVGSEAVALVTGEEKIKP 85
Query: 140 DGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAA 198
++ TVE D +DE+Q+ RG FT +L +E L G
Sbjct: 86 KNPRYWVSTVEAMPRDLDVSFLAVDEVQIASDLERGHVFTDRILNRRGRDETLLLGAATM 145
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
P+I+++L V + + RLS L + +T IV FS +Y + + I
Sbjct: 146 RPIIERLLP----GVSMITRPRLSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELI 199
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
+ R ++V GSL P TR Q F + + D LVA+DA+GMGLNL++ + F++ +
Sbjct: 200 K-RQHGGAAVVLGSLSPRTRNAQVEMFQNG--DVDYLVATDAVGMGLNLDVDHVAFASDR 256
Query: 319 KFDGVELRDLTVPEVKQIAGRAGR 342
KFDG + R LT E QIAGRAGR
Sbjct: 257 KFDGYQFRRLTPSEFAQIAGRAGR 280
>gi|384213900|ref|YP_005605063.1| ATP-dependent helicase [Bradyrhizobium japonicum USDA 6]
gi|354952796|dbj|BAL05475.1| ATP-dependent helicase [Bradyrhizobium japonicum USDA 6]
Length = 1126
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/264 (35%), Positives = 139/264 (52%), Gaps = 14/264 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD---LITGQEREEV 139
+GPTN+GKTH A+ R+ + SG+ PLRLLA EV ++ A V + L+TG+E+ +
Sbjct: 22 LGPTNTGKTHLAIERMLAHPSGLIGLPLRLLAREVYNKI-AARVGSEAVALVTGEEKIKP 80
Query: 140 DGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAA 198
++ TVE D +DE+Q+ RG FT +L +E L G
Sbjct: 81 KNPRYWVSTVEAMPRDLDVSFLAVDEVQIASDLERGHVFTDRILNRRGRDETLLLGAATM 140
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
P+I+++L V + + RLS L + +T IV FS +Y + + I
Sbjct: 141 RPIIERLLP----GVSMITRPRLSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELI 194
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
R ++V GSL P TR Q F + + D LVA+DA+GMGLNL++ + F++ +
Sbjct: 195 R-RQHGGAAVVLGSLSPRTRNAQVAMFQNG--DVDYLVATDAVGMGLNLDVDHVAFASDR 251
Query: 319 KFDGVELRDLTVPEVKQIAGRAGR 342
KFDG + R LT E QIAGRAGR
Sbjct: 252 KFDGYQFRRLTPAEFAQIAGRAGR 275
>gi|114764923|ref|ZP_01444096.1| helicase, putative [Pelagibaca bermudensis HTCC2601]
gi|114542635|gb|EAU45659.1| helicase, putative [Roseovarius sp. HTCC2601]
Length = 989
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/264 (37%), Positives = 133/264 (50%), Gaps = 14/264 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANV--SCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ +G+ PLRLLA EV ++ A + L+TG+ER
Sbjct: 11 LGPTNTGKTHYAIERMLGHRTGMIGLPLRLLAREVYDKVVAARGPGTVALVTGEERIVPP 70
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA--NELHLCGDPAA 198
A++ TVE D IDEIQ+ RG FT LL + L L D
Sbjct: 71 RAQYWICTVEAMPEGMGCDFVAIDEIQLCADPERGHVFTDRLLRMRGLHETLFLGSDTMR 130
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
P+ + + ER+S L L S + IV FS +Y + + I
Sbjct: 131 GPINALV-----KGCEFIRRERMSQLGYLGSK--KISRMPARSAIVGFSVDNVYAIAELI 183
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
R K ++V G+L P TR Q + + E D LVA+DAIGMGLNL+I + FS++
Sbjct: 184 R-RTKGGAAVVMGALSPRTRNAQVDLYQNG--EVDYLVATDAIGMGLNLDIDHVAFSSLT 240
Query: 319 KFDGVELRDLTVPEVKQIAGRAGR 342
KFDG +R L E+ QIAGRAGR
Sbjct: 241 KFDGRRMRPLQPNELAQIAGRAGR 264
>gi|365893471|ref|ZP_09431646.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3843]
gi|365425773|emb|CCE04188.1| conserved hypothetical protein [Bradyrhizobium sp. STM 3843]
Length = 1192
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 138/263 (52%), Gaps = 12/263 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL-NKANVS-CDLITGQEREEVD 140
+GPTN+GKTH A+ R+ + SSGI PLRLLA EV ++ ++ LITG+E+ +
Sbjct: 28 LGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREVYNKIVDRVGTELVALITGEEKIKPK 87
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAV 199
++ TVE D +DE+Q+ RG FT +L +E L G
Sbjct: 88 NPRYWVSTVEAMPRDLDVSFLAVDEVQIAADLERGHVFTDRILNRRGRDETLLLGAATMR 147
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
P+I+++L + + RLS L + +T IV FS +Y + + I
Sbjct: 148 PIIERLLP----GASLVTRPRLSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR 201
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R ++V GSL P TR Q F + + D LVA+DAIGMGLNL++ + F++ +K
Sbjct: 202 -RQHGGAAVVLGSLSPRTRNAQVAMFQNG--DVDYLVATDAIGMGLNLDVDHVAFASDRK 258
Query: 320 FDGVELRDLTVPEVKQIAGRAGR 342
+DG + R LT E QIAGRAGR
Sbjct: 259 YDGYQFRRLTPAEFAQIAGRAGR 281
>gi|92116125|ref|YP_575854.1| helicase-like protein [Nitrobacter hamburgensis X14]
gi|91799019|gb|ABE61394.1| helicase-like protein [Nitrobacter hamburgensis X14]
Length = 1140
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 98/263 (37%), Positives = 139/263 (52%), Gaps = 12/263 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL-NKANV-SCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ + SSGI PLRLLA EV ++ ++A S LITG+E+ +
Sbjct: 24 LGPTNTGKTHLAIERMLAHSSGIIGLPLRLLAREVYNKIADRAGPDSVALITGEEKIKPA 83
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAV 199
+ TVE D +DEIQ+ RG FT R L +E L G
Sbjct: 84 RPRFWVSTVEAMPRDLDVSFLAVDEIQISADLERGHVFTDRILHRRGRDETLLLGAATMR 143
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
P+I+++L + + RLS L + +T IV FS +Y + + I
Sbjct: 144 PIIERLLP----GASIVTRPRLSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR 197
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R ++V GSL P TR Q F S + D LVA+DA+GMGLNL++ + F++ +K
Sbjct: 198 -RQHGGAAVVLGSLSPRTRNAQVAMFQ--SGDVDYLVATDAVGMGLNLDVDHVAFASDRK 254
Query: 320 FDGVELRDLTVPEVKQIAGRAGR 342
+DG + R LT E Q+AGRAGR
Sbjct: 255 YDGYQFRRLTPAEFAQVAGRAGR 277
>gi|372279847|ref|ZP_09515883.1| helicase-like protein [Oceanicola sp. S124]
Length = 978
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 108/319 (33%), Positives = 152/319 (47%), Gaps = 26/319 (8%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVS--CDLITGQE 135
++ +GPTN+GKTH A+ R+ +GI PLRLLA EV R+ A L+TG+E
Sbjct: 6 RITAVLGPTNTGKTHYAIERMLGHRTGIIGLPLRLLAREVYDRIVAARGPSVVALVTGEE 65
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALL---GICANELHL 192
R K+ TVE D +DEIQ+ RG FT LL G+ +
Sbjct: 66 RIVPPRTKYWVCTVEAMPEGMGCDFLAVDEIQLCADPERGHVFTDRLLRARGLV--DTIF 123
Query: 193 CGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIY 252
G + +I +L + + ER+S L S + T +V FS IY
Sbjct: 124 LGSHSMRGVIADLLP----EAQFIHRERMSQLTYAGGK--KVSRLPTRSAVVGFSVDNIY 177
Query: 253 RLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRI 312
+ + I R K ++V G+L P TR Q + + +F LVA+DAIGMGLNL++ +
Sbjct: 178 AMAELIR-RQKGGAAVVMGALSPRTRNAQVELYQNGDVDF--LVATDAIGMGLNLDVRHV 234
Query: 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLE 369
FS + KFDG +R+L E+ QIAGRAGR G+ GE L E + +
Sbjct: 235 AFSGLSKFDGRRMRELFPHEMGQIAGRAGRGMSDGTFGVTGEAGSLPPELAEAIMEHRFA 294
Query: 370 P-------SPMLESAGLFP 381
P +P L AG+ P
Sbjct: 295 PVRKLQWRNPQLNFAGIDP 313
>gi|84515403|ref|ZP_01002765.1| helicase, putative [Loktanella vestfoldensis SKA53]
gi|84510686|gb|EAQ07141.1| helicase, putative [Loktanella vestfoldensis SKA53]
Length = 924
Score = 126 bits (317), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/285 (36%), Positives = 143/285 (50%), Gaps = 15/285 (5%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQE 135
++ +GPTN+GKTH A+ R+ S +G+ PLRLLA EV R+ K L+TG+E
Sbjct: 5 RITAVLGPTNTGKTHYAIQRMLSYRTGVIGLPLRLLAREVYDRIVAIKGPGVVALVTGEE 64
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGD 195
R A + TVE D +DEIQ+ RG FT LL A LH
Sbjct: 65 RIVPPRAAYWVCTVEAMPDGMGCDFLAVDEIQLCADPERGHIFTDRLL--HARGLHETLF 122
Query: 196 PAAVPLIQQILQ-VTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
A + I V G V+ +R+S L S + IV FS +Y +
Sbjct: 123 LGAETMRGAIAALVPGAQFMVR--DRMSELTYTGSK--KISRMPARSAIVGFSVDNVYAI 178
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ + R K ++V G+L P TR Q + + + D LVA+DAIGMGLNL+IS + F
Sbjct: 179 AELLR-RTKGGAAVVMGALSPRTRNAQVEMYQNG--DVDYLVATDAIGMGLNLDISHVAF 235
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLD 356
S++ K+DG +R L E+ QIAGRAGR+ G+ GE LD
Sbjct: 236 SSLTKYDGRRMRHLEPQELAQIAGRAGRHIENGTFGVTGEAPPLD 280
>gi|13473300|ref|NP_104867.1| MgpS, ATP-dependent helicase [Mesorhizobium loti MAFF303099]
gi|14024048|dbj|BAB50653.1| ATP-dependent helicase; MgpS [Mesorhizobium loti MAFF303099]
Length = 1092
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 98/282 (34%), Positives = 144/282 (51%), Gaps = 15/282 (5%)
Query: 100 SSSSGIYCGPLRLLAWEVAKRL-NKANV-SCDLITGQEREEVDGAKHRAVTVEMADVVSD 157
+ +G+ PLRLLA EV R+ K LITG+E+ + GAK+ TVE +D
Sbjct: 3 AHETGVIGLPLRLLAREVYTRVCEKVGAHKVALITGEEKIQPAGAKYSVCTVEAMPRETD 62
Query: 158 YDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQ 216
IDE+Q+ G RG FT +L + E L G ++Q++L+ V V
Sbjct: 63 AAFVAIDEVQLAGDLERGHIFTDRILHLRGRQETLLLGAATMHGILQRLLK----GVSVV 118
Query: 217 SYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 276
+ RLS L + + IV FS +Y + + I R + ++V G+L P
Sbjct: 119 TRPRLSHLAYAGSK--KLTRLPRRTAIVAFSADEVYAIAELIR-RQQGGAAVVLGALSPR 175
Query: 277 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 336
TR Q F S + D LVA+DAIGMGLNL++ + F+ +KFDG + R+LT E+ QI
Sbjct: 176 TRNAQVALFQ--SGDVDYLVATDAIGMGLNLDLDHVAFAQNRKFDGYQYRNLTAAELGQI 233
Query: 337 AGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLE 375
AGRAGR+ G+ G+V LD E + + +P +L+
Sbjct: 234 AGRAGRHLRDGTFGVTGQVDPLDEELVKKIESHDFDPVKVLQ 275
>gi|407782965|ref|ZP_11130172.1| ATP-dependent helicase MgpS [Oceanibaculum indicum P24]
gi|407203875|gb|EKE73858.1| ATP-dependent helicase MgpS [Oceanibaculum indicum P24]
Length = 919
Score = 125 bits (315), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 96/283 (33%), Positives = 143/283 (50%), Gaps = 17/283 (6%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK---ANVSCDLITGQ 134
+V +GPTN+GKT+ A+ R+ S+G+ PLRLLA E R+ + AN LITG+
Sbjct: 14 RVTAVLGPTNTGKTYLAIERMLGHSTGMIGFPLRLLARENYDRIARIRGAN-QVALITGE 72
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLC 193
E+ A++ TVE + +DEIQ+ + RG FT LL +E
Sbjct: 73 EKIVPPHARYFVCTVESMPLDRRVSFLAVDEIQLCADRERGHVFTDRLLNARGLDETMFL 132
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G PL+++++ + + R S L + + +V FS +Y
Sbjct: 133 GAETIRPLLKRLIP----EAHFVTRPRFSTLS--YTGYKKVTRLPRRSAVVAFSAADVYS 186
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
L + + R + ++V G+L P R Q + + E D LVA+DAIGMGLN+++ +
Sbjct: 187 LAELVR-RQRGGTAVVLGALSPRARNAQVEMYQ--AGEVDYLVATDAIGMGLNMDLDHVA 243
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVG---EVT 353
F+ + KFDG R LT PE+ QIAGRAGR+ S G EVT
Sbjct: 244 FARLGKFDGRGPRRLTAPELAQIAGRAGRHMSDGTFGVTAEVT 286
>gi|90422069|ref|YP_530439.1| helicase-like protein [Rhodopseudomonas palustris BisB18]
gi|90104083|gb|ABD86120.1| helicase-like [Rhodopseudomonas palustris BisB18]
Length = 1169
Score = 125 bits (314), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 95/263 (36%), Positives = 139/263 (52%), Gaps = 12/263 (4%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRL-NKANV-SCDLITGQEREEVD 140
+GPTN+GKTH A+ R+ + SSG+ PLRLLA EV ++ ++A + LITG+E+ +
Sbjct: 24 LGPTNTGKTHLAIERMLAHSSGVIGLPLRLLAREVYNKIVDRAGPDAVALITGEEKIKPP 83
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAV 199
++ TVE D +DEIQ+ RG FT R L +E L G
Sbjct: 84 KPRYWVSTVEAMPRDLDVSFLAVDEIQIAADLERGHVFTDRILHRRGRDETLLLGAATMR 143
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
P+I+++L + + RLS L + +T IV FS +Y + + I
Sbjct: 144 PIIERLLP----GASIVTRPRLSQLEFAGDRKITRQPRRT--AIVAFSADEVYAIAELIR 197
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R ++V GSL P TR Q + S + D LVA+DA+GMGLNL++ + F++ +K
Sbjct: 198 -RQHGGAAVVLGSLSPRTRNAQVAMYQ--SGDVDYLVATDAVGMGLNLDVDHVAFASDRK 254
Query: 320 FDGVELRDLTVPEVKQIAGRAGR 342
+DG + R L E QIAGRAGR
Sbjct: 255 YDGYQFRRLNPSEFAQIAGRAGR 277
>gi|83941126|ref|ZP_00953588.1| helicase, putative [Sulfitobacter sp. EE-36]
gi|83846946|gb|EAP84821.1| helicase, putative [Sulfitobacter sp. EE-36]
Length = 975
Score = 125 bits (313), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 97/285 (34%), Positives = 141/285 (49%), Gaps = 15/285 (5%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQE 135
+V+ +GPTN+GKT A+ R+ + +G+ PLRLLA EV R+ + L+TG+E
Sbjct: 6 RVVAVLGPTNTGKTTYAIERMLAHRTGVIGLPLRLLAREVYDRIVALRGPSIVALVTGEE 65
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCG 194
R ++ TVE D +DEIQ+ RG FT R L +E G
Sbjct: 66 RIVPPRTQYWVCTVEAMPEGMGADLVAVDEIQLCADPERGHVFTDRLLRARGQHETLFMG 125
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
I ++ + + ER+S L+ S ++ IV FS +Y +
Sbjct: 126 SDTMRGSIAALVP----EAQFIRRERMSELIYSGQK--KISRMRPRSAIVGFSVENVYAI 179
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ I R K ++V G+L P TR Q + + E D LVA+DAIGMGLNL++ + F
Sbjct: 180 AELIR-RQKGGAAVVMGALSPRTRNAQVAMYQNG--EVDYLVATDAIGMGLNLDVDHVAF 236
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGR---YGSKFPVGEVTCLD 356
S + KFDG +R L E+ QIAGRAGR G+ G+ + LD
Sbjct: 237 SALSKFDGRRMRPLAPNELAQIAGRAGRGFKSGTFGVTGDASPLD 281
>gi|374333208|ref|YP_005083392.1| helicase domain-containing protein [Pseudovibrio sp. FO-BEG1]
gi|359345996|gb|AEV39370.1| helicase domain protein [Pseudovibrio sp. FO-BEG1]
Length = 935
Score = 124 bits (311), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 141/294 (47%), Gaps = 17/294 (5%)
Query: 98 LESSSSGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQEREEVDGAKHRAVTVEMADVV 155
+ + SSG+ PLRLLA EV RL K LITG+E+ + TVE
Sbjct: 1 MSAYSSGLIGLPLRLLAREVYGRLVEKKGPDLVALITGEEKIIPKTPRFWVSTVEAMPKD 60
Query: 156 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVK 214
D D IDE+Q+ G RG FT +L + E L G PL+++++ +
Sbjct: 61 LDVDFVAIDEVQLAGDLERGHVFTDRILNLRGREETLLLGSSTIRPLLEKLMP----GIN 116
Query: 215 VQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLP 274
V + R+S L + + IV FS +Y + + I R + ++V GSL
Sbjct: 117 VITRPRMSILTYAGSK--KITRLPRRSAIVAFSSDEVYAIAELIR-RQRGGAAVVLGSLS 173
Query: 275 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 334
P TR Q F + + D L+A+DA+GMGLNL++ I F+ +KFDG + R LT E
Sbjct: 174 PRTRNAQVDLFQNG--DVDWLIATDAVGMGLNLDVDHIAFAGHRKFDGYQYRQLTPAETG 231
Query: 335 QIAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDL 385
QIAGRAGR+ G+ G V D E + L EP +L+ PN D
Sbjct: 232 QIAGRAGRHLRDGTFGVTGRVPGFDEELVHQLESHEFEPLKVLQWRN--PNLDF 283
>gi|254487437|ref|ZP_05100642.1| Helicase conserved C-terminal domain protein [Roseobacter sp.
GAI101]
gi|214044306|gb|EEB84944.1| Helicase conserved C-terminal domain protein [Roseobacter sp.
GAI101]
Length = 968
Score = 124 bits (310), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 99/272 (36%), Positives = 134/272 (49%), Gaps = 30/272 (11%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQEREEVD 140
+GPTN+GKT A+ R+ + +G+ PLRLLA EV ++ + L+TG+ER
Sbjct: 4 LGPTNTGKTTYAIERMLAHRTGVIGLPLRLLAREVYDKIVALRGPSVVALVTGEERIVPP 63
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH--------- 191
++ TVE D +DEIQ+ RG FT LL + LH
Sbjct: 64 RTQYWVCTVEAMPEGMGADLVAVDEIQLCADPERGHVFTDRLL--RSRGLHETLFMGADT 121
Query: 192 LCGDPAA-VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHA 250
+ G AA VP Q I ER+S L V S ++ IV FS
Sbjct: 122 MRGTIAALVPKAQFI-----------KRERMSELT--YVGQKKISRMRPRSAIVGFSVEN 168
Query: 251 IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS 310
+Y + + I R K ++V G+L P TR Q + S E D LVA+DAIGMGLNL++
Sbjct: 169 VYAIAELIR-RQKGGAAVVMGALSPRTRNAQVEMYQ--SGEVDYLVATDAIGMGLNLDVD 225
Query: 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGR 342
+ FS + KFDG +R L E+ QIAGRAGR
Sbjct: 226 HVAFSALSKFDGRRMRQLAPNELAQIAGRAGR 257
>gi|83955685|ref|ZP_00964265.1| helicase, putative [Sulfitobacter sp. NAS-14.1]
gi|83839979|gb|EAP79155.1| helicase, putative [Sulfitobacter sp. NAS-14.1]
Length = 968
Score = 123 bits (308), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 100/287 (34%), Positives = 139/287 (48%), Gaps = 29/287 (10%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQEREEVD 140
+GPTN+GKT A+ R+ + +G+ PLRLLA EV R+ + L+TG+ER
Sbjct: 4 LGPTNTGKTTYAIERMLAHRTGVIGLPLRLLAREVYDRIVALRGPSIVALVTGEERIVPP 63
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE--LHLCGD--- 195
++ TVE D +DEIQ+ RG FT LL L + D
Sbjct: 64 RTQYWVCTVEAMPEGMGADLVAVDEIQLCADPERGHVFTDRLLRARGQHETLFMGSDTMR 123
Query: 196 ---PAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIY 252
A VP Q I + ER+S L+ S ++ IV FS +Y
Sbjct: 124 GSIAALVPEAQFIRR-----------ERMSELIYSGQK--KISRMRPRSAIVGFSVENVY 170
Query: 253 RLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRI 312
+ + I R K ++V G+L P TR Q + + E D LVA+DAIGMGLNL++ +
Sbjct: 171 AIAELIR-RQKGGAAVVMGALSPRTRNAQVAMYQNG--EVDYLVATDAIGMGLNLDVDHV 227
Query: 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGR---YGSKFPVGEVTCLD 356
FS + KFDG +R L E+ QIAGRAGR G+ G+ + LD
Sbjct: 228 AFSALSKFDGRRMRPLAPNELAQIAGRAGRGFKSGTFGVTGDASPLD 274
>gi|86747674|ref|YP_484170.1| helicase [Rhodopseudomonas palustris HaA2]
gi|86570702|gb|ABD05259.1| helicase [Rhodopseudomonas palustris HaA2]
Length = 1145
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 97/264 (36%), Positives = 136/264 (51%), Gaps = 14/264 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD---LITGQEREEV 139
+GPTN+GKTH A+ R+ + SG+ PLRLLA EV ++ V D L+TG+E+ +
Sbjct: 28 LGPTNTGKTHLAIERMVAHPSGLIGLPLRLLAREVYNKIVD-RVGPDAVALVTGEEKIKP 86
Query: 140 DGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAA 198
A+ TVE D +DE+Q+ RG FT LL E L G
Sbjct: 87 PKARFWVSTVEAMPRDLDVSFLAVDEVQIAADLERGHVFTDRLLRRRGRDETLLLGAATM 146
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
P+I+++L + + RLS L + +T IV FS +Y + + I
Sbjct: 147 RPIIERLLP----GASIVTRPRLSQLEFAGDRKLTRQPRRT--AIVAFSADEVYAIAELI 200
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
+ R ++V GSL P TR Q F S + D LVA+DAIGMGLNL++ + F++ +
Sbjct: 201 K-RQHGGAAVVLGSLSPRTRNAQVAMFQ--SGDVDYLVATDAIGMGLNLDVDHVAFASDR 257
Query: 319 KFDGVELRDLTVPEVKQIAGRAGR 342
KFDG + R L E QIAGRAGR
Sbjct: 258 KFDGYQFRRLNPSEFAQIAGRAGR 281
>gi|380478184|emb|CCF43738.1| ATP-dependent RNA helicase SUV3 [Colletotrichum higginsianum]
Length = 304
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 91/149 (61%), Gaps = 1/149 (0%)
Query: 44 IIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSS 103
++RS S ++ DL P W+P R R + LHVGPTNSGKT++AL LE++ S
Sbjct: 150 MLRSRLEKSSPRQKKLADLRFPQEWFPATRAIQRTIHLHVGPTNSGKTYRALKALENAKS 209
Query: 104 GIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHR-AVTVEMADVVSDYDCAV 162
GIY GPLRLLA E+ R C +ITG+E+ D + + TVEM + D AV
Sbjct: 210 GIYGGPLRLLAHEIYSRFQAKGRPCAMITGEEQRIPDSDNYFISCTVEMTPLNRLVDVAV 269
Query: 163 IDEIQMLGCKTRGFSFTRALLGICANELH 191
+DEIQM+ + RG+++++ALLG+ A E+
Sbjct: 270 LDEIQMISDRDRGWAWSQALLGVMAKEVQ 298
>gi|16124910|ref|NP_419474.1| photosynthesis protein modulator [Caulobacter crescentus CB15]
gi|13421872|gb|AAK22642.1| photosynthesis protein modulator [Caulobacter crescentus CB15]
Length = 824
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 89/245 (36%), Positives = 125/245 (51%), Gaps = 12/245 (4%)
Query: 102 SSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYD 159
+SG+ PLRLLA E+ R+ K + LITG+E+ A + TVE + + +
Sbjct: 5 ASGMIGLPLRLLAREIYDRIVKLRGKAAVALITGEEKIVPARAAYFVCTVEAMPLGREVE 64
Query: 160 CAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQSY 218
+DEIQ+ RG FT LL E G PL++++L D ++ S
Sbjct: 65 FLAVDEIQLCADPERGHIFTHRLLHARGKFETMFLGAGTMAPLVRRLLP----DAEIVSR 120
Query: 219 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 278
ER S L + + IV FS A+Y + + I R + ++V GSL P TR
Sbjct: 121 ERFSNLSYAGSK--KLTRLPRRTAIVAFSTDAVYAIAELIR-RQRGGAAVVMGSLSPRTR 177
Query: 279 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 338
Q + S E D LVA+DAIGMGLN+++ + F+ ++KFDG R L EV QIAG
Sbjct: 178 NAQVALYQ--SGEVDFLVATDAIGMGLNMDVDHVAFAGLRKFDGKRTRWLYPQEVGQIAG 235
Query: 339 RAGRY 343
RAGRY
Sbjct: 236 RAGRY 240
>gi|374290661|ref|YP_005037696.1| putative ATP-dependent DNA/RNA helicase [Azospirillum lipoferum 4B]
gi|357422600|emb|CBS85436.1| putative ATP-dependent DNA/RNA helicase [Azospirillum lipoferum 4B]
Length = 828
Score = 122 bits (307), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 94/282 (33%), Positives = 140/282 (49%), Gaps = 15/282 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQEREEVD 140
+GPTN+GKT+ A+ R+ SG+ PLRLLA E R+ K + L+TG+E+
Sbjct: 5 LGPTNTGKTYLAIERMLGHRSGMIGFPLRLLARENYDRIVSIKGRQAVALVTGEEKILPP 64
Query: 141 GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAV 199
+ TVE + D +DEIQ+ RG FT LL E + G +
Sbjct: 65 NPSYWVCTVESMPLDRAVDFLAVDEIQLCADPERGHIFTDRLLNARGMVETMVLGSDSMQ 124
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
P+I++++ + S R S L + + +V FS +Y + + I
Sbjct: 125 PMIRRLVP----KAEFISRPRFSQLT--YAGYKKLTRLPPRSAVVAFSATDVYAIAEMIR 178
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
R + ++V G+L P TR Q + + E D LVA+DAIGMGLN+++ + F+ + K
Sbjct: 179 -RQRGGTAVVLGALSPRTRNAQVGLYQ--AGEVDYLVATDAIGMGLNMDVDHVAFARIVK 235
Query: 320 FDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
FDG R L EV QIAGRAGR+ G+ EV LD++
Sbjct: 236 FDGFAPRRLRPAEVAQIAGRAGRHMRDGTFGTTDEVGELDAD 277
>gi|91974763|ref|YP_567422.1| helicase-like protein [Rhodopseudomonas palustris BisB5]
gi|91681219|gb|ABE37521.1| helicase-like [Rhodopseudomonas palustris BisB5]
Length = 1119
Score = 122 bits (307), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 97/264 (36%), Positives = 136/264 (51%), Gaps = 14/264 (5%)
Query: 83 VGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCD---LITGQEREEV 139
+GPTN+GKTH A+ R+ + SG+ PLRLLA EV ++ V D L+TG+E+ +
Sbjct: 23 LGPTNTGKTHLAIERMVAHPSGLIGLPLRLLAREVYNKIVD-RVGPDAVALVTGEEKIKP 81
Query: 140 DGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAA 198
A+ TVE D +DE+Q+ RG FT LL E L G
Sbjct: 82 PKARFWVSTVEAMPRDLDVSFLAVDEVQIAADLERGHVFTDRLLRRRGRDETLLLGAATM 141
Query: 199 VPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAI 258
P+I+++L + + RLS L + +T IV FS +Y + + I
Sbjct: 142 RPIIERLLP----GASIVTRPRLSQLEFAGDRKLTRQPRRT--AIVAFSADEVYAIAELI 195
Query: 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK 318
+ R ++V GSL P TR Q F S + D LVA+DAIGMGLNL++ + F++ +
Sbjct: 196 K-RQHGGAAVVLGSLSPRTRNAQVAMFQ--SGDVDYLVATDAIGMGLNLDVDHVAFASDR 252
Query: 319 KFDGVELRDLTVPEVKQIAGRAGR 342
KFDG + R L E QIAGRAGR
Sbjct: 253 KFDGYQFRRLNPSEFAQIAGRAGR 276
>gi|288959505|ref|YP_003449846.1| helicase C-terminal domain-containing protein [Azospirillum sp.
B510]
gi|288911813|dbj|BAI73302.1| helicase C-terminal domain protein [Azospirillum sp. B510]
Length = 846
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 95/286 (33%), Positives = 142/286 (49%), Gaps = 15/286 (5%)
Query: 79 VILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQER 136
V+ +GPTN+GKT+ A+ R+ SG+ PLRLLA E R+ K + L+TG+E+
Sbjct: 18 VVAVLGPTNTGKTYLAIERMLGHRSGMIGFPLRLLARENYDRIVRIKGRNAVALVTGEEK 77
Query: 137 EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGD 195
+ TVE + D +DEIQ+ RG FT LL E + G
Sbjct: 78 ILPPNPSYWVCTVESMPLDRPVDFLAVDEIQLCADPERGHIFTDRLLNARGMVETMVLGS 137
Query: 196 PAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLK 255
+ P+I++++ + S R S L + + +V FS +Y +
Sbjct: 138 DSMQPMIRRLVP----KAEFVSRPRFSQLT--YAGHRKLTRLPPRSAVVAFSATDVYAIA 191
Query: 256 KAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFS 315
+ I R + ++V G+L P TR Q + + E D LVA+DAIGMGLN+++ + F+
Sbjct: 192 ELIR-RQRGGTAVVLGALSPRTRNAQVGLYQ--AGEVDYLVATDAIGMGLNMDVDHVAFA 248
Query: 316 TMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ KFDG R L EV QIAGRAGR+ G+ EV LD++
Sbjct: 249 RIVKFDGFAPRRLRPAEVAQIAGRAGRHMRDGTFGTTDEVGELDAD 294
>gi|229365483|dbj|BAH57991.1| hypothetical protein [Acetobacter lovaniensis]
Length = 634
Score = 122 bits (306), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 99/281 (35%), Positives = 138/281 (49%), Gaps = 26/281 (9%)
Query: 100 SSSSGIYCGPLRLLAWEVAKRLNKAN--VSCDLITGQEREEVDGAKHRAVTVEMADVVSD 157
+ SSGI PLRLLA E +R+ K S LITG+E+ A+ + TVE
Sbjct: 3 AHSSGIIGFPLRLLARENYERMVKLKGVRSVGLITGEEKIIPPQARWFSCTVEAMPSDRK 62
Query: 158 YDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQ 216
+ +DEIQ+ RG FT LL +E G PL++ +++ D+++
Sbjct: 63 VEFVAVDEIQLCADPERGHVFTDRLLNARGRSETLFLGAETIAPLLKTLIR----DIEID 118
Query: 217 SYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 276
+ RLS L S + IV FS +Y + + I R + C++V G L P
Sbjct: 119 TRPRLSSLT--YTGHMRLSRLPARTAIVAFSMAEVYAIAELIR-RKRGGCAVVMGQLSPR 175
Query: 277 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 336
TR Q + + E D LVA+DAIGMGLN++I I F+ + KFDG R LT E QI
Sbjct: 176 TRNAQVALYQN--REVDYLVATDAIGMGLNMDIRHIAFANITKFDGHRNRLLTPAEAAQI 233
Query: 337 AGRAGR------YGSK-----FPVGEVTCLDS---EDLPLL 363
AGRAGR +G+ FP G V +++ E LP L
Sbjct: 234 AGRAGRGTQDGTFGTTGECPPFPEGMVEAIETHHFEPLPFL 274
>gi|84500892|ref|ZP_00999127.1| helicase, putative [Oceanicola batsensis HTCC2597]
gi|84390959|gb|EAQ03377.1| helicase, putative [Oceanicola batsensis HTCC2597]
Length = 999
Score = 122 bits (305), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 99/288 (34%), Positives = 137/288 (47%), Gaps = 17/288 (5%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQE 135
++ +GPTN+GKTH A+ R+ +G+ PLRLLA EV ++ + L+TG+E
Sbjct: 6 RITAVLGPTNTGKTHYAIERMLGYRTGVIGLPLRLLAREVYDKIVALRGPSVVALVTGEE 65
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE--LHLC 193
R + TVE D IDEIQ+ RG FT LL L L
Sbjct: 66 RIVPPRTAYWVCTVEAMPEGMGADFLAIDEIQLCADPERGHVFTDRLLRARGQHETLFLG 125
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
D + + + T ER+S L S + IV FS +Y
Sbjct: 126 SDTMRGKIADLVPEAT-----FMRRERMSHLSYAGSK--KISRMPPRSAIVGFSVDNVYA 178
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRII 313
+ + I R K ++V G+L P TR Q + + + D LVA+DAIGMGLNL+I+ +
Sbjct: 179 MAELIR-RQKGGAAVVMGALSPRTRNAQVALYQNG--DVDYLVATDAIGMGLNLDINHVA 235
Query: 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
FS + KFDG +R L E+ QIAGRAGR G+ GE L+ E
Sbjct: 236 FSALSKFDGRRMRPLAPNELAQIAGRAGRGMADGTFGVTGEAAPLEDE 283
>gi|86171475|ref|XP_966219.1| ATP dependent DEAD-box helicase, putative [Plasmodium falciparum
3D7]
gi|46361185|emb|CAG25049.1| ATP dependent DEAD-box helicase, putative [Plasmodium falciparum
3D7]
Length = 1137
Score = 120 bits (301), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/148 (35%), Positives = 92/148 (62%), Gaps = 2/148 (1%)
Query: 140 DGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAV 199
D H T+EM + +YDCA++DEIQM+ ++RG ++T L+ + + +++LCG +
Sbjct: 407 DNVTHTVCTIEMTPLNKEYDCAIVDEIQMINNESRGHAWTNVLMNLNSKDIYLCGSEYII 466
Query: 200 PLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIE 259
LI+ + + D + ++ +ERL L L + ++QTGDCI+TFSR+ I LK+ +E
Sbjct: 467 DLIKNLADILNDKLIIKKFERLGSL-HLQEYNTTLEDVQTGDCIITFSRNNIMLLKRILE 525
Query: 260 SRGKHLCSIVYGSLPPETRTRQATRFND 287
K + ++YGSLPP+++ +Q FN+
Sbjct: 526 KYNKRVF-VIYGSLPPDSKKKQINMFNE 552
Score = 80.5 bits (197), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 53/73 (72%), Gaps = 3/73 (4%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG---SKFPVG 350
+L+A+D IGMGLN+NI RIIF ++KK+DG LR LT+ E QIAGRAGR+ + +G
Sbjct: 642 ILIATDVIGMGLNINIKRIIFYSLKKYDGDILRYLTMSEFLQIAGRAGRFNPSCTNKSIG 701
Query: 351 EVTCLDSEDLPLL 363
+TC+ +D+ +L
Sbjct: 702 YITCVHLDDINIL 714
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/60 (55%), Positives = 43/60 (71%)
Query: 76 VRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQE 135
VR + L+VGP NSGKT+ A +L S +G+YC PLRLLAWEV +L + N +L+TGQE
Sbjct: 256 VRNIHLYVGPPNSGKTYHAFQKLMLSKNGLYCSPLRLLAWEVYSKLTRMNKKVNLLTGQE 315
>gi|58040347|ref|YP_192311.1| ATP-dependent DNA helicase [Gluconobacter oxydans 621H]
gi|58002761|gb|AAW61655.1| ATP-dependent DNA helicase [Gluconobacter oxydans 621H]
Length = 815
Score = 119 bits (297), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 90/246 (36%), Positives = 126/246 (51%), Gaps = 12/246 (4%)
Query: 100 SSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQEREEVDGAKHRAVTVEMADVVSD 157
+ +SGI PLRLLA E +RL K S LITG+E+ GA+ + TVE +
Sbjct: 3 AHASGIIGFPLRLLARENYERLVKIKGERSVALITGEEKIVPPGARWFSCTVEAMPLDRK 62
Query: 158 YDCAVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQ 216
+ IDEIQ+ RG FT LL E G PL+Q++ V G ++ ++
Sbjct: 63 AEFVAIDEIQLASDPDRGHIFTDRLLHARGTVETLFLGAETIRPLLQKL--VPGIEIDIR 120
Query: 217 SYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPE 276
+ RLS L + S + IV FS +Y L + I R + C+++ G L P
Sbjct: 121 T--RLSSLA--STGHTKLSRLPPRSAIVAFSMSEVYALAEVIRRR-RGGCAVIMGQLSPR 175
Query: 277 TRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQI 336
TR Q + + E D LVA+DAIGMGLN+++ + + + KFDG R L E+ QI
Sbjct: 176 TRNAQVELYQN--REVDYLVATDAIGMGLNMDVDHVALAQLSKFDGTVPRPLFPQEIAQI 233
Query: 337 AGRAGR 342
AGRAGR
Sbjct: 234 AGRAGR 239
>gi|209965703|ref|YP_002298618.1| ATP-dependent helicase MgpS [Rhodospirillum centenum SW]
gi|209959169|gb|ACI99805.1| ATP-dependent helicase MgpS [Rhodospirillum centenum SW]
Length = 1144
Score = 118 bits (295), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 136/269 (50%), Gaps = 12/269 (4%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQE 135
+V+ +GPTN+GKT+ A+ R+ + SG+ PLRLLA E ++ K + L+TG+E
Sbjct: 17 RVMAVLGPTNTGKTYLAMERMLAHRSGMIGFPLRLLARENYDKVVRLKGPKAVALVTGEE 76
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCG 194
+ ++ TVE + +DEIQ+ RG FT R L + E G
Sbjct: 77 KIIPPAPQYWVCTVESMPLDRQVQFLAVDEIQLCADPERGHIFTDRLLHARGSEETMFLG 136
Query: 195 DPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL 254
LIQ+++ + S R S L + + + IV FS +Y +
Sbjct: 137 ADTVRGLIQKLVP----RAEYISRPRFSNLS--HAGHKKLTRLPPRSAIVAFSVTDVYAM 190
Query: 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314
+ + R + ++V G+L P TR Q + + + D LVA+DA+GMGLN+++ + F
Sbjct: 191 AEMVR-RSRGGTAVVMGALSPRTRNAQVAMYQ--AGDVDYLVATDAVGMGLNMDVDSVWF 247
Query: 315 STMKKFDGVELRDLTVPEVKQIAGRAGRY 343
+ + KFDG + R L EV QIAGRAGR+
Sbjct: 248 ARLSKFDGHQPRRLKATEVAQIAGRAGRH 276
>gi|413918552|gb|AFW58484.1| hypothetical protein ZEAMMB73_992465 [Zea mays]
Length = 250
Score = 117 bits (293), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 57/108 (52%), Positives = 69/108 (63%), Gaps = 1/108 (0%)
Query: 61 DLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR 120
DLT PHTWYP AR R+V+ H GPTNSGKTH AL+ ++ SG+YC PLRLL E+ +
Sbjct: 16 DLTAPHTWYPSARAMRRRVVYHCGPTNSGKTHNALASFSAAKSGVYCSPLRLLTIEIFDK 75
Query: 121 LNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQM 168
+N VSC L TGQE +EV A H A T+EM VV D D + M
Sbjct: 76 VNTTGVSCSLRTGQEVKEVAFASHLACTIEM-HVVDRRDLRATDAVGM 122
Score = 70.1 bits (170), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 74/150 (49%), Gaps = 34/150 (22%)
Query: 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 354
L A+DA+GM LN NI R++F T+ K+DG ++ ++VP + C
Sbjct: 114 LRATDAVGMRLNFNIRRVVFYTLMKYDGEKM--VSVPASQ-------------------C 152
Query: 355 LDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSEN 414
LD EP E GLFP F+ + M++ P+ + +L+ F + ++ +
Sbjct: 153 LD------------EPVKEAEKVGLFPTFEQLEMFATHFPELAFNNLLDKFRDTCRIDDT 200
Query: 415 YFFANCEEVLKVATVIDQLP-LRLHEKYLF 443
YF + + KVA++I+ + L L + Y+F
Sbjct: 201 YFMCQHDSMKKVASMIESVQGLSLKDHYIF 230
>gi|385303196|gb|EIF47286.1| atp-dependent rna component of the mitochondrial degradosome along
with the rnase dss1p [Dekkera bruxellensis AWRI1499]
Length = 127
Score = 116 bits (291), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 56/123 (45%), Positives = 89/123 (72%), Gaps = 5/123 (4%)
Query: 108 GPLRLLAWEVAKRLNKANVSCDLITGQERE-EVDGAKHRAV----TVEMADVVSDYDCAV 162
GPLRLLA EV + K N +C+L+TG+E ++DG ++A T+EM + YD V
Sbjct: 3 GPLRLLAREVYDKFQKKNXNCNLVTGEEVLIDIDGNGNKAGITSGTIEMLSMSESYDVVV 62
Query: 163 IDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLS 222
+DEIQM+G + RG ++T A+LG+ A E+HLCG+ +AVP+I++++ +TGDD+++++Y+RL
Sbjct: 63 VDEIQMIGDQYRGSAWTNAVLGVRAKEIHLCGEISAVPIIKRLVAMTGDDLEIKTYKRLG 122
Query: 223 PLV 225
LV
Sbjct: 123 KLV 125
>gi|413918549|gb|AFW58481.1| hypothetical protein ZEAMMB73_323635 [Zea mays]
Length = 123
Score = 116 bits (290), Expect = 3e-23, Method: Composition-based stats.
Identities = 53/92 (57%), Positives = 64/92 (69%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
TDLT PHTWYP R R+V+ H GPTNSGKTH AL+ ++ SG+YC PLRLLA E+
Sbjct: 15 TDLTAPHTWYPSTRAMRRRVVYHCGPTNSGKTHNALASFSAAKSGVYCSPLRLLAIEIFD 74
Query: 120 RLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151
++N VSC L TGQE +EV A H A T+EM
Sbjct: 75 KVNATGVSCSLRTGQEVKEVAFASHLACTIEM 106
>gi|294678314|ref|YP_003578929.1| helicase domain-containing protein [Rhodobacter capsulatus SB 1003]
gi|294477134|gb|ADE86522.1| helicase domain protein [Rhodobacter capsulatus SB 1003]
Length = 947
Score = 114 bits (284), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 98/278 (35%), Positives = 136/278 (48%), Gaps = 18/278 (6%)
Query: 100 SSSSGIYCGPLRLLAWEVAKRLNKANVSC--DLITGQEREEVDGAKHRAVTVE-MADVVS 156
S +G+ PLRLLA EV R+ KA L+TG+ER + A++ T E M +V +
Sbjct: 3 SHRTGVIGLPLRLLAREVYDRIVKARGPSVVALVTGEERIVPERAQYWVCTTEAMPEVGA 62
Query: 157 DYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKV 215
D+ IDEIQ+ RG FT LL + +E G A I ++ V+
Sbjct: 63 DF--VAIDEIQLCADPERGHVFTERLLYMRGLHETLFLGSDAMKGAIAALVP----KVQF 116
Query: 216 QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPP 275
ERLS L S ++ IV FS +Y + + I R K ++V G+L P
Sbjct: 117 ARRERLSKLSWAGSK--KISRMKPRAAIVGFSVENVYAIAELI-RRQKGGAAVVMGALSP 173
Query: 276 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQ 335
TR Q + + + D LVA+DAIGMGLNL+I + FS KFDG +R L E+ Q
Sbjct: 174 RTRNAQVAMYQNG--DVDYLVATDAIGMGLNLDIEHVAFSATAKFDGRRMRHLFPHELGQ 231
Query: 336 IAGRAGRY---GSKFPVGEVTCLDSEDLPLLHKSLLEP 370
IAGRAGR+ G+ GE L E + + + P
Sbjct: 232 IAGRAGRHTTDGTFGITGEAHPLPEEVIEAIEEHRFAP 269
>gi|238567947|ref|XP_002386345.1| hypothetical protein MPER_15452 [Moniliophthora perniciosa FA553]
gi|215438015|gb|EEB87275.1| hypothetical protein MPER_15452 [Moniliophthora perniciosa FA553]
Length = 115
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 54/106 (50%), Positives = 77/106 (72%), Gaps = 2/106 (1%)
Query: 158 YDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQ-VTGDDVKVQ 216
+D AVIDEIQM+G +RG+++T A+LGICA E+HLCG+ AVP+IQ +L+ T D ++++
Sbjct: 8 FDIAVIDEIQMIGDSSRGYAWTNAVLGICAPEIHLCGEETAVPVIQALLKGNTNDTLEIR 67
Query: 217 SYERLSPLVPLNVPL-GSFSNIQTGDCIVTFSRHAIYRLKKAIESR 261
YERLSPL L G +N++ GDCIV FSR I++ KKA+ +
Sbjct: 68 RYERLSPLTVSTESLQGELANVKKGDCIVGFSRRGIFKNKKAVRKK 113
>gi|302804027|ref|XP_002983766.1| hypothetical protein SELMODRAFT_422950 [Selaginella moellendorffii]
gi|300148603|gb|EFJ15262.1| hypothetical protein SELMODRAFT_422950 [Selaginella moellendorffii]
Length = 595
Score = 113 bits (282), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/219 (32%), Positives = 101/219 (46%), Gaps = 45/219 (20%)
Query: 266 CSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVEL 325
CS+VYGSLPPETRT+QA RFN A +F +LVASDAIGMGLNLNI +
Sbjct: 353 CSVVYGSLPPETRTKQAERFNKADEDFSILVASDAIGMGLNLNIQHHLHE---------- 402
Query: 326 RDLTVPEVKQIAGRAGRYGSKFP---VGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPN 382
AG+ + S P E C + + + + FP
Sbjct: 403 -----------AGQVRWHRSLLPQCHASEANCRPNWKIQV----------QISCCRSFPT 441
Query: 383 FDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYL 442
FD I +Y +P+ ILE F+ A + + ++D +PL + ++L
Sbjct: 442 FDQIGLYCSFYPNFPFSAILEKFI-----------ATVTVLCLQSRMLDDIPLPMDSRFL 490
Query: 443 FCISPVDMNDDISSQGLTQFATNYSKKGIVQLREIFTPG 481
FC PVD ++ I L +FA NY+ V L+ + TP
Sbjct: 491 FCTCPVDKDNGIIMGALLEFARNYAVNRNVPLKRLLTPA 529
>gi|170750104|ref|YP_001756364.1| helicase domain-containing protein [Methylobacterium radiotolerans
JCM 2831]
gi|170656626|gb|ACB25681.1| helicase domain protein [Methylobacterium radiotolerans JCM 2831]
Length = 1081
Score = 112 bits (280), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 124/245 (50%), Gaps = 14/245 (5%)
Query: 103 SGIYCGPLRLLAWEVAKRLNKANVSCD---LITGQEREEVDGAKHRAVTVEMADVVSDYD 159
+G+ PLRLLA EV R+ A V + L+TG+E+ + D ++ T+E D
Sbjct: 6 TGMIGLPLRLLAREVYLRV-VAKVGPEKVALVTGEEKIKPDRPRYWICTIEAMPRDLDVA 64
Query: 160 CAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAVPLIQQILQVTGDDVKVQSY 218
IDEIQ+ RG FT LL + E L G +PL+Q ++ +V +
Sbjct: 65 FVAIDEIQLAADMDRGHVFTDRLLYVRGREETLLIGSSTMLPLVQDLIP----NVHTTTR 120
Query: 219 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 278
RLS L S + IV FS +Y + + I R + ++V G+L P TR
Sbjct: 121 PRLSQLTFAGEK--RLSRLPRRTAIVAFSAEEVYAIAELIR-RQRGGAAVVLGALSPRTR 177
Query: 279 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 338
Q + + + D LVA+DA+GMGLNL++ + F+ K+DG R LT E+ QIAG
Sbjct: 178 NAQVEMYQ--AGDVDYLVATDAVGMGLNLDVDHVAFAANWKYDGTRFRKLTPAEMGQIAG 235
Query: 339 RAGRY 343
RAGR+
Sbjct: 236 RAGRH 240
>gi|1103724|emb|CAA90562.1| MgpS [Rhodobacter sphaeroides]
Length = 930
Score = 110 bits (275), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 126/262 (48%), Gaps = 17/262 (6%)
Query: 103 SGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDC 160
+G+ PLRLLA EV R+ + L+TG+ER + ++ TVE + D
Sbjct: 6 TGVIGLPLRLLAREVYDRIVAQRGPSVVALVTGEERIVPERTQYWVCTVEAMPMEIGADF 65
Query: 161 AVIDEIQMLGCKTRGFSFTRALLGI--CANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 218
+DEIQ+ G RG FT LL + L D +++ + V
Sbjct: 66 VAVDEIQLCGDPERGHVFTDRLLRARGLVETMFLGSD-----VMRGAIAALVPHVTFLRR 120
Query: 219 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 278
ER S L S + IV FS +Y + + I R K C++V G+L P TR
Sbjct: 121 ERFSTLSYAGSK--KISRMPPRSAIVGFSVDNVYAIAELIR-RQKGGCAVVMGALSPRTR 177
Query: 279 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 338
Q + + + D LVA+DAIGMGLNL+I + FS+ KFDG +R L E+ QIAG
Sbjct: 178 NAQVAPYQNG--DVDYLVATDAIGMGLNLDIRHVAFSSTVKFDGRRMRPLFPHELGQIAG 235
Query: 339 RAGRY---GSKFPVGEVTCLDS 357
RAGR+ G+ GE + LD
Sbjct: 236 RAGRHTEAGTFGVTGEASPLDE 257
>gi|427427310|ref|ZP_18917354.1| ATP-dependent DNA helicase [Caenispirillum salinarum AK4]
gi|425883236|gb|EKV31912.1| ATP-dependent DNA helicase [Caenispirillum salinarum AK4]
Length = 821
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 91/263 (34%), Positives = 127/263 (48%), Gaps = 15/263 (5%)
Query: 102 SSGIYCGPLRLLAWEVAKRLNKANV--SCDLITGQEREEVDGAKHRAVTVEMADVVSDYD 159
++G+ PLRLLA E R+ KA LITG+E+ TVE + D
Sbjct: 4 ATGMIGFPLRLLARENYDRVVKAKGPHRVALITGEEKIIPPNPAWWICTVESMPLDRRVD 63
Query: 160 CAVIDEIQMLGCKTRGFSFT-RALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 218
+DEIQ+ RG FT R L E G PL+ ++ V G + Q+
Sbjct: 64 FLAVDEIQLCADPDRGHIFTDRLLRARGMRETMFLGSETIKPLMYKL--VPG--CEFQTR 119
Query: 219 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 278
RLS L + + IV FS +Y + + + R + ++V G+L P TR
Sbjct: 120 PRLSQLKYAGP--KKLTRLPRRAAIVAFSAADVYAIAELVR-RQRGGAAVVLGALSPRTR 176
Query: 279 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 338
Q F + E D LVA+DAIGMGLN+++ + F+ ++KFDG R LT PEV QIAG
Sbjct: 177 NAQVAMFQ--AGEVDHLVATDAIGMGLNMDVDHVAFAALRKFDGHSPRALTAPEVAQIAG 234
Query: 339 RAGRY---GSKFPVGEVTCLDSE 358
RAGR G+ G+ +D E
Sbjct: 235 RAGRGMNDGTFGTTGDAGTIDPE 257
>gi|77462980|ref|YP_352484.1| ATP-dependent helicase, MgpS [Rhodobacter sphaeroides 2.4.1]
gi|77387398|gb|ABA78583.1| putative ATP-dependent helicase, MgpS [Rhodobacter sphaeroides
2.4.1]
Length = 930
Score = 110 bits (274), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 90/262 (34%), Positives = 126/262 (48%), Gaps = 17/262 (6%)
Query: 103 SGIYCGPLRLLAWEVAKRL--NKANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDC 160
+G+ PLRLLA EV R+ + L+TG+ER + ++ TVE + D
Sbjct: 6 TGVIGLPLRLLAREVYDRIVAQRGPSVVALVTGEERIVPERTQYWVCTVEAMPMEIGADF 65
Query: 161 AVIDEIQMLGCKTRGFSFTRALLGI--CANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 218
+DEIQ+ G RG FT LL + L D +++ + V
Sbjct: 66 VAVDEIQLCGDPERGHVFTDRLLRARGLVETMFLGSD-----VMRGAIAALVPHVTFLRR 120
Query: 219 ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 278
ER S L S + IV FS +Y + + I R K C++V G+L P TR
Sbjct: 121 ERFSTLSYAGSK--KISRMPPRSAIVGFSVDNVYAIAELIR-RQKGGCAVVMGALSPRTR 177
Query: 279 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAG 338
Q + + + D LVA+DAIGMGLNL+I + FS+ KFDG +R L E+ QIAG
Sbjct: 178 NAQVALYQNG--DVDYLVATDAIGMGLNLDIRHVAFSSTVKFDGRRMRPLFPHELGQIAG 235
Query: 339 RAGRY---GSKFPVGEVTCLDS 357
RAGR+ G+ GE + LD
Sbjct: 236 RAGRHTEAGTFGVTGEASPLDE 257
>gi|83952974|ref|ZP_00961701.1| helicase, putative [Roseovarius nubinhibens ISM]
gi|83835636|gb|EAP74938.1| helicase, putative [Roseovarius nubinhibens ISM]
Length = 953
Score = 105 bits (261), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 137/291 (47%), Gaps = 19/291 (6%)
Query: 103 SGIYCGPLRLLAWEVAKRLN--KANVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDC 160
+G+ PLRLLA EV +++ + L+TG+ER K+ TVE D
Sbjct: 6 TGVIGLPLRLLAREVYEKIVALRGPSVVALVTGEERIVPPRTKYWVCTVEAMPQGLGADF 65
Query: 161 AVIDEIQMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVTGDDVKVQSYE 219
+DEIQ+ RG FT LL + E G +I ++ V G V + E
Sbjct: 66 VAVDEIQLCADPERGHVFTDRLLHMRGQKETQFLGAATMRGVIAEL--VPG--VSFLTRE 121
Query: 220 RLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRT 279
RLS L + + IV FS +Y + + + R K ++V G+L P TR
Sbjct: 122 RLSQLAYTGPK--KLAKMPGRSAIVGFSVDNVYAIAELLR-RQKGGAAVVMGALSPRTRN 178
Query: 280 RQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGR 339
Q + + + D LVA+DAIGMGLNL++ + FS++ KFDG +R L E+ QIAGR
Sbjct: 179 AQVELYQNG--DVDYLVATDAIGMGLNLDVDHVAFSSLTKFDGRRMRMLAPNELAQIAGR 236
Query: 340 AG---RYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIY 387
AG R+G+ GE + E + + P LE + N DL +
Sbjct: 237 AGRGMRHGTFGVTGEAPEMSDEVVEAITNHRFAPISRLE----WRNSDLRF 283
>gi|197102134|ref|NP_001125539.1| ATP-dependent RNA helicase SUPV3L1, mitochondrial [Pongo abelii]
gi|55728390|emb|CAH90939.1| hypothetical protein [Pongo abelii]
Length = 341
Score = 104 bits (259), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/101 (50%), Positives = 66/101 (65%), Gaps = 4/101 (3%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119
+DL P WYP AR RK+I H GPTNSGKT+ A+ + S+ SG+YCGPL+LLA E+ +
Sbjct: 183 SDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFE 242
Query: 120 RLNKANVSCDLITGQEREEVD----GAKHRAVTVEMADVVS 156
+ N A V CDL+TG+ER V A H + TVEM V +
Sbjct: 243 KSNAAGVPCDLVTGEERVIVQPNGKQASHVSCTVEMCSVTT 283
>gi|218516034|ref|ZP_03512874.1| putative ATP-dependent DNA helicase protein [Rhizobium etli 8C-3]
Length = 465
Score = 102 bits (254), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 114/232 (49%), Gaps = 11/232 (4%)
Query: 130 LITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE 189
L+TG+E+ A+ TVE + IDE+Q+ G RG FT +L + E
Sbjct: 11 LVTGEEKISPANARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGRE 70
Query: 190 LHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRH 249
L A ++ ILQ+ + + RLS L + + IV FS
Sbjct: 71 ETLLLGAAT---MRPILQLLLPGITIVERPRLSHL--FYAGQKKITRLPQRSAIVAFSAD 125
Query: 250 AIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNI 309
+Y + + I R + ++V G+L P TR Q + E+ LVA+DAIGMGLNL++
Sbjct: 126 EVYAIAELIR-RQRGGAAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAIGMGLNLDV 182
Query: 310 SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
+ F+ +KFDG + R+L E+ QIAGRAGR+ G+ G+V+ D E
Sbjct: 183 DHVAFAQDRKFDGYQFRNLNPGELGQIAGRAGRHVRDGTFGVTGQVSPFDEE 234
>gi|413918545|gb|AFW58477.1| hypothetical protein ZEAMMB73_372211 [Zea mays]
Length = 161
Score = 99.0 bits (245), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/144 (37%), Positives = 85/144 (59%), Gaps = 2/144 (1%)
Query: 303 MGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPL 362
MGLNLNI R++F T+ K+DG ++ + +VKQIAGRAGR S +P G T DL
Sbjct: 1 MGLNLNIRRVVFYTLMKYDGEKMVSVPASQVKQIAGRAGRRSSVYPHGLATTF-MFDLDY 59
Query: 363 LHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEE 422
L K L EP E GLFP+F+ + M++ P+ + +L+ F + ++ + YF +
Sbjct: 60 LTKCLDEPVKEAEKVGLFPSFEQLEMFATHFPELAFNNLLDKFRDTCRIDDTYFMCQHDS 119
Query: 423 VLKVATVIDQLP-LRLHEKYLFCI 445
+ KVA++I+ + L L + Y+F +
Sbjct: 120 MKKVASMIESVQGLSLKDHYIFLL 143
>gi|387213081|gb|AFJ69157.1| hypothetical protein NGATSA_2056000, partial [Nannochloropsis
gaditana CCMP526]
Length = 94
Score = 92.0 bits (227), Expect = 6e-16, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 60/85 (70%)
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSF 234
G+++TR +LG+ A E+HLCG PA V ++Q++ + GDDV+V+ Y RLSPL P + S+
Sbjct: 1 GWAWTRVVLGLPAIEVHLCGTPAFVEIVQELAREIGDDVEVREYARLSPLKPQKKAVASW 60
Query: 235 SNIQTGDCIVTFSRHAIYRLKKAIE 259
+ I+ GDC+V FSR ++ LK IE
Sbjct: 61 AEIEAGDCVVAFSRKKLFELKNEIE 85
>gi|218459591|ref|ZP_03499682.1| putative ATP-dependent DNA helicase protein [Rhizobium etli Kim 5]
Length = 279
Score = 85.5 bits (210), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 48/120 (40%), Positives = 70/120 (58%), Gaps = 6/120 (5%)
Query: 242 CIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI 301
IV FS +Y + + I R + ++V G+L P TR Q + E+ LVA+DAI
Sbjct: 5 AIVAFSADEVYAIAELIR-RQRGGAAVVLGALSPRTRNAQVALYQAGDVEY--LVATDAI 61
Query: 302 GMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLDSE 358
GMGLNL++ + F+ +KFDG + R+L E+ QIAGRAGR+ G+ G+V+ D E
Sbjct: 62 GMGLNLDVDHVAFAQDRKFDGYQFRNLNPGELGQIAGRAGRHVRDGTFGVTGQVSPFDEE 121
>gi|218662319|ref|ZP_03518249.1| helicase domain protein [Rhizobium etli IE4771]
Length = 224
Score = 85.1 bits (209), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 102/219 (46%), Gaps = 10/219 (4%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR-LNKANV-SCDLITGQ 134
R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV R + K V + L+TG+
Sbjct: 13 RGVTAMLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGVQNVALVTGE 72
Query: 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLC 193
E+ A+ TVE + IDE+Q+ G RG FT +L + E L
Sbjct: 73 EKISPANARFSVCTVEAMPRDTKAAFVAIDEVQLAGDLERGHIFTDRILHLRGREETLLL 132
Query: 194 GDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYR 253
G P++QQ+L + + RLS L + + IV FS +Y
Sbjct: 133 GAATMRPILQQLL----PGITIVERPRLSHL--FYAGQKKITRLPQRSAIVAFSADEVYA 186
Query: 254 LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEF 292
+ + I R + ++V G+L P TR Q + E+
Sbjct: 187 IAELIR-RQRGGAAVVLGALSPRTRNAQVALYQAGDVEY 224
>gi|321453701|gb|EFX64912.1| hypothetical protein DAPPUDRAFT_65819 [Daphnia pulex]
Length = 94
Score = 80.1 bits (196), Expect = 2e-12, Method: Composition-based stats.
Identities = 41/91 (45%), Positives = 54/91 (59%), Gaps = 5/91 (5%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128
YP AR RK++ H GPTNSGKT+ L R +S+ YCGP + L EV + N+ C
Sbjct: 1 YPEARAFTRKIVFHSGPTNSGKTYHVLERFCNSNQESYCGPFKFLTSEVYCKCNQRGCPC 60
Query: 129 DLITGQER---EEVDG--AKHRAVTVEMADV 154
DLITG+ER ++D + H + TVEM V
Sbjct: 61 DLITGEERNFANDIDKSPSSHVSCTVEMISV 91
>gi|126461854|ref|YP_001042968.1| helicase domain-containing protein [Rhodobacter sphaeroides ATCC
17029]
gi|126103518|gb|ABN76196.1| helicase domain protein [Rhodobacter sphaeroides ATCC 17029]
Length = 786
Score = 79.7 bits (195), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/94 (46%), Positives = 59/94 (62%), Gaps = 5/94 (5%)
Query: 266 CSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVEL 325
C++V G+L P TR Q + + + D LVA+DAIGMGLNL+I + FS+ KFDG +
Sbjct: 14 CAVVMGALSPRTRNAQVALYQNG--DVDYLVATDAIGMGLNLDIRHVAFSSTVKFDGRRM 71
Query: 326 RDLTVPEVKQIAGRAGRY---GSKFPVGEVTCLD 356
R L E+ QIAGRAGR+ G+ GE + LD
Sbjct: 72 RPLFPHELGQIAGRAGRHTEAGTFGVTGEASPLD 105
>gi|422293533|gb|EKU20833.1| rna helicase like protein, partial [Nannochloropsis gaditana
CCMP526]
Length = 45
Score = 78.2 bits (191), Expect = 9e-12, Method: Composition-based stats.
Identities = 32/41 (78%), Positives = 38/41 (92%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117
R +ILHVGPTNSGKTH+AL R++ ++SGIYCGPLRLLAWEV
Sbjct: 3 RSLILHVGPTNSGKTHEALERMQRAASGIYCGPLRLLAWEV 43
>gi|414870662|tpg|DAA49219.1| TPA: hypothetical protein ZEAMMB73_828601 [Zea mays]
Length = 467
Score = 77.8 bits (190), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/60 (56%), Positives = 47/60 (78%)
Query: 154 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDV 213
+V D + ++M+GCK+RG+ FTRA LG+C++ELH+CGDPA VPLIQ+IL+ TGD V
Sbjct: 63 LVGAVDSRPVGWVKMVGCKSRGYLFTRAHLGLCSDELHVCGDPAVVPLIQRILEDTGDVV 122
>gi|402225812|gb|EJU05873.1| hypothetical protein DACRYDRAFT_104362 [Dacryopinax sp. DJM-731
SS1]
Length = 508
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/100 (40%), Positives = 61/100 (61%), Gaps = 1/100 (1%)
Query: 116 EVAKRLNKANVSCDLITGQEREEV-DGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTR 174
VA++ N +C+L+TG+E+ V + A H A TVEM ++ D V+DEIQ+L R
Sbjct: 409 HVARKWNLLARACNLLTGEEQRWVGERASHLACTVEMTPCGTELDVVVLDEIQLLADPDR 468
Query: 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVK 214
G S+ + LLG A E+H+CG+ AV L+Q+I + G +
Sbjct: 469 GSSWMQVLLGANAQEVHVCGEDTAVGLVQRIAEECGTSSR 508
>gi|218678406|ref|ZP_03526303.1| helicase domain protein [Rhizobium etli CIAT 894]
Length = 208
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 96/204 (47%), Gaps = 14/204 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKR----LNKANVSCDLIT 132
R V +GPTN+GKTH A+ R+ + +G+ PLRLLA EV R + NV+ L+T
Sbjct: 13 RGVTAVLGPTNTGKTHYAIERMVAHGTGVIGLPLRLLAREVYTRVVEKVGAQNVA--LVT 70
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELH 191
G+E+ A+ TVE + IDE+Q+ G RG FT +L + E
Sbjct: 71 GEEKISPPNARFSVCTVEAMPRETKAAFVAIDEVQLAGDLERGHIFTDRILHLRGREETL 130
Query: 192 LCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAI 251
L G P++QQ+L + + RLS L + + IV FS +
Sbjct: 131 LLGAATMQPILQQLL----PGITIVERPRLSHL--FYAGQKKITRLPQRSAIVAFSADEV 184
Query: 252 YRLKKAIESRGKHLCSIVYGSLPP 275
Y + + I R + ++V G+L P
Sbjct: 185 YAIAELIR-RQRGGAAVVLGALSP 207
>gi|255621501|ref|XP_002540213.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
gi|223498139|gb|EEF22170.1| ATP-dependent RNA and DNA helicase, putative [Ricinus communis]
Length = 272
Score = 76.6 bits (187), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 42/98 (42%), Positives = 59/98 (60%), Gaps = 5/98 (5%)
Query: 69 YPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKA---- 124
+ +A K R+ I +GPTNSGKTH+A+ L +++SG+Y PLRLLA E +RL A
Sbjct: 175 FDVASKMRRRFIALLGPTNSGKTHKAMEALANAASGVYLAPLRLLALENYERLVDARPHG 234
Query: 125 -NVSCDLITGQEREEVDGAKHRAVTVEMADVVSDYDCA 161
+ L+TG+ER +GA H TVEM D + + A
Sbjct: 235 KELKVSLVTGEERRLAEGATHVTSTVEMLDTRTAVEMA 272
>gi|156359369|ref|XP_001624742.1| predicted protein [Nematostella vectensis]
gi|156211540|gb|EDO32642.1| predicted protein [Nematostella vectensis]
Length = 64
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 41/57 (71%)
Query: 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWE 116
+DL PH +P ARK RK+I H GPTNSGKTHQ+L +++ S +YC PLRLLA E
Sbjct: 8 SDLRGPHDLFPEARKLRRKIIYHAGPTNSGKTHQSLKSFKTAKSAMYCAPLRLLATE 64
>gi|170094382|ref|XP_001878412.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646866|gb|EDR11111.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 112
Score = 70.5 bits (171), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/50 (66%), Positives = 38/50 (76%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANV 126
RKVI+HVGPTNSGKTH AL L +S G+Y GPLRLLA EV +RLN +
Sbjct: 3 RKVIMHVGPTNSGKTHHALRALAASKRGVYAGPLRLLAHEVWERLNLGQI 52
>gi|170094380|ref|XP_001878411.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164646865|gb|EDR11110.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 56
Score = 65.9 bits (159), Expect = 4e-08, Method: Composition-based stats.
Identities = 29/56 (51%), Positives = 41/56 (73%)
Query: 168 MLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSP 223
M+ RG +T A+LGI A ELHLCG+ AVP++Q +L+ TGD+V ++ YERL+P
Sbjct: 1 MIADPQRGSGWTSAVLGIIAEELHLCGEETAVPVVQALLKDTGDEVVIRRYERLTP 56
>gi|162329297|ref|YP_001604351.1| putative helicase [Acidianus filamentous virus 3]
gi|157310674|emb|CAJ31499.1| putative helicase [Acidianus filamentous virus 3]
Length = 593
Score = 65.9 bits (159), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 82/311 (26%), Positives = 129/311 (41%), Gaps = 53/311 (17%)
Query: 78 KVILHVGPTNSGKTHQA-LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQER 136
K IL PT +GK+ A L E++ +Y PL+ LA ++ K S T
Sbjct: 20 KNILISAPTGTGKSFLAMLMSSEANGRVLYTVPLKALALQLNDDFQKKISSSTPTTALTS 79
Query: 137 EEVD------GAKHRAVTVEMADVV--------SDYDCAVIDEIQMLGCKTRGFSFTRAL 182
E D AK T E AD V ++ + +IDEI +G K RG + L
Sbjct: 80 EVYDEDPENIDAKIIFTTYEKADAVLRRHYGWTNNVNMIIIDEIHNVGDKERGKAIEN-L 138
Query: 183 LGICANE-LHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGD 241
+ NE + L A +P + +I +T +V +Q+ ER P+ + +G + GD
Sbjct: 139 MAYAMNEGIRLIMMSATIPDVDKIADITNAEV-LQTDERPIPIYKA-IKIGKTLIFEDGD 196
Query: 242 -------------------CIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR-- 280
I T +R L + R K + + L P+ + R
Sbjct: 197 KIEMKEDIVTKLVRKGKVVMIFTSTRKKAEELYLIYDKRYKGRVAFFHAGLEPDAKLRLL 256
Query: 281 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK-------KFDGVELRDLTVPEV 333
+ T+ ++++++ + A+G G+N +IF +K +F G R LT E
Sbjct: 257 EETK----QGKYNIIITTTALGQGVNFPFYAVIFDDLKLPIIEYGRFLG--WRSLTPIEF 310
Query: 334 KQIAGRAGRYG 344
QI GRAGR G
Sbjct: 311 DQICGRAGRPG 321
>gi|171473658|ref|YP_001798528.1| putative Holliday junction branch migration helicase [Acidianus
filamentous virus 9]
gi|170779988|gb|ACB37244.1| putative Holliday junction branch migration helicase [Acidianus
filamentous virus 9]
Length = 602
Score = 64.7 bits (156), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/315 (25%), Positives = 135/315 (42%), Gaps = 57/315 (18%)
Query: 78 KVILHVGPTNSGKTHQA-LSRLESSSSGIYCGPLRLLAWE--------VAKRLNKANVSC 128
K +L PT +GK+ A L +E+ + +Y PLR LA + VA +N S
Sbjct: 25 KNLLISAPTGTGKSFLAMLMAMETKARVMYTVPLRALALQLNDDFHNKVAPLVNGYADSI 84
Query: 129 DLITGQEREEVDGAKHRAV--TVEMADVV--SDYDCA------VIDEIQMLGCKTRGFSF 178
L + E+ + R + T E AD V Y A +IDEI +G K RG +
Sbjct: 85 ALTSEVYEEDPENLSERVIFTTYEKADAVFRRHYGWADRIETLIIDEIHNIGDKERGRAI 144
Query: 179 TRALLGICANE-LHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNI 237
L+ NE + L A +P I +I ++T ++ +++ ER PL + +G+
Sbjct: 145 EN-LIAYAMNEGIRLVMMSATIPDINKIAEITDAEI-IKTDERPIPLYKA-IKIGNMLIF 201
Query: 238 QTGD-------------------CIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 278
+ GD I T +R L + R + + L P+T+
Sbjct: 202 EDGDKIELKEDFIKKMVRKNKVVMIFTSTRKKAEELYLIYDKRFPGKVAFFHAGLSPDTK 261
Query: 279 TR--QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK-------KFDGVELRDLT 329
R + TR ++++++++ A+ G+N ++F +K +F G + +T
Sbjct: 262 LRLLEETR----QGKYNIIISTTALSQGVNFPFYAVVFDDLKLPIIDYGRFIG--WKQIT 315
Query: 330 VPEVKQIAGRAGRYG 344
E QI GRAGR G
Sbjct: 316 PIEFDQICGRAGRPG 330
>gi|227495284|ref|ZP_03925600.1| helicase [Actinomyces coleocanis DSM 15436]
gi|226831154|gb|EEH63537.1| helicase [Actinomyces coleocanis DSM 15436]
Length = 881
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 81/321 (25%), Positives = 133/321 (41%), Gaps = 61/321 (19%)
Query: 80 ILHVGPTNSGKTHQALS----RLESSSSGIYCGPLRLLA----WEVAKRLNKANVSCDLI 131
++ PT SGK+ AL+ L Y PL+ L +E+ + NV ++
Sbjct: 56 VIAATPTGSGKSLIALAAHFISLARGGRSFYTAPLKALVSEKFFELVRMFGADNVG--MV 113
Query: 132 TGQEREEVDG------AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI 185
TG D A+ A D D +IDE G + RG+++ LL +
Sbjct: 114 TGDASVNADAPIICCTAEILANQALREGAELDADMIIIDEFHFYGDRERGWAWQVPLLEL 173
Query: 186 CANE-LHLCGDPAAVPLIQQ-ILQVTGDDVK-VQSYERLSPL------VPLN-------- 228
+ + L AV Q+ +L+ TG +V V + +R PL PL
Sbjct: 174 TKPQFVLLSATLGAVDFFQEDLLRRTGREVALVSAAQRPVPLEMSYSVFPLADSVAELIE 233
Query: 229 --------VPLGSFSNIQTGDCIVT---FSRHAIYRLKKAI------ESRGKHLCSIVY- 270
V G + ++T + + T S+ ++K+A + G+ L +++
Sbjct: 234 SGKYPIYIVHFGQKAALETANNLATPTLVSKRHQEKIKEATAGFRFGKGFGQTLRKLLHQ 293
Query: 271 -------GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV 323
G LP R R V+ +D +G+G+N+ I+ ++ +++ KFDGV
Sbjct: 294 GVGIHHAGMLP---RYRLLVEHLTQQGLLAVICGTDTLGVGINVPITTVLITSLVKFDGV 350
Query: 324 ELRDLTVPEVKQIAGRAGRYG 344
R L+ E QIAGRAGR G
Sbjct: 351 RQRTLSAREFHQIAGRAGRAG 371
>gi|162329366|ref|YP_001604167.1| putative helicase [Acidianus filamentous virus 6]
gi|157310743|emb|CAJ31563.1| putative helicase [Acidianus filamentous virus 6]
Length = 593
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 78/311 (25%), Positives = 134/311 (43%), Gaps = 53/311 (17%)
Query: 78 KVILHVGPTNSGKTHQA-LSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDL-- 130
K IL PT +GK+ A L E++ +Y PL+ LA ++ K+++ + L
Sbjct: 20 KNILISAPTGTGKSFLAMLMSSEANGRVLYTVPLKALALQLNDDFQKKISPTTPTTALTS 79
Query: 131 -ITGQEREEVDGAKHRAVTVEMADVV--------SDYDCAVIDEIQMLGCKTRGFSFTRA 181
+ ++ E +D AK T E AD V ++ + +IDEI +G K RG +
Sbjct: 80 EVYDEDPENID-AKIIFTTYEKADAVLRRHYGWTNNVNMIIIDEIHNVGDKERGKAIENL 138
Query: 182 LLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGD 241
+ E+ L A +P + +I VT +V +++ ER P+ + +G + GD
Sbjct: 139 MAYAMNEEIRLIMMSATIPDVDKIADVTNAEV-LKTDERPIPIYKA-IKIGKTLIFEDGD 196
Query: 242 -------------------CIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR-- 280
I T +R L + R + + + L P+ + R
Sbjct: 197 KIEMKEDIVTKLVRKGKVVMIFTSTRKKAEELYLIYDRRYRGRVAFFHAGLEPDAKLRLL 256
Query: 281 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK-------KFDGVELRDLTVPEV 333
+ T+ ++++++ + A+G G+N +IF +K +F G R LT E
Sbjct: 257 EETK----QGKYNIIITTTALGQGVNFPFYAVIFDDLKLPIIEYGRFLG--WRSLTPIEF 310
Query: 334 KQIAGRAGRYG 344
QI GRAGR G
Sbjct: 311 DQICGRAGRPG 321
>gi|162329428|ref|YP_001604228.1| putative helicase [Acidianus filamentous virus 7]
gi|157310326|emb|CAJ31623.1| putative helicase [Acidianus filamentous virus 7]
Length = 593
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 131/312 (41%), Gaps = 55/312 (17%)
Query: 78 KVILHVGPTNSGKTHQA-LSRLESSSSGIYCGPLRLLAWEVAKRLNK-------ANVSCD 129
K IL PT +GK+ A L E++ +Y PL+ LA ++ K
Sbjct: 20 KNILISAPTGTGKSFLAMLLSNEANGRVLYTVPLKALALQLNDDFQKKISTTTPTTALTS 79
Query: 130 LITGQEREEVDGAKHRAVTVEMADVV--------SDYDCAVIDEIQMLGCKTRGFSFTRA 181
+ ++ E +D AK T E AD V ++ +IDEI +G K RG +
Sbjct: 80 EVYDEDPENID-AKIIFTTYEKADAVLRRHYGWTNNVKMIIIDEIHNVGDKERGKAIEN- 137
Query: 182 LLGICANE-LHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTG 240
L+ NE + L A +P I +I VT +V +Q+ ER P+ + +G + G
Sbjct: 138 LMAYAMNEGIRLIMMSATIPDIDKIANVTNAEV-LQTDERPIPIYKA-IKIGKTLFFEDG 195
Query: 241 D-------------------CIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR- 280
D I T +R L + R + + + L P+ + R
Sbjct: 196 DKIEMKDDLVTKLTKKGKVVMIFTSTRKKAEELYLIYDKRYRERVAFFHAGLEPDAKLRL 255
Query: 281 -QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK-------KFDGVELRDLTVPE 332
+ T+ + ++++++ + A+G G+N +IF +K +F G R LT E
Sbjct: 256 LEETK----AGKYNIIITTTALGQGVNFPFYAVIFDDLKLPIIEYGRFIG--WRSLTPIE 309
Query: 333 VKQIAGRAGRYG 344
QI GRAGR G
Sbjct: 310 FDQICGRAGRPG 321
>gi|162329488|ref|YP_001604287.1| putative helicase [Acidianus filamentous virus 8]
gi|157310605|emb|CAJ31683.1| putative helicase [Acidianus filamentous virus 8]
Length = 593
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 77/311 (24%), Positives = 133/311 (42%), Gaps = 53/311 (17%)
Query: 78 KVILHVGPTNSGKTHQA-LSRLESSSSGIYCGPLRLLAWEV----AKRLNKANVSCDL-- 130
K IL PT +GK+ A L E+ +Y PL+ LA ++ K+++ + L
Sbjct: 20 KNILISAPTGTGKSFLAMLLSNETKGRVLYTVPLKALALQLNDDFQKKVSPTTPTTALTS 79
Query: 131 -ITGQEREEVDGAKHRAVTVEMADVV--------SDYDCAVIDEIQMLGCKTRGFSFTRA 181
+ ++ E +D AK T E AD V ++ + +IDEI +G K RG +
Sbjct: 80 EVYDEDPENID-AKVIFTTYEKADAVLRRHYGWANNVEMIIIDEIHNVGDKERGKAIENL 138
Query: 182 LLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGD 241
+ E+ L A +P I +I +T ++ V++ ER P+ + +G + GD
Sbjct: 139 MAYAMNEEIRLVMMSATIPDIDKIADITNAEI-VKTNERPIPIYKA-IKIGKTLFFEDGD 196
Query: 242 -------------------CIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR-- 280
I T +R L + + + + + L P+ + R
Sbjct: 197 KIEMKEDLVTKLTKKGKVVMIFTSTRKKAEELYLIYDKKYRGRVAFFHAGLEPDAKLRLL 256
Query: 281 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK-------KFDGVELRDLTVPEV 333
+ T+ ++++++ + A+G G+N +IF +K +F G R LT E
Sbjct: 257 EETK----QGKYNIIITTTALGQGVNFPFYAVIFDDLKLPIIEYGRFLG--WRSLTPIEF 310
Query: 334 KQIAGRAGRYG 344
QI GRAGR G
Sbjct: 311 DQICGRAGRPG 321
>gi|167648081|ref|YP_001685744.1| hypothetical protein Caul_4122 [Caulobacter sp. K31]
gi|167350511|gb|ABZ73246.1| hypothetical protein Caul_4122 [Caulobacter sp. K31]
Length = 172
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 58/108 (53%), Gaps = 2/108 (1%)
Query: 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK--ANVSCDLITGQE 135
K+ +GPTN+GKTH A+ R+ +S + PLRLLA E+ R+ K S LITG+E
Sbjct: 12 KLTAVLGPTNTGKTHLAVERMLGHASVMIGLPLRLLAREIYDRIVKLRGKASVALITGEE 71
Query: 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALL 183
+ A + TVE + + + IDEIQ+ RG FT LL
Sbjct: 72 KIVPPRAAYFVCTVEAMPLTREVEFLAIDEIQLCADPERGHIFTHRLL 119
>gi|222875003|gb|EEF12134.1| predicted protein [Populus trichocarpa]
Length = 240
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/93 (41%), Positives = 54/93 (58%), Gaps = 6/93 (6%)
Query: 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWE----VAKRLNKANVSCDLIT 132
R + +GPTN+GKTH A+ R+ + SG+ PLRLLA E VA R+ + NV+ LIT
Sbjct: 150 RGITAVLGPTNTGKTHLAIERMVAHESGLIGLPLRLLAREVYHRVASRVGEQNVA--LIT 207
Query: 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDE 165
G+E+ GA++ TVE +D IDE
Sbjct: 208 GEEKIIPPGARYSVCTVEAMPRSTDAAFVAIDE 240
>gi|383456753|ref|YP_005370742.1| DEAD/DEAH box helicase [Corallococcus coralloides DSM 2259]
gi|380733025|gb|AFE09027.1| DEAD/DEAH box helicase [Corallococcus coralloides DSM 2259]
Length = 853
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 77/323 (23%), Positives = 136/323 (42%), Gaps = 76/323 (23%)
Query: 85 PTNSGKTHQALS-RLESSSSG---IYCGPLRLLAWEVAKRLNKA----NVSCDLITGQER 136
PT SGK+ A++ ++ + G Y P++ L E L+KA NV ++TG
Sbjct: 65 PTGSGKSLVAMALHFKAMAEGKVSFYTCPIKALVNEKFFALSKAFGPENVG--MLTG--- 119
Query: 137 EEVDGAKHRAVTV-----------EMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI 185
D + +R + + D + D V+DE K RG ++ LL +
Sbjct: 120 ---DASINREAPILCCTAEILSNLALRDASARVDAVVMDEFHYYSDKERGVAWQIPLLAL 176
Query: 186 CANELHLC----GDPAAVPLIQQILQVTGDDV-KVQSYERLSPLVPLNVPLGSFSNIQTG 240
+ L GD + Q + ++TG +V V+S ER VPL+ +T
Sbjct: 177 PKTQFLLMSATLGDTHVIE--QSLEKLTGREVATVRSSERP---VPLDFDYREVPLHETI 231
Query: 241 DCIVTFSRHAIYRL---KKAIESRGKHLCSIVYGSLPPETRTRQA-------TRFNDASS 290
++ ++ +Y + ++A + ++L S+ + + + RQA T +
Sbjct: 232 QDLIARGKYPVYLVNFTQRAAAEQAQNLMSVDFNTKEEKEEIRQALLDAPFDTPYGKDFQ 291
Query: 291 EF-----------------------------DVLVASDAIGMGLNLNISRIIFSTMKKFD 321
F V+ +D +G+G+N+ I ++F+ + KF+
Sbjct: 292 RFLRHGIGMHHAGLLPKYRLLVEKLAQQGLLKVISGTDTLGVGVNIPIRTVLFTQLFKFN 351
Query: 322 GVELRDLTVPEVKQIAGRAGRYG 344
G +L L+V + KQIAGRAGR G
Sbjct: 352 GEKLATLSVRDFKQIAGRAGRKG 374
>gi|356569566|ref|XP_003552970.1| PREDICTED: helicase SKI2W-like [Glycine max]
Length = 1342
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 52/95 (54%), Gaps = 3/95 (3%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
VL +++ MG+N ++F T++KFDG E R L E Q+AGRAGR G +G V
Sbjct: 733 VLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQLLAGEYTQMAGRAGRRGLD-KIGTVI 791
Query: 354 CLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYM 388
+ ++LP +S LEP + + L F L Y+
Sbjct: 792 LMCRDELP--EESDLEPVIVGSATRLESQFRLTYI 824
>gi|156084552|ref|XP_001609759.1| helicase with zinc finger motif protein [Babesia bovis T2Bo]
gi|154797011|gb|EDO06191.1| helicase with zinc finger motif protein, putative [Babesia bovis]
Length = 1113
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/120 (35%), Positives = 62/120 (51%), Gaps = 3/120 (2%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG-SKFPVGEV 352
VL A++ MG+N+ +IF+++ K DG + R LT E Q+AGRAGR G F +
Sbjct: 544 VLFATETFAMGVNMPARSVIFTSIHKHDGQKTRHLTASEYTQMAGRAGRRGLDSFGSVYI 603
Query: 353 TCLDS-EDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKL 411
C D DL L + E S LES L+ ++SR H + + +L+ F E K+
Sbjct: 604 FCPDDPPDLQDLTTMMFEKSTKLESKFRITYNMLLQVHSREHMNITEM-MLKSFKETYKM 662
>gi|403214546|emb|CCK69047.1| hypothetical protein KNAG_0B06170 [Kazachstania naganishii CBS
8797]
Length = 1283
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 233 SFSNIQTGDCIVTFSRHAIYRLKK---------AIESRGKHLCSIVYGSLPPETRTRQAT 283
+F N + I F +I RL+K I S + ++ +G L P +
Sbjct: 645 NFCNNKEKSQIYMFIEKSITRLRKEDRELPQILKIRSLLERGIAVHHGGLLPIVKELIEI 704
Query: 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
F A VL A++ MGLNL ++FS ++K DG LRDLT E Q+AGRAGR
Sbjct: 705 LF--AKGFIKVLFATETFAMGLNLPTRTVVFSEIRKHDGNGLRDLTPGEFTQMAGRAGRR 762
Query: 344 G 344
G
Sbjct: 763 G 763
>gi|410075151|ref|XP_003955158.1| hypothetical protein KAFR_0A05880 [Kazachstania africana CBS 2517]
gi|372461740|emb|CCF56023.1| hypothetical protein KAFR_0A05880 [Kazachstania africana CBS 2517]
Length = 1276
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 11/140 (7%)
Query: 233 SFSNIQTGDCIVTFSRHAIYRLKK---------AIESRGKHLCSIVYGSLPPETRTRQAT 283
+F N + I F ++I RLKK ++S + ++ +G L P +
Sbjct: 638 NFCNNKERSQIHMFIENSITRLKKEDRELPQVLKVKSLLERGIAVHHGGLLPIVKELIEI 697
Query: 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
F+ VL A++ MGLNL ++FS ++K DG +RDLT E Q+AGRAGR
Sbjct: 698 LFSKGF--IKVLFATETFAMGLNLPTRTVVFSEIRKHDGNGVRDLTPGEFTQMAGRAGRR 755
Query: 344 GSKFPVGEVTCLDSEDLPLL 363
G + +E LPLL
Sbjct: 756 GLDKTGTVIVMAYNEPLPLL 775
>gi|363750700|ref|XP_003645567.1| hypothetical protein Ecym_3257 [Eremothecium cymbalariae
DBVPG#7215]
gi|356889201|gb|AET38750.1| Hypothetical protein Ecym_3257 [Eremothecium cymbalariae
DBVPG#7215]
Length = 1274
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 61/131 (46%), Gaps = 12/131 (9%)
Query: 234 FSNIQTGDCIVTFSRHAIYRLKK---------AIESRGKHLCSIVYGSLPPETRTRQATR 284
FS + + F +I RLKK I S + +I +G L P +
Sbjct: 638 FSTAKEKSQVYMFIEKSISRLKKEDRDLPQIMKIRSLLERGIAIHHGGLLPIVKELIEML 697
Query: 285 FNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
F A VL A++ MGLNL ++FS ++K DG LR L E Q+AGRAGR G
Sbjct: 698 F--AKGFVKVLFATETFAMGLNLPTRTVVFSEIEKHDGNSLRTLNPGEFTQMAGRAGRRG 755
Query: 345 SKFPVGEVTCL 355
K P+G V +
Sbjct: 756 -KDPIGTVIIM 765
>gi|156847381|ref|XP_001646575.1| hypothetical protein Kpol_1055p74 [Vanderwaltozyma polyspora DSM
70294]
gi|156117253|gb|EDO18717.1| hypothetical protein Kpol_1055p74 [Vanderwaltozyma polyspora DSM
70294]
Length = 1274
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/121 (35%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 233 SFSNIQTGDCIVTFSRHAIYRLKK---------AIESRGKHLCSIVYGSLPPETRTRQAT 283
+F N + I F +I RLKK I S + ++ +G L P +
Sbjct: 636 NFCNNREKSQIHMFIEKSITRLKKEDRELPQILKIRSLLERGIAVHHGGLLPIVKELIEI 695
Query: 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
F + VL A++ MGLNL +IFS ++K DGV LRDL E Q+AGRAGR
Sbjct: 696 LF--SKGLIRVLFATETFAMGLNLPTRTVIFSEIQKHDGVGLRDLNPGEFTQMAGRAGRR 753
Query: 344 G 344
G
Sbjct: 754 G 754
>gi|365991078|ref|XP_003672368.1| hypothetical protein NDAI_0J02330 [Naumovozyma dairenensis CBS 421]
gi|343771143|emb|CCD27125.1| hypothetical protein NDAI_0J02330 [Naumovozyma dairenensis CBS 421]
Length = 1310
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 233 SFSNIQTGDCIVTFSRHAIYRLKK---------AIESRGKHLCSIVYGSLPPETRTRQAT 283
+F N + + F ++I RLKK I + + ++ +G L P +
Sbjct: 672 NFCNAKEKSQVHMFIENSITRLKKEDRELPQIMKIRNLLERGIAVHHGGLLPIVKELIEI 731
Query: 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
F+ VL A++ MGLNL ++FS ++K DG LRDLT E Q+AGRAGR
Sbjct: 732 LFSKGF--IKVLFATETFAMGLNLPTRTVVFSEIRKHDGTGLRDLTPGEFTQMAGRAGRR 789
Query: 344 G 344
G
Sbjct: 790 G 790
>gi|366997422|ref|XP_003678473.1| hypothetical protein NCAS_0J01560 [Naumovozyma castellii CBS 4309]
gi|342304345|emb|CCC72135.1| hypothetical protein NCAS_0J01560 [Naumovozyma castellii CBS 4309]
Length = 1298
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 233 SFSNIQTGDCIVTFSRHAIYRLKK---------AIESRGKHLCSIVYGSLPPETRTRQAT 283
+F N + I F ++I RLKK I + + ++ +G L P +
Sbjct: 660 NFCNAKEKSQIHMFIENSITRLKKEDRELPQIMKIRNLLERGIAVHHGGLLPIVKELIEI 719
Query: 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
F+ VL A++ MGLNL ++FS ++K DG LRDLT E Q+AGRAGR
Sbjct: 720 LFSKGF--IKVLFATETFAMGLNLPTRTVVFSEIQKHDGSGLRDLTPGEFTQMAGRAGRR 777
Query: 344 G 344
G
Sbjct: 778 G 778
>gi|392570858|gb|EIW64030.1| antiviral helicase [Trametes versicolor FP-101664 SS1]
Length = 1254
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 4/78 (5%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
VL A++ MG+N+ ++FS ++K DG RD+ E Q+AGRAGR G P G V
Sbjct: 674 VLFATETFAMGVNMPAKCVVFSHIRKHDGRSFRDIMPGEYTQMAGRAGRRGLD-PTGTVI 732
Query: 354 CLDSEDLP---LLHKSLL 368
+ ++DLP +LH +L
Sbjct: 733 IVANDDLPEQSILHNMIL 750
>gi|16753094|ref|NP_445672.1| putative helicase [Sulfolobus islandicus filamentous virus]
gi|82061389|sp|Q914M3.1|Y007_SIFVH RecName: Full=Putative helicase 7
gi|16751764|gb|AAL27718.1| putative helicase [Sulfolobus islandicus filamentous virus]
Length = 601
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 77/315 (24%), Positives = 133/315 (42%), Gaps = 57/315 (18%)
Query: 78 KVILHVGPTNSGKTHQA-LSRLESSSSGIYCGPLRLLAWE--------VAKRLNKANVSC 128
K +L PT +GK+ A L +E+ S +Y PLR LA + VA +N S
Sbjct: 24 KNLLITAPTGTGKSFLAMLMAMETKSRVVYTVPLRALALQLNDDFHNKVAPLVNGYADSV 83
Query: 129 DLITGQEREEVDGAKHRAV--TVEMADVV--------SDYDCAVIDEIQMLGCKTRGFSF 178
L + E+ + + R + T E AD + + +IDEI +G K RG +
Sbjct: 84 ALTSEVYEEDPENLEERVIFTTYEKADAIFRRHYPWTDRIETLIIDEIHNIGDKERGKAI 143
Query: 179 TRALLGICANE-LHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNI 237
L+ NE + + A +P + +I ++ +++ ER PL V +G+
Sbjct: 144 EN-LIAYAMNEGIRIVAMSATIPDVNKIAEIIDA-EIIKTDERPIPLYKA-VKIGNKLYF 200
Query: 238 QTGDCI-------------------VTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR 278
+ GD I T +R L + + ++ + + L ET+
Sbjct: 201 EDGDVIELKEDFIKKMVRKNKVVMIFTSTRKKAEELYMIYDRKFQNKVAFFHAGLDAETK 260
Query: 279 TR--QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMK-------KFDGVELRDLT 329
R + TR +++++V++ A+ G+N ++F +K +F G + +T
Sbjct: 261 LRLLEETR----QGKYNIIVSTTALSQGVNFPFYAVVFDDLKLPIIEYGRFTG--WKQIT 314
Query: 330 VPEVKQIAGRAGRYG 344
E QI GRAGR G
Sbjct: 315 PIEFDQICGRAGRPG 329
>gi|332671188|ref|YP_004454196.1| DEAD/DEAH box helicase domain-containing protein [Cellulomonas fimi
ATCC 484]
gi|332340226|gb|AEE46809.1| DEAD/DEAH box helicase domain protein [Cellulomonas fimi ATCC 484]
Length = 853
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 8/89 (8%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
V+ +D +G+G+N+ I ++ +++ K+DGV +R L+ E QIAGRAGR G VGEV
Sbjct: 320 VVCGTDTLGVGINVPIRTVLLTSLVKYDGVRMRHLSAREFHQIAGRAGRAGFDT-VGEVI 378
Query: 354 CLDSEDLPLLHKSLLEPSPMLESAGLFPN 382
L E ++E LE AG P
Sbjct: 379 VLAPE-------HVIENRRALEKAGDDPR 400
>gi|401624563|gb|EJS42619.1| ski2p [Saccharomyces arboricola H-6]
Length = 1285
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 233 SFSNIQTGDCIVTFSRHAIYRLKK---------AIESRGKHLCSIVYGSLPPETRTRQAT 283
+F N + I F +I RLKK I S + ++ +G L P +
Sbjct: 649 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKIRSLLERGIAVHHGGLLPIVKELIEI 708
Query: 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
F+ VL A++ MGLNL +IFS+++K DG LR+LT E Q+AGRAGR
Sbjct: 709 LFSKGF--IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 766
Query: 344 G 344
G
Sbjct: 767 G 767
>gi|67623323|ref|XP_667944.1| ATP-dependent RNA helicase; ATP-dependent RNA helicase
[Cryptosporidium hominis TU502]
gi|54659130|gb|EAL37723.1| ATP-dependent RNA helicase; ATP-dependent RNA helicase
[Cryptosporidium hominis]
Length = 1280
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 2/138 (1%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
VL +++ MG+N+ +IF++++KFDG E R + E Q++GRAGR G +T
Sbjct: 442 VLFSTETFSMGINMPAKTVIFTSLRKFDGKEYRIVNSGEFIQMSGRAGRRGLDDRGITIT 501
Query: 354 CLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSE 413
+D P KS+L P+ + + ++++ RL Y I F + K +
Sbjct: 502 MIDELADPWAIKSMLTGQPLRIDSQFYIGYNMLLNLLRLEGADPEYMINRSFSQFLKRKK 561
Query: 414 NYFFANCEEVLKVATVID 431
EE+ ++ +++D
Sbjct: 562 TVSLH--EEINRIQSILD 577
>gi|387593908|gb|EIJ88932.1| ATP-dependent DEAD/H RNA helicase [Nematocida parisii ERTm3]
gi|387595891|gb|EIJ93514.1| ATP-dependent DEAD/H RNA helicase [Nematocida parisii ERTm1]
Length = 976
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/88 (39%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
VL A++ +GLN+ +IF+++KKFDGV+ R +T E Q++GRAGR G+ +G V
Sbjct: 421 VLFATETFSIGLNMPAKSVIFTSIKKFDGVQTRFITSGEYIQMSGRAGRRGTD-KIGNVI 479
Query: 354 CLDSEDLPL----LHKSLLEPSPMLESA 377
L L + K L PS L+SA
Sbjct: 480 LALESTLTLSEKEIKKVLHGPSNTLDSA 507
>gi|66359948|ref|XP_627152.1| Mtr4p like SKI family SFII helicase [Cryptosporidium parvum Iowa
II]
gi|46228571|gb|EAK89441.1| Mtr4p like SKI family SFII helicase [Cryptosporidium parvum Iowa
II]
Length = 1280
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 68/138 (49%), Gaps = 2/138 (1%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
VL +++ MG+N+ +IF++++KFDG E R + E Q++GRAGR G +T
Sbjct: 442 VLFSTETFSMGINMPAKTVIFTSLRKFDGKEYRIVNSGEFIQMSGRAGRRGLDDRGITIT 501
Query: 354 CLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSE 413
+D P KS+L P+ + + ++++ RL Y I F + K +
Sbjct: 502 MIDELADPWAIKSMLTGQPLRIDSQFYIGYNMLLNLLRLEGADPEYMINRSFSQFLKRKK 561
Query: 414 NYFFANCEEVLKVATVID 431
EE+ ++ +++D
Sbjct: 562 TVSLH--EEINRIQSILD 577
>gi|378756169|gb|EHY66194.1| ATP-dependent DEAD/H RNA helicase [Nematocida sp. 1 ERTm2]
Length = 970
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
VL A++ +GLN+ +IF+++KKFDGV+ R +T E Q++GRAGR G+ +G V
Sbjct: 419 VLFATETFSIGLNMPAKSVIFTSIKKFDGVQTRFITSGEYIQMSGRAGRRGTD-RIGNVI 477
Query: 354 CLDSEDLPLLHKSLLE----PSPMLESA 377
+ L K + + PS L+SA
Sbjct: 478 LALESTMTLTEKEIRKVLHGPSNTLDSA 505
>gi|261337912|ref|ZP_05965796.1| DEAD/DEAH box helicase [Bifidobacterium gallicum DSM 20093]
gi|270277392|gb|EFA23246.1| DEAD/DEAH box helicase [Bifidobacterium gallicum DSM 20093]
Length = 864
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 83/324 (25%), Positives = 131/324 (40%), Gaps = 66/324 (20%)
Query: 79 VILHVGPTNSGKTHQAL----SRLESSSSGIYCGPLRLLA----WEVAKRLNKANVSCDL 130
V+L+ PT SGK+ AL + L ++ + Y P++ L +++ + + NV L
Sbjct: 74 VVLNT-PTGSGKSLVALGMCFAALCTARTAYYTAPIKALVSEKFFDLVEVFGRENVG--L 130
Query: 131 ITGQEREEVDG------AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLG 184
ITG D A+ A +D C +DE G RG+++ LL
Sbjct: 131 ITGDSHINADAPIICCTAEILANQALREGKRADVGCVAMDEFHYYGDPERGWAWQVPLLT 190
Query: 185 ICANELHLCGDPAAVPLIQQIL----QVTGDDVKVQSYE-RLSPLV------PLNVPLGS 233
+ + L A + + QI Q+T DV + S R PL PL + S
Sbjct: 191 LPDTQFLLMS--ATLGNVDQIADKLEQMTDRDVDIISNAPRPVPLTFEYTTEPLEKTIQS 248
Query: 234 -FSNIQTGDCIVTFSRHAIYRLKKAI--------ESR----------------GKHLCSI 268
+ +T +V FS+ A +++ E R GK L +
Sbjct: 249 ALAEQETPIYVVHFSQDAALDTAQSLANAGVSTKEQREAIAEAIKGFKFTTAFGKILHRL 308
Query: 269 V--------YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKF 320
+ G LP R R+ V+ +D +G+G+N+ I ++ + + KF
Sbjct: 309 LRTGVGIHHAGMLP---RYRRLVETLAQQGLLPVICGTDTLGVGINVPIHSVVLTALTKF 365
Query: 321 DGVELRDLTVPEVKQIAGRAGRYG 344
DG +R L E QIAGRAGR G
Sbjct: 366 DGSRMRKLRAREFHQIAGRAGRMG 389
>gi|308233582|ref|ZP_07664319.1| DEAD box-like helicase [Atopobium vaginae DSM 15829]
gi|328944492|ref|ZP_08241953.1| DEAD box family helicase [Atopobium vaginae DSM 15829]
gi|327490893|gb|EGF22671.1| DEAD box family helicase [Atopobium vaginae DSM 15829]
Length = 947
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
V+ +D +G+G+N+ I +IF+++ KFDG +R L E QIAGRAGR G
Sbjct: 356 VICGTDTLGVGINVPIHTVIFNSLTKFDGRHMRHLNAREFHQIAGRAGRCG 406
>gi|257791205|ref|YP_003181811.1| DEAD/DEAH box helicase [Eggerthella lenta DSM 2243]
gi|257475102|gb|ACV55422.1| DEAD/DEAH box helicase domain protein [Eggerthella lenta DSM 2243]
Length = 869
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 85/357 (23%), Positives = 134/357 (37%), Gaps = 88/357 (24%)
Query: 85 PTNSGKTHQALS----RLESSSSGIYCGPLRLLAWE----VAKRLNKANVSCDLITGQER 136
PT SGK+ AL L + Y P++ L E + + L + NV +ITG
Sbjct: 85 PTGSGKSLVALGMQFMALATGKRSYYTAPIKALVSEKFFNLVEVLGRENVG--MITGDAH 142
Query: 137 EEVDG------AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANEL 190
+ A+ A +D C +DE G RG+++ LL + +
Sbjct: 143 INAEAPVICCTAEILANQALREGEAADVGCVAMDEFHFYGDADRGWAWQVPLLTLPKTQF 202
Query: 191 HLC----GDPAAVPLIQQILQVTGDDVKVQ---------SYERLSPLVPLNVPLGSFSNI 237
L GD +A+ + + TG DV V SYE + + V L +
Sbjct: 203 LLMSATLGDVSAIA--ASLKERTGTDVDVVADAPRPVPLSYEYVEMPLEGTVELA----L 256
Query: 238 QTGDC---IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETR-----TRQATRFNDAS 289
+ G+ +V FS+ A +A+ S YG E R + TRF A
Sbjct: 257 RKGEAPLYLVHFSQDAALATAQALSS---------YGVASKEQRELVKDAVKGTRFTTAF 307
Query: 290 SE---------------------------------FDVLVASDAIGMGLNLNISRIIFST 316
+ V+ +D +G+G+N+ I ++ +
Sbjct: 308 GKTLKRLLASGVGVHHAGMLPRYRLLVEKLAQQGLLPVICGTDTLGVGINVPIHTVVLTQ 367
Query: 317 MKKFDGVELRDLTVPEVKQIAGRAGRYG---SKFPVGEVTCLDSEDLPLLHKSLLEP 370
+ KFDG ++R L E QI GRAGR G + E D E+ L+ K+ +P
Sbjct: 368 LTKFDGYKMRRLRAREFHQIVGRAGRSGFDTEGMVIAEAPEHDIENAKLMAKAGDDP 424
>gi|86740957|ref|YP_481357.1| DEAD/DEAH box helicase [Frankia sp. CcI3]
gi|86567819|gb|ABD11628.1| DEAD/DEAH box helicase-like [Frankia sp. CcI3]
Length = 885
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
V+ +D +G+G+N+ I ++F+++ K+DG +R L+ E QIAGRAGR G PVG V
Sbjct: 351 VICGTDTLGVGINVPIRTVVFTSLSKYDGSRVRLLSAREFHQIAGRAGRAGYD-PVGNVV 409
Query: 354 C 354
Sbjct: 410 V 410
>gi|296270080|ref|YP_003652712.1| DEAD/DEAH box helicase [Thermobispora bispora DSM 43833]
gi|296092867|gb|ADG88819.1| DEAD/DEAH box helicase domain protein [Thermobispora bispora DSM
43833]
Length = 832
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 3/102 (2%)
Query: 253 RLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRI 312
R + + +H + + + P+ R R R A V+ +D +G+G+N+ I +
Sbjct: 278 RFGRTLSRLVRHGIGVHHAGMLPKYR-RLVERLAQAGL-LKVICGTDTLGVGVNIPIRTV 335
Query: 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 354
+F+ + KFDG +R L E QIAGRAGR G VG V C
Sbjct: 336 LFTALSKFDGSRVRRLRAREFHQIAGRAGRAGFD-TVGYVVC 376
>gi|364506256|pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2
Bound To Amppnp
Length = 997
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 60/124 (48%), Gaps = 17/124 (13%)
Query: 233 SFSNIQTGDCIVTFSRHAIYRLKK------------AIESRGKHLCSIVYGSLPPETRTR 280
+F N + I F +I RLKK ++ RG ++ +G L P +
Sbjct: 360 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERG---IAVHHGGLLPIVKEL 416
Query: 281 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 340
F+ VL A++ MGLNL +IFS+++K DG LR+LT E Q+AGRA
Sbjct: 417 IEILFSKGF--IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRA 474
Query: 341 GRYG 344
GR G
Sbjct: 475 GRRG 478
>gi|151940919|gb|EDN59301.1| superkiller [Saccharomyces cerevisiae YJM789]
Length = 1287
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 233 SFSNIQTGDCIVTFSRHAIYRLKKA-------IESRG--KHLCSIVYGSLPPETRTRQAT 283
+F N + I F +I RLKK +++R + ++ +G L P +
Sbjct: 650 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEI 709
Query: 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
F+ VL A++ MGLNL +IFS+++K DG LR+LT E Q+AGRAGR
Sbjct: 710 LFSKGF--IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 767
Query: 344 G 344
G
Sbjct: 768 G 768
>gi|259148376|emb|CAY81623.1| Ski2p [Saccharomyces cerevisiae EC1118]
gi|365764188|gb|EHN05713.1| Ski2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 1287
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 233 SFSNIQTGDCIVTFSRHAIYRLKKA-------IESRG--KHLCSIVYGSLPPETRTRQAT 283
+F N + I F +I RLKK +++R + ++ +G L P +
Sbjct: 650 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEI 709
Query: 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
F+ VL A++ MGLNL +IFS+++K DG LR+LT E Q+AGRAGR
Sbjct: 710 LFSKGF--IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 767
Query: 344 G 344
G
Sbjct: 768 G 768
>gi|271967476|ref|YP_003341672.1| ATP-dependent helicase [Streptosporangium roseum DSM 43021]
gi|270510651|gb|ACZ88929.1| putative ATP-dependent helicase [Streptosporangium roseum DSM
43021]
Length = 830
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 54/102 (52%), Gaps = 3/102 (2%)
Query: 253 RLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRI 312
R +A+ +H + + + P+ R R R A V+ +D +G+G+N+ I +
Sbjct: 276 RFGRALSRLVRHGIGVHHAGMLPKYR-RLVERLAQAGL-LKVICGTDTLGVGVNVPIRTV 333
Query: 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 354
+F+ + K+DG ++R L E QIAGRAGR G +G V C
Sbjct: 334 LFTALSKYDGNKVRRLRAREFHQIAGRAGRAGFD-TIGYVVC 374
>gi|323303729|gb|EGA57515.1| Ski2p [Saccharomyces cerevisiae FostersB]
Length = 1287
Score = 55.8 bits (133), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 233 SFSNIQTGDCIVTFSRHAIYRLKKA-------IESRG--KHLCSIVYGSLPPETRTRQAT 283
+F N + I F +I RLKK +++R + ++ +G L P +
Sbjct: 650 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEI 709
Query: 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
F+ VL A++ MGLNL +IFS+++K DG LR+LT E Q+AGRAGR
Sbjct: 710 LFSKGF--IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 767
Query: 344 G 344
G
Sbjct: 768 G 768
>gi|349580095|dbj|GAA25256.1| K7_Ski2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 1287
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 233 SFSNIQTGDCIVTFSRHAIYRLKKA-------IESRG--KHLCSIVYGSLPPETRTRQAT 283
+F N + I F +I RLKK +++R + ++ +G L P +
Sbjct: 650 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEI 709
Query: 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
F+ VL A++ MGLNL +IFS+++K DG LR+LT E Q+AGRAGR
Sbjct: 710 LFSKGF--IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 767
Query: 344 G 344
G
Sbjct: 768 G 768
>gi|256269132|gb|EEU04467.1| Ski2p [Saccharomyces cerevisiae JAY291]
Length = 1287
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 233 SFSNIQTGDCIVTFSRHAIYRLKKA-------IESRG--KHLCSIVYGSLPPETRTRQAT 283
+F N + I F +I RLKK +++R + ++ +G L P +
Sbjct: 650 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEI 709
Query: 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
F+ VL A++ MGLNL +IFS+++K DG LR+LT E Q+AGRAGR
Sbjct: 710 LFSKGF--IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 767
Query: 344 G 344
G
Sbjct: 768 G 768
>gi|190405440|gb|EDV08707.1| antiviral helicase SKI2 [Saccharomyces cerevisiae RM11-1a]
gi|323353725|gb|EGA85581.1| Ski2p [Saccharomyces cerevisiae VL3]
Length = 1287
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 233 SFSNIQTGDCIVTFSRHAIYRLKKA-------IESRG--KHLCSIVYGSLPPETRTRQAT 283
+F N + I F +I RLKK +++R + ++ +G L P +
Sbjct: 650 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEI 709
Query: 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
F+ VL A++ MGLNL +IFS+++K DG LR+LT E Q+AGRAGR
Sbjct: 710 LFSKGF--IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 767
Query: 344 G 344
G
Sbjct: 768 G 768
>gi|50285719|ref|XP_445288.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524592|emb|CAG58194.1| unnamed protein product [Candida glabrata]
Length = 1283
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/51 (52%), Positives = 34/51 (66%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
VL A++ MGLNL ++FS ++K DG LRDLT E Q+AGRAGR G
Sbjct: 712 VLFATETFAMGLNLPTRTVVFSEIQKHDGNGLRDLTPGEFTQMAGRAGRRG 762
>gi|398366119|ref|NP_013502.3| Ski2p [Saccharomyces cerevisiae S288c]
gi|8489004|sp|P35207.2|SKI2_YEAST RecName: Full=Antiviral helicase SKI2; AltName: Full=Superkiller
protein 2
gi|625114|gb|AAB82356.1| Ski2p: Antiviral protein [Saccharomyces cerevisiae]
gi|285813803|tpg|DAA09699.1| TPA: Ski2p [Saccharomyces cerevisiae S288c]
gi|392297900|gb|EIW08999.1| Ski2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 1287
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 233 SFSNIQTGDCIVTFSRHAIYRLKKA-------IESRG--KHLCSIVYGSLPPETRTRQAT 283
+F N + I F +I RLKK +++R + ++ +G L P +
Sbjct: 650 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEI 709
Query: 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
F+ VL A++ MGLNL +IFS+++K DG LR+LT E Q+AGRAGR
Sbjct: 710 LFSKGF--IKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 767
Query: 344 G 344
G
Sbjct: 768 G 768
>gi|300707105|ref|XP_002995775.1| hypothetical protein NCER_101250 [Nosema ceranae BRL01]
gi|239604987|gb|EEQ82104.1| hypothetical protein NCER_101250 [Nosema ceranae BRL01]
Length = 928
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 36/51 (70%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
VL A++ +GLN+ +IF+++KKFDGV+ R LT E Q++GRAGR G
Sbjct: 384 VLFATETFSIGLNMPAKSVIFTSLKKFDGVKTRHLTSAEYIQMSGRAGRRG 434
>gi|429961689|gb|ELA41234.1| hypothetical protein VICG_01723 [Vittaforma corneae ATCC 50505]
Length = 900
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
VL A++ +GLN+ +IF++++KFDG R LT E Q++GRAGR G +G
Sbjct: 383 VLFATETFSIGLNMPAKTVIFTSLRKFDGTNRRLLTSGEFIQMSGRAGRRGLD-EMGAAI 441
Query: 354 CLDSEDLPLLH-KSLLEPSPMLESAGLFPNFDLIY 387
C+ +E+L + K++ S + LF F L Y
Sbjct: 442 CILTEELTVAQVKTIFSSS----ADKLFSAFRLTY 472
>gi|443896240|dbj|GAC73584.1| cytoplasmic exosomal RNA helicase SKI2 [Pseudozyma antarctica T-34]
Length = 1284
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 89/196 (45%), Gaps = 17/196 (8%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
VL A++ MG+N+ ++FS+++K DG R+L E Q++GRAGR G P G V
Sbjct: 716 VLFATETFAMGVNMPARSVVFSSIRKHDGHGFRELLPGEYTQMSGRAGRRGLD-PTGVVI 774
Query: 354 CLDSEDLP---LLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAK 410
++ LP +LHK LL L+S +++I R+ I F ENA
Sbjct: 775 INAADQLPETAVLHKMLLGQPTKLQSQFRL-TYNMILNLLRVEALKVEEMIKRSFSENA- 832
Query: 411 LSENYFFANCEEVLKVATVIDQLP--------LRLHEKYLFCISPVDMNDDIS--SQGLT 460
++ + ++ + +LP +L Y C + V N + + G
Sbjct: 833 -AQKMLPDQQRKAQELERQLSRLPHPQPEELDAQLATYYDLCAAVVASNQSLFELALGHQ 891
Query: 461 QFATNYSKKGIVQLRE 476
Q A N++ +V LR+
Sbjct: 892 QGAKNFAAGRVVVLRD 907
>gi|336321468|ref|YP_004601436.1| helicase domain protein [[Cellvibrio] gilvus ATCC 13127]
gi|336105049|gb|AEI12868.1| helicase domain protein [[Cellvibrio] gilvus ATCC 13127]
Length = 852
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 49/89 (55%), Gaps = 8/89 (8%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
V+ +D +G+G+N+ I ++ +++ K+DG +R L+ E QIAGRAGR G VGEV
Sbjct: 316 VVCGTDTLGVGINVPIRTVVLTSLVKYDGTRMRHLSAREFHQIAGRAGRAGFDT-VGEVV 374
Query: 354 CLDSEDLPLLHKSLLEPSPMLESAGLFPN 382
+ E ++E LE AG P
Sbjct: 375 VMAPE-------HVIENRKALERAGDDPR 396
>gi|255727753|ref|XP_002548802.1| antiviral helicase SKI2 [Candida tropicalis MYA-3404]
gi|240133118|gb|EER32674.1| antiviral helicase SKI2 [Candida tropicalis MYA-3404]
Length = 1247
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/123 (34%), Positives = 59/123 (47%), Gaps = 17/123 (13%)
Query: 234 FSNIQTGDCIVTFSRHAIYRLKKA------------IESRGKHLCSIVYGSLPPETRTRQ 281
F+N + I F A+ RLKK + SRG ++ +G L P +
Sbjct: 606 FNNAKEKSEIHMFIDRAVGRLKKEDRELPQILKIRDMLSRG---IAVHHGGLLPIVKECI 662
Query: 282 ATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAG 341
F A S VL A++ MGLNL ++FS+M+K DG R+L E Q++GRAG
Sbjct: 663 EILF--AKSLVKVLFATETFAMGLNLPTRTVVFSSMRKHDGRSFRNLLPGEFTQMSGRAG 720
Query: 342 RYG 344
R G
Sbjct: 721 RRG 723
>gi|401840058|gb|EJT42980.1| SKI2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 855
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 233 SFSNIQTGDCIVTFSRHAIYRLKKA-------IESRG--KHLCSIVYGSLPPETRTRQAT 283
+F N + I F +I RLKK +++R + ++ +G L P +
Sbjct: 650 NFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEI 709
Query: 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
F + VL A++ MGLNL +IFS+++K DG LR+LT E Q+AGRAGR
Sbjct: 710 LF--SKGFIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 767
Query: 344 G 344
G
Sbjct: 768 G 768
>gi|320593806|gb|EFX06209.1| ATP-dependent RNA helicase dob1 [Grosmannia clavigera kw1407]
Length = 1133
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 36/51 (70%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
VL A++ +GLN+ ++F+T++KFDGV +R LT E Q++GRAGR G
Sbjct: 521 VLFATETFSIGLNMPARTVVFTTVRKFDGVSMRPLTSSEYVQMSGRAGRRG 571
>gi|367014127|ref|XP_003681563.1| hypothetical protein TDEL_0E01090 [Torulaspora delbrueckii]
gi|359749224|emb|CCE92352.1| hypothetical protein TDEL_0E01090 [Torulaspora delbrueckii]
Length = 1257
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/121 (33%), Positives = 57/121 (47%), Gaps = 11/121 (9%)
Query: 233 SFSNIQTGDCIVTFSRHAIYRLKK---------AIESRGKHLCSIVYGSLPPETRTRQAT 283
+F N + I F ++ RLKK I S + ++ +G L P +
Sbjct: 619 NFCNGKEKSQIFMFIEKSVTRLKKEDRELPQILKIRSLLERGIAVHHGGLLPIVKELIEM 678
Query: 284 RFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343
F A VL A++ MGLNL +IFS ++K DG LR+L E Q+AGRAGR
Sbjct: 679 LF--AKGLIRVLFATETFAMGLNLPTRTVIFSEIQKHDGTGLRNLAPGEFTQMAGRAGRR 736
Query: 344 G 344
G
Sbjct: 737 G 737
>gi|212716946|ref|ZP_03325074.1| hypothetical protein BIFCAT_01890 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
gi|212660231|gb|EEB20806.1| hypothetical protein BIFCAT_01890 [Bifidobacterium catenulatum DSM
16992 = JCM 1194]
Length = 860
Score = 55.5 bits (132), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 127/325 (39%), Gaps = 68/325 (20%)
Query: 79 VILHVGPTNSGKTHQAL----SRLESSSSGIYCGPLRLLA----WEVAKRLNKANVSCDL 130
VIL+ PT SGK+ AL + L + Y P++ L +++ + + NV +
Sbjct: 70 VILNT-PTGSGKSLVALGMHFAALCTGRRSYYTAPIKALVSEKFFDLVEVFGRENVG--M 126
Query: 131 ITGQEREEVDG------AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLG 184
ITG D A+ A +D C +DE G RG+++ LL
Sbjct: 127 ITGDTHINADAPIICCTAEILANQALREGRHADVGCVAMDEFHYYGDSERGWAWQVPLLT 186
Query: 185 ICANELHLC----GDPAAVPLIQQILQVTGDDVKV---------QSYERLSPLVPLNVPL 231
+ + L G+ A+ ++ +TG DV + +YE + V L
Sbjct: 187 LPNTQFLLMSATLGNVDAIA--DKLEDMTGTDVDIIADAPRPVPLTYEYTLDSLEKTVEL 244
Query: 232 GSFSNIQTGDCIVTFSRHAIYRLKKAIESRG----KHLCSIV------------------ 269
+F +T +V FS+ A A+ S G + +I
Sbjct: 245 -AFGRGETPIYVVHFSQDAALETANALASTGVSSKEQRAAIAEAIKGTKFTTAFGKILQR 303
Query: 270 ----------YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK 319
G LP R R+ V+ +D +G+G+N+ I ++ + + K
Sbjct: 304 LLRTGVGIHHAGMLP---RYRRLVEQLAQHGLLPVICGTDTLGVGINVPIHSVVLTALTK 360
Query: 320 FDGVELRDLTVPEVKQIAGRAGRYG 344
FDG ++R L E QIAGRAGR G
Sbjct: 361 FDGTKMRKLRAREFHQIAGRAGRMG 385
>gi|227495796|ref|ZP_03926107.1| DEAD/DEAH box helicase domain protein [Actinomyces urogenitalis DSM
15434]
gi|226834655|gb|EEH67038.1| DEAD/DEAH box helicase domain protein [Actinomyces urogenitalis DSM
15434]
Length = 899
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 87/346 (25%), Positives = 136/346 (39%), Gaps = 81/346 (23%)
Query: 65 PHTWYPLARKKVRKVILHVGPTNSGKTHQALS----RLESSSSGIYCGPLRLLA----WE 116
PH L++ + ++ PT SGK+ AL+ L Y PL+ L +E
Sbjct: 49 PHQDEALSQILDGRHVIAATPTGSGKSMIALAAHTASLARGGRSYYTAPLKALVSEKFFE 108
Query: 117 VAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVS-------DYDCAVIDEIQML 169
+ + NV ++TG GA T E+ S D DC ++DE
Sbjct: 109 LIRLFGADNVG--MVTGDSSINA-GAPIICCTAEILANQSLREGEAMDVDCVIMDEFHYY 165
Query: 170 GCKTRGFSFTRALLGICANELHLC----GDPAAVPLIQQILQVTGDDVKV-QSYERLSPL 224
RG+++ LL + ++ L GD + + + + TG +V V + ER PL
Sbjct: 166 ADPQRGWAWQVPLLELPQAQMVLLSATLGDVSF--FVTDMKERTGREVAVIEGAERPVPL 223
Query: 225 VPLNV--PLGSFSN--IQTGDC---IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPET 277
V P+G +Q +V FS+ K+AIE R L S+ L P++
Sbjct: 224 EMEYVVEPIGELLQRLVQQHKAPVYVVHFSQ------KEAIE-RATSLLSV---DLVPKS 273
Query: 278 RTRQAT------RFNDA---------------------------------SSEFDVLVAS 298
R + RF V+ +
Sbjct: 274 RKEEVAAALGSFRFGPGFGATLSRLLRAGIGVHHAGMLPRYRRLVERLAREGLLSVICGT 333
Query: 299 DAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
D +G+G+N+ I ++ +++ KFDG + R LT E QIAGRAGR G
Sbjct: 334 DTLGVGINVPIRSVVLTSLVKFDGAKERHLTAREFHQIAGRAGRAG 379
>gi|385679278|ref|ZP_10053206.1| DEAD/DEAH box helicase [Amycolatopsis sp. ATCC 39116]
Length = 836
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
V+ +D +G+G+N+ I ++FS + K+DGV R L E QIAGRAGR G
Sbjct: 313 VICGTDTLGVGINVPIRTVVFSALTKYDGVRQRHLKAREFHQIAGRAGRAG 363
>gi|391343562|ref|XP_003746078.1| PREDICTED: helicase SKI2W [Metaseiulus occidentalis]
Length = 1137
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
+L A++ MG+N+ ++F ++K+DG + RDL E Q+AGRAGR G K VG V
Sbjct: 581 ILFATETFAMGVNMPARTVVFDRIRKYDGCQFRDLLPAEYIQMAGRAGRRG-KDTVGTVL 639
Query: 354 CLDSEDLP 361
+ D+P
Sbjct: 640 IMIHSDVP 647
>gi|399215847|emb|CCF72535.1| unnamed protein product [Babesia microti strain RI]
Length = 1024
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 58/103 (56%), Gaps = 4/103 (3%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV- 352
VL A++ MG+N+ ++F++++K DG++ R LT E Q+AGRAGR G VG V
Sbjct: 475 VLFATETFAMGVNMPARSVVFTSIRKHDGLKNRILTSSEYTQMAGRAGRRGLD-SVGNVF 533
Query: 353 -TCLDS-EDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLH 393
C+DS DL L L+E S L+S L+ + SR H
Sbjct: 534 IFCVDSPPDLQDLTMMLIEKSTPLKSRFRITYSMLLQVMSRNH 576
>gi|300782796|ref|YP_003763087.1| DEAD/DEAH box helicase [Amycolatopsis mediterranei U32]
gi|384146016|ref|YP_005528832.1| DEAD/DEAH box helicase [Amycolatopsis mediterranei S699]
gi|399534682|ref|YP_006547344.1| DEAD/DEAH box helicase [Amycolatopsis mediterranei S699]
gi|299792310|gb|ADJ42685.1| DEAD/DEAH box helicase [Amycolatopsis mediterranei U32]
gi|340524170|gb|AEK39375.1| DEAD/DEAH box helicase [Amycolatopsis mediterranei S699]
gi|398315452|gb|AFO74399.1| DEAD/DEAH box helicase [Amycolatopsis mediterranei S699]
Length = 834
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
V+ +D +G+G+N+ I ++FS + K+DGV R L E QIAGRAGR G
Sbjct: 313 VICGTDTLGVGINVPIRTVVFSALTKYDGVRQRHLKAREFHQIAGRAGRAG 363
>gi|385302494|gb|EIF46623.1| dead-box family helicase required for mrna export from nucleus
[Dekkera bruxellensis AWRI1499]
Length = 991
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 22/205 (10%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
VL A++ +GLN+ ++F++++K+DG E R ++ E Q++GRAGR G +
Sbjct: 417 VLFATETFSIGLNMPAKTVVFTSVRKWDGTEFRWVSGGEYIQMSGRAGRRGLDDRGIVIM 476
Query: 354 CLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSE 413
+D + P + K +L+ + +++I R+ S E+ +EN+
Sbjct: 477 MIDEKMEPQVAKGMLKGQADRLDSAFHLGYNMILNLLRVEGVSP-----EYMMENS---- 527
Query: 414 NYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDDISS-----QGLTQFATNYSK 468
Y F E V K+ I +L K S +D DDI + LT++ + K
Sbjct: 528 FYQFQKTESVPKIQNQIXEL------KDEVSASHIDHYDDIKEYYDLKEQLTRYXEDERK 581
Query: 469 KGIVQLREIFTPGLGSLRVAEFPVG 493
I+ P L S R+ VG
Sbjct: 582 --IITHPSHILPHLKSGRIINVKVG 604
>gi|115379713|ref|ZP_01466790.1| heliCase, c-terminal:dead/deah box helicase, n-terminal
[Stigmatella aurantiaca DW4/3-1]
gi|310820840|ref|YP_003953198.1| dead/deah box helicase [Stigmatella aurantiaca DW4/3-1]
gi|115363279|gb|EAU62437.1| heliCase, c-terminal:dead/deah box helicase, n-terminal
[Stigmatella aurantiaca DW4/3-1]
gi|309393912|gb|ADO71371.1| DEAD/DEAH box helicase [Stigmatella aurantiaca DW4/3-1]
Length = 846
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 103/236 (43%), Gaps = 45/236 (19%)
Query: 151 MADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE-LHLCGDPAAVPLIQQILQ-V 208
M D + D V+DE + RG ++ LLG+ L + +I++ L+ +
Sbjct: 141 MRDSRAPVDYVVMDEFHYYSDRERGTAWQLPLLGLQNTTFLMMSATLGDTHIIEEGLKKL 200
Query: 209 TGDDV-KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRL---KKAIESRGKH 264
TG DV V+S +R VPL+ +T +V ++ IY + ++A + ++
Sbjct: 201 TGKDVVSVRSAKRP---VPLDFDYRETPLHETIQDLVARGKYPIYLVNFTQRAAAEQAQN 257
Query: 265 LCSIVYGSLPPETRTRQA--------------TRFND----------------------A 288
L S+ + + + RQA RF
Sbjct: 258 LMSVDFCTKEEKEAIRQALMEAPFDTPYGKEFQRFLRHGVGMHHAGLLPKYRLLVEKLAQ 317
Query: 289 SSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
S V+ +D +G+G+N+ I ++F+ + KF+G +L L+V + +QIAGRAGR G
Sbjct: 318 SGHLKVISGTDTLGVGVNIPIRTVLFTQLFKFNGEKLATLSVRDFQQIAGRAGRKG 373
>gi|84996619|ref|XP_953031.1| DEAD-family helicase [Theileria annulata strain Ankara]
gi|65304027|emb|CAI76406.1| DEAD-family helicase, putative [Theileria annulata]
Length = 1069
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 17/157 (10%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG-SKFPVGEV 352
VL A++ MG+N+ ++F+++ K DG+ R LT E Q+AGRAGR G F +
Sbjct: 516 VLFATETFAMGVNMPARSVVFTSIYKHDGINYRYLTSSEYTQMAGRAGRRGLDTFGNVYI 575
Query: 353 TCLDS-EDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKL 411
C D D+ L ++E S LES L+ + SR H I E L++
Sbjct: 576 FCCDEPPDVQDLTNMMIERSTRLESRFRITYNMLLQIQSRDH-----MNITEMMLKS--- 627
Query: 412 SENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPV 448
F E+++K+ + Q+ + HE L + P+
Sbjct: 628 -----FREREKMMKIPLLKKQINKKKHE--LMSLPPI 657
>gi|302524172|ref|ZP_07276514.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces sp.
AA4]
gi|302433067|gb|EFL04883.1| DEAD/DEAH box helicase domain-containing protein [Streptomyces sp.
AA4]
Length = 891
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
V+ +D +G+G+N+ I ++FS + K+DGV R L E QIAGRAGR G
Sbjct: 370 VICGTDTLGVGINVPIRTVVFSALTKYDGVRQRHLKAREFHQIAGRAGRAG 420
>gi|451339543|ref|ZP_21910058.1| putative helicase [Amycolatopsis azurea DSM 43854]
gi|449417749|gb|EMD23387.1| putative helicase [Amycolatopsis azurea DSM 43854]
Length = 834
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
V+ +D +G+G+N+ I ++FS + K+DGV R L E QIAGRAGR G
Sbjct: 313 VICGTDTLGVGINVPIRTVVFSALTKYDGVRQRHLKAREFHQIAGRAGRAG 363
>gi|452952258|gb|EME57693.1| DEAD/DEAH box helicase [Amycolatopsis decaplanina DSM 44594]
Length = 834
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
V+ +D +G+G+N+ I ++FS + K+DGV R L E QIAGRAGR G
Sbjct: 313 VICGTDTLGVGINVPIRTVVFSALTKYDGVRQRHLKAREFHQIAGRAGRAG 363
>gi|334337622|ref|YP_004542774.1| DEAD/DEAH box helicase [Isoptericola variabilis 225]
gi|334107990|gb|AEG44880.1| DEAD/DEAH box helicase domain protein [Isoptericola variabilis 225]
Length = 916
Score = 55.1 bits (131), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
V+ +D +G+G+N+ I ++ +++ KFDG +R LT E QIAGRAGR G VGEV
Sbjct: 345 VVCGTDTLGVGINVPIRTVLMTSLVKFDGERMRHLTAREFHQIAGRAGRAGFDT-VGEVL 403
Query: 354 CLDSE 358
+ E
Sbjct: 404 VMAPE 408
>gi|68479463|ref|XP_716263.1| hypothetical protein CaO19.6425 [Candida albicans SC5314]
gi|68479634|ref|XP_716180.1| hypothetical protein CaO19.13783 [Candida albicans SC5314]
gi|46437839|gb|EAK97179.1| hypothetical protein CaO19.13783 [Candida albicans SC5314]
gi|46437927|gb|EAK97266.1| hypothetical protein CaO19.6425 [Candida albicans SC5314]
Length = 1245
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Query: 234 FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHL---------CSIVYGSLPPETRTRQATR 284
F+N + I F A+ RLKK + L ++ +G L P +
Sbjct: 604 FNNAREKSEIHMFIDRAVGRLKKEDRELPQILKIREMLGRGIAVHHGGLLPIVKECIEIL 663
Query: 285 FNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
F A S VL A++ MGLNL +IFS+M+K DG R+L E Q++GRAGR G
Sbjct: 664 F--AKSLVKVLFATETFAMGLNLPTRTVIFSSMRKHDGRSFRNLLPGEFTQMSGRAGRRG 721
>gi|238880251|gb|EEQ43889.1| antiviral helicase SKI2 [Candida albicans WO-1]
Length = 1246
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/120 (34%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Query: 234 FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHL---------CSIVYGSLPPETRTRQATR 284
F+N + I F A+ RLKK + L ++ +G L P +
Sbjct: 605 FNNAREKSEIHMFIDRAVGRLKKEDRELPQILKIREMLGRGIAVHHGGLLPIVKECIEIL 664
Query: 285 FNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
F A S VL A++ MGLNL +IFS+M+K DG R+L E Q++GRAGR G
Sbjct: 665 F--AKSLVKVLFATETFAMGLNLPTRTVIFSSMRKHDGRSFRNLLPGEFTQMSGRAGRRG 722
>gi|301627725|ref|XP_002943020.1| PREDICTED: helicase SKI2W [Xenopus (Silurana) tropicalis]
Length = 1249
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 50/97 (51%), Gaps = 9/97 (9%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
+L A++ MG+N+ ++F +++K DG RDLT E Q+AGRAGR G G V
Sbjct: 658 ILFATETFAMGVNMPARTVVFDSIRKHDGSNFRDLTPGEYIQMAGRAGRRGLD-NTGMVI 716
Query: 354 CLDSEDLPL---LHKSLLEPSPMLESAGLFPNFDLIY 387
L D+P LHK +L L+S F L Y
Sbjct: 717 ILCKADVPEMSDLHKMMLGKPTQLQS-----QFRLTY 748
>gi|126309591|ref|XP_001369051.1| PREDICTED: helicase SKI2W [Monodelphis domestica]
Length = 1249
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
VL A++ MG+N+ ++F +M+K DG RDL E Q+AGRAGR G P G V
Sbjct: 661 VLFATETFAMGVNMPARTVVFDSMRKHDGATFRDLLPGEYVQMAGRAGRRGLD-PTGTVI 719
Query: 354 CLDSEDLPL---LHKSLLEPSPMLESAGLFPNFDLIY 387
L +P LH+ +L L+S F L Y
Sbjct: 720 LLCKGRVPEMADLHRMMLGKPSQLQS-----QFRLTY 751
>gi|452822286|gb|EME29307.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 1249
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
VL A++ MG+N+ +IFS+++K DG + R + E Q+AGRAGR G VG V
Sbjct: 684 VLFATETFAMGVNMPAKTVIFSSIRKHDGRKFRWMQPGEYIQMAGRAGRRGID-SVGTVL 742
Query: 354 CLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIY 387
EDLP + ++L + + L F L Y
Sbjct: 743 LFLEEDLPEM--NILRKVMIGQPVNLLSQFRLTY 774
>gi|344307274|ref|XP_003422307.1| PREDICTED: helicase SKI2W [Loxodonta africana]
Length = 1246
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
VL A++ MG+N+ ++F TM+K DG RDL E Q+AGRAGR G P G V
Sbjct: 658 VLFATETFAMGVNMPARTVVFDTMRKHDGSTFRDLLPGEYVQMAGRAGRRGLD-PTGTVI 716
Query: 354 CLDSEDLPL---LHKSLLEPSPMLESAGLFPNFDLIY 387
L +P LH+ ++ L+S F L Y
Sbjct: 717 LLCKGRVPEMADLHRMMMGKPSQLQS-----QFRLTY 748
>gi|326436235|gb|EGD81805.1| DEAD/DEAH box helicase [Salpingoeca sp. ATCC 50818]
Length = 1034
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 34/51 (66%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
VL A++ MGLN+ ++FS +KKFDG E R L+ E Q++GRAGR G
Sbjct: 472 VLFATETFAMGLNMPAKTVVFSNVKKFDGKEFRPLSSGEYIQMSGRAGRRG 522
>gi|395533841|ref|XP_003768961.1| PREDICTED: helicase SKI2W [Sarcophilus harrisii]
Length = 1249
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/97 (37%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
VL A++ MG+N+ ++F +M+K DG RDL E Q+AGRAGR G P G V
Sbjct: 661 VLFATETFAMGVNMPARTVVFDSMRKHDGATFRDLLPGEYVQMAGRAGRRGLD-PTGTVI 719
Query: 354 CLDSEDLPL---LHKSLLEPSPMLESAGLFPNFDLIY 387
L +P LH+ +L L+S F L Y
Sbjct: 720 LLCKGRVPEMADLHRMMLGKPSQLQS-----QFRLTY 751
>gi|294945500|ref|XP_002784711.1| helicase with zinc finger protein motif, putative [Perkinsus
marinus ATCC 50983]
gi|239897896|gb|EER16507.1| helicase with zinc finger protein motif, putative [Perkinsus
marinus ATCC 50983]
Length = 1086
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
VL A++ MG+N+ +IFS+++K DG + R L E Q++GRAGR G VG V
Sbjct: 480 VLFATETFAMGVNMPARSVIFSSIRKHDGSKFRYLLPTEYTQMSGRAGRRGLD-SVGNVY 538
Query: 354 CLDSEDLPLL 363
L +E+LP L
Sbjct: 539 VLAAEELPDL 548
>gi|311744414|ref|ZP_07718215.1| DEAD/DEAH box helicase [Aeromicrobium marinum DSM 15272]
gi|311312219|gb|EFQ82135.1| DEAD/DEAH box helicase [Aeromicrobium marinum DSM 15272]
Length = 839
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 35/51 (68%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
V+ +D +G+G+N+ I ++FS + K+DG R L V E +QIAGRAGR G
Sbjct: 315 VVCGTDTLGVGINVPIRTVLFSGLSKYDGTRQRQLQVREFQQIAGRAGRAG 365
>gi|336120721|ref|YP_004575507.1| ATP-dependent helicase [Microlunatus phosphovorus NM-1]
gi|334688519|dbj|BAK38104.1| putative ATP-dependent helicase [Microlunatus phosphovorus NM-1]
Length = 799
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 37/51 (72%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
++ +D +G+G+N+ I ++F+++ K+DGV+ R LT E QIAGRAGR G
Sbjct: 266 IICGTDTLGVGINVPIRTVLFTSLSKYDGVKPRLLTAREFHQIAGRAGRAG 316
>gi|294899270|ref|XP_002776564.1| helicase with zinc finger protein motif, putative [Perkinsus
marinus ATCC 50983]
gi|239883606|gb|EER08380.1| helicase with zinc finger protein motif, putative [Perkinsus
marinus ATCC 50983]
Length = 1069
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
VL A++ MG+N+ +IFS+++K DG + R L E Q++GRAGR G VG V
Sbjct: 462 VLFATETFAMGVNMPARSVIFSSIRKHDGSKFRYLLPTEYTQMSGRAGRRGLD-SVGNVY 520
Query: 354 CLDSEDLPLL 363
L +E+LP L
Sbjct: 521 VLAAEELPDL 530
>gi|330918124|ref|XP_003298097.1| hypothetical protein PTT_08699 [Pyrenophora teres f. teres 0-1]
gi|311328882|gb|EFQ93791.1| hypothetical protein PTT_08699 [Pyrenophora teres f. teres 0-1]
Length = 1298
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 251 IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS 310
I RL++ + SRG ++ +G + P + F A + VL A++ MGLNL
Sbjct: 673 IKRLRELL-SRG---IAVHHGGMLPIVKEVVEILF--AKTLVKVLFATETFAMGLNLPTR 726
Query: 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
++FS +K DG E RDL E Q+AGRAGR G
Sbjct: 727 TVVFSGFRKHDGREFRDLLPGEYTQMAGRAGRRG 760
>gi|296129034|ref|YP_003636284.1| DEAD/DEAH box helicase [Cellulomonas flavigena DSM 20109]
gi|296020849|gb|ADG74085.1| DEAD/DEAH box helicase domain protein [Cellulomonas flavigena DSM
20109]
Length = 866
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
V+ +D +G+G+N+ I + +++ K+DGV +R LT E QIAGRAGR G VGEV
Sbjct: 320 VVCGTDTLGVGINVPIRTVALTSLVKYDGVRMRHLTAREFHQIAGRAGRAGFDT-VGEVV 378
Query: 354 C 354
Sbjct: 379 V 379
>gi|71003748|ref|XP_756540.1| hypothetical protein UM00393.1 [Ustilago maydis 521]
gi|46095704|gb|EAK80937.1| hypothetical protein UM00393.1 [Ustilago maydis 521]
Length = 1301
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 91/195 (46%), Gaps = 15/195 (7%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
VL A++ MG+N+ ++FS+++K DG R+L E Q++GRAGR G G V
Sbjct: 726 VLFATETFAMGVNMPARSVVFSSIRKHDGHGFRELLPGEYTQMSGRAGRRGLD-ATGVVI 784
Query: 354 CLDSEDLP---LLHKSLL-EPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENA 409
++ LP +LHK+LL +P+ + S+ +++I R+ I F ENA
Sbjct: 785 INAADQLPETAVLHKTLLGQPTKL--SSQFRLTYNMILNLLRVEALKVEEMIKRSFSENA 842
Query: 410 --KLSENYFFANCEEVLKVATVIDQLPLRLHEK----YLFCISPVDMNDDIS--SQGLTQ 461
K+ + E K+A P L E+ Y C + V N + + G Q
Sbjct: 843 AQKMLPDQQKKAQELEKKLAKAQHPQPPELDEQMSTYYDLCAAVVASNQSLFELALGHQQ 902
Query: 462 FATNYSKKGIVQLRE 476
A N+ +V LR+
Sbjct: 903 GAKNFGAGRVVILRD 917
>gi|125545706|gb|EAY91845.1| hypothetical protein OsI_13490 [Oryza sativa Indica Group]
Length = 155
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 15/55 (27%)
Query: 442 LFCISPVDMNDDISSQGL---------------TQFATNYSKKGIVQLREIFTPG 481
+F ++PVD+ DDIS++GL QFA NY+KKGIV+L+EIFTPG
Sbjct: 42 VFDLNPVDIRDDISTKGLIQANIFETISLIFFEMQFAENYAKKGIVRLKEIFTPG 96
>gi|406602291|emb|CCH46129.1| antiviral helicase SKI2 [Wickerhamomyces ciferrii]
Length = 1263
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 11/120 (9%)
Query: 234 FSNIQTGDCIVTFSRHAIYRLKK---------AIESRGKHLCSIVYGSLPPETRTRQATR 284
F N + I F A+ RLKK AI ++ +G L P +
Sbjct: 623 FCNAKEKSQIHMFIDKAVARLKKEDRELPQIIAIREMLSRGIAVHHGGLLPIVKEVIEIL 682
Query: 285 FNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
F + + VL A++ MGLNL ++FS ++K DG RDL E Q++GRAGR G
Sbjct: 683 F--SKTLIKVLFATETFAMGLNLPTRTVVFSELRKHDGTGFRDLLPGEFTQMSGRAGRRG 740
>gi|365824422|ref|ZP_09366496.1| hypothetical protein HMPREF0045_00132 [Actinomyces graevenitzii
C83]
gi|365259482|gb|EHM89467.1| hypothetical protein HMPREF0045_00132 [Actinomyces graevenitzii
C83]
Length = 884
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 36/51 (70%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
V+ +D +G+G+N+ I ++F+++ KFDG + R LT E QIAGRAGR G
Sbjct: 326 VICGTDTLGVGINVPIRCVVFTSLVKFDGAKERHLTAREFHQIAGRAGRAG 376
>gi|379735837|ref|YP_005329343.1| Superfamily II RNA helicase [Blastococcus saxobsidens DD2]
gi|378783644|emb|CCG03312.1| Superfamily II RNA helicase [Blastococcus saxobsidens DD2]
Length = 853
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 80/319 (25%), Positives = 122/319 (38%), Gaps = 67/319 (21%)
Query: 85 PTNSGK----THQALSRLESSSSGIYCGPLRLLAWE----VAKRLNKANVSCDLITGQER 136
PT SGK T + L + G Y P++ L E + ANV ++TG
Sbjct: 70 PTGSGKSLVATGAQYAALAAGRRGYYTAPIKALVSEKFFALCGIFGAANVG--MLTGDAS 127
Query: 137 EEVDGAKHRAVTVE-MADVV------SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE 189
GA A T E +A++ +D V+DE G RG+++ LL + +
Sbjct: 128 VNA-GAPIIACTAEVLANIALREGADADIGLVVMDEFHFYGDPDRGWAWQVPLLELPKAQ 186
Query: 190 LHL------------------CGDPAA--------VPL------------IQQILQVTGD 211
L G P A VPL IQ++L
Sbjct: 187 FLLMSATLGDVTSLREDLTRRTGRPTALVANAVRPVPLHHYYATTPMHETIQELLDTQQA 246
Query: 212 DVKVQSY------ERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHL 265
V V + ER L+ +NV + I F + + + +H
Sbjct: 247 PVYVVHFTQASALERAQALMSVNVATKE-QKAAIAEMIGGFRFSSAF--GTTLSRLVRHG 303
Query: 266 CSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVEL 325
+ + + P+ R R + A V+ +D +G+G+N+ I ++FS + K+DG
Sbjct: 304 IGVHHAGMLPKYR-RLVEQLAQAGL-LKVICGTDTLGVGINVPIRTVVFSALSKYDGTRT 361
Query: 326 RDLTVPEVKQIAGRAGRYG 344
R L V E QIAGRAGR G
Sbjct: 362 RLLQVREFHQIAGRAGRAG 380
>gi|229816652|ref|ZP_04446941.1| hypothetical protein COLINT_03701 [Collinsella intestinalis DSM
13280]
gi|229807780|gb|EEP43593.1| hypothetical protein COLINT_03701 [Collinsella intestinalis DSM
13280]
Length = 927
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 125/323 (38%), Gaps = 75/323 (23%)
Query: 85 PTNSGKTHQALS----RLESSSSGIYCGPLRLLAWE----VAKRLNKANVSCDLITGQER 136
PT SGK+ AL + S Y P++ L E + L + NV +ITG
Sbjct: 83 PTGSGKSLVALGMMFMAMASGQRAYYTAPIKALVSEKFFYLVDILGRDNVG--MITGDSH 140
Query: 137 EEVDGAKHRAVTVE-MADVV------SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE 189
GA T E +A+ +D C +DE RG+++ LL + +
Sbjct: 141 INT-GAPVICCTAEILANQALREGEDTDVGCVAMDEFHFFSDPDRGWAWQVPLLTLPHTQ 199
Query: 190 LHLC----GDPAAVPLIQQILQVTGDDVKV---------QSYERLSPLVPLNVPLGSFSN 236
L GD A+ + + TG D+++ SYE + + V L
Sbjct: 200 FLLMSATLGDMTAIG--DTLTRTTGRDLELIADAPRPVPLSYEYVKTALEGTVELA---- 253
Query: 237 IQTGDC---IVTFSRHAIYRLKKAIESRG---------------------------KHLC 266
++ GD IV FS+ A + +A+ S G KHL
Sbjct: 254 LRQGDSPLYIVHFSQDAALQSARALASYGVASKEQREAIKEAIKGGRFTTAFGKTLKHLI 313
Query: 267 SIVYG-----SLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFD 321
S G LP R R V+ +D +G+G+N+ I ++ + + KFD
Sbjct: 314 SSGVGLHHAGMLP---RYRLLVEKLAQQGLLPVICGTDTLGVGINVPIHTVLLTGLTKFD 370
Query: 322 GVELRDLTVPEVKQIAGRAGRYG 344
G + R L E QIAGRAGR G
Sbjct: 371 GYKQRRLRSREFHQIAGRAGRSG 393
>gi|403511104|ref|YP_006642742.1| DEAD/DEAH box helicase family protein [Nocardiopsis alba ATCC
BAA-2165]
gi|402803590|gb|AFR11000.1| DEAD/DEAH box helicase family protein [Nocardiopsis alba ATCC
BAA-2165]
Length = 834
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
Query: 263 KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDG 322
+H + + + P+ R R R A V+ +D +G+G+N+ I ++F+ + K+DG
Sbjct: 284 RHGIGVHHAGMLPKYR-RLVERLAQAGL-LKVICGTDTLGVGVNVPIRTVLFTALSKYDG 341
Query: 323 VELRDLTVPEVKQIAGRAGRYG 344
V +R L E QIAGRAGR G
Sbjct: 342 VRVRRLRAREFHQIAGRAGRAG 363
>gi|299756424|ref|XP_002912202.1| translation repressor [Coprinopsis cinerea okayama7#130]
gi|298411671|gb|EFI28708.1| translation repressor [Coprinopsis cinerea okayama7#130]
Length = 1248
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
+L A++ MG+N+ ++FS+M+K DG RD+ E Q+AGRAGR G P G V
Sbjct: 670 ILFATETFAMGVNMPAKCVVFSSMRKHDGKSFRDILPGEYTQMAGRAGRRGLD-PTGTVI 728
Query: 354 CLDSEDLP 361
+ ++LP
Sbjct: 729 IVCGDNLP 736
>gi|71028712|ref|XP_763999.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350953|gb|EAN31716.1| hypothetical protein TP04_0364 [Theileria parva]
Length = 1069
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/157 (29%), Positives = 75/157 (47%), Gaps = 17/157 (10%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG-SKFPVGEV 352
VL A++ MG+N+ ++F+++ K DG+ R LT E Q+AGRAGR G F +
Sbjct: 516 VLFATETFAMGVNMPARSVVFTSIYKHDGITYRYLTSSEYTQMAGRAGRRGLDTFGNVYI 575
Query: 353 TCLDS-EDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKL 411
C D D+ L ++E S LES L+ + SR H I E L++
Sbjct: 576 FCSDEPPDVQDLTNMMIERSTRLESRFRITYNMLLQIQSRDH-----MNITEMMLKS--- 627
Query: 412 SENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPV 448
F E+++K+ + Q+ + HE L + P+
Sbjct: 628 -----FREREKMMKIPLLKKQINKKKHE--LMSLPPI 657
>gi|449473300|ref|XP_004153842.1| PREDICTED: helicase SKI2W-like, partial [Cucumis sativus]
Length = 520
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 52/98 (53%), Gaps = 9/98 (9%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
VL +++ MG+N ++F T++KFDG E R L E Q+AGRAGR G +G V
Sbjct: 381 VLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQLLPGEYTQMAGRAGRRGLD-KIGTVI 439
Query: 354 CLDSEDLPL---LHKSLLEPSPMLESAGLFPNFDLIYM 388
+ E++P L + ++ + LES F L Y+
Sbjct: 440 VMCREEIPEEKDLKRVIVGTATKLES-----QFRLTYI 472
>gi|335051326|ref|ZP_08544251.1| DEAD/DEAH box helicase [Propionibacterium sp. 409-HC1]
gi|333767069|gb|EGL44332.1| DEAD/DEAH box helicase [Propionibacterium sp. 409-HC1]
Length = 505
Score = 54.7 bits (130), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)
Query: 291 EFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 350
+ V+ +D +G+G+N+ I ++F+++ KFDG R L E QIAGRAGR G VG
Sbjct: 286 KLKVICGTDTLGVGINVPIRTVMFTSLTKFDGRRTRVLKSREFHQIAGRAGRAGFD-TVG 344
Query: 351 EVTCLDSEDLPLLHKSL 367
V E + HK+L
Sbjct: 345 YVVAQAPEHVIANHKAL 361
>gi|407927428|gb|EKG20322.1| Helicase [Macrophomina phaseolina MS6]
Length = 1283
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 55/102 (53%), Gaps = 7/102 (6%)
Query: 251 IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS 310
I RL++ + SRG ++ +G + P + F A + +L A++ MGLNL
Sbjct: 672 IRRLRELL-SRG---IAVHHGGMLPIVKEVVEILF--AKTLVKILFATETFAMGLNLPTR 725
Query: 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEV 352
++FS +K DG + RDL E Q+AGRAGR G PVG V
Sbjct: 726 TVVFSGYRKHDGRQFRDLLPGEYTQMAGRAGRRGLD-PVGSV 766
>gi|189205050|ref|XP_001938860.1| RNA helicase involved in mRNA catabolism [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187985959|gb|EDU51447.1| RNA helicase involved in mRNA catabolism [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 1120
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 251 IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS 310
I RL++ + SRG ++ +G + P + F A + VL A++ MGLNL
Sbjct: 626 IKRLRELL-SRG---IAVHHGGMLPIVKEVVEILF--AKTLVKVLFATETFAMGLNLPTR 679
Query: 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
++FS +K DG E RDL E Q+AGRAGR G
Sbjct: 680 TVVFSGFRKHDGREFRDLLPGEYTQMAGRAGRRG 713
>gi|383822612|ref|ZP_09977829.1| superfamily II RNA helicase [Mycobacterium phlei RIVM601174]
gi|383330699|gb|EID09219.1| superfamily II RNA helicase [Mycobacterium phlei RIVM601174]
Length = 845
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
V+ +D +G+G+N+ I ++FS + K+DGV R L E QIAGRAGR G
Sbjct: 323 VICGTDTLGVGINVPIRTVVFSALSKYDGVRTRLLNAREFHQIAGRAGRAG 373
>gi|88855071|ref|ZP_01129736.1| putative helicase [marine actinobacterium PHSC20C1]
gi|88815599|gb|EAR25456.1| putative helicase [marine actinobacterium PHSC20C1]
Length = 849
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
V+ +D +G+G+N+ I ++ + + K+DG+ +R LT E QIAGRAGR G
Sbjct: 314 VICGTDTLGVGINVPIRTVLLTQLTKYDGIRMRQLTAREFHQIAGRAGRAG 364
>gi|351713165|gb|EHB16084.1| Helicase SKI2W [Heterocephalus glaber]
Length = 1238
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 49/97 (50%), Gaps = 9/97 (9%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
VL A++ MG+N+ ++F +M+K DG RDL E Q+AGRAGR G P G V
Sbjct: 685 VLFATETFAMGVNMPARTVVFDSMRKHDGSAFRDLLPGEYVQMAGRAGRRGLD-PTGTVV 743
Query: 354 CLDSEDLPL---LHKSLLEPSPMLESAGLFPNFDLIY 387
L +P LH+ ++ L+S F L Y
Sbjct: 744 LLCKARVPEMADLHRMMMGKPSQLQS-----QFRLTY 775
>gi|403224053|dbj|BAM42183.1| DEAD-box family helicase [Theileria orientalis strain Shintoku]
Length = 1071
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 64/120 (53%), Gaps = 3/120 (2%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG-SKFPVGEV 352
VL A++ MG+N+ ++F+++ K DG++ R LT E Q+AGRAGR G F +
Sbjct: 518 VLFATETFAMGVNMPARSVVFTSIYKHDGIKYRYLTSSEYTQMAGRAGRRGLDTFGNVYI 577
Query: 353 TCLD-SEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKL 411
C D + D+ L ++E S LES L+ + SR H + + +L+ F E K+
Sbjct: 578 FCSDEAPDVQDLTNMIIERSTRLESRFRITYNMLLQIQSRDHMNITEM-MLKSFREREKM 636
>gi|396459815|ref|XP_003834520.1| hypothetical protein LEMA_P061890.1 [Leptosphaeria maculans JN3]
gi|312211069|emb|CBX91155.1| hypothetical protein LEMA_P061890.1 [Leptosphaeria maculans JN3]
Length = 1281
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/94 (38%), Positives = 51/94 (54%), Gaps = 6/94 (6%)
Query: 251 IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS 310
I RL++ + SRG ++ +G + P + F A + VL A++ MGLNL
Sbjct: 670 IKRLRELL-SRG---IAVHHGGMLPIVKEVVEILF--AKTLVKVLFATETFAMGLNLPTR 723
Query: 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
++FS +K DG E RDL E Q+AGRAGR G
Sbjct: 724 TVVFSGFRKHDGREFRDLLPGEYTQMAGRAGRRG 757
>gi|357019047|ref|ZP_09081305.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
thermoresistibile ATCC 19527]
gi|356481108|gb|EHI14218.1| DEAD/DEAH box helicase domain-containing protein [Mycobacterium
thermoresistibile ATCC 19527]
Length = 851
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
V+ +D +G+G+N+ I ++FS + K+DGV R L E QIAGRAGR G
Sbjct: 327 VICGTDTLGVGINVPIRTVVFSALSKYDGVRTRLLNAREFHQIAGRAGRAG 377
>gi|284991492|ref|YP_003410046.1| DEAD/DEAH box helicase domain-containing protein [Geodermatophilus
obscurus DSM 43160]
gi|284064737|gb|ADB75675.1| DEAD/DEAH box helicase domain protein [Geodermatophilus obscurus
DSM 43160]
Length = 847
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
V+ +D +G+G+N+ I ++FS + K+DG R L V E QIAGRAGR G
Sbjct: 326 VICGTDTLGVGINVPIRTVVFSALSKYDGTRTRLLQVREFHQIAGRAGRAG 376
>gi|433648753|ref|YP_007293755.1| superfamily II RNA helicase [Mycobacterium smegmatis JS623]
gi|433298530|gb|AGB24350.1| superfamily II RNA helicase [Mycobacterium smegmatis JS623]
Length = 849
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 34/51 (66%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
V+ +D +G+G+N+ I ++FS + K+DGV R L E QIAGRAGR G
Sbjct: 325 VICGTDTLGVGINVPIRTVVFSALSKYDGVRTRLLNAREFHQIAGRAGRAG 375
>gi|269794417|ref|YP_003313872.1| superfamily II RNA helicase [Sanguibacter keddieii DSM 10542]
gi|269096602|gb|ACZ21038.1| superfamily II RNA helicase [Sanguibacter keddieii DSM 10542]
Length = 869
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 8/88 (9%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353
V+ +D +G+G+N+ I ++ +++ KFDG +R LT E QIAGRAGR G +G+V
Sbjct: 330 VVCGTDTLGVGINVPIRTVLLTSVVKFDGERMRHLTAREFHQIAGRAGRAGYD-TMGDVI 388
Query: 354 CLDSEDLPLLHKSLLEPSPMLESAGLFP 381
+ E ++E +LE AG P
Sbjct: 389 VMAPE-------HVIENRKLLERAGDDP 409
>gi|288918025|ref|ZP_06412383.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
gi|288350543|gb|EFC84762.1| DEAD/DEAH box helicase domain protein [Frankia sp. EUN1f]
Length = 879
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
V+ +D +G+G+N+ I ++F+ + K+DG R LT E QIAGRAGR G
Sbjct: 354 VICGTDTLGVGINVPIRTVVFTALSKYDGTRTRILTAREFHQIAGRAGRAG 404
>gi|241959260|ref|XP_002422349.1| RNA helicase, putative; antiviral helicase ski2 homologue,
putative; superkiller protein 2 homologue, putative
[Candida dubliniensis CD36]
gi|223645694|emb|CAX40355.1| RNA helicase, putative [Candida dubliniensis CD36]
Length = 1233
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 57/120 (47%), Gaps = 11/120 (9%)
Query: 234 FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHL---------CSIVYGSLPPETRTRQATR 284
F+N + I F A+ RLKK + L ++ +G L P +
Sbjct: 592 FNNAREKSEIHMFIDRAVGRLKKEDRELPQILKIREMLGRGIAVHHGGLLPIVKECIEIL 651
Query: 285 FNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
F A S VL A++ MGLNL ++FS+M+K DG R+L E Q++GRAGR G
Sbjct: 652 F--AKSLVKVLFATETFAMGLNLPTRTVVFSSMRKHDGRSFRNLLPGEFTQMSGRAGRRG 709
>gi|72161282|ref|YP_288939.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal, partial
[Thermobifida fusca YX]
gi|71915014|gb|AAZ54916.1| helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
[Thermobifida fusca YX]
Length = 838
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344
V+ +D +G+G+N+ I ++F+ + K+DG +R LT E QIAGRAGR G
Sbjct: 314 VICGTDTLGVGVNVPIRTVLFTALSKYDGSRVRRLTAREFHQIAGRAGRAG 364
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,626,393,008
Number of Sequences: 23463169
Number of extensions: 318517296
Number of successful extensions: 711305
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2401
Number of HSP's successfully gapped in prelim test: 267
Number of HSP's that attempted gapping in prelim test: 705391
Number of HSP's gapped (non-prelim): 3406
length of query: 499
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 352
effective length of database: 8,910,109,524
effective search space: 3136358552448
effective search space used: 3136358552448
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 79 (35.0 bits)