Query 010836
Match_columns 499
No_of_seqs 467 out of 3380
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 05:07:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010836.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010836hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0953 Mitochondrial RNA heli 100.0 4.7E-76 1E-80 573.0 33.9 433 58-490 172-608 (700)
2 KOG0330 ATP-dependent RNA heli 100.0 1.5E-43 3.3E-48 332.6 17.4 297 40-358 67-406 (476)
3 KOG0331 ATP-dependent RNA heli 100.0 8.4E-43 1.8E-47 348.5 21.9 299 39-359 96-448 (519)
4 TIGR01970 DEAH_box_HrpB ATP-de 100.0 6.9E-41 1.5E-45 360.9 28.6 360 76-450 16-430 (819)
5 KOG0345 ATP-dependent RNA heli 100.0 3.5E-41 7.6E-46 323.6 23.0 305 40-367 12-372 (567)
6 PRK02362 ski2-like helicase; P 100.0 2.8E-40 6.1E-45 360.0 30.0 327 41-377 8-418 (737)
7 PRK04837 ATP-dependent RNA hel 100.0 1.5E-40 3.2E-45 341.5 25.5 296 40-359 14-362 (423)
8 PRK11664 ATP-dependent RNA hel 100.0 3.6E-40 7.7E-45 356.3 27.6 359 76-449 19-432 (812)
9 PRK10590 ATP-dependent RNA hel 100.0 7.6E-40 1.6E-44 338.5 28.3 297 40-359 7-352 (456)
10 PRK01172 ski2-like helicase; P 100.0 1.5E-39 3.3E-44 351.9 31.5 388 41-443 8-487 (674)
11 PTZ00110 helicase; Provisional 100.0 7.9E-40 1.7E-44 343.5 27.0 297 40-359 136-484 (545)
12 KOG0922 DEAH-box RNA helicase 100.0 1.6E-40 3.6E-45 333.4 20.3 359 76-455 65-490 (674)
13 PRK11776 ATP-dependent RNA hel 100.0 5.2E-40 1.1E-44 341.1 24.0 296 41-359 11-349 (460)
14 PRK04537 ATP-dependent RNA hel 100.0 6.8E-40 1.5E-44 345.1 25.0 295 41-359 16-364 (572)
15 COG0513 SrmB Superfamily II DN 100.0 8.3E-40 1.8E-44 340.2 25.0 294 41-358 36-379 (513)
16 PLN00206 DEAD-box ATP-dependen 100.0 2.3E-39 5E-44 339.0 27.2 295 40-359 127-475 (518)
17 TIGR00614 recQ_fam ATP-depende 100.0 3.1E-39 6.8E-44 335.0 26.5 295 56-370 6-345 (470)
18 PRK11192 ATP-dependent RNA hel 100.0 4.8E-39 1E-43 331.8 27.1 296 40-358 7-351 (434)
19 PRK11634 ATP-dependent RNA hel 100.0 4.7E-39 1E-43 340.6 26.0 296 40-359 12-352 (629)
20 PLN03137 ATP-dependent DNA hel 100.0 1.5E-38 3.1E-43 341.4 27.2 303 43-368 446-797 (1195)
21 PRK01297 ATP-dependent RNA hel 100.0 2.2E-38 4.7E-43 329.8 27.8 298 40-359 93-442 (475)
22 KOG0923 mRNA splicing factor A 100.0 2.3E-39 4.9E-44 321.8 18.7 355 76-450 279-701 (902)
23 KOG0343 RNA Helicase [RNA proc 100.0 1.2E-38 2.6E-43 311.0 20.1 333 40-394 75-463 (758)
24 TIGR03817 DECH_helic helicase/ 100.0 1.9E-38 4.2E-43 342.3 23.4 296 40-358 20-385 (742)
25 PRK11057 ATP-dependent DNA hel 100.0 1.5E-37 3.2E-42 330.7 29.7 307 41-371 9-356 (607)
26 KOG0338 ATP-dependent RNA heli 100.0 4.8E-39 1E-43 311.1 16.2 306 40-369 187-544 (691)
27 KOG0333 U5 snRNP-like RNA heli 100.0 2.7E-38 6E-43 307.0 21.3 298 40-359 251-624 (673)
28 KOG0342 ATP-dependent RNA heli 100.0 4.7E-38 1E-42 304.1 22.1 308 39-370 87-449 (543)
29 KOG0340 ATP-dependent RNA heli 100.0 7E-38 1.5E-42 291.2 21.7 312 40-373 13-379 (442)
30 PRK00254 ski2-like helicase; P 100.0 4.5E-37 9.7E-42 334.2 30.9 323 41-374 8-405 (720)
31 PRK13767 ATP-dependent helicas 100.0 2.5E-37 5.5E-42 340.0 28.9 373 37-433 14-475 (876)
32 COG1204 Superfamily II helicas 100.0 7.4E-38 1.6E-42 334.2 23.9 328 39-375 14-427 (766)
33 PTZ00424 helicase 45; Provisio 100.0 2E-37 4.3E-42 317.2 25.9 298 40-360 34-375 (401)
34 KOG0924 mRNA splicing factor A 100.0 1E-37 2.2E-42 310.4 19.5 365 68-455 364-797 (1042)
35 KOG0348 ATP-dependent RNA heli 100.0 5E-37 1.1E-41 298.8 23.2 313 40-373 142-568 (708)
36 TIGR01389 recQ ATP-dependent D 100.0 1E-36 2.2E-41 325.2 27.2 294 57-369 9-342 (591)
37 COG1643 HrpA HrpA-like helicas 100.0 1E-37 2.2E-42 331.2 18.4 355 76-450 64-482 (845)
38 KOG0328 Predicted ATP-dependen 100.0 1.8E-37 3.9E-42 280.0 17.1 297 40-359 33-373 (400)
39 COG1201 Lhr Lhr-like helicases 100.0 1.3E-36 2.7E-41 320.5 26.2 372 37-432 4-438 (814)
40 PRK11131 ATP-dependent RNA hel 100.0 5.5E-36 1.2E-40 328.8 28.7 365 76-455 88-515 (1294)
41 COG0514 RecQ Superfamily II DN 100.0 4.9E-36 1.1E-40 305.5 25.1 297 57-372 13-351 (590)
42 KOG0335 ATP-dependent RNA heli 100.0 2.7E-36 5.8E-41 296.8 22.1 299 39-359 79-444 (482)
43 TIGR01967 DEAH_box_HrpA ATP-de 100.0 4.6E-36 1E-40 330.6 24.7 363 76-453 81-504 (1283)
44 KOG0336 ATP-dependent RNA heli 100.0 9.8E-36 2.1E-40 281.1 19.8 294 41-356 227-569 (629)
45 KOG0925 mRNA splicing factor A 100.0 8.3E-37 1.8E-41 294.1 12.7 400 41-488 32-503 (699)
46 PHA02653 RNA helicase NPH-II; 100.0 2.7E-35 5.9E-40 310.6 24.1 331 64-413 167-570 (675)
47 COG1202 Superfamily II helicas 100.0 4.4E-36 9.6E-41 294.5 16.7 305 40-359 200-553 (830)
48 KOG0332 ATP-dependent RNA heli 100.0 2.3E-35 5E-40 276.0 19.2 318 40-373 96-462 (477)
49 KOG0952 DNA/RNA helicase MER3/ 100.0 1.2E-34 2.5E-39 301.6 26.3 311 57-372 106-505 (1230)
50 KOG0326 ATP-dependent RNA heli 100.0 7.3E-36 1.6E-40 273.9 13.4 294 41-356 92-426 (459)
51 KOG0339 ATP-dependent RNA heli 100.0 8.8E-34 1.9E-38 274.4 22.2 299 40-360 229-576 (731)
52 KOG0347 RNA helicase [RNA proc 100.0 1.4E-34 3.1E-39 282.5 15.5 302 40-366 187-578 (731)
53 PRK09751 putative ATP-dependen 100.0 3.8E-33 8.3E-38 311.6 28.1 334 82-432 1-461 (1490)
54 KOG0346 RNA helicase [RNA proc 100.0 1.5E-33 3.2E-38 268.9 18.5 296 40-359 25-410 (569)
55 TIGR00580 mfd transcription-re 100.0 2.7E-33 5.8E-38 305.2 22.1 281 57-358 448-769 (926)
56 KOG0926 DEAH-box RNA helicase 100.0 7.6E-34 1.6E-38 287.3 16.2 355 75-450 269-799 (1172)
57 PRK10689 transcription-repair 100.0 1.2E-32 2.7E-37 306.2 22.3 281 57-358 597-918 (1147)
58 KOG0341 DEAD-box protein abstr 100.0 1.5E-33 3.1E-38 264.8 11.4 295 40-359 176-528 (610)
59 PRK10917 ATP-dependent DNA hel 100.0 2.2E-31 4.7E-36 286.5 26.9 278 58-357 259-587 (681)
60 KOG0350 DEAD-box ATP-dependent 100.0 2.8E-33 6.1E-38 270.9 10.6 301 48-369 151-551 (620)
61 KOG0948 Nuclear exosomal RNA h 100.0 1.1E-32 2.5E-37 277.3 14.7 308 61-375 129-557 (1041)
62 TIGR00643 recG ATP-dependent D 100.0 4.4E-31 9.6E-36 282.3 25.3 288 44-357 224-564 (630)
63 KOG0951 RNA helicase BRR2, DEA 100.0 4.5E-31 9.8E-36 278.0 20.3 328 32-371 287-715 (1674)
64 COG4581 Superfamily II RNA hel 100.0 9.3E-31 2E-35 279.8 22.9 289 61-356 119-534 (1041)
65 TIGR01587 cas3_core CRISPR-ass 100.0 9.5E-31 2.1E-35 263.6 21.4 267 79-359 1-336 (358)
66 KOG0920 ATP-dependent RNA heli 100.0 7.9E-31 1.7E-35 277.5 21.5 378 68-461 181-653 (924)
67 KOG0334 RNA helicase [RNA proc 100.0 6.1E-31 1.3E-35 276.3 19.8 297 40-358 371-719 (997)
68 KOG0947 Cytoplasmic exosomal R 100.0 3.6E-31 7.8E-36 272.7 16.6 307 62-375 298-742 (1248)
69 KOG0344 ATP-dependent RNA heli 100.0 1.9E-30 4.2E-35 257.1 19.1 298 40-359 142-495 (593)
70 KOG4284 DEAD box protein [Tran 100.0 9.5E-31 2.1E-35 259.8 9.9 295 41-358 32-378 (980)
71 KOG0352 ATP-dependent DNA heli 100.0 5.8E-30 1.3E-34 243.4 14.0 305 43-369 5-373 (641)
72 PHA02558 uvsW UvsW helicase; P 100.0 5.1E-29 1.1E-33 260.0 22.2 279 59-357 112-453 (501)
73 KOG0327 Translation initiation 100.0 3.9E-29 8.6E-34 236.3 18.4 295 40-359 32-370 (397)
74 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.4E-28 3E-33 261.2 22.7 268 58-346 13-380 (844)
75 KOG0351 ATP-dependent DNA heli 100.0 3.6E-29 7.8E-34 269.4 17.8 333 57-408 260-644 (941)
76 KOG0337 ATP-dependent RNA heli 100.0 6.1E-29 1.3E-33 236.3 15.9 297 40-358 27-367 (529)
77 COG1111 MPH1 ERCC4-like helica 100.0 1.1E-27 2.4E-32 234.2 19.0 282 58-359 12-481 (542)
78 KOG0353 ATP-dependent DNA heli 100.0 8.4E-28 1.8E-32 225.6 14.5 316 12-357 56-465 (695)
79 TIGR03158 cas3_cyano CRISPR-as 99.9 2E-26 4.4E-31 230.3 21.7 256 66-341 2-357 (357)
80 PRK14701 reverse gyrase; Provi 99.9 3.4E-26 7.4E-31 260.5 18.5 277 57-346 76-446 (1638)
81 COG1205 Distinct helicase fami 99.9 6.8E-26 1.5E-30 245.8 19.6 284 44-346 58-412 (851)
82 TIGR00603 rad25 DNA repair hel 99.9 2.2E-25 4.8E-30 234.6 22.8 279 60-359 254-607 (732)
83 PRK09401 reverse gyrase; Revie 99.9 7.3E-26 1.6E-30 252.8 18.6 268 57-342 77-430 (1176)
84 PRK05580 primosome assembly pr 99.9 1E-24 2.2E-29 234.0 26.1 341 60-406 143-605 (679)
85 PRK13766 Hef nuclease; Provisi 99.9 6.1E-25 1.3E-29 242.4 23.2 105 238-358 364-478 (773)
86 KOG0354 DEAD-box like helicase 99.9 1.3E-24 2.9E-29 224.5 19.8 104 239-358 413-528 (746)
87 TIGR00595 priA primosomal prot 99.9 1.7E-24 3.7E-29 224.4 20.4 283 81-370 1-393 (505)
88 PRK12898 secA preprotein trans 99.9 4.4E-24 9.6E-29 222.4 22.8 109 240-365 474-592 (656)
89 PRK09200 preprotein translocas 99.9 5.1E-24 1.1E-28 226.5 23.4 108 239-363 428-545 (790)
90 COG1197 Mfd Transcription-repa 99.9 1.3E-24 2.9E-29 232.9 18.0 326 12-359 528-913 (1139)
91 COG1200 RecG RecG-like helicas 99.9 2.5E-24 5.5E-29 219.3 17.8 280 60-360 261-592 (677)
92 KOG0950 DNA polymerase theta/e 99.9 5.3E-24 1.2E-28 221.6 18.5 339 24-375 190-628 (1008)
93 TIGR01054 rgy reverse gyrase. 99.9 1.2E-23 2.7E-28 235.3 19.7 251 58-320 75-410 (1171)
94 TIGR03714 secA2 accessory Sec 99.9 4.1E-23 8.8E-28 217.6 22.3 103 239-359 424-537 (762)
95 PRK09694 helicase Cas3; Provis 99.9 3.7E-23 8E-28 223.8 20.7 272 59-346 284-665 (878)
96 TIGR00963 secA preprotein tran 99.9 3.2E-22 6.9E-27 209.6 23.3 104 239-359 405-517 (745)
97 COG4098 comFA Superfamily II D 99.9 4.2E-22 9.2E-27 185.6 20.2 294 46-360 89-417 (441)
98 COG1061 SSL2 DNA or RNA helica 99.9 3.5E-22 7.6E-27 204.7 21.2 265 58-343 33-376 (442)
99 KOG0349 Putative DEAD-box RNA 99.9 2.8E-23 6.1E-28 198.2 10.8 110 233-356 499-612 (725)
100 PRK04914 ATP-dependent helicas 99.9 2.6E-21 5.5E-26 210.9 25.1 112 238-359 492-605 (956)
101 KOG0329 ATP-dependent RNA heli 99.9 1.5E-22 3.2E-27 181.0 6.7 275 41-359 49-355 (387)
102 PRK11448 hsdR type I restricti 99.8 3.1E-19 6.8E-24 198.8 26.2 273 60-345 412-802 (1123)
103 COG1198 PriA Primosomal protei 99.8 3.6E-19 7.7E-24 187.6 22.6 342 59-406 196-659 (730)
104 KOG0949 Predicted helicase, DE 99.8 7.1E-20 1.5E-24 190.2 15.3 111 265-386 964-1074(1330)
105 COG1203 CRISPR-associated heli 99.8 1.2E-18 2.6E-23 189.1 18.3 283 63-359 197-550 (733)
106 PRK13104 secA preprotein trans 99.8 5.1E-18 1.1E-22 180.6 21.1 92 241-346 446-577 (896)
107 PRK12906 secA preprotein trans 99.8 2.5E-18 5.3E-23 182.1 18.3 102 239-357 440-551 (796)
108 PRK12904 preprotein translocas 99.8 8.3E-18 1.8E-22 178.8 20.0 93 240-346 431-563 (830)
109 PLN03142 Probable chromatin-re 99.7 1.4E-16 3E-21 174.7 18.3 108 241-359 489-599 (1033)
110 PRK13107 preprotein translocas 99.7 5.8E-16 1.3E-20 164.6 21.0 92 241-346 451-581 (908)
111 PRK12899 secA preprotein trans 99.7 2.9E-15 6.3E-20 159.6 22.5 112 57-170 85-228 (970)
112 cd00268 DEADc DEAD-box helicas 99.7 2.7E-16 5.9E-21 145.4 13.0 159 40-206 5-192 (203)
113 KOG0951 RNA helicase BRR2, DEA 99.7 2.1E-15 4.5E-20 160.8 17.5 302 59-373 1141-1509(1674)
114 COG0556 UvrB Helicase subunit 99.6 5E-14 1.1E-18 139.3 23.3 119 241-370 448-568 (663)
115 PF00271 Helicase_C: Helicase 99.6 7.2E-16 1.6E-20 119.2 8.5 76 257-344 2-78 (78)
116 COG1110 Reverse gyrase [DNA re 99.6 7.1E-15 1.5E-19 154.9 17.0 248 60-320 81-418 (1187)
117 TIGR00348 hsdR type I site-spe 99.6 1.2E-14 2.7E-19 156.3 19.3 268 77-357 263-649 (667)
118 PF00270 DEAD: DEAD/DEAH box h 99.6 1.3E-15 2.7E-20 136.4 8.0 136 63-200 1-163 (169)
119 COG4096 HsdR Type I site-speci 99.6 4.2E-14 9.2E-19 147.0 17.7 275 59-346 163-528 (875)
120 cd00079 HELICc Helicase superf 99.5 4.2E-14 9.2E-19 120.7 11.4 102 238-354 27-130 (131)
121 KOG0921 Dosage compensation co 99.5 3.8E-14 8.3E-19 146.8 8.4 343 76-434 392-853 (1282)
122 KOG1123 RNA polymerase II tran 99.5 2.1E-13 4.6E-18 133.4 12.5 283 59-359 300-653 (776)
123 PRK12900 secA preprotein trans 99.5 8.5E-13 1.9E-17 141.4 17.9 104 239-359 598-711 (1025)
124 smart00490 HELICc helicase sup 99.5 1.2E-13 2.6E-18 107.4 8.6 80 253-344 2-82 (82)
125 TIGR01407 dinG_rel DnaQ family 99.5 5.5E-12 1.2E-16 140.1 24.8 116 238-358 673-814 (850)
126 KOG0385 Chromatin remodeling c 99.5 1.7E-12 3.7E-17 133.1 18.9 111 238-359 485-599 (971)
127 TIGR00631 uvrb excinuclease AB 99.5 2.5E-13 5.4E-18 144.8 12.3 115 240-365 443-559 (655)
128 PRK05298 excinuclease ABC subu 99.4 1.2E-12 2.6E-17 140.6 15.6 109 239-358 446-556 (652)
129 PRK14873 primosome assembly pr 99.4 4.2E-12 9.2E-17 135.1 18.8 92 81-172 164-272 (665)
130 PRK12326 preprotein translocas 99.4 2.8E-11 6E-16 126.5 22.3 106 62-170 79-211 (764)
131 COG4889 Predicted helicase [Ge 99.4 6.6E-12 1.4E-16 130.2 13.4 81 265-354 499-583 (1518)
132 KOG0387 Transcription-coupled 99.3 9.2E-11 2E-15 121.2 20.3 111 238-358 544-657 (923)
133 KOG4150 Predicted ATP-dependen 99.3 7.8E-13 1.7E-17 131.2 4.7 275 58-346 283-630 (1034)
134 KOG0384 Chromodomain-helicase 99.3 2.6E-11 5.6E-16 130.3 16.4 111 238-359 697-811 (1373)
135 PRK13103 secA preprotein trans 99.3 9E-11 2E-15 125.6 19.2 91 80-170 98-215 (913)
136 smart00487 DEXDc DEAD-like hel 99.3 2.1E-11 4.5E-16 111.4 11.7 127 57-185 4-157 (201)
137 cd00046 DEXDc DEAD-like helica 99.2 4.9E-11 1.1E-15 102.4 10.1 95 78-172 1-118 (144)
138 KOG0390 DNA repair protein, SN 99.2 3E-10 6.4E-15 120.1 17.3 102 247-358 603-706 (776)
139 PF02399 Herpes_ori_bp: Origin 99.2 6.5E-10 1.4E-14 117.2 17.8 257 75-346 47-379 (824)
140 KOG1000 Chromatin remodeling p 99.2 1.1E-09 2.4E-14 107.7 17.6 111 239-359 492-604 (689)
141 PRK07246 bifunctional ATP-depe 99.2 9E-10 2E-14 121.1 19.2 113 238-358 646-783 (820)
142 KOG0389 SNF2 family DNA-depend 99.2 3.9E-09 8.5E-14 109.3 21.9 111 238-359 775-888 (941)
143 TIGR02562 cas3_yersinia CRISPR 99.1 2.1E-09 4.4E-14 116.4 15.6 93 243-346 761-882 (1110)
144 PF04851 ResIII: Type III rest 99.1 2.9E-10 6.2E-15 102.9 7.7 111 61-171 3-160 (184)
145 KOG0392 SNF2 family DNA-depend 99.1 3.2E-09 7E-14 114.3 15.8 109 239-358 1340-1453(1549)
146 PRK12903 secA preprotein trans 99.0 1.3E-08 2.7E-13 108.4 19.7 93 239-346 425-529 (925)
147 CHL00122 secA preprotein trans 99.0 2.6E-08 5.7E-13 106.6 20.7 106 62-170 77-209 (870)
148 PF07652 Flavi_DEAD: Flaviviru 98.9 3.2E-09 6.9E-14 89.4 5.6 93 76-170 3-108 (148)
149 KOG1002 Nucleotide excision re 98.8 4.1E-08 8.9E-13 96.8 12.7 87 263-359 662-749 (791)
150 PRK12902 secA preprotein trans 98.8 6.2E-07 1.3E-11 96.2 21.0 91 80-170 101-218 (939)
151 PRK12901 secA preprotein trans 98.5 6.9E-06 1.5E-10 89.3 18.5 94 239-346 627-731 (1112)
152 PF00176 SNF2_N: SNF2 family N 98.5 8.9E-07 1.9E-11 86.7 10.6 118 75-195 23-170 (299)
153 KOG0386 Chromatin remodeling c 98.5 8.6E-07 1.9E-11 94.5 10.5 107 240-357 727-836 (1157)
154 COG0610 Type I site-specific r 98.4 2.8E-06 6E-11 95.1 14.1 70 279-357 581-651 (962)
155 KOG4439 RNA polymerase II tran 98.4 7.1E-06 1.5E-10 84.6 14.9 91 255-356 763-855 (901)
156 KOG1802 RNA helicase nonsense 98.2 2E-05 4.3E-10 80.9 12.3 75 55-131 404-484 (935)
157 KOG0388 SNF2 family DNA-depend 98.2 7.7E-05 1.7E-09 77.2 16.4 106 241-358 1046-1153(1185)
158 KOG0952 DNA/RNA helicase MER3/ 98.1 8.9E-07 1.9E-11 94.9 2.3 151 60-212 926-1106(1230)
159 PF13086 AAA_11: AAA domain; P 98.1 1.2E-05 2.5E-10 75.6 8.9 60 62-123 2-75 (236)
160 PF13604 AAA_30: AAA domain; P 98.0 1.6E-05 3.4E-10 72.8 7.3 124 62-198 2-132 (196)
161 PRK08074 bifunctional ATP-depe 98.0 2.1E-05 4.5E-10 88.5 9.6 117 238-358 751-893 (928)
162 KOG1803 DNA helicase [Replicat 97.8 4.3E-05 9.3E-10 78.2 7.3 62 60-122 184-250 (649)
163 TIGR00376 DNA helicase, putati 97.8 0.00014 3.1E-09 78.2 11.5 67 60-127 156-227 (637)
164 PF13245 AAA_19: Part of AAA d 97.8 7.4E-05 1.6E-09 56.8 6.2 45 77-121 10-62 (76)
165 TIGR03117 cas_csf4 CRISPR-asso 97.7 5.5E-05 1.2E-09 80.4 7.1 118 238-358 469-616 (636)
166 PF09848 DUF2075: Uncharacteri 97.7 3.9E-05 8.5E-10 77.0 5.2 82 78-171 2-97 (352)
167 PF13307 Helicase_C_2: Helicas 97.6 0.00016 3.6E-09 64.2 6.8 117 236-358 6-150 (167)
168 KOG1016 Predicted DNA helicase 97.4 0.0061 1.3E-07 64.2 16.4 84 266-359 764-849 (1387)
169 PF02562 PhoH: PhoH-like prote 97.4 0.00018 4E-09 65.5 4.3 52 60-113 3-61 (205)
170 PRK08074 bifunctional ATP-depe 97.3 0.00066 1.4E-08 76.6 9.2 60 61-120 257-324 (928)
171 PF06862 DUF1253: Protein of u 97.3 0.021 4.7E-07 58.0 18.9 109 238-358 299-414 (442)
172 smart00489 DEXDc3 DEAD-like he 97.3 0.00051 1.1E-08 66.8 6.8 66 58-124 6-84 (289)
173 smart00488 DEXDc2 DEAD-like he 97.3 0.00051 1.1E-08 66.8 6.8 66 58-124 6-84 (289)
174 COG0653 SecA Preprotein transl 97.3 0.0073 1.6E-07 65.3 15.2 93 78-170 94-213 (822)
175 TIGR01448 recD_rel helicase, p 97.2 0.0012 2.6E-08 72.3 8.6 124 60-197 322-453 (720)
176 PF07517 SecA_DEAD: SecA DEAD- 97.1 0.00062 1.3E-08 64.7 4.9 109 59-171 75-211 (266)
177 KOG0391 SNF2 family DNA-depend 97.1 0.00074 1.6E-08 73.7 5.3 85 265-359 1302-1387(1958)
178 KOG0391 SNF2 family DNA-depend 97.0 0.0034 7.4E-08 68.8 10.2 108 61-170 615-750 (1958)
179 PRK06526 transposase; Provisio 97.0 0.0011 2.4E-08 63.0 5.6 72 76-170 97-172 (254)
180 PF13401 AAA_22: AAA domain; P 96.9 0.0014 3E-08 55.5 5.2 23 76-98 3-25 (131)
181 COG0553 HepA Superfamily II DN 96.9 0.0044 9.4E-08 70.2 10.8 108 241-359 713-822 (866)
182 COG1199 DinG Rad3-related DNA 96.9 0.0043 9.4E-08 67.8 10.1 115 238-359 478-618 (654)
183 PRK08181 transposase; Validate 96.9 0.0018 3.9E-08 62.0 6.0 74 76-171 105-181 (269)
184 KOG1805 DNA replication helica 96.9 0.0041 8.8E-08 67.3 8.8 113 59-172 667-811 (1100)
185 TIGR01447 recD exodeoxyribonuc 96.9 0.0047 1E-07 65.9 9.4 58 64-123 148-215 (586)
186 COG1484 DnaC DNA replication p 96.8 0.0028 6E-08 60.4 6.8 75 76-171 104-181 (254)
187 PRK15483 type III restriction- 96.8 0.007 1.5E-07 66.9 10.5 47 76-122 58-110 (986)
188 COG3973 Superfamily I DNA and 96.8 0.0023 4.9E-08 65.9 6.1 84 39-127 188-286 (747)
189 PRK11747 dinG ATP-dependent DN 96.8 0.0018 4E-08 70.7 5.9 113 240-358 535-674 (697)
190 PRK10536 hypothetical protein; 96.8 0.0015 3.2E-08 61.4 4.4 53 58-112 56-115 (262)
191 PRK08727 hypothetical protein; 96.8 0.0044 9.5E-08 58.3 7.5 63 77-171 41-107 (233)
192 PRK04296 thymidine kinase; Pro 96.7 0.00062 1.3E-08 61.9 1.5 33 77-109 2-38 (190)
193 PF01443 Viral_helicase1: Vira 96.7 0.0025 5.4E-08 59.9 5.3 94 80-197 1-98 (234)
194 PRK11747 dinG ATP-dependent DN 96.6 0.014 3.1E-07 63.9 11.3 59 61-119 25-96 (697)
195 smart00382 AAA ATPases associa 96.6 0.00088 1.9E-08 56.8 1.5 37 77-113 2-42 (148)
196 cd00009 AAA The AAA+ (ATPases 96.6 0.0041 8.9E-08 53.1 5.7 35 76-110 18-56 (151)
197 PRK12377 putative replication 96.6 0.0067 1.4E-07 57.4 7.4 73 77-170 101-176 (248)
198 PRK07952 DNA replication prote 96.6 0.0068 1.5E-07 57.2 7.4 75 78-172 100-177 (244)
199 PRK12723 flagellar biosynthesi 96.6 0.0053 1.1E-07 61.9 6.8 83 77-170 174-267 (388)
200 PRK06921 hypothetical protein; 96.5 0.0055 1.2E-07 58.8 6.6 69 76-168 116-188 (266)
201 COG1199 DinG Rad3-related DNA 96.5 0.0033 7.2E-08 68.7 5.7 66 57-122 11-84 (654)
202 smart00492 HELICc3 helicase su 96.5 0.017 3.7E-07 49.6 8.8 103 251-357 4-137 (141)
203 PF00580 UvrD-helicase: UvrD/R 96.5 0.0039 8.5E-08 61.3 5.5 48 76-123 12-67 (315)
204 PF05496 RuvB_N: Holliday junc 96.5 0.0054 1.2E-07 56.3 5.8 17 78-94 51-67 (233)
205 PRK10875 recD exonuclease V su 96.4 0.0088 1.9E-07 64.0 7.9 59 63-123 154-221 (615)
206 TIGR03420 DnaA_homol_Hda DnaA 96.3 0.0073 1.6E-07 56.4 5.8 20 76-95 37-56 (226)
207 TIGR00604 rad3 DNA repair heli 96.3 0.0068 1.5E-07 66.7 6.3 68 56-123 5-82 (705)
208 PRK08116 hypothetical protein; 96.3 0.011 2.5E-07 56.7 7.1 73 78-169 115-190 (268)
209 TIGR02768 TraA_Ti Ti-type conj 96.3 0.013 2.9E-07 64.5 8.4 98 60-171 351-453 (744)
210 TIGR03117 cas_csf4 CRISPR-asso 96.3 0.019 4.2E-07 61.3 9.3 48 75-122 14-67 (636)
211 PF13173 AAA_14: AAA domain 96.2 0.031 6.7E-07 47.1 8.8 32 76-107 1-35 (128)
212 cd01124 KaiC KaiC is a circadi 96.2 0.0042 9E-08 56.1 3.5 48 80-128 2-53 (187)
213 PRK08084 DNA replication initi 96.1 0.016 3.5E-07 54.5 7.3 18 77-94 45-62 (235)
214 PF05970 PIF1: PIF1-like helic 96.1 0.0086 1.9E-07 60.4 5.5 103 62-171 2-116 (364)
215 PRK06893 DNA replication initi 96.0 0.008 1.7E-07 56.4 4.5 32 77-108 39-74 (229)
216 PRK06835 DNA replication prote 95.9 0.016 3.4E-07 57.3 6.3 75 76-170 182-259 (329)
217 smart00491 HELICc2 helicase su 95.9 0.041 8.9E-07 47.3 8.2 103 251-357 4-138 (142)
218 TIGR03499 FlhF flagellar biosy 95.8 0.02 4.3E-07 55.6 6.4 80 76-166 193-281 (282)
219 PF12340 DUF3638: Protein of u 95.8 0.022 4.8E-07 52.6 6.3 63 60-123 22-91 (229)
220 COG2256 MGS1 ATPase related to 95.8 0.027 5.9E-07 55.7 7.2 92 77-198 48-141 (436)
221 PF05621 TniB: Bacterial TniB 95.8 0.0046 1E-07 59.3 1.7 85 77-171 61-159 (302)
222 PRK08939 primosomal protein Dn 95.8 0.022 4.8E-07 55.7 6.6 71 77-170 156-230 (306)
223 PRK08903 DnaA regulatory inact 95.7 0.02 4.4E-07 53.5 5.8 18 77-94 42-59 (227)
224 PRK13889 conjugal transfer rel 95.6 0.035 7.6E-07 62.4 8.2 97 60-170 345-446 (988)
225 PRK05642 DNA replication initi 95.6 0.053 1.2E-06 51.0 8.4 61 78-170 46-110 (234)
226 PRK14722 flhF flagellar biosyn 95.6 0.035 7.5E-07 55.6 7.2 83 76-169 136-227 (374)
227 PRK09183 transposase/IS protei 95.5 0.035 7.6E-07 53.1 6.8 73 75-170 100-177 (259)
228 PRK05703 flhF flagellar biosyn 95.5 0.099 2.1E-06 53.7 10.4 83 76-169 220-311 (424)
229 PRK13826 Dtr system oriT relax 95.5 0.066 1.4E-06 60.7 9.7 97 60-170 380-481 (1102)
230 COG1419 FlhF Flagellar GTP-bin 95.4 0.036 7.8E-07 55.3 6.5 82 76-168 202-292 (407)
231 PF07728 AAA_5: AAA domain (dy 95.3 0.023 5.1E-07 48.6 4.5 16 79-94 1-16 (139)
232 TIGR00604 rad3 DNA repair heli 95.3 0.055 1.2E-06 59.6 8.3 117 238-358 521-674 (705)
233 PRK14964 DNA polymerase III su 95.2 0.02 4.3E-07 59.5 4.3 18 77-94 35-52 (491)
234 PRK00149 dnaA chromosomal repl 95.2 0.034 7.3E-07 57.9 6.0 71 78-171 149-225 (450)
235 PRK11823 DNA repair protein Ra 95.2 0.048 1E-06 56.4 6.9 81 77-171 80-170 (446)
236 COG1219 ClpX ATP-dependent pro 95.1 0.02 4.2E-07 54.8 3.6 26 75-100 95-122 (408)
237 COG1875 NYN ribonuclease and A 95.1 0.026 5.7E-07 55.0 4.2 59 55-113 222-288 (436)
238 PF13871 Helicase_C_4: Helicas 95.0 0.061 1.3E-06 51.3 6.7 65 280-355 52-125 (278)
239 PF01695 IstB_IS21: IstB-like 95.0 0.052 1.1E-06 48.7 5.9 72 76-169 46-120 (178)
240 cd01121 Sms Sms (bacterial rad 95.0 0.061 1.3E-06 54.1 6.9 81 76-170 81-171 (372)
241 PRK00080 ruvB Holliday junctio 94.9 0.044 9.6E-07 54.4 5.7 21 77-97 51-71 (328)
242 PF13555 AAA_29: P-loop contai 94.9 0.034 7.4E-07 40.0 3.5 25 77-101 23-49 (62)
243 PRK14956 DNA polymerase III su 94.9 0.014 3E-07 60.1 2.0 19 78-96 41-59 (484)
244 TIGR00362 DnaA chromosomal rep 94.8 0.046 1E-06 56.1 5.7 71 78-171 137-213 (405)
245 PF00448 SRP54: SRP54-type pro 94.8 0.055 1.2E-06 49.4 5.5 86 78-170 2-96 (196)
246 TIGR03877 thermo_KaiC_1 KaiC d 94.8 0.049 1.1E-06 51.4 5.3 51 76-127 20-74 (237)
247 PTZ00293 thymidine kinase; Pro 94.7 0.064 1.4E-06 49.1 5.6 81 76-170 3-90 (211)
248 PRK14974 cell division protein 94.6 0.051 1.1E-06 53.8 5.2 87 77-170 140-235 (336)
249 PHA00729 NTP-binding motif con 94.6 0.15 3.2E-06 47.3 7.8 20 77-96 17-36 (226)
250 PRK14960 DNA polymerase III su 94.6 0.018 4E-07 61.2 2.1 19 77-95 37-55 (702)
251 COG2804 PulE Type II secretory 94.5 0.047 1E-06 55.9 4.8 34 63-96 243-277 (500)
252 KOG0989 Replication factor C, 94.5 0.069 1.5E-06 51.0 5.5 20 77-96 57-76 (346)
253 PRK07764 DNA polymerase III su 94.5 0.034 7.4E-07 61.6 4.0 19 77-95 37-55 (824)
254 PRK13851 type IV secretion sys 94.4 0.028 6.2E-07 55.8 2.9 39 75-113 160-201 (344)
255 COG2255 RuvB Holliday junction 94.4 0.077 1.7E-06 50.2 5.5 65 77-170 52-116 (332)
256 PF06745 KaiC: KaiC; InterPro 94.4 0.048 1E-06 51.0 4.3 51 76-127 18-73 (226)
257 cd01120 RecA-like_NTPases RecA 94.4 0.089 1.9E-06 45.8 5.9 31 80-110 2-36 (165)
258 KOG2340 Uncharacterized conser 94.4 0.35 7.6E-06 49.5 10.4 110 240-358 553-667 (698)
259 PF00265 TK: Thymidine kinase; 94.4 0.21 4.6E-06 44.6 8.2 33 78-110 2-38 (176)
260 PLN03025 replication factor C 94.4 0.24 5.2E-06 49.0 9.5 18 78-95 35-52 (319)
261 PRK13342 recombination factor 94.4 0.17 3.6E-06 52.1 8.5 21 77-97 36-56 (413)
262 PHA00350 putative assembly pro 94.3 0.42 9.1E-06 48.2 10.8 29 79-107 3-35 (399)
263 TIGR02688 conserved hypothetic 94.3 0.086 1.9E-06 53.2 5.8 21 75-95 207-227 (449)
264 PRK07003 DNA polymerase III su 94.2 0.028 6E-07 60.7 2.5 19 77-95 38-56 (830)
265 PRK04195 replication factor C 94.2 0.11 2.3E-06 54.7 6.8 24 77-100 39-62 (482)
266 PRK12422 chromosomal replicati 94.2 0.089 1.9E-06 54.4 6.0 71 78-171 142-216 (445)
267 TIGR03878 thermo_KaiC_2 KaiC d 94.2 0.14 3.1E-06 48.9 7.1 52 76-127 35-93 (259)
268 TIGR00635 ruvB Holliday juncti 94.2 0.091 2E-06 51.6 5.9 20 77-96 30-49 (305)
269 PRK11889 flhF flagellar biosyn 94.2 0.12 2.7E-06 51.8 6.6 83 77-170 241-333 (436)
270 PF13872 AAA_34: P-loop contai 94.0 0.078 1.7E-06 50.9 4.8 97 76-172 61-187 (303)
271 PHA02544 44 clamp loader, smal 93.9 0.19 4.2E-06 49.5 7.8 33 78-110 44-77 (316)
272 PHA03368 DNA packaging termina 93.9 0.95 2.1E-05 48.3 12.8 121 43-172 229-367 (738)
273 PF00308 Bac_DnaA: Bacterial d 93.9 0.14 3.1E-06 47.5 6.4 71 78-171 35-111 (219)
274 PRK06645 DNA polymerase III su 93.9 0.04 8.7E-07 57.6 2.9 17 78-94 44-60 (507)
275 PRK14958 DNA polymerase III su 93.9 0.036 7.9E-07 58.2 2.5 18 77-94 38-55 (509)
276 PRK14712 conjugal transfer nic 93.8 0.21 4.5E-06 58.8 8.6 102 60-171 834-944 (1623)
277 KOG1015 Transcription regulato 93.8 0.18 3.9E-06 55.0 7.4 83 265-357 1190-1275(1567)
278 PRK13709 conjugal transfer nic 93.8 0.22 4.7E-06 59.4 8.8 101 60-170 966-1075(1747)
279 KOG0741 AAA+-type ATPase [Post 93.7 0.11 2.3E-06 53.3 5.3 55 156-211 323-391 (744)
280 PRK11054 helD DNA helicase IV; 93.7 0.12 2.6E-06 56.4 6.1 60 60-123 195-263 (684)
281 TIGR02782 TrbB_P P-type conjug 93.7 0.093 2E-06 51.3 4.9 39 76-114 131-175 (299)
282 COG1618 Predicted nucleotide k 93.7 0.26 5.5E-06 42.7 6.8 18 78-95 6-23 (179)
283 PRK12323 DNA polymerase III su 93.6 0.043 9.4E-07 58.3 2.5 18 77-94 38-55 (700)
284 KOG1132 Helicase of the DEAD s 93.6 0.2 4.3E-06 54.3 7.4 65 290-356 624-720 (945)
285 TIGR01075 uvrD DNA helicase II 93.6 0.088 1.9E-06 58.2 5.1 61 60-124 3-72 (715)
286 PRK13833 conjugal transfer pro 93.6 0.073 1.6E-06 52.3 3.9 39 75-113 142-186 (323)
287 COG4962 CpaF Flp pilus assembl 93.5 0.078 1.7E-06 51.7 3.9 59 58-116 154-215 (355)
288 TIGR02760 TraI_TIGR conjugativ 93.5 0.22 4.8E-06 60.6 8.5 99 60-170 1018-1125(1960)
289 PRK14952 DNA polymerase III su 93.5 0.1 2.2E-06 55.6 5.1 18 78-95 36-53 (584)
290 PRK14087 dnaA chromosomal repl 93.4 0.15 3.2E-06 52.9 6.1 73 78-171 142-220 (450)
291 PRK08691 DNA polymerase III su 93.4 0.056 1.2E-06 58.0 3.0 19 77-95 38-56 (709)
292 PRK14961 DNA polymerase III su 93.4 0.054 1.2E-06 54.6 2.8 19 78-96 39-57 (363)
293 PRK14949 DNA polymerase III su 93.4 0.039 8.5E-07 60.6 1.8 18 78-95 39-56 (944)
294 PRK12727 flagellar biosynthesi 93.3 0.15 3.3E-06 53.1 5.9 83 76-169 349-440 (559)
295 PRK10919 ATP-dependent DNA hel 93.3 0.13 2.8E-06 56.3 5.7 58 62-123 3-69 (672)
296 PF02534 T4SS-DNA_transf: Type 93.3 0.094 2E-06 54.9 4.5 54 78-131 45-100 (469)
297 PRK07994 DNA polymerase III su 93.3 0.03 6.5E-07 60.0 0.7 17 78-94 39-55 (647)
298 PRK11773 uvrD DNA-dependent he 93.3 0.1 2.2E-06 57.8 4.9 61 60-124 8-77 (721)
299 PRK14965 DNA polymerase III su 93.2 0.057 1.2E-06 57.8 2.7 19 77-95 38-56 (576)
300 COG1702 PhoH Phosphate starvat 93.2 0.14 3E-06 49.8 5.1 67 58-136 125-197 (348)
301 cd01126 TraG_VirD4 The TraG/Tr 93.1 0.083 1.8E-06 53.8 3.6 54 79-132 1-56 (384)
302 COG0466 Lon ATP-dependent Lon 93.1 0.12 2.7E-06 54.8 4.9 87 75-184 348-443 (782)
303 PRK00771 signal recognition pa 93.1 0.15 3.3E-06 52.3 5.5 86 77-169 95-187 (437)
304 PRK04328 hypothetical protein; 93.1 0.17 3.6E-06 48.1 5.4 51 76-127 22-76 (249)
305 cd00544 CobU Adenosylcobinamid 93.1 0.12 2.7E-06 45.8 4.2 44 80-123 2-46 (169)
306 PRK05973 replicative DNA helic 93.1 0.14 3.1E-06 48.0 4.8 51 76-127 63-117 (237)
307 PRK13341 recombination factor 93.0 0.39 8.4E-06 52.7 8.8 19 77-95 52-70 (725)
308 TIGR00416 sms DNA repair prote 92.9 0.23 5E-06 51.5 6.6 82 76-170 93-183 (454)
309 PF00437 T2SE: Type II/IV secr 92.9 0.066 1.4E-06 51.6 2.4 37 76-112 126-166 (270)
310 TIGR02760 TraI_TIGR conjugativ 92.9 0.15 3.2E-06 62.1 5.8 60 61-120 429-493 (1960)
311 PRK13900 type IV secretion sys 92.9 0.068 1.5E-06 53.0 2.5 39 75-113 158-199 (332)
312 TIGR00631 uvrb excinuclease AB 92.9 0.23 5E-06 53.9 6.8 46 79-124 31-77 (655)
313 PRK14969 DNA polymerase III su 92.8 0.068 1.5E-06 56.5 2.5 17 78-94 39-55 (527)
314 PRK08533 flagellar accessory p 92.8 0.2 4.4E-06 46.9 5.4 50 76-126 23-76 (230)
315 cd01129 PulE-GspE PulE/GspE Th 92.7 0.16 3.4E-06 48.8 4.7 27 68-94 71-97 (264)
316 PHA03333 putative ATPase subun 92.7 1.9 4.1E-05 46.3 12.9 62 62-123 172-238 (752)
317 PRK05563 DNA polymerase III su 92.7 0.11 2.3E-06 55.5 3.9 18 77-94 38-55 (559)
318 cd01130 VirB11-like_ATPase Typ 92.7 0.14 3.1E-06 46.3 4.1 20 75-94 23-42 (186)
319 PRK14723 flhF flagellar biosyn 92.7 0.22 4.7E-06 54.4 6.1 53 77-129 185-246 (767)
320 PRK14088 dnaA chromosomal repl 92.7 0.23 5E-06 51.4 6.2 71 78-171 131-208 (440)
321 PRK10436 hypothetical protein; 92.6 0.15 3.2E-06 52.9 4.6 27 68-94 209-235 (462)
322 COG0467 RAD55 RecA-superfamily 92.6 0.2 4.4E-06 47.9 5.3 53 76-128 22-77 (260)
323 PRK14729 miaA tRNA delta(2)-is 92.6 0.14 3.1E-06 49.7 4.2 24 77-100 4-27 (300)
324 PRK14962 DNA polymerase III su 92.5 0.05 1.1E-06 56.6 1.1 18 78-95 37-54 (472)
325 PRK14086 dnaA chromosomal repl 92.5 0.26 5.7E-06 52.4 6.3 71 78-171 315-391 (617)
326 TIGR02655 circ_KaiC circadian 92.4 0.19 4.2E-06 52.7 5.3 51 76-127 262-316 (484)
327 PRK13897 type IV secretion sys 92.4 0.19 4.1E-06 53.8 5.2 56 76-131 157-214 (606)
328 PRK06995 flhF flagellar biosyn 92.4 0.33 7.1E-06 50.4 6.8 81 76-167 255-344 (484)
329 PRK10865 protein disaggregatio 92.3 0.78 1.7E-05 51.7 10.2 20 75-94 197-216 (857)
330 PRK09111 DNA polymerase III su 92.2 0.096 2.1E-06 56.1 2.8 19 77-95 46-64 (598)
331 KOG0742 AAA+-type ATPase [Post 92.2 0.045 9.8E-07 54.1 0.3 71 77-171 384-457 (630)
332 KOG0745 Putative ATP-dependent 92.1 0.14 3.1E-06 51.2 3.6 30 75-104 224-255 (564)
333 TIGR00595 priA primosomal prot 92.1 0.68 1.5E-05 48.8 9.0 76 239-317 25-102 (505)
334 PRK14948 DNA polymerase III su 92.0 0.11 2.3E-06 56.1 2.9 19 77-95 38-56 (620)
335 COG2805 PilT Tfp pilus assembl 92.0 0.16 3.5E-06 48.5 3.7 20 75-94 123-142 (353)
336 PRK14953 DNA polymerase III su 92.0 0.12 2.6E-06 54.0 3.2 19 153-171 115-133 (486)
337 PRK07133 DNA polymerase III su 92.0 0.14 3.1E-06 55.5 3.7 18 77-94 40-57 (725)
338 KOG0058 Peptide exporter, ABC 91.9 0.27 5.9E-06 52.4 5.6 44 76-119 493-541 (716)
339 PRK14957 DNA polymerase III su 91.9 0.097 2.1E-06 55.2 2.4 18 78-95 39-56 (546)
340 PF13207 AAA_17: AAA domain; P 91.9 0.12 2.6E-06 42.8 2.5 16 79-94 1-16 (121)
341 PRK14951 DNA polymerase III su 91.9 0.1 2.3E-06 55.8 2.5 18 78-95 39-56 (618)
342 PRK14963 DNA polymerase III su 91.8 0.11 2.3E-06 54.6 2.5 17 78-94 37-53 (504)
343 PRK05800 cobU adenosylcobinami 91.7 0.21 4.5E-06 44.4 3.9 44 79-122 3-47 (170)
344 TIGR02655 circ_KaiC circadian 91.6 0.31 6.7E-06 51.2 5.8 52 76-128 20-76 (484)
345 COG1435 Tdk Thymidine kinase [ 91.6 0.23 4.9E-06 44.5 4.0 23 77-99 4-26 (201)
346 PF02456 Adeno_IVa2: Adenoviru 91.5 0.2 4.3E-06 48.0 3.7 37 76-113 86-129 (369)
347 PRK14950 DNA polymerase III su 91.5 0.14 3.1E-06 55.0 3.1 19 77-95 38-56 (585)
348 PRK14955 DNA polymerase III su 91.5 0.18 3.9E-06 51.5 3.7 18 78-95 39-56 (397)
349 PRK07940 DNA polymerase III su 91.5 0.43 9.3E-06 48.5 6.4 19 77-95 36-54 (394)
350 PF05127 Helicase_RecD: Helica 91.5 0.045 9.7E-07 48.7 -0.6 90 81-170 1-103 (177)
351 PF12846 AAA_10: AAA-like doma 91.5 0.25 5.4E-06 48.0 4.6 39 77-115 1-43 (304)
352 COG2812 DnaX DNA polymerase II 91.4 0.053 1.2E-06 56.3 -0.2 19 153-171 115-133 (515)
353 PF01745 IPT: Isopentenyl tran 91.4 0.21 4.6E-06 45.4 3.6 30 78-107 2-31 (233)
354 PRK13894 conjugal transfer ATP 91.3 0.21 4.5E-06 49.2 3.9 20 75-94 146-165 (319)
355 PRK08451 DNA polymerase III su 91.3 0.18 3.9E-06 53.0 3.6 18 78-95 37-54 (535)
356 KOG1015 Transcription regulato 91.3 0.35 7.5E-06 52.9 5.6 118 76-196 695-859 (1567)
357 PRK05580 primosome assembly pr 91.3 0.89 1.9E-05 49.8 9.0 75 240-317 191-267 (679)
358 PRK14959 DNA polymerase III su 91.3 0.13 2.9E-06 54.8 2.5 18 78-95 39-56 (624)
359 COG1444 Predicted P-loop ATPas 91.2 0.98 2.1E-05 49.1 8.9 101 68-170 222-336 (758)
360 PLN02165 adenylate isopentenyl 91.2 0.25 5.4E-06 48.6 4.2 22 75-96 41-62 (334)
361 PRK06067 flagellar accessory p 91.1 0.34 7.3E-06 45.5 5.0 52 76-128 24-79 (234)
362 TIGR03880 KaiC_arch_3 KaiC dom 91.1 0.37 7.9E-06 44.9 5.2 51 76-127 15-69 (224)
363 TIGR01073 pcrA ATP-dependent D 91.1 0.28 6.2E-06 54.3 5.1 61 60-124 3-72 (726)
364 COG4128 Zot Zonula occludens t 91.1 0.61 1.3E-05 44.3 6.4 89 79-172 3-96 (398)
365 TIGR02785 addA_Gpos recombinat 91.1 0.41 8.9E-06 56.1 6.6 58 62-123 2-67 (1232)
366 PRK13850 type IV secretion sys 91.1 0.27 5.7E-06 53.4 4.6 57 75-131 137-195 (670)
367 TIGR01074 rep ATP-dependent DN 91.0 0.31 6.8E-06 53.4 5.2 58 62-123 2-68 (664)
368 PRK05896 DNA polymerase III su 90.9 0.17 3.7E-06 53.7 2.9 19 77-95 38-56 (605)
369 TIGR02788 VirB11 P-type DNA tr 90.9 0.18 3.9E-06 49.6 2.9 19 76-94 143-161 (308)
370 TIGR02538 type_IV_pilB type IV 90.8 0.28 6.2E-06 52.4 4.5 27 68-94 307-333 (564)
371 TIGR00678 holB DNA polymerase 90.7 0.94 2E-05 40.8 7.3 18 77-94 14-31 (188)
372 PF13238 AAA_18: AAA domain; P 90.6 0.18 3.8E-06 42.1 2.3 15 80-94 1-15 (129)
373 TIGR03881 KaiC_arch_4 KaiC dom 90.6 0.48 1E-05 44.2 5.5 51 76-127 19-73 (229)
374 TIGR02237 recomb_radB DNA repa 90.6 0.37 8E-06 44.3 4.6 34 76-109 11-48 (209)
375 cd01131 PilT Pilus retraction 90.3 0.24 5.1E-06 45.3 3.0 16 79-94 3-18 (198)
376 TIGR02533 type_II_gspE general 90.2 0.28 6E-06 51.3 3.8 20 75-94 240-259 (486)
377 TIGR02012 tigrfam_recA protein 90.1 0.59 1.3E-05 45.9 5.7 79 76-170 54-146 (321)
378 TIGR01547 phage_term_2 phage t 90.1 1.1 2.4E-05 45.8 8.0 94 78-171 2-115 (396)
379 COG0470 HolB ATPase involved i 90.0 0.5 1.1E-05 46.6 5.4 17 79-95 26-42 (325)
380 PRK13822 conjugal transfer cou 90.0 0.52 1.1E-05 50.9 5.7 56 76-131 223-280 (641)
381 PRK00091 miaA tRNA delta(2)-is 89.9 0.37 8.1E-06 47.1 4.2 21 77-97 4-24 (307)
382 PF13671 AAA_33: AAA domain; P 89.9 0.71 1.5E-05 39.3 5.6 24 79-102 1-24 (143)
383 TIGR01241 FtsH_fam ATP-depende 89.9 0.77 1.7E-05 48.4 6.9 19 77-95 88-106 (495)
384 PRK12726 flagellar biosynthesi 89.9 0.82 1.8E-05 45.8 6.5 53 76-128 205-264 (407)
385 cd00984 DnaB_C DnaB helicase C 89.8 0.86 1.9E-05 42.9 6.5 42 76-117 12-61 (242)
386 PRK14954 DNA polymerase III su 89.7 0.17 3.7E-06 54.3 1.8 18 78-95 39-56 (620)
387 PF12775 AAA_7: P-loop contain 89.7 0.33 7.2E-06 46.7 3.6 26 75-100 31-56 (272)
388 TIGR02639 ClpA ATP-dependent C 89.6 0.44 9.5E-06 52.8 5.0 16 79-94 486-501 (731)
389 PRK12724 flagellar biosynthesi 89.6 0.84 1.8E-05 46.4 6.5 52 77-128 223-282 (432)
390 TIGR03346 chaperone_ClpB ATP-d 89.6 2.2 4.7E-05 48.2 10.5 19 76-94 193-211 (852)
391 COG0630 VirB11 Type IV secreto 89.5 0.34 7.3E-06 47.6 3.5 54 60-113 126-182 (312)
392 cd01394 radB RadB. The archaea 89.5 0.5 1.1E-05 43.8 4.6 32 76-107 18-53 (218)
393 cd00983 recA RecA is a bacter 89.5 0.69 1.5E-05 45.5 5.6 49 76-127 54-106 (325)
394 TIGR02767 TraG-Ti Ti-type conj 89.4 0.71 1.5E-05 49.7 6.1 55 77-131 211-268 (623)
395 COG1221 PspF Transcriptional r 89.4 0.48 1E-05 47.8 4.6 85 75-171 99-187 (403)
396 PRK05298 excinuclease ABC subu 89.4 0.77 1.7E-05 50.1 6.5 65 60-124 11-80 (652)
397 PRK10917 ATP-dependent DNA hel 89.3 1.6 3.4E-05 48.0 9.0 78 241-320 312-395 (681)
398 PF13177 DNA_pol3_delta2: DNA 89.3 1.5 3.2E-05 38.6 7.2 22 77-98 19-40 (162)
399 PRK14530 adenylate kinase; Pro 89.3 0.29 6.3E-06 45.3 2.8 21 76-96 2-22 (215)
400 PRK11034 clpA ATP-dependent Cl 89.3 1.7 3.7E-05 48.0 9.1 20 75-94 205-224 (758)
401 cd01127 TrwB Bacterial conjuga 89.2 0.28 6.1E-06 50.3 2.9 42 75-116 40-85 (410)
402 COG0553 HepA Superfamily II DN 89.2 0.42 9.2E-06 54.1 4.6 112 60-172 337-487 (866)
403 PRK14971 DNA polymerase III su 89.2 0.4 8.6E-06 51.7 4.1 20 152-171 116-135 (614)
404 TIGR02524 dot_icm_DotB Dot/Icm 89.1 0.36 7.7E-06 48.4 3.4 20 75-94 132-151 (358)
405 COG1110 Reverse gyrase [DNA re 89.1 1.1 2.5E-05 49.6 7.3 79 238-318 124-213 (1187)
406 PRK09361 radB DNA repair and r 88.9 0.6 1.3E-05 43.5 4.7 32 76-107 22-57 (225)
407 PRK13764 ATPase; Provisional 88.9 0.47 1E-05 50.6 4.3 38 76-113 256-297 (602)
408 PRK14873 primosome assembly pr 88.8 1.3 2.8E-05 48.2 7.7 72 239-315 188-264 (665)
409 PF00004 AAA: ATPase family as 88.8 0.3 6.5E-06 40.8 2.4 17 80-96 1-17 (132)
410 KOG1969 DNA replication checkp 88.8 0.88 1.9E-05 48.7 6.0 21 76-96 325-345 (877)
411 COG3587 Restriction endonuclea 88.7 0.25 5.4E-06 53.4 2.0 46 75-120 72-123 (985)
412 KOG2373 Predicted mitochondria 88.7 0.65 1.4E-05 45.2 4.6 47 76-122 272-325 (514)
413 PRK06647 DNA polymerase III su 88.6 0.48 1E-05 50.5 4.1 19 77-95 38-56 (563)
414 TIGR02397 dnaX_nterm DNA polym 88.6 0.5 1.1E-05 47.4 4.2 18 77-94 36-53 (355)
415 PRK09354 recA recombinase A; P 88.5 0.8 1.7E-05 45.5 5.4 78 77-170 60-151 (349)
416 TIGR03263 guanyl_kin guanylate 88.5 0.35 7.6E-06 43.2 2.7 19 77-95 1-19 (180)
417 PF13481 AAA_25: AAA domain; P 88.5 0.93 2E-05 40.9 5.5 47 76-123 31-91 (193)
418 PRK10867 signal recognition pa 88.4 1.3 2.8E-05 45.5 7.0 52 77-128 100-159 (433)
419 TIGR01420 pilT_fam pilus retra 88.3 0.49 1.1E-05 47.3 3.8 20 75-94 120-139 (343)
420 cd02023 UMPK Uridine monophosp 88.3 0.63 1.4E-05 42.4 4.3 20 80-99 2-23 (198)
421 PRK05480 uridine/cytidine kina 88.3 0.69 1.5E-05 42.5 4.6 19 76-94 5-23 (209)
422 PRK08233 hypothetical protein; 88.2 0.38 8.1E-06 43.0 2.7 19 77-95 3-21 (182)
423 KOG2004 Mitochondrial ATP-depe 88.2 0.53 1.1E-05 50.2 4.0 88 76-186 437-533 (906)
424 KOG0741 AAA+-type ATPase [Post 88.2 1.4 3E-05 45.5 6.8 104 78-203 539-655 (744)
425 PRK08118 topology modulation p 88.1 0.37 8E-06 42.7 2.5 17 78-94 2-18 (167)
426 KOG2028 ATPase related to the 88.1 0.7 1.5E-05 45.4 4.4 94 78-200 163-261 (554)
427 PRK14721 flhF flagellar biosyn 87.9 1.1 2.5E-05 45.7 6.2 80 76-166 190-278 (420)
428 TIGR00064 ftsY signal recognit 87.9 1.1 2.4E-05 43.1 5.9 87 77-170 72-167 (272)
429 COG0324 MiaA tRNA delta(2)-iso 87.8 0.65 1.4E-05 45.1 4.2 23 77-99 3-25 (308)
430 PRK00300 gmk guanylate kinase; 87.8 0.42 9.1E-06 43.8 2.8 19 76-94 4-22 (205)
431 TIGR02236 recomb_radA DNA repa 87.8 0.69 1.5E-05 45.5 4.5 33 76-108 94-136 (310)
432 TIGR00643 recG ATP-dependent D 87.8 2.2 4.8E-05 46.5 8.7 80 239-320 284-369 (630)
433 TIGR00763 lon ATP-dependent pr 87.8 0.82 1.8E-05 51.0 5.5 19 76-94 346-364 (775)
434 PRK10416 signal recognition pa 87.8 1.2 2.5E-05 44.0 6.0 88 76-170 113-209 (318)
435 TIGR02639 ClpA ATP-dependent C 87.6 3 6.6E-05 46.3 9.8 19 76-94 202-220 (731)
436 TIGR03743 SXT_TraD conjugative 87.6 1.2 2.6E-05 48.2 6.5 52 76-127 175-232 (634)
437 cd00227 CPT Chloramphenicol (C 87.6 0.45 9.8E-06 42.4 2.8 19 77-95 2-20 (175)
438 PRK11034 clpA ATP-dependent Cl 87.6 0.54 1.2E-05 51.9 3.9 17 78-94 489-505 (758)
439 PF07724 AAA_2: AAA domain (Cd 87.5 0.87 1.9E-05 40.5 4.6 17 78-94 4-20 (171)
440 PRK05707 DNA polymerase III su 87.5 1.7 3.7E-05 43.1 7.0 19 77-95 22-40 (328)
441 COG0552 FtsY Signal recognitio 87.5 0.95 2.1E-05 44.1 5.0 91 77-172 139-236 (340)
442 TIGR00235 udk uridine kinase. 87.5 0.67 1.5E-05 42.6 4.0 19 76-94 5-23 (207)
443 COG4185 Uncharacterized protei 87.5 0.31 6.6E-06 42.1 1.5 40 78-117 3-42 (187)
444 PRK14970 DNA polymerase III su 87.4 0.31 6.7E-06 49.3 1.8 18 78-95 40-57 (367)
445 PRK07261 topology modulation p 87.3 0.44 9.5E-06 42.4 2.5 18 79-96 2-19 (171)
446 TIGR02525 plasmid_TraJ plasmid 87.3 0.54 1.2E-05 47.3 3.4 19 76-94 148-166 (372)
447 cd01122 GP4d_helicase GP4d_hel 87.2 1.8 3.8E-05 41.6 6.9 32 76-107 29-65 (271)
448 PF09439 SRPRB: Signal recogni 87.2 0.62 1.4E-05 41.7 3.4 24 77-100 3-26 (181)
449 cd01918 HprK_C HprK/P, the bif 87.1 0.86 1.9E-05 39.4 4.1 27 75-101 12-38 (149)
450 PF10412 TrwB_AAD_bind: Type I 87.1 0.64 1.4E-05 47.3 3.9 44 75-118 13-60 (386)
451 PRK10078 ribose 1,5-bisphospho 87.1 0.47 1E-05 42.8 2.7 18 77-94 2-19 (186)
452 PF01935 DUF87: Domain of unkn 87.0 0.78 1.7E-05 42.8 4.2 18 77-94 23-40 (229)
453 cd03115 SRP The signal recogni 87.0 1.3 2.8E-05 39.3 5.4 29 79-107 2-34 (173)
454 PRK10787 DNA-binding ATP-depen 87.0 1.3 2.8E-05 49.3 6.4 19 76-94 348-366 (784)
455 PRK00131 aroK shikimate kinase 86.9 0.52 1.1E-05 41.7 2.8 20 76-95 3-22 (175)
456 PRK06305 DNA polymerase III su 86.9 0.4 8.7E-06 49.8 2.3 19 77-95 39-57 (451)
457 PF05876 Terminase_GpA: Phage 86.8 1.9 4.1E-05 46.1 7.3 94 77-170 33-147 (557)
458 TIGR00174 miaA tRNA isopenteny 86.7 0.81 1.7E-05 44.2 4.1 21 80-100 2-22 (287)
459 COG0563 Adk Adenylate kinase a 86.7 0.49 1.1E-05 42.4 2.5 17 79-95 2-18 (178)
460 CHL00095 clpC Clp protease ATP 86.7 0.91 2E-05 51.0 5.1 19 76-94 199-217 (821)
461 TIGR02322 phosphon_PhnN phosph 86.7 0.51 1.1E-05 42.2 2.6 17 78-94 2-18 (179)
462 cd00071 GMPK Guanosine monopho 86.6 0.61 1.3E-05 39.8 2.9 17 80-96 2-18 (137)
463 TIGR00959 ffh signal recogniti 86.5 2 4.3E-05 44.2 7.0 87 77-170 99-195 (428)
464 PHA02533 17 large terminase pr 86.5 4.5 9.8E-05 42.9 9.9 108 61-171 59-183 (534)
465 PRK08769 DNA polymerase III su 86.5 3.7 8E-05 40.5 8.6 18 78-95 27-44 (319)
466 COG1223 Predicted ATPase (AAA+ 86.5 1 2.2E-05 42.3 4.3 38 77-114 151-188 (368)
467 PRK05541 adenylylsulfate kinas 86.4 1.2 2.6E-05 39.7 4.9 19 76-94 6-24 (176)
468 TIGR03345 VI_ClpV1 type VI sec 86.4 1.2 2.7E-05 50.0 6.0 19 76-94 207-225 (852)
469 PLN02748 tRNA dimethylallyltra 86.4 0.85 1.8E-05 47.2 4.3 24 75-98 20-43 (468)
470 PRK14737 gmk guanylate kinase; 86.3 0.79 1.7E-05 41.4 3.6 21 76-96 3-23 (186)
471 PRK04301 radA DNA repair and r 86.3 0.91 2E-05 44.8 4.4 33 76-108 101-143 (317)
472 CHL00095 clpC Clp protease ATP 86.3 1 2.2E-05 50.6 5.2 16 79-94 541-556 (821)
473 PRK06731 flhF flagellar biosyn 86.3 1.9 4.2E-05 41.3 6.4 86 76-169 74-166 (270)
474 PHA00012 I assembly protein 86.2 6.4 0.00014 38.5 9.8 20 79-98 3-22 (361)
475 TIGR03345 VI_ClpV1 type VI sec 86.2 1.1 2.4E-05 50.4 5.4 31 79-109 598-631 (852)
476 TIGR02881 spore_V_K stage V sp 86.2 0.49 1.1E-05 45.3 2.4 18 77-94 42-59 (261)
477 PRK06762 hypothetical protein; 86.1 1.4 3E-05 38.7 5.1 19 78-96 3-21 (166)
478 PRK09376 rho transcription ter 86.1 2 4.3E-05 43.3 6.5 20 75-94 167-186 (416)
479 PRK09302 circadian clock prote 86.1 1.3 2.9E-05 46.9 5.8 51 77-128 273-327 (509)
480 TIGR02640 gas_vesic_GvpN gas v 86.0 0.92 2E-05 43.4 4.1 20 76-95 20-39 (262)
481 COG1126 GlnQ ABC-type polar am 85.9 0.57 1.2E-05 42.8 2.4 20 75-94 26-45 (240)
482 TIGR03819 heli_sec_ATPase heli 85.8 0.61 1.3E-05 46.5 2.8 39 75-113 176-217 (340)
483 PLN02840 tRNA dimethylallyltra 85.8 0.89 1.9E-05 46.2 4.0 22 75-96 19-40 (421)
484 TIGR02880 cbbX_cfxQ probable R 85.7 0.59 1.3E-05 45.4 2.7 18 77-94 58-75 (284)
485 PRK14531 adenylate kinase; Pro 85.7 0.61 1.3E-05 42.0 2.6 20 78-97 3-22 (183)
486 KOG2228 Origin recognition com 85.7 4 8.8E-05 39.9 8.1 19 76-94 48-66 (408)
487 cd00820 PEPCK_HprK Phosphoenol 85.5 1.3 2.8E-05 35.9 4.1 21 76-96 14-34 (107)
488 PRK07471 DNA polymerase III su 85.4 3.5 7.6E-05 41.5 8.1 19 77-95 41-59 (365)
489 PRK13876 conjugal transfer cou 85.4 1.4 3E-05 47.9 5.5 54 76-130 143-198 (663)
490 COG1074 RecB ATP-dependent exo 85.2 1.2 2.7E-05 51.7 5.4 48 76-123 15-71 (1139)
491 KOG1001 Helicase-like transcri 85.2 6.2 0.00013 43.0 10.3 125 81-208 156-303 (674)
492 COG1136 SalX ABC-type antimicr 85.1 0.65 1.4E-05 43.0 2.5 19 75-93 29-47 (226)
493 cd01123 Rad51_DMC1_radA Rad51_ 85.0 1.3 2.7E-05 41.5 4.5 33 76-108 18-60 (235)
494 TIGR01313 therm_gnt_kin carboh 84.9 0.97 2.1E-05 39.6 3.5 16 80-95 1-16 (163)
495 TIGR01243 CDC48 AAA family ATP 84.9 2.4 5.2E-05 47.1 7.3 61 77-169 487-558 (733)
496 PRK09825 idnK D-gluconate kina 84.9 0.77 1.7E-05 41.0 2.8 19 76-94 2-20 (176)
497 TIGR02759 TraD_Ftype type IV c 84.9 0.87 1.9E-05 48.6 3.7 36 75-110 174-213 (566)
498 CHL00181 cbbX CbbX; Provisiona 84.7 0.71 1.5E-05 44.9 2.7 18 77-94 59-76 (287)
499 PRK14527 adenylate kinase; Pro 84.5 0.77 1.7E-05 41.6 2.7 22 76-97 5-26 (191)
500 PF01078 Mg_chelatase: Magnesi 84.5 0.85 1.8E-05 41.6 2.9 25 75-99 20-46 (206)
No 1
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=4.7e-76 Score=573.00 Aligned_cols=433 Identities=49% Similarity=0.826 Sum_probs=419.1
Q ss_pred cCCCCCchhccchHHHhcCCceEEEEccCCccHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeec
Q 010836 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE 137 (499)
Q Consensus 58 ~~~~l~~~q~~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~ 137 (499)
.++++|.+.+|||.+|+++++.++++|||+||||+-|++.+...++++|+-|.|.||.++++++++.|++|.++||+++.
T Consensus 172 ~isDLt~P~~WyP~AR~~~RkIi~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na~gipCdL~TGeE~~ 251 (700)
T KOG0953|consen 172 KISDLTNPANWYPEARKIRRKIIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNALGIPCDLLTGEERR 251 (700)
T ss_pred hhhccCCCcccCchhHhhhheEEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhhcCCCccccccceee
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCC----CceEEEceeeccccCCccEEEEecCcccCCCCCChhHHHHHhccccccceEeecCCCchHHHHHHHHcCCeE
Q 010836 138 EVDG----AKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDV 213 (499)
Q Consensus 138 ~~~~----~~~iv~T~e~~~~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 213 (499)
.... +.++.||.||.+....+++.||||+|++.|++|||+|+++++|+.++++++||.++.++++++++..+|+++
T Consensus 252 ~~~~~~~~a~hvScTVEM~sv~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGepsvldlV~~i~k~TGd~v 331 (700)
T KOG0953|consen 252 FVLDNGNPAQHVSCTVEMVSVNTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGEPSVLDLVRKILKMTGDDV 331 (700)
T ss_pred ecCCCCCcccceEEEEEEeecCCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCCchHHHHHHHHHhhcCCee
Confidence 7665 899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeecCCCCccccccccccccCCCCEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCcc
Q 010836 214 KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293 (499)
Q Consensus 214 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~iv~~s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~ 293 (499)
++..|+|..|+...+..+..+.++.+|+|||+||++++..+...+++.+..+++++||++||+.|..+...|++++++.+
T Consensus 332 ev~~YeRl~pL~v~~~~~~sl~nlk~GDCvV~FSkk~I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~d 411 (700)
T KOG0953|consen 332 EVREYERLSPLVVEETALGSLSNLKPGDCVVAFSKKDIFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECD 411 (700)
T ss_pred EEEeecccCcceehhhhhhhhccCCCCCeEEEeehhhHHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccc
Confidence 99999999999999988899999999999999999999999999999999889999999999999999999999999999
Q ss_pred EEEecchhhccccccccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCHHHHHhhhCCCCch
Q 010836 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPM 373 (499)
Q Consensus 294 iLvaT~~~~~Gidipv~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 373 (499)
||||||+++||+|+.|++||+++..||+|....+++..+..|.+|||||.|.++..|.+++++.+++..+++.++.+.++
T Consensus 412 vlVAsDAIGMGLNL~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eDL~~L~~~l~~p~ep 491 (700)
T KOG0953|consen 412 VLVASDAIGMGLNLNIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSEDLKLLKRILKRPVEP 491 (700)
T ss_pred eEEeecccccccccceeEEEEeecccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhhHHHHHHHHhCCchH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCChHHHHHHHHhcCCCccHHHHHHHHHHhcccCCCccccChHHHHHHHHhhccCCCCHHHHHhhhcCCCCCCCh
Q 010836 374 LESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPVDMNDD 453 (499)
Q Consensus 374 i~~~~l~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~~~~~~~p~~~~~~ 453 (499)
+..+++.|..+++..|+...|+..+.++++.|...+++++.|++|+.++.+.++.++++++|++++|+.||.||+|..+|
T Consensus 492 i~~agl~pt~eqie~fa~~~Pd~t~snLld~f~~~~~~~~~fflc~~~~~k~va~liehi~L~l~dr~~fc~aPvnk~~p 571 (700)
T KOG0953|consen 492 IKNAGLWPTDEQIELFAYHLPDATPSNLLDIFVKLCEVDGLFFLCNLDDFKFVAELIEHIELPLKDRYKFCTAPVNKKMP 571 (700)
T ss_pred HHhccCCccHHHHHHHHHhCCCccHHHHHHHHHHHHccCCceEEecchhHHHHHHHHHhCCcchhhhheeecCcccccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCccccccccccCCCCccccCC
Q 010836 454 ISSQGLTQFATNYSKKGIVQLREIFTPGLGSLRVAEF 490 (499)
Q Consensus 454 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (499)
.++.+|+++|+.|++++++++.++...-.|+..+|++
T Consensus 572 ~v~~~f~kfa~~~s~~~~l~~~~l~~~~~~p~~~p~t 608 (700)
T KOG0953|consen 572 RVCSAFLKFARQYSQNEPLTFLWLKFNLGWPNKIPKT 608 (700)
T ss_pred hHHHHHHHHHHHHhcCCcccHHHHHHhhcCCCCCCcc
Confidence 9999999999999999999987777666666666654
No 2
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-43 Score=332.60 Aligned_cols=297 Identities=16% Similarity=0.158 Sum_probs=238.7
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----HcC---CCEEEEccHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESS---SSGIYCGPLR 111 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l----~~~---~~~l~l~P~r 111 (499)
.+++++.++++.. ++..||++|+ ++|.+ +++++||..|.||||||.+|+.++ ++. ..++|++|||
T Consensus 67 gv~~~L~~ac~~l-----~~~~PT~IQ~~aiP~~--L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtR 139 (476)
T KOG0330|consen 67 GVHPELLEACQEL-----GWKKPTKIQSEAIPVA--LGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTR 139 (476)
T ss_pred CcCHHHHHHHHHh-----CcCCCchhhhhhcchh--hCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcH
Confidence 5789999999999 9999999999 99999 789999999999999999985444 444 3689999999
Q ss_pred HHHHHHHHHHHhc----CCceeEeeCCeecc------cCCCceEEEceeec-cc--------cCCccEEEEecCcccCCC
Q 010836 112 LLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMA-DV--------VSDYDCAVIDEIQMLGCK 172 (499)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~-~~--------l~~~~~iViDEah~~~~~ 172 (499)
+||.|+.+.+..+ |+.+.++.|+.... ...+.++|+||..+ +. +..++++|+||||.+++.
T Consensus 140 ELA~QI~e~fe~Lg~~iglr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~ 219 (476)
T KOG0330|consen 140 ELAQQIAEQFEALGSGIGLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDM 219 (476)
T ss_pred HHHHHHHHHHHHhccccCeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhh
Confidence 9999999999876 67777788875432 34677889999433 32 478999999999999998
Q ss_pred CCChhHHHHHhccccccceEeecCCCchHHHHHHHHcCC-eEEEE------------eeeecCCCCcccccc-ccccccC
Q 010836 173 TRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD-DVKVQ------------SYERLSPLVPLNVPL-GSFSNIQ 238 (499)
Q Consensus 173 ~~g~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~------------~~~~~~~~~~~~~~l-~~l~~~~ 238 (499)
+++.....+|-.++.....++.+.+..+.+.++....-+ ...+. .++...+..++...+ ..++...
T Consensus 220 dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~ 299 (476)
T KOG0330|consen 220 DFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDTYLVYLLNELA 299 (476)
T ss_pred hhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccchhHHHHHHhhc
Confidence 777777777777777777777776666777777644322 12111 112233333444444 3344555
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcc
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 316 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~ 316 (499)
.+..|||+ +...+..++-.|+..+. .+..+||.|++..|...++.|++ |.+.||||||+++||+|+| |+.|||||
T Consensus 300 g~s~iVF~~t~~tt~~la~~L~~lg~-~a~~LhGqmsq~~Rlg~l~~Fk~--~~r~iLv~TDVaSRGLDip~Vd~VVNyD 376 (476)
T KOG0330|consen 300 GNSVIVFCNTCNTTRFLALLLRNLGF-QAIPLHGQMSQSKRLGALNKFKA--GARSILVCTDVASRGLDIPHVDVVVNYD 376 (476)
T ss_pred CCcEEEEEeccchHHHHHHHHHhcCc-ceecccchhhHHHHHHHHHHHhc--cCCcEEEecchhcccCCCCCceEEEecC
Confidence 66777777 78999999999999888 99999999999999999999999 9999999999999999998 99999999
Q ss_pred cccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC
Q 010836 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 317 ~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~ 358 (499)
. |.+..+|+||+||+||.|.. |.++.+.+.
T Consensus 377 i---------P~~skDYIHRvGRtaRaGrs---G~~ItlVtq 406 (476)
T KOG0330|consen 377 I---------PTHSKDYIHRVGRTARAGRS---GKAITLVTQ 406 (476)
T ss_pred C---------CCcHHHHHHHcccccccCCC---cceEEEEeh
Confidence 9 77999999999999999987 877766544
No 3
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.4e-43 Score=348.47 Aligned_cols=299 Identities=19% Similarity=0.199 Sum_probs=228.2
Q ss_pred CCCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHH----HHc---------CCCE
Q 010836 39 ASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR----LES---------SSSG 104 (499)
Q Consensus 39 ~~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~----l~~---------~~~~ 104 (499)
-.+++.....++.. ||..||++|. .+|.+ +.++|++..+.||||||++|+.+ +.. ++++
T Consensus 96 ~~ls~~~~~~lk~~-----g~~~PtpIQaq~wp~~--l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~v 168 (519)
T KOG0331|consen 96 LGLSEELMKALKEQ-----GFEKPTPIQAQGWPIA--LSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIV 168 (519)
T ss_pred ccccHHHHHHHHhc-----CCCCCchhhhccccee--ccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeE
Confidence 35777888888888 9999999999 99999 88999999999999999998433 333 3468
Q ss_pred EEEccHHHHHHHHHHHHHhc----CCceeEeeCCeecc------cCCCceEEEceeec-cc-------cCCccEEEEecC
Q 010836 105 IYCGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMA-DV-------VSDYDCAVIDEI 166 (499)
Q Consensus 105 l~l~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~-~~-------l~~~~~iViDEa 166 (499)
||++||||||.|+.+.+.++ ++++.+++|+.... ..+..++++||..+ ++ ++++.++|+|||
T Consensus 169 LVL~PTRELA~QV~~~~~~~~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEA 248 (519)
T KOG0331|consen 169 LVLAPTRELAVQVQAEAREFGKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEA 248 (519)
T ss_pred EEEcCcHHHHHHHHHHHHHHcCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccH
Confidence 99999999999999999876 45567788875543 33678999999443 32 489999999999
Q ss_pred cccCCCCCChhHHHHHhccccc-cceEeecCCCchHHHHHHHHc-CCeEEEEeeee--cCCCC----------------c
Q 010836 167 QMLGCKTRGFSFTRALLGICAN-ELHLCGDPAAVPLIQQILQVT-GDDVKVQSYER--LSPLV----------------P 226 (499)
Q Consensus 167 h~~~~~~~g~~~~~~ll~l~~~-~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~--~~~~~----------------~ 226 (499)
|.|++........+++-.+... ...++.+.+-...++.++... .+...+..-.. ..... .
T Consensus 249 DrMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~ 328 (519)
T KOG0331|consen 249 DRMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRK 328 (519)
T ss_pred HhhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHH
Confidence 9999885555567777777333 334444444445555555432 22222221111 00000 0
Q ss_pred cccccccccccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccc
Q 010836 227 LNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGL 305 (499)
Q Consensus 227 ~~~~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gi 305 (499)
....+..+.....+++|||+ |++.|++++..++..+. ++..+||+.++.+|..+++.|++ |+..||||||++++|+
T Consensus 329 l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~-~a~~iHGd~sQ~eR~~~L~~Fre--G~~~vLVATdVAaRGL 405 (519)
T KOG0331|consen 329 LGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGW-PAVAIHGDKSQSERDWVLKGFRE--GKSPVLVATDVAARGL 405 (519)
T ss_pred HHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCc-ceeeecccccHHHHHHHHHhccc--CCcceEEEcccccccC
Confidence 01111222223466788888 99999999999998775 89999999999999999999999 9999999999999999
Q ss_pred ccc-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 306 NLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 306 dip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
||| |++||+||+ |.+.++|+||+||+||+|.+ |..+++...+
T Consensus 406 Di~dV~lVInydf---------P~~vEdYVHRiGRTGRa~~~---G~A~tfft~~ 448 (519)
T KOG0331|consen 406 DVPDVDLVINYDF---------PNNVEDYVHRIGRTGRAGKK---GTAITFFTSD 448 (519)
T ss_pred CCccccEEEeCCC---------CCCHHHHHhhcCccccCCCC---ceEEEEEeHH
Confidence 996 999999999 77999999999999999988 8888777654
No 4
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=6.9e-41 Score=360.89 Aligned_cols=360 Identities=17% Similarity=0.168 Sum_probs=268.7
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc----CCCEEEEccHHHHHHHHHHHHH-hcC----CceeEeeCCeecccCCCceEE
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLES----SSSGIYCGPLRLLAWEVAKRLN-KAN----VSCDLITGQEREEVDGAKHRA 146 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~----~~~~l~l~P~r~La~q~~~~l~-~~g----~~~~~~~g~~~~~~~~~~~iv 146 (499)
++++++++|+||||||+++++++++ ++++++++|+|++|.|+++++. +++ ..+++..+.+.....+..+++
T Consensus 16 ~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~~~~s~~t~I~v 95 (819)
T TIGR01970 16 AHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGENKVSRRTRLEV 95 (819)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccccccCCCCcEEE
Confidence 5789999999999999999888764 3588999999999999999996 344 445555454444445678999
Q ss_pred Eceeec-------cccCCccEEEEecCccc-CCCCCChhHHHHHhccccccceEeecCCCchHHHHHHHHcCC-------
Q 010836 147 VTVEMA-------DVVSDYDCAVIDEIQML-GCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD------- 211 (499)
Q Consensus 147 ~T~e~~-------~~l~~~~~iViDEah~~-~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~------- 211 (499)
+|+..+ ..+.++++|||||+|++ .+.+.+..+...+........+++.++++.+.. .+....+.
T Consensus 96 ~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~-~l~~~l~~~~vI~~~ 174 (819)
T TIGR01970 96 VTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGE-RLSSLLPDAPVVESE 174 (819)
T ss_pred ECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHH-HHHHHcCCCcEEEec
Confidence 999544 23688999999999974 443334444433433334556667777766532 12333322
Q ss_pred --eEEEEeeeecCCCCc-cc----cccccccccCCCCEEEEe-eHHHHHHHHHHHHHc--CCCeEEEEcCCCCHHHHHHH
Q 010836 212 --DVKVQSYERLSPLVP-LN----VPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESR--GKHLCSIVYGSLPPETRTRQ 281 (499)
Q Consensus 212 --~~~~~~~~~~~~~~~-~~----~~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~--~~~~v~~~hg~l~~~~R~~~ 281 (499)
.+.+..++...+... .. ..+..+.....++++||+ ++.+++.+++.|++. ....+.++||+|++++|.++
T Consensus 175 gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~ 254 (819)
T TIGR01970 175 GRSFPVEIRYLPLRGDQRLEDAVSRAVEHALASETGSILVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRA 254 (819)
T ss_pred CcceeeeeEEeecchhhhHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHH
Confidence 222322222111110 00 111112222468888888 899999999999873 24589999999999999999
Q ss_pred HHHhcCCCCCccEEEecchhhcccccc-ccEEEEccccc---ccCc------cccccChhhHHhhhccCCCCCCCCCcEE
Q 010836 282 ATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGE 351 (499)
Q Consensus 282 ~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~---~~~~------~~~p~s~~~~~Qr~GRagR~g~~~~~g~ 351 (499)
++.|++ |+.+||||||++++||||| |++||+++.++ ||+. ...|+|.+++.||+|||||.++ |.
T Consensus 255 ~~~~~~--G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~~----G~ 328 (819)
T TIGR01970 255 IKPDPQ--GRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEP----GV 328 (819)
T ss_pred Hhhccc--CCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCCCC----CE
Confidence 999999 9999999999999999997 99999999875 6664 3678999999999999999965 99
Q ss_pred EEEEcCCCHHHHHhhhCCCCchhhhcCCCChHHHHHHHHh----------cCCCccHHHHHHHHHHhcccCCCccccChH
Q 010836 352 VTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSR----------LHPDSSLYGILEHFLENAKLSENYFFANCE 421 (499)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~~~----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 421 (499)
||.+++++ .+..+.....|+|.+.++.+..+.++.+.. .|+...+..+++.+..+..++.+ +
T Consensus 329 cyrL~t~~--~~~~l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~~~l~~P~~~~i~~a~~~L~~lgald~~------~ 400 (819)
T TIGR01970 329 CYRLWSEE--QHQRLPAQDEPEILQADLSGLALELAQWGAKDPSDLRWLDAPPSVALAAARQLLQRLGALDAQ------G 400 (819)
T ss_pred EEEeCCHH--HHHhhhcCCCcceeccCcHHHHHHHHHcCCCChhhCCCCCCcCHHHHHHHHHHHHHCCCCCCC------C
Confidence 99999876 556788889999999999999999997653 35667899999999999988866 4
Q ss_pred HHHHHHHhhccCCCCHHH-HHhhhcCCCCC
Q 010836 422 EVLKVATVIDQLPLRLHE-KYLFCISPVDM 450 (499)
Q Consensus 422 ~~~~l~~~l~~~~l~~~~-~~~~~~~p~~~ 450 (499)
+++.+|..|..+|+++.. ++++..+...|
T Consensus 401 ~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~ 430 (819)
T TIGR01970 401 RLTAHGKAMAALGCHPRLAAMLLSAHSTGL 430 (819)
T ss_pred CcCHHHHHHHhcCCCHHHHHHHHHhhhcCC
Confidence 689999999999988877 55555444444
No 5
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=3.5e-41 Score=323.57 Aligned_cols=305 Identities=19% Similarity=0.220 Sum_probs=224.5
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-----C-----C--CEEE
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-----S-----S--SGIY 106 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~-----~-----~--~~l~ 106 (499)
.|++++.+.+... ||..||++|. ++|.. ++++||++.++||||||++++.++++ + + .+++
T Consensus 12 ~L~~~l~~~l~~~-----GF~~mTpVQa~tIPll--l~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalI 84 (567)
T KOG0345|consen 12 PLSPWLLEALDES-----GFEKMTPVQAATIPLL--LKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALI 84 (567)
T ss_pred CccHHHHHHHHhc-----CCcccCHHHHhhhHHH--hcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEE
Confidence 4789999999998 9999999999 99998 77999999999999999999766642 1 2 4699
Q ss_pred EccHHHHHHHHHHHHHhc-----CCceeEeeCCeecc-------cCCCceEEEceeec-cc-------c--CCccEEEEe
Q 010836 107 CGPLRLLAWEVAKRLNKA-----NVSCDLITGQEREE-------VDGAKHRAVTVEMA-DV-------V--SDYDCAVID 164 (499)
Q Consensus 107 l~P~r~La~q~~~~l~~~-----g~~~~~~~g~~~~~-------~~~~~~iv~T~e~~-~~-------l--~~~~~iViD 164 (499)
++|||+||.|+.+.+..+ .+.+.+++|+.... .++++++|+||..+ ++ + ..++++|+|
T Consensus 85 IsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLD 164 (567)
T KOG0345|consen 85 ISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLD 164 (567)
T ss_pred ecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEec
Confidence 999999999999988753 67788888874432 23678999999433 22 2 489999999
Q ss_pred cCcccCCCCCChh--HHHHHhccccccceEeecCCCchHHHHHHHHc-CCeEEEEeeeec---CC--CCc---------c
Q 010836 165 EIQMLGCKTRGFS--FTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKVQSYERL---SP--LVP---------L 227 (499)
Q Consensus 165 Eah~~~~~~~g~~--~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~---~~--~~~---------~ 227 (499)
|||.+.+. |+. ...+|-.+++..-.=+.+.+...-+.++...- .....+..-... .| +.. +
T Consensus 165 EADrLldm--gFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK 242 (567)
T KOG0345|consen 165 EADRLLDM--GFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCEADEK 242 (567)
T ss_pred chHhHhcc--cHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEecHHHH
Confidence 99999987 665 33444445544333233444445555554321 122222111100 11 110 1
Q ss_pred -ccccccccccCCCCEEEEe-eHHHHHHHHHHHHHc-CCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcc
Q 010836 228 -NVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESR-GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMG 304 (499)
Q Consensus 228 -~~~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~-~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~G 304 (499)
...+..+.+...+.+|||| |...++..+..+... +...++.+||.|.+..|..+++.|.+ ..-.+|+|||++++|
T Consensus 243 ~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~~--~~~~vl~~TDVaARG 320 (567)
T KOG0345|consen 243 LSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFRK--LSNGVLFCTDVAARG 320 (567)
T ss_pred HHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHHh--ccCceEEeehhhhcc
Confidence 1112334445667889999 899999999988776 56689999999999999999999999 777899999999999
Q ss_pred cccc-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCHHHHHhhh
Q 010836 305 LNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSL 367 (499)
Q Consensus 305 idip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~~~~~~~~ 367 (499)
+||| ||+||++|+ |.+++.|.||+||+||.|.. |..+++-.+....+-+++
T Consensus 321 lDip~iD~VvQ~Dp---------P~~~~~FvHR~GRTaR~gr~---G~Aivfl~p~E~aYveFl 372 (567)
T KOG0345|consen 321 LDIPGIDLVVQFDP---------PKDPSSFVHRCGRTARAGRE---GNAIVFLNPREEAYVEFL 372 (567)
T ss_pred CCCCCceEEEecCC---------CCChhHHHhhcchhhhccCc---cceEEEecccHHHHHHHH
Confidence 9997 999999999 67999999999999999997 665444333433444444
No 6
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=2.8e-40 Score=360.04 Aligned_cols=327 Identities=24% Similarity=0.313 Sum_probs=250.6
Q ss_pred CcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHH----HHcCCCEEEEccHHHHHH
Q 010836 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR----LESSSSGIYCGPLRLLAW 115 (499)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~----l~~~~~~l~l~P~r~La~ 115 (499)
+++.+.+.+++. |+..|+++|. +++... .+++++++++|||||||++|..+ +..+++++|++|+++||.
T Consensus 8 lp~~~~~~l~~~-----g~~~l~p~Q~~ai~~~~-~~g~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~ 81 (737)
T PRK02362 8 LPEGVIEFYEAE-----GIEELYPPQAEAVEAGL-LDGKNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALAS 81 (737)
T ss_pred CCHHHHHHHHhC-----CCCcCCHHHHHHHHHHH-hCCCcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHH
Confidence 889999999988 9999999999 898732 57899999999999999998544 345789999999999999
Q ss_pred HHHHHHHhc---CCceeEeeCCeecc---cCCCceEEEceeecc--------ccCCccEEEEecCcccCCCCCChhHHHH
Q 010836 116 EVAKRLNKA---NVSCDLITGQEREE---VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRA 181 (499)
Q Consensus 116 q~~~~l~~~---g~~~~~~~g~~~~~---~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~~g~~~~~~ 181 (499)
|+++.++++ |+++..++|+.... ....+++|+|||.++ ++.+++++||||+|++.+..||..+...
T Consensus 82 q~~~~~~~~~~~g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~i 161 (737)
T PRK02362 82 EKFEEFERFEELGVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVT 161 (737)
T ss_pred HHHHHHHHhhcCCCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHH
Confidence 999999876 88999999975432 235789999998764 3577999999999999988889887665
Q ss_pred Hhccc--cccceEeecCCCchHHHHHHHHcCCeEEEEeeeecCCCCc------------c---------ccccccccc-c
Q 010836 182 LLGIC--ANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP------------L---------NVPLGSFSN-I 237 (499)
Q Consensus 182 ll~l~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------------~---------~~~l~~l~~-~ 237 (499)
+..+. ....++++.++++++..++..|.+..... ...|+.++.. . ...+..+.+ .
T Consensus 162 l~rl~~~~~~~qii~lSATl~n~~~la~wl~~~~~~-~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (737)
T PRK02362 162 LAKLRRLNPDLQVVALSATIGNADELADWLDAELVD-SEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTL 240 (737)
T ss_pred HHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCCccc-CCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHH
Confidence 54332 35678899999998888888887643211 1111111100 0 011111111 1
Q ss_pred -CCCCEEEEe-eHHHHHHHHHHHHHcCC-----------------------------------CeEEEEcCCCCHHHHHH
Q 010836 238 -QTGDCIVTF-SRHAIYRLKKAIESRGK-----------------------------------HLCSIVYGSLPPETRTR 280 (499)
Q Consensus 238 -~~~~~iv~~-s~~~~~~l~~~L~~~~~-----------------------------------~~v~~~hg~l~~~~R~~ 280 (499)
..++++||+ |++.++.+++.|.+... .++.+|||+|++++|..
T Consensus 241 ~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ 320 (737)
T PRK02362 241 EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHREL 320 (737)
T ss_pred HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHH
Confidence 456777777 89999988888764311 26899999999999999
Q ss_pred HHHHhcCCCCCccEEEecchhhccccccccEEEEcccccccCc-cccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 281 QATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV-ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 281 ~~~~f~~~~g~~~iLvaT~~~~~Gidipv~~VI~~~~~~~~~~-~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
+++.|++ |.++|||||+++++|+|+|...||..+..+||+. +..|.+..+|.||+|||||.|.+ ..|.++.+....
T Consensus 321 ve~~Fr~--G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d-~~G~~ii~~~~~ 397 (737)
T PRK02362 321 VEDAFRD--RLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD-PYGEAVLLAKSY 397 (737)
T ss_pred HHHHHHc--CCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC-CCceEEEEecCc
Confidence 9999999 9999999999999999999778888888888875 45789999999999999999975 568887776553
Q ss_pred --H-HHHHhhhCCCCchhhhc
Q 010836 360 --L-PLLHKSLLEPSPMLESA 377 (499)
Q Consensus 360 --~-~~~~~~~~~~~~~i~~~ 377 (499)
. +.+++++....+++.+.
T Consensus 398 ~~~~~~~~~~l~~~~~~i~S~ 418 (737)
T PRK02362 398 DELDELFERYIWADPEDVRSK 418 (737)
T ss_pred hhHHHHHHHHHhCCCCceeec
Confidence 2 35667776555554433
No 7
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.5e-40 Score=341.51 Aligned_cols=296 Identities=16% Similarity=0.180 Sum_probs=217.2
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc--------------CCCE
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES--------------SSSG 104 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~--------------~~~~ 104 (499)
.+++.+.+.+... ||..|+++|+ ++|.+ ++++|++++||||||||++|+.+++. +.++
T Consensus 14 ~l~~~l~~~l~~~-----g~~~pt~iQ~~aip~i--l~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~ 86 (423)
T PRK04837 14 ALHPQVVEALEKK-----GFHNCTPIQALALPLT--LAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRA 86 (423)
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceE
Confidence 4889999999988 9999999999 99998 67999999999999999998655431 2468
Q ss_pred EEEccHHHHHHHHHHHHHh----cCCceeEeeCCeec------ccCCCceEEEceeecc--------ccCCccEEEEecC
Q 010836 105 IYCGPLRLLAWEVAKRLNK----ANVSCDLITGQERE------EVDGAKHRAVTVEMAD--------VVSDYDCAVIDEI 166 (499)
Q Consensus 105 l~l~P~r~La~q~~~~l~~----~g~~~~~~~g~~~~------~~~~~~~iv~T~e~~~--------~l~~~~~iViDEa 166 (499)
||++|||+||.|+++.+.. .|+++..++|+... ...+.+++|+||+.+. .+.+++++|||||
T Consensus 87 lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEa 166 (423)
T PRK04837 87 LIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEA 166 (423)
T ss_pred EEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecH
Confidence 9999999999999888764 37788888876432 1235689999996552 2478999999999
Q ss_pred cccCCCCCChh--HHHHHhcccc-ccceEeecCCCc-hHHHHHH-HHcCCeEEEEeeeecCC---C---------Ccccc
Q 010836 167 QMLGCKTRGFS--FTRALLGICA-NELHLCGDPAAV-PLIQQIL-QVTGDDVKVQSYERLSP---L---------VPLNV 229 (499)
Q Consensus 167 h~~~~~~~g~~--~~~~ll~l~~-~~~~~~~~~~~~-~~~~~l~-~~~~~~~~~~~~~~~~~---~---------~~~~~ 229 (499)
|++.+. |+. ....+..+.. ...+.+..+++. ..+..+. ........+........ + .....
T Consensus 167 d~l~~~--~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v~~~~~~~~~i~~~~~~~~~~~k~~ 244 (423)
T PRK04837 167 DRMFDL--GFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEVEPEQKTGHRIKEELFYPSNEEKMR 244 (423)
T ss_pred HHHhhc--ccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEEcCCCcCCCceeEEEEeCCHHHHHH
Confidence 999865 543 3333333332 122223333333 3333333 22222221111000000 0 00001
Q ss_pred cc-ccccccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccccc
Q 010836 230 PL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307 (499)
Q Consensus 230 ~l-~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidi 307 (499)
.+ ..+......++|||+ ++..++.+++.|.+.+. .+..+||++++++|..+++.|++ |+++|||||+++++|||+
T Consensus 245 ~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~-~v~~lhg~~~~~~R~~~l~~F~~--g~~~vLVaTdv~~rGiDi 321 (423)
T PRK04837 245 LLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGH-RVGLLTGDVAQKKRLRILEEFTR--GDLDILVATDVAARGLHI 321 (423)
T ss_pred HHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCC-cEEEecCCCChhHHHHHHHHHHc--CCCcEEEEechhhcCCCc
Confidence 11 111222355677777 89999999999988876 99999999999999999999999 999999999999999999
Q ss_pred c-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 308 N-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 308 p-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
| +++||+++. |.+..+|+||+||+||.|.. |.++.+..++
T Consensus 322 p~v~~VI~~d~---------P~s~~~yiqR~GR~gR~G~~---G~ai~~~~~~ 362 (423)
T PRK04837 322 PAVTHVFNYDL---------PDDCEDYVHRIGRTGRAGAS---GHSISLACEE 362 (423)
T ss_pred cccCEEEEeCC---------CCchhheEeccccccCCCCC---eeEEEEeCHH
Confidence 7 999999999 77999999999999999988 8888886654
No 8
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=3.6e-40 Score=356.25 Aligned_cols=359 Identities=17% Similarity=0.180 Sum_probs=267.8
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcC----CCEEEEccHHHHHHHHHHHHHh-c----CCceeEeeCCeecccCCCceEE
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLESS----SSGIYCGPLRLLAWEVAKRLNK-A----NVSCDLITGQEREEVDGAKHRA 146 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~~----~~~l~l~P~r~La~q~~~~l~~-~----g~~~~~~~g~~~~~~~~~~~iv 146 (499)
++++++++||||||||+++++++++. +++++++|||++|.|+++++++ + |..+++.++.+.....+..+++
T Consensus 19 ~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~~~~~~t~I~v 98 (812)
T PRK11664 19 TAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKVGPNTRLEV 98 (812)
T ss_pred hCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCccccCCCCcEEE
Confidence 57899999999999999998888753 5789999999999999999963 3 4556666666555555678999
Q ss_pred Eceeecc-------ccCCccEEEEecCcccCCC-CCChhHHHHHhccccccceEeecCCCchHHHHHHHHcCCe------
Q 010836 147 VTVEMAD-------VVSDYDCAVIDEIQMLGCK-TRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDD------ 212 (499)
Q Consensus 147 ~T~e~~~-------~l~~~~~iViDEah~~~~~-~~g~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 212 (499)
+|+..+. .+.++++|||||+|++.-. +-...+...++.......+++.++++.+.. .+....+..
T Consensus 99 ~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~-~l~~~~~~~~~I~~~ 177 (812)
T PRK11664 99 VTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDND-RLQQLLPDAPVIVSE 177 (812)
T ss_pred EChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHH-HHHHhcCCCCEEEec
Confidence 9995442 4689999999999986422 111222222222223456677777776532 233333321
Q ss_pred ---EEEEeeeecCCCCcc-c----cccccccccCCCCEEEEe-eHHHHHHHHHHHHHc--CCCeEEEEcCCCCHHHHHHH
Q 010836 213 ---VKVQSYERLSPLVPL-N----VPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESR--GKHLCSIVYGSLPPETRTRQ 281 (499)
Q Consensus 213 ---~~~~~~~~~~~~~~~-~----~~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~--~~~~v~~~hg~l~~~~R~~~ 281 (499)
+.+..++...+.... . ..+..+.....++++||+ ++++++.+++.|++. ....+..+||++++++|.++
T Consensus 178 gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~ 257 (812)
T PRK11664 178 GRSFPVERRYQPLPAHQRFDEAVARATAELLRQESGSLLLFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKA 257 (812)
T ss_pred CccccceEEeccCchhhhHHHHHHHHHHHHHHhCCCCEEEEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHH
Confidence 122222111110000 0 011122223468888888 899999999999872 23479999999999999999
Q ss_pred HHHhcCCCCCccEEEecchhhcccccc-ccEEEEccccc---ccCc------cccccChhhHHhhhccCCCCCCCCCcEE
Q 010836 282 ATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGE 351 (499)
Q Consensus 282 ~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~---~~~~------~~~p~s~~~~~Qr~GRagR~g~~~~~g~ 351 (499)
++.|++ |+.+||||||++++||||| |++||+++..+ ||+. ...++|.++|.||+|||||.++ |.
T Consensus 258 ~~~~~~--G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~~----G~ 331 (812)
T PRK11664 258 ILPAPA--GRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEP----GI 331 (812)
T ss_pred hccccC--CCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCCCC----cE
Confidence 999999 9999999999999999997 99999999876 7765 3568899999999999999975 99
Q ss_pred EEEEcCCCHHHHHhhhCCCCchhhhcCCCChHHHHHHHHh----------cCCCccHHHHHHHHHHhcccCCCccccChH
Q 010836 352 VTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSR----------LHPDSSLYGILEHFLENAKLSENYFFANCE 421 (499)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~~~----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~ 421 (499)
||.+++++ .+..+.....|||.+.++.+.++.++.+.. .|+...+..+++.+..+..++.+ +
T Consensus 332 cyrL~t~~--~~~~l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~~~~~~A~~~L~~lgald~~------g 403 (812)
T PRK11664 332 CLHLYSKE--QAERAAAQSEPEILHSDLSGLLLELLQWGCHDPAQLSWLDQPPAAALAAAKRLLQQLGALDGQ------G 403 (812)
T ss_pred EEEecCHH--HHhhCccCCCCceeccchHHHHHHHHHcCCCCHHhCCCCCCCCHHHHHHHHHHHHHCCCCCCC------C
Confidence 99999876 556788999999999999999999987653 35667899999999999988866 4
Q ss_pred HHHHHHHhhccCCCCHHH-HHhhhcCCCC
Q 010836 422 EVLKVATVIDQLPLRLHE-KYLFCISPVD 449 (499)
Q Consensus 422 ~~~~l~~~l~~~~l~~~~-~~~~~~~p~~ 449 (499)
+++.+|+.|.++|+++.. ++++..+...
T Consensus 404 ~lT~~G~~m~~lp~~Prla~~ll~a~~~~ 432 (812)
T PRK11664 404 RLTARGRKMAALGNDPRLAAMLVAAKEDD 432 (812)
T ss_pred CcCHHHHHHHhcCCchHHHHHHHHHHhcC
Confidence 699999999999988877 5655554443
No 9
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=7.6e-40 Score=338.55 Aligned_cols=297 Identities=17% Similarity=0.169 Sum_probs=217.4
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc----C---------CCEE
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES----S---------SSGI 105 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~----~---------~~~l 105 (499)
.+++.+.+.+.+. ||..||++|+ ++|.+ ++++++++++|||||||++|+.+++. . .++|
T Consensus 7 ~l~~~l~~~l~~~-----g~~~pt~iQ~~ai~~i--l~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aL 79 (456)
T PRK10590 7 GLSPDILRAVAEQ-----GYREPTPIQQQAIPAV--LEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRAL 79 (456)
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEE
Confidence 3789999999988 9999999999 99998 66999999999999999998655432 1 2589
Q ss_pred EEccHHHHHHHHHHHHHhc----CCceeEeeCCeecc------cCCCceEEEceeecc--------ccCCccEEEEecCc
Q 010836 106 YCGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQ 167 (499)
Q Consensus 106 ~l~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah 167 (499)
|++||++||.|+++.+.++ ++.+..++|+.... ....+++|+||+.+. .+++++++||||||
T Consensus 80 il~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah 159 (456)
T PRK10590 80 ILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEAD 159 (456)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHH
Confidence 9999999999999998864 56666677764321 235689999996552 35789999999999
Q ss_pred ccCCCCCChhHHHHHhccccccceEeecCCCc-hHHHHHHHHc-CCeEEEEeeeecCCCCc------------ccccccc
Q 010836 168 MLGCKTRGFSFTRALLGICANELHLCGDPAAV-PLIQQILQVT-GDDVKVQSYERLSPLVP------------LNVPLGS 233 (499)
Q Consensus 168 ~~~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~-~~~~~l~~~~-~~~~~~~~~~~~~~~~~------------~~~~l~~ 233 (499)
++.+..+...+...+..+.. ..+.+..+++. +.+..+.... .....+....+...... ....+..
T Consensus 160 ~ll~~~~~~~i~~il~~l~~-~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 238 (456)
T PRK10590 160 RMLDMGFIHDIRRVLAKLPA-KRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQ 238 (456)
T ss_pred HHhccccHHHHHHHHHhCCc-cCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEcCHHHHHHHHHH
Confidence 99865332333344433433 33444444444 3344555433 22222211111100000 0111111
Q ss_pred -ccccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-cc
Q 010836 234 -FSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-IS 310 (499)
Q Consensus 234 -l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~ 310 (499)
+.......+|||+ ++..++.+++.|.+.+. .+..+||++++++|..+++.|++ |+++|||||+++++|||+| |+
T Consensus 239 l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~-~~~~lhg~~~~~~R~~~l~~F~~--g~~~iLVaTdv~~rGiDip~v~ 315 (456)
T PRK10590 239 MIGKGNWQQVLVFTRTKHGANHLAEQLNKDGI-RSAAIHGNKSQGARTRALADFKS--GDIRVLVATDIAARGLDIEELP 315 (456)
T ss_pred HHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCC-CEEEEECCCCHHHHHHHHHHHHc--CCCcEEEEccHHhcCCCcccCC
Confidence 1222345667777 89999999999988776 89999999999999999999999 9999999999999999997 99
Q ss_pred EEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 311 ~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
+||++++ |.+..+|+||+||+||.|.. |.++.+...+
T Consensus 316 ~VI~~~~---------P~~~~~yvqR~GRaGR~g~~---G~ai~l~~~~ 352 (456)
T PRK10590 316 HVVNYEL---------PNVPEDYVHRIGRTGRAAAT---GEALSLVCVD 352 (456)
T ss_pred EEEEeCC---------CCCHHHhhhhccccccCCCC---eeEEEEecHH
Confidence 9999999 77999999999999999987 7776655433
No 10
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.5e-39 Score=351.92 Aligned_cols=388 Identities=20% Similarity=0.249 Sum_probs=275.0
Q ss_pred CcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHH
Q 010836 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAW 115 (499)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l----~~~~~~l~l~P~r~La~ 115 (499)
+++.+.+.+... ++. ++++|. +++.+ .+++++++++|||||||+++..++ ..+++++|++|+++||.
T Consensus 8 l~~~~~~~~~~~-----~~~-l~~~Q~~ai~~l--~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~ 79 (674)
T PRK01172 8 YDDEFLNLFTGN-----DFE-LYDHQRMAIEQL--RKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAM 79 (674)
T ss_pred CCHHHHHHHhhC-----CCC-CCHHHHHHHHHH--hcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHH
Confidence 788999999877 776 999999 99987 669999999999999999986554 34678999999999999
Q ss_pred HHHHHHHh---cCCceeEeeCCeecc---cCCCceEEEceeecc--------ccCCccEEEEecCcccCCCCCChhHHHH
Q 010836 116 EVAKRLNK---ANVSCDLITGQEREE---VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRA 181 (499)
Q Consensus 116 q~~~~l~~---~g~~~~~~~g~~~~~---~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~~g~~~~~~ 181 (499)
|+++.+.+ .|..+...+|+.... ....+++++|||.++ ++.+++++||||+|++.+..+|..+...
T Consensus 80 q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~l 159 (674)
T PRK01172 80 EKYEELSRLRSLGMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETV 159 (674)
T ss_pred HHHHHHHHHhhcCCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHH
Confidence 99998875 478888888865432 236789999997664 2578999999999999988888887665
Q ss_pred Hhcc--ccccceEeecCCCchHHHHHHHHcCCeEEEEeeeecCCCCc-------------c--cccc-ccccc--cCCCC
Q 010836 182 LLGI--CANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP-------------L--NVPL-GSFSN--IQTGD 241 (499)
Q Consensus 182 ll~l--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------------~--~~~l-~~l~~--~~~~~ 241 (499)
+..+ .....++++.+++++...++..|.+.... ....++.++.. . ...+ ..+.+ ...++
T Consensus 160 l~~~~~~~~~~riI~lSATl~n~~~la~wl~~~~~-~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 238 (674)
T PRK01172 160 LSSARYVNPDARILALSATVSNANELAQWLNASLI-KSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQ 238 (674)
T ss_pred HHHHHhcCcCCcEEEEeCccCCHHHHHHHhCCCcc-CCCCCCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCc
Confidence 4332 23467889999998888888887764321 11112222110 0 0000 11111 13567
Q ss_pred EEEEe-eHHHHHHHHHHHHHcC------------------------CCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEE
Q 010836 242 CIVTF-SRHAIYRLKKAIESRG------------------------KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296 (499)
Q Consensus 242 ~iv~~-s~~~~~~l~~~L~~~~------------------------~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLv 296 (499)
++||+ +++.++.+++.|.+.. ..++.+|||+|++++|..+++.|++ |.++|||
T Consensus 239 vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~--g~i~VLv 316 (674)
T PRK01172 239 VLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRN--RYIKVIV 316 (674)
T ss_pred EEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHc--CCCeEEE
Confidence 77777 8999999998886531 1258899999999999999999999 9999999
Q ss_pred ecchhhccccccccEEEEcccccccCccccccChhhHHhhhccCCCCCCC-CCcEEEEEEcCCCHHHHHhhhCCCCchhh
Q 010836 297 ASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-FPVGEVTCLDSEDLPLLHKSLLEPSPMLE 375 (499)
Q Consensus 297 aT~~~~~Gidipv~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 375 (499)
||+++++|+|+|...||+.+.++|++....|++..+|.||+|||||.|.+ .+.|++++...++.+.+++++....+++.
T Consensus 317 aT~~la~Gvnipa~~VII~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~ 396 (674)
T PRK01172 317 ATPTLAAGVNLPARLVIVRDITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVI 396 (674)
T ss_pred ecchhhccCCCcceEEEEcCceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCcee
Confidence 99999999999988999999999988777899999999999999999964 23344444333334667777755544433
Q ss_pred hcCCCCh-----------------HHHHHHH-----HhcC-C----CccHHHHHHHHHHhcccCCCccccChHHHHHHHH
Q 010836 376 SAGLFPN-----------------FDLIYMY-----SRLH-P----DSSLYGILEHFLENAKLSENYFFANCEEVLKVAT 428 (499)
Q Consensus 376 ~~~l~~~-----------------~~~l~~~-----~~~~-~----~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 428 (499)
+.--.+. ...+..| .... + ...+.++++.+.+...++.. +.-..+.+|.
T Consensus 397 S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~----~~~~~t~lG~ 472 (674)
T PRK01172 397 SYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGD----VTLRATRLGK 472 (674)
T ss_pred ecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccC----CcEeECHHHH
Confidence 2211111 1111112 1111 1 12345566666666555422 1124678888
Q ss_pred hhccCCCCHHHHHhh
Q 010836 429 VIDQLPLRLHEKYLF 443 (499)
Q Consensus 429 ~l~~~~l~~~~~~~~ 443 (499)
+++.+++++..-..|
T Consensus 473 ~~s~~~l~~~t~~~~ 487 (674)
T PRK01172 473 LTSDLYIDPESALIL 487 (674)
T ss_pred HHHHhCCCHHHHHHH
Confidence 888888877664433
No 11
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=7.9e-40 Score=343.52 Aligned_cols=297 Identities=18% Similarity=0.174 Sum_probs=216.6
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----c--------CCCEEE
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S--------SSSGIY 106 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~----~--------~~~~l~ 106 (499)
.+++.+.+.++.. ||..||++|. ++|.+ +++++++++||||||||++|+.+++ . +..+||
T Consensus 136 ~l~~~l~~~l~~~-----g~~~pt~iQ~~aip~~--l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LI 208 (545)
T PTZ00110 136 SFPDYILKSLKNA-----GFTEPTPIQVQGWPIA--LSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLV 208 (545)
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 5789999999988 9999999999 99998 6799999999999999999854432 1 235799
Q ss_pred EccHHHHHHHHHHHHHhc----CCceeEeeCCeecc------cCCCceEEEceeec-c-------ccCCccEEEEecCcc
Q 010836 107 CGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMA-D-------VVSDYDCAVIDEIQM 168 (499)
Q Consensus 107 l~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~-~-------~l~~~~~iViDEah~ 168 (499)
++|||+||.|+.+.+.++ ++.+..++|+.... ..+..++|+||+.+ + .+.+++++||||||+
T Consensus 209 L~PTreLa~Qi~~~~~~~~~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~ 288 (545)
T PTZ00110 209 LAPTRELAEQIREQCNKFGASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADR 288 (545)
T ss_pred ECChHHHHHHHHHHHHHHhcccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHh
Confidence 999999999999999875 45666666654321 23568999999544 2 357899999999999
Q ss_pred cCCCCCChhHHHHHhccccccceEeecCCCc-hHHHHHHHHcC-C-eEEEE--eeeecC--CC---------Ccccccc-
Q 010836 169 LGCKTRGFSFTRALLGICANELHLCGDPAAV-PLIQQILQVTG-D-DVKVQ--SYERLS--PL---------VPLNVPL- 231 (499)
Q Consensus 169 ~~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~-~~~~~l~~~~~-~-~~~~~--~~~~~~--~~---------~~~~~~l- 231 (499)
+.+..+...+..++..+.. ..+++..+++. +.+..+....- . ...+. ...... .. ..+...+
T Consensus 289 mld~gf~~~i~~il~~~~~-~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~ 367 (545)
T PTZ00110 289 MLDMGFEPQIRKIVSQIRP-DRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLK 367 (545)
T ss_pred hhhcchHHHHHHHHHhCCC-CCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHH
Confidence 9975333333444433433 33444444443 33344433221 1 11111 000000 00 0000111
Q ss_pred cccccc--CCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc
Q 010836 232 GSFSNI--QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308 (499)
Q Consensus 232 ~~l~~~--~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip 308 (499)
..+... ..+++|||+ +++.++.+++.|+..+. .+..+||++++++|..+++.|++ |+.+|||||+++++|||+|
T Consensus 368 ~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~-~~~~ihg~~~~~eR~~il~~F~~--G~~~ILVaTdv~~rGIDi~ 444 (545)
T PTZ00110 368 MLLQRIMRDGDKILIFVETKKGADFLTKELRLDGW-PALCIHGDKKQEERTWVLNEFKT--GKSPIMIATDVASRGLDVK 444 (545)
T ss_pred HHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCC-cEEEEECCCcHHHHHHHHHHHhc--CCCcEEEEcchhhcCCCcc
Confidence 111111 345677777 89999999999988766 89999999999999999999999 9999999999999999997
Q ss_pred -ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 309 -ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 309 -v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
|++||+++. |.+..+|+||+||+||.|.. |.++.+.+++
T Consensus 445 ~v~~VI~~d~---------P~s~~~yvqRiGRtGR~G~~---G~ai~~~~~~ 484 (545)
T PTZ00110 445 DVKYVINFDF---------PNQIEDYVHRIGRTGRAGAK---GASYTFLTPD 484 (545)
T ss_pred cCCEEEEeCC---------CCCHHHHHHHhcccccCCCC---ceEEEEECcc
Confidence 999999999 77999999999999999987 8888876655
No 12
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.6e-40 Score=333.43 Aligned_cols=359 Identities=22% Similarity=0.292 Sum_probs=277.9
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcCC-----CEEEEccHHHHHHHHHHHHHh-cCC----ceeEeeCCeecccCCCceE
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLESSS-----SGIYCGPLRLLAWEVAKRLNK-ANV----SCDLITGQEREEVDGAKHR 145 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~~~-----~~l~l~P~r~La~q~~~~l~~-~g~----~~~~~~g~~~~~~~~~~~i 145 (499)
+++.+++.|+||||||++.+|.|.+.| ++.+.+|+|..|..+++|+++ .|. .|++....+......+.+.
T Consensus 65 ~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY~IRFed~ts~~Trik 144 (674)
T KOG0922|consen 65 DNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGYTIRFEDSTSKDTRIK 144 (674)
T ss_pred HCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeeeEEEecccCCCceeEE
Confidence 589999999999999999999998754 456669999999999999984 344 4444433334444467888
Q ss_pred EEceeec-------cccCCccEEEEecCcccCCCCCChhHHHHHhccccc------cceEeecCCCch--HHHHHHHH--
Q 010836 146 AVTVEMA-------DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN------ELHLCGDPAAVP--LIQQILQV-- 208 (499)
Q Consensus 146 v~T~e~~-------~~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~------~~~~~~~~~~~~--~~~~l~~~-- 208 (499)
+.|-.++ +.+.++++|||||||+.+-. ++.|+|+.++ .++++-++++++ ...+++..
T Consensus 145 ymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~------TDiLlGlLKki~~~R~~LklIimSATlda~kfS~yF~~a~ 218 (674)
T KOG0922|consen 145 YMTDGMLLREILKDPLLSKYSVIILDEAHERSLH------TDILLGLLKKILKKRPDLKLIIMSATLDAEKFSEYFNNAP 218 (674)
T ss_pred EecchHHHHHHhcCCccccccEEEEechhhhhhH------HHHHHHHHHHHHhcCCCceEEEEeeeecHHHHHHHhcCCc
Confidence 9998655 45799999999999998865 9999998753 456666666664 44455443
Q ss_pred ----cCCeEEEEeeeecCCC-Cccccccc----cccccCCCCEEEEe-eHHHHHHHHHHHHHcCC-------CeEEEEcC
Q 010836 209 ----TGDDVKVQSYERLSPL-VPLNVPLG----SFSNIQTGDCIVTF-SRHAIYRLKKAIESRGK-------HLCSIVYG 271 (499)
Q Consensus 209 ----~~~~~~~~~~~~~~~~-~~~~~~l~----~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~-------~~v~~~hg 271 (499)
.|..+++..++-..+. ++..+.+. .....++|++++|. ++++++.+++.|.+... ..+.++||
T Consensus 219 i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~ 298 (674)
T KOG0922|consen 219 ILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYG 298 (674)
T ss_pred eEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecc
Confidence 3445555555433332 22233332 22335789999999 69999999999987521 13578999
Q ss_pred CCCHHHHHHHHHHhcC-CCCCccEEEecchhhcccccc-ccEEEEccccc---ccCc------cccccChhhHHhhhccC
Q 010836 272 SLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRA 340 (499)
Q Consensus 272 ~l~~~~R~~~~~~f~~-~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~---~~~~------~~~p~s~~~~~Qr~GRa 340 (499)
+|+.+ ++.+.|.. |+|.++|++||++++++++|| |.+||+.+..| |++. ...|+|.++..||+|||
T Consensus 299 aL~~e---~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRA 375 (674)
T KOG0922|consen 299 ALPSE---EQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRA 375 (674)
T ss_pred cCCHH---HhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccC
Confidence 99999 56666766 459999999999999999997 99999988876 7775 36789999999999999
Q ss_pred CCCCCCCCcEEEEEEcCCCHHHHHhhhCCCCchhhhcCCCChHHHHHHHH----------hcCCCccHHHHHHHHHHhcc
Q 010836 341 GRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS----------RLHPDSSLYGILEHFLENAK 410 (499)
Q Consensus 341 gR~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~~----------~~~~~~~l~~~l~~~~~~~~ 410 (499)
||.|+ |.||.+++++ .++++.....|+|.+.++....++|+.+. +.|+..++..+++.+..+.+
T Consensus 376 GRt~p----GkcyRLYte~--~~~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F~f~d~P~~~~l~~AL~~L~~lga 449 (674)
T KOG0922|consen 376 GRTGP----GKCYRLYTES--AYDKMPLQTVPEIQRVNLSSAVLQLKALGINDPLRFPFIDPPPPEALEEALEELYSLGA 449 (674)
T ss_pred CCCCC----ceEEEeeeHH--HHhhcccCCCCceeeechHHHHHHHHhcCCCCcccCCCCCCCChHHHHHHHHHHHhcCc
Confidence 99999 9999999987 66999999999999999999999999744 45778899999999999999
Q ss_pred cCCCccccChHHHHH-HHHhhccCCCCHHH-HHhhhcCCCCCCChHH
Q 010836 411 LSENYFFANCEEVLK-VATVIDQLPLRLHE-KYLFCISPVDMNDDIS 455 (499)
Q Consensus 411 ~~~~~~~~~~~~~~~-l~~~l~~~~l~~~~-~~~~~~~p~~~~~~~~ 455 (499)
+++.. .++. +|..+.++|+++.. +.++.+..++|..+.+
T Consensus 450 ld~~g------~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l 490 (674)
T KOG0922|consen 450 LDDRG------KLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEIL 490 (674)
T ss_pred ccCcC------CcCchHHhhhhhcCCCcchhhhhhhccccCCcchhh
Confidence 99774 3455 99999999986654 6666666666655443
No 13
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=5.2e-40 Score=341.06 Aligned_cols=296 Identities=20% Similarity=0.158 Sum_probs=220.3
Q ss_pred CcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEEEEccHHH
Q 010836 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLRL 112 (499)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~-------~~~~l~l~P~r~ 112 (499)
+++.+.+.+... ||..++++|+ ++|.+ +++++++++||||||||++|+.+++. ..+++|++||++
T Consensus 11 l~~~l~~~l~~~-----g~~~~t~iQ~~ai~~~--l~g~dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~Ptre 83 (460)
T PRK11776 11 LPPALLANLNEL-----GYTEMTPIQAQSLPAI--LAGKDVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRE 83 (460)
T ss_pred CCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hcCCCEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHH
Confidence 888999999998 9999999999 99998 66999999999999999998665543 126899999999
Q ss_pred HHHHHHHHHHhc-----CCceeEeeCCeec------ccCCCceEEEceeecc--------ccCCccEEEEecCcccCCCC
Q 010836 113 LAWEVAKRLNKA-----NVSCDLITGQERE------EVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKT 173 (499)
Q Consensus 113 La~q~~~~l~~~-----g~~~~~~~g~~~~------~~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~ 173 (499)
||.|+++.++.+ ++.+..++|+... ...+.+++|+||+.+. .+.+++++|+||||++.+..
T Consensus 84 La~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g 163 (460)
T PRK11776 84 LADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMG 163 (460)
T ss_pred HHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcC
Confidence 999999988753 5677777876432 1246789999996552 24789999999999998663
Q ss_pred CChhHHHHHhccccccceEeecCCCc-hHHHHHHHHc-CCeEEEEeeee-----------cCCCCcccccc-ccccccCC
Q 010836 174 RGFSFTRALLGICANELHLCGDPAAV-PLIQQILQVT-GDDVKVQSYER-----------LSPLVPLNVPL-GSFSNIQT 239 (499)
Q Consensus 174 ~g~~~~~~ll~l~~~~~~~~~~~~~~-~~~~~l~~~~-~~~~~~~~~~~-----------~~~~~~~~~~l-~~l~~~~~ 239 (499)
++..+...+-.+. ...+.+..+++. +.+..+.... .....+..... ..+.......+ ..+....+
T Consensus 164 ~~~~l~~i~~~~~-~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~ 242 (460)
T PRK11776 164 FQDAIDAIIRQAP-ARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVSPDERLPALQRLLLHHQP 242 (460)
T ss_pred cHHHHHHHHHhCC-cccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeCcHHHHHHHHHHHHhcCC
Confidence 3333333443333 333444444443 3444544432 22222211100 00000011111 12223345
Q ss_pred CCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEccc
Q 010836 240 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTM 317 (499)
Q Consensus 240 ~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~ 317 (499)
+.++||+ +++.++.+++.|.+.+. .+..+||++++.+|..+++.|++ |+.+|||||+++++|+|+| +++||+++.
T Consensus 243 ~~~lVF~~t~~~~~~l~~~L~~~~~-~v~~~hg~~~~~eR~~~l~~F~~--g~~~vLVaTdv~~rGiDi~~v~~VI~~d~ 319 (460)
T PRK11776 243 ESCVVFCNTKKECQEVADALNAQGF-SALALHGDLEQRDRDQVLVRFAN--RSCSVLVATDVAARGLDIKALEAVINYEL 319 (460)
T ss_pred CceEEEECCHHHHHHHHHHHHhCCC-cEEEEeCCCCHHHHHHHHHHHHc--CCCcEEEEecccccccchhcCCeEEEecC
Confidence 5677777 99999999999998877 99999999999999999999999 9999999999999999997 999999999
Q ss_pred ccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 318 KKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 318 ~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
|.+..+|+||+||+||.|.. |.++.+...+
T Consensus 320 ---------p~~~~~yiqR~GRtGR~g~~---G~ai~l~~~~ 349 (460)
T PRK11776 320 ---------ARDPEVHVHRIGRTGRAGSK---GLALSLVAPE 349 (460)
T ss_pred ---------CCCHhHhhhhcccccCCCCc---ceEEEEEchh
Confidence 77999999999999999987 8888776654
No 14
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=6.8e-40 Score=345.09 Aligned_cols=295 Identities=18% Similarity=0.233 Sum_probs=216.4
Q ss_pred CcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc--------------CCCEE
Q 010836 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES--------------SSSGI 105 (499)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~--------------~~~~l 105 (499)
+++.+.+.|++. ||..+|++|+ ++|.+ ++++|+++++|||||||++|+.++++ ..++|
T Consensus 16 l~~~l~~~L~~~-----g~~~ptpiQ~~~ip~~--l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raL 88 (572)
T PRK04537 16 LHPALLAGLESA-----GFTRCTPIQALTLPVA--LPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRAL 88 (572)
T ss_pred CCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEE
Confidence 889999999988 9999999999 99998 67999999999999999998665532 24789
Q ss_pred EEccHHHHHHHHHHHHHhc----CCceeEeeCCeecc------cCCCceEEEceeecc---------ccCCccEEEEecC
Q 010836 106 YCGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD---------VVSDYDCAVIDEI 166 (499)
Q Consensus 106 ~l~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~---------~l~~~~~iViDEa 166 (499)
|++||++|+.|+++.+.++ ++.+..++|+.... ..+.+++|+||+.+. .+..++++|||||
T Consensus 89 Il~PTreLa~Qi~~~~~~l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEA 168 (572)
T PRK04537 89 ILAPTRELAIQIHKDAVKFGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEA 168 (572)
T ss_pred EEeCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCH
Confidence 9999999999999998864 67778888865322 235679999995541 2467889999999
Q ss_pred cccCCCCCChh--HHHHHhccccc-cceEeecCCCch-HHHHHH-HHcCCeEEEEe-eeecCC-----------CCcccc
Q 010836 167 QMLGCKTRGFS--FTRALLGICAN-ELHLCGDPAAVP-LIQQIL-QVTGDDVKVQS-YERLSP-----------LVPLNV 229 (499)
Q Consensus 167 h~~~~~~~g~~--~~~~ll~l~~~-~~~~~~~~~~~~-~~~~l~-~~~~~~~~~~~-~~~~~~-----------~~~~~~ 229 (499)
|++.+. |+. ...++..+... ..+++..+++.+ .+..+. ........+.. ...... ......
T Consensus 169 h~lld~--gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~~~~k~~ 246 (572)
T PRK04537 169 DRMFDL--GFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPADEEKQT 246 (572)
T ss_pred HHHhhc--chHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecCHHHHHH
Confidence 999865 543 23333333321 234444444432 222222 22222111110 000000 000001
Q ss_pred cc-ccccccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccccc
Q 010836 230 PL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307 (499)
Q Consensus 230 ~l-~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidi 307 (499)
.+ ..+.......+|||+ ++..++.+++.|.+.+. .+..+||+|++.+|..+++.|++ |+.+|||||+++++|||+
T Consensus 247 ~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~-~v~~lhg~l~~~eR~~il~~Fr~--G~~~VLVaTdv~arGIDi 323 (572)
T PRK04537 247 LLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGY-RVGVLSGDVPQKKRESLLNRFQK--GQLEILVATDVAARGLHI 323 (572)
T ss_pred HHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCC-CEEEEeCCCCHHHHHHHHHHHHc--CCCeEEEEehhhhcCCCc
Confidence 11 122223455677777 99999999999988876 89999999999999999999999 999999999999999999
Q ss_pred c-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 308 N-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 308 p-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
| |++||+++. |.+..+|+||+||+||.|.. |.++.+..++
T Consensus 324 p~V~~VInyd~---------P~s~~~yvqRiGRaGR~G~~---G~ai~~~~~~ 364 (572)
T PRK04537 324 DGVKYVYNYDL---------PFDAEDYVHRIGRTARLGEE---GDAISFACER 364 (572)
T ss_pred cCCCEEEEcCC---------CCCHHHHhhhhcccccCCCC---ceEEEEecHH
Confidence 7 999999999 77999999999999999987 8887776553
No 15
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.3e-40 Score=340.16 Aligned_cols=294 Identities=23% Similarity=0.288 Sum_probs=221.3
Q ss_pred CcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc------CC--C-EEEEccH
Q 010836 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES------SS--S-GIYCGPL 110 (499)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~------~~--~-~l~l~P~ 110 (499)
+++.+.+.+.+. ||..||++|. ++|.+ +.++|+++.|+||||||.+|..++++ .. . +|+++||
T Consensus 36 l~~~ll~~l~~~-----gf~~pt~IQ~~~IP~~--l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PT 108 (513)
T COG0513 36 LSPELLQALKDL-----GFEEPTPIQLAAIPLI--LAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPT 108 (513)
T ss_pred CCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCC
Confidence 789999999998 9999999999 99999 77999999999999999998554432 11 2 8999999
Q ss_pred HHHHHHHHHHHHhc-----CCceeEeeCCeecc------cCCCceEEEcee-eccc-------cCCccEEEEecCcccCC
Q 010836 111 RLLAWEVAKRLNKA-----NVSCDLITGQEREE------VDGAKHRAVTVE-MADV-------VSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 111 r~La~q~~~~l~~~-----g~~~~~~~g~~~~~------~~~~~~iv~T~e-~~~~-------l~~~~~iViDEah~~~~ 171 (499)
|+||.|+++.+..+ ++.+..++|+.... ..+.+++|+||. .++. +.++.++|+||||+|++
T Consensus 109 RELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd 188 (513)
T COG0513 109 RELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLD 188 (513)
T ss_pred HHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhc
Confidence 99999999998853 46677888865432 125889999994 3332 48899999999999998
Q ss_pred CCCChh--HHHHHhccccccceEeecCCCchHHHHHHHHc-CCeEEEEeeeecC--CCC------------c-cccccc-
Q 010836 172 KTRGFS--FTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKVQSYERLS--PLV------------P-LNVPLG- 232 (499)
Q Consensus 172 ~~~g~~--~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~--~~~------------~-~~~~l~- 232 (499)
. |+. ...++-.++.....++.+.+..+.+..+.... .+...+....... ... . +...+.
T Consensus 189 ~--Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ 266 (513)
T COG0513 189 M--GFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVESEEEKLELLLK 266 (513)
T ss_pred C--CCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCCHHHHHHHHHH
Confidence 7 665 34444445543434444443334455554322 2222111110000 000 0 111121
Q ss_pred cccccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-cc
Q 010836 233 SFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-IS 310 (499)
Q Consensus 233 ~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~ 310 (499)
.+.....+.+|||+ |+..++.++..|...+. ++..+||++++++|.++++.|++ |+.+||||||+++|||||| |+
T Consensus 267 ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~-~~~~lhG~l~q~~R~~~l~~F~~--g~~~vLVaTDvaaRGiDi~~v~ 343 (513)
T COG0513 267 LLKDEDEGRVIVFVRTKRLVEELAESLRKRGF-KVAALHGDLPQEERDRALEKFKD--GELRVLVATDVAARGLDIPDVS 343 (513)
T ss_pred HHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCC-eEEEecCCCCHHHHHHHHHHHHc--CCCCEEEEechhhccCCccccc
Confidence 22223455678887 89999999999999986 99999999999999999999999 9999999999999999997 99
Q ss_pred EEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC
Q 010836 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 311 ~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~ 358 (499)
+||+||. |.+.+.|+||+||+||.|.. |..+.+..+
T Consensus 344 ~VinyD~---------p~~~e~yvHRiGRTgRaG~~---G~ai~fv~~ 379 (513)
T COG0513 344 HVINYDL---------PLDPEDYVHRIGRTGRAGRK---GVAISFVTE 379 (513)
T ss_pred eeEEccC---------CCCHHHheeccCccccCCCC---CeEEEEeCc
Confidence 9999999 77999999999999999988 888777764
No 16
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.3e-39 Score=339.02 Aligned_cols=295 Identities=20% Similarity=0.198 Sum_probs=215.8
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH--------------cCCCE
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE--------------SSSSG 104 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~--------------~~~~~ 104 (499)
.+++.+.+.+... ||..||++|. ++|.+ ++++++++++|||||||++|+.+++ .+.++
T Consensus 127 ~l~~~l~~~L~~~-----g~~~ptpiQ~~aip~i--l~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~a 199 (518)
T PLN00206 127 GLPPKLLLNLETA-----GYEFPTPIQMQAIPAA--LSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLA 199 (518)
T ss_pred CCCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--hcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceE
Confidence 4899999999988 9999999999 99998 6799999999999999999866553 12468
Q ss_pred EEEccHHHHHHHHHHHHHhc----CCceeEeeCCeec------ccCCCceEEEceeec-c-------ccCCccEEEEecC
Q 010836 105 IYCGPLRLLAWEVAKRLNKA----NVSCDLITGQERE------EVDGAKHRAVTVEMA-D-------VVSDYDCAVIDEI 166 (499)
Q Consensus 105 l~l~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~------~~~~~~~iv~T~e~~-~-------~l~~~~~iViDEa 166 (499)
||++|||+||.|+.+.++.+ ++.+..+.|+... ...+..++|+||+.+ + .+.+++++|||||
T Consensus 200 LIL~PTreLa~Qi~~~~~~l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEa 279 (518)
T PLN00206 200 MVLTPTRELCVQVEDQAKVLGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEV 279 (518)
T ss_pred EEEeCCHHHHHHHHHHHHHHhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecH
Confidence 99999999999999888754 4455555554321 223578999999655 2 2578999999999
Q ss_pred cccCCCCCChh--HHHHHhccccccceEeecCCCc-hHHHHHHHHcCCeEEEEeeeecCC-CC------------ccccc
Q 010836 167 QMLGCKTRGFS--FTRALLGICANELHLCGDPAAV-PLIQQILQVTGDDVKVQSYERLSP-LV------------PLNVP 230 (499)
Q Consensus 167 h~~~~~~~g~~--~~~~ll~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~-~~------------~~~~~ 230 (499)
|++.+. |+. ....+..+.. .+++..+++. +.+..+.................. .. .....
T Consensus 280 d~ml~~--gf~~~i~~i~~~l~~--~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~~~~~~~~~k~~~ 355 (518)
T PLN00206 280 DCMLER--GFRDQVMQIFQALSQ--PQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQLAIWVETKQKKQK 355 (518)
T ss_pred HHHhhc--chHHHHHHHHHhCCC--CcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEEEEeccchhHHHH
Confidence 999864 543 2333333332 2344444444 344555544333222211111000 00 00001
Q ss_pred c-cccccc--CCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccc
Q 010836 231 L-GSFSNI--QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN 306 (499)
Q Consensus 231 l-~~l~~~--~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gid 306 (499)
+ ..+... ..+.+|||+ ++..++.+++.|.......+..+||++++++|..+++.|++ |+.+|||||+++++|||
T Consensus 356 l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~--G~~~ILVaTdvl~rGiD 433 (518)
T PLN00206 356 LFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLV--GEVPVIVATGVLGRGVD 433 (518)
T ss_pred HHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHC--CCCCEEEEecHhhccCC
Confidence 1 111111 124566666 89999999999987555589999999999999999999999 99999999999999999
Q ss_pred cc-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 307 LN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 307 ip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
+| +++||++++ |.+..+|+||+|||||.|.. |.++.+..++
T Consensus 434 ip~v~~VI~~d~---------P~s~~~yihRiGRaGR~g~~---G~ai~f~~~~ 475 (518)
T PLN00206 434 LLRVRQVIIFDM---------PNTIKEYIHQIGRASRMGEK---GTAIVFVNEE 475 (518)
T ss_pred cccCCEEEEeCC---------CCCHHHHHHhccccccCCCC---eEEEEEEchh
Confidence 97 999999999 77999999999999999987 8887776554
No 17
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=3.1e-39 Score=334.96 Aligned_cols=295 Identities=19% Similarity=0.223 Sum_probs=216.5
Q ss_pred cccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHH-HHHHcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeC
Q 010836 56 KFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL-SRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITG 133 (499)
Q Consensus 56 ~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l-~~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g 133 (499)
.+||..+++.|+ +++.+ ++++++++++|||||||++|+ ..+...+.+||++|+++|+.|+++.+...|+++..++|
T Consensus 6 ~~g~~~~r~~Q~~ai~~~--l~g~dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~gi~~~~l~~ 83 (470)
T TIGR00614 6 VFGLSSFRPVQLEVINAV--LLGRDCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKASGIPATFLNS 83 (470)
T ss_pred hcCCCCCCHHHHHHHHHH--HcCCCEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHcCCcEEEEeC
Confidence 479999999999 99998 668999999999999999984 45566788999999999999999999999999988887
Q ss_pred Ceecc----------cCCCceEEEceeecc----------ccCCccEEEEecCcccCCCCCChhHHHHH------hcccc
Q 010836 134 QEREE----------VDGAKHRAVTVEMAD----------VVSDYDCAVIDEIQMLGCKTRGFSFTRAL------LGICA 187 (499)
Q Consensus 134 ~~~~~----------~~~~~~iv~T~e~~~----------~l~~~~~iViDEah~~~~~~~g~~~~~~l------l~l~~ 187 (499)
..... .....++++||+.+. ...+++++||||||+++ +||+.+.... ....+
T Consensus 84 ~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~--~~g~~fr~~~~~l~~l~~~~~ 161 (470)
T TIGR00614 84 SQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCIS--QWGHDFRPDYKALGSLKQKFP 161 (470)
T ss_pred CCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccC--ccccccHHHHHHHHHHHHHcC
Confidence 64322 224679999997652 24679999999999998 5676543221 11111
Q ss_pred ccceEeecCCCc--hHHHHHHHHcCC---eEEEEeeeecCC------C--Ccccccccccc-ccCCCCEEEEe-eHHHHH
Q 010836 188 NELHLCGDPAAV--PLIQQILQVTGD---DVKVQSYERLSP------L--VPLNVPLGSFS-NIQTGDCIVTF-SRHAIY 252 (499)
Q Consensus 188 ~~~~~~~~~~~~--~~~~~l~~~~~~---~~~~~~~~~~~~------~--~~~~~~l~~l~-~~~~~~~iv~~-s~~~~~ 252 (499)
..++++.+++. .....+....+- ......+.+..- . ......+..+. .......|||+ |+++++
T Consensus 162 -~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~nl~~~v~~~~~~~~~~l~~~l~~~~~~~~~IIF~~s~~~~e 240 (470)
T TIGR00614 162 -NVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRPNLYYEVRRKTPKILEDLLRFIRKEFKGKSGIIYCPSRKKSE 240 (470)
T ss_pred -CCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCCCcEEEEEeCCccHHHHHHHHHHHhcCCCceEEEECcHHHHH
Confidence 23344444433 334455554432 111111111100 0 00011112222 12333435555 999999
Q ss_pred HHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccccccCccccccChh
Q 010836 253 RLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVP 331 (499)
Q Consensus 253 ~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~ 331 (499)
.+++.|++.+. .+..+||+|++++|..+++.|++ |+.+|||||+++++|||+| |++||+++. |.+..
T Consensus 241 ~la~~L~~~g~-~~~~~H~~l~~~eR~~i~~~F~~--g~~~vLVaT~~~~~GID~p~V~~VI~~~~---------P~s~~ 308 (470)
T TIGR00614 241 QVTASLQNLGI-AAGAYHAGLEISARDDVHHKFQR--DEIQVVVATVAFGMGINKPDVRFVIHYSL---------PKSME 308 (470)
T ss_pred HHHHHHHhcCC-CeeEeeCCCCHHHHHHHHHHHHc--CCCcEEEEechhhccCCcccceEEEEeCC---------CCCHH
Confidence 99999998876 89999999999999999999999 9999999999999999997 999999999 66999
Q ss_pred hHHhhhccCCCCCCCCCcEEEEEEcCC-CHHHHHhhhCCC
Q 010836 332 EVKQIAGRAGRYGSKFPVGEVTCLDSE-DLPLLHKSLLEP 370 (499)
Q Consensus 332 ~~~Qr~GRagR~g~~~~~g~~~~~~~~-~~~~~~~~~~~~ 370 (499)
+|+||+|||||.|.. |.|+.++.. +...++.++...
T Consensus 309 ~y~Qr~GRaGR~G~~---~~~~~~~~~~d~~~~~~~~~~~ 345 (470)
T TIGR00614 309 SYYQESGRAGRDGLP---SECHLFYAPADINRLRRLLMEE 345 (470)
T ss_pred HHHhhhcCcCCCCCC---ceEEEEechhHHHHHHHHHhcC
Confidence 999999999999987 888777654 445666665443
No 18
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=4.8e-39 Score=331.77 Aligned_cols=296 Identities=19% Similarity=0.178 Sum_probs=218.2
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-----------CCCEEEE
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-----------SSSGIYC 107 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~-----------~~~~l~l 107 (499)
.+++.+.+.++.. ||..|+++|+ ++|.+ +++++++++||||||||++|+.+++. ..+++|+
T Consensus 7 ~l~~~l~~~l~~~-----g~~~p~~iQ~~ai~~~--~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil 79 (434)
T PRK11192 7 ELDESLLEALQDK-----GYTRPTAIQAEAIPPA--LDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILIL 79 (434)
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEE
Confidence 4789999999998 9999999999 99998 66999999999999999998554431 2478999
Q ss_pred ccHHHHHHHHHHHHHhc----CCceeEeeCCeecc------cCCCceEEEceeecc--------ccCCccEEEEecCccc
Q 010836 108 GPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQML 169 (499)
Q Consensus 108 ~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~ 169 (499)
+||++||.|+++.+..+ ++++..++|+.... ..+.+++|+||+.+. .+.++++|||||||++
T Consensus 80 ~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~ 159 (434)
T PRK11192 80 TPTRELAMQVADQARELAKHTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRM 159 (434)
T ss_pred CCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHH
Confidence 99999999999887753 67888888865321 235679999995442 2478999999999999
Q ss_pred CCCCCChhHHHHHhccccccceEeecCCCc--hHHHHHHHHcCC-eEEEEeeeec-------------CCCCcccccccc
Q 010836 170 GCKTRGFSFTRALLGICANELHLCGDPAAV--PLIQQILQVTGD-DVKVQSYERL-------------SPLVPLNVPLGS 233 (499)
Q Consensus 170 ~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~--~~~~~l~~~~~~-~~~~~~~~~~-------------~~~~~~~~~l~~ 233 (499)
.+..++.........+. ...+++..+++. +.+..+...... ...+...... .........+..
T Consensus 160 l~~~~~~~~~~i~~~~~-~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~~~~~~k~~~l~~ 238 (434)
T PRK11192 160 LDMGFAQDIETIAAETR-WRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYRADDLEHKTALLCH 238 (434)
T ss_pred hCCCcHHHHHHHHHhCc-cccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEEeCCHHHHHHHHHH
Confidence 86533333333333332 233444455544 345555554322 1222111000 000001111111
Q ss_pred c-cccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-cc
Q 010836 234 F-SNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-IS 310 (499)
Q Consensus 234 l-~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~ 310 (499)
+ .....+.+|||+ ++..++.+++.|.+.+. .+..+||++++++|..+++.|++ |+++|||||+++++|+|+| ++
T Consensus 239 l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~-~~~~l~g~~~~~~R~~~l~~f~~--G~~~vLVaTd~~~~GiDip~v~ 315 (434)
T PRK11192 239 LLKQPEVTRSIVFVRTRERVHELAGWLRKAGI-NCCYLEGEMVQAKRNEAIKRLTD--GRVNVLVATDVAARGIDIDDVS 315 (434)
T ss_pred HHhcCCCCeEEEEeCChHHHHHHHHHHHhCCC-CEEEecCCCCHHHHHHHHHHHhC--CCCcEEEEccccccCccCCCCC
Confidence 2 222345667777 89999999999998766 89999999999999999999999 9999999999999999997 99
Q ss_pred EEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC
Q 010836 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 311 ~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~ 358 (499)
+||+++. |.+...|+||+||+||.|.. |.++.+...
T Consensus 316 ~VI~~d~---------p~s~~~yiqr~GR~gR~g~~---g~ai~l~~~ 351 (434)
T PRK11192 316 HVINFDM---------PRSADTYLHRIGRTGRAGRK---GTAISLVEA 351 (434)
T ss_pred EEEEECC---------CCCHHHHhhcccccccCCCC---ceEEEEecH
Confidence 9999998 77999999999999999987 777666543
No 19
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=4.7e-39 Score=340.60 Aligned_cols=296 Identities=19% Similarity=0.215 Sum_probs=217.2
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEEEEccHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLR 111 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~-------~~~~l~l~P~r 111 (499)
.+++.+.+++.+. ||..|+++|+ ++|.+ +++++++++||||||||+++..+++. ..++||++||+
T Consensus 12 ~L~~~ll~al~~~-----G~~~ptpiQ~~ai~~l--l~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTr 84 (629)
T PRK11634 12 GLKAPILEALNDL-----GYEKPSPIQAECIPHL--LNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTR 84 (629)
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--HcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcH
Confidence 3889999999988 9999999999 99998 56999999999999999998655532 34789999999
Q ss_pred HHHHHHHHHHHhc-----CCceeEeeCCeecc------cCCCceEEEceeec-c-------ccCCccEEEEecCcccCCC
Q 010836 112 LLAWEVAKRLNKA-----NVSCDLITGQEREE------VDGAKHRAVTVEMA-D-------VVSDYDCAVIDEIQMLGCK 172 (499)
Q Consensus 112 ~La~q~~~~l~~~-----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~-~-------~l~~~~~iViDEah~~~~~ 172 (499)
+||.|+++.+.++ ++.+..++|+.... ..+..++|+||+.+ + .+++++++||||||++++.
T Consensus 85 eLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~ 164 (629)
T PRK11634 85 ELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRM 164 (629)
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhc
Confidence 9999999888754 67777777765321 23578999999554 2 2578999999999999865
Q ss_pred CCChh--HHHHHhccccccceEeecCCCchHHHHHHHHc-CCeEEEEeeeecCC------------CCcccccc-ccccc
Q 010836 173 TRGFS--FTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKVQSYERLSP------------LVPLNVPL-GSFSN 236 (499)
Q Consensus 173 ~~g~~--~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~------------~~~~~~~l-~~l~~ 236 (499)
|+. +..++-.++.....++.+.+..+.+..+.... .+...+........ .......+ ..+..
T Consensus 165 --gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~~~~k~~~L~~~L~~ 242 (629)
T PRK11634 165 --GFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFLEA 242 (629)
T ss_pred --ccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEechhhHHHHHHHHHHh
Confidence 543 33334344433333333333334444444332 22221111000000 00011111 11222
Q ss_pred cCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEE
Q 010836 237 IQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIF 314 (499)
Q Consensus 237 ~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~ 314 (499)
.....+|||+ |+..++++++.|.+.+. .+..+||+|++++|..+++.|++ |+.+|||||+++++|||+| |++||+
T Consensus 243 ~~~~~~IVF~~tk~~a~~l~~~L~~~g~-~~~~lhgd~~q~~R~~il~~Fr~--G~~~ILVATdv~arGIDip~V~~VI~ 319 (629)
T PRK11634 243 EDFDAAIIFVRTKNATLEVAEALERNGY-NSAALNGDMNQALREQTLERLKD--GRLDILIATDVAARGLDVERISLVVN 319 (629)
T ss_pred cCCCCEEEEeccHHHHHHHHHHHHhCCC-CEEEeeCCCCHHHHHHHHHHHhC--CCCCEEEEcchHhcCCCcccCCEEEE
Confidence 2345567766 99999999999998876 89999999999999999999999 9999999999999999997 999999
Q ss_pred cccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 315 ~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
++. |.+..+|+||+|||||.|.. |.++++..+.
T Consensus 320 ~d~---------P~~~e~yvqRiGRtGRaGr~---G~ai~~v~~~ 352 (629)
T PRK11634 320 YDI---------PMDSESYVHRIGRTGRAGRA---GRALLFVENR 352 (629)
T ss_pred eCC---------CCCHHHHHHHhccccCCCCc---ceEEEEechH
Confidence 999 77999999999999999987 7777776543
No 20
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.5e-38 Score=341.44 Aligned_cols=303 Identities=18% Similarity=0.180 Sum_probs=220.0
Q ss_pred HHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHH-HHHHHcCCCEEEEccHHHHHHHHHHH
Q 010836 43 VIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA-LSRLESSSSGIYCGPLRLLAWEVAKR 120 (499)
Q Consensus 43 ~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~-l~~l~~~~~~l~l~P~r~La~q~~~~ 120 (499)
..+...++.. ||+..+++.|. +++.+ +.++++++++|||+|||++| +..|...+.+|||+|+++|+.++...
T Consensus 446 ~~L~~~lk~~----FG~~sFRp~Q~eaI~ai--L~GrDVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmqDQV~~ 519 (1195)
T PLN03137 446 KKLEVNNKKV----FGNHSFRPNQREIINAT--MSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMN 519 (1195)
T ss_pred HHHHHHHHHH----cCCCCCCHHHHHHHHHH--HcCCCEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHH
Confidence 4444445443 69999999999 99988 67999999999999999998 45556678899999999999988888
Q ss_pred HHhcCCceeEeeCCeecc------------cCCCceEEEceeecc---c----------cCCccEEEEecCcccCCCCCC
Q 010836 121 LNKANVSCDLITGQEREE------------VDGAKHRAVTVEMAD---V----------VSDYDCAVIDEIQMLGCKTRG 175 (499)
Q Consensus 121 l~~~g~~~~~~~g~~~~~------------~~~~~~iv~T~e~~~---~----------l~~~~~iViDEah~~~~~~~g 175 (499)
+...|+++..+.|..... .....++++|||.+. . ...+.+|||||||+++ +||
T Consensus 520 L~~~GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVS--qWG 597 (1195)
T PLN03137 520 LLQANIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVS--QWG 597 (1195)
T ss_pred HHhCCCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhh--hcc
Confidence 888899998887753211 135689999998752 1 1448999999999998 678
Q ss_pred hhHHHH------Hhc-cccccceEeecCCCchHHHHHHHHcCCe---EEEEeeeecC------CCC-cccccc-ccccc-
Q 010836 176 FSFTRA------LLG-ICANELHLCGDPAAVPLIQQILQVTGDD---VKVQSYERLS------PLV-PLNVPL-GSFSN- 236 (499)
Q Consensus 176 ~~~~~~------ll~-l~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~------~~~-~~~~~l-~~l~~- 236 (499)
+.|... +.. +....+..+.++++......+....+.. .....+.+.. +.. .....+ ..+..
T Consensus 598 hDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~kk~le~L~~~I~~~ 677 (1195)
T PLN03137 598 HDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIKEN 677 (1195)
T ss_pred cchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCccceEEEEeccchhHHHHHHHHHHhc
Confidence 665432 111 2233444455555544555555544321 1111111111 000 000011 11111
Q ss_pred cCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEE
Q 010836 237 IQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIF 314 (499)
Q Consensus 237 ~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~ 314 (499)
......|||+ |+++++.+++.|.+.+. .+..+||+|++++|..+++.|.+ |+++|||||++++||||+| |++||+
T Consensus 678 ~~~esgIIYC~SRke~E~LAe~L~~~Gi-ka~~YHAGLs~eeR~~vqe~F~~--Gei~VLVATdAFGMGIDkPDVR~VIH 754 (1195)
T PLN03137 678 HFDECGIIYCLSRMDCEKVAERLQEFGH-KAAFYHGSMDPAQRAFVQKQWSK--DEINIICATVAFGMGINKPDVRFVIH 754 (1195)
T ss_pred ccCCCceeEeCchhHHHHHHHHHHHCCC-CeeeeeCCCCHHHHHHHHHHHhc--CCCcEEEEechhhcCCCccCCcEEEE
Confidence 1123344444 99999999999998877 99999999999999999999999 9999999999999999997 999999
Q ss_pred cccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC-HHHHHhhhC
Q 010836 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED-LPLLHKSLL 368 (499)
Q Consensus 315 ~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~-~~~~~~~~~ 368 (499)
+++ |.+...|+||+|||||.|.. |.|+.++... ...++.++.
T Consensus 755 ydl---------PkSiEsYyQriGRAGRDG~~---g~cILlys~~D~~~~~~lI~ 797 (1195)
T PLN03137 755 HSL---------PKSIEGYHQECGRAGRDGQR---SSCVLYYSYSDYIRVKHMIS 797 (1195)
T ss_pred cCC---------CCCHHHHHhhhcccCCCCCC---ceEEEEecHHHHHHHHHHHh
Confidence 999 66999999999999999987 8998887653 344455554
No 21
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.2e-38 Score=329.84 Aligned_cols=298 Identities=17% Similarity=0.122 Sum_probs=217.3
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----c----------CCCE
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S----------SSSG 104 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~----~----------~~~~ 104 (499)
.+++.+.+++.+. ||..++++|. +++.+ ++++|+++++|||||||++|+.+++ + ..++
T Consensus 93 ~l~~~l~~~l~~~-----g~~~~~~iQ~~ai~~~--~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~a 165 (475)
T PRK01297 93 NLAPELMHAIHDL-----GFPYCTPIQAQVLGYT--LAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRA 165 (475)
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceE
Confidence 4899999999988 9999999999 99998 6699999999999999999865543 2 2478
Q ss_pred EEEccHHHHHHHHHHHHHhc----CCceeEeeCCeec-------ccCCCceEEEceeecc--------ccCCccEEEEec
Q 010836 105 IYCGPLRLLAWEVAKRLNKA----NVSCDLITGQERE-------EVDGAKHRAVTVEMAD--------VVSDYDCAVIDE 165 (499)
Q Consensus 105 l~l~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~-------~~~~~~~iv~T~e~~~--------~l~~~~~iViDE 165 (499)
||++||++||.|+++.++++ ++.+..++|+... ......++|+||+++. ++++++++||||
T Consensus 166 Lil~PtreLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDE 245 (475)
T PRK01297 166 LIIAPTRELVVQIAKDAAALTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDE 245 (475)
T ss_pred EEEeCcHHHHHHHHHHHHHhhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEech
Confidence 99999999999999988864 6677777775321 1235689999997652 358899999999
Q ss_pred CcccCCCCCChhHHHHHhcccc-ccceEeecCCCc-hHHHHHHH-HcCCeEEEEeeeecCC------------CCccccc
Q 010836 166 IQMLGCKTRGFSFTRALLGICA-NELHLCGDPAAV-PLIQQILQ-VTGDDVKVQSYERLSP------------LVPLNVP 230 (499)
Q Consensus 166 ah~~~~~~~g~~~~~~ll~l~~-~~~~~~~~~~~~-~~~~~l~~-~~~~~~~~~~~~~~~~------------~~~~~~~ 230 (499)
+|.+.+......+...+..... ...+++..+++. ..+..+.. +......+........ .......
T Consensus 246 ah~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~k~~~ 325 (475)
T PRK01297 246 ADRMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVEQHVYAVAGSDKYKL 325 (475)
T ss_pred HHHHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCcccEEEEEecchhHHHH
Confidence 9999865222223344333322 123444444443 33333333 2222222111000000 0000011
Q ss_pred cc-cccccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc
Q 010836 231 LG-SFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308 (499)
Q Consensus 231 l~-~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip 308 (499)
+. .+......++|||+ +++.++.+++.|.+.+. .+..+||++++++|.++++.|++ |+++|||||+++++|||+|
T Consensus 326 l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~-~~~~~~g~~~~~~R~~~~~~Fr~--G~~~vLvaT~~l~~GIDi~ 402 (475)
T PRK01297 326 LYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGI-NAAQLSGDVPQHKRIKTLEGFRE--GKIRVLVATDVAGRGIHID 402 (475)
T ss_pred HHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCC-CEEEEECCCCHHHHHHHHHHHhC--CCCcEEEEccccccCCccc
Confidence 11 11222334677777 89999999999988776 89999999999999999999999 9999999999999999997
Q ss_pred -ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 309 -ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 309 -v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
+++||+++. |.+..+|+||+||+||.|.+ |.++.+..++
T Consensus 403 ~v~~VI~~~~---------P~s~~~y~Qr~GRaGR~g~~---g~~i~~~~~~ 442 (475)
T PRK01297 403 GISHVINFTL---------PEDPDDYVHRIGRTGRAGAS---GVSISFAGED 442 (475)
T ss_pred CCCEEEEeCC---------CCCHHHHHHhhCccCCCCCC---ceEEEEecHH
Confidence 999999999 77999999999999999987 8887776655
No 22
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-39 Score=321.76 Aligned_cols=355 Identities=21% Similarity=0.274 Sum_probs=267.7
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcCC-----C-EEEEccHHHHHHHHHHHHHh-cCCceeEeeCCeeccc----CCCce
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLESSS-----S-GIYCGPLRLLAWEVAKRLNK-ANVSCDLITGQEREEV----DGAKH 144 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~~~-----~-~l~l~P~r~La~q~~~~l~~-~g~~~~~~~g~~~~~~----~~~~~ 144 (499)
.+++++|.|.||||||++.+|.|.++| + +-+.+|+|..|..++.++++ +|++.+--.|...+.. ..+.+
T Consensus 279 e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eVGYsIRFEdcTSekTvl 358 (902)
T KOG0923|consen 279 EHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEVGYSIRFEDCTSEKTVL 358 (902)
T ss_pred hCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccccceEEEeccccCcceee
Confidence 489999999999999999999998764 3 33449999999999999984 5666555555544433 34445
Q ss_pred EEEceeec-------cccCCccEEEEecCcccCCCCCChhHHHHHhccccc------cceEeecCCCchH--HHHHH---
Q 010836 145 RAVTVEMA-------DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN------ELHLCGDPAAVPL--IQQIL--- 206 (499)
Q Consensus 145 iv~T~e~~-------~~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~------~~~~~~~~~~~~~--~~~l~--- 206 (499)
-++|-.|+ ..|..++++||||||+..-. +++|+|+.+. .+.++-++++.+- ...++
T Consensus 359 KYMTDGmLlREfL~epdLasYSViiiDEAHERTL~------TDILfgLvKDIar~RpdLKllIsSAT~DAekFS~fFDda 432 (902)
T KOG0923|consen 359 KYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLH------TDILFGLVKDIARFRPDLKLLISSATMDAEKFSAFFDDA 432 (902)
T ss_pred eeecchhHHHHHhccccccceeEEEeehhhhhhhh------hhHHHHHHHHHHhhCCcceEEeeccccCHHHHHHhccCC
Confidence 57787666 34689999999999998765 8899887653 4455666665532 22222
Q ss_pred ---HHcCCeEEEEeeeecCCCC-ccccccccc----cccCCCCEEEEe-eHHHHHHHHHHHHHc----C----CCeEEEE
Q 010836 207 ---QVTGDDVKVQSYERLSPLV-PLNVPLGSF----SNIQTGDCIVTF-SRHAIYRLKKAIESR----G----KHLCSIV 269 (499)
Q Consensus 207 ---~~~~~~~~~~~~~~~~~~~-~~~~~l~~l----~~~~~~~~iv~~-s~~~~~~l~~~L~~~----~----~~~v~~~ 269 (499)
..+|..++|..++...|.. +.+..+..+ ...+.|++++|+ .+++++...+.|.+. + ..-++++
T Consensus 433 pIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~Pi 512 (902)
T KOG0923|consen 433 PIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPI 512 (902)
T ss_pred cEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeec
Confidence 2445667777766655532 333333222 334679999999 588888777776543 2 2248999
Q ss_pred cCCCCHHHHHHHHHHhcC-CCCCccEEEecchhhcccccc-ccEEEEccccc---ccCc------cccccChhhHHhhhc
Q 010836 270 YGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAG 338 (499)
Q Consensus 270 hg~l~~~~R~~~~~~f~~-~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~---~~~~------~~~p~s~~~~~Qr~G 338 (499)
|+.||.+. +.+-|.. |+|.++|++||++++++++|+ |.+||+-+..| |++. ...|+|.++..||+|
T Consensus 513 YaNLPsel---QakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaG 589 (902)
T KOG0923|consen 513 YANLPSEL---QAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAG 589 (902)
T ss_pred cccCChHH---HHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhcc
Confidence 99999995 4555555 669999999999999999996 99999888776 6665 368999999999999
Q ss_pred cCCCCCCCCCcEEEEEEcCCCHHHHHhhhCCCCchhhhcCCCChHHHHHH----------HHhcCCCccHHHHHHHHHHh
Q 010836 339 RAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYM----------YSRLHPDSSLYGILEHFLEN 408 (499)
Q Consensus 339 RagR~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~----------~~~~~~~~~l~~~l~~~~~~ 408 (499)
||||.|+ |.||.++... .+..++-..+.|+|++.++...++.|+. |++.||..+|..+|+.+..+
T Consensus 590 RAGRtgP----GKCfRLYt~~-aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~FdFmDpPp~etL~~aLE~LyaL 664 (902)
T KOG0923|consen 590 RAGRTGP----GKCFRLYTAW-AYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHFDFLDPPPTETLLKALEQLYAL 664 (902)
T ss_pred ccCCCCC----CceEEeechh-hhhhhhccCCCcceeeccchhHHHHHHhcCcchhcccccCCCCChHHHHHHHHHHHHh
Confidence 9999999 8999999854 3445566777899999999999999996 45567889999999999999
Q ss_pred cccCCCccccChHHHHHHHHhhccCCCCHHH-HHhhhcCCCCC
Q 010836 409 AKLSENYFFANCEEVLKVATVIDQLPLRLHE-KYLFCISPVDM 450 (499)
Q Consensus 409 ~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~-~~~~~~~p~~~ 450 (499)
.+++.. ++++.+|+.|.++|.++.. ++++++.-.+|
T Consensus 665 GALn~~------GeLTk~GrrMaEfP~dPmlsKmi~as~ky~c 701 (902)
T KOG0923|consen 665 GALNHL------GELTKLGRRMAEFPVDPMLSKMIVASEKYKC 701 (902)
T ss_pred hccccc------cchhhhhhhhhhcCCCHHHHhHHhhhccccc
Confidence 999877 6899999999999985554 44444444443
No 23
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=1.2e-38 Score=310.99 Aligned_cols=333 Identities=18% Similarity=0.148 Sum_probs=246.6
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc----C-------CCEEEE
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES----S-------SSGIYC 107 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~----~-------~~~l~l 107 (499)
.++....+.|++. +|..||++|. ++|.+ ++|++|+..|-||||||++++-++++ . -.+|+|
T Consensus 75 pls~~t~kgLke~-----~fv~~teiQ~~~Ip~a--L~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalII 147 (758)
T KOG0343|consen 75 PLSQKTLKGLKEA-----KFVKMTEIQRDTIPMA--LQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALII 147 (758)
T ss_pred CCchHHHHhHhhc-----CCccHHHHHHhhcchh--ccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEe
Confidence 3667778888888 9999999999 99998 88999999999999999998655442 2 256999
Q ss_pred ccHHHHHHHHHHHHHhc----CCceeEeeCCeec-----ccCCCceEEEceeec-cc--------cCCccEEEEecCccc
Q 010836 108 GPLRLLAWEVAKRLNKA----NVSCDLITGQERE-----EVDGAKHRAVTVEMA-DV--------VSDYDCAVIDEIQML 169 (499)
Q Consensus 108 ~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~-----~~~~~~~iv~T~e~~-~~--------l~~~~~iViDEah~~ 169 (499)
.|||+||.|+++.+++. +.+++++.|+... .....+|+||||..+ .. -.++.++|+||||++
T Consensus 148 SPTRELA~QtFevL~kvgk~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~ 227 (758)
T KOG0343|consen 148 SPTRELALQTFEVLNKVGKHHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRM 227 (758)
T ss_pred cchHHHHHHHHHHHHHHhhccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHH
Confidence 99999999999999975 5678888886442 234789999999433 22 278999999999999
Q ss_pred CCCCCChh--HHHHHhccccccceEeecCCCchHHHHHHHHcCCeE-EEEee--------------eecCCCCcccccc-
Q 010836 170 GCKTRGFS--FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDV-KVQSY--------------ERLSPLVPLNVPL- 231 (499)
Q Consensus 170 ~~~~~g~~--~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~--------------~~~~~~~~~~~~l- 231 (499)
+|+ ||. +..++-.+++....++.+.+....+.+++...-.+. .+..+ +...++......+
T Consensus 228 LDM--GFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~ 305 (758)
T KOG0343|consen 228 LDM--GFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLW 305 (758)
T ss_pred HHH--hHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhhHHHHHH
Confidence 988 665 556777788888888888777788888887532222 22111 1122222222233
Q ss_pred ccccccCCCCEEEEe-eHHHHHHHHHHHHHc-CCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-
Q 010836 232 GSFSNIQTGDCIVTF-SRHAIYRLKKAIESR-GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN- 308 (499)
Q Consensus 232 ~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~-~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip- 308 (499)
..+....+...|||+ |.+++..+++.+++. .+..+..+||.|++..|.++.+.|.+ ..--||+|||+++||+|+|
T Consensus 306 sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~--~~~~vLF~TDv~aRGLDFpa 383 (758)
T KOG0343|consen 306 SFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVR--KRAVVLFCTDVAARGLDFPA 383 (758)
T ss_pred HHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHH--hcceEEEeehhhhccCCCcc
Confidence 233445566778888 899999999999875 44579999999999999999999998 7888999999999999998
Q ss_pred ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCHHHHHhhhCCCCchhhh-----cCCCChH
Q 010836 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLES-----AGLFPNF 383 (499)
Q Consensus 309 v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~-----~~l~~~~ 383 (499)
|++||++|. |.+.++|+||+||++|.+.. +...++.+.+++...+..+-...+ ++.. ..+...-
T Consensus 384 VdwViQ~DC---------Pedv~tYIHRvGRtAR~~~~-G~sll~L~psEeE~~l~~Lq~k~I-~i~~i~i~~~k~~~i~ 452 (758)
T KOG0343|consen 384 VDWVIQVDC---------PEDVDTYIHRVGRTARYKER-GESLLMLTPSEEEAMLKKLQKKKI-PIKEIKIDPEKLTSIR 452 (758)
T ss_pred cceEEEecC---------chhHHHHHHHhhhhhcccCC-CceEEEEcchhHHHHHHHHHHcCC-CHHhhccCHHHhhhHH
Confidence 999999999 88999999999999999986 444444444443444444433332 2222 2233444
Q ss_pred HHHHHHHhcCC
Q 010836 384 DLIYMYSRLHP 394 (499)
Q Consensus 384 ~~l~~~~~~~~ 394 (499)
..++++....+
T Consensus 453 ~~l~~ll~~~~ 463 (758)
T KOG0343|consen 453 NKLEALLAKDP 463 (758)
T ss_pred HHHHHHHhhCH
Confidence 55555554443
No 24
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.9e-38 Score=342.28 Aligned_cols=296 Identities=15% Similarity=0.136 Sum_probs=220.4
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----c--CCCEEEEccHHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S--SSSGIYCGPLRL 112 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~----~--~~~~l~l~P~r~ 112 (499)
.+++.+.+.+++. |+..|+++|+ ++|.+ ++++++++.+|||||||++|..+++ + +.++||++|||+
T Consensus 20 ~l~~~l~~~L~~~-----g~~~p~~~Q~~ai~~i--l~G~nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~Ptra 92 (742)
T TIGR03817 20 WAHPDVVAALEAA-----GIHRPWQHQARAAELA--HAGRHVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKA 92 (742)
T ss_pred cCCHHHHHHHHHc-----CCCcCCHHHHHHHHHH--HCCCCEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHH
Confidence 4789999999998 9999999999 99998 6699999999999999999854443 3 347899999999
Q ss_pred HHHHHHHHHHhc---CCceeEeeCCeecc-----cCCCceEEEceeecc------------ccCCccEEEEecCcccCCC
Q 010836 113 LAWEVAKRLNKA---NVSCDLITGQEREE-----VDGAKHRAVTVEMAD------------VVSDYDCAVIDEIQMLGCK 172 (499)
Q Consensus 113 La~q~~~~l~~~---g~~~~~~~g~~~~~-----~~~~~~iv~T~e~~~------------~l~~~~~iViDEah~~~~~ 172 (499)
||.|+.++++++ ++.+..++|+.... ..+..++++||+++. ++++++++||||||.+.+
T Consensus 93 La~q~~~~l~~l~~~~i~v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g- 171 (742)
T TIGR03817 93 LAADQLRAVRELTLRGVRPATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG- 171 (742)
T ss_pred HHHHHHHHHHHhccCCeEEEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-
Confidence 999999999876 46777788865431 235788899997763 257899999999999975
Q ss_pred CCChhHHHHHhcc------ccccceEeecCCCchHHHHHHHH-cCCeEEEEeee----------ecCCC--Cc-------
Q 010836 173 TRGFSFTRALLGI------CANELHLCGDPAAVPLIQQILQV-TGDDVKVQSYE----------RLSPL--VP------- 226 (499)
Q Consensus 173 ~~g~~~~~~ll~l------~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~----------~~~~~--~~------- 226 (499)
.+|..+...+..+ .....+++..+++.+....++.. .+....+.... ...+. ..
T Consensus 172 ~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 251 (742)
T TIGR03817 172 VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGARTVALWEPPLTELTGENGAP 251 (742)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCceEEEEecCCccccccccccc
Confidence 3555433332221 12345677777777665555533 33332221100 00010 00
Q ss_pred --------cccccccccccCCCCEEEEe-eHHHHHHHHHHHHHcC-------CCeEEEEcCCCCHHHHHHHHHHhcCCCC
Q 010836 227 --------LNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRG-------KHLCSIVYGSLPPETRTRQATRFNDASS 290 (499)
Q Consensus 227 --------~~~~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~-------~~~v~~~hg~l~~~~R~~~~~~f~~~~g 290 (499)
....+..+.. ...+.|+|+ |++.++.+++.+++.. ..++..+||++++++|.++++.|++ |
T Consensus 252 ~r~~~~~~~~~~l~~l~~-~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~--G 328 (742)
T TIGR03817 252 VRRSASAEAADLLADLVA-EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRD--G 328 (742)
T ss_pred cccchHHHHHHHHHHHHH-CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHc--C
Confidence 0000111111 245666666 9999999999887641 2378899999999999999999999 9
Q ss_pred CccEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC
Q 010836 291 EFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 291 ~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~ 358 (499)
++++|||||++++||||| +++||+++. |.+..+|+||+|||||.|.. |.++.+..+
T Consensus 329 ~i~vLVaTd~lerGIDI~~vd~VI~~~~---------P~s~~~y~qRiGRaGR~G~~---g~ai~v~~~ 385 (742)
T TIGR03817 329 ELLGVATTNALELGVDISGLDAVVIAGF---------PGTRASLWQQAGRAGRRGQG---ALVVLVARD 385 (742)
T ss_pred CceEEEECchHhccCCcccccEEEEeCC---------CCCHHHHHHhccccCCCCCC---cEEEEEeCC
Confidence 999999999999999997 999999999 77999999999999999987 888777654
No 25
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.5e-37 Score=330.67 Aligned_cols=307 Identities=18% Similarity=0.221 Sum_probs=219.9
Q ss_pred CcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHH-HHHHcCCCEEEEccHHHHHHHHH
Q 010836 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL-SRLESSSSGIYCGPLRLLAWEVA 118 (499)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l-~~l~~~~~~l~l~P~r~La~q~~ 118 (499)
.+....+.+++. +||..+++.|+ +++.+ +.++++++++|||+|||++|. ..+...+.+||++|+++|+.|+.
T Consensus 9 ~~~~~~~~l~~~----fG~~~~r~~Q~~ai~~i--l~g~dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv 82 (607)
T PRK11057 9 LESLAKQVLQET----FGYQQFRPGQQEIIDAV--LSGRDCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQV 82 (607)
T ss_pred chhHHHHHHHHH----cCCCCCCHHHHHHHHHH--HcCCCEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHH
Confidence 334445555543 69999999999 99988 669999999999999999984 45567788999999999999999
Q ss_pred HHHHhcCCceeEeeCCeecc----------cCCCceEEEceeeccc--------cCCccEEEEecCcccCCCCCChhHHH
Q 010836 119 KRLNKANVSCDLITGQEREE----------VDGAKHRAVTVEMADV--------VSDYDCAVIDEIQMLGCKTRGFSFTR 180 (499)
Q Consensus 119 ~~l~~~g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~~--------l~~~~~iViDEah~~~~~~~g~~~~~ 180 (499)
+.++..|+.+..+.+..... .....++++||+.+.. ..+++++||||||+++ +||+.+..
T Consensus 83 ~~l~~~gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~--~~G~~fr~ 160 (607)
T PRK11057 83 DQLLANGVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCIS--QWGHDFRP 160 (607)
T ss_pred HHHHHcCCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccc--cccCcccH
Confidence 99999999888876643221 1245788999976532 2578999999999998 55754321
Q ss_pred H------HhccccccceEeecCCCc--hHHHHHHHHcCCe---EEEEeeeecCCC-Cc--ccc----ccccccccCCCCE
Q 010836 181 A------LLGICANELHLCGDPAAV--PLIQQILQVTGDD---VKVQSYERLSPL-VP--LNV----PLGSFSNIQTGDC 242 (499)
Q Consensus 181 ~------ll~l~~~~~~~~~~~~~~--~~~~~l~~~~~~~---~~~~~~~~~~~~-~~--~~~----~l~~l~~~~~~~~ 242 (499)
. +.... ....+++.+++. .....+....+.. ..+..+.+.... .. ... .+..+.....+..
T Consensus 161 ~y~~L~~l~~~~-p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~ 239 (607)
T PRK11057 161 EYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYTLVEKFKPLDQLMRYVQEQRGKSG 239 (607)
T ss_pred HHHHHHHHHHhC-CCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCCcceeeeeeccchHHHHHHHHHhcCCCCE
Confidence 1 11111 123333433333 3333444443221 112122111100 00 001 1112222344555
Q ss_pred EEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccccc
Q 010836 243 IVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKF 320 (499)
Q Consensus 243 iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~ 320 (499)
|||+ |+++++.+++.|++.+. .+..+||+|++++|.++++.|++ |+.+|||||+++++|||+| |++||+++.
T Consensus 240 IIFc~tr~~~e~la~~L~~~g~-~v~~~Ha~l~~~~R~~i~~~F~~--g~~~VLVaT~a~~~GIDip~V~~VI~~d~--- 313 (607)
T PRK11057 240 IIYCNSRAKVEDTAARLQSRGI-SAAAYHAGLDNDVRADVQEAFQR--DDLQIVVATVAFGMGINKPNVRFVVHFDI--- 313 (607)
T ss_pred EEEECcHHHHHHHHHHHHhCCC-CEEEecCCCCHHHHHHHHHHHHC--CCCCEEEEechhhccCCCCCcCEEEEeCC---
Confidence 6666 99999999999998876 89999999999999999999999 9999999999999999997 999999999
Q ss_pred cCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC-CHHHHHhhhCCCC
Q 010836 321 DGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE-DLPLLHKSLLEPS 371 (499)
Q Consensus 321 ~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~-~~~~~~~~~~~~~ 371 (499)
|.|..+|+||+|||||.|.. |.|+.+++. +...++.+++...
T Consensus 314 ------P~s~~~y~Qr~GRaGR~G~~---~~~ill~~~~d~~~~~~~~~~~~ 356 (607)
T PRK11057 314 ------PRNIESYYQETGRAGRDGLP---AEAMLFYDPADMAWLRRCLEEKP 356 (607)
T ss_pred ------CCCHHHHHHHhhhccCCCCC---ceEEEEeCHHHHHHHHHHHhcCC
Confidence 67999999999999999987 787766654 4456666665544
No 26
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-39 Score=311.13 Aligned_cols=306 Identities=21% Similarity=0.234 Sum_probs=232.2
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc----------CCCEEEEc
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES----------SSSGIYCG 108 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~----------~~~~l~l~ 108 (499)
.|+-.+..++... ||..||++|. ++|.+ +-++|++.+|.||||||.+|..++++ .-++||++
T Consensus 187 NLSRPlLka~~~l-----Gy~~PTpIQ~a~IPva--llgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~ 259 (691)
T KOG0338|consen 187 NLSRPLLKACSTL-----GYKKPTPIQVATIPVA--LLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLV 259 (691)
T ss_pred ccchHHHHHHHhc-----CCCCCCchhhhcccHH--hhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEe
Confidence 3566778888888 9999999999 99998 55999999999999999998655543 13789999
Q ss_pred cHHHHHHHHHHHHHhc----CCceeEeeCCeecc------cCCCceEEEcee-eccc--------cCCccEEEEecCccc
Q 010836 109 PLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVE-MADV--------VSDYDCAVIDEIQML 169 (499)
Q Consensus 109 P~r~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e-~~~~--------l~~~~~iViDEah~~ 169 (499)
|||+||.|++...+++ .+.|++..|+.... -..++++|+||. +.|. +.++.++|+||||+|
T Consensus 260 PTRELaiQv~sV~~qlaqFt~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRM 339 (691)
T KOG0338|consen 260 PTRELAIQVHSVTKQLAQFTDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRM 339 (691)
T ss_pred ccHHHHHHHHHHHHHHHhhccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHH
Confidence 9999999999877753 68888888875432 236789999994 4443 478999999999999
Q ss_pred CCCCCChh--HHHHHhccccccceEeecCCCchHHHHHHHHcC-CeE--EEEee-----------eecCCC--Ccccccc
Q 010836 170 GCKTRGFS--FTRALLGICANELHLCGDPAAVPLIQQILQVTG-DDV--KVQSY-----------ERLSPL--VPLNVPL 231 (499)
Q Consensus 170 ~~~~~g~~--~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~-~~~--~~~~~-----------~~~~~~--~~~~~~l 231 (499)
++. ||+ +..++-..+.+...++.+.+..+-+++++...- ..+ .+... -|..+- ......+
T Consensus 340 Lee--gFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~~re~dRea~l 417 (691)
T KOG0338|consen 340 LEE--GFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRPKREGDREAML 417 (691)
T ss_pred HHH--HHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheeccccccccHHHH
Confidence 976 665 344454455566666777666677777775432 222 22111 111110 0011111
Q ss_pred -ccccccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-
Q 010836 232 -GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN- 308 (499)
Q Consensus 232 -~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip- 308 (499)
..+.+.-...+|||+ |++.++++.-.|--.|. ++.-+||+|++++|.+.++.|++ .+++||||||++++|+||+
T Consensus 418 ~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl-~agElHGsLtQ~QRlesL~kFk~--~eidvLiaTDvAsRGLDI~g 494 (691)
T KOG0338|consen 418 ASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGL-KAGELHGSLTQEQRLESLEKFKK--EEIDVLIATDVASRGLDIEG 494 (691)
T ss_pred HHHHHHhcccceEEEEehHHHHHHHHHHHHHhhc-hhhhhcccccHHHHHHHHHHHHh--ccCCEEEEechhhccCCccc
Confidence 122333456677777 99999999888866666 99999999999999999999999 9999999999999999995
Q ss_pred ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC-HHHHHhhhCC
Q 010836 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED-LPLLHKSLLE 369 (499)
Q Consensus 309 v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~-~~~~~~~~~~ 369 (499)
|..||||.+ |.+...|+||+||++|+|.. |..+.+..++ ...++..+..
T Consensus 495 V~tVINy~m---------P~t~e~Y~HRVGRTARAGRa---GrsVtlvgE~dRkllK~iik~ 544 (691)
T KOG0338|consen 495 VQTVINYAM---------PKTIEHYLHRVGRTARAGRA---GRSVTLVGESDRKLLKEIIKS 544 (691)
T ss_pred eeEEEeccC---------chhHHHHHHHhhhhhhcccC---cceEEEeccccHHHHHHHHhh
Confidence 999999999 77999999999999999998 8887776554 4566666655
No 27
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.7e-38 Score=307.05 Aligned_cols=298 Identities=20% Similarity=0.213 Sum_probs=223.9
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----------------cCC
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----------------SSS 102 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~----------------~~~ 102 (499)
.++.++...++.. ||..++++|. ++|.. ++++|+|.++.||||||.+++.+|+ .++
T Consensus 251 ~~P~e~l~~I~~~-----~y~eptpIqR~aipl~--lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gp 323 (673)
T KOG0333|consen 251 GFPLELLSVIKKP-----GYKEPTPIQRQAIPLG--LQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGP 323 (673)
T ss_pred CCCHHHHHHHHhc-----CCCCCchHHHhhccch--hccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCc
Confidence 5888999999998 9999999999 99987 7899999999999999998754442 246
Q ss_pred CEEEEccHHHHHHHHHHHHHhc----CCceeEeeCCeecc------cCCCceEEEceee-cc-------ccCCccEEEEe
Q 010836 103 SGIYCGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEM-AD-------VVSDYDCAVID 164 (499)
Q Consensus 103 ~~l~l~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~-~~-------~l~~~~~iViD 164 (499)
.+++++|||+||+|+.+.-.++ |+++..+.|+.... ..++.++++||.. .+ .++...++|+|
T Consensus 324 yaiilaptReLaqqIeeEt~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvld 403 (673)
T KOG0333|consen 324 YAIILAPTRELAQQIEEETNKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLD 403 (673)
T ss_pred eeeeechHHHHHHHHHHHHHHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEecc
Confidence 7899999999999999887754 67777777765433 3378899999943 33 24889999999
Q ss_pred cCcccCCCCCChhHHHHHhccccc-------------------------cceEeecCCCchHHHHHHHHcC-CeEEEE--
Q 010836 165 EIQMLGCKTRGFSFTRALLGICAN-------------------------ELHLCGDPAAVPLIQQILQVTG-DDVKVQ-- 216 (499)
Q Consensus 165 Eah~~~~~~~g~~~~~~ll~l~~~-------------------------~~~~~~~~~~~~~~~~l~~~~~-~~~~~~-- 216 (499)
||+++.|........+.|-.++.. .+.++...+..+.+..++...- ....+.
T Consensus 404 eadrmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig 483 (673)
T KOG0333|consen 404 EADRMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIG 483 (673)
T ss_pred chhhhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEec
Confidence 999999886655666666544321 1123334444566666664322 222111
Q ss_pred eeeecCCC----------Ccccccc-ccccccCCCCEEEE-eeHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHH
Q 010836 217 SYERLSPL----------VPLNVPL-GSFSNIQTGDCIVT-FSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATR 284 (499)
Q Consensus 217 ~~~~~~~~----------~~~~~~l-~~l~~~~~~~~iv~-~s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~ 284 (499)
...+..+. ......+ ..+.+.....+||| ++++.|+.+++.|.+.+. +++.+||+-++++|...++.
T Consensus 484 ~~gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~g~-~~~tlHg~k~qeQRe~aL~~ 562 (673)
T KOG0333|consen 484 SAGKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPPIIIFVNTKKGADALAKILEKAGY-KVTTLHGGKSQEQRENALAD 562 (673)
T ss_pred cCCCCccchheEEEEecchHHHHHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhccc-eEEEeeCCccHHHHHHHHHH
Confidence 11111111 1111112 22222223344544 489999999999999996 99999999999999999999
Q ss_pred hcCCCCCccEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 285 FNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 285 f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
|++ |..+||||||++++||||| |++||+|++.| +..+|.||+||+||+|+. |.++.|...+
T Consensus 563 fr~--~t~dIlVaTDvAgRGIDIpnVSlVinydmak---------sieDYtHRIGRTgRAGk~---GtaiSflt~~ 624 (673)
T KOG0333|consen 563 FRE--GTGDILVATDVAGRGIDIPNVSLVINYDMAK---------SIEDYTHRIGRTGRAGKS---GTAISFLTPA 624 (673)
T ss_pred HHh--cCCCEEEEecccccCCCCCccceeeecchhh---------hHHHHHHHhccccccccC---ceeEEEeccc
Confidence 999 9999999999999999997 99999999955 999999999999999998 8888776654
No 28
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=4.7e-38 Score=304.11 Aligned_cols=308 Identities=19% Similarity=0.181 Sum_probs=229.2
Q ss_pred CCCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHH----HHHcC------C-CEEE
Q 010836 39 ASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALS----RLESS------S-SGIY 106 (499)
Q Consensus 39 ~~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~----~l~~~------~-~~l~ 106 (499)
..+++....+++++ ||..||++|+ .+|.+ +.++|+++.|-||||||++++. ++.+. + .+++
T Consensus 87 ~~LS~~t~kAi~~~-----GF~~MT~VQ~~ti~pl--l~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlI 159 (543)
T KOG0342|consen 87 GSLSPLTLKAIKEM-----GFETMTPVQQKTIPPL--LEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLI 159 (543)
T ss_pred cccCHHHHHHHHhc-----CccchhHHHHhhcCcc--CCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEE
Confidence 46889999999999 9999999999 99988 7799999999999999999743 33322 2 4688
Q ss_pred EccHHHHHHHHHHHHHhc-----CCceeEeeCCeecc------cCCCceEEEceee-cccc--------CCccEEEEecC
Q 010836 107 CGPLRLLAWEVAKRLNKA-----NVSCDLITGQEREE------VDGAKHRAVTVEM-ADVV--------SDYDCAVIDEI 166 (499)
Q Consensus 107 l~P~r~La~q~~~~l~~~-----g~~~~~~~g~~~~~------~~~~~~iv~T~e~-~~~l--------~~~~~iViDEa 166 (499)
|+|||+||.|++..++++ ++.++++.|+.... ..+.+++|+||.. +|++ ..++++|+|||
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEA 239 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEA 239 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecc
Confidence 999999999999888853 67788888875432 3378999999944 4543 55689999999
Q ss_pred cccCCCCCChh--HHHHHhccccccceEeecCCCchHHHHHHHHc-C-CeEEEEeee--------ec------CCCCccc
Q 010836 167 QMLGCKTRGFS--FTRALLGICANELHLCGDPAAVPLIQQILQVT-G-DDVKVQSYE--------RL------SPLVPLN 228 (499)
Q Consensus 167 h~~~~~~~g~~--~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~-~-~~~~~~~~~--------~~------~~~~~~~ 228 (499)
|++++. ||. ...++-.++.....++.+.+..+-+++++... . +...+.... +. .+.....
T Consensus 240 DrlLd~--GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f 317 (543)
T KOG0342|consen 240 DRLLDI--GFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAPSDSRF 317 (543)
T ss_pred hhhhhc--ccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEeccccchH
Confidence 999977 665 45556666666666777777777777776532 2 122221111 11 1111111
Q ss_pred ccc-ccccccC-CCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccc
Q 010836 229 VPL-GSFSNIQ-TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGL 305 (499)
Q Consensus 229 ~~l-~~l~~~~-~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gi 305 (499)
..+ ..+++.. ...+|||| |...+.-+++.|+.... .|..+||+.++..|..+...|++ .+.-||||||+++||+
T Consensus 318 ~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dl-pv~eiHgk~~Q~kRT~~~~~F~k--aesgIL~cTDVaARGl 394 (543)
T KOG0342|consen 318 SLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDL-PVLEIHGKQKQNKRTSTFFEFCK--AESGILVCTDVAARGL 394 (543)
T ss_pred HHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCC-chhhhhcCCcccccchHHHHHhh--cccceEEecchhhccC
Confidence 111 2233333 37788888 78888888888875544 99999999999999999999999 8889999999999999
Q ss_pred ccc-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEE-EEcCCCHHHHHhhhCCC
Q 010836 306 NLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT-CLDSEDLPLLHKSLLEP 370 (499)
Q Consensus 306 dip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~-~~~~~~~~~~~~~~~~~ 370 (499)
|+| |++||+++. |-+..+|+||+||+||.|.. |..+ .+.+.+..+++.+-.-+
T Consensus 395 D~P~V~~VvQ~~~---------P~d~~~YIHRvGRTaR~gk~---G~alL~l~p~El~Flr~LK~lp 449 (543)
T KOG0342|consen 395 DIPDVDWVVQYDP---------PSDPEQYIHRVGRTAREGKE---GKALLLLAPWELGFLRYLKKLP 449 (543)
T ss_pred CCCCceEEEEeCC---------CCCHHHHHHHhccccccCCC---ceEEEEeChhHHHHHHHHhhCC
Confidence 998 999999999 77999999999999998876 5543 33444555555444333
No 29
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7e-38 Score=291.21 Aligned_cols=312 Identities=14% Similarity=0.145 Sum_probs=230.8
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----HcCC---CEEEEccHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSS---SGIYCGPLR 111 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l----~~~~---~~l~l~P~r 111 (499)
++.+++.+.++.+ ++..+|++|+ ++|.+ +.|+|++-+|.||||||.++..++ .+++ -++|+.|||
T Consensus 13 Gl~~Wlve~l~~l-----~i~~pTpiQ~~cIpkI--LeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTr 85 (442)
T KOG0340|consen 13 GLSPWLVEQLKAL-----GIKKPTPIQQACIPKI--LEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTR 85 (442)
T ss_pred CccHHHHHHHHHh-----cCCCCCchHhhhhHHH--hcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchH
Confidence 5789999999999 9999999999 99999 669999999999999999974444 3343 458889999
Q ss_pred HHHHHHHHHHHhc----CCceeEeeCCeecc------cCCCceEEEceeecc-c-----------cCCccEEEEecCccc
Q 010836 112 LLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD-V-----------VSDYDCAVIDEIQML 169 (499)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~-~-----------l~~~~~iViDEah~~ 169 (499)
+||.|++++|..+ ++++.+++|+.... .+.+.++++||+.+. . +.++.++|+|||+.+
T Consensus 86 ELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrv 165 (442)
T KOG0340|consen 86 ELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRV 165 (442)
T ss_pred HHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhh
Confidence 9999999999854 68888999876532 346677888886552 1 378999999999999
Q ss_pred CCCCCChhHHHHHhccccccceEeecCCCchHHHHHHHHcCC---eEEEEeeee------------cCCCCccccc----
Q 010836 170 GCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD---DVKVQSYER------------LSPLVPLNVP---- 230 (499)
Q Consensus 170 ~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~------------~~~~~~~~~~---- 230 (499)
.+....-.+....-.+++...+++.+.+..+.++.+....-. .+.+..+.. ..+....+..
T Consensus 166 L~~~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vkdaYLv~~ 245 (442)
T KOG0340|consen 166 LAGCFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVKDAYLVHL 245 (442)
T ss_pred hccchhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhhHHHHHHH
Confidence 876333334444455666656666665555666666543222 122211110 0111111111
Q ss_pred cccccccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-
Q 010836 231 LGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN- 308 (499)
Q Consensus 231 l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip- 308 (499)
+....+...+.+++|. +..+++.++..|+.... ++..+||.|++.+|...+.+|++ +..+||||||++++|+|||
T Consensus 246 Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~-r~~~lHs~m~Q~eR~~aLsrFrs--~~~~iliaTDVAsRGLDIP~ 322 (442)
T KOG0340|consen 246 LRDFENKENGSIMIFVNTTRECQLLSMTLKNLEV-RVVSLHSQMPQKERLAALSRFRS--NAARILIATDVASRGLDIPT 322 (442)
T ss_pred HhhhhhccCceEEEEeehhHHHHHHHHHHhhhce-eeeehhhcchHHHHHHHHHHHhh--cCccEEEEechhhcCCCCCc
Confidence 1222232456677666 78999999999998887 99999999999999999999999 9999999999999999998
Q ss_pred ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEc-CCCHH---HHHhhhCCCCch
Q 010836 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD-SEDLP---LLHKSLLEPSPM 373 (499)
Q Consensus 309 v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~-~~~~~---~~~~~~~~~~~~ 373 (499)
|+.|||++. |.++.+|+||+||++|+|.. |..+.+. ..|.+ .+++-+..+..+
T Consensus 323 V~LVvN~di---------Pr~P~~yiHRvGRtARAGR~---G~aiSivt~rDv~l~~aiE~~igkKl~e 379 (442)
T KOG0340|consen 323 VELVVNHDI---------PRDPKDYIHRVGRTARAGRK---GMAISIVTQRDVELLQAIEEEIGKKLTE 379 (442)
T ss_pred eeEEEecCC---------CCCHHHHHHhhcchhcccCC---cceEEEechhhHHHHHHHHHHHhccccc
Confidence 999999999 77999999999999999997 5544433 33443 444445554444
No 30
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=4.5e-37 Score=334.17 Aligned_cols=323 Identities=21% Similarity=0.258 Sum_probs=240.9
Q ss_pred CcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----H-cCCCEEEEccHHHHH
Q 010836 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----E-SSSSGIYCGPLRLLA 114 (499)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l----~-~~~~~l~l~P~r~La 114 (499)
+++.+.+.+++. |+..|+++|. +++... .+++++++++|||||||+++..++ . .++++||++|+++|+
T Consensus 8 l~~~~~~~l~~~-----g~~~l~~~Q~~ai~~~~-~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa 81 (720)
T PRK00254 8 VDERIKRVLKER-----GIEELYPPQAEALKSGV-LEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALA 81 (720)
T ss_pred CCHHHHHHHHhC-----CCCCCCHHHHHHHHHHH-hCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHH
Confidence 789999999998 9999999999 998622 678999999999999999984443 2 457899999999999
Q ss_pred HHHHHHHHh---cCCceeEeeCCeecc---cCCCceEEEceeecc--------ccCCccEEEEecCcccCCCCCChhHHH
Q 010836 115 WEVAKRLNK---ANVSCDLITGQEREE---VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTR 180 (499)
Q Consensus 115 ~q~~~~l~~---~g~~~~~~~g~~~~~---~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~~g~~~~~ 180 (499)
.|+++++.+ +|+++..++|+.... ..+.+++++||+.++ ++++++++|+||+|.+.+..+|..+..
T Consensus 82 ~q~~~~~~~~~~~g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~ 161 (720)
T PRK00254 82 EEKYREFKDWEKLGLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEM 161 (720)
T ss_pred HHHHHHHHHHhhcCCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHH
Confidence 999988874 588899999875432 235789999998764 457899999999999998888888776
Q ss_pred HHhccccccceEeecCCCchHHHHHHHHcCCeEEEEeeeecCCCCc----------ccccc--------ccccc-c-CCC
Q 010836 181 ALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP----------LNVPL--------GSFSN-I-QTG 240 (499)
Q Consensus 181 ~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~l--------~~l~~-~-~~~ 240 (499)
.+..+. ...++++.++++++..++..|.+..... ...++.++.. ..... ..+.+ . ..+
T Consensus 162 il~~l~-~~~qiI~lSATl~n~~~la~wl~~~~~~-~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 239 (720)
T PRK00254 162 ILTHML-GRAQILGLSATVGNAEELAEWLNAELVV-SDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVKKGK 239 (720)
T ss_pred HHHhcC-cCCcEEEEEccCCCHHHHHHHhCCcccc-CCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHHhCC
Confidence 665543 4578899999998888888887754321 1122222210 00000 00000 1 245
Q ss_pred CEEEEe-eHHHHHHHHHHHHHc--------------------------------CCCeEEEEcCCCCHHHHHHHHHHhcC
Q 010836 241 DCIVTF-SRHAIYRLKKAIESR--------------------------------GKHLCSIVYGSLPPETRTRQATRFND 287 (499)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~--------------------------------~~~~v~~~hg~l~~~~R~~~~~~f~~ 287 (499)
+++||+ |++.++.++..|.+. -..++.+|||+|++++|..+++.|++
T Consensus 240 ~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~ 319 (720)
T PRK00254 240 GALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFRE 319 (720)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHC
Confidence 666766 899888877666321 11259999999999999999999999
Q ss_pred CCCCccEEEecchhhccccccccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC--HHHHHh
Q 010836 288 ASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED--LPLLHK 365 (499)
Q Consensus 288 ~~g~~~iLvaT~~~~~Gidipv~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~--~~~~~~ 365 (499)
|.++|||||+++++|+|+|...||..+..+|++.+..+.+..+|+||+|||||.|.+ ..|.++.+...+ ...+++
T Consensus 320 --G~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d-~~G~~ii~~~~~~~~~~~~~ 396 (720)
T PRK00254 320 --GLIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYD-EVGEAIIVATTEEPSKLMER 396 (720)
T ss_pred --CCCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcC-CCceEEEEecCcchHHHHHH
Confidence 999999999999999999976777777777765556667889999999999998754 447776665432 245667
Q ss_pred hhCCCCchh
Q 010836 366 SLLEPSPML 374 (499)
Q Consensus 366 ~~~~~~~~i 374 (499)
++...++.+
T Consensus 397 ~~~~~pe~l 405 (720)
T PRK00254 397 YIFGKPEKL 405 (720)
T ss_pred HHhCCchhh
Confidence 765554443
No 31
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=2.5e-37 Score=339.99 Aligned_cols=373 Identities=18% Similarity=0.207 Sum_probs=256.5
Q ss_pred ccCCCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------------CC
Q 010836 37 AFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------------SS 102 (499)
Q Consensus 37 ~~~~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~-------------~~ 102 (499)
.+..+++.+.++++. +|..|+++|+ ++|.+ +++++++++||||||||++|+.+++. +.
T Consensus 14 ~~~~l~~~v~~~~~~------~~~~~tpiQ~~Ai~~i--l~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~ 85 (876)
T PRK13767 14 ILDLLRPYVREWFKE------KFGTFTPPQRYAIPLI--HEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKV 85 (876)
T ss_pred HHhhcCHHHHHHHHH------ccCCCCHHHHHHHHHH--HcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCe
Confidence 456789999999876 4889999999 99998 66999999999999999998654431 12
Q ss_pred CEEEEccHHHHHHHHHHHHHh---------------c-CCceeEeeCCeeccc------CCCceEEEceeecc-------
Q 010836 103 SGIYCGPLRLLAWEVAKRLNK---------------A-NVSCDLITGQEREEV------DGAKHRAVTVEMAD------- 153 (499)
Q Consensus 103 ~~l~l~P~r~La~q~~~~l~~---------------~-g~~~~~~~g~~~~~~------~~~~~iv~T~e~~~------- 153 (499)
++||++|+|+|+.|+++++.+ . ++.+.+.+|+..... ....++++|||.+.
T Consensus 86 ~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~ 165 (876)
T PRK13767 86 YCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPK 165 (876)
T ss_pred EEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChh
Confidence 589999999999999886541 1 456778888754321 25678899997763
Q ss_pred ---ccCCccEEEEecCcccCCCCCChhHHHHH---hccccccceEeecCCCchHHHHHHHHcCCe--------EEEEee-
Q 010836 154 ---VVSDYDCAVIDEIQMLGCKTRGFSFTRAL---LGICANELHLCGDPAAVPLIQQILQVTGDD--------VKVQSY- 218 (499)
Q Consensus 154 ---~l~~~~~iViDEah~~~~~~~g~~~~~~l---l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~~- 218 (499)
.+.++++|||||+|.+.+..||..+...+ ..+.....+.++.+++.+....+..+.+.. ..+...
T Consensus 166 ~~~~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~ 245 (876)
T PRK13767 166 FREKLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDAR 245 (876)
T ss_pred HHHHHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccC
Confidence 34789999999999999888887765443 333345677788888887766666655331 111111
Q ss_pred -eec------CCCCc----ccc-----ccccccc--cCCCCEEEEe-eHHHHHHHHHHHHHcC-----CCeEEEEcCCCC
Q 010836 219 -ERL------SPLVP----LNV-----PLGSFSN--IQTGDCIVTF-SRHAIYRLKKAIESRG-----KHLCSIVYGSLP 274 (499)
Q Consensus 219 -~~~------~~~~~----~~~-----~l~~l~~--~~~~~~iv~~-s~~~~~~l~~~L~~~~-----~~~v~~~hg~l~ 274 (499)
.+. .+... ... ....+.+ ...++++||+ |++.++.++..|.+.. ...+..+||+++
T Consensus 246 ~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~ls 325 (876)
T PRK13767 246 FVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIKEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAHHSSLS 325 (876)
T ss_pred CCccceEEEeccCccccccccchhHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeeeeCCCC
Confidence 000 01000 000 0011111 1245566666 8999999999998742 247999999999
Q ss_pred HHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEE
Q 010836 275 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVT 353 (499)
Q Consensus 275 ~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~ 353 (499)
+++|..+++.|++ |+.+|||||+++++|||+| +++||+++. |.+..+|+||+||+||.+...+.|.++
T Consensus 326 ~~~R~~ve~~fk~--G~i~vLVaTs~Le~GIDip~Vd~VI~~~~---------P~sv~~ylQRiGRaGR~~g~~~~g~ii 394 (876)
T PRK13767 326 REVRLEVEEKLKR--GELKVVVSSTSLELGIDIGYIDLVVLLGS---------PKSVSRLLQRIGRAGHRLGEVSKGRII 394 (876)
T ss_pred HHHHHHHHHHHHc--CCCeEEEECChHHhcCCCCCCcEEEEeCC---------CCCHHHHHHhcccCCCCCCCCCcEEEE
Confidence 9999999999999 9999999999999999997 999999998 679999999999999975444669988
Q ss_pred EEcCCCHH----HHHhhhCCCCchhhh--cCCCChHHHHHHHHhcCCCccHHHHHHHHHHhcccCCCccccChHHHHHHH
Q 010836 354 CLDSEDLP----LLHKSLLEPSPMLES--AGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVA 427 (499)
Q Consensus 354 ~~~~~~~~----~~~~~~~~~~~~i~~--~~l~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 427 (499)
.....+.. ..+.+.+...+.+.. ..+.-...++...... ...+..++.+.+.... .|...+.+++..+.
T Consensus 395 ~~~~~~l~e~~~~~~~~~~~~ie~~~~~~~~~dvl~q~i~~~~~~-~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~l 469 (876)
T PRK13767 395 VVDRDDLVECAVLLKKAREGKIDRVHIPKNPLDVLAQHIVGMAIE-RPWDIEEAYNIVRRAY----PYRDLSDEDFESVL 469 (876)
T ss_pred EcCchhHHHHHHHHHHHHhCCCCCCCCCCCcHHHHHHHHHHHHHc-CCCCHHHHHHHHhccC----CcccCCHHHHHHHH
Confidence 87665531 233344444443221 1122233444444333 3456666665555432 33333446677777
Q ss_pred HhhccC
Q 010836 428 TVIDQL 433 (499)
Q Consensus 428 ~~l~~~ 433 (499)
++|.+-
T Consensus 470 ~~l~~~ 475 (876)
T PRK13767 470 RYLAGD 475 (876)
T ss_pred HHHhcc
Confidence 777553
No 32
>COG1204 Superfamily II helicase [General function prediction only]
Probab=100.00 E-value=7.4e-38 Score=334.16 Aligned_cols=328 Identities=23% Similarity=0.299 Sum_probs=250.0
Q ss_pred CCCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----Hc-CCCEEEEccHHH
Q 010836 39 ASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ES-SSSGIYCGPLRL 112 (499)
Q Consensus 39 ~~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l----~~-~~~~l~l~P~r~ 112 (499)
..+++.+.+.++.. ++.++.++|+ ++.... .+++|+++++|||||||++|+.++ .+ +++++|++|+++
T Consensus 14 ~~~~~~v~~i~~~~-----~~~el~~~qq~av~~~~-~~~~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkA 87 (766)
T COG1204 14 VKLDDRVLEILKGD-----GIDELFNPQQEAVEKGL-LSDENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKA 87 (766)
T ss_pred ccccHHHHHHhccC-----ChHHhhHHHHHHhhccc-cCCCcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHH
Confidence 34788889999888 8878877777 544443 448999999999999999985554 34 479999999999
Q ss_pred HHHHHHHHHH---hcCCceeEeeCCeecc---cCCCceEEEceeeccc--------cCCccEEEEecCcccCCCCCChhH
Q 010836 113 LAWEVAKRLN---KANVSCDLITGQEREE---VDGAKHRAVTVEMADV--------VSDYDCAVIDEIQMLGCKTRGFSF 178 (499)
Q Consensus 113 La~q~~~~l~---~~g~~~~~~~g~~~~~---~~~~~~iv~T~e~~~~--------l~~~~~iViDEah~~~~~~~g~~~ 178 (499)
||.|.+++++ .+|++|...||+.... ..+..++|+|+|+++. ...++++||||+|.+.+..||+..
T Consensus 88 La~Ek~~~~~~~~~~GirV~~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~l 167 (766)
T COG1204 88 LAEEKYEEFSRLEELGIRVGISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVL 167 (766)
T ss_pred HHHHHHHHhhhHHhcCCEEEEecCCcccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCcee
Confidence 9999999998 6899999999987643 4688999999999973 468999999999999998899997
Q ss_pred HHHHhccccc--cceEeecCCCchHHHHHHHHcCCeEEEEeeeecCCCCcc-------------cc---------cccc-
Q 010836 179 TRALLGICAN--ELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPL-------------NV---------PLGS- 233 (499)
Q Consensus 179 ~~~ll~l~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-------------~~---------~l~~- 233 (499)
..++..+... .+++++.++++++..+++.|.+.+... ...++.++... .. .+..
T Consensus 168 E~iv~r~~~~~~~~rivgLSATlpN~~evA~wL~a~~~~-~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v 246 (766)
T COG1204 168 ESIVARMRRLNELIRIVGLSATLPNAEEVADWLNAKLVE-SDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELV 246 (766)
T ss_pred hhHHHHHHhhCcceEEEEEeeecCCHHHHHHHhCCcccc-cCCCCcccccCCccceEEEEecCccccccccchHHHHHHH
Confidence 7666544332 389999999999999999999876542 22222221110 00 0000
Q ss_pred cccc-CCCCEEEEe-eHHHHHHHHHHHHHc------------------------------------CCCeEEEEcCCCCH
Q 010836 234 FSNI-QTGDCIVTF-SRHAIYRLKKAIESR------------------------------------GKHLCSIVYGSLPP 275 (499)
Q Consensus 234 l~~~-~~~~~iv~~-s~~~~~~l~~~L~~~------------------------------------~~~~v~~~hg~l~~ 275 (499)
+... ..+++++|+ |++.+...++.+.+. -...+++||++|+.
T Consensus 247 ~~~~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~ 326 (766)
T COG1204 247 LESLAEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPR 326 (766)
T ss_pred HHHHhcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCH
Confidence 0111 355677777 899998888888731 01248899999999
Q ss_pred HHHHHHHHHhcCCCCCccEEEecchhhccccccccEEEEcccccccC-ccccccChhhHHhhhccCCCCCCC-CCcEEEE
Q 010836 276 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDG-VELRDLTVPEVKQIAGRAGRYGSK-FPVGEVT 353 (499)
Q Consensus 276 ~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidipv~~VI~~~~~~~~~-~~~~p~s~~~~~Qr~GRagR~g~~-~~~g~~~ 353 (499)
++|..+++.|+. |.++|||||++++.|+|+|.++||..+..+|++ .+..+++..+++|+.|||||.|-+ ++.+.++
T Consensus 327 ~~R~~vE~~Fr~--g~ikVlv~TpTLA~GVNLPA~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~ 404 (766)
T COG1204 327 EDRQLVEDAFRK--GKIKVLVSTPTLAAGVNLPARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIIL 404 (766)
T ss_pred HHHHHHHHHHhc--CCceEEEechHHhhhcCCcceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEE
Confidence 999999999999 999999999999999999999999999999994 357889999999999999999976 3334444
Q ss_pred EEcCCCHH-HHHhhhCCCCchhh
Q 010836 354 CLDSEDLP-LLHKSLLEPSPMLE 375 (499)
Q Consensus 354 ~~~~~~~~-~~~~~~~~~~~~i~ 375 (499)
....++.. ....+.....+++.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~e~~~ 427 (766)
T COG1204 405 ATSHDELEYLAELYIQSEPEPIE 427 (766)
T ss_pred ecCccchhHHHHHhhccCcchHH
Confidence 43333333 33345555555433
No 33
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=2e-37 Score=317.19 Aligned_cols=298 Identities=16% Similarity=0.154 Sum_probs=215.2
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-------cCCCEEEEccHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-------SSSSGIYCGPLR 111 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~-------~~~~~l~l~P~r 111 (499)
.+++.+.+.+... ||..|+++|. +++.+ +++++++++||||||||++|+.++. ...++||++|++
T Consensus 34 ~l~~~~~~~l~~~-----~~~~~~~~Q~~ai~~i--~~~~d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~ 106 (401)
T PTZ00424 34 KLNEDLLRGIYSY-----GFEKPSAIQQRGIKPI--LDGYDTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTR 106 (401)
T ss_pred CCCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCH
Confidence 3888899999887 9999999999 99998 6699999999999999999865443 234789999999
Q ss_pred HHHHHHHHHHHhc----CCceeEeeCCeec------ccCCCceEEEceeecc--------ccCCccEEEEecCcccCCCC
Q 010836 112 LLAWEVAKRLNKA----NVSCDLITGQERE------EVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKT 173 (499)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~g~~~~------~~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~ 173 (499)
+|+.|+.+.+..+ +..+....|+... ...+..++++||+.+. .+.+++++||||||++.+..
T Consensus 107 ~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~ 186 (401)
T PTZ00424 107 ELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRG 186 (401)
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcc
Confidence 9999999888765 3455555665421 1234689999997642 36889999999999998542
Q ss_pred CChhHHHHHhccccccceEeecCCCchH-HHHHHHH-cCCeEEEEeeeecCCCC-------------cccccc-cccccc
Q 010836 174 RGFSFTRALLGICANELHLCGDPAAVPL-IQQILQV-TGDDVKVQSYERLSPLV-------------PLNVPL-GSFSNI 237 (499)
Q Consensus 174 ~g~~~~~~ll~l~~~~~~~~~~~~~~~~-~~~l~~~-~~~~~~~~~~~~~~~~~-------------~~~~~l-~~l~~~ 237 (499)
++..+...+..+ ....++++.+++.+. ...+... ......+.......... .....+ ..+...
T Consensus 187 ~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 265 (401)
T PTZ00424 187 FKGQIYDVFKKL-PPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFYVAVEKEEWKFDTLCDLYETL 265 (401)
T ss_pred hHHHHHHHHhhC-CCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEEEecChHHHHHHHHHHHHHhc
Confidence 222233333333 334555665555432 2222221 12211111100000000 000111 111222
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEc
Q 010836 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFS 315 (499)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~ 315 (499)
...++++|+ +++.++.+++.|.+.+. .+..+||++++++|..+++.|++ |+++|||||+++++|+|+| +++||++
T Consensus 266 ~~~~~ivF~~t~~~~~~l~~~l~~~~~-~~~~~h~~~~~~~R~~i~~~f~~--g~~~vLvaT~~l~~GiDip~v~~VI~~ 342 (401)
T PTZ00424 266 TITQAIIYCNTRRKVDYLTKKMHERDF-TVSCMHGDMDQKDRDLIMREFRS--GSTRVLITTDLLARGIDVQQVSLVINY 342 (401)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHHCCC-cEEEEeCCCCHHHHHHHHHHHHc--CCCCEEEEcccccCCcCcccCCEEEEE
Confidence 344566666 89999999999988766 89999999999999999999999 9999999999999999997 9999999
Q ss_pred ccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCH
Q 010836 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL 360 (499)
Q Consensus 316 ~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~ 360 (499)
+. |.+..+|+||+||+||.|.. |.|+.+..++.
T Consensus 343 ~~---------p~s~~~y~qr~GRagR~g~~---G~~i~l~~~~~ 375 (401)
T PTZ00424 343 DL---------PASPENYIHRIGRSGRFGRK---GVAINFVTPDD 375 (401)
T ss_pred CC---------CCCHHHEeecccccccCCCC---ceEEEEEcHHH
Confidence 98 77999999999999999987 88888876653
No 34
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1e-37 Score=310.42 Aligned_cols=365 Identities=22% Similarity=0.280 Sum_probs=274.2
Q ss_pred cchHHHhcCCceEEEEccCCccHHHHHHHHHHcCC---C-EEEE-ccHHHHHHHHHHHHHh-cCCceeEeeCCeec----
Q 010836 68 WYPLARKKVRKVILHVGPTNSGKTHQALSRLESSS---S-GIYC-GPLRLLAWEVAKRLNK-ANVSCDLITGQERE---- 137 (499)
Q Consensus 68 ~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~~~---~-~l~l-~P~r~La~q~~~~l~~-~g~~~~~~~g~~~~---- 137 (499)
.+..++ .++.++|+|+||||||++..+.|.+.| . .|.| +|+|..|..+++++++ +|...+.-.|...+
T Consensus 364 ll~~ir--~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdv 441 (1042)
T KOG0924|consen 364 LLSVIR--ENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDV 441 (1042)
T ss_pred HHHHHh--hCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeec
Confidence 444453 499999999999999999999998765 2 2444 9999999999999984 55555444454433
Q ss_pred ccCCCceEEEceeec-------cccCCccEEEEecCcccCCCCCChhHHHHHhcccc------ccceEeecCCCchHHHH
Q 010836 138 EVDGAKHRAVTVEMA-------DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA------NELHLCGDPAAVPLIQQ 204 (499)
Q Consensus 138 ~~~~~~~iv~T~e~~-------~~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~------~~~~~~~~~~~~~~~~~ 204 (499)
..+++.+-++|-.++ ..|.++++||+||||+.+-. +++++|+.+ ..+.++-.+++.+ .++
T Consensus 442 T~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslN------tDilfGllk~~larRrdlKliVtSATm~-a~k 514 (1042)
T KOG0924|consen 442 TSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLN------TDILFGLLKKVLARRRDLKLIVTSATMD-AQK 514 (1042)
T ss_pred CCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccc------hHHHHHHHHHHHHhhccceEEEeecccc-HHH
Confidence 334556667887544 35789999999999999876 888888764 3455665555543 223
Q ss_pred HHHHc---------CCeEEEEeeeecCCCCcc-ccc----cccccccCCCCEEEEe-eHHHHHHHHHHHHH----c---C
Q 010836 205 ILQVT---------GDDVKVQSYERLSPLVPL-NVP----LGSFSNIQTGDCIVTF-SRHAIYRLKKAIES----R---G 262 (499)
Q Consensus 205 l~~~~---------~~~~~~~~~~~~~~~~~~-~~~----l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~----~---~ 262 (499)
+.... |..+++...+...|.+.- +.. +.......+|+++||. .+++++..+..+.+ . +
T Consensus 515 f~nfFgn~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~ 594 (1042)
T KOG0924|consen 515 FSNFFGNCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAP 594 (1042)
T ss_pred HHHHhCCCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCC
Confidence 33333 345555554444443221 222 2222334679999998 46666655554443 2 2
Q ss_pred --CCeEEEEcCCCCHHHHHHHHHHhcC-CCCCccEEEecchhhcccccc-ccEEEEccccc---ccCc------cccccC
Q 010836 263 --KHLCSIVYGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLT 329 (499)
Q Consensus 263 --~~~v~~~hg~l~~~~R~~~~~~f~~-~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~---~~~~------~~~p~s 329 (499)
...|.++|+.||.. .+.+-|.. +.|.+++||||++++++++|| |.+||+.+..| |++. ...|+|
T Consensus 595 ~~~L~vlpiYSQLp~d---lQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS 671 (1042)
T KOG0924|consen 595 TTDLAVLPIYSQLPAD---LQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPIS 671 (1042)
T ss_pred CCceEEEeehhhCchh---hhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEech
Confidence 45799999999998 55566664 558999999999999999997 99999988876 6654 578999
Q ss_pred hhhHHhhhccCCCCCCCCCcEEEEEEcCCCHHHHHhhhCCCCchhhhcCCCChHHHHHH----------HHhcCCCccHH
Q 010836 330 VPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYM----------YSRLHPDSSLY 399 (499)
Q Consensus 330 ~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~----------~~~~~~~~~l~ 399 (499)
.++..||+|||||.|+ |.||.+|.++ .+.++++..+.|+|++.++...+++|+. |.+.|++.++.
T Consensus 672 ~AnA~QRaGRAGRt~p----G~cYRlYTe~-ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~Pped~~~ 746 (1042)
T KOG0924|consen 672 QANADQRAGRAGRTGP----GTCYRLYTED-AYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDPPPEDNLL 746 (1042)
T ss_pred hccchhhccccCCCCC----cceeeehhhh-HHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCCCcCCCCHHHHHH
Confidence 9999999999999999 9999999875 4667899999999999999999999986 44567788888
Q ss_pred HHHHHHHHhcccCCCccccChHHHHHHHHhhccCCCCHHH-HHhhhcCCCCCCChHH
Q 010836 400 GILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHE-KYLFCISPVDMNDDIS 455 (499)
Q Consensus 400 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~-~~~~~~~p~~~~~~~~ 455 (499)
..+-.+..+.+++.. +.++.+|..|.++||++.. ++++..+-+.|.++.+
T Consensus 747 ~sly~Lw~LGAl~~~------g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEil 797 (1042)
T KOG0924|consen 747 NSLYQLWTLGALDNT------GQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEIL 797 (1042)
T ss_pred HHHHHHHHhhccccC------CccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHH
Confidence 888888888888765 6799999999999998876 8888888888877765
No 35
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5e-37 Score=298.81 Aligned_cols=313 Identities=19% Similarity=0.149 Sum_probs=208.9
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------------CCCEE
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------------SSSGI 105 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~-------------~~~~l 105 (499)
.+++.+...+... .++..||.+|. ++|.+ ++++|++|.++||||||++|+.++.+ +.-++
T Consensus 142 GL~~~lv~~L~~~----m~i~~pTsVQkq~IP~l--L~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~AL 215 (708)
T KOG0348|consen 142 GLHPHLVSHLNTK----MKISAPTSVQKQAIPVL--LEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYAL 215 (708)
T ss_pred CCCHHHHHHHHHH----hccCccchHhhcchhhh--hcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEE
Confidence 5788888887655 38999999999 99999 66999999999999999999766532 23569
Q ss_pred EEccHHHHHHHHHHHHHhcC------CceeEeeCCeeccc------CCCceEEEcee-eccc--------cCCccEEEEe
Q 010836 106 YCGPLRLLAWEVAKRLNKAN------VSCDLITGQEREEV------DGAKHRAVTVE-MADV--------VSDYDCAVID 164 (499)
Q Consensus 106 ~l~P~r~La~q~~~~l~~~g------~~~~~~~g~~~~~~------~~~~~iv~T~e-~~~~--------l~~~~~iViD 164 (499)
|++|||+||.|+|+.++++- +++.+ .|++++.. .+.++++.||. .+|. ..++.++|+|
T Consensus 216 VivPTREL~~Q~y~~~qKLl~~~hWIVPg~l-mGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlD 294 (708)
T KOG0348|consen 216 VIVPTRELALQIYETVQKLLKPFHWIVPGVL-MGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLD 294 (708)
T ss_pred EEechHHHHHHHHHHHHHHhcCceEEeecee-ecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEec
Confidence 99999999999999999763 23333 44444332 37789999994 4444 3779999999
Q ss_pred cCcccCCCCCChhHHHHHhccc-------------cccceEeecCCCchHHHHHHHHcC-CeEEEE--------------
Q 010836 165 EIQMLGCKTRGFSFTRALLGIC-------------ANELHLCGDPAAVPLIQQILQVTG-DDVKVQ-------------- 216 (499)
Q Consensus 165 Eah~~~~~~~g~~~~~~ll~l~-------------~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~-------------- 216 (499)
|+|.+.+..++-..+.++-.+- ....+++-+.+..+-+.++....- +...+.
T Consensus 295 EaDrlleLGfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a 374 (708)
T KOG0348|consen 295 EADRLLELGFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKA 374 (708)
T ss_pred chhHHHhccchhhHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhh
Confidence 9999997744434444443331 111222222223344444443221 111111
Q ss_pred --------------eeee---------cCCCCcc----cccc-ccccccCCCCEEEEe-eHHHHHHHHHHHHHc------
Q 010836 217 --------------SYER---------LSPLVPL----NVPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESR------ 261 (499)
Q Consensus 217 --------------~~~~---------~~~~~~~----~~~l-~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~------ 261 (499)
.+.- ..|-... ...+ .........++|||| +.+.++.-+..+.+.
T Consensus 375 ~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e 454 (708)
T KOG0348|consen 375 VQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLE 454 (708)
T ss_pred hhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccc
Confidence 0000 0000000 0000 011112344677888 577777666666542
Q ss_pred ---------------CCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccccccCccc
Q 010836 262 ---------------GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVEL 325 (499)
Q Consensus 262 ---------------~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~ 325 (499)
...++.-+||+|++++|..+++.|.. ....||+|||+++||+|+| |++||.|+.
T Consensus 455 ~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~--~~~~VLLcTDVAaRGLDlP~V~~vVQYd~-------- 524 (708)
T KOG0348|consen 455 GSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSH--SRRAVLLCTDVAARGLDLPHVGLVVQYDP-------- 524 (708)
T ss_pred cccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhcc--ccceEEEehhhhhccCCCCCcCeEEEeCC--------
Confidence 12258889999999999999999999 7788999999999999998 999999999
Q ss_pred cccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCHHHHHhhhCCCCch
Q 010836 326 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPM 373 (499)
Q Consensus 326 ~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 373 (499)
|.+.++|+||+||++|.|.+ |....+.+ +.+.+ +-+++......
T Consensus 525 -P~s~adylHRvGRTARaG~k-G~alLfL~-P~Eae-y~~~l~~~~~~ 568 (708)
T KOG0348|consen 525 -PFSTADYLHRVGRTARAGEK-GEALLFLL-PSEAE-YVNYLKKHHIM 568 (708)
T ss_pred -CCCHHHHHHHhhhhhhccCC-CceEEEec-ccHHH-HHHHHHhhcch
Confidence 78999999999999999987 33333333 33333 44445444433
No 36
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1e-36 Score=325.18 Aligned_cols=294 Identities=21% Similarity=0.211 Sum_probs=216.9
Q ss_pred ccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHH-HHHHcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCC
Q 010836 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL-SRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQ 134 (499)
Q Consensus 57 ~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l-~~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~ 134 (499)
|||..+++.|+ +++.+ ++++++++++|||+|||++|. ..+...+.++|++|+++|+.|+.+.++.+|+.+..+++.
T Consensus 9 fg~~~fr~~Q~~~i~~i--l~g~dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~~gi~~~~~~s~ 86 (591)
T TIGR01389 9 FGYDDFRPGQEEIISHV--LDGRDVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAAGVAAAYLNST 86 (591)
T ss_pred cCCCCCCHHHHHHHHHH--HcCCCEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 69999999999 99998 669999999999999999984 556677889999999999999999999999999888775
Q ss_pred eecc----------cCCCceEEEceeeccc--------cCCccEEEEecCcccCCCCCChhHHHH------Hh-cccccc
Q 010836 135 EREE----------VDGAKHRAVTVEMADV--------VSDYDCAVIDEIQMLGCKTRGFSFTRA------LL-GICANE 189 (499)
Q Consensus 135 ~~~~----------~~~~~~iv~T~e~~~~--------l~~~~~iViDEah~~~~~~~g~~~~~~------ll-~l~~~~ 189 (499)
.... .....++++|||.+.. ..+++++||||||+++ +||+.+... +. .++...
T Consensus 87 ~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~--~~g~~frp~y~~l~~l~~~~~~~~ 164 (591)
T TIGR01389 87 LSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVS--QWGHDFRPEYQRLGSLAERFPQVP 164 (591)
T ss_pred CCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccc--cccCccHHHHHHHHHHHHhCCCCC
Confidence 4321 1246788999987632 2679999999999998 567654322 11 122333
Q ss_pred ceEeecCCCchHHHHHHHHcCC---eEEEEeeeecCC------CCcccccc-ccccccCCCCEEEEe-eHHHHHHHHHHH
Q 010836 190 LHLCGDPAAVPLIQQILQVTGD---DVKVQSYERLSP------LVPLNVPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAI 258 (499)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~------~~~~~~~l-~~l~~~~~~~~iv~~-s~~~~~~l~~~L 258 (499)
+..+.++++......+..+.+. ...+..+.+... .......+ ..+........|||+ |++.++.+++.|
T Consensus 165 vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L 244 (591)
T TIGR01389 165 RIALTATADAETRQDIRELLRLADANEFITSFDRPNLRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERL 244 (591)
T ss_pred EEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCCCcEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHH
Confidence 3334444444455555555432 111222211110 00001111 222223344556666 999999999999
Q ss_pred HHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHhhh
Q 010836 259 ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIA 337 (499)
Q Consensus 259 ~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~ 337 (499)
...+. .+..+||+|+.++|..+++.|.+ |+++|||||+++++|||+| |++||+++. |.+..+|+|++
T Consensus 245 ~~~g~-~~~~~H~~l~~~~R~~i~~~F~~--g~~~vlVaT~a~~~GID~p~v~~VI~~~~---------p~s~~~y~Q~~ 312 (591)
T TIGR01389 245 ESQGI-SALAYHAGLSNKVRAENQEDFLY--DDVKVMVATNAFGMGIDKPNVRFVIHYDM---------PGNLESYYQEA 312 (591)
T ss_pred HhCCC-CEEEEECCCCHHHHHHHHHHHHc--CCCcEEEEechhhccCcCCCCCEEEEcCC---------CCCHHHHhhhh
Confidence 88776 89999999999999999999999 9999999999999999997 999999999 66999999999
Q ss_pred ccCCCCCCCCCcEEEEEEcCC-CHHHHHhhhCC
Q 010836 338 GRAGRYGSKFPVGEVTCLDSE-DLPLLHKSLLE 369 (499)
Q Consensus 338 GRagR~g~~~~~g~~~~~~~~-~~~~~~~~~~~ 369 (499)
|||||.|.. |.|+.+++. +...++.+++.
T Consensus 313 GRaGR~G~~---~~~il~~~~~d~~~~~~~i~~ 342 (591)
T TIGR01389 313 GRAGRDGLP---AEAILLYSPADIALLKRRIEQ 342 (591)
T ss_pred ccccCCCCC---ceEEEecCHHHHHHHHHHHhc
Confidence 999999976 777666554 33455555554
No 37
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1e-37 Score=331.20 Aligned_cols=355 Identities=21% Similarity=0.211 Sum_probs=272.7
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcCC-----CEEEEccHHHHHHHHHHHHHh-cCCceeEeeCC----eecccCCCceE
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLESSS-----SGIYCGPLRLLAWEVAKRLNK-ANVSCDLITGQ----EREEVDGAKHR 145 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~~~-----~~l~l~P~r~La~q~~~~l~~-~g~~~~~~~g~----~~~~~~~~~~i 145 (499)
+++.++|+||||||||++.++.|++.+ .+.+..|+|..|..+++++++ +|.+++-..|. +.....++.+-
T Consensus 64 ~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VGY~iRfe~~~s~~Trik 143 (845)
T COG1643 64 QNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKVSPRTRIK 143 (845)
T ss_pred hCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceeeEEEEeeccCCCCceeE
Confidence 589999999999999999999998764 445669999999999999984 56555544444 44445577888
Q ss_pred EEceeec-------cccCCccEEEEecCcccCCCCCChhHHHHHhccccc-------cceEeecCCCchH--HHHHHH--
Q 010836 146 AVTVEMA-------DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN-------ELHLCGDPAAVPL--IQQILQ-- 207 (499)
Q Consensus 146 v~T~e~~-------~~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~-------~~~~~~~~~~~~~--~~~l~~-- 207 (499)
++|..++ ..++.+++|||||+|+.+-. +++++++... .++++-++++++. +..++.
T Consensus 144 ~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~------tDilLgllk~~~~~rr~DLKiIimSATld~~rfs~~f~~a 217 (845)
T COG1643 144 VMTDGILLREIQNDPLLSGYSVVIIDEAHERSLN------TDILLGLLKDLLARRRDDLKLIIMSATLDAERFSAYFGNA 217 (845)
T ss_pred EeccHHHHHHHhhCcccccCCEEEEcchhhhhHH------HHHHHHHHHHHHhhcCCCceEEEEecccCHHHHHHHcCCC
Confidence 9998555 35799999999999998765 7777776533 4777777777643 333332
Q ss_pred ----HcCCeEEEEeeeecCCC-Cc-ccccc----ccccccCCCCEEEEe-eHHHHHHHHHHHHH--c-CCCeEEEEcCCC
Q 010836 208 ----VTGDDVKVQSYERLSPL-VP-LNVPL----GSFSNIQTGDCIVTF-SRHAIYRLKKAIES--R-GKHLCSIVYGSL 273 (499)
Q Consensus 208 ----~~~~~~~~~~~~~~~~~-~~-~~~~l----~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~--~-~~~~v~~~hg~l 273 (499)
..|..+++..++..... +. ....+ ........|++++|+ ..++++++++.|++ . ....+.++||.|
T Consensus 218 pvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L 297 (845)
T COG1643 218 PVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGAL 297 (845)
T ss_pred CEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccC
Confidence 23445566665533332 11 11111 223344689999999 79999999999987 3 235799999999
Q ss_pred CHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEccccc---ccCc------cccccChhhHHhhhccCCCC
Q 010836 274 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRY 343 (499)
Q Consensus 274 ~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~---~~~~------~~~p~s~~~~~Qr~GRagR~ 343 (499)
+.+++.++++--.. |+++|++||+++++||+|| |++||+.+..| ||+. ...|+|.++..||+|||||.
T Consensus 298 ~~~eQ~rvF~p~~~--~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~ 375 (845)
T COG1643 298 SAEEQVRVFEPAPG--GKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRT 375 (845)
T ss_pred CHHHHHhhcCCCCC--CcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccC
Confidence 99965554443333 6678999999999999996 99999988876 7765 37889999999999999999
Q ss_pred CCCCCcEEEEEEcCCCHHHHHhhhCCCCchhhhcCCCChHHHHHHHHh-----------cCCCccHHHHHHHHHHhcccC
Q 010836 344 GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYSR-----------LHPDSSLYGILEHFLENAKLS 412 (499)
Q Consensus 344 g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~~~-----------~~~~~~l~~~l~~~~~~~~~~ 412 (499)
++ |+||.+++++ .+..+.....|||.+.++....++++.+.. .|+..++..+++.|..+.+++
T Consensus 376 ~p----GicyRLyse~--~~~~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f~fld~P~~~~i~~A~~~L~~LGAld 449 (845)
T COG1643 376 GP----GICYRLYSEE--DFLAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPEAAIQAALTLLQELGALD 449 (845)
T ss_pred CC----ceEEEecCHH--HHHhcccCCChhhhhcchHHHHHHHHhcCCCCCcccCccCCCCChHHHHHHHHHHHHcCCcC
Confidence 98 9999999986 555899999999999999999999998774 256789999999999999998
Q ss_pred CCccccChHHHHHHHHhhccCCCCHHH-HHhhhcCCCCC
Q 010836 413 ENYFFANCEEVLKVATVIDQLPLRLHE-KYLFCISPVDM 450 (499)
Q Consensus 413 ~~~~~~~~~~~~~l~~~l~~~~l~~~~-~~~~~~~p~~~ 450 (499)
.. +.++.+|+.|+.+|+++.. ++++...-..|
T Consensus 450 ~~------g~LT~lG~~ms~lpldprLA~mLl~a~~~g~ 482 (845)
T COG1643 450 DS------GKLTPLGKQMSLLPLDPRLARMLLTAPEGGC 482 (845)
T ss_pred CC------CCCCHHHHHHHhCCCChHHHHHHHhccccCc
Confidence 77 4599999999999997776 33333333333
No 38
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.8e-37 Score=280.01 Aligned_cols=297 Identities=16% Similarity=0.202 Sum_probs=216.3
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHH----HHHHH---cCCCEEEEccHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA----LSRLE---SSSSGIYCGPLR 111 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~----l~~l~---~~~~~l~l~P~r 111 (499)
.+.+++...+... ||..|+.+|+ ++|.+ +++++|+.++..|+|||..+ ++.+. +.-+++++.|||
T Consensus 33 gl~edlLrgiY~y-----GfekPS~IQqrAi~~I--lkGrdViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTR 105 (400)
T KOG0328|consen 33 GLKEDLLRGIYAY-----GFEKPSAIQQRAIPQI--LKGRDVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTR 105 (400)
T ss_pred CchHHHHHHHHHh-----ccCCchHHHhhhhhhh--hcccceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChH
Confidence 4667777777777 9999999999 99999 77999999999999999885 34332 234689999999
Q ss_pred HHHHHHHHHHHhc----CCceeEeeCCee-----cccC-CCceEEEce-eeccc-------cCCccEEEEecCcccCCCC
Q 010836 112 LLAWEVAKRLNKA----NVSCDLITGQER-----EEVD-GAKHRAVTV-EMADV-------VSDYDCAVIDEIQMLGCKT 173 (499)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~g~~~-----~~~~-~~~~iv~T~-e~~~~-------l~~~~~iViDEah~~~~~~ 173 (499)
+||.|+.+.+..+ ++.|..+.|+.. +..+ +..++..|| +.++. .+.++++|+||||++++..
T Consensus 106 ELa~Qi~~vi~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kg 185 (400)
T KOG0328|consen 106 ELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKG 185 (400)
T ss_pred HHHHHHHHHHHHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhh
Confidence 9999999999865 577777776544 2223 445566777 33333 2779999999999999763
Q ss_pred CChhHHHHHhccccccceEeecCCCch--HHHHHHHHcCCeEEEEeeee-------------cCCCCccccccccc-ccc
Q 010836 174 RGFSFTRALLGICANELHLCGDPAAVP--LIQQILQVTGDDVKVQSYER-------------LSPLVPLNVPLGSF-SNI 237 (499)
Q Consensus 174 ~g~~~~~~ll~l~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~-------------~~~~~~~~~~l~~l-~~~ 237 (499)
.+-+..+....+++. .+++.-+++.+ ..+-.-....+.+.+-.-.. ....+++.+.+.++ ..+
T Consensus 186 fk~Qiydiyr~lp~~-~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve~EewKfdtLcdLYd~L 264 (400)
T KOG0328|consen 186 FKEQIYDIYRYLPPG-AQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVEKEEWKFDTLCDLYDTL 264 (400)
T ss_pred HHHHHHHHHHhCCCC-ceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeechhhhhHhHHHHHhhhh
Confidence 333344555555543 33343333332 22222222233222211100 11112223333222 223
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEc
Q 010836 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFS 315 (499)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~ 315 (499)
.-.++++|| |++.+..+.+.+++... .+...||+|++++|.++++.|++ |+.+||++||+.++|+|+| |+.||+|
T Consensus 265 tItQavIFcnTk~kVdwLtekm~~~nf-tVssmHGDm~qkERd~im~dFRs--g~SrvLitTDVwaRGiDv~qVslviNY 341 (400)
T KOG0328|consen 265 TITQAVIFCNTKRKVDWLTEKMREANF-TVSSMHGDMEQKERDKIMNDFRS--GKSRVLITTDVWARGIDVQQVSLVINY 341 (400)
T ss_pred ehheEEEEecccchhhHHHHHHHhhCc-eeeeccCCcchhHHHHHHHHhhc--CCceEEEEechhhccCCcceeEEEEec
Confidence 345667766 89999999999988776 89999999999999999999999 9999999999999999997 9999999
Q ss_pred ccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 316 ~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
|+ |.+.+.|+||+||.||+|.+ |+++.|...+
T Consensus 342 DL---------P~nre~YIHRIGRSGRFGRk---GvainFVk~~ 373 (400)
T KOG0328|consen 342 DL---------PNNRELYIHRIGRSGRFGRK---GVAINFVKSD 373 (400)
T ss_pred CC---------CccHHHHhhhhccccccCCc---ceEEEEecHH
Confidence 99 78999999999999999998 9998886544
No 39
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=1.3e-36 Score=320.50 Aligned_cols=372 Identities=20% Similarity=0.228 Sum_probs=270.6
Q ss_pred ccCCCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----cC--------CC
Q 010836 37 AFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SS--------SS 103 (499)
Q Consensus 37 ~~~~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~----~~--------~~ 103 (499)
.++.+++.++++++.. |.+||++|. ++|.+ .+|++++++||||||||++|+.+++ +. -.
T Consensus 4 ~~~~l~~~v~~~~~~~------~~~~t~~Q~~a~~~i--~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~ 75 (814)
T COG1201 4 IFNILDPRVREWFKRK------FTSLTPPQRYAIPEI--HSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIY 75 (814)
T ss_pred hhhhcCHHHHHHHHHh------cCCCCHHHHHHHHHH--hCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceE
Confidence 4567999999999986 999999999 99999 5799999999999999999865543 22 14
Q ss_pred EEEEccHHHHHHHHHHHHH----hcCCceeEeeCCeecc-----cCCCc-eEEEceeecc----------ccCCccEEEE
Q 010836 104 GIYCGPLRLLAWEVAKRLN----KANVSCDLITGQEREE-----VDGAK-HRAVTVEMAD----------VVSDYDCAVI 163 (499)
Q Consensus 104 ~l~l~P~r~La~q~~~~l~----~~g~~~~~~~g~~~~~-----~~~~~-~iv~T~e~~~----------~l~~~~~iVi 163 (499)
+||+.|.|+|.+++.+++. .+|+++.+.||+.... ..+++ ++++|||.+. .+.++.++||
T Consensus 76 ~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIV 155 (814)
T COG1201 76 ALYISPLKALNNDIRRRLEEPLRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIV 155 (814)
T ss_pred EEEeCcHHHHHHHHHHHHHHHHHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEe
Confidence 6999999999999999987 4699999999986442 33444 5577777764 3589999999
Q ss_pred ecCcccCCCCCChhHHHHHhccc--cccceEeecCCCchHHHHHHHHcCCe---EEEEeeeecCCC--------Cc---c
Q 010836 164 DEIQMLGCKTRGFSFTRALLGIC--ANELHLCGDPAAVPLIQQILQVTGDD---VKVQSYERLSPL--------VP---L 227 (499)
Q Consensus 164 DEah~~~~~~~g~~~~~~ll~l~--~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~--------~~---~ 227 (499)
||+|.+.+..||......+..+. +.+++.+|.++++.....+..+.... +.+....-..+. .. .
T Consensus 156 DEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~ 235 (814)
T COG1201 156 DEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVEDLIYD 235 (814)
T ss_pred ehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCCccccc
Confidence 99999999999999765543332 22788899999988777777766442 344332111111 11 0
Q ss_pred ----ccccc---cccccCCCCEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecch
Q 010836 228 ----NVPLG---SFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 300 (499)
Q Consensus 228 ----~~~l~---~l~~~~~~~~iv~~s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~ 300 (499)
...+. .+.+......||++|+..++.++..|++.+...+..|||+++.+.|..++++|++ |+.+++|||+.
T Consensus 236 ~~~~~~~~~~i~~~v~~~~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~--G~lravV~TSS 313 (814)
T COG1201 236 EELWAALYERIAELVKKHRTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKE--GELKAVVATSS 313 (814)
T ss_pred cchhHHHHHHHHHHHhhcCcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhc--CCceEEEEccc
Confidence 00111 1112223334444599999999999999886689999999999999999999999 99999999999
Q ss_pred hhccccc-cccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCH----HHHHhhhCCCCc--h
Q 010836 301 IGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL----PLLHKSLLEPSP--M 373 (499)
Q Consensus 301 ~~~Gidi-pv~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~----~~~~~~~~~~~~--~ 373 (499)
++-|||+ .|+.||+++. |.+.+.+.||+||+|+.-..-+.|+++....+|. ...+.+.+...+ +
T Consensus 314 LELGIDiG~vdlVIq~~S---------P~sV~r~lQRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~ 384 (814)
T COG1201 314 LELGIDIGDIDLVIQLGS---------PKSVNRFLQRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIK 384 (814)
T ss_pred hhhccccCCceEEEEeCC---------cHHHHHHhHhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCC
Confidence 9999999 5999999988 6699999999999997655457799888875443 223334444443 3
Q ss_pred hhhcCCCChHHHHHHHHhcCCCccHHHHHHHHHHhcccCCCccccChHHHHHHHHhhcc
Q 010836 374 LESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQ 432 (499)
Q Consensus 374 i~~~~l~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 432 (499)
+...++.-...++....... ..+..++.+.+.+. ..|..-..+++..+.++++.
T Consensus 385 i~~~~LDVLaq~ivg~~~~~-~~~~~~~y~~vrra----ypy~~L~~e~f~~v~~~l~~ 438 (814)
T COG1201 385 IPKNPLDVLAQQIVGMALEK-VWEVEEAYRVVRRA----YPYADLSREDFRLVLRYLAG 438 (814)
T ss_pred CCCcchhHHHHHHHHHHhhC-cCCHHHHHHHHHhc----cccccCCHHHHHHHHHHHhh
Confidence 33444555555555544433 44455544444432 24444456777777777776
No 40
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=5.5e-36 Score=328.79 Aligned_cols=365 Identities=16% Similarity=0.134 Sum_probs=257.5
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcCC-----CEEEEccHHHHHHHHHHHHHh-----cCCceeEeeCCeecccCCCceE
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLESSS-----SGIYCGPLRLLAWEVAKRLNK-----ANVSCDLITGQEREEVDGAKHR 145 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~~~-----~~l~l~P~r~La~q~~~~l~~-----~g~~~~~~~g~~~~~~~~~~~i 145 (499)
++++++++|+||||||++.++.+...+ .+++.+|+|..|..+++++++ +|..+++.+..+.....++.++
T Consensus 88 ~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~lG~~VGY~vrf~~~~s~~t~I~ 167 (1294)
T PRK11131 88 DHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETELGGCVGYKVRFNDQVSDNTMVK 167 (1294)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhhcceeceeecCccccCCCCCEE
Confidence 578899999999999999988887643 334458987666666666553 3445555444333344578899
Q ss_pred EEceeec-------cccCCccEEEEecCccc-CCCCCChhHHHHHhcccc--ccceEeecCCCchHHHHHHHHcCC----
Q 010836 146 AVTVEMA-------DVVSDYDCAVIDEIQML-GCKTRGFSFTRALLGICA--NELHLCGDPAAVPLIQQILQVTGD---- 211 (499)
Q Consensus 146 v~T~e~~-------~~l~~~~~iViDEah~~-~~~~~g~~~~~~ll~l~~--~~~~~~~~~~~~~~~~~l~~~~~~---- 211 (499)
++|+.++ ..+++++++||||||++ .+. ++... .+..+.. ...+++..++|.+. +.+....+.
T Consensus 168 v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~--DfLLg-~Lk~lL~~rpdlKvILmSATid~-e~fs~~F~~apvI 243 (1294)
T PRK11131 168 LMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNI--DFILG-YLKELLPRRPDLKVIITSATIDP-ERFSRHFNNAPII 243 (1294)
T ss_pred EEChHHHHHHHhcCCccccCcEEEecCcccccccc--chHHH-HHHHhhhcCCCceEEEeeCCCCH-HHHHHHcCCCCEE
Confidence 9999554 34799999999999974 433 33321 1222221 24566666666653 344444332
Q ss_pred -----eEEEEeeeecCCCCcc---cccc-------ccccccCCCCEEEEe-eHHHHHHHHHHHHHcCC--CeEEEEcCCC
Q 010836 212 -----DVKVQSYERLSPLVPL---NVPL-------GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGK--HLCSIVYGSL 273 (499)
Q Consensus 212 -----~~~~~~~~~~~~~~~~---~~~l-------~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~--~~v~~~hg~l 273 (499)
.+.+..++........ ...+ ..+.....++++||+ ++.+++.+++.|++.+. ..+.++||++
T Consensus 244 ~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~L 323 (1294)
T PRK11131 244 EVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARL 323 (1294)
T ss_pred EEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCC
Confidence 1222222222111000 0111 111223568888888 89999999999988654 2478999999
Q ss_pred CHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEccccc---ccCc------cccccChhhHHhhhccCCCC
Q 010836 274 PPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRY 343 (499)
Q Consensus 274 ~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~---~~~~------~~~p~s~~~~~Qr~GRagR~ 343 (499)
++++|..+++. . |..+||||||++++||||| |++||+++..| ||+. ...|+|.++|.||+|||||.
T Consensus 324 s~~eQ~~Vf~~--~--g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~ 399 (1294)
T PRK11131 324 SNSEQNRVFQS--H--SGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRV 399 (1294)
T ss_pred CHHHHHHHhcc--c--CCeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCC
Confidence 99988887764 3 7789999999999999997 99999998644 6654 24578999999999999999
Q ss_pred CCCCCcEEEEEEcCCCHHHHHhhhCCCCchhhhcCCCChHHHHHHHH----------hcCCCccHHHHHHHHHHhcccCC
Q 010836 344 GSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS----------RLHPDSSLYGILEHFLENAKLSE 413 (499)
Q Consensus 344 g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~~----------~~~~~~~l~~~l~~~~~~~~~~~ 413 (499)
++ |.||.+++++ .+..+.+...|+|.+.++...+++++.+. +.|+...+..+++.+..+.+++.
T Consensus 400 ~~----G~c~rLyte~--d~~~~~~~~~PEIlR~~L~~viL~lk~lgl~di~~F~fldpP~~~~i~~al~~L~~LgAld~ 473 (1294)
T PRK11131 400 SE----GICIRLYSED--DFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITT 473 (1294)
T ss_pred CC----cEEEEeCCHH--HHHhhhcccCCccccCCHHHHHHHHHHcCCCCcceeeCCCCCCHHHHHHHHHHHHHCCCCCc
Confidence 76 9999999875 55677788999999999999999998754 33556789999999999998874
Q ss_pred CccccChHHHHHHHHhhccCCCCHHH-HHhhhcCCCCCCChHH
Q 010836 414 NYFFANCEEVLKVATVIDQLPLRLHE-KYLFCISPVDMNDDIS 455 (499)
Q Consensus 414 ~~~~~~~~~~~~l~~~l~~~~l~~~~-~~~~~~~p~~~~~~~~ 455 (499)
.-. .+...++.+|..|.++|+++.. ++++..+-.+|.++.+
T Consensus 474 ~~~-~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl 515 (1294)
T PRK11131 474 DEQ-ASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVM 515 (1294)
T ss_pred ccc-CCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHH
Confidence 311 1124699999999999998877 7777777777766544
No 41
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=100.00 E-value=4.9e-36 Score=305.46 Aligned_cols=297 Identities=20% Similarity=0.222 Sum_probs=229.9
Q ss_pred ccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHH-HHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCC
Q 010836 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA-LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQ 134 (499)
Q Consensus 57 ~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~-l~~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~ 134 (499)
+|+..+++.|+ .+..+ +.++++++..|||+|||++| +.++...|-+|||+|..+|+.++.+.+...|+.+..+.+.
T Consensus 13 fGy~~FR~gQ~evI~~~--l~g~d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~Gi~A~~lnS~ 90 (590)
T COG0514 13 FGYASFRPGQQEIIDAL--LSGKDTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAAGIRAAYLNST 90 (590)
T ss_pred hCccccCCCHHHHHHHH--HcCCcEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHcCceeehhhcc
Confidence 69999999999 88888 66999999999999999998 7778888999999999999999999999999998887765
Q ss_pred eecc----------cCCCceEEEceeeccc--------cCCccEEEEecCcccCCCCCChhHHHHH-------hcccccc
Q 010836 135 EREE----------VDGAKHRAVTVEMADV--------VSDYDCAVIDEIQMLGCKTRGFSFTRAL-------LGICANE 189 (499)
Q Consensus 135 ~~~~----------~~~~~~iv~T~e~~~~--------l~~~~~iViDEah~~~~~~~g~~~~~~l-------l~l~~~~ 189 (499)
.... ...-.+++.+||.+.. ..++.++||||||+++ +||+.|.... -.++..+
T Consensus 91 l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiS--qWGhdFRP~Y~~lg~l~~~~~~~p 168 (590)
T COG0514 91 LSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCIS--QWGHDFRPDYRRLGRLRAGLPNPP 168 (590)
T ss_pred cCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHh--hcCCccCHhHHHHHHHHhhCCCCC
Confidence 3221 1135889999987742 2679999999999999 8898875332 2233334
Q ss_pred ceEeecCCCchHHHHHHHHcCCe---EEEEeeeecCCCC---cc---cccccccc---ccC-CCCEEEEeeHHHHHHHHH
Q 010836 190 LHLCGDPAAVPLIQQILQVTGDD---VKVQSYERLSPLV---PL---NVPLGSFS---NIQ-TGDCIVTFSRHAIYRLKK 256 (499)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~---~~---~~~l~~l~---~~~-~~~~iv~~s~~~~~~l~~ 256 (499)
+..+.++++.....++.+.++.. ..+..+.|++-.. .. ...+..+. ... ...+|+|.|++.++.+++
T Consensus 169 ~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~ 248 (590)
T COG0514 169 VLALTATATPRVRDDIREQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAE 248 (590)
T ss_pred EEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHH
Confidence 45555666666777777655432 3344444432111 00 01111222 222 334666669999999999
Q ss_pred HHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHh
Q 010836 257 AIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQ 335 (499)
Q Consensus 257 ~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Q 335 (499)
.|.+.+. ++..+||+|+.++|..+.++|.. ++.+|+|||.+++||||.| |++||+++. |.|.++|.|
T Consensus 249 ~L~~~g~-~a~~YHaGl~~~eR~~~q~~f~~--~~~~iiVAT~AFGMGIdKpdVRfViH~~l---------P~s~EsYyQ 316 (590)
T COG0514 249 WLRKNGI-SAGAYHAGLSNEERERVQQAFLN--DEIKVMVATNAFGMGIDKPDVRFVIHYDL---------PGSIESYYQ 316 (590)
T ss_pred HHHHCCC-ceEEecCCCCHHHHHHHHHHHhc--CCCcEEEEeccccCccCCCCceEEEEecC---------CCCHHHHHH
Confidence 9999966 99999999999999999999999 9999999999999999997 999999999 779999999
Q ss_pred hhccCCCCCCCCCcEEEEEEcCC-CHHHHHhhhCCCCc
Q 010836 336 IAGRAGRYGSKFPVGEVTCLDSE-DLPLLHKSLLEPSP 372 (499)
Q Consensus 336 r~GRagR~g~~~~~g~~~~~~~~-~~~~~~~~~~~~~~ 372 (499)
.+|||||.|.. ..|+.+++. |....+.+++...+
T Consensus 317 E~GRAGRDG~~---a~aill~~~~D~~~~~~~i~~~~~ 351 (590)
T COG0514 317 ETGRAGRDGLP---AEAILLYSPEDIRWQRYLIEQSKP 351 (590)
T ss_pred HHhhccCCCCc---ceEEEeeccccHHHHHHHHHhhcc
Confidence 99999999988 888888774 44555566655443
No 42
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.7e-36 Score=296.81 Aligned_cols=299 Identities=18% Similarity=0.182 Sum_probs=222.1
Q ss_pred CCCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-----------------
Q 010836 39 ASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES----------------- 100 (499)
Q Consensus 39 ~~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~----------------- 100 (499)
..+.+.+..-++.. +++.+|++|+ ++|.+ ..+++++.+|+||||||.+++.++..
T Consensus 79 ~~l~~~l~~ni~~~-----~~~~ptpvQk~sip~i--~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~ 151 (482)
T KOG0335|consen 79 AILGEALAGNIKRS-----GYTKPTPVQKYSIPII--SGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGV 151 (482)
T ss_pred cchhHHHhhccccc-----cccCCCcceeecccee--ecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCC
Confidence 45666677777776 9999999999 99999 66999999999999999998765531
Q ss_pred CCCEEEEccHHHHHHHHHHHHHhc----CCceeEeeCCeec------ccCCCceEEEceeecc-c-------cCCccEEE
Q 010836 101 SSSGIYCGPLRLLAWEVAKRLNKA----NVSCDLITGQERE------EVDGAKHRAVTVEMAD-V-------VSDYDCAV 162 (499)
Q Consensus 101 ~~~~l~l~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~------~~~~~~~iv~T~e~~~-~-------l~~~~~iV 162 (499)
.+++++++|||+||.|++++.+++ ++.+...+|+... ...+.+++++|+..+. + +.+++++|
T Consensus 152 ~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~v 231 (482)
T KOG0335|consen 152 YPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLV 231 (482)
T ss_pred CCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEE
Confidence 146799999999999999999875 5666667776322 2347889999996553 2 47889999
Q ss_pred EecCcccCC-CCCChhHHHHHhcccc----ccceEeecCCCchHHHHHHHHcC-CeEEEEeeeec--------------C
Q 010836 163 IDEIQMLGC-KTRGFSFTRALLGICA----NELHLCGDPAAVPLIQQILQVTG-DDVKVQSYERL--------------S 222 (499)
Q Consensus 163 iDEah~~~~-~~~g~~~~~~ll~l~~----~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~--------------~ 222 (499)
+||||.|.| ..++.....++..... ....++.+++....+..+....- +.+......+. .
T Consensus 232 LDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V~ 311 (482)
T KOG0335|consen 232 LDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFVN 311 (482)
T ss_pred ecchHHhhhhccccccHHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeeec
Confidence 999999998 7777777666655432 22333444444444444443222 21222111111 1
Q ss_pred CCCcccccccccccc----CCC-----CEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCc
Q 010836 223 PLVPLNVPLGSFSNI----QTG-----DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEF 292 (499)
Q Consensus 223 ~~~~~~~~l~~l~~~----~~~-----~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~ 292 (499)
........+..+... ..+ ..++|+ +++.+..++..|...+. .+..+||..++.+|.+.++.|++ |..
T Consensus 312 ~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~-~~~sIhg~~tq~er~~al~~Fr~--g~~ 388 (482)
T KOG0335|consen 312 EMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGY-PAKSIHGDRTQIEREQALNDFRN--GKA 388 (482)
T ss_pred chhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCC-CceeecchhhhhHHHHHHHHhhc--CCc
Confidence 111111111222111 122 466666 99999999999998887 99999999999999999999999 999
Q ss_pred cEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 293 DVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 293 ~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
.+||||+++++|+||| |++||+||+ |-+..+|+||+||+||.|.. |.++.|.++.
T Consensus 389 pvlVaT~VaaRGlDi~~V~hVInyDm---------P~d~d~YvHRIGRTGR~Gn~---G~atsf~n~~ 444 (482)
T KOG0335|consen 389 PVLVATNVAARGLDIPNVKHVINYDM---------PADIDDYVHRIGRTGRVGNG---GRATSFFNEK 444 (482)
T ss_pred ceEEEehhhhcCCCCCCCceeEEeec---------CcchhhHHHhccccccCCCC---ceeEEEeccc
Confidence 9999999999999997 999999999 66899999999999999998 9988887754
No 43
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=4.6e-36 Score=330.63 Aligned_cols=363 Identities=16% Similarity=0.136 Sum_probs=260.6
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcCC-----CEEEEccHHHHHHHHHHHHHh-cCCceeEeeCCee----cccCCCceE
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLESSS-----SGIYCGPLRLLAWEVAKRLNK-ANVSCDLITGQER----EEVDGAKHR 145 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~~~-----~~l~l~P~r~La~q~~~~l~~-~g~~~~~~~g~~~----~~~~~~~~i 145 (499)
+++.++++|+||||||++.++.+++.+ ++++..|+|..|..+++++.+ +|.+++...|... ....++.++
T Consensus 81 ~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VGY~vR~~~~~s~~T~I~ 160 (1283)
T TIGR01967 81 ENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFHDQVSSNTLVK 160 (1283)
T ss_pred hCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEeeEEcCCcccCCCceee
Confidence 578999999999999999998887643 344569999999999999874 5777666666433 234467788
Q ss_pred EEceeec-------cccCCccEEEEecCccc-CCCCCChhHHHHHhccccccceEeecCCCchHHHHHHHHcCC------
Q 010836 146 AVTVEMA-------DVVSDYDCAVIDEIQML-GCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGD------ 211 (499)
Q Consensus 146 v~T~e~~-------~~l~~~~~iViDEah~~-~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~------ 211 (499)
++|+.++ ..+.++++|||||||+. .+.+....+...++... ...+++.++++.+. ..+....+.
T Consensus 161 ~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~r-pdLKlIlmSATld~-~~fa~~F~~apvI~V 238 (1283)
T TIGR01967 161 LMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRR-PDLKIIITSATIDP-ERFSRHFNNAPIIEV 238 (1283)
T ss_pred eccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhC-CCCeEEEEeCCcCH-HHHHHHhcCCCEEEE
Confidence 9999654 35789999999999974 33211111122222222 34566666777653 344444432
Q ss_pred ---eEEEEeeeecCCCCcc---cc-------ccccccccCCCCEEEEe-eHHHHHHHHHHHHHcCC--CeEEEEcCCCCH
Q 010836 212 ---DVKVQSYERLSPLVPL---NV-------PLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGK--HLCSIVYGSLPP 275 (499)
Q Consensus 212 ---~~~~~~~~~~~~~~~~---~~-------~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~--~~v~~~hg~l~~ 275 (499)
.+++..++........ .. .+..+.....|+++||+ ++.+++.+++.|++.+. ..+.++||+|++
T Consensus 239 ~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~ 318 (1283)
T TIGR01967 239 SGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSN 318 (1283)
T ss_pred CCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCH
Confidence 2222222221111000 00 11112223568899998 89999999999987642 368999999999
Q ss_pred HHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEccccc---ccCc------cccccChhhHHhhhccCCCCCC
Q 010836 276 ETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRYGS 345 (499)
Q Consensus 276 ~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~---~~~~------~~~p~s~~~~~Qr~GRagR~g~ 345 (499)
++|.++++.+ +..+||||||++++||||| |++||+++..+ ||+. ...|+|.++|.||+|||||.++
T Consensus 319 ~eQ~~vf~~~----~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~ 394 (1283)
T TIGR01967 319 KEQQRVFQPH----SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAP 394 (1283)
T ss_pred HHHHHHhCCC----CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCC
Confidence 9888774432 3479999999999999997 99999999765 6654 3467899999999999999996
Q ss_pred CCCcEEEEEEcCCCHHHHHhhhCCCCchhhhcCCCChHHHHHHHH----------hcCCCccHHHHHHHHHHhcccCCCc
Q 010836 346 KFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS----------RLHPDSSLYGILEHFLENAKLSENY 415 (499)
Q Consensus 346 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~~----------~~~~~~~l~~~l~~~~~~~~~~~~~ 415 (499)
|.||.+++++ .+..+.....|+|.+.++...+++++.+. +.|+...+..+++.+..+..++...
T Consensus 395 ----G~cyRLyte~--~~~~~~~~~~PEIlR~~L~~viL~l~~lg~~di~~f~fldpP~~~~i~~A~~~L~~LGAld~~~ 468 (1283)
T TIGR01967 395 ----GICIRLYSEE--DFNSRPEFTDPEILRTNLASVILQMLALRLGDIAAFPFIEAPDPRAIRDGFRLLEELGALDDDE 468 (1283)
T ss_pred ----ceEEEecCHH--HHHhhhhccCcccccccHHHHHHHHHhcCCCCcccccCCCCCCHHHHHHHHHHHHHCCCCCCCC
Confidence 9999999876 55667788899999999999999998654 3355678999999999999887652
Q ss_pred cccChHHHHHHHHhhccCCCCHHH-HHhhhcCCCCCCCh
Q 010836 416 FFANCEEVLKVATVIDQLPLRLHE-KYLFCISPVDMNDD 453 (499)
Q Consensus 416 ~~~~~~~~~~l~~~l~~~~l~~~~-~~~~~~~p~~~~~~ 453 (499)
.. ..+|.+|..|..+|+++.. ++++..+..+|.++
T Consensus 469 ~~---~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e 504 (1283)
T TIGR01967 469 AE---PQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQE 504 (1283)
T ss_pred CC---ccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHH
Confidence 10 2599999999999998877 66666666665544
No 44
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9.8e-36 Score=281.11 Aligned_cols=294 Identities=16% Similarity=0.150 Sum_probs=222.8
Q ss_pred CcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-------------cCCCEEE
Q 010836 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-------------SSSSGIY 106 (499)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~-------------~~~~~l~ 106 (499)
-.+++.+.+++. ||..||++|+ ++|.+ ++++|++.+|.||+|||+++|.+-. .+..+|+
T Consensus 227 ~~pevmenIkK~-----GFqKPtPIqSQaWPI~--LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lv 299 (629)
T KOG0336|consen 227 CYPEVMENIKKT-----GFQKPTPIQSQAWPIL--LQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLV 299 (629)
T ss_pred hhHHHHHHHHhc-----cCCCCCcchhccccee--ecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEE
Confidence 346677778877 9999999999 99998 8899999999999999999853221 1246799
Q ss_pred EccHHHHHHHHHHHHHhc---CCceeEeeCCeecc------cCCCceEEEceeeccc--------cCCccEEEEecCccc
Q 010836 107 CGPLRLLAWEVAKRLNKA---NVSCDLITGQEREE------VDGAKHRAVTVEMADV--------VSDYDCAVIDEIQML 169 (499)
Q Consensus 107 l~P~r~La~q~~~~l~~~---g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~~--------l~~~~~iViDEah~~ 169 (499)
+.|||+||.|+.-...++ |.+...++|+-.+. ..+..++++||..+.- +..+.++|+||||.|
T Consensus 300 l~ptreLalqie~e~~kysyng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrM 379 (629)
T KOG0336|consen 300 LTPTRELALQIEGEVKKYSYNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRM 379 (629)
T ss_pred EeccHHHHHHHHhHHhHhhhcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhh
Confidence 999999999998877754 66666666654332 2367899999976642 478999999999999
Q ss_pred CCCCCChhHHHHHhccccccceEeecCCCchHHHHHHHHc-CCeEEEEe-------eee-----cCCCCc-ccccccc-c
Q 010836 170 GCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVT-GDDVKVQS-------YER-----LSPLVP-LNVPLGS-F 234 (499)
Q Consensus 170 ~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~-------~~~-----~~~~~~-~~~~l~~-l 234 (499)
+|..+..+..++++.+.+....++.+.+-.+-++++.... .+...+.. ... ..+-+. ....+.. +
T Consensus 380 LDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~ 459 (629)
T KOG0336|consen 380 LDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFV 459 (629)
T ss_pred hcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHH
Confidence 9997777888999999998888888777777777776543 22221110 000 000000 0111111 1
Q ss_pred cccCC-CCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccE
Q 010836 235 SNIQT-GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISR 311 (499)
Q Consensus 235 ~~~~~-~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~ 311 (499)
..... .++|+|+ .+..++.|...|.-.+. ..-.+||+-.+.+|...++.|++ |+++||||||++++|+|+| |.+
T Consensus 460 ~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi-~~q~lHG~r~Q~DrE~al~~~ks--G~vrILvaTDlaSRGlDv~DiTH 536 (629)
T KOG0336|consen 460 ANMSSNDKVIIFVSRKVMADHLSSDFCLKGI-SSQSLHGNREQSDREMALEDFKS--GEVRILVATDLASRGLDVPDITH 536 (629)
T ss_pred HhcCCCceEEEEEechhhhhhccchhhhccc-chhhccCChhhhhHHHHHHhhhc--CceEEEEEechhhcCCCchhcce
Confidence 22333 4456666 46667778777766665 88999999999999999999999 9999999999999999996 999
Q ss_pred EEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEc
Q 010836 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 356 (499)
Q Consensus 312 VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~ 356 (499)
|++||+ |.++++|+||+||+||.|.. |..+.+.
T Consensus 537 V~NyDF---------P~nIeeYVHRvGrtGRaGr~---G~sis~l 569 (629)
T KOG0336|consen 537 VYNYDF---------PRNIEEYVHRVGRTGRAGRT---GTSISFL 569 (629)
T ss_pred eeccCC---------CccHHHHHHHhcccccCCCC---cceEEEE
Confidence 999999 77999999999999999998 7654443
No 45
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.3e-37 Score=294.12 Aligned_cols=400 Identities=19% Similarity=0.218 Sum_probs=280.8
Q ss_pred CcHHHHhhhccCCCccccCCCCCchhc--cchHHHhcCCceEEEEccCCccHHHHHHHHHHc----CCCE-EEEccHHHH
Q 010836 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT--WYPLARKKVRKVILHVGPTNSGKTHQALSRLES----SSSG-IYCGPLRLL 113 (499)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~l~~~q~--~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~----~~~~-l~l~P~r~L 113 (499)
.++...+.++++ .++.-.++ .+-... .+++.++++|.||||||+++++++.. ..++ ...+|+|..
T Consensus 32 ~s~rY~~ilk~R-------~~LPvw~~k~~F~~~l-~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrva 103 (699)
T KOG0925|consen 32 YSQRYYDILKKR-------RELPVWEQKEEFLKLL-LNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVA 103 (699)
T ss_pred CcHHHHHHHHHH-------hcCchHHhHHHHHHHH-hcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHH
Confidence 556667777765 33333322 333322 56899999999999999999887753 2344 445999999
Q ss_pred HHHHHHHHHh-cCCceeEeeCCeecccC----CCceEEEceeec-------cccCCccEEEEecCcccCCCCCChhHHHH
Q 010836 114 AWEVAKRLNK-ANVSCDLITGQEREEVD----GAKHRAVTVEMA-------DVVSDYDCAVIDEIQMLGCKTRGFSFTRA 181 (499)
Q Consensus 114 a~q~~~~l~~-~g~~~~~~~g~~~~~~~----~~~~iv~T~e~~-------~~l~~~~~iViDEah~~~~~~~g~~~~~~ 181 (499)
|.+++.++++ +++..+--.|......+ ++-.-+||-+|+ .++.+++++|+||||+.+-. ++.
T Consensus 104 amsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlA------TDi 177 (699)
T KOG0925|consen 104 AMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLA------TDI 177 (699)
T ss_pred HHHHHHHHHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHH------HHH
Confidence 9999999984 44444444444443332 222336676555 35799999999999998755 888
Q ss_pred Hhccccc------cceEeecCCCc--hHHHHHHH------HcCCeEEEEeeeecCC-CCccccccccc----cccCCCCE
Q 010836 182 LLGICAN------ELHLCGDPAAV--PLIQQILQ------VTGDDVKVQSYERLSP-LVPLNVPLGSF----SNIQTGDC 242 (499)
Q Consensus 182 ll~l~~~------~~~~~~~~~~~--~~~~~l~~------~~~~~~~~~~~~~~~~-~~~~~~~l~~l----~~~~~~~~ 242 (499)
|+|+.+. .+.++-++++. +..+.+.. ..| ..++..++...+ -+..+..+..+ ....+|++
T Consensus 178 LmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDi 256 (699)
T KOG0925|consen 178 LMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDI 256 (699)
T ss_pred HHHHHHHHHhhCCCceEEEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCE
Confidence 8887642 44555555443 33333332 222 333444433332 22223333222 22358999
Q ss_pred EEEe-eHHHHHHHHHHHHHc--------CCCeEEEEcCCCCHHHHHHHHHHhcC---CCCCccEEEecchhhcccccc-c
Q 010836 243 IVTF-SRHAIYRLKKAIESR--------GKHLCSIVYGSLPPETRTRQATRFND---ASSEFDVLVASDAIGMGLNLN-I 309 (499)
Q Consensus 243 iv~~-s~~~~~~l~~~L~~~--------~~~~v~~~hg~l~~~~R~~~~~~f~~---~~g~~~iLvaT~~~~~Gidip-v 309 (499)
++|. +.+++++.++.+... +..+|.++| |.++..+++.-.. +...++|+|+|++++.++.++ |
T Consensus 257 lvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgi 332 (699)
T KOG0925|consen 257 LVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGI 332 (699)
T ss_pred EEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccE
Confidence 9999 788999888888643 456799999 3333333222111 234579999999999999996 9
Q ss_pred cEEEEccccc---ccCc------cccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCHHHHH-hhhCCCCchhhhcCC
Q 010836 310 SRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLH-KSLLEPSPMLESAGL 379 (499)
Q Consensus 310 ~~VI~~~~~~---~~~~------~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~i~~~~l 379 (499)
.+||+-++.+ |||. -.+|+|.++..||+|||||..+ |.|++++.++ .++ ++...+.|++.+.++
T Consensus 333 v~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~p----GkcfrLYte~--~~~~em~~~typeilrsNL 406 (699)
T KOG0925|consen 333 VFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP----GKCFRLYTEE--AFEKEMQPQTYPEILRSNL 406 (699)
T ss_pred EEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCC----CceEEeecHH--hhhhcCCCCCcHHHHHHhh
Confidence 9999988876 8886 3789999999999999999998 8999999976 444 588899999999999
Q ss_pred CChHHHHHH----------HHhcCCCccHHHHHHHHHHhcccCCCccccChHHHHHHHHhhccCCCCHHH-HHhhhcCCC
Q 010836 380 FPNFDLIYM----------YSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHE-KYLFCISPV 448 (499)
Q Consensus 380 ~~~~~~l~~----------~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~-~~~~~~~p~ 448 (499)
....++|+. |.+.+.+++++.+++.+..+++++++ ++++++|.+++++||++.. ++++.++.+
T Consensus 407 ~s~VL~LKklgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdDd------GnLT~lG~imSEFPLdPqLAkmLi~S~ef 480 (699)
T KOG0925|consen 407 SSTVLQLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDD------GNLTSLGEIMSEFPLDPQLAKMLIGSCEF 480 (699)
T ss_pred HHHHHHHHhcCcccccCCcCCCCCChHHHHHHHHHhhhhhhhCCC------cccchhhhhhhcCCCChHHHHHHhhcCCC
Confidence 999999996 44567789999999999999999988 6799999999999996654 555566666
Q ss_pred CCCChHHHHHHHHHHHHHhhCCccccccccccCCCCcccc
Q 010836 449 DMNDDISSQGLTQFATNYSKKGIVQLREIFTPGLGSLRVA 488 (499)
Q Consensus 449 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (499)
||.++ .+++.+|++.++.+.|||
T Consensus 481 nCsnE-----------------iLsisAMLsvPncFvRp~ 503 (699)
T KOG0925|consen 481 NCSNE-----------------ILSISAMLSVPNCFVRPT 503 (699)
T ss_pred CchHH-----------------HHHHHhcccCCccccCCC
Confidence 65554 455566666666666666
No 46
>PHA02653 RNA helicase NPH-II; Provisional
Probab=100.00 E-value=2.7e-35 Score=310.57 Aligned_cols=331 Identities=16% Similarity=0.057 Sum_probs=218.0
Q ss_pred chhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------------------CCCEEEEccHHHHHHHHHHHHHh
Q 010836 64 RPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------------------SSSGIYCGPLRLLAWEVAKRLNK 123 (499)
Q Consensus 64 ~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~-------------------~~~~l~l~P~r~La~q~~~~l~~ 123 (499)
.+|+ .++.+ .++++++++|+||||||++.++++.. .+++++++|||+||.|+..++.+
T Consensus 167 ~iQ~qil~~i--~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 167 DVQLKIFEAW--ISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHH--HhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 3555 77877 56999999999999999996655421 23688999999999999999874
Q ss_pred c-------CCceeEeeCCeecc-----cCCCceEEEceeec-cccCCccEEEEecCcccCCCCCChhHHHHHhccccccc
Q 010836 124 A-------NVSCDLITGQEREE-----VDGAKHRAVTVEMA-DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANEL 190 (499)
Q Consensus 124 ~-------g~~~~~~~g~~~~~-----~~~~~~iv~T~e~~-~~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~ 190 (499)
. |.++.+.+|+.... .....++++|+.+. ..+.+++++||||||++... +......+..+..+.-
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l~~L~~v~~VVIDEaHEr~~~--~DllL~llk~~~~~~r 322 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTLNKLFDYGTVIIDEVHEHDQI--GDIIIAVARKHIDKIR 322 (675)
T ss_pred HhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccccccccCCEEEccccccCccc--hhHHHHHHHHhhhhcC
Confidence 2 45567777765421 12346778887653 36799999999999999865 3222112212222222
Q ss_pred eEeecCCCch-HHHHHHHHcCCeEEE----------EeeeecCCCC---------c-cccccccccc---cCCCCEEEEe
Q 010836 191 HLCGDPAAVP-LIQQILQVTGDDVKV----------QSYERLSPLV---------P-LNVPLGSFSN---IQTGDCIVTF 246 (499)
Q Consensus 191 ~~~~~~~~~~-~~~~l~~~~~~~~~~----------~~~~~~~~~~---------~-~~~~l~~l~~---~~~~~~iv~~ 246 (499)
+++..++|.+ .++.+....+....+ ..++...... . ....+..+.. ...++++||+
T Consensus 323 q~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFl 402 (675)
T PHA02653 323 SLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFV 402 (675)
T ss_pred EEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEE
Confidence 4555556653 334444444332212 1111110000 0 0001112221 1346788888
Q ss_pred -eHHHHHHHHHHHHHcC-CCeEEEEcCCCCHHHHHHHHHHh-cCCCCCccEEEecchhhcccccc-ccEEEEcccccc--
Q 010836 247 -SRHAIYRLKKAIESRG-KHLCSIVYGSLPPETRTRQATRF-NDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKF-- 320 (499)
Q Consensus 247 -s~~~~~~l~~~L~~~~-~~~v~~~hg~l~~~~R~~~~~~f-~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~-- 320 (499)
++.+++.+++.|++.. ...+.++||++++. .++++.| ++ |+++||||||++++||||| |++||++|..+.
T Consensus 403 pg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~--gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~ 478 (675)
T PHA02653 403 ASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSS--KNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE 478 (675)
T ss_pred CcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhcc--CceeEEeccChhhccccccCeeEEEECCCccCCC
Confidence 8999999999998763 45899999999985 4566776 67 8999999999999999997 999999984331
Q ss_pred -cCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCHHHHHhhhCCCCchhhhcCCCChHHHHHHHH---------
Q 010836 321 -DGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLIYMYS--------- 390 (499)
Q Consensus 321 -~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l~~~~--------- 390 (499)
......|+|.++|.||+|||||.++ |.|+.+++++. .. +...+....+.+.++.++.|.
T Consensus 479 ~~~g~~~~iSkasa~QRaGRAGR~~~----G~c~rLyt~~~--~~-----pI~ri~~~~L~~~vL~lk~~g~~~~~~~~l 547 (675)
T PHA02653 479 PFGGKEMFISKSMRTQRKGRVGRVSP----GTYVYFYDLDL--LK-----PIKRIDSEFLHNYILYAKYFNLTLPEDLFV 547 (675)
T ss_pred cccCcccccCHHHHHHhccCcCCCCC----CeEEEEECHHH--hH-----HHHHHhHHHHHHHHHHHHHcCCCCcccccC
Confidence 1122457799999999999999955 99999988763 11 111122122445555555544
Q ss_pred hcCCCccHHHHHHHHHHhcccCC
Q 010836 391 RLHPDSSLYGILEHFLENAKLSE 413 (499)
Q Consensus 391 ~~~~~~~l~~~l~~~~~~~~~~~ 413 (499)
+.|+...+..+++.+..+...++
T Consensus 548 dpP~~~~l~~A~~~L~~lga~~~ 570 (675)
T PHA02653 548 IPSNLDRLRKTEEYIDSFNISIE 570 (675)
T ss_pred CCCCHHHHHHHHHHHHHcCCCch
Confidence 34556789999999998886553
No 47
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=100.00 E-value=4.4e-36 Score=294.45 Aligned_cols=305 Identities=23% Similarity=0.238 Sum_probs=246.9
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHH----HHHHHc-CCCEEEEccHHHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA----LSRLES-SSSGIYCGPLRLL 113 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~----l~~l~~-~~~~l~l~P~r~L 113 (499)
.+++.+++.++.. |++.+.++|. ++..= .+.+.|.+++++|+||||+++ ++.++. +++.+|++|..+|
T Consensus 200 dipe~fk~~lk~~-----G~~eLlPVQ~laVe~G-LLeG~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVAL 273 (830)
T COG1202 200 DIPEKFKRMLKRE-----GIEELLPVQVLAVEAG-LLEGENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVAL 273 (830)
T ss_pred CCcHHHHHHHHhc-----Ccceecchhhhhhhhc-cccCCceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHh
Confidence 5889999999998 9999999999 66653 378999999999999999995 455555 7889999999999
Q ss_pred HHHHHHHHHh----cCCceeEeeCCeec----------ccCCCceEEEceeeccc-------cCCccEEEEecCcccCCC
Q 010836 114 AWEVAKRLNK----ANVSCDLITGQERE----------EVDGAKHRAVTVEMADV-------VSDYDCAVIDEIQMLGCK 172 (499)
Q Consensus 114 a~q~~~~l~~----~g~~~~~~~g~~~~----------~~~~~~~iv~T~e~~~~-------l~~~~~iViDEah~~~~~ 172 (499)
|+|-++.|++ +|+.+.+-.|..+. ...++++||.|+|-+|. +.+++.+||||+|.+.+.
T Consensus 274 ANQKy~dF~~rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~de 353 (830)
T COG1202 274 ANQKYEDFKERYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDE 353 (830)
T ss_pred hcchHHHHHHHhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccch
Confidence 9999999874 58888777774322 23378999999987764 588999999999999999
Q ss_pred CCChhHHHHHhcc--ccccceEeecCCCchHHHHHHHHcCCeEEEEeeeecCCCCcc----------ccccccc------
Q 010836 173 TRGFSFTRALLGI--CANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVPL----------NVPLGSF------ 234 (499)
Q Consensus 173 ~~g~~~~~~ll~l--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----------~~~l~~l------ 234 (499)
+||+.+.-.+-.+ ....-++++.++++.+...++...+..+... ..|+.|++.. ...+..+
T Consensus 354 ERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l~a~lV~y-~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~ 432 (830)
T COG1202 354 ERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKLGAKLVLY-DERPVPLERHLVFARNESEKWDIIARLVKREFS 432 (830)
T ss_pred hcccchhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHhCCeeEee-cCCCCChhHeeeeecCchHHHHHHHHHHHHHHh
Confidence 9999875544332 2335678899999999999999988765443 3456665432 1111111
Q ss_pred ---cccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccccc
Q 010836 235 ---SNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS 310 (499)
Q Consensus 235 ---~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidipv~ 310 (499)
..-..|+.|||. |++.|++++..|...|. ++.++|++|+..+|+.++..|.+ +++.++|+|.+++.|+|+|.+
T Consensus 433 ~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~-~a~pYHaGL~y~eRk~vE~~F~~--q~l~~VVTTAAL~AGVDFPAS 509 (830)
T COG1202 433 TESSKGYRGQTIVFTYSRRRCHELADALTGKGL-KAAPYHAGLPYKERKSVERAFAA--QELAAVVTTAALAAGVDFPAS 509 (830)
T ss_pred hhhccCcCCceEEEecchhhHHHHHHHhhcCCc-ccccccCCCcHHHHHHHHHHHhc--CCcceEeehhhhhcCCCCchH
Confidence 111367777777 99999999999998876 99999999999999999999999 999999999999999999999
Q ss_pred EEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 311 ~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
.||+..+. .+..|+|+.+|.|+.|||||.+.. ..|.||.+....
T Consensus 510 QVIFEsLa----MG~~WLs~~EF~QM~GRAGRp~yH-drGkVyllvepg 553 (830)
T COG1202 510 QVIFESLA----MGIEWLSVREFQQMLGRAGRPDYH-DRGKVYLLVEPG 553 (830)
T ss_pred HHHHHHHH----cccccCCHHHHHHHhcccCCCCcc-cCceEEEEecCC
Confidence 99977663 245699999999999999999874 779999887654
No 48
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.3e-35 Score=275.96 Aligned_cols=318 Identities=17% Similarity=0.188 Sum_probs=227.3
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEEEEccHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLR 111 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~-------~~~~l~l~P~r 111 (499)
.|.|++.+.+..+ +|..|+.+|+ ++|.+.....++.|.++..|+|||.++...++. .+.++.++|+|
T Consensus 96 ~LkPellkgly~M-----~F~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtr 170 (477)
T KOG0332|consen 96 RLKPELLKGLYAM-----KFQKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTR 170 (477)
T ss_pred CCCHHHHhHHHHh-----ccCCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchH
Confidence 4677788777778 9999999999 999998888999999999999999998655543 35779999999
Q ss_pred HHHHHHHHHHHhcCCce----eEeeCCe---ecccCCCceEEEceeec-cc--------cCCccEEEEecCcccCCCCCC
Q 010836 112 LLAWEVAKRLNKANVSC----DLITGQE---REEVDGAKHRAVTVEMA-DV--------VSDYDCAVIDEIQMLGCKTRG 175 (499)
Q Consensus 112 ~La~q~~~~l~~~g~~~----~~~~g~~---~~~~~~~~~iv~T~e~~-~~--------l~~~~~iViDEah~~~~~~~g 175 (499)
+||.|+.+.+.+.|... .+...+. +...-...+++.||..+ ++ +..+.++|+|||+.+.+ ++|
T Consensus 171 ELA~Q~~eVv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~-tqG 249 (477)
T KOG0332|consen 171 ELAPQTGEVVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMID-TQG 249 (477)
T ss_pred HHHHHHHHHHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhh-ccc
Confidence 99999999999887554 3322222 11112457888898543 33 37899999999999987 566
Q ss_pred hhH--HHHHhccccccceEeecCCCchHHHHHHHHcCCeEEE-------------EeeeecCCCCc-cccccccc-cccC
Q 010836 176 FSF--TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKV-------------QSYERLSPLVP-LNVPLGSF-SNIQ 238 (499)
Q Consensus 176 ~~~--~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------------~~~~~~~~~~~-~~~~l~~l-~~~~ 238 (499)
+.- .++...++.+...++.+.+..+-+..++...-.+-.+ ..++-..+... +...+..+ .-..
T Consensus 250 ~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~~~K~~~l~~lyg~~t 329 (477)
T KOG0332|consen 250 FQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACRDDKYQALVNLYGLLT 329 (477)
T ss_pred ccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccchhhHHHHHHHHHhhhh
Confidence 652 2333333433333444444455555665433221111 11111111100 11111111 1123
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcc
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 316 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~ 316 (499)
-|+.|||+ |++.+..++..+.+.|. .|..+||.|.-++|..+++.|++ |..+|||+|++++||||++ |+.||+||
T Consensus 330 igqsiIFc~tk~ta~~l~~~m~~~Gh-~V~~l~G~l~~~~R~~ii~~Fr~--g~~kVLitTnV~ARGiDv~qVs~VvNyd 406 (477)
T KOG0332|consen 330 IGQSIIFCHTKATAMWLYEEMRAEGH-QVSLLHGDLTVEQRAAIIDRFRE--GKEKVLITTNVCARGIDVAQVSVVVNYD 406 (477)
T ss_pred hhheEEEEeehhhHHHHHHHHHhcCc-eeEEeeccchhHHHHHHHHHHhc--CcceEEEEechhhcccccceEEEEEecC
Confidence 45667777 99999999999999988 99999999999999999999999 9999999999999999996 99999999
Q ss_pred ccc-ccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCH-----HHHHhhhCCCCch
Q 010836 317 MKK-FDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL-----PLLHKSLLEPSPM 373 (499)
Q Consensus 317 ~~~-~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~ 373 (499)
++. |++ ..+.+.|+||+||+||+|+. |.++.+.+++. ..++++++.....
T Consensus 407 lP~~~~~----~pD~etYlHRiGRtGRFGkk---G~a~n~v~~~~s~~~mn~iq~~F~~~i~~ 462 (477)
T KOG0332|consen 407 LPVKYTG----EPDYETYLHRIGRTGRFGKK---GLAINLVDDKDSMNIMNKIQKHFNMKIKR 462 (477)
T ss_pred CccccCC----CCCHHHHHHHhccccccccc---ceEEEeecccCcHHHHHHHHHHHhhccee
Confidence 973 544 25889999999999999998 99988765542 3445555554443
No 49
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.2e-34 Score=301.57 Aligned_cols=311 Identities=23% Similarity=0.324 Sum_probs=242.7
Q ss_pred ccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc--------------CCCEEEEccHHHHHHHHHHHH
Q 010836 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES--------------SSSGIYCGPLRLLAWEVAKRL 121 (499)
Q Consensus 57 ~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~--------------~~~~l~l~P~r~La~q~~~~l 121 (499)
|+|..++.+|+ +||.++ ..+.+.+|+||||||||.+|+..+++ +-+++|++|+++||.++++.+
T Consensus 106 f~f~~fN~iQS~vFp~aY-~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~ 184 (1230)
T KOG0952|consen 106 FSFEEFNRIQSEVFPVAY-KSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKF 184 (1230)
T ss_pred ccHHHHHHHHHHhhhhhh-cCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHH
Confidence 47899999999 999997 57889999999999999998655532 237899999999999999888
Q ss_pred Hh----cCCceeEeeCCeecc---cCCCceEEEceeeccc-----------cCCccEEEEecCcccCCCCCChhHHHHH-
Q 010836 122 NK----ANVSCDLITGQEREE---VDGAKHRAVTVEMADV-----------VSDYDCAVIDEIQMLGCKTRGFSFTRAL- 182 (499)
Q Consensus 122 ~~----~g~~~~~~~g~~~~~---~~~~~~iv~T~e~~~~-----------l~~~~~iViDEah~~~~~~~g~~~~~~l- 182 (499)
.+ +|++|..+||+..-. ...++++|.|||++|. .+.++++||||+|.+.+ +||.....++
T Consensus 185 ~kkl~~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd-~RGpvlEtiVa 263 (1230)
T KOG0952|consen 185 SKKLAPLGISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHD-DRGPVLETIVA 263 (1230)
T ss_pred hhhcccccceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcC-cccchHHHHHH
Confidence 74 589999999986532 4478999999999975 37799999999999987 7999875443
Q ss_pred -----hccccccceEeecCCCchHHHHHHHHcCCe-----EEEEeeeecCCCCcccccc---------ccc---------
Q 010836 183 -----LGICANELHLCGDPAAVPLIQQILQVTGDD-----VKVQSYERLSPLVPLNVPL---------GSF--------- 234 (499)
Q Consensus 183 -----l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~l---------~~l--------- 234 (499)
...+...++++|.++++|++.+++.+++.. +.+...+|+.|+.....-. ..+
T Consensus 264 Rtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~ 343 (1230)
T KOG0952|consen 264 RTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVV 343 (1230)
T ss_pred HHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHH
Confidence 334567889999999999999999988764 2333445566554321100 001
Q ss_pred cccC-CCCEEEEe-eHHHHHHHHHHHHHcC----------------------CCeEEEEcCCCCHHHHHHHHHHhcCCCC
Q 010836 235 SNIQ-TGDCIVTF-SRHAIYRLKKAIESRG----------------------KHLCSIVYGSLPPETRTRQATRFNDASS 290 (499)
Q Consensus 235 ~~~~-~~~~iv~~-s~~~~~~l~~~L~~~~----------------------~~~v~~~hg~l~~~~R~~~~~~f~~~~g 290 (499)
..+. +.++++|+ ++.++.+.|+.|.+.. .....++|+||..++|..+++.|.. |
T Consensus 344 e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~--G 421 (1230)
T KOG0952|consen 344 EFLQEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKE--G 421 (1230)
T ss_pred HHHHcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhc--C
Confidence 1113 34455555 8888888888876531 1248899999999999999999999 9
Q ss_pred CccEEEecchhhccccccccEEEEcccccccCcc--ccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC-CHHHHHhhh
Q 010836 291 EFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE--LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE-DLPLLHKSL 367 (499)
Q Consensus 291 ~~~iLvaT~~~~~Gidipv~~VI~~~~~~~~~~~--~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~-~~~~~~~~~ 367 (499)
.++||+||..++.|+|+|..+||..+.+.||... ....+..+.+|..|||||.+.+ ..|..+.+.+. ...++..++
T Consensus 422 ~i~vL~cTaTLAwGVNLPA~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPqFd-~~G~giIiTt~dkl~~Y~sLl 500 (1230)
T KOG0952|consen 422 HIKVLCCTATLAWGVNLPAYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFD-SSGEGIIITTRDKLDHYESLL 500 (1230)
T ss_pred CceEEEecceeeeccCCcceEEEecCCcccccccCceeeehHHHHHHHHhccCCCCCC-CCceEEEEecccHHHHHHHHH
Confidence 9999999999999999999999999999999874 6677889999999999998876 44655444443 456777777
Q ss_pred CCCCc
Q 010836 368 LEPSP 372 (499)
Q Consensus 368 ~~~~~ 372 (499)
....+
T Consensus 501 ~~~~p 505 (1230)
T KOG0952|consen 501 TGQNP 505 (1230)
T ss_pred cCCCh
Confidence 65543
No 50
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.3e-36 Score=273.86 Aligned_cols=294 Identities=18% Similarity=0.159 Sum_probs=222.5
Q ss_pred CcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEEEEccHHH
Q 010836 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLRL 112 (499)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~-------~~~~l~l~P~r~ 112 (499)
|-.++...+.+. ||..|+++|+ .+|.+ +.++|++.-|..|+|||-++..++++ .-++++++|||+
T Consensus 92 Lkr~LLmgIfe~-----G~ekPSPiQeesIPia--LtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtre 164 (459)
T KOG0326|consen 92 LKRELLMGIFEK-----GFEKPSPIQEESIPIA--LTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRE 164 (459)
T ss_pred hhHHHHHHHHHh-----ccCCCCCcccccccee--ecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecch
Confidence 355666666666 9999999999 99999 77999999999999999998555443 236799999999
Q ss_pred HHHHHHHHHHh----cCCceeEeeCCeeccc------CCCceEEEce-eeccc-------cCCccEEEEecCcccCCCCC
Q 010836 113 LAWEVAKRLNK----ANVSCDLITGQEREEV------DGAKHRAVTV-EMADV-------VSDYDCAVIDEIQMLGCKTR 174 (499)
Q Consensus 113 La~q~~~~l~~----~g~~~~~~~g~~~~~~------~~~~~iv~T~-e~~~~-------l~~~~~iViDEah~~~~~~~ 174 (499)
||.|+.+.+.+ .|+.+.+.+|+..... +...++++|| +++|+ +++..++|+||||.+++.++
T Consensus 165 lALQtSqvc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~~F 244 (459)
T KOG0326|consen 165 LALQTSQVCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSVDF 244 (459)
T ss_pred hhHHHHHHHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhchhh
Confidence 99999877765 4788888888764332 2345667888 44443 58889999999999998877
Q ss_pred ChhHHHHHhccccccceEeecCCCchHHHHHHHH-cCCeEEEE-----------eeeecCCCCccccccc-cccccCCCC
Q 010836 175 GFSFTRALLGICANELHLCGDPAAVPLIQQILQV-TGDDVKVQ-----------SYERLSPLVPLNVPLG-SFSNIQTGD 241 (499)
Q Consensus 175 g~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~-----------~~~~~~~~~~~~~~l~-~l~~~~~~~ 241 (499)
+...+..+.-++.....++.+.+..-.++.++.. ....+.+. .|+.......+..-+. .+.++.-.+
T Consensus 245 ~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~qKvhCLntLfskLqINQ 324 (459)
T KOG0326|consen 245 QPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQ 324 (459)
T ss_pred hhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechhhhhhhHHHHHHHhcccc
Confidence 7777777777776655555544433344444432 23333332 2222222111122222 223445566
Q ss_pred EEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEccccc
Q 010836 242 CIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK 319 (499)
Q Consensus 242 ~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~ 319 (499)
+|+|| |.+.++-+|+.+.+.|. .+.++|+.|-++.|..++..|++ |.++.|||||.+.+|||++ +..||++|.
T Consensus 325 sIIFCNS~~rVELLAkKITelGy-scyyiHakM~Q~hRNrVFHdFr~--G~crnLVctDL~TRGIDiqavNvVINFDf-- 399 (459)
T KOG0326|consen 325 SIIFCNSTNRVELLAKKITELGY-SCYYIHAKMAQEHRNRVFHDFRN--GKCRNLVCTDLFTRGIDIQAVNVVINFDF-- 399 (459)
T ss_pred eEEEeccchHhHHHHHHHHhccc-hhhHHHHHHHHhhhhhhhhhhhc--cccceeeehhhhhcccccceeeEEEecCC--
Confidence 66666 89999999999999988 99999999999999999999999 9999999999999999997 999999999
Q ss_pred ccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEc
Q 010836 320 FDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 356 (499)
Q Consensus 320 ~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~ 356 (499)
|.+.++|+||+||+||+|.- |.++.+.
T Consensus 400 -------pk~aEtYLHRIGRsGRFGhl---GlAInLi 426 (459)
T KOG0326|consen 400 -------PKNAETYLHRIGRSGRFGHL---GLAINLI 426 (459)
T ss_pred -------CCCHHHHHHHccCCccCCCc---ceEEEEE
Confidence 55999999999999999987 8776553
No 51
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=8.8e-34 Score=274.42 Aligned_cols=299 Identities=19% Similarity=0.185 Sum_probs=229.1
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH------------cCCCEEE
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE------------SSSSGIY 106 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~------------~~~~~l~ 106 (499)
.++..+....... .|..+|++|. ++|.+ +.+++|+-+|-||||||-+++.+.. +++-++|
T Consensus 229 gfDkqLm~airk~-----Ey~kptpiq~qalpta--lsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vi 301 (731)
T KOG0339|consen 229 GFDKQLMTAIRKS-----EYEKPTPIQCQALPTA--LSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVI 301 (731)
T ss_pred CchHHHHHHHhhh-----hcccCCcccccccccc--cccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEE
Confidence 4588888888887 8999999999 99998 7799999999999999999864442 1235699
Q ss_pred EccHHHHHHHHHHHHHhc----CCceeEeeCCeecc------cCCCceEEEceeec-c-------ccCCccEEEEecCcc
Q 010836 107 CGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMA-D-------VVSDYDCAVIDEIQM 168 (499)
Q Consensus 107 l~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~-~-------~l~~~~~iViDEah~ 168 (499)
|+|||+||.|++...+++ |+.+..++|+...+ ..++.+|||||+.+ + .+.++.++|+||++.
T Consensus 302 lvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadr 381 (731)
T KOG0339|consen 302 LVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADR 381 (731)
T ss_pred EeccHHHHHHHHHHHHHhhhhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhh
Confidence 999999999999887764 78888888865433 24788999999543 3 258999999999999
Q ss_pred cCCCCCChhHHHHHhccccccceEeecCCCchHHHHHHH-HcCCeEEEEeeeecCC----------CCccccc----ccc
Q 010836 169 LGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQ-VTGDDVKVQSYERLSP----------LVPLNVP----LGS 233 (499)
Q Consensus 169 ~~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~----------~~~~~~~----l~~ 233 (499)
|.+..+.++...+.-.+.++...++.+.+....+++++. .+++.+.+..-.--.. ....... +..
T Consensus 382 mfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgean~dITQ~V~V~~s~~~Kl~wl~~~ 461 (731)
T KOG0339|consen 382 MFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEANEDITQTVSVCPSEEKKLNWLLRH 461 (731)
T ss_pred hhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhccccchhheeeeccCcHHHHHHHHHH
Confidence 998844444445555566676677777666555555553 3445444433211000 0000111 122
Q ss_pred ccc-cCCCCEEEEee-HHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-cc
Q 010836 234 FSN-IQTGDCIVTFS-RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-IS 310 (499)
Q Consensus 234 l~~-~~~~~~iv~~s-~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~ 310 (499)
|.. ...|++++|.| +..+++++..|.-.+. ++..+||++.+.+|.+++..|+. +...|||+||++.+|+||| +.
T Consensus 462 L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~-~v~llhgdkdqa~rn~~ls~fKk--k~~~VlvatDvaargldI~~ik 538 (731)
T KOG0339|consen 462 LVEFSSEGKVLIFVTKKADAEEIAANLKLKGF-NVSLLHGDKDQAERNEVLSKFKK--KRKPVLVATDVAARGLDIPSIK 538 (731)
T ss_pred hhhhccCCcEEEEEeccCCHHHHHHHhccccc-eeeeecCchhhHHHHHHHHHHhh--cCCceEEEeeHhhcCCCccccc
Confidence 222 25678888886 6778999999987776 99999999999999999999999 8999999999999999997 99
Q ss_pred EEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCH
Q 010836 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL 360 (499)
Q Consensus 311 ~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~ 360 (499)
.||++|+ ..++..+.||+||+||.|.+ |+.|.+..+..
T Consensus 539 TVvnyD~---------ardIdththrigrtgRag~k---GvayTlvTeKD 576 (731)
T KOG0339|consen 539 TVVNYDF---------ARDIDTHTHRIGRTGRAGEK---GVAYTLVTEKD 576 (731)
T ss_pred eeecccc---------cchhHHHHHHhhhccccccc---ceeeEEechhh
Confidence 9999999 44999999999999999988 99988877653
No 52
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.4e-34 Score=282.51 Aligned_cols=302 Identities=21% Similarity=0.196 Sum_probs=216.4
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCC-ceEEEEccCCccHHHHHHHHHHc-----------------
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVR-KVILHVGPTNSGKTHQALSRLES----------------- 100 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~-~~vli~apTGsGKT~~~l~~l~~----------------- 100 (499)
.++..+..++... ||..||++|. .+|.+ ..+ .|++..|.||||||++|-.++..
T Consensus 187 ~lp~~iL~aL~~~-----gFs~Pt~IQsl~lp~a--i~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~ 259 (731)
T KOG0347|consen 187 FLPMEILRALSNL-----GFSRPTEIQSLVLPAA--IRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSA 259 (731)
T ss_pred CCCHHHHHHHHhc-----CCCCCccchhhcccHh--hccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHh
Confidence 5889999999999 9999999999 99998 555 99999999999999997332221
Q ss_pred -CCC--EEEEccHHHHHHHHHHHHHh----cCCceeEeeCCeec------ccCCCceEEEceeec-----------cccC
Q 010836 101 -SSS--GIYCGPLRLLAWEVAKRLNK----ANVSCDLITGQERE------EVDGAKHRAVTVEMA-----------DVVS 156 (499)
Q Consensus 101 -~~~--~l~l~P~r~La~q~~~~l~~----~g~~~~~~~g~~~~------~~~~~~~iv~T~e~~-----------~~l~ 156 (499)
+.+ +||+.|||+||.|+.+.+.. -++.+..++|+... ....+.++|+||..+ ..+.
T Consensus 260 k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k 339 (731)
T KOG0347|consen 260 KYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFK 339 (731)
T ss_pred ccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhh
Confidence 234 79999999999999999875 38889999997432 233678889999433 1247
Q ss_pred CccEEEEecCcccCCCCCChh--HHHHHhccc-----cccceEeecCCCch----------------------HHHHHHH
Q 010836 157 DYDCAVIDEIQMLGCKTRGFS--FTRALLGIC-----ANELHLCGDPAAVP----------------------LIQQILQ 207 (499)
Q Consensus 157 ~~~~iViDEah~~~~~~~g~~--~~~~ll~l~-----~~~~~~~~~~~~~~----------------------~~~~l~~ 207 (499)
++.++|+||+|+|... |+. ++.+|--+. .....++.+. +.. .++.++.
T Consensus 340 ~vkcLVlDEaDRmvek--ghF~Els~lL~~L~e~~~~~qrQTlVFSA-Tlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk 416 (731)
T KOG0347|consen 340 KVKCLVLDEADRMVEK--GHFEELSKLLKHLNEEQKNRQRQTLVFSA-TLTLVLQQPLSSSRKKKDKEDELNAKIQHLMK 416 (731)
T ss_pred hceEEEEccHHHHhhh--ccHHHHHHHHHHhhhhhcccccceEEEEE-EeehhhcChhHHhhhccchhhhhhHHHHHHHH
Confidence 8999999999999955 765 333332222 1112222221 111 1233333
Q ss_pred HcCC--eEEEEeeeec-------------CCCCccccccccccccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcC
Q 010836 208 VTGD--DVKVQSYERL-------------SPLVPLNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYG 271 (499)
Q Consensus 208 ~~~~--~~~~~~~~~~-------------~~~~~~~~~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg 271 (499)
..|- ...+....+. .+....+-.+..+....+|..+||+ +.+.+.+++-.|..... ...++|+
T Consensus 417 ~ig~~~kpkiiD~t~q~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTlVF~NsId~vKRLt~~L~~L~i-~p~~LHA 495 (731)
T KOG0347|consen 417 KIGFRGKPKIIDLTPQSATASTLTESLIECPPLEKDLYLYYFLTRYPGRTLVFCNSIDCVKRLTVLLNNLDI-PPLPLHA 495 (731)
T ss_pred HhCccCCCeeEecCcchhHHHHHHHHhhcCCccccceeEEEEEeecCCceEEEechHHHHHHHHHHHhhcCC-CCchhhH
Confidence 3321 1112111110 1111112222223333456655555 99999999999998877 8999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcE
Q 010836 272 SLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 350 (499)
Q Consensus 272 ~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g 350 (499)
.|.+..|.+.+++|++ ..-.||||||+++||+||| |.+||+|.+ |.+.+.|+||.||++|++.. |
T Consensus 496 ~M~QKqRLknLEkF~~--~~~~VLiaTDVAARGLDIp~V~HVIHYqV---------PrtseiYVHRSGRTARA~~~---G 561 (731)
T KOG0347|consen 496 SMIQKQRLKNLEKFKQ--SPSGVLIATDVAARGLDIPGVQHVIHYQV---------PRTSEIYVHRSGRTARANSE---G 561 (731)
T ss_pred HHHHHHHHHhHHHHhc--CCCeEEEeehhhhccCCCCCcceEEEeec---------CCccceeEecccccccccCC---C
Confidence 9999999999999999 8888999999999999998 999999999 77999999999999999987 8
Q ss_pred EEEEEcCC-CHHHHHhh
Q 010836 351 EVTCLDSE-DLPLLHKS 366 (499)
Q Consensus 351 ~~~~~~~~-~~~~~~~~ 366 (499)
+-+.+... +...+.++
T Consensus 562 vsvml~~P~e~~~~~KL 578 (731)
T KOG0347|consen 562 VSVMLCGPQEVGPLKKL 578 (731)
T ss_pred eEEEEeChHHhHHHHHH
Confidence 76666544 44444443
No 53
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=3.8e-33 Score=311.65 Aligned_cols=334 Identities=18% Similarity=0.201 Sum_probs=224.8
Q ss_pred EEccCCccHHHHHHHHH----Hc-------------CCCEEEEccHHHHHHHHHHHHHh----------------cCCce
Q 010836 82 HVGPTNSGKTHQALSRL----ES-------------SSSGIYCGPLRLLAWEVAKRLNK----------------ANVSC 128 (499)
Q Consensus 82 i~apTGsGKT~~~l~~l----~~-------------~~~~l~l~P~r~La~q~~~~l~~----------------~g~~~ 128 (499)
|++|||||||++|..++ .. +.++|||+|+++|+.|+.++++. .++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57999999999985433 21 23689999999999999998752 36788
Q ss_pred eEeeCCeeccc------CCCceEEEceeecc---------ccCCccEEEEecCcccCCCCCChhHHHHH---hccccccc
Q 010836 129 DLITGQEREEV------DGAKHRAVTVEMAD---------VVSDYDCAVIDEIQMLGCKTRGFSFTRAL---LGICANEL 190 (499)
Q Consensus 129 ~~~~g~~~~~~------~~~~~iv~T~e~~~---------~l~~~~~iViDEah~~~~~~~g~~~~~~l---l~l~~~~~ 190 (499)
...+|+..... ..++++++|||.+. .++++++|||||+|.+.+..||..+...+ ..+.....
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~~~~~ 160 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALLHTSA 160 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhCCCCC
Confidence 88999754322 35678899997663 35789999999999999888898765433 33445667
Q ss_pred eEeecCCCchHHHHHHHHcCCe--EEEEee--eec------CCCCccc------------------cc----c--ccccc
Q 010836 191 HLCGDPAAVPLIQQILQVTGDD--VKVQSY--ERL------SPLVPLN------------------VP----L--GSFSN 236 (499)
Q Consensus 191 ~~~~~~~~~~~~~~l~~~~~~~--~~~~~~--~~~------~~~~~~~------------------~~----l--~~l~~ 236 (499)
++++.++++...+.+..+.+.. ..+... .+. .+..... .. + ..+..
T Consensus 161 QrIgLSATI~n~eevA~~L~g~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~ 240 (1490)
T PRK09751 161 QRIGLSATVRSASDVAAFLGGDRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDE 240 (1490)
T ss_pred eEEEEEeeCCCHHHHHHHhcCCCCEEEECCCCCcccceEEEEecCchhhccccccccccccchhhhhhhhHHHHHHHHHH
Confidence 8899999998888888877532 222110 000 0000000 00 0 00111
Q ss_pred -cCCCCEEEEe-eHHHHHHHHHHHHHcCC--------------------------------CeEEEEcCCCCHHHHHHHH
Q 010836 237 -IQTGDCIVTF-SRHAIYRLKKAIESRGK--------------------------------HLCSIVYGSLPPETRTRQA 282 (499)
Q Consensus 237 -~~~~~~iv~~-s~~~~~~l~~~L~~~~~--------------------------------~~v~~~hg~l~~~~R~~~~ 282 (499)
...+++|||+ |++.++.++..|++... ..+..|||+|++++|..++
T Consensus 241 i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE 320 (1490)
T PRK09751 241 VLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITE 320 (1490)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHH
Confidence 1345566666 99999999999976421 1267899999999999999
Q ss_pred HHhcCCCCCccEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCH-
Q 010836 283 TRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL- 360 (499)
Q Consensus 283 ~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~- 360 (499)
+.|++ |++++||||+.+++||||+ ++.||+++. |.+..+|+||+||+||...+.+.|.++.....+.
T Consensus 321 ~~fK~--G~LrvLVATssLELGIDIg~VDlVIq~gs---------P~sVas~LQRiGRAGR~~gg~s~gli~p~~r~dll 389 (1490)
T PRK09751 321 QALKS--GELRCVVATSSLELGIDMGAVDLVIQVAT---------PLSVASGLQRIGRAGHQVGGVSKGLFFPRTRRDLV 389 (1490)
T ss_pred HHHHh--CCceEEEeCcHHHccCCcccCCEEEEeCC---------CCCHHHHHHHhCCCCCCCCCccEEEEEeCcHHHHH
Confidence 99999 9999999999999999997 999999998 7799999999999999743223344333332222
Q ss_pred ---HHHHhhhCCCCchhhhcCCCCh---HHHHHHHHhcCCCccHHHHHHHHHHhcccCCCccccChHHHHHHHHhhcc
Q 010836 361 ---PLLHKSLLEPSPMLESAGLFPN---FDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQ 432 (499)
Q Consensus 361 ---~~~~~~~~~~~~~i~~~~l~~~---~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 432 (499)
..++.+++...+++. ....|. ..++...... .+.+..++.+.+.. ...|.-.+.+++..+.++|..
T Consensus 390 e~~~~ve~~l~g~iE~~~-~p~nplDVLaqqiva~a~~-~~~~~d~l~~~vrr----a~pf~~L~~~~f~~vl~~L~~ 461 (1490)
T PRK09751 390 DSAVIVECMFAGRLENLT-PPHNPLDVLAQQTVAAAAM-DALQVDEWYSRVRR----AAPWKDLPRRVFDATLDMLSG 461 (1490)
T ss_pred hhHHHHHHHhcCCCCccC-CCCChHHHHHHHHHHHHhc-CCCCHHHHHHHhhc----cCCcccCCHHHHHHHHHHHhc
Confidence 124456666666533 222222 3344443332 34455555544443 335555566778888888764
No 54
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=100.00 E-value=1.5e-33 Score=268.90 Aligned_cols=296 Identities=20% Similarity=0.203 Sum_probs=210.8
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------------CCCEE
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------------SSSGI 105 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~-------------~~~~l 105 (499)
.|++.+..++.+. ||..+|-+|+ ++|.+ +.++|++..|.||||||.+|+.++.+ +..++
T Consensus 25 gLD~RllkAi~~l-----G~ekpTlIQs~aIpla--LEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~ 97 (569)
T KOG0346|consen 25 GLDSRLLKAITKL-----GWEKPTLIQSSAIPLA--LEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAV 97 (569)
T ss_pred CCCHHHHHHHHHh-----CcCCcchhhhcccchh--hcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeE
Confidence 5899999999999 9999999999 99998 77999999999999999998655532 23679
Q ss_pred EEccHHHHHHHHHHHHHhc------CCceeEeeCCee------cccCCCceEEEceeec---------cccCCccEEEEe
Q 010836 106 YCGPLRLLAWEVAKRLNKA------NVSCDLITGQER------EEVDGAKHRAVTVEMA---------DVVSDYDCAVID 164 (499)
Q Consensus 106 ~l~P~r~La~q~~~~l~~~------g~~~~~~~g~~~------~~~~~~~~iv~T~e~~---------~~l~~~~~iViD 164 (499)
+++|||+||+|++..+.++ .+++.-+..... .-.+.+.++|+||..+ ..+..++++|+|
T Consensus 98 iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvD 177 (569)
T KOG0346|consen 98 ILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVD 177 (569)
T ss_pred EEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEec
Confidence 9999999999999998864 222222222111 1123567888888332 345889999999
Q ss_pred cCcccCCCCCChh--HHHHHhccccccceEeecCCCchHHHHHHHHcC-CeEEE-------------EeeeecCCCCccc
Q 010836 165 EIQMLGCKTRGFS--FTRALLGICANELHLCGDPAAVPLIQQILQVTG-DDVKV-------------QSYERLSPLVPLN 228 (499)
Q Consensus 165 Eah~~~~~~~g~~--~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~-------------~~~~~~~~~~~~~ 228 (499)
|||.+.. +||. +....-.+++.-.-++.+.+..+.+..+-...- ..+.+ ..|+-........
T Consensus 178 EADLlls--fGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy~v~cse~DKf 255 (569)
T KOG0346|consen 178 EADLLLS--FGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQYQVKCSEEDKF 255 (569)
T ss_pred hhhhhhh--cccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEEEEEeccchhH
Confidence 9999994 4775 333344444433333333333344544443221 11111 1111111111111
Q ss_pred ccccc---ccccCCCCEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecc------
Q 010836 229 VPLGS---FSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD------ 299 (499)
Q Consensus 229 ~~l~~---l~~~~~~~~iv~~s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~------ 299 (499)
..+.. +.-+.++.+||+++.+.++++.-.|++.|. +.++++|.||..-|..++++|+. |-++|+||||
T Consensus 256 lllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGi-ksciLNseLP~NSR~Hii~QFNk--G~YdivIAtD~s~~~~ 332 (569)
T KOG0346|consen 256 LLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGI-KSCILNSELPANSRCHIIEQFNK--GLYDIVIATDDSADGD 332 (569)
T ss_pred HHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCc-HhhhhcccccccchhhHHHHhhC--cceeEEEEccCccchh
Confidence 11111 122234444445599999999999999888 99999999999999999999999 9999999999
Q ss_pred -----------------------------hhhccccc-cccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCc
Q 010836 300 -----------------------------AIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV 349 (499)
Q Consensus 300 -----------------------------~~~~Gidi-pv~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~ 349 (499)
-.+||||+ .|.+|+++|+ |.+...|+||+||++|.+..
T Consensus 333 ~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~---------P~t~~sYIHRvGRTaRg~n~--- 400 (569)
T KOG0346|consen 333 KLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDF---------PETVTSYIHRVGRTARGNNK--- 400 (569)
T ss_pred hhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCC---------CCchHHHHHhccccccCCCC---
Confidence 24579999 5999999999 78999999999999999988
Q ss_pred EEEEEEcCCC
Q 010836 350 GEVTCLDSED 359 (499)
Q Consensus 350 g~~~~~~~~~ 359 (499)
|.++.|...+
T Consensus 401 GtalSfv~P~ 410 (569)
T KOG0346|consen 401 GTALSFVSPK 410 (569)
T ss_pred CceEEEecch
Confidence 8887776554
No 55
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=2.7e-33 Score=305.19 Aligned_cols=281 Identities=19% Similarity=0.218 Sum_probs=197.1
Q ss_pred ccCCCCCchhc-cchHHHhc----CCceEEEEccCCccHHHHHHHH----HHcCCCEEEEccHHHHHHHHHHHHHh----
Q 010836 57 FDFTDLTRPHT-WYPLARKK----VRKVILHVGPTNSGKTHQALSR----LESSSSGIYCGPLRLLAWEVAKRLNK---- 123 (499)
Q Consensus 57 ~~~~~l~~~q~-~~~~~~~~----~~~~vli~apTGsGKT~~~l~~----l~~~~~~l~l~P~r~La~q~~~~l~~---- 123 (499)
++| .+|+.|. +++.+..- .+.+.+++||||||||.+|+.+ +..+.+++|++||++||.|+++.+++
T Consensus 448 ~~f-~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~ 526 (926)
T TIGR00580 448 FPF-EETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFAN 526 (926)
T ss_pred CCC-CCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhcc
Confidence 477 4999999 99988542 2368999999999999997544 45678999999999999999998885
Q ss_pred cCCceeEeeCCeecc----------cCCCceEEEceeecc---ccCCccEEEEecCcccCCCCCChhHHHHHhccccccc
Q 010836 124 ANVSCDLITGQEREE----------VDGAKHRAVTVEMAD---VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANEL 190 (499)
Q Consensus 124 ~g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~---~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~ 190 (499)
+++++..++|..... ....+++|+|++.+. .+.+++++||||+|++.. .....+..+. ...
T Consensus 527 ~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~llVIDEahrfgv-----~~~~~L~~~~-~~~ 600 (926)
T TIGR00580 527 FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGLLIIDEEQRFGV-----KQKEKLKELR-TSV 600 (926)
T ss_pred CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCEEEeecccccch-----hHHHHHHhcC-CCC
Confidence 367777787753211 124678889986663 358899999999999643 3333443333 344
Q ss_pred eEeecCCC-chHHHHHHHHcCC-eEEEEeeeecC--CC-----Ccccccc-ccc-ccc-CCCCEEEEe-eHHHHHHHHHH
Q 010836 191 HLCGDPAA-VPLIQQILQVTGD-DVKVQSYERLS--PL-----VPLNVPL-GSF-SNI-QTGDCIVTF-SRHAIYRLKKA 257 (499)
Q Consensus 191 ~~~~~~~~-~~~~~~l~~~~~~-~~~~~~~~~~~--~~-----~~~~~~l-~~l-~~~-~~~~~iv~~-s~~~~~~l~~~ 257 (499)
+++..++| .+-.-... ..+. +..+....... +. ......+ ..+ ... ..+++++|+ +.+.++.+++.
T Consensus 601 ~vL~~SATpiprtl~~~-l~g~~d~s~I~~~p~~R~~V~t~v~~~~~~~i~~~i~~el~~g~qv~if~n~i~~~e~l~~~ 679 (926)
T TIGR00580 601 DVLTLSATPIPRTLHMS-MSGIRDLSIIATPPEDRLPVRTFVMEYDPELVREAIRRELLRGGQVFYVHNRIESIEKLATQ 679 (926)
T ss_pred CEEEEecCCCHHHHHHH-HhcCCCcEEEecCCCCccceEEEEEecCHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHH
Confidence 55555554 23221111 1111 11111100000 00 0001111 111 112 345666666 78999999999
Q ss_pred HHHc-CCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHh
Q 010836 258 IESR-GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQ 335 (499)
Q Consensus 258 L~~~-~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Q 335 (499)
|++. ...++..+||+|++++|.++++.|++ |+.+|||||+++++|+|+| +++||+++.+.| +.++|.|
T Consensus 680 L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~--Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~--------gls~l~Q 749 (926)
T TIGR00580 680 LRELVPEARIAIAHGQMTENELEEVMLEFYK--GEFQVLVCTTIIETGIDIPNANTIIIERADKF--------GLAQLYQ 749 (926)
T ss_pred HHHhCCCCeEEEecCCCCHHHHHHHHHHHHc--CCCCEEEECChhhcccccccCCEEEEecCCCC--------CHHHHHH
Confidence 9875 34589999999999999999999999 9999999999999999998 999999887432 4678999
Q ss_pred hhccCCCCCCCCCcEEEEEEcCC
Q 010836 336 IAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 336 r~GRagR~g~~~~~g~~~~~~~~ 358 (499)
|+||+||.|.. |.|+.+.++
T Consensus 750 r~GRvGR~g~~---g~aill~~~ 769 (926)
T TIGR00580 750 LRGRVGRSKKK---AYAYLLYPH 769 (926)
T ss_pred HhcCCCCCCCC---eEEEEEECC
Confidence 99999999987 999988754
No 56
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.6e-34 Score=287.30 Aligned_cols=355 Identities=19% Similarity=0.222 Sum_probs=264.8
Q ss_pred cCCceEEEEccCCccHHHHHHHHHHcCC--------C-EE-EEccHHHHHHHHHHHHHh-c---CCceeEeeCCeecccC
Q 010836 75 KVRKVILHVGPTNSGKTHQALSRLESSS--------S-GI-YCGPLRLLAWEVAKRLNK-A---NVSCDLITGQEREEVD 140 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l~~l~~~~--------~-~l-~l~P~r~La~q~~~~l~~-~---g~~~~~~~g~~~~~~~ 140 (499)
..+..|||+|.||||||++.+|.|.++| . .| +..|+|..|..+++|+.. + |-.|++....+....+
T Consensus 269 n~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd~ti~e 348 (1172)
T KOG0926|consen 269 NENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFDGTIGE 348 (1172)
T ss_pred hcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEeccccCC
Confidence 3588999999999999999999998754 2 23 349999999999999873 3 5566666555555556
Q ss_pred CCceEEEceeec------c-ccCCccEEEEecCcccCCCCCChhHHHHHhccccc----------------cceEeecCC
Q 010836 141 GAKHRAVTVEMA------D-VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN----------------ELHLCGDPA 197 (499)
Q Consensus 141 ~~~~iv~T~e~~------~-~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~----------------~~~~~~~~~ 197 (499)
++.+.++|-..+ | .|.+|++|||||||+.+-. +++|+|+..+ ++.++-+++
T Consensus 349 ~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvn------TDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSA 422 (1172)
T KOG0926|consen 349 DTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVN------TDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSA 422 (1172)
T ss_pred CceeEEecchHHHHHHHHhHhhhhceeEEechhhhccch------HHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEee
Confidence 788999998554 3 3599999999999999866 8888887632 344555555
Q ss_pred CchHH-----HHHHHHcCC-------eEEEE-eeeecCCCCcccccc----ccccccCCCCEEEEe-eHHHHHHHHHHHH
Q 010836 198 AVPLI-----QQILQVTGD-------DVKVQ-SYERLSPLVPLNVPL----GSFSNIQTGDCIVTF-SRHAIYRLKKAIE 259 (499)
Q Consensus 198 ~~~~~-----~~l~~~~~~-------~~~~~-~~~~~~~~~~~~~~l----~~l~~~~~~~~iv~~-s~~~~~~l~~~L~ 259 (499)
++.+- +.++...+. .+++. .+.+..+.++..++. ....++++|.++||. .+.++..+++.|+
T Consensus 423 TLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLR 502 (1172)
T KOG0926|consen 423 TLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLR 502 (1172)
T ss_pred eEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHH
Confidence 44221 122222222 22221 223333434433322 334567899999999 5999999999997
Q ss_pred Hc------------------------------------------------------------------------------
Q 010836 260 SR------------------------------------------------------------------------------ 261 (499)
Q Consensus 260 ~~------------------------------------------------------------------------------ 261 (499)
+.
T Consensus 503 K~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~~~~De~~~~nge~ 582 (1172)
T KOG0926|consen 503 KRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFNALADENGSVNGEP 582 (1172)
T ss_pred hhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhhccccccccccCCc
Confidence 64
Q ss_pred --------------------CCCeEEEEcCCCCHHHHHHHHHHhcC-CCCCccEEEecchhhcccccc-ccEEEEccccc
Q 010836 262 --------------------GKHLCSIVYGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKK 319 (499)
Q Consensus 262 --------------------~~~~v~~~hg~l~~~~R~~~~~~f~~-~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~ 319 (499)
+...|.++|+-|+.+ ++.+-|.+ |.|.+-++|||++++++++|| |++||+++..|
T Consensus 583 e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~---~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgIkYVVD~Gr~K 659 (1172)
T KOG0926|consen 583 EKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTE---KQMRVFDEVPKGERLCVVATNVAETSLTIPGIKYVVDCGRVK 659 (1172)
T ss_pred ccchhhhchhhhhccCCCCCCceEEeehhhhcCHH---HhhhhccCCCCCceEEEEeccchhcccccCCeeEEEeccchh
Confidence 012388899999998 45556665 569999999999999999998 99999999876
Q ss_pred ---ccCc------cccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCHHHHH-hhhCCCCchhhhcCCCChHHHHHHH
Q 010836 320 ---FDGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLH-KSLLEPSPMLESAGLFPNFDLIYMY 389 (499)
Q Consensus 320 ---~~~~------~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~i~~~~l~~~~~~l~~~ 389 (499)
||.. ...|+|.++.-||+|||||.|+ |.||.+|+.. .+. .+.....|+|.+.+....+++++.+
T Consensus 660 ~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgp----GHcYRLYSSA--Vf~~~Fe~fS~PEIlk~Pve~lvLqMKsM 733 (1172)
T KOG0926|consen 660 ERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGP----GHCYRLYSSA--VFSNDFEEFSLPEILKKPVESLVLQMKSM 733 (1172)
T ss_pred hhccccccCceeEEEEeeeccccchhccccCCCCC----CceeehhhhH--HhhcchhhhccHHHhhCcHHHHHHHHHhc
Confidence 6653 4689999999999999999998 8999999875 555 4667889999999999999999975
Q ss_pred Hhc----------CCCccHHHHHHHHHHhcccCCCccccChHHHHHHHHhhccCCCCHHH-HHhhhcCCCCC
Q 010836 390 SRL----------HPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHE-KYLFCISPVDM 450 (499)
Q Consensus 390 ~~~----------~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~-~~~~~~~p~~~ 450 (499)
.-. +....|..+.+.+..+.+++.. +.++.+|+.|+.+|++++- +++....-.++
T Consensus 734 nI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~------g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~ 799 (1172)
T KOG0926|consen 734 NIDKVVNFPFPTPPDRSALEKAERRLKALGALDSN------GGLTKLGKAMSLFPLSPRFSKMLATSDQHNL 799 (1172)
T ss_pred CccceecCCCCCCccHHHHHHHHHHHHHhcccccc------CCcccccchhcccccChhHHHHHHHHHhhcc
Confidence 532 3346889999999999999885 4799999999999988866 66655544443
No 57
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=1.2e-32 Score=306.17 Aligned_cols=281 Identities=16% Similarity=0.208 Sum_probs=196.8
Q ss_pred ccCCCCCchhc-cchHHHhc----CCceEEEEccCCccHHHHHHH----HHHcCCCEEEEccHHHHHHHHHHHHHh----
Q 010836 57 FDFTDLTRPHT-WYPLARKK----VRKVILHVGPTNSGKTHQALS----RLESSSSGIYCGPLRLLAWEVAKRLNK---- 123 (499)
Q Consensus 57 ~~~~~l~~~q~-~~~~~~~~----~~~~vli~apTGsGKT~~~l~----~l~~~~~~l~l~P~r~La~q~~~~l~~---- 123 (499)
+.| .+|+.|. +++.+..- ...+++++||||||||.+|+. .+..+.+++|++||++||.|+++.+.+
T Consensus 597 ~~~-~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~ 675 (1147)
T PRK10689 597 FPF-ETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 (1147)
T ss_pred CCC-CCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 367 6999999 99988542 137999999999999998643 345678999999999999999999875
Q ss_pred cCCceeEeeCCeecc----------cCCCceEEEceeeccc---cCCccEEEEecCcccCCCCCChhHHHHHhccccccc
Q 010836 124 ANVSCDLITGQEREE----------VDGAKHRAVTVEMADV---VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANEL 190 (499)
Q Consensus 124 ~g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~~---l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~ 190 (499)
+++++..++|..... ....+++|+|++++.. +.+++++||||+|++. ......+..+. ...
T Consensus 676 ~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~~~L~lLVIDEahrfG-----~~~~e~lk~l~-~~~ 749 (1147)
T PRK10689 676 WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDVKWKDLGLLIVDEEHRFG-----VRHKERIKAMR-ADV 749 (1147)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCHhhCCEEEEechhhcc-----hhHHHHHHhcC-CCC
Confidence 356777777643211 1246788999976642 4789999999999973 33334443333 344
Q ss_pred eEeecCCC-chHHHHHHHH-cCCeEEEEeeeecCCCCc-------ccccc--cccccc-CCCCEEEEe-eHHHHHHHHHH
Q 010836 191 HLCGDPAA-VPLIQQILQV-TGDDVKVQSYERLSPLVP-------LNVPL--GSFSNI-QTGDCIVTF-SRHAIYRLKKA 257 (499)
Q Consensus 191 ~~~~~~~~-~~~~~~l~~~-~~~~~~~~~~~~~~~~~~-------~~~~l--~~l~~~-~~~~~iv~~-s~~~~~~l~~~ 257 (499)
+++..++| .+....+... ..+...+.. ........ ....+ ..+.+. ..+++++|+ +++.++.+++.
T Consensus 750 qvLl~SATpiprtl~l~~~gl~d~~~I~~-~p~~r~~v~~~~~~~~~~~~k~~il~el~r~gqv~vf~n~i~~ie~la~~ 828 (1147)
T PRK10689 750 DILTLTATPIPRTLNMAMSGMRDLSIIAT-PPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAER 828 (1147)
T ss_pred cEEEEcCCCCHHHHHHHHhhCCCcEEEec-CCCCCCCceEEEEecCcHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHH
Confidence 55555544 4433333221 112111111 00000000 00000 011112 345666666 78999999999
Q ss_pred HHHcC-CCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHh
Q 010836 258 IESRG-KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQ 335 (499)
Q Consensus 258 L~~~~-~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Q 335 (499)
|.+.. ..++..+||+|++++|.++++.|++ |+.+|||||+++++|+|+| +++||..+...| +..+|+|
T Consensus 829 L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~--Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~f--------glaq~~Q 898 (1147)
T PRK10689 829 LAELVPEARIAIGHGQMRERELERVMNDFHH--QRFNVLVCTTIIETGIDIPTANTIIIERADHF--------GLAQLHQ 898 (1147)
T ss_pred HHHhCCCCcEEEEeCCCCHHHHHHHHHHHHh--cCCCEEEECchhhcccccccCCEEEEecCCCC--------CHHHHHH
Confidence 98862 3489999999999999999999999 9999999999999999997 999997655333 4678999
Q ss_pred hhccCCCCCCCCCcEEEEEEcCC
Q 010836 336 IAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 336 r~GRagR~g~~~~~g~~~~~~~~ 358 (499)
|+||+||.|.. |.|+.+++.
T Consensus 899 r~GRvGR~g~~---g~a~ll~~~ 918 (1147)
T PRK10689 899 LRGRVGRSHHQ---AYAWLLTPH 918 (1147)
T ss_pred HhhccCCCCCc---eEEEEEeCC
Confidence 99999999988 999988754
No 58
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=100.00 E-value=1.5e-33 Score=264.76 Aligned_cols=295 Identities=17% Similarity=0.162 Sum_probs=215.3
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHH-----H----------cCCC
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL-----E----------SSSS 103 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l-----~----------~~~~ 103 (499)
.++..+.+.++.. |+..+|++|- -+|.+ +.+++.+..|-||||||+++..++ . +++-
T Consensus 176 KFP~~~L~~lk~K-----GI~~PTpIQvQGlPvv--LsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~ 248 (610)
T KOG0341|consen 176 KFPKPLLRGLKKK-----GIVHPTPIQVQGLPVV--LSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPY 248 (610)
T ss_pred cCCHHHHHHHHhc-----CCCCCCceeecCcceE--eecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCe
Confidence 3677788888888 9999999999 99999 779999999999999999963222 1 2457
Q ss_pred EEEEccHHHHHHHHHHHHHhc-------C---CceeEeeCCeec------ccCCCceEEEceeec-cc-------cCCcc
Q 010836 104 GIYCGPLRLLAWEVAKRLNKA-------N---VSCDLITGQERE------EVDGAKHRAVTVEMA-DV-------VSDYD 159 (499)
Q Consensus 104 ~l~l~P~r~La~q~~~~l~~~-------g---~~~~~~~g~~~~------~~~~~~~iv~T~e~~-~~-------l~~~~ 159 (499)
+++++|+|+||.|+++.+.++ | +++.++.|+... ...+..++|+||..+ +. +.-.+
T Consensus 249 gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CR 328 (610)
T KOG0341|consen 249 GLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACR 328 (610)
T ss_pred eEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHH
Confidence 899999999999999877643 3 345555565332 123567778898433 33 35678
Q ss_pred EEEEecCcccCCCCCChh--HHHHHhccccccceEeecCCCchHHHHHHHHcCCeEEEEeeeecC--CCCcc--------
Q 010836 160 CAVIDEIQMLGCKTRGFS--FTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLS--PLVPL-------- 227 (499)
Q Consensus 160 ~iViDEah~~~~~~~g~~--~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~-------- 227 (499)
++++||||++.|. ||. ...++.-+......++.+.+....++.++...-......+..|.- .++..
T Consensus 329 yL~lDEADRmiDm--GFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQevEyVkq 406 (610)
T KOG0341|consen 329 YLTLDEADRMIDM--GFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEVEYVKQ 406 (610)
T ss_pred HhhhhhHHHHhhc--cchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHHHHHHh
Confidence 9999999999987 654 333333344444555555555556666654432222222222211 11110
Q ss_pred cccc----ccccccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhh
Q 010836 228 NVPL----GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG 302 (499)
Q Consensus 228 ~~~l----~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~ 302 (499)
+..+ ..+.+. ...+++|+ .+.+++.+.++|--.+. .++.+||+-++++|...++.|+. |+.+||||||+++
T Consensus 407 EaKiVylLeCLQKT-~PpVLIFaEkK~DVD~IhEYLLlKGV-EavaIHGGKDQedR~~ai~afr~--gkKDVLVATDVAS 482 (610)
T KOG0341|consen 407 EAKIVYLLECLQKT-SPPVLIFAEKKADVDDIHEYLLLKGV-EAVAIHGGKDQEDRHYAIEAFRA--GKKDVLVATDVAS 482 (610)
T ss_pred hhhhhhHHHHhccC-CCceEEEeccccChHHHHHHHHHccc-eeEEeecCcchhHHHHHHHHHhc--CCCceEEEecchh
Confidence 1111 222222 33456666 89999999999987777 89999999999999999999999 9999999999999
Q ss_pred cccccc-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 303 MGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 303 ~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
.|+|+| |.+|||||+ |-...+|+||+||+||.|.. |..++|...+
T Consensus 483 KGLDFp~iqHVINyDM---------P~eIENYVHRIGRTGRsg~~---GiATTfINK~ 528 (610)
T KOG0341|consen 483 KGLDFPDIQHVINYDM---------PEEIENYVHRIGRTGRSGKT---GIATTFINKN 528 (610)
T ss_pred ccCCCccchhhccCCC---------hHHHHHHHHHhcccCCCCCc---ceeeeeeccc
Confidence 999997 999999999 77999999999999999998 9988776554
No 59
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.2e-31 Score=286.47 Aligned_cols=278 Identities=19% Similarity=0.253 Sum_probs=192.7
Q ss_pred cCCCCCchhc-cchHHHhcC----CceEEEEccCCccHHHHHHHH----HHcCCCEEEEccHHHHHHHHHHHHHhc----
Q 010836 58 DFTDLTRPHT-WYPLARKKV----RKVILHVGPTNSGKTHQALSR----LESSSSGIYCGPLRLLAWEVAKRLNKA---- 124 (499)
Q Consensus 58 ~~~~l~~~q~-~~~~~~~~~----~~~vli~apTGsGKT~~~l~~----l~~~~~~l~l~P~r~La~q~~~~l~~~---- 124 (499)
+| .||+.|+ +++.+..-. ..+++++||||||||.+|+.+ +..+.+++|++||++||.|+++.++++
T Consensus 259 ~f-~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~ 337 (681)
T PRK10917 259 PF-ELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPL 337 (681)
T ss_pred CC-CCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 55 5999999 999886421 248999999999999997544 345668999999999999999998853
Q ss_pred CCceeEeeCCeecc----------cCCCceEEEceeecc---ccCCccEEEEecCcccCCCCCChhHHHHHhccccccce
Q 010836 125 NVSCDLITGQEREE----------VDGAKHRAVTVEMAD---VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELH 191 (499)
Q Consensus 125 g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~---~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~~ 191 (499)
|+++.+++|+.... .....++++|+..+. .+.+++++||||+|++... ....+... ....+
T Consensus 338 ~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvVIDE~Hrfg~~-----qr~~l~~~-~~~~~ 411 (681)
T PRK10917 338 GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVIIDEQHRFGVE-----QRLALREK-GENPH 411 (681)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEEEechhhhhHH-----HHHHHHhc-CCCCC
Confidence 78999999976521 124788899986664 2689999999999997543 22233222 22234
Q ss_pred EeecCCCc-hHHHHHHHHcCCeEEEEeeee-cC---CCC-------cccccccccc-cc-CCCCEEEEe-e--------H
Q 010836 192 LCGDPAAV-PLIQQILQVTGDDVKVQSYER-LS---PLV-------PLNVPLGSFS-NI-QTGDCIVTF-S--------R 248 (499)
Q Consensus 192 ~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~-~~---~~~-------~~~~~l~~l~-~~-~~~~~iv~~-s--------~ 248 (499)
++..+++. +....+. ..++ ..+..... +. +.. .....+..+. .. ...++++|+ . .
T Consensus 412 iL~~SATp~prtl~~~-~~g~-~~~s~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~~~~g~q~~v~~~~ie~s~~l~~ 489 (681)
T PRK10917 412 VLVMTATPIPRTLAMT-AYGD-LDVSVIDELPPGRKPITTVVIPDSRRDEVYERIREEIAKGRQAYVVCPLIEESEKLDL 489 (681)
T ss_pred EEEEeCCCCHHHHHHH-HcCC-CceEEEecCCCCCCCcEEEEeCcccHHHHHHHHHHHHHcCCcEEEEEcccccccchhH
Confidence 45555442 2221111 1222 11111100 00 000 0011111111 11 234566665 2 3
Q ss_pred HHHHHHHHHHHHcC-CCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccccccCcccc
Q 010836 249 HAIYRLKKAIESRG-KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELR 326 (499)
Q Consensus 249 ~~~~~l~~~L~~~~-~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~ 326 (499)
..++++++.|.+.. ..++..+||+|++++|..+++.|++ |+.+|||||+++++|+|+| +++||+++.++|
T Consensus 490 ~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~--g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~------ 561 (681)
T PRK10917 490 QSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKA--GEIDILVATTVIEVGVDVPNATVMVIENAERF------ 561 (681)
T ss_pred HHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHc--CCCCEEEECcceeeCcccCCCcEEEEeCCCCC------
Confidence 45677788887653 2589999999999999999999999 9999999999999999998 999999988542
Q ss_pred ccChhhHHhhhccCCCCCCCCCcEEEEEEcC
Q 010836 327 DLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (499)
Q Consensus 327 p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~ 357 (499)
..+.+.||+||+||.|.. |.|+.+..
T Consensus 562 --gls~lhQ~~GRvGR~g~~---g~~ill~~ 587 (681)
T PRK10917 562 --GLAQLHQLRGRVGRGAAQ---SYCVLLYK 587 (681)
T ss_pred --CHHHHHHHhhcccCCCCc---eEEEEEEC
Confidence 478899999999999987 99998874
No 60
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-33 Score=270.92 Aligned_cols=301 Identities=20% Similarity=0.226 Sum_probs=196.6
Q ss_pred hhccCCCccccCCCCCchhc-cchHHHhc-------CCceEEEEccCCccHHHHHHHHH----HcC----CCEEEEccHH
Q 010836 48 YCSGSGMKKFDFTDLTRPHT-WYPLARKK-------VRKVILHVGPTNSGKTHQALSRL----ESS----SSGIYCGPLR 111 (499)
Q Consensus 48 ~l~~~~~~~~~~~~l~~~q~-~~~~~~~~-------~~~~vli~apTGsGKT~~~l~~l----~~~----~~~l~l~P~r 111 (499)
.+..+ +++.+.++|. .+|.+... ..+|++|.||||||||++|..++ ... -+++|++|++
T Consensus 151 ~l~k~-----~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr 225 (620)
T KOG0350|consen 151 LLVKM-----AISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTR 225 (620)
T ss_pred HHHHh-----hcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHH
Confidence 35555 8999999998 66665211 37899999999999999974433 222 2789999999
Q ss_pred HHHHHHHHHHHhc----CCceeEeeCCeecc-----------cCCCceEEEceee-ccc--------cCCccEEEEecCc
Q 010836 112 LLAWEVAKRLNKA----NVSCDLITGQEREE-----------VDGAKHRAVTVEM-ADV--------VSDYDCAVIDEIQ 167 (499)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~g~~~~~-----------~~~~~~iv~T~e~-~~~--------l~~~~~iViDEah 167 (499)
+|+.|+++.|.++ |+.|..++|+.... ....+++|+||.. .+. +++++++||||||
T Consensus 226 ~L~~QV~~~f~~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEAD 305 (620)
T KOG0350|consen 226 ELALQVYDTFKRLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEAD 305 (620)
T ss_pred HHHHHHHHHHHHhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHH
Confidence 9999999999875 66677777754321 1134788999943 343 4789999999999
Q ss_pred ccCCCCCChh-HHHHHhcccccc---------ceEeec-------------------------CCC----chHHHHHHHH
Q 010836 168 MLGCKTRGFS-FTRALLGICANE---------LHLCGD-------------------------PAA----VPLIQQILQV 208 (499)
Q Consensus 168 ~~~~~~~g~~-~~~~ll~l~~~~---------~~~~~~-------------------------~~~----~~~~~~l~~~ 208 (499)
++++. .+. |...++.+..+. +..... +++ ...+.++--.
T Consensus 306 Rll~q--sfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~ 383 (620)
T KOG0350|consen 306 RLLDQ--SFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLH 383 (620)
T ss_pred HHHHH--HHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcC
Confidence 99864 222 433332222110 000000 000 0000111000
Q ss_pred cCCeEEEE-----eeeecCCCC-------cccccc--ccccccCCCCEEEEe--eHHHHHHHHHHHH-HcC--CCeEEEE
Q 010836 209 TGDDVKVQ-----SYERLSPLV-------PLNVPL--GSFSNIQTGDCIVTF--SRHAIYRLKKAIE-SRG--KHLCSIV 269 (499)
Q Consensus 209 ~~~~~~~~-----~~~~~~~~~-------~~~~~l--~~l~~~~~~~~iv~~--s~~~~~~l~~~L~-~~~--~~~v~~~ 269 (499)
.+.-..+. .|.-+..+. ....++ ..+....+..-++|| +...+.+++..|+ ..+ ..++..+
T Consensus 384 ~Prl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~ 463 (620)
T KOG0350|consen 384 IPRLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEF 463 (620)
T ss_pred CCceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhh
Confidence 01001111 111111110 011111 112222333334444 7889999999887 322 2367779
Q ss_pred cCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccccc-cccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCC
Q 010836 270 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFP 348 (499)
Q Consensus 270 hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidi-pv~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~ 348 (499)
.|+++.+.|.+.++.|.. |++.+|||||+++||+|+ +|+.||+|++ |.+..+|+||+||++|+|+.
T Consensus 464 t~~l~~k~r~k~l~~f~~--g~i~vLIcSD~laRGiDv~~v~~VINYd~---------P~~~ktyVHR~GRTARAgq~-- 530 (620)
T KOG0350|consen 464 TGQLNGKRRYKMLEKFAK--GDINVLICSDALARGIDVNDVDNVINYDP---------PASDKTYVHRAGRTARAGQD-- 530 (620)
T ss_pred hhhhhHHHHHHHHHHHhc--CCceEEEehhhhhcCCcccccceEeecCC---------CchhhHHHHhhcccccccCC--
Confidence 999999999999999999 999999999999999999 5999999999 88999999999999999998
Q ss_pred cEEEEEEcCC-CHHHHHhhhCC
Q 010836 349 VGEVTCLDSE-DLPLLHKSLLE 369 (499)
Q Consensus 349 ~g~~~~~~~~-~~~~~~~~~~~ 369 (499)
|.|+.+-.. +...|.++++.
T Consensus 531 -G~a~tll~~~~~r~F~klL~~ 551 (620)
T KOG0350|consen 531 -GYAITLLDKHEKRLFSKLLKK 551 (620)
T ss_pred -ceEEEeeccccchHHHHHHHH
Confidence 999877554 34556666544
No 61
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=100.00 E-value=1.1e-32 Score=277.31 Aligned_cols=308 Identities=21% Similarity=0.271 Sum_probs=243.9
Q ss_pred CCCchhc-cchHHHhcCCceEEEEccCCccHHHHH----HHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCe
Q 010836 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA----LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQE 135 (499)
Q Consensus 61 ~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~----l~~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~ 135 (499)
.+-+.|. ++..+ -++..|+++|.|.+|||.+| .+.|.+..++||..|-++|.+|-|+.+...--.|++.||+.
T Consensus 129 ~LDpFQ~~aI~Ci--dr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~DVGLMTGDV 206 (1041)
T KOG0948|consen 129 TLDPFQSTAIKCI--DRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFKDVGLMTGDV 206 (1041)
T ss_pred ccCchHhhhhhhh--cCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhcccceeecce
Confidence 4677788 88877 56999999999999999996 45566778999999999999999999987668899999998
Q ss_pred ecccCCCceEEEceeecc--------ccCCccEEEEecCcccCCCCCChhHHHHHhccccccceEeecCCCchHHHHHHH
Q 010836 136 REEVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQ 207 (499)
Q Consensus 136 ~~~~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~ 207 (499)
... +++..+|+|+|++. .++.+.+||+||+|-|-|.+||-.|...++-++ +.++++..++++|+..++++
T Consensus 207 TIn-P~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkERGVVWEETIIllP-~~vr~VFLSATiPNA~qFAe 284 (1041)
T KOG0948|consen 207 TIN-PDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKERGVVWEETIILLP-DNVRFVFLSATIPNARQFAE 284 (1041)
T ss_pred eeC-CCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccccceeeeeeEEecc-ccceEEEEeccCCCHHHHHH
Confidence 776 46788999998874 358899999999999999999999988776654 56788889999999988888
Q ss_pred HcC----CeEE-EEeeeecCCCCcccc------------------------ccccc------------------------
Q 010836 208 VTG----DDVK-VQSYERLSPLVPLNV------------------------PLGSF------------------------ 234 (499)
Q Consensus 208 ~~~----~~~~-~~~~~~~~~~~~~~~------------------------~l~~l------------------------ 234 (499)
|.. ..+. +...+|+.|+..... .+..+
T Consensus 285 WI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~ 364 (1041)
T KOG0948|consen 285 WICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKANKKGRKGGTGGK 364 (1041)
T ss_pred HHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccccccccccccCCcCCC
Confidence 753 2222 222334444331100 00000
Q ss_pred --------------cccCCCCEEEE-eeHHHHHHHHHHHHHc--------------------------------------
Q 010836 235 --------------SNIQTGDCIVT-FSRHAIYRLKKAIESR-------------------------------------- 261 (499)
Q Consensus 235 --------------~~~~~~~~iv~-~s~~~~~~l~~~L~~~-------------------------------------- 261 (499)
....-..+||| ||+++|+.+|-.+.+.
T Consensus 365 ~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPL 444 (1041)
T KOG0948|consen 365 GPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPL 444 (1041)
T ss_pred CCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHH
Confidence 00011123444 4999999988877654
Q ss_pred CCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccccccccEEEEcccccccCccccccChhhHHhhhccCC
Q 010836 262 GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAG 341 (499)
Q Consensus 262 ~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidipv~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRag 341 (499)
...++.+||||+-|--+.-++=.|.+ |-+++|+||.++++|+|+|.+.|++....||||...+|+|.-+|+|+.||||
T Consensus 445 L~RGIGIHHsGLLPIlKE~IEILFqE--GLvKvLFATETFsiGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAG 522 (1041)
T KOG0948|consen 445 LRRGIGIHHSGLLPILKEVIEILFQE--GLVKVLFATETFSIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAG 522 (1041)
T ss_pred HHhccccccccchHHHHHHHHHHHhc--cHHHHHHhhhhhhhccCCcceeEEEeeccccCCcceeeecccceEEeccccc
Confidence 12359999999999999889999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCcEEEEEEcCCCH--HHHHhhhCCCCchhh
Q 010836 342 RYGSKFPVGEVTCLDSEDL--PLLHKSLLEPSPMLE 375 (499)
Q Consensus 342 R~g~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~i~ 375 (499)
|.|.+ ..|+|+.+.++.+ ...+.++......+.
T Consensus 523 RRG~D-drGivIlmiDekm~~~~ak~m~kG~aD~Ln 557 (1041)
T KOG0948|consen 523 RRGID-DRGIVILMIDEKMEPQVAKDMLKGSADPLN 557 (1041)
T ss_pred ccCCC-CCceEEEEecCcCCHHHHHHHhcCCCcchh
Confidence 99986 8899999988865 455667777665544
No 62
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.98 E-value=4.4e-31 Score=282.30 Aligned_cols=288 Identities=18% Similarity=0.256 Sum_probs=195.3
Q ss_pred HHHhhhccCCCccccCCCCCchhc-cchHHHhcC----CceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHH
Q 010836 44 IIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKV----RKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLA 114 (499)
Q Consensus 44 ~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~----~~~vli~apTGsGKT~~~l~~l----~~~~~~l~l~P~r~La 114 (499)
.+.++++.. +| .||+.|+ +++.+..-. ..+.+++||||||||.+|+.++ ..+.+++|++||++||
T Consensus 224 ~~~~~~~~l-----pf-~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA 297 (630)
T TIGR00643 224 LLTKFLASL-----PF-KLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILA 297 (630)
T ss_pred HHHHHHHhC-----CC-CCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHH
Confidence 344555555 67 6999999 999885421 1368999999999999975443 4567899999999999
Q ss_pred HHHHHHHHhc----CCceeEeeCCeecc----------cCCCceEEEceeecc---ccCCccEEEEecCcccCCCCCChh
Q 010836 115 WEVAKRLNKA----NVSCDLITGQEREE----------VDGAKHRAVTVEMAD---VVSDYDCAVIDEIQMLGCKTRGFS 177 (499)
Q Consensus 115 ~q~~~~l~~~----g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~---~l~~~~~iViDEah~~~~~~~g~~ 177 (499)
.|+++.++++ |+++.+++|+.... ..+.+++++|+..+. .+.+++++||||+|++...++
T Consensus 298 ~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~~~l~lvVIDEaH~fg~~qr--- 374 (630)
T TIGR00643 298 EQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEKVEFKRLALVIIDEQHRFGVEQR--- 374 (630)
T ss_pred HHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhccccccccceEEEechhhccHHHH---
Confidence 9999998853 78999999975421 124688899986654 357899999999999764322
Q ss_pred HHHHHhcccc--ccceEeecCCC-chHHHHHHHHcCCeEEEEeeee-c---CC-------CCccccccccccc-c-CCCC
Q 010836 178 FTRALLGICA--NELHLCGDPAA-VPLIQQILQVTGDDVKVQSYER-L---SP-------LVPLNVPLGSFSN-I-QTGD 241 (499)
Q Consensus 178 ~~~~ll~l~~--~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~-~---~~-------~~~~~~~l~~l~~-~-~~~~ 241 (499)
..+..... ...+++..+++ .+..-.+ ...++ +.+..... + .+ .......+..+.+ . ...+
T Consensus 375 --~~l~~~~~~~~~~~~l~~SATp~prtl~l-~~~~~-l~~~~i~~~p~~r~~i~~~~~~~~~~~~~~~~i~~~l~~g~q 450 (630)
T TIGR00643 375 --KKLREKGQGGFTPHVLVMSATPIPRTLAL-TVYGD-LDTSIIDELPPGRKPITTVLIKHDEKDIVYEFIEEEIAKGRQ 450 (630)
T ss_pred --HHHHHhcccCCCCCEEEEeCCCCcHHHHH-HhcCC-cceeeeccCCCCCCceEEEEeCcchHHHHHHHHHHHHHhCCc
Confidence 22222211 12334444444 2211111 11121 11110000 0 00 0000111111211 1 2445
Q ss_pred EEEEe-e--------HHHHHHHHHHHHHc-CCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-cc
Q 010836 242 CIVTF-S--------RHAIYRLKKAIESR-GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-IS 310 (499)
Q Consensus 242 ~iv~~-s--------~~~~~~l~~~L~~~-~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~ 310 (499)
+++|+ . ...++++++.|.+. ....+..+||+|++++|..+++.|++ |+.+|||||+++++|+|+| ++
T Consensus 451 ~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~--g~~~ILVaT~vie~GvDiP~v~ 528 (630)
T TIGR00643 451 AYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFRE--GEVDILVATTVIEVGVDVPNAT 528 (630)
T ss_pred EEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHc--CCCCEEEECceeecCcccCCCc
Confidence 66655 3 25577788888764 34579999999999999999999999 9999999999999999998 99
Q ss_pred EEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcC
Q 010836 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (499)
Q Consensus 311 ~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~ 357 (499)
.||+++.++| +.+.+.||+||+||.|.. |.|+.+..
T Consensus 529 ~VIi~~~~r~--------gls~lhQ~~GRvGR~g~~---g~~il~~~ 564 (630)
T TIGR00643 529 VMVIEDAERF--------GLSQLHQLRGRVGRGDHQ---SYCLLVYK 564 (630)
T ss_pred EEEEeCCCcC--------CHHHHHHHhhhcccCCCC---cEEEEEEC
Confidence 9999887432 578999999999999987 99988873
No 63
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=4.5e-31 Score=277.96 Aligned_cols=328 Identities=21% Similarity=0.249 Sum_probs=245.2
Q ss_pred hhccCccCCCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc----C-----
Q 010836 32 EKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES----S----- 101 (499)
Q Consensus 32 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~----~----- 101 (499)
.+.+-.+..++..-..++. |...+.++|. .+..+. ....++++|||||+|||.+|+..+++ +
T Consensus 287 ~Ekl~~iselP~Wnq~aF~-------g~~sLNrIQS~v~daAl-~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dg 358 (1674)
T KOG0951|consen 287 EEKLVKISELPKWNQPAFF-------GKQSLNRIQSKVYDAAL-RGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDG 358 (1674)
T ss_pred cceeEeecCCcchhhhhcc-------cchhhhHHHHHHHHHHh-cCcCcEEEeccCCCCchHHHHHHHHHHHhccccccc
Confidence 3333444455555555554 5677999999 666553 56788999999999999998655432 1
Q ss_pred ------CCEEEEccHHHHHHHHHHHHH----hcCCceeEeeCCeec---ccCCCceEEEceeecccc----------CCc
Q 010836 102 ------SSGIYCGPLRLLAWEVAKRLN----KANVSCDLITGQERE---EVDGAKHRAVTVEMADVV----------SDY 158 (499)
Q Consensus 102 ------~~~l~l~P~r~La~q~~~~l~----~~g~~~~~~~g~~~~---~~~~~~~iv~T~e~~~~l----------~~~ 158 (499)
.+++|++|.++|++++...+. .+|+.|.-.||+... ....+.++++|||..|.+ +-+
T Consensus 359 s~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlv 438 (1674)
T KOG0951|consen 359 SVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLV 438 (1674)
T ss_pred ceecccceEEEEeeHHHHHHHHHHHHHhhccccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHH
Confidence 378999999999999987554 579999999998653 455789999999999754 458
Q ss_pred cEEEEecCcccCCCCCChhHHHHHhcc------ccccceEeecCCCchHHHHHHHHcCCeE----EEEeeeecCCCCccc
Q 010836 159 DCAVIDEIQMLGCKTRGFSFTRALLGI------CANELHLCGDPAAVPLIQQILQVTGDDV----KVQSYERLSPLVPLN 228 (499)
Q Consensus 159 ~~iViDEah~~~~~~~g~~~~~~ll~l------~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~ 228 (499)
+++||||+|++.| +||.....+.... .....+++|.++++|+..+.....+... .+...+|+.|+....
T Consensus 439 rLlIIDEIHLLhD-dRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~ 517 (1674)
T KOG0951|consen 439 RLLIIDEIHLLHD-DRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQY 517 (1674)
T ss_pred HHHhhhhhhhccc-ccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCCccceE
Confidence 9999999999877 7999876554322 2346789999999999988887555433 334456777765431
Q ss_pred ------cccc------------cccccCCCCEEEEe-eHHHHHHHHHHHHHc----------------------------
Q 010836 229 ------VPLG------------SFSNIQTGDCIVTF-SRHAIYRLKKAIESR---------------------------- 261 (499)
Q Consensus 229 ------~~l~------------~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~---------------------------- 261 (499)
..+. .+....+++++||. ||+++.+.|+.++..
T Consensus 518 Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~ 597 (1674)
T KOG0951|consen 518 IGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQA 597 (1674)
T ss_pred eccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcc
Confidence 1111 11223567888888 999999988888732
Q ss_pred --------CCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccccccccEEEEcccccccCcc--ccccChh
Q 010836 262 --------GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE--LRDLTVP 331 (499)
Q Consensus 262 --------~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidipv~~VI~~~~~~~~~~~--~~p~s~~ 331 (499)
...++++||+||+..+|...++.|.. |.++|+|+|..++.|+|+|.+.||.-+...||+.. ..++++.
T Consensus 598 kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~--g~iqvlvstatlawgvnlpahtViikgtqvy~pekg~w~elsp~ 675 (1674)
T KOG0951|consen 598 KNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFAD--GHIQVLVSTATLAWGVNLPAHTVIIKGTQVYDPEKGRWTELSPL 675 (1674)
T ss_pred cChhHHHHhhccceeeccCCCcchHHHHHHHHhc--CceeEEEeehhhhhhcCCCcceEEecCccccCcccCccccCCHH
Confidence 12358999999999999999999999 99999999999999999999999999999999984 4557999
Q ss_pred hHHhhhccCCCCCCC-CCcEEEEEEcCCCHHHHHhhhCCCC
Q 010836 332 EVKQIAGRAGRYGSK-FPVGEVTCLDSEDLPLLHKSLLEPS 371 (499)
Q Consensus 332 ~~~Qr~GRagR~g~~-~~~g~~~~~~~~~~~~~~~~~~~~~ 371 (499)
+.+||.|||||.+.+ ++.|.++ ....+..++...++...
T Consensus 676 dv~qmlgragrp~~D~~gegiii-t~~se~qyyls~mn~qL 715 (1674)
T KOG0951|consen 676 DVMQMLGRAGRPQYDTCGEGIII-TDHSELQYYLSLMNQQL 715 (1674)
T ss_pred HHHHHHhhcCCCccCcCCceeec-cCchHhhhhHHhhhhcC
Confidence 999999999999876 2334333 33333445555554443
No 64
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=9.3e-31 Score=279.83 Aligned_cols=289 Identities=22% Similarity=0.309 Sum_probs=228.5
Q ss_pred CCCchhc-cchHHHhcCCceEEEEccCCccHHHHH----HHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCc----eeEe
Q 010836 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA----LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVS----CDLI 131 (499)
Q Consensus 61 ~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~----l~~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~----~~~~ 131 (499)
++-+.|+ ++-.+ ..+..|+++||||||||.++ -.++.++.+++|..|.++|.+|.++.+...-.. ++++
T Consensus 119 ~LD~fQ~~a~~~L--er~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~ 196 (1041)
T COG4581 119 ELDPFQQEAIAIL--ERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVADMVGLM 196 (1041)
T ss_pred CcCHHHHHHHHHH--hCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhhhhccce
Confidence 4566677 88777 66999999999999999995 355567788999999999999999999753233 4899
Q ss_pred eCCeecccCCCceEEEceeecc--------ccCCccEEEEecCcccCCCCCChhHHHHHhccccccceEeecCCCchHHH
Q 010836 132 TGQEREEVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQ 203 (499)
Q Consensus 132 ~g~~~~~~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~~~~~ 203 (499)
||+.... .+++++|+|+|.+. .+..+..||+||+|.+.|.+||..|...++.++. .+++++.++++++..
T Consensus 197 TGDv~IN-~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~-~v~~v~LSATv~N~~ 274 (1041)
T COG4581 197 TGDVSIN-PDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRERGVVWEEVIILLPD-HVRFVFLSATVPNAE 274 (1041)
T ss_pred ecceeeC-CCCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccccchhHHHHHHhcCC-CCcEEEEeCCCCCHH
Confidence 9998776 46889999997763 4588999999999999999999999999888764 567788889999999
Q ss_pred HHHHHcC-----CeEEEEeeeecCCCCcc--------------cc--------cccccc-------c-------------
Q 010836 204 QILQVTG-----DDVKVQSYERLSPLVPL--------------NV--------PLGSFS-------N------------- 236 (499)
Q Consensus 204 ~l~~~~~-----~~~~~~~~~~~~~~~~~--------------~~--------~l~~l~-------~------------- 236 (499)
++..|.+ +...+....|+.|+... .. ....+. +
T Consensus 275 EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~a~~~ 354 (1041)
T COG4581 275 EFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRETDDGDVGRYARRT 354 (1041)
T ss_pred HHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhccccCccccccccccc
Confidence 9988875 23334444455543311 00 000000 0
Q ss_pred ----------------------cC-CCCEEEEeeHHHHHHHHHHHHHc----------------------------C---
Q 010836 237 ----------------------IQ-TGDCIVTFSRHAIYRLKKAIESR----------------------------G--- 262 (499)
Q Consensus 237 ----------------------~~-~~~~iv~~s~~~~~~l~~~L~~~----------------------------~--- 262 (499)
.. -..++|+||++.|+..+..+... +
T Consensus 355 ~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii~~~i~~L~~ed~~lp~ 434 (1041)
T COG4581 355 KALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPL 434 (1041)
T ss_pred cccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHHHHHHhhcChhhhcCcc
Confidence 00 01234445999999877766521 0
Q ss_pred ---------CCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccccccccEEEEcccccccCccccccChhhH
Q 010836 263 ---------KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEV 333 (499)
Q Consensus 263 ---------~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidipv~~VI~~~~~~~~~~~~~p~s~~~~ 333 (499)
...+.+||++|=|..|..+.+.|.. |-++|++||.+++.|+|+|++.|++....||||...++++..+|
T Consensus 435 ~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~--GLvkvvFaTeT~s~GiNmPartvv~~~l~K~dG~~~r~L~~gEy 512 (1041)
T COG4581 435 QILEISALLLRGIAVHHAGLLPAIKELVEELFQE--GLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEY 512 (1041)
T ss_pred cHHHHHHHHhhhhhhhccccchHHHHHHHHHHhc--cceeEEeehhhhhhhcCCcccceeeeeeEEecCCceeecChhHH
Confidence 1136799999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCCCCCCCcEEEEEEc
Q 010836 334 KQIAGRAGRYGSKFPVGEVTCLD 356 (499)
Q Consensus 334 ~Qr~GRagR~g~~~~~g~~~~~~ 356 (499)
.|+.|||||.|-+ ..|.+++..
T Consensus 513 ~QmsGRAGRRGlD-~~G~vI~~~ 534 (1041)
T COG4581 513 TQMSGRAGRRGLD-VLGTVIVIE 534 (1041)
T ss_pred HHhhhhhcccccc-ccceEEEec
Confidence 9999999999986 778887773
No 65
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.97 E-value=9.5e-31 Score=263.59 Aligned_cols=267 Identities=15% Similarity=0.146 Sum_probs=178.0
Q ss_pred eEEEEccCCccHHHHHHHHHH------cCCCEEEEccHHHHHHHHHHHHHhc-CCceeEeeCCeec--------------
Q 010836 79 VILHVGPTNSGKTHQALSRLE------SSSSGIYCGPLRLLAWEVAKRLNKA-NVSCDLITGQERE-------------- 137 (499)
Q Consensus 79 ~vli~apTGsGKT~~~l~~l~------~~~~~l~l~P~r~La~q~~~~l~~~-g~~~~~~~g~~~~-------------- 137 (499)
++++.||||||||++++.+++ ..++++|++|+++|+.|+++++.+. |..++.++|....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEEFEH 80 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchhHHH
Confidence 589999999999999876664 2368899999999999999999975 6666655553210
Q ss_pred ----------ccCCCceEEEceeeccc--c------------CCccEEEEecCcccCCCCCChhHHHHHhccccccceEe
Q 010836 138 ----------EVDGAKHRAVTVEMADV--V------------SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLC 193 (499)
Q Consensus 138 ----------~~~~~~~iv~T~e~~~~--l------------~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~~~~ 193 (499)
.....+++++|++.+.. . ...+++||||+|.+.+..++. +...+-.+.....+++
T Consensus 81 ~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~-l~~~l~~l~~~~~~~i 159 (358)
T TIGR01587 81 LFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLAL-ILAVLEVLKDNDVPIL 159 (358)
T ss_pred HHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHH-HHHHHHHHHHcCCCEE
Confidence 00135688999865421 1 123799999999998653333 2222222233345566
Q ss_pred ecCCCch-HHHHHHHHcCCeEEE-----Eeeeec--CCC---C----ccccccccc-cc-cCCCCEEEEe-eHHHHHHHH
Q 010836 194 GDPAAVP-LIQQILQVTGDDVKV-----QSYERL--SPL---V----PLNVPLGSF-SN-IQTGDCIVTF-SRHAIYRLK 255 (499)
Q Consensus 194 ~~~~~~~-~~~~l~~~~~~~~~~-----~~~~~~--~~~---~----~~~~~l~~l-~~-~~~~~~iv~~-s~~~~~~l~ 255 (499)
..+++.+ .+.+++......... ....+. ... . .....+..+ .. ..+++++||+ +++.++.++
T Consensus 160 ~~SATlp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t~~~~~~~~ 239 (358)
T TIGR01587 160 LMSATLPKFLKEYAEKIGYVEFNEPLDLKEERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNTVDRAQEFY 239 (358)
T ss_pred EEecCchHHHHHHHhcCCCcccccCCCCccccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECCHHHHHHHH
Confidence 6666654 444444322211000 000000 000 0 000111111 11 1345677777 899999999
Q ss_pred HHHHHcCC-CeEEEEcCCCCHHHHHHH----HHHhcCCCCCccEEEecchhhccccccccEEEEcccccccCccccccCh
Q 010836 256 KAIESRGK-HLCSIVYGSLPPETRTRQ----ATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTV 330 (499)
Q Consensus 256 ~~L~~~~~-~~v~~~hg~l~~~~R~~~----~~~f~~~~g~~~iLvaT~~~~~Gidipv~~VI~~~~~~~~~~~~~p~s~ 330 (499)
+.|++.+. ..+..+||++++.+|.+. ++.|++ +..+|||||+++++|+|+|++.||++.. +.
T Consensus 240 ~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~--~~~~ilvaT~~~~~GiDi~~~~vi~~~~-----------~~ 306 (358)
T TIGR01587 240 QQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKK--NEKFVIVATQVIEASLDISADVMITELA-----------PI 306 (358)
T ss_pred HHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcC--CCCeEEEECcchhceeccCCCEEEEcCC-----------CH
Confidence 99987654 369999999999999764 788999 9999999999999999999999998754 57
Q ss_pred hhHHhhhccCCCCCCCC-CcEEEEEEcCCC
Q 010836 331 PEVKQIAGRAGRYGSKF-PVGEVTCLDSED 359 (499)
Q Consensus 331 ~~~~Qr~GRagR~g~~~-~~g~~~~~~~~~ 359 (499)
.+|+||+||+||.|.+. ..|.++.+....
T Consensus 307 ~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~ 336 (358)
T TIGR01587 307 DSLIQRLGRLHRYGRKNGENFEVYIITIAP 336 (358)
T ss_pred HHHHHHhccccCCCCCCCCCCeEEEEeecC
Confidence 89999999999998753 246777776543
No 66
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.97 E-value=7.9e-31 Score=277.53 Aligned_cols=378 Identities=19% Similarity=0.157 Sum_probs=268.4
Q ss_pred cchHHHhcCCceEEEEccCCccHHHHHHHHHHcC-------CCEEEEccHHHHHHHHHHHHHh-c----CCceeEeeCCe
Q 010836 68 WYPLARKKVRKVILHVGPTNSGKTHQALSRLESS-------SSGIYCGPLRLLAWEVAKRLNK-A----NVSCDLITGQE 135 (499)
Q Consensus 68 ~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~~-------~~~l~l~P~r~La~q~~~~l~~-~----g~~~~~~~g~~ 135 (499)
.+..+ .++++++++|.||+|||++.+|.+++. -++++-+|+|.-|..++++++. . |-.|++..+-+
T Consensus 181 Il~~i--~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~ 258 (924)
T KOG0920|consen 181 ILDAI--EENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLE 258 (924)
T ss_pred HHHHH--HhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeee
Confidence 55555 359999999999999999999998763 2445559999999999999984 2 55566555555
Q ss_pred ecccCCCceEEEceeec-------cccCCccEEEEecCcccCCCCCChhHHHHHhccccccceEeecCCCch--HHHHHH
Q 010836 136 REEVDGAKHRAVTVEMA-------DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVP--LIQQIL 206 (499)
Q Consensus 136 ~~~~~~~~~iv~T~e~~-------~~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~~--~~~~l~ 206 (499)
......+.+.+||+..+ ..+..+.++|+||+|+.+............+-.....++++-++++++ ..+.++
T Consensus 259 ~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~dae~fs~YF 338 (924)
T KOG0920|consen 259 SKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLDAELFSDYF 338 (924)
T ss_pred cccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecchHHHHHHh
Confidence 55555688999999443 456899999999999998652222211111112234556666666654 222222
Q ss_pred HHc------CCeEEEEeee-------------ecCCC----Cc------------------cccccccccc-cCCCCEEE
Q 010836 207 QVT------GDDVKVQSYE-------------RLSPL----VP------------------LNVPLGSFSN-IQTGDCIV 244 (499)
Q Consensus 207 ~~~------~~~~~~~~~~-------------~~~~~----~~------------------~~~~l~~l~~-~~~~~~iv 244 (499)
... |..+++..+. ...+. .. ....+..+.+ ...|.++|
T Consensus 339 ~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILV 418 (924)
T KOG0920|consen 339 GGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILV 418 (924)
T ss_pred CCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhcccCCCCceEEE
Confidence 211 1111221110 00000 00 0011112222 23667777
Q ss_pred Ee-eHHHHHHHHHHHHHcC------CCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcc
Q 010836 245 TF-SRHAIYRLKKAIESRG------KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 316 (499)
Q Consensus 245 ~~-s~~~~~~l~~~L~~~~------~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~ 316 (499)
|. +..++..+++.|.... ..-+.++|+.|+.++++.+++..-. |.++||+||++++.+|+|| |.+||+.+
T Consensus 419 FLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~--g~RKIIlaTNIAETSITIdDVvyVIDsG 496 (924)
T KOG0920|consen 419 FLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPK--GTRKIILATNIAETSITIDDVVYVIDSG 496 (924)
T ss_pred EcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCC--CcchhhhhhhhHhhcccccCeEEEEecC
Confidence 77 8999999999997532 2358899999999966655544444 8899999999999999995 99999998
Q ss_pred ccc---ccCc------cccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCHHHHHhhhC-CCCchhhhcCCCChHHHH
Q 010836 317 MKK---FDGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL-EPSPMLESAGLFPNFDLI 386 (499)
Q Consensus 317 ~~~---~~~~------~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~i~~~~l~~~~~~l 386 (499)
..| ||+. ...|+|.++..||.|||||... |.||.+++.. .++.+.. ...||+.+..+...++++
T Consensus 497 ~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~----G~cy~L~~~~--~~~~~~~~~q~PEilR~pL~~l~L~i 570 (924)
T KOG0920|consen 497 LVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRP----GICYHLYTRS--RYEKLMLAYQLPEILRTPLEELCLHI 570 (924)
T ss_pred eeeeeeecccCCcchhheeeccccchHHhcccccCccC----CeeEEeechh--hhhhcccccCChHHHhChHHHhhhee
Confidence 876 7775 4678899999999999999998 9999999876 6677666 999999999998888887
Q ss_pred HH------------HHhcCCCccHHHHHHHHHHhcccCCCccccChHHHHHHHHhhccCCCCHHH-HHhhhcCCCCCCCh
Q 010836 387 YM------------YSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHE-KYLFCISPVDMNDD 453 (499)
Q Consensus 387 ~~------------~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~-~~~~~~~p~~~~~~ 453 (499)
+. ..+.++...+..++..+....+++.. ++++.+|.+++.+|++..- |+.+-.+-++|-+|
T Consensus 571 K~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~------e~LT~LG~~la~lPvd~~igK~ll~g~if~cLdp 644 (924)
T KOG0920|consen 571 KVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDES------EELTPLGLHLASLPVDVRIGKLLLFGAIFGCLDP 644 (924)
T ss_pred eeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCc------ccchHHHHHHHhCCCccccchhheehhhccccch
Confidence 72 22346678889999999998888877 6899999999999987766 88877778888887
Q ss_pred HH-HHHHHH
Q 010836 454 IS-SQGLTQ 461 (499)
Q Consensus 454 ~~-~~~l~~ 461 (499)
.+ +.+.++
T Consensus 645 ~l~iaa~Ls 653 (924)
T KOG0920|consen 645 ALTIAAALS 653 (924)
T ss_pred hhhHHHHhc
Confidence 65 334433
No 67
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=6.1e-31 Score=276.25 Aligned_cols=297 Identities=17% Similarity=0.203 Sum_probs=220.7
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc------------CCCEEE
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES------------SSSGIY 106 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~------------~~~~l~ 106 (499)
+++..+...++++ ||..++++|. ++|.+ +.+++||.+|-||||||+.|+.++.. ++-+++
T Consensus 371 gl~~~il~tlkkl-----~y~k~~~IQ~qAiP~I--msGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li 443 (997)
T KOG0334|consen 371 GLSSKILETLKKL-----GYEKPTPIQAQAIPAI--MSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALI 443 (997)
T ss_pred CchHHHHHHHHHh-----cCCCCcchhhhhcchh--ccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEE
Confidence 5778888888888 9999999999 99999 88999999999999999999655532 235699
Q ss_pred EccHHHHHHHHHHHHHhc----CCceeEeeCCeecc------cCCCceEEEce-eeccc----------cCCccEEEEec
Q 010836 107 CGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTV-EMADV----------VSDYDCAVIDE 165 (499)
Q Consensus 107 l~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~-e~~~~----------l~~~~~iViDE 165 (499)
++|||+|+.|+.+.++.+ |+.+..++|+.... ..+..++|||| +|+++ +.++.++|+||
T Consensus 444 ~aPtrela~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~de 523 (997)
T KOG0334|consen 444 LAPTRELAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDE 523 (997)
T ss_pred EcCCHHHHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeech
Confidence 999999999999998864 88888888876543 23789999999 45554 36677999999
Q ss_pred CcccCCCCCChhHHHHHhccccccceEeecCCCchHHHHHHHH---cCCeEEEEe----------eeecCC-CCcccccc
Q 010836 166 IQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV---TGDDVKVQS----------YERLSP-LVPLNVPL 231 (499)
Q Consensus 166 ah~~~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~----------~~~~~~-~~~~~~~l 231 (499)
||.+.+....+..+.++-.+.+....++.+.+....+..+... .+....+.. ..+..+ ...+...+
T Consensus 524 aDrmfdmgfePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~~~e~eKf~kL 603 (997)
T KOG0334|consen 524 ADRMFDMGFEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVCAIENEKFLKL 603 (997)
T ss_pred hhhhheeccCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEecCchHHHHHH
Confidence 9999987555556665555544443333333322223333321 111111110 011111 00011111
Q ss_pred -ccc-cccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc
Q 010836 232 -GSF-SNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308 (499)
Q Consensus 232 -~~l-~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip 308 (499)
..+ .....++.|||+ +...|..+.+.|.+.+. .+..+||+.++.+|...++.|++ +...+||||+++++|+|+.
T Consensus 604 ~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~ag~-~~~slHGgv~q~dR~sti~dfK~--~~~~LLvaTsvvarGLdv~ 680 (997)
T KOG0334|consen 604 LELLGERYEDGKTIIFVDKQEKADALLRDLQKAGY-NCDSLHGGVDQHDRSSTIEDFKN--GVVNLLVATSVVARGLDVK 680 (997)
T ss_pred HHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhcCc-chhhhcCCCchHHHHhHHHHHhc--cCceEEEehhhhhcccccc
Confidence 111 112477788888 78999999999997776 77779999999999999999999 9999999999999999995
Q ss_pred -ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC
Q 010836 309 -ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 309 -v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~ 358 (499)
+..||+|+. |-....|+||+||+||.|++ |.+++|..+
T Consensus 681 ~l~Lvvnyd~---------pnh~edyvhR~gRTgragrk---g~AvtFi~p 719 (997)
T KOG0334|consen 681 ELILVVNYDF---------PNHYEDYVHRVGRTGRAGRK---GAAVTFITP 719 (997)
T ss_pred cceEEEEccc---------chhHHHHHHHhcccccCCcc---ceeEEEeCh
Confidence 999999999 55788899999999999998 888777665
No 68
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.97 E-value=3.6e-31 Score=272.66 Aligned_cols=307 Identities=21% Similarity=0.305 Sum_probs=239.1
Q ss_pred CCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCee
Q 010836 62 LTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQER 136 (499)
Q Consensus 62 l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l----~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~ 136 (499)
+-..|. ++-++ .++..|+|.|+|.+|||.+|-.++ .+..+++|..|-++|.+|-++.|++.--.++++||+..
T Consensus 298 lD~FQk~Ai~~l--erg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~DvgLlTGDvq 375 (1248)
T KOG0947|consen 298 LDTFQKEAIYHL--ERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFGDVGLLTGDVQ 375 (1248)
T ss_pred ccHHHHHHHHHH--HcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhccccceeeccee
Confidence 555666 88877 679999999999999999963322 23458999999999999999999975566779999977
Q ss_pred cccCCCceEEEceeec--------cccCCccEEEEecCcccCCCCCChhHHHHHhccccccceEeecCCCchHHHHHHHH
Q 010836 137 EEVDGAKHRAVTVEMA--------DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV 208 (499)
Q Consensus 137 ~~~~~~~~iv~T~e~~--------~~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~ 208 (499)
.. +++..+++|+|++ +.+++++.||+||+|-+.|.+||..|...++-+++ .+.++..++++++..+++.|
T Consensus 376 in-PeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~eRGvVWEEViIMlP~-HV~~IlLSATVPN~~EFA~W 453 (1248)
T KOG0947|consen 376 IN-PEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVERGVVWEEVIIMLPR-HVNFILLSATVPNTLEFADW 453 (1248)
T ss_pred eC-CCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecccccccccceeeeeeccc-cceEEEEeccCCChHHHHHH
Confidence 66 4678899999876 45689999999999999999999999999887764 56777778889999999999
Q ss_pred cCCe----EE-EEeeeecCCCCcc-------------------------cccc---------------------------
Q 010836 209 TGDD----VK-VQSYERLSPLVPL-------------------------NVPL--------------------------- 231 (499)
Q Consensus 209 ~~~~----~~-~~~~~~~~~~~~~-------------------------~~~l--------------------------- 231 (499)
.|.. +. +....|+.|++.. ...+
T Consensus 454 IGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~ 533 (1248)
T KOG0947|consen 454 IGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKT 533 (1248)
T ss_pred hhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcC
Confidence 8762 22 2222333333210 0000
Q ss_pred -----------------------ccccccCCC----CEEEEeeHHHHHHHHHHHHHc-----------------------
Q 010836 232 -----------------------GSFSNIQTG----DCIVTFSRHAIYRLKKAIESR----------------------- 261 (499)
Q Consensus 232 -----------------------~~l~~~~~~----~~iv~~s~~~~~~l~~~L~~~----------------------- 261 (499)
..+..+.+. -++|+||++.|++.++.|...
T Consensus 534 ~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk 613 (1248)
T KOG0947|consen 534 NYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLK 613 (1248)
T ss_pred CCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcC
Confidence 000000000 134455999999999988753
Q ss_pred ---------------CCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccccccccEEEEcccccccCcccc
Q 010836 262 ---------------GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELR 326 (499)
Q Consensus 262 ---------------~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidipv~~VI~~~~~~~~~~~~~ 326 (499)
...++++|||++-|-.+.-++-.|.. |-++||+||-+++||+|+|.++||+.++.|+||...+
T Consensus 614 ~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqr--GlVKVLFATETFAMGVNMPARtvVF~Sl~KhDG~efR 691 (1248)
T KOG0947|consen 614 GEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQR--GLVKVLFATETFAMGVNMPARTVVFSSLRKHDGNEFR 691 (1248)
T ss_pred hhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhc--CceEEEeehhhhhhhcCCCceeEEeeehhhccCccee
Confidence 12258999999999999999999999 9999999999999999999999999999999999999
Q ss_pred ccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC---HHHHHhhhCCCCchhh
Q 010836 327 DLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED---LPLLHKSLLEPSPMLE 375 (499)
Q Consensus 327 p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~---~~~~~~~~~~~~~~i~ 375 (499)
.+.+.+|.|++|||||.|-+ ..|+++.+.... ...+++++-.....+.
T Consensus 692 ~L~PGEytQMAGRAGRRGlD-~tGTVii~~~~~vp~~a~l~~li~G~~~~L~ 742 (1248)
T KOG0947|consen 692 ELLPGEYTQMAGRAGRRGLD-ETGTVIIMCKDSVPSAATLKRLIMGGPTRLE 742 (1248)
T ss_pred ecCChhHHhhhccccccccC-cCceEEEEecCCCCCHHHHhhHhcCCCchhh
Confidence 99999999999999999986 778887776544 4667777766655443
No 69
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.9e-30 Score=257.12 Aligned_cols=298 Identities=16% Similarity=0.156 Sum_probs=210.1
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc----C--------CCEEE
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES----S--------SSGIY 106 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~----~--------~~~l~ 106 (499)
..++.+.+.+... +|..++++|. ++|.+ +.+++++.++|||||||+++..+++. . -+++|
T Consensus 142 ~~~~~ll~nl~~~-----~F~~Pt~iq~~aipvf--l~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~I 214 (593)
T KOG0344|consen 142 SMNKRLLENLQEL-----GFDEPTPIQKQAIPVF--LEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALI 214 (593)
T ss_pred hhcHHHHHhHhhC-----CCCCCCcccchhhhhh--hcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEE
Confidence 4567778888888 9999999999 99999 67999999999999999998554432 1 26799
Q ss_pred EccHHHHHHHHHHHHHhcCCc------eeEeeCCeec-------ccCCCceEEEceeec----------cccCCccEEEE
Q 010836 107 CGPLRLLAWEVAKRLNKANVS------CDLITGQERE-------EVDGAKHRAVTVEMA----------DVVSDYDCAVI 163 (499)
Q Consensus 107 l~P~r~La~q~~~~l~~~g~~------~~~~~g~~~~-------~~~~~~~iv~T~e~~----------~~l~~~~~iVi 163 (499)
+.|+|+|+.|++..+.++.+. +......... .....++++.||-.+ .-+..+.++|+
T Consensus 215 l~ptreLa~Qi~re~~k~~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~ 294 (593)
T KOG0344|consen 215 LSPTRELAAQIYREMRKYSIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVV 294 (593)
T ss_pred ecchHHHHHHHHHHHHhcCCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEee
Confidence 999999999999999987432 1111111000 011356788888222 13588999999
Q ss_pred ecCcccCCCCCChh--HHHHHhccccccceEeecCCCc-hHHHHHHHHcCCeEEEEee-eecCCCCcc----------cc
Q 010836 164 DEIQMLGCKTRGFS--FTRALLGICANELHLCGDPAAV-PLIQQILQVTGDDVKVQSY-ERLSPLVPL----------NV 229 (499)
Q Consensus 164 DEah~~~~~~~g~~--~~~~ll~l~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~-~~~~~~~~~----------~~ 229 (499)
||+|++.+. -++. +.+++.......+++-..+++. ..+++++...-.......+ .+....... ..
T Consensus 295 dEaD~lfe~-~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~gse~~ 373 (593)
T KOG0344|consen 295 DEADLLFEP-EFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCGSEKG 373 (593)
T ss_pred chHHhhhCh-hhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeeecchh
Confidence 999999865 1222 3344444555544443333333 4555565543332211111 111110000 00
Q ss_pred cc----ccccccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcc
Q 010836 230 PL----GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMG 304 (499)
Q Consensus 230 ~l----~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~G 304 (499)
.+ ..+...-+...+||. +.+.+.+|...|......++.++||..++.+|.+.+++|+. |++.||+||+++++|
T Consensus 374 K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~--g~IwvLicTdll~RG 451 (593)
T KOG0344|consen 374 KLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI--GKIWVLICTDLLARG 451 (593)
T ss_pred HHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc--cCeeEEEehhhhhcc
Confidence 11 111112234455566 99999999999965555689999999999999999999999 999999999999999
Q ss_pred ccc-cccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 305 LNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 305 idi-pv~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
+|+ .++.||+||+ |-+..+|+||+||+||.|+. |.+++++.++
T Consensus 452 iDf~gvn~VInyD~---------p~s~~syihrIGRtgRag~~---g~Aitfytd~ 495 (593)
T KOG0344|consen 452 IDFKGVNLVINYDF---------PQSDLSYIHRIGRTGRAGRS---GKAITFYTDQ 495 (593)
T ss_pred ccccCcceEEecCC---------CchhHHHHHHhhccCCCCCC---cceEEEeccc
Confidence 999 6999999999 66999999999999999998 9988887764
No 70
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.97 E-value=9.5e-31 Score=259.76 Aligned_cols=295 Identities=15% Similarity=0.148 Sum_probs=217.0
Q ss_pred CcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHH----HHHHHc---CCCEEEEccHHH
Q 010836 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA----LSRLES---SSSGIYCGPLRL 112 (499)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~----l~~l~~---~~~~l~l~P~r~ 112 (499)
+-.++...|+.. +|..+|++|. ++|.+ ..+-|+||.+..|+|||++| ++.+.. +...++++|||+
T Consensus 32 l~r~vl~glrrn-----~f~~ptkiQaaAIP~~--~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTRE 104 (980)
T KOG4284|consen 32 LWREVLLGLRRN-----AFALPTKIQAAAIPAI--FSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTRE 104 (980)
T ss_pred HHHHHHHHHHhh-----cccCCCchhhhhhhhh--hcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchh
Confidence 445677778877 9999999999 99999 45999999999999999995 344432 357799999999
Q ss_pred HHHHHHHHHHhc-----CCceeEeeCCeecc-----cCCCceEEEceeeccc--------cCCccEEEEecCcccCCC-C
Q 010836 113 LAWEVAKRLNKA-----NVSCDLITGQEREE-----VDGAKHRAVTVEMADV--------VSDYDCAVIDEIQMLGCK-T 173 (499)
Q Consensus 113 La~q~~~~l~~~-----g~~~~~~~g~~~~~-----~~~~~~iv~T~e~~~~--------l~~~~~iViDEah~~~~~-~ 173 (499)
+|.|+.+.+.+. |.+|.++.|+.... ...+.++++||..+.. .++++++|+||||.+.+. .
T Consensus 105 iaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~s 184 (980)
T KOG4284|consen 105 IAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTES 184 (980)
T ss_pred hhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhh
Confidence 999999998864 77899988876432 3467899999954432 388999999999999863 1
Q ss_pred CChhHHHHHhccccccceEeecCCCc-hHH-HHHHHHcCCeEEEEe------------eeecCCCC---c-----ccccc
Q 010836 174 RGFSFTRALLGICANELHLCGDPAAV-PLI-QQILQVTGDDVKVQS------------YERLSPLV---P-----LNVPL 231 (499)
Q Consensus 174 ~g~~~~~~ll~l~~~~~~~~~~~~~~-~~~-~~l~~~~~~~~~~~~------------~~~~~~~~---~-----~~~~l 231 (499)
.......++-.+++.. +++..+++. .++ ..+.....+...+.. |....+.. . +...+
T Consensus 185 fq~~In~ii~slP~~r-Qv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L 263 (980)
T KOG4284|consen 185 FQDDINIIINSLPQIR-QVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKL 263 (980)
T ss_pred HHHHHHHHHHhcchhh-eeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheeeeccCCcchHHHHHHHHHHH
Confidence 1222333444555443 333333333 233 333344443332221 11111100 0 11111
Q ss_pred -ccccccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-
Q 010836 232 -GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN- 308 (499)
Q Consensus 232 -~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip- 308 (499)
..++.++-.+.+||+ ....|+.++..|...|. .+.++.|.|++.+|...++.++. -..+|||+||.-+||||-|
T Consensus 264 ~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~-d~~~ISgaM~Q~~Rl~a~~~lr~--f~~rILVsTDLtaRGIDa~~ 340 (980)
T KOG4284|consen 264 THVFKSIPYVQALVFCDQISRAEPIATHLKSSGL-DVTFISGAMSQKDRLLAVDQLRA--FRVRILVSTDLTARGIDADN 340 (980)
T ss_pred HHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCC-CeEEeccccchhHHHHHHHHhhh--ceEEEEEecchhhccCCccc
Confidence 223445666777777 78899999999998887 99999999999999999999999 8999999999999999997
Q ss_pred ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC
Q 010836 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 309 v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~ 358 (499)
+..||+.|. |.+-.+|.||+|||||+|.. |..+++..+
T Consensus 341 vNLVVNiD~---------p~d~eTY~HRIGRAgRFG~~---G~aVT~~~~ 378 (980)
T KOG4284|consen 341 VNLVVNIDA---------PADEETYFHRIGRAGRFGAH---GAAVTLLED 378 (980)
T ss_pred cceEEecCC---------CcchHHHHHHhhhccccccc---ceeEEEecc
Confidence 999999999 88999999999999999987 776666544
No 71
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.97 E-value=5.8e-30 Score=243.38 Aligned_cols=305 Identities=20% Similarity=0.185 Sum_probs=216.0
Q ss_pred HHHHhhhccCCCccccCCCC-Cchhc-cchHHHhcCCceEEEEccCCccHHHHH-HHHHHcCCCEEEEccHHHHHHHHHH
Q 010836 43 VIIRSYCSGSGMKKFDFTDL-TRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA-LSRLESSSSGIYCGPLRLLAWEVAK 119 (499)
Q Consensus 43 ~~l~~~l~~~~~~~~~~~~l-~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~-l~~l~~~~~~l~l~P~r~La~q~~~ 119 (499)
..++++|++. ||+..+ ++.|+ ++..+- ..++||.+++|||+||+++| +..|+.++..||+.|..+|..++.+
T Consensus 5 r~VreaLKK~----FGh~kFKs~LQE~A~~c~V-K~k~DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiD 79 (641)
T KOG0352|consen 5 RKVREALKKL----FGHKKFKSRLQEQAINCIV-KRKCDVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQID 79 (641)
T ss_pred HHHHHHHHHH----hCchhhcChHHHHHHHHHH-hccCcEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHH
Confidence 3567777776 677765 56777 666654 56899999999999999998 7788888888999999999999999
Q ss_pred HHHhcCCceeEeeCCe------------ecccCCCceEEEceeeccc------------cCCccEEEEecCcccCCCCCC
Q 010836 120 RLNKANVSCDLITGQE------------REEVDGAKHRAVTVEMADV------------VSDYDCAVIDEIQMLGCKTRG 175 (499)
Q Consensus 120 ~l~~~g~~~~~~~g~~------------~~~~~~~~~iv~T~e~~~~------------l~~~~~iViDEah~~~~~~~g 175 (499)
.+..+.+++..+.+.. .....+..++++|||+... -..+.++|+||||+++ +||
T Consensus 80 HL~~LKVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVS--QWG 157 (641)
T KOG0352|consen 80 HLKRLKVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVS--QWG 157 (641)
T ss_pred HHHhcCCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHh--hhc
Confidence 9998878776654421 2223467889999988732 1668999999999998 889
Q ss_pred hhHHHHHhcc--c-----cccceEeecCCCchHHHHHHHHcCCeEEEEeeeecC-----------------CCCcc----
Q 010836 176 FSFTRALLGI--C-----ANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLS-----------------PLVPL---- 227 (499)
Q Consensus 176 ~~~~~~ll~l--~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----------------~~~~~---- 227 (499)
+.|..-.+.| . ......+..+++...-+++...+.-.-++..+..+. ++...
T Consensus 158 HDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~ 237 (641)
T KOG0352|consen 158 HDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFS 237 (641)
T ss_pred cccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHH
Confidence 9875332221 1 111222334444444444444322211221111000 00000
Q ss_pred ccccc---ccccc---CCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecch
Q 010836 228 NVPLG---SFSNI---QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 300 (499)
Q Consensus 228 ~~~l~---~l~~~---~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~ 300 (499)
...+. ...+. ..|--||++ |++++++++-.|...|. .+..+|+++...+|.++.+.|-+ ++..||+||..
T Consensus 238 ~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi-~A~AYHAGLK~~ERTeVQe~WM~--~~~PvI~AT~S 314 (641)
T KOG0352|consen 238 SSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGI-PAMAYHAGLKKKERTEVQEKWMN--NEIPVIAATVS 314 (641)
T ss_pred HHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCc-chHHHhcccccchhHHHHHHHhc--CCCCEEEEEec
Confidence 00010 00111 123335555 99999999999999888 99999999999999999999999 99999999999
Q ss_pred hhcccccc-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCH-HHHHhhhCC
Q 010836 301 IGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL-PLLHKSLLE 369 (499)
Q Consensus 301 ~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~-~~~~~~~~~ 369 (499)
++||+|-| |++||+++. +.+.+-|.|..|||||.|.. .+|-.++..+. ..+.-++..
T Consensus 315 FGMGVDKp~VRFViHW~~---------~qn~AgYYQESGRAGRDGk~---SyCRLYYsR~D~~~i~FLi~~ 373 (641)
T KOG0352|consen 315 FGMGVDKPDVRFVIHWSP---------SQNLAGYYQESGRAGRDGKR---SYCRLYYSRQDKNALNFLVSG 373 (641)
T ss_pred cccccCCcceeEEEecCc---------hhhhHHHHHhccccccCCCc---cceeeeecccchHHHHHHHhh
Confidence 99999997 999999999 56999999999999999998 88977776543 333334433
No 72
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=5.1e-29 Score=259.99 Aligned_cols=279 Identities=16% Similarity=0.081 Sum_probs=187.2
Q ss_pred CCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHH----HHcCC-CEEEEccHHHHHHHHHHHHHhcCC----ce
Q 010836 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR----LESSS-SGIYCGPLRLLAWEVAKRLNKANV----SC 128 (499)
Q Consensus 59 ~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~----l~~~~-~~l~l~P~r~La~q~~~~l~~~g~----~~ 128 (499)
...|++.|+ +++.+ +.+++.++++|||+|||.++... +...+ ++++++||++|+.|+.+++.+++. .+
T Consensus 112 ~~~~r~~Q~~av~~~--l~~~~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~~ 189 (501)
T PHA02558 112 KIEPHWYQYDAVYEG--LKNNRRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREAM 189 (501)
T ss_pred cCCCCHHHHHHHHHH--HhcCceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccce
Confidence 357999999 89887 45788999999999999986432 22333 899999999999999999998642 23
Q ss_pred eEeeCCeecccCCCceEEEceeecc-----ccCCccEEEEecCcccCCCCCChhHHHHHhccccccceEeecCCCchH--
Q 010836 129 DLITGQEREEVDGAKHRAVTVEMAD-----VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPL-- 201 (499)
Q Consensus 129 ~~~~g~~~~~~~~~~~iv~T~e~~~-----~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~~~-- 201 (499)
..+.|+.... .+..++|+|++.+. ++.+++++|+||||++... .+...+..+.. ....+|.+++...
T Consensus 190 ~~i~~g~~~~-~~~~I~VaT~qsl~~~~~~~~~~~~~iIvDEaH~~~~~----~~~~il~~~~~-~~~~lGLTATp~~~~ 263 (501)
T PHA02558 190 HKIYSGTAKD-TDAPIVVSTWQSAVKQPKEWFDQFGMVIVDECHLFTGK----SLTSIITKLDN-CKFKFGLTGSLRDGK 263 (501)
T ss_pred eEEecCcccC-CCCCEEEeeHHHHhhchhhhccccCEEEEEchhcccch----hHHHHHHhhhc-cceEEEEeccCCCcc
Confidence 2333332222 35688899986542 4678999999999999743 33444433322 2233444444321
Q ss_pred --HHHHHHHcCCeE-----------------EEEee-eecCCC--------Ccc------------ccccc-cccc--cC
Q 010836 202 --IQQILQVTGDDV-----------------KVQSY-ERLSPL--------VPL------------NVPLG-SFSN--IQ 238 (499)
Q Consensus 202 --~~~l~~~~~~~~-----------------~~~~~-~~~~~~--------~~~------------~~~l~-~l~~--~~ 238 (499)
...+....|... .+... .+..+. .+. ...+. .... ..
T Consensus 264 ~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~ 343 (501)
T PHA02558 264 ANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKK 343 (501)
T ss_pred ccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhc
Confidence 111122222111 00000 000000 000 00000 0001 12
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEec-chhhcccccc-ccEEEEc
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS-DAIGMGLNLN-ISRIIFS 315 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT-~~~~~Gidip-v~~VI~~ 315 (499)
....+|+| +.++++.+++.|++.+. ++..+||+++.++|..+++.|++ ++..||||| +++++|+|+| +++||++
T Consensus 344 ~~~~lV~~~~~~h~~~L~~~L~~~g~-~v~~i~G~~~~~eR~~i~~~~~~--~~~~vLvaT~~~l~eG~Dip~ld~vIl~ 420 (501)
T PHA02558 344 GENTFVMFKYVEHGKPLYEMLKKVYD-KVYYVSGEVDTEDRNEMKKIAEG--GKGIIIVASYGVFSTGISIKNLHHVIFA 420 (501)
T ss_pred CCCEEEEEEEHHHHHHHHHHHHHcCC-CEEEEeCCCCHHHHHHHHHHHhC--CCCeEEEEEcceeccccccccccEEEEe
Confidence 34455555 88899999999999877 99999999999999999999998 888999998 8999999997 9999988
Q ss_pred ccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcC
Q 010836 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (499)
Q Consensus 316 ~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~ 357 (499)
.. +.+...|+||+||++|.+.++....++-+.+
T Consensus 421 ~p---------~~s~~~~~QriGR~~R~~~~K~~~~i~D~vD 453 (501)
T PHA02558 421 HP---------SKSKIIVLQSIGRVLRKHGSKSIATVWDIID 453 (501)
T ss_pred cC---------CcchhhhhhhhhccccCCCCCceEEEEEeec
Confidence 77 4488999999999999987645555665554
No 73
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=3.9e-29 Score=236.28 Aligned_cols=295 Identities=16% Similarity=0.197 Sum_probs=208.1
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHcC-------CCEEEEccHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLESS-------SSGIYCGPLR 111 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~~-------~~~l~l~P~r 111 (499)
.|.+.+...+... ||..|+.+|+ +++.. .++.++++.+++|+|||.++...++.. ..+++++|+|
T Consensus 32 ~L~e~LLrgiy~y-----GFekPSaIQqraI~p~--i~G~dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtr 104 (397)
T KOG0327|consen 32 NLKESLLRGIYAY-----GFEKPSAIQQRAILPC--IKGHDVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTR 104 (397)
T ss_pred CCCHHHHhHHHhh-----ccCCchHHHhcccccc--ccCCceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchH
Confidence 4677777777776 9999999999 66666 669999999999999999975555433 3679999999
Q ss_pred HHHHHHHHHHHhc----CCceeEeeCCeecc------cCC-CceEEEce----eecc----ccCCccEEEEecCcccCCC
Q 010836 112 LLAWEVAKRLNKA----NVSCDLITGQEREE------VDG-AKHRAVTV----EMAD----VVSDYDCAVIDEIQMLGCK 172 (499)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~-~~~iv~T~----e~~~----~l~~~~~iViDEah~~~~~ 172 (499)
+||.|+.+....+ +.++..+.|+.... ... ..+++.|| .+++ ....++++|+||++++..
T Consensus 105 eLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs- 183 (397)
T KOG0327|consen 105 ELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLS- 183 (397)
T ss_pred HHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhc-
Confidence 9999999887765 45666566643322 122 45567777 3332 236799999999999984
Q ss_pred CCChhH-HHHHhccccccceEeecCCCc-hHHHHHHHHcC-CeEEEE-------------eeeecCCCCccccccccccc
Q 010836 173 TRGFSF-TRALLGICANELHLCGDPAAV-PLIQQILQVTG-DDVKVQ-------------SYERLSPLVPLNVPLGSFSN 236 (499)
Q Consensus 173 ~~g~~~-~~~ll~l~~~~~~~~~~~~~~-~~~~~l~~~~~-~~~~~~-------------~~~~~~~~~~~~~~l~~l~~ 236 (499)
+|+.- ...++...+...+++-.+++. +.+..+..... ....+. .|.+..+-. +...+..+.+
T Consensus 184 -~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~ltl~gikq~~i~v~k~~-k~~~l~dl~~ 261 (397)
T KOG0327|consen 184 -RGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDELTLEGIKQFYINVEKEE-KLDTLCDLYR 261 (397)
T ss_pred -cchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchhhhhhheeeeeeeccccc-cccHHHHHHH
Confidence 46652 233444334444444333333 23323322211 111111 011111111 1222223333
Q ss_pred cCCCCEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccccc-cccEEEEc
Q 010836 237 IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFS 315 (499)
Q Consensus 237 ~~~~~~iv~~s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidi-pv~~VI~~ 315 (499)
...+.++||++++.+..+...|...+. .+..+||.+.+.+|..+.+.|+. |..+|||.|+.+++|+|+ .++.||++
T Consensus 262 ~~~q~~if~nt~r~v~~l~~~L~~~~~-~~s~~~~d~~q~~R~~~~~ef~~--gssrvlIttdl~argidv~~~slviny 338 (397)
T KOG0327|consen 262 RVTQAVIFCNTRRKVDNLTDKLRAHGF-TVSAIHGDMEQNERDTLMREFRS--GSSRVLITTDLLARGIDVQQVSLVVNY 338 (397)
T ss_pred hhhcceEEecchhhHHHHHHHHhhCCc-eEEEeecccchhhhhHHHHHhhc--CCceEEeeccccccccchhhcceeeee
Confidence 223344555599999999999977766 99999999999999999999999 999999999999999999 69999999
Q ss_pred ccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 316 ~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
+. |....+|+||+||+||.|.+ |.++.+..++
T Consensus 339 dl---------P~~~~~yihR~gr~gr~grk---g~~in~v~~~ 370 (397)
T KOG0327|consen 339 DL---------PARKENYIHRIGRAGRFGRK---GVAINFVTEE 370 (397)
T ss_pred cc---------ccchhhhhhhcccccccCCC---ceeeeeehHh
Confidence 99 77999999999999999998 8888776653
No 74
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.96 E-value=1.4e-28 Score=261.22 Aligned_cols=268 Identities=16% Similarity=0.131 Sum_probs=174.2
Q ss_pred cCCCCCchhc-cchHHHhcCCc-eEEEEccCCccHHHHHHHHHH---cC---C-CEEEEccHHHHHHHHHHHHHhcC---
Q 010836 58 DFTDLTRPHT-WYPLARKKVRK-VILHVGPTNSGKTHQALSRLE---SS---S-SGIYCGPLRLLAWEVAKRLNKAN--- 125 (499)
Q Consensus 58 ~~~~l~~~q~-~~~~~~~~~~~-~vli~apTGsGKT~~~l~~l~---~~---~-~~l~l~P~r~La~q~~~~l~~~g--- 125 (499)
||+ |+++|+ ++|.+. .++ ++++.+|||||||.++..+++ .+ . +.+|++|||+|+.|+++.+.+++
T Consensus 13 G~~-PtpiQ~~~i~~il--~G~~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l 89 (844)
T TIGR02621 13 GYS-PFPWQLSLAERFV--AGQPPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERL 89 (844)
T ss_pred CCC-CCHHHHHHHHHHH--cCCCcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHh
Confidence 777 999999 999984 566 688889999999986533332 11 2 34567899999999998887542
Q ss_pred ------------------------CceeEeeCCeecc------cCCCceEEEceeecc--------------------cc
Q 010836 126 ------------------------VSCDLITGQEREE------VDGAKHRAVTVEMAD--------------------VV 155 (499)
Q Consensus 126 ------------------------~~~~~~~g~~~~~------~~~~~~iv~T~e~~~--------------------~l 155 (499)
+++..++|+.... .....+||+|++++. .+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L 169 (844)
T TIGR02621 90 PDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFL 169 (844)
T ss_pred cccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhh
Confidence 5566778875432 235567888874431 14
Q ss_pred CCccEEEEecCcccCCCCCChhH-HHHHhcc---ccc--cceEeecCCCch-HHHHHHHHc-CCeE--EEEeee------
Q 010836 156 SDYDCAVIDEIQMLGCKTRGFSF-TRALLGI---CAN--ELHLCGDPAAVP-LIQQILQVT-GDDV--KVQSYE------ 219 (499)
Q Consensus 156 ~~~~~iViDEah~~~~~~~g~~~-~~~ll~l---~~~--~~~~~~~~~~~~-~~~~l~~~~-~~~~--~~~~~~------ 219 (499)
+++.++|+|||| .+. |+.- ...++.. ... ..+++..++|.+ .+.++.... .... .+....
T Consensus 170 ~~v~~LVLDEAD--Ld~--gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ki 245 (844)
T TIGR02621 170 GQDALIVHDEAH--LEP--AFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAKKI 245 (844)
T ss_pred ccceEEEEehhh--hcc--ccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeecccccccccce
Confidence 789999999999 333 5442 2333332 121 134555555543 222222211 1111 111000
Q ss_pred -ecCCCCccc---cccc---cccccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHH-----HHHHHhc
Q 010836 220 -RLSPLVPLN---VPLG---SFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRT-----RQATRFN 286 (499)
Q Consensus 220 -~~~~~~~~~---~~l~---~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~-----~~~~~f~ 286 (499)
...+..... ..+. .+.....+.++||+ |++.++.+++.|++.+. ..+||+|++.+|. .+++.|+
T Consensus 246 ~q~v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~---~lLHG~m~q~dR~~~~~~~il~~Fk 322 (844)
T TIGR02621 246 VKLVPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF---ELLTGTLRGAERDDLVKKEIFNRFL 322 (844)
T ss_pred EEEEecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC---eEeeCCCCHHHHhhHHHHHHHHHHh
Confidence 000000000 0011 11112345677776 99999999999987643 8999999999999 7788897
Q ss_pred C----CC-----CCccEEEecchhhccccccccEEEEcccccccCccccccChhhHHhhhccCCCCCCC
Q 010836 287 D----AS-----SEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (499)
Q Consensus 287 ~----~~-----g~~~iLvaT~~~~~Gidipv~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~ 346 (499)
+ +. +..+|||||+++++||||+.++||++.. +.++|+||+||+||.|..
T Consensus 323 ~~~~~g~~~~~~~g~~ILVATdVaerGLDId~d~VI~d~a-----------P~esyIQRiGRtgR~G~~ 380 (844)
T TIGR02621 323 PQMLSGSRARPQQGTVYLVCTSAGEVGVNISADHLVCDLA-----------PFESMQQRFGRVNRFGEL 380 (844)
T ss_pred ccccccccccccccceEEeccchhhhcccCCcceEEECCC-----------CHHHHHHHhcccCCCCCC
Confidence 5 11 2268999999999999999899998644 468999999999999984
No 75
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.96 E-value=3.6e-29 Score=269.37 Aligned_cols=333 Identities=19% Similarity=0.188 Sum_probs=239.6
Q ss_pred ccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHH-HHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCC
Q 010836 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA-LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQ 134 (499)
Q Consensus 57 ~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~-l~~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~ 134 (499)
||+..+++-|. ++-.. +.|+++++.+|||+||+++| +.+++.++-.|||.|..+|+.++...+.+.+++...+++.
T Consensus 260 Fg~~~FR~~Q~eaI~~~--l~Gkd~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~~I~a~~L~s~ 337 (941)
T KOG0351|consen 260 FGHKGFRPNQLEAINAT--LSGKDCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKKGIPACFLSSI 337 (941)
T ss_pred hccccCChhHHHHHHHH--HcCCceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhcCcceeecccc
Confidence 69999999999 88866 67999999999999999998 6777888889999999999999999998889999988886
Q ss_pred eecc----------cC--CCceEEEceeeccc----------cC---CccEEEEecCcccCCCCCChhHHHHH-------
Q 010836 135 EREE----------VD--GAKHRAVTVEMADV----------VS---DYDCAVIDEIQMLGCKTRGFSFTRAL------- 182 (499)
Q Consensus 135 ~~~~----------~~--~~~~iv~T~e~~~~----------l~---~~~~iViDEah~~~~~~~g~~~~~~l------- 182 (499)
.... .. ...++++|||+... +. .+.++||||||+.+ +||+.|..--
T Consensus 338 q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVS--qWgHdFRp~Yk~l~~l~ 415 (941)
T KOG0351|consen 338 QTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVS--QWGHDFRPSYKRLGLLR 415 (941)
T ss_pred ccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhh--hhcccccHHHHHHHHHH
Confidence 5431 11 35688999987631 23 38999999999998 8898875321
Q ss_pred hccccccceEeecCCCchHHHHHHHHcCCeE---EEEeeeecCC-CCc-----ccccc---cccccc-CCCC-EEEEeeH
Q 010836 183 LGICANELHLCGDPAAVPLIQQILQVTGDDV---KVQSYERLSP-LVP-----LNVPL---GSFSNI-QTGD-CIVTFSR 248 (499)
Q Consensus 183 l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~-~~~-----~~~~l---~~l~~~-~~~~-~iv~~s~ 248 (499)
.......+.-+.++++....++++..++-.- ....+.|..- +++ ..... ..+... .... +|+|.++
T Consensus 416 ~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr 495 (941)
T KOG0351|consen 416 IRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSR 495 (941)
T ss_pred hhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCc
Confidence 1112223333444555567777776655321 1111111110 000 01111 111222 2333 4445599
Q ss_pred HHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccccccCccccc
Q 010836 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRD 327 (499)
Q Consensus 249 ~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p 327 (499)
++|+.++..|++.+. ++..||++|++.+|..+.+.|.. ++++|+|||-+++||||.| |+.||++++ |
T Consensus 496 ~~ce~vs~~L~~~~~-~a~~YHAGl~~~~R~~Vq~~w~~--~~~~VivATVAFGMGIdK~DVR~ViH~~l---------P 563 (941)
T KOG0351|consen 496 KECEQVSAVLRSLGK-SAAFYHAGLPPKERETVQKAWMS--DKIRVIVATVAFGMGIDKPDVRFVIHYSL---------P 563 (941)
T ss_pred chHHHHHHHHHHhch-hhHhhhcCCCHHHHHHHHHHHhc--CCCeEEEEEeeccCCCCCCceeEEEECCC---------c
Confidence 999999999999986 99999999999999999999999 9999999999999999996 999999999 5
Q ss_pred cChhhHHhhhccCCCCCCCCCcEEEEEEcCCC-HHHHHhhhCCCCch--hhhcCCCChHHHHHHHHhcCCCccHHHHHHH
Q 010836 328 LTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED-LPLLHKSLLEPSPM--LESAGLFPNFDLIYMYSRLHPDSSLYGILEH 404 (499)
Q Consensus 328 ~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~--i~~~~l~~~~~~l~~~~~~~~~~~l~~~l~~ 404 (499)
-+.+.|.|-+|||||.|.. ..|+.++..+ ...++.++...... ..+..-.....++..|++...++.-...+..
T Consensus 564 ks~E~YYQE~GRAGRDG~~---s~C~l~y~~~D~~~l~~ll~s~~~~~~~~~~~~~~~l~~~~~yCen~t~crr~~~l~~ 640 (941)
T KOG0351|consen 564 KSFEGYYQEAGRAGRDGLP---SSCVLLYGYADISELRRLLTSGNRLSGVKKFTRLLELVQVVTYCENETDCRRKQILEY 640 (941)
T ss_pred hhHHHHHHhccccCcCCCc---ceeEEecchhHHHHHHHHHHccccccchhhccchhhHHHHHHhhcCccchhHHHHHHh
Confidence 5999999999999999987 8888887654 35566666555111 1111123344555566666556666666666
Q ss_pred HHHh
Q 010836 405 FLEN 408 (499)
Q Consensus 405 ~~~~ 408 (499)
|-+.
T Consensus 641 fge~ 644 (941)
T KOG0351|consen 641 FGEE 644 (941)
T ss_pred cccc
Confidence 5554
No 76
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=6.1e-29 Score=236.35 Aligned_cols=297 Identities=19% Similarity=0.175 Sum_probs=216.0
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----HcC----CCEEEEccH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESS----SSGIYCGPL 110 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l----~~~----~~~l~l~P~ 110 (499)
.|+..+..++.+. ||..+|++|+ .+|.+ +++++++..+-||||||.+++.++ ... -+++++.|+
T Consensus 27 gL~~~v~raI~kk-----g~~~ptpiqRKTipli--Le~~dvv~martgsgktaaf~ipm~e~Lk~~s~~g~Ralilspt 99 (529)
T KOG0337|consen 27 GLDYKVLRAIHKK-----GFNTPTPIQRKTIPLI--LEGRDVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPT 99 (529)
T ss_pred CCCHHHHHHHHHh-----hcCCCCchhcccccce--eeccccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCc
Confidence 5788888888887 9999999999 99999 889999999999999999974433 333 388999999
Q ss_pred HHHHHHHHHHHHhcC----CceeEeeCCeecc------cCCCceEEEceeec--------cccCCccEEEEecCcccCCC
Q 010836 111 RLLAWEVAKRLNKAN----VSCDLITGQEREE------VDGAKHRAVTVEMA--------DVVSDYDCAVIDEIQMLGCK 172 (499)
Q Consensus 111 r~La~q~~~~l~~~g----~~~~~~~g~~~~~------~~~~~~iv~T~e~~--------~~l~~~~~iViDEah~~~~~ 172 (499)
|+||.|..+.++++| .++.+++|+.... ..++++|++||..+ --++.+.+||+||++.+...
T Consensus 100 reLa~qtlkvvkdlgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfem 179 (529)
T KOG0337|consen 100 RELALQTLKVVKDLGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEM 179 (529)
T ss_pred HHHHHHHHHHHHHhccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhh
Confidence 999999999999763 5666666754432 23678888898433 34688999999999999966
Q ss_pred CCChhHHHHHhccccccceEeecCCCchHHHHHHHH-cCCeEEEE--eeeecCC----------CCccccccccc-ccc-
Q 010836 173 TRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV-TGDDVKVQ--SYERLSP----------LVPLNVPLGSF-SNI- 237 (499)
Q Consensus 173 ~~g~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~--~~~~~~~----------~~~~~~~l~~l-~~~- 237 (499)
.|.......+-.++.....+..+.+.....-++... ..++..+. ...+..+ -......+..+ ...
T Consensus 180 gfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~~a~K~aaLl~il~~~~ 259 (529)
T KOG0337|consen 180 GFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVRKAEKEAALLSILGGRI 259 (529)
T ss_pred hhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeeccHHHHHHHHHHHhccc
Confidence 333345666766665553333333222222233322 11111111 0011111 00111112111 111
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEc
Q 010836 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFS 315 (499)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~ 315 (499)
.+.+.++|. ++..++.+...|+..+. .+..+||+|++..|......|+. ++..++|.||++++|+||| .+.||++
T Consensus 260 ~~~~t~vf~~tk~hve~~~~ll~~~g~-~~s~iysslD~~aRk~~~~~F~~--~k~~~lvvTdvaaRG~diplldnviny 336 (529)
T KOG0337|consen 260 KDKQTIVFVATKHHVEYVRGLLRDFGG-EGSDIYSSLDQEARKINGRDFRG--RKTSILVVTDVAARGLDIPLLDNVINY 336 (529)
T ss_pred cccceeEEecccchHHHHHHHHHhcCC-CccccccccChHhhhhccccccC--CccceEEEehhhhccCCCccccccccc
Confidence 233456666 89999999999999888 89999999999999999999999 9999999999999999999 9999999
Q ss_pred ccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC
Q 010836 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 316 ~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~ 358 (499)
+. |.+...|.||+||+.|.|.. |..|.+...
T Consensus 337 d~---------p~~~klFvhRVgr~aragrt---g~aYs~V~~ 367 (529)
T KOG0337|consen 337 DF---------PPDDKLFVHRVGRVARAGRT---GRAYSLVAS 367 (529)
T ss_pred cC---------CCCCceEEEEecchhhcccc---ceEEEEEec
Confidence 99 77889999999999999987 887766433
No 77
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.1e-27 Score=234.17 Aligned_cols=282 Identities=20% Similarity=0.194 Sum_probs=182.9
Q ss_pred cCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----Hc-CCCEEEEccHHHHHHHHHHHHHh-cCCc---
Q 010836 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ES-SSSGIYCGPLRLLAWEVAKRLNK-ANVS--- 127 (499)
Q Consensus 58 ~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l----~~-~~~~l~l~P~r~La~q~~~~l~~-~g~~--- 127 (499)
+.-.++.+|. ....+. .++++++.|||-|||++|..-+ .. .+++|+++||+-|+.|.++.+.+ .|++
T Consensus 12 ~~ie~R~YQ~~i~a~al---~~NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 12 NTIEPRLYQLNIAAKAL---FKNTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred ccccHHHHHHHHHHHHh---hcCeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 4456777777 444442 4589999999999999974333 33 34699999999999999999986 4664
Q ss_pred eeEeeCCeec-----ccCCCceEEEceeecc--------ccCCccEEEEecCcccCCCCCChhHHHHHhccccccceEee
Q 010836 128 CDLITGQERE-----EVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCG 194 (499)
Q Consensus 128 ~~~~~g~~~~-----~~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~~~~~ 194 (499)
+..++|+... .+....++++||+... .+.++.++|+||||+-... ..|.+.....-..++..+++|
T Consensus 89 i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGn-yAYv~Va~~y~~~~k~~~ilg 167 (542)
T COG1111 89 IAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGN-YAYVFVAKEYLRSAKNPLILG 167 (542)
T ss_pred eeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCc-chHHHHHHHHHHhccCceEEE
Confidence 4577886543 3457899999996652 1378999999999997631 222222211112233333333
Q ss_pred cCCCc----hHHHHHHHHcCCe-EEEE--------ee-------------------------------------------
Q 010836 195 DPAAV----PLIQQILQVTGDD-VKVQ--------SY------------------------------------------- 218 (499)
Q Consensus 195 ~~~~~----~~~~~l~~~~~~~-~~~~--------~~------------------------------------------- 218 (499)
.+++. .-+..++..+|-. +.+. .|
T Consensus 168 LTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~L~~~g~~~~ 247 (542)
T COG1111 168 LTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKPLKELGVIES 247 (542)
T ss_pred EecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcCceec
Confidence 33211 1222222221110 0000 00
Q ss_pred -------------------------------------------------------------------e------------
Q 010836 219 -------------------------------------------------------------------E------------ 219 (499)
Q Consensus 219 -------------------------------------------------------------------~------------ 219 (499)
.
T Consensus 248 ~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d 327 (542)
T COG1111 248 SSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGSKAAKSLLAD 327 (542)
T ss_pred cCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccchHHHHHHhcC
Confidence 0
Q ss_pred -----------ecCCCCccccccc--------cccccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEE-EEc--------
Q 010836 220 -----------RLSPLVPLNVPLG--------SFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCS-IVY-------- 270 (499)
Q Consensus 220 -----------~~~~~~~~~~~l~--------~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~-~~h-------- 270 (499)
...........+. .+.+.....+|||. .++.++.+.+.|.+.+. .+. .+-
T Consensus 328 ~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~-~~~~rFiGQa~r~~~ 406 (542)
T COG1111 328 PYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGI-KARVRFIGQASREGD 406 (542)
T ss_pred hhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCC-cceeEEeeccccccc
Confidence 0000000001110 11111233445554 69999999999998877 432 333
Q ss_pred CCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCc
Q 010836 271 GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPV 349 (499)
Q Consensus 271 g~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~ 349 (499)
.||++.++.++++.|++ |+.+|||||++++.|+||| +|.||+|+. -.|..-++||.||+||...
T Consensus 407 ~GMsQkeQ~eiI~~Fr~--Ge~nVLVaTSVgEEGLDIp~vDlVifYEp---------vpSeIR~IQR~GRTGR~r~---- 471 (542)
T COG1111 407 KGMSQKEQKEIIDQFRK--GEYNVLVATSVGEEGLDIPEVDLVIFYEP---------VPSEIRSIQRKGRTGRKRK---- 471 (542)
T ss_pred cccCHHHHHHHHHHHhc--CCceEEEEcccccccCCCCcccEEEEecC---------CcHHHHHHHhhCccccCCC----
Confidence 47999999999999999 9999999999999999998 999999987 3478899999999999865
Q ss_pred EEEEEEcCCC
Q 010836 350 GEVTCLDSED 359 (499)
Q Consensus 350 g~~~~~~~~~ 359 (499)
|.++.+..++
T Consensus 472 Grv~vLvt~g 481 (542)
T COG1111 472 GRVVVLVTEG 481 (542)
T ss_pred CeEEEEEecC
Confidence 7776665544
No 78
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.95 E-value=8.4e-28 Score=225.57 Aligned_cols=316 Identities=18% Similarity=0.198 Sum_probs=225.8
Q ss_pred cccCchhhhccCCCCCCccchhccCccCCCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccH
Q 010836 12 SALGIPRILRDNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGK 90 (499)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGK 90 (499)
|+.|.+.-.+..+.+|...+.. ++.+..+.+++. |.+..+++.|. ++... +.+++++++.|||.||
T Consensus 56 sdag~~~eyd~spaawdkd~fp-------ws~e~~~ilk~~----f~lekfrplq~~ain~~--ma~ed~~lil~tgggk 122 (695)
T KOG0353|consen 56 SDAGASNEYDRSPAAWDKDDFP-------WSDEAKDILKEQ----FHLEKFRPLQLAAINAT--MAGEDAFLILPTGGGK 122 (695)
T ss_pred ccccccccccCCccccccCCCC-------CchHHHHHHHHH----hhHHhcChhHHHHhhhh--hccCceEEEEeCCCcc
Confidence 3344444333444556554432 556667777765 68899999999 88887 7799999999999999
Q ss_pred HHHH-HHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecc------------cCCCceEEEceeeccc---
Q 010836 91 THQA-LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE------------VDGAKHRAVTVEMADV--- 154 (499)
Q Consensus 91 T~~~-l~~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~------------~~~~~~iv~T~e~~~~--- 154 (499)
+++| +.+|..++-+++++|..+|++++.-.++++|+....+....... ...-..+++|||.+.-
T Consensus 123 slcyqlpal~adg~alvi~plislmedqil~lkqlgi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~ 202 (695)
T KOG0353|consen 123 SLCYQLPALCADGFALVICPLISLMEDQILQLKQLGIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKK 202 (695)
T ss_pred chhhhhhHHhcCCceEeechhHHHHHHHHHHHHHhCcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHH
Confidence 9998 78888999999999999999999999999999887765432221 1245788999976631
Q ss_pred ----------cCCccEEEEecCcccCCCCCChhHHH--HHhccccc---cceEeecCC--C---chHHHHHHHHcCCeEE
Q 010836 155 ----------VSDYDCAVIDEIQMLGCKTRGFSFTR--ALLGICAN---ELHLCGDPA--A---VPLIQQILQVTGDDVK 214 (499)
Q Consensus 155 ----------l~~~~~iViDEah~~~~~~~g~~~~~--~ll~l~~~---~~~~~~~~~--~---~~~~~~l~~~~~~~~~ 214 (499)
...+.++-|||+|+.+ +||+.|.. ..+++.++ ...++|.++ + ++..++++.....-..
T Consensus 203 ~mnkleka~~~~~~~~iaidevhccs--qwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf 280 (695)
T KOG0353|consen 203 FMNKLEKALEAGFFKLIAIDEVHCCS--QWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTF 280 (695)
T ss_pred HHHHHHHHhhcceeEEEeecceeehh--hhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhhee
Confidence 2678999999999998 88988641 12222221 223334332 2 2233333322111011
Q ss_pred EEeeee--------cCCC--Cc-ccccccccccc--CCCCEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHH
Q 010836 215 VQSYER--------LSPL--VP-LNVPLGSFSNI--QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQ 281 (499)
Q Consensus 215 ~~~~~~--------~~~~--~~-~~~~l~~l~~~--~~~~~iv~~s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~ 281 (499)
...+.| ..|- +. .++....+... ....+|+|||++++++++..|+.++. .+..+|+.|.|++|...
T Consensus 281 ~a~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi-~a~~yha~lep~dks~~ 359 (695)
T KOG0353|consen 281 RAGFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGI-HAGAYHANLEPEDKSGA 359 (695)
T ss_pred ecccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCc-cccccccccCccccccc
Confidence 111111 1111 11 11111223222 24457888899999999999999988 89999999999999999
Q ss_pred HHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHh-------------------------
Q 010836 282 ATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQ------------------------- 335 (499)
Q Consensus 282 ~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Q------------------------- 335 (499)
-+.|.. |++.|+|||-+++||||-| |++||+..+ |-|..+|.|
T Consensus 360 hq~w~a--~eiqvivatvafgmgidkpdvrfvihhsl---------~ksienyyqasarillrmtkqknksdtggstqin 428 (695)
T KOG0353|consen 360 HQGWIA--GEIQVIVATVAFGMGIDKPDVRFVIHHSL---------PKSIENYYQASARILLRMTKQKNKSDTGGSTQIN 428 (695)
T ss_pred cccccc--cceEEEEEEeeecccCCCCCeeEEEeccc---------chhHHHHHHHHHHHHHHHhhhcccccCCCcceee
Confidence 999999 9999999999999999997 999999999 449999999
Q ss_pred ------------------hhccCCCCCCCCCcEEEEEEcC
Q 010836 336 ------------------IAGRAGRYGSKFPVGEVTCLDS 357 (499)
Q Consensus 336 ------------------r~GRagR~g~~~~~g~~~~~~~ 357 (499)
..|||||.+.+ ..|+.++.
T Consensus 429 ilevctnfkiffavfsekesgragrd~~~---a~cilyy~ 465 (695)
T KOG0353|consen 429 ILEVCTNFKIFFAVFSEKESGRAGRDDMK---ADCILYYG 465 (695)
T ss_pred hhhhhccceeeeeeecchhccccccCCCc---ccEEEEec
Confidence 78999999987 78877764
No 79
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.95 E-value=2e-26 Score=230.26 Aligned_cols=256 Identities=16% Similarity=0.177 Sum_probs=160.2
Q ss_pred hc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-CCCEEEEccHHHHHHHHHHHHHhc--------CCceeEeeCCe
Q 010836 66 HT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKA--------NVSCDLITGQE 135 (499)
Q Consensus 66 q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~-~~~~l~l~P~r~La~q~~~~l~~~--------g~~~~~~~g~~ 135 (499)
|. +++.+...+..++++++|||||||.+++.+++. ..+++|++|+++|+.|+++++.++ +..+..++|..
T Consensus 2 Q~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~ 81 (357)
T TIGR03158 2 QVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSKAT 81 (357)
T ss_pred HHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecCCc
Confidence 45 777775544456899999999999998766544 458899999999999999998753 34455566641
Q ss_pred ecc-------------------------cCCCce-EEEceeeccc----------------cCCccEEEEecCcccCCCC
Q 010836 136 REE-------------------------VDGAKH-RAVTVEMADV----------------VSDYDCAVIDEIQMLGCKT 173 (499)
Q Consensus 136 ~~~-------------------------~~~~~~-iv~T~e~~~~----------------l~~~~~iViDEah~~~~~~ 173 (499)
... ....+. ++++|++++. +..++++|+||+|.+....
T Consensus 82 ~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~H~~~~~~ 161 (357)
T TIGR03158 82 LKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEFHLYDAKQ 161 (357)
T ss_pred hHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecccccCccc
Confidence 110 012344 4555666642 3688999999999987431
Q ss_pred CCh-h---HHHHHhccccccceEeecCCCch-H-HHHHHHH--cCCeEEEE-ee--------------------------
Q 010836 174 RGF-S---FTRALLGICANELHLCGDPAAVP-L-IQQILQV--TGDDVKVQ-SY-------------------------- 218 (499)
Q Consensus 174 ~g~-~---~~~~ll~l~~~~~~~~~~~~~~~-~-~~~l~~~--~~~~~~~~-~~-------------------------- 218 (499)
... . ....++.......+++..+++.+ . ...+... .+..+.+. ..
T Consensus 162 ~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~i 241 (357)
T TIGR03158 162 LVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFRPVLPPV 241 (357)
T ss_pred chhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhccccccccceeccce
Confidence 111 1 11111121122245566555553 2 2333222 22222110 00
Q ss_pred ---eecCCCCcccccc----ccc----cccCCCCEEEEe-eHHHHHHHHHHHHHcC-CCeEEEEcCCCCHHHHHHHHHHh
Q 010836 219 ---ERLSPLVPLNVPL----GSF----SNIQTGDCIVTF-SRHAIYRLKKAIESRG-KHLCSIVYGSLPPETRTRQATRF 285 (499)
Q Consensus 219 ---~~~~~~~~~~~~l----~~l----~~~~~~~~iv~~-s~~~~~~l~~~L~~~~-~~~v~~~hg~l~~~~R~~~~~~f 285 (499)
... ........+ ..+ .....++++||+ |++.++++++.|++.+ ...+..+||.+++.+|.+.
T Consensus 242 ~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~~~~~~R~~~---- 316 (357)
T TIGR03158 242 ELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGFAPKKDRERA---- 316 (357)
T ss_pred EEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecCCCHHHHHHh----
Confidence 000 000111101 111 112345677777 9999999999998764 2478899999999887542
Q ss_pred cCCCCCccEEEecchhhccccccccEEEEcccccccCccccccChhhHHhhhccCC
Q 010836 286 NDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAG 341 (499)
Q Consensus 286 ~~~~g~~~iLvaT~~~~~Gidipv~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRag 341 (499)
++.+|||||+++++|||+|.+.||+. |.+.++|+||+||+|
T Consensus 317 ----~~~~iLVaTdv~~rGiDi~~~~vi~~-----------p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 317 ----MQFDILLGTSTVDVGVDFKRDWLIFS-----------ARDAAAFWQRLGRLG 357 (357)
T ss_pred ----ccCCEEEEecHHhcccCCCCceEEEC-----------CCCHHHHhhhcccCC
Confidence 46789999999999999986677742 448899999999997
No 80
>PRK14701 reverse gyrase; Provisional
Probab=99.94 E-value=3.4e-26 Score=260.50 Aligned_cols=277 Identities=15% Similarity=0.103 Sum_probs=175.3
Q ss_pred ccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHH-HHH---HcCCCEEEEccHHHHHHHHHHHHHhc------C
Q 010836 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL-SRL---ESSSSGIYCGPLRLLAWEVAKRLNKA------N 125 (499)
Q Consensus 57 ~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l-~~l---~~~~~~l~l~P~r~La~q~~~~l~~~------g 125 (499)
+|| .|+++|+ ++|.+ +++++++++||||||||+.++ ..+ .++.+++|++||++|+.|+++.++.+ +
T Consensus 76 ~G~-~pt~iQ~~~i~~i--l~G~d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~ 152 (1638)
T PRK14701 76 TGF-EFWSIQKTWAKRI--LRGKSFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLD 152 (1638)
T ss_pred hCC-CCCHHHHHHHHHH--HcCCCEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCc
Confidence 488 6999999 99998 669999999999999999642 222 24558999999999999999999864 3
Q ss_pred CceeEeeCCeecc----------cCCCceEEEceeeccc------cCCccEEEEecCcccCCCCC---------ChhH--
Q 010836 126 VSCDLITGQEREE----------VDGAKHRAVTVEMADV------VSDYDCAVIDEIQMLGCKTR---------GFSF-- 178 (499)
Q Consensus 126 ~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~~------l~~~~~iViDEah~~~~~~~---------g~~~-- 178 (499)
+.+..++|+.... ..+.+++++||+.+.. ..+++++||||||+++.... |+.-
T Consensus 153 v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~ 232 (1638)
T PRK14701 153 VRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEI 232 (1638)
T ss_pred eeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccccccccchhhhcCCChHHH
Confidence 4556677754321 1246899999975531 15689999999999984211 3321
Q ss_pred HH-H--Hh-----------------------ccccccceEeecCCCch---HHHHHHHHcCCeEEEEe----------ee
Q 010836 179 TR-A--LL-----------------------GICANELHLCGDPAAVP---LIQQILQVTGDDVKVQS----------YE 219 (499)
Q Consensus 179 ~~-~--ll-----------------------~l~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~~----------~~ 219 (499)
.. + ++ .+......++..+++.+ ....++...- .+.+.. .+
T Consensus 233 ~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~~~l-~f~v~~~~~~lr~i~~~y 311 (1638)
T PRK14701 233 IEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYRELL-GFEVGSGRSALRNIVDVY 311 (1638)
T ss_pred HHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhhcCe-EEEecCCCCCCCCcEEEE
Confidence 11 0 11 11122222333333332 2323332110 111100 00
Q ss_pred ecCCCCccccccccccccCCCCEEEEe-eHHH---HHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEE
Q 010836 220 RLSPLVPLNVPLGSFSNIQTGDCIVTF-SRHA---IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295 (499)
Q Consensus 220 ~~~~~~~~~~~l~~l~~~~~~~~iv~~-s~~~---~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iL 295 (499)
....-......+..+..... ..|||+ |++. ++++++.|.+.+. ++..+||+ |...++.|++ |+.+||
T Consensus 312 i~~~~~~k~~L~~ll~~~g~-~gIVF~~t~~~~e~ae~la~~L~~~Gi-~a~~~h~~-----R~~~l~~F~~--G~~~VL 382 (1638)
T PRK14701 312 LNPEKIIKEHVRELLKKLGK-GGLIFVPIDEGAEKAEEIEKYLLEDGF-KIELVSAK-----NKKGFDLFEE--GEIDYL 382 (1638)
T ss_pred EECCHHHHHHHHHHHHhCCC-CeEEEEeccccchHHHHHHHHHHHCCC-eEEEecch-----HHHHHHHHHc--CCCCEE
Confidence 00000000111122333333 445555 6554 6899999999876 99999995 8899999999 999999
Q ss_pred Eec----chhhcccccc--ccEEEEcccccccCc--cccc-----cChhhHHhhhccCCCCCCC
Q 010836 296 VAS----DAIGMGLNLN--ISRIIFSTMKKFDGV--ELRD-----LTVPEVKQIAGRAGRYGSK 346 (499)
Q Consensus 296 vaT----~~~~~Gidip--v~~VI~~~~~~~~~~--~~~p-----~s~~~~~Qr~GRagR~g~~ 346 (499)
||| ++++||||+| |++|||+++++|.-. ...+ .......++.||+||.|..
T Consensus 383 VaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~ 446 (1638)
T PRK14701 383 IGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIP 446 (1638)
T ss_pred EEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCc
Confidence 999 5899999997 999999999884311 0000 0122344556999999975
No 81
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.94 E-value=6.8e-26 Score=245.84 Aligned_cols=284 Identities=22% Similarity=0.278 Sum_probs=203.2
Q ss_pred HHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc----C--CCEEEEccHHHHHHH
Q 010836 44 IIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES----S--SSGIYCGPLRLLAWE 116 (499)
Q Consensus 44 ~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~----~--~~~l~l~P~r~La~q 116 (499)
.+...+... |...+...|. ++..++ ++++++|+.|||||||.+|+.++++ + .++||+.||++||++
T Consensus 58 ~l~~~l~~~-----g~~~lY~HQ~~A~~~~~--~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~D 130 (851)
T COG1205 58 SLKSALVKA-----GIERLYSHQVDALRLIR--EGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALAND 130 (851)
T ss_pred HHHHHHHHh-----ccccccHHHHHHHHHHH--CCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhh
Confidence 345566555 7888999999 999885 4899999999999999999777653 3 366999999999999
Q ss_pred HHHHHHhc----C--CceeEeeCCeecc------cCCCceEEEceeeccc------------cCCccEEEEecCcccCCC
Q 010836 117 VAKRLNKA----N--VSCDLITGQEREE------VDGAKHRAVTVEMADV------------VSDYDCAVIDEIQMLGCK 172 (499)
Q Consensus 117 ~~~~l~~~----g--~~~~~~~g~~~~~------~~~~~~iv~T~e~~~~------------l~~~~~iViDEah~~~~~ 172 (499)
+.++++++ + +.+...+|+.... ...+++++++|+|++. ++++++||+||+|-+..
T Consensus 131 Q~~rl~~~~~~~~~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG- 209 (851)
T COG1205 131 QAERLRELISDLPGKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG- 209 (851)
T ss_pred HHHHHHHHHHhCCCcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc-
Confidence 99999864 4 6777888875432 3356677888888864 27799999999999753
Q ss_pred CCChhHH---HHH---hccccccceEeecCCCchHHHHHHHHc-CCeEEE-Eee----------eecCCCCc------cc
Q 010836 173 TRGFSFT---RAL---LGICANELHLCGDPAAVPLIQQILQVT-GDDVKV-QSY----------ERLSPLVP------LN 228 (499)
Q Consensus 173 ~~g~~~~---~~l---l~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~-~~~----------~~~~~~~~------~~ 228 (499)
-+|.... +.| +.......+++..++++.....++... +..+.. ... ....|... ..
T Consensus 210 v~GS~vA~llRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~ 289 (851)
T COG1205 210 VQGSEVALLLRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRR 289 (851)
T ss_pred cchhHHHHHHHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhhhhccc
Confidence 3344432 222 222334677788888887776666543 322222 110 11111000 00
Q ss_pred ccc---ccccc--c-CCCCEEEEe-eHHHHHHHH----HHHHHcC---CCeEEEEcCCCCHHHHHHHHHHhcCCCCCccE
Q 010836 229 VPL---GSFSN--I-QTGDCIVTF-SRHAIYRLK----KAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDV 294 (499)
Q Consensus 229 ~~l---~~l~~--~-~~~~~iv~~-s~~~~~~l~----~~L~~~~---~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~i 294 (499)
... ..+.. . ..-+.++|+ +++.++.+. +.+...+ ...+..++|++.+++|.+++..|++ |+..+
T Consensus 290 s~~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~--g~~~~ 367 (851)
T COG1205 290 SALAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKE--GELLG 367 (851)
T ss_pred chHHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhc--CCccE
Confidence 000 11110 1 233456666 899999886 3343333 1268999999999999999999999 99999
Q ss_pred EEecchhhccccc-cccEEEEcccccccCcccccc-ChhhHHhhhccCCCCCCC
Q 010836 295 LVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDL-TVPEVKQIAGRAGRYGSK 346 (499)
Q Consensus 295 LvaT~~~~~Gidi-pv~~VI~~~~~~~~~~~~~p~-s~~~~~Qr~GRagR~g~~ 346 (499)
+++|++++-|+|| .++.||.++. |. +..+++||+|||||.+..
T Consensus 368 ~~st~AlelgidiG~ldavi~~g~---------P~~s~~~~~Q~~GRaGR~~~~ 412 (851)
T COG1205 368 VIATNALELGIDIGSLDAVIAYGY---------PGVSVLSFRQRAGRAGRRGQE 412 (851)
T ss_pred EecchhhhhceeehhhhhHhhcCC---------CCchHHHHHHhhhhccCCCCC
Confidence 9999999999999 5999999988 76 899999999999999964
No 82
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.94 E-value=2.2e-25 Score=234.61 Aligned_cols=279 Identities=15% Similarity=0.118 Sum_probs=179.6
Q ss_pred CCCCchhc-cchHHHhcC-CceEEEEccCCccHHHHHHHHHHc-CCCEEEEccHHHHHHHHHHHHHhc-C---CceeEee
Q 010836 60 TDLTRPHT-WYPLARKKV-RKVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKA-N---VSCDLIT 132 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~-~~~vli~apTGsGKT~~~l~~l~~-~~~~l~l~P~r~La~q~~~~l~~~-g---~~~~~~~ 132 (499)
..+++.|+ ++..+.... .+..++++|||+|||++++..+.. .+++||++|+..|+.|+.+.+.++ + ..+..++
T Consensus 254 ~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~Lv~QW~~ef~~~~~l~~~~I~~~t 333 (732)
T TIGR00603 254 TQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVSVEQWKQQFKMWSTIDDSQICRFT 333 (732)
T ss_pred CCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 55899999 877764322 257899999999999998765543 468999999999999999999875 2 3456667
Q ss_pred CCeeccc-CCCceEEEceeecc--------------cc--CCccEEEEecCcccCCCCCChhHHHHHhccccccceEeec
Q 010836 133 GQEREEV-DGAKHRAVTVEMAD--------------VV--SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGD 195 (499)
Q Consensus 133 g~~~~~~-~~~~~iv~T~e~~~--------------~l--~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~~~~~~ 195 (499)
|+..... ...+++|+|+.++. .+ ..++++|+||||++.. ..+...+..+.+. ..+|.
T Consensus 334 g~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA----~~fr~il~~l~a~--~RLGL 407 (732)
T TIGR00603 334 SDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPA----AMFRRVLTIVQAH--CKLGL 407 (732)
T ss_pred cCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccH----HHHHHHHHhcCcC--cEEEE
Confidence 7654332 24678889886652 12 4689999999999863 2333333222221 11222
Q ss_pred CCCc----hHHHHHHHHcCCeE---------------EEEeeeecCCCCc------------------c--c---ccccc
Q 010836 196 PAAV----PLIQQILQVTGDDV---------------KVQSYERLSPLVP------------------L--N---VPLGS 233 (499)
Q Consensus 196 ~~~~----~~~~~l~~~~~~~~---------------~~~~~~~~~~~~~------------------~--~---~~l~~ 233 (499)
+++. .....+....|... .+.......++.. . . ..+..
T Consensus 408 TATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl~~~~~~k~~l~~~np~K~~~~~~ 487 (732)
T TIGR00603 408 TATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYLRENSRKRMLLYVMNPNKFRACQF 487 (732)
T ss_pred eecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHHHhcchhhhHHhhhChHHHHHHHH
Confidence 2221 01111111122111 0000000011100 0 0 00011
Q ss_pred c-cc--cCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-
Q 010836 234 F-SN--IQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN- 308 (499)
Q Consensus 234 l-~~--~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip- 308 (499)
+ .. ....++|||+ +...++.+++.| .+..+||++++.+|..+++.|++ .+.+++||+|+++++|||+|
T Consensus 488 Li~~he~~g~kiLVF~~~~~~l~~~a~~L------~~~~I~G~ts~~ER~~il~~Fr~-~~~i~vLv~SkVgdeGIDlP~ 560 (732)
T TIGR00603 488 LIRFHEQRGDKIIVFSDNVFALKEYAIKL------GKPFIYGPTSQQERMQILQNFQH-NPKVNTIFLSKVGDTSIDLPE 560 (732)
T ss_pred HHHHHhhcCCeEEEEeCCHHHHHHHHHHc------CCceEECCCCHHHHHHHHHHHHh-CCCccEEEEecccccccCCCC
Confidence 1 11 1334566666 678888888877 35678999999999999999986 13779999999999999998
Q ss_pred ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCC----cEEEEEEcCCC
Q 010836 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFP----VGEVTCLDSED 359 (499)
Q Consensus 309 v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~----~g~~~~~~~~~ 359 (499)
+++||+++.+ .-|..+|+||+||++|.++++. ...+|.+.+.+
T Consensus 561 a~vvI~~s~~--------~gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~d 607 (732)
T TIGR00603 561 ANVLIQISSH--------YGSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKD 607 (732)
T ss_pred CCEEEEeCCC--------CCCHHHHHHHhcccccCCCCCccccccceEEEEecCC
Confidence 9999998762 1389999999999999987622 24556666554
No 83
>PRK09401 reverse gyrase; Reviewed
Probab=99.94 E-value=7.3e-26 Score=252.76 Aligned_cols=268 Identities=17% Similarity=0.186 Sum_probs=172.9
Q ss_pred ccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHH---H-HcCCCEEEEccHHHHHHHHHHHHHhc----CCc
Q 010836 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR---L-ESSSSGIYCGPLRLLAWEVAKRLNKA----NVS 127 (499)
Q Consensus 57 ~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~---l-~~~~~~l~l~P~r~La~q~~~~l~~~----g~~ 127 (499)
+|+ .|+++|. |+|.+ +.+++++++||||||||..++.. + .++.+++|++|||+|+.|++++++++ ++.
T Consensus 77 ~G~-~pt~iQ~~~i~~i--l~g~dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~ 153 (1176)
T PRK09401 77 TGS-KPWSLQRTWAKRL--LLGESFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCG 153 (1176)
T ss_pred cCC-CCcHHHHHHHHHH--HCCCcEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCce
Confidence 466 8999999 99988 67999999999999999764322 2 23568999999999999999999875 445
Q ss_pred eeEeeCCee------c------ccCCCceEEEceeecc----c--cCCccEEEEecCcccCCCCC---------Chh---
Q 010836 128 CDLITGQER------E------EVDGAKHRAVTVEMAD----V--VSDYDCAVIDEIQMLGCKTR---------GFS--- 177 (499)
Q Consensus 128 ~~~~~g~~~------~------~~~~~~~iv~T~e~~~----~--l~~~~~iViDEah~~~~~~~---------g~~--- 177 (499)
+..+.|+.. . ...+.+++|+||+.+. . ..+++++||||||++.+..+ |+.
T Consensus 154 ~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~ 233 (1176)
T PRK09401 154 VKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEED 233 (1176)
T ss_pred EEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHH
Confidence 555554421 1 1134788999995542 2 24599999999999986432 332
Q ss_pred HHHHHhcccc------------------------ccceEeecCCCch-HHHH-HHHHcCCeEEE----------Eeeeec
Q 010836 178 FTRALLGICA------------------------NELHLCGDPAAVP-LIQQ-ILQVTGDDVKV----------QSYERL 221 (499)
Q Consensus 178 ~~~~ll~l~~------------------------~~~~~~~~~~~~~-~~~~-l~~~~~~~~~~----------~~~~~~ 221 (499)
...++-.+.. ....++.+++..+ .... ++...- .+.+ ......
T Consensus 234 i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll-~~~v~~~~~~~rnI~~~yi~ 312 (1176)
T PRK09401 234 IEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELL-GFEVGSPVFYLRNIVDSYIV 312 (1176)
T ss_pred HHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccc-eEEecCcccccCCceEEEEE
Confidence 1111111111 2223333333322 1221 221110 0111 111000
Q ss_pred CCCCcccccc-ccccccCCCCEEEEe-eHHH---HHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEE
Q 010836 222 SPLVPLNVPL-GSFSNIQTGDCIVTF-SRHA---IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLV 296 (499)
Q Consensus 222 ~~~~~~~~~l-~~l~~~~~~~~iv~~-s~~~---~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLv 296 (499)
.+ .....+ ..+.... ...+||+ +++. ++++++.|++.+. ++..+||++ . +.++.|++ |+.+|||
T Consensus 313 ~~--~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi-~v~~~hg~l---~--~~l~~F~~--G~~~VLV 381 (1176)
T PRK09401 313 DE--DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGI-NAELAISGF---E--RKFEKFEE--GEVDVLV 381 (1176)
T ss_pred cc--cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCC-cEEEEeCcH---H--HHHHHHHC--CCCCEEE
Confidence 00 111112 2223333 3456665 6555 9999999999877 999999999 1 34599999 9999999
Q ss_pred e----cchhhcccccc--ccEEEEcccccccCccccccChhhHHhhhccCCC
Q 010836 297 A----SDAIGMGLNLN--ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGR 342 (499)
Q Consensus 297 a----T~~~~~Gidip--v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR 342 (499)
| ||+++||||+| |++|||+++++|- ..-.....+.||.||+-.
T Consensus 382 atas~tdv~aRGIDiP~~IryVI~y~vP~~~---~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 382 GVASYYGVLVRGIDLPERIRYAIFYGVPKFK---FSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred EecCCCCceeecCCCCcceeEEEEeCCCCEE---EeccccccCHHHHHHHHh
Confidence 9 69999999997 8999999997632 111245678999999853
No 84
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.93 E-value=1e-24 Score=233.98 Aligned_cols=341 Identities=15% Similarity=0.153 Sum_probs=202.9
Q ss_pred CCCCchhc-cchHHHhc-CCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHh-cCCceeEee
Q 010836 60 TDLTRPHT-WYPLARKK-VRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNK-ANVSCDLIT 132 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~-~~~~vli~apTGsGKT~~~l~~l----~~~~~~l~l~P~r~La~q~~~~l~~-~g~~~~~~~ 132 (499)
..+++.|+ ++..+... .++++++.|+||||||.+++..+ ..+++++|++|+++|+.|+++++++ +|..+..++
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~ 222 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGAPVAVLH 222 (679)
T ss_pred CCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEE
Confidence 35899999 88887542 35789999999999999986544 4467899999999999999999986 688888888
Q ss_pred CCeecc----------cCCCceEEEcee-eccccCCccEEEEecCcccCCCCC-ChhH--HH-HHhccccccceEeecCC
Q 010836 133 GQEREE----------VDGAKHRAVTVE-MADVVSDYDCAVIDEIQMLGCKTR-GFSF--TR-ALLGICANELHLCGDPA 197 (499)
Q Consensus 133 g~~~~~----------~~~~~~iv~T~e-~~~~l~~~~~iViDEah~~~~~~~-g~~~--~~-~ll~l~~~~~~~~~~~~ 197 (499)
|+.... ....+++++|+. .+..+.+++++||||+|..+..+. +..+ .+ +..........++..++
T Consensus 223 s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ra~~~~~~~il~SA 302 (679)
T PRK05580 223 SGLSDGERLDEWRKAKRGEAKVVIGARSALFLPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVVRAKLENIPVVLGSA 302 (679)
T ss_pred CCCCHHHHHHHHHHHHcCCCCEEEeccHHhcccccCCCEEEEECCCccccccCcCCCCcHHHHHHHHhhccCCCEEEEcC
Confidence 864321 124578888873 334578999999999998764321 2211 11 11111122333333343
Q ss_pred CchHHHHHHHHcCCeEEEEee-eec----CC------C---------C-ccccccccccc-cCCC-CEEEEe--------
Q 010836 198 AVPLIQQILQVTGDDVKVQSY-ERL----SP------L---------V-PLNVPLGSFSN-IQTG-DCIVTF-------- 246 (499)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~-~~~----~~------~---------~-~~~~~l~~l~~-~~~~-~~iv~~-------- 246 (499)
+.+ .+.+.......+..... .+. .| . . .....+..+.+ +..+ ++++|.
T Consensus 303 Tps-~~s~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~~g~qvll~~nrrGy~~~ 381 (679)
T PRK05580 303 TPS-LESLANAQQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLERGEQVLLFLNRRGYAPF 381 (679)
T ss_pred CCC-HHHHHHHhccceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHHcCCeEEEEEcCCCCCCc
Confidence 322 22222111111111100 000 00 0 0 00000000100 1111 222221
Q ss_pred -----------------------------------------------------eHHHHHHHHHHHHHc-CCCeEEEEcCC
Q 010836 247 -----------------------------------------------------SRHAIYRLKKAIESR-GKHLCSIVYGS 272 (499)
Q Consensus 247 -----------------------------------------------------s~~~~~~l~~~L~~~-~~~~v~~~hg~ 272 (499)
....++++++.|.+. +..++..+|++
T Consensus 382 ~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d 461 (679)
T PRK05580 382 LLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRD 461 (679)
T ss_pred eEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEecc
Confidence 223577888888776 34589999999
Q ss_pred CC--HHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEccc--ccccCc-cccccChhhHHhhhccCCCCCCC
Q 010836 273 LP--PETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTM--KKFDGV-ELRDLTVPEVKQIAGRAGRYGSK 346 (499)
Q Consensus 273 l~--~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~--~~~~~~-~~~p~s~~~~~Qr~GRagR~g~~ 346 (499)
+. .+++.++++.|++ |+.+|||+|+++++|+|+| ++.|+..+. ..+.++ +......+.|.|++||+||.+..
T Consensus 462 ~~~~~~~~~~~l~~f~~--g~~~ILVgT~~iakG~d~p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~~~ 539 (679)
T PRK05580 462 TTRRKGALEQLLAQFAR--GEADILIGTQMLAKGHDFPNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAEKP 539 (679)
T ss_pred ccccchhHHHHHHHHhc--CCCCEEEEChhhccCCCCCCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCCCC
Confidence 86 4578899999999 9999999999999999997 998865443 322222 23334578999999999998877
Q ss_pred CCcEEEEE-EcCCCHHHHHhhhCCCC--------chhhhcCCCChHHHHHHHHhcCCCccHHHHHHHHH
Q 010836 347 FPVGEVTC-LDSEDLPLLHKSLLEPS--------PMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFL 406 (499)
Q Consensus 347 ~~~g~~~~-~~~~~~~~~~~~~~~~~--------~~i~~~~l~~~~~~l~~~~~~~~~~~l~~~l~~~~ 406 (499)
|.|+. .+..+.+.++.+.+... ++....++.|....+........+....+....+.
T Consensus 540 ---g~viiqT~~p~~~~~~~~~~~d~~~f~~~El~~R~~~~~PPf~~l~~i~~~~~~~~~~~~~~~~~~ 605 (679)
T PRK05580 540 ---GEVLIQTYHPEHPVIQALLAQDYDAFAEQELEERRAAGYPPFGRLALLRASAKDEEKAEKFAQQLA 605 (679)
T ss_pred ---CEEEEEeCCCCCHHHHHHHhCCHHHHHHHHHHHHHhcCCCCHHHhhEeEEecCCHHHHHHHHHHHH
Confidence 88764 44444444544444333 33333445555444443333333333344444433
No 85
>PRK13766 Hef nuclease; Provisional
Probab=99.93 E-value=6.1e-25 Score=242.44 Aligned_cols=105 Identities=23% Similarity=0.324 Sum_probs=91.3
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCC--------CCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc
Q 010836 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGS--------LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308 (499)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~--------l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip 308 (499)
..+++|||+ +++.++.+++.|...+. .+..+||. +++.+|..+++.|++ |+.+|||||+++++|+|+|
T Consensus 364 ~~~kvlIF~~~~~t~~~L~~~L~~~~~-~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~--g~~~vLvaT~~~~eGldi~ 440 (773)
T PRK13766 364 PDSRIIVFTQYRDTAEKIVDLLEKEGI-KAVRFVGQASKDGDKGMSQKEQIEILDKFRA--GEFNVLVSTSVAEEGLDIP 440 (773)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHhCCC-ceEEEEccccccccCCCCHHHHHHHHHHHHc--CCCCEEEECChhhcCCCcc
Confidence 445677777 89999999999977766 77888876 999999999999999 9999999999999999997
Q ss_pred -ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC
Q 010836 309 -ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 309 -v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~ 358 (499)
+++||+|+. +.+...|+||+||+||.|+ |.++.+..+
T Consensus 441 ~~~~VI~yd~---------~~s~~r~iQR~GR~gR~~~----~~v~~l~~~ 478 (773)
T PRK13766 441 SVDLVIFYEP---------VPSEIRSIQRKGRTGRQEE----GRVVVLIAK 478 (773)
T ss_pred cCCEEEEeCC---------CCCHHHHHHHhcccCcCCC----CEEEEEEeC
Confidence 999999998 6799999999999999987 566655543
No 86
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=99.93 E-value=1.3e-24 Score=224.49 Aligned_cols=104 Identities=21% Similarity=0.286 Sum_probs=84.9
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcCCC--eEEEEc--------CCCCHHHHHHHHHHhcCCCCCccEEEecchhhccccc
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRGKH--LCSIVY--------GSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~--~v~~~h--------g~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidi 307 (499)
..+.|+|. +|..|+.+.++|.+.... +...+- .+|++.++.++++.|++ |+.+|||||+++++|+||
T Consensus 413 dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~--G~~NvLVATSV~EEGLDI 490 (746)
T KOG0354|consen 413 DSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRD--GEINVLVATSVAEEGLDI 490 (746)
T ss_pred CccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhC--CCccEEEEecchhccCCc
Confidence 34566666 899999999999843211 222222 47999999999999999 999999999999999999
Q ss_pred c-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC
Q 010836 308 N-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 308 p-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~ 358 (499)
+ ++.||-||.. .+....+||.|| ||... |.|+.+...
T Consensus 491 ~ec~lVIcYd~~---------snpIrmIQrrGR-gRa~n----s~~vll~t~ 528 (746)
T KOG0354|consen 491 GECNLVICYDYS---------SNPIRMVQRRGR-GRARN----SKCVLLTTG 528 (746)
T ss_pred ccccEEEEecCC---------ccHHHHHHHhcc-ccccC----CeEEEEEcc
Confidence 7 9999999984 388999999999 99987 788777663
No 87
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=1.7e-24 Score=224.39 Aligned_cols=283 Identities=14% Similarity=0.129 Sum_probs=172.7
Q ss_pred EEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHh-cCCceeEeeCCeecc----------cCCCceE
Q 010836 81 LHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNK-ANVSCDLITGQEREE----------VDGAKHR 145 (499)
Q Consensus 81 li~apTGsGKT~~~l~~l----~~~~~~l~l~P~r~La~q~~~~l~~-~g~~~~~~~g~~~~~----------~~~~~~i 145 (499)
++.||||||||.+++..+ .++++++|++|+++|+.|+++++++ +|.++.+++|..... ....+++
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g~~~IV 80 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNGEILVV 80 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcCCCCEE
Confidence 478999999999986544 4567899999999999999999985 688888888754321 1245677
Q ss_pred EEcee-eccccCCccEEEEecCcccCCCCC-ChhH---HHH-HhccccccceEeecCCCchHHHHHHHHcCCeEEEEee-
Q 010836 146 AVTVE-MADVVSDYDCAVIDEIQMLGCKTR-GFSF---TRA-LLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY- 218 (499)
Q Consensus 146 v~T~e-~~~~l~~~~~iViDEah~~~~~~~-g~~~---~~~-ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~- 218 (499)
|+|.. .+..+.++++|||||+|+.+..+. ++.+ ..+ +.+.. ....++..+++ |..+.+.......+.....
T Consensus 81 VGTrsalf~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~-~~~~vil~SAT-Psles~~~~~~g~~~~~~l~ 158 (505)
T TIGR00595 81 IGTRSALFLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKK-FNCPVVLGSAT-PSLESYHNAKQKAYRLLVLT 158 (505)
T ss_pred ECChHHHcCcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHh-cCCCEEEEeCC-CCHHHHHHHhcCCeEEeech
Confidence 77763 334578999999999999874322 2221 111 12222 22333333333 2233333222212211110
Q ss_pred eecC----------CCC------c-ccccccccc-ccC-CCCEEEEeeH-------------------------------
Q 010836 219 ERLS----------PLV------P-LNVPLGSFS-NIQ-TGDCIVTFSR------------------------------- 248 (499)
Q Consensus 219 ~~~~----------~~~------~-~~~~l~~l~-~~~-~~~~iv~~s~------------------------------- 248 (499)
.+.. .+. . ....+..+. .+. .+++++|..+
T Consensus 159 ~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~ 238 (505)
T TIGR00595 159 RRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKE 238 (505)
T ss_pred hhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCC
Confidence 0000 000 0 000111111 112 2344444211
Q ss_pred ------------------------------HHHHHHHHHHHHc-CCCeEEEEcCCCCHHHH--HHHHHHhcCCCCCccEE
Q 010836 249 ------------------------------HAIYRLKKAIESR-GKHLCSIVYGSLPPETR--TRQATRFNDASSEFDVL 295 (499)
Q Consensus 249 ------------------------------~~~~~l~~~L~~~-~~~~v~~~hg~l~~~~R--~~~~~~f~~~~g~~~iL 295 (499)
-.++++.+.|.+. +..++..+|++++...+ .++++.|++ |+.+||
T Consensus 239 ~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~--g~~~IL 316 (505)
T TIGR00595 239 GKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAHEALLNQFAN--GKADIL 316 (505)
T ss_pred CeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhc--CCCCEE
Confidence 1257788888775 34589999999987665 789999999 999999
Q ss_pred Eecchhhcccccc-ccEEE--EcccccccCc-cccccChhhHHhhhccCCCCCCCCCcEEEE-EEcCCCHHHHHhhhCCC
Q 010836 296 VASDAIGMGLNLN-ISRII--FSTMKKFDGV-ELRDLTVPEVKQIAGRAGRYGSKFPVGEVT-CLDSEDLPLLHKSLLEP 370 (499)
Q Consensus 296 vaT~~~~~Gidip-v~~VI--~~~~~~~~~~-~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~-~~~~~~~~~~~~~~~~~ 370 (499)
|+|+++++|+|+| |+.|+ +.|..-+.++ +......+.+.|++||+||.+.. |.++ ..+..+.+.++.+....
T Consensus 317 VgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~~~~ll~q~~GRagR~~~~---g~viiqt~~p~~~~~~~~~~~d 393 (505)
T TIGR00595 317 IGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAERGFQLLTQVAGRAGRAEDP---GQVIIQTYNPNHPAIQAALTGD 393 (505)
T ss_pred EeCcccccCCCCCcccEEEEEcCcccccCcccchHHHHHHHHHHHHhccCCCCCC---CEEEEEeCCCCCHHHHHHHhCC
Confidence 9999999999997 88876 4444333332 23334678899999999998877 7776 44444444454444433
No 88
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=4.4e-24 Score=222.36 Aligned_cols=109 Identities=21% Similarity=0.244 Sum_probs=87.0
Q ss_pred CCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-cc-------
Q 010836 240 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-IS------- 310 (499)
Q Consensus 240 ~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~------- 310 (499)
..++||+ |++.++.+++.|.+.+. .+..+||+.+..+ ..+..|.. +...|+||||+++||+||+ ..
T Consensus 474 ~pvLIft~t~~~se~L~~~L~~~gi-~~~~Lhg~~~~rE--~~ii~~ag--~~g~VlVATdmAgRGtDI~l~~~V~~~GG 548 (656)
T PRK12898 474 RPVLVGTRSVAASERLSALLREAGL-PHQVLNAKQDAEE--AAIVARAG--QRGRITVATNMAGRGTDIKLEPGVAARGG 548 (656)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHCCC-CEEEeeCCcHHHH--HHHHHHcC--CCCcEEEEccchhcccCcCCccchhhcCC
Confidence 4466666 89999999999999876 9999999866544 44444554 4457999999999999996 33
Q ss_pred -EEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCHHHHHh
Q 010836 311 -RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHK 365 (499)
Q Consensus 311 -~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~~~~~~ 365 (499)
+||+++. |.+...|.||+||+||.|.. |.++.+.+.+...+..
T Consensus 549 LhVI~~d~---------P~s~r~y~hr~GRTGRqG~~---G~s~~~is~eD~l~~~ 592 (656)
T PRK12898 549 LHVILTER---------HDSARIDRQLAGRCGRQGDP---GSYEAILSLEDDLLQS 592 (656)
T ss_pred CEEEEcCC---------CCCHHHHHHhcccccCCCCC---eEEEEEechhHHHHHh
Confidence 8999999 77999999999999999988 8887776654444433
No 89
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=5.1e-24 Score=226.49 Aligned_cols=108 Identities=19% Similarity=0.186 Sum_probs=91.6
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccccc---c-cc---
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL---N-IS--- 310 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidi---p-v~--- 310 (499)
...++||+ |++.++.+++.|.+.+. .+..+||++...++..+...++. | +|+||||+++||+|| | |.
T Consensus 428 ~~pvLIf~~t~~~se~l~~~L~~~gi-~~~~L~~~~~~~e~~~i~~ag~~--g--~VlIATdmAgRG~DI~l~~~V~~~G 502 (790)
T PRK09200 428 GRPVLIGTGSIEQSETFSKLLDEAGI-PHNLLNAKNAAKEAQIIAEAGQK--G--AVTVATNMAGRGTDIKLGEGVHELG 502 (790)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCC-CEEEecCCccHHHHHHHHHcCCC--C--eEEEEccchhcCcCCCccccccccc
Confidence 44567776 89999999999999876 99999999998888878777776 5 699999999999999 5 87
Q ss_pred --EEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCHHHH
Q 010836 311 --RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLL 363 (499)
Q Consensus 311 --~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~~~~ 363 (499)
+||+++. |.+...|.||+||+||.|.. |.++.+.+.+...+
T Consensus 503 GL~VI~~d~---------p~s~r~y~qr~GRtGR~G~~---G~s~~~is~eD~l~ 545 (790)
T PRK09200 503 GLAVIGTER---------MESRRVDLQLRGRSGRQGDP---GSSQFFISLEDDLL 545 (790)
T ss_pred CcEEEeccC---------CCCHHHHHHhhccccCCCCC---eeEEEEEcchHHHH
Confidence 9999999 77999999999999999988 88766655443333
No 90
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.92 E-value=1.3e-24 Score=232.93 Aligned_cols=326 Identities=16% Similarity=0.178 Sum_probs=219.4
Q ss_pred cccCchhhhc-cCCCCCCccchhccCccCCCcHHHHhhhccCCC-----------------ccccCCCCCchhc-cchHH
Q 010836 12 SALGIPRILR-DNVEPFSLNSEKIIGAFASVDVIIRSYCSGSGM-----------------KKFDFTDLTRPHT-WYPLA 72 (499)
Q Consensus 12 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~-----------------~~~~~~~l~~~q~-~~~~~ 72 (499)
..-+-.+-++ -++..|.....+....+..+..++.+...+++. ..|.|. -|+-|. ++..+
T Consensus 528 g~~~~~p~L~kLG~~~W~k~K~K~~~~v~diA~eLi~lyA~R~~~~G~af~~d~~~q~~F~~~FPye-ET~DQl~AI~eV 606 (1139)
T COG1197 528 GASDEAPKLHKLGGGAWKKAKAKARKKVRDIAAELIKLYAKRQAKKGFAFPPDTEWQEEFEASFPYE-ETPDQLKAIEEV 606 (1139)
T ss_pred CCCCCCccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCChHHHHHHHhcCCCc-CCHHHHHHHHHH
Confidence 3334433343 566778887777666666666666666555432 122332 233444 54444
Q ss_pred Hh----cCCceEEEEccCCccHHHHHHH----HHHcCCCEEEEccHHHHHHHHHHHHHh----cCCceeEeeCCeecc--
Q 010836 73 RK----KVRKVILHVGPTNSGKTHQALS----RLESSSSGIYCGPLRLLAWEVAKRLNK----ANVSCDLITGQEREE-- 138 (499)
Q Consensus 73 ~~----~~~~~vli~apTGsGKT~~~l~----~l~~~~~~l~l~P~r~La~q~~~~l~~----~g~~~~~~~g~~~~~-- 138 (499)
.. ...-|=++||.-|.|||.+|+. ++.+++++.++|||..||+|.++.|++ +.+++..+.......
T Consensus 607 k~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~~fPV~I~~LSRF~s~kE~ 686 (1139)
T COG1197 607 KRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFAGFPVRIEVLSRFRSAKEQ 686 (1139)
T ss_pred HHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhcCCCeeEEEecccCCHHHH
Confidence 21 1345679999999999999864 456788999999999999999998875 456666655432211
Q ss_pred --------cCCCceEEEceeeccc---cCCccEEEEecCcccCCCCCChhHHHHHhccccccceEeecCCC-chH-----
Q 010836 139 --------VDGAKHRAVTVEMADV---VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAA-VPL----- 201 (499)
Q Consensus 139 --------~~~~~~iv~T~e~~~~---l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~~~~~~~~~-~~~----- 201 (499)
....++||+|-..+.- ..+++++||||.|+.+.. ....|-.+ ...+.++..++| +|-
T Consensus 687 ~~il~~la~G~vDIvIGTHrLL~kdv~FkdLGLlIIDEEqRFGVk-----~KEkLK~L-r~~VDvLTLSATPIPRTL~Ms 760 (1139)
T COG1197 687 KEILKGLAEGKVDIVIGTHRLLSKDVKFKDLGLLIIDEEQRFGVK-----HKEKLKEL-RANVDVLTLSATPIPRTLNMS 760 (1139)
T ss_pred HHHHHHHhcCCccEEEechHhhCCCcEEecCCeEEEechhhcCcc-----HHHHHHHH-hccCcEEEeeCCCCcchHHHH
Confidence 2245788888877753 488999999999998654 22233222 233444443332 111
Q ss_pred ---HHHH---HHHcCCeEEEEeeeecCCCCccccccccccccC-CCCEEEEe-eHHHHHHHHHHHHHc-CCCeEEEEcCC
Q 010836 202 ---IQQI---LQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQ-TGDCIVTF-SRHAIYRLKKAIESR-GKHLCSIVYGS 272 (499)
Q Consensus 202 ---~~~l---~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~iv~~-s~~~~~~l~~~L~~~-~~~~v~~~hg~ 272 (499)
++++ ..-+.+.+.+..|.....-....++ .+.++. .|++.++. ..+.++++++.|++. +..++++.||.
T Consensus 761 m~GiRdlSvI~TPP~~R~pV~T~V~~~d~~~ireA--I~REl~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQ 838 (1139)
T COG1197 761 LSGIRDLSVIATPPEDRLPVKTFVSEYDDLLIREA--ILRELLRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQ 838 (1139)
T ss_pred HhcchhhhhccCCCCCCcceEEEEecCChHHHHHH--HHHHHhcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecC
Confidence 1111 1122234555555433221111111 223333 44544444 689999999999886 45689999999
Q ss_pred CCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEE
Q 010836 273 LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGE 351 (499)
Q Consensus 273 l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~ 351 (499)
|+..+-..++..|.+ |+.+|||||.+++.||||| ++.+|..+..+| -.++..|..||+||.... |+
T Consensus 839 M~e~eLE~vM~~F~~--g~~dVLv~TTIIEtGIDIPnANTiIIe~AD~f--------GLsQLyQLRGRVGRS~~~---AY 905 (1139)
T COG1197 839 MRERELEEVMLDFYN--GEYDVLVCTTIIETGIDIPNANTIIIERADKF--------GLAQLYQLRGRVGRSNKQ---AY 905 (1139)
T ss_pred CCHHHHHHHHHHHHc--CCCCEEEEeeeeecCcCCCCCceEEEeccccc--------cHHHHHHhccccCCccce---EE
Confidence 999999999999999 9999999999999999998 999998877665 489999999999999988 99
Q ss_pred EEEEcCCC
Q 010836 352 VTCLDSED 359 (499)
Q Consensus 352 ~~~~~~~~ 359 (499)
||.+++.+
T Consensus 906 AYfl~p~~ 913 (1139)
T COG1197 906 AYFLYPPQ 913 (1139)
T ss_pred EEEeecCc
Confidence 99998864
No 91
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.92 E-value=2.5e-24 Score=219.32 Aligned_cols=280 Identities=21% Similarity=0.251 Sum_probs=190.6
Q ss_pred CCCCchhc-cchHHHhc----CCceEEEEccCCccHHHHHHH----HHHcCCCEEEEccHHHHHHHHHHHHHh----cCC
Q 010836 60 TDLTRPHT-WYPLARKK----VRKVILHVGPTNSGKTHQALS----RLESSSSGIYCGPLRLLAWEVAKRLNK----ANV 126 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~----~~~~vli~apTGsGKT~~~l~----~l~~~~~~l~l~P~r~La~q~~~~l~~----~g~ 126 (499)
..||..|+ ++..+..- ..-+=+++|.-|||||.+|+. .+..+.++..++||-.||.|.++.+.+ +|+
T Consensus 261 F~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~i 340 (677)
T COG1200 261 FKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLGI 340 (677)
T ss_pred CCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcCC
Confidence 45788887 66655321 123447999999999999744 444567899999999999999988875 589
Q ss_pred ceeEeeCCeecc----------cCCCceEEEceeecc---ccCCccEEEEecCcccCCCCCChhHHHHHhccccccceEe
Q 010836 127 SCDLITGQEREE----------VDGAKHRAVTVEMAD---VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLC 193 (499)
Q Consensus 127 ~~~~~~g~~~~~----------~~~~~~iv~T~e~~~---~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~~~~ 193 (499)
++.+++|..... ....+++|.|-..+. ...++.++|+||-|+++.. -...|..--....+++
T Consensus 341 ~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~V~F~~LgLVIiDEQHRFGV~-----QR~~L~~KG~~~Ph~L 415 (677)
T COG1200 341 RVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDKVEFHNLGLVIIDEQHRFGVH-----QRLALREKGEQNPHVL 415 (677)
T ss_pred eEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcceeecceeEEEEeccccccHH-----HHHHHHHhCCCCCcEE
Confidence 999999965432 224677777775553 2488999999999998643 2233322222134444
Q ss_pred ecCCCchHHHHHH-HHcCC------------eEEEEeeeecCCCCccccccccc-cccCCCC-EEEEe-----e----HH
Q 010836 194 GDPAAVPLIQQIL-QVTGD------------DVKVQSYERLSPLVPLNVPLGSF-SNIQTGD-CIVTF-----S----RH 249 (499)
Q Consensus 194 ~~~~~~~~~~~l~-~~~~~------------~~~~~~~~~~~~~~~~~~~l~~l-~~~~~~~-~iv~~-----s----~~ 249 (499)
-++++ |+.+.++ ...|+ ..++..+.- +.+.....+..+ .++.+|. +.++| | -.
T Consensus 416 vMTAT-PIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i--~~~~~~~v~e~i~~ei~~GrQaY~VcPLIeESE~l~l~ 492 (677)
T COG1200 416 VMTAT-PIPRTLALTAFGDLDVSIIDELPPGRKPITTVVI--PHERRPEVYERIREEIAKGRQAYVVCPLIEESEKLELQ 492 (677)
T ss_pred EEeCC-CchHHHHHHHhccccchhhccCCCCCCceEEEEe--ccccHHHHHHHHHHHHHcCCEEEEEeccccccccchhh
Confidence 44432 3333333 22222 112222111 111111111111 1223444 33333 2 14
Q ss_pred HHHHHHHHHHHcC-CCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccccccCccccc
Q 010836 250 AIYRLKKAIESRG-KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRD 327 (499)
Q Consensus 250 ~~~~l~~~L~~~~-~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p 327 (499)
.++++++.|+... ..++..+||.|++++++++++.|++ |+.+|||||.++|.|||+| .+.+|+.+..+|
T Consensus 493 ~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~--~e~~ILVaTTVIEVGVdVPnATvMVIe~AERF------- 563 (677)
T COG1200 493 AAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKE--GEIDILVATTVIEVGVDVPNATVMVIENAERF------- 563 (677)
T ss_pred hHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHc--CCCcEEEEeeEEEecccCCCCeEEEEechhhh-------
Confidence 6778888887543 4569999999999999999999999 9999999999999999998 888888888765
Q ss_pred cChhhHHhhhccCCCCCCCCCcEEEEEEcCCCH
Q 010836 328 LTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL 360 (499)
Q Consensus 328 ~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~ 360 (499)
-.++..|-.||+||.+.. ++|+.++....
T Consensus 564 -GLaQLHQLRGRVGRG~~q---SyC~Ll~~~~~ 592 (677)
T COG1200 564 -GLAQLHQLRGRVGRGDLQ---SYCVLLYKPPL 592 (677)
T ss_pred -hHHHHHHhccccCCCCcc---eEEEEEeCCCC
Confidence 599999999999999988 99999987764
No 92
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.92 E-value=5.3e-24 Score=221.61 Aligned_cols=339 Identities=21% Similarity=0.212 Sum_probs=232.4
Q ss_pred CCCCCccchhccCccCCCcHHHHhh-hccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHH-H----H
Q 010836 24 VEPFSLNSEKIIGAFASVDVIIRSY-CSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA-L----S 96 (499)
Q Consensus 24 ~~~~~~~~~~~~~~~~~l~~~l~~~-l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~-l----~ 96 (499)
...|.....-.++..+.+++.+... .+.. |+.++.++|. ++..-+.+++++.+..+||+.|||+++ + .
T Consensus 190 ~~~~~~~etl~~~~a~~~~~k~~~~~~~~k-----gi~~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~ 264 (1008)
T KOG0950|consen 190 PLGPTYLETLLFGFAKRLPTKVSHLYAKDK-----GILKLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLRE 264 (1008)
T ss_pred CCCccchhhhhhhhhhcCchHHHHHHHHhh-----hHHHHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHH
Confidence 3444443333344444555544443 3444 8999999999 666555578999999999999999997 2 2
Q ss_pred HHHcCCCEEEEccHHHHHHHHHHHHHh----cCCceeEeeCCeecc--cCCCceEEEceeeccc----------cCCccE
Q 010836 97 RLESSSSGIYCGPLRLLAWEVAKRLNK----ANVSCDLITGQEREE--VDGAKHRAVTVEMADV----------VSDYDC 160 (499)
Q Consensus 97 ~l~~~~~~l~l~P~r~La~q~~~~l~~----~g~~~~~~~g~~~~~--~~~~~~iv~T~e~~~~----------l~~~~~ 160 (499)
.+...+.++.+.|..+.+.+-...+.. +|+.+...+|..... .+...+-+||.|+.+. +..+++
T Consensus 265 ~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~~ve~y~g~~~p~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~ 344 (1008)
T KOG0950|consen 265 VLCRRRNVLLILPYVSIVQEKISALSPFSIDLGFPVEEYAGRFPPEKRRKRESVAIATIEKANSLINSLIEQGRLDFLGM 344 (1008)
T ss_pred HHHHhhceeEecceeehhHHHHhhhhhhccccCCcchhhcccCCCCCcccceeeeeeehHhhHhHHHHHHhcCCccccCc
Confidence 233456778888888888777776664 466666666544322 2245677999998754 367899
Q ss_pred EEEecCcccCCCCCChhHHHH----HhccccccceEeecCCCchHHHHHHHHcCCeEEEEeeeecCCCCc---------c
Q 010836 161 AVIDEIQMLGCKTRGFSFTRA----LLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP---------L 227 (499)
Q Consensus 161 iViDEah~~~~~~~g~~~~~~----ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~---------~ 227 (499)
|||||-|++.+..||+..... ++.-..+.++++|+++++++...+..|....+....+ |+.++.. .
T Consensus 345 vvVdElhmi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~f-RPv~L~E~ik~G~~i~~ 423 (1008)
T KOG0950|consen 345 VVVDELHMIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWLDAFVYTTRF-RPVPLKEYIKPGSLIYE 423 (1008)
T ss_pred EEEeeeeeeeccccchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHhhhhheeccc-CcccchhccCCCccccc
Confidence 999999999999999986543 4444455688999999999998888876643332221 2222110 0
Q ss_pred c---cccccc---------------------cccCCC-CEEEEe-eHHHHHHHHHHHHHc--------------------
Q 010836 228 N---VPLGSF---------------------SNIQTG-DCIVTF-SRHAIYRLKKAIESR-------------------- 261 (499)
Q Consensus 228 ~---~~l~~l---------------------~~~~~~-~~iv~~-s~~~~~~l~~~L~~~-------------------- 261 (499)
. ..+..+ ...+.+ .+++|+ +++.|+.++..+...
T Consensus 424 ~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s 503 (1008)
T KOG0950|consen 424 SSRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSIS 503 (1008)
T ss_pred chhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHH
Confidence 0 000000 111333 377777 898888877555331
Q ss_pred -----------------CCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccccccccEEEEcccccccCcc
Q 010836 262 -----------------GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVE 324 (499)
Q Consensus 262 -----------------~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidipv~~VI~~~~~~~~~~~ 324 (499)
-...+++||++++.++|..+...|++ |...|++||+.++.|+|+|++.||.-... + .
T Consensus 504 ~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~--g~i~vl~aTSTlaaGVNLPArRVIiraP~-~---g 577 (1008)
T KOG0950|consen 504 NLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFRE--GNIFVLVATSTLAAGVNLPARRVIIRAPY-V---G 577 (1008)
T ss_pred hHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHh--cCeEEEEecchhhccCcCCcceeEEeCCc-c---c
Confidence 11248999999999999999999999 99999999999999999999999975432 1 2
Q ss_pred ccccChhhHHhhhccCCCCCCCCCcEEEEE-EcCCCHHHHHhhhCCCCchhh
Q 010836 325 LRDLTVPEVKQIAGRAGRYGSKFPVGEVTC-LDSEDLPLLHKSLLEPSPMLE 375 (499)
Q Consensus 325 ~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~i~ 375 (499)
....+..+|.|++|||||.|-+ ..|.++. +...+...+.+++..+.+...
T Consensus 578 ~~~l~~~~YkQM~GRAGR~gid-T~GdsiLI~k~~e~~~~~~lv~~~~~~~~ 628 (1008)
T KOG0950|consen 578 REFLTRLEYKQMVGRAGRTGID-TLGDSILIIKSSEKKRVRELVNSPLKPLN 628 (1008)
T ss_pred cchhhhhhHHhhhhhhhhcccc-cCcceEEEeeccchhHHHHHHhccccccc
Confidence 2356889999999999999986 5675543 344444555577766655443
No 93
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.91 E-value=1.2e-23 Score=235.34 Aligned_cols=251 Identities=19% Similarity=0.223 Sum_probs=162.2
Q ss_pred cCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHH---H-HcCCCEEEEccHHHHHHHHHHHHHhc----CCce
Q 010836 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR---L-ESSSSGIYCGPLRLLAWEVAKRLNKA----NVSC 128 (499)
Q Consensus 58 ~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~---l-~~~~~~l~l~P~r~La~q~~~~l~~~----g~~~ 128 (499)
....|+++|+ |+|.+ +.+++++++||||||||+.++.. + .++.+++|++||++||.|+++.+.++ |+.+
T Consensus 75 ~g~~p~~iQ~~~i~~i--l~G~d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~ 152 (1171)
T TIGR01054 75 VGSEPWSIQKMWAKRV--LRGDSFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGT 152 (1171)
T ss_pred cCCCCcHHHHHHHHHH--hCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCce
Confidence 4457999999 99988 77999999999999999854322 2 23568999999999999999999864 3333
Q ss_pred ---eEeeCCeecc----------cCCCceEEEceeecc----ccC-CccEEEEecCcccCCCCC---------ChhH---
Q 010836 129 ---DLITGQEREE----------VDGAKHRAVTVEMAD----VVS-DYDCAVIDEIQMLGCKTR---------GFSF--- 178 (499)
Q Consensus 129 ---~~~~g~~~~~----------~~~~~~iv~T~e~~~----~l~-~~~~iViDEah~~~~~~~---------g~~~--- 178 (499)
..++|+.... ..+.+++|+||..+. .+. +++++||||||++++..+ |+.-
T Consensus 153 ~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~~~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i 232 (1171)
T TIGR01054 153 VNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELGPKFDFIFVDDVDALLKASKNVDKLLKLLGFSEELI 232 (1171)
T ss_pred eeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhcCCCCEEEEeChHhhhhccccHHHHHHHcCCCHHHH
Confidence 2456653221 124788899995442 123 799999999999987432 3321
Q ss_pred HHHH---------------------h-ccccc-cceEeecCCC-ch-HHH-HHHHHc-CCeE--------EEEeeeecCC
Q 010836 179 TRAL---------------------L-GICAN-ELHLCGDPAA-VP-LIQ-QILQVT-GDDV--------KVQSYERLSP 223 (499)
Q Consensus 179 ~~~l---------------------l-~l~~~-~~~~~~~~~~-~~-~~~-~l~~~~-~~~~--------~~~~~~~~~~ 223 (499)
..++ + .+..+ ...++..+++ .+ ..+ .++... +... .+........
T Consensus 233 ~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~~~v~~~~~~~r~I~~~~~~~~ 312 (1171)
T TIGR01054 233 EKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLGFEVGGGSDTLRNVVDVYVEDE 312 (1171)
T ss_pred HHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccceEecCccccccceEEEEEecc
Confidence 1110 0 11111 1123323333 22 121 222111 1000 0111111000
Q ss_pred CCcccccc-ccccccCCCCEEEEe-eH---HHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEe-
Q 010836 224 LVPLNVPL-GSFSNIQTGDCIVTF-SR---HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA- 297 (499)
Q Consensus 224 ~~~~~~~l-~~l~~~~~~~~iv~~-s~---~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLva- 297 (499)
.....+ ..+.... ...|||+ ++ +.++++++.|++.+. ++..+||+++. ..++.|++ |+++||||
T Consensus 313 --~~~~~L~~ll~~l~-~~~IVFv~t~~~~~~a~~l~~~L~~~g~-~a~~lhg~~~~----~~l~~Fr~--G~~~vLVat 382 (1171)
T TIGR01054 313 --DLKETLLEIVKKLG-TGGIVYVSIDYGKEKAEEIAEFLENHGV-KAVAYHATKPK----EDYEKFAE--GEIDVLIGV 382 (1171)
T ss_pred --cHHHHHHHHHHHcC-CCEEEEEeccccHHHHHHHHHHHHhCCc-eEEEEeCCCCH----HHHHHHHc--CCCCEEEEe
Confidence 001112 2223333 4456655 77 999999999998876 99999999973 68899999 99999999
Q ss_pred ---cchhhcccccc--ccEEEEcccccc
Q 010836 298 ---SDAIGMGLNLN--ISRIIFSTMKKF 320 (499)
Q Consensus 298 ---T~~~~~Gidip--v~~VI~~~~~~~ 320 (499)
||+++||||+| |++|||+|++++
T Consensus 383 a~~tdv~aRGIDip~~V~~vI~~~~P~~ 410 (1171)
T TIGR01054 383 ASYYGTLVRGLDLPERVRYAVFLGVPKF 410 (1171)
T ss_pred ccccCcccccCCCCccccEEEEECCCCE
Confidence 59999999997 799999999985
No 94
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.91 E-value=4.1e-23 Score=217.64 Aligned_cols=103 Identities=17% Similarity=0.180 Sum_probs=84.1
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc---------
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN--------- 308 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip--------- 308 (499)
...++||+ |++.++.+++.|.+.+. .+..+||++.+.+|..+.+.++. | .|+||||+++||+||+
T Consensus 424 ~~pvLIft~s~~~se~ls~~L~~~gi-~~~~L~a~~~~~E~~ii~~ag~~--g--~VlIATdmAgRGtDI~l~~~v~~~G 498 (762)
T TIGR03714 424 GQPVLLITGSVEMSEIYSELLLREGI-PHNLLNAQNAAKEAQIIAEAGQK--G--AVTVATSMAGRGTDIKLGKGVAELG 498 (762)
T ss_pred CCCEEEEECcHHHHHHHHHHHHHCCC-CEEEecCCChHHHHHHHHHcCCC--C--eEEEEccccccccCCCCCccccccC
Confidence 44567777 89999999999998877 89999999999988888877776 5 6999999999999997
Q ss_pred -ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 309 -ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 309 -v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
+.+|++++. |....+ .||+||+||.|.. |.++.+.+.+
T Consensus 499 GL~vIit~~~---------ps~rid-~qr~GRtGRqG~~---G~s~~~is~e 537 (762)
T TIGR03714 499 GLAVIGTERM---------ENSRVD-LQLRGRSGRQGDP---GSSQFFVSLE 537 (762)
T ss_pred CeEEEEecCC---------CCcHHH-HHhhhcccCCCCc---eeEEEEEccc
Confidence 456667776 334444 9999999999988 8876665544
No 95
>PRK09694 helicase Cas3; Provisional
Probab=99.91 E-value=3.7e-23 Score=223.80 Aligned_cols=272 Identities=17% Similarity=0.157 Sum_probs=168.9
Q ss_pred CCCCCchhccchHHHhcCCceEEEEccCCccHHHHHHHHHH---cC---CCEEEEccHHHHHHHHHHHHHh-----c-CC
Q 010836 59 FTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLE---SS---SSGIYCGPLRLLAWEVAKRLNK-----A-NV 126 (499)
Q Consensus 59 ~~~l~~~q~~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~---~~---~~~l~l~P~r~La~q~~~~l~~-----~-g~ 126 (499)
...+++.|+....+ ...+..+++.+|||+|||.+++.+.. .. .+++|..||+++++++++++.+ + ..
T Consensus 284 ~~~p~p~Q~~~~~~-~~~pgl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~ 362 (878)
T PRK09694 284 GYQPRQLQTLVDAL-PLQPGLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFPSP 362 (878)
T ss_pred CCCChHHHHHHHhh-ccCCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 45788999944332 13577899999999999999865442 22 4678889999999999999874 1 24
Q ss_pred ceeEeeCCeecc-----------------------------c-C---CCceEEEceeec---------cccCC----ccE
Q 010836 127 SCDLITGQEREE-----------------------------V-D---GAKHRAVTVEMA---------DVVSD----YDC 160 (499)
Q Consensus 127 ~~~~~~g~~~~~-----------------------------~-~---~~~~iv~T~e~~---------~~l~~----~~~ 160 (499)
.+.+.+|..... . + -++++|+|+..+ .+++. -++
T Consensus 363 ~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~sv 442 (878)
T PRK09694 363 NLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSV 442 (878)
T ss_pred ceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCe
Confidence 566666642200 0 0 158889998332 12222 359
Q ss_pred EEEecCcccCCCCCChhH-HHHHhccccccceEeecCCCch--HHHHHHHHcCCe--------EEEE---------eee-
Q 010836 161 AVIDEIQMLGCKTRGFSF-TRALLGICANELHLCGDPAAVP--LIQQILQVTGDD--------VKVQ---------SYE- 219 (499)
Q Consensus 161 iViDEah~~~~~~~g~~~-~~~ll~l~~~~~~~~~~~~~~~--~~~~l~~~~~~~--------~~~~---------~~~- 219 (499)
|||||+|.+... ...+ ...+..+.+....++-.++|.+ ..+.+....+.. ++.. .+.
T Consensus 443 vIiDEVHAyD~y--m~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~~~~~~~~~~~~ 520 (878)
T PRK09694 443 LIVDEVHAYDAY--MYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITWRGVNGAQRFDL 520 (878)
T ss_pred EEEechhhCCHH--HHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccccccccceeeec
Confidence 999999998532 1111 2222222222233444444543 334444432211 1110 000
Q ss_pred --e----cCCCCcc------------cccccccc-ccCC-CCEEEEe-eHHHHHHHHHHHHHcC--CCeEEEEcCCCCHH
Q 010836 220 --R----LSPLVPL------------NVPLGSFS-NIQT-GDCIVTF-SRHAIYRLKKAIESRG--KHLCSIVYGSLPPE 276 (499)
Q Consensus 220 --~----~~~~~~~------------~~~l~~l~-~~~~-~~~iv~~-s~~~~~~l~~~L~~~~--~~~v~~~hg~l~~~ 276 (499)
. ..+.... ...+..+. .... +.++||+ |++.+.++++.|++.. ...+..+||.++..
T Consensus 521 ~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~v~llHsrf~~~ 600 (878)
T PRK09694 521 SAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVDIDLFHARFTLN 600 (878)
T ss_pred cccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCceEEEEeCCCCHH
Confidence 0 0000000 00111111 1233 3444555 8999999999998764 23799999999999
Q ss_pred HHH----HHHHHh-cCCCCC---ccEEEecchhhccccccccEEEEcccccccCccccccChhhHHhhhccCCCCCCC
Q 010836 277 TRT----RQATRF-NDASSE---FDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (499)
Q Consensus 277 ~R~----~~~~~f-~~~~g~---~~iLvaT~~~~~Gidipv~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~ 346 (499)
+|. ++++.| ++ ++ .+|||||+++++|+||+++.+|.... +.+.++||+||+||.+..
T Consensus 601 dR~~~E~~vl~~fgk~--g~r~~~~ILVaTQViE~GLDId~DvlItdla-----------PidsLiQRaGR~~R~~~~ 665 (878)
T PRK09694 601 DRREKEQRVIENFGKN--GKRNQGRILVATQVVEQSLDLDFDWLITQLC-----------PVDLLFQRLGRLHRHHRK 665 (878)
T ss_pred HHHHHHHHHHHHHHhc--CCcCCCeEEEECcchhheeecCCCeEEECCC-----------CHHHHHHHHhccCCCCCC
Confidence 994 566778 54 44 47999999999999999999887644 468999999999999863
No 96
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.90 E-value=3.2e-22 Score=209.61 Aligned_cols=104 Identities=18% Similarity=0.215 Sum_probs=88.5
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc---cc----
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---IS---- 310 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip---v~---- 310 (499)
...++||+ |...++.+++.|.+.+. ....+||+ +.+|...+..|.. +...|+||||+++||+||+ |.
T Consensus 405 grpvLV~t~si~~se~ls~~L~~~gi-~~~~Lna~--q~~rEa~ii~~ag--~~g~VtIATnmAgRGtDI~l~~V~~~GG 479 (745)
T TIGR00963 405 GQPVLVGTTSVEKSELLSNLLKERGI-PHNVLNAK--NHEREAEIIAQAG--RKGAVTIATNMAGRGTDIKLEEVKELGG 479 (745)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHcCC-CeEEeeCC--hHHHHHHHHHhcC--CCceEEEEeccccCCcCCCccchhhcCC
Confidence 33456666 89999999999999887 88999998 7788899999998 8889999999999999994 44
Q ss_pred -EEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 311 -RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 311 -~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
+||+++. |.|...+.||+||+||.|.. |.+..+.+.+
T Consensus 480 l~VI~t~~---------p~s~ri~~q~~GRtGRqG~~---G~s~~~ls~e 517 (745)
T TIGR00963 480 LYVIGTER---------HESRRIDNQLRGRSGRQGDP---GSSRFFLSLE 517 (745)
T ss_pred cEEEecCC---------CCcHHHHHHHhccccCCCCC---cceEEEEecc
Confidence 8999988 77999999999999999998 7765554433
No 97
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.90 E-value=4.2e-22 Score=185.63 Aligned_cols=294 Identities=18% Similarity=0.217 Sum_probs=192.3
Q ss_pred HhhhccCCCccccCCCCCchhc-cchH-HHh-cCCceEEEEccCCccHHHHHH----HHHHcCCCEEEEccHHHHHHHHH
Q 010836 46 RSYCSGSGMKKFDFTDLTRPHT-WYPL-ARK-KVRKVILHVGPTNSGKTHQAL----SRLESSSSGIYCGPLRLLAWEVA 118 (499)
Q Consensus 46 ~~~l~~~~~~~~~~~~l~~~q~-~~~~-~~~-~~~~~vli~apTGsGKT~~~l----~~l~~~~~~l~l~P~r~La~q~~ 118 (499)
...+.|. ..+++-|+ +-.. +.. .+.++.++.|-||+|||.... +.+..++++.+..|+...+.+++
T Consensus 89 ~s~L~W~-------G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~ 161 (441)
T COG4098 89 KSVLQWK-------GTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELY 161 (441)
T ss_pred cceeeec-------cccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHH
Confidence 4456665 57888888 2221 111 368999999999999999854 34455678888899999999999
Q ss_pred HHHHhc--CCceeEeeCCeecccCCCceEEEce-eeccccCCccEEEEecCcccCCCCCChhHHHHHhccccc--cceEe
Q 010836 119 KRLNKA--NVSCDLITGQEREEVDGAKHRAVTV-EMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN--ELHLC 193 (499)
Q Consensus 119 ~~l~~~--g~~~~~~~g~~~~~~~~~~~iv~T~-e~~~~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~--~~~~~ 193 (499)
.|+++. +..+.+++|+...... ++++|+|+ +.+.+-..+|++||||+|..--.. ...+.-++-...+. ....+
T Consensus 162 ~Rlk~aF~~~~I~~Lyg~S~~~fr-~plvVaTtHQLlrFk~aFD~liIDEVDAFP~~~-d~~L~~Av~~ark~~g~~Iyl 239 (441)
T COG4098 162 PRLKQAFSNCDIDLLYGDSDSYFR-APLVVATTHQLLRFKQAFDLLIIDEVDAFPFSD-DQSLQYAVKKARKKEGATIYL 239 (441)
T ss_pred HHHHHhhccCCeeeEecCCchhcc-ccEEEEehHHHHHHHhhccEEEEeccccccccC-CHHHHHHHHHhhcccCceEEE
Confidence 999863 5788889998877766 88888888 666788899999999999874221 11111111111111 11223
Q ss_pred ecCCCchHHHHHHHHcC-----------CeEEEEeeeecCCCCcc------cccc-cccccc-CC-CCEEEEe-eHHHHH
Q 010836 194 GDPAAVPLIQQILQVTG-----------DDVKVQSYERLSPLVPL------NVPL-GSFSNI-QT-GDCIVTF-SRHAIY 252 (499)
Q Consensus 194 ~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~~~~~~------~~~l-~~l~~~-~~-~~~iv~~-s~~~~~ 252 (499)
.++.+..+.+++...-- ..+++-.+....+.... ...+ ..+... .. .-.++|+ +....+
T Consensus 240 TATp~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~~~e 319 (441)
T COG4098 240 TATPTKKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIETME 319 (441)
T ss_pred ecCChHHHHHHhhhCCeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchHHHH
Confidence 33334344444432111 01111111111110000 0011 112111 22 3456666 899999
Q ss_pred HHHHHH-HHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccccccCccccccCh
Q 010836 253 RLKKAI-ESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTV 330 (499)
Q Consensus 253 ~l~~~L-~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~ 330 (499)
+++..| .+.+...++.+|+. ...|.+..+.|++ |+.++|++|.+++||+++| |+..|.-.-.+ -.+.
T Consensus 320 q~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~--G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~-------vfTe 388 (441)
T COG4098 320 QVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRD--GKITLLITTTILERGVTFPNVDVFVLGAEHR-------VFTE 388 (441)
T ss_pred HHHHHHHhhCCccceeeeecc--CccHHHHHHHHHc--CceEEEEEeehhhcccccccceEEEecCCcc-------cccH
Confidence 999999 45566677889986 4568899999999 9999999999999999998 88766533321 3488
Q ss_pred hhHHhhhccCCCCCCCCCcEEEEEEcCCCH
Q 010836 331 PEVKQIAGRAGRYGSKFPVGEVTCLDSEDL 360 (499)
Q Consensus 331 ~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~ 360 (499)
+.++|.+||+||.-.. ..|.++.+.....
T Consensus 389 saLVQIaGRvGRs~~~-PtGdv~FFH~G~s 417 (441)
T COG4098 389 SALVQIAGRVGRSLER-PTGDVLFFHYGKS 417 (441)
T ss_pred HHHHHHhhhccCCCcC-CCCcEEEEeccch
Confidence 9999999999998653 6698888877654
No 98
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.89 E-value=3.5e-22 Score=204.70 Aligned_cols=265 Identities=20% Similarity=0.196 Sum_probs=181.3
Q ss_pred cCCCCCchhc-cchHHHhc--CCceEEEEccCCccHHHHHHHHHHcC-CCEEEEccHHHHHHHHHHHHHhc-CC--ceeE
Q 010836 58 DFTDLTRPHT-WYPLARKK--VRKVILHVGPTNSGKTHQALSRLESS-SSGIYCGPLRLLAWEVAKRLNKA-NV--SCDL 130 (499)
Q Consensus 58 ~~~~l~~~q~-~~~~~~~~--~~~~vli~apTGsGKT~~~l~~l~~~-~~~l~l~P~r~La~q~~~~l~~~-g~--~~~~ 130 (499)
....+++.|+ ++...... +.+..++++|||+|||.+++..+..- .+++||+|+++|+.|+++.+.+. +. .++.
T Consensus 33 ~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Qw~~~~~~~~~~~~~~g~ 112 (442)
T COG1061 33 FEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQWAEALKKFLLLNDEIGI 112 (442)
T ss_pred cCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHHHHHHHHHhcCCccccce
Confidence 3456899999 77776321 17789999999999999998877654 35999999999999999887754 33 4667
Q ss_pred eeCCeecccCCCceEEEceeeccc-------c-CCccEEEEecCcccCCCCCChh-HH-----HH-HhccccccceEeec
Q 010836 131 ITGQEREEVDGAKHRAVTVEMADV-------V-SDYDCAVIDEIQMLGCKTRGFS-FT-----RA-LLGICANELHLCGD 195 (499)
Q Consensus 131 ~~g~~~~~~~~~~~iv~T~e~~~~-------l-~~~~~iViDEah~~~~~~~g~~-~~-----~~-ll~l~~~~~~~~~~ 195 (499)
+.|+...... ..+.++|...+.. . +++++||+||||+.... .+. +. .. ++||+++..+.-+.
T Consensus 113 ~~~~~~~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~--~~~~~~~~~~~~~~~LGLTATp~R~D~~ 189 (442)
T COG1061 113 YGGGEKELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP--SYRRILELLSAAYPRLGLTATPEREDGG 189 (442)
T ss_pred ecCceeccCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH--HHHHHHHhhhcccceeeeccCceeecCC
Confidence 7776666544 5688888754422 2 47999999999999854 222 11 11 46666664432211
Q ss_pred CCCchHHHHHHHHcCC-----------------eEEEEeeee-cCC--------CCcc----------------------
Q 010836 196 PAAVPLIQQILQVTGD-----------------DVKVQSYER-LSP--------LVPL---------------------- 227 (499)
Q Consensus 196 ~~~~~~~~~l~~~~~~-----------------~~~~~~~~~-~~~--------~~~~---------------------- 227 (499)
....+....|. ++.+..... ... ....
T Consensus 190 -----~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (442)
T COG1061 190 -----RIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELLRARGTLRAENEARRIAI 264 (442)
T ss_pred -----chhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 11112222110 111111100 000 0000
Q ss_pred --cccc----cccccc-CCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecc
Q 010836 228 --NVPL----GSFSNI-QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD 299 (499)
Q Consensus 228 --~~~l----~~l~~~-~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~ 299 (499)
...+ ..+... +...+++|. +...+++++..+...+. +..+.|..+..+|..+++.|+. |.+++||++.
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~--~~~it~~t~~~eR~~il~~fr~--g~~~~lv~~~ 340 (442)
T COG1061 265 ASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI--VEAITGETPKEEREAILERFRT--GGIKVLVTVK 340 (442)
T ss_pred ccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc--eEEEECCCCHHHHHHHHHHHHc--CCCCEEEEee
Confidence 0000 001111 234566666 79999999999977665 8899999999999999999999 8899999999
Q ss_pred hhhcccccc-ccEEEEcccccccCccccccChhhHHhhhccCCCC
Q 010836 300 AIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343 (499)
Q Consensus 300 ~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~ 343 (499)
++..|+|+| ++.+|.... .-|...|.||+||.-|.
T Consensus 341 vl~EGvDiP~~~~~i~~~~---------t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 341 VLDEGVDIPDADVLIILRP---------TGSRRLFIQRLGRGLRP 376 (442)
T ss_pred eccceecCCCCcEEEEeCC---------CCcHHHHHHHhhhhccC
Confidence 999999998 999999877 34999999999999995
No 99
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.89 E-value=2.8e-23 Score=198.21 Aligned_cols=110 Identities=18% Similarity=0.318 Sum_probs=96.7
Q ss_pred cccccCCCCEEEEe-eHHHHHHHHHHHHHcCC--CeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccccc-c
Q 010836 233 SFSNIQTGDCIVTF-SRHAIYRLKKAIESRGK--HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-N 308 (499)
Q Consensus 233 ~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~--~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidi-p 308 (499)
.+.+....++|+|+ |+.+|+.+.+.+.+.+. ..++++||+..|.+|++.++.|+. +..+.|||||++++|+|| .
T Consensus 499 ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk--~dvkflictdvaargldi~g 576 (725)
T KOG0349|consen 499 AIRRHAMDKAIIFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKK--FDVKFLICTDVAARGLDITG 576 (725)
T ss_pred hhhhhccCceEEEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhh--cCeEEEEEehhhhccccccC
Confidence 34445667788888 99999999999998765 468999999999999999999999 999999999999999999 5
Q ss_pred ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEc
Q 010836 309 ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 356 (499)
Q Consensus 309 v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~ 356 (499)
+-++|+..+ |-+..+|+||+||+||...- |..+.+.
T Consensus 577 ~p~~invtl---------pd~k~nyvhrigrvgraerm---glaislv 612 (725)
T KOG0349|consen 577 LPFMINVTL---------PDDKTNYVHRIGRVGRAERM---GLAISLV 612 (725)
T ss_pred CceEEEEec---------Ccccchhhhhhhccchhhhc---ceeEEEe
Confidence 999999988 77999999999999999876 7665553
No 100
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.89 E-value=2.6e-21 Score=210.87 Aligned_cols=112 Identities=20% Similarity=0.248 Sum_probs=94.8
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEc
Q 010836 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFS 315 (499)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~ 315 (499)
...++|||+ ++..+..+++.|+...+.++..+||+|++.+|.++++.|+++++..+|||||+++++|+|++ +++||++
T Consensus 492 ~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInf 571 (956)
T PRK04914 492 RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLF 571 (956)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEe
Confidence 345667777 89999999999965544589999999999999999999998445699999999999999996 9999999
Q ss_pred ccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 316 ~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
|+ |+++..|.||+||+||.|.. +...++..+.++
T Consensus 572 Dl---------P~nP~~~eQRIGR~~RiGQ~-~~V~i~~~~~~~ 605 (956)
T PRK04914 572 DL---------PFNPDLLEQRIGRLDRIGQK-HDIQIHVPYLEG 605 (956)
T ss_pred cC---------CCCHHHHHHHhcccccCCCC-ceEEEEEccCCC
Confidence 99 88999999999999999997 333445554443
No 101
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.87 E-value=1.5e-22 Score=181.05 Aligned_cols=275 Identities=17% Similarity=0.184 Sum_probs=170.0
Q ss_pred CcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHH----HHHHHc-CC--CEEEEccHHH
Q 010836 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA----LSRLES-SS--SGIYCGPLRL 112 (499)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~----l~~l~~-~~--~~l~l~P~r~ 112 (499)
|-|++..++-.- ||..++++|. ++|.+ .-+-+++..|..|.|||.++ ++.+.. .+ .+++++.||+
T Consensus 49 lkpellraivdc-----gfehpsevqhecipqa--ilgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtre 121 (387)
T KOG0329|consen 49 LKPELLRAIVDC-----GFEHPSEVQHECIPQA--ILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRE 121 (387)
T ss_pred cCHHHHHHHHhc-----cCCCchHhhhhhhhHH--hhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHH
Confidence 667888888877 9999999999 99988 45999999999999999986 333322 23 4588899999
Q ss_pred HHHHHHHHHH---hc--CCceeEeeCCeecccC-----CCc-eEEEceeec-c-------ccCCccEEEEecCcccCCCC
Q 010836 113 LAWEVAKRLN---KA--NVSCDLITGQEREEVD-----GAK-HRAVTVEMA-D-------VVSDYDCAVIDEIQMLGCKT 173 (499)
Q Consensus 113 La~q~~~~l~---~~--g~~~~~~~g~~~~~~~-----~~~-~iv~T~e~~-~-------~l~~~~~iViDEah~~~~~~ 173 (499)
||-|+.+... ++ ++++.+..|+.....+ +++ +++.||..+ . .+++++++|+|||+.+...-
T Consensus 122 lafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~l 201 (387)
T KOG0329|consen 122 LAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQL 201 (387)
T ss_pred HHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHH
Confidence 9999976554 44 6888888887654322 345 456777333 2 35889999999999887421
Q ss_pred CChhHHHHHhccccccceEeecCCCc-hHHHHHHHHc-CCeEEE--EeeeecCCCCccccccccccccCCCCEEEEeeHH
Q 010836 174 RGFSFTRALLGICANELHLCGDPAAV-PLIQQILQVT-GDDVKV--QSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRH 249 (499)
Q Consensus 174 ~g~~~~~~ll~l~~~~~~~~~~~~~~-~~~~~l~~~~-~~~~~~--~~~~~~~~~~~~~~~l~~l~~~~~~~~iv~~s~~ 249 (499)
.=+.-..-+..+++..-+++..++++ +-++..+... .+..++ ....++ .+.-.......+++ .+
T Consensus 202 DMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KL-tLHGLqQ~YvkLke-----------~e 269 (387)
T KOG0329|consen 202 DMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKL-TLHGLQQYYVKLKE-----------NE 269 (387)
T ss_pred HHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhh-hhhhHHHHHHhhhh-----------hh
Confidence 11111233555555555544444333 4444444322 111111 110000 00000000000000 11
Q ss_pred HHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccccccCcccccc
Q 010836 250 AIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDL 328 (499)
Q Consensus 250 ~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~ 328 (499)
.-.++.+.|.......+.++--+... +. |.. + +|||+++++|+||. ++.|++||+ |-
T Consensus 270 KNrkl~dLLd~LeFNQVvIFvKsv~R------l~-f~k-----r-~vat~lfgrgmdiervNi~~NYdm---------p~ 327 (387)
T KOG0329|consen 270 KNRKLNDLLDVLEFNQVVIFVKSVQR------LS-FQK-----R-LVATDLFGRGMDIERVNIVFNYDM---------PE 327 (387)
T ss_pred hhhhhhhhhhhhhhcceeEeeehhhh------hh-hhh-----h-hHHhhhhccccCcccceeeeccCC---------CC
Confidence 11223333333333233333322211 11 432 3 99999999999995 999999999 77
Q ss_pred ChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 329 TVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 329 s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
+..+|+||.|||||.|.+ |..+.+.+.+
T Consensus 328 ~~DtYlHrv~rAgrfGtk---glaitfvs~e 355 (387)
T KOG0329|consen 328 DSDTYLHRVARAGRFGTK---GLAITFVSDE 355 (387)
T ss_pred CchHHHHHhhhhhccccc---cceeehhcch
Confidence 999999999999999998 8888776554
No 102
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.84 E-value=3.1e-19 Score=198.80 Aligned_cols=273 Identities=16% Similarity=0.207 Sum_probs=164.5
Q ss_pred CCCCchhc-cchHHHh---cCCceEEEEccCCccHHHHHHHH---HHc---CCCEEEEccHHHHHHHHHHHHHhcCCcee
Q 010836 60 TDLTRPHT-WYPLARK---KVRKVILHVGPTNSGKTHQALSR---LES---SSSGIYCGPLRLLAWEVAKRLNKANVSCD 129 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~---~~~~~vli~apTGsGKT~~~l~~---l~~---~~~~l~l~P~r~La~q~~~~l~~~g~~~~ 129 (499)
..+++.|. ++..+.. ..++..++++|||||||.+++.. +.+ .+++|+++|+++|+.|..+.|...+....
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~~~~ 491 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTKIEGD 491 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcccccc
Confidence 45899999 8766531 23567999999999999886432 332 36899999999999999999998754322
Q ss_pred E----eeC----CeecccCCCceEEEceeec-------------cccCCccEEEEecCcccCCCC-------C-------
Q 010836 130 L----ITG----QEREEVDGAKHRAVTVEMA-------------DVVSDYDCAVIDEIQMLGCKT-------R------- 174 (499)
Q Consensus 130 ~----~~g----~~~~~~~~~~~iv~T~e~~-------------~~l~~~~~iViDEah~~~~~~-------~------- 174 (499)
. +.+ .......+..++++|...+ .....+++|||||||+-...+ -
T Consensus 492 ~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~~~~~~ 571 (1123)
T PRK11448 492 QTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQFRDQLD 571 (1123)
T ss_pred cchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccchhccchhhh
Confidence 1 111 1112233578889988543 124678999999999852100 0
Q ss_pred -ChhHHHH-------HhccccccceEe----ecCCCchHHHHHHH--HcC---CeEEEEe-e-------ee------cC-
Q 010836 175 -GFSFTRA-------LLGICANELHLC----GDPAAVPLIQQILQ--VTG---DDVKVQS-Y-------ER------LS- 222 (499)
Q Consensus 175 -g~~~~~~-------ll~l~~~~~~~~----~~~~~~~~~~~l~~--~~~---~~~~~~~-~-------~~------~~- 222 (499)
...|... ++|+++++.+-. |.....-...+.+. .+- ..+.+.. . .. ..
T Consensus 572 ~~~~yr~iL~yFdA~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~~~~~e~~~~~~~ 651 (1123)
T PRK11448 572 YVSKYRRVLDYFDAVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIHFEKGEEVEVINT 651 (1123)
T ss_pred HHHHHHHHHhhcCccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccccccccchhhhcch
Confidence 0123332 244444443210 00000000011110 000 0000000 0 00 00
Q ss_pred ---CCC--cccc-------------------------ccccccccCCCCEEEEe-eHHHHHHHHHHHHHcC--------C
Q 010836 223 ---PLV--PLNV-------------------------PLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRG--------K 263 (499)
Q Consensus 223 ---~~~--~~~~-------------------------~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~--------~ 263 (499)
... ...+ ....+....+++.|||+ +++.++.+++.|.+.. .
T Consensus 652 ~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~ 731 (1123)
T PRK11448 652 QTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVED 731 (1123)
T ss_pred hhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCc
Confidence 000 0000 00001111235667777 8999999988886531 1
Q ss_pred CeEEEEcCCCCHHHHHHHHHHhcCCCCCc-cEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHhhhccCC
Q 010836 264 HLCSIVYGSLPPETRTRQATRFNDASSEF-DVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAG 341 (499)
Q Consensus 264 ~~v~~~hg~l~~~~R~~~~~~f~~~~g~~-~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRag 341 (499)
..+..+||+.+ ++..+++.|++ +.. +|+|+++++.+|+|+| |++||++.. +.|...|+|++||+.
T Consensus 732 ~~v~~itg~~~--~~~~li~~Fk~--~~~p~IlVsvdmL~TG~DvP~v~~vVf~rp---------vkS~~lf~QmIGRgt 798 (1123)
T PRK11448 732 DAVIKITGSID--KPDQLIRRFKN--ERLPNIVVTVDLLTTGIDVPSICNLVFLRR---------VRSRILYEQMLGRAT 798 (1123)
T ss_pred cceEEEeCCcc--chHHHHHHHhC--CCCCeEEEEecccccCCCcccccEEEEecC---------CCCHHHHHHHHhhhc
Confidence 24667898875 46789999998 665 7999999999999998 999999988 459999999999999
Q ss_pred CCCC
Q 010836 342 RYGS 345 (499)
Q Consensus 342 R~g~ 345 (499)
|..+
T Consensus 799 R~~~ 802 (1123)
T PRK11448 799 RLCP 802 (1123)
T ss_pred cCCc
Confidence 9865
No 103
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.83 E-value=3.6e-19 Score=187.56 Aligned_cols=342 Identities=15% Similarity=0.127 Sum_probs=200.1
Q ss_pred CCCCCchhc-cchHHHhc--CCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHh-cCCceeE
Q 010836 59 FTDLTRPHT-WYPLARKK--VRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNK-ANVSCDL 130 (499)
Q Consensus 59 ~~~l~~~q~-~~~~~~~~--~~~~vli~apTGsGKT~~~l~~l----~~~~~~l~l~P~r~La~q~~~~l~~-~g~~~~~ 130 (499)
...++..|+ ++..+... ..+..++.|.||||||.+|++.+ .+++++|+++|-.+|..|+.++|+. +|.++.+
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~v 275 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFGAKVAV 275 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhCCChhh
Confidence 356888888 88888654 25889999999999999997655 4567899999999999999999984 7888888
Q ss_pred eeCCeecc---------cCCCceEEEceeec--cccCCccEEEEecCcccCCCC----CChhHHHHHhccccccceEeec
Q 010836 131 ITGQEREE---------VDGAKHRAVTVEMA--DVVSDYDCAVIDEIQMLGCKT----RGFSFTRALLGICANELHLCGD 195 (499)
Q Consensus 131 ~~g~~~~~---------~~~~~~iv~T~e~~--~~l~~~~~iViDEah~~~~~~----~g~~~~~~ll~l~~~~~~~~~~ 195 (499)
+++.-... ..+..-||++++.. .-+.++++|||||.|.-+..+ +.++..-+++.-....+.++-.
T Consensus 276 lHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLg 355 (730)
T COG1198 276 LHSGLSPGERYRVWRRARRGEARVVIGTRSALFLPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLG 355 (730)
T ss_pred hcccCChHHHHHHHHHHhcCCceEEEEechhhcCchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEe
Confidence 88753321 22444455555444 446999999999999876322 2233333333222223333222
Q ss_pred CCCchHHHHHHHH-cCCeEEEEeeeecC---------------CCC----ccccccccccc-c-CCCCEEEEeeH-----
Q 010836 196 PAAVPLIQQILQV-TGDDVKVQSYERLS---------------PLV----PLNVPLGSFSN-I-QTGDCIVTFSR----- 248 (499)
Q Consensus 196 ~~~~~~~~~l~~~-~~~~~~~~~~~~~~---------------~~~----~~~~~l~~l~~-~-~~~~~iv~~s~----- 248 (499)
+++.. ++.+... .|....+.-..|.. +.. .....+..+.+ + .+.+.++|+.+
T Consensus 356 SATPS-LES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~~geQ~llflnRRGys~ 434 (730)
T COG1198 356 SATPS-LESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLERGEQVLLFLNRRGYAP 434 (730)
T ss_pred cCCCC-HHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHhcCCeEEEEEccCCccc
Confidence 22322 2222222 12111110000000 000 00000000100 0 11112222211
Q ss_pred --------------------------------------------------------HHHHHHHHHHHHcC-CCeEEEEcC
Q 010836 249 --------------------------------------------------------HAIYRLKKAIESRG-KHLCSIVYG 271 (499)
Q Consensus 249 --------------------------------------------------------~~~~~l~~~L~~~~-~~~v~~~hg 271 (499)
..++++++.|.+.. ..++..+-+
T Consensus 435 ~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~ 514 (730)
T COG1198 435 LLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDS 514 (730)
T ss_pred eeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEcc
Confidence 11555666665543 446777777
Q ss_pred CCCHHH--HHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEE--EcccccccCc-cccccChhhHHhhhccCCCCCC
Q 010836 272 SLPPET--RTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRII--FSTMKKFDGV-ELRDLTVPEVKQIAGRAGRYGS 345 (499)
Q Consensus 272 ~l~~~~--R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI--~~~~~~~~~~-~~~p~s~~~~~Qr~GRagR~g~ 345 (499)
+..... -...++.|.+ |+.+|||.|++++.|.|+| +..|. +.|..-+.++ +........+.|-+|||||.+.
T Consensus 515 Dtt~~k~~~~~~l~~~~~--ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~~ 592 (730)
T COG1198 515 DTTRRKGALEDLLDQFAN--GEADILIGTQMIAKGHDFPNVTLVGVLDADTGLGSPDFRASERTFQLLMQVAGRAGRAGK 592 (730)
T ss_pred ccccchhhHHHHHHHHhC--CCCCeeecchhhhcCCCcccceEEEEEechhhhcCCCcchHHHHHHHHHHHHhhhccCCC
Confidence 765533 2467889999 9999999999999999997 76654 5555556665 5666788999999999999966
Q ss_pred CCCcEE-EEEEcCCCHHHHHhhhCCCCchh--------hhcCCCChHHHHHHHHhcCCCccHHHHHHHHH
Q 010836 346 KFPVGE-VTCLDSEDLPLLHKSLLEPSPML--------ESAGLFPNFDLIYMYSRLHPDSSLYGILEHFL 406 (499)
Q Consensus 346 ~~~~g~-~~~~~~~~~~~~~~~~~~~~~~i--------~~~~l~~~~~~l~~~~~~~~~~~l~~~l~~~~ 406 (499)
. |. ++..+..+.+.++.........+ ....+.|...++.-...........+.+..+.
T Consensus 593 ~---G~VvIQT~~P~hp~i~~~~~~dy~~F~~~El~~Rk~~~~PPf~~l~~v~~~~~~~~~~~~~~~~~~ 659 (730)
T COG1198 593 P---GEVVIQTYNPDHPAIQALKRGDYEAFYEQELAERKELGLPPFSRLAAVIASAKNEEKALEFARALR 659 (730)
T ss_pred C---CeEEEEeCCCCcHHHHHHHhcCHHHHHHHHHHHHHhcCCCChhhheeeEecCCCHHHHHHHHHHHH
Confidence 5 44 46666667666666655544332 23344444433333233333444444444444
No 104
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.83 E-value=7.1e-20 Score=190.16 Aligned_cols=111 Identities=23% Similarity=0.355 Sum_probs=91.0
Q ss_pred eEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccccccccEEEEcccccccCccccccChhhHHhhhccCCCCC
Q 010836 265 LCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYG 344 (499)
Q Consensus 265 ~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidipv~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g 344 (499)
++.+||++|+...|..++=.|+. |...||+||.+++-|||+|++.|++.+-+- .+++-.|.|++|||||.|
T Consensus 964 GiG~HHaglNr~yR~~VEvLFR~--g~L~VlfaT~TLsLGiNMPCrTVvF~gDsL-------QL~plny~QmaGRAGRRG 1034 (1330)
T KOG0949|consen 964 GIGVHHAGLNRKYRSLVEVLFRQ--GHLQVLFATETLSLGINMPCRTVVFAGDSL-------QLDPLNYKQMAGRAGRRG 1034 (1330)
T ss_pred cccccccccchHHHHHHHHHhhc--CceEEEEEeeehhcccCCCceeEEEecccc-------ccCchhHHhhhccccccc
Confidence 48999999999999999999999 999999999999999999999999887643 678899999999999999
Q ss_pred CCCCcEEEEEEcCCCHHHHHhhhCCCCchhhhcCCCChHHHH
Q 010836 345 SKFPVGEVTCLDSEDLPLLHKSLLEPSPMLESAGLFPNFDLI 386 (499)
Q Consensus 345 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~l 386 (499)
-+ ..|.|+.+.-. ...+.+++....++++.+.-......+
T Consensus 1035 FD-~lGnV~FmgiP-~~kv~rLlts~L~diqG~~p~T~~~~l 1074 (1330)
T KOG0949|consen 1035 FD-TLGNVVFMGIP-RQKVQRLLTSLLPDIQGAYPYTNTSFL 1074 (1330)
T ss_pred cc-cccceEEEeCc-HHHHHHHHHHhhhcccCCCcchhhHHH
Confidence 86 66877766543 346677787777777755443333333
No 105
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.80 E-value=1.2e-18 Score=189.12 Aligned_cols=283 Identities=17% Similarity=0.194 Sum_probs=169.3
Q ss_pred Cchhc-cchHHHhc-CCc-eEEEEccCCccHHHHHHHHH----Hc----CCCEEEEccHHHHHHHHHHHHHhcC---Cce
Q 010836 63 TRPHT-WYPLARKK-VRK-VILHVGPTNSGKTHQALSRL----ES----SSSGIYCGPLRLLAWEVAKRLNKAN---VSC 128 (499)
Q Consensus 63 ~~~q~-~~~~~~~~-~~~-~vli~apTGsGKT~~~l~~l----~~----~~~~l~l~P~r~La~q~~~~l~~~g---~~~ 128 (499)
.+.|. ++..+... ... .+++.||||+|||++++.+. .+ ..+++++.|++.+.+++++++.+.. ...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~ 276 (733)
T COG1203 197 YELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSVI 276 (733)
T ss_pred hHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccccc
Confidence 44555 55544333 345 89999999999999964332 22 4578999999999999999998631 111
Q ss_pred eE-eeCCeecccCCC--------------------ceEEEce-eeccc-------c----CCccEEEEecCcccCCCCCC
Q 010836 129 DL-ITGQEREEVDGA--------------------KHRAVTV-EMADV-------V----SDYDCAVIDEIQMLGCKTRG 175 (499)
Q Consensus 129 ~~-~~g~~~~~~~~~--------------------~~iv~T~-e~~~~-------l----~~~~~iViDEah~~~~~~~g 175 (499)
.. .+|......... ..+++|+ ..+.. . -..+++|+||+|.+.+.. .
T Consensus 277 ~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~-~ 355 (733)
T COG1203 277 GKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADET-M 355 (733)
T ss_pred cccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccc-h
Confidence 12 233222111111 1112222 11110 0 235799999999998652 2
Q ss_pred hhHHHHHhc-cccccceEeecCCCch--HHHHHHHHcCCeEEEEee------------eecCCCCcccc----cc-cccc
Q 010836 176 FSFTRALLG-ICANELHLCGDPAAVP--LIQQILQVTGDDVKVQSY------------ERLSPLVPLNV----PL-GSFS 235 (499)
Q Consensus 176 ~~~~~~ll~-l~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~------------~~~~~~~~~~~----~l-~~l~ 235 (499)
......++. +......++-+++|.| +.+.+....+....+... .+......... .. ....
T Consensus 356 ~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 435 (733)
T COG1203 356 LAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISE 435 (733)
T ss_pred HHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchh
Confidence 222222222 2222333334444443 333333333322111111 00000111111 01 1111
Q ss_pred cc--CCCCEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcC--CCCCccEEEecchhhccccccccE
Q 010836 236 NI--QTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFND--ASSEFDVLVASDAIGMGLNLNISR 311 (499)
Q Consensus 236 ~~--~~~~~iv~~s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~--~~g~~~iLvaT~~~~~Gidipv~~ 311 (499)
.. ..+..||++|++.|.++++.|+..+. .++.+||.+...+|.+.++.+.+ ..+...|+|||++++.|+|++.+.
T Consensus 436 ~~~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~-~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDidfd~ 514 (733)
T COG1203 436 EVKEGKKVLVIVNTVDRAIELYEKLKEKGP-KVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDIDFDV 514 (733)
T ss_pred hhccCCcEEEEEecHHHHHHHHHHHHhcCC-CEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccccCe
Confidence 12 23345667799999999999999888 89999999999999888875442 126778999999999999999999
Q ss_pred EEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 312 VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
+|-. +.+..+.+||+||++|.|.. ..|.++.....+
T Consensus 515 mITe-----------~aPidSLIQR~GRv~R~g~~-~~~~~~v~~~~~ 550 (733)
T COG1203 515 LITE-----------LAPIDSLIQRAGRVNRHGKK-ENGKIYVYNDEE 550 (733)
T ss_pred eeec-----------CCCHHHHHHHHHHHhhcccc-cCCceeEeeccc
Confidence 9854 44788999999999999943 337776665544
No 106
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=5.1e-18 Score=180.63 Aligned_cols=92 Identities=23% Similarity=0.225 Sum_probs=77.8
Q ss_pred CEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccccc---------
Q 010836 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS--------- 310 (499)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidipv~--------- 310 (499)
.++|++ |...++.+++.|.+.+. ...++||++...+|..+.+.|+. | .|+||||+++||+||-..
T Consensus 446 PVLVgt~Sie~sE~ls~~L~~~gi-~h~vLnak~~q~Ea~iia~Ag~~--G--~VtIATNmAGRGtDI~Lggn~~~~~~~ 520 (896)
T PRK13104 446 PVLVGTVSIEASEFLSQLLKKENI-KHQVLNAKFHEKEAQIIAEAGRP--G--AVTIATNMAGRGTDIVLGGSLAADLAN 520 (896)
T ss_pred CEEEEeCcHHHHHHHHHHHHHcCC-CeEeecCCCChHHHHHHHhCCCC--C--cEEEeccCccCCcceecCCchhhhhhc
Confidence 356666 89999999999999887 89999999999999999999999 7 499999999999999643
Q ss_pred ------------------------------EEEEcccccccCccccccChhhHHhhhccCCCCCCC
Q 010836 311 ------------------------------RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (499)
Q Consensus 311 ------------------------------~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~ 346 (499)
+||-. .++-|..-=.|-.|||||.|..
T Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgT---------erhesrRID~QLrGRaGRQGDP 577 (896)
T PRK13104 521 LPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGS---------ERHESRRIDNQLRGRAGRQGDP 577 (896)
T ss_pred cccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEee---------ccCchHHHHHHhccccccCCCC
Confidence 23332 2355777788999999999987
No 107
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=2.5e-18 Score=182.11 Aligned_cols=102 Identities=17% Similarity=0.198 Sum_probs=87.2
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc----cc---
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN----IS--- 310 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip----v~--- 310 (499)
...++|++ |+..++.+++.|.+.+. ....+||++...++..+.+.++. |. |+|||++++||.||+ |.
T Consensus 440 g~pvLI~t~si~~se~ls~~L~~~gi-~~~~Lna~~~~~Ea~ii~~ag~~--g~--VtIATnmAGRGtDI~l~~~V~~~G 514 (796)
T PRK12906 440 GQPVLVGTVAIESSERLSHLLDEAGI-PHAVLNAKNHAKEAEIIMNAGQR--GA--VTIATNMAGRGTDIKLGPGVKELG 514 (796)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHCCC-CeeEecCCcHHHHHHHHHhcCCC--ce--EEEEeccccCCCCCCCCcchhhhC
Confidence 34466666 89999999999999887 89999999998888888888887 65 999999999999993 77
Q ss_pred --EEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcC
Q 010836 311 --RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (499)
Q Consensus 311 --~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~ 357 (499)
+||+++. |.|...+.|+.||+||.|.. |.+..+.+
T Consensus 515 GLhVI~te~---------pes~ri~~Ql~GRtGRqG~~---G~s~~~~s 551 (796)
T PRK12906 515 GLAVIGTER---------HESRRIDNQLRGRSGRQGDP---GSSRFYLS 551 (796)
T ss_pred CcEEEeeec---------CCcHHHHHHHhhhhccCCCC---cceEEEEe
Confidence 9999988 77999999999999999998 66544433
No 108
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.78 E-value=8.3e-18 Score=178.85 Aligned_cols=93 Identities=19% Similarity=0.239 Sum_probs=79.1
Q ss_pred CCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccccc--------
Q 010836 240 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS-------- 310 (499)
Q Consensus 240 ~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidipv~-------- 310 (499)
..++||+ |...++.+++.|.+.+. ....+||. +.+|...+..|.. +...|+||||+++||+||+..
T Consensus 431 rpVLIft~Si~~se~Ls~~L~~~gi-~~~vLnak--q~eREa~Iia~Ag--~~g~VtIATNmAGRGtDI~LgGn~~~~~~ 505 (830)
T PRK12904 431 QPVLVGTVSIEKSELLSKLLKKAGI-PHNVLNAK--NHEREAEIIAQAG--RPGAVTIATNMAGRGTDIKLGGNPEMLAA 505 (830)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHCCC-ceEeccCc--hHHHHHHHHHhcC--CCceEEEecccccCCcCccCCCchhhhhh
Confidence 3466666 89999999999999877 89999996 7789999999999 888999999999999999865
Q ss_pred -------------------------------EEEEcccccccCccccccChhhHHhhhccCCCCCCC
Q 010836 311 -------------------------------RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (499)
Q Consensus 311 -------------------------------~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~ 346 (499)
+||-.. ++-|..-=.|-.|||||.|.+
T Consensus 506 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTe---------rhesrRid~QlrGRagRQGdp 563 (830)
T PRK12904 506 ALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTE---------RHESRRIDNQLRGRSGRQGDP 563 (830)
T ss_pred hhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecc---------cCchHHHHHHhhcccccCCCC
Confidence 344332 366888889999999999987
No 109
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.72 E-value=1.4e-16 Score=174.71 Aligned_cols=108 Identities=23% Similarity=0.246 Sum_probs=88.3
Q ss_pred CEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCC-CCccEEEecchhhcccccc-ccEEEEccc
Q 010836 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDAS-SEFDVLVASDAIGMGLNLN-ISRIIFSTM 317 (499)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~-g~~~iLvaT~~~~~Gidip-v~~VI~~~~ 317 (499)
++|||. .......+.+.|...+. ..+.++|+++.++|..+++.|++++ +...+|++|.+++.|||+. +++||+++.
T Consensus 489 KVLIFSQft~~LdiLed~L~~~g~-~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIiyD~ 567 (1033)
T PLN03142 489 RVLIFSQMTRLLDILEDYLMYRGY-QYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDS 567 (1033)
T ss_pred eEEeehhHHHHHHHHHHHHHHcCC-cEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEEeCC
Confidence 344444 46667777888877666 8999999999999999999998732 3456899999999999995 999999999
Q ss_pred ccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 318 KKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 318 ~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
++++....|++||+.|.|+. ..-.||.+...+
T Consensus 568 ---------dWNP~~d~QAidRaHRIGQk-k~V~VyRLIt~g 599 (1033)
T PLN03142 568 ---------DWNPQVDLQAQDRAHRIGQK-KEVQVFRFCTEY 599 (1033)
T ss_pred ---------CCChHHHHHHHHHhhhcCCC-ceEEEEEEEeCC
Confidence 88999999999999999986 445566665554
No 110
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.71 E-value=5.8e-16 Score=164.61 Aligned_cols=92 Identities=18% Similarity=0.195 Sum_probs=77.6
Q ss_pred CEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccccc---------
Q 010836 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS--------- 310 (499)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidipv~--------- 310 (499)
.++|++ |...++.+++.|.+.+. ...++|++....++..+.+.|+. |. |+||||+++||.||-..
T Consensus 451 pVLV~t~sv~~se~ls~~L~~~gi-~~~vLnak~~~~Ea~ii~~Ag~~--G~--VtIATnmAGRGTDIkLggn~~~~~~~ 525 (908)
T PRK13107 451 PVLVGTVSIEQSELLARLMVKEKI-PHEVLNAKFHEREAEIVAQAGRT--GA--VTIATNMAGRGTDIVLGGNWNMEIEA 525 (908)
T ss_pred CEEEEeCcHHHHHHHHHHHHHCCC-CeEeccCcccHHHHHHHHhCCCC--Cc--EEEecCCcCCCcceecCCchHHhhhh
Confidence 355555 89999999999998877 88999999999999999999999 76 99999999999999643
Q ss_pred -----------------------------EEEEcccccccCccccccChhhHHhhhccCCCCCCC
Q 010836 311 -----------------------------RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (499)
Q Consensus 311 -----------------------------~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~ 346 (499)
+||-.. ++-|..-=.|-.|||||.|.+
T Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTe---------rheSrRID~QLrGRaGRQGDP 581 (908)
T PRK13107 526 LENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTE---------RHESRRIDNQLRGRAGRQGDA 581 (908)
T ss_pred hcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecc---------cCchHHHHhhhhcccccCCCC
Confidence 344332 255777778999999999987
No 111
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.69 E-value=2.9e-15 Score=159.59 Aligned_cols=112 Identities=14% Similarity=0.074 Sum_probs=87.6
Q ss_pred ccCCCC---Cchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHh----c
Q 010836 57 FDFTDL---TRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNK----A 124 (499)
Q Consensus 57 ~~~~~l---~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~r~La~q~~~~l~~----~ 124 (499)
.|+..+ +++|. .+|.+ ..+++++..++||+|||++|..+++ .+..+++++|+++||.|.++.+.+ +
T Consensus 85 ~G~~~p~~~tp~qvQ~I~~i--~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~l 162 (970)
T PRK12899 85 SGYHQQWDMVPYDVQILGAI--AMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWL 162 (970)
T ss_pred ccccCCCCCChHHHHHhhhh--hcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhc
Confidence 367776 99999 99988 5588899999999999999854443 445688999999999999998875 4
Q ss_pred CCceeEeeCCeecc----cCCCceEEEceeec--ccc--------------CCccEEEEecCcccC
Q 010836 125 NVSCDLITGQEREE----VDGAKHRAVTVEMA--DVV--------------SDYDCAVIDEIQMLG 170 (499)
Q Consensus 125 g~~~~~~~g~~~~~----~~~~~~iv~T~e~~--~~l--------------~~~~~iViDEah~~~ 170 (499)
|++++.+.|+.... .-.++++++||..+ +++ +.+.++||||||.++
T Consensus 163 GLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmL 228 (970)
T PRK12899 163 GLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSIL 228 (970)
T ss_pred CCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhh
Confidence 78888888764332 12578999999443 432 356899999999986
No 112
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.69 E-value=2.7e-16 Score=145.35 Aligned_cols=159 Identities=16% Similarity=0.087 Sum_probs=112.6
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----Hc-----CCCEEEEcc
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ES-----SSSGIYCGP 109 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l----~~-----~~~~l~l~P 109 (499)
.+++.+.+.+.+. ++..+++.|. +++.+ .+++++++++|||+|||++++.++ .. +++++|++|
T Consensus 5 ~~~~~i~~~l~~~-----~~~~~~~~Q~~~~~~~--~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p 77 (203)
T cd00268 5 GLSPELLRGIYAL-----GFEKPTPIQARAIPPL--LSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAP 77 (203)
T ss_pred CCCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--hcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcC
Confidence 3667788888877 8999999999 99988 459999999999999999964443 22 247899999
Q ss_pred HHHHHHHHHHHHHhc----CCceeEeeCCeecc------cCCCceEEEceeecc--------ccCCccEEEEecCcccCC
Q 010836 110 LRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 110 ~r~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~ 171 (499)
+++|+.|+.+.+.++ ++.+..++|+.... ..+.+++++|++.+. .+.+++++|+||+|++.+
T Consensus 78 ~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~ 157 (203)
T cd00268 78 TRELALQIAEVARKLGKHTNLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD 157 (203)
T ss_pred CHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc
Confidence 999999999888765 56777777754321 126789999986542 347789999999999885
Q ss_pred CCCChhHHHHHhccccccceEeecCCCc-hHHHHHH
Q 010836 172 KTRGFSFTRALLGICANELHLCGDPAAV-PLIQQIL 206 (499)
Q Consensus 172 ~~~g~~~~~~ll~l~~~~~~~~~~~~~~-~~~~~l~ 206 (499)
..++......+..+. ...+++..+++. +.+..++
T Consensus 158 ~~~~~~~~~~~~~l~-~~~~~~~~SAT~~~~~~~~~ 192 (203)
T cd00268 158 MGFEDQIREILKLLP-KDRQTLLFSATMPKEVRDLA 192 (203)
T ss_pred cChHHHHHHHHHhCC-cccEEEEEeccCCHHHHHHH
Confidence 533333333333333 344555555554 3344443
No 113
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.66 E-value=2.1e-15 Score=160.79 Aligned_cols=302 Identities=19% Similarity=0.233 Sum_probs=214.0
Q ss_pred CCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHcC---CCEEEEccHHHHHHHHHHHHHh-----cCCcee
Q 010836 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLESS---SSGIYCGPLRLLAWEVAKRLNK-----ANVSCD 129 (499)
Q Consensus 59 ~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~~---~~~l~l~P~r~La~q~~~~l~~-----~g~~~~ 129 (499)
|.+..++|. .++... ..+.++++.+|+|||||.++-.+++.. ++++|+.|.-+.+..++..+.+ .|..+.
T Consensus 1141 f~~~n~iqtqVf~~~y-~~nd~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~ 1219 (1674)
T KOG0951|consen 1141 FQDFNPIQTQVFTSLY-NTNDNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIV 1219 (1674)
T ss_pred ccccCCceEEEEeeee-cccceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEE
Confidence 555688998 888765 578999999999999999997777653 5889999999999998887764 377788
Q ss_pred EeeCCeecc---cCCCceEEEceeecccc---CCccEEEEecCcccCCCCCChhH-----HHHHhccccccceEeecCCC
Q 010836 130 LITGQEREE---VDGAKHRAVTVEMADVV---SDYDCAVIDEIQMLGCKTRGFSF-----TRALLGICANELHLCGDPAA 198 (499)
Q Consensus 130 ~~~g~~~~~---~~~~~~iv~T~e~~~~l---~~~~~iViDEah~~~~~~~g~~~-----~~~ll~l~~~~~~~~~~~~~ 198 (499)
.++|+.... ....+++++||+.++.+ ..+++.|.||.|++++ ..|..+ ++.+....-+.+++++.+..
T Consensus 1220 ~l~ge~s~~lkl~~~~~vii~tpe~~d~lq~iQ~v~l~i~d~lh~igg-~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~ 1298 (1674)
T KOG0951|consen 1220 KLTGETSLDLKLLQKGQVIISTPEQWDLLQSIQQVDLFIVDELHLIGG-VYGAVYEVICSMRYIASQLEKKIRVVALSSS 1298 (1674)
T ss_pred ecCCccccchHHhhhcceEEechhHHHHHhhhhhcceEeeehhhhhcc-cCCceEEEEeeHHHHHHHHHhheeEEEeehh
Confidence 888876543 34688999999888765 7799999999999983 344432 23333333456777777776
Q ss_pred chHHHHHHHHcCC-eEEEEeeeecCCCCcccccc-----------------ccccc--cCCCCEEEEe-eHHHHHHHHHH
Q 010836 199 VPLIQQILQVTGD-DVKVQSYERLSPLVPLNVPL-----------------GSFSN--IQTGDCIVTF-SRHAIYRLKKA 257 (499)
Q Consensus 199 ~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~l-----------------~~l~~--~~~~~~iv~~-s~~~~~~l~~~ 257 (499)
+.+.++++..... .+.+....|+.|+......+ ..+.+ ..++..++|. +++.+..++..
T Consensus 1299 lana~d~ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~ 1378 (1674)
T KOG0951|consen 1299 LANARDLIGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVD 1378 (1674)
T ss_pred hccchhhccccccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhc
Confidence 6666666433221 22333334555544321111 11111 1345566666 78887665543
Q ss_pred HHHc-----------------------CCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccccccccEEEE
Q 010836 258 IESR-----------------------GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIF 314 (499)
Q Consensus 258 L~~~-----------------------~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidipv~~VI~ 314 (499)
+-.. -...+. |-+++..+...+-..|.. |.+.|+|...- -.|+-.-.+.||.
T Consensus 1379 ~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~--g~i~v~v~s~~-~~~~~~~~~lVvv 1453 (1674)
T KOG0951|consen 1379 LVTFSHADEPDYLLSELEECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEA--GAIQVCVMSRD-CYGTKLKAHLVVV 1453 (1674)
T ss_pred cchhhccCcHHHHHHHHhcchHhhhhccccccc--ccccCcchHHHHHHHHhc--CcEEEEEEEcc-cccccccceEEEE
Confidence 3221 112233 889999888889999999 99999988877 7888888899999
Q ss_pred cccccccCc--cccccChhhHHhhhccCCCCCCCCCcEEEEEEcC-CCHHHHHhhhCCCCch
Q 010836 315 STMKKFDGV--ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS-EDLPLLHKSLLEPSPM 373 (499)
Q Consensus 315 ~~~~~~~~~--~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~ 373 (499)
.+...|||. ...+.+.++..|+.|+|.|. |.|+.++. .+..++++++.++.|-
T Consensus 1454 mgt~~ydg~e~~~~~y~i~~ll~m~G~a~~~------~k~vi~~~~~~k~yykkfl~e~lPv 1509 (1674)
T KOG0951|consen 1454 MGTQYYDGKEHSYEDYPIAELLQMVGLASGA------GKCVIMCHTPKKEYYKKFLYEPLPV 1509 (1674)
T ss_pred ecceeecccccccccCchhHHHHHhhhhcCC------ccEEEEecCchHHHHHHhccCcCch
Confidence 999999998 57778999999999999984 45555544 3447888888887763
No 114
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.64 E-value=5e-14 Score=139.26 Aligned_cols=119 Identities=21% Similarity=0.206 Sum_probs=100.2
Q ss_pred CEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccc
Q 010836 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMK 318 (499)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~ 318 (499)
.++|.. |++.++.|.++|.+.+. ++.++|+++..-+|.++++..+. |.++|||.-+.+-.|+|+| |..|.+.|..
T Consensus 448 RvLVTtLTKkmAEdLT~Yl~e~gi-kv~YlHSdidTlER~eIirdLR~--G~~DvLVGINLLREGLDiPEVsLVAIlDAD 524 (663)
T COG0556 448 RVLVTTLTKKMAEDLTEYLKELGI-KVRYLHSDIDTLERVEIIRDLRL--GEFDVLVGINLLREGLDLPEVSLVAILDAD 524 (663)
T ss_pred eEEEEeehHHHHHHHHHHHHhcCc-eEEeeeccchHHHHHHHHHHHhc--CCccEEEeehhhhccCCCcceeEEEEeecC
Confidence 344444 89999999999999998 99999999999999999999999 9999999999999999999 9999988876
Q ss_pred cccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCHHHHHhhhCCC
Q 010836 319 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLLEP 370 (499)
Q Consensus 319 ~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~~~~~~~~~~~ 370 (499)
|- .-..|-.+++|-+|||+|.-. |.|+.+.+.-.+.+++.++..
T Consensus 525 Ke----GFLRse~SLIQtIGRAARN~~----GkvIlYAD~iT~sM~~Ai~ET 568 (663)
T COG0556 525 KE----GFLRSERSLIQTIGRAARNVN----GKVILYADKITDSMQKAIDET 568 (663)
T ss_pred cc----ccccccchHHHHHHHHhhccC----CeEEEEchhhhHHHHHHHHHH
Confidence 51 113588899999999999887 888877765445666655443
No 115
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.64 E-value=7.2e-16 Score=119.18 Aligned_cols=76 Identities=34% Similarity=0.562 Sum_probs=71.0
Q ss_pred HHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHh
Q 010836 257 AIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQ 335 (499)
Q Consensus 257 ~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Q 335 (499)
.|+..+. .+..+||++++++|..+++.|++ +..+|||||+++++|+|+| +++||+++. |.+..+|.|
T Consensus 2 ~L~~~~~-~~~~i~~~~~~~~r~~~~~~f~~--~~~~vli~t~~~~~Gid~~~~~~vi~~~~---------~~~~~~~~Q 69 (78)
T PF00271_consen 2 FLEKKGI-KVAIIHGDMSQKERQEILKKFNS--GEIRVLIATDILGEGIDLPDASHVIFYDP---------PWSPEEYIQ 69 (78)
T ss_dssp HHHHTTS-SEEEESTTSHHHHHHHHHHHHHT--TSSSEEEESCGGTTSSTSTTESEEEESSS---------ESSHHHHHH
T ss_pred ChHHCCC-cEEEEECCCCHHHHHHHHHHhhc--cCceEEEeecccccccccccccccccccc---------CCCHHHHHH
Confidence 4666666 99999999999999999999999 8899999999999999997 999999999 779999999
Q ss_pred hhccCCCCC
Q 010836 336 IAGRAGRYG 344 (499)
Q Consensus 336 r~GRagR~g 344 (499)
++||+||.|
T Consensus 70 ~~GR~~R~g 78 (78)
T PF00271_consen 70 RIGRAGRIG 78 (78)
T ss_dssp HHTTSSTTT
T ss_pred HhhcCCCCC
Confidence 999999986
No 116
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.63 E-value=7.1e-15 Score=154.91 Aligned_cols=248 Identities=19% Similarity=0.224 Sum_probs=162.4
Q ss_pred CCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHH-HHH---HcCCCEEEEccHHHHHHHHHHHHHhcC-----Ccee
Q 010836 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL-SRL---ESSSSGIYCGPLRLLAWEVAKRLNKAN-----VSCD 129 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l-~~l---~~~~~~l~l~P~r~La~q~~~~l~~~g-----~~~~ 129 (499)
..|...|. |.-.+ ..|+..-+.||||.|||+-.+ ..+ .++++++|++||+.|+.|+++++.+++ ..+.
T Consensus 81 ~~~ws~QR~WakR~--~rg~SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~ 158 (1187)
T COG1110 81 FRPWSAQRVWAKRL--VRGKSFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVL 158 (1187)
T ss_pred CCchHHHHHHHHHH--HcCCceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCccee
Confidence 38999999 77665 679999999999999999842 222 345789999999999999999999753 3333
Q ss_pred E-eeCCeec----------ccCCCceEEEceeecc----cc--CCccEEEEecCcccCCCCCChhHHHHHhccccc----
Q 010836 130 L-ITGQERE----------EVDGAKHRAVTVEMAD----VV--SDYDCAVIDEIQMLGCKTRGFSFTRALLGICAN---- 188 (499)
Q Consensus 130 ~-~~g~~~~----------~~~~~~~iv~T~e~~~----~l--~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~---- 188 (499)
+ +||.... ...+.+++++|...+. .+ .+++++++|.+|.+.-..+.-.....++|++..
T Consensus 159 ~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~L~~~kFdfifVDDVDA~LkaskNvDriL~LlGf~eE~i~~ 238 (1187)
T COG1110 159 VVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEELSKLKFDFIFVDDVDAILKASKNVDRLLRLLGFSEEVIES 238 (1187)
T ss_pred eeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHHhcccCCCEEEEccHHHHHhccccHHHHHHHcCCCHHHHHH
Confidence 3 4554211 1225677777775552 33 379999999999887443222222222232211
Q ss_pred --------------------------------------cceEeecCCC------chHHHHHHHHcCCe------EEEEee
Q 010836 189 --------------------------------------ELHLCGDPAA------VPLIQQILQVTGDD------VKVQSY 218 (499)
Q Consensus 189 --------------------------------------~~~~~~~~~~------~~~~~~l~~~~~~~------~~~~~~ 218 (499)
.+.++.+.+. ..+.+.++...... -.+..|
T Consensus 239 a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFevG~~~~~LRNIvD~y 318 (1187)
T COG1110 239 AYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVGSGGEGLRNIVDIY 318 (1187)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCccCccchhhhheeeee
Confidence 1122222211 12444444321110 011111
Q ss_pred eecCCCCccccccccccccCCCCEEEEee---HHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEE
Q 010836 219 ERLSPLVPLNVPLGSFSNIQTGDCIVTFS---RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295 (499)
Q Consensus 219 ~~~~~~~~~~~~l~~l~~~~~~~~iv~~s---~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iL 295 (499)
... ......+..+.....|.+|++-. ++.++++++.|++.|. ++..+|+.- .+.++.|.. |++++|
T Consensus 319 ~~~---~~~e~~~elvk~lG~GgLIfV~~d~G~e~aeel~e~Lr~~Gi-~a~~~~a~~-----~~~le~F~~--GeidvL 387 (1187)
T COG1110 319 VES---ESLEKVVELVKKLGDGGLIFVPIDYGREKAEELAEYLRSHGI-NAELIHAEK-----EEALEDFEE--GEVDVL 387 (1187)
T ss_pred ccC---ccHHHHHHHHHHhCCCeEEEEEcHHhHHHHHHHHHHHHhcCc-eEEEeeccc-----hhhhhhhcc--CceeEE
Confidence 111 22223334455667777666654 8999999999999988 899998842 478999999 999999
Q ss_pred Eecc----hhhcccccc--ccEEEEcccccc
Q 010836 296 VASD----AIGMGLNLN--ISRIIFSTMKKF 320 (499)
Q Consensus 296 vaT~----~~~~Gidip--v~~VI~~~~~~~ 320 (499)
|+.. ++-+|+|+| ++++|+++.+++
T Consensus 388 VGvAsyYG~lVRGlDLP~rirYaIF~GvPk~ 418 (1187)
T COG1110 388 VGVASYYGVLVRGLDLPHRIRYAVFYGVPKF 418 (1187)
T ss_pred EEecccccceeecCCchhheeEEEEecCCce
Confidence 9875 789999998 999999999963
No 117
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.63 E-value=1.2e-14 Score=156.32 Aligned_cols=268 Identities=15% Similarity=0.171 Sum_probs=150.7
Q ss_pred CceEEEEccCCccHHHHHHH---HHH---cCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCe---ec--ccCCCceE
Q 010836 77 RKVILHVGPTNSGKTHQALS---RLE---SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQE---RE--EVDGAKHR 145 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~---~l~---~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~---~~--~~~~~~~i 145 (499)
++..++..+||||||+.++. .+. ...++|+++|+.+|..|+.+.+..++..+....+.. .. ...+..++
T Consensus 263 ~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~~~~~~s~~~L~~~l~~~~~~ii 342 (667)
T TIGR00348 263 ERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQSLQKDCAERIESIAELKRLLEKDDGGII 342 (667)
T ss_pred CceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHhhCCCCCcccCCHHHHHHHHhCCCCCEE
Confidence 46799999999999999632 222 346789999999999999999998764322111110 01 11246788
Q ss_pred EEceeeccc-----cCCc------cEEEEecCcccCCCCCChhHHH-----HHhccccccceEeecCCCch---------
Q 010836 146 AVTVEMADV-----VSDY------DCAVIDEIQMLGCKTRGFSFTR-----ALLGICANELHLCGDPAAVP--------- 200 (499)
Q Consensus 146 v~T~e~~~~-----l~~~------~~iViDEah~~~~~~~g~~~~~-----~ll~l~~~~~~~~~~~~~~~--------- 200 (499)
++|...+.. ...+ .+||+||||+.....+...+.. ..+|+++++...-... +..
T Consensus 343 vtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l~~~~p~a~~lGfTaTP~~~~d~~-t~~~f~~~fg~~ 421 (667)
T TIGR00348 343 ITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYGELAKNLKKALKNASFFGFTGTPIFKKDRD-TSLTFAYVFGRY 421 (667)
T ss_pred EEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccchHHHHHHHhhCCCCcEEEEeCCCccccccc-ccccccCCCCCe
Confidence 888866531 1111 2899999998753311111111 1234444433210000 000
Q ss_pred ----HHHHHHHHcCCeEEEEeeeecCCCCccc---------------c--------------------------------
Q 010836 201 ----LIQQILQVTGDDVKVQSYERLSPLVPLN---------------V-------------------------------- 229 (499)
Q Consensus 201 ----~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------------~-------------------------------- 229 (499)
.+.+... -|-.+++..+.+........ .
T Consensus 422 i~~Y~~~~AI~-dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~ 500 (667)
T TIGR00348 422 LHRYFITDAIR-DGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPERIREITKESLKEKLQKTKKILFNEDRLESIAK 500 (667)
T ss_pred EEEeeHHHHhh-cCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhccccHHHHHHHHHHHHHHHhhhcChHHHHHHHH
Confidence 0000000 01111111111111000000 0
Q ss_pred -cccccc---ccCCCCEEEEe-eHHHHHHHHHHHHHcCC----CeEEEEcCCCCHH---------------------HHH
Q 010836 230 -PLGSFS---NIQTGDCIVTF-SRHAIYRLKKAIESRGK----HLCSIVYGSLPPE---------------------TRT 279 (499)
Q Consensus 230 -~l~~l~---~~~~~~~iv~~-s~~~~~~l~~~L~~~~~----~~v~~~hg~l~~~---------------------~R~ 279 (499)
.+.++. ....++.+||+ ++..|..+++.|.+... ....+++++.+.+ ...
T Consensus 501 ~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 580 (667)
T TIGR00348 501 DIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYY 580 (667)
T ss_pred HHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHH
Confidence 000110 01135556655 89999999999876532 1345555544332 123
Q ss_pred HHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHhhhccCCC-CCCCCCcEEEEEEcC
Q 010836 280 RQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGR-YGSKFPVGEVTCLDS 357 (499)
Q Consensus 280 ~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR-~g~~~~~g~~~~~~~ 357 (499)
..+++|+++ +..+|||.++++.+|+|.| +.+++... |+....++|.+||+.| ..+++..|.++.+..
T Consensus 581 ~~~~~Fk~~-~~~~ilIVvdmllTGFDaP~l~tLyldK----------plk~h~LlQai~R~nR~~~~~K~~g~IvDy~g 649 (667)
T TIGR00348 581 KDLERFKKE-ENPKLLIVVDMLLTGFDAPILNTLYLDK----------PLKYHGLLQAIARTNRIDGKDKTFGLIVDYRG 649 (667)
T ss_pred HHHHHhcCC-CCceEEEEEcccccccCCCccceEEEec----------cccccHHHHHHHHhccccCCCCCCEEEEECcC
Confidence 678888763 6789999999999999999 66666543 4445568999999999 455456688877654
No 118
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.61 E-value=1.3e-15 Score=136.44 Aligned_cols=136 Identities=24% Similarity=0.172 Sum_probs=95.4
Q ss_pred Cchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----HcCC--CEEEEccHHHHHHHHHHHHHhc----CCceeEe
Q 010836 63 TRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSS--SGIYCGPLRLLAWEVAKRLNKA----NVSCDLI 131 (499)
Q Consensus 63 ~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l----~~~~--~~l~l~P~r~La~q~~~~l~~~----g~~~~~~ 131 (499)
|+.|. +++.+. +++++++.||||+|||++++.++ .+++ +++|++|+++|+.|+++++.++ +.++..+
T Consensus 1 t~~Q~~~~~~i~--~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~~ 78 (169)
T PF00270_consen 1 TPLQQEAIEAII--SGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVLL 78 (169)
T ss_dssp -HHHHHHHHHHH--TTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEEE
T ss_pred CHHHHHHHHHHH--cCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeecccccccccccccccccccccccccc
Confidence 56788 899884 68999999999999999975443 3333 7899999999999999999865 3467777
Q ss_pred eCCeecc-------cCCCceEEEceeecc--------ccCCccEEEEecCcccCCCCCChhHHHHHhcccc-ccceEeec
Q 010836 132 TGQEREE-------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGD 195 (499)
Q Consensus 132 ~g~~~~~-------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~-~~~~~~~~ 195 (499)
+|+.... ..+..++++|++.+. .+.+++++|+||+|++.+...+..+..++-.+.. ...+++..
T Consensus 79 ~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~~~~~~~i~~ 158 (169)
T PF00270_consen 79 HGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKRFKNIQIILL 158 (169)
T ss_dssp STTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHTTTTSEEEEE
T ss_pred cccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHHHHHhcCCCCCcEEEE
Confidence 7755421 236889999996542 2345999999999999864223333333333322 24556666
Q ss_pred CCCch
Q 010836 196 PAAVP 200 (499)
Q Consensus 196 ~~~~~ 200 (499)
+++.+
T Consensus 159 SAT~~ 163 (169)
T PF00270_consen 159 SATLP 163 (169)
T ss_dssp ESSST
T ss_pred eeCCC
Confidence 66654
No 119
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.59 E-value=4.2e-14 Score=146.99 Aligned_cols=275 Identities=14% Similarity=0.120 Sum_probs=162.4
Q ss_pred CCCCCchhc-cchHH---HhcCCceEEEEccCCccHHHHHHHHH---Hc---CCCEEEEccHHHHHHHHHHHHHhc---C
Q 010836 59 FTDLTRPHT-WYPLA---RKKVRKVILHVGPTNSGKTHQALSRL---ES---SSSGIYCGPLRLLAWEVAKRLNKA---N 125 (499)
Q Consensus 59 ~~~l~~~q~-~~~~~---~~~~~~~vli~apTGsGKT~~~l~~l---~~---~~~~l~l~P~r~La~q~~~~l~~~---g 125 (499)
-..++..|. ++..+ -...++.+++++.||+|||..|++.+ .+ .+++|+++-+++|+.|.+..+..+ +
T Consensus 163 ~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P~~ 242 (875)
T COG4096 163 AIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLPFG 242 (875)
T ss_pred cccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCCCc
Confidence 344677776 55432 12245559999999999999986544 33 368999999999999999888764 5
Q ss_pred CceeEeeCCeecccCCCceEEEceeecc------------c-cCCccEEEEecCcccCCCCCChh---HHHHHhcccccc
Q 010836 126 VSCDLITGQEREEVDGAKHRAVTVEMAD------------V-VSDYDCAVIDEIQMLGCKTRGFS---FTRALLGICANE 189 (499)
Q Consensus 126 ~~~~~~~g~~~~~~~~~~~iv~T~e~~~------------~-l~~~~~iViDEah~~~~~~~g~~---~~~~ll~l~~~~ 189 (499)
-.+..+.+..... ...+.++|...+- + -..+|+|||||||+=....|... +..+..++++++
T Consensus 243 ~~~n~i~~~~~~~--s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~~~~~I~dYFdA~~~gLTATP 320 (875)
T COG4096 243 TKMNKIEDKKGDT--SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYSEWSSILDYFDAATQGLTATP 320 (875)
T ss_pred cceeeeecccCCc--ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHhhhHHHHHHHHHHHHhhccCc
Confidence 5555555433222 4677788874331 0 15599999999998654333322 233344555432
Q ss_pred c--------eEe-ecCCCc-hHHHHHHHHc---CCeEEEEee-----eecCCCC--------------------------
Q 010836 190 L--------HLC-GDPAAV-PLIQQILQVT---GDDVKVQSY-----ERLSPLV-------------------------- 225 (499)
Q Consensus 190 ~--------~~~-~~~~~~-~~~~~l~~~~---~~~~~~~~~-----~~~~~~~-------------------------- 225 (499)
- .+. |.+... .+-+.+.... ...+.+... .++...+
T Consensus 321 ~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i~~dd~~~~~~d~dr~~ 400 (875)
T COG4096 321 KETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAIDEDDQNFEARDFDRTL 400 (875)
T ss_pred ccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhccccCcccccccccccchhc
Confidence 1 122 222111 1111111100 000111000 0000000
Q ss_pred ---cccccc-----ccccc----cCCCCEEEEe-eHHHHHHHHHHHHHcC----CCeEEEEcCCCCHHHHHHHHHHhcCC
Q 010836 226 ---PLNVPL-----GSFSN----IQTGDCIVTF-SRHAIYRLKKAIESRG----KHLCSIVYGSLPPETRTRQATRFNDA 288 (499)
Q Consensus 226 ---~~~~~l-----~~l~~----~~~~~~iv~~-s~~~~~~l~~~L~~~~----~~~v~~~hg~l~~~~R~~~~~~f~~~ 288 (499)
.....+ ..+.. -..++.|||+ +..+|+.+...|.+.. ..-+..+.|+-.... ..++.|...
T Consensus 401 v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q--~~Id~f~~k 478 (875)
T COG4096 401 VIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQ--ALIDNFIDK 478 (875)
T ss_pred cccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhH--HHHHHHHhc
Confidence 000000 01111 0134456666 8999999999997652 234777888755543 455666553
Q ss_pred CCCccEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCC
Q 010836 289 SSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (499)
Q Consensus 289 ~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~ 346 (499)
..-.+|.++.+++.+|+|+| |.++|+...- .|...|+|++||+-|..+.
T Consensus 479 e~~P~IaitvdlL~TGiDvpev~nlVF~r~V---------rSktkF~QMvGRGTRl~~~ 528 (875)
T COG4096 479 EKYPRIAITVDLLTTGVDVPEVVNLVFDRKV---------RSKTKFKQMVGRGTRLCPD 528 (875)
T ss_pred CCCCceEEehhhhhcCCCchheeeeeehhhh---------hhHHHHHHHhcCccccCcc
Confidence 35678999999999999997 8888887653 3999999999999997553
No 120
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.55 E-value=4.2e-14 Score=120.67 Aligned_cols=102 Identities=27% Similarity=0.401 Sum_probs=91.6
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEc
Q 010836 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFS 315 (499)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~ 315 (499)
..+.++||+ +.+.++.+++.|.+... .+..+||++++.+|..+.+.|++ +..+||++|+++++|+|+| +++||++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~f~~--~~~~ili~t~~~~~G~d~~~~~~vi~~ 103 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKPGI-KVAALHGDGSQEEREEVLKDFRE--GEIVVLVATDVIARGIDLPNVSVVINY 103 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhcCC-cEEEEECCCCHHHHHHHHHHHHc--CCCcEEEEcChhhcCcChhhCCEEEEe
Confidence 355677777 89999999999988555 89999999999999999999999 8899999999999999998 9999999
Q ss_pred ccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEE
Q 010836 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTC 354 (499)
Q Consensus 316 ~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~ 354 (499)
+. +.+...+.|++||++|.|.. |.|+.
T Consensus 104 ~~---------~~~~~~~~Q~~GR~~R~~~~---~~~~~ 130 (131)
T cd00079 104 DL---------PWSPSSYLQRIGRAGRAGQK---GTAIL 130 (131)
T ss_pred CC---------CCCHHHheecccccccCCCC---ceEEe
Confidence 88 77999999999999999976 77654
No 121
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=99.50 E-value=3.8e-14 Score=146.76 Aligned_cols=343 Identities=16% Similarity=0.138 Sum_probs=193.1
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcC----C-----CEEEEccHHHHHHHHHHHHHhc-CCceeEeeCCeecc-----cC
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLESS----S-----SGIYCGPLRLLAWEVAKRLNKA-NVSCDLITGQEREE-----VD 140 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~~----~-----~~l~l~P~r~La~q~~~~l~~~-g~~~~~~~g~~~~~-----~~ 140 (499)
.+..+++.+.||+|||+++.+.|++. . .+.++.|+|..+..+++++.+. +-.++-..|...+. ..
T Consensus 392 dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prp 471 (1282)
T KOG0921|consen 392 ENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRP 471 (1282)
T ss_pred cCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccccccccccccc
Confidence 58899999999999999987777643 2 4577899999999999998742 33333333333322 12
Q ss_pred CCceEEEceeec-----cccCCccEEEEecCcccCCCCCChhHHHHHhcccc--ccce----------------------
Q 010836 141 GAKHRAVTVEMA-----DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA--NELH---------------------- 191 (499)
Q Consensus 141 ~~~~iv~T~e~~-----~~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~--~~~~---------------------- 191 (499)
...+..||.+.+ ..+..+.++|+||.|+.... +-.....+.++.. ..++
T Consensus 472 yg~i~fctvgvllr~~e~glrg~sh~i~deiherdv~--~dfll~~lr~m~~ty~dl~v~lmsatIdTd~f~~~f~~~p~ 549 (1282)
T KOG0921|consen 472 YGSIMFCTVGVLLRMMENGLRGISHVIIDEIHERDVD--TDFVLIVLREMISTYRDLRVVLMSATIDTDLFTNFFSSIPD 549 (1282)
T ss_pred ccceeeeccchhhhhhhhcccccccccchhhhhhccc--hHHHHHHHHhhhccchhhhhhhhhcccchhhhhhhhccccc
Confidence 456778888654 45688999999999998643 2111111111111 0111
Q ss_pred EeecCCCchHHHHHHH--------HcCCeEEEEeeee----cCCCC---------------------------------c
Q 010836 192 LCGDPAAVPLIQQILQ--------VTGDDVKVQSYER----LSPLV---------------------------------P 226 (499)
Q Consensus 192 ~~~~~~~~~~~~~l~~--------~~~~~~~~~~~~~----~~~~~---------------------------------~ 226 (499)
+....++.+.-.-+.. ..+.......+.. ..+.+ .
T Consensus 550 ~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l 629 (1282)
T KOG0921|consen 550 VTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGL 629 (1282)
T ss_pred eeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHH
Confidence 1111222221111111 1111111111100 00000 0
Q ss_pred cccccccc-cccCCCCEEEEe-eHHHHHHHHHHHHHc------CCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEec
Q 010836 227 LNVPLGSF-SNIQTGDCIVTF-SRHAIYRLKKAIESR------GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS 298 (499)
Q Consensus 227 ~~~~l~~l-~~~~~~~~iv~~-s~~~~~~l~~~L~~~------~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT 298 (499)
.+..+..+ .+.-.+-+++|+ ....+..|...+... ....+...|+.++..+..++.+.... |..++|++|
T Consensus 630 ~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~--gv~kii~st 707 (1282)
T KOG0921|consen 630 IEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPE--GVTKIILST 707 (1282)
T ss_pred HHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccc--ccccccccc
Confidence 00000011 011244455566 677777777777543 23368888988877766666555555 999999999
Q ss_pred chhhccccc-cccEEEEccccc--ccCc-------cccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCHHHHHhhhC
Q 010836 299 DAIGMGLNL-NISRIIFSTMKK--FDGV-------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL 368 (499)
Q Consensus 299 ~~~~~Gidi-pv~~VI~~~~~~--~~~~-------~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~~~~~~~~~ 368 (499)
++++..+++ ++.+||+....+ +... ...|.|..+..||.||+||..+ |.|+.++..- .++.+-.
T Consensus 708 niaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~----G~~f~lcs~a--rF~~l~~ 781 (1282)
T KOG0921|consen 708 NIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRP----GFCFHLCSRA--RFEALED 781 (1282)
T ss_pred ceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecc----cccccccHHH--HHHHHHh
Confidence 999999999 688888655443 1111 3567899999999999999988 8888887653 3443334
Q ss_pred CCCchhhhcCCCChHHHHH--------HHHh----cCCCccHHHHHHHHHHhcccCCCccccChHHHHHHHHhhccCC
Q 010836 369 EPSPMLESAGLFPNFDLIY--------MYSR----LHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLP 434 (499)
Q Consensus 369 ~~~~~i~~~~l~~~~~~l~--------~~~~----~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ 434 (499)
...+++.+..+....+.++ .|.. .++-....++-..+..+.+++.. ++++.+++.+..+|
T Consensus 782 ~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n------~elt~lg~~la~l~ 853 (1282)
T KOG0921|consen 782 HGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDAN------DELTPLGRMLARLP 853 (1282)
T ss_pred cCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhcc------Ccccchhhhhhhcc
Confidence 4444444444433333333 2221 12222222332333334444433 56777788777766
No 122
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.49 E-value=2.1e-13 Score=133.40 Aligned_cols=283 Identities=18% Similarity=0.183 Sum_probs=171.7
Q ss_pred CCCCCchhc-cchHHHhc-CCceEEEEccCCccHHHHHHHHHH-cCCCEEEEccHHHHHHHHHHHHHhc----CCceeEe
Q 010836 59 FTDLTRPHT-WYPLARKK-VRKVILHVGPTNSGKTHQALSRLE-SSSSGIYCGPLRLLAWEVAKRLNKA----NVSCDLI 131 (499)
Q Consensus 59 ~~~l~~~q~-~~~~~~~~-~~~~vli~apTGsGKT~~~l~~l~-~~~~~l~l~P~r~La~q~~~~l~~~----g~~~~~~ 131 (499)
-+.+++.|+ .+..+.-. .-+.-+|+.|.|+|||++.+-+.- -.+++|+++..-..++|+...+..+ .-.+...
T Consensus 300 st~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VSVeQWkqQfk~wsti~d~~i~rF 379 (776)
T KOG1123|consen 300 STQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVSVEQWKQQFKQWSTIQDDQICRF 379 (776)
T ss_pred ccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeecccEEEEecCccCHHHHHHHHHhhcccCccceEEe
Confidence 456889999 88776432 236789999999999999654332 2468899999999999999888764 3345566
Q ss_pred eCCeec-ccCCCceEEEceeeccc--------------c--CCccEEEEecCcccCCCCCChhHHHHH--------hccc
Q 010836 132 TGQERE-EVDGAKHRAVTVEMADV--------------V--SDYDCAVIDEIQMLGCKTRGFSFTRAL--------LGIC 186 (499)
Q Consensus 132 ~g~~~~-~~~~~~~iv~T~e~~~~--------------l--~~~~~iViDEah~~~~~~~g~~~~~~l--------l~l~ 186 (499)
|.+.+. ...++.++|.|+.|+.. + ..++++++||+|.+-.. .|.+.+ +||+
T Consensus 380 Tsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~----MFRRVlsiv~aHcKLGLT 455 (776)
T KOG1123|consen 380 TSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAK----MFRRVLSIVQAHCKLGLT 455 (776)
T ss_pred eccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHH----HHHHHHHHHHHHhhccce
Confidence 776655 44577788888866642 2 67999999999988532 222222 5566
Q ss_pred cccce---------E-eecCCCchHHHHHHHHcCCeEEEEeeeecCCCCc----------------------c-cccccc
Q 010836 187 ANELH---------L-CGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP----------------------L-NVPLGS 233 (499)
Q Consensus 187 ~~~~~---------~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----------------------~-~~~l~~ 233 (499)
++-++ + +|.---..+.-++. ..|.--.+...+.-.|... . ...-..
T Consensus 456 ATLvREDdKI~DLNFLIGPKlYEAnWmdL~-~kGhIA~VqCaEVWCpMt~eFy~eYL~~~t~kr~lLyvMNP~KFraCqf 534 (776)
T KOG1123|consen 456 ATLVREDDKITDLNFLIGPKLYEANWMDLQ-KKGHIAKVQCAEVWCPMTPEFYREYLRENTRKRMLLYVMNPNKFRACQF 534 (776)
T ss_pred eEEeeccccccccceeecchhhhccHHHHH-hCCceeEEeeeeeecCCCHHHHHHHHhhhhhhhheeeecCcchhHHHHH
Confidence 54221 1 11000000111111 1111111111111111000 0 000011
Q ss_pred ccc--cCCCCEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-cc
Q 010836 234 FSN--IQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-IS 310 (499)
Q Consensus 234 l~~--~~~~~~iv~~s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~ 310 (499)
+.+ ...|+.||+|+. .+..|.++--+.+ --.+||..++.+|.++++.|+. +..+.-++-+.+...++|+| ..
T Consensus 535 LI~~HE~RgDKiIVFsD-nvfALk~YAikl~---KpfIYG~Tsq~ERm~ILqnFq~-n~~vNTIFlSKVgDtSiDLPEAn 609 (776)
T KOG1123|consen 535 LIKFHERRGDKIIVFSD-NVFALKEYAIKLG---KPFIYGPTSQNERMKILQNFQT-NPKVNTIFLSKVGDTSIDLPEAN 609 (776)
T ss_pred HHHHHHhcCCeEEEEec-cHHHHHHHHHHcC---CceEECCCchhHHHHHHHhccc-CCccceEEEeeccCccccCCccc
Confidence 111 146777777752 2334444333333 3568999999999999999997 34678888889999999999 88
Q ss_pred EEEEcccccccCccccccChhhHHhhhccCCCCCCCCC---cEEEEEEcCCC
Q 010836 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFP---VGEVTCLDSED 359 (499)
Q Consensus 311 ~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~---~g~~~~~~~~~ 359 (499)
++|+.... --|..+-.||.||.-|+..... +...|.+.+.|
T Consensus 610 vLIQISSH--------~GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~D 653 (776)
T KOG1123|consen 610 VLIQISSH--------GGSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKD 653 (776)
T ss_pred EEEEEccc--------ccchHHHHHHHHHHHHHhhcCccccceeeeeeeecc
Confidence 88876542 2267788999999998765322 24456665555
No 123
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.49 E-value=8.5e-13 Score=141.35 Aligned_cols=104 Identities=19% Similarity=0.202 Sum_probs=85.4
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccE-----
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISR----- 311 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~----- 311 (499)
...++||+ |+..++.+++.|.+.+. ...++|+ .+.+|...+..|.. +...|+||||+++||+||+ ...
T Consensus 598 grpVLIft~Sve~sE~Ls~~L~~~gI-~h~vLna--kq~~REa~Iia~AG--~~g~VtIATNMAGRGtDIkl~~~V~~vG 672 (1025)
T PRK12900 598 GQPVLVGTASVEVSETLSRMLRAKRI-AHNVLNA--KQHDREAEIVAEAG--QKGAVTIATNMAGRGTDIKLGEGVRELG 672 (1025)
T ss_pred CCCEEEEeCcHHHHHHHHHHHHHcCC-CceeecC--CHHHhHHHHHHhcC--CCCeEEEeccCcCCCCCcCCccchhhhC
Confidence 44566666 89999999999999887 8889997 57788999999998 8889999999999999997 332
Q ss_pred ---EEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 312 ---IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 312 ---VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
||.+.. |.|...+.||+|||||.|.. |....+.+.+
T Consensus 673 GL~VIgter---------hes~Rid~Ql~GRtGRqGdp---GsS~ffvSle 711 (1025)
T PRK12900 673 GLFILGSER---------HESRRIDRQLRGRAGRQGDP---GESVFYVSLE 711 (1025)
T ss_pred CceeeCCCC---------CchHHHHHHHhhhhhcCCCC---cceEEEechh
Confidence 355444 66888999999999999998 7776665544
No 124
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.49 E-value=1.2e-13 Score=107.43 Aligned_cols=80 Identities=30% Similarity=0.455 Sum_probs=73.3
Q ss_pred HHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccccccCccccccChh
Q 010836 253 RLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVP 331 (499)
Q Consensus 253 ~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~ 331 (499)
.+++.|++.+. .+..+||++++++|..+++.|++ +..+||++|+++++|+|+| ++.||+++. |.+..
T Consensus 2 ~l~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~f~~--~~~~vli~t~~~~~Gi~~~~~~~vi~~~~---------~~~~~ 69 (82)
T smart00490 2 ELAELLKELGI-KVARLHGGLSQEEREEILEKFNN--GKIKVLVATDVAERGLDLPGVDLVIIYDL---------PWSPA 69 (82)
T ss_pred HHHHHHHHCCC-eEEEEECCCCHHHHHHHHHHHHc--CCCeEEEECChhhCCcChhcCCEEEEeCC---------CCCHH
Confidence 45677777655 89999999999999999999999 8889999999999999998 999999988 77999
Q ss_pred hHHhhhccCCCCC
Q 010836 332 EVKQIAGRAGRYG 344 (499)
Q Consensus 332 ~~~Qr~GRagR~g 344 (499)
.|.|++||++|.|
T Consensus 70 ~~~Q~~gR~~R~g 82 (82)
T smart00490 70 SYIQRIGRAGRAG 82 (82)
T ss_pred HHHHhhcccccCC
Confidence 9999999999976
No 125
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.48 E-value=5.5e-12 Score=140.11 Aligned_cols=116 Identities=15% Similarity=0.249 Sum_probs=84.5
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHHcCC-CeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc---ccEE
Q 010836 238 QTGDCIVTF-SRHAIYRLKKAIESRGK-HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---ISRI 312 (499)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~-~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip---v~~V 312 (499)
.+|.++|+| |.+..+.+++.|..... ....++..+.. ..|.++++.|++ ++..||+||+.+.+|||+| ...|
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~--~~~~iLlgt~sf~EGVD~~g~~l~~v 749 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNN--GEKAILLGTSSFWEGVDFPGNGLVCL 749 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHh--CCCeEEEEcceeecccccCCCceEEE
Confidence 467788888 89999999999975211 12233333333 467889999999 8889999999999999995 6678
Q ss_pred EEcccccccCc---------------------cccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC
Q 010836 313 IFSTMKKFDGV---------------------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 313 I~~~~~~~~~~---------------------~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~ 358 (499)
|..+++.-.+. ..-|.....+.|-+||.=|... ..|.++.++..
T Consensus 750 iI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~--D~G~v~ilD~R 814 (850)
T TIGR01407 750 VIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRREN--DRGSIVILDRR 814 (850)
T ss_pred EEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCC--ceEEEEEEccc
Confidence 88887753332 0113345678999999999876 45888887665
No 126
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.48 E-value=1.7e-12 Score=133.12 Aligned_cols=111 Identities=25% Similarity=0.267 Sum_probs=84.9
Q ss_pred CCCCEEEEeeH--HHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCC-CCccEEEecchhhccccc-cccEEE
Q 010836 238 QTGDCIVTFSR--HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDAS-SEFDVLVASDAIGMGLNL-NISRII 313 (499)
Q Consensus 238 ~~~~~iv~~s~--~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~-g~~~iLvaT~~~~~Gidi-pv~~VI 313 (499)
..|..|+.||+ +..+-+.++.. ...+..+-+.|+++.++|...++.|+.++ ...-.|++|-+.+-|||+ -.|.||
T Consensus 485 ~~GhRVLIFSQmt~mLDILeDyc~-~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVI 563 (971)
T KOG0385|consen 485 EQGHRVLIFSQMTRMLDILEDYCM-LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVI 563 (971)
T ss_pred hCCCeEEEeHHHHHHHHHHHHHHH-hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEE
Confidence 35666666642 22333333333 33348999999999999999999999943 456789999999999999 599999
Q ss_pred EcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 314 ~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
+||. .+++..=+|..-||.|.|+. ..-.||.+..++
T Consensus 564 lyDS---------DWNPQ~DLQAmDRaHRIGQ~-K~V~V~RLiten 599 (971)
T KOG0385|consen 564 LYDS---------DWNPQVDLQAMDRAHRIGQK-KPVVVYRLITEN 599 (971)
T ss_pred EecC---------CCCchhhhHHHHHHHhhCCc-CceEEEEEeccc
Confidence 9988 56888888999999999986 446778887766
No 127
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.47 E-value=2.5e-13 Score=144.77 Aligned_cols=115 Identities=21% Similarity=0.213 Sum_probs=97.3
Q ss_pred CCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEccc
Q 010836 240 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTM 317 (499)
Q Consensus 240 ~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~ 317 (499)
..++||+ |++.++.+++.|.+.+. .+..+||+++..+|.++++.|+. |+++|+|||+++++|+|+| ++.||+++.
T Consensus 443 ~~vLIf~~tk~~ae~L~~~L~~~gi-~~~~lh~~~~~~eR~~~l~~fr~--G~i~VLV~t~~L~rGfDiP~v~lVvi~Da 519 (655)
T TIGR00631 443 ERVLVTTLTKKMAEDLTDYLKELGI-KVRYLHSEIDTLERVEIIRDLRL--GEFDVLVGINLLREGLDLPEVSLVAILDA 519 (655)
T ss_pred CEEEEEECCHHHHHHHHHHHhhhcc-ceeeeeCCCCHHHHHHHHHHHhc--CCceEEEEcChhcCCeeeCCCcEEEEeCc
Confidence 4466666 89999999999998876 89999999999999999999999 9999999999999999998 999999885
Q ss_pred ccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCHHHHHh
Q 010836 318 KKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHK 365 (499)
Q Consensus 318 ~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~~~~~~ 365 (499)
..|. .|.+..+|+||+|||||... |.|+.+.+.....+.+
T Consensus 520 difG----~p~~~~~~iqriGRagR~~~----G~vi~~~~~~~~~~~~ 559 (655)
T TIGR00631 520 DKEG----FLRSERSLIQTIGRAARNVN----GKVIMYADKITDSMQK 559 (655)
T ss_pred cccc----CCCCHHHHHHHhcCCCCCCC----CEEEEEEcCCCHHHHH
Confidence 4432 26688999999999999854 8888777655433333
No 128
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.45 E-value=1.2e-12 Score=140.57 Aligned_cols=109 Identities=20% Similarity=0.212 Sum_probs=94.5
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcc
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 316 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~ 316 (499)
..+++||+ |++.++.+++.|.+.+. .+..+||++++.+|..+++.|+. |+..|+|||+++++|+|+| ++.||+++
T Consensus 446 g~~viIf~~t~~~ae~L~~~L~~~gi-~~~~~h~~~~~~~R~~~l~~f~~--g~i~vlV~t~~L~rGfdlp~v~lVii~d 522 (652)
T PRK05298 446 GERVLVTTLTKRMAEDLTDYLKELGI-KVRYLHSDIDTLERVEIIRDLRL--GEFDVLVGINLLREGLDIPEVSLVAILD 522 (652)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhhcce-eEEEEECCCCHHHHHHHHHHHHc--CCceEEEEeCHHhCCccccCCcEEEEeC
Confidence 34466666 89999999999998876 89999999999999999999999 9999999999999999997 99999988
Q ss_pred cccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC
Q 010836 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 317 ~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~ 358 (499)
...|.- |.+..+|+||+||+||.. . |.|+.+.+.
T Consensus 523 ~eifG~----~~~~~~yiqr~GR~gR~~-~---G~~i~~~~~ 556 (652)
T PRK05298 523 ADKEGF----LRSERSLIQTIGRAARNV-N---GKVILYADK 556 (652)
T ss_pred Cccccc----CCCHHHHHHHhccccCCC-C---CEEEEEecC
Confidence 755431 568899999999999974 4 888877764
No 129
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.44 E-value=4.2e-12 Score=135.09 Aligned_cols=92 Identities=9% Similarity=-0.048 Sum_probs=67.6
Q ss_pred EEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHh-cC-CceeEeeCCeecc---------cCC-Cce
Q 010836 81 LHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNK-AN-VSCDLITGQEREE---------VDG-AKH 144 (499)
Q Consensus 81 li~apTGsGKT~~~l~~l----~~~~~~l~l~P~r~La~q~~~~l~~-~g-~~~~~~~g~~~~~---------~~~-~~~ 144 (499)
+..+.+|||||.+|++.+ ..++++|+++|...|+.|+.++|++ +| ..+..+++..... ..+ ..+
T Consensus 164 i~~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~I 243 (665)
T PRK14873 164 VWQALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARV 243 (665)
T ss_pred HhhcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcE
Confidence 334446999999997655 4567899999999999999999985 55 6788888753321 123 445
Q ss_pred EEEce-eeccccCCccEEEEecCcccCCC
Q 010836 145 RAVTV-EMADVVSDYDCAVIDEIQMLGCK 172 (499)
Q Consensus 145 iv~T~-e~~~~l~~~~~iViDEah~~~~~ 172 (499)
+++|- -++.-+.++++|||||.|.-+..
T Consensus 244 ViGtRSAvFaP~~~LgLIIvdEEhd~syk 272 (665)
T PRK14873 244 VVGTRSAVFAPVEDLGLVAIWDDGDDLLA 272 (665)
T ss_pred EEEcceeEEeccCCCCEEEEEcCCchhhc
Confidence 55554 44556799999999999987643
No 130
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.41 E-value=2.8e-11 Score=126.46 Aligned_cols=106 Identities=18% Similarity=0.057 Sum_probs=76.5
Q ss_pred CCchhccchHHHhcCCceEEEEccCCccHHHHHHH----HHHcCCCEEEEccHHHHHHHHHHHHHh----cCCceeEeeC
Q 010836 62 LTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALS----RLESSSSGIYCGPLRLLAWEVAKRLNK----ANVSCDLITG 133 (499)
Q Consensus 62 l~~~q~~~~~~~~~~~~~vli~apTGsGKT~~~l~----~l~~~~~~l~l~P~r~La~q~~~~l~~----~g~~~~~~~g 133 (499)
+.+.|- +-.+..++|+ +....||+|||+++.. ..+.++.+.++.|+--||.+-++.+.+ +|++|+++++
T Consensus 79 ~ydvQl-ig~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg~i~~ 155 (764)
T PRK12326 79 PFDVQL-LGALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVGWITE 155 (764)
T ss_pred cchHHH-HHHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 445555 2222335565 7899999999999733 235567889999999999999988774 5999999988
Q ss_pred Ceecc----cCCCceEEEceeec--cc-------------cCCccEEEEecCcccC
Q 010836 134 QEREE----VDGAKHRAVTVEMA--DV-------------VSDYDCAVIDEIQMLG 170 (499)
Q Consensus 134 ~~~~~----~~~~~~iv~T~e~~--~~-------------l~~~~~iViDEah~~~ 170 (499)
..... .-.++++++|..-+ |. .+.+.+.||||+|.++
T Consensus 156 ~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 156 ESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred CCCHHHHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 65432 23678888887322 11 2668999999999875
No 131
>COG4889 Predicted helicase [General function prediction only]
Probab=99.36 E-value=6.6e-12 Score=130.16 Aligned_cols=81 Identities=19% Similarity=0.247 Sum_probs=64.3
Q ss_pred eEEEE--cCCCCHHHHHHHHHHhcC-CCCCccEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHhhhccC
Q 010836 265 LCSIV--YGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRA 340 (499)
Q Consensus 265 ~v~~~--hg~l~~~~R~~~~~~f~~-~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRa 340 (499)
.+.+- .|.|...+|...++.-.. ++.+++||-.--.+++|+|+| .+.||+++..+ +..+.+|-+||+
T Consensus 499 ~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEGVDVPaLDsViFf~pr~---------smVDIVQaVGRV 569 (1518)
T COG4889 499 KISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEGVDVPALDSVIFFDPRS---------SMVDIVQAVGRV 569 (1518)
T ss_pred eEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcCCCccccceEEEecCch---------hHHHHHHHHHHH
Confidence 44444 488999999544433212 458899999999999999999 99999998844 899999999999
Q ss_pred CCCCCCCCcEEEEE
Q 010836 341 GRYGSKFPVGEVTC 354 (499)
Q Consensus 341 gR~g~~~~~g~~~~ 354 (499)
.|..+++..|+++.
T Consensus 570 MRKa~gK~yGYIIL 583 (1518)
T COG4889 570 MRKAKGKKYGYIIL 583 (1518)
T ss_pred HHhCcCCccceEEE
Confidence 99887767788754
No 132
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.34 E-value=9.2e-11 Score=121.18 Aligned_cols=111 Identities=28% Similarity=0.334 Sum_probs=89.1
Q ss_pred CCCCEEEEe--eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccccc-cccEEEE
Q 010836 238 QTGDCIVTF--SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIF 314 (499)
Q Consensus 238 ~~~~~iv~~--s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidi-pv~~VI~ 314 (499)
..|+.++.| ++....-+...|....+...+-+.|..+...|...+++|++.....-.|++|.+.+-|+|+ .+++||+
T Consensus 544 kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVII 623 (923)
T KOG0387|consen 544 KQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVII 623 (923)
T ss_pred hCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCceEEE
Confidence 455556656 5777777777777544558999999999999999999999855556789999999999999 6999999
Q ss_pred cccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC
Q 010836 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 315 ~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~ 358 (499)
+|+ .++++.=.|..-||=|.|++ ..-.||.+...
T Consensus 624 fDP---------dWNPStD~QAreRawRiGQk-kdV~VYRL~t~ 657 (923)
T KOG0387|consen 624 FDP---------DWNPSTDNQARERAWRIGQK-KDVVVYRLMTA 657 (923)
T ss_pred ECC---------CCCCccchHHHHHHHhhcCc-cceEEEEEecC
Confidence 988 56888889999999999986 33456766554
No 133
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.33 E-value=7.8e-13 Score=131.18 Aligned_cols=275 Identities=11% Similarity=0.059 Sum_probs=164.2
Q ss_pred cCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHH------HHHHHcCCCEEEEccHHHHHHHHHHHHH-------h
Q 010836 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA------LSRLESSSSGIYCGPLRLLAWEVAKRLN-------K 123 (499)
Q Consensus 58 ~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~------l~~l~~~~~~l~l~P~r~La~q~~~~l~-------~ 123 (499)
.-...-.+|. ++..+ .+++++++.-.|.+||++++ ++.+-.....+++.|+.++++...+.+. +
T Consensus 283 ~~E~~~~~~~~~~~~~--~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~ 360 (1034)
T KOG4150|consen 283 TGESGIAISLELLKFA--SEGRADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKA 360 (1034)
T ss_pred cccchhhhhHHHHhhh--hhcccccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhh
Confidence 3444555666 66665 56999999999999999995 2333344567999999999987654332 1
Q ss_pred c-CCceeEeeCCeecc-----cCCCceEEEceeecc------------ccCCccEEEEecCcccCCCCCChhHH---HHH
Q 010836 124 A-NVSCDLITGQEREE-----VDGAKHRAVTVEMAD------------VVSDYDCAVIDEIQMLGCKTRGFSFT---RAL 182 (499)
Q Consensus 124 ~-g~~~~~~~g~~~~~-----~~~~~~iv~T~e~~~------------~l~~~~~iViDEah~~~~~~~g~~~~---~~l 182 (499)
. ...|....|..... ..+.+.++..+.+.. ++-...++++||+|.+.-. .|.... +.|
T Consensus 361 ~K~A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~-~~~~~~~~~R~L 439 (1034)
T KOG4150|consen 361 RKSAYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP-TKALAQDQLRAL 439 (1034)
T ss_pred hhcceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc-hhhHHHHHHHHH
Confidence 1 11122222211110 114556666554331 1345678999999998643 122211 223
Q ss_pred hccc-----cccceEeecCCCchHHHHHHHHc-CC-eEEEEe-e------------eec-CCCCcc--cccc----cccc
Q 010836 183 LGIC-----ANELHLCGDPAAVPLIQQILQVT-GD-DVKVQS-Y------------ERL-SPLVPL--NVPL----GSFS 235 (499)
Q Consensus 183 l~l~-----~~~~~~~~~~~~~~~~~~l~~~~-~~-~~~~~~-~------------~~~-~~~~~~--~~~l----~~l~ 235 (499)
+.+. .....+...+++.+...++.+.. +- ++.+.. . ... .|.... ...+ ..+.
T Consensus 440 ~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~ 519 (1034)
T KOG4150|consen 440 SDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFA 519 (1034)
T ss_pred HHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHH
Confidence 2222 12445555555554333333221 11 111111 1 000 010000 0011 0111
Q ss_pred c--cCCCCEEEEe-eHHHHHHHHHHHHHc----CC---CeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccc
Q 010836 236 N--IQTGDCIVTF-SRHAIYRLKKAIESR----GK---HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGL 305 (499)
Q Consensus 236 ~--~~~~~~iv~~-s~~~~~~l~~~L~~~----~~---~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gi 305 (499)
+ ...-.+|-|+ +++-|+-+....++. +. ..+..+.|+...++|++++...-. |+..-++||++++-||
T Consensus 520 ~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~--G~L~giIaTNALELGI 597 (1034)
T KOG4150|consen 520 EMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFG--GKLCGIIATNALELGI 597 (1034)
T ss_pred HHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhC--CeeeEEEecchhhhcc
Confidence 1 1234566666 888887765554432 11 136678899999999999998887 9999999999999999
Q ss_pred ccc-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCC
Q 010836 306 NLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (499)
Q Consensus 306 dip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~ 346 (499)
||. .+.|+..+. |.|.++++|..|||||....
T Consensus 598 DIG~LDAVl~~GF---------P~S~aNl~QQ~GRAGRRNk~ 630 (1034)
T KOG4150|consen 598 DIGHLDAVLHLGF---------PGSIANLWQQAGRAGRRNKP 630 (1034)
T ss_pred ccccceeEEEccC---------chhHHHHHHHhccccccCCC
Confidence 995 999999999 88999999999999999875
No 134
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.33 E-value=2.6e-11 Score=130.31 Aligned_cols=111 Identities=27% Similarity=0.343 Sum_probs=94.3
Q ss_pred CCCCEEEEee--HHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcC-CCCCccEEEecchhhccccc-cccEEE
Q 010836 238 QTGDCIVTFS--RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNL-NISRII 313 (499)
Q Consensus 238 ~~~~~iv~~s--~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~-~~g~~~iLvaT~~~~~Gidi-pv~~VI 313 (499)
..|..|+.|| .+...-|+++|...+. ..--+-|++..+.|+..++.|+. +......|+||-+.+-|||+ -+|.||
T Consensus 697 ~~GHrVLIFSQMVRmLDIL~eYL~~r~y-pfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatADTVI 775 (1373)
T KOG0384|consen 697 EGGHRVLIFSQMVRMLDILAEYLSLRGY-PFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATADTVI 775 (1373)
T ss_pred cCCceEEEhHHHHHHHHHHHHHHHHcCC-cceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccceEE
Confidence 3556666775 6778888999988776 88889999999999999999999 34567899999999999999 599999
Q ss_pred EcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 314 ~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
++|. .+++.+=+|..-||.|.|++ ..-.||.+.+.+
T Consensus 776 IFDS---------DWNPQNDLQAqARaHRIGQk-k~VnVYRLVTk~ 811 (1373)
T KOG0384|consen 776 IFDS---------DWNPQNDLQAQARAHRIGQK-KHVNVYRLVTKN 811 (1373)
T ss_pred EeCC---------CCCcchHHHHHHHHHhhccc-ceEEEEEEecCC
Confidence 9988 67899999999999999996 556678887765
No 135
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.31 E-value=9e-11 Score=125.59 Aligned_cols=91 Identities=21% Similarity=0.079 Sum_probs=70.6
Q ss_pred EEEEccCCccHHHHHHHH----HHcCCCEEEEccHHHHHHHHHHHHHh----cCCceeEeeCCeecc----cCCCceEEE
Q 010836 80 ILHVGPTNSGKTHQALSR----LESSSSGIYCGPLRLLAWEVAKRLNK----ANVSCDLITGQEREE----VDGAKHRAV 147 (499)
Q Consensus 80 vli~apTGsGKT~~~l~~----l~~~~~~l~l~P~r~La~q~~~~l~~----~g~~~~~~~g~~~~~----~~~~~~iv~ 147 (499)
-+....||+|||+++..+ .+.+..+.+++|+--||.+-++.+.. +|++|+++++..... .-.++++++
T Consensus 98 ~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i~~~~~~~err~~Y~~dI~YG 177 (913)
T PRK13103 98 KIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIVTPFQPPEEKRAAYAADITYG 177 (913)
T ss_pred ccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEECCCCCHHHHHHHhcCCEEEE
Confidence 388999999999997433 34567888999999999999998875 499999998864332 225788899
Q ss_pred ceeec--cc-------------cCCccEEEEecCcccC
Q 010836 148 TVEMA--DV-------------VSDYDCAVIDEIQMLG 170 (499)
Q Consensus 148 T~e~~--~~-------------l~~~~~iViDEah~~~ 170 (499)
|...+ |. ..++.++||||+|.++
T Consensus 178 T~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 178 TNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred cccccccchhhccceechhhhcccccceeEechhhhee
Confidence 87443 21 2678999999999885
No 136
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.30 E-value=2.1e-11 Score=111.43 Aligned_cols=127 Identities=23% Similarity=0.165 Sum_probs=87.5
Q ss_pred ccCCCCCchhc-cchHHHhcCC-ceEEEEccCCccHHHHHHHHHH----cC--CCEEEEccHHHHHHHHHHHHHhcC---
Q 010836 57 FDFTDLTRPHT-WYPLARKKVR-KVILHVGPTNSGKTHQALSRLE----SS--SSGIYCGPLRLLAWEVAKRLNKAN--- 125 (499)
Q Consensus 57 ~~~~~l~~~q~-~~~~~~~~~~-~~vli~apTGsGKT~~~l~~l~----~~--~~~l~l~P~r~La~q~~~~l~~~g--- 125 (499)
+++..+++.|. ++..+ .+. +.+++.+|||||||.++...+. .. .+++|++|++.++.|+.+++.+..
T Consensus 4 ~~~~~~~~~Q~~~~~~~--~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~ 81 (201)
T smart00487 4 FGFEPLRPYQKEAIEAL--LSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSL 81 (201)
T ss_pred cCCCCCCHHHHHHHHHH--HcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccC
Confidence 46788999999 88877 445 8999999999999997644433 22 678999999999999999998654
Q ss_pred --CceeEeeCCeec-----ccCCC-ceEEEceeecc--------ccCCccEEEEecCcccCCCCCChhHHHHHhcc
Q 010836 126 --VSCDLITGQERE-----EVDGA-KHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI 185 (499)
Q Consensus 126 --~~~~~~~g~~~~-----~~~~~-~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l 185 (499)
.......+.... ...+. .++++|++.+. ...+++++|+||+|++....+...+...+..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~~~~ 157 (201)
T smart00487 82 GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157 (201)
T ss_pred CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHHHHHhC
Confidence 233344443210 11233 78888875442 23568899999999998532333344343333
No 137
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.23 E-value=4.9e-11 Score=102.44 Aligned_cols=95 Identities=24% Similarity=0.234 Sum_probs=73.2
Q ss_pred ceEEEEccCCccHHHHHHHHH---H---cCCCEEEEccHHHHHHHHHHHHHhcC---CceeEeeCCeecc------cCCC
Q 010836 78 KVILHVGPTNSGKTHQALSRL---E---SSSSGIYCGPLRLLAWEVAKRLNKAN---VSCDLITGQEREE------VDGA 142 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l~~l---~---~~~~~l~l~P~r~La~q~~~~l~~~g---~~~~~~~g~~~~~------~~~~ 142 (499)
+++++.+|||+|||++++..+ . ..++++|++|++.++.|+.+.+.... ..+..+.+..... ..+.
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSIKQQEKLLSGKT 80 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcchhHHHHHhcCCC
Confidence 468999999999999975443 2 34788999999999999998887543 6677777755433 3577
Q ss_pred ceEEEceeecc--------ccCCccEEEEecCcccCCC
Q 010836 143 KHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCK 172 (499)
Q Consensus 143 ~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~ 172 (499)
.++++|++.+. ....++++||||+|.+...
T Consensus 81 ~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~ 118 (144)
T cd00046 81 DIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQ 118 (144)
T ss_pred CEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhc
Confidence 88899986442 2357999999999999865
No 138
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.23 E-value=3e-10 Score=120.06 Aligned_cols=102 Identities=26% Similarity=0.216 Sum_probs=84.5
Q ss_pred eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCC-ccEEEecchhhccccc-cccEEEEcccccccCcc
Q 010836 247 SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSE-FDVLVASDAIGMGLNL-NISRIIFSTMKKFDGVE 324 (499)
Q Consensus 247 s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~-~~iLvaT~~~~~Gidi-pv~~VI~~~~~~~~~~~ 324 (499)
......++.+.+.+..+..++.+||.++..+|+.+++.|+++.+. .-.|.+|-+.+.|||+ ..++||.+|.
T Consensus 603 ny~~tldl~e~~~~~~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~------- 675 (776)
T KOG0390|consen 603 NYTQTLDLFEQLCRWRGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDP------- 675 (776)
T ss_pred cHHHHHHHHHHHHhhcCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCC-------
Confidence 466666666666655566999999999999999999999996666 5567777899999999 8999999998
Q ss_pred ccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC
Q 010836 325 LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 325 ~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~ 358 (499)
.++++.=.|.++||=|.|++ ..-++|.+-..
T Consensus 676 --dWNPa~d~QAmaR~~RdGQK-k~v~iYrLlat 706 (776)
T KOG0390|consen 676 --DWNPAVDQQAMARAWRDGQK-KPVYIYRLLAT 706 (776)
T ss_pred --CCCchhHHHHHHHhccCCCc-ceEEEEEeecC
Confidence 78999999999999999997 44556666544
No 139
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.19 E-value=6.5e-10 Score=117.23 Aligned_cols=257 Identities=16% Similarity=0.183 Sum_probs=145.0
Q ss_pred cCCceEEEEccCCccHHHHHHHHHHcC-----CCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCee---cccCCCceEE
Q 010836 75 KVRKVILHVGPTNSGKTHQALSRLESS-----SSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQER---EEVDGAKHRA 146 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l~~l~~~-----~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~---~~~~~~~~iv 146 (499)
..+...++.+|.|||||++.+.++... .+++++..+++|+.+++.+++..++.--..+.+.. ........++
T Consensus 47 ~~~~V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~i~~~~~~rLi 126 (824)
T PF02399_consen 47 QKRGVLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYIIDGRPYDRLI 126 (824)
T ss_pred CCCCeEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeeccccccccccccCeEE
Confidence 357888999999999999988888653 68999999999999999999977653111111111 1111235566
Q ss_pred Eceeecc-----ccCCccEEEEecCcccCCCCCChh------HHHHHhccccccceE-eecCCCchHHHHHHHHc-C-Ce
Q 010836 147 VTVEMAD-----VVSDYDCAVIDEIQMLGCKTRGFS------FTRALLGICANELHL-CGDPAAVPLIQQILQVT-G-DD 212 (499)
Q Consensus 147 ~T~e~~~-----~l~~~~~iViDEah~~~~~~~g~~------~~~~ll~l~~~~~~~-~~~~~~~~~~~~l~~~~-~-~~ 212 (499)
+..+.+. .+.++|+|||||+-.....-.... ....+..+..+.-.+ +.+...-+..-+++... | +.
T Consensus 127 vqIdSL~R~~~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvdFl~~~Rp~~~ 206 (824)
T PF02399_consen 127 VQIDSLHRLDGSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVDFLASCRPDEN 206 (824)
T ss_pred EEehhhhhcccccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHHHHHHhCCCCc
Confidence 6665542 346799999999976643210000 011222232222222 22222223333333333 2 22
Q ss_pred EE--EEeeeec----------------------CCCC----c--------c----------cccc--ccccccCCCCEEE
Q 010836 213 VK--VQSYERL----------------------SPLV----P--------L----------NVPL--GSFSNIQTGDCIV 244 (499)
Q Consensus 213 ~~--~~~~~~~----------------------~~~~----~--------~----------~~~l--~~l~~~~~~~~iv 244 (499)
+. +..|... .+-+ . . .... ..+.++..|..|-
T Consensus 207 i~vI~n~y~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L~~~L~~gknIc 286 (824)
T PF02399_consen 207 IHVIVNTYASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSELLARLNAGKNIC 286 (824)
T ss_pred EEEEEeeeecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHHHHHHhCCCcEE
Confidence 22 2222100 0000 0 0 0000 0112234444444
Q ss_pred -Ee-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc---ccEEEEcccc-
Q 010836 245 -TF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---ISRIIFSTMK- 318 (499)
Q Consensus 245 -~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip---v~~VI~~~~~- 318 (499)
|. |...++.+++......+ ++..++|.-+.. .+ +.| ++.+|++=|+++..|+++. .+.|.-|=-+
T Consensus 287 vfsSt~~~~~~v~~~~~~~~~-~Vl~l~s~~~~~---dv-~~W----~~~~VviYT~~itvG~Sf~~~HF~~~f~yvk~~ 357 (824)
T PF02399_consen 287 VFSSTVSFAEIVARFCARFTK-KVLVLNSTDKLE---DV-ESW----KKYDVVIYTPVITVGLSFEEKHFDSMFAYVKPM 357 (824)
T ss_pred EEeChHHHHHHHHHHHHhcCC-eEEEEcCCCCcc---cc-ccc----cceeEEEEeceEEEEeccchhhceEEEEEecCC
Confidence 33 57777777777776655 888888876665 23 223 4589999999999999993 5555533111
Q ss_pred cccCccccccChhhHHhhhccCCCCCCC
Q 010836 319 KFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (499)
Q Consensus 319 ~~~~~~~~p~s~~~~~Qr~GRagR~g~~ 346 (499)
.+ -.+..+..|++||+-....+
T Consensus 358 ~~------gpd~~s~~Q~lgRvR~l~~~ 379 (824)
T PF02399_consen 358 SY------GPDMVSVYQMLGRVRSLLDN 379 (824)
T ss_pred CC------CCcHHHHHHHHHHHHhhccC
Confidence 11 12556799999999776653
No 140
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.18 E-value=1.1e-09 Score=107.74 Aligned_cols=111 Identities=20% Similarity=0.216 Sum_probs=85.8
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcc
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 316 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~ 316 (499)
+.+.+||. -....+.+...+.+.+. ...-+.|..++..|....+.|+..+...--+++-.++++|+++. .+.||+..
T Consensus 492 ~~KflVFaHH~~vLd~Iq~~~~~r~v-g~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaE 570 (689)
T KOG1000|consen 492 PRKFLVFAHHQIVLDTIQVEVNKRKV-GSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAE 570 (689)
T ss_pred CceEEEEehhHHHHHHHHHHHHHcCC-CeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEE
Confidence 33445555 56666777777777766 67778899999999999999998333334566777899999995 99999998
Q ss_pred cccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 317 ~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
. ++++.-++|.-.|+.|.|++.+.++.|......
T Consensus 571 L---------~wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT 604 (689)
T KOG1000|consen 571 L---------HWNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGT 604 (689)
T ss_pred e---------cCCCceEEechhhhhhccccceeeEEEEEecCc
Confidence 8 678999999999999999986666666665544
No 141
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.18 E-value=9e-10 Score=121.06 Aligned_cols=113 Identities=16% Similarity=0.165 Sum_probs=80.8
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc---ccEEE
Q 010836 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---ISRII 313 (499)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip---v~~VI 313 (499)
.+|.++|+| |.+..+.+++.|..... .+ ...|.-. .|..+.++|++ ++..||++|+.+-+|||+| ...||
T Consensus 646 ~~g~~LVLFtS~~~l~~v~~~l~~~~~-~~-l~Qg~~~--~~~~l~~~F~~--~~~~vLlG~~sFwEGVD~p~~~~~~vi 719 (820)
T PRK07246 646 LQQPILVLFNSKKHLLAVSDLLDQWQV-SH-LAQEKNG--TAYNIKKRFDR--GEQQILLGLGSFWEGVDFVQADRMIEV 719 (820)
T ss_pred cCCCEEEEECcHHHHHHHHHHHhhcCC-cE-EEeCCCc--cHHHHHHHHHc--CCCeEEEecchhhCCCCCCCCCeEEEE
Confidence 467777777 89999999999976532 33 4444222 24568999998 7778999999999999994 55677
Q ss_pred EcccccccCc---------------------cccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC
Q 010836 314 FSTMKKFDGV---------------------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 314 ~~~~~~~~~~---------------------~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~ 358 (499)
...++.-.|. ..-|.....+.|-+||.=|... ..|.+++++..
T Consensus 720 I~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~--D~Gvv~ilD~R 783 (820)
T PRK07246 720 ITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRRED--QKSAVLILDRR 783 (820)
T ss_pred EecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCC--CcEEEEEECCc
Confidence 7776643221 0123345679999999999875 45888888765
No 142
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.17 E-value=3.9e-09 Score=109.26 Aligned_cols=111 Identities=23% Similarity=0.301 Sum_probs=81.9
Q ss_pred CCCCEEEEeeH--HHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccccc-cccEEEE
Q 010836 238 QTGDCIVTFSR--HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIF 314 (499)
Q Consensus 238 ~~~~~iv~~s~--~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidi-pv~~VI~ 314 (499)
..|+.|+.||+ ....-|...|.-.+. ...-+.|+..-.+|+.+++.|.....-.-+|++|-+.+-|||+ -.+.||.
T Consensus 775 ~~G~RVLiFSQFTqmLDILE~~L~~l~~-~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIi 853 (941)
T KOG0389|consen 775 KKGDRVLIFSQFTQMLDILEVVLDTLGY-KYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVII 853 (941)
T ss_pred hcCCEEEEeeHHHHHHHHHHHHHHhcCc-eEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceEEE
Confidence 45677777752 333334444555554 8889999999999999999999855556789999999999999 5999999
Q ss_pred cccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 315 ~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
+|... ++-.=.|.--||.|.|+. ..-.||.+...+
T Consensus 854 hD~dF---------NP~dD~QAEDRcHRvGQt-kpVtV~rLItk~ 888 (941)
T KOG0389|consen 854 HDIDF---------NPYDDKQAEDRCHRVGQT-KPVTVYRLITKS 888 (941)
T ss_pred eecCC---------CCcccchhHHHHHhhCCc-ceeEEEEEEecC
Confidence 98842 445556777778887775 335677776655
No 143
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.08 E-value=2.1e-09 Score=116.39 Aligned_cols=93 Identities=16% Similarity=0.148 Sum_probs=72.0
Q ss_pred EEEeeHHHHHHHHHHHHHcC-----CCeEEEEcCCCCHHHHHHHHHHhc----------------------C--CCCCcc
Q 010836 243 IVTFSRHAIYRLKKAIESRG-----KHLCSIVYGSLPPETRTRQATRFN----------------------D--ASSEFD 293 (499)
Q Consensus 243 iv~~s~~~~~~l~~~L~~~~-----~~~v~~~hg~l~~~~R~~~~~~f~----------------------~--~~g~~~ 293 (499)
|.+.+.+.+.++++.|.... ...++++|+..+...|..+++... + ..+...
T Consensus 761 iR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~ 840 (1110)
T TIGR02562 761 IRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLF 840 (1110)
T ss_pred EEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCe
Confidence 33447788888888776542 235889999999988877765531 1 124678
Q ss_pred EEEecchhhccccccccEEEEcccccccCccccccChhhHHhhhccCCCCCCC
Q 010836 294 VLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (499)
Q Consensus 294 iLvaT~~~~~Gidipv~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~ 346 (499)
|+|||+++|.|+|++.+.+|-. +.+..+.+||+||+.|.|..
T Consensus 841 i~v~Tqv~E~g~D~dfd~~~~~-----------~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 841 IVLATPVEEVGRDHDYDWAIAD-----------PSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred EEEEeeeEEEEecccCCeeeec-----------cCcHHHHHHHhhcccccccC
Confidence 9999999999999999998864 55889999999999999874
No 144
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.07 E-value=2.9e-10 Score=102.93 Aligned_cols=111 Identities=15% Similarity=0.102 Sum_probs=71.8
Q ss_pred CCCchhc-cchHHHhc-----CCceEEEEccCCccHHHHHHHHHHc-CCCEEEEccHHHHHHHHHHHHHhcCCceeEeeC
Q 010836 61 DLTRPHT-WYPLARKK-----VRKVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITG 133 (499)
Q Consensus 61 ~l~~~q~-~~~~~~~~-----~~~~vli~apTGsGKT~~~l~~l~~-~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g 133 (499)
.|++.|. ++..+... ..+.+++.+|||||||.+++..+.+ ..++++++|+..|+.|+.+.+..++.......+
T Consensus 3 ~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~~~ 82 (184)
T PF04851_consen 3 KLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGSEKYNFFE 82 (184)
T ss_dssp EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHSTTSEEEEE
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 3567777 66666432 3689999999999999998643322 228999999999999999999644222111100
Q ss_pred ----------------C-----eecccCCCceEEEceeecc-------------------ccCCccEEEEecCcccCC
Q 010836 134 ----------------Q-----EREEVDGAKHRAVTVEMAD-------------------VVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 134 ----------------~-----~~~~~~~~~~iv~T~e~~~-------------------~l~~~~~iViDEah~~~~ 171 (499)
. .........++++|...+. .....+++|+||||+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~ 160 (184)
T PF04851_consen 83 KSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPS 160 (184)
T ss_dssp --GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHH
T ss_pred cccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCC
Confidence 0 0011224566677763321 125689999999999864
No 145
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.06 E-value=3.2e-09 Score=114.26 Aligned_cols=109 Identities=26% Similarity=0.347 Sum_probs=82.4
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcCCCeEE--EEcCCCCHHHHHHHHHHhcCCCCCccE-EEecchhhccccc-cccEEE
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCS--IVYGSLPPETRTRQATRFNDASSEFDV-LVASDAIGMGLNL-NISRII 313 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~--~~hg~l~~~~R~~~~~~f~~~~g~~~i-LvaT~~~~~Gidi-pv~~VI 313 (499)
..+++||| -+....-+.+.|-+.....+. .+.|+.++.+|.++.++|++++ .++| |++|-+.+-|+|+ ..|.||
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~Dp-tIDvLlLTThVGGLGLNLTGADTVV 1418 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDP-TIDVLLLTTHVGGLGLNLTGADTVV 1418 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCC-ceeEEEEeeeccccccccCCCceEE
Confidence 34577788 466666666777655443555 7789999999999999999932 4555 5677799999999 799999
Q ss_pred EcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC
Q 010836 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 314 ~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~ 358 (499)
+++. .+++..=+|.+-||.|-|++ ..-.||++-..
T Consensus 1419 FvEH---------DWNPMrDLQAMDRAHRIGQK-rvVNVyRlItr 1453 (1549)
T KOG0392|consen 1419 FVEH---------DWNPMRDLQAMDRAHRIGQK-RVVNVYRLITR 1453 (1549)
T ss_pred EEec---------CCCchhhHHHHHHHHhhcCc-eeeeeeeehhc
Confidence 9987 45666669999999999996 33445666544
No 146
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.05 E-value=1.3e-08 Score=108.40 Aligned_cols=93 Identities=13% Similarity=0.193 Sum_probs=66.6
Q ss_pred CCC-EEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCC-CccEEEecchhhcccccccc-----
Q 010836 239 TGD-CIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASS-EFDVLVASDAIGMGLNLNIS----- 310 (499)
Q Consensus 239 ~~~-~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g-~~~iLvaT~~~~~Gidipv~----- 310 (499)
.|+ ++|.+ |....+.+++.|.+.+. ...++++.-...+ ..++. +. | .-.|.|||++++||-||-..
T Consensus 425 ~gqPVLVgT~SIe~SE~ls~~L~~~gi-~h~vLNAk~~e~E-A~IIa--~A--G~~GaVTIATNMAGRGTDI~Lg~~V~~ 498 (925)
T PRK12903 425 KGQPILIGTAQVEDSETLHELLLEANI-PHTVLNAKQNARE-AEIIA--KA--GQKGAITIATNMAGRGTDIKLSKEVLE 498 (925)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHCCC-CceeecccchhhH-HHHHH--hC--CCCCeEEEecccccCCcCccCchhHHH
Confidence 444 55555 89999999999998877 6777777533222 22222 22 3 33699999999999999543
Q ss_pred ----EEEEcccccccCccccccChhhHHhhhccCCCCCCC
Q 010836 311 ----RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (499)
Q Consensus 311 ----~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~ 346 (499)
+||.... +-|..-=.|..||+||.|..
T Consensus 499 ~GGLhVIgTer---------heSrRIDnQLrGRaGRQGDp 529 (925)
T PRK12903 499 LGGLYVLGTDK---------AESRRIDNQLRGRSGRQGDV 529 (925)
T ss_pred cCCcEEEeccc---------CchHHHHHHHhcccccCCCC
Confidence 7776654 55676677999999999987
No 147
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.02 E-value=2.6e-08 Score=106.55 Aligned_cols=106 Identities=16% Similarity=0.010 Sum_probs=73.9
Q ss_pred CCchhccchHHHhcCCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHh----cCCceeEeeC
Q 010836 62 LTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNK----ANVSCDLITG 133 (499)
Q Consensus 62 l~~~q~~~~~~~~~~~~~vli~apTGsGKT~~~l~~l----~~~~~~l~l~P~r~La~q~~~~l~~----~g~~~~~~~g 133 (499)
+.++|-.--.+ + ++.-+..+.||.|||+++..+. +.+..+-++.++..||..-++.+.. +|++|+++.+
T Consensus 77 ~ydvQlig~l~--L-~~G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg~i~~ 153 (870)
T CHL00122 77 HFDVQLIGGLV--L-NDGKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVGLIQE 153 (870)
T ss_pred CCchHhhhhHh--h-cCCccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCCceeeeCC
Confidence 55666621122 1 3445899999999999973222 3466778889999999988887664 6999999877
Q ss_pred Ceecc----cCCCceEEEceeec--cc-------------cCCccEEEEecCcccC
Q 010836 134 QEREE----VDGAKHRAVTVEMA--DV-------------VSDYDCAVIDEIQMLG 170 (499)
Q Consensus 134 ~~~~~----~~~~~~iv~T~e~~--~~-------------l~~~~~iViDEah~~~ 170 (499)
+.... .-.++++++|..-+ |. .+.+.+.||||+|.++
T Consensus 154 ~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 154 GMSSEERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred CCChHHHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 54432 23578888887322 11 2678999999999875
No 148
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=98.86 E-value=3.2e-09 Score=89.36 Aligned_cols=93 Identities=17% Similarity=0.225 Sum_probs=58.5
Q ss_pred CCceEEEEccCCccHHHHHH-----HHHHcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCe-ecccCCCceEEEce
Q 010836 76 VRKVILHVGPTNSGKTHQAL-----SRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQE-REEVDGAKHRAVTV 149 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l-----~~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~-~~~~~~~~~iv~T~ 149 (499)
+++..++-..+|+|||.-.+ +.+.+.+++|++.|||.++.++++.++...+.+. +... .....+..+-++|.
T Consensus 3 kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~~~~~~~--t~~~~~~~~g~~~i~vMc~ 80 (148)
T PF07652_consen 3 KGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKGLPVRFH--TNARMRTHFGSSIIDVMCH 80 (148)
T ss_dssp TTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTTSSEEEE--STTSS----SSSSEEEEEH
T ss_pred CCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhcCCcccC--ceeeeccccCCCccccccc
Confidence 47788999999999999754 3555778999999999999999999986543332 2211 11222344455555
Q ss_pred eec-----c--ccCCccEEEEecCcccC
Q 010836 150 EMA-----D--VVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 150 e~~-----~--~l~~~~~iViDEah~~~ 170 (499)
..+ + ...++++||+||||...
T Consensus 81 at~~~~~~~p~~~~~yd~II~DEcH~~D 108 (148)
T PF07652_consen 81 ATYGHFLLNPCRLKNYDVIIMDECHFTD 108 (148)
T ss_dssp HHHHHHHHTSSCTTS-SEEEECTTT--S
T ss_pred HHHHHHhcCcccccCccEEEEeccccCC
Confidence 221 1 24789999999999864
No 149
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.83 E-value=4.1e-08 Score=96.77 Aligned_cols=87 Identities=23% Similarity=0.216 Sum_probs=71.5
Q ss_pred CCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccccc-cccEEEEcccccccCccccccChhhHHhhhccCC
Q 010836 263 KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAG 341 (499)
Q Consensus 263 ~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidi-pv~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRag 341 (499)
+..++-+-|+|++..|...++.|++...-.-.||+-.+.+.-+|+ -.+.|+..|+ |++++--+|...|..
T Consensus 662 GfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDP---------WWNpaVe~Qa~DRiH 732 (791)
T KOG1002|consen 662 GFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDP---------WWNPAVEWQAQDRIH 732 (791)
T ss_pred CceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecc---------cccHHHHhhhhhhHH
Confidence 348999999999999999999999854455678888899999999 4999999998 899999999999998
Q ss_pred CCCCCCCcEEEEEEcCCC
Q 010836 342 RYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 342 R~g~~~~~g~~~~~~~~~ 359 (499)
|.|+. ..-.++.+.-++
T Consensus 733 RIGQ~-rPvkvvrf~iEn 749 (791)
T KOG1002|consen 733 RIGQY-RPVKVVRFCIEN 749 (791)
T ss_pred hhcCc-cceeEEEeehhc
Confidence 88874 335566665544
No 150
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.79 E-value=6.2e-07 Score=96.18 Aligned_cols=91 Identities=19% Similarity=0.066 Sum_probs=67.0
Q ss_pred EEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHH----hcCCceeEeeCCeec----ccCCCceEEE
Q 010836 80 ILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLN----KANVSCDLITGQERE----EVDGAKHRAV 147 (499)
Q Consensus 80 vli~apTGsGKT~~~l~~l----~~~~~~l~l~P~r~La~q~~~~l~----~~g~~~~~~~g~~~~----~~~~~~~iv~ 147 (499)
-+..+.||-|||+++..+. +.++.+-++.+..-||..=++.+. -+|++|+++.++... ..-.++++++
T Consensus 101 ~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~err~aY~~DItYg 180 (939)
T PRK12902 101 QIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPEERKKNYACDITYA 180 (939)
T ss_pred ceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChHHHHHhcCCCeEEe
Confidence 3899999999999974322 345677888999999887776665 369999998765432 2236789999
Q ss_pred ceeec--cc-------------cCCccEEEEecCcccC
Q 010836 148 TVEMA--DV-------------VSDYDCAVIDEIQMLG 170 (499)
Q Consensus 148 T~e~~--~~-------------l~~~~~iViDEah~~~ 170 (499)
|..-+ |. ...+.+.||||+|.++
T Consensus 181 Tn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 181 TNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred cCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 98333 11 2778999999999875
No 151
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.48 E-value=6.9e-06 Score=89.30 Aligned_cols=94 Identities=22% Similarity=0.257 Sum_probs=63.9
Q ss_pred CCC-EEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccccc------
Q 010836 239 TGD-CIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNIS------ 310 (499)
Q Consensus 239 ~~~-~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidipv~------ 310 (499)
.|+ ++|-. |....+.+++.|...+. ..-++++.....+-.-+.+.=+. | .|-|||++++||-||-..
T Consensus 627 ~GrPVLVGT~SVe~SE~lS~~L~~~gI-~H~VLNAK~h~~EAeIVA~AG~~--G--aVTIATNMAGRGTDIkLg~~V~e~ 701 (1112)
T PRK12901 627 AGRPVLVGTTSVEISELLSRMLKMRKI-PHNVLNAKLHQKEAEIVAEAGQP--G--TVTIATNMAGRGTDIKLSPEVKAA 701 (1112)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHcCC-cHHHhhccchhhHHHHHHhcCCC--C--cEEEeccCcCCCcCcccchhhHHc
Confidence 444 44444 78888889999988765 55556665433332223333222 3 599999999999999422
Q ss_pred ---EEEEcccccccCccccccChhhHHhhhccCCCCCCC
Q 010836 311 ---RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK 346 (499)
Q Consensus 311 ---~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~ 346 (499)
+||-... +.|..--.|-.||+||.|..
T Consensus 702 GGL~VIgTer---------heSrRID~QLrGRaGRQGDP 731 (1112)
T PRK12901 702 GGLAIIGTER---------HESRRVDRQLRGRAGRQGDP 731 (1112)
T ss_pred CCCEEEEccC---------CCcHHHHHHHhcccccCCCC
Confidence 4555433 66888899999999999987
No 152
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.47 E-value=8.9e-07 Score=86.72 Aligned_cols=118 Identities=17% Similarity=0.133 Sum_probs=75.9
Q ss_pred cCCceEEEEccCCccHHHHHHHHHH---cC------CCEEEEccHHHHHHHHHHHHHhc----CCceeEeeCCe------
Q 010836 75 KVRKVILHVGPTNSGKTHQALSRLE---SS------SSGIYCGPLRLLAWEVAKRLNKA----NVSCDLITGQE------ 135 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l~~l~---~~------~~~l~l~P~r~La~q~~~~l~~~----g~~~~~~~g~~------ 135 (499)
...+..++..++|+|||.+++..+. .. +.+||++|. .+..++...+.++ ..++....|..
T Consensus 23 ~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~~~~v~~~~~~~~~~~~~ 101 (299)
T PF00176_consen 23 SPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPDSLRVIIYDGDSERRRLS 101 (299)
T ss_dssp TTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-TS-EEEESSSCHHHHTT
T ss_pred cCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcccccccccccccccccccccccc
Confidence 3467899999999999999765443 22 148999999 7778888888865 34566666665
Q ss_pred ecccCCCceEEEceeecc-----c----c--CCccEEEEecCcccCCCCCChhHHHHHhccccccceEeec
Q 010836 136 REEVDGAKHRAVTVEMAD-----V----V--SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGD 195 (499)
Q Consensus 136 ~~~~~~~~~iv~T~e~~~-----~----l--~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~~~~~~ 195 (499)
........++++|++.+. . + .+++++|+||+|.+.+. .......+..+.+....++..
T Consensus 102 ~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~--~s~~~~~l~~l~~~~~~lLSg 170 (299)
T PF00176_consen 102 KNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK--DSKRYKALRKLRARYRWLLSG 170 (299)
T ss_dssp SSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT--TSHHHHHHHCCCECEEEEE-S
T ss_pred ccccccceeeeccccccccccccccccccccccceeEEEecccccccc--cccccccccccccceEEeecc
Confidence 233446778888886665 1 1 45999999999999633 555566666666444444333
No 153
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=98.45 E-value=8.6e-07 Score=94.53 Aligned_cols=107 Identities=23% Similarity=0.216 Sum_probs=79.3
Q ss_pred CCEEEEeeHHHHHH-HHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCC-ccEEEecchhhcccccc-ccEEEEcc
Q 010836 240 GDCIVTFSRHAIYR-LKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSE-FDVLVASDAIGMGLNLN-ISRIIFST 316 (499)
Q Consensus 240 ~~~iv~~s~~~~~~-l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~-~~iLvaT~~~~~Gidip-v~~VI~~~ 316 (499)
..+++||....+.. +..+|.- ...+..-+.|....++|-..++.|+.|+.. ..+|.+|-+.+.|+|+. .+.||.+|
T Consensus 727 HRVLlF~qMTrlmdimEdyL~~-~~~kYlRLDG~TK~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifd 805 (1157)
T KOG0386|consen 727 HRVLLFSQMTRLMDILEDYLQI-REYKYLRLDGQTKVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFD 805 (1157)
T ss_pred cchhhHHHHHHHHHHHHHHHhh-hhhheeeecCCcchhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEec
Confidence 34455554333333 3333332 233788889999999999999999996554 46899999999999996 99999998
Q ss_pred cccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcC
Q 010836 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (499)
Q Consensus 317 ~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~ 357 (499)
. .+++....|+--||.|.|.. ....++.+..
T Consensus 806 s---------dwnp~~d~qaqdrahrigq~-~evRv~rl~t 836 (1157)
T KOG0386|consen 806 S---------DWNPHQDLQAQDRAHRIGQK-KEVRVLRLIT 836 (1157)
T ss_pred C---------CCCchhHHHHHHHHHHhhch-hheeeeeeeh
Confidence 8 56889999999999999986 4445555543
No 154
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.42 E-value=2.8e-06 Score=95.06 Aligned_cols=70 Identities=16% Similarity=0.202 Sum_probs=55.8
Q ss_pred HHHHHHhcCCCCCccEEEecchhhccccccccEEEEcccccccCccccccChhhHHhhhccCCCCCCC-CCcEEEEEEcC
Q 010836 279 TRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-FPVGEVTCLDS 357 (499)
Q Consensus 279 ~~~~~~f~~~~g~~~iLvaT~~~~~Gidipv~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~-~~~g~~~~~~~ 357 (499)
.....+|..+....++||-+|++-+|+|-|+-+++..|- |+---..+|-+-|+.|.-+. +..|.++.+..
T Consensus 581 ~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYvDK---------~Lk~H~L~QAisRtNR~~~~~K~~G~IVDf~g 651 (962)
T COG0610 581 KDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYVDK---------PLKYHNLIQAISRTNRVFPGKKKFGLIVDFRG 651 (962)
T ss_pred hhhhhhhcCcCCCCCEEEEEccccccCCccccceEEecc---------ccccchHHHHHHHhccCCCCCCCCcEEEECcc
Confidence 344455544457899999999999999999777777666 66777899999999998776 57799887766
No 155
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=98.39 E-value=7.1e-06 Score=84.64 Aligned_cols=91 Identities=23% Similarity=0.301 Sum_probs=71.7
Q ss_pred HHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCC-CccEEEecchhhccccc-cccEEEEcccccccCccccccChhh
Q 010836 255 KKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASS-EFDVLVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPE 332 (499)
Q Consensus 255 ~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g-~~~iLvaT~~~~~Gidi-pv~~VI~~~~~~~~~~~~~p~s~~~ 332 (499)
...|.+.+. ....+||....++|..+++.|+...| ..-.|++-.+.+.|+|+ ...++|..|+ -++++-
T Consensus 763 ~~hi~~~g~-~y~si~Gqv~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDl---------HWNPaL 832 (901)
T KOG4439|consen 763 RKHIQKGGH-IYTSITGQVLVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDL---------HWNPAL 832 (901)
T ss_pred HHHHhhCCe-eeeeecCccchhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEec---------ccCHHH
Confidence 344444444 78889999999999999999998555 44556677888999999 5999999999 668999
Q ss_pred HHhhhccCCCCCCCCCcEEEEEEc
Q 010836 333 VKQIAGRAGRYGSKFPVGEVTCLD 356 (499)
Q Consensus 333 ~~Qr~GRagR~g~~~~~g~~~~~~ 356 (499)
-.|.+-|.-|.|++ ..-+++.+.
T Consensus 833 EqQAcDRIYR~GQk-K~V~IhR~~ 855 (901)
T KOG4439|consen 833 EQQACDRIYRMGQK-KDVFIHRLM 855 (901)
T ss_pred HHHHHHHHHHhccc-CceEEEEEE
Confidence 99999999999986 334444443
No 156
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=98.17 E-value=2e-05 Score=80.91 Aligned_cols=75 Identities=16% Similarity=0.248 Sum_probs=62.8
Q ss_pred ccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHH----HHHH-cCCCEEEEccHHHHHHHHHHHHHhcCCce
Q 010836 55 KKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL----SRLE-SSSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (499)
Q Consensus 55 ~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l----~~l~-~~~~~l~l~P~r~La~q~~~~l~~~g~~~ 128 (499)
..+++.++..-|. +...+ +++...+|+||+|+|||.+.. +.+. .++.+|+|+|.-..+.|+++.+.+.|+++
T Consensus 404 s~~~lpkLN~SQ~~AV~~V--L~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~tgLKV 481 (935)
T KOG1802|consen 404 SVPNLPKLNASQSNAVKHV--LQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKTGLKV 481 (935)
T ss_pred cCCCchhhchHHHHHHHHH--HcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhcCceE
Confidence 4458999999999 99988 779999999999999999842 2222 45789999999999999999999888876
Q ss_pred eEe
Q 010836 129 DLI 131 (499)
Q Consensus 129 ~~~ 131 (499)
.-+
T Consensus 482 vRl 484 (935)
T KOG1802|consen 482 VRL 484 (935)
T ss_pred eee
Confidence 544
No 157
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=98.16 E-value=7.7e-05 Score=77.18 Aligned_cols=106 Identities=24% Similarity=0.265 Sum_probs=81.9
Q ss_pred CEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccccc-cccEEEEcccc
Q 010836 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFSTMK 318 (499)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidi-pv~~VI~~~~~ 318 (499)
.++++| -.+...-+.++|...+. ...-+.|+....+|..++++|+. +...-.|++|-+.+-|||+ -.+.||+|+.
T Consensus 1046 RvL~yfQMTkM~dl~EdYl~yr~Y-~ylRLDGSsk~~dRrd~vrDwQ~-sdiFvFLLSTRAGGLGINLTAADTViFYdS- 1122 (1185)
T KOG0388|consen 1046 RVLMYFQMTKMIDLIEDYLVYRGY-TYLRLDGSSKASDRRDVVRDWQA-SDIFVFLLSTRAGGLGINLTAADTVIFYDS- 1122 (1185)
T ss_pred eEEehhHHHHHHHHHHHHHHhhcc-ceEEecCcchhhHHHHHHhhccC-CceEEEEEecccCcccccccccceEEEecC-
Confidence 345555 35556666667766655 78889999999999999999998 4566789999999999999 5999999988
Q ss_pred cccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC
Q 010836 319 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 319 ~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~ 358 (499)
.+++..=.|...||.|.|+. ..-.||.+...
T Consensus 1123 --------DWNPT~D~QAMDRAHRLGQT-rdvtvyrl~~r 1153 (1185)
T KOG0388|consen 1123 --------DWNPTADQQAMDRAHRLGQT-RDVTVYRLITR 1153 (1185)
T ss_pred --------CCCcchhhHHHHHHHhccCc-cceeeeeeccc
Confidence 55666677888889898875 33456666543
No 158
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=98.14 E-value=8.9e-07 Score=94.91 Aligned_cols=151 Identities=21% Similarity=0.187 Sum_probs=109.7
Q ss_pred CCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH------cCCCEEEEccHHHHHHHHHHHHHhc----CCce
Q 010836 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE------SSSSGIYCGPLRLLAWEVAKRLNKA----NVSC 128 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~------~~~~~l~l~P~r~La~q~~~~l~~~----g~~~ 128 (499)
..+.+.|. .+-... .-..++++-+|||+|||.+|-.++. ...+++|++|..+|+.+-.+.+.+. |+++
T Consensus 926 ~~fn~~q~~if~~~y-~td~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ 1004 (1230)
T KOG0952|consen 926 KYFNPIQTQIFHCLY-HTDLNFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKV 1004 (1230)
T ss_pred cccCCccceEEEEEe-ecchhhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCcee
Confidence 34555666 333332 3367789999999999999855443 2468999999999999888877642 7778
Q ss_pred eEeeCCeecc---cCCCceEEEceeecccc----------CCccEEEEecCcccCCCCCChhHHHHHhcc------cccc
Q 010836 129 DLITGQEREE---VDGAKHRAVTVEMADVV----------SDYDCAVIDEIQMLGCKTRGFSFTRALLGI------CANE 189 (499)
Q Consensus 129 ~~~~g~~~~~---~~~~~~iv~T~e~~~~l----------~~~~~iViDEah~~~~~~~g~~~~~~ll~l------~~~~ 189 (499)
.-.+|+.... ..++.+++.|++.++.. ..++.+|+||.|+..+ +||+.+....... ....
T Consensus 1005 ie~tgd~~pd~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~-~rgPVle~ivsr~n~~s~~t~~~ 1083 (1230)
T KOG0952|consen 1005 IELTGDVTPDVKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE-DRGPVLEVIVSRMNYISSQTEEP 1083 (1230)
T ss_pred EeccCccCCChhheecCceEEcccccccCccccccchhhhccccceeecccccccC-CCcceEEEEeeccccCccccCcc
Confidence 8888876544 34788999999888654 5789999999999886 6777754433332 2456
Q ss_pred ceEeecCCCchHHHHHHHHcCCe
Q 010836 190 LHLCGDPAAVPLIQQILQVTGDD 212 (499)
Q Consensus 190 ~~~~~~~~~~~~~~~l~~~~~~~ 212 (499)
++..+.++.+.+..++..|.+..
T Consensus 1084 vr~~glsta~~na~dla~wl~~~ 1106 (1230)
T KOG0952|consen 1084 VRYLGLSTALANANDLADWLNIK 1106 (1230)
T ss_pred hhhhhHhhhhhccHHHHHHhCCC
Confidence 67778777777778888887653
No 159
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.11 E-value=1.2e-05 Score=75.62 Aligned_cols=60 Identities=22% Similarity=0.269 Sum_probs=44.3
Q ss_pred CCchhc-cchHHHhcCCce-EEEEccCCccHHHHH---HHHH---------HcCCCEEEEccHHHHHHHHHHHHHh
Q 010836 62 LTRPHT-WYPLARKKVRKV-ILHVGPTNSGKTHQA---LSRL---------ESSSSGIYCGPLRLLAWEVAKRLNK 123 (499)
Q Consensus 62 l~~~q~-~~~~~~~~~~~~-vli~apTGsGKT~~~---l~~l---------~~~~~~l~l~P~r~La~q~~~~l~~ 123 (499)
+++.|. ++..+ +.... .+|.||.|||||... +..+ ..++++++++|+...+.++.+++.+
T Consensus 2 ln~~Q~~Ai~~~--~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSA--LSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHH--CTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHH--HcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 456677 77766 55666 999999999999774 3333 2346789999999999999999887
No 160
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.00 E-value=1.6e-05 Score=72.80 Aligned_cols=124 Identities=22% Similarity=0.229 Sum_probs=67.7
Q ss_pred CCchhc-cchHHHhcCCceEEEEccCCccHHHHH---HHHHHc-CCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCee
Q 010836 62 LTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA---LSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQER 136 (499)
Q Consensus 62 l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~---l~~l~~-~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~ 136 (499)
|++-|. ++..+....++.+++.||.|+|||+.. ...+.. +.++++++||...+..+.+.. |+.+.-++....
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~---~~~a~Ti~~~l~ 78 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKT---GIEAQTIHSFLY 78 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHH---TS-EEEHHHHTT
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhh---CcchhhHHHHHh
Confidence 566777 777775555678999999999999984 223333 458899999999988877663 333332221100
Q ss_pred cccCCCceEEEceeeccccCCccEEEEecCcccCCCCCChhHHHHHhcccc--ccceEeecCCC
Q 010836 137 EEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA--NELHLCGDPAA 198 (499)
Q Consensus 137 ~~~~~~~~iv~T~e~~~~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~--~~~~~~~~~~~ 198 (499)
..... ..+.-..+.+.+++||||+-++... .+...+..... ..+.++|+..-
T Consensus 79 ~~~~~------~~~~~~~~~~~~vliVDEasmv~~~----~~~~ll~~~~~~~~klilvGD~~Q 132 (196)
T PF13604_consen 79 RIPNG------DDEGRPELPKKDVLIVDEASMVDSR----QLARLLRLAKKSGAKLILVGDPNQ 132 (196)
T ss_dssp EECCE------ECCSSCC-TSTSEEEESSGGG-BHH----HHHHHHHHS-T-T-EEEEEE-TTS
T ss_pred cCCcc------cccccccCCcccEEEEecccccCHH----HHHHHHHHHHhcCCEEEEECCcch
Confidence 00000 0000000566789999999998632 22233322322 35666777653
No 161
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.99 E-value=2.1e-05 Score=88.50 Aligned_cols=117 Identities=17% Similarity=0.200 Sum_probs=84.3
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHHcCCC-eEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc---ccEE
Q 010836 238 QTGDCIVTF-SRHAIYRLKKAIESRGKH-LCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---ISRI 312 (499)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~-~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip---v~~V 312 (499)
.+|.++|+| |.+..+.+++.|...... ...++.-+++...|.++++.|++ ++-.||++|..+.+|||+| +++|
T Consensus 751 ~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~--~~~~iLlG~~sFwEGVD~pg~~l~~v 828 (928)
T PRK08074 751 TKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQ--FDKAILLGTSSFWEGIDIPGDELSCL 828 (928)
T ss_pred CCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHh--cCCeEEEecCcccCccccCCCceEEE
Confidence 456677777 899999999998764321 23333334443456789999998 7778999999999999996 7899
Q ss_pred EEcccccccCc---------------------cccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC
Q 010836 313 IFSTMKKFDGV---------------------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 313 I~~~~~~~~~~---------------------~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~ 358 (499)
|...++.-.|. ..-|.....+.|-+||.=|... ..|.+++++..
T Consensus 829 iI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~--D~G~v~ilD~R 893 (928)
T PRK08074 829 VIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTET--DRGTVFVLDRR 893 (928)
T ss_pred EEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCC--ceEEEEEecCc
Confidence 98887753222 0123345678999999999886 45888888765
No 162
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.82 E-value=4.3e-05 Score=78.16 Aligned_cols=62 Identities=18% Similarity=0.347 Sum_probs=48.9
Q ss_pred CCCCchhc-cchHHHhcCCceEEEEccCCccHHHHH----HHHHHcCCCEEEEccHHHHHHHHHHHHH
Q 010836 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA----LSRLESSSSGIYCGPLRLLAWEVAKRLN 122 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~----l~~l~~~~~~l~l~P~r~La~q~~~~l~ 122 (499)
..+...|. ++..+.+ .....++.||+|+|||... .+.+.+++++++|+||.+.+..+.+++.
T Consensus 184 ~~ln~SQk~Av~~~~~-~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 184 KNLNSSQKAAVSFAIN-NKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred ccccHHHHHHHHHHhc-cCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 33556666 6666633 2377889999999999984 5677788999999999999999999865
No 163
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.80 E-value=0.00014 Score=78.19 Aligned_cols=67 Identities=16% Similarity=0.257 Sum_probs=51.8
Q ss_pred CCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHH----HHHHcCCCEEEEccHHHHHHHHHHHHHhcCCc
Q 010836 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL----SRLESSSSGIYCGPLRLLAWEVAKRLNKANVS 127 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l----~~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~ 127 (499)
..++..|. ++..+. .....++|.||+|+|||..+. +.+..+.++++++||...+.++.+++.+.+++
T Consensus 156 ~~ln~~Q~~Av~~~l-~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~~~~ 227 (637)
T TIGR00376 156 PNLNESQKEAVSFAL-SSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALCDQK 227 (637)
T ss_pred CCCCHHHHHHHHHHh-cCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhCCCc
Confidence 45677888 777663 233788999999999998853 34455678999999999999999999875443
No 164
>PF13245 AAA_19: Part of AAA domain
Probab=97.76 E-value=7.4e-05 Score=56.76 Aligned_cols=45 Identities=27% Similarity=0.358 Sum_probs=36.4
Q ss_pred CceEEEEccCCccHHHHHHH---HHHc-----CCCEEEEccHHHHHHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALS---RLES-----SSSGIYCGPLRLLAWEVAKRL 121 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~---~l~~-----~~~~l~l~P~r~La~q~~~~l 121 (499)
+..++|.||.|||||..+.. .+.. +.++++++|++..+.++.+++
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 66777899999999977532 3332 567899999999999999998
No 165
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=97.75 E-value=5.5e-05 Score=80.37 Aligned_cols=118 Identities=15% Similarity=0.131 Sum_probs=78.3
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCC--CCCccEEEecchhhccccc-------
Q 010836 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDA--SSEFDVLVASDAIGMGLNL------- 307 (499)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~--~g~~~iLvaT~~~~~Gidi------- 307 (499)
..|..+|.| |.+..+.+++.|..... ....+.|..++ +...+++|++. .+...||++|+.+-+|||+
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l~-~~~l~qg~~~~--~~~l~~~f~~~~~~~~~~vL~gt~sfweGvDv~~~~~~p 545 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGIP-AEIVIQSEKNR--LASAEQQFLALYANGIQPVLIAAGGAWTGIDLTHKPVSP 545 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhcC-CCEEEeCCCcc--HHHHHHHHHHhhcCCCCcEEEeCCccccccccCCccCCC
Confidence 355566655 78888888888876544 34555665432 34677788761 1357899999999999999
Q ss_pred -c---ccEEEEcccccc--cCc--------------cccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC
Q 010836 308 -N---ISRIIFSTMKKF--DGV--------------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 308 -p---v~~VI~~~~~~~--~~~--------------~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~ 358 (499)
| +++||+...+.- |+. ...|...-.+.|-+||.=|...+-..|.+.++++.
T Consensus 546 ~~G~~Ls~ViI~kLPF~~~dp~a~~~~~~~~g~~~f~~~p~a~i~lkQg~GRLIR~~~D~~~G~i~ilD~R 616 (636)
T TIGR03117 546 DKDNLLTDLIITCAPFGLNRSLSMLKRIRKTSVRPWEIINESLMMLRQGLGRLVRHPDMPQNRRIHMLDGR 616 (636)
T ss_pred CCCCcccEEEEEeCCCCcCChHHHHHHHHhcCCChHhhhHHHHHHHHHhcCceeecCCCcCceEEEEEeCC
Confidence 3 888887777631 110 11233455678889998888763236888888766
No 166
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.71 E-value=3.9e-05 Score=76.99 Aligned_cols=82 Identities=26% Similarity=0.250 Sum_probs=56.2
Q ss_pred ceEEEEccCCccHHHHHHHHHH------cCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEce--
Q 010836 78 KVILHVGPTNSGKTHQALSRLE------SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTV-- 149 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l~~l~------~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~-- 149 (499)
+.++|.|..|||||++++..+. .+.+++++++...|...+.+.+.+.... . .....+..+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~------~------~~~~~~~~~~~ 69 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP------K------LKKSDFRKPTS 69 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhccc------c------hhhhhhhhhHH
Confidence 5789999999999999854433 3467899999999999988888754200 0 000001111
Q ss_pred ------eeccccCCccEEEEecCcccCC
Q 010836 150 ------EMADVVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 150 ------e~~~~l~~~~~iViDEah~~~~ 171 (499)
........+++|||||||.+..
T Consensus 70 ~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 70 FINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred HHhhcccccccCCcCCEEEEehhHhhhh
Confidence 1122347899999999999986
No 167
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.59 E-value=0.00016 Score=64.24 Aligned_cols=117 Identities=18% Similarity=0.227 Sum_probs=76.1
Q ss_pred ccCCCCEEEEe-eHHHHHHHHHHHHHcCC-CeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecc--hhhcccccc---
Q 010836 236 NIQTGDCIVTF-SRHAIYRLKKAIESRGK-HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD--AIGMGLNLN--- 308 (499)
Q Consensus 236 ~~~~~~~iv~~-s~~~~~~l~~~L~~~~~-~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~--~~~~Gidip--- 308 (499)
+..++.++||| |.+..+.+.+.+..... ..+.++.. ....+...++.|++ ++-.||+|+. .+..|||+|
T Consensus 6 ~~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~--~~~~il~~v~~g~~~EGiD~~~~~ 81 (167)
T PF13307_consen 6 SAVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKR--GEGAILLAVAGGSFSEGIDFPGDL 81 (167)
T ss_dssp HCCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCC--SSSEEEEEETTSCCGSSS--ECES
T ss_pred hcCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHh--ccCeEEEEEecccEEEeecCCCch
Confidence 34567778888 89999999999876531 01122222 24456789999999 7888999998 999999995
Q ss_pred ccEEEEcccccccCc---------------------cccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC
Q 010836 309 ISRIIFSTMKKFDGV---------------------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 309 v~~VI~~~~~~~~~~---------------------~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~ 358 (499)
++.||..+++.-.+. ...|.......|-+||+-|... ..|.++.++..
T Consensus 82 ~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~--D~g~i~llD~R 150 (167)
T PF13307_consen 82 LRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSED--DYGVIILLDSR 150 (167)
T ss_dssp EEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT---EEEEEEESGG
T ss_pred hheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccC--CcEEEEEEcCc
Confidence 889999888863221 0223345678899999999887 45887777654
No 168
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=97.43 E-value=0.0061 Score=64.20 Aligned_cols=84 Identities=21% Similarity=0.224 Sum_probs=63.2
Q ss_pred EEEEcCCCCHHHHHHHHHHhcCCCCC-ccEEEecchhhccccc-cccEEEEcccccccCccccccChhhHHhhhccCCCC
Q 010836 266 CSIVYGSLPPETRTRQATRFNDASSE-FDVLVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343 (499)
Q Consensus 266 v~~~hg~l~~~~R~~~~~~f~~~~g~-~~iLvaT~~~~~Gidi-pv~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~ 343 (499)
..-+.|..+.++|++.+++|+++.+- .-++++|.+...|||+ ....+|.++. -++..-=.|.+-|+-|.
T Consensus 764 y~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsanr~~ifda---------~wnpchdaqavcRvyrY 834 (1387)
T KOG1016|consen 764 YLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISANRCIIFDA---------CWNPCHDAQAVCRVYRY 834 (1387)
T ss_pred eecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccceEEEEEe---------ecCccccchhhhhhhhh
Confidence 34567888999999999999995544 3789999999999999 6666666655 34566667777888888
Q ss_pred CCCCCcEEEEEEcCCC
Q 010836 344 GSKFPVGEVTCLDSED 359 (499)
Q Consensus 344 g~~~~~g~~~~~~~~~ 359 (499)
|.. ....||.+..+.
T Consensus 835 GQ~-KpcfvYRlVmD~ 849 (1387)
T KOG1016|consen 835 GQQ-KPCFVYRLVMDN 849 (1387)
T ss_pred cCc-CceeEEeehhhh
Confidence 875 446777776543
No 169
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.38 E-value=0.00018 Score=65.50 Aligned_cols=52 Identities=17% Similarity=0.160 Sum_probs=30.8
Q ss_pred CCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHH----HHHHcC--CCEEEEccHHHH
Q 010836 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL----SRLESS--SSGIYCGPLRLL 113 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l----~~l~~~--~~~l~l~P~r~L 113 (499)
.-.+.-|. ++..+. +.+.+++.||.|||||+.++ ..+.++ .+.+|+-|..+.
T Consensus 3 ~p~~~~Q~~~~~al~--~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 3 KPKNEEQKFALDALL--NNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA 61 (205)
T ss_dssp ---SHHHHHHHHHHH--H-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T
T ss_pred cCCCHHHHHHHHHHH--hCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC
Confidence 34566777 666664 68899999999999999974 344443 356777777543
No 170
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=97.35 E-value=0.00066 Score=76.63 Aligned_cols=60 Identities=10% Similarity=0.022 Sum_probs=43.7
Q ss_pred CCCchhc-cch-HHHh-cCCceEEEEccCCccHHHHHHHHHH-----cCCCEEEEccHHHHHHHHHHH
Q 010836 61 DLTRPHT-WYP-LARK-KVRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLAWEVAKR 120 (499)
Q Consensus 61 ~l~~~q~-~~~-~~~~-~~~~~vli~apTGsGKT~~~l~~l~-----~~~~~l~l~P~r~La~q~~~~ 120 (499)
..++.|. ... .... .+++.+++.||||+|||++|+.+.. .+++++|..+|+.|.+|+..+
T Consensus 257 e~R~~Q~~m~~~v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~~~vvIsT~T~~LQ~Ql~~k 324 (928)
T PRK08074 257 EKREGQQEMMKEVYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKKKEEPVVISTYTIQLQQQLLEK 324 (928)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhccCCeEEEEcCCHHHHHHHHHh
Confidence 5666666 222 2212 2578889999999999999965543 456788889999999998653
No 171
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.34 E-value=0.021 Score=58.02 Aligned_cols=109 Identities=12% Similarity=0.104 Sum_probs=75.1
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchh--hccccc-cccEEE
Q 010836 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI--GMGLNL-NISRII 313 (499)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~--~~Gidi-pv~~VI 313 (499)
..+.++||. |--+-..+.+.|++... ..+.+|--.+..+-.+.-..|.. |+.+||+-|-=+ =+=..| .|++||
T Consensus 299 ~~~~~LIfIPSYfDfVRlRN~lk~~~~-sF~~i~EYts~~~isRAR~~F~~--G~~~iLL~TER~HFfrRy~irGi~~vi 375 (442)
T PF06862_consen 299 KMSGTLIFIPSYFDFVRLRNYLKKENI-SFVQISEYTSNSDISRARSQFFH--GRKPILLYTERFHFFRRYRIRGIRHVI 375 (442)
T ss_pred CCCcEEEEecchhhhHHHHHHHHhcCC-eEEEecccCCHHHHHHHHHHHHc--CCceEEEEEhHHhhhhhceecCCcEEE
Confidence 445667777 88888889999986655 78888888888888888889999 999999999532 223456 499999
Q ss_pred EcccccccCccccccChhhHHhhhccCCCCCC---CCCcEEEEEEcCC
Q 010836 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS---KFPVGEVTCLDSE 358 (499)
Q Consensus 314 ~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~---~~~~g~~~~~~~~ 358 (499)
+|+++ ..+.-|...++-.+.... ....+.|.++++.
T Consensus 376 FY~~P---------~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk 414 (442)
T PF06862_consen 376 FYGPP---------ENPQFYSELLNMLDESSGGEVDAADATVTVLYSK 414 (442)
T ss_pred EECCC---------CChhHHHHHHhhhcccccccccccCceEEEEecH
Confidence 99994 444444444433322221 1233677777664
No 172
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.31 E-value=0.00051 Score=66.78 Aligned_cols=66 Identities=18% Similarity=0.114 Sum_probs=46.3
Q ss_pred cCCCCCchhc-cchHHHh--cCCceEEEEccCCccHHHHHHHHH----Hc-CC-----CEEEEccHHHHHHHHHHHHHhc
Q 010836 58 DFTDLTRPHT-WYPLARK--KVRKVILHVGPTNSGKTHQALSRL----ES-SS-----SGIYCGPLRLLAWEVAKRLNKA 124 (499)
Q Consensus 58 ~~~~l~~~q~-~~~~~~~--~~~~~vli~apTGsGKT~~~l~~l----~~-~~-----~~l~l~P~r~La~q~~~~l~~~ 124 (499)
.|. +++.|. ....+.. .+++++++.+|||+|||++++.+. .. .. +++|+++|..+..|....+++.
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 444 366776 2222111 257899999999999999976443 32 22 6899999999999888777764
No 173
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.31 E-value=0.00051 Score=66.78 Aligned_cols=66 Identities=18% Similarity=0.114 Sum_probs=46.3
Q ss_pred cCCCCCchhc-cchHHHh--cCCceEEEEccCCccHHHHHHHHH----Hc-CC-----CEEEEccHHHHHHHHHHHHHhc
Q 010836 58 DFTDLTRPHT-WYPLARK--KVRKVILHVGPTNSGKTHQALSRL----ES-SS-----SGIYCGPLRLLAWEVAKRLNKA 124 (499)
Q Consensus 58 ~~~~l~~~q~-~~~~~~~--~~~~~vli~apTGsGKT~~~l~~l----~~-~~-----~~l~l~P~r~La~q~~~~l~~~ 124 (499)
.|. +++.|. ....+.. .+++++++.+|||+|||++++.+. .. .. +++|+++|..+..|....+++.
T Consensus 6 Py~-~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 6 PYE-PYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCC-CCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 444 366776 2222111 257899999999999999976443 32 22 6899999999999888777764
No 174
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.25 E-value=0.0073 Score=65.32 Aligned_cols=93 Identities=15% Similarity=-0.029 Sum_probs=58.0
Q ss_pred ceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHH----HHHHHHHHhcCCceeEeeCCeec----ccCCCceE
Q 010836 78 KVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLA----WEVAKRLNKANVSCDLITGQERE----EVDGAKHR 145 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l~~l----~~~~~~l~l~P~r~La----~q~~~~l~~~g~~~~~~~g~~~~----~~~~~~~i 145 (499)
..-+.-.-||-|||+++..+. +.++.+.++...-=|| .++..-+.-+|+.+++...+... ..-.+++.
T Consensus 94 ~g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~LGlsvG~~~~~m~~~ek~~aY~~DIt 173 (822)
T COG0653 94 LGDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEFLGLSVGVILAGMSPEEKRAAYACDIT 173 (822)
T ss_pred CCceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcCCceeeccCCCChHHHHHHHhcCce
Confidence 344789999999999974333 2344455554444454 34444455679999987665432 22256777
Q ss_pred EEceeecc---------------ccCCccEEEEecCcccC
Q 010836 146 AVTVEMAD---------------VVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 146 v~T~e~~~---------------~l~~~~~iViDEah~~~ 170 (499)
+.|-.-+. +.....+.|+||++-+.
T Consensus 174 Y~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 174 YGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred eccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 77763221 12568899999998774
No 175
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.17 E-value=0.0012 Score=72.31 Aligned_cols=124 Identities=19% Similarity=0.149 Sum_probs=70.3
Q ss_pred CCCCchhc-cchHHHhcCCceEEEEccCCccHHHHH---HHHHHcC---CCEEEEccHHHHHHHHHHHHHhcCCceeEee
Q 010836 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA---LSRLESS---SSGIYCGPLRLLAWEVAKRLNKANVSCDLIT 132 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~---l~~l~~~---~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~ 132 (499)
..+++.|. ++..+ ..++.+++.|+.|+|||++. +..+... ..+++++||--.|..+.+.. |.+..-++
T Consensus 322 ~~l~~~Q~~Ai~~~--~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~~---g~~a~Tih 396 (720)
T TIGR01448 322 KGLSEEQKQALDTA--IQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRLGEVT---GLTASTIH 396 (720)
T ss_pred CCCCHHHHHHHHHH--HhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHHHHhc---CCccccHH
Confidence 46888888 88877 55889999999999999985 3333333 34667799988887554432 33222111
Q ss_pred CCeecccCCCceEEEceeeccccCCccEEEEecCcccCCCCCChhHHHHHhcccc-ccceEeecCC
Q 010836 133 GQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICA-NELHLCGDPA 197 (499)
Q Consensus 133 g~~~~~~~~~~~iv~T~e~~~~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~-~~~~~~~~~~ 197 (499)
.-........ ...........+++|||||+++.. +.+...+..+.. ..+.++|+..
T Consensus 397 ~lL~~~~~~~-----~~~~~~~~~~~~llIvDEaSMvd~----~~~~~Ll~~~~~~~rlilvGD~~ 453 (720)
T TIGR01448 397 RLLGYGPDTF-----RHNHLEDPIDCDLLIVDESSMMDT----WLALSLLAALPDHARLLLVGDTD 453 (720)
T ss_pred HHhhccCCcc-----chhhhhccccCCEEEEeccccCCH----HHHHHHHHhCCCCCEEEEECccc
Confidence 1100000000 000011124578999999999863 223333333332 3455666654
No 176
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.10 E-value=0.00062 Score=64.70 Aligned_cols=109 Identities=19% Similarity=0.041 Sum_probs=69.9
Q ss_pred CCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHH-HHHH---HcCCCEEEEccHHHHHHHHHHHHH----hcCCcee
Q 010836 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA-LSRL---ESSSSGIYCGPLRLLAWEVAKRLN----KANVSCD 129 (499)
Q Consensus 59 ~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~-l~~l---~~~~~~l~l~P~r~La~q~~~~l~----~~g~~~~ 129 (499)
-..+.+.|- ..-.+ .+|+ ++...||-|||+++ +.+. +.+..+=++....-||..=++.+. .+|++++
T Consensus 75 g~~p~~vQll~~l~L--~~G~--laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGlsv~ 150 (266)
T PF07517_consen 75 GLRPYDVQLLGALAL--HKGR--LAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLSVG 150 (266)
T ss_dssp S----HHHHHHHHHH--HTTS--EEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT--EE
T ss_pred CCcccHHHHhhhhhc--ccce--eEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhhccc
Confidence 345677777 33333 4455 99999999999995 2222 345667777777888777666655 4699999
Q ss_pred EeeCCeecc----cCCCceEEEceeecc---------------ccCCccEEEEecCcccCC
Q 010836 130 LITGQEREE----VDGAKHRAVTVEMAD---------------VVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 130 ~~~g~~~~~----~~~~~~iv~T~e~~~---------------~l~~~~~iViDEah~~~~ 171 (499)
.++++.... .-..+++++|..-+. ...+++++||||+|.+.-
T Consensus 151 ~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~Li 211 (266)
T PF07517_consen 151 IITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILI 211 (266)
T ss_dssp EEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTT
T ss_pred cCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEE
Confidence 998875432 124678888873221 137899999999998763
No 177
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.05 E-value=0.00074 Score=73.70 Aligned_cols=85 Identities=24% Similarity=0.282 Sum_probs=61.7
Q ss_pred eEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccccc-cccEEEEcccccccCccccccChhhHHhhhccCCCC
Q 010836 265 LCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRY 343 (499)
Q Consensus 265 ~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidi-pv~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~ 343 (499)
...-+.|...-++|+..+++|+....-...|++|-..+.|||+ ..|.||+||.. +++..=.|.--|+.|.
T Consensus 1302 lY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgADTVvFYDsD---------wNPtMDaQAQDrChRI 1372 (1958)
T KOG0391|consen 1302 LYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGADTVVFYDSD---------WNPTMDAQAQDRCHRI 1372 (1958)
T ss_pred EEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCceEEEecCC---------CCchhhhHHHHHHHhh
Confidence 5666779999999999999999955556889999999999999 69999999873 3333333333333333
Q ss_pred CCCCCcEEEEEEcCCC
Q 010836 344 GSKFPVGEVTCLDSED 359 (499)
Q Consensus 344 g~~~~~g~~~~~~~~~ 359 (499)
|.. ..-.+|.+.++.
T Consensus 1373 Gqt-RDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1373 GQT-RDVHIYRLISER 1387 (1958)
T ss_pred cCc-cceEEEEeeccc
Confidence 332 226788887765
No 178
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=97.05 E-value=0.0034 Score=68.79 Aligned_cols=108 Identities=19% Similarity=0.163 Sum_probs=72.3
Q ss_pred CCCchhc----cchHHHhcCCceEEEEccCCccHHHHHHHHH-----HcCC--CEEEEccHHHHHHHHHHHHHhc--CCc
Q 010836 61 DLTRPHT----WYPLARKKVRKVILHVGPTNSGKTHQALSRL-----ESSS--SGIYCGPLRLLAWEVAKRLNKA--NVS 127 (499)
Q Consensus 61 ~l~~~q~----~~~~~~~~~~~~vli~apTGsGKT~~~l~~l-----~~~~--~~l~l~P~r~La~q~~~~l~~~--g~~ 127 (499)
.++.+|. |+-.++ .++-|-|+.-+.|-|||.+.+..+ .++. .-||+|||-.+.++ .-.|+++ |++
T Consensus 615 qLReYQkiGLdWLatLY-eknlNGILADEmGLGKTIQtISllAhLACeegnWGPHLIVVpTsviLnW-EMElKRwcPglK 692 (1958)
T KOG0391|consen 615 QLREYQKIGLDWLATLY-EKNLNGILADEMGLGKTIQTISLLAHLACEEGNWGPHLIVVPTSVILNW-EMELKRWCPGLK 692 (1958)
T ss_pred HHHHHHHhhHHHHHHHH-HhcccceehhhhcccchhHHHHHHHHHHhcccCCCCceEEeechhhhhh-hHHHhhhCCcce
Confidence 3555665 444443 367788999999999999964433 2333 34999999776554 3345554 677
Q ss_pred eeEeeCCeec--------ccCCCceEEEceeeccc-------cCCccEEEEecCcccC
Q 010836 128 CDLITGQERE--------EVDGAKHRAVTVEMADV-------VSDYDCAVIDEIQMLG 170 (499)
Q Consensus 128 ~~~~~g~~~~--------~~~~~~~iv~T~e~~~~-------l~~~~~iViDEah~~~ 170 (499)
+--++|..+. ...++-|+++|...+-+ -.++.++|+||||.+.
T Consensus 693 ILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~AFkrkrWqyLvLDEaqnIK 750 (1958)
T KOG0391|consen 693 ILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTAFKRKRWQYLVLDEAQNIK 750 (1958)
T ss_pred EeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHHHHhhccceeehhhhhhhc
Confidence 7777774321 12366788877754422 2789999999999986
No 179
>PRK06526 transposase; Provisional
Probab=97.00 E-value=0.0011 Score=63.05 Aligned_cols=72 Identities=18% Similarity=0.321 Sum_probs=43.0
Q ss_pred CCceEEEEccCCccHHHHHH---HHH-HcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceee
Q 010836 76 VRKVILHVGPTNSGKTHQAL---SRL-ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l---~~l-~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~ 151 (499)
.+++++++||+|+|||..+. ..+ ..+.+++| .....+..++...... |. ..+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f-~t~~~l~~~l~~~~~~---------~~-------------~~~~ 153 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLF-ATAAQWVARLAAAHHA---------GR-------------LQAE 153 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhh-hhHHHHHHHHHHHHhc---------Cc-------------HHHH
Confidence 47899999999999999963 223 33444444 4444455554322100 00 0012
Q ss_pred ccccCCccEEEEecCcccC
Q 010836 152 ADVVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 152 ~~~l~~~~~iViDEah~~~ 170 (499)
+..+.+++++||||+|...
T Consensus 154 l~~l~~~dlLIIDD~g~~~ 172 (254)
T PRK06526 154 LVKLGRYPLLIVDEVGYIP 172 (254)
T ss_pred HHHhccCCEEEEcccccCC
Confidence 2334678999999999875
No 180
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.95 E-value=0.0014 Score=55.48 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=15.0
Q ss_pred CCceEEEEccCCccHHHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALSRL 98 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l 98 (499)
+++.+++.||+|+|||..+-..+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~ 25 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLA 25 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHH
Confidence 36789999999999999974433
No 181
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=96.94 E-value=0.0044 Score=70.15 Aligned_cols=108 Identities=24% Similarity=0.219 Sum_probs=87.8
Q ss_pred CEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccccc-cccEEEEcccc
Q 010836 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFSTMK 318 (499)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidi-pv~~VI~~~~~ 318 (499)
.+++|. -.....-+...++..+ .....++|+++...|...++.|+++++..-++++|.+.+.|+|+ ..++||+++.
T Consensus 713 kvlifsq~t~~l~il~~~l~~~~-~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~- 790 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKALG-IKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDP- 790 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhcC-CcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecc-
Confidence 455555 4666666777777777 47999999999999999999999954567788888999999999 6999999998
Q ss_pred cccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 319 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 319 ~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
+++++...|...|+.|.|+. ..-.++.+...+
T Consensus 791 --------~wnp~~~~Qa~dRa~RigQ~-~~v~v~r~i~~~ 822 (866)
T COG0553 791 --------WWNPAVELQAIDRAHRIGQK-RPVKVYRLITRG 822 (866)
T ss_pred --------ccChHHHHHHHHHHHHhcCc-ceeEEEEeecCC
Confidence 88999999999999999886 334456665544
No 182
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.91 E-value=0.0043 Score=67.84 Aligned_cols=115 Identities=18% Similarity=0.209 Sum_probs=85.9
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCc-cEEEecchhhcccccc---ccEE
Q 010836 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEF-DVLVASDAIGMGLNLN---ISRI 312 (499)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~-~iLvaT~~~~~Gidip---v~~V 312 (499)
.++.++|+| |.+....+++.+...........+|..+.. ..++.|+. +.- -++|+|..+.+|||+| .+.|
T Consensus 478 ~~~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~~---~~l~~f~~--~~~~~~lv~~gsf~EGVD~~g~~l~~v 552 (654)
T COG1199 478 SPGGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDERE---ELLEKFKA--SGEGLILVGGGSFWEGVDFPGDALRLV 552 (654)
T ss_pred cCCCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcHH---HHHHHHHH--hcCCeEEEeeccccCcccCCCCCeeEE
Confidence 566788888 899999999999876542245556665554 78888887 332 7999999999999995 7889
Q ss_pred EEcccccccCc---------------------cccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 313 IFSTMKKFDGV---------------------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 313 I~~~~~~~~~~---------------------~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
|+.+.+.-+++ ...|.....+.|-+||+=|... ..|+++.++..-
T Consensus 553 vI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~--D~G~ivllD~R~ 618 (654)
T COG1199 553 VIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSED--DRGVIVLLDKRY 618 (654)
T ss_pred EEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCC--CceEEEEecccc
Confidence 98888763322 1234456789999999999655 569998887653
No 183
>PRK08181 transposase; Validated
Probab=96.89 E-value=0.0018 Score=62.02 Aligned_cols=74 Identities=16% Similarity=0.191 Sum_probs=46.8
Q ss_pred CCceEEEEccCCccHHHHHH---HHHHcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceeec
Q 010836 76 VRKVILHVGPTNSGKTHQAL---SRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l---~~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~ 152 (499)
+++++++.||+|+|||..+. ..+.+.+..++..+..+|..++.....+. . ..+.+
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~---------~-------------~~~~l 162 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARREL---------Q-------------LESAI 162 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCC---------c-------------HHHHH
Confidence 57889999999999998853 22333444444455566766664322110 0 00233
Q ss_pred cccCCccEEEEecCcccCC
Q 010836 153 DVVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 153 ~~l~~~~~iViDEah~~~~ 171 (499)
..+.+++++||||.+....
T Consensus 163 ~~l~~~dLLIIDDlg~~~~ 181 (269)
T PRK08181 163 AKLDKFDLLILDDLAYVTK 181 (269)
T ss_pred HHHhcCCEEEEeccccccC
Confidence 4457789999999998753
No 184
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.86 E-value=0.0041 Score=67.29 Aligned_cols=113 Identities=16% Similarity=0.122 Sum_probs=77.0
Q ss_pred CCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHH---HHHH-HcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeC
Q 010836 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA---LSRL-ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITG 133 (499)
Q Consensus 59 ~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~---l~~l-~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g 133 (499)
+..++..|. |+-.+.. ...-.+|.|=+|+|||+.. ++.| ..+++++..+-|-..+..+.-+++..++...-+..
T Consensus 667 ~~~LN~dQr~A~~k~L~-aedy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~~i~~lRLG~ 745 (1100)
T KOG1805|consen 667 LLRLNNDQRQALLKALA-AEDYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGFGIYILRLGS 745 (1100)
T ss_pred HhhcCHHHHHHHHHHHh-ccchheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhccCcceeecCC
Confidence 457888888 7766643 3455688999999999995 3333 35678888899999999999999987776442222
Q ss_pred Ceec-----------------------ccCCCceEEEce-eecc---ccCCccEEEEecCcccCCC
Q 010836 134 QERE-----------------------EVDGAKHRAVTV-EMAD---VVSDYDCAVIDEIQMLGCK 172 (499)
Q Consensus 134 ~~~~-----------------------~~~~~~~iv~T~-e~~~---~l~~~~~iViDEah~~~~~ 172 (499)
.++. ..+...++.||- ..-+ ..+.+|+.|||||-.+..+
T Consensus 746 ~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~~plf~~R~FD~cIiDEASQI~lP 811 (1100)
T KOG1805|consen 746 EEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGINHPLFVNRQFDYCIIDEASQILLP 811 (1100)
T ss_pred ccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCCchhhhccccCEEEEccccccccc
Confidence 2111 112345555554 2222 2377999999999998743
No 185
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.86 E-value=0.0047 Score=65.88 Aligned_cols=58 Identities=24% Similarity=0.149 Sum_probs=43.0
Q ss_pred chhc-cchHHHhcCCceEEEEccCCccHHHHH---HHHHHc---C---CCEEEEccHHHHHHHHHHHHHh
Q 010836 64 RPHT-WYPLARKKVRKVILHVGPTNSGKTHQA---LSRLES---S---SSGIYCGPLRLLAWEVAKRLNK 123 (499)
Q Consensus 64 ~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~---l~~l~~---~---~~~l~l~P~r~La~q~~~~l~~ 123 (499)
+.|. ++..+ +.++.+++.|+.|+|||++. +..+.+ . .++++++||--.|..+.+.+..
T Consensus 148 ~~Qk~A~~~a--l~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~ 215 (586)
T TIGR01447 148 NWQKVAVALA--LKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRK 215 (586)
T ss_pred HHHHHHHHHH--hhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHh
Confidence 4566 66665 66899999999999999985 233322 1 3678889999888888777654
No 186
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.84 E-value=0.0028 Score=60.37 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=54.7
Q ss_pred CCceEEEEccCCccHHHHH---HHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceeec
Q 010836 76 VRKVILHVGPTNSGKTHQA---LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~---l~~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~ 152 (499)
++.++++.||+|+|||..+ ...+.+.+.-++.+++.+|+.++...+..- ... .+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~---------~~~------------~~l~ 162 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEG---------RLE------------EKLL 162 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcC---------chH------------HHHH
Confidence 5889999999999999996 244456677788899999999888776641 000 0122
Q ss_pred cccCCccEEEEecCcccCC
Q 010836 153 DVVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 153 ~~l~~~~~iViDEah~~~~ 171 (499)
..+.+++++||||.=....
T Consensus 163 ~~l~~~dlLIiDDlG~~~~ 181 (254)
T COG1484 163 RELKKVDLLIIDDIGYEPF 181 (254)
T ss_pred HHhhcCCEEEEecccCccC
Confidence 3367899999999976543
No 187
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=96.82 E-value=0.007 Score=66.91 Aligned_cols=47 Identities=15% Similarity=-0.077 Sum_probs=37.0
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc------CCCEEEEccHHHHHHHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLES------SSSGIYCGPLRLLAWEVAKRLN 122 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~------~~~~l~l~P~r~La~q~~~~l~ 122 (499)
...++.+.++||+|||++++..+.. -.+.|++||+.+.-..+.+.+.
T Consensus 58 ~~~n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~ 110 (986)
T PRK15483 58 DKANIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQ 110 (986)
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhh
Confidence 3578999999999999998655532 2467899999999888876654
No 188
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=96.80 E-value=0.0023 Score=65.93 Aligned_cols=84 Identities=18% Similarity=0.247 Sum_probs=63.1
Q ss_pred CCCcHHHHhhhccCCCccccCCCCCc----hhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----------cCCC
Q 010836 39 ASVDVIIRSYCSGSGMKKFDFTDLTR----PHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----------SSSS 103 (499)
Q Consensus 39 ~~l~~~l~~~l~~~~~~~~~~~~l~~----~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~----------~~~~ 103 (499)
..-+.-++..|.+. .-..|+. +|. .-..+|...++.++|+|..|||||++|++.+. .++.
T Consensus 188 ~~~dEvL~~~Lek~-----ss~~mrdIV~TIQkEQneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~ 262 (747)
T COG3973 188 GGRDEVLQRVLEKN-----SSAKMRDIVETIQKEQNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKP 262 (747)
T ss_pred chHHHHHHHHHHhc-----cchhHHHHHHHhhHhHHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCc
Confidence 34456667777665 3334443 344 55567778899999999999999999987652 3456
Q ss_pred EEEEccHHHHHHHHHHHHHhcCCc
Q 010836 104 GIYCGPLRLLAWEVAKRLNKANVS 127 (499)
Q Consensus 104 ~l~l~P~r~La~q~~~~l~~~g~~ 127 (499)
++++.|.+....-+...|-++|..
T Consensus 263 vlvl~PN~vFleYis~VLPeLGe~ 286 (747)
T COG3973 263 VLVLGPNRVFLEYISRVLPELGEE 286 (747)
T ss_pred eEEEcCcHHHHHHHHHhchhhccC
Confidence 899999999999999999988754
No 189
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.79 E-value=0.0018 Score=70.71 Aligned_cols=113 Identities=22% Similarity=0.249 Sum_probs=71.0
Q ss_pred CCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcC--CCCCccEEEecchhhcccccc---ccEEE
Q 010836 240 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFND--ASSEFDVLVASDAIGMGLNLN---ISRII 313 (499)
Q Consensus 240 ~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~--~~g~~~iLvaT~~~~~Gidip---v~~VI 313 (499)
+..+|+| |.+..+.+++.|..... .-...+|.. .|..+++.|++ ..++-.||++|..+.+|||+| +++||
T Consensus 535 gg~LVlFtSy~~l~~v~~~l~~~~~-~~ll~Q~~~---~~~~ll~~f~~~~~~~~~~VL~g~~sf~EGVD~pGd~l~~vI 610 (697)
T PRK11747 535 KGSLVLFASRRQMQKVADLLPRDLR-LMLLVQGDQ---PRQRLLEKHKKRVDEGEGSVLFGLQSFAEGLDLPGDYLTQVI 610 (697)
T ss_pred CCEEEEeCcHHHHHHHHHHHHHhcC-CcEEEeCCc---hHHHHHHHHHHHhccCCCeEEEEeccccccccCCCCceEEEE
Confidence 4456666 78888888887765333 223445543 34566666653 114556888888888899885 78888
Q ss_pred EcccccccCc------c---------------ccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC
Q 010836 314 FSTMKKFDGV------E---------------LRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 314 ~~~~~~~~~~------~---------------~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~ 358 (499)
..+++.-.+. + .-|.....+.|-+||.=|... ..|.+++++..
T Consensus 611 I~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~--D~G~i~ilD~R 674 (697)
T PRK11747 611 ITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQ--DRGRVTILDRR 674 (697)
T ss_pred EEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCC--ceEEEEEEccc
Confidence 8877653221 0 112234567888888888765 34777777665
No 190
>PRK10536 hypothetical protein; Provisional
Probab=96.78 E-value=0.0015 Score=61.38 Aligned_cols=53 Identities=15% Similarity=0.213 Sum_probs=34.2
Q ss_pred cCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHH----HHHcC--CCEEEEccHHH
Q 010836 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALS----RLESS--SSGIYCGPLRL 112 (499)
Q Consensus 58 ~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~----~l~~~--~~~l~l~P~r~ 112 (499)
++.-.+..|. .+..+ .++..+++.||+|||||+.+.. .+.++ .++++.-|...
T Consensus 56 ~i~p~n~~Q~~~l~al--~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~ 115 (262)
T PRK10536 56 PILARNEAQAHYLKAI--ESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQ 115 (262)
T ss_pred cccCCCHHHHHHHHHH--hcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCC
Confidence 4555666777 44444 4578999999999999999743 33333 23444555543
No 191
>PRK08727 hypothetical protein; Validated
Probab=96.76 E-value=0.0044 Score=58.34 Aligned_cols=63 Identities=24% Similarity=0.385 Sum_probs=38.9
Q ss_pred CceEEEEccCCccHHHHHH---HHHH-cCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceeec
Q 010836 77 RKVILHVGPTNSGKTHQAL---SRLE-SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l---~~l~-~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~ 152 (499)
...+++.||+|+|||..+- ..+. .+.+++|+ |..++.....+. +
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~-~~~~~~~~~~~~-------------------------------~ 88 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYL-PLQAAAGRLRDA-------------------------------L 88 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEE-eHHHhhhhHHHH-------------------------------H
Confidence 3569999999999998742 2233 34455665 333333222221 1
Q ss_pred cccCCccEEEEecCcccCC
Q 010836 153 DVVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 153 ~~l~~~~~iViDEah~~~~ 171 (499)
+.+.+++++||||+|.+..
T Consensus 89 ~~l~~~dlLiIDDi~~l~~ 107 (233)
T PRK08727 89 EALEGRSLVALDGLESIAG 107 (233)
T ss_pred HHHhcCCEEEEeCcccccC
Confidence 2335668999999998863
No 192
>PRK04296 thymidine kinase; Provisional
Probab=96.74 E-value=0.00062 Score=61.94 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=24.4
Q ss_pred CceEEEEccCCccHHHHHHHHHH----cCCCEEEEcc
Q 010836 77 RKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGP 109 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P 109 (499)
+...++.||+|+|||+.++..+. .+.+++++-|
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 46789999999999999865553 3446666655
No 193
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.68 E-value=0.0025 Score=59.90 Aligned_cols=94 Identities=27% Similarity=0.253 Sum_probs=50.3
Q ss_pred EEEEccCCccHHHHHHHHHHcCCCEEEE---ccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceeecccc-
Q 010836 80 ILHVGPTNSGKTHQALSRLESSSSGIYC---GPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVV- 155 (499)
Q Consensus 80 vli~apTGsGKT~~~l~~l~~~~~~l~l---~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~~l- 155 (499)
++|.|+.|||||+.....+... +++ .|+..+..... ..........+.+..+...-
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~---~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~v~s~~~~~~~~ 60 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR---LVVTVISPTIELYTEWL-----------------PDPPSKSVRTVDSFLKALVKP 60 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc---cccccccccceeccccc-----------------cccCCccccEEeEhhhccccc
Confidence 4789999999999877766655 333 34333333322 00000111112222222111
Q ss_pred CCccEEEEecCcccCCCCCChhHHHHHhccccccceEeecCC
Q 010836 156 SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPA 197 (499)
Q Consensus 156 ~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~~~~~~~~ 197 (499)
...+.+||||++.+.. |+... ++.......+.++|++.
T Consensus 61 ~~~~~liiDE~~~~~~---g~l~~-l~~~~~~~~~~l~GDp~ 98 (234)
T PF01443_consen 61 KSYDTLIIDEAQLLPP---GYLLL-LLSLSPAKNVILFGDPL 98 (234)
T ss_pred CcCCEEEEeccccCCh---HHHHH-HHhhccCcceEEEECch
Confidence 3589999999999842 43333 33333445667777764
No 194
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.62 E-value=0.014 Score=63.86 Aligned_cols=59 Identities=12% Similarity=-0.008 Sum_probs=43.0
Q ss_pred CCCchhc--cchHHHhcC------CceEEEEccCCccHHHHHHHHHH-----cCCCEEEEccHHHHHHHHHH
Q 010836 61 DLTRPHT--WYPLARKKV------RKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLAWEVAK 119 (499)
Q Consensus 61 ~l~~~q~--~~~~~~~~~------~~~vli~apTGsGKT~~~l~~l~-----~~~~~l~l~P~r~La~q~~~ 119 (499)
..++.|. +-.....+. ++.+++.||||+|||++|+.+.. .++++||-..|+.|-+|+..
T Consensus 25 e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~~ 96 (697)
T PRK11747 25 IPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLVS 96 (697)
T ss_pred CcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHh
Confidence 4666666 333333343 37899999999999999865432 45678888999999999863
No 195
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.61 E-value=0.00088 Score=56.85 Aligned_cols=37 Identities=38% Similarity=0.446 Sum_probs=25.8
Q ss_pred CceEEEEccCCccHHHHHHHHHHc--CC--CEEEEccHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALSRLES--SS--SGIYCGPLRLL 113 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~l~~--~~--~~l~l~P~r~L 113 (499)
+..+++.||+|+|||+.+...+.. .. .++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 578999999999999997544432 22 46777555443
No 196
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.60 E-value=0.0041 Score=53.12 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=23.7
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc----CCCEEEEccH
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLES----SSSGIYCGPL 110 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~----~~~~l~l~P~ 110 (499)
.++.+++.||+|+|||..+-..... +..++++...
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~ 56 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNAS 56 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehh
Confidence 4788999999999999886433322 3455555433
No 197
>PRK12377 putative replication protein; Provisional
Probab=96.59 E-value=0.0067 Score=57.37 Aligned_cols=73 Identities=19% Similarity=0.247 Sum_probs=48.3
Q ss_pred CceEEEEccCCccHHHHH---HHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceeecc
Q 010836 77 RKVILHVGPTNSGKTHQA---LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMAD 153 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~---l~~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~ 153 (499)
...+++.||+|+|||..+ ...+.+.+..++..+..+|..++...+.. +.. ..+.+.
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~---------~~~------------~~~~l~ 159 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDN---------GQS------------GEKFLQ 159 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhc---------cch------------HHHHHH
Confidence 468999999999999985 34444555555556666777776554421 000 013445
Q ss_pred ccCCccEEEEecCcccC
Q 010836 154 VVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 154 ~l~~~~~iViDEah~~~ 170 (499)
.+.+++++||||++...
T Consensus 160 ~l~~~dLLiIDDlg~~~ 176 (248)
T PRK12377 160 ELCKVDLLVLDEIGIQR 176 (248)
T ss_pred HhcCCCEEEEcCCCCCC
Confidence 56889999999997654
No 198
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.59 E-value=0.0068 Score=57.19 Aligned_cols=75 Identities=17% Similarity=0.223 Sum_probs=46.2
Q ss_pred ceEEEEccCCccHHHHH---HHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceeeccc
Q 010836 78 KVILHVGPTNSGKTHQA---LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADV 154 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~---l~~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~~ 154 (499)
..+++.|++|+|||..+ ...+...+..+++.+...|...+...+... +.. ..+.+..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~---------~~~-----------~~~~l~~ 159 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNS---------ETS-----------EEQLLND 159 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhc---------ccc-----------HHHHHHH
Confidence 57999999999999985 334444444445556555655544433210 000 0123344
Q ss_pred cCCccEEEEecCcccCCC
Q 010836 155 VSDYDCAVIDEIQMLGCK 172 (499)
Q Consensus 155 l~~~~~iViDEah~~~~~ 172 (499)
+.+++++||||++.....
T Consensus 160 l~~~dlLvIDDig~~~~s 177 (244)
T PRK07952 160 LSNVDLLVIDEIGVQTES 177 (244)
T ss_pred hccCCEEEEeCCCCCCCC
Confidence 678999999999987643
No 199
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.55 E-value=0.0053 Score=61.86 Aligned_cols=83 Identities=20% Similarity=0.209 Sum_probs=50.6
Q ss_pred CceEEEEccCCccHHHHHHH---HHH-----cCCCEEEE--ccHHHHHHHHHHHHHh-cCCceeEeeCCeecccCCCceE
Q 010836 77 RKVILHVGPTNSGKTHQALS---RLE-----SSSSGIYC--GPLRLLAWEVAKRLNK-ANVSCDLITGQEREEVDGAKHR 145 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~---~l~-----~~~~~l~l--~P~r~La~q~~~~l~~-~g~~~~~~~g~~~~~~~~~~~i 145 (499)
++.++++||||+|||+.+.. .+. ++.++.++ =+.|.-+.++.+.+.+ +|+++.........
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l-------- 245 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDL-------- 245 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHH--------
Confidence 57899999999999999632 121 13345443 5557766666666654 67665332210000
Q ss_pred EEceeeccccCCccEEEEecCcccC
Q 010836 146 AVTVEMADVVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 146 v~T~e~~~~l~~~~~iViDEah~~~ 170 (499)
...+..+.++++|+||++....
T Consensus 246 ---~~~L~~~~~~DlVLIDTaGr~~ 267 (388)
T PRK12723 246 ---KEEITQSKDFDLVLVDTIGKSP 267 (388)
T ss_pred ---HHHHHHhCCCCEEEEcCCCCCc
Confidence 0112234789999999998864
No 200
>PRK06921 hypothetical protein; Provisional
Probab=96.54 E-value=0.0055 Score=58.77 Aligned_cols=69 Identities=16% Similarity=0.161 Sum_probs=43.1
Q ss_pred CCceEEEEccCCccHHHHH---HHHHHcC-CCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceee
Q 010836 76 VRKVILHVGPTNSGKTHQA---LSRLESS-SSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~---l~~l~~~-~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~ 151 (499)
.+..+++.|+||+|||..+ ...+.+. +..++.++..++..++...+... .+.
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~------------------------~~~ 171 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLL------------------------EAK 171 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHH------------------------HHH
Confidence 4678999999999999885 3334443 44444455556655554332110 012
Q ss_pred ccccCCccEEEEecCcc
Q 010836 152 ADVVSDYDCAVIDEIQM 168 (499)
Q Consensus 152 ~~~l~~~~~iViDEah~ 168 (499)
+..+...+++||||+|.
T Consensus 172 ~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 172 LNRMKKVEVLFIDDLFK 188 (266)
T ss_pred HHHhcCCCEEEEecccc
Confidence 33456789999999976
No 201
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.52 E-value=0.0033 Score=68.71 Aligned_cols=66 Identities=17% Similarity=0.043 Sum_probs=48.7
Q ss_pred ccCCCCCchhc-cc-hHHHhc-CCceEEEEccCCccHHHHHHHHHHc-----CCCEEEEccHHHHHHHHHHHHH
Q 010836 57 FDFTDLTRPHT-WY-PLARKK-VRKVILHVGPTNSGKTHQALSRLES-----SSSGIYCGPLRLLAWEVAKRLN 122 (499)
Q Consensus 57 ~~~~~l~~~q~-~~-~~~~~~-~~~~vli~apTGsGKT~~~l~~l~~-----~~~~l~l~P~r~La~q~~~~l~ 122 (499)
+....+++.|. .. ...... +++.+++.||||+|||+.++.+... +.+++|..+|+.|-.|+.++..
T Consensus 11 ~~~~~~r~~Q~~~~~~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~ 84 (654)
T COG1199 11 FPGFEPRPEQREMAEAVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDL 84 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhc
Confidence 35677888887 33 222333 4555999999999999998655432 3688999999999999987754
No 202
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.52 E-value=0.017 Score=49.64 Aligned_cols=103 Identities=13% Similarity=0.131 Sum_probs=67.4
Q ss_pred HHHHHHHHHHcCCC-----eEEEEcCCCCHHHHHHHHHHhcCCCCC-ccEEEecchhhcccccc---ccEEEEccccccc
Q 010836 251 IYRLKKAIESRGKH-----LCSIVYGSLPPETRTRQATRFNDASSE-FDVLVASDAIGMGLNLN---ISRIIFSTMKKFD 321 (499)
Q Consensus 251 ~~~l~~~L~~~~~~-----~v~~~hg~l~~~~R~~~~~~f~~~~g~-~~iLvaT~~~~~Gidip---v~~VI~~~~~~~~ 321 (499)
.+++.+.+.+.+.. ...++.-+....+...+++.|++ .. ..||++|.-+.+|+|+| ++.||..+++.-+
T Consensus 4 m~~v~~~~~~~~~~~~l~~~~~i~~e~~~~~~~~~~l~~f~~--~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glPfp~ 81 (141)
T smart00492 4 MESFVQYWKENGILENINKNLLLLVQGEDGKETGKLLEKYVE--ACENAILLATARFSEGVDFPGDYLRAVIIDGLPFPY 81 (141)
T ss_pred HHHHHHHHHHcCchhhHhcCCeEEEeCCChhHHHHHHHHHHH--cCCCEEEEEccceecceecCCCCeeEEEEEecCCCC
Confidence 34555555554321 12334434455456789999987 33 36999998899999995 7889988877532
Q ss_pred Cc--------------c-cc-------ccChhhHHhhhccCCCCCCCCCcEEEEEEcC
Q 010836 322 GV--------------E-LR-------DLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (499)
Q Consensus 322 ~~--------------~-~~-------p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~ 357 (499)
+. . .. |.....+.|-+||+=|...+ .|.++.++.
T Consensus 82 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D--~g~i~l~D~ 137 (141)
T smart00492 82 PDSPILKARLELLRDKGQIRPFDFVSLPDAMRTLAQCVGRLIRGAND--YGVVVIADK 137 (141)
T ss_pred CCCHHHHHHHHHHHHhCCCCchhHHHHHHHHHHHHHHhCccccCcCc--eEEEEEEec
Confidence 22 0 11 23356789999999998863 477776654
No 203
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.49 E-value=0.0039 Score=61.27 Aligned_cols=48 Identities=21% Similarity=0.172 Sum_probs=38.2
Q ss_pred CCceEEEEccCCccHHHHHHHHH----HcC----CCEEEEccHHHHHHHHHHHHHh
Q 010836 76 VRKVILHVGPTNSGKTHQALSRL----ESS----SSGIYCGPLRLLAWEVAKRLNK 123 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l----~~~----~~~l~l~P~r~La~q~~~~l~~ 123 (499)
....++|.|..|||||++.+..+ ... .+++++++|+..|.++.+++.+
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~ 67 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRE 67 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHH
Confidence 47899999999999999975432 222 3679999999999999999986
No 204
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=96.49 E-value=0.0054 Score=56.31 Aligned_cols=17 Identities=41% Similarity=0.573 Sum_probs=14.7
Q ss_pred ceEEEEccCCccHHHHH
Q 010836 78 KVILHVGPTNSGKTHQA 94 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~ 94 (499)
.++++.||+|+|||+.|
T Consensus 51 ~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp -EEEEESSTTSSHHHHH
T ss_pred ceEEEECCCccchhHHH
Confidence 47999999999999776
No 205
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.42 E-value=0.0088 Score=63.98 Aligned_cols=59 Identities=20% Similarity=0.180 Sum_probs=43.7
Q ss_pred Cchhc-cchHHHhcCCceEEEEccCCccHHHHH---HHHHHc---C--CCEEEEccHHHHHHHHHHHHHh
Q 010836 63 TRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA---LSRLES---S--SSGIYCGPLRLLAWEVAKRLNK 123 (499)
Q Consensus 63 ~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~---l~~l~~---~--~~~l~l~P~r~La~q~~~~l~~ 123 (499)
.+.|. +.-.+ +.++.++|.|++|+|||++. +..+.+ + .++++++||.-.|..+.+.+..
T Consensus 154 ~d~Qk~Av~~a--~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~ 221 (615)
T PRK10875 154 VDWQKVAAAVA--LTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGK 221 (615)
T ss_pred CHHHHHHHHHH--hcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHh
Confidence 46777 66655 66899999999999999985 333322 1 2466779999999888887753
No 206
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.29 E-value=0.0073 Score=56.45 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=17.6
Q ss_pred CCceEEEEccCCccHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l 95 (499)
.+..+++.||+|+|||+.+-
T Consensus 37 ~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 46789999999999999874
No 207
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.29 E-value=0.0068 Score=66.71 Aligned_cols=68 Identities=16% Similarity=0.183 Sum_probs=50.1
Q ss_pred cccCCCCCchhc-cchH-HHh-cCCceEEEEccCCccHHHHHH----HHHHcC---CCEEEEccHHHHHHHHHHHHHh
Q 010836 56 KFDFTDLTRPHT-WYPL-ARK-KVRKVILHVGPTNSGKTHQAL----SRLESS---SSGIYCGPLRLLAWEVAKRLNK 123 (499)
Q Consensus 56 ~~~~~~l~~~q~-~~~~-~~~-~~~~~vli~apTGsGKT~~~l----~~l~~~---~~~l~l~P~r~La~q~~~~l~~ 123 (499)
.|.|..+.+.|. .... ... ..+++.++.+|||+|||++.| .+..+. .+++|++.|..-..|..+.+++
T Consensus 5 ~FPy~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 5 YFPYEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred ecCCCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 356777788887 2222 111 258899999999999999964 444422 4789999999999999988876
No 208
>PRK08116 hypothetical protein; Validated
Probab=96.27 E-value=0.011 Score=56.68 Aligned_cols=73 Identities=16% Similarity=0.168 Sum_probs=45.8
Q ss_pred ceEEEEccCCccHHHHH---HHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceeeccc
Q 010836 78 KVILHVGPTNSGKTHQA---LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADV 154 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~---l~~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~~ 154 (499)
..+++.|++|+|||..+ ...+.+.+..++..+...+..++...+...+ .. ...+.+..
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~--------~~-----------~~~~~~~~ 175 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSG--------KE-----------DENEIIRS 175 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccc--------cc-----------cHHHHHHH
Confidence 45999999999999996 3444444555555666666666554443210 00 01123445
Q ss_pred cCCccEEEEecCccc
Q 010836 155 VSDYDCAVIDEIQML 169 (499)
Q Consensus 155 l~~~~~iViDEah~~ 169 (499)
+...+++||||++.-
T Consensus 176 l~~~dlLviDDlg~e 190 (268)
T PRK08116 176 LVNADLLILDDLGAE 190 (268)
T ss_pred hcCCCEEEEecccCC
Confidence 677899999999753
No 209
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.27 E-value=0.013 Score=64.52 Aligned_cols=98 Identities=19% Similarity=0.161 Sum_probs=61.1
Q ss_pred CCCCchhc-cchHHHhcCCceEEEEccCCccHHHHH--H-HHHH-cCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCC
Q 010836 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA--L-SRLE-SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQ 134 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~--l-~~l~-~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~ 134 (499)
..+++-|. ++..+. ..++.+++.|+.|+|||+.. + ..+. .+.++++++||--.|..+.+. .|+...-++.-
T Consensus 351 ~~Ls~~Q~~Av~~i~-~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~~~---~g~~a~Ti~~~ 426 (744)
T TIGR02768 351 YRLSEEQYEAVRHVT-GSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQAE---SGIESRTLASL 426 (744)
T ss_pred CCCCHHHHHHHHHHh-cCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHhc---cCCceeeHHHH
Confidence 45788888 887763 23578999999999999984 2 2232 345788889997777665432 23332221111
Q ss_pred eecccCCCceEEEceeeccccCCccEEEEecCcccCC
Q 010836 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 135 ~~~~~~~~~~iv~T~e~~~~l~~~~~iViDEah~~~~ 171 (499)
.... ......+...+++||||+-++..
T Consensus 427 ~~~~----------~~~~~~~~~~~llIvDEasMv~~ 453 (744)
T TIGR02768 427 EYAW----------ANGRDLLSDKDVLVIDEAGMVGS 453 (744)
T ss_pred Hhhh----------ccCcccCCCCcEEEEECcccCCH
Confidence 0000 00012245789999999999863
No 210
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=96.27 E-value=0.019 Score=61.34 Aligned_cols=48 Identities=15% Similarity=0.094 Sum_probs=40.4
Q ss_pred cCCceEEEEccCCccHHHHHHHHHH------cCCCEEEEccHHHHHHHHHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQALSRLE------SSSSGIYCGPLRLLAWEVAKRLN 122 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l~~l~------~~~~~l~l~P~r~La~q~~~~l~ 122 (499)
.+++.+++.||||+|||++|+.+.. .+++++|++||++|+.|+.+.+.
T Consensus 14 ~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~ 67 (636)
T TIGR03117 14 RQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELE 67 (636)
T ss_pred hcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHH
Confidence 3578899999999999999865542 25788999999999999998765
No 211
>PF13173 AAA_14: AAA domain
Probab=96.23 E-value=0.031 Score=47.15 Aligned_cols=32 Identities=28% Similarity=0.409 Sum_probs=24.7
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc---CCCEEEE
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLES---SSSGIYC 107 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~---~~~~l~l 107 (499)
+++.+++.||.|+|||+.+.+.+.+ ..+.+|+
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi 35 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAKDLLPPENILYI 35 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhcccccceee
Confidence 3688999999999999998666643 3456666
No 212
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.20 E-value=0.0042 Score=56.15 Aligned_cols=48 Identities=23% Similarity=0.223 Sum_probs=34.3
Q ss_pred EEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHhcCCce
Q 010836 80 ILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (499)
Q Consensus 80 vli~apTGsGKT~~~l~~l----~~~~~~l~l~P~r~La~q~~~~l~~~g~~~ 128 (499)
+++.||+|+|||..+++.+ .++.+++|+.. .+...++.+++..+|...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~-e~~~~~~~~~~~~~g~~~ 53 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL-EESPEELIENAESLGWDL 53 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC-CCCHHHHHHHHHHcCCCh
Confidence 6899999999999976544 34567777743 455677777777766553
No 213
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.13 E-value=0.016 Score=54.54 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=16.0
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
...+++.||+|+|||..+
T Consensus 45 ~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 468999999999999885
No 214
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.10 E-value=0.0086 Score=60.36 Aligned_cols=103 Identities=13% Similarity=0.253 Sum_probs=62.5
Q ss_pred CCchhc-cchHH----HhcCCceEEEEccCCccHHHHH--HHHHHc--CCCEEEEccHHHHHHHH--HHHHHh-cCCcee
Q 010836 62 LTRPHT-WYPLA----RKKVRKVILHVGPTNSGKTHQA--LSRLES--SSSGIYCGPLRLLAWEV--AKRLNK-ANVSCD 129 (499)
Q Consensus 62 l~~~q~-~~~~~----~~~~~~~vli~apTGsGKT~~~--l~~l~~--~~~~l~l~P~r~La~q~--~~~l~~-~g~~~~ 129 (499)
|++-|+ ++..+ ...++..+++.|+-|+|||+.+ +....+ +..+++++||-..|..+ -..+.. +++++.
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~~ 81 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPIN 81 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCcccc
Confidence 344555 54433 3356889999999999999995 433333 34678889998888776 222322 334332
Q ss_pred EeeCCeecccCCCceEEEceeeccccCCccEEEEecCcccCC
Q 010836 130 LITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 130 ~~~g~~~~~~~~~~~iv~T~e~~~~l~~~~~iViDEah~~~~ 171 (499)
.. . . ...-+-....+...+...+++||||+=++..
T Consensus 82 ~~--~-~----~~~~~~~~~~~~~~l~~~~~lIiDEism~~~ 116 (364)
T PF05970_consen 82 NN--E-K----SQCKISKNSRLRERLRKADVLIIDEISMVSA 116 (364)
T ss_pred cc--c-c----ccccccccchhhhhhhhheeeecccccchhH
Confidence 21 0 0 0000011124456678999999999998863
No 215
>PRK06893 DNA replication initiation factor; Validated
Probab=96.01 E-value=0.008 Score=56.42 Aligned_cols=32 Identities=25% Similarity=0.317 Sum_probs=21.2
Q ss_pred CceEEEEccCCccHHHHHHH----HHHcCCCEEEEc
Q 010836 77 RKVILHVGPTNSGKTHQALS----RLESSSSGIYCG 108 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~----~l~~~~~~l~l~ 108 (499)
+..+++.||+|+|||..+.. ...++.+++|+.
T Consensus 39 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 39 QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP 74 (229)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence 45679999999999988532 223344555553
No 216
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.94 E-value=0.016 Score=57.34 Aligned_cols=75 Identities=17% Similarity=0.174 Sum_probs=47.2
Q ss_pred CCceEEEEccCCccHHHHH---HHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceeec
Q 010836 76 VRKVILHVGPTNSGKTHQA---LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~---l~~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~ 152 (499)
.++++++.||||+|||..+ ...+...+..++..+...|..++....... ... ..+.+
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~---------~~~-----------~~~~~ 241 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNN---------DKE-----------LEEVY 241 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhcc---------chh-----------HHHHH
Confidence 3588999999999999985 344455555555566666766654321100 000 00114
Q ss_pred cccCCccEEEEecCcccC
Q 010836 153 DVVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 153 ~~l~~~~~iViDEah~~~ 170 (499)
..+.+++++|||+.+...
T Consensus 242 ~~l~~~DLLIIDDlG~e~ 259 (329)
T PRK06835 242 DLLINCDLLIIDDLGTEK 259 (329)
T ss_pred HHhccCCEEEEeccCCCC
Confidence 556788999999998764
No 217
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=95.93 E-value=0.041 Score=47.31 Aligned_cols=103 Identities=14% Similarity=0.093 Sum_probs=65.4
Q ss_pred HHHHHHHHHHcCCC--eEEEEcCCCCHHHHHHHHHHhcCCCCCc---cEEEecch--hhcccccc---ccEEEEcccccc
Q 010836 251 IYRLKKAIESRGKH--LCSIVYGSLPPETRTRQATRFNDASSEF---DVLVASDA--IGMGLNLN---ISRIIFSTMKKF 320 (499)
Q Consensus 251 ~~~l~~~L~~~~~~--~v~~~hg~l~~~~R~~~~~~f~~~~g~~---~iLvaT~~--~~~Gidip---v~~VI~~~~~~~ 320 (499)
.+.+++.+.+.+.. ...++.-+....+....++.|++ ..- .||+++.- +.+|||+| ++.||..+.+.-
T Consensus 4 m~~v~~~~~~~~~~~~~~~i~~e~~~~~~~~~~l~~f~~--~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glPfp 81 (142)
T smart00491 4 LEQVVEYWKENGILEINKPVFIEGKDSGETEELLEKYSA--ACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIPFP 81 (142)
T ss_pred HHHHHHHHHhcCccccCceEEEECCCCchHHHHHHHHHH--hcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecCCC
Confidence 45566666654320 12223222223344678888987 322 58888877 99999995 789999888753
Q ss_pred cCc----------------------cccccChhhHHhhhccCCCCCCCCCcEEEEEEcC
Q 010836 321 DGV----------------------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (499)
Q Consensus 321 ~~~----------------------~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~ 357 (499)
.+. ...|.......|-+||+=|... ..|.++.++.
T Consensus 82 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~Qa~GR~iR~~~--D~g~i~l~D~ 138 (142)
T smart00491 82 NPDSPILRARLEYLDEKGGIRPFDEVYLFDAMRALAQAIGRAIRHKN--DYGVVVLLDK 138 (142)
T ss_pred CCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhCccccCcc--ceEEEEEEec
Confidence 322 0122344678999999999886 4577776654
No 218
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.82 E-value=0.02 Score=55.55 Aligned_cols=80 Identities=28% Similarity=0.265 Sum_probs=44.3
Q ss_pred CCceEEEEccCCccHHHHHHH---HH-Hc-C-CCEEEE--ccHHHHHHHHHHHHHh-cCCceeEeeCCeecccCCCceEE
Q 010836 76 VRKVILHVGPTNSGKTHQALS---RL-ES-S-SSGIYC--GPLRLLAWEVAKRLNK-ANVSCDLITGQEREEVDGAKHRA 146 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~---~l-~~-~-~~~l~l--~P~r~La~q~~~~l~~-~g~~~~~~~g~~~~~~~~~~~iv 146 (499)
+++.++++||||+|||+.+.. .+ .+ + .++.++ =|.|.-+.++...+.+ .|+++....... .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~--~-------- 262 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPK--E-------- 262 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHH--H--------
Confidence 367899999999999999632 22 23 3 355444 4445555555444443 454443211100 0
Q ss_pred EceeeccccCCccEEEEecC
Q 010836 147 VTVEMADVVSDYDCAVIDEI 166 (499)
Q Consensus 147 ~T~e~~~~l~~~~~iViDEa 166 (499)
-.+.+..+.++++|+||.+
T Consensus 263 -l~~~l~~~~~~d~vliDt~ 281 (282)
T TIGR03499 263 -LRKALDRLRDKDLILIDTA 281 (282)
T ss_pred -HHHHHHHccCCCEEEEeCC
Confidence 0122233466899999975
No 219
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=95.82 E-value=0.022 Score=52.56 Aligned_cols=63 Identities=11% Similarity=-0.036 Sum_probs=40.7
Q ss_pred CCCCchhc--cchHHHhcCCceEEEEccCCccHHHHHHH---HHHcCC-CEE-EEccHHHHHHHHHHHHHh
Q 010836 60 TDLTRPHT--WYPLARKKVRKVILHVGPTNSGKTHQALS---RLESSS-SGI-YCGPLRLLAWEVAKRLNK 123 (499)
Q Consensus 60 ~~l~~~q~--~~~~~~~~~~~~vli~apTGsGKT~~~l~---~l~~~~-~~l-~l~P~r~La~q~~~~l~~ 123 (499)
--+++.|. +-..+..-++++.+...-+|.|||.+++. .++.++ +.+ +++|. +|..|.+..+..
T Consensus 22 iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk-~Ll~q~~~~L~~ 91 (229)
T PF12340_consen 22 ILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPK-ALLEQMRQMLRS 91 (229)
T ss_pred ceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCH-HHHHHHHHHHHH
Confidence 34566666 33323223468999999999999999743 333343 443 34664 688888888774
No 220
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=95.80 E-value=0.027 Score=55.66 Aligned_cols=92 Identities=16% Similarity=0.147 Sum_probs=49.9
Q ss_pred CceEEEEccCCccHHHHHHHHHHc-CCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceeecccc
Q 010836 77 RKVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVV 155 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~l~~-~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~~l 155 (499)
=.+.|+.||+|+|||+.|-..-.. +....-+..+..=+.++.+.+.+.. .....
T Consensus 48 l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~-------------------------~~~~~ 102 (436)
T COG2256 48 LHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEAR-------------------------KNRLL 102 (436)
T ss_pred CceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHH-------------------------HHHhc
Confidence 467899999999999987322222 2233444444444444444333210 00001
Q ss_pred CCccEEEEecCcccCCCCCChhHHHHHhccc-cccceEeecCCC
Q 010836 156 SDYDCAVIDEIQMLGCKTRGFSFTRALLGIC-ANELHLCGDPAA 198 (499)
Q Consensus 156 ~~~~~iViDEah~~~~~~~g~~~~~~ll~l~-~~~~~~~~~~~~ 198 (499)
.+=-+++|||+|++.-. ..+.++-.. ...+.++|.++.
T Consensus 103 gr~tiLflDEIHRfnK~-----QQD~lLp~vE~G~iilIGATTE 141 (436)
T COG2256 103 GRRTILFLDEIHRFNKA-----QQDALLPHVENGTIILIGATTE 141 (436)
T ss_pred CCceEEEEehhhhcChh-----hhhhhhhhhcCCeEEEEeccCC
Confidence 12248899999998643 234444433 445566666653
No 221
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=95.77 E-value=0.0046 Score=59.33 Aligned_cols=85 Identities=15% Similarity=0.094 Sum_probs=48.1
Q ss_pred CceEEEEccCCccHHHHHHHHHHcCC----------CEEEE-ccHHHHHHHHHHHHH-hcCCceeEeeCCeecccCCCce
Q 010836 77 RKVILHVGPTNSGKTHQALSRLESSS----------SGIYC-GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKH 144 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~l~~~~----------~~l~l-~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~ 144 (499)
-.+++++|+||.|||.++-.....++ .++++ +|...-....+..+- .+|.+..--.....
T Consensus 61 mp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~-------- 132 (302)
T PF05621_consen 61 MPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPRDRVAK-------- 132 (302)
T ss_pred CCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCCCCHHH--------
Confidence 37899999999999998744443221 24444 666555555555443 45544322000000
Q ss_pred EEEceeecccc--CCccEEEEecCcccCC
Q 010836 145 RAVTVEMADVV--SDYDCAVIDEIQMLGC 171 (499)
Q Consensus 145 iv~T~e~~~~l--~~~~~iViDEah~~~~ 171 (499)
........+ -+++++||||+|.+..
T Consensus 133 --~~~~~~~llr~~~vrmLIIDE~H~lLa 159 (302)
T PF05621_consen 133 --LEQQVLRLLRRLGVRMLIIDEFHNLLA 159 (302)
T ss_pred --HHHHHHHHHHHcCCcEEEeechHHHhc
Confidence 000011122 5689999999999865
No 222
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.76 E-value=0.022 Score=55.73 Aligned_cols=71 Identities=18% Similarity=0.195 Sum_probs=44.8
Q ss_pred CceEEEEccCCccHHHHH---HHHHHcC-CCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceeec
Q 010836 77 RKVILHVGPTNSGKTHQA---LSRLESS-SSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~---l~~l~~~-~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~ 152 (499)
++.+++.||+|+|||..+ ...+.+. .++.|+ ..-.++.++...+.. +. ..+.+
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~-~~~~l~~~lk~~~~~---------~~-------------~~~~l 212 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLL-HFPEFIRELKNSISD---------GS-------------VKEKI 212 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEE-EHHHHHHHHHHHHhc---------Cc-------------HHHHH
Confidence 578999999999999995 2333343 445444 333555555443321 00 12344
Q ss_pred cccCCccEEEEecCcccC
Q 010836 153 DVVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 153 ~~l~~~~~iViDEah~~~ 170 (499)
+.+.+++++||||...-.
T Consensus 213 ~~l~~~dlLiIDDiG~e~ 230 (306)
T PRK08939 213 DAVKEAPVLMLDDIGAEQ 230 (306)
T ss_pred HHhcCCCEEEEecCCCcc
Confidence 566889999999997654
No 223
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.69 E-value=0.02 Score=53.55 Aligned_cols=18 Identities=22% Similarity=0.414 Sum_probs=16.2
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
+..+++.||+|+|||..+
T Consensus 42 ~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999885
No 224
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.64 E-value=0.035 Score=62.42 Aligned_cols=97 Identities=20% Similarity=0.173 Sum_probs=59.7
Q ss_pred CCCCchhc-cchHHHhcCCceEEEEccCCccHHHHH--H-HHHHc-CCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCC
Q 010836 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA--L-SRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQ 134 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~--l-~~l~~-~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~ 134 (499)
..|++-|. ++..+.. .+..+++.|+.|+|||+.. + ..+.. +.+++.++||--.|..+.+ ..|+....++.-
T Consensus 345 ~~Ls~eQr~Av~~il~-s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L~e---~tGi~a~TI~sl 420 (988)
T PRK13889 345 LVLSGEQADALAHVTD-GRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENLEG---GSGIASRTIASL 420 (988)
T ss_pred CCCCHHHHHHHHHHhc-CCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHHhh---ccCcchhhHHHH
Confidence 45888998 8877742 2457899999999999983 2 22222 4578888999877755542 123332222111
Q ss_pred eecccCCCceEEEceeeccccCCccEEEEecCcccC
Q 010836 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 135 ~~~~~~~~~~iv~T~e~~~~l~~~~~iViDEah~~~ 170 (499)
......+ .+.+...+++||||+-++.
T Consensus 421 l~~~~~~----------~~~l~~~~vlIVDEASMv~ 446 (988)
T PRK13889 421 EHGWGQG----------RDLLTSRDVLVIDEAGMVG 446 (988)
T ss_pred Hhhhccc----------ccccccCcEEEEECcccCC
Confidence 0000000 1234567899999999986
No 225
>PRK05642 DNA replication initiation factor; Validated
Probab=95.63 E-value=0.053 Score=51.02 Aligned_cols=61 Identities=18% Similarity=0.354 Sum_probs=38.0
Q ss_pred ceEEEEccCCccHHHHHHHH---H-HcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceeecc
Q 010836 78 KVILHVGPTNSGKTHQALSR---L-ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMAD 153 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l~~---l-~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~ 153 (499)
..++++||+|+|||..+-.. + ..+.+++|+. ...+.... .+...
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~-~~~~~~~~-------------------------------~~~~~ 93 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP-LAELLDRG-------------------------------PELLD 93 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee-HHHHHhhh-------------------------------HHHHH
Confidence 56899999999999884221 2 2344555553 33443221 12223
Q ss_pred ccCCccEEEEecCcccC
Q 010836 154 VVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 154 ~l~~~~~iViDEah~~~ 170 (499)
.+.+++++|||++|.+.
T Consensus 94 ~~~~~d~LiiDDi~~~~ 110 (234)
T PRK05642 94 NLEQYELVCLDDLDVIA 110 (234)
T ss_pred hhhhCCEEEEechhhhc
Confidence 34567899999999875
No 226
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.58 E-value=0.035 Score=55.60 Aligned_cols=83 Identities=17% Similarity=0.135 Sum_probs=46.8
Q ss_pred CCceEEEEccCCccHHHHHHH----HHHcCC--CEEEE--ccHHHHHHHHHHHHH-hcCCceeEeeCCeecccCCCceEE
Q 010836 76 VRKVILHVGPTNSGKTHQALS----RLESSS--SGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRA 146 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~----~l~~~~--~~l~l--~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv 146 (499)
++..++++||||+|||+.+.. .+...+ ++.++ =+.|.-+.++.+.+. .+|+++..........
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~-------- 207 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQ-------- 207 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHH--------
Confidence 478999999999999999632 223322 44333 223444555555444 4565554322111100
Q ss_pred EceeeccccCCccEEEEecCccc
Q 010836 147 VTVEMADVVSDYDCAVIDEIQML 169 (499)
Q Consensus 147 ~T~e~~~~l~~~~~iViDEah~~ 169 (499)
..+..+.+.++++||++=..
T Consensus 208 ---~~l~~l~~~DlVLIDTaG~~ 227 (374)
T PRK14722 208 ---LALAELRNKHMVLIDTIGMS 227 (374)
T ss_pred ---HHHHHhcCCCEEEEcCCCCC
Confidence 12233467799999999654
No 227
>PRK09183 transposase/IS protein; Provisional
Probab=95.51 E-value=0.035 Score=53.08 Aligned_cols=73 Identities=21% Similarity=0.247 Sum_probs=42.7
Q ss_pred cCCceEEEEccCCccHHHHHHH----HHHcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEcee
Q 010836 75 KVRKVILHVGPTNSGKTHQALS----RLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVE 150 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l~----~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e 150 (499)
.++.++++.||+|+|||..+.. .+..+.++.|+ +..+|..++.......+.. .
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~-~~~~l~~~l~~a~~~~~~~----------------------~ 156 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFT-TAADLLLQLSTAQRQGRYK----------------------T 156 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEE-eHHHHHHHHHHHHHCCcHH----------------------H
Confidence 3578999999999999999632 23334455554 4445555543322210000 0
Q ss_pred ec-cccCCccEEEEecCcccC
Q 010836 151 MA-DVVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 151 ~~-~~l~~~~~iViDEah~~~ 170 (499)
.+ ..+...+++||||++...
T Consensus 157 ~~~~~~~~~dlLiiDdlg~~~ 177 (259)
T PRK09183 157 TLQRGVMAPRLLIIDEIGYLP 177 (259)
T ss_pred HHHHHhcCCCEEEEcccccCC
Confidence 11 113456899999998764
No 228
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.51 E-value=0.099 Score=53.68 Aligned_cols=83 Identities=20% Similarity=0.210 Sum_probs=47.3
Q ss_pred CCceEEEEccCCccHHHHHHH---HH--HcC-CCEEEE--ccHHHHHHHHHHHHH-hcCCceeEeeCCeecccCCCceEE
Q 010836 76 VRKVILHVGPTNSGKTHQALS---RL--ESS-SSGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRA 146 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~---~l--~~~-~~~l~l--~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv 146 (499)
+++.++++||||+|||+.+.. .+ ..+ .++.++ =|.|.-+.++...+. ..|+++.........
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l--------- 290 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKEL--------- 290 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhH---------
Confidence 367899999999999998532 22 233 455554 455655544444443 355554332111000
Q ss_pred EceeeccccCCccEEEEecCccc
Q 010836 147 VTVEMADVVSDYDCAVIDEIQML 169 (499)
Q Consensus 147 ~T~e~~~~l~~~~~iViDEah~~ 169 (499)
...+..+.++++|+||.+-..
T Consensus 291 --~~~l~~~~~~DlVlIDt~G~~ 311 (424)
T PRK05703 291 --AKALEQLRDCDVILIDTAGRS 311 (424)
T ss_pred --HHHHHHhCCCCEEEEeCCCCC
Confidence 012223457899999999664
No 229
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=95.49 E-value=0.066 Score=60.71 Aligned_cols=97 Identities=18% Similarity=0.143 Sum_probs=63.7
Q ss_pred CCCCchhc-cchHHHhcCCceEEEEccCCccHHHHH--H-HHHH-cCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCC
Q 010836 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA--L-SRLE-SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQ 134 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~--l-~~l~-~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~ 134 (499)
..|++-|. ++..+. ..++.+++.|+.|+|||+.. + .... .+.+++.++||--.|..+.+ ..|+...-+.+.
T Consensus 380 ~~Ls~eQ~~Av~~i~-~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L~e---~~Gi~a~TIas~ 455 (1102)
T PRK13826 380 ARLSDEQKTAIEHVA-GPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGLEK---EAGIQSRTLSSW 455 (1102)
T ss_pred CCCCHHHHHHHHHHh-ccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHHHH---hhCCCeeeHHHH
Confidence 56899999 877663 45789999999999999994 2 3232 34577888999777765543 235555443332
Q ss_pred eecccCCCceEEEceeeccccCCccEEEEecCcccC
Q 010836 135 EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 135 ~~~~~~~~~~iv~T~e~~~~l~~~~~iViDEah~~~ 170 (499)
......+ -..+..-+++||||+-++.
T Consensus 456 ll~~~~~----------~~~l~~~~vlVIDEAsMv~ 481 (1102)
T PRK13826 456 ELRWNQG----------RDQLDNKTVFVLDEAGMVA 481 (1102)
T ss_pred HhhhccC----------ccCCCCCcEEEEECcccCC
Confidence 1111000 0234567899999999986
No 230
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.39 E-value=0.036 Score=55.31 Aligned_cols=82 Identities=23% Similarity=0.287 Sum_probs=47.6
Q ss_pred CCceEEEEccCCccHHHHH----HHHH--HcCCCE-EEE-ccHHHHHHHHHHHHH-hcCCceeEeeCCeecccCCCceEE
Q 010836 76 VRKVILHVGPTNSGKTHQA----LSRL--ESSSSG-IYC-GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRA 146 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~----l~~l--~~~~~~-l~l-~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv 146 (499)
+++.+.++||||-|||+.. .... ....++ ++- =-.|.=|.++.+... -+|+++.++.....-.
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~-------- 273 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELA-------- 273 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHH--------
Confidence 3889999999999999983 2222 233444 333 344555555555544 4566654432211100
Q ss_pred EceeeccccCCccEEEEecCcc
Q 010836 147 VTVEMADVVSDYDCAVIDEIQM 168 (499)
Q Consensus 147 ~T~e~~~~l~~~~~iViDEah~ 168 (499)
+-+..+.++|+|.||=+=+
T Consensus 274 ---~ai~~l~~~d~ILVDTaGr 292 (407)
T COG1419 274 ---EAIEALRDCDVILVDTAGR 292 (407)
T ss_pred ---HHHHHhhcCCEEEEeCCCC
Confidence 1223457779999998754
No 231
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.34 E-value=0.023 Score=48.55 Aligned_cols=16 Identities=50% Similarity=0.746 Sum_probs=14.3
Q ss_pred eEEEEccCCccHHHHH
Q 010836 79 VILHVGPTNSGKTHQA 94 (499)
Q Consensus 79 ~vli~apTGsGKT~~~ 94 (499)
+|++.||+|+|||..+
T Consensus 1 ~vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 4899999999999775
No 232
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.30 E-value=0.055 Score=59.62 Aligned_cols=117 Identities=15% Similarity=0.156 Sum_probs=78.0
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHHcCC-------CeEEEEcCCCCHHHHHHHHHHhcC--CCCCccEEEec--chhhccc
Q 010836 238 QTGDCIVTF-SRHAIYRLKKAIESRGK-------HLCSIVYGSLPPETRTRQATRFND--ASSEFDVLVAS--DAIGMGL 305 (499)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~-------~~v~~~hg~l~~~~R~~~~~~f~~--~~g~~~iLvaT--~~~~~Gi 305 (499)
.+|.++||| |....+.+.+.+.+.+. ..+..= + -...++..+++.|++ ..+.-.||+|+ ..+.+||
T Consensus 521 ~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E-~-~~~~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEGI 598 (705)
T TIGR00604 521 IPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVE-T-KDAQETSDALERYKQAVSEGRGAVLLSVAGGKVSEGI 598 (705)
T ss_pred CCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEe-C-CCcchHHHHHHHHHHHHhcCCceEEEEecCCcccCcc
Confidence 467788888 88888888888765321 122221 2 122466788999965 11344599999 8899999
Q ss_pred ccc---ccEEEEcccccccCc------c------------c----cccChhhHHhhhccCCCCCCCCCcEEEEEEcCC
Q 010836 306 NLN---ISRIIFSTMKKFDGV------E------------L----RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 306 dip---v~~VI~~~~~~~~~~------~------------~----~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~ 358 (499)
|++ .+.||..+++...+. + . .........|-+||+=|...+ .|.++.++..
T Consensus 599 Df~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D--~G~iillD~R 674 (705)
T TIGR00604 599 DFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDD--YGSIVLLDKR 674 (705)
T ss_pred ccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCc--eEEEEEEehh
Confidence 994 899999998762221 0 0 011235678999999999874 5777777543
No 233
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.24 E-value=0.02 Score=59.48 Aligned_cols=18 Identities=44% Similarity=0.536 Sum_probs=16.0
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
.+..+++||.|+|||+.|
T Consensus 35 ~ha~Lf~Gp~G~GKTT~A 52 (491)
T PRK14964 35 PQSILLVGASGVGKTTCA 52 (491)
T ss_pred CceEEEECCCCccHHHHH
Confidence 357899999999999986
No 234
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.22 E-value=0.034 Score=57.88 Aligned_cols=71 Identities=20% Similarity=0.263 Sum_probs=43.7
Q ss_pred ceEEEEccCCccHHHHH---HHHHHcC---CCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceee
Q 010836 78 KVILHVGPTNSGKTHQA---LSRLESS---SSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~---l~~l~~~---~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~ 151 (499)
..+++.||+|+|||..+ ...+.+. .+++|+ +...+..+....+.... ..+.
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi-~~~~~~~~~~~~~~~~~----------------------~~~~ 205 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV-TSEKFTNDFVNALRNNT----------------------MEEF 205 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE-EHHHHHHHHHHHHHcCc----------------------HHHH
Confidence 46899999999999985 2233332 234444 55566665554443210 0122
Q ss_pred ccccCCccEEEEecCcccCC
Q 010836 152 ADVVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 152 ~~~l~~~~~iViDEah~~~~ 171 (499)
...+.++++++|||+|.+..
T Consensus 206 ~~~~~~~dlLiiDDi~~l~~ 225 (450)
T PRK00149 206 KEKYRSVDVLLIDDIQFLAG 225 (450)
T ss_pred HHHHhcCCEEEEehhhhhcC
Confidence 23445688999999999863
No 235
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.16 E-value=0.048 Score=56.44 Aligned_cols=81 Identities=20% Similarity=0.212 Sum_probs=52.3
Q ss_pred CceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEce---
Q 010836 77 RKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTV--- 149 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~--- 149 (499)
+..+++.|++|+|||+.+++... .+.+++|+.- .+-..|+..+...+|....- +.+...
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~-Ees~~qi~~ra~rlg~~~~~-------------l~~~~e~~l 145 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSG-EESASQIKLRAERLGLPSDN-------------LYLLAETNL 145 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc-cccHHHHHHHHHHcCCChhc-------------EEEeCCCCH
Confidence 78999999999999999766553 3567888864 34456777777766643210 111111
Q ss_pred -eecccc--CCccEEEEecCcccCC
Q 010836 150 -EMADVV--SDYDCAVIDEIQMLGC 171 (499)
Q Consensus 150 -e~~~~l--~~~~~iViDEah~~~~ 171 (499)
++...+ .+.+++|||+++.+..
T Consensus 146 ~~i~~~i~~~~~~lVVIDSIq~l~~ 170 (446)
T PRK11823 146 EAILATIEEEKPDLVVIDSIQTMYS 170 (446)
T ss_pred HHHHHHHHhhCCCEEEEechhhhcc
Confidence 111111 4689999999997753
No 236
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.14 E-value=0.02 Score=54.85 Aligned_cols=26 Identities=42% Similarity=0.589 Sum_probs=20.8
Q ss_pred cCCceEEEEccCCccHHHHH--HHHHHc
Q 010836 75 KVRKVILHVGPTNSGKTHQA--LSRLES 100 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~--l~~l~~ 100 (499)
++..++++.||||||||+.| +..+++
T Consensus 95 L~KSNILLiGPTGsGKTlLAqTLAk~Ln 122 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQTLAKILN 122 (408)
T ss_pred eeeccEEEECCCCCcHHHHHHHHHHHhC
Confidence 56789999999999999886 444443
No 237
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.05 E-value=0.026 Score=55.03 Aligned_cols=59 Identities=15% Similarity=0.045 Sum_probs=41.5
Q ss_pred ccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----c---CCCEEEEccHHHH
Q 010836 55 KKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S---SSSGIYCGPLRLL 113 (499)
Q Consensus 55 ~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~----~---~~~~l~l~P~r~L 113 (499)
.-+|+.-.+..|. ++.....-.-+-|.+.|+.|||||+.|+.+-+ + ..+.|+.=|+..+
T Consensus 222 ~vwGi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpv 288 (436)
T COG1875 222 EVWGIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPV 288 (436)
T ss_pred hhhccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCc
Confidence 3467877777888 88887555567889999999999999864432 2 2355665665443
No 238
>PF13871 Helicase_C_4: Helicase_C-like
Probab=95.04 E-value=0.061 Score=51.34 Aligned_cols=65 Identities=25% Similarity=0.217 Sum_probs=49.2
Q ss_pred HHHHHhcCCCCCccEEEecchhhcccccccc-E--------EEEcccccccCccccccChhhHHhhhccCCCCCCCCCcE
Q 010836 280 RQATRFNDASSEFDVLVASDAIGMGLNLNIS-R--------IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 350 (499)
Q Consensus 280 ~~~~~f~~~~g~~~iLvaT~~~~~Gidipv~-~--------VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g 350 (499)
...+.|.+ |+.+|+|.|+++++|+.+..+ . -|...+ |++....+|..||+.|.++....-
T Consensus 52 ~e~~~F~~--g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~---------pwsad~aiQ~~GR~hRsnQ~~~P~ 120 (278)
T PF13871_consen 52 AEKQAFMD--GEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLEL---------PWSADKAIQQFGRTHRSNQVSAPE 120 (278)
T ss_pred HHHHHHhC--CCceEEEEecccccccchhccccCCCCCceEEEEeeC---------CCCHHHHHHHhccccccccccCCE
Confidence 45668999 999999999999999999543 1 223333 889999999999999999853334
Q ss_pred EEEEE
Q 010836 351 EVTCL 355 (499)
Q Consensus 351 ~~~~~ 355 (499)
+++..
T Consensus 121 y~~l~ 125 (278)
T PF13871_consen 121 YRFLV 125 (278)
T ss_pred EEEee
Confidence 44333
No 239
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=95.01 E-value=0.052 Score=48.70 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=43.0
Q ss_pred CCceEEEEccCCccHHHHHH---HHHHcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceeec
Q 010836 76 VRKVILHVGPTNSGKTHQAL---SRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l---~~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~ 152 (499)
+++++++.||+|+|||..+. ..+.+.+..+..++..+|...+..... .+. ..+.+
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~---------~~~-------------~~~~~ 103 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRS---------DGS-------------YEELL 103 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHC---------CTT-------------HCHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccccccc---------ccc-------------hhhhc
Confidence 47899999999999999963 334445544444666667666532100 000 11234
Q ss_pred cccCCccEEEEecCccc
Q 010836 153 DVVSDYDCAVIDEIQML 169 (499)
Q Consensus 153 ~~l~~~~~iViDEah~~ 169 (499)
..+.+++++||||.=..
T Consensus 104 ~~l~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 104 KRLKRVDLLILDDLGYE 120 (178)
T ss_dssp HHHHTSSCEEEETCTSS
T ss_pred CccccccEeccccccee
Confidence 55678999999998543
No 240
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=94.99 E-value=0.061 Score=54.12 Aligned_cols=81 Identities=19% Similarity=0.172 Sum_probs=51.0
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEce--
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTV-- 149 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~-- 149 (499)
.+..+++.|++|+|||+.+++... .+++++|+.-. +-..|+..+...+|.... .+.+...
T Consensus 81 ~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E-Es~~qi~~Ra~rlg~~~~-------------~l~l~~e~~ 146 (372)
T cd01121 81 PGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE-ESPEQIKLRADRLGISTE-------------NLYLLAETN 146 (372)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC-cCHHHHHHHHHHcCCCcc-------------cEEEEccCc
Confidence 378999999999999999866543 34678888543 334567666666654321 1111111
Q ss_pred --eeccc--cCCccEEEEecCcccC
Q 010836 150 --EMADV--VSDYDCAVIDEIQMLG 170 (499)
Q Consensus 150 --e~~~~--l~~~~~iViDEah~~~ 170 (499)
++... ..+.+++|||+++.+.
T Consensus 147 le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 147 LEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred HHHHHHHHHhcCCcEEEEcchHHhh
Confidence 11111 1478999999999874
No 241
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=94.92 E-value=0.044 Score=54.44 Aligned_cols=21 Identities=33% Similarity=0.297 Sum_probs=17.3
Q ss_pred CceEEEEccCCccHHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALSR 97 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~ 97 (499)
...++++||+|+|||..+...
T Consensus 51 ~~~~ll~GppG~GKT~la~~i 71 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANII 71 (328)
T ss_pred CCcEEEECCCCccHHHHHHHH
Confidence 457999999999999887533
No 242
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.92 E-value=0.034 Score=40.03 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=20.5
Q ss_pred CceEEEEccCCccHHHH--HHHHHHcC
Q 010836 77 RKVILHVGPTNSGKTHQ--ALSRLESS 101 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~--~l~~l~~~ 101 (499)
+..+++.||+|||||+. |++.++-+
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~L~~ 49 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTVLYG 49 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 46899999999999999 57766543
No 243
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.90 E-value=0.014 Score=60.10 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=16.0
Q ss_pred ceEEEEccCCccHHHHHHH
Q 010836 78 KVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l~ 96 (499)
+.++++||.|+|||+.|..
T Consensus 41 ha~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARI 59 (484)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4579999999999999743
No 244
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=94.82 E-value=0.046 Score=56.06 Aligned_cols=71 Identities=20% Similarity=0.288 Sum_probs=42.2
Q ss_pred ceEEEEccCCccHHHHHH---HHHHc---CCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceee
Q 010836 78 KVILHVGPTNSGKTHQAL---SRLES---SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l---~~l~~---~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~ 151 (499)
..+++.||+|+|||..+- ..+.+ +.+++|+ +...+..++...+... . ..+.
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi-~~~~~~~~~~~~~~~~---------~-------------~~~~ 193 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYV-SSEKFTNDFVNALRNN---------K-------------MEEF 193 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEE-EHHHHHHHHHHHHHcC---------C-------------HHHH
Confidence 468999999999999852 23333 2355665 4444554444433311 0 0112
Q ss_pred ccccCCccEEEEecCcccCC
Q 010836 152 ADVVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 152 ~~~l~~~~~iViDEah~~~~ 171 (499)
...+...++++|||+|.+..
T Consensus 194 ~~~~~~~dlLiiDDi~~l~~ 213 (405)
T TIGR00362 194 KEKYRSVDLLLIDDIQFLAG 213 (405)
T ss_pred HHHHHhCCEEEEehhhhhcC
Confidence 22345678999999998753
No 245
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.80 E-value=0.055 Score=49.36 Aligned_cols=86 Identities=23% Similarity=0.169 Sum_probs=45.2
Q ss_pred ceEEEEccCCccHHHHHH----HHHHcCCCEEEE--ccHHHHHHHHHHHHH-hcCCceeEeeCCeecccCCCceEEEcee
Q 010836 78 KVILHVGPTNSGKTHQAL----SRLESSSSGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRAVTVE 150 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l----~~l~~~~~~l~l--~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv~T~e 150 (499)
+.++++||||+|||+.+. ....++.++.++ =..|.-|.++.+.+. .+|+++....-..... .+ ..+
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~----~~---~~~ 74 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPA----EI---ARE 74 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHH----HH---HHH
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhH----HH---HHH
Confidence 568999999999999952 233344455333 345666666665555 4566654322111000 00 001
Q ss_pred eccc--cCCccEEEEecCcccC
Q 010836 151 MADV--VSDYDCAVIDEIQMLG 170 (499)
Q Consensus 151 ~~~~--l~~~~~iViDEah~~~ 170 (499)
.+.. .+++++|+||-+-+..
T Consensus 75 ~l~~~~~~~~D~vlIDT~Gr~~ 96 (196)
T PF00448_consen 75 ALEKFRKKGYDLVLIDTAGRSP 96 (196)
T ss_dssp HHHHHHHTTSSEEEEEE-SSSS
T ss_pred HHHHHhhcCCCEEEEecCCcch
Confidence 1111 1468999999986643
No 246
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.77 E-value=0.049 Score=51.36 Aligned_cols=51 Identities=24% Similarity=0.291 Sum_probs=38.3
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCc
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVS 127 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~r~La~q~~~~l~~~g~~ 127 (499)
.+..+++.||+|+|||+.+++.+. ++.+++|+. +.+-..++.+++..+|..
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs-~ee~~~~i~~~~~~~g~~ 74 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA-LEEHPVQVRRNMAQFGWD 74 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE-eeCCHHHHHHHHHHhCCC
Confidence 388999999999999999876554 345778875 445666777777776654
No 247
>PTZ00293 thymidine kinase; Provisional
Probab=94.69 E-value=0.064 Score=49.11 Aligned_cols=81 Identities=22% Similarity=0.235 Sum_probs=45.7
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCc-eeEeeCCeecccCCCceEEEce-
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVS-CDLITGQEREEVDGAKHRAVTV- 149 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~r~La~q~~~~l~~~g~~-~~~~~g~~~~~~~~~~~iv~T~- 149 (499)
.|+..++.||.+||||+..++.+. .+.+++++-|...- |.. +.. +..-.|. ..+-+.++.
T Consensus 3 ~G~i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~Dt------R~~--~~~~I~Sh~g~------~~~a~~v~~~ 68 (211)
T PTZ00293 3 RGTISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSKDT------RYS--DEQNISSHDKQ------MLKAIKVSKL 68 (211)
T ss_pred ceEEEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEecccc------cCC--CCCcEEecCCC------cceeEEcCCH
Confidence 367889999999999987766554 34567777775321 110 111 1000011 011111111
Q ss_pred -eeccccCCccEEEEecCcccC
Q 010836 150 -EMADVVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 150 -e~~~~l~~~~~iViDEah~~~ 170 (499)
++...+.++++|.|||+|-+.
T Consensus 69 ~e~~~~~~~~dvI~IDEaQFf~ 90 (211)
T PTZ00293 69 KEVLETAKNYDVIAIDEGQFFP 90 (211)
T ss_pred HHHHHhccCCCEEEEEchHhhH
Confidence 333334788999999999874
No 248
>PRK14974 cell division protein FtsY; Provisional
Probab=94.61 E-value=0.051 Score=53.77 Aligned_cols=87 Identities=17% Similarity=0.172 Sum_probs=48.5
Q ss_pred CceEEEEccCCccHHHHH---HHHHHcC-CCEEEEc--cHHH-HHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEce
Q 010836 77 RKVILHVGPTNSGKTHQA---LSRLESS-SSGIYCG--PLRL-LAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTV 149 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~---l~~l~~~-~~~l~l~--P~r~-La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~ 149 (499)
...++++|++|+|||+.+ ...+... .+++++. +.|. ...|+......+|+++.. +...... ..+ ..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v~~--~~~g~dp--~~v---~~ 212 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAERLGVKVIK--HKYGADP--AAV---AY 212 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHHcCCceec--ccCCCCH--HHH---HH
Confidence 568899999999999974 2334444 4555553 2344 445555555567766532 1110000 000 00
Q ss_pred eecc--ccCCccEEEEecCcccC
Q 010836 150 EMAD--VVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 150 e~~~--~l~~~~~iViDEah~~~ 170 (499)
+.+. ...++++|+||.+.++.
T Consensus 213 ~ai~~~~~~~~DvVLIDTaGr~~ 235 (336)
T PRK14974 213 DAIEHAKARGIDVVLIDTAGRMH 235 (336)
T ss_pred HHHHHHHhCCCCEEEEECCCccC
Confidence 1111 12568999999999875
No 249
>PHA00729 NTP-binding motif containing protein
Probab=94.60 E-value=0.15 Score=47.27 Aligned_cols=20 Identities=35% Similarity=0.308 Sum_probs=16.9
Q ss_pred CceEEEEccCCccHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~ 96 (499)
-.++++.|++|+|||+.|..
T Consensus 17 f~nIlItG~pGvGKT~LA~a 36 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALK 36 (226)
T ss_pred eEEEEEECCCCCCHHHHHHH
Confidence 35799999999999998743
No 250
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.59 E-value=0.018 Score=61.19 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=16.2
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
.+.++++||.|+|||+.|.
T Consensus 37 ~HAyLF~GPpGvGKTTlAr 55 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIAR 55 (702)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3567999999999999973
No 251
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.54 E-value=0.047 Score=55.87 Aligned_cols=34 Identities=26% Similarity=0.279 Sum_probs=24.6
Q ss_pred Cchhc-cchHHHhcCCceEEEEccCCccHHHHHHH
Q 010836 63 TRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 63 ~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~ 96 (499)
.+.|. .+-.+....+--+++.||||||||+.-..
T Consensus 243 ~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 243 SPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred CHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 44444 55555556678899999999999988433
No 252
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.50 E-value=0.069 Score=50.99 Aligned_cols=20 Identities=40% Similarity=0.552 Sum_probs=17.2
Q ss_pred CceEEEEccCCccHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~ 96 (499)
.-+.+..||.|+|||.+++.
T Consensus 57 lp~~LFyGPpGTGKTStala 76 (346)
T KOG0989|consen 57 LPHYLFYGPPGTGKTSTALA 76 (346)
T ss_pred CceEEeeCCCCCcHhHHHHH
Confidence 56789999999999999754
No 253
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.49 E-value=0.034 Score=61.55 Aligned_cols=19 Identities=37% Similarity=0.530 Sum_probs=16.2
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
.+.+|++||.|+|||+.+.
T Consensus 37 ~Ha~Lf~Gp~G~GKTt~A~ 55 (824)
T PRK07764 37 NHAYLFSGPRGCGKTSSAR 55 (824)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4557999999999999973
No 254
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.44 E-value=0.028 Score=55.78 Aligned_cols=39 Identities=31% Similarity=0.290 Sum_probs=28.2
Q ss_pred cCCceEEEEccCCccHHHHH---HHHHHcCCCEEEEccHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA---LSRLESSSSGIYCGPLRLL 113 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~---l~~l~~~~~~l~l~P~r~L 113 (499)
..+++++++||||||||+.. +..+....+.+.+-.+.+|
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El 201 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLEL 201 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccc
Confidence 36899999999999999985 2233344566766666655
No 255
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=94.44 E-value=0.077 Score=50.18 Aligned_cols=65 Identities=26% Similarity=0.341 Sum_probs=38.6
Q ss_pred CceEEEEccCCccHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceeeccccC
Q 010836 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVVS 156 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~~l~ 156 (499)
=.++++.||+|-|||+.|.. ++. ++|.++....|..-.... + + ..++..+.
T Consensus 52 lDHvLl~GPPGlGKTTLA~I--------------------IA~---Emgvn~k~tsGp~leK~g--D-l---aaiLt~Le 102 (332)
T COG2255 52 LDHVLLFGPPGLGKTTLAHI--------------------IAN---ELGVNLKITSGPALEKPG--D-L---AAILTNLE 102 (332)
T ss_pred cCeEEeeCCCCCcHHHHHHH--------------------HHH---HhcCCeEecccccccChh--h-H---HHHHhcCC
Confidence 36799999999999976532 222 334444443332211100 0 0 01233457
Q ss_pred CccEEEEecCcccC
Q 010836 157 DYDCAVIDEIQMLG 170 (499)
Q Consensus 157 ~~~~iViDEah~~~ 170 (499)
.-|++.|||+|.+.
T Consensus 103 ~~DVLFIDEIHrl~ 116 (332)
T COG2255 103 EGDVLFIDEIHRLS 116 (332)
T ss_pred cCCeEEEehhhhcC
Confidence 78999999999986
No 256
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.41 E-value=0.048 Score=50.99 Aligned_cols=51 Identities=25% Similarity=0.322 Sum_probs=34.8
Q ss_pred CCceEEEEccCCccHHHHHHHHH----Hc-CCCEEEEccHHHHHHHHHHHHHhcCCc
Q 010836 76 VRKVILHVGPTNSGKTHQALSRL----ES-SSSGIYCGPLRLLAWEVAKRLNKANVS 127 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l----~~-~~~~l~l~P~r~La~q~~~~l~~~g~~ 127 (499)
.+..+++.||+|+|||..+++.+ .+ +.+++|+. +.+-..++.+.++.+|..
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs-~ee~~~~l~~~~~s~g~d 73 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVS-FEEPPEELIENMKSFGWD 73 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEE-SSS-HHHHHHHHHTTTS-
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEE-ecCCHHHHHHHHHHcCCc
Confidence 48899999999999999987655 34 56778874 233346666677766654
No 257
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=94.41 E-value=0.089 Score=45.79 Aligned_cols=31 Identities=39% Similarity=0.455 Sum_probs=21.9
Q ss_pred EEEEccCCccHHHHHHHHH----HcCCCEEEEccH
Q 010836 80 ILHVGPTNSGKTHQALSRL----ESSSSGIYCGPL 110 (499)
Q Consensus 80 vli~apTGsGKT~~~l~~l----~~~~~~l~l~P~ 110 (499)
+++.||+|+|||+.+...+ ..++.++|+...
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 6899999999999864332 235667777443
No 258
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.41 E-value=0.35 Score=49.51 Aligned_cols=110 Identities=10% Similarity=0.139 Sum_probs=69.7
Q ss_pred CCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchh--hccccc-cccEEEEc
Q 010836 240 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAI--GMGLNL-NISRIIFS 315 (499)
Q Consensus 240 ~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~--~~Gidi-pv~~VI~~ 315 (499)
..++++. +.-+-.++...+++... ....+|--.+...-.+.-+.|-. |...||+-|.=+ =+-.+| .|+.||+|
T Consensus 553 s~~LiyIPSYfDFVRvRNy~K~e~i-~F~~i~EYssk~~vsRAR~lF~q--gr~~vlLyTER~hffrR~~ikGVk~vVfY 629 (698)
T KOG2340|consen 553 SGILIYIPSYFDFVRVRNYMKKEEI-SFVMINEYSSKSKVSRARELFFQ--GRKSVLLYTERAHFFRRYHIKGVKNVVFY 629 (698)
T ss_pred CceEEEecchhhHHHHHHHhhhhhc-chHHHhhhhhHhhhhHHHHHHHh--cCceEEEEehhhhhhhhheecceeeEEEe
Confidence 3456655 77777778888877653 33333322222222344566887 889999999643 345677 59999999
Q ss_pred ccccccCccccccChhhHHhhhccCCCCCCC-CCcEEEEEEcCC
Q 010836 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-FPVGEVTCLDSE 358 (499)
Q Consensus 316 ~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~-~~~g~~~~~~~~ 358 (499)
.++.+ |.=..+++.+.+|+.-.|.. ...-.|.+++..
T Consensus 630 qpP~~------P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytK 667 (698)
T KOG2340|consen 630 QPPNN------PHFYSEIINMSDKTTSQGNTDLDIFTVRILYTK 667 (698)
T ss_pred cCCCC------cHHHHHHHhhhhhhhccCCccccceEEEEEeec
Confidence 98643 44567888999888655532 123456666553
No 259
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=94.41 E-value=0.21 Score=44.62 Aligned_cols=33 Identities=24% Similarity=0.419 Sum_probs=22.6
Q ss_pred ceEEEEccCCccHHHHHHHHHH----cCCCEEEEccH
Q 010836 78 KVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPL 110 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~ 110 (499)
+..++.||.+||||+..++.+. .+.+++++-|.
T Consensus 2 ~l~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~ 38 (176)
T PF00265_consen 2 KLEFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPA 38 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEES
T ss_pred EEEEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEec
Confidence 5678999999999988766553 23455555554
No 260
>PLN03025 replication factor C subunit; Provisional
Probab=94.40 E-value=0.24 Score=48.96 Aligned_cols=18 Identities=33% Similarity=0.584 Sum_probs=15.7
Q ss_pred ceEEEEccCCccHHHHHH
Q 010836 78 KVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l 95 (499)
.+++++||+|+|||+.+.
T Consensus 35 ~~lll~Gp~G~GKTtla~ 52 (319)
T PLN03025 35 PNLILSGPPGTGKTTSIL 52 (319)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 468999999999999864
No 261
>PRK13342 recombination factor protein RarA; Reviewed
Probab=94.36 E-value=0.17 Score=52.06 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=17.1
Q ss_pred CceEEEEccCCccHHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALSR 97 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~ 97 (499)
...+++.||+|+|||+.+-..
T Consensus 36 ~~~ilL~GppGtGKTtLA~~i 56 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARII 56 (413)
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 357899999999999987443
No 262
>PHA00350 putative assembly protein
Probab=94.28 E-value=0.42 Score=48.24 Aligned_cols=29 Identities=17% Similarity=0.117 Sum_probs=21.3
Q ss_pred eEEEEccCCccHHHHHHHH----HHcCCCEEEE
Q 010836 79 VILHVGPTNSGKTHQALSR----LESSSSGIYC 107 (499)
Q Consensus 79 ~vli~apTGsGKT~~~l~~----l~~~~~~l~l 107 (499)
..++.|..|||||+.+... .++.++.+|.
T Consensus 3 I~l~tG~pGSGKT~~aV~~~i~palk~GR~V~T 35 (399)
T PHA00350 3 IYAIVGRPGSYKSYEAVVYHIIPALKDGRKVIT 35 (399)
T ss_pred eEEEecCCCCchhHHHHHHHHHHHHHCCCEEEE
Confidence 4689999999999998542 2455676664
No 263
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=94.25 E-value=0.086 Score=53.21 Aligned_cols=21 Identities=19% Similarity=0.341 Sum_probs=18.5
Q ss_pred cCCceEEEEccCCccHHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l 95 (499)
.++.|++..||+|+|||..|.
T Consensus 207 e~~~Nli~lGp~GTGKThla~ 227 (449)
T TIGR02688 207 EPNYNLIELGPKGTGKSYIYN 227 (449)
T ss_pred hcCCcEEEECCCCCCHHHHHH
Confidence 468999999999999998863
No 264
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.25 E-value=0.028 Score=60.66 Aligned_cols=19 Identities=26% Similarity=0.347 Sum_probs=15.8
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
.+-+|++||.|+|||+.+.
T Consensus 38 ~HAyLFtGPpGvGKTTlAr 56 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSR 56 (830)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3457899999999999864
No 265
>PRK04195 replication factor C large subunit; Provisional
Probab=94.20 E-value=0.11 Score=54.69 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=19.2
Q ss_pred CceEEEEccCCccHHHHHHHHHHc
Q 010836 77 RKVILHVGPTNSGKTHQALSRLES 100 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~l~~ 100 (499)
.+.++++||+|+|||+.+-....+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~e 62 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALAND 62 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHH
Confidence 578999999999999987544443
No 266
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.19 E-value=0.089 Score=54.39 Aligned_cols=71 Identities=23% Similarity=0.395 Sum_probs=43.3
Q ss_pred ceEEEEccCCccHHHHH---HHHHH-cCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceeecc
Q 010836 78 KVILHVGPTNSGKTHQA---LSRLE-SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMAD 153 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~---l~~l~-~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~ 153 (499)
+.+++.||+|+|||..+ ...+. .+.+++|+.. ..+..+....+.. +.. .+...
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~-~~f~~~~~~~l~~---------~~~-------------~~f~~ 198 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS-ELFTEHLVSAIRS---------GEM-------------QRFRQ 198 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH-HHHHHHHHHHHhc---------chH-------------HHHHH
Confidence 46899999999999985 23333 3456666643 4455544444331 000 01112
Q ss_pred ccCCccEEEEecCcccCC
Q 010836 154 VVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 154 ~l~~~~~iViDEah~~~~ 171 (499)
.....++++|||+|.+..
T Consensus 199 ~~~~~dvLiIDDiq~l~~ 216 (445)
T PRK12422 199 FYRNVDALFIEDIEVFSG 216 (445)
T ss_pred HcccCCEEEEcchhhhcC
Confidence 235689999999999864
No 267
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.18 E-value=0.14 Score=48.92 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=36.0
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEc---cHHHHHHHHHHHHHhcCCc
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCG---PLRLLAWEVAKRLNKANVS 127 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~---P~r~La~q~~~~l~~~g~~ 127 (499)
.+..++|.||+|+|||..+++.+. ++.+++|+. |...+..++..+...+|..
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~d 93 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGVD 93 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCCC
Confidence 488999999999999999876554 345888884 4444455555555555443
No 268
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=94.15 E-value=0.091 Score=51.58 Aligned_cols=20 Identities=35% Similarity=0.365 Sum_probs=16.5
Q ss_pred CceEEEEccCCccHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~ 96 (499)
..++++.||+|+|||..+..
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ 49 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHI 49 (305)
T ss_pred CCeEEEECCCCCCHHHHHHH
Confidence 35689999999999987643
No 269
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.15 E-value=0.12 Score=51.76 Aligned_cols=83 Identities=13% Similarity=0.114 Sum_probs=44.3
Q ss_pred CceEEEEccCCccHHHHHHH---HHH-cCCCEEEE-c-cHHHHHHHHHHHH-HhcCCceeEeeCCeecccCCCceEEEce
Q 010836 77 RKVILHVGPTNSGKTHQALS---RLE-SSSSGIYC-G-PLRLLAWEVAKRL-NKANVSCDLITGQEREEVDGAKHRAVTV 149 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~---~l~-~~~~~l~l-~-P~r~La~q~~~~l-~~~g~~~~~~~g~~~~~~~~~~~iv~T~ 149 (499)
.+.+.++||||+|||+.+.. .+. ++.++.++ + |.|.-+.++.... ...|+++...... .. + .
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~--~~------L---~ 309 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDE--AA------M---T 309 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCH--HH------H---H
Confidence 47889999999999999621 222 33455444 3 5564444433333 3445444321100 00 0 0
Q ss_pred eecccc---CCccEEEEecCcccC
Q 010836 150 EMADVV---SDYDCAVIDEIQMLG 170 (499)
Q Consensus 150 e~~~~l---~~~~~iViDEah~~~ 170 (499)
+.+..+ .++++|+||-+=+..
T Consensus 310 ~aL~~lk~~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 310 RALTYFKEEARVDYILIDTAGKNY 333 (436)
T ss_pred HHHHHHHhccCCCEEEEeCccccC
Confidence 111112 258999999886643
No 270
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=94.03 E-value=0.078 Score=50.94 Aligned_cols=97 Identities=13% Similarity=0.020 Sum_probs=63.5
Q ss_pred CCceEEEEccCCccHHHHHH----H-HHHcCCCEEEEccHHHHHHHHHHHHHhcCCce---eEeeCCe--ecccCCCceE
Q 010836 76 VRKVILHVGPTNSGKTHQAL----S-RLESSSSGIYCGPLRLLAWEVAKRLNKANVSC---DLITGQE--REEVDGAKHR 145 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l----~-~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~~---~~~~g~~--~~~~~~~~~i 145 (499)
.+.-.++--.||.||-.+.. . ++...++.|++..+-.|-.+..+.++..|... .-+..-. ....-...++
T Consensus 61 ~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DIG~~~i~v~~l~~~~~~~~~~~~~Gvl 140 (303)
T PF13872_consen 61 SRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDIGADNIPVHPLNKFKYGDIIRLKEGVL 140 (303)
T ss_pred cCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHhCCCcccceechhhccCcCCCCCCCcc
Confidence 47788888899999998853 2 23334579999999999999999999765432 2111110 0111244578
Q ss_pred EEceeec------------------ccc--CCccEEEEecCcccCCC
Q 010836 146 AVTVEMA------------------DVV--SDYDCAVIDEIQMLGCK 172 (499)
Q Consensus 146 v~T~e~~------------------~~l--~~~~~iViDEah~~~~~ 172 (499)
++|+-.+ +|+ ..-.+||+||||.....
T Consensus 141 F~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~ 187 (303)
T PF13872_consen 141 FSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNL 187 (303)
T ss_pred chhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCC
Confidence 8886221 232 33469999999998754
No 271
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=93.93 E-value=0.19 Score=49.49 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=20.3
Q ss_pred ceEEEEccCCccHHHHHHHHHHc-CCCEEEEccH
Q 010836 78 KVILHVGPTNSGKTHQALSRLES-SSSGIYCGPL 110 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l~~l~~-~~~~l~l~P~ 110 (499)
+.++++||+|+|||..+-..... +...+++.+.
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~ 77 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGS 77 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHHHhCccceEeccC
Confidence 45566999999999986433322 2334455443
No 272
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=93.91 E-value=0.95 Score=48.29 Aligned_cols=121 Identities=12% Similarity=0.105 Sum_probs=72.5
Q ss_pred HHHHhhhccCCCccccCCCCCchhccchHHHhcCCceEEEEccCCccHHHHHH---HHH---HcCCCEEEEccHHHHHHH
Q 010836 43 VIIRSYCSGSGMKKFDFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQAL---SRL---ESSSSGIYCGPLRLLAWE 116 (499)
Q Consensus 43 ~~l~~~l~~~~~~~~~~~~l~~~q~~~~~~~~~~~~~vli~apTGsGKT~~~l---~~l---~~~~~~l~l~P~r~La~q 116 (499)
+.+.++++.. |++..++.. .+.. .+.+-.+...|==.|||.... ..+ ..+.+++|.+|.+..++.
T Consensus 229 ~r~~~~lk~~----Fdi~~~s~~--~~~~---fkqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~ 299 (738)
T PHA03368 229 ERVERFLRTV----FNTPLFSDA--AVRH---FRQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEP 299 (738)
T ss_pred HHHHHHHHHH----cCCccccHH--HHHH---hhccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHH
Confidence 3444444433 455555433 3332 456778888899999999742 212 246688999999999999
Q ss_pred HHHHHHhc------CCceeEeeCCee--cccCC--CceEEEceeeccc--cCCccEEEEecCcccCCC
Q 010836 117 VAKRLNKA------NVSCDLITGQER--EEVDG--AKHRAVTVEMADV--VSDYDCAVIDEIQMLGCK 172 (499)
Q Consensus 117 ~~~~l~~~------g~~~~~~~g~~~--~~~~~--~~~iv~T~e~~~~--l~~~~~iViDEah~~~~~ 172 (499)
+++++... +..+..+.|+.. ....+ +.+.+.+..--+. -..++++|||||+.+.+.
T Consensus 300 vF~eI~~~le~~f~~~~v~~vkGe~I~i~f~nG~kstI~FaSarntNsiRGqtfDLLIVDEAqFIk~~ 367 (738)
T PHA03368 300 VFEEIGARLRQWFGASRVDHVKGETISFSFPDGSRSTIVFASSHNTNGIRGQDFNLLFVDEANFIRPD 367 (738)
T ss_pred HHHHHHHHHhhhcchhheeeecCcEEEEEecCCCccEEEEEeccCCCCccCCcccEEEEechhhCCHH
Confidence 99988752 112333345322 11112 2344443322222 257999999999999754
No 273
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.91 E-value=0.14 Score=47.54 Aligned_cols=71 Identities=25% Similarity=0.389 Sum_probs=43.7
Q ss_pred ceEEEEccCCccHHHHH--H-HHHH---cCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceee
Q 010836 78 KVILHVGPTNSGKTHQA--L-SRLE---SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~--l-~~l~---~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~ 151 (499)
..+++.||+|+|||... + ..+. .+.+++|+ +-.+........+.... +.+.
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~-~~~~f~~~~~~~~~~~~----------------------~~~~ 91 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYL-SAEEFIREFADALRDGE----------------------IEEF 91 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEE-EHHHHHHHHHHHHHTTS----------------------HHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceee-cHHHHHHHHHHHHHccc----------------------chhh
Confidence 35899999999999973 1 2222 23455555 44455555555554310 0123
Q ss_pred ccccCCccEEEEecCcccCC
Q 010836 152 ADVVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 152 ~~~l~~~~~iViDEah~~~~ 171 (499)
.+.+...++++||.+|.+..
T Consensus 92 ~~~~~~~DlL~iDDi~~l~~ 111 (219)
T PF00308_consen 92 KDRLRSADLLIIDDIQFLAG 111 (219)
T ss_dssp HHHHCTSSEEEEETGGGGTT
T ss_pred hhhhhcCCEEEEecchhhcC
Confidence 34456789999999999874
No 274
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=93.88 E-value=0.04 Score=57.62 Aligned_cols=17 Identities=35% Similarity=0.292 Sum_probs=15.7
Q ss_pred ceEEEEccCCccHHHHH
Q 010836 78 KVILHVGPTNSGKTHQA 94 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~ 94 (499)
+.++++||.|+|||+.|
T Consensus 44 ~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSA 60 (507)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 57999999999999997
No 275
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.87 E-value=0.036 Score=58.20 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=15.5
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
.+..+++||.|+|||+.|
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A 55 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTIS 55 (509)
T ss_pred CeeEEEECCCCCCHHHHH
Confidence 345799999999999987
No 276
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.82 E-value=0.21 Score=58.79 Aligned_cols=102 Identities=17% Similarity=0.119 Sum_probs=62.5
Q ss_pred CCCCchhc-cchHHHhcCCceEEEEccCCccHHHHH---HHHH---Hc--CCCEEEEccHHHHHHHHHHHHHhcCCceeE
Q 010836 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA---LSRL---ES--SSSGIYCGPLRLLAWEVAKRLNKANVSCDL 130 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~---l~~l---~~--~~~~l~l~P~r~La~q~~~~l~~~g~~~~~ 130 (499)
..|++-|. ++..+....++.++|.|..|+|||+.. +..+ .+ +..++.++||--.+..+. +.|+...-
T Consensus 834 ~~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~----e~Gi~A~T 909 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMR----SAGVDAQT 909 (1623)
T ss_pred cccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHH----HhCchHhh
Confidence 36899999 888885556799999999999999994 3322 22 235677899987776664 33554332
Q ss_pred eeCCeecccCCCceEEEceeeccccCCccEEEEecCcccCC
Q 010836 131 ITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 131 ~~g~~~~~~~~~~~iv~T~e~~~~l~~~~~iViDEah~~~~ 171 (499)
++....... .. -... -......+++||||+=++..
T Consensus 910 IasfL~~~~-~~----~~~~-~~~~~~~~llIVDEASMV~~ 944 (1623)
T PRK14712 910 LASFLHDTQ-LQ----QRSG-ETPDFSNTLFLLDESSMVGN 944 (1623)
T ss_pred HHHHhcccc-ch----hhcc-cCCCCCCcEEEEEccccccH
Confidence 222111000 00 0000 01123468999999999863
No 277
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=93.80 E-value=0.18 Score=54.95 Aligned_cols=83 Identities=22% Similarity=0.201 Sum_probs=66.0
Q ss_pred eEEEEcCCCCHHHHHHHHHHhcCCCCC--ccEEEecchhhccccc-cccEEEEcccccccCccccccChhhHHhhhccCC
Q 010836 265 LCSIVYGSLPPETRTRQATRFNDASSE--FDVLVASDAIGMGLNL-NISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAG 341 (499)
Q Consensus 265 ~v~~~hg~l~~~~R~~~~~~f~~~~g~--~~iLvaT~~~~~Gidi-pv~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRag 341 (499)
...-+.|+.....|....+.|+++.+. .-.||+|-+.+-|||+ -..+||++|. .+++.-=.|-+=|+-
T Consensus 1190 DyyriDGst~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDa---------sWNPSyDtQSIFRvy 1260 (1567)
T KOG1015|consen 1190 DYYRLDGSTTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDA---------SWNPSYDTQSIFRVY 1260 (1567)
T ss_pred ceEEecCcccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEec---------ccCCccchHHHHHHH
Confidence 466788999999999999999995433 4689999999999999 6999999988 446666678888888
Q ss_pred CCCCCCCcEEEEEEcC
Q 010836 342 RYGSKFPVGEVTCLDS 357 (499)
Q Consensus 342 R~g~~~~~g~~~~~~~ 357 (499)
|+|+. ..-++|.|..
T Consensus 1261 RfGQt-KPvyiYRfiA 1275 (1567)
T KOG1015|consen 1261 RFGQT-KPVYIYRFIA 1275 (1567)
T ss_pred hhcCc-Cceeehhhhh
Confidence 98885 3355665543
No 278
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=93.79 E-value=0.22 Score=59.38 Aligned_cols=101 Identities=18% Similarity=0.147 Sum_probs=61.5
Q ss_pred CCCCchhc-cchHHHhcCCceEEEEccCCccHHHHH--H-HHHH---c--CCCEEEEccHHHHHHHHHHHHHhcCCceeE
Q 010836 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA--L-SRLE---S--SSSGIYCGPLRLLAWEVAKRLNKANVSCDL 130 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~--l-~~l~---~--~~~~l~l~P~r~La~q~~~~l~~~g~~~~~ 130 (499)
..+++.|. ++..+....++.++|.|..|+|||+.. + ..+. . +..++.++||--.|..+. +.|+...-
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~----e~Gi~A~T 1041 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMR----SAGVDAQT 1041 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHH----hcCcchhh
Confidence 46899999 888886545689999999999999994 2 2221 2 235677899987776543 34654433
Q ss_pred eeCCeecccCCCceEEEceeeccccCCccEEEEecCcccC
Q 010836 131 ITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 131 ~~g~~~~~~~~~~~iv~T~e~~~~l~~~~~iViDEah~~~ 170 (499)
++........ -....+ .....-+++||||+=++.
T Consensus 1042 I~s~L~~~~~----~~~~~~--~~~~~~~llIVDEaSMv~ 1075 (1747)
T PRK13709 1042 LASFLHDTQL----QQRSGE--TPDFSNTLFLLDESSMVG 1075 (1747)
T ss_pred HHHHhccccc----cccccc--CCCCCCcEEEEEcccccc
Confidence 2221110000 000000 111245899999999986
No 279
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=93.72 E-value=0.11 Score=53.30 Aligned_cols=55 Identities=25% Similarity=0.320 Sum_probs=34.7
Q ss_pred CCccEEEEecCcccCCCCCChh---------HHHHHhc-cc----cccceEeecCCCchHHHHHHHHcCC
Q 010836 156 SDYDCAVIDEIQMLGCKTRGFS---------FTRALLG-IC----ANELHLCGDPAAVPLIQQILQVTGD 211 (499)
Q Consensus 156 ~~~~~iViDEah~~~~~~~g~~---------~~~~ll~-l~----~~~~~~~~~~~~~~~~~~l~~~~~~ 211 (499)
+.+-+||+||+|.+-- +||.. ....|+. +. -.++.++|++...+++.+-+-.+|.
T Consensus 323 SgLHIIIFDEiDAICK-qRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGR 391 (744)
T KOG0741|consen 323 SGLHIIIFDEIDAICK-QRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGR 391 (744)
T ss_pred CCceEEEehhhHHHHH-hcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCc
Confidence 5677999999998742 33332 2233332 11 2478889999888888766555554
No 280
>PRK11054 helD DNA helicase IV; Provisional
Probab=93.71 E-value=0.12 Score=56.41 Aligned_cols=60 Identities=20% Similarity=0.150 Sum_probs=45.7
Q ss_pred CCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHH---HHc-----CCCEEEEccHHHHHHHHHHHHHh
Q 010836 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR---LES-----SSSGIYCGPLRLLAWEVAKRLNK 123 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~---l~~-----~~~~l~l~P~r~La~q~~~~l~~ 123 (499)
..|++.|. ++-. ....++|.|..|||||.+.... +.. ..++++++.++..|.++.+++.+
T Consensus 195 ~~L~~~Q~~av~~----~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~ 263 (684)
T PRK11054 195 SPLNPSQARAVVN----GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRE 263 (684)
T ss_pred CCCCHHHHHHHhC----CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 56888887 5532 2456799999999999996433 332 23789999999999999999875
No 281
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.71 E-value=0.093 Score=51.26 Aligned_cols=39 Identities=38% Similarity=0.422 Sum_probs=28.4
Q ss_pred CCceEEEEccCCccHHHHH--H-HHHHc---CCCEEEEccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA--L-SRLES---SSSGIYCGPLRLLA 114 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~--l-~~l~~---~~~~l~l~P~r~La 114 (499)
.+++++++||||||||+.. + ..+.+ ..+++++--..|+.
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~ 175 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQ 175 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhc
Confidence 5789999999999999995 2 33322 45677777776763
No 282
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=93.65 E-value=0.26 Score=42.74 Aligned_cols=18 Identities=33% Similarity=0.379 Sum_probs=15.4
Q ss_pred ceEEEEccCCccHHHHHH
Q 010836 78 KVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l 95 (499)
..+++.|++|+|||+...
T Consensus 6 mki~ITG~PGvGKtTl~~ 23 (179)
T COG1618 6 MKIFITGRPGVGKTTLVL 23 (179)
T ss_pred eEEEEeCCCCccHHHHHH
Confidence 468999999999998764
No 283
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.62 E-value=0.043 Score=58.31 Aligned_cols=18 Identities=28% Similarity=0.407 Sum_probs=15.6
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
.+-++++||.|+|||+.+
T Consensus 38 pHA~LFtGP~GvGKTTLA 55 (700)
T PRK12323 38 HHAYLFTGTRGVGKTTLS 55 (700)
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 355799999999999996
No 284
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=93.61 E-value=0.2 Score=54.26 Aligned_cols=65 Identities=20% Similarity=0.207 Sum_probs=43.5
Q ss_pred CCccEEEecchhhccccc-c--ccEEEEcccccc---cCc-----------------------ccccc---ChhhHHhhh
Q 010836 290 SEFDVLVASDAIGMGLNL-N--ISRIIFSTMKKF---DGV-----------------------ELRDL---TVPEVKQIA 337 (499)
Q Consensus 290 g~~~iLvaT~~~~~Gidi-p--v~~VI~~~~~~~---~~~-----------------------~~~p~---s~~~~~Qr~ 337 (499)
|..-..||---.++|+|+ + -+.||..+.+.- |+. +..|. ......|-+
T Consensus 624 ga~~~aVcRGKVSEGlDFsD~~~RaVI~tGlPyP~~~D~~V~lK~~y~D~~~~~~g~~s~~lsg~eWY~~qA~RAvNQAi 703 (945)
T KOG1132|consen 624 GAVFFAVCRGKVSEGLDFSDDNGRAVIITGLPYPPVMDPRVKLKKQYLDENSSLKGAKSQLLSGQEWYSQQAYRAVNQAI 703 (945)
T ss_pred ceEEEEEecccccCCCCccccCCceeEEecCCCCCCCCHHHHHHHHhhhhhccccccccccccchHHHHhhHHHHHHHHH
Confidence 445677888899999999 4 778898887751 111 01122 234678999
Q ss_pred ccCCCCCCCCCcEEEEEEc
Q 010836 338 GRAGRYGSKFPVGEVTCLD 356 (499)
Q Consensus 338 GRagR~g~~~~~g~~~~~~ 356 (499)
||+-|...++ |.++.++
T Consensus 704 GRviRHR~D~--Gav~l~D 720 (945)
T KOG1132|consen 704 GRVIRHRNDY--GAVILCD 720 (945)
T ss_pred HHHHhhhccc--ceeeEee
Confidence 9999998864 5555443
No 285
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=93.60 E-value=0.088 Score=58.18 Aligned_cols=61 Identities=20% Similarity=0.065 Sum_probs=46.1
Q ss_pred CCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHH---HHHHcC-----CCEEEEccHHHHHHHHHHHHHhc
Q 010836 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL---SRLESS-----SSGIYCGPLRLLAWEVAKRLNKA 124 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l---~~l~~~-----~~~l~l~P~r~La~q~~~~l~~~ 124 (499)
..|++.|. ++.. ....++|.|..|||||.+.. ..|... .+++++..|+..|.++.+++.++
T Consensus 3 ~~Ln~~Q~~av~~----~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~ 72 (715)
T TIGR01075 3 DGLNDKQREAVAA----PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGAL 72 (715)
T ss_pred cccCHHHHHHHcC----CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHH
Confidence 45777787 5542 25678999999999999963 333332 36799999999999999999763
No 286
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.57 E-value=0.073 Score=52.33 Aligned_cols=39 Identities=23% Similarity=0.204 Sum_probs=26.1
Q ss_pred cCCceEEEEccCCccHHHHH--H-HHHH---cCCCEEEEccHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA--L-SRLE---SSSSGIYCGPLRLL 113 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~--l-~~l~---~~~~~l~l~P~r~L 113 (499)
..+++++++|+||||||+.. + ..+. .+.+.+.+-.+.||
T Consensus 142 ~~~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 142 DSRLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred HcCCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 35789999999999999984 2 2231 23455665555554
No 287
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=93.53 E-value=0.078 Score=51.67 Aligned_cols=59 Identities=25% Similarity=0.182 Sum_probs=39.4
Q ss_pred cCCCCCchhccchHHHhcCCceEEEEccCCccHHHHH--H-HHHHcCCCEEEEccHHHHHHH
Q 010836 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQA--L-SRLESSSSGIYCGPLRLLAWE 116 (499)
Q Consensus 58 ~~~~l~~~q~~~~~~~~~~~~~vli~apTGsGKT~~~--l-~~l~~~~~~l~l~P~r~La~q 116 (499)
.|..+++-+..+-......+.+++++|.||||||+.. + ..+....++|.+.-|.+|-.+
T Consensus 154 ~~gt~~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaELql~ 215 (355)
T COG4962 154 IFGTMIRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAELQLA 215 (355)
T ss_pred HcCCcCHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhhhccC
Confidence 4566777766222222234679999999999999984 2 333445688888888777433
No 288
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=93.51 E-value=0.22 Score=60.65 Aligned_cols=99 Identities=15% Similarity=0.035 Sum_probs=62.7
Q ss_pred CCCCchhc-cchHHHhcCCceEEEEccCCccHHHHH---HHHH---Hc--CCCEEEEccHHHHHHHHHHHHHhcCCceeE
Q 010836 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA---LSRL---ES--SSSGIYCGPLRLLAWEVAKRLNKANVSCDL 130 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~---l~~l---~~--~~~~l~l~P~r~La~q~~~~l~~~g~~~~~ 130 (499)
..+++.|. ++..+....++.++|.|+.|+|||+.. ...+ .+ +.+++.++||-..+.++. +.|+...-
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~----~~g~~a~T 1093 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELK----SAGVQAQT 1093 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHH----hcCCchHh
Confidence 57899999 888876556788999999999999986 1222 22 346788899977776654 34554322
Q ss_pred eeCCeecccCCCceEEEceeeccccCCccEEEEecCcccC
Q 010836 131 ITGQEREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 131 ~~g~~~~~~~~~~~iv~T~e~~~~l~~~~~iViDEah~~~ 170 (499)
+..-....... ..-......+++||||+=++.
T Consensus 1094 i~s~l~~~~~~--------~~~~~~~~~~v~ivDEasMv~ 1125 (1960)
T TIGR02760 1094 LDSFLTDISLY--------RNSGGDFRNTLFILDESSMVS 1125 (1960)
T ss_pred HHHHhcCcccc--------cccCCCCcccEEEEEcccccc
Confidence 21111000000 000113456899999999886
No 289
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.48 E-value=0.1 Score=55.57 Aligned_cols=18 Identities=39% Similarity=0.554 Sum_probs=15.5
Q ss_pred ceEEEEccCCccHHHHHH
Q 010836 78 KVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l 95 (499)
+-++++||.|+|||+.+.
T Consensus 36 ha~Lf~Gp~G~GKTt~A~ 53 (584)
T PRK14952 36 HAYLFSGPRGCGKTSSAR 53 (584)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 447899999999999974
No 290
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.45 E-value=0.15 Score=52.90 Aligned_cols=73 Identities=22% Similarity=0.294 Sum_probs=44.3
Q ss_pred ceEEEEccCCccHHHHH---HHHHHc---CCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceee
Q 010836 78 KVILHVGPTNSGKTHQA---LSRLES---SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~---l~~l~~---~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~ 151 (499)
..+++.|++|+|||..+ ...+.. +.+++| ++...+..++...+.... +. ..+.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~y-v~~~~f~~~~~~~l~~~~-------~~-------------~~~~ 200 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSY-MSGDEFARKAVDILQKTH-------KE-------------IEQF 200 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEE-EEHHHHHHHHHHHHHHhh-------hH-------------HHHH
Confidence 45899999999999874 222222 234555 444667666666554310 00 0012
Q ss_pred ccccCCccEEEEecCcccCC
Q 010836 152 ADVVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 152 ~~~l~~~~~iViDEah~~~~ 171 (499)
.......+++||||+|.+..
T Consensus 201 ~~~~~~~dvLiIDDiq~l~~ 220 (450)
T PRK14087 201 KNEICQNDVLIIDDVQFLSY 220 (450)
T ss_pred HHHhccCCEEEEeccccccC
Confidence 23346789999999998863
No 291
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=93.41 E-value=0.056 Score=58.05 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=16.4
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
.+.++++||.|+|||+.+.
T Consensus 38 ~Ha~Lf~GP~GvGKTTlAr 56 (709)
T PRK08691 38 HHAYLLTGTRGVGKTTIAR 56 (709)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 3568999999999999974
No 292
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.41 E-value=0.054 Score=54.60 Aligned_cols=19 Identities=32% Similarity=0.249 Sum_probs=15.9
Q ss_pred ceEEEEccCCccHHHHHHH
Q 010836 78 KVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l~ 96 (499)
+.++++||.|+|||+.+..
T Consensus 39 h~~L~~Gp~G~GKTtla~~ 57 (363)
T PRK14961 39 HAWLLSGTRGVGKTTIARL 57 (363)
T ss_pred eEEEEecCCCCCHHHHHHH
Confidence 4579999999999999743
No 293
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.35 E-value=0.039 Score=60.63 Aligned_cols=18 Identities=33% Similarity=0.381 Sum_probs=15.4
Q ss_pred ceEEEEccCCccHHHHHH
Q 010836 78 KVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l 95 (499)
+-++++||.|+|||+.+.
T Consensus 39 HAyLFtGPpGtGKTTLAR 56 (944)
T PRK14949 39 HAYLFTGTRGVGKTSLAR 56 (944)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 446899999999999973
No 294
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.33 E-value=0.15 Score=53.05 Aligned_cols=83 Identities=22% Similarity=0.264 Sum_probs=45.2
Q ss_pred CCceEEEEccCCccHHHHHHH---H-HHcC--CCEEEE--ccHHHHHHHHHHHHH-hcCCceeEeeCCeecccCCCceEE
Q 010836 76 VRKVILHVGPTNSGKTHQALS---R-LESS--SSGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRA 146 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~---~-l~~~--~~~l~l--~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv 146 (499)
.++.+.++||||+|||+.+.. . ...+ +++.++ =+.|..+.++..... .+|+.+........
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~---------- 418 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAES---------- 418 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHH----------
Confidence 478999999999999999622 1 2222 345444 244655544444332 23433322110000
Q ss_pred EceeeccccCCccEEEEecCccc
Q 010836 147 VTVEMADVVSDYDCAVIDEIQML 169 (499)
Q Consensus 147 ~T~e~~~~l~~~~~iViDEah~~ 169 (499)
-...+..+.++++|+||.+=..
T Consensus 419 -L~~aL~~l~~~DLVLIDTaG~s 440 (559)
T PRK12727 419 -LLDLLERLRDYKLVLIDTAGMG 440 (559)
T ss_pred -HHHHHHHhccCCEEEecCCCcc
Confidence 0022233467899999999664
No 295
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.31 E-value=0.13 Score=56.32 Aligned_cols=58 Identities=19% Similarity=0.087 Sum_probs=43.3
Q ss_pred CCchhc-cchHHHhcCCceEEEEccCCccHHHHHH---HHHHc-C----CCEEEEccHHHHHHHHHHHHHh
Q 010836 62 LTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL---SRLES-S----SSGIYCGPLRLLAWEVAKRLNK 123 (499)
Q Consensus 62 l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l---~~l~~-~----~~~l~l~P~r~La~q~~~~l~~ 123 (499)
+++.|. ++.. ....++|.|..|||||.+.. ..+.. . .+++++..|+..|.++.+++.+
T Consensus 3 Ln~~Q~~av~~----~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~ 69 (672)
T PRK10919 3 LNPGQQQAVEF----VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQ 69 (672)
T ss_pred CCHHHHHHHhC----CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHH
Confidence 566676 5442 25668899999999999963 33332 2 3679999999999999999975
No 296
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=93.31 E-value=0.094 Score=54.91 Aligned_cols=54 Identities=28% Similarity=0.287 Sum_probs=42.7
Q ss_pred ceEEEEccCCccHHHHH-HHHH-HcCCCEEEEccHHHHHHHHHHHHHhcCCceeEe
Q 010836 78 KVILHVGPTNSGKTHQA-LSRL-ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLI 131 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~-l~~l-~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~ 131 (499)
.++++.||||||||..+ +..+ ...+.+|+.=|--+|....+..+++.|.+|.++
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~~~~s~iV~D~KgEl~~~t~~~r~~~G~~V~vl 100 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLNYPGSMIVTDPKGELYEKTAGYRKKRGYKVYVL 100 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHhccCCEEEEECCCcHHHHHHHHHHHCCCEEEEe
Confidence 57999999999999985 3333 445678888999999999888888877666554
No 297
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.29 E-value=0.03 Score=60.04 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=14.8
Q ss_pred ceEEEEccCCccHHHHH
Q 010836 78 KVILHVGPTNSGKTHQA 94 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~ 94 (499)
+-++++||.|+|||+.+
T Consensus 39 hAyLf~Gp~GvGKTTlA 55 (647)
T PRK07994 39 HAYLFSGTRGVGKTTIA 55 (647)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34689999999999996
No 298
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=93.28 E-value=0.1 Score=57.75 Aligned_cols=61 Identities=18% Similarity=0.079 Sum_probs=46.1
Q ss_pred CCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHH---HHHHc-C----CCEEEEccHHHHHHHHHHHHHhc
Q 010836 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL---SRLES-S----SSGIYCGPLRLLAWEVAKRLNKA 124 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l---~~l~~-~----~~~l~l~P~r~La~q~~~~l~~~ 124 (499)
..|++.|. ++.. ....++|.|..|||||.+.. ..|.. . .+++++.-|+..|.++.+++.++
T Consensus 8 ~~Ln~~Q~~av~~----~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~ 77 (721)
T PRK11773 8 DSLNDKQREAVAA----PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQL 77 (721)
T ss_pred HhcCHHHHHHHhC----CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHH
Confidence 45778887 5542 25678999999999999963 33332 2 36799999999999999999763
No 299
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.21 E-value=0.057 Score=57.81 Aligned_cols=19 Identities=32% Similarity=0.412 Sum_probs=16.0
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
.+..+++||.|+|||+.+.
T Consensus 38 ~hayLf~Gp~G~GKtt~A~ 56 (576)
T PRK14965 38 AHAFLFTGARGVGKTSTAR 56 (576)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3557899999999999973
No 300
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=93.20 E-value=0.14 Score=49.82 Aligned_cols=67 Identities=24% Similarity=0.363 Sum_probs=42.7
Q ss_pred cCCCCCchhccchHHHhcCCceEEEEccCCccHHHHH----HHHHHcC--CCEEEEccHHHHHHHHHHHHHhcCCceeEe
Q 010836 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQA----LSRLESS--SSGIYCGPLRLLAWEVAKRLNKANVSCDLI 131 (499)
Q Consensus 58 ~~~~l~~~q~~~~~~~~~~~~~vli~apTGsGKT~~~----l~~l~~~--~~~l~l~P~r~La~q~~~~l~~~g~~~~~~ 131 (499)
.+.-.++-|..|+.+. .++..++..||-|+|||+.+ ..++..+ .++|..-|- -+.|.+.+++
T Consensus 125 ~I~~kt~~Q~~y~eai-~~~di~fGiGpAGTGKTyLava~av~al~~~~v~rIiLtRPa-----------VEAGEklGfL 192 (348)
T COG1702 125 SIIPKTPGQNMYPEAI-EEHDIVFGIGPAGTGKTYLAVAKAVDALGAGQVRRIILTRPA-----------VEAGEKLGFL 192 (348)
T ss_pred ceEecChhHHHHHHHH-HhcCeeeeecccccCChhhhHHhHhhhhhhcccceeeecCcc-----------hhcCcccCcC
Confidence 3666788898666653 45778889999999999986 3344333 233444551 1346666666
Q ss_pred eCCee
Q 010836 132 TGQER 136 (499)
Q Consensus 132 ~g~~~ 136 (499)
-|+.+
T Consensus 193 PGdl~ 197 (348)
T COG1702 193 PGDLR 197 (348)
T ss_pred CCchh
Confidence 66543
No 301
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=93.11 E-value=0.083 Score=53.76 Aligned_cols=54 Identities=17% Similarity=0.018 Sum_probs=41.6
Q ss_pred eEEEEccCCccHHHHH--HHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCceeEee
Q 010836 79 VILHVGPTNSGKTHQA--LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLIT 132 (499)
Q Consensus 79 ~vli~apTGsGKT~~~--l~~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~ 132 (499)
++++.||||||||..+ +..+...+.+|++=|--++....+...++.|-+|.++.
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~~~s~vv~D~Kge~~~~t~~~r~~~G~~V~v~n 56 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTWPGSVVVLDPKGENFELTSEHRRALGRKVFVFD 56 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcCCCCEEEEccchhHHHHHHHHHHHcCCeEEEEc
Confidence 4789999999999884 33333456788899999999888877777777766553
No 302
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=0.12 Score=54.83 Aligned_cols=87 Identities=29% Similarity=0.387 Sum_probs=54.4
Q ss_pred cCCceEEEEccCCccHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeeccc--CCCceEEEc--e-
Q 010836 75 KVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEV--DGAKHRAVT--V- 149 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l~~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~--~~~~~iv~T--~- 149 (499)
+++..++++||+|.||| +|+..+++.+.+.-+++++ |+.+... .+.+-.+++ |
T Consensus 348 ~kGpILcLVGPPGVGKT--------------------SLgkSIA~al~RkfvR~sL--GGvrDEAEIRGHRRTYIGamPG 405 (782)
T COG0466 348 LKGPILCLVGPPGVGKT--------------------SLGKSIAKALGRKFVRISL--GGVRDEAEIRGHRRTYIGAMPG 405 (782)
T ss_pred CCCcEEEEECCCCCCch--------------------hHHHHHHHHhCCCEEEEec--CccccHHHhccccccccccCCh
Confidence 35789999999999999 7888888888653344443 5544322 222222222 2
Q ss_pred eecccc----CCccEEEEecCcccCCCCCChhHHHHHhc
Q 010836 150 EMADVV----SDYDCAVIDEIQMLGCKTRGFSFTRALLG 184 (499)
Q Consensus 150 e~~~~l----~~~~~iViDEah~~~~~~~g~~~~~~ll~ 184 (499)
.+...+ ..--++++||+|.++.+.+|.-. .+|+.
T Consensus 406 rIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPa-SALLE 443 (782)
T COG0466 406 KIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPA-SALLE 443 (782)
T ss_pred HHHHHHHHhCCcCCeEEeechhhccCCCCCChH-HHHHh
Confidence 222222 33458999999999987777653 34443
No 303
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.10 E-value=0.15 Score=52.29 Aligned_cols=86 Identities=21% Similarity=0.179 Sum_probs=45.5
Q ss_pred CceEEEEccCCccHHHHHH---HHHHc-CCCEEEE--ccHHHHHHHHHHHHH-hcCCceeEeeCCeecccCCCceEEEce
Q 010836 77 RKVILHVGPTNSGKTHQAL---SRLES-SSSGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRAVTV 149 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l---~~l~~-~~~~l~l--~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv~T~ 149 (499)
...++++|++|+|||+.+. ..+.+ +.+++++ =+.|..+.++.+.+. ..++++...... . +. . -...
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~-~----d~-~-~i~~ 167 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDN-K----DA-V-EIAK 167 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCc-c----CH-H-HHHH
Confidence 5688999999999999962 23333 3455554 233454555444443 455553221100 0 00 0 0001
Q ss_pred eeccccCCccEEEEecCccc
Q 010836 150 EMADVVSDYDCAVIDEIQML 169 (499)
Q Consensus 150 e~~~~l~~~~~iViDEah~~ 169 (499)
+.+......++||||.+-+.
T Consensus 168 ~al~~~~~~DvVIIDTAGr~ 187 (437)
T PRK00771 168 EGLEKFKKADVIIVDTAGRH 187 (437)
T ss_pred HHHHHhhcCCEEEEECCCcc
Confidence 22223344699999999554
No 304
>PRK04328 hypothetical protein; Provisional
Probab=93.07 E-value=0.17 Score=48.14 Aligned_cols=51 Identities=22% Similarity=0.289 Sum_probs=35.9
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCc
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVS 127 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~r~La~q~~~~l~~~g~~ 127 (499)
.+..+++.||+|+|||..+++.+. ++.+++|+. +.+-..++.+.++.+|..
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis-~ee~~~~i~~~~~~~g~d 76 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA-LEEHPVQVRRNMRQFGWD 76 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE-eeCCHHHHHHHHHHcCCC
Confidence 388999999999999999776554 445677774 333445566666666543
No 305
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=93.06 E-value=0.12 Score=45.80 Aligned_cols=44 Identities=25% Similarity=0.285 Sum_probs=35.8
Q ss_pred EEEEccCCccHHHHHHHHHHc-CCCEEEEccHHHHHHHHHHHHHh
Q 010836 80 ILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNK 123 (499)
Q Consensus 80 vli~apTGsGKT~~~l~~l~~-~~~~l~l~P~r~La~q~~~~l~~ 123 (499)
++|.|++|||||..+.+.+.. +.+++|+.-.+.+-.++.+++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHH
Confidence 689999999999999887765 45889998777777777777654
No 306
>PRK05973 replicative DNA helicase; Provisional
Probab=93.05 E-value=0.14 Score=47.95 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=36.1
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCc
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVS 127 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~r~La~q~~~~l~~~g~~ 127 (499)
.+..++|.|++|+|||+.+++.+. ++.+++|+.-- +-..|+.+++..+|+.
T Consensus 63 ~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE-es~~~i~~R~~s~g~d 117 (237)
T PRK05973 63 PGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE-YTEQDVRDRLRALGAD 117 (237)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe-CCHHHHHHHHHHcCCC
Confidence 478999999999999999876553 34467777322 2246777777776644
No 307
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=93.05 E-value=0.39 Score=52.68 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=16.3
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
..++++.||+|+|||+.+-
T Consensus 52 ~~slLL~GPpGtGKTTLA~ 70 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLAR 70 (725)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3578999999999999863
No 308
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=92.95 E-value=0.23 Score=51.48 Aligned_cols=82 Identities=17% Similarity=0.100 Sum_probs=51.4
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEce--
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTV-- 149 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~-- 149 (499)
.+..+++.|++|+|||+.+++.+. .+++++|+... +-..|+..+...+|+....+ .++...
T Consensus 93 ~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E-Es~~qi~~ra~rlg~~~~~l------------~~~~e~~~ 159 (454)
T TIGR00416 93 PGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE-ESLQQIKMRAIRLGLPEPNL------------YVLSETNW 159 (454)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc-CCHHHHHHHHHHcCCChHHe------------EEcCCCCH
Confidence 478999999999999999876543 34678888653 34567777766665432100 000000
Q ss_pred -eeccc--cCCccEEEEecCcccC
Q 010836 150 -EMADV--VSDYDCAVIDEIQMLG 170 (499)
Q Consensus 150 -e~~~~--l~~~~~iViDEah~~~ 170 (499)
++... -.+.+++|||.++.+.
T Consensus 160 ~~I~~~i~~~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 160 EQICANIEEENPQACVIDSIQTLY 183 (454)
T ss_pred HHHHHHHHhcCCcEEEEecchhhc
Confidence 11111 1468999999999874
No 309
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=92.89 E-value=0.066 Score=51.58 Aligned_cols=37 Identities=30% Similarity=0.245 Sum_probs=24.9
Q ss_pred CCceEEEEccCCccHHHHH---HHHHHcC-CCEEEEccHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA---LSRLESS-SSGIYCGPLRL 112 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~---l~~l~~~-~~~l~l~P~r~ 112 (499)
.+.+++++||||||||+.. +..+... .+++++.-..|
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E 166 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPE 166 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEeccccc
Confidence 4899999999999999985 3333344 45555544433
No 310
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=92.88 E-value=0.15 Score=62.07 Aligned_cols=60 Identities=18% Similarity=0.114 Sum_probs=45.3
Q ss_pred CCCchhc-cchHHHhcCCceEEEEccCCccHHHHH--HHHHH-c-CCCEEEEccHHHHHHHHHHH
Q 010836 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA--LSRLE-S-SSSGIYCGPLRLLAWEVAKR 120 (499)
Q Consensus 61 ~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~--l~~l~-~-~~~~l~l~P~r~La~q~~~~ 120 (499)
.+++.|. ++..+....++..++.|+.|+|||+.. +..+. . +.+++.++||--.+..+.+.
T Consensus 429 ~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~ 493 (1960)
T TIGR02760 429 ALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQK 493 (1960)
T ss_pred CCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHH
Confidence 5788888 887776556799999999999999994 33333 2 45678889998877666554
No 311
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.88 E-value=0.068 Score=52.97 Aligned_cols=39 Identities=26% Similarity=0.255 Sum_probs=26.8
Q ss_pred cCCceEEEEccCCccHHHHH---HHHHHcCCCEEEEccHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA---LSRLESSSSGIYCGPLRLL 113 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~---l~~l~~~~~~l~l~P~r~L 113 (499)
..+++++++|+||||||+.. +..+....+++.+--+.||
T Consensus 158 ~~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El 199 (332)
T PRK13900 158 ISKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREI 199 (332)
T ss_pred HcCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCcc
Confidence 35899999999999999984 2333344566665444444
No 312
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=92.87 E-value=0.23 Score=53.89 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=39.6
Q ss_pred eEEEEccCCccHHHHHHHHHHc-CCCEEEEccHHHHHHHHHHHHHhc
Q 010836 79 VILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKA 124 (499)
Q Consensus 79 ~vli~apTGsGKT~~~l~~l~~-~~~~l~l~P~r~La~q~~~~l~~~ 124 (499)
..++.|-||||||+.+...+.+ +..+||++|...+|.|++..|+.+
T Consensus 31 ~~~l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~f 77 (655)
T TIGR00631 31 HQTLLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKEF 77 (655)
T ss_pred cEEEECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHh
Confidence 5569999999999998766654 457899999999999999999876
No 313
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.78 E-value=0.068 Score=56.54 Aligned_cols=17 Identities=35% Similarity=0.444 Sum_probs=15.1
Q ss_pred ceEEEEccCCccHHHHH
Q 010836 78 KVILHVGPTNSGKTHQA 94 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~ 94 (499)
+.++++||.|+|||+.+
T Consensus 39 ha~Lf~Gp~G~GKTt~A 55 (527)
T PRK14969 39 HAYLFTGTRGVGKTTLA 55 (527)
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45789999999999987
No 314
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=92.76 E-value=0.2 Score=46.93 Aligned_cols=50 Identities=20% Similarity=0.168 Sum_probs=34.1
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCC
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANV 126 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~r~La~q~~~~l~~~g~ 126 (499)
.+..+++.|++|+|||+.+.+.+. ++.+++|+. +-+-..+..+.+.++|.
T Consensus 23 ~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~-~e~~~~~~~~~~~~~g~ 76 (230)
T PRK08533 23 AGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVS-TQLTTTEFIKQMMSLGY 76 (230)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe-CCCCHHHHHHHHHHhCC
Confidence 478999999999999999755443 445778886 33333455555555554
No 315
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=92.74 E-value=0.16 Score=48.77 Aligned_cols=27 Identities=37% Similarity=0.473 Sum_probs=19.7
Q ss_pred cchHHHhcCCceEEEEccCCccHHHHH
Q 010836 68 WYPLARKKVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 68 ~~~~~~~~~~~~vli~apTGsGKT~~~ 94 (499)
.+..+....+..++++||||||||+..
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l 97 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTL 97 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHH
Confidence 333333344668999999999999985
No 316
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=92.74 E-value=1.9 Score=46.34 Aligned_cols=62 Identities=10% Similarity=0.016 Sum_probs=42.9
Q ss_pred CCchhccchHHHhcCCceEEEEccCCccHHHHH---HHHHH--cCCCEEEEccHHHHHHHHHHHHHh
Q 010836 62 LTRPHTWYPLARKKVRKVILHVGPTNSGKTHQA---LSRLE--SSSSGIYCGPLRLLAWEVAKRLNK 123 (499)
Q Consensus 62 l~~~q~~~~~~~~~~~~~vli~apTGsGKT~~~---l~~l~--~~~~~l~l~P~r~La~q~~~~l~~ 123 (499)
++-.++.-......+.+-.++.+|=|.|||.+. +.++. .+.+++|.+|...-+.++++++.+
T Consensus 172 ~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~ 238 (752)
T PHA03333 172 PRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVET 238 (752)
T ss_pred hhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHH
Confidence 333344222333356788899999999999994 22222 356789999999999998887663
No 317
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.73 E-value=0.11 Score=55.52 Aligned_cols=18 Identities=39% Similarity=0.610 Sum_probs=15.7
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
.+..+++||.|+|||..+
T Consensus 38 ~hayLf~Gp~GtGKTt~A 55 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAA 55 (559)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456788999999999986
No 318
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.65 E-value=0.14 Score=46.26 Aligned_cols=20 Identities=50% Similarity=0.519 Sum_probs=17.8
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..++++||||||||+..
T Consensus 23 ~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 23 EARKNILISGGTGSGKTTLL 42 (186)
T ss_pred hCCCEEEEECCCCCCHHHHH
Confidence 45899999999999999874
No 319
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=92.65 E-value=0.22 Score=54.35 Aligned_cols=53 Identities=23% Similarity=0.217 Sum_probs=30.7
Q ss_pred CceEEEEccCCccHHHHHH--H--H-HHcCC-CEEEE-c-cHHHHHHHHHHHHH-hcCCcee
Q 010836 77 RKVILHVGPTNSGKTHQAL--S--R-LESSS-SGIYC-G-PLRLLAWEVAKRLN-KANVSCD 129 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l--~--~-l~~~~-~~l~l-~-P~r~La~q~~~~l~-~~g~~~~ 129 (499)
++.+.++||||+|||+.+. . . ..+++ ++.++ . +.|.-+.++.+.+. .+|+++.
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~ 246 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYGRILGVPVH 246 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHHHhCCCCcc
Confidence 5788999999999999962 2 1 12332 44443 2 34544444444444 4566553
No 320
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=92.65 E-value=0.23 Score=51.39 Aligned_cols=71 Identities=17% Similarity=0.216 Sum_probs=41.5
Q ss_pred ceEEEEccCCccHHHHHH---HHHHc---CCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceee
Q 010836 78 KVILHVGPTNSGKTHQAL---SRLES---SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l---~~l~~---~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~ 151 (499)
..+++.||+|+|||..+- ..+.+ +.+++|+. ...+..++...+..- .. .+.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~-~~~f~~~~~~~~~~~---------~~-------------~~f 187 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT-SEKFLNDLVDSMKEG---------KL-------------NEF 187 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE-HHHHHHHHHHHHhcc---------cH-------------HHH
Confidence 468999999999999852 33333 23556654 344555554444321 00 001
Q ss_pred cccc-CCccEEEEecCcccCC
Q 010836 152 ADVV-SDYDCAVIDEIQMLGC 171 (499)
Q Consensus 152 ~~~l-~~~~~iViDEah~~~~ 171 (499)
.... ...++++|||+|.+.+
T Consensus 188 ~~~~~~~~dvLlIDDi~~l~~ 208 (440)
T PRK14088 188 REKYRKKVDVLLIDDVQFLIG 208 (440)
T ss_pred HHHHHhcCCEEEEechhhhcC
Confidence 1111 2578999999998864
No 321
>PRK10436 hypothetical protein; Provisional
Probab=92.59 E-value=0.15 Score=52.90 Aligned_cols=27 Identities=37% Similarity=0.469 Sum_probs=20.2
Q ss_pred cchHHHhcCCceEEEEccCCccHHHHH
Q 010836 68 WYPLARKKVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 68 ~~~~~~~~~~~~vli~apTGsGKT~~~ 94 (499)
.+..+....+..++++||||||||+..
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL 235 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTL 235 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHH
Confidence 343333346778999999999999974
No 322
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.58 E-value=0.2 Score=47.92 Aligned_cols=53 Identities=21% Similarity=0.144 Sum_probs=37.8
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc---CCCEEEEccHHHHHHHHHHHHHhcCCce
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLES---SSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~---~~~~l~l~P~r~La~q~~~~l~~~g~~~ 128 (499)
.++.+++.|++|||||..+++.+.+ .+..++.+-+.+...++.+.+.++|...
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~ 77 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDL 77 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCH
Confidence 3899999999999999998877754 3333444445566677777777665444
No 323
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=92.55 E-value=0.14 Score=49.72 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=19.9
Q ss_pred CceEEEEccCCccHHHHHHHHHHc
Q 010836 77 RKVILHVGPTNSGKTHQALSRLES 100 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~l~~ 100 (499)
++.++|.||||||||..++.....
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~ 27 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKG 27 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHh
Confidence 568999999999999888765554
No 324
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.55 E-value=0.05 Score=56.57 Aligned_cols=18 Identities=33% Similarity=0.545 Sum_probs=15.5
Q ss_pred ceEEEEccCCccHHHHHH
Q 010836 78 KVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l 95 (499)
+.++++||+|+|||+.|-
T Consensus 37 ~~~Lf~GPpGtGKTTlA~ 54 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVAR 54 (472)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 447999999999999973
No 325
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=92.50 E-value=0.26 Score=52.42 Aligned_cols=71 Identities=17% Similarity=0.194 Sum_probs=42.9
Q ss_pred ceEEEEccCCccHHHHHH---HHHHc---CCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceee
Q 010836 78 KVILHVGPTNSGKTHQAL---SRLES---SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l---~~l~~---~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~ 151 (499)
..++++|++|+|||..+- ..+.+ +.+++| ++..+++.+....+... .. .++
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Y-itaeef~~el~~al~~~---------~~-------------~~f 371 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRY-VSSEEFTNEFINSIRDG---------KG-------------DSF 371 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEE-eeHHHHHHHHHHHHHhc---------cH-------------HHH
Confidence 348999999999998842 23322 334444 45556666655544321 00 011
Q ss_pred ccccCCccEEEEecCcccCC
Q 010836 152 ADVVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 152 ~~~l~~~~~iViDEah~~~~ 171 (499)
...+.+++++|||++|.+..
T Consensus 372 ~~~y~~~DLLlIDDIq~l~g 391 (617)
T PRK14086 372 RRRYREMDILLVDDIQFLED 391 (617)
T ss_pred HHHhhcCCEEEEehhccccC
Confidence 12235689999999999864
No 326
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=92.41 E-value=0.19 Score=52.70 Aligned_cols=51 Identities=20% Similarity=0.203 Sum_probs=39.7
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc----CCCEEEEccHHHHHHHHHHHHHhcCCc
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLES----SSSGIYCGPLRLLAWEVAKRLNKANVS 127 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~----~~~~l~l~P~r~La~q~~~~l~~~g~~ 127 (499)
.+..+++.||+|+|||+.+++.+.. +.+++|+. .-+-..|+.++...+|+.
T Consensus 262 ~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s-~eEs~~~i~~~~~~lg~~ 316 (484)
T TIGR02655 262 KDSIILATGATGTGKTLLVSKFLENACANKERAILFA-YEESRAQLLRNAYSWGID 316 (484)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE-eeCCHHHHHHHHHHcCCC
Confidence 4899999999999999998776653 34778875 456667888888887754
No 327
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=92.40 E-value=0.19 Score=53.82 Aligned_cols=56 Identities=16% Similarity=-0.133 Sum_probs=45.8
Q ss_pred CCceEEEEccCCccHHHHH--HHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCceeEe
Q 010836 76 VRKVILHVGPTNSGKTHQA--LSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLI 131 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~--l~~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~ 131 (499)
..+++++.||||||||..+ +..+.-.+.+||+=|--++....+...++.|.+|-++
T Consensus 157 g~~hvLviapTgSGKg~g~VIPnLL~~~~S~VV~DpKGEl~~~Ta~~R~~~G~~V~vf 214 (606)
T PRK13897 157 GFQHALLFAPTGSGKGVGFVIPNLLFWEDSVVVHDIKLENYELTSGWREKQGQKVFVW 214 (606)
T ss_pred CCceEEEEcCCCCCcceEEehhhHHhCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEE
Confidence 3568999999999999975 3444446788999999999999998888888777665
No 328
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.38 E-value=0.33 Score=50.41 Aligned_cols=81 Identities=17% Similarity=0.160 Sum_probs=45.3
Q ss_pred CCceEEEEccCCccHHHHHHH----HHHcC-C-CEEEE--ccHHHHHHHHHHHHHh-cCCceeEeeCCeecccCCCceEE
Q 010836 76 VRKVILHVGPTNSGKTHQALS----RLESS-S-SGIYC--GPLRLLAWEVAKRLNK-ANVSCDLITGQEREEVDGAKHRA 146 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~----~l~~~-~-~~l~l--~P~r~La~q~~~~l~~-~g~~~~~~~g~~~~~~~~~~~iv 146 (499)
+++.+.++||||+|||+.+.. ...+. + ++.++ -+.|.-+.++.+.+.+ +|+++..........
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~-------- 326 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLR-------- 326 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHH--------
Confidence 367899999999999999622 11232 2 44333 4456666666666543 455443211110000
Q ss_pred EceeeccccCCccEEEEecCc
Q 010836 147 VTVEMADVVSDYDCAVIDEIQ 167 (499)
Q Consensus 147 ~T~e~~~~l~~~~~iViDEah 167 (499)
..+..+.+.++++||.+=
T Consensus 327 ---~aL~~L~d~d~VLIDTaG 344 (484)
T PRK06995 327 ---LALSELRNKHIVLIDTIG 344 (484)
T ss_pred ---HHHHhccCCCeEEeCCCC
Confidence 012234567899999964
No 329
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.33 E-value=0.78 Score=51.66 Aligned_cols=20 Identities=20% Similarity=0.330 Sum_probs=17.3
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
....++++.||+|+|||..+
T Consensus 197 ~~~~n~lL~G~pGvGKT~l~ 216 (857)
T PRK10865 197 RTKNNPVLIGEPGVGKTAIV 216 (857)
T ss_pred CCcCceEEECCCCCCHHHHH
Confidence 34568999999999999986
No 330
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=92.25 E-value=0.096 Score=56.06 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=16.4
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
.+.++++||.|+|||+.+.
T Consensus 46 ~ha~L~~Gp~GvGKTt~Ar 64 (598)
T PRK09111 46 AQAFMLTGVRGVGKTTTAR 64 (598)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4568999999999999973
No 331
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.19 E-value=0.045 Score=54.08 Aligned_cols=71 Identities=23% Similarity=0.265 Sum_probs=42.9
Q ss_pred CceEEEEccCCccHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceeecccc-
Q 010836 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVV- 155 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~~l- 155 (499)
-++++..||+|+|||..+-.... ..|+...+.||+...... ..-+..--+++||-
T Consensus 384 fRNilfyGPPGTGKTm~ArelAr-----------------------~SGlDYA~mTGGDVAPlG-~qaVTkiH~lFDWak 439 (630)
T KOG0742|consen 384 FRNILFYGPPGTGKTMFARELAR-----------------------HSGLDYAIMTGGDVAPLG-AQAVTKIHKLFDWAK 439 (630)
T ss_pred hhheeeeCCCCCCchHHHHHHHh-----------------------hcCCceehhcCCCccccc-hHHHHHHHHHHHHHh
Confidence 47899999999999977632211 346777777776554321 11111111455553
Q ss_pred --CCccEEEEecCcccCC
Q 010836 156 --SDYDCAVIDEIQMLGC 171 (499)
Q Consensus 156 --~~~~~iViDEah~~~~ 171 (499)
++-=++.|||||.++-
T Consensus 440 kS~rGLllFIDEADAFLc 457 (630)
T KOG0742|consen 440 KSRRGLLLFIDEADAFLC 457 (630)
T ss_pred hcccceEEEehhhHHHHH
Confidence 3344788999998753
No 332
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=92.14 E-value=0.14 Score=51.15 Aligned_cols=30 Identities=37% Similarity=0.451 Sum_probs=22.9
Q ss_pred cCCceEEEEccCCccHHHHH--HHHHHcCCCE
Q 010836 75 KVRKVILHVGPTNSGKTHQA--LSRLESSSSG 104 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~--l~~l~~~~~~ 104 (499)
+...++++.||||||||+.+ +..+++-+-+
T Consensus 224 LeKSNvLllGPtGsGKTllaqTLAr~ldVPfa 255 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTLLAQTLARVLDVPFA 255 (564)
T ss_pred eecccEEEECCCCCchhHHHHHHHHHhCCCeE
Confidence 45789999999999999986 5556554433
No 333
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.13 E-value=0.68 Score=48.82 Aligned_cols=76 Identities=12% Similarity=0.149 Sum_probs=58.3
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccccc-cccEEEEcc
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFST 316 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidi-pv~~VI~~~ 316 (499)
.+++++.. +...+.++++.|++.....+.++||+++..+|.++.....+ |+.+|+|+|..+-. ..+ +++.||..+
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~--g~~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKN--GEILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHc--CCCCEEECChHHHc-CcccCCCEEEEEC
Confidence 34556666 88899999999987655589999999999999988888888 88999999975432 334 377777554
Q ss_pred c
Q 010836 317 M 317 (499)
Q Consensus 317 ~ 317 (499)
.
T Consensus 102 e 102 (505)
T TIGR00595 102 E 102 (505)
T ss_pred C
Confidence 3
No 334
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.03 E-value=0.11 Score=56.08 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=16.2
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
.+.++++||.|+|||+.+.
T Consensus 38 ~~a~Lf~Gp~G~GKttlA~ 56 (620)
T PRK14948 38 APAYLFTGPRGTGKTSSAR 56 (620)
T ss_pred CceEEEECCCCCChHHHHH
Confidence 3567999999999999973
No 335
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.03 E-value=0.16 Score=48.48 Aligned_cols=20 Identities=45% Similarity=0.647 Sum_probs=17.3
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+.-++|.||||||||+..
T Consensus 123 ~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred CCCceEEEeCCCCCcHHHHH
Confidence 45778999999999999884
No 336
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.97 E-value=0.12 Score=53.98 Aligned_cols=19 Identities=32% Similarity=0.490 Sum_probs=15.5
Q ss_pred cccCCccEEEEecCcccCC
Q 010836 153 DVVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 153 ~~l~~~~~iViDEah~~~~ 171 (499)
++..+..++||||+|.+..
T Consensus 115 P~~~~~KVvIIDEad~Lt~ 133 (486)
T PRK14953 115 PIKGKYKVYIIDEAHMLTK 133 (486)
T ss_pred cccCCeeEEEEEChhhcCH
Confidence 4457789999999999863
No 337
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=91.97 E-value=0.14 Score=55.45 Aligned_cols=18 Identities=39% Similarity=0.586 Sum_probs=15.6
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
.+.++++||.|+|||.+|
T Consensus 40 ~HAYLF~GP~GtGKTt~A 57 (725)
T PRK07133 40 SHAYLFSGPRGTGKTSVA 57 (725)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 355789999999999997
No 338
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.93 E-value=0.27 Score=52.42 Aligned_cols=44 Identities=32% Similarity=0.462 Sum_probs=31.9
Q ss_pred CCceEEEEccCCccHHHHH--HHHHHcCCCE-EEE--ccHHHHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA--LSRLESSSSG-IYC--GPLRLLAWEVAK 119 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~--l~~l~~~~~~-l~l--~P~r~La~q~~~ 119 (499)
.|+.+.++||.|||||+++ ++.+.+-..+ |.+ +|.+.+-....+
T Consensus 493 pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr 541 (716)
T KOG0058|consen 493 PGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLR 541 (716)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHH
Confidence 5899999999999999997 5555543333 333 888877665554
No 339
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.93 E-value=0.097 Score=55.24 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=15.4
Q ss_pred ceEEEEccCCccHHHHHH
Q 010836 78 KVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l 95 (499)
+.++++||.|+|||+.+.
T Consensus 39 ha~Lf~Gp~GvGKTTlAr 56 (546)
T PRK14957 39 HAYLFTGTRGVGKTTLGR 56 (546)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457899999999999973
No 340
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=91.87 E-value=0.12 Score=42.77 Aligned_cols=16 Identities=50% Similarity=0.744 Sum_probs=14.1
Q ss_pred eEEEEccCCccHHHHH
Q 010836 79 VILHVGPTNSGKTHQA 94 (499)
Q Consensus 79 ~vli~apTGsGKT~~~ 94 (499)
.++|.|++|||||+.+
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 3789999999999876
No 341
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.86 E-value=0.1 Score=55.81 Aligned_cols=18 Identities=28% Similarity=0.357 Sum_probs=15.4
Q ss_pred ceEEEEccCCccHHHHHH
Q 010836 78 KVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l 95 (499)
+-++++||.|+|||+.+.
T Consensus 39 ha~Lf~Gp~GvGKTtlAr 56 (618)
T PRK14951 39 HAYLFTGTRGVGKTTVSR 56 (618)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 456999999999999973
No 342
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.82 E-value=0.11 Score=54.64 Aligned_cols=17 Identities=41% Similarity=0.602 Sum_probs=15.1
Q ss_pred ceEEEEccCCccHHHHH
Q 010836 78 KVILHVGPTNSGKTHQA 94 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~ 94 (499)
+.++++||.|+|||+.+
T Consensus 37 ha~Lf~GppGtGKTTlA 53 (504)
T PRK14963 37 HAYLFSGPRGVGKTTTA 53 (504)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45699999999999997
No 343
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=91.68 E-value=0.21 Score=44.43 Aligned_cols=44 Identities=27% Similarity=0.285 Sum_probs=32.3
Q ss_pred eEEEEccCCccHHHHHHHHHHcC-CCEEEEccHHHHHHHHHHHHH
Q 010836 79 VILHVGPTNSGKTHQALSRLESS-SSGIYCGPLRLLAWEVAKRLN 122 (499)
Q Consensus 79 ~vli~apTGsGKT~~~l~~l~~~-~~~l~l~P~r~La~q~~~~l~ 122 (499)
.+++.|++|||||..+....... ...+|++.....-.++.+++.
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~ 47 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIA 47 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHH
Confidence 58999999999999997776653 467787655555556666654
No 344
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=91.65 E-value=0.31 Score=51.16 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=39.1
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc-----CCCEEEEccHHHHHHHHHHHHHhcCCce
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLES-----SSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~-----~~~~l~l~P~r~La~q~~~~l~~~g~~~ 128 (499)
.++.+++.||+|||||+.+++.+.+ +.+++|+.- -+-..++.+.++.+|...
T Consensus 20 ~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~-eE~~~~l~~~~~~~G~~~ 76 (484)
T TIGR02655 20 IGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF-EESPQDIIKNARSFGWDL 76 (484)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE-ecCHHHHHHHHHHcCCCH
Confidence 4899999999999999999887643 357888853 355667777777776543
No 345
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=91.60 E-value=0.23 Score=44.52 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=18.5
Q ss_pred CceEEEEccCCccHHHHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALSRLE 99 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~l~ 99 (499)
++..+++||.+||||...++.+.
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~ 26 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRAR 26 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHH
Confidence 56789999999999987665553
No 346
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=91.52 E-value=0.2 Score=47.99 Aligned_cols=37 Identities=27% Similarity=0.355 Sum_probs=25.6
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcC-------CCEEEEccHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLESS-------SSGIYCGPLRLL 113 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~~-------~~~l~l~P~r~L 113 (499)
+.-..+|.|||||||+-. +..|+.. ..+++++|.+..
T Consensus 86 qP~I~~VYGPTG~GKSqL-lRNLis~~lI~P~PETVfFItP~~~m 129 (369)
T PF02456_consen 86 QPFIGVVYGPTGSGKSQL-LRNLISCQLIQPPPETVFFITPQKDM 129 (369)
T ss_pred CceEEEEECCCCCCHHHH-HHHhhhcCcccCCCCceEEECCCCCC
Confidence 455678999999999954 3333332 367888887654
No 347
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.52 E-value=0.14 Score=55.04 Aligned_cols=19 Identities=37% Similarity=0.510 Sum_probs=16.1
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
.+.++++||.|+|||+.+.
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~ 56 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTAR 56 (585)
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 3557999999999999973
No 348
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.49 E-value=0.18 Score=51.54 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.7
Q ss_pred ceEEEEccCCccHHHHHH
Q 010836 78 KVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l 95 (499)
+.++++||.|+|||+.|.
T Consensus 39 ha~lf~Gp~G~GKtt~A~ 56 (397)
T PRK14955 39 HGYIFSGLRGVGKTTAAR 56 (397)
T ss_pred eeEEEECCCCCCHHHHHH
Confidence 458899999999999974
No 349
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=91.48 E-value=0.43 Score=48.48 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=16.5
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
.+.+++.||.|+|||..+.
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~ 54 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAAR 54 (394)
T ss_pred CeEEEEECCCCCcHHHHHH
Confidence 4678999999999998874
No 350
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=91.47 E-value=0.045 Score=48.71 Aligned_cols=90 Identities=12% Similarity=0.028 Sum_probs=37.8
Q ss_pred EEEccCCccHHHHHH---HHHHcC--CCEEEEccHHHHHHHHHHHHHh----cCCceeEe--eCC-eecccCCCceEEEc
Q 010836 81 LHVGPTNSGKTHQAL---SRLESS--SSGIYCGPLRLLAWEVAKRLNK----ANVSCDLI--TGQ-EREEVDGAKHRAVT 148 (499)
Q Consensus 81 li~apTGsGKT~~~l---~~l~~~--~~~l~l~P~r~La~q~~~~l~~----~g~~~~~~--~g~-~~~~~~~~~~iv~T 148 (499)
++.|+-|-|||.+.= ..+... .++++.+|+.+-++.+++.+.. ++.+.... .+. .........+-+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~f~~ 80 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKGLKALGYKEEKKKRIGQIIKLRFNKQRIEFVA 80 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC--------------------------CCC--B--
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhhccccccccccccccccccccccccceEEEEC
Confidence 578999999998852 222222 3688889999988888766542 22222000 000 00001133444555
Q ss_pred eeecc-ccCCccEEEEecCcccC
Q 010836 149 VEMAD-VVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 149 ~e~~~-~l~~~~~iViDEah~~~ 170 (499)
|+.+. .....|++|||||=.+.
T Consensus 81 Pd~l~~~~~~~DlliVDEAAaIp 103 (177)
T PF05127_consen 81 PDELLAEKPQADLLIVDEAAAIP 103 (177)
T ss_dssp HHHHCCT----SCEEECTGGGS-
T ss_pred CHHHHhCcCCCCEEEEechhcCC
Confidence 53332 23457999999998875
No 351
>PF12846 AAA_10: AAA-like domain
Probab=91.47 E-value=0.25 Score=48.03 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=26.2
Q ss_pred CceEEEEccCCccHHHHHHH----HHHcCCCEEEEccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALS----RLESSSSGIYCGPLRLLAW 115 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~----~l~~~~~~l~l~P~r~La~ 115 (499)
+.++++.|+||||||+.+.. .+..+..++++=|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCchHHH
Confidence 46899999999999988632 2234456666655544433
No 352
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=91.42 E-value=0.053 Score=56.32 Aligned_cols=19 Identities=32% Similarity=0.496 Sum_probs=16.0
Q ss_pred cccCCccEEEEecCcccCC
Q 010836 153 DVVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 153 ~~l~~~~~iViDEah~~~~ 171 (499)
+.-.++++.||||+|+++-
T Consensus 115 P~~~ryKVyiIDEvHMLS~ 133 (515)
T COG2812 115 PSEGRYKVYIIDEVHMLSK 133 (515)
T ss_pred CccccceEEEEecHHhhhH
Confidence 3458899999999999973
No 353
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=91.42 E-value=0.21 Score=45.43 Aligned_cols=30 Identities=37% Similarity=0.536 Sum_probs=19.6
Q ss_pred ceEEEEccCCccHHHHHHHHHHcCCCEEEE
Q 010836 78 KVILHVGPTNSGKTHQALSRLESSSSGIYC 107 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l~~l~~~~~~l~l 107 (499)
+..++.||||+|||..++..-.+.+-.++.
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~ 31 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVIS 31 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEE
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEE
Confidence 357899999999998877655554444443
No 354
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=91.35 E-value=0.21 Score=49.24 Aligned_cols=20 Identities=40% Similarity=0.561 Sum_probs=17.5
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+++++++|+||||||+..
T Consensus 146 ~~~~~ilI~G~tGSGKTTll 165 (319)
T PRK13894 146 RAHRNILVIGGTGSGKTTLV 165 (319)
T ss_pred HcCCeEEEECCCCCCHHHHH
Confidence 35899999999999999774
No 355
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=91.34 E-value=0.18 Score=53.03 Aligned_cols=18 Identities=39% Similarity=0.410 Sum_probs=15.3
Q ss_pred ceEEEEccCCccHHHHHH
Q 010836 78 KVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l 95 (499)
+..+++||.|+|||..+.
T Consensus 37 hayLf~Gp~G~GKTt~Ar 54 (535)
T PRK08451 37 HAYLFSGLRGSGKTSSAR 54 (535)
T ss_pred eeEEEECCCCCcHHHHHH
Confidence 456899999999999973
No 356
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=91.30 E-value=0.35 Score=52.85 Aligned_cols=118 Identities=16% Similarity=0.125 Sum_probs=70.5
Q ss_pred CCceEEEEccCCccHHHHHH---HHHHc-----CCCEEEEccHHHHHHHHHHHHHhc--------CCceeEeeCCee---
Q 010836 76 VRKVILHVGPTNSGKTHQAL---SRLES-----SSSGIYCGPLRLLAWEVAKRLNKA--------NVSCDLITGQER--- 136 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l---~~l~~-----~~~~l~l~P~r~La~q~~~~l~~~--------g~~~~~~~g~~~--- 136 (499)
.|.-+|+.--.|-|||++.+ ..++. -+++||++|.-.+.++ ...|.++ .+.|..+....+
T Consensus 695 ~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV~PlNt~~NW-~~EFekWm~~~e~~~~leV~eL~~vkr~e~ 773 (1567)
T KOG1015|consen 695 PGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVVCPLNTALNW-MNEFEKWMEGLEDDEKLEVSELATVKRPEE 773 (1567)
T ss_pred CCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEEcchHHHHHH-HHHHHHhcccccccccceeehhhhccChHH
Confidence 35667777778999999953 33332 2578999999766554 4555542 122322221111
Q ss_pred ------cccCCCceEEEceeecccc---------------------CCccEEEEecCcccCCCCCChhHHHHHhccc-cc
Q 010836 137 ------EEVDGAKHRAVTVEMADVV---------------------SDYDCAVIDEIQMLGCKTRGFSFTRALLGIC-AN 188 (499)
Q Consensus 137 ------~~~~~~~~iv~T~e~~~~l---------------------~~~~~iViDEah~~~~~~~g~~~~~~ll~l~-~~ 188 (499)
.+.....+.+++++++..| ...|+||.||+|.+-+. -.+.+.++..+. .+
T Consensus 774 R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNe--ksa~Skam~~irtkR 851 (1567)
T KOG1015|consen 774 RSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNE--KSAVSKAMNSIRTKR 851 (1567)
T ss_pred HHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccc--hHHHHHHHHHHHhhe
Confidence 1122457778888665322 56899999999999765 445566665543 34
Q ss_pred cceEeecC
Q 010836 189 ELHLCGDP 196 (499)
Q Consensus 189 ~~~~~~~~ 196 (499)
.|.+.|.+
T Consensus 852 RI~LTGTP 859 (1567)
T KOG1015|consen 852 RIILTGTP 859 (1567)
T ss_pred eEEeecCc
Confidence 44444443
No 357
>PRK05580 primosome assembly protein PriA; Validated
Probab=91.28 E-value=0.89 Score=49.84 Aligned_cols=75 Identities=13% Similarity=0.142 Sum_probs=58.5
Q ss_pred CCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccccc-cccEEEEccc
Q 010836 240 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL-NISRIIFSTM 317 (499)
Q Consensus 240 ~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidi-pv~~VI~~~~ 317 (499)
+++++.+ ++..+.++.+.+++.....+..+||+++..+|.+......+ |+.+|+|+|...-. +.+ ++..||..+.
T Consensus 191 ~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~--g~~~IVVgTrsal~-~p~~~l~liVvDEe 267 (679)
T PRK05580 191 KQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKR--GEAKVVIGARSALF-LPFKNLGLIIVDEE 267 (679)
T ss_pred CeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHc--CCCCEEEeccHHhc-ccccCCCEEEEECC
Confidence 4566666 89999999999987655589999999999999988888888 88999999974322 344 3777776554
No 358
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.27 E-value=0.13 Score=54.81 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=15.9
Q ss_pred ceEEEEccCCccHHHHHH
Q 010836 78 KVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l 95 (499)
+.++++||.|+|||+++.
T Consensus 39 ha~Lf~GPpG~GKTtiAr 56 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIAR 56 (624)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 568899999999999973
No 359
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=91.18 E-value=0.98 Score=49.06 Aligned_cols=101 Identities=16% Similarity=0.115 Sum_probs=64.4
Q ss_pred cchHHHhcCCceEEEEccCCccHHHHH---HHHHHc-C--CCEEEEccHHHHHHHHHHHHH----hcCCceeEee---CC
Q 010836 68 WYPLARKKVRKVILHVGPTNSGKTHQA---LSRLES-S--SSGIYCGPLRLLAWEVAKRLN----KANVSCDLIT---GQ 134 (499)
Q Consensus 68 ~~~~~~~~~~~~vli~apTGsGKT~~~---l~~l~~-~--~~~l~l~P~r~La~q~~~~l~----~~g~~~~~~~---g~ 134 (499)
.+..+.....+.+++.|.=|=|||.++ +..+.. . .+++|.+|+.+-++.+.+.+. .+|.+-.+.. |.
T Consensus 222 ~~~~l~~~~~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~~l~~lg~~~~v~~d~~g~ 301 (758)
T COG1444 222 ILERLLDAPKRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGKGLEFLGYKRKVAPDALGE 301 (758)
T ss_pred HHHHHHcCCCceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHHhHHHhCCccccccccccc
Confidence 444454455668999999999999984 333322 2 377888999998888776554 3454432221 22
Q ss_pred eeccc-CCCceEEEceeeccccCCccEEEEecCcccC
Q 010836 135 EREEV-DGAKHRAVTVEMADVVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 135 ~~~~~-~~~~~iv~T~e~~~~l~~~~~iViDEah~~~ 170 (499)
..... +...+-+..|.... .. -+++|||||=.+.
T Consensus 302 ~~~~~~~~~~i~y~~P~~a~-~~-~DllvVDEAAaIp 336 (758)
T COG1444 302 IREVSGDGFRIEYVPPDDAQ-EE-ADLLVVDEAAAIP 336 (758)
T ss_pred eeeecCCceeEEeeCcchhc-cc-CCEEEEehhhcCC
Confidence 22221 22334577776666 33 8999999998775
No 360
>PLN02165 adenylate isopentenyltransferase
Probab=91.18 E-value=0.25 Score=48.56 Aligned_cols=22 Identities=32% Similarity=0.483 Sum_probs=18.7
Q ss_pred cCCceEEEEccCCccHHHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l~ 96 (499)
..++.++|.||||||||..+..
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~ 62 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVD 62 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHH
Confidence 5678999999999999977654
No 361
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.15 E-value=0.34 Score=45.54 Aligned_cols=52 Identities=12% Similarity=0.085 Sum_probs=35.5
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCce
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~r~La~q~~~~l~~~g~~~ 128 (499)
.+..+++.|++|+|||+.+.+.+. ++.+++|+.= .+-..++.+++.++|..+
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~-e~~~~~~~~~~~~~g~~~ 79 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT-ENTSKSYLKQMESVKIDI 79 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc-CCCHHHHHHHHHHCCCCh
Confidence 378999999999999999866543 3456777732 233355666666666543
No 362
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=91.14 E-value=0.37 Score=44.94 Aligned_cols=51 Identities=18% Similarity=0.187 Sum_probs=36.2
Q ss_pred CCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHhcCCc
Q 010836 76 VRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNKANVS 127 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l----~~~~~~l~l~P~r~La~q~~~~l~~~g~~ 127 (499)
.+..+++.|++|+|||..+++.+ .++.+++|+.- .+-..++.+++..+|..
T Consensus 15 ~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~-e~~~~~l~~~~~~~~~~ 69 (224)
T TIGR03880 15 EGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISL-EEREERILGYAKSKGWD 69 (224)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC-CCCHHHHHHHHHHcCCC
Confidence 37889999999999999876655 34456777733 23456777777776543
No 363
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=91.13 E-value=0.28 Score=54.32 Aligned_cols=61 Identities=18% Similarity=0.088 Sum_probs=45.4
Q ss_pred CCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHH---HHHc-C----CCEEEEccHHHHHHHHHHHHHhc
Q 010836 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALS---RLES-S----SSGIYCGPLRLLAWEVAKRLNKA 124 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~---~l~~-~----~~~l~l~P~r~La~q~~~~l~~~ 124 (499)
..|++.|. ++.. ....++|.|..|||||.+... .+.. . .+++++.-|+..|.++.+++.++
T Consensus 3 ~~Ln~~Q~~av~~----~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~ 72 (726)
T TIGR01073 3 AHLNPEQREAVKT----TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKL 72 (726)
T ss_pred cccCHHHHHHHhC----CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHH
Confidence 45777777 5542 256799999999999999643 3333 2 36788999999999999998753
No 364
>COG4128 Zot Zonula occludens toxin [General function prediction only]
Probab=91.10 E-value=0.61 Score=44.30 Aligned_cols=89 Identities=21% Similarity=0.071 Sum_probs=44.0
Q ss_pred eEEEEccCCccHHHHHHH----HHHcCCCEEEEccHHHHH-HHHHHHHHhcCCceeEeeCCeecccCCCceEEEceeecc
Q 010836 79 VILHVGPTNSGKTHQALS----RLESSSSGIYCGPLRLLA-WEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMAD 153 (499)
Q Consensus 79 ~vli~apTGsGKT~~~l~----~l~~~~~~l~l~P~r~La-~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~ 153 (499)
..+..|+.||+||..|++ +..+.|+.|+. .-|-|- +-+++++...--.+.++.-+ ..+....-.--....
T Consensus 3 I~ihhG~pGSyKTsgAv~~~~iPA~ksGR~IIT-NVrGl~ler~~~~~pd~~~~i~I~n~D----~~~~d~~~~m~~~~~ 77 (398)
T COG4128 3 ISIHHGIPGSYKTSGAVCNVIIPAFKSGRRIIT-NVRGLQLERITERYPDATGEIIIVNDD----VLKADFFPFMGGEGS 77 (398)
T ss_pred eEEEecCCCCcccchhHHhhhhhhhcCCcEEEE-ecccccHHHHHHhccCCCCceEEEecc----ccCcccchhhcceee
Confidence 357899999999999853 33456666654 222222 22333333221111111000 001111111112223
Q ss_pred ccCCccEEEEecCcccCCC
Q 010836 154 VVSDYDCAVIDEIQMLGCK 172 (499)
Q Consensus 154 ~l~~~~~iViDEah~~~~~ 172 (499)
|-..-.++||||+.++...
T Consensus 78 wa~~gafl~iDE~~rifpk 96 (398)
T COG4128 78 WAQFGAFLVIDEAWRIFPK 96 (398)
T ss_pred ccccCcEEEEechhhccCc
Confidence 4466789999999998743
No 365
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=91.09 E-value=0.41 Score=56.14 Aligned_cols=58 Identities=17% Similarity=0.095 Sum_probs=44.6
Q ss_pred CCchhc-cchHHHhcCCceEEEEccCCccHHHHHHH----HHHcC---CCEEEEccHHHHHHHHHHHHHh
Q 010836 62 LTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALS----RLESS---SSGIYCGPLRLLAWEVAKRLNK 123 (499)
Q Consensus 62 l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~----~l~~~---~~~l~l~P~r~La~q~~~~l~~ 123 (499)
+|+.|. ++. ..+++++|.|..|||||.+... .+..+ .+.++++=|+..|.++.+++.+
T Consensus 2 ~t~~Q~~ai~----~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~ 67 (1232)
T TIGR02785 2 WTDEQWQAIY----TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEE 67 (1232)
T ss_pred CCHHHHHHHh----CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHH
Confidence 466677 554 3488999999999999999643 33332 3579999999999999888874
No 366
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=91.07 E-value=0.27 Score=53.35 Aligned_cols=57 Identities=18% Similarity=0.008 Sum_probs=44.5
Q ss_pred cCCceEEEEccCCccHHHHH-HHHHH-cCCCEEEEccHHHHHHHHHHHHHhcCCceeEe
Q 010836 75 KVRKVILHVGPTNSGKTHQA-LSRLE-SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLI 131 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~-l~~l~-~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~ 131 (499)
...+++++.||||||||..+ +..|+ ..+++||+=|--++........++.|-.|-++
T Consensus 137 ~~~~hvlviApTgSGKgvg~VIPnLL~~~gS~VV~DpKGE~~~~Ta~~R~~~G~~V~~F 195 (670)
T PRK13850 137 GEQPHSLVVAPTRAGKGVGVVIPTLLTFKGSVIALDVKGELFELTSRARKASGDAVFKF 195 (670)
T ss_pred CCCceEEEEecCCCCceeeehHhHHhcCCCCEEEEeCCchHHHHHHHHHHhCCCEEEEe
Confidence 34568999999999999985 33343 45788999999999988888777777766544
No 367
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=90.96 E-value=0.31 Score=53.44 Aligned_cols=58 Identities=21% Similarity=0.075 Sum_probs=42.3
Q ss_pred CCchhc-cchHHHhcCCceEEEEccCCccHHHHHHH---HHHc-C----CCEEEEccHHHHHHHHHHHHHh
Q 010836 62 LTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALS---RLES-S----SSGIYCGPLRLLAWEVAKRLNK 123 (499)
Q Consensus 62 l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~---~l~~-~----~~~l~l~P~r~La~q~~~~l~~ 123 (499)
|++-|. ++. .....++|.|..|||||.+... .+.. . .+++++..|+..|.++.+++.+
T Consensus 2 Ln~~Q~~av~----~~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~ 68 (664)
T TIGR01074 2 LNPQQQEAVE----YVTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAK 68 (664)
T ss_pred CCHHHHHHHh----CCCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 456665 443 2356799999999999999643 3332 2 3568889999999999999874
No 368
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=90.88 E-value=0.17 Score=53.70 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=16.3
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
.+.++++||.|+|||+.|.
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~ 56 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAK 56 (605)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 3568999999999999973
No 369
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=90.86 E-value=0.18 Score=49.58 Aligned_cols=19 Identities=47% Similarity=0.468 Sum_probs=17.4
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+.+++++||||||||+..
T Consensus 143 ~~~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 143 SRKNIIISGGTGSGKTTFL 161 (308)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5899999999999999975
No 370
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=90.75 E-value=0.28 Score=52.42 Aligned_cols=27 Identities=37% Similarity=0.458 Sum_probs=19.6
Q ss_pred cchHHHhcCCceEEEEccCCccHHHHH
Q 010836 68 WYPLARKKVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 68 ~~~~~~~~~~~~vli~apTGsGKT~~~ 94 (499)
.+..+....+..++++||||||||+..
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl 333 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSL 333 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 333333345678999999999999884
No 371
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=90.70 E-value=0.94 Score=40.84 Aligned_cols=18 Identities=33% Similarity=0.473 Sum_probs=15.8
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
.+.+++.||+|+|||..+
T Consensus 14 ~~~~L~~G~~G~gkt~~a 31 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLA 31 (188)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356899999999999886
No 372
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=90.62 E-value=0.18 Score=42.05 Aligned_cols=15 Identities=47% Similarity=0.348 Sum_probs=13.7
Q ss_pred EEEEccCCccHHHHH
Q 010836 80 ILHVGPTNSGKTHQA 94 (499)
Q Consensus 80 vli~apTGsGKT~~~ 94 (499)
++|.|++|||||+++
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 579999999999986
No 373
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=90.61 E-value=0.48 Score=44.24 Aligned_cols=51 Identities=14% Similarity=0.109 Sum_probs=33.8
Q ss_pred CCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHhcCCc
Q 010836 76 VRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNKANVS 127 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l----~~~~~~l~l~P~r~La~q~~~~l~~~g~~ 127 (499)
.+..+++.|++|+|||+.+.+.+ .++.+++|+.- -+...++.++.+.+|..
T Consensus 19 ~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~-e~~~~~i~~~~~~~g~~ 73 (229)
T TIGR03881 19 RGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTT-EESRESIIRQAAQFGMD 73 (229)
T ss_pred CCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEc-cCCHHHHHHHHHHhCCC
Confidence 48899999999999999875433 34456677643 33345555566665543
No 374
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=90.59 E-value=0.37 Score=44.33 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=26.3
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEcc
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGP 109 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P 109 (499)
.++.+.+.||+|||||..+++.+. .+.+++|+.-
T Consensus 11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~ 48 (209)
T TIGR02237 11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDT 48 (209)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 478999999999999999876553 3456777743
No 375
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.25 E-value=0.24 Score=45.31 Aligned_cols=16 Identities=44% Similarity=0.750 Sum_probs=14.5
Q ss_pred eEEEEccCCccHHHHH
Q 010836 79 VILHVGPTNSGKTHQA 94 (499)
Q Consensus 79 ~vli~apTGsGKT~~~ 94 (499)
.++++||||||||+..
T Consensus 3 lilI~GptGSGKTTll 18 (198)
T cd01131 3 LVLVTGPTGSGKSTTL 18 (198)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999995
No 376
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=90.18 E-value=0.28 Score=51.34 Aligned_cols=20 Identities=45% Similarity=0.660 Sum_probs=16.8
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..++++||||||||+..
T Consensus 240 ~~~GlilitGptGSGKTTtL 259 (486)
T TIGR02533 240 RPHGIILVTGPTGSGKTTTL 259 (486)
T ss_pred cCCCEEEEEcCCCCCHHHHH
Confidence 34567899999999999985
No 377
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=90.12 E-value=0.59 Score=45.92 Aligned_cols=79 Identities=23% Similarity=0.251 Sum_probs=49.4
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceee
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~ 151 (499)
.++.+.+.||+|||||+.+++.+. .+++++|+-..-.+-.+ .++.+|+... .++++.|..
T Consensus 54 ~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~---~a~~lGvd~~-------------~l~v~~p~~ 117 (321)
T TIGR02012 54 RGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV---YARKLGVDID-------------NLLVSQPDT 117 (321)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH---HHHHcCCCHH-------------HeEEecCCC
Confidence 478999999999999999876553 45788888554444443 3444554421 222333211
Q ss_pred -------cc---ccCCccEEEEecCcccC
Q 010836 152 -------AD---VVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 152 -------~~---~l~~~~~iViDEah~~~ 170 (499)
+. --..+++||||-+-.+.
T Consensus 118 ~eq~l~~~~~li~~~~~~lIVIDSv~al~ 146 (321)
T TIGR02012 118 GEQALEIAETLVRSGAVDIIVVDSVAALV 146 (321)
T ss_pred HHHHHHHHHHHhhccCCcEEEEcchhhhc
Confidence 11 11568999999987654
No 378
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=90.09 E-value=1.1 Score=45.78 Aligned_cols=94 Identities=14% Similarity=0.126 Sum_probs=54.4
Q ss_pred ceEEEEccCCccHHHHHHHH----H-H--cCCCEEEEccHHH-HHHHHHHHHH----hcCCceeEeeCCe--ec-ccC-C
Q 010836 78 KVILHVGPTNSGKTHQALSR----L-E--SSSSGIYCGPLRL-LAWEVAKRLN----KANVSCDLITGQE--RE-EVD-G 141 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l~~----l-~--~~~~~l~l~P~r~-La~q~~~~l~----~~g~~~~~~~g~~--~~-~~~-~ 141 (499)
+..++.|..|||||..+... + . ...+.+++-|+.. |...++..+. .+|+....-.... .. ... +
T Consensus 2 ~~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~~i~~~~~g 81 (396)
T TIGR01547 2 EEIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSMEIKILNTG 81 (396)
T ss_pred ceEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCccEEEecCCC
Confidence 35688999999999996322 2 2 3456677877776 5556666555 4555422221211 11 112 3
Q ss_pred CceEEEce-eec---cccCCccEEEEecCcccCC
Q 010836 142 AKHRAVTV-EMA---DVVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 142 ~~~iv~T~-e~~---~~l~~~~~iViDEah~~~~ 171 (499)
..+++.+- +-. .....++.+.+|||..+..
T Consensus 82 ~~i~f~g~~d~~~~ik~~~~~~~~~idEa~~~~~ 115 (396)
T TIGR01547 82 KKFIFKGLNDKPNKLKSGAGIAIIWFEEASQLTF 115 (396)
T ss_pred eEEEeecccCChhHhhCcceeeeehhhhhhhcCH
Confidence 34444444 211 2224479999999999863
No 379
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=90.03 E-value=0.5 Score=46.56 Aligned_cols=17 Identities=47% Similarity=0.737 Sum_probs=15.3
Q ss_pred eEEEEccCCccHHHHHH
Q 010836 79 VILHVGPTNSGKTHQAL 95 (499)
Q Consensus 79 ~vli~apTGsGKT~~~l 95 (499)
-++++||.|+|||..+.
T Consensus 26 alL~~Gp~G~Gktt~a~ 42 (325)
T COG0470 26 ALLFYGPPGVGKTTAAL 42 (325)
T ss_pred eeeeeCCCCCCHHHHHH
Confidence 49999999999999974
No 380
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=90.00 E-value=0.52 Score=50.93 Aligned_cols=56 Identities=13% Similarity=-0.022 Sum_probs=44.3
Q ss_pred CCceEEEEccCCccHHHHH-HHHHHc-CCCEEEEccHHHHHHHHHHHHHhcCCceeEe
Q 010836 76 VRKVILHVGPTNSGKTHQA-LSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLI 131 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~-l~~l~~-~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~ 131 (499)
...++++.||||||||... +..++. .+.++++=|..|+...+....++.|.+|-++
T Consensus 223 g~~H~Lv~ApTgsGKt~g~VIPnLL~~~gS~VV~DpKgEl~~~Ta~~R~~~G~~V~vf 280 (641)
T PRK13822 223 GSTHGLVFAGSGGFKTTSVVVPTALKWGGPLVVLDPSTEVAPMVSEHRRDAGREVIVL 280 (641)
T ss_pred CCceEEEEeCCCCCccceEehhhhhcCCCCEEEEeCcHHHHHHHHHHHHHCCCeEEEE
Confidence 3578999999999999984 444444 5678888899999988888777777777665
No 381
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=89.93 E-value=0.37 Score=47.14 Aligned_cols=21 Identities=57% Similarity=0.705 Sum_probs=17.4
Q ss_pred CceEEEEccCCccHHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALSR 97 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~ 97 (499)
.+.++++||||||||..+...
T Consensus 4 ~~~i~i~GptgsGKt~la~~l 24 (307)
T PRK00091 4 PKVIVIVGPTASGKTALAIEL 24 (307)
T ss_pred ceEEEEECCCCcCHHHHHHHH
Confidence 468899999999999776543
No 382
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=89.93 E-value=0.71 Score=39.32 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=18.6
Q ss_pred eEEEEccCCccHHHHHHHHHHcCC
Q 010836 79 VILHVGPTNSGKTHQALSRLESSS 102 (499)
Q Consensus 79 ~vli~apTGsGKT~~~l~~l~~~~ 102 (499)
.++++||+|||||+.+-......+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 378999999999999766554444
No 383
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=89.92 E-value=0.77 Score=48.40 Aligned_cols=19 Identities=47% Similarity=0.578 Sum_probs=16.5
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
.+.+++.||+|+|||+.+-
T Consensus 88 ~~giLL~GppGtGKT~la~ 106 (495)
T TIGR01241 88 PKGVLLVGPPGTGKTLLAK 106 (495)
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4679999999999999863
No 384
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.86 E-value=0.82 Score=45.81 Aligned_cols=53 Identities=23% Similarity=0.247 Sum_probs=31.8
Q ss_pred CCceEEEEccCCccHHHHHH----HHHHcCCCEEEE--ccHHHHHHHHHHHH-HhcCCce
Q 010836 76 VRKVILHVGPTNSGKTHQAL----SRLESSSSGIYC--GPLRLLAWEVAKRL-NKANVSC 128 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l----~~l~~~~~~l~l--~P~r~La~q~~~~l-~~~g~~~ 128 (499)
.++.++++||||+|||+.+. ....++.++.++ =|.|.-|.++.+.. ...++++
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv 264 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVEL 264 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCE
Confidence 47889999999999999852 222334455444 35565444444333 3445544
No 385
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=89.75 E-value=0.86 Score=42.88 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=30.1
Q ss_pred CCceEEEEccCCccHHHHHHHHH----Hc-CCCEEEE---ccHHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALSRL----ES-SSSGIYC---GPLRLLAWEV 117 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l----~~-~~~~l~l---~P~r~La~q~ 117 (499)
.+..+++.|++|+|||..+++.+ .+ +.+++|+ .|..+++..+
T Consensus 12 ~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~~~~~r~ 61 (242)
T cd00984 12 PGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKEQLLQRL 61 (242)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHHHHHHHH
Confidence 47899999999999999875543 34 5677887 4555555444
No 386
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.74 E-value=0.17 Score=54.31 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.8
Q ss_pred ceEEEEccCCccHHHHHH
Q 010836 78 KVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l 95 (499)
+..+++||.|+|||+.|.
T Consensus 39 ha~Lf~Gp~GvGKttlA~ 56 (620)
T PRK14954 39 HGYIFSGLRGVGKTTAAR 56 (620)
T ss_pred eeEEEECCCCCCHHHHHH
Confidence 558899999999999973
No 387
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=89.72 E-value=0.33 Score=46.72 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=21.8
Q ss_pred cCCceEEEEccCCccHHHHHHHHHHc
Q 010836 75 KVRKVILHVGPTNSGKTHQALSRLES 100 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l~~l~~ 100 (499)
..++.++++||||+|||...-..+.+
T Consensus 31 ~~~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 31 SNGRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HCTEEEEEESSTTSSHHHHHHHHHHC
T ss_pred HcCCcEEEECCCCCchhHHHHhhhcc
Confidence 46899999999999999987666643
No 388
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=89.65 E-value=0.44 Score=52.79 Aligned_cols=16 Identities=50% Similarity=0.698 Sum_probs=14.4
Q ss_pred eEEEEccCCccHHHHH
Q 010836 79 VILHVGPTNSGKTHQA 94 (499)
Q Consensus 79 ~vli~apTGsGKT~~~ 94 (499)
.+++.||||+|||..+
T Consensus 486 ~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 486 SFLFTGPTGVGKTELA 501 (731)
T ss_pred eEEEECCCCccHHHHH
Confidence 5789999999999886
No 389
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=89.63 E-value=0.84 Score=46.40 Aligned_cols=52 Identities=33% Similarity=0.358 Sum_probs=34.1
Q ss_pred CceEEEEccCCccHHHHHHHHH----Hc-CCCEEEE--ccHHHHHHHHHHHHH-hcCCce
Q 010836 77 RKVILHVGPTNSGKTHQALSRL----ES-SSSGIYC--GPLRLLAWEVAKRLN-KANVSC 128 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~l----~~-~~~~l~l--~P~r~La~q~~~~l~-~~g~~~ 128 (499)
+..++++||||+|||+.+.... .. +.++.++ =+.|..+.++.++.. ..|+++
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~ 282 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPF 282 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCe
Confidence 5678899999999999973322 22 3345444 566777777766664 345543
No 390
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=89.59 E-value=2.2 Score=48.24 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
...+.++.||+|+|||..+
T Consensus 193 ~~~n~lL~G~pGvGKT~l~ 211 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIV 211 (852)
T ss_pred CCCceEEEcCCCCCHHHHH
Confidence 4678999999999999886
No 391
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.47 E-value=0.34 Score=47.63 Aligned_cols=54 Identities=22% Similarity=0.185 Sum_probs=33.7
Q ss_pred CCCCchhccchHHHhcCCceEEEEccCCccHHHHH---HHHHHcCCCEEEEccHHHH
Q 010836 60 TDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQA---LSRLESSSSGIYCGPLRLL 113 (499)
Q Consensus 60 ~~l~~~q~~~~~~~~~~~~~vli~apTGsGKT~~~---l~~l~~~~~~l~l~P~r~L 113 (499)
..++..|.++-......+++++++|+||||||+.. +..+-...+.+.+--+.++
T Consensus 126 gt~~~~~~ayL~~~ie~~~siii~G~t~sGKTt~lnall~~Ip~~~rivtIEdt~E~ 182 (312)
T COG0630 126 GTISPEQAAYLWLAIEARKSIIICGGTASGKTTLLNALLDFIPPEERIVTIEDTPEL 182 (312)
T ss_pred CCCCHHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHhCCchhcEEEEeccccc
Confidence 34455555333333357999999999999999984 2333345566666444433
No 392
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=89.46 E-value=0.5 Score=43.76 Aligned_cols=32 Identities=25% Similarity=0.278 Sum_probs=25.6
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEE
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYC 107 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l 107 (499)
.+..+.+.|++|||||+.+++.+. .+.+++|+
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi 53 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYI 53 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 478899999999999999876553 34577787
No 393
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=89.45 E-value=0.69 Score=45.52 Aligned_cols=49 Identities=24% Similarity=0.240 Sum_probs=34.9
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCc
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVS 127 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~r~La~q~~~~l~~~g~~ 127 (499)
.++.+.+.||+|||||+.+++.+. .+++++|+-+.-.+-.+ .++.+|+.
T Consensus 54 ~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~---~a~~lGvd 106 (325)
T cd00983 54 KGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPV---YAKKLGVD 106 (325)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHH---HHHHcCCC
Confidence 378999999999999999877653 45788999665554443 34445543
No 394
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=89.41 E-value=0.71 Score=49.70 Aligned_cols=55 Identities=13% Similarity=0.072 Sum_probs=43.3
Q ss_pred CceEEEEccCCccHHHHH--HHHHHcCCCEEEEccHHHHHHHHHHHHHhcC-CceeEe
Q 010836 77 RKVILHVGPTNSGKTHQA--LSRLESSSSGIYCGPLRLLAWEVAKRLNKAN-VSCDLI 131 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~--l~~l~~~~~~l~l~P~r~La~q~~~~l~~~g-~~~~~~ 131 (499)
..++++.||||||||..+ +..|...+.++++=|--|+...+...-++.| .+|-++
T Consensus 211 ~~H~lv~ApTgsGKgvg~VIPnLL~~~gS~VV~DpKgE~~~~Ta~~R~~~Gg~~V~vf 268 (623)
T TIGR02767 211 STHMIFFAGSGGFKTTSVVVPTALKYGGPLVCLDPSTEVAPMVCEHRRQAGNRKVIVL 268 (623)
T ss_pred CceEEEEeCCCCCccceeehhhhhcCCCCEEEEEChHHHHHHHHHHHHHcCCCcEEEE
Confidence 579999999999999984 4444446788999999999888887666776 666654
No 395
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=89.40 E-value=0.48 Score=47.75 Aligned_cols=85 Identities=15% Similarity=0.137 Sum_probs=50.2
Q ss_pred cCCceEEEEccCCccHHHHH--HHHHHcC-CCE-EEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEcee
Q 010836 75 KVRKVILHVGPTNSGKTHQA--LSRLESS-SSG-IYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVE 150 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~--l~~l~~~-~~~-l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e 150 (499)
-.+..|++.|+||+||++.| +..+... ..+ .+-+.--+++.....- .-+|..-+..+|...... .
T Consensus 99 p~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~-eLFG~~kGaftGa~~~k~---G------- 167 (403)
T COG1221 99 PSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEA-ELFGHEKGAFTGAQGGKA---G------- 167 (403)
T ss_pred CCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHH-HHhccccceeecccCCcC---c-------
Confidence 45899999999999999997 4433333 233 3434444444333221 145777777777332210 0
Q ss_pred eccccCCccEEEEecCcccCC
Q 010836 151 MADVVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 151 ~~~~l~~~~~iViDEah~~~~ 171 (499)
.+.. -+=+.+.+||+|.+.-
T Consensus 168 lfe~-A~GGtLfLDEI~~LP~ 187 (403)
T COG1221 168 LFEQ-ANGGTLFLDEIHRLPP 187 (403)
T ss_pred hhee-cCCCEEehhhhhhCCH
Confidence 0000 2337899999999864
No 396
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=89.36 E-value=0.77 Score=50.06 Aligned_cols=65 Identities=14% Similarity=0.044 Sum_probs=48.5
Q ss_pred CCCCchhc-cchHHHhc--CC-ceEEEEccCCccHHHHHHHHHHc-CCCEEEEccHHHHHHHHHHHHHhc
Q 010836 60 TDLTRPHT-WYPLARKK--VR-KVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKA 124 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~--~~-~~vli~apTGsGKT~~~l~~l~~-~~~~l~l~P~r~La~q~~~~l~~~ 124 (499)
..|+..|. ++..+... ++ +..++.|.||||||+.+...+.. +..+|+++|+...|.++++.+..+
T Consensus 11 ~~~~~~Q~~ai~~l~~~~~~~~~~~ll~Gl~gs~ka~lia~l~~~~~r~vLIVt~~~~~A~~l~~dL~~~ 80 (652)
T PRK05298 11 YKPAGDQPQAIEELVEGIEAGEKHQTLLGVTGSGKTFTMANVIARLQRPTLVLAHNKTLAAQLYSEFKEF 80 (652)
T ss_pred CCCChHHHHHHHHHHHhhhcCCCcEEEEcCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHh
Confidence 34667777 55554222 12 24679999999999997665554 567899999999999999999865
No 397
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=89.34 E-value=1.6 Score=48.01 Aligned_cols=78 Identities=13% Similarity=0.201 Sum_probs=61.1
Q ss_pred CEEEEe-eHHHHHHHHHHHHHcC---CCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecch-hhcccccc-ccEEEE
Q 010836 241 DCIVTF-SRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA-IGMGLNLN-ISRIIF 314 (499)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~---~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~-~~~Gidip-v~~VI~ 314 (499)
++++.. |+.-+.+.++.+++.. ..++..+||+++..+|..+.+...+ |+.+|+|+|.. +...+.++ +..||.
T Consensus 312 q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~--g~~~IvVgT~~ll~~~v~~~~l~lvVI 389 (681)
T PRK10917 312 QAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIAS--GEADIVIGTHALIQDDVEFHNLGLVII 389 (681)
T ss_pred eEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhC--CCCCEEEchHHHhcccchhcccceEEE
Confidence 455555 8888888877776543 2489999999999999999999999 99999999974 44457784 998887
Q ss_pred cccccc
Q 010836 315 STMKKF 320 (499)
Q Consensus 315 ~~~~~~ 320 (499)
....+|
T Consensus 390 DE~Hrf 395 (681)
T PRK10917 390 DEQHRF 395 (681)
T ss_pred echhhh
Confidence 666543
No 398
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=89.33 E-value=1.5 Score=38.63 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=17.2
Q ss_pred CceEEEEccCCccHHHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALSRL 98 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~l 98 (499)
.+..++.||.|+||+..+...+
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a 40 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFA 40 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHH
T ss_pred ceeEEEECCCCCCHHHHHHHHH
Confidence 4668999999999999975433
No 399
>PRK14530 adenylate kinase; Provisional
Probab=89.33 E-value=0.29 Score=45.34 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=17.5
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~ 96 (499)
.+..+++.||+|||||+++-.
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~ 22 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSN 22 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 356799999999999998743
No 400
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=89.29 E-value=1.7 Score=48.01 Aligned_cols=20 Identities=35% Similarity=0.400 Sum_probs=17.3
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
....+++++||+|+|||..+
T Consensus 205 ~~~~n~LLvGppGvGKT~la 224 (758)
T PRK11034 205 RRKNNPLLVGESGVGKTAIA 224 (758)
T ss_pred cCCCCeEEECCCCCCHHHHH
Confidence 34678999999999999885
No 401
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=89.20 E-value=0.28 Score=50.31 Aligned_cols=42 Identities=21% Similarity=0.214 Sum_probs=31.1
Q ss_pred cCCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWE 116 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l~~l----~~~~~~l~l~P~r~La~q 116 (499)
...+++++.|+||||||......+ ..+.+++++=|..++...
T Consensus 40 ~~~~h~~i~g~tGsGKt~~i~~l~~~~~~~~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 40 AEEAHTMIIGTTGTGKTTQIRELLASIRARGDRAIIYDPNGGFVSK 85 (410)
T ss_pred hhhccEEEEcCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcchhHh
Confidence 457899999999999999853322 335678888888776543
No 402
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=89.19 E-value=0.42 Score=54.09 Aligned_cols=112 Identities=17% Similarity=0.135 Sum_probs=70.3
Q ss_pred CCCCchhc-cchHHH---hcCCceEEEEccCCccHHHHHHHHHHc--------CCCEEEEccHHHHHHHHHHHHHhc--C
Q 010836 60 TDLTRPHT-WYPLAR---KKVRKVILHVGPTNSGKTHQALSRLES--------SSSGIYCGPLRLLAWEVAKRLNKA--N 125 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~---~~~~~~vli~apTGsGKT~~~l~~l~~--------~~~~l~l~P~r~La~q~~~~l~~~--g 125 (499)
..+++.|. .+.... ...+...++....|.|||.+.+..+.. .+..++++|+-.+ .++.+.+.++ .
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~~-~nw~~e~~k~~~~ 415 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASLL-SNWKREFEKFAPD 415 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHHH-HHHHHHHhhhCcc
Confidence 45666676 444432 224667788899999999997655532 3567888998554 4555555544 3
Q ss_pred Cc-eeEeeCCeec------cc---CC------CceEEEceeeccc-------c--CCccEEEEecCcccCCC
Q 010836 126 VS-CDLITGQERE------EV---DG------AKHRAVTVEMADV-------V--SDYDCAVIDEIQMLGCK 172 (499)
Q Consensus 126 ~~-~~~~~g~~~~------~~---~~------~~~iv~T~e~~~~-------l--~~~~~iViDEah~~~~~ 172 (499)
.. +...+|.... .. .. ..+++.|.+.+.. + ..++.+|+||+|.+.+.
T Consensus 416 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~ 487 (866)
T COG0553 416 LRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKND 487 (866)
T ss_pred ccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhh
Confidence 34 5566675531 11 11 4566666655433 1 66899999999998643
No 403
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.18 E-value=0.4 Score=51.72 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=16.4
Q ss_pred ccccCCccEEEEecCcccCC
Q 010836 152 ADVVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 152 ~~~l~~~~~iViDEah~~~~ 171 (499)
..+..+.+++||||+|.+..
T Consensus 116 ~P~~~~~KVvIIdea~~Ls~ 135 (614)
T PRK14971 116 PPQIGKYKIYIIDEVHMLSQ 135 (614)
T ss_pred CcccCCcEEEEEECcccCCH
Confidence 34567899999999999974
No 404
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=89.09 E-value=0.36 Score=48.41 Aligned_cols=20 Identities=25% Similarity=0.391 Sum_probs=17.4
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..++++||||||||+..
T Consensus 132 ~~~glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLL 151 (358)
T ss_pred ccCCEEEEECCCCCCHHHHH
Confidence 35789999999999999874
No 405
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=89.09 E-value=1.1 Score=49.58 Aligned_cols=79 Identities=9% Similarity=0.206 Sum_probs=55.5
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHHcC----CCeEEE-EcCCCCHHHHHHHHHHhcCCCCCccEEEecchhh-ccccc---
Q 010836 238 QTGDCIVTF-SRHAIYRLKKAIESRG----KHLCSI-VYGSLPPETRTRQATRFNDASSEFDVLVASDAIG-MGLNL--- 307 (499)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~----~~~v~~-~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~-~Gidi--- 307 (499)
..+++.+++ |..-+.+.++.|++.. ...+.. +||.|+.+++++.+++|.+ |..+|||+|+.+- .-.+.
T Consensus 124 kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~--gdfdIlitTs~FL~k~~e~L~~ 201 (1187)
T COG1110 124 KGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIES--GDFDILITTSQFLSKRFEELSK 201 (1187)
T ss_pred cCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhc--CCccEEEEeHHHHHhhHHHhcc
Confidence 445666666 8777777777776542 123333 9999999999999999999 9999999998542 22332
Q ss_pred -cccEEEEcccc
Q 010836 308 -NISRIIFSTMK 318 (499)
Q Consensus 308 -pv~~VI~~~~~ 318 (499)
..+.|+..|..
T Consensus 202 ~kFdfifVDDVD 213 (1187)
T COG1110 202 LKFDFIFVDDVD 213 (1187)
T ss_pred cCCCEEEEccHH
Confidence 26666655543
No 406
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=88.92 E-value=0.6 Score=43.51 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=25.5
Q ss_pred CCceEEEEccCCccHHHHHHHHH----HcCCCEEEE
Q 010836 76 VRKVILHVGPTNSGKTHQALSRL----ESSSSGIYC 107 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l----~~~~~~l~l 107 (499)
.+..+.+.|++|+|||..+++.+ ..+.+++|+
T Consensus 22 ~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi 57 (225)
T PRK09361 22 RGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYI 57 (225)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 37899999999999999976655 345677777
No 407
>PRK13764 ATPase; Provisional
Probab=88.89 E-value=0.47 Score=50.59 Aligned_cols=38 Identities=21% Similarity=0.122 Sum_probs=24.5
Q ss_pred CCceEEEEccCCccHHHHH---HHHHHcCCCEE-EEccHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA---LSRLESSSSGI-YCGPLRLL 113 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~---l~~l~~~~~~l-~l~P~r~L 113 (499)
.+++++++||||||||+.+ +..+...++.+ .+--.+++
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~~~~riV~TiEDp~El 297 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYADMGKIVKTMESPRDL 297 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEEEEECCCccc
Confidence 4788999999999999885 23334444444 44333333
No 408
>PRK14873 primosome assembly protein PriA; Provisional
Probab=88.85 E-value=1.3 Score=48.16 Aligned_cols=72 Identities=14% Similarity=0.157 Sum_probs=56.8
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcCC-CeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc---ccEEE
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRGK-HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN---ISRII 313 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~-~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip---v~~VI 313 (499)
.++.+|.+ ....+.++.+.|++... ..+..+|+++++.+|.+......+ |+.+|+|.|-.+ +=.| ...||
T Consensus 188 Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~--G~~~IViGtRSA---vFaP~~~LgLII 262 (665)
T PRK14873 188 GRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLR--GQARVVVGTRSA---VFAPVEDLGLVA 262 (665)
T ss_pred CCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhC--CCCcEEEEccee---EEeccCCCCEEE
Confidence 44566666 78899999999987664 579999999999999999999998 999999999653 2335 45565
Q ss_pred Ec
Q 010836 314 FS 315 (499)
Q Consensus 314 ~~ 315 (499)
..
T Consensus 263 vd 264 (665)
T PRK14873 263 IW 264 (665)
T ss_pred EE
Confidence 43
No 409
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=88.80 E-value=0.3 Score=40.80 Aligned_cols=17 Identities=47% Similarity=0.628 Sum_probs=14.5
Q ss_pred EEEEccCCccHHHHHHH
Q 010836 80 ILHVGPTNSGKTHQALS 96 (499)
Q Consensus 80 vli~apTGsGKT~~~l~ 96 (499)
+++.||.|+|||+.+-.
T Consensus 1 ill~G~~G~GKT~l~~~ 17 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARA 17 (132)
T ss_dssp EEEESSTTSSHHHHHHH
T ss_pred CEEECcCCCCeeHHHHH
Confidence 58999999999988643
No 410
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=88.76 E-value=0.88 Score=48.69 Aligned_cols=21 Identities=38% Similarity=0.550 Sum_probs=17.8
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~ 96 (499)
..+..+++||.|-|||+.|=-
T Consensus 325 ~kKilLL~GppGlGKTTLAHV 345 (877)
T KOG1969|consen 325 PKKILLLCGPPGLGKTTLAHV 345 (877)
T ss_pred ccceEEeecCCCCChhHHHHH
Confidence 368999999999999987633
No 411
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=88.66 E-value=0.25 Score=53.41 Aligned_cols=46 Identities=20% Similarity=-0.010 Sum_probs=34.9
Q ss_pred cCCceEEEEccCCccHHHHHHHHHHc----CC--CEEEEccHHHHHHHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQALSRLES----SS--SGIYCGPLRLLAWEVAKR 120 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l~~l~~----~~--~~l~l~P~r~La~q~~~~ 120 (499)
-+.-++=|.++||+|||++|+..+.+ .| +-|++||+.+.-..+...
T Consensus 72 ~~~lNiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~ 123 (985)
T COG3587 72 DDKLNIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLT 123 (985)
T ss_pred CCcceeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhHHH
Confidence 34567789999999999999887754 22 458999999987665433
No 412
>KOG2373 consensus Predicted mitochondrial DNA helicase twinkle [Replication, recombination and repair]
Probab=88.66 E-value=0.65 Score=45.21 Aligned_cols=47 Identities=23% Similarity=0.266 Sum_probs=33.5
Q ss_pred CCceEEEEccCCccHHHHH----HHHHHcCCCEEEE---ccHHHHHHHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA----LSRLESSSSGIYC---GPLRLLAWEVAKRLN 122 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~----l~~l~~~~~~l~l---~P~r~La~q~~~~l~ 122 (499)
.+.-.++.||||||||+-. +-...++-+.++. .|..-||..+.....
T Consensus 272 ~GElTvlTGpTGsGKTTFlsEYsLDL~~QGVnTLwgSFEi~n~rla~~mL~Qya 325 (514)
T KOG2373|consen 272 PGELTVLTGPTGSGKTTFLSEYSLDLFTQGVNTLWGSFEIPNKRLAHWMLVQYA 325 (514)
T ss_pred CCceEEEecCCCCCceeEehHhhHHHHhhhhhheeeeeecchHHHHHHHHHHHc
Confidence 4678999999999999873 3333445466666 677778777766554
No 413
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=88.59 E-value=0.48 Score=50.53 Aligned_cols=19 Identities=32% Similarity=0.478 Sum_probs=16.1
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
.+.++++||.|+|||+.+.
T Consensus 38 ~hayLf~Gp~G~GKTt~Ar 56 (563)
T PRK06647 38 ANAYIFSGPRGVGKTSSAR 56 (563)
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3568999999999999973
No 414
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=88.57 E-value=0.5 Score=47.36 Aligned_cols=18 Identities=39% Similarity=0.571 Sum_probs=15.6
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
.+.++++||.|+|||..+
T Consensus 36 ~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 36 AHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356799999999999886
No 415
>PRK09354 recA recombinase A; Provisional
Probab=88.53 E-value=0.8 Score=45.46 Aligned_cols=78 Identities=23% Similarity=0.290 Sum_probs=49.4
Q ss_pred CceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEcee--
Q 010836 77 RKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVE-- 150 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e-- 150 (499)
++.+.+.||+|||||+.+++.+. .++.++|+-.--.+-. +.++.+|+.+. .+++..|.
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~---~~a~~lGvdld-------------~lli~qp~~~ 123 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP---VYAKKLGVDID-------------NLLVSQPDTG 123 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH---HHHHHcCCCHH-------------HeEEecCCCH
Confidence 78999999999999999877663 4578899955444443 24445555431 12233221
Q ss_pred -----eccc---cCCccEEEEecCcccC
Q 010836 151 -----MADV---VSDYDCAVIDEIQMLG 170 (499)
Q Consensus 151 -----~~~~---l~~~~~iViDEah~~~ 170 (499)
.++. -..+++||||=+-.+.
T Consensus 124 Eq~l~i~~~li~s~~~~lIVIDSvaaL~ 151 (349)
T PRK09354 124 EQALEIADTLVRSGAVDLIVVDSVAALV 151 (349)
T ss_pred HHHHHHHHHHhhcCCCCEEEEeChhhhc
Confidence 1111 1568999999876553
No 416
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=88.46 E-value=0.35 Score=43.23 Aligned_cols=19 Identities=26% Similarity=0.419 Sum_probs=16.1
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
++.+++.||+|||||+.+-
T Consensus 1 g~ii~l~G~~GsGKsTl~~ 19 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVK 19 (180)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4678999999999998753
No 417
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=88.46 E-value=0.93 Score=40.91 Aligned_cols=47 Identities=28% Similarity=0.331 Sum_probs=29.5
Q ss_pred CCceEEEEccCCccHHHHHHHHHH--------------cCCCEEEEccHHHHHHHHHHHHHh
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE--------------SSSSGIYCGPLRLLAWEVAKRLNK 123 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~--------------~~~~~l~l~P~r~La~q~~~~l~~ 123 (499)
.+..+++.||+|+|||+.+++.+. ...+++|+..--. ..++.+++..
T Consensus 31 ~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~ 91 (193)
T PF13481_consen 31 RGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRA 91 (193)
T ss_dssp TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHH
Confidence 488999999999999999754332 2346788743333 4455566653
No 418
>PRK10867 signal recognition particle protein; Provisional
Probab=88.41 E-value=1.3 Score=45.55 Aligned_cols=52 Identities=29% Similarity=0.284 Sum_probs=32.7
Q ss_pred CceEEEEccCCccHHHHHH---HHHH-c-CCCEEEE--ccHHHHHHHHHHHHH-hcCCce
Q 010836 77 RKVILHVGPTNSGKTHQAL---SRLE-S-SSSGIYC--GPLRLLAWEVAKRLN-KANVSC 128 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l---~~l~-~-~~~~l~l--~P~r~La~q~~~~l~-~~g~~~ 128 (499)
...++++|++|+|||+.+. .++. . +.+++++ =+.|..+.++.+.+. ..|+++
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v 159 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPV 159 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeE
Confidence 4678899999999999862 2232 3 4456555 456666655554444 455554
No 419
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=88.32 E-value=0.49 Score=47.31 Aligned_cols=20 Identities=45% Similarity=0.690 Sum_probs=17.5
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..++++||||||||+..
T Consensus 120 ~~~g~ili~G~tGSGKTT~l 139 (343)
T TIGR01420 120 RPRGLILVTGPTGSGKSTTL 139 (343)
T ss_pred hcCcEEEEECCCCCCHHHHH
Confidence 34688999999999999985
No 420
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=88.29 E-value=0.63 Score=42.39 Aligned_cols=20 Identities=35% Similarity=0.277 Sum_probs=15.7
Q ss_pred EEEEccCCccHHHHH--HHHHH
Q 010836 80 ILHVGPTNSGKTHQA--LSRLE 99 (499)
Q Consensus 80 vli~apTGsGKT~~~--l~~l~ 99 (499)
+.+.||+|||||+.+ +..++
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 678999999999986 44444
No 421
>PRK05480 uridine/cytidine kinase; Provisional
Probab=88.29 E-value=0.69 Score=42.53 Aligned_cols=19 Identities=37% Similarity=0.316 Sum_probs=16.4
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
++..+.|.|++|||||+.+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~ 23 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVA 23 (209)
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4568889999999999886
No 422
>PRK08233 hypothetical protein; Provisional
Probab=88.24 E-value=0.38 Score=43.00 Aligned_cols=19 Identities=26% Similarity=0.281 Sum_probs=16.2
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
...+.+.|++|||||+.+-
T Consensus 3 ~~iI~I~G~~GsGKtTla~ 21 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTE 21 (182)
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4678889999999999873
No 423
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=88.22 E-value=0.53 Score=50.18 Aligned_cols=88 Identities=26% Similarity=0.411 Sum_probs=49.0
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecc--cCCCceEEEc--e-e
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE--VDGAKHRAVT--V-E 150 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~--~~~~~~iv~T--~-e 150 (499)
+|+.++.+||+|-||| +++..+++.+...-.+..+ |+.... ..+.+-.+++ | .
T Consensus 437 qGkIlCf~GPPGVGKT--------------------SI~kSIA~ALnRkFfRfSv--GG~tDvAeIkGHRRTYVGAMPGk 494 (906)
T KOG2004|consen 437 QGKILCFVGPPGVGKT--------------------SIAKSIARALNRKFFRFSV--GGMTDVAEIKGHRRTYVGAMPGK 494 (906)
T ss_pred CCcEEEEeCCCCCCcc--------------------cHHHHHHHHhCCceEEEec--cccccHHhhcccceeeeccCChH
Confidence 6899999999999999 4455666666532222222 433222 1122222222 2 3
Q ss_pred eccccCC----ccEEEEecCcccCCCCCChhHHHHHhccc
Q 010836 151 MADVVSD----YDCAVIDEIQMLGCKTRGFSFTRALLGIC 186 (499)
Q Consensus 151 ~~~~l~~----~~~iViDEah~~~~~~~g~~~~~~ll~l~ 186 (499)
+.+.+++ --++.|||+|.+....+|-- ..+|+.+.
T Consensus 495 iIq~LK~v~t~NPliLiDEvDKlG~g~qGDP-asALLElL 533 (906)
T KOG2004|consen 495 IIQCLKKVKTENPLILIDEVDKLGSGHQGDP-ASALLELL 533 (906)
T ss_pred HHHHHHhhCCCCceEEeehhhhhCCCCCCCh-HHHHHHhc
Confidence 3344433 34899999999974444433 44455443
No 424
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=88.18 E-value=1.4 Score=45.50 Aligned_cols=104 Identities=21% Similarity=0.190 Sum_probs=55.0
Q ss_pred ceEEEEccCCccHHHHHHHHHHcC--CCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceeecccc
Q 010836 78 KVILHVGPTNSGKTHQALSRLESS--SSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVV 155 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l~~l~~~--~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~~l 155 (499)
..+++.||.|||||..|.+.-... +-+=+|.|..-....=..++... .+-... ..-
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i-------~k~F~D---------------AYk 596 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHI-------KKIFED---------------AYK 596 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHH-------HHHHHH---------------hhc
Confidence 578999999999998776554443 23445566433221111111100 000000 112
Q ss_pred CCccEEEEecCcccCCC-CCChhHHHHHhc--------cccc--cceEeecCCCchHHH
Q 010836 156 SDYDCAVIDEIQMLGCK-TRGFSFTRALLG--------ICAN--ELHLCGDPAAVPLIQ 203 (499)
Q Consensus 156 ~~~~~iViDEah~~~~~-~~g~~~~~~ll~--------l~~~--~~~~~~~~~~~~~~~ 203 (499)
+.+.++|+|++..+.|. .-|+.+...++. .+++ .+.+++.++.....+
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~ 655 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQ 655 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHH
Confidence 56889999999998753 225556544322 2222 445566665544443
No 425
>PRK08118 topology modulation protein; Reviewed
Probab=88.12 E-value=0.37 Score=42.72 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=14.9
Q ss_pred ceEEEEccCCccHHHHH
Q 010836 78 KVILHVGPTNSGKTHQA 94 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~ 94 (499)
+.++|+||.|||||+.+
T Consensus 2 ~rI~I~G~~GsGKSTla 18 (167)
T PRK08118 2 KKIILIGSGGSGKSTLA 18 (167)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35899999999999886
No 426
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=88.06 E-value=0.7 Score=45.38 Aligned_cols=94 Identities=18% Similarity=0.200 Sum_probs=52.4
Q ss_pred ceEEEEccCCccHHHHHHHHHHcCC-C---EEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceeecc
Q 010836 78 KVILHVGPTNSGKTHQALSRLESSS-S---GIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMAD 153 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l~~l~~~~-~---~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~ 153 (499)
..+|+.||.|+|||..|-......+ . -|=+.-|.+-..++...+.+.... ..
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~~------------------------~~ 218 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQNE------------------------KS 218 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHHH------------------------Hh
Confidence 5789999999999998844333332 2 233455555555555555431000 00
Q ss_pred ccCCccEEEEecCcccCCCCCChhHHHHHhc-cccccceEeecCCCch
Q 010836 154 VVSDYDCAVIDEIQMLGCKTRGFSFTRALLG-ICANELHLCGDPAAVP 200 (499)
Q Consensus 154 ~l~~~~~iViDEah~~~~~~~g~~~~~~ll~-l~~~~~~~~~~~~~~~ 200 (499)
+.++-.++.|||+|++.-. ..+.++- +-.-.+.++|.++..|
T Consensus 219 l~krkTilFiDEiHRFNks-----QQD~fLP~VE~G~I~lIGATTENP 261 (554)
T KOG2028|consen 219 LTKRKTILFIDEIHRFNKS-----QQDTFLPHVENGDITLIGATTENP 261 (554)
T ss_pred hhcceeEEEeHHhhhhhhh-----hhhcccceeccCceEEEecccCCC
Confidence 1133468999999998532 1233322 2344566677665443
No 427
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.92 E-value=1.1 Score=45.68 Aligned_cols=80 Identities=19% Similarity=0.177 Sum_probs=44.2
Q ss_pred CCceEEEEccCCccHHHHHH--H--HHHc-C-CC-EEEEcc-HHHHHHHHHHHHH-hcCCceeEeeCCeecccCCCceEE
Q 010836 76 VRKVILHVGPTNSGKTHQAL--S--RLES-S-SS-GIYCGP-LRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRA 146 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l--~--~l~~-~-~~-~l~l~P-~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv 146 (499)
++..+.++||||+|||+... . .+.. + .+ +++... .|.-+.++...+. .+|+++.........
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl--------- 260 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADL--------- 260 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHH---------
Confidence 47789999999999999963 1 2222 2 23 344433 3444555554444 346555432211100
Q ss_pred EceeeccccCCccEEEEecC
Q 010836 147 VTVEMADVVSDYDCAVIDEI 166 (499)
Q Consensus 147 ~T~e~~~~l~~~~~iViDEa 166 (499)
...+..+...++++||.+
T Consensus 261 --~~al~~l~~~d~VLIDTa 278 (420)
T PRK14721 261 --QLMLHELRGKHMVLIDTV 278 (420)
T ss_pred --HHHHHHhcCCCEEEecCC
Confidence 011233567899999986
No 428
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=87.92 E-value=1.1 Score=43.06 Aligned_cols=87 Identities=23% Similarity=0.293 Sum_probs=45.7
Q ss_pred CceEEEEccCCccHHHHHH---HHHHc-CCCEEEE--ccHHHHHHHHHHHH-HhcCCceeEeeCCeecccCCCceEEEce
Q 010836 77 RKVILHVGPTNSGKTHQAL---SRLES-SSSGIYC--GPLRLLAWEVAKRL-NKANVSCDLITGQEREEVDGAKHRAVTV 149 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l---~~l~~-~~~~l~l--~P~r~La~q~~~~l-~~~g~~~~~~~g~~~~~~~~~~~iv~T~ 149 (499)
.+.++++||+|+|||+.+. ..+.+ +.+++++ =+.|.-+.++.+.+ ...|+++ +...... +..-+ ..
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~--~~~~~~~---dp~~~--~~ 144 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDV--IKQKEGA---DPAAV--AF 144 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEE--EeCCCCC---CHHHH--HH
Confidence 5788889999999999852 22333 3456555 24566555555444 3445332 2111110 00000 00
Q ss_pred eecc--ccCCccEEEEecCcccC
Q 010836 150 EMAD--VVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 150 e~~~--~l~~~~~iViDEah~~~ 170 (499)
+.+. ...+++++|||=+-...
T Consensus 145 ~~l~~~~~~~~D~ViIDT~G~~~ 167 (272)
T TIGR00064 145 DAIQKAKARNIDVVLIDTAGRLQ 167 (272)
T ss_pred HHHHHHHHCCCCEEEEeCCCCCc
Confidence 1011 13668999999886653
No 429
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=87.83 E-value=0.65 Score=45.08 Aligned_cols=23 Identities=43% Similarity=0.586 Sum_probs=17.7
Q ss_pred CceEEEEccCCccHHHHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALSRLE 99 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~l~ 99 (499)
.+.++|.|||+||||-.++....
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk 25 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAK 25 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHH
Confidence 46789999999999966654433
No 430
>PRK00300 gmk guanylate kinase; Provisional
Probab=87.79 E-value=0.42 Score=43.76 Aligned_cols=19 Identities=26% Similarity=0.462 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.++.+++.||+|||||+.+
T Consensus 4 ~g~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5789999999999999765
No 431
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=87.79 E-value=0.69 Score=45.51 Aligned_cols=33 Identities=18% Similarity=0.231 Sum_probs=26.2
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc----------CCCEEEEc
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLES----------SSSGIYCG 108 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~----------~~~~l~l~ 108 (499)
.+..+.++||+|+|||..+++.+.. +++++|+.
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~ 136 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYID 136 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEE
Confidence 3788899999999999998776643 34778883
No 432
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=87.79 E-value=2.2 Score=46.46 Aligned_cols=80 Identities=10% Similarity=0.141 Sum_probs=61.7
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcC---CCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhh-ccccc-cccEE
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG-MGLNL-NISRI 312 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~---~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~-~Gidi-pv~~V 312 (499)
..++++.. |+.-+.+.++.+++.. +.++..+||+++..+|..+.+...+ |+.+|+|+|..+- ..+.+ .+..|
T Consensus 284 g~qvlilaPT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~--g~~~IiVgT~~ll~~~~~~~~l~lv 361 (630)
T TIGR00643 284 GYQVALMAPTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIAS--GQIHLVVGTHALIQEKVEFKRLALV 361 (630)
T ss_pred CCcEEEECCHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhC--CCCCEEEecHHHHhccccccccceE
Confidence 33555555 8888888888777643 2489999999999999999999998 9999999998543 45677 48888
Q ss_pred EEcccccc
Q 010836 313 IFSTMKKF 320 (499)
Q Consensus 313 I~~~~~~~ 320 (499)
|.....+|
T Consensus 362 VIDEaH~f 369 (630)
T TIGR00643 362 IIDEQHRF 369 (630)
T ss_pred EEechhhc
Confidence 87666543
No 433
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=87.76 E-value=0.82 Score=51.03 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=16.5
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
++..+++.||+|+|||..+
T Consensus 346 ~~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4568999999999999876
No 434
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=87.75 E-value=1.2 Score=44.03 Aligned_cols=88 Identities=22% Similarity=0.223 Sum_probs=47.2
Q ss_pred CCceEEEEccCCccHHHHH--H-HHHH-cCCCEEEE-c-cHHHHHHHHHHHHH-hcCCceeEeeCCeecccCCCceEEEc
Q 010836 76 VRKVILHVGPTNSGKTHQA--L-SRLE-SSSSGIYC-G-PLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRAVT 148 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~--l-~~l~-~~~~~l~l-~-P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv~T 148 (499)
.++.+.++||+|+|||+.+ + ..+. .+++++++ + +.|..+.++...+. ..++++... .... ++..+ .
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~--~~~~---dpa~~--v 185 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQ--KEGA---DPASV--A 185 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEe--CCCC---CHHHH--H
Confidence 4678899999999999995 2 2222 34566655 3 34555544444443 345443221 1000 00000 0
Q ss_pred eeec--cccCCccEEEEecCcccC
Q 010836 149 VEMA--DVVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 149 ~e~~--~~l~~~~~iViDEah~~~ 170 (499)
.+.+ ....++++||||=+-...
T Consensus 186 ~~~l~~~~~~~~D~ViIDTaGr~~ 209 (318)
T PRK10416 186 FDAIQAAKARGIDVLIIDTAGRLH 209 (318)
T ss_pred HHHHHHHHhCCCCEEEEeCCCCCc
Confidence 0111 123778999999987764
No 435
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=87.65 E-value=3 Score=46.26 Aligned_cols=19 Identities=37% Similarity=0.354 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
...++++.||+|+|||..+
T Consensus 202 ~~~n~lL~G~pG~GKT~l~ 220 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIA 220 (731)
T ss_pred CCCceEEECCCCCCHHHHH
Confidence 4678999999999999985
No 436
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=87.63 E-value=1.2 Score=48.19 Aligned_cols=52 Identities=21% Similarity=0.168 Sum_probs=38.4
Q ss_pred CCceEEEEccCCccHHHHH----HHHHHcCCCEEEEccHHH--HHHHHHHHHHhcCCc
Q 010836 76 VRKVILHVGPTNSGKTHQA----LSRLESSSSGIYCGPLRL--LAWEVAKRLNKANVS 127 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~----l~~l~~~~~~l~l~P~r~--La~q~~~~l~~~g~~ 127 (499)
...++++.|+||+|||..+ .+.+..+..++++=|-.. |...+...++..|-.
T Consensus 175 ~~~H~lv~G~TGsGKT~l~~~l~~q~i~~g~~viv~DpKgD~~l~~~~~~~~~~~G~~ 232 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLAELLITQDIRRGDVVIVIDPKGDADLKRRMRAEAKRAGRP 232 (634)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCchHHHHHHHHHHHHhCCC
Confidence 4788999999999999885 345555666677766643 777777777776654
No 437
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=87.59 E-value=0.45 Score=42.43 Aligned_cols=19 Identities=26% Similarity=0.447 Sum_probs=17.0
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
++.++++|+.|||||+.+-
T Consensus 2 ~~~i~l~G~~gsGKst~a~ 20 (175)
T cd00227 2 GRIIILNGGSSAGKSSIAR 20 (175)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 6789999999999999873
No 438
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=87.57 E-value=0.54 Score=51.86 Aligned_cols=17 Identities=41% Similarity=0.604 Sum_probs=15.2
Q ss_pred ceEEEEccCCccHHHHH
Q 010836 78 KVILHVGPTNSGKTHQA 94 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~ 94 (499)
..+++.||||+|||..+
T Consensus 489 ~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 36899999999999987
No 439
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=87.55 E-value=0.87 Score=40.48 Aligned_cols=17 Identities=41% Similarity=0.583 Sum_probs=14.9
Q ss_pred ceEEEEccCCccHHHHH
Q 010836 78 KVILHVGPTNSGKTHQA 94 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~ 94 (499)
.++++.||||+|||..+
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 57899999999999775
No 440
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=87.51 E-value=1.7 Score=43.07 Aligned_cols=19 Identities=32% Similarity=0.342 Sum_probs=16.1
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
.+-.+++||.|.|||..+.
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~ 40 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAE 40 (328)
T ss_pred ceeeeeECCCCCCHHHHHH
Confidence 4568899999999998863
No 441
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=87.49 E-value=0.95 Score=44.14 Aligned_cols=91 Identities=25% Similarity=0.266 Sum_probs=54.5
Q ss_pred CceEEEEccCCccHHHHH---HHHHHcCCCEEEE---ccHHHHHHHHHHHHHh-cCCceeEeeCCeecccCCCceEEEce
Q 010836 77 RKVILHVGPTNSGKTHQA---LSRLESSSSGIYC---GPLRLLAWEVAKRLNK-ANVSCDLITGQEREEVDGAKHRAVTV 149 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~---l~~l~~~~~~l~l---~P~r~La~q~~~~l~~-~g~~~~~~~g~~~~~~~~~~~iv~T~ 149 (499)
...++++|-.|+|||+.. ..++.+.+.-+++ =-.|+-|.++.+.+.+ .|+++ +.+.. ..+.+.+++-+.
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~v--I~~~~--G~DpAaVafDAi 214 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPV--ISGKE--GADPAAVAFDAI 214 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeE--EccCC--CCCcHHHHHHHH
Confidence 567888999999999995 3455555544444 3468888887777764 45444 33321 101111111111
Q ss_pred eeccccCCccEEEEecCcccCCC
Q 010836 150 EMADVVSDYDCAVIDEIQMLGCK 172 (499)
Q Consensus 150 e~~~~l~~~~~iViDEah~~~~~ 172 (499)
+. ..-+++|++++|=|=++...
T Consensus 215 ~~-Akar~~DvvliDTAGRLhnk 236 (340)
T COG0552 215 QA-AKARGIDVVLIDTAGRLHNK 236 (340)
T ss_pred HH-HHHcCCCEEEEeCcccccCc
Confidence 10 12378999999999888653
No 442
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=87.49 E-value=0.67 Score=42.59 Aligned_cols=19 Identities=37% Similarity=0.254 Sum_probs=16.5
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+.+.||+|||||+.+
T Consensus 5 ~g~vi~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVA 23 (207)
T ss_pred CeEEEEEECCCCCCHHHHH
Confidence 4678889999999999875
No 443
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=87.49 E-value=0.31 Score=42.15 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=26.8
Q ss_pred ceEEEEccCCccHHHHHHHHHHcCCCEEEEccHHHHHHHH
Q 010836 78 KVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEV 117 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l~~l~~~~~~l~l~P~r~La~q~ 117 (499)
+-.++.||.|||||+.+...+..-..+++.+..-++|.|+
T Consensus 3 ~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i 42 (187)
T COG4185 3 RLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQI 42 (187)
T ss_pred eEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhc
Confidence 3467889999999999755444433356666665665554
No 444
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.41 E-value=0.31 Score=49.26 Aligned_cols=18 Identities=39% Similarity=0.584 Sum_probs=15.7
Q ss_pred ceEEEEccCCccHHHHHH
Q 010836 78 KVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l 95 (499)
+.++++||.|+|||+.+.
T Consensus 40 ~~~L~~G~~G~GKt~~a~ 57 (367)
T PRK14970 40 QALLFCGPRGVGKTTCAR 57 (367)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 578999999999998863
No 445
>PRK07261 topology modulation protein; Provisional
Probab=87.31 E-value=0.44 Score=42.41 Aligned_cols=18 Identities=33% Similarity=0.359 Sum_probs=15.4
Q ss_pred eEEEEccCCccHHHHHHH
Q 010836 79 VILHVGPTNSGKTHQALS 96 (499)
Q Consensus 79 ~vli~apTGsGKT~~~l~ 96 (499)
.++++|++|||||+.+-.
T Consensus 2 ri~i~G~~GsGKSTla~~ 19 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARK 19 (171)
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 478999999999998743
No 446
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=87.26 E-value=0.54 Score=47.31 Aligned_cols=19 Identities=37% Similarity=0.361 Sum_probs=16.4
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..++++||||||||+..
T Consensus 148 ~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA 166 (372)
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 4567899999999999884
No 447
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=87.22 E-value=1.8 Score=41.59 Aligned_cols=32 Identities=16% Similarity=-0.021 Sum_probs=24.5
Q ss_pred CCceEEEEccCCccHHHHHHHHH----Hc-CCCEEEE
Q 010836 76 VRKVILHVGPTNSGKTHQALSRL----ES-SSSGIYC 107 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l----~~-~~~~l~l 107 (499)
.+..+++.|+||+|||..+.+.+ .. +.+++|+
T Consensus 29 ~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~i 65 (271)
T cd01122 29 KGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTI 65 (271)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEE
Confidence 47899999999999999875543 33 4467777
No 448
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=87.16 E-value=0.62 Score=41.67 Aligned_cols=24 Identities=38% Similarity=0.523 Sum_probs=17.5
Q ss_pred CceEEEEccCCccHHHHHHHHHHc
Q 010836 77 RKVILHVGPTNSGKTHQALSRLES 100 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~l~~ 100 (499)
+..+++.||.|||||..+.+....
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~ 26 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNG 26 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHS
T ss_pred CceEEEEcCCCCCHHHHHHHHhcC
Confidence 678999999999999887665553
No 449
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=87.10 E-value=0.86 Score=39.37 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=22.7
Q ss_pred cCCceEEEEccCCccHHHHHHHHHHcC
Q 010836 75 KVRKVILHVGPTNSGKTHQALSRLESS 101 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l~~l~~~ 101 (499)
..++-+++.||.|+|||+.++..+..+
T Consensus 12 ~~g~gvLi~G~sG~GKStlal~L~~~g 38 (149)
T cd01918 12 VGGIGVLITGPSGIGKSELALELIKRG 38 (149)
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 358899999999999999998776653
No 450
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=87.07 E-value=0.64 Score=47.29 Aligned_cols=44 Identities=23% Similarity=0.285 Sum_probs=27.6
Q ss_pred cCCceEEEEccCCccHHHHHH---HHH-HcCCCEEEEccHHHHHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQAL---SRL-ESSSSGIYCGPLRLLAWEVA 118 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l---~~l-~~~~~~l~l~P~r~La~q~~ 118 (499)
...+++++.|.||||||.+.- ..+ .++.++|+.=|.-+.....+
T Consensus 13 ~e~~~~li~G~~GsGKT~~i~~ll~~~~~~g~~~iI~D~kg~~~~~f~ 60 (386)
T PF10412_consen 13 SENRHILIIGATGSGKTQAIRHLLDQIRARGDRAIIYDPKGEFTERFY 60 (386)
T ss_dssp GGGG-EEEEE-TTSSHHHHHHHHHHHHHHTT-EEEEEEETTHHHHHH-
T ss_pred hhhCcEEEECCCCCCHHHHHHHHHHHHHHcCCEEEEEECCchHHHHhc
Confidence 558999999999999998642 222 34456677777766654433
No 451
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=87.07 E-value=0.47 Score=42.77 Aligned_cols=18 Identities=39% Similarity=0.595 Sum_probs=16.1
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
+..++++||+|||||+.+
T Consensus 2 g~~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLL 19 (186)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 568999999999999885
No 452
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=87.04 E-value=0.78 Score=42.82 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=16.4
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
++++.|.|-||||||..+
T Consensus 23 ~~H~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 23 NRHIAIFGTTGSGKSNTV 40 (229)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 678999999999999885
No 453
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=87.02 E-value=1.3 Score=39.30 Aligned_cols=29 Identities=34% Similarity=0.386 Sum_probs=20.0
Q ss_pred eEEEEccCCccHHHHHHH---HHHc-CCCEEEE
Q 010836 79 VILHVGPTNSGKTHQALS---RLES-SSSGIYC 107 (499)
Q Consensus 79 ~vli~apTGsGKT~~~l~---~l~~-~~~~l~l 107 (499)
.+++.|++|+|||+.+.. .+.+ +.+++++
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i 34 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLV 34 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 468899999999999632 2333 3456555
No 454
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=86.96 E-value=1.3 Score=49.26 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=16.5
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
++..+++.||+|+|||..+
T Consensus 348 ~g~~i~l~GppG~GKTtl~ 366 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLG 366 (784)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4678999999999999765
No 455
>PRK00131 aroK shikimate kinase; Reviewed
Probab=86.90 E-value=0.52 Score=41.67 Aligned_cols=20 Identities=20% Similarity=0.212 Sum_probs=17.5
Q ss_pred CCceEEEEccCCccHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l 95 (499)
++..+++.|++|||||+++-
T Consensus 3 ~~~~i~l~G~~GsGKstla~ 22 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGR 22 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHH
Confidence 46789999999999999973
No 456
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=86.88 E-value=0.4 Score=49.76 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=16.1
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
.+..+++||.|+|||+.+.
T Consensus 39 ~ha~Lf~Gp~G~GKtt~A~ 57 (451)
T PRK06305 39 AHAYLFSGIRGTGKTTLAR 57 (451)
T ss_pred ceEEEEEcCCCCCHHHHHH
Confidence 3568899999999999973
No 457
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=86.76 E-value=1.9 Score=46.08 Aligned_cols=94 Identities=14% Similarity=0.180 Sum_probs=59.5
Q ss_pred CceEEEEccCCccHHHHHHHHHH-----cCCCEEEEccHHHHHHHHH-HHHHhc--CCce--eEeeC------Cee---c
Q 010836 77 RKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLAWEVA-KRLNKA--NVSC--DLITG------QER---E 137 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~l~-----~~~~~l~l~P~r~La~q~~-~~l~~~--g~~~--~~~~g------~~~---~ 137 (499)
-+.|++..++-+|||.+.+.++. .-..++++.||..+|.... .++..+ ..++ ..+.. ... .
T Consensus 33 v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~l~~~~~~~~~~~~~~t~~~k 112 (557)
T PF05876_consen 33 VREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIRASPVLRRKLSPSKSRDSGNTILYK 112 (557)
T ss_pred ccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCHHHHHHhCchhhcccCCchhhe
Confidence 36889999999999998766653 2357899999999999986 556532 1111 11111 111 1
Q ss_pred ccCCCceEEEceeecccc--CCccEEEEecCcccC
Q 010836 138 EVDGAKHRAVTVEMADVV--SDYDCAVIDEIQMLG 170 (499)
Q Consensus 138 ~~~~~~~iv~T~e~~~~l--~~~~~iViDEah~~~ 170 (499)
...+..+.+++......+ ..++++++||++.+.
T Consensus 113 ~f~gg~l~~~ga~S~~~l~s~~~r~~~~DEvD~~p 147 (557)
T PF05876_consen 113 RFPGGFLYLVGANSPSNLRSRPARYLLLDEVDRYP 147 (557)
T ss_pred ecCCCEEEEEeCCCCcccccCCcCEEEEechhhcc
Confidence 111344444444333333 668999999999984
No 458
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=86.74 E-value=0.81 Score=44.25 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=17.0
Q ss_pred EEEEccCCccHHHHHHHHHHc
Q 010836 80 ILHVGPTNSGKTHQALSRLES 100 (499)
Q Consensus 80 vli~apTGsGKT~~~l~~l~~ 100 (499)
++++||||||||..+......
T Consensus 2 i~i~G~t~~GKs~la~~l~~~ 22 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKK 22 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999887665443
No 459
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=86.70 E-value=0.49 Score=42.37 Aligned_cols=17 Identities=41% Similarity=0.610 Sum_probs=15.0
Q ss_pred eEEEEccCCccHHHHHH
Q 010836 79 VILHVGPTNSGKTHQAL 95 (499)
Q Consensus 79 ~vli~apTGsGKT~~~l 95 (499)
.+++.||+|||||++|-
T Consensus 2 riiilG~pGaGK~T~A~ 18 (178)
T COG0563 2 RILILGPPGAGKSTLAK 18 (178)
T ss_pred eEEEECCCCCCHHHHHH
Confidence 58999999999999873
No 460
>CHL00095 clpC Clp protease ATP binding subunit
Probab=86.69 E-value=0.91 Score=51.03 Aligned_cols=19 Identities=26% Similarity=0.358 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
...+++++||+|+|||..+
T Consensus 199 ~~~n~lL~G~pGvGKTal~ 217 (821)
T CHL00095 199 TKNNPILIGEPGVGKTAIA 217 (821)
T ss_pred ccCCeEEECCCCCCHHHHH
Confidence 4678999999999999886
No 461
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=86.69 E-value=0.51 Score=42.17 Aligned_cols=17 Identities=35% Similarity=0.663 Sum_probs=15.2
Q ss_pred ceEEEEccCCccHHHHH
Q 010836 78 KVILHVGPTNSGKTHQA 94 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~ 94 (499)
+.+++.||+|||||+.+
T Consensus 2 ~~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLL 18 (179)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 56899999999999886
No 462
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=86.59 E-value=0.61 Score=39.76 Aligned_cols=17 Identities=29% Similarity=0.470 Sum_probs=13.9
Q ss_pred EEEEccCCccHHHHHHH
Q 010836 80 ILHVGPTNSGKTHQALS 96 (499)
Q Consensus 80 vli~apTGsGKT~~~l~ 96 (499)
++++||||||||+.+-.
T Consensus 2 i~i~GpsGsGKstl~~~ 18 (137)
T cd00071 2 IVLSGPSGVGKSTLLKR 18 (137)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 67899999999976533
No 463
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=86.50 E-value=2 Score=44.17 Aligned_cols=87 Identities=22% Similarity=0.195 Sum_probs=46.3
Q ss_pred CceEEEEccCCccHHHHHH---HHHH--cCCCEEEE--ccHHHHHHHHHHHHH-hcCCceeEeeCCeecccCCCceEEEc
Q 010836 77 RKVILHVGPTNSGKTHQAL---SRLE--SSSSGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRAVT 148 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l---~~l~--~~~~~l~l--~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv~T 148 (499)
...++++|++|+|||+.+. ..+. .+.+++++ =+.|..+.++.+.+. ..|+++...... ..+.-+ .
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~------~~P~~i-~ 171 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKG------QSPVEI-A 171 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCC------CCHHHH-H
Confidence 4678999999999999962 2332 34456555 345555555555543 455554321110 000000 0
Q ss_pred eeeccc--cCCccEEEEecCcccC
Q 010836 149 VEMADV--VSDYDCAVIDEIQMLG 170 (499)
Q Consensus 149 ~e~~~~--l~~~~~iViDEah~~~ 170 (499)
.+.+.. ...+++||||=+-...
T Consensus 172 ~~al~~~~~~~~DvVIIDTaGr~~ 195 (428)
T TIGR00959 172 RRALEYAKENGFDVVIVDTAGRLQ 195 (428)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccc
Confidence 111111 2567888888776543
No 464
>PHA02533 17 large terminase protein; Provisional
Probab=86.48 E-value=4.5 Score=42.90 Aligned_cols=108 Identities=14% Similarity=0.035 Sum_probs=63.0
Q ss_pred CCCchhc-cchHHHhcCCceEEEEccCCccHHHHHH-----HHHH-cCCCEEEEccHHHHHHHHHHHHHhc--CC----c
Q 010836 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL-----SRLE-SSSSGIYCGPLRLLAWEVAKRLNKA--NV----S 127 (499)
Q Consensus 61 ~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l-----~~l~-~~~~~l~l~P~r~La~q~~~~l~~~--g~----~ 127 (499)
.|.+.|. .+..+ ..++-.++.-+=..|||+.+. ..+. .+..+++++|++.-|..++++++.. .. .
T Consensus 59 ~L~p~Q~~i~~~~--~~~R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l~~ 136 (534)
T PHA02533 59 QMRDYQKDMLKIM--HKNRFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPDFLQ 136 (534)
T ss_pred CCcHHHHHHHHHH--hcCeEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHHhh
Confidence 4677888 55443 235556788888899999953 1222 3346778899999999998888732 11 1
Q ss_pred eeEe-eCCeec-ccCCCceEEEceeeccc--cCCccEEEEecCcccCC
Q 010836 128 CDLI-TGQERE-EVDGAKHRAVTVEMADV--VSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 128 ~~~~-~g~~~~-~~~~~~~iv~T~e~~~~--l~~~~~iViDEah~~~~ 171 (499)
..+. ...... ...++.+.+.|... +. -.+..++|+||+|...+
T Consensus 137 ~~i~~~~~~~I~l~NGS~I~~lss~~-~t~rG~~~~~liiDE~a~~~~ 183 (534)
T PHA02533 137 PGIVEWNKGSIELENGSKIGAYASSP-DAVRGNSFAMIYIDECAFIPN 183 (534)
T ss_pred cceeecCccEEEeCCCCEEEEEeCCC-CccCCCCCceEEEeccccCCC
Confidence 1111 111111 12334444444322 21 23567899999998764
No 465
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=86.45 E-value=3.7 Score=40.47 Aligned_cols=18 Identities=39% Similarity=0.519 Sum_probs=15.7
Q ss_pred ceEEEEccCCccHHHHHH
Q 010836 78 KVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l 95 (499)
+-.++.||.|.||+..+.
T Consensus 27 HA~Lf~Gp~G~GK~~lA~ 44 (319)
T PRK08769 27 HGLLICGPEGLGKRAVAL 44 (319)
T ss_pred eeEeeECCCCCCHHHHHH
Confidence 468999999999999973
No 466
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=86.45 E-value=1 Score=42.30 Aligned_cols=38 Identities=24% Similarity=0.232 Sum_probs=28.5
Q ss_pred CceEEEEccCCccHHHHHHHHHHcCCCEEEEccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLA 114 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~l~~~~~~l~l~P~r~La 114 (499)
.++|+..||+|+|||..|-....+.+..++.+-.-+|.
T Consensus 151 PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~li 188 (368)
T COG1223 151 PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELI 188 (368)
T ss_pred cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHH
Confidence 68999999999999988755555556667766555553
No 467
>PRK05541 adenylylsulfate kinase; Provisional
Probab=86.43 E-value=1.2 Score=39.66 Aligned_cols=19 Identities=42% Similarity=0.338 Sum_probs=17.2
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
++..+++.|+.|||||+.+
T Consensus 6 ~~~~I~i~G~~GsGKst~a 24 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIA 24 (176)
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4678999999999999997
No 468
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=86.39 E-value=1.2 Score=49.98 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=16.8
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
...+++++||.|+|||..+
T Consensus 207 ~~~n~lLvG~pGvGKTal~ 225 (852)
T TIGR03345 207 RQNNPILTGEAGVGKTAVV 225 (852)
T ss_pred CcCceeEECCCCCCHHHHH
Confidence 4578999999999999885
No 469
>PLN02748 tRNA dimethylallyltransferase
Probab=86.36 E-value=0.85 Score=47.18 Aligned_cols=24 Identities=38% Similarity=0.537 Sum_probs=19.2
Q ss_pred cCCceEEEEccCCccHHHHHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQALSRL 98 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l~~l 98 (499)
..++.++|.||||||||..++...
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la 43 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLA 43 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999998875433
No 470
>PRK14737 gmk guanylate kinase; Provisional
Probab=86.31 E-value=0.79 Score=41.39 Aligned_cols=21 Identities=14% Similarity=0.185 Sum_probs=17.3
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~ 96 (499)
.++.++++||+|||||.++=.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~ 23 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQA 23 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 467899999999999977533
No 471
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=86.28 E-value=0.91 Score=44.83 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=26.2
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc----------CCCEEEEc
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLES----------SSSGIYCG 108 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~----------~~~~l~l~ 108 (499)
.+..+.++||+|+|||..+++.+.. +++++|+.
T Consensus 101 ~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~ 143 (317)
T PRK04301 101 TQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYID 143 (317)
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEe
Confidence 3789999999999999998777643 24678883
No 472
>CHL00095 clpC Clp protease ATP binding subunit
Probab=86.28 E-value=1 Score=50.65 Aligned_cols=16 Identities=44% Similarity=0.640 Sum_probs=14.4
Q ss_pred eEEEEccCCccHHHHH
Q 010836 79 VILHVGPTNSGKTHQA 94 (499)
Q Consensus 79 ~vli~apTGsGKT~~~ 94 (499)
.+++.||||+|||..+
T Consensus 541 ~~lf~Gp~GvGKt~lA 556 (821)
T CHL00095 541 SFLFSGPTGVGKTELT 556 (821)
T ss_pred EEEEECCCCCcHHHHH
Confidence 5789999999999886
No 473
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=86.26 E-value=1.9 Score=41.33 Aligned_cols=86 Identities=13% Similarity=0.089 Sum_probs=45.8
Q ss_pred CCceEEEEccCCccHHHHHH---HHHHc-CCCEEEE-c-cHH-HHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEc
Q 010836 76 VRKVILHVGPTNSGKTHQAL---SRLES-SSSGIYC-G-PLR-LLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVT 148 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l---~~l~~-~~~~l~l-~-P~r-~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T 148 (499)
++..+.+.||+|+|||+.+. ..+.. +.++.++ . +.| ..+.|+.......++++....... .+.-.
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~--------~l~~~ 145 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEA--------AMTRA 145 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHH--------HHHHH
Confidence 45789999999999999852 22222 3344444 2 333 455666555555554443211100 00000
Q ss_pred eeeccccCCccEEEEecCccc
Q 010836 149 VEMADVVSDYDCAVIDEIQML 169 (499)
Q Consensus 149 ~e~~~~l~~~~~iViDEah~~ 169 (499)
-+.+....++++++||-+=..
T Consensus 146 l~~l~~~~~~D~ViIDt~Gr~ 166 (270)
T PRK06731 146 LTYFKEEARVDYILIDTAGKN 166 (270)
T ss_pred HHHHHhcCCCCEEEEECCCCC
Confidence 011112246899999999665
No 474
>PHA00012 I assembly protein
Probab=86.24 E-value=6.4 Score=38.54 Aligned_cols=20 Identities=40% Similarity=0.526 Sum_probs=16.4
Q ss_pred eEEEEccCCccHHHHHHHHH
Q 010836 79 VILHVGPTNSGKTHQALSRL 98 (499)
Q Consensus 79 ~vli~apTGsGKT~~~l~~l 98 (499)
..++.|-.|||||+.+...+
T Consensus 3 iylITGkPGSGKSl~aV~~I 22 (361)
T PHA00012 3 VYVVTGKLGAGKTLVAVSRI 22 (361)
T ss_pred eEEEecCCCCCchHHHHHHH
Confidence 45899999999999986544
No 475
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=86.21 E-value=1.1 Score=50.41 Aligned_cols=31 Identities=35% Similarity=0.454 Sum_probs=20.8
Q ss_pred eEEEEccCCccHHHHH--HH-HHHcCCCEEEEcc
Q 010836 79 VILHVGPTNSGKTHQA--LS-RLESSSSGIYCGP 109 (499)
Q Consensus 79 ~vli~apTGsGKT~~~--l~-~l~~~~~~l~l~P 109 (499)
.+++.||||+|||..+ +. .+..+...++...
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~d 631 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLYGGEQNLITIN 631 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEe
Confidence 5899999999999996 33 3443344444443
No 476
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=86.20 E-value=0.49 Score=45.29 Aligned_cols=18 Identities=28% Similarity=0.335 Sum_probs=16.2
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
..++++.||+|+|||+.+
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 467899999999999996
No 477
>PRK06762 hypothetical protein; Provisional
Probab=86.11 E-value=1.4 Score=38.72 Aligned_cols=19 Identities=37% Similarity=0.438 Sum_probs=16.2
Q ss_pred ceEEEEccCCccHHHHHHH
Q 010836 78 KVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l~ 96 (499)
..++++|+.|||||+.+-.
T Consensus 3 ~li~i~G~~GsGKST~A~~ 21 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQ 21 (166)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 5688999999999999743
No 478
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=86.09 E-value=2 Score=43.29 Aligned_cols=20 Identities=30% Similarity=0.235 Sum_probs=17.7
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..|+..+|.||.|+|||+.+
T Consensus 167 GkGQR~lIvgppGvGKTTLa 186 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLL 186 (416)
T ss_pred ccCceEEEeCCCCCChhHHH
Confidence 46899999999999999765
No 479
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=86.08 E-value=1.3 Score=46.86 Aligned_cols=51 Identities=16% Similarity=0.105 Sum_probs=37.3
Q ss_pred CceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHhcCCce
Q 010836 77 RKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~l----~~~~~~l~l~P~r~La~q~~~~l~~~g~~~ 128 (499)
+..+++.|++|+|||..+.+.+ ..+.+++|+.- -+-..++.+++..+|...
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~-e~~~~~i~~~~~~~g~~~ 327 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAF-EESRAQLIRNARSWGIDL 327 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe-cCCHHHHHHHHHHcCCCh
Confidence 7889999999999999986655 34567788743 334667777777776543
No 480
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=85.97 E-value=0.92 Score=43.45 Aligned_cols=20 Identities=30% Similarity=0.396 Sum_probs=18.0
Q ss_pred CCceEEEEccCCccHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l 95 (499)
.++.+++.||+|+|||..+.
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~ 39 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAM 39 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHH
Confidence 48899999999999999974
No 481
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=85.95 E-value=0.57 Score=42.80 Aligned_cols=20 Identities=30% Similarity=0.591 Sum_probs=17.5
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
.++..++++||.|||||+..
T Consensus 26 ~~Gevv~iiGpSGSGKSTlL 45 (240)
T COG1126 26 EKGEVVVIIGPSGSGKSTLL 45 (240)
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35899999999999999863
No 482
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=85.79 E-value=0.61 Score=46.45 Aligned_cols=39 Identities=26% Similarity=0.193 Sum_probs=26.5
Q ss_pred cCCceEEEEccCCccHHHHH--HH-HHHcCCCEEEEccHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA--LS-RLESSSSGIYCGPLRLL 113 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~--l~-~l~~~~~~l~l~P~r~L 113 (499)
..+++++++|+||||||+.. +. .+....+.+++--+.||
T Consensus 176 ~~~~~ili~G~tGsGKTTll~al~~~i~~~~riv~iEd~~El 217 (340)
T TIGR03819 176 AARLAFLISGGTGSGKTTLLSALLALVAPDERIVLVEDAAEL 217 (340)
T ss_pred hCCCeEEEECCCCCCHHHHHHHHHccCCCCCcEEEECCccee
Confidence 35789999999999999874 22 22334455666555555
No 483
>PLN02840 tRNA dimethylallyltransferase
Probab=85.75 E-value=0.89 Score=46.23 Aligned_cols=22 Identities=50% Similarity=0.700 Sum_probs=17.9
Q ss_pred cCCceEEEEccCCccHHHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l~ 96 (499)
..+..+++.||||||||..+..
T Consensus 19 ~~~~vi~I~GptgsGKTtla~~ 40 (421)
T PLN02840 19 KKEKVIVISGPTGAGKSRLALE 40 (421)
T ss_pred cCCeEEEEECCCCCCHHHHHHH
Confidence 3467799999999999977654
No 484
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=85.75 E-value=0.59 Score=45.36 Aligned_cols=18 Identities=28% Similarity=0.309 Sum_probs=16.3
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
+.++++.||+|+|||+.|
T Consensus 58 ~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 458999999999999987
No 485
>PRK14531 adenylate kinase; Provisional
Probab=85.70 E-value=0.61 Score=41.95 Aligned_cols=20 Identities=35% Similarity=0.562 Sum_probs=16.6
Q ss_pred ceEEEEccCCccHHHHHHHH
Q 010836 78 KVILHVGPTNSGKTHQALSR 97 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l~~ 97 (499)
+.+++.||+|||||+++-..
T Consensus 3 ~~i~i~G~pGsGKsT~~~~l 22 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARL 22 (183)
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46899999999999996433
No 486
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=85.68 E-value=4 Score=39.89 Aligned_cols=19 Identities=32% Similarity=0.506 Sum_probs=17.2
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
....+++.||-|||||...
T Consensus 48 EsnsviiigprgsgkT~li 66 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILI 66 (408)
T ss_pred CCCceEEEccCCCCceEee
Confidence 5788999999999999884
No 487
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=85.45 E-value=1.3 Score=35.88 Aligned_cols=21 Identities=33% Similarity=0.367 Sum_probs=18.0
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~ 96 (499)
.++.+.+.||+|||||+.+..
T Consensus 14 ~ge~v~I~GpSGsGKSTLl~~ 34 (107)
T cd00820 14 GKVGVLITGDSGIGKTELALE 34 (107)
T ss_pred CCEEEEEEcCCCCCHHHHHHH
Confidence 468899999999999998644
No 488
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=85.41 E-value=3.5 Score=41.51 Aligned_cols=19 Identities=32% Similarity=0.382 Sum_probs=16.2
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
.+-.++.||.|+||+..+.
T Consensus 41 ~HA~Lf~Gp~G~GK~~lA~ 59 (365)
T PRK07471 41 HHAWLIGGPQGIGKATLAY 59 (365)
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4568999999999999973
No 489
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=85.39 E-value=1.4 Score=47.86 Aligned_cols=54 Identities=20% Similarity=0.014 Sum_probs=41.6
Q ss_pred CCceEEEEccCCccHHHHH-HHHH-HcCCCEEEEccHHHHHHHHHHHHHhcCCceeE
Q 010836 76 VRKVILHVGPTNSGKTHQA-LSRL-ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDL 130 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~-l~~l-~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~ 130 (499)
...++++.||||||||..+ +..| .-.+++||+=|--++....+...++.| +|-+
T Consensus 143 g~~hvLviApTrSGKgvg~VIPnLL~~~~S~VV~D~KGEl~~~Ta~~R~~~G-~V~~ 198 (663)
T PRK13876 143 GPEHVLCFAPTRSGKGVGLVVPTLLTWPGSAIVHDIKGENWQLTAGFRARFG-RVLL 198 (663)
T ss_pred CCceEEEEecCCCCcceeEehhhHHhCCCCEEEEeCcchHHHHHHHHHHhCC-eEEE
Confidence 4689999999999999974 3344 446788999999999888877766666 4433
No 490
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=85.24 E-value=1.2 Score=51.71 Aligned_cols=48 Identities=19% Similarity=0.156 Sum_probs=39.9
Q ss_pred CCceEEEEccCCccHHHHH----HHHHHcCC-----CEEEEccHHHHHHHHHHHHHh
Q 010836 76 VRKVILHVGPTNSGKTHQA----LSRLESSS-----SGIYCGPLRLLAWEVAKRLNK 123 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~----l~~l~~~~-----~~l~l~P~r~La~q~~~~l~~ 123 (499)
.+++++|.|-.|||||.+. +..|+.++ ..+++..|+..+.++..|+.+
T Consensus 15 ~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~ 71 (1139)
T COG1074 15 PGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRD 71 (1139)
T ss_pred CCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHH
Confidence 4779999999999999994 56666642 569999999999999988874
No 491
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=85.20 E-value=6.2 Score=42.97 Aligned_cols=125 Identities=14% Similarity=0.159 Sum_probs=0.0
Q ss_pred EEEccCCccHHHHHHHHHH-------------cCCCEEEEccHHHHHHHHHHHHHhc----CCceeEeeC--CeecccCC
Q 010836 81 LHVGPTNSGKTHQALSRLE-------------SSSSGIYCGPLRLLAWEVAKRLNKA----NVSCDLITG--QEREEVDG 141 (499)
Q Consensus 81 li~apTGsGKT~~~l~~l~-------------~~~~~l~l~P~r~La~q~~~~l~~~----g~~~~~~~g--~~~~~~~~ 141 (499)
|+.-.-|-|||...+..++ ..+..++++|+ ++..|+...+.+. ...+.+.+| ........
T Consensus 156 Iladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~-s~~~qW~~elek~~~~~~l~v~v~~gr~kd~~el~~ 234 (674)
T KOG1001|consen 156 ILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPT-SLLTQWKTELEKVTEEDKLSIYVYHGRTKDKSELNS 234 (674)
T ss_pred eEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecch-HHHHHHHHHHhccCCccceEEEEecccccccchhcC
Q ss_pred CceEEEceeecc----ccCCccEEEEecCcccCCCCCChhHHHHHhccccccceEeecCCCchHHHHHHHH
Q 010836 142 AKHRAVTVEMAD----VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQV 208 (499)
Q Consensus 142 ~~~iv~T~e~~~----~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~ 208 (499)
..++++|+.++. ..-.+-.+|+||+|.+. .+......+...+.+..--.+..+..-....++...
T Consensus 235 ~dVVltTy~il~~~~l~~i~w~Riildea~~ik--n~~tq~~~a~~~L~a~~RWcLtgtPiqn~~~~lysl 303 (674)
T KOG1001|consen 235 YDVVLTTYDILKNSPLVKIKWLRIVLDEAHTIK--NKDTQIFKAVCQLDAKYRWCLTGTPIQNNLDELYSL 303 (674)
T ss_pred CceEEeeHHHhhcccccceeEEEEEeccccccC--CcchHhhhhheeeccceeeeecCChhhhhHHHHHHH
No 492
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=85.06 E-value=0.65 Score=43.02 Aligned_cols=19 Identities=32% Similarity=0.569 Sum_probs=17.3
Q ss_pred cCCceEEEEccCCccHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQ 93 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~ 93 (499)
..+..+.|.||+|||||+.
T Consensus 29 ~~Ge~vaI~GpSGSGKSTL 47 (226)
T COG1136 29 EAGEFVAIVGPSGSGKSTL 47 (226)
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3589999999999999987
No 493
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=84.97 E-value=1.3 Score=41.53 Aligned_cols=33 Identities=18% Similarity=0.216 Sum_probs=25.6
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc----------CCCEEEEc
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLES----------SSSGIYCG 108 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~----------~~~~l~l~ 108 (499)
.+..+.+.||+|||||..+++.+.. +..++|+.
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~ 60 (235)
T cd01123 18 TGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYID 60 (235)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEe
Confidence 4889999999999999998766532 25677773
No 494
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=84.93 E-value=0.97 Score=39.62 Aligned_cols=16 Identities=31% Similarity=0.416 Sum_probs=13.5
Q ss_pred EEEEccCCccHHHHHH
Q 010836 80 ILHVGPTNSGKTHQAL 95 (499)
Q Consensus 80 vli~apTGsGKT~~~l 95 (499)
++++||+|||||+.+-
T Consensus 1 i~l~G~~GsGKSTla~ 16 (163)
T TIGR01313 1 FVLMGVAGSGKSTIAS 16 (163)
T ss_pred CEEECCCCCCHHHHHH
Confidence 4689999999998863
No 495
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=84.91 E-value=2.4 Score=47.11 Aligned_cols=61 Identities=23% Similarity=0.243 Sum_probs=0.0
Q ss_pred CceEEEEccCCccHHHHHHHHHHcCCCEEEEccHHHH-----------HHHHHHHHHhcCCceeEeeCCeecccCCCceE
Q 010836 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLL-----------AWEVAKRLNKANVSCDLITGQEREEVDGAKHR 145 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~l~~~~~~l~l~P~r~L-----------a~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~i 145 (499)
.+.+++.||+|+|||+.+-......+..++.+-.-++ ..++++..++.
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~~~--------------------- 545 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKARQA--------------------- 545 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHHhc---------------------
Q ss_pred EEceeeccccCCccEEEEecCccc
Q 010836 146 AVTVEMADVVSDYDCAVIDEIQML 169 (499)
Q Consensus 146 v~T~e~~~~l~~~~~iViDEah~~ 169 (499)
...+++|||+|.+
T Consensus 546 -----------~p~iifiDEid~l 558 (733)
T TIGR01243 546 -----------APAIIFFDEIDAI 558 (733)
T ss_pred -----------CCEEEEEEChhhh
No 496
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=84.87 E-value=0.77 Score=41.05 Aligned_cols=19 Identities=21% Similarity=0.317 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+++.|++|||||+.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~ 20 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIG 20 (176)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4788999999999999875
No 497
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=84.86 E-value=0.87 Score=48.64 Aligned_cols=36 Identities=25% Similarity=0.191 Sum_probs=24.5
Q ss_pred cCCceEEEEccCCccHHHHHHHHH---H-cCCCEEEEccH
Q 010836 75 KVRKVILHVGPTNSGKTHQALSRL---E-SSSSGIYCGPL 110 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l~~l---~-~~~~~l~l~P~ 110 (499)
...+++++.|+||||||......+ . ++.+++++=|.
T Consensus 174 ~e~~h~li~G~tGsGKs~~i~~ll~~~~~~g~~~ii~D~~ 213 (566)
T TIGR02759 174 SETQHILIHGTTGSGKSVAIRKLLRWIRQRGDRAIIYDKG 213 (566)
T ss_pred ccccceEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 457899999999999997753322 2 23455665554
No 498
>CHL00181 cbbX CbbX; Provisional
Probab=84.73 E-value=0.71 Score=44.86 Aligned_cols=18 Identities=28% Similarity=0.318 Sum_probs=16.3
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
+.++++.||+|+|||+.|
T Consensus 59 ~~~ill~G~pGtGKT~lA 76 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVA 76 (287)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 567999999999999997
No 499
>PRK14527 adenylate kinase; Provisional
Probab=84.55 E-value=0.77 Score=41.57 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=18.4
Q ss_pred CCceEEEEccCCccHHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALSR 97 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~ 97 (499)
+++.+++.||+|||||+++-..
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~L 26 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERL 26 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 4678999999999999987443
No 500
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=84.51 E-value=0.85 Score=41.60 Aligned_cols=25 Identities=36% Similarity=0.472 Sum_probs=17.5
Q ss_pred cCCceEEEEccCCccHHHHH--HHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA--LSRLE 99 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~--l~~l~ 99 (499)
..++++++.||.|+|||..+ +..|+
T Consensus 20 aG~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 20 AGGHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp HCC--EEEES-CCCTHHHHHHHHHHCS
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHhC
Confidence 36889999999999999996 44443
Done!