Query 010836
Match_columns 499
No_of_seqs 467 out of 3380
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 15:17:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010836.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010836hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rc3_A ATP-dependent RNA helic 100.0 4.3E-60 1.5E-64 505.1 40.4 432 58-490 136-576 (677)
2 2va8_A SSO2462, SKI2-type heli 100.0 3.7E-40 1.3E-44 360.1 26.6 382 41-439 15-511 (715)
3 2db3_A ATP-dependent RNA helic 100.0 6.2E-40 2.1E-44 337.5 26.4 295 40-357 62-405 (434)
4 2zj8_A DNA helicase, putative 100.0 8E-40 2.7E-44 357.4 26.6 383 40-439 7-495 (720)
5 2p6r_A Afuhel308 helicase; pro 100.0 1E-39 3.4E-44 355.7 27.3 383 41-441 10-494 (702)
6 4f92_B U5 small nuclear ribonu 100.0 9.6E-39 3.3E-43 370.8 27.2 325 36-372 61-487 (1724)
7 2v1x_A ATP-dependent DNA helic 100.0 6.3E-38 2.2E-42 332.3 30.5 338 40-407 27-417 (591)
8 1oyw_A RECQ helicase, ATP-depe 100.0 1.6E-38 5.6E-43 333.4 24.7 306 41-369 9-354 (523)
9 2i4i_A ATP-dependent RNA helic 100.0 5.5E-38 1.9E-42 321.4 25.1 298 40-359 21-383 (417)
10 3pey_A ATP-dependent RNA helic 100.0 1.3E-37 4.4E-42 315.9 27.5 305 40-359 11-356 (395)
11 3fht_A ATP-dependent RNA helic 100.0 2.2E-37 7.6E-42 316.2 28.5 320 40-373 31-398 (412)
12 2j0s_A ATP-dependent RNA helic 100.0 4.4E-38 1.5E-42 321.6 22.8 311 40-373 43-401 (410)
13 2xau_A PRE-mRNA-splicing facto 100.0 1.4E-38 4.8E-43 346.5 19.1 390 40-452 78-540 (773)
14 1s2m_A Putative ATP-dependent 100.0 1.9E-37 6.5E-42 315.7 26.0 297 40-359 27-365 (400)
15 3eiq_A Eukaryotic initiation f 100.0 4.5E-38 1.5E-42 321.7 21.4 298 40-360 46-388 (414)
16 1hv8_A Putative ATP-dependent 100.0 4.2E-37 1.4E-41 309.0 26.0 297 40-359 12-345 (367)
17 1xti_A Probable ATP-dependent 100.0 2.1E-37 7.3E-42 314.2 23.4 297 40-359 14-357 (391)
18 3i5x_A ATP-dependent RNA helic 100.0 4.3E-37 1.5E-41 327.2 26.8 309 39-366 77-457 (563)
19 4f92_B U5 small nuclear ribonu 100.0 2.3E-37 8E-42 359.2 26.5 326 37-372 907-1322(1724)
20 2z0m_A 337AA long hypothetical 100.0 3.7E-37 1.3E-41 305.9 23.5 298 41-365 1-329 (337)
21 3sqw_A ATP-dependent RNA helic 100.0 9.9E-37 3.4E-41 325.0 26.7 313 35-366 22-406 (579)
22 2xgj_A ATP-dependent RNA helic 100.0 1E-36 3.5E-41 339.8 27.2 323 57-388 83-529 (1010)
23 3fmp_B ATP-dependent RNA helic 100.0 8.1E-38 2.8E-42 326.2 16.1 305 40-359 98-446 (479)
24 4a4z_A Antiviral helicase SKI2 100.0 2.9E-36 9.8E-41 336.2 26.4 309 57-373 36-509 (997)
25 3l9o_A ATP-dependent RNA helic 100.0 2.3E-37 7.8E-42 347.9 17.6 320 58-386 181-625 (1108)
26 1fuu_A Yeast initiation factor 100.0 2.9E-37 9.8E-42 313.5 11.0 297 40-359 27-366 (394)
27 3fho_A ATP-dependent RNA helic 100.0 5E-36 1.7E-40 314.2 14.9 321 40-375 125-491 (508)
28 3oiy_A Reverse gyrase helicase 100.0 2.5E-34 8.6E-39 294.2 17.5 285 44-357 9-363 (414)
29 2jlq_A Serine protease subunit 100.0 7E-34 2.4E-38 293.3 17.2 283 58-358 1-310 (451)
30 2whx_A Serine protease/ntpase/ 100.0 4.6E-33 1.6E-37 296.0 20.6 281 59-357 169-476 (618)
31 3o8b_A HCV NS3 protease/helica 100.0 7.8E-33 2.7E-37 291.9 19.1 273 63-359 219-514 (666)
32 2ykg_A Probable ATP-dependent 100.0 5.2E-33 1.8E-37 303.1 14.0 283 57-359 9-516 (696)
33 4a2p_A RIG-I, retinoic acid in 100.0 1.5E-32 5E-37 291.6 16.0 282 58-359 4-508 (556)
34 3tbk_A RIG-I helicase domain; 100.0 3.8E-32 1.3E-36 288.2 18.6 280 60-359 3-507 (555)
35 4gl2_A Interferon-induced heli 100.0 2.2E-32 7.7E-37 298.2 16.0 281 60-358 6-519 (699)
36 2wv9_A Flavivirin protease NS2 100.0 4E-32 1.4E-36 290.6 14.7 278 61-356 215-530 (673)
37 2z83_A Helicase/nucleoside tri 100.0 2.8E-32 9.5E-37 281.8 12.6 265 75-358 19-312 (459)
38 1gm5_A RECG; helicase, replica 100.0 4.1E-32 1.4E-36 293.9 12.9 289 43-357 356-695 (780)
39 4a2q_A RIG-I, retinoic acid in 100.0 1.6E-31 5.3E-36 294.8 17.7 283 57-359 244-749 (797)
40 1wp9_A ATP-dependent RNA helic 100.0 4.6E-31 1.6E-35 274.5 19.5 279 60-359 8-475 (494)
41 1yks_A Genome polyprotein [con 100.0 1.2E-31 4E-36 275.6 13.2 263 75-356 6-296 (440)
42 2v6i_A RNA helicase; membrane, 100.0 3.4E-31 1.2E-35 271.5 16.2 265 76-356 1-288 (431)
43 2fwr_A DNA repair protein RAD2 100.0 2E-31 6.7E-36 277.4 14.1 271 61-359 93-454 (472)
44 1gku_B Reverse gyrase, TOP-RG; 100.0 1.5E-30 5.1E-35 292.7 21.3 244 57-318 54-352 (1054)
45 4ddu_A Reverse gyrase; topoiso 100.0 4.2E-31 1.4E-35 297.1 16.5 246 58-319 76-388 (1104)
46 2oca_A DAR protein, ATP-depend 100.0 4E-31 1.4E-35 277.7 15.0 280 59-357 111-456 (510)
47 2eyq_A TRCF, transcription-rep 100.0 8.1E-30 2.8E-34 288.3 23.8 283 57-359 600-922 (1151)
48 4a2w_A RIG-I, retinoic acid in 100.0 1.7E-30 5.9E-35 289.8 17.8 282 58-359 245-749 (936)
49 1tf5_A Preprotein translocase 100.0 1.4E-28 4.6E-33 261.9 16.1 278 57-356 80-542 (844)
50 3h1t_A Type I site-specific re 100.0 7.4E-28 2.5E-32 257.2 17.5 280 60-356 177-558 (590)
51 3dmq_A RNA polymerase-associat 99.9 1.2E-26 4.2E-31 259.0 17.7 286 60-358 152-614 (968)
52 2fsf_A Preprotein translocase 99.9 2.7E-26 9.3E-31 243.6 15.3 107 60-170 73-207 (853)
53 1nkt_A Preprotein translocase 99.9 8.1E-26 2.8E-30 240.2 17.3 279 57-357 108-615 (922)
54 1z63_A Helicase of the SNF2/RA 99.9 5.6E-25 1.9E-29 230.4 18.9 284 60-359 36-453 (500)
55 1z3i_X Similar to RAD54-like; 99.9 5.8E-22 2E-26 212.9 21.5 108 239-359 416-528 (644)
56 3mwy_W Chromo domain-containin 99.9 1.1E-21 3.8E-26 215.8 21.2 285 60-359 235-684 (800)
57 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 6.5E-21 2.2E-25 211.7 19.0 282 60-358 270-708 (1038)
58 1c4o_A DNA nucleotide excision 99.8 1.7E-19 5.7E-24 193.7 24.9 111 239-360 439-551 (664)
59 3jux_A Protein translocase sub 99.8 9.3E-20 3.2E-24 189.9 19.4 102 239-357 474-585 (822)
60 3iuy_A Probable ATP-dependent 99.8 2.4E-20 8.3E-25 174.4 12.7 160 40-207 26-217 (228)
61 2hjv_A ATP-dependent RNA helic 99.8 7.1E-20 2.4E-24 161.9 14.0 110 235-359 31-142 (163)
62 3eaq_A Heat resistant RNA depe 99.8 3E-20 1E-24 171.5 11.5 109 236-359 28-138 (212)
63 3fe2_A Probable ATP-dependent 99.8 5.6E-20 1.9E-24 173.5 12.4 161 40-208 35-227 (242)
64 2rb4_A ATP-dependent RNA helic 99.8 1.6E-19 5.3E-24 161.7 13.7 116 235-359 30-147 (175)
65 1fuk_A Eukaryotic initiation f 99.8 1.9E-19 6.6E-24 159.4 13.3 124 235-373 26-155 (165)
66 1vec_A ATP-dependent RNA helic 99.8 2.5E-19 8.6E-24 164.6 14.1 160 40-207 9-196 (206)
67 2pl3_A Probable ATP-dependent 99.8 2.4E-19 8.1E-24 168.6 14.1 161 40-208 31-222 (236)
68 3ly5_A ATP-dependent RNA helic 99.8 6.2E-20 2.1E-24 175.3 10.2 160 40-207 60-251 (262)
69 3ber_A Probable ATP-dependent 99.8 2E-19 6.9E-24 170.4 12.7 161 40-208 49-237 (249)
70 1t5i_A C_terminal domain of A 99.8 1.4E-19 4.7E-24 161.4 10.7 109 235-358 27-137 (172)
71 3fmo_B ATP-dependent RNA helic 99.8 4.3E-19 1.5E-23 172.7 14.5 163 40-208 98-287 (300)
72 3dkp_A Probable ATP-dependent 99.8 1.6E-19 5.6E-24 170.6 10.5 162 40-208 35-230 (245)
73 2p6n_A ATP-dependent RNA helic 99.8 3E-19 1E-23 161.9 11.5 105 239-358 54-160 (191)
74 2gxq_A Heat resistant RNA depe 99.8 5.5E-19 1.9E-23 162.4 13.3 161 40-208 7-195 (207)
75 1q0u_A Bstdead; DEAD protein, 99.8 2E-19 6.7E-24 167.1 10.3 160 40-207 10-200 (219)
76 2d7d_A Uvrabc system protein B 99.8 2.5E-18 8.6E-23 184.5 19.6 110 239-359 445-556 (661)
77 2oxc_A Probable ATP-dependent 99.8 3.8E-19 1.3E-23 166.5 11.5 159 40-206 30-216 (230)
78 3i32_A Heat resistant RNA depe 99.8 2.6E-19 8.9E-24 173.2 10.6 109 237-360 26-136 (300)
79 1qde_A EIF4A, translation init 99.8 6.7E-19 2.3E-23 164.0 12.7 160 40-207 20-205 (224)
80 3bor_A Human initiation factor 99.8 4.5E-19 1.5E-23 166.8 11.5 160 40-207 36-223 (237)
81 2jgn_A DBX, DDX3, ATP-dependen 99.8 7.1E-19 2.4E-23 158.7 11.0 107 238-359 45-153 (185)
82 1wrb_A DJVLGB; RNA helicase, D 99.8 9.3E-19 3.2E-23 166.3 11.8 162 40-208 29-229 (253)
83 1t6n_A Probable ATP-dependent 99.8 4.4E-19 1.5E-23 164.8 8.9 160 40-207 20-209 (220)
84 2yjt_D ATP-dependent RNA helic 99.6 1E-19 3.6E-24 162.0 0.0 107 238-359 29-137 (170)
85 2ipc_A Preprotein translocase 99.7 1.6E-15 5.4E-20 161.2 18.9 109 57-170 76-215 (997)
86 3b6e_A Interferon-induced heli 99.6 4.8E-16 1.6E-20 143.5 9.2 112 58-171 30-176 (216)
87 2vl7_A XPD; helicase, unknown 99.6 5.8E-16 2E-20 162.8 10.7 75 58-133 5-83 (540)
88 1rif_A DAR protein, DNA helica 99.6 5.6E-15 1.9E-19 142.5 9.3 133 60-199 112-262 (282)
89 3llm_A ATP-dependent RNA helic 99.6 8E-15 2.7E-19 137.4 9.3 145 60-210 60-228 (235)
90 2fz4_A DNA repair protein RAD2 99.5 3.5E-14 1.2E-18 133.1 12.2 108 60-172 92-207 (237)
91 1z5z_A Helicase of the SNF2/RA 99.5 1.1E-13 3.7E-18 132.2 9.3 109 238-359 111-224 (271)
92 3crv_A XPD/RAD3 related DNA he 99.1 8.4E-11 2.9E-15 123.9 6.7 73 61-133 3-83 (551)
93 1w36_D RECD, exodeoxyribonucle 98.2 3.4E-06 1.1E-10 89.5 11.0 59 63-123 151-218 (608)
94 2gk6_A Regulator of nonsense t 98.2 6E-06 2E-10 88.0 11.6 68 59-128 178-251 (624)
95 4b3f_X DNA-binding protein smu 98.2 3.3E-06 1.1E-10 90.5 9.6 68 60-128 188-260 (646)
96 2xzl_A ATP-dependent helicase 98.2 5.2E-06 1.8E-10 90.6 10.8 68 59-128 358-431 (802)
97 3upu_A ATP-dependent DNA helic 98.0 1.6E-05 5.5E-10 81.5 10.9 108 58-170 22-141 (459)
98 4a15_A XPD helicase, ATP-depen 98.0 5.7E-06 1.9E-10 87.9 7.3 109 239-357 448-583 (620)
99 2wjy_A Regulator of nonsense t 98.0 1.8E-05 6.3E-10 86.1 10.8 68 59-128 354-427 (800)
100 3e1s_A Exodeoxyribonuclease V, 97.8 8.4E-05 2.9E-09 78.1 10.7 121 61-197 189-316 (574)
101 3vkw_A Replicase large subunit 97.8 3.6E-05 1.2E-09 77.2 7.2 106 76-198 160-271 (446)
102 2j9r_A Thymidine kinase; TK1, 97.2 0.00057 2E-08 61.6 7.3 85 75-171 26-115 (214)
103 1xx6_A Thymidine kinase; NESG, 97.0 0.0003 1E-08 62.6 2.5 37 75-111 6-46 (191)
104 2orw_A Thymidine kinase; TMTK, 96.9 0.0032 1.1E-07 55.6 9.1 36 76-111 2-41 (184)
105 3ec2_A DNA replication protein 96.7 0.0015 5.2E-08 57.4 5.2 73 76-170 37-113 (180)
106 2kjq_A DNAA-related protein; s 96.6 0.0036 1.2E-07 53.2 6.9 19 76-94 35-53 (149)
107 2orv_A Thymidine kinase; TP4A 96.6 0.00064 2.2E-08 61.8 2.0 80 76-170 18-103 (234)
108 3bos_A Putative DNA replicatio 96.6 0.0045 1.5E-07 56.7 7.7 19 76-94 51-69 (242)
109 3e2i_A Thymidine kinase; Zn-bi 96.5 0.0044 1.5E-07 55.6 6.8 83 75-171 26-115 (219)
110 1w4r_A Thymidine kinase; type 96.2 0.0026 8.8E-08 56.3 3.2 84 70-169 13-103 (195)
111 2p65_A Hypothetical protein PF 96.1 0.02 6.9E-07 49.7 8.8 19 76-94 42-60 (187)
112 2w58_A DNAI, primosome compone 96.1 0.0049 1.7E-07 55.1 4.7 17 78-94 55-71 (202)
113 1l8q_A Chromosomal replication 95.9 0.0089 3E-07 57.8 5.7 72 77-171 37-112 (324)
114 1jbk_A CLPB protein; beta barr 95.8 0.027 9.4E-07 49.0 8.4 19 76-94 42-60 (195)
115 3lfu_A DNA helicase II; SF1 he 95.8 0.0067 2.3E-07 64.7 5.0 62 59-124 7-77 (647)
116 4a15_A XPD helicase, ATP-depen 95.4 0.021 7.2E-07 60.4 7.1 63 61-123 3-73 (620)
117 2qgz_A Helicase loader, putati 95.4 0.0098 3.3E-07 57.2 4.0 71 77-170 152-227 (308)
118 3eie_A Vacuolar protein sortin 95.1 0.052 1.8E-06 52.3 8.2 21 77-97 51-71 (322)
119 2z4s_A Chromosomal replication 95.0 0.023 8E-07 57.4 5.8 72 77-171 130-208 (440)
120 2qby_B CDC6 homolog 3, cell di 94.9 0.049 1.7E-06 53.7 7.5 18 77-94 45-62 (384)
121 3pfi_A Holliday junction ATP-d 94.7 0.041 1.4E-06 53.3 6.3 20 77-96 55-74 (338)
122 2qp9_X Vacuolar protein sortin 94.3 0.092 3.2E-06 51.4 7.9 20 77-96 84-103 (355)
123 1xwi_A SKD1 protein; VPS4B, AA 94.3 0.11 3.8E-06 50.0 8.4 20 77-96 45-64 (322)
124 3h4m_A Proteasome-activating n 94.3 0.069 2.4E-06 50.2 6.8 21 76-96 50-70 (285)
125 3b9p_A CG5977-PA, isoform A; A 94.3 0.15 5E-06 48.3 9.0 20 76-95 53-72 (297)
126 2o0j_A Terminase, DNA packagin 94.2 0.15 5E-06 50.4 9.0 108 61-171 163-287 (385)
127 2qby_A CDC6 homolog 1, cell di 94.2 0.12 4E-06 50.7 8.3 19 76-94 44-62 (386)
128 1pjr_A PCRA; DNA repair, DNA r 94.1 0.038 1.3E-06 59.6 5.1 61 59-123 9-78 (724)
129 1uaa_A REP helicase, protein ( 94.0 0.035 1.2E-06 59.4 4.5 59 61-123 2-69 (673)
130 3crv_A XPD/RAD3 related DNA he 94.0 0.11 3.8E-06 54.1 8.2 119 238-367 392-541 (551)
131 2v1u_A Cell division control p 94.0 0.073 2.5E-06 52.3 6.5 19 76-94 43-61 (387)
132 3vfd_A Spastin; ATPase, microt 93.7 0.16 5.3E-06 50.4 8.3 21 77-97 148-168 (389)
133 3cpe_A Terminase, DNA packagin 93.7 0.19 6.5E-06 52.8 9.2 108 61-171 163-287 (592)
134 1hqc_A RUVB; extended AAA-ATPa 93.6 0.046 1.6E-06 52.5 4.1 19 77-95 38-56 (324)
135 3d8b_A Fidgetin-like protein 1 93.6 0.14 4.6E-06 50.2 7.6 23 76-98 116-138 (357)
136 3u4q_A ATP-dependent helicase/ 93.6 0.071 2.4E-06 61.1 6.2 60 60-123 9-79 (1232)
137 3pvs_A Replication-associated 92.8 0.091 3.1E-06 53.1 5.0 19 77-95 50-68 (447)
138 2vhj_A Ntpase P4, P4; non- hyd 92.8 0.16 5.6E-06 48.5 6.3 24 76-99 122-145 (331)
139 2b8t_A Thymidine kinase; deoxy 92.6 0.11 3.9E-06 47.0 4.8 37 75-111 10-50 (223)
140 3exa_A TRNA delta(2)-isopenten 92.6 0.092 3.1E-06 50.0 4.3 24 76-99 2-25 (322)
141 2zan_A Vacuolar protein sortin 92.5 0.21 7E-06 50.5 7.2 21 76-96 166-186 (444)
142 1jr3_A DNA polymerase III subu 92.5 0.091 3.1E-06 51.4 4.4 17 78-94 39-55 (373)
143 4b4t_J 26S protease regulatory 92.4 0.32 1.1E-05 48.1 8.1 20 77-96 182-201 (405)
144 2zpa_A Uncharacterized protein 92.3 0.087 3E-06 55.5 4.2 91 61-170 175-268 (671)
145 1fnn_A CDC6P, cell division co 92.3 0.35 1.2E-05 47.4 8.5 16 79-94 46-61 (389)
146 2gno_A DNA polymerase III, gam 92.3 0.17 5.7E-06 48.3 5.8 20 77-96 18-37 (305)
147 1sxj_A Activator 1 95 kDa subu 92.2 0.15 5.2E-06 52.6 5.9 23 77-99 77-99 (516)
148 4b4t_L 26S protease subunit RP 92.2 0.37 1.3E-05 48.2 8.4 20 77-96 215-234 (437)
149 2qmh_A HPR kinase/phosphorylas 91.9 0.11 3.7E-06 46.1 3.6 26 75-100 32-57 (205)
150 3u61_B DNA polymerase accessor 91.7 0.37 1.3E-05 46.1 7.7 20 78-97 49-68 (324)
151 3a8t_A Adenylate isopentenyltr 91.6 0.13 4.5E-06 49.5 4.2 22 77-98 40-61 (339)
152 3n70_A Transport activator; si 91.4 0.097 3.3E-06 43.8 2.7 20 75-94 22-41 (145)
153 1kgd_A CASK, peripheral plasma 91.3 0.11 3.7E-06 45.3 3.0 20 75-94 3-22 (180)
154 3co5_A Putative two-component 90.8 0.11 3.6E-06 43.5 2.4 20 75-94 25-44 (143)
155 1a5t_A Delta prime, HOLB; zinc 90.8 0.089 3.1E-06 51.0 2.1 18 78-95 25-42 (334)
156 1sxj_E Activator 1 40 kDa subu 90.8 0.27 9.2E-06 47.7 5.6 15 80-94 39-53 (354)
157 3foz_A TRNA delta(2)-isopenten 90.3 0.21 7.1E-06 47.5 4.1 22 77-98 10-31 (316)
158 1qhx_A CPT, protein (chloramph 90.2 0.15 5.2E-06 43.9 3.0 21 76-96 2-22 (178)
159 3cmu_A Protein RECA, recombina 89.8 0.19 6.3E-06 59.5 4.0 79 76-170 1426-1518(2050)
160 1c9k_A COBU, adenosylcobinamid 89.8 0.16 5.5E-06 44.3 2.7 43 80-122 2-44 (180)
161 2dr3_A UPF0273 protein PH0284; 89.8 0.28 9.7E-06 44.6 4.6 50 76-126 22-75 (247)
162 3tau_A Guanylate kinase, GMP k 89.7 0.17 5.8E-06 45.2 3.0 20 76-95 7-26 (208)
163 1kht_A Adenylate kinase; phosp 89.3 0.19 6.4E-06 43.8 2.8 19 76-94 2-20 (192)
164 3ney_A 55 kDa erythrocyte memb 89.2 0.2 6.9E-06 44.4 3.0 20 75-94 17-36 (197)
165 2z43_A DNA repair and recombin 88.9 0.35 1.2E-05 46.5 4.7 51 76-126 106-167 (324)
166 2zts_A Putative uncharacterize 88.8 0.29 9.8E-06 44.7 3.8 49 76-125 29-82 (251)
167 3trf_A Shikimate kinase, SK; a 88.8 0.21 7.3E-06 43.3 2.8 19 77-95 5-23 (185)
168 2eyu_A Twitching motility prot 88.7 0.2 6.8E-06 46.6 2.7 20 75-94 23-42 (261)
169 3pxi_A Negative regulator of g 88.6 0.56 1.9E-05 50.8 6.5 16 79-94 523-538 (758)
170 3vaa_A Shikimate kinase, SK; s 88.5 0.24 8.1E-06 43.8 3.0 19 76-94 24-42 (199)
171 3lw7_A Adenylate kinase relate 88.5 0.22 7.5E-06 42.5 2.7 26 78-104 2-27 (179)
172 3tr0_A Guanylate kinase, GMP k 88.3 0.25 8.5E-06 43.6 3.0 19 76-94 6-24 (205)
173 1qvr_A CLPB protein; coiled co 88.3 0.63 2.2E-05 51.1 6.8 19 76-94 190-208 (854)
174 3crm_A TRNA delta(2)-isopenten 88.2 0.35 1.2E-05 46.3 4.1 20 77-96 5-24 (323)
175 1zp6_A Hypothetical protein AT 88.1 0.24 8.2E-06 43.2 2.7 20 75-94 7-26 (191)
176 3te6_A Regulatory protein SIR3 88.0 0.26 8.9E-06 47.2 3.0 27 68-94 36-62 (318)
177 2j41_A Guanylate kinase; GMP, 87.8 0.28 9.7E-06 43.3 3.0 20 75-94 4-23 (207)
178 3cmw_A Protein RECA, recombina 87.7 0.35 1.2E-05 56.4 4.3 79 76-170 1430-1522(1706)
179 1lvg_A Guanylate kinase, GMP k 87.6 0.24 8.2E-06 43.8 2.4 19 76-94 3-21 (198)
180 2ze6_A Isopentenyl transferase 87.6 0.32 1.1E-05 45.0 3.3 16 79-94 3-18 (253)
181 1tev_A UMP-CMP kinase; ploop, 87.5 0.27 9.1E-06 42.9 2.6 20 76-95 2-21 (196)
182 2qor_A Guanylate kinase; phosp 87.4 0.28 9.5E-06 43.5 2.7 19 76-94 11-29 (204)
183 2oap_1 GSPE-2, type II secreti 87.4 0.26 8.7E-06 50.7 2.7 19 76-94 259-277 (511)
184 3cf0_A Transitional endoplasmi 87.4 0.91 3.1E-05 43.0 6.5 33 76-108 48-80 (301)
185 3iij_A Coilin-interacting nucl 87.2 0.31 1E-05 42.2 2.8 21 75-95 9-29 (180)
186 2ehv_A Hypothetical protein PH 87.2 0.6 2.1E-05 42.5 4.9 33 75-107 28-65 (251)
187 4gp7_A Metallophosphoesterase; 87.1 0.3 1E-05 42.0 2.7 20 76-95 8-27 (171)
188 3a00_A Guanylate kinase, GMP k 87.0 0.29 9.8E-06 42.7 2.5 18 77-94 1-18 (186)
189 1ak2_A Adenylate kinase isoenz 86.7 0.35 1.2E-05 43.9 3.0 28 68-95 7-34 (233)
190 1y63_A LMAJ004144AAA protein; 86.6 0.36 1.2E-05 42.0 2.9 19 76-94 9-27 (184)
191 3umf_A Adenylate kinase; rossm 86.5 0.34 1.2E-05 43.7 2.7 21 76-96 28-48 (217)
192 3cf2_A TER ATPase, transitiona 86.5 1.6 5.6E-05 47.1 8.5 32 77-108 511-542 (806)
193 1ly1_A Polynucleotide kinase; 86.5 0.33 1.1E-05 41.7 2.6 19 78-96 3-21 (181)
194 3d3q_A TRNA delta(2)-isopenten 86.4 0.48 1.6E-05 45.7 3.9 19 78-96 8-26 (340)
195 3eph_A TRNA isopentenyltransfe 86.4 0.42 1.4E-05 47.2 3.5 20 77-96 2-21 (409)
196 2i1q_A DNA repair and recombin 86.3 0.44 1.5E-05 45.7 3.6 24 76-99 97-120 (322)
197 1knq_A Gluconate kinase; ALFA/ 86.3 0.36 1.2E-05 41.4 2.7 20 75-94 6-25 (175)
198 1kag_A SKI, shikimate kinase I 86.3 0.34 1.2E-05 41.5 2.5 18 77-94 4-21 (173)
199 1n0w_A DNA repair protein RAD5 86.3 0.67 2.3E-05 42.0 4.7 24 76-99 23-46 (243)
200 1gm5_A RECG; helicase, replica 86.2 2.1 7.3E-05 46.2 9.2 80 239-320 417-502 (780)
201 2cvh_A DNA repair and recombin 86.1 0.64 2.2E-05 41.4 4.4 32 76-107 19-51 (220)
202 3kb2_A SPBC2 prophage-derived 86.1 0.36 1.2E-05 41.1 2.6 17 79-95 3-19 (173)
203 4eun_A Thermoresistant glucoki 85.9 0.41 1.4E-05 42.3 3.0 19 76-94 28-46 (200)
204 3cm0_A Adenylate kinase; ATP-b 85.9 0.32 1.1E-05 42.1 2.3 20 76-95 3-22 (186)
205 2v9p_A Replication protein E1; 85.9 0.45 1.5E-05 45.2 3.4 29 76-105 125-155 (305)
206 1qvr_A CLPB protein; coiled co 85.7 0.53 1.8E-05 51.7 4.3 17 78-94 589-605 (854)
207 1e9r_A Conjugal transfer prote 85.7 0.57 1.9E-05 47.0 4.2 41 75-115 51-95 (437)
208 2w0m_A SSO2452; RECA, SSPF, un 85.7 0.82 2.8E-05 40.9 5.0 33 76-108 22-58 (235)
209 1nks_A Adenylate kinase; therm 85.7 1.1 3.8E-05 38.7 5.7 16 79-94 3-18 (194)
210 2gza_A Type IV secretion syste 85.6 0.35 1.2E-05 47.3 2.5 20 75-94 173-192 (361)
211 1vma_A Cell division protein F 85.5 1.6 5.4E-05 41.5 7.0 87 76-168 103-197 (306)
212 2rhm_A Putative kinase; P-loop 85.5 0.41 1.4E-05 41.7 2.7 18 77-94 5-22 (193)
213 3syl_A Protein CBBX; photosynt 85.4 0.41 1.4E-05 45.3 2.9 19 76-94 66-84 (309)
214 2plr_A DTMP kinase, probable t 85.4 0.43 1.5E-05 42.2 2.8 19 76-94 3-21 (213)
215 2qz4_A Paraplegin; AAA+, SPG7, 85.4 0.43 1.5E-05 43.9 2.9 20 76-95 38-57 (262)
216 2v3c_C SRP54, signal recogniti 85.2 0.46 1.6E-05 47.6 3.2 87 78-170 100-193 (432)
217 2ewv_A Twitching motility prot 85.2 0.39 1.3E-05 47.2 2.6 20 75-94 134-153 (372)
218 3jvv_A Twitching mobility prot 85.1 0.46 1.6E-05 46.3 3.1 20 75-94 121-140 (356)
219 3uie_A Adenylyl-sulfate kinase 85.1 0.45 1.5E-05 42.0 2.8 20 75-94 23-42 (200)
220 1z6g_A Guanylate kinase; struc 84.9 0.45 1.5E-05 42.8 2.7 20 75-94 21-40 (218)
221 2c95_A Adenylate kinase 1; tra 84.8 0.48 1.7E-05 41.3 2.9 19 76-94 8-26 (196)
222 1lv7_A FTSH; alpha/beta domain 84.8 0.46 1.6E-05 43.7 2.8 18 77-94 45-62 (257)
223 1d2n_A N-ethylmaleimide-sensit 84.6 0.42 1.4E-05 44.5 2.5 20 76-95 63-82 (272)
224 1ex7_A Guanylate kinase; subst 84.6 0.73 2.5E-05 40.3 3.9 17 78-94 2-18 (186)
225 3hr8_A Protein RECA; alpha and 84.6 0.55 1.9E-05 45.7 3.3 35 76-110 60-98 (356)
226 2bjv_A PSP operon transcriptio 84.3 0.47 1.6E-05 43.9 2.7 19 76-94 28-46 (265)
227 3c8u_A Fructokinase; YP_612366 84.3 0.46 1.6E-05 42.2 2.5 20 75-94 20-39 (208)
228 1p9r_A General secretion pathw 84.1 0.47 1.6E-05 47.4 2.7 20 75-94 165-184 (418)
229 1znw_A Guanylate kinase, GMP k 84.1 0.55 1.9E-05 41.7 3.0 20 75-94 18-37 (207)
230 1v5w_A DMC1, meiotic recombina 84.1 0.81 2.8E-05 44.3 4.3 33 76-108 121-163 (343)
231 2v54_A DTMP kinase, thymidylat 84.0 0.57 2E-05 41.2 3.0 19 76-94 3-21 (204)
232 3hws_A ATP-dependent CLP prote 84.0 0.48 1.6E-05 46.3 2.7 19 76-94 50-68 (363)
233 3lnc_A Guanylate kinase, GMP k 83.6 0.39 1.3E-05 43.5 1.8 19 76-94 26-44 (231)
234 3t15_A Ribulose bisphosphate c 83.6 0.54 1.8E-05 44.4 2.8 18 77-94 36-53 (293)
235 1s96_A Guanylate kinase, GMP k 83.5 0.61 2.1E-05 42.0 3.0 20 75-94 14-33 (219)
236 1zd8_A GTP:AMP phosphotransfer 83.5 0.56 1.9E-05 42.3 2.7 20 77-96 7-26 (227)
237 2zr9_A Protein RECA, recombina 83.5 1.1 3.8E-05 43.4 5.1 33 76-108 60-96 (349)
238 2pt7_A CAG-ALFA; ATPase, prote 83.5 0.49 1.7E-05 45.6 2.5 19 76-94 170-188 (330)
239 3asz_A Uridine kinase; cytidin 83.4 0.56 1.9E-05 41.6 2.7 19 76-94 5-23 (211)
240 1zuh_A Shikimate kinase; alpha 83.3 0.58 2E-05 39.8 2.6 18 77-94 7-24 (168)
241 1ofh_A ATP-dependent HSL prote 83.3 0.54 1.8E-05 44.4 2.7 19 76-94 49-67 (310)
242 1f2t_A RAD50 ABC-ATPase; DNA d 83.2 0.85 2.9E-05 38.2 3.6 24 76-99 22-47 (149)
243 3t61_A Gluconokinase; PSI-biol 83.2 0.53 1.8E-05 41.5 2.4 18 77-94 18-35 (202)
244 2bwj_A Adenylate kinase 5; pho 83.2 0.59 2E-05 40.9 2.7 18 77-94 12-29 (199)
245 4b4t_M 26S protease regulatory 83.1 0.9 3.1E-05 45.4 4.2 19 77-95 215-233 (434)
246 1aky_A Adenylate kinase; ATP:A 83.0 0.65 2.2E-05 41.6 2.9 19 76-94 3-21 (220)
247 1gvn_B Zeta; postsegregational 82.9 0.55 1.9E-05 44.3 2.5 21 76-96 32-52 (287)
248 2bdt_A BH3686; alpha-beta prot 82.9 1 3.5E-05 39.1 4.2 18 77-94 2-19 (189)
249 3sr0_A Adenylate kinase; phosp 82.9 0.59 2E-05 41.7 2.6 20 79-98 2-21 (206)
250 3kl4_A SRP54, signal recogniti 82.8 2.1 7.1E-05 42.8 6.7 87 77-170 97-192 (433)
251 2px0_A Flagellar biosynthesis 82.7 1.2 4.1E-05 42.1 4.8 82 76-168 104-193 (296)
252 2chg_A Replication factor C sm 82.7 0.62 2.1E-05 41.1 2.7 17 78-94 39-55 (226)
253 3cmw_A Protein RECA, recombina 82.6 2 6.7E-05 50.3 7.3 32 76-107 731-766 (1706)
254 2cdn_A Adenylate kinase; phosp 82.6 0.69 2.4E-05 40.7 3.0 19 76-94 19-37 (201)
255 1tue_A Replication protein E1; 82.5 0.72 2.5E-05 41.0 2.9 20 77-96 58-77 (212)
256 3tqf_A HPR(Ser) kinase; transf 82.5 1.1 3.8E-05 38.6 4.0 27 75-101 14-40 (181)
257 2wwf_A Thymidilate kinase, put 82.4 0.71 2.4E-05 40.8 3.0 19 76-94 9-27 (212)
258 1cke_A CK, MSSA, protein (cyti 82.4 0.66 2.2E-05 41.6 2.7 18 77-94 5-22 (227)
259 2pez_A Bifunctional 3'-phospho 82.3 0.69 2.4E-05 39.8 2.8 19 76-94 4-22 (179)
260 2qt1_A Nicotinamide riboside k 82.3 0.67 2.3E-05 41.0 2.7 20 75-94 19-38 (207)
261 2yvu_A Probable adenylyl-sulfa 82.3 0.7 2.4E-05 40.1 2.8 20 75-94 11-30 (186)
262 3uk6_A RUVB-like 2; hexameric 82.3 0.62 2.1E-05 45.3 2.7 18 77-94 70-87 (368)
263 4ag6_A VIRB4 ATPase, type IV s 82.2 1.2 4.1E-05 43.9 4.8 37 76-112 34-74 (392)
264 3fb4_A Adenylate kinase; psych 82.1 0.64 2.2E-05 41.4 2.6 17 79-95 2-18 (216)
265 1u94_A RECA protein, recombina 82.0 1.3 4.6E-05 43.0 5.0 34 76-109 62-99 (356)
266 3dm5_A SRP54, signal recogniti 82.0 1.5 5.3E-05 43.8 5.4 52 77-128 100-158 (443)
267 3hjh_A Transcription-repair-co 82.0 2.3 7.7E-05 43.2 6.8 56 76-131 13-70 (483)
268 1qf9_A UMP/CMP kinase, protein 81.9 0.68 2.3E-05 40.1 2.6 19 77-95 6-24 (194)
269 1e6c_A Shikimate kinase; phosp 81.9 0.65 2.2E-05 39.6 2.4 17 78-94 3-19 (173)
270 1zak_A Adenylate kinase; ATP:A 81.8 0.68 2.3E-05 41.5 2.6 19 77-95 5-23 (222)
271 2vli_A Antibiotic resistance p 81.7 0.51 1.7E-05 40.7 1.6 21 76-96 4-24 (183)
272 1via_A Shikimate kinase; struc 81.4 0.69 2.4E-05 39.7 2.4 16 79-94 6-21 (175)
273 3oiy_A Reverse gyrase helicase 81.3 3 0.0001 41.1 7.4 77 239-317 64-148 (414)
274 1ixz_A ATP-dependent metallopr 81.3 1.8 6.2E-05 39.5 5.4 18 77-94 49-66 (254)
275 1rz3_A Hypothetical protein rb 81.3 1.6 5.4E-05 38.4 4.8 19 76-94 21-39 (201)
276 2iyv_A Shikimate kinase, SK; t 81.3 0.72 2.4E-05 39.9 2.5 17 78-94 3-19 (184)
277 1ojl_A Transcriptional regulat 81.3 0.71 2.4E-05 43.8 2.7 19 76-94 24-42 (304)
278 4b4t_K 26S protease regulatory 81.2 1.2 4E-05 44.5 4.2 20 76-95 205-224 (428)
279 1nn5_A Similar to deoxythymidy 81.2 0.82 2.8E-05 40.5 2.9 19 76-94 8-26 (215)
280 1pzn_A RAD51, DNA repair and r 81.1 1.2 4.2E-05 43.2 4.3 23 76-98 130-152 (349)
281 3be4_A Adenylate kinase; malar 81.0 0.81 2.8E-05 40.9 2.8 18 77-94 5-22 (217)
282 3kta_A Chromosome segregation 81.0 1.1 3.7E-05 38.6 3.5 23 77-99 26-50 (182)
283 3e70_C DPA, signal recognition 80.9 2.4 8.3E-05 40.6 6.3 32 76-107 128-163 (328)
284 1um8_A ATP-dependent CLP prote 80.9 0.74 2.5E-05 45.1 2.7 19 76-94 71-89 (376)
285 4akg_A Glutathione S-transfera 80.7 3.3 0.00011 50.8 8.6 26 76-101 1266-1291(2695)
286 1uf9_A TT1252 protein; P-loop, 80.6 0.84 2.9E-05 40.0 2.7 20 76-95 7-26 (203)
287 3io5_A Recombination and repai 80.5 0.64 2.2E-05 44.3 2.0 76 79-170 30-124 (333)
288 1xjc_A MOBB protein homolog; s 80.5 2.4 8.1E-05 36.4 5.4 17 78-94 5-21 (169)
289 1ukz_A Uridylate kinase; trans 80.3 1.6 5.5E-05 38.2 4.5 20 77-96 15-34 (203)
290 2jaq_A Deoxyguanosine kinase; 80.3 0.85 2.9E-05 39.9 2.7 16 79-94 2-17 (205)
291 4fcw_A Chaperone protein CLPB; 80.2 0.81 2.8E-05 43.2 2.7 17 78-94 48-64 (311)
292 3dl0_A Adenylate kinase; phosp 80.1 1.3 4.5E-05 39.3 3.9 19 79-97 2-20 (216)
293 3b9q_A Chloroplast SRP recepto 80.1 1.8 6E-05 41.1 4.9 32 76-107 99-134 (302)
294 4edh_A DTMP kinase, thymidylat 80.0 1.7 5.7E-05 38.9 4.5 20 75-94 4-23 (213)
295 3tlx_A Adenylate kinase 2; str 80.0 0.89 3.1E-05 41.5 2.8 21 76-96 28-48 (243)
296 1njg_A DNA polymerase III subu 79.9 0.91 3.1E-05 40.6 2.8 17 78-94 46-62 (250)
297 1xp8_A RECA protein, recombina 79.9 1.7 5.9E-05 42.4 4.9 33 76-108 73-109 (366)
298 3nwj_A ATSK2; P loop, shikimat 79.9 0.84 2.9E-05 42.0 2.5 20 75-94 46-65 (250)
299 4a74_A DNA repair and recombin 79.8 1.1 3.8E-05 40.1 3.3 22 76-97 24-45 (231)
300 2pt5_A Shikimate kinase, SK; a 79.7 0.9 3.1E-05 38.5 2.6 16 79-94 2-17 (168)
301 2bbw_A Adenylate kinase 4, AK4 79.6 0.99 3.4E-05 41.2 2.9 19 76-94 26-44 (246)
302 2r2a_A Uncharacterized protein 79.6 1.2 4E-05 39.5 3.3 20 79-98 7-26 (199)
303 1m7g_A Adenylylsulfate kinase; 79.5 0.95 3.2E-05 40.2 2.7 20 75-94 23-42 (211)
304 1e4v_A Adenylate kinase; trans 79.4 0.89 3E-05 40.5 2.5 17 79-95 2-18 (214)
305 1nlf_A Regulatory protein REPA 79.3 1.2 4.2E-05 41.5 3.5 23 75-97 28-50 (279)
306 1rj9_A FTSY, signal recognitio 79.3 1.9 6.4E-05 40.9 4.8 32 76-107 101-136 (304)
307 4e22_A Cytidylate kinase; P-lo 79.3 1 3.5E-05 41.4 2.9 19 76-94 26-44 (252)
308 2c9o_A RUVB-like 1; hexameric 79.2 0.9 3.1E-05 45.9 2.8 18 77-94 63-80 (456)
309 3tif_A Uncharacterized ABC tra 79.0 1.1 3.6E-05 40.9 2.9 64 248-315 150-218 (235)
310 2pbr_A DTMP kinase, thymidylat 78.9 1 3.4E-05 39.1 2.7 16 79-94 2-17 (195)
311 2if2_A Dephospho-COA kinase; a 78.8 0.99 3.4E-05 39.7 2.6 16 79-94 3-18 (204)
312 4tmk_A Protein (thymidylate ki 78.7 1.9 6.6E-05 38.5 4.5 19 76-94 2-20 (213)
313 4b4t_I 26S protease regulatory 78.6 1.6 5.5E-05 43.4 4.2 19 77-95 216-234 (437)
314 3bh0_A DNAB-like replicative h 78.6 3.5 0.00012 39.2 6.6 33 76-108 67-103 (315)
315 2r62_A Cell division protease 78.6 0.46 1.6E-05 44.0 0.3 18 77-94 44-61 (268)
316 1iy2_A ATP-dependent metallopr 78.5 2.5 8.4E-05 39.3 5.4 17 78-94 74-90 (278)
317 1ye8_A Protein THEP1, hypothet 78.5 1.1 3.7E-05 38.9 2.6 16 79-94 2-17 (178)
318 3a4m_A L-seryl-tRNA(SEC) kinas 78.3 1.1 3.7E-05 41.5 2.8 18 77-94 4-21 (260)
319 3qks_A DNA double-strand break 78.3 1.5 5.1E-05 38.8 3.6 26 76-101 22-49 (203)
320 3hgt_A HDA1 complex subunit 3; 78.0 9.2 0.00032 36.3 9.1 103 241-359 127-237 (328)
321 4b4t_H 26S protease regulatory 77.9 1.4 4.9E-05 44.1 3.7 20 76-95 242-261 (467)
322 1vht_A Dephospho-COA kinase; s 77.8 1.2 4E-05 39.8 2.8 18 77-94 4-21 (218)
323 2p5t_B PEZT; postsegregational 77.8 0.82 2.8E-05 42.1 1.8 19 76-94 31-49 (253)
324 2r44_A Uncharacterized protein 77.8 0.85 2.9E-05 43.7 2.0 19 76-94 45-63 (331)
325 2z0h_A DTMP kinase, thymidylat 77.8 1 3.5E-05 39.2 2.4 16 79-94 2-17 (197)
326 1nij_A Hypothetical protein YJ 77.7 1.3 4.3E-05 42.4 3.1 33 78-110 5-39 (318)
327 1jjv_A Dephospho-COA kinase; P 77.7 1.1 3.8E-05 39.5 2.6 16 79-94 4-19 (206)
328 3auy_A DNA double-strand break 77.6 1.5 5.1E-05 42.9 3.7 25 75-99 23-49 (371)
329 2x8a_A Nuclear valosin-contain 77.6 1.2 4E-05 41.6 2.8 18 77-94 44-61 (274)
330 1in4_A RUVB, holliday junction 77.5 1 3.4E-05 43.4 2.4 17 78-94 52-68 (334)
331 2xb4_A Adenylate kinase; ATP-b 77.4 1.1 3.8E-05 40.2 2.6 16 79-94 2-17 (223)
332 3tqc_A Pantothenate kinase; bi 77.3 2.2 7.7E-05 40.7 4.8 22 79-100 94-117 (321)
333 3hu3_A Transitional endoplasmi 77.3 2.9 9.8E-05 42.6 5.8 31 76-106 237-267 (489)
334 1w36_B RECB, exodeoxyribonucle 77.1 2.9 9.8E-05 47.6 6.3 48 75-123 15-78 (1180)
335 1sq5_A Pantothenate kinase; P- 77.0 2.4 8.2E-05 40.2 4.9 25 76-100 79-105 (308)
336 4a1f_A DNAB helicase, replicat 77.0 4.5 0.00015 38.9 6.8 42 76-117 45-93 (338)
337 2cbz_A Multidrug resistance-as 76.9 1.3 4.5E-05 40.3 2.9 64 248-315 132-201 (237)
338 2og2_A Putative signal recogni 76.8 2.4 8.3E-05 41.2 4.9 32 76-107 156-191 (359)
339 2chq_A Replication factor C sm 76.6 2.2 7.4E-05 40.2 4.5 16 79-94 40-55 (319)
340 1odf_A YGR205W, hypothetical 3 76.5 1.3 4.3E-05 41.8 2.7 19 76-94 30-48 (290)
341 3nbx_X ATPase RAVA; AAA+ ATPas 76.5 1.2 4.1E-05 45.5 2.7 20 75-94 39-58 (500)
342 3gfo_A Cobalt import ATP-bindi 76.5 1.4 4.7E-05 41.2 2.9 20 75-94 32-51 (275)
343 2f1r_A Molybdopterin-guanine d 76.3 0.85 2.9E-05 39.3 1.3 17 78-94 3-19 (171)
344 1gtv_A TMK, thymidylate kinase 76.3 0.77 2.6E-05 40.7 1.1 16 79-94 2-17 (214)
345 1htw_A HI0065; nucleotide-bind 75.9 1.5 5E-05 37.2 2.7 20 75-94 31-50 (158)
346 3aez_A Pantothenate kinase; tr 75.9 1.4 4.6E-05 42.1 2.8 25 75-99 88-114 (312)
347 1zu4_A FTSY; GTPase, signal re 75.8 2.7 9.3E-05 40.1 4.9 32 76-107 104-139 (320)
348 3nh6_A ATP-binding cassette SU 75.7 1.2 4.1E-05 42.3 2.3 63 248-315 195-261 (306)
349 2jeo_A Uridine-cytidine kinase 75.7 1.4 4.8E-05 40.2 2.7 19 76-94 24-42 (245)
350 3pxg_A Negative regulator of g 75.6 1.4 4.6E-05 44.7 2.8 20 75-94 199-218 (468)
351 1cr0_A DNA primase/helicase; R 75.5 1.8 6.2E-05 40.6 3.5 32 76-107 34-70 (296)
352 2pcj_A ABC transporter, lipopr 75.3 1.5 5.2E-05 39.5 2.8 20 75-94 28-47 (224)
353 3i4u_A ATP-dependent RNA helic 75.3 0.79 2.7E-05 42.7 0.9 56 391-452 13-69 (270)
354 2vp4_A Deoxynucleoside kinase; 75.2 1.5 5.1E-05 39.6 2.8 20 75-94 18-37 (230)
355 2ff7_A Alpha-hemolysin translo 75.1 1.6 5.4E-05 40.0 2.9 63 248-315 150-216 (247)
356 2grj_A Dephospho-COA kinase; T 75.0 1.3 4.5E-05 38.9 2.3 42 76-119 11-52 (192)
357 2i3b_A HCR-ntpase, human cance 75.0 1.5 5E-05 38.4 2.5 18 77-94 1-18 (189)
358 4eaq_A DTMP kinase, thymidylat 75.0 1.5 5.3E-05 39.6 2.8 19 76-94 25-43 (229)
359 2pze_A Cystic fibrosis transme 74.8 1.6 5.6E-05 39.4 2.9 64 248-315 135-202 (229)
360 1mv5_A LMRA, multidrug resista 74.7 1.5 5.2E-05 40.0 2.7 20 75-94 26-45 (243)
361 2ghi_A Transport protein; mult 74.7 1.6 5.6E-05 40.3 2.9 63 248-315 160-226 (260)
362 4g1u_C Hemin import ATP-bindin 74.6 1.6 5.6E-05 40.5 2.9 20 75-94 35-54 (266)
363 1sgw_A Putative ABC transporte 74.6 1.6 5.3E-05 39.1 2.6 20 75-94 33-52 (214)
364 1g8p_A Magnesium-chelatase 38 74.5 0.8 2.7E-05 44.1 0.8 19 77-95 45-63 (350)
365 1g6h_A High-affinity branched- 74.1 1.7 5.8E-05 40.1 2.9 50 248-299 158-211 (257)
366 1g41_A Heat shock protein HSLU 73.9 1.6 5.4E-05 43.7 2.7 18 77-94 50-67 (444)
367 1ji0_A ABC transporter; ATP bi 73.9 1.8 6E-05 39.5 2.9 20 75-94 30-49 (240)
368 1ltq_A Polynucleotide kinase; 73.8 1.6 5.3E-05 41.1 2.6 19 78-96 3-21 (301)
369 1b0u_A Histidine permease; ABC 73.8 1.7 6E-05 40.1 2.9 51 248-300 158-212 (262)
370 3qf7_A RAD50; ABC-ATPase, ATPa 73.8 1.6 5.5E-05 42.6 2.8 18 77-94 23-40 (365)
371 1g5t_A COB(I)alamin adenosyltr 73.7 3.7 0.00013 36.0 4.8 33 76-108 27-63 (196)
372 3r20_A Cytidylate kinase; stru 73.6 1.8 6.1E-05 39.3 2.8 20 76-95 8-27 (233)
373 2jgn_A DBX, DDX3, ATP-dependen 73.5 21 0.00071 30.6 9.7 77 87-163 29-120 (185)
374 3b85_A Phosphate starvation-in 72.9 1.5 5E-05 39.1 2.1 25 68-94 15-39 (208)
375 3lv8_A DTMP kinase, thymidylat 72.9 1.9 6.7E-05 39.1 2.9 20 75-94 25-44 (236)
376 2d2e_A SUFC protein; ABC-ATPas 72.9 1.9 6.6E-05 39.5 2.9 51 248-300 148-202 (250)
377 3m6a_A ATP-dependent protease 72.8 1.7 5.9E-05 44.9 2.8 19 76-94 107-125 (543)
378 2q6t_A DNAB replication FORK h 72.7 6.4 0.00022 39.4 7.0 32 76-107 199-235 (444)
379 2zu0_C Probable ATP-dependent 72.6 1.9 6.6E-05 40.0 2.9 66 248-315 169-238 (267)
380 1vpl_A ABC transporter, ATP-bi 72.6 2 6.7E-05 39.7 2.9 19 76-94 40-58 (256)
381 2ce7_A Cell division protein F 72.6 1.8 6.1E-05 43.9 2.8 18 77-94 49-66 (476)
382 3ake_A Cytidylate kinase; CMP 72.4 2 6.9E-05 37.6 2.9 16 79-94 4-19 (208)
383 2ixe_A Antigen peptide transpo 72.3 2 6.8E-05 40.0 2.9 64 248-315 161-229 (271)
384 2olj_A Amino acid ABC transpor 72.3 2 6.8E-05 39.8 2.9 51 248-300 164-218 (263)
385 2h92_A Cytidylate kinase; ross 72.3 1.8 6.2E-05 38.4 2.5 19 77-95 3-21 (219)
386 2r6a_A DNAB helicase, replicat 72.1 7.2 0.00025 39.1 7.2 33 76-108 202-239 (454)
387 2nq2_C Hypothetical ABC transp 71.8 2.1 7E-05 39.4 2.8 20 75-94 29-48 (253)
388 2yz2_A Putative ABC transporte 71.8 2.1 7.1E-05 39.7 2.9 49 249-299 144-196 (266)
389 1uj2_A Uridine-cytidine kinase 71.8 2 6.9E-05 39.3 2.8 18 77-94 22-39 (252)
390 2qi9_C Vitamin B12 import ATP- 71.8 2.1 7.2E-05 39.3 2.9 20 75-94 24-43 (249)
391 3lda_A DNA repair protein RAD5 71.7 3.8 0.00013 40.4 4.9 23 76-98 177-199 (400)
392 3bgw_A DNAB-like replicative h 71.5 4.7 0.00016 40.4 5.7 32 76-107 196-231 (444)
393 2ihy_A ABC transporter, ATP-bi 71.4 2.1 7.3E-05 40.0 2.9 19 76-94 46-64 (279)
394 2f6r_A COA synthase, bifunctio 71.2 2 6.9E-05 40.1 2.7 18 77-94 75-92 (281)
395 4hlc_A DTMP kinase, thymidylat 71.1 4.1 0.00014 36.1 4.6 34 77-110 2-39 (205)
396 2qen_A Walker-type ATPase; unk 71.1 4.2 0.00014 38.7 5.1 30 77-107 31-60 (350)
397 3bs4_A Uncharacterized protein 71.1 3.3 0.00011 38.2 4.0 52 76-128 20-75 (260)
398 2hjv_A ATP-dependent RNA helic 70.9 14 0.00049 30.8 7.9 76 88-163 20-109 (163)
399 1ls1_A Signal recognition part 70.8 8.5 0.00029 36.1 7.0 87 76-169 97-192 (295)
400 2yhs_A FTSY, cell division pro 70.6 4.1 0.00014 41.3 4.9 32 76-107 292-327 (503)
401 3eaq_A Heat resistant RNA depe 70.2 11 0.00038 33.2 7.3 76 87-163 15-105 (212)
402 3pxi_A Negative regulator of g 70.1 2.1 7.1E-05 46.3 2.8 20 75-94 199-218 (758)
403 1knx_A Probable HPR(Ser) kinas 69.9 3.2 0.00011 39.3 3.7 26 76-101 146-171 (312)
404 1fuk_A Eukaryotic initiation f 69.8 20 0.00069 29.9 8.6 74 90-163 17-104 (165)
405 2eyq_A TRCF, transcription-rep 69.8 15 0.0005 41.6 9.8 79 240-320 653-737 (1151)
406 1sxj_D Activator 1 41 kDa subu 69.8 2.2 7.5E-05 41.0 2.7 17 78-94 59-75 (353)
407 3tmk_A Thymidylate kinase; pho 69.7 2.5 8.6E-05 37.8 2.8 19 76-94 4-22 (216)
408 1iqp_A RFCS; clamp loader, ext 69.7 2.9 9.8E-05 39.5 3.5 17 78-94 47-63 (327)
409 2rb4_A ATP-dependent RNA helic 69.6 14 0.00047 31.3 7.6 83 81-163 12-108 (175)
410 1u0j_A DNA replication protein 69.5 2.6 8.8E-05 39.0 2.9 18 78-95 105-122 (267)
411 3v9p_A DTMP kinase, thymidylat 69.4 2.1 7.3E-05 38.6 2.3 20 75-94 23-42 (227)
412 1q57_A DNA primase/helicase; d 69.3 6.7 0.00023 39.9 6.3 32 76-107 241-277 (503)
413 4ddu_A Reverse gyrase; topoiso 69.0 8.4 0.00029 43.4 7.5 76 239-317 121-205 (1104)
414 1p5z_B DCK, deoxycytidine kina 69.0 2.5 8.5E-05 38.9 2.8 19 76-94 23-41 (263)
415 1j8m_F SRP54, signal recogniti 68.9 4.6 0.00016 38.1 4.6 86 77-169 98-192 (297)
416 1sxj_C Activator 1 40 kDa subu 68.8 2.3 7.9E-05 40.8 2.6 15 80-94 49-63 (340)
417 1q3t_A Cytidylate kinase; nucl 68.7 2.7 9.4E-05 37.9 3.0 20 75-94 14-33 (236)
418 2r8r_A Sensor protein; KDPD, P 68.7 5.4 0.00018 35.9 4.8 19 77-95 6-24 (228)
419 2bbs_A Cystic fibrosis transme 68.7 2.6 8.9E-05 39.6 2.9 64 248-315 164-231 (290)
420 1svm_A Large T antigen; AAA+ f 68.6 2.6 9E-05 41.2 2.9 19 76-94 168-186 (377)
421 1np6_A Molybdopterin-guanine d 68.5 3.4 0.00012 35.5 3.3 17 78-94 7-23 (174)
422 2ocp_A DGK, deoxyguanosine kin 68.0 2.7 9.1E-05 38.1 2.7 18 77-94 2-19 (241)
423 3qkt_A DNA double-strand break 67.9 2.6 9E-05 40.5 2.8 20 75-94 21-40 (339)
424 1tf7_A KAIC; homohexamer, hexa 67.4 5 0.00017 41.2 4.9 32 76-107 38-74 (525)
425 2dhr_A FTSH; AAA+ protein, hex 67.3 2.7 9.1E-05 42.9 2.8 18 77-94 64-81 (499)
426 3zvl_A Bifunctional polynucleo 67.0 2.8 9.7E-05 41.6 2.9 21 76-96 257-277 (416)
427 2pjz_A Hypothetical protein ST 66.7 3 0.0001 38.6 2.8 49 248-300 133-184 (263)
428 2onk_A Molybdate/tungstate ABC 66.4 3.1 0.0001 37.9 2.8 50 248-299 131-185 (240)
429 1a7j_A Phosphoribulokinase; tr 66.0 1.7 5.7E-05 40.9 0.9 18 77-94 5-22 (290)
430 3nwn_A Kinesin-like protein KI 65.8 3.3 0.00011 40.2 2.9 18 77-94 105-122 (359)
431 1yks_A Genome polyprotein [con 65.8 11 0.00039 37.4 7.1 62 100-162 176-245 (440)
432 3fvq_A Fe(3+) IONS import ATP- 65.5 3.1 0.00011 40.4 2.7 19 76-94 29-47 (359)
433 3cf2_A TER ATPase, transitiona 65.4 6.8 0.00023 42.3 5.6 34 77-110 238-271 (806)
434 1pui_A ENGB, probable GTP-bind 65.4 3.2 0.00011 36.3 2.7 20 75-94 24-43 (210)
435 3hjn_A DTMP kinase, thymidylat 65.3 5.2 0.00018 35.1 4.0 31 80-110 3-38 (197)
436 2ffh_A Protein (FFH); SRP54, s 65.2 8.4 0.00029 38.3 5.8 53 76-128 97-156 (425)
437 1bg2_A Kinesin; motor protein, 65.0 3.6 0.00012 39.4 3.0 20 76-95 77-96 (325)
438 1t5i_A C_terminal domain of A 65.0 18 0.00062 30.5 7.4 77 87-163 15-105 (172)
439 1ko7_A HPR kinase/phosphatase; 64.6 5.2 0.00018 37.9 4.0 26 76-101 143-168 (314)
440 3k1j_A LON protease, ATP-depen 64.5 3 0.0001 43.7 2.6 19 76-94 59-77 (604)
441 1ypw_A Transitional endoplasmi 64.4 6.3 0.00022 42.8 5.2 21 76-96 237-257 (806)
442 1z47_A CYSA, putative ABC-tran 64.3 3.4 0.00012 40.1 2.7 20 75-94 39-58 (355)
443 3dc4_A Kinesin-like protein NO 64.3 3.8 0.00013 39.5 3.1 19 76-94 94-112 (344)
444 2p6n_A ATP-dependent RNA helic 64.1 16 0.00054 31.6 6.9 77 87-163 39-128 (191)
445 2j37_W Signal recognition part 64.0 9.1 0.00031 38.9 6.0 86 77-169 101-195 (504)
446 1t6n_A Probable ATP-dependent 63.8 24 0.00083 30.8 8.3 74 241-319 84-169 (220)
447 3sop_A Neuronal-specific septi 63.7 3.3 0.00011 38.4 2.5 16 79-94 4-19 (270)
448 3rlf_A Maltose/maltodextrin im 63.7 3.5 0.00012 40.3 2.7 19 76-94 28-46 (381)
449 1r6b_X CLPA protein; AAA+, N-t 63.6 3.3 0.00011 44.7 2.8 19 76-94 206-224 (758)
450 2xxa_A Signal recognition part 63.2 6.9 0.00024 39.0 4.9 43 77-119 100-149 (433)
451 2yyz_A Sugar ABC transporter, 63.2 3.6 0.00012 39.9 2.7 19 76-94 28-46 (359)
452 3ld9_A DTMP kinase, thymidylat 63.0 4 0.00014 36.7 2.8 20 75-94 19-38 (223)
453 1ry6_A Internal kinesin; kines 63.0 3.1 0.00011 40.4 2.2 19 77-95 83-103 (360)
454 2it1_A 362AA long hypothetical 63.0 3.7 0.00013 39.9 2.7 19 76-94 28-46 (362)
455 3gd7_A Fusion complex of cysti 62.9 3.8 0.00013 40.3 2.9 20 75-94 45-64 (390)
456 1sxj_B Activator 1 37 kDa subu 62.9 4.2 0.00014 38.2 3.1 16 79-94 44-59 (323)
457 2y65_A Kinesin, kinesin heavy 62.8 4.2 0.00014 39.5 3.1 18 77-94 85-102 (365)
458 2h58_A Kinesin-like protein KI 62.7 3.5 0.00012 39.5 2.5 19 76-94 80-98 (330)
459 4a82_A Cystic fibrosis transme 62.4 3.8 0.00013 42.6 2.9 64 248-316 482-549 (578)
460 1t5c_A CENP-E protein, centrom 62.4 4.2 0.00014 39.3 2.9 19 76-94 77-95 (349)
461 2vvg_A Kinesin-2; motor protei 62.3 4.3 0.00015 39.2 3.1 19 76-94 89-107 (350)
462 2l82_A Designed protein OR32; 62.3 37 0.0013 26.1 7.5 46 241-287 3-50 (162)
463 1tf7_A KAIC; homohexamer, hexa 62.3 6.9 0.00024 40.1 4.8 49 76-125 280-332 (525)
464 3bor_A Human initiation factor 62.2 22 0.00075 31.7 7.8 75 239-318 98-183 (237)
465 1f9v_A Kinesin-like protein KA 62.0 3.3 0.00011 40.0 2.2 19 77-95 85-103 (347)
466 1goj_A Kinesin, kinesin heavy 62.0 3.6 0.00012 39.8 2.5 18 77-94 81-98 (355)
467 4a14_A Kinesin, kinesin-like p 61.9 4.4 0.00015 39.1 3.0 18 77-94 84-101 (344)
468 1g29_1 MALK, maltose transport 61.7 4 0.00014 39.8 2.7 19 76-94 28-46 (372)
469 3cob_A Kinesin heavy chain-lik 61.7 3.3 0.00011 40.3 2.1 18 77-94 80-97 (369)
470 3d31_A Sulfate/molybdate ABC t 61.7 3.4 0.00012 40.0 2.2 20 75-94 24-43 (348)
471 3b6u_A Kinesin-like protein KI 61.7 4.3 0.00015 39.5 2.9 19 76-94 101-119 (372)
472 3f9v_A Minichromosome maintena 61.6 3.6 0.00012 42.9 2.6 16 79-94 329-344 (595)
473 1v8k_A Kinesin-like protein KI 61.5 3.3 0.00011 40.8 2.1 19 77-95 155-173 (410)
474 3fdi_A Uncharacterized protein 61.5 4.4 0.00015 35.7 2.7 22 75-96 4-25 (201)
475 1v43_A Sugar-binding transport 61.3 4.1 0.00014 39.8 2.7 19 76-94 36-54 (372)
476 3t0q_A AGR253WP; kinesin, alph 61.3 3.5 0.00012 39.9 2.2 19 77-95 86-104 (349)
477 3lre_A Kinesin-like protein KI 61.3 3.5 0.00012 40.0 2.2 18 77-94 106-123 (355)
478 1x88_A Kinesin-like protein KI 61.3 3.4 0.00012 40.1 2.1 18 77-94 89-106 (359)
479 3bfn_A Kinesin-like protein KI 61.0 4.8 0.00016 39.4 3.1 18 77-94 99-116 (388)
480 3tui_C Methionine import ATP-b 61.0 4.5 0.00015 39.3 2.9 20 75-94 52-71 (366)
481 3gbj_A KIF13B protein; kinesin 60.6 4.6 0.00016 39.1 2.9 18 77-94 93-110 (354)
482 2zfi_A Kinesin-like protein KI 60.6 4.8 0.00017 39.1 3.1 44 76-123 89-132 (366)
483 4etp_A Kinesin-like protein KA 60.5 4.8 0.00016 39.7 3.1 19 77-95 141-159 (403)
484 1r6b_X CLPA protein; AAA+, N-t 60.4 3.8 0.00013 44.2 2.6 16 79-94 490-505 (758)
485 2nr8_A Kinesin-like protein KI 60.2 4.8 0.00016 39.0 2.9 18 77-94 104-121 (358)
486 2heh_A KIF2C protein; kinesin, 60.0 3.8 0.00013 40.1 2.2 18 77-94 135-152 (387)
487 2wbe_C Bipolar kinesin KRP-130 60.0 5 0.00017 39.1 3.1 19 76-94 100-118 (373)
488 3b60_A Lipid A export ATP-bind 59.9 4.4 0.00015 42.2 2.8 64 248-316 485-552 (582)
489 3i32_A Heat resistant RNA depe 59.8 24 0.00083 33.0 7.8 77 87-163 12-102 (300)
490 3qf4_A ABC transporter, ATP-bi 59.7 4.5 0.00015 42.2 2.9 63 248-315 484-550 (587)
491 3b5x_A Lipid A export ATP-bind 59.6 4.4 0.00015 42.2 2.8 63 248-315 485-551 (582)
492 3u06_A Protein claret segregat 59.5 5.1 0.00017 39.6 3.1 19 76-94 138-156 (412)
493 2npi_A Protein CLP1; CLP1-PCF1 59.5 4.3 0.00015 40.9 2.6 19 76-94 137-155 (460)
494 1lw7_A Transcriptional regulat 59.4 4.2 0.00014 39.5 2.4 18 77-94 170-187 (365)
495 2ius_A DNA translocase FTSK; n 59.2 5.4 0.00018 40.7 3.3 18 77-94 167-184 (512)
496 2rep_A Kinesin-like protein KI 59.1 4 0.00014 39.8 2.2 18 77-94 116-133 (376)
497 1e69_A Chromosome segregation 58.9 3.9 0.00013 39.0 2.0 52 248-299 224-280 (322)
498 2v1x_A ATP-dependent DNA helic 58.8 18 0.00063 37.5 7.4 79 239-318 84-175 (591)
499 3cmu_A Protein RECA, recombina 58.0 8.3 0.00028 45.9 4.9 32 76-107 1080-1115(2050)
500 2dyk_A GTP-binding protein; GT 57.9 6.6 0.00022 32.2 3.2 20 79-98 3-22 (161)
No 1
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=100.00 E-value=4.3e-60 Score=505.11 Aligned_cols=432 Identities=43% Similarity=0.758 Sum_probs=389.3
Q ss_pred cCCCCCchhccchHHHhcCCceEEEEccCCccHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeec
Q 010836 58 DFTDLTRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE 137 (499)
Q Consensus 58 ~~~~l~~~q~~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~ 137 (499)
.+.+++.+++|+|.++.+++++++++||||||||+.+++.+...++++|++|||+||.|+++++++.|+++++++|+...
T Consensus 136 ~i~dl~~p~~~~p~ar~l~rk~vlv~apTGSGKT~~al~~l~~~~~gl~l~PtR~LA~Qi~~~l~~~g~~v~lltG~~~~ 215 (677)
T 3rc3_A 136 KISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQKYFSAKSGVYCGPLKLLAHEIFEKSNAAGVPCDLVTGEERV 215 (677)
T ss_dssp HHTBCCCGGGGCHHHHTSCCEEEEEECCTTSSHHHHHHHHHHHSSSEEEEESSHHHHHHHHHHHHHTTCCEEEECSSCEE
T ss_pred HHhhccChhhhCHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcCCeEEEeCHHHHHHHHHHHHHhcCCcEEEEECCeeE
Confidence 35677888899999999999999999999999999999999998999999999999999999999999999999998876
Q ss_pred ccC----CCceEEEceeeccccCCccEEEEecCcccCCCCCChhHHHHHhccccccceEeecCCCchHHHHHHHHcCCeE
Q 010836 138 EVD----GAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDV 213 (499)
Q Consensus 138 ~~~----~~~~iv~T~e~~~~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 213 (499)
... ...++++|+++++....++++||||||++.+.++|+.+...+.++.+..+++++.+++.+.++.+....+..+
T Consensus 216 iv~TpGr~~~il~~T~e~~~l~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~ 295 (677)
T 3rc3_A 216 TVQPNGKQASHVSCTVEMCSVTTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEV 295 (677)
T ss_dssp CCSTTCCCCSEEEEEGGGCCSSSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCE
T ss_pred EecCCCcccceeEecHhHhhhcccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCce
Confidence 543 3679999999999999999999999999999889999999999999888999999999999999998888888
Q ss_pred EEEeeeecCCCCccccccccccccCCCCEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCcc
Q 010836 214 KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFD 293 (499)
Q Consensus 214 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~iv~~s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~ 293 (499)
.+..+.+..++......+..+....++++|||+++++++.+++.|++.+. .+.++||+|++++|..+++.|++++|.++
T Consensus 296 ~v~~~~r~~~l~~~~~~l~~l~~~~~g~iIf~~s~~~ie~la~~L~~~g~-~v~~lHG~L~~~~R~~~~~~F~~~~g~~~ 374 (677)
T 3rc3_A 296 EVRDYKRLTPISVLDHALESLDNLRPGDCIVCFSKNDIYSVSRQIEIRGL-ESAVIYGSLPPGTKLAQAKKFNDPNDPCK 374 (677)
T ss_dssp EEEECCCSSCEEECSSCCCSGGGCCTTEEEECSSHHHHHHHHHHHHHTTC-CCEEECTTSCHHHHHHHHHHHHCTTSSCC
T ss_pred EEEEeeecchHHHHHHHHHHHHhcCCCCEEEEcCHHHHHHHHHHHHhcCC-CeeeeeccCCHHHHHHHHHHHHccCCCeE
Confidence 88888888777776666666666778888877799999999999998766 99999999999999999999998667899
Q ss_pred EEEecchhhccccccccEEEEccccccc--Cc---cccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCHHHHHhhhC
Q 010836 294 VLVASDAIGMGLNLNISRIIFSTMKKFD--GV---ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHKSLL 368 (499)
Q Consensus 294 iLvaT~~~~~Gidipv~~VI~~~~~~~~--~~---~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~~~~~~~~~ 368 (499)
|||||+++++|||+++++||+++..+|+ +. +.+|.+.++|+||+|||||.|..+..|.|+.+++++...+++++.
T Consensus 375 VLVATdi~e~GlDi~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~~~~ 454 (677)
T 3rc3_A 375 ILVATDAIGMGLNLSIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILK 454 (677)
T ss_dssp EEEECGGGGSSCCCCBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHHHHH
T ss_pred EEEeCcHHHCCcCcCccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHHHHh
Confidence 9999999999999999999999998863 22 456999999999999999999754569999999988888999999
Q ss_pred CCCchhhhcCCCChHHHHHHHHhcCCCccHHHHHHHHHHhcccCCCccccChHHHHHHHHhhccCCCCHHHHHhhhcCCC
Q 010836 369 EPSPMLESAGLFPNFDLIYMYSRLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHEKYLFCISPV 448 (499)
Q Consensus 369 ~~~~~i~~~~l~~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~~~~~~~~p~ 448 (499)
...+++.+.++.|..++++.+....+...+.++++.+.....++..|++++++++..+++++++++|++.++|.||++|+
T Consensus 455 ~~~~~i~~~~l~p~~~~l~~~~~~l~~~~l~ell~~l~~~~~vd~~f~~~~l~~~~~la~~l~~~~L~~~~~~~f~~aP~ 534 (677)
T 3rc3_A 455 RPVDPIRAAGLHPTAEQIEMFAYHLPDATLSNLIDIFVDFSQVDGQYFVCNMDDFKFSAELIQHIPLSLRVRYVFCTAPI 534 (677)
T ss_dssp SCCCCCCCEEECCCHHHHHHHHHHSTTSCHHHHHHHHHHHCBCCTTEEECCCHHHHHHHHHTTTSCCCHHHHHHHHHSCC
T ss_pred cCcchhhhccCCChHHHHHHHhccCCcchHHHHHHHHHHhhcccchhhccchHHHHHHHHHHhhCCCCHHHHhheEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHHHhhCCccccccccccCCCCccccCC
Q 010836 449 DMNDDISSQGLTQFATNYSKKGIVQLREIFTPGLGSLRVAEF 490 (499)
Q Consensus 449 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (499)
+.+++..+++|.+|+++|++++.+++..+.....++.++|.+
T Consensus 535 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 576 (677)
T 3rc3_A 535 NKKQPFVCSSLLQFARQYSRNEPLTFAWLRRYIKWPLLPPKN 576 (677)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTCCCCHHHHHHHTTSSCCCCSS
T ss_pred CCCCHHHHHHHHHHHHHHHcCCCCCHHHHhhccCCCCCCCCC
Confidence 999999999999999999999999998776655455555543
No 2
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=3.7e-40 Score=360.13 Aligned_cols=382 Identities=19% Similarity=0.195 Sum_probs=270.0
Q ss_pred CcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-----cCCCEEEEccHHHHH
Q 010836 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLA 114 (499)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~-----~~~~~l~l~P~r~La 114 (499)
+++.+.+.++.. ||..++++|. +++.+. .++++++++||||||||++++.++. ++++++|++|+++||
T Consensus 15 l~~~~~~~l~~~-----g~~~l~~~Q~~~i~~~~-~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La 88 (715)
T 2va8_A 15 LPSNVIEIIKKR-----GIKKLNPPQTEAVKKGL-LEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALT 88 (715)
T ss_dssp SCHHHHHHHHTT-----SCCBCCHHHHHHHHTTT-TTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHH
T ss_pred CCHHHHHHHHhC-----CCCCCCHHHHHHHHHHh-cCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHH
Confidence 799999999988 9999999999 998722 5689999999999999999866553 467899999999999
Q ss_pred HHHHHHHHh---cCCceeEeeCCeeccc---CCCceEEEceeecc--------ccCCccEEEEecCcccCCCCCChhHHH
Q 010836 115 WEVAKRLNK---ANVSCDLITGQEREEV---DGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTR 180 (499)
Q Consensus 115 ~q~~~~l~~---~g~~~~~~~g~~~~~~---~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~~g~~~~~ 180 (499)
.|++++++. +|++++..+|+..... .+.+++++|++++. ++.++++|||||+|++.+..+|..+..
T Consensus 89 ~q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~ 168 (715)
T 2va8_A 89 NEKYLTFKDWELIGFKVAMTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVES 168 (715)
T ss_dssp HHHHHHHGGGGGGTCCEEECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHH
T ss_pred HHHHHHHHHhhcCCCEEEEEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHH
Confidence 999999853 4889999999755432 26789999997763 368899999999999987777777665
Q ss_pred HHhccccccceEeecCCCchHHHHHHHHcCCeEEEEeeeecCCCC----------------cc----------ccccccc
Q 010836 181 ALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV----------------PL----------NVPLGSF 234 (499)
Q Consensus 181 ~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------------~~----------~~~l~~l 234 (499)
.+..+. ..++++.+++.+....+..+.+..... ...++.++. .. ......+
T Consensus 169 i~~~~~--~~~ii~lSATl~n~~~~~~~l~~~~~~-~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (715)
T 2va8_A 169 VTIRAK--RRNLLALSATISNYKQIAKWLGAEPVA-TNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYT 245 (715)
T ss_dssp HHHHHH--TSEEEEEESCCTTHHHHHHHHTCEEEE-CCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHH
T ss_pred HHHhcc--cCcEEEEcCCCCCHHHHHHHhCCCccC-CCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHH
Confidence 554444 678888888888778888887653211 111111110 00 0001111
Q ss_pred cc--cCCCCEEEEe-eHHHHHHHHHHHHHcCC-----------------------------------CeEEEEcCCCCHH
Q 010836 235 SN--IQTGDCIVTF-SRHAIYRLKKAIESRGK-----------------------------------HLCSIVYGSLPPE 276 (499)
Q Consensus 235 ~~--~~~~~~iv~~-s~~~~~~l~~~L~~~~~-----------------------------------~~v~~~hg~l~~~ 276 (499)
.+ ...++++||+ ++++++.+++.|.+... ..+.++||+|+++
T Consensus 246 ~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~ 325 (715)
T 2va8_A 246 LDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKA 325 (715)
T ss_dssp HHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHH
T ss_pred HHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHH
Confidence 11 1457788888 89999999999986432 2499999999999
Q ss_pred HHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEccccccc---CccccccChhhHHhhhccCCCCCCCCCcEEE
Q 010836 277 TRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFD---GVELRDLTVPEVKQIAGRAGRYGSKFPVGEV 352 (499)
Q Consensus 277 ~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~---~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~ 352 (499)
+|..+++.|++ |.++|||||+++++|||+| +++||+ +..+|| +....|.|..+|.||+|||||.|.+ ..|.|
T Consensus 326 ~r~~v~~~f~~--g~~~vlvaT~~l~~Gidip~~~~VI~-~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~g~~-~~G~~ 401 (715)
T 2va8_A 326 LRDLIEEGFRQ--RKIKVIVATPTLAAGVNLPARTVIIG-DIYRFNKKIAGYYDEIPIMEYKQMSGRAGRPGFD-QIGES 401 (715)
T ss_dssp HHHHHHHHHHT--TCSCEEEECGGGGGSSCCCBSEEEEC-CC--------------CHHHHHHHHTTBCCTTTC-SCEEE
T ss_pred HHHHHHHHHHc--CCCeEEEEChHHhcccCCCceEEEEe-CCeeccccCCCCCCcCCHHHHHHHhhhcCCCCCC-CCceE
Confidence 99999999999 9999999999999999998 666665 355566 3345689999999999999999953 44999
Q ss_pred EEEcCCCH---HHHHhhhCCCCchhhhcCCCCh------HHHHH------------HHHh------cCCCccHHHHHHHH
Q 010836 353 TCLDSEDL---PLLHKSLLEPSPMLESAGLFPN------FDLIY------------MYSR------LHPDSSLYGILEHF 405 (499)
Q Consensus 353 ~~~~~~~~---~~~~~~~~~~~~~i~~~~l~~~------~~~l~------------~~~~------~~~~~~l~~~l~~~ 405 (499)
+.++.++. ..+++++....+ ..+..+... ...+. .|.. .++...+..+++.+
T Consensus 402 ~~l~~~~~~~~~~~~~~l~~~~e-~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al~~L 480 (715)
T 2va8_A 402 IVVVRDKEDVDRVFKKYVLSDVE-PIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWL 480 (715)
T ss_dssp EEECSCGGGHHHHHHHTTSSCCC-CCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHHHHH
T ss_pred EEEeCCchHHHHHHHHHHcCCCC-CceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcchHHHHHHHHHH
Confidence 99987653 234556654443 444455441 11111 1111 11123467777777
Q ss_pred HHhcccCCCccccChHHHHHHHHhhccCCCCHHH
Q 010836 406 LENAKLSENYFFANCEEVLKVATVIDQLPLRLHE 439 (499)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~ 439 (499)
.+...++... +....+.+|..++++|+++..
T Consensus 481 ~~~g~i~~~~---~~~~~t~lG~~~~~~~~~~~~ 511 (715)
T 2va8_A 481 LEHSFIKEEG---NTFALTNFGKRVADLYINPFT 511 (715)
T ss_dssp HHTTSEEECS---SEEEECHHHHHHHHHTCCHHH
T ss_pred HHCcCEeecC---CeEeeChHHHHHHHHcCCHhH
Confidence 7777665321 112578899999999988876
No 3
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=6.2e-40 Score=337.49 Aligned_cols=295 Identities=18% Similarity=0.152 Sum_probs=220.9
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----c--------CCCEEE
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S--------SSSGIY 106 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~----~--------~~~~l~ 106 (499)
.+++.+.+.++.. ||..|+++|+ ++|.+ +++++++++||||||||++++.++. . +.++||
T Consensus 62 ~l~~~l~~~l~~~-----g~~~pt~iQ~~ai~~i--~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~li 134 (434)
T 2db3_A 62 DLRDIIIDNVNKS-----GYKIPTPIQKCSIPVI--SSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVI 134 (434)
T ss_dssp CCCHHHHHHHHHT-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEE
T ss_pred CCCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--hcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEE
Confidence 5889999999988 9999999999 99998 6699999999999999999755443 2 347899
Q ss_pred EccHHHHHHHHHHHHHhc----CCceeEeeCCeec------ccCCCceEEEceeecc--------ccCCccEEEEecCcc
Q 010836 107 CGPLRLLAWEVAKRLNKA----NVSCDLITGQERE------EVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQM 168 (499)
Q Consensus 107 l~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~------~~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~ 168 (499)
++|||+|+.|+++.++++ ++++..++|+... ...+.+++++||+.+. .+.+++++|+||||+
T Consensus 135 l~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~ 214 (434)
T 2db3_A 135 VSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADR 214 (434)
T ss_dssp ECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHH
T ss_pred EecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhh
Confidence 999999999999999875 4677778876542 1246789999996552 257899999999999
Q ss_pred cCCCCCChhHHHHHhccc-cccceEeecCCCc-hHHHHHHHHc-CCeEEEEeee------------ecCCCCcccccc-c
Q 010836 169 LGCKTRGFSFTRALLGIC-ANELHLCGDPAAV-PLIQQILQVT-GDDVKVQSYE------------RLSPLVPLNVPL-G 232 (499)
Q Consensus 169 ~~~~~~g~~~~~~ll~l~-~~~~~~~~~~~~~-~~~~~l~~~~-~~~~~~~~~~------------~~~~~~~~~~~l-~ 232 (499)
+.+..++..+..++..+. ....+++..+++. +.+..+.... .....+.... ...........+ .
T Consensus 215 ~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~~~k~~~l~~ 294 (434)
T 2db3_A 215 MLDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNKYAKRSKLIE 294 (434)
T ss_dssp HTSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCGGGHHHHHHH
T ss_pred hhccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCcHHHHHHHHH
Confidence 997643344444444332 2334445545444 4445555432 2222211100 000000001111 1
Q ss_pred cccccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-cc
Q 010836 233 SFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-IS 310 (499)
Q Consensus 233 ~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~ 310 (499)
.+... ...++||+ +++.++.+++.|.+.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| ++
T Consensus 295 ~l~~~-~~~~lVF~~t~~~a~~l~~~L~~~~~-~~~~lhg~~~~~~R~~~l~~F~~--g~~~vLvaT~v~~rGlDi~~v~ 370 (434)
T 2db3_A 295 ILSEQ-ADGTIVFVETKRGADFLASFLSEKEF-PTTSIHGDRLQSQREQALRDFKN--GSMKVLIATSVASRGLDIKNIK 370 (434)
T ss_dssp HHHHC-CTTEEEECSSHHHHHHHHHHHHHTTC-CEEEESTTSCHHHHHHHHHHHHT--SSCSEEEECGGGTSSCCCTTCC
T ss_pred HHHhC-CCCEEEEEeCcHHHHHHHHHHHhCCC-CEEEEeCCCCHHHHHHHHHHHHc--CCCcEEEEchhhhCCCCcccCC
Confidence 12222 33477777 89999999999998876 89999999999999999999999 9999999999999999997 99
Q ss_pred EEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcC
Q 010836 311 RIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (499)
Q Consensus 311 ~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~ 357 (499)
+||+++. |.+..+|+||+||+||.|.. |.++.+..
T Consensus 371 ~VI~~d~---------p~~~~~y~qriGR~gR~g~~---G~a~~~~~ 405 (434)
T 2db3_A 371 HVINYDM---------PSKIDDYVHRIGRTGRVGNN---GRATSFFD 405 (434)
T ss_dssp EEEESSC---------CSSHHHHHHHHTTSSCTTCC---EEEEEEEC
T ss_pred EEEEECC---------CCCHHHHHHHhcccccCCCC---CEEEEEEe
Confidence 9999999 77999999999999999987 99888776
No 4
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=8e-40 Score=357.44 Aligned_cols=383 Identities=19% Similarity=0.192 Sum_probs=273.4
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchH-HHhcCCceEEEEccCCccHHHHHHHHHH-----cCCCEEEEccHHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPL-ARKKVRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRL 112 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~-~~~~~~~~vli~apTGsGKT~~~l~~l~-----~~~~~l~l~P~r~ 112 (499)
.+++.+.+.++.. |+..|+++|. +++. + .++++++++||||||||+++..++. ++++++|++|+++
T Consensus 7 ~l~~~~~~~l~~~-----g~~~l~~~Q~~~i~~~~--~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~ra 79 (720)
T 2zj8_A 7 RVDERIKSTLKER-----GIESFYPPQAEALKSGI--LEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKA 79 (720)
T ss_dssp CSCHHHHHHHHHT-----TCCBCCHHHHHHHTTTG--GGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGG
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHHh--cCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHH
Confidence 3889999999888 9999999999 8887 5 4589999999999999999855443 4678999999999
Q ss_pred HHHHHHHHHHh---cCCceeEeeCCeecc---cCCCceEEEceeecc--------ccCCccEEEEecCcccCCCCCChhH
Q 010836 113 LAWEVAKRLNK---ANVSCDLITGQEREE---VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSF 178 (499)
Q Consensus 113 La~q~~~~l~~---~g~~~~~~~g~~~~~---~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~~g~~~ 178 (499)
|+.|+++++++ +|++++.++|+.... ..+..++++|++++. ++.+++++||||+|++.+.+||..+
T Consensus 80 La~q~~~~~~~l~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~ 159 (720)
T 2zj8_A 80 LAEEKFQEFQDWEKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGSRDRGATL 159 (720)
T ss_dssp GHHHHHHHTGGGGGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHH
T ss_pred HHHHHHHHHHHHHhcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCCCcccHHH
Confidence 99999999964 488999999965432 236789999998773 3578999999999999987788776
Q ss_pred HHHHhccccccceEeecCCCchHHHHHHHHcCCeEEEEeeeecCCCC----------c-------cccccccccc--cCC
Q 010836 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLV----------P-------LNVPLGSFSN--IQT 239 (499)
Q Consensus 179 ~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------~-------~~~~l~~l~~--~~~ 239 (499)
...+..+.. ..++++.+++.+....+..+.+.... ....++.++. . .......+.+ ...
T Consensus 160 ~~ll~~l~~-~~~ii~lSATl~n~~~~~~~l~~~~~-~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (720)
T 2zj8_A 160 EVILAHMLG-KAQIIGLSATIGNPEELAEWLNAELI-VSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRKK 237 (720)
T ss_dssp HHHHHHHBT-TBEEEEEECCCSCHHHHHHHTTEEEE-ECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHHTT
T ss_pred HHHHHHhhc-CCeEEEEcCCcCCHHHHHHHhCCccc-CCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHhCC
Confidence 655544443 78889999998878888888764321 1111111110 0 0111111111 145
Q ss_pred CCEEEEe-eHHHHHHHHHHHHHcCC--------------------------------CeEEEEcCCCCHHHHHHHHHHhc
Q 010836 240 GDCIVTF-SRHAIYRLKKAIESRGK--------------------------------HLCSIVYGSLPPETRTRQATRFN 286 (499)
Q Consensus 240 ~~~iv~~-s~~~~~~l~~~L~~~~~--------------------------------~~v~~~hg~l~~~~R~~~~~~f~ 286 (499)
++++||+ ++++++.+++.|.+... ..+.++||+|++++|..+++.|+
T Consensus 238 ~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~ 317 (720)
T 2zj8_A 238 KGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFR 317 (720)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHH
T ss_pred CCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 7788887 89999999999875311 14999999999999999999999
Q ss_pred CCCCCccEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCH--HHH
Q 010836 287 DASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL--PLL 363 (499)
Q Consensus 287 ~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~--~~~ 363 (499)
+ |.++|||||+++++|+|+| +++|| .+..+||+.+..|.+..+|+||+|||||.|.+ ..|.|+.++.++. ..+
T Consensus 318 ~--g~~~vlvaT~~l~~Gvdip~~~~VI-~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~-~~G~~~~l~~~~~~~~~~ 393 (720)
T 2zj8_A 318 K--GIIKAVVATPTLSAGINTPAFRVII-RDIWRYSDFGMERIPIIEVHQMLGRAGRPKYD-EVGEGIIVSTSDDPREVM 393 (720)
T ss_dssp T--TSSCEEEECSTTGGGCCCCBSEEEE-CCSEECCSSSCEECCHHHHHHHHTTBCCTTTC-SEEEEEEECSSSCHHHHH
T ss_pred C--CCCeEEEECcHhhccCCCCceEEEE-cCCeeecCCCCccCCHHHHHHHHhhcCCCCCC-CCceEEEEecCccHHHHH
Confidence 9 9999999999999999998 55555 45566775556799999999999999999853 4599988876653 235
Q ss_pred HhhhCCCCchhhhcCCCC---hHHHHHH---------------H-----Hh-cCCC-----ccHHHHHHHHHHhcccC-C
Q 010836 364 HKSLLEPSPMLESAGLFP---NFDLIYM---------------Y-----SR-LHPD-----SSLYGILEHFLENAKLS-E 413 (499)
Q Consensus 364 ~~~~~~~~~~i~~~~l~~---~~~~l~~---------------~-----~~-~~~~-----~~l~~~l~~~~~~~~~~-~ 413 (499)
++++....+++.... .+ ...++.. | .. ..+. ..+..+++.+.+...++ .
T Consensus 394 ~~~~~~~~~~i~s~l-~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~ 472 (720)
T 2zj8_A 394 NHYIFGKPEKLFSQL-SNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEIS 472 (720)
T ss_dssp HHHTTSCCCCCCCCT-TCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHhcCCCCCcEeec-CchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccchHHHHHHHHHHHHHHHHCCCeeEC
Confidence 567766665554332 22 1111111 1 00 0111 23566666666665544 2
Q ss_pred CccccChHHHHHHHHhhccCCCCHHH
Q 010836 414 NYFFANCEEVLKVATVIDQLPLRLHE 439 (499)
Q Consensus 414 ~~~~~~~~~~~~l~~~l~~~~l~~~~ 439 (499)
.. +.-..+.+|..++++|+++..
T Consensus 473 ~~---~~~~~t~lG~~~~~~~~~~~~ 495 (720)
T 2zj8_A 473 LE---DKIRPLSLGIRTAKLYIDPYT 495 (720)
T ss_dssp TT---SCEEECHHHHHHHHHTCCHHH
T ss_pred CC---CcEeeChHHHHHHHHcCCHHH
Confidence 10 011467788888888877655
No 5
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1e-39 Score=355.67 Aligned_cols=383 Identities=20% Similarity=0.235 Sum_probs=273.1
Q ss_pred CcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHH
Q 010836 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAW 115 (499)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l----~~~~~~l~l~P~r~La~ 115 (499)
+++.+.+.++.. ||..|+++|+ +++.+ .++++++++||||||||++++.++ .++++++|++|+++|+.
T Consensus 10 l~~~~~~~l~~~-----g~~~l~~~Q~~~i~~i--~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~ 82 (702)
T 2p6r_A 10 ISSYAVGILKEE-----GIEELFPPQAEAVEKV--FSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAG 82 (702)
T ss_dssp HHHHHHHHHHCC--------CCCCCCHHHHHHH--TTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHH
T ss_pred cCHHHHHHHHhC-----CCCCCCHHHHHHHHHH--hCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHH
Confidence 677888899887 9999999999 99987 569999999999999999986555 35789999999999999
Q ss_pred HHHHHHHh---cCCceeEeeCCeeccc---CCCceEEEceeecc--------ccCCccEEEEecCcccCCCCCChhHHHH
Q 010836 116 EVAKRLNK---ANVSCDLITGQEREEV---DGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRA 181 (499)
Q Consensus 116 q~~~~l~~---~g~~~~~~~g~~~~~~---~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~~g~~~~~~ 181 (499)
|++++++. +|++++..+|+..... .+.+++++||+++. ++.+++++||||+|++.+..||..+...
T Consensus 83 q~~~~~~~~~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~l 162 (702)
T 2p6r_A 83 EKYESFKKWEKIGLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEIL 162 (702)
T ss_dssp HHHHHHTTTTTTTCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHH
Confidence 99999854 4789999999765443 37889999997763 3578999999999999987778776554
Q ss_pred Hhccc--cccceEeecCCCchHHHHHHHHcCCeEEEEeeeecCCCCc----------cc------c---ccccccc--cC
Q 010836 182 LLGIC--ANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERLSPLVP----------LN------V---PLGSFSN--IQ 238 (499)
Q Consensus 182 ll~l~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----------~~------~---~l~~l~~--~~ 238 (499)
+..+. ....++++.+++.+....+..+.+..... ...++.++.. .. . ....+.+ ..
T Consensus 163 l~~l~~~~~~~~ii~lSATl~n~~~~~~~l~~~~~~-~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (702)
T 2p6r_A 163 VTKMRRMNKALRVIGLSATAPNVTEIAEWLDADYYV-SDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVAE 241 (702)
T ss_dssp HHHHHHHCTTCEEEEEECCCTTHHHHHHHTTCEEEE-CCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHHT
T ss_pred HHHHHhcCcCceEEEECCCcCCHHHHHHHhCCCccc-CCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHhc
Confidence 43332 34678899999988888888888754321 1112222111 00 0 0011111 14
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcC-----------------------------CCeEEEEcCCCCHHHHHHHHHHhcCC
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRG-----------------------------KHLCSIVYGSLPPETRTRQATRFNDA 288 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~-----------------------------~~~v~~~hg~l~~~~R~~~~~~f~~~ 288 (499)
.++++||+ ++++++.+++.|.+.. ...+.++||+|++++|..+++.|++
T Consensus 242 ~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~- 320 (702)
T 2p6r_A 242 NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR- 320 (702)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHT-
T ss_pred CCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHC-
Confidence 57788888 8999999999887531 1258899999999999999999999
Q ss_pred CCCccEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCH-H-HHHh
Q 010836 289 SSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL-P-LLHK 365 (499)
Q Consensus 289 ~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~-~-~~~~ 365 (499)
|.++|||||+++++|+|+| +++||+ +..+||+. ..|.|..+|.||+|||||.|.+ ..|.|+.++.++. . .+++
T Consensus 321 -g~~~vlvaT~~l~~Gidip~~~~VI~-~~~~yd~~-~~~~s~~~~~Qr~GRaGR~g~~-~~G~~~~l~~~~~~~~~~~~ 396 (702)
T 2p6r_A 321 -GNIKVVVATPTLAAGVNLPARRVIVR-SLYRFDGY-SKRIKVSEYKQMAGRAGRPGMD-ERGEAIIIVGKRDREIAVKR 396 (702)
T ss_dssp -TSCCEEEECSTTTSSSCCCBSEEEEC-CSEEESSS-EEECCHHHHHHHHTTBSCTTTC-SCEEEEEECCGGGHHHHHHT
T ss_pred -CCCeEEEECcHHhccCCCCceEEEEc-CceeeCCC-CCcCCHHHHHHHhhhcCCCCCC-CCceEEEEecCccHHHHHHH
Confidence 9999999999999999998 555554 46667633 5689999999999999999953 4599998877653 2 2334
Q ss_pred hhCCCCchhhhcCCCCh---HHHHH---------------HHHh---------cCCCccHHHHHHHHHHhcccCCCcccc
Q 010836 366 SLLEPSPMLESAGLFPN---FDLIY---------------MYSR---------LHPDSSLYGILEHFLENAKLSENYFFA 418 (499)
Q Consensus 366 ~~~~~~~~i~~~~l~~~---~~~l~---------------~~~~---------~~~~~~l~~~l~~~~~~~~~~~~~~~~ 418 (499)
++....+ ..+..+... .+++. .|.. .+....+..+++.+.+...++..
T Consensus 397 ~l~~~~e-~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~---- 471 (702)
T 2p6r_A 397 YIFGEPE-RITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEA---- 471 (702)
T ss_dssp TTSSCCC-CCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEES----
T ss_pred HhcCCCC-CceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCeeEC----
Confidence 5544433 333444431 11111 1110 12234566677777776655433
Q ss_pred ChHHHHHHHHhhccCCCCHHHHH
Q 010836 419 NCEEVLKVATVIDQLPLRLHEKY 441 (499)
Q Consensus 419 ~~~~~~~l~~~l~~~~l~~~~~~ 441 (499)
+....+.+|..++.+|++...-.
T Consensus 472 ~~~~~t~lG~~~~~~~~~~~~~~ 494 (702)
T 2p6r_A 472 AHLAPTKLGSLVSRLYIDPLTGF 494 (702)
T ss_dssp SSEEECHHHHHHHHTTCCHHHHH
T ss_pred CeeccChHHHHHHHHhCCHHHHH
Confidence 12357889999999998887733
No 6
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=9.6e-39 Score=370.79 Aligned_cols=325 Identities=21% Similarity=0.255 Sum_probs=246.7
Q ss_pred CccCCCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----Hc----------
Q 010836 36 GAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ES---------- 100 (499)
Q Consensus 36 ~~~~~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l----~~---------- 100 (499)
..+..|++..+..+. ||+.++++|+ ++|.+. ..+++++++||||||||++|..++ .+
T Consensus 61 ~~i~~Lp~~~~~~f~-------g~~~ln~iQs~~~~~al-~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~ 132 (1724)
T 4f92_B 61 LPVEKLPKYAQAGFE-------GFKTLNRIQSKLYRAAL-ETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINV 132 (1724)
T ss_dssp CBTTTSCGGGSTTCT-------TCSBCCHHHHHTHHHHH-TCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCT
T ss_pred cchHhcCHHHHHhcC-------CCCCCCHHHHHHHHHHH-cCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccC
Confidence 344556655444442 7899999999 999885 468899999999999999985444 22
Q ss_pred -CCCEEEEccHHHHHHHHHHHHHh----cCCceeEeeCCeecc---cCCCceEEEceeeccc----------cCCccEEE
Q 010836 101 -SSSGIYCGPLRLLAWEVAKRLNK----ANVSCDLITGQEREE---VDGAKHRAVTVEMADV----------VSDYDCAV 162 (499)
Q Consensus 101 -~~~~l~l~P~r~La~q~~~~l~~----~g~~~~~~~g~~~~~---~~~~~~iv~T~e~~~~----------l~~~~~iV 162 (499)
+.++||++|+++||.|+++.|.+ +|++|+.++|+.... ...++++|+|||+++. ++.+++||
T Consensus 133 ~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vI 212 (1724)
T 4f92_B 133 DDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLII 212 (1724)
T ss_dssp TSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEE
Confidence 34789999999999999988864 589999999986543 2367899999987753 46799999
Q ss_pred EecCcccCCCCCChhHHHHHhc------cccccceEeecCCCchHHHHHHHHcCCe-----EEEEeeeecCCCCccc---
Q 010836 163 IDEIQMLGCKTRGFSFTRALLG------ICANELHLCGDPAAVPLIQQILQVTGDD-----VKVQSYERLSPLVPLN--- 228 (499)
Q Consensus 163 iDEah~~~~~~~g~~~~~~ll~------l~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~--- 228 (499)
|||+|.+.+ +||..+...+.. .....+++++.++++++..+++.|.+.. ..+....|+.++....
T Consensus 213 iDEvH~l~d-~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~ 291 (1724)
T 4f92_B 213 LDEIHLLHD-DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVGI 291 (1724)
T ss_dssp ETTGGGGGS-TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCEE
T ss_pred EecchhcCC-ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEecc
Confidence 999999987 799988655432 3356789999999999999999998753 2233334444443210
Q ss_pred ---c----------cc-cccc-ccCCCCEEEEe-eHHHHHHHHHHHHHc-------------------------------
Q 010836 229 ---V----------PL-GSFS-NIQTGDCIVTF-SRHAIYRLKKAIESR------------------------------- 261 (499)
Q Consensus 229 ---~----------~l-~~l~-~~~~~~~iv~~-s~~~~~~l~~~L~~~------------------------------- 261 (499)
. .+ ..+. ...++.++||+ |++.++.+++.|.+.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 371 (1724)
T 4f92_B 292 TEKKAIKRFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNL 371 (1724)
T ss_dssp CCCCHHHHHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTH
T ss_pred CCcchhhhhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccH
Confidence 0 00 1111 12456677777 898888888877542
Q ss_pred -----CCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccccccccEEEEcccccccCc--cccccChhhHH
Q 010836 262 -----GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV--ELRDLTVPEVK 334 (499)
Q Consensus 262 -----~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidipv~~VI~~~~~~~~~~--~~~p~s~~~~~ 334 (499)
...++++|||+|++++|..+++.|++ |.++|||||+++++|||+|...||+.+...|||. +..|++..+|.
T Consensus 372 ~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~--G~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~~~~~~~~ls~~~~~ 449 (1724)
T 4f92_B 372 ELKDLLPYGFAIHHAGMTRVDRTLVEDLFAD--KHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWTELGALDIL 449 (1724)
T ss_dssp HHHHHTTTTEEEECSSSCTHHHHHHHHHHHT--TCCCEEEECHHHHHHSCCCBSEEEEECCEEEETTTTEEEECCHHHHH
T ss_pred HHHHHhhcCEEEEcCCCCHHHHHHHHHHHHC--CCCeEEEEcchhHhhCCCCCceEEEeCCEEecCcCCCcccCCHHHHH
Confidence 12259999999999999999999999 9999999999999999999889998888889886 45789999999
Q ss_pred hhhccCCCCCCCCCcEEEEEEcC-CCHHHHHhhhCCCCc
Q 010836 335 QIAGRAGRYGSKFPVGEVTCLDS-EDLPLLHKSLLEPSP 372 (499)
Q Consensus 335 Qr~GRagR~g~~~~~g~~~~~~~-~~~~~~~~~~~~~~~ 372 (499)
||+|||||.|.+ ..|.++.+.. ++...+..++....+
T Consensus 450 Qm~GRAGR~g~d-~~G~~ii~~~~~~~~~~~~ll~~~~p 487 (1724)
T 4f92_B 450 QMLGRAGRPQYD-TKGEGILITSHGELQYYLSLLNQQLP 487 (1724)
T ss_dssp HHHTTBSCTTTC-SCEEEEEEEESTTCCHHHHHTTTCSC
T ss_pred HhhhhccCCCCC-CccEEEEEecchhHHHHHHHHcCCCc
Confidence 999999999875 4577665544 344666677765543
No 7
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=6.3e-38 Score=332.34 Aligned_cols=338 Identities=17% Similarity=0.183 Sum_probs=240.6
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHH-HHHHcCCCEEEEccHHHHHHHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL-SRLESSSSGIYCGPLRLLAWEV 117 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l-~~l~~~~~~l~l~P~r~La~q~ 117 (499)
.+++.+.+.++.. +||..|+++|+ +++.+ ++++++++.+|||+|||++|. ..+...+.+||++|+++|+.|+
T Consensus 27 ~l~~~l~~~L~~~----fg~~~~rp~Q~~~i~~i--l~g~d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~~q~ 100 (591)
T 2v1x_A 27 PWSGKVKDILQNV----FKLEKFRPLQLETINVT--MAGKEVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQ 100 (591)
T ss_dssp TTHHHHHHHHHHT----SCCCSCCTTHHHHHHHH--HTTCCEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHHHHH
T ss_pred CCCHHHHHHHHHH----hCCCCCCHHHHHHHHHH--HcCCCEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHHHHHH
Confidence 3778888888874 49999999999 99998 569999999999999999985 4455667899999999999999
Q ss_pred HHHHHhcCCceeEeeCCeecc------------cCCCceEEEceeecc----c---------cCCccEEEEecCcccCCC
Q 010836 118 AKRLNKANVSCDLITGQEREE------------VDGAKHRAVTVEMAD----V---------VSDYDCAVIDEIQMLGCK 172 (499)
Q Consensus 118 ~~~l~~~g~~~~~~~g~~~~~------------~~~~~~iv~T~e~~~----~---------l~~~~~iViDEah~~~~~ 172 (499)
++.+.++|+++..++|+.... .....++++||+.+. + +.+++++||||||+++
T Consensus 101 ~~~l~~~gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is-- 178 (591)
T 2v1x_A 101 LMVLKQLGISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCS-- 178 (591)
T ss_dssp HHHHHHHTCCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGS--
T ss_pred HHHHHhcCCcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECccccc--
Confidence 999999999999998865321 346789999997652 1 3589999999999998
Q ss_pred CCChhHHH------HHhccccccceEeecCCCc--hHHHHHHHHcCCe--EEEE-eeeecC------CCC-cccc---cc
Q 010836 173 TRGFSFTR------ALLGICANELHLCGDPAAV--PLIQQILQVTGDD--VKVQ-SYERLS------PLV-PLNV---PL 231 (499)
Q Consensus 173 ~~g~~~~~------~ll~l~~~~~~~~~~~~~~--~~~~~l~~~~~~~--~~~~-~~~~~~------~~~-~~~~---~l 231 (499)
+||+.+.. .+....+ ..++++.+++. .....+....+.. ..+. .+.+.. +.. .... .+
T Consensus 179 ~~g~dfr~~~~~l~~l~~~~~-~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l 257 (591)
T 2v1x_A 179 QWGHDFRPDYKALGILKRQFP-NASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDI 257 (591)
T ss_dssp TTCTTCCGGGGGGGHHHHHCT-TSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHhCC-CCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHH
Confidence 45643221 1111111 23344444433 3334444444321 1111 111110 000 0001 11
Q ss_pred -cccccc-CCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc
Q 010836 232 -GSFSNI-QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN 308 (499)
Q Consensus 232 -~~l~~~-~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip 308 (499)
..+... ..+..|||+ |++.++++++.|.+.+. .+..+||+|++++|..+++.|++ |+.+|||||+++++|||+|
T Consensus 258 ~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~-~~~~~h~~l~~~~R~~~~~~F~~--g~~~VlVAT~a~~~GID~p 334 (591)
T 2v1x_A 258 VKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGI-HAGAYHANLEPEDKTTVHRKWSA--NEIQVVVATVAFGMGIDKP 334 (591)
T ss_dssp HHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHT--TSSSEEEECTTSCTTCCCS
T ss_pred HHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCC-CEEEecCCCCHHHHHHHHHHHHc--CCCeEEEEechhhcCCCcc
Confidence 122222 344566666 99999999999998877 99999999999999999999999 9999999999999999997
Q ss_pred -ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC-HHHHHhhhCCCCchhhhcCCCChHHHH
Q 010836 309 -ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED-LPLLHKSLLEPSPMLESAGLFPNFDLI 386 (499)
Q Consensus 309 -v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~i~~~~l~~~~~~l 386 (499)
|++||+++. |.|..+|+||+|||||.|.. |.|+.++... ...+..++....... .....+
T Consensus 335 ~V~~VI~~~~---------p~s~~~y~Qr~GRaGR~G~~---g~~i~l~~~~D~~~~~~~~~~~~~~~------~~l~~~ 396 (591)
T 2v1x_A 335 DVRFVIHHSM---------SKSMENYYQESGRAGRDDMK---ADCILYYGFGDIFRISSMVVMENVGQ------QKLYEM 396 (591)
T ss_dssp CEEEEEESSC---------CSSHHHHHHHHTTSCTTSSC---EEEEEEECHHHHHHHHHHTTTSTTHH------HHHHHH
T ss_pred cccEEEEeCC---------CCCHHHHHHHhccCCcCCCC---ceEEEEEChHHHHHHHHHHhhhhhhH------HHHHHH
Confidence 999999999 66999999999999999987 9998877543 345555655432221 123344
Q ss_pred HHHHhcCCCccHHHHHHHHHH
Q 010836 387 YMYSRLHPDSSLYGILEHFLE 407 (499)
Q Consensus 387 ~~~~~~~~~~~l~~~l~~~~~ 407 (499)
..++.....+.-..+++.|.+
T Consensus 397 ~~~~~~~~~Crr~~ll~~f~e 417 (591)
T 2v1x_A 397 VSYCQNISKCRRVLMAQHFDE 417 (591)
T ss_dssp HHHHTCSSSCHHHHHHHHHTC
T ss_pred HHHHhcccccHHHHHHHHcCC
Confidence 455554555655666666644
No 8
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=1.6e-38 Score=333.38 Aligned_cols=306 Identities=18% Similarity=0.224 Sum_probs=226.0
Q ss_pred CcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHH-HHHHcCCCEEEEccHHHHHHHHH
Q 010836 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL-SRLESSSSGIYCGPLRLLAWEVA 118 (499)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l-~~l~~~~~~l~l~P~r~La~q~~ 118 (499)
+++.+.+.+++. +|+..+++.|+ +++.+ ++++++++++|||+|||++|. ..+...+.+||++|+++|+.|+.
T Consensus 9 L~~~~~~~l~~~----~g~~~~r~~Q~~~i~~i--l~g~d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~~ 82 (523)
T 1oyw_A 9 LESGAKQVLQET----FGYQQFRPGQEEIIDTV--LSGRDCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQV 82 (523)
T ss_dssp HHHHHHHHHHHT----TCCSSCCTTHHHHHHHH--HTTCCEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHHH
T ss_pred CCHHHHHHHHHH----hCCCCCCHHHHHHHHHH--HcCCCEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHHH
Confidence 567788888763 49999999999 99988 568999999999999999984 44556788999999999999999
Q ss_pred HHHHhcCCceeEeeCCeecc----------cCCCceEEEceeeccc--------cCCccEEEEecCcccCCCCCChhHHH
Q 010836 119 KRLNKANVSCDLITGQEREE----------VDGAKHRAVTVEMADV--------VSDYDCAVIDEIQMLGCKTRGFSFTR 180 (499)
Q Consensus 119 ~~l~~~g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~~--------l~~~~~iViDEah~~~~~~~g~~~~~ 180 (499)
+.+.++|+++..++|..... .....++++|||.+.. ..+++++||||||+++ +||+.+..
T Consensus 83 ~~l~~~gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~--~~g~~fr~ 160 (523)
T 1oyw_A 83 DQLQANGVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCIS--QWGHDFRP 160 (523)
T ss_dssp HHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGC--TTSSCCCH
T ss_pred HHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccC--cCCCccHH
Confidence 99999999999888864321 2357899999987631 2689999999999998 55654321
Q ss_pred H---Hhccc--cccceEeecCCC--chHHHHHHHHcCC---eEEEEeeeecCC-------CCccccccccccccCCCCEE
Q 010836 181 A---LLGIC--ANELHLCGDPAA--VPLIQQILQVTGD---DVKVQSYERLSP-------LVPLNVPLGSFSNIQTGDCI 243 (499)
Q Consensus 181 ~---ll~l~--~~~~~~~~~~~~--~~~~~~l~~~~~~---~~~~~~~~~~~~-------~~~~~~~l~~l~~~~~~~~i 243 (499)
. +..+. .....+++.+++ .....++....+. ...+..+.+... .......+..+.....+..|
T Consensus 161 ~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~l~~~l~~~~~~~~I 240 (523)
T 1oyw_A 161 EYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGI 240 (523)
T ss_dssp HHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTTEEEEEEECSSHHHHHHHHHHHTTTCCEE
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCceEEEEEeCCCHHHHHHHHHHhcCCCcEE
Confidence 1 11111 012333444433 3344556555432 122211111110 00001111222333455677
Q ss_pred EEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEccccccc
Q 010836 244 VTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFD 321 (499)
Q Consensus 244 v~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~ 321 (499)
||+ |++.++.+++.|++.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|||+| +++||+++.
T Consensus 241 Vf~~sr~~~e~l~~~L~~~g~-~~~~~h~~l~~~~R~~~~~~f~~--g~~~vlVaT~a~~~GiD~p~v~~VI~~~~---- 313 (523)
T 1oyw_A 241 IYCNSRAKVEDTAARLQSKGI-SAAAYHAGLENNVRADVQEKFQR--DDLQIVVATVAFGMGINKPNVRFVVHFDI---- 313 (523)
T ss_dssp EECSSHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHT--TSCSEEEECTTSCTTTCCTTCCEEEESSC----
T ss_pred EEeCCHHHHHHHHHHHHHCCC-CEEEecCCCCHHHHHHHHHHHHc--CCCeEEEEechhhCCCCccCccEEEEECC----
Confidence 777 99999999999999876 89999999999999999999999 9999999999999999997 999999999
Q ss_pred CccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC-HHHHHhhhCC
Q 010836 322 GVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED-LPLLHKSLLE 369 (499)
Q Consensus 322 ~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~-~~~~~~~~~~ 369 (499)
|.|..+|+||+|||||.|.. |.|+.+++.+ ...++.++..
T Consensus 314 -----p~s~~~y~Qr~GRaGR~g~~---~~~~l~~~~~d~~~~~~~~~~ 354 (523)
T 1oyw_A 314 -----PRNIESYYQETGRAGRDGLP---AEAMLFYDPADMAWLRRCLEE 354 (523)
T ss_dssp -----CSSHHHHHHHHTTSCTTSSC---EEEEEEECHHHHHHHHHHHHT
T ss_pred -----CCCHHHHHHHhccccCCCCC---ceEEEEeCHHHHHHHHHHHhc
Confidence 67999999999999999987 8888776543 3455566654
No 9
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.5e-38 Score=321.44 Aligned_cols=298 Identities=18% Similarity=0.159 Sum_probs=217.9
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc------------------
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES------------------ 100 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~------------------ 100 (499)
.+++.+.+.+... ||..|+++|+ ++|.+ ++++++++++|||||||++++.++..
T Consensus 21 ~l~~~l~~~l~~~-----~~~~~~~~Q~~~i~~i--~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~ 93 (417)
T 2i4i_A 21 EMGEIIMGNIELT-----RYTRPTPVQKHAIPII--KEKRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENG 93 (417)
T ss_dssp CCCHHHHHHHHHH-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCB
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--ccCCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccc
Confidence 4789999999988 9999999999 99988 56999999999999999997654431
Q ss_pred -------CCCEEEEccHHHHHHHHHHHHHhc----CCceeEeeCCeec------ccCCCceEEEceeecc--------cc
Q 010836 101 -------SSSGIYCGPLRLLAWEVAKRLNKA----NVSCDLITGQERE------EVDGAKHRAVTVEMAD--------VV 155 (499)
Q Consensus 101 -------~~~~l~l~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~------~~~~~~~iv~T~e~~~--------~l 155 (499)
..+++|++||++|+.|++++++++ ++.+..++|+... ...+.+++++||+.+. .+
T Consensus 94 ~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~ 173 (417)
T 2i4i_A 94 RYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGL 173 (417)
T ss_dssp TTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCC
T ss_pred ccccccCCccEEEECCcHHHHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcCh
Confidence 146899999999999999999864 6777777776532 1346789999996652 25
Q ss_pred CCccEEEEecCcccCCCCCChhHHHHHhc--ccc-ccceEeecCCCch-HHHHHHH-HcCCeEEEEeeeec---------
Q 010836 156 SDYDCAVIDEIQMLGCKTRGFSFTRALLG--ICA-NELHLCGDPAAVP-LIQQILQ-VTGDDVKVQSYERL--------- 221 (499)
Q Consensus 156 ~~~~~iViDEah~~~~~~~g~~~~~~ll~--l~~-~~~~~~~~~~~~~-~~~~l~~-~~~~~~~~~~~~~~--------- 221 (499)
.+++++||||||++.+..++..+...+.. +.. ...++++.+++.+ ....+.. ..+....+......
T Consensus 174 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 253 (417)
T 2i4i_A 174 DFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGRVGSTSENITQK 253 (417)
T ss_dssp TTCCEEEESSHHHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC----CCSSEEEE
T ss_pred hhCcEEEEEChhHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCCCCCccCceEE
Confidence 78999999999999865333333343332 221 2345555555543 3344443 33332222111000
Q ss_pred ---CCCCcccccc-cccccc-CCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEE
Q 010836 222 ---SPLVPLNVPL-GSFSNI-QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVL 295 (499)
Q Consensus 222 ---~~~~~~~~~l-~~l~~~-~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iL 295 (499)
.+.......+ ..+... ..+.++||+ +++.++.+++.|.+.+. .+..+||++++++|..+++.|++ |+.+||
T Consensus 254 ~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~-~~~~~h~~~~~~~r~~~~~~f~~--g~~~vl 330 (417)
T 2i4i_A 254 VVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRS--GKSPIL 330 (417)
T ss_dssp EEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHH--TSSCEE
T ss_pred EEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHCCC-CeeEecCCCCHHHHHHHHHHHHc--CCCCEE
Confidence 0000001111 122222 344567777 89999999999998876 89999999999999999999999 999999
Q ss_pred Eecchhhcccccc-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 296 VASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 296 vaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
|||+++++|+|+| +++||+++. |.+..+|+||+||+||.|.. |.|+.+.+++
T Consensus 331 vaT~~~~~Gidip~v~~Vi~~~~---------p~s~~~~~Qr~GR~gR~g~~---g~~~~~~~~~ 383 (417)
T 2i4i_A 331 VATAVAARGLDISNVKHVINFDL---------PSDIEEYVHRIGRTGRVGNL---GLATSFFNER 383 (417)
T ss_dssp EECHHHHTTSCCCCEEEEEESSC---------CSSHHHHHHHHTTBCC--CC---EEEEEEECGG
T ss_pred EECChhhcCCCcccCCEEEEEcC---------CCCHHHHHHhcCccccCCCC---ceEEEEEccc
Confidence 9999999999997 999999998 77999999999999999987 9998877654
No 10
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=1.3e-37 Score=315.90 Aligned_cols=305 Identities=16% Similarity=0.193 Sum_probs=221.8
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-------cCCCEEEEccHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-------SSSSGIYCGPLR 111 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~-------~~~~~l~l~P~r 111 (499)
.+++.+.+.+... |+..|+++|. +++.+....++++++++|||||||++++.++. .+++++|++|++
T Consensus 11 ~l~~~l~~~l~~~-----~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 85 (395)
T 3pey_A 11 GLAPELLKGIYAM-----KFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSR 85 (395)
T ss_dssp CCCHHHHHHHHHT-----TCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCH
Confidence 4789999999988 9999999999 99998543349999999999999999876654 245899999999
Q ss_pred HHHHHHHHHHHhc----CCceeEeeCCeec--ccCCCceEEEceeecc--------ccCCccEEEEecCcccCCCCCChh
Q 010836 112 LLAWEVAKRLNKA----NVSCDLITGQERE--EVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFS 177 (499)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~g~~~~--~~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~~g~~ 177 (499)
+|+.|+++.++++ ++.+...+|+... ...+.+++++|++.+. .+.+++++|+||||++.+. +++.
T Consensus 86 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~-~~~~ 164 (395)
T 3pey_A 86 ELARQTLEVVQEMGKFTKITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQ-QGLG 164 (395)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHS-TTHH
T ss_pred HHHHHHHHHHHHHhcccCeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCc-cccH
Confidence 9999999999874 4556666654332 2236789999997652 3578999999999998752 2332
Q ss_pred -HHHHHhccccccceEeecCCCch-HHHHHHHHc-CCeEEEEeeeecCCCCc-------------ccccc-ccccccCCC
Q 010836 178 -FTRALLGICANELHLCGDPAAVP-LIQQILQVT-GDDVKVQSYERLSPLVP-------------LNVPL-GSFSNIQTG 240 (499)
Q Consensus 178 -~~~~ll~l~~~~~~~~~~~~~~~-~~~~l~~~~-~~~~~~~~~~~~~~~~~-------------~~~~l-~~l~~~~~~ 240 (499)
....+........++++.+++.+ ....+.... .....+........... ....+ ..+.....+
T Consensus 165 ~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 244 (395)
T 3pey_A 165 DQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIG 244 (395)
T ss_dssp HHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSS
T ss_pred HHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcCchHHHHHHHHHHHHhccCC
Confidence 22334444445556666666553 334444333 22222211110000000 00011 111222446
Q ss_pred CEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccc
Q 010836 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMK 318 (499)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~ 318 (499)
.++||+ +++.++.+++.|++.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++||+++.+
T Consensus 245 ~~lvf~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p 321 (395)
T 3pey_A 245 SSIIFVATKKTANVLYGKLKSEGH-EVSILHGDLQTQERDRLIDDFRE--GRSKVLITTNVLARGIDIPTVSMVVNYDLP 321 (395)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTC-CCEEECTTSCHHHHHHHHHHHHT--TSCCEEEECGGGSSSCCCTTEEEEEESSCC
T ss_pred CEEEEeCCHHHHHHHHHHHHhcCC-cEEEeCCCCCHHHHHHHHHHHHC--CCCCEEEECChhhcCCCcccCCEEEEcCCC
Confidence 677777 89999999999998876 89999999999999999999999 9999999999999999997 9999999984
Q ss_pred cccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 319 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 319 ~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
.+.. .+.+..+|+||+||+||.|.. |.++.+..++
T Consensus 322 ~~~~---~~~s~~~~~Qr~GR~gR~g~~---g~~~~~~~~~ 356 (395)
T 3pey_A 322 TLAN---GQADPATYIHRIGRTGRFGRK---GVAISFVHDK 356 (395)
T ss_dssp BCTT---SSBCHHHHHHHHTTSSCTTCC---EEEEEEECSH
T ss_pred CCCc---CCCCHHHhhHhccccccCCCC---ceEEEEEech
Confidence 3221 134899999999999999987 8888877653
No 11
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=2.2e-37 Score=316.23 Aligned_cols=320 Identities=13% Similarity=0.136 Sum_probs=227.5
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEEEEccHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLR 111 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~-------~~~~l~l~P~r 111 (499)
.+++.+.+.++.. |+..|+++|. +++.+....++++++++|||||||++++.++.. .++++|++|++
T Consensus 31 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 105 (412)
T 3fht_A 31 RLKPQLLQGVYAM-----GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTY 105 (412)
T ss_dssp TCCHHHHHHHHHT-----TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHc-----CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCH
Confidence 5889999999988 9999999999 999985433599999999999999998666542 23789999999
Q ss_pred HHHHHHHHHHHhc-----CCceeEeeCCeecc---cCCCceEEEceeecc---------ccCCccEEEEecCcccCCCCC
Q 010836 112 LLAWEVAKRLNKA-----NVSCDLITGQEREE---VDGAKHRAVTVEMAD---------VVSDYDCAVIDEIQMLGCKTR 174 (499)
Q Consensus 112 ~La~q~~~~l~~~-----g~~~~~~~g~~~~~---~~~~~~iv~T~e~~~---------~l~~~~~iViDEah~~~~~~~ 174 (499)
+|+.|+++.++++ +..+....|+.... ....+++++|++.+. .+.+++++|+||||++.+...
T Consensus 106 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~ 185 (412)
T 3fht_A 106 ELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQG 185 (412)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTT
T ss_pred HHHHHHHHHHHHHHhhcccceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCC
Confidence 9999999988864 45666666654322 225689999996551 136799999999999876323
Q ss_pred ChhHHHHHhccccccceEeecCCCch-HHHHHHH-HcCCeEEEEeeeecCCCCc-------------ccccc-ccccccC
Q 010836 175 GFSFTRALLGICANELHLCGDPAAVP-LIQQILQ-VTGDDVKVQSYERLSPLVP-------------LNVPL-GSFSNIQ 238 (499)
Q Consensus 175 g~~~~~~ll~l~~~~~~~~~~~~~~~-~~~~l~~-~~~~~~~~~~~~~~~~~~~-------------~~~~l-~~l~~~~ 238 (499)
.......+........++++.+++.+ ....+.. .......+........... ....+ ..+....
T Consensus 186 ~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 265 (412)
T 3fht_A 186 HQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAIT 265 (412)
T ss_dssp THHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECSSHHHHHHHHHHHHHHHS
T ss_pred cHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcCChHHHHHHHHHHHhhcC
Confidence 33334445555555566666666553 2333333 2232222211100000000 00001 1112224
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcc
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 316 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~ 316 (499)
.+.++||+ +++.++.+++.|.+.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++||+++
T Consensus 266 ~~~~lvf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gidip~~~~Vi~~~ 342 (412)
T 3fht_A 266 IAQAMIFCHTRKTASWLAAELSKEGH-QVALLSGEMMVEQRAAVIERFRE--GKEKVLVTTNVCARGIDVEQVSVVINFD 342 (412)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHTTC-CCEEECTTSCHHHHHHHHHHHHT--TSCSEEEECGGGTSSCCCTTEEEEEESS
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhCCC-eEEEecCCCCHHHHHHHHHHHHC--CCCcEEEEcCccccCCCccCCCEEEEEC
Confidence 56677777 89999999999998876 89999999999999999999999 9999999999999999997 99999999
Q ss_pred cccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCH-----HHHHhhhCCCCch
Q 010836 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL-----PLLHKSLLEPSPM 373 (499)
Q Consensus 317 ~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~~ 373 (499)
.+.... ...+..+|+||+||+||.|.. |.++.+.+.+. ..+++.++...++
T Consensus 343 ~p~~~~---~~~s~~~~~Qr~GR~gR~g~~---g~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 398 (412)
T 3fht_A 343 LPVDKD---GNPDNETYLHRIGRTGRFGKR---GLAVNMVDSKHSMNILNRIQEHFNKKIER 398 (412)
T ss_dssp CCBCSS---SSBCHHHHHHHHTTSSCTTCC---EEEEEEECSHHHHHHHHHHHHHHTCCCEE
T ss_pred CCCCCC---CCcchheeecccCcccCCCCC---ceEEEEEcChhhHHHHHHHHHHHCCcccc
Confidence 843110 014789999999999999987 99988876542 2334445444444
No 12
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=4.4e-38 Score=321.59 Aligned_cols=311 Identities=16% Similarity=0.142 Sum_probs=225.7
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-------cCCCEEEEccHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-------SSSSGIYCGPLR 111 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~-------~~~~~l~l~P~r 111 (499)
.+++.+.+.++.. ||..|+++|. +++.+ ++++++++.+|||||||++++.++. .+.+++|++|++
T Consensus 43 ~l~~~l~~~l~~~-----g~~~~~~~Q~~ai~~i--~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~ 115 (410)
T 2j0s_A 43 GLREDLLRGIYAY-----GFEKPSAIQQRAIKQI--IKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTR 115 (410)
T ss_dssp CCCHHHHHHHHHH-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcH
Confidence 4789999999888 9999999999 99988 5689999999999999999876665 346899999999
Q ss_pred HHHHHHHHHHHhc----CCceeEeeCCeecc------cCCCceEEEceeecc--------ccCCccEEEEecCcccCCCC
Q 010836 112 LLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKT 173 (499)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~ 173 (499)
+|+.|+++.+.++ ++.+..++|+.... ..+..++++||+.+. .+.+++++|+||||++.+..
T Consensus 116 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~~ 195 (410)
T 2j0s_A 116 ELAVQIQKGLLALGDYMNVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKG 195 (410)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTSTT
T ss_pred HHHHHHHHHHHHHhccCCeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHhhh
Confidence 9999999999865 46677777764321 125688999996542 24679999999999998653
Q ss_pred CChhHHHHHhccccccceEeecCCCch-HHHHHHH-HcCCeEEEEeeeecCCC-------------Ccccccc-cccccc
Q 010836 174 RGFSFTRALLGICANELHLCGDPAAVP-LIQQILQ-VTGDDVKVQSYERLSPL-------------VPLNVPL-GSFSNI 237 (499)
Q Consensus 174 ~g~~~~~~ll~l~~~~~~~~~~~~~~~-~~~~l~~-~~~~~~~~~~~~~~~~~-------------~~~~~~l-~~l~~~ 237 (499)
+...+.. ++.......++++.+++.+ ....+.. .......+......... ......+ ..+...
T Consensus 196 ~~~~~~~-i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~ 274 (410)
T 2j0s_A 196 FKEQIYD-VYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTL 274 (410)
T ss_dssp THHHHHH-HHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEESSTTHHHHHHHHHHHHH
T ss_pred hHHHHHH-HHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeCcHHhHHHHHHHHHHhc
Confidence 2222333 3333344455566555553 2222222 22222222111000000 0000111 111223
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEc
Q 010836 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFS 315 (499)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~ 315 (499)
..++++||+ +++.++.+++.|.+.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++||++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~-~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gidi~~v~~Vi~~ 351 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREANF-TVSSMHGDMPQKERESIMKEFRS--GASRVLISTDVWARGLDVPQVSLIINY 351 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHTTC-CCEEECTTSCHHHHHHHHHHHHH--TSSCEEEECGGGSSSCCCTTEEEEEES
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhCCC-ceEEeeCCCCHHHHHHHHHHHHC--CCCCEEEECChhhCcCCcccCCEEEEE
Confidence 455677777 89999999999998876 89999999999999999999999 9999999999999999997 9999999
Q ss_pred ccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC-H---HHHHhhhCCCCch
Q 010836 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED-L---PLLHKSLLEPSPM 373 (499)
Q Consensus 316 ~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~-~---~~~~~~~~~~~~~ 373 (499)
+. |.+...|+||+||+||.|.. |.|+.+..++ . ..+++++....++
T Consensus 352 ~~---------p~s~~~~~Qr~GR~gR~g~~---g~~~~~~~~~~~~~~~~i~~~~~~~~~~ 401 (410)
T 2j0s_A 352 DL---------PNNRELYIHRIGRSGRYGRK---GVAINFVKNDDIRILRDIEQYYSTQIDE 401 (410)
T ss_dssp SC---------CSSHHHHHHHHTTSSGGGCC---EEEEEEEEGGGHHHHHHHHHHTTCCCEE
T ss_pred CC---------CCCHHHHHHhcccccCCCCc---eEEEEEecHHHHHHHHHHHHHhCCCcee
Confidence 98 77999999999999999987 9887776544 2 3344455555444
No 13
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=100.00 E-value=1.4e-38 Score=346.53 Aligned_cols=390 Identities=17% Similarity=0.178 Sum_probs=276.9
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEEEEccHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLR 111 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~-------~~~~l~l~P~r 111 (499)
.+++.+.+.++.. + ..|+.+|+ +++.+. ..+++++++||||||||++.+..+.. +.++++++|+|
T Consensus 78 ~l~~~~~~~l~~r-----~-~lP~~~q~~~i~~~l-~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r 150 (773)
T 2xau_A 78 EFTPKYVDILKIR-----R-ELPVHAQRDEFLKLY-QNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRR 150 (773)
T ss_dssp BCCHHHHHHHHHH-----T-TSGGGGGHHHHHHHH-HHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCH
T ss_pred CCCHHHHHHHHHh-----h-cCChHHHHHHHHHHH-hCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchH
Confidence 4678888888876 5 67888898 777764 35789999999999999976544432 34588899999
Q ss_pred HHHHHHHHHHHh-cCCceeEeeCC----eecccCCCceEEEceeecc-------ccCCccEEEEecCccc-CCCCCChhH
Q 010836 112 LLAWEVAKRLNK-ANVSCDLITGQ----EREEVDGAKHRAVTVEMAD-------VVSDYDCAVIDEIQML-GCKTRGFSF 178 (499)
Q Consensus 112 ~La~q~~~~l~~-~g~~~~~~~g~----~~~~~~~~~~iv~T~e~~~-------~l~~~~~iViDEah~~-~~~~~g~~~ 178 (499)
+|+.|+++++.+ ++..++..+|. +.....+..++++|++++. .+.+++++||||+|+. .+.+....+
T Consensus 151 ~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~ 230 (773)
T 2xau_A 151 VAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGL 230 (773)
T ss_dssp HHHHHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHH
Confidence 999999998864 45555544443 2333456789999996552 4689999999999973 221000111
Q ss_pred HHHHhccccccceEeecCCCchHHHHHHHHcCCeEEE---------EeeeecCCCCc-cccccccc----cccCCCCEEE
Q 010836 179 TRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKV---------QSYERLSPLVP-LNVPLGSF----SNIQTGDCIV 244 (499)
Q Consensus 179 ~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~-~~~~l~~l----~~~~~~~~iv 244 (499)
...+.... ...+++..+++.+ ...+..+.+....+ ..++...+... ....+..+ .....++++|
T Consensus 231 l~~l~~~~-~~~~iIl~SAT~~-~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLV 308 (773)
T 2xau_A 231 LKQVVKRR-PDLKIIIMSATLD-AEKFQRYFNDAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILL 308 (773)
T ss_dssp HHHHHHHC-TTCEEEEEESCSC-CHHHHHHTTSCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEE
T ss_pred HHHHHHhC-CCceEEEEecccc-HHHHHHHhcCCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEE
Confidence 22222222 2345555555543 23444444432222 11111111100 01111111 1224678888
Q ss_pred Ee-eHHHHHHHHHHHHHc----------CCCeEEEEcCCCCHHHHHHHHHHhc-----CCCCCccEEEecchhhcccccc
Q 010836 245 TF-SRHAIYRLKKAIESR----------GKHLCSIVYGSLPPETRTRQATRFN-----DASSEFDVLVASDAIGMGLNLN 308 (499)
Q Consensus 245 ~~-s~~~~~~l~~~L~~~----------~~~~v~~~hg~l~~~~R~~~~~~f~-----~~~g~~~iLvaT~~~~~Gidip 308 (499)
|+ ++++++.+++.|.+. ....+.++||+|++++|..+++.|. + |.++|||||+++++|||||
T Consensus 309 F~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~--g~~kVlVAT~iae~GidIp 386 (773)
T 2xau_A 309 FLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGR--PGRKVVISTNIAETSLTID 386 (773)
T ss_dssp ECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSS--CCEEEEEECTHHHHTCCCT
T ss_pred ECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCC--CceEEEEeCcHHHhCcCcC
Confidence 88 899999999999751 3447999999999999999999999 7 9999999999999999997
Q ss_pred -ccEEEEccccc---ccCc------cccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCHHHH-HhhhCCCCchhhhc
Q 010836 309 -ISRIIFSTMKK---FDGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLL-HKSLLEPSPMLESA 377 (499)
Q Consensus 309 -v~~VI~~~~~~---~~~~------~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~i~~~ 377 (499)
|++||+++..+ ||+. ...|.|.++|.||+|||||.++ |.|+.++.++ .+ ..+.....|++.+.
T Consensus 387 ~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~----G~~~~l~~~~--~~~~~l~~~~~pEi~r~ 460 (773)
T 2xau_A 387 GIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRP----GKCFRLYTEE--AFQKELIEQSYPEILRS 460 (773)
T ss_dssp TEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSS----EEEEESSCHH--HHHHTSCSSCCCGGGGS
T ss_pred CeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCC----CEEEEEecHH--HhcccccccCCCccccC
Confidence 99999998865 7764 2348999999999999999954 9999999754 44 56778899999999
Q ss_pred CCCChHHHHHHHHh----------cCCCccHHHHHHHHHHhcccCCCccccChHHHHHHHHhhccCCCCHHH-HHhhhcC
Q 010836 378 GLFPNFDLIYMYSR----------LHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHE-KYLFCIS 446 (499)
Q Consensus 378 ~l~~~~~~l~~~~~----------~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~-~~~~~~~ 446 (499)
++...++.++.+.. .++...+..+++.+..+..++.. ++++.+|..+..+|+++.. ++++..+
T Consensus 461 ~L~~~~L~l~~~gi~~~~~f~~~~~p~~~~i~~a~~~L~~lgald~~------~~lT~lG~~~a~~pl~p~~~~~l~~~~ 534 (773)
T 2xau_A 461 NLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDE------GNLTPLGRLASQFPLDPMLAVMLIGSF 534 (773)
T ss_dssp CCHHHHHHHHHTTCCCGGGCCCSSCCCHHHHHHHHHHHHHTTSBCTT------SCBCHHHHHHTTSSSCHHHHHHHHHGG
T ss_pred cHHHHHHHHHHcCCCChhhccccCCCcHHHHHHHHHHHHHcCCcccC------CCcChhhhhhccccCCHHHHHHHHhhc
Confidence 99999988887542 23456788999999998888755 3588999999999998877 6665555
Q ss_pred CCCCCC
Q 010836 447 PVDMND 452 (499)
Q Consensus 447 p~~~~~ 452 (499)
...|.+
T Consensus 535 ~~~c~~ 540 (773)
T 2xau_A 535 EFQCSQ 540 (773)
T ss_dssp GGTCHH
T ss_pred ccCchh
Confidence 555433
No 14
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.9e-37 Score=315.74 Aligned_cols=297 Identities=18% Similarity=0.186 Sum_probs=220.7
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-------cCCCEEEEccHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-------SSSSGIYCGPLR 111 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~-------~~~~~l~l~P~r 111 (499)
.+++.+.+.+... ||..|+++|. +++.+. +++++++.+|||||||++++.++. .+.+++|++|++
T Consensus 27 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~i~--~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 99 (400)
T 1s2m_A 27 YLKRELLMGIFEA-----GFEKPSPIQEEAIPVAI--TGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTR 99 (400)
T ss_dssp CCCHHHHHHHHHT-----TCCSCCHHHHHHHHHHH--HTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHHh--cCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCH
Confidence 4789999999988 9999999999 999884 488999999999999999866654 245789999999
Q ss_pred HHHHHHHHHHHhc----CCceeEeeCCeecc------cCCCceEEEceeec--------cccCCccEEEEecCcccCCCC
Q 010836 112 LLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMA--------DVVSDYDCAVIDEIQMLGCKT 173 (499)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~--------~~l~~~~~iViDEah~~~~~~ 173 (499)
+|+.|+++.++++ ++.+...+|+.... ..+.+++++|++.+ ..+.+++++|+||||++.+..
T Consensus 100 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~ 179 (400)
T 1s2m_A 100 ELALQTSQVVRTLGKHCGISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLSRD 179 (400)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSHH
T ss_pred HHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhhhc
Confidence 9999999999864 67777787765421 24678999999655 235789999999999988642
Q ss_pred CChhHHHHHhccccccceEeecCCCch-HHHH-HHHHcCCeEEEEeeeecCC-----------CCcccccc-ccccccCC
Q 010836 174 RGFSFTRALLGICANELHLCGDPAAVP-LIQQ-ILQVTGDDVKVQSYERLSP-----------LVPLNVPL-GSFSNIQT 239 (499)
Q Consensus 174 ~g~~~~~~ll~l~~~~~~~~~~~~~~~-~~~~-l~~~~~~~~~~~~~~~~~~-----------~~~~~~~l-~~l~~~~~ 239 (499)
++..+ ..++.......+++..+++.+ .... +.........+........ .......+ ..+.....
T Consensus 180 ~~~~~-~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~ 258 (400)
T 1s2m_A 180 FKTII-EQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVEERQKLHCLNTLFSKLQI 258 (400)
T ss_dssp HHHHH-HHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECCGGGHHHHHHHHHHHSCC
T ss_pred hHHHH-HHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEechhhHHHHHHHHHhhcCC
Confidence 22222 223333333445555555443 2333 3334443333221111000 00000111 11222345
Q ss_pred CCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEccc
Q 010836 240 GDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTM 317 (499)
Q Consensus 240 ~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~ 317 (499)
+.++||+ +++.++.+++.|.+.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++||+++.
T Consensus 259 ~~~lVf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~r~~~~~~f~~--g~~~vLv~T~~~~~Gidip~~~~Vi~~~~ 335 (400)
T 1s2m_A 259 NQAIIFCNSTNRVELLAKKITDLGY-SCYYSHARMKQQERNKVFHEFRQ--GKVRTLVCSDLLTRGIDIQAVNVVINFDF 335 (400)
T ss_dssp SEEEEECSSHHHHHHHHHHHHHHTC-CEEEECTTSCHHHHHHHHHHHHT--TSSSEEEESSCSSSSCCCTTEEEEEESSC
T ss_pred CcEEEEEecHHHHHHHHHHHHhcCC-CeEEecCCCCHHHHHHHHHHHhc--CCCcEEEEcCccccCCCccCCCEEEEeCC
Confidence 6677777 89999999999998876 89999999999999999999999 9999999999999999997 999999998
Q ss_pred ccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 318 KKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 318 ~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
|.+..+|+||+||+||.|.. |.|+.+.+++
T Consensus 336 ---------p~s~~~~~Qr~GR~gR~g~~---g~~~~l~~~~ 365 (400)
T 1s2m_A 336 ---------PKTAETYLHRIGRSGRFGHL---GLAINLINWN 365 (400)
T ss_dssp ---------CSSHHHHHHHHCBSSCTTCC---EEEEEEECGG
T ss_pred ---------CCCHHHHHHhcchhcCCCCC---ceEEEEeccc
Confidence 77999999999999999987 9998886654
No 15
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=4.5e-38 Score=321.70 Aligned_cols=298 Identities=14% Similarity=0.146 Sum_probs=208.3
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-------cCCCEEEEccHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-------SSSSGIYCGPLR 111 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~-------~~~~~l~l~P~r 111 (499)
.+++.+.+.++.. ++..++++|+ +++.+ ++++++++.+|||||||++++.++. .+++++|++|++
T Consensus 46 ~l~~~~~~~l~~~-----~~~~~~~~Q~~~i~~~--~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~ 118 (414)
T 3eiq_A 46 NLSESLLRGIYAY-----GFEKPSAIQQRAILPC--IKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTR 118 (414)
T ss_dssp CCCHHHHHHHHHT-----TCCSCCHHHHHHHHHH--HTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHc-----CCCCCCHHHHHHhHHH--hCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChH
Confidence 4788999999888 9999999999 99988 5689999999999999999876664 346789999999
Q ss_pred HHHHHHHHHHHhc----CCceeEeeCCeecc-------cCCCceEEEceeecc--------ccCCccEEEEecCcccCCC
Q 010836 112 LLAWEVAKRLNKA----NVSCDLITGQEREE-------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCK 172 (499)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~g~~~~~-------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~ 172 (499)
+|+.|+++.++++ +..+...+|+.... ..+..++++|++.+. .+..++++|+||||++.+.
T Consensus 119 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~ 198 (414)
T 3eiq_A 119 ELAQQIQKVVMALGDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR 198 (414)
T ss_dssp HHHHHHHHHHHHHGGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHT
T ss_pred HHHHHHHHHHHHHhcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhcc
Confidence 9999999999865 56677666654321 146789999996642 2467999999999998755
Q ss_pred CCChhHHHHHhccccccceEeecCCCc-hHHHHHHHH-cCCeEEEEeeeecCCC-------------Ccccccc-ccccc
Q 010836 173 TRGFSFTRALLGICANELHLCGDPAAV-PLIQQILQV-TGDDVKVQSYERLSPL-------------VPLNVPL-GSFSN 236 (499)
Q Consensus 173 ~~g~~~~~~ll~l~~~~~~~~~~~~~~-~~~~~l~~~-~~~~~~~~~~~~~~~~-------------~~~~~~l-~~l~~ 236 (499)
.++..+...+..+ ....++++.+++. +....+... ......+......... ......+ ..+..
T Consensus 199 ~~~~~~~~~~~~~-~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 277 (414)
T 3eiq_A 199 GFKDQIYDIFQKL-NSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVEREEWKLDTLCDLYET 277 (414)
T ss_dssp TTHHHHHHHHTTS-CTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECSSSTTHHHHHHHHHHS
T ss_pred CcHHHHHHHHHhC-CCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeChHHhHHHHHHHHHHh
Confidence 3333334443333 3455666666665 333334332 2222222111100000 0001111 12223
Q ss_pred cCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEE
Q 010836 237 IQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIF 314 (499)
Q Consensus 237 ~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~ 314 (499)
...++++||+ +++.++.+++.|.+.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++||+
T Consensus 278 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~-~~~~~h~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gidip~v~~Vi~ 354 (414)
T 3eiq_A 278 LTITQAVIFINTRRKVDWLTEKMHARDF-TVSAMHGDMDQKERDVIMREFRS--GSSRVLITTDLLARGIDVQQVSLVIN 354 (414)
T ss_dssp SCCSSCEEECSCHHHHHHHHHHHHTTTC-CCEEC---CHHHHHHHHHHHHSC--C---CEEECSSCC--CCGGGCSCEEE
T ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhcCC-eEEEecCCCCHHHHHHHHHHHHc--CCCcEEEECCccccCCCccCCCEEEE
Confidence 3456677777 89999999999988876 89999999999999999999999 9999999999999999997 999999
Q ss_pred cccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCH
Q 010836 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL 360 (499)
Q Consensus 315 ~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~ 360 (499)
++. |.+..+|+||+||+||.|.. |.|+.+..++.
T Consensus 355 ~~~---------p~s~~~~~Qr~GR~gR~g~~---g~~~~~~~~~~ 388 (414)
T 3eiq_A 355 YDL---------PTNRENYIHRIGRGGRFGRK---GVAINMVTEED 388 (414)
T ss_dssp SSC---------CSSTHHHHHHSCCC----------CEEEEECSTH
T ss_pred eCC---------CCCHHHhhhhcCcccCCCCC---ceEEEEEcHHH
Confidence 998 77999999999999999987 88888877653
No 16
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.2e-37 Score=308.98 Aligned_cols=297 Identities=18% Similarity=0.182 Sum_probs=218.5
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc------CCCEEEEccHHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES------SSSGIYCGPLRL 112 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~------~~~~l~l~P~r~ 112 (499)
.+++.+.+.+++. |+..|++.|. +++.+.. .++++++.+|||||||++++.++.. +.+++|++|+++
T Consensus 12 ~l~~~~~~~l~~~-----g~~~~~~~Q~~~i~~~~~-~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~ 85 (367)
T 1hv8_A 12 NLSDNILNAIRNK-----GFEKPTDIQMKVIPLFLN-DEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRE 85 (367)
T ss_dssp SCCHHHHHHHHHH-----TCCSCCHHHHHHHHHHHH-TCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHH
T ss_pred CCCHHHHHHHHHc-----CCCCCCHHHHHHHHHHhC-CCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHH
Confidence 4889999999988 9999999999 9998843 2379999999999999998665542 458999999999
Q ss_pred HHHHHHHHHHhc----CCceeEeeCCeecc-----cCCCceEEEceeecc--------ccCCccEEEEecCcccCCCCCC
Q 010836 113 LAWEVAKRLNKA----NVSCDLITGQEREE-----VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRG 175 (499)
Q Consensus 113 La~q~~~~l~~~----g~~~~~~~g~~~~~-----~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~~g 175 (499)
|+.|+++++.++ ++.+...+|+.... ..+.+++++|++.+. .+.+++++|+||||++.+..+.
T Consensus 86 L~~q~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~ 165 (367)
T 1hv8_A 86 LAIQVADEIESLKGNKNLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLNMGFI 165 (367)
T ss_dssp HHHHHHHHHHHHHCSSCCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTTTTH
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhhhchH
Confidence 999999999864 56677777764421 236789999997652 2578999999999999865322
Q ss_pred hhHHHHHhccccccceEeecCCCch-HHHHHH-HHcCCeEEEEeeeecCCCC---------ccccccccccccCCCCEEE
Q 010836 176 FSFTRALLGICANELHLCGDPAAVP-LIQQIL-QVTGDDVKVQSYERLSPLV---------PLNVPLGSFSNIQTGDCIV 244 (499)
Q Consensus 176 ~~~~~~ll~l~~~~~~~~~~~~~~~-~~~~l~-~~~~~~~~~~~~~~~~~~~---------~~~~~l~~l~~~~~~~~iv 244 (499)
..+.. ++.......++++.+++.+ ....+. ...+....+.. ....... .....+..+.....+..+|
T Consensus 166 ~~~~~-~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~lv 243 (367)
T 1hv8_A 166 KDVEK-ILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKA-KINANIEQSYVEVNENERFEALCRLLKNKEFYGLV 243 (367)
T ss_dssp HHHHH-HHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEEC-CSSSSSEEEEEECCGGGHHHHHHHHHCSTTCCEEE
T ss_pred HHHHH-HHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEe-cCCCCceEEEEEeChHHHHHHHHHHHhcCCCcEEE
Confidence 22333 3333334455555555543 222333 33343222211 1000100 0011111112234556777
Q ss_pred Ee-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccccccC
Q 010836 245 TF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDG 322 (499)
Q Consensus 245 ~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~ 322 (499)
|+ +++.++.+++.|++.+. .+..+||+++.++|..+++.|++ |+.+|||||+++++|+|+| +++||+++.
T Consensus 244 f~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~----- 315 (367)
T 1hv8_A 244 FCKTKRDTKELASMLRDIGF-KAGAIHGDLSQSQREKVIRLFKQ--KKIRILIATDVMSRGIDVNDLNCVINYHL----- 315 (367)
T ss_dssp ECSSHHHHHHHHHHHHHTTC-CEEEECSSSCHHHHHHHHHHHHT--TSSSEEEECTTHHHHCCCSCCSEEEESSC-----
T ss_pred EECCHHHHHHHHHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHHc--CCCeEEEECChhhcCCCcccCCEEEEecC-----
Confidence 77 89999999999998876 89999999999999999999999 9999999999999999997 999999998
Q ss_pred ccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 323 VELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 323 ~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
|.+..+|.||+||+||.|.. |.++.+.+++
T Consensus 316 ----~~s~~~~~Q~~GR~~R~g~~---g~~~~~~~~~ 345 (367)
T 1hv8_A 316 ----PQNPESYMHRIGRTGRAGKK---GKAISIINRR 345 (367)
T ss_dssp ----CSCHHHHHHHSTTTCCSSSC---CEEEEEECTT
T ss_pred ----CCCHHHhhhcccccccCCCc---cEEEEEEcHH
Confidence 77999999999999999976 7776665543
No 17
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=2.1e-37 Score=314.25 Aligned_cols=297 Identities=15% Similarity=0.165 Sum_probs=220.0
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEEEEccHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLR 111 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~-------~~~~l~l~P~r 111 (499)
.+++.+.+.+... |+..|+++|. +++.+ ++++++++.+|||+|||++++.++.. ..+++|++|++
T Consensus 14 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~--~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 86 (391)
T 1xti_A 14 LLKPELLRAIVDC-----GFEHPSEVQHECIPQA--ILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 86 (391)
T ss_dssp CCCHHHHHHHHHH-----SCCSCCHHHHHHHHHH--TTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCH
Confidence 4789999999988 9999999999 99988 56899999999999999998655542 34889999999
Q ss_pred HHHHHHHHHHHhc-----CCceeEeeCCeecc-------cCCCceEEEceeecc--------ccCCccEEEEecCcccCC
Q 010836 112 LLAWEVAKRLNKA-----NVSCDLITGQEREE-------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 112 ~La~q~~~~l~~~-----g~~~~~~~g~~~~~-------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~ 171 (499)
+|+.|+++.+.++ ++++..++|+.... ....+++++|++.+. .+.+++++|+||||++.+
T Consensus 87 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~ 166 (391)
T 1xti_A 87 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 166 (391)
T ss_dssp HHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTS
T ss_pred HHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhh
Confidence 9999999999875 68888888865421 124689999997663 357899999999999975
Q ss_pred CCCChh-HHHHHhccccccceEeecCCCch-HHHHHH-HHcCCeEEEEeeeecC-CCC------------cccccc-ccc
Q 010836 172 KTRGFS-FTRALLGICANELHLCGDPAAVP-LIQQIL-QVTGDDVKVQSYERLS-PLV------------PLNVPL-GSF 234 (499)
Q Consensus 172 ~~~g~~-~~~~ll~l~~~~~~~~~~~~~~~-~~~~l~-~~~~~~~~~~~~~~~~-~~~------------~~~~~l-~~l 234 (499)
. .++. ....++.......++++.+++.+ ....+. ........+....... ... .....+ ..+
T Consensus 167 ~-~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 245 (391)
T 1xti_A 167 Q-LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLL 245 (391)
T ss_dssp S-HHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECCGGGHHHHHHHHH
T ss_pred c-cchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcCchhHHHHHHHHH
Confidence 2 1221 12223334444455555555442 233333 3333332221111000 000 000011 112
Q ss_pred cccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEE
Q 010836 235 SNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRI 312 (499)
Q Consensus 235 ~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~V 312 (499)
.....++++||+ +++.++.+++.|.+.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++|
T Consensus 246 ~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~T~~~~~Gidi~~~~~V 322 (391)
T 1xti_A 246 DVLEFNQVVIFVKSVQRCIALAQLLVEQNF-PAIAIHRGMPQEERLSRYQQFKD--FQRRILVATNLFGRGMDIERVNIA 322 (391)
T ss_dssp HHSCCSEEEEECSCHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHT--TCCSEEEESCCCSSCBCCTTEEEE
T ss_pred HhcCCCcEEEEeCcHHHHHHHHHHHHhCCC-cEEEEeCCCCHHHHHHHHHHHhc--CCCcEEEECChhhcCCCcccCCEE
Confidence 223456677777 89999999999998876 89999999999999999999999 9999999999999999998 9999
Q ss_pred EEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 313 I~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
|+++. |.+..+|+||+||+||.|.. |.|+.+..++
T Consensus 323 i~~~~---------p~s~~~~~Qr~GR~~R~g~~---g~~~~~~~~~ 357 (391)
T 1xti_A 323 FNYDM---------PEDSDTYLHRVARAGRFGTK---GLAITFVSDE 357 (391)
T ss_dssp EESSC---------CSSHHHHHHHHCBCSSSCCC---CEEEEEECSH
T ss_pred EEeCC---------CCCHHHHHHhcccccCCCCc---eEEEEEEccc
Confidence 99998 77999999999999999987 8887776654
No 18
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=4.3e-37 Score=327.19 Aligned_cols=309 Identities=15% Similarity=0.127 Sum_probs=220.3
Q ss_pred CCCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----cC-------CCEEE
Q 010836 39 ASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SS-------SSGIY 106 (499)
Q Consensus 39 ~~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~----~~-------~~~l~ 106 (499)
..+++.+.+.+... ||..|+++|. +++.+....+++++++||||||||++|+.++. .. .++||
T Consensus 77 ~~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~l~~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~li 151 (563)
T 3i5x_A 77 GVLDKEIHKAITRM-----EFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVI 151 (563)
T ss_dssp TSSCHHHHHHHHTT-----CCSSCCHHHHHHHHHHHSSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEE
T ss_pred CCCCHHHHHHHHHC-----CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEE
Confidence 34889999999888 9999999999 99988533689999999999999999755443 32 37899
Q ss_pred EccHHHHHHHHHHHHHhc--------CCceeEeeCCeecc-------cCCCceEEEceeecc---------ccCCccEEE
Q 010836 107 CGPLRLLAWEVAKRLNKA--------NVSCDLITGQEREE-------VDGAKHRAVTVEMAD---------VVSDYDCAV 162 (499)
Q Consensus 107 l~P~r~La~q~~~~l~~~--------g~~~~~~~g~~~~~-------~~~~~~iv~T~e~~~---------~l~~~~~iV 162 (499)
++||++|+.|++++++++ +..+..++|+.... ..+.+++|+||+.+. .+..++++|
T Consensus 152 l~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 231 (563)
T 3i5x_A 152 VAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKV 231 (563)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred EcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEE
Confidence 999999999999999863 24455566654321 226789999997652 358899999
Q ss_pred EecCcccCCCCCChhHHHHHhccc------cccceEeecCCCch-HHHHHHHHcCCe-EEEEee--eecCCC--Cc----
Q 010836 163 IDEIQMLGCKTRGFSFTRALLGIC------ANELHLCGDPAAVP-LIQQILQVTGDD-VKVQSY--ERLSPL--VP---- 226 (499)
Q Consensus 163 iDEah~~~~~~~g~~~~~~ll~l~------~~~~~~~~~~~~~~-~~~~l~~~~~~~-~~~~~~--~~~~~~--~~---- 226 (499)
|||||++.+..++..+..++..+. ....++++.+++.+ .+..+....... ..+... ....+. ..
T Consensus 232 iDEah~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (563)
T 3i5x_A 232 LDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHERIDQS 311 (563)
T ss_dssp EETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTTEEEE
T ss_pred EeCHHHHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCCccccccCceE
Confidence 999999996643333333322221 12445566665554 345554433221 111110 000000 00
Q ss_pred ------cc----cccc----cccc-cCCCCEEEEe-eHHHHHHHHHHHHHc--CCCeEEEEcCCCCHHHHHHHHHHhcCC
Q 010836 227 ------LN----VPLG----SFSN-IQTGDCIVTF-SRHAIYRLKKAIESR--GKHLCSIVYGSLPPETRTRQATRFNDA 288 (499)
Q Consensus 227 ------~~----~~l~----~l~~-~~~~~~iv~~-s~~~~~~l~~~L~~~--~~~~v~~~hg~l~~~~R~~~~~~f~~~ 288 (499)
.. ..+. .+.. ...+.+|||+ |++.++.+++.|.+. ....+..+||++++++|..+++.|++
T Consensus 312 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~R~~~~~~f~~- 390 (563)
T 3i5x_A 312 VVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKK- 390 (563)
T ss_dssp EEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHHHHH-
T ss_pred EEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHHHHHHHHHHhc-
Confidence 00 0011 1111 2345667777 899999999999876 13489999999999999999999999
Q ss_pred CCCccEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC-CHHHHHhh
Q 010836 289 SSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE-DLPLLHKS 366 (499)
Q Consensus 289 ~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~-~~~~~~~~ 366 (499)
|+.+|||||+++++|||+| +++||+++. |.+..+|+||+|||||.|.. |.++.+... +...++.+
T Consensus 391 -g~~~vLvaT~~~~~GiDip~v~~VI~~~~---------p~s~~~y~Qr~GRagR~g~~---g~~i~~~~~~e~~~~~~l 457 (563)
T 3i5x_A 391 -DESGILVCTDVGARGMDFPNVHEVLQIGV---------PSELANYIHRIGRTARSGKE---GSSVLFICKDELPFVREL 457 (563)
T ss_dssp -CSSEEEEECGGGTSSCCCTTCCEEEEESC---------CSSTTHHHHHHTTSSCTTCC---EEEEEEEEGGGHHHHHHH
T ss_pred -CCCCEEEEcchhhcCCCcccCCEEEEECC---------CCchhhhhhhcCccccCCCC---ceEEEEEchhHHHHHHHH
Confidence 9999999999999999998 999999998 77999999999999999987 887666544 33444444
No 19
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=100.00 E-value=2.3e-37 Score=359.22 Aligned_cols=326 Identities=19% Similarity=0.210 Sum_probs=248.1
Q ss_pred ccCCCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----Hc--CCCEEEEcc
Q 010836 37 AFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ES--SSSGIYCGP 109 (499)
Q Consensus 37 ~~~~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l----~~--~~~~l~l~P 109 (499)
....+.+...+.+... +|..++++|. +++.+. ..+++++++||||||||++|..++ .+ +++++|++|
T Consensus 907 p~s~L~~~~~e~l~~~-----~f~~fnpiQ~q~~~~l~-~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P 980 (1724)
T 4f92_B 907 PVSALRNSAFESLYQD-----KFPFFNPIQTQVFNTVY-NSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITP 980 (1724)
T ss_dssp BGGGSCCHHHHTTTTT-----TCSBCCHHHHHHHHHHH-SCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred CcccccCHHHHHHHHh-----cCCCCCHHHHHHHHHHh-cCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcC
Confidence 3344555666666655 7999999999 999885 457899999999999999974443 32 468999999
Q ss_pred HHHHHHHHHHHHHh-----cCCceeEeeCCeecc---cCCCceEEEceeeccc----------cCCccEEEEecCcccCC
Q 010836 110 LRLLAWEVAKRLNK-----ANVSCDLITGQEREE---VDGAKHRAVTVEMADV----------VSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 110 ~r~La~q~~~~l~~-----~g~~~~~~~g~~~~~---~~~~~~iv~T~e~~~~----------l~~~~~iViDEah~~~~ 171 (499)
+|+||.|+++.+.+ .|++|+.++|+.... ..+++++|+|||.++. +.+++++|+||+|++.+
T Consensus 981 ~raLa~q~~~~~~~~f~~~~g~~V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d 1060 (1724)
T 4f92_B 981 MEALAEQVYMDWYEKFQDRLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG 1060 (1724)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCCEEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS
T ss_pred hHHHHHHHHHHHHHHhchhcCCEEEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC
Confidence 99999999998864 478899999975432 2367899999988743 36799999999999987
Q ss_pred CCCChhHHHHHhcc------ccccceEeecCCCchHHHHHHHHcCCe----EEEEeeeecCCCCcccc------------
Q 010836 172 KTRGFSFTRALLGI------CANELHLCGDPAAVPLIQQILQVTGDD----VKVQSYERLSPLVPLNV------------ 229 (499)
Q Consensus 172 ~~~g~~~~~~ll~l------~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~------------ 229 (499)
++|..+...+..+ ....+++++.++++++..++..|.+.. +.+....|+.++.....
T Consensus 1061 -~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~ 1139 (1724)
T 4f92_B 1061 -ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLL 1139 (1724)
T ss_dssp -TTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHHHH
T ss_pred -CCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhhhh
Confidence 6888776554332 346789999999999999999998653 22233334444322100
Q ss_pred ----cc-ccccc-cCCCCEEEEe-eHHHHHHHHHHHHHc---------------------------------CCCeEEEE
Q 010836 230 ----PL-GSFSN-IQTGDCIVTF-SRHAIYRLKKAIESR---------------------------------GKHLCSIV 269 (499)
Q Consensus 230 ----~l-~~l~~-~~~~~~iv~~-s~~~~~~l~~~L~~~---------------------------------~~~~v~~~ 269 (499)
.+ ..+.. ...+.+++|+ |++.++.++..|... ...++++|
T Consensus 1140 ~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~h 1219 (1724)
T 4f92_B 1140 SMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL 1219 (1724)
T ss_dssp TTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEE
T ss_pred hhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEE
Confidence 00 11111 2455677777 899998887766431 01259999
Q ss_pred cCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccccccccEEEEcccccccCc--cccccChhhHHhhhccCCCCCCCC
Q 010836 270 YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGV--ELRDLTVPEVKQIAGRAGRYGSKF 347 (499)
Q Consensus 270 hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidipv~~VI~~~~~~~~~~--~~~p~s~~~~~Qr~GRagR~g~~~ 347 (499)
||+|++++|..+++.|++ |.++|||||+++++|||+|...||+.+..+||+. +..|.+..+|.||+|||||.|.+
T Consensus 1220 HagL~~~~R~~VE~lF~~--G~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~s~~~~~Qm~GRAGR~g~d- 1296 (1724)
T 4f92_B 1220 HEGLSPMERRLVEQLFSS--GAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYPIYDVLQMVGHANRPLQD- 1296 (1724)
T ss_dssp CTTSCHHHHHHHHHHHHH--TSBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEECCHHHHHHHHTTBCCTTTC-
T ss_pred CCCCCHHHHHHHHHHHHC--CCCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCCCHHHHHHhhccccCCCCC-
Confidence 999999999999999999 9999999999999999999999999999999986 56788999999999999999985
Q ss_pred CcEEEEEEcCCC-HHHHHhhhCCCCc
Q 010836 348 PVGEVTCLDSED-LPLLHKSLLEPSP 372 (499)
Q Consensus 348 ~~g~~~~~~~~~-~~~~~~~~~~~~~ 372 (499)
..|.|+.+..+. ...+++++..+.|
T Consensus 1297 ~~G~avll~~~~~~~~~~~ll~~~~p 1322 (1724)
T 4f92_B 1297 DEGRCVIMCQGSKKDFFKKFLYEPLP 1322 (1724)
T ss_dssp SCEEEEEEEEGGGHHHHHHHTTSCBC
T ss_pred CceEEEEEecchHHHHHHHHhCCCCc
Confidence 669887776554 4677777766543
No 20
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.7e-37 Score=305.87 Aligned_cols=298 Identities=18% Similarity=0.213 Sum_probs=216.2
Q ss_pred CcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-cCCCEEEEccHHHHHHHHH
Q 010836 41 VDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-SSSSGIYCGPLRLLAWEVA 118 (499)
Q Consensus 41 l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~-~~~~~l~l~P~r~La~q~~ 118 (499)
+++.+.+.++.. |+..|++.|. +++.+ ++++++++.+|||+|||++++.++. .+.+++|++|+++|+.|++
T Consensus 1 l~~~i~~~l~~~-----g~~~l~~~Q~~~i~~i--~~~~~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~ 73 (337)
T 2z0m_A 1 MNEKIEQAIREM-----GFKNFTEVQSKTIPLM--LQGKNVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVA 73 (337)
T ss_dssp CCHHHHHHHHHT-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHH
T ss_pred CCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--hcCCCEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHH
Confidence 567888999888 9999999999 99988 5689999999999999999866654 4678999999999999999
Q ss_pred HHHHhc----CCceeEeeCCeec-----ccCCCceEEEceeecc--------ccCCccEEEEecCcccCCCCCChhHHHH
Q 010836 119 KRLNKA----NVSCDLITGQERE-----EVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRA 181 (499)
Q Consensus 119 ~~l~~~----g~~~~~~~g~~~~-----~~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~~g~~~~~~ 181 (499)
++++++ +..+..++|+... ...+.+++++|++.+. .+.+++++|+||||++.+..+...+...
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~ 153 (337)
T 2z0m_A 74 SHIRDIGRYMDTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFIDDIKII 153 (337)
T ss_dssp HHHHHHTTTSCCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhhhcCCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccHHHHHHH
Confidence 999864 5677777776432 1235789999996652 2477899999999999854322223333
Q ss_pred HhccccccceEeecCCCc-hHHHH-HHHHcCCeEEEEeeeecCC-------CCc-cccccccccccCCCCEEEEe-eHHH
Q 010836 182 LLGICANELHLCGDPAAV-PLIQQ-ILQVTGDDVKVQSYERLSP-------LVP-LNVPLGSFSNIQTGDCIVTF-SRHA 250 (499)
Q Consensus 182 ll~l~~~~~~~~~~~~~~-~~~~~-l~~~~~~~~~~~~~~~~~~-------~~~-~~~~l~~l~~~~~~~~iv~~-s~~~ 250 (499)
+.... ...+++..+++. +.... +.........+........ ... ....+..+.....+.++||+ +++.
T Consensus 154 ~~~~~-~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lvf~~~~~~ 232 (337)
T 2z0m_A 154 LAQTS-NRKITGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVKDDWRSKVQALRENKDKGVIVFVRTRNR 232 (337)
T ss_dssp HHHCT-TCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECSSSSHHHHHHHHTCCCSSEEEECSCHHH
T ss_pred HhhCC-cccEEEEEeCcCCHHHHHHHHHhcCCceeeecccccCCceEEEEEeChHHHHHHHHHHhCCCCcEEEEEcCHHH
Confidence 33333 333333333333 33333 3333333222211100000 000 01111223334566777777 8999
Q ss_pred HHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccccccCccccccC
Q 010836 251 IYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLT 329 (499)
Q Consensus 251 ~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s 329 (499)
++.+++.|. ++..+||+++.++|.++++.|++ |+.+|||||+++++|+|+| +++||+++. |.+
T Consensus 233 ~~~l~~~l~-----~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~---------~~s 296 (337)
T 2z0m_A 233 VAKLVRLFD-----NAIELRGDLPQSVRNRNIDAFRE--GEYDMLITTDVASRGLDIPLVEKVINFDA---------PQD 296 (337)
T ss_dssp HHHHHTTCT-----TEEEECTTSCHHHHHHHHHHHHT--TSCSEEEECHHHHTTCCCCCBSEEEESSC---------CSS
T ss_pred HHHHHHHhh-----hhhhhcCCCCHHHHHHHHHHHHc--CCCcEEEEcCccccCCCccCCCEEEEecC---------CCC
Confidence 999988875 58899999999999999999999 9999999999999999998 999999998 779
Q ss_pred hhhHHhhhccCCCCCCCCCcEEEEEEcCCCHHHHHh
Q 010836 330 VPEVKQIAGRAGRYGSKFPVGEVTCLDSEDLPLLHK 365 (499)
Q Consensus 330 ~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~~~~~~ 365 (499)
..+|+||+||+||.|.. |.++.+...+...+++
T Consensus 297 ~~~~~Q~~GR~gR~g~~---g~~~~~~~~~~~~~~~ 329 (337)
T 2z0m_A 297 LRTYIHRIGRTGRMGRK---GEAITFILNEYWLEKE 329 (337)
T ss_dssp HHHHHHHHTTBCGGGCC---EEEEEEESSCHHHHHH
T ss_pred HHHhhHhcCccccCCCC---ceEEEEEeCcHHHHHH
Confidence 99999999999999987 8887776655444444
No 21
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=9.9e-37 Score=325.04 Aligned_cols=313 Identities=15% Similarity=0.118 Sum_probs=220.7
Q ss_pred cCccCCCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----cC-------C
Q 010836 35 IGAFASVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SS-------S 102 (499)
Q Consensus 35 ~~~~~~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~----~~-------~ 102 (499)
......+++.+.+.++.. ||..|+++|. +++.+....++++++++|||||||++++.++. .. .
T Consensus 22 l~~~~~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~il~~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~ 96 (579)
T 3sqw_A 22 LLEEGVLDKEIHKAITRM-----EFPGLTPVQQKTIKPILSSEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMV 96 (579)
T ss_dssp HHHTTSSCHHHHHHHHTT-----TCSSCCHHHHHHHHHHHCSSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSC
T ss_pred HhhcCCCCHHHHHHHHHC-----CCCCCCHHHHHHHHHHHccCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCC
Confidence 334456899999999988 9999999999 99988533689999999999999999755443 22 3
Q ss_pred CEEEEccHHHHHHHHHHHHHhc--------CCceeEeeCCeecc-------cCCCceEEEceeecc---------ccCCc
Q 010836 103 SGIYCGPLRLLAWEVAKRLNKA--------NVSCDLITGQEREE-------VDGAKHRAVTVEMAD---------VVSDY 158 (499)
Q Consensus 103 ~~l~l~P~r~La~q~~~~l~~~--------g~~~~~~~g~~~~~-------~~~~~~iv~T~e~~~---------~l~~~ 158 (499)
++||++||++|+.|+++.+.++ ...+..+.|+.... ..+..++|+||+.+. .+..+
T Consensus 97 ~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~ 176 (579)
T 3sqw_A 97 KAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFV 176 (579)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTC
T ss_pred eEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccC
Confidence 7899999999999999999864 23455555543321 125789999997652 45889
Q ss_pred cEEEEecCcccCCCCCChhHHHHHhccc------cccceEeecCCCch-HHHHHHHHcCCe-EEEEee--eecCCC--Cc
Q 010836 159 DCAVIDEIQMLGCKTRGFSFTRALLGIC------ANELHLCGDPAAVP-LIQQILQVTGDD-VKVQSY--ERLSPL--VP 226 (499)
Q Consensus 159 ~~iViDEah~~~~~~~g~~~~~~ll~l~------~~~~~~~~~~~~~~-~~~~l~~~~~~~-~~~~~~--~~~~~~--~~ 226 (499)
+++||||||++.+..++..+..++..+. ....+++..+++.+ .+..+....... ..+... ....+. ..
T Consensus 177 ~~lViDEah~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 256 (579)
T 3sqw_A 177 DYKVLDEADRLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNEPEAHER 256 (579)
T ss_dssp CEEEEETHHHHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSSCSSCTT
T ss_pred CEEEEEChHHhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccccccccc
Confidence 9999999999996532223333322221 12345555555543 344444433221 111110 000000 00
Q ss_pred c----------c----cccc----cccc-cCCCCEEEEe-eHHHHHHHHHHHHHcC--CCeEEEEcCCCCHHHHHHHHHH
Q 010836 227 L----------N----VPLG----SFSN-IQTGDCIVTF-SRHAIYRLKKAIESRG--KHLCSIVYGSLPPETRTRQATR 284 (499)
Q Consensus 227 ~----------~----~~l~----~l~~-~~~~~~iv~~-s~~~~~~l~~~L~~~~--~~~v~~~hg~l~~~~R~~~~~~ 284 (499)
. . ..+. .+.. ...+.+|||+ +++.++.+++.|.+.. ...+..+||++++++|..+++.
T Consensus 257 i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~R~~~~~~ 336 (579)
T 3sqw_A 257 IDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKR 336 (579)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHHHHHHHHH
T ss_pred cceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHHHHHHHHH
Confidence 0 0 0001 1111 2345677777 8999999999998761 3489999999999999999999
Q ss_pred hcCCCCCccEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC-HHH
Q 010836 285 FNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED-LPL 362 (499)
Q Consensus 285 f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~-~~~ 362 (499)
|++ |+.+|||||+++++|||+| +++||+++. |.+...|+||+|||||.|.. |.|+.+..++ ...
T Consensus 337 F~~--g~~~vLVaT~~~~~GiDip~v~~VI~~~~---------p~s~~~y~Qr~GRagR~g~~---g~~i~~~~~~e~~~ 402 (579)
T 3sqw_A 337 FKK--DESGILVCTDVGARGMDFPNVHEVLQIGV---------PSELANYIHRIGRTARSGKE---GSSVLFICKDELPF 402 (579)
T ss_dssp HHH--CSSEEEEECGGGTSSCCCTTCCEEEEESC---------CSSTTHHHHHHTTSSCTTCC---EEEEEEEEGGGHHH
T ss_pred hhc--CCCeEEEEcchhhcCCCcccCCEEEEcCC---------CCCHHHhhhhccccccCCCC---ceEEEEEcccHHHH
Confidence 999 9999999999999999998 999999999 77999999999999999987 8887765544 344
Q ss_pred HHhh
Q 010836 363 LHKS 366 (499)
Q Consensus 363 ~~~~ 366 (499)
++.+
T Consensus 403 ~~~l 406 (579)
T 3sqw_A 403 VREL 406 (579)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 22
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1e-36 Score=339.78 Aligned_cols=323 Identities=20% Similarity=0.252 Sum_probs=239.9
Q ss_pred ccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHhcCCceeEe
Q 010836 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLI 131 (499)
Q Consensus 57 ~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l----~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~ 131 (499)
++|. |+++|. +++.+ .+++++++++|||||||+++..++ ..+++++|++|+++|+.|+++.+.+....++++
T Consensus 83 ~~f~-L~~~Q~eai~~l--~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~~vgll 159 (1010)
T 2xgj_A 83 YPFT-LDPFQDTAISCI--DRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLM 159 (1010)
T ss_dssp CSSC-CCHHHHHHHHHH--HHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHSCEEEE
T ss_pred CCCC-CCHHHHHHHHHH--HcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhCCEEEE
Confidence 4665 999999 99988 458999999999999999974433 456789999999999999999998754489999
Q ss_pred eCCeecccCCCceEEEceeecc--------ccCCccEEEEecCcccCCCCCChhHHHHHhccccccceEeecCCCchHHH
Q 010836 132 TGQEREEVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQ 203 (499)
Q Consensus 132 ~g~~~~~~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~~~~~ 203 (499)
+|+.... .+.+++|+|++++. .+.++++|||||||.+.+.+||..|...+..+. ...++++.+++++...
T Consensus 160 tGd~~~~-~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~-~~~~il~LSATi~n~~ 237 (1010)
T 2xgj_A 160 TGDITIN-PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLP-DKVRYVFLSATIPNAM 237 (1010)
T ss_dssp CSSCEEC-TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSC-TTCEEEEEECCCTTHH
T ss_pred eCCCccC-CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHHHHHHHhcC-CCCeEEEEcCCCCCHH
Confidence 9987654 46789999997662 357899999999999999888988877766554 5667788888887766
Q ss_pred HHHHHcC----CeEE-EEeeeecCCCCcc---------------------------------------------------
Q 010836 204 QILQVTG----DDVK-VQSYERLSPLVPL--------------------------------------------------- 227 (499)
Q Consensus 204 ~l~~~~~----~~~~-~~~~~~~~~~~~~--------------------------------------------------- 227 (499)
.+..+.+ .... +....++.++...
T Consensus 238 e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~ 317 (1010)
T 2xgj_A 238 EFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQT 317 (1010)
T ss_dssp HHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-------------------
T ss_pred HHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhcccccccccccccccc
Confidence 6555532 2222 2111111111000
Q ss_pred ----------cccc----ccccccCCCCEEEEe-eHHHHHHHHHHHHHcCC-----------------------------
Q 010836 228 ----------NVPL----GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGK----------------------------- 263 (499)
Q Consensus 228 ----------~~~l----~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~----------------------------- 263 (499)
...+ ..+.....+.+|||+ +++.++.+++.|...+.
T Consensus 318 ~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~ 397 (1010)
T 2xgj_A 318 YKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQ 397 (1010)
T ss_dssp -----------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHH
T ss_pred cccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchh
Confidence 0000 011111333567766 99999999988865321
Q ss_pred ---------CeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhccccccccEEEEcccccccCccccccChhhHH
Q 010836 264 ---------HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVK 334 (499)
Q Consensus 264 ---------~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidipv~~VI~~~~~~~~~~~~~p~s~~~~~ 334 (499)
.++.++||+|++.+|..+++.|++ |.++|||||+++++|||+|...||+.+..+||+...+|.+..+|+
T Consensus 398 ~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~--G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~ 475 (1010)
T 2xgj_A 398 IKHILPLLRRGIGIHHSGLLPILKEVIEILFQE--GFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYI 475 (1010)
T ss_dssp HHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHT--TCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHH
T ss_pred HHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhc--CCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHh
Confidence 138999999999999999999999 999999999999999999955566667888998888899999999
Q ss_pred hhhccCCCCCCCCCcEEEEEEcCCC--HHHHHhhhCCCCchhhhcCCCChHHHHHH
Q 010836 335 QIAGRAGRYGSKFPVGEVTCLDSED--LPLLHKSLLEPSPMLESAGLFPNFDLIYM 388 (499)
Q Consensus 335 Qr~GRagR~g~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~i~~~~l~~~~~~l~~ 388 (499)
||+|||||.|.+ ..|.|+.+..+. ...+.+++....+.+ ...+......+..
T Consensus 476 Qr~GRAGR~G~d-~~G~vi~l~~~~~e~~~~~~l~~~~~~~l-~s~f~~~~~~iln 529 (1010)
T 2xgj_A 476 QMSGRAGRRGLD-DRGIVIMMIDEKMEPQVAKGMVKGQADRL-DSAFHLGYNMILN 529 (1010)
T ss_dssp HHHTTBCCTTTC-SSEEEEEEECSCCCHHHHHHHHSCCCCCC-CCCCCCCHHHHHH
T ss_pred HhhhhcccCCCC-CceEEEEEECCCCCHHHHHHHHhCCCccc-ccccCCcHHHHHH
Confidence 999999999974 459998887654 356777777666554 3444444444433
No 23
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=8.1e-38 Score=326.20 Aligned_cols=305 Identities=14% Similarity=0.160 Sum_probs=120.9
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHcC-------CCEEEEccHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLESS-------SSGIYCGPLR 111 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~~-------~~~l~l~P~r 111 (499)
.+++.+.+.+... ||..|+++|. ++|.+....+++++++||||||||++|+.++... +++||++|++
T Consensus 98 ~l~~~l~~~l~~~-----g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~ 172 (479)
T 3fmp_B 98 RLKPQLLQGVYAM-----GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTY 172 (479)
T ss_dssp TCCHHHHHHHHHT-----TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHc-----CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChH
Confidence 5889999999988 9999999999 9999854335999999999999999998777532 3799999999
Q ss_pred HHHHHHHHHHHhc-----CCceeEeeCCeecc---cCCCceEEEceeec-------cc--cCCccEEEEecCcccCCCCC
Q 010836 112 LLAWEVAKRLNKA-----NVSCDLITGQEREE---VDGAKHRAVTVEMA-------DV--VSDYDCAVIDEIQMLGCKTR 174 (499)
Q Consensus 112 ~La~q~~~~l~~~-----g~~~~~~~g~~~~~---~~~~~~iv~T~e~~-------~~--l~~~~~iViDEah~~~~~~~ 174 (499)
+|+.|+++.+.++ +..+....|..... .....++|+||+.+ .. +.+++++||||||++.+..
T Consensus 173 ~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~- 251 (479)
T 3fmp_B 173 ELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQ- 251 (479)
T ss_dssp HHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTST-
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcC-
Confidence 9999998888753 45566666644322 22467999999655 12 3789999999999997632
Q ss_pred Chh-HHHHHhccccccceEeecCCCchH-HHHHHHH-cCCeEEEEeeeecCCC-------------Ccccccc-cccccc
Q 010836 175 GFS-FTRALLGICANELHLCGDPAAVPL-IQQILQV-TGDDVKVQSYERLSPL-------------VPLNVPL-GSFSNI 237 (499)
Q Consensus 175 g~~-~~~~ll~l~~~~~~~~~~~~~~~~-~~~l~~~-~~~~~~~~~~~~~~~~-------------~~~~~~l-~~l~~~ 237 (499)
++. ....+........+++..+++.+. ...+... ......+......... ......+ ..+...
T Consensus 252 ~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 331 (479)
T 3fmp_B 252 GHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSSRDEKFQALCNLYGAI 331 (479)
T ss_dssp THHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC---------------------------------
T ss_pred CcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCCHHHHHHHHHHHHhhc
Confidence 333 334455555555666666665543 3344432 2332222111000000 0011111 112222
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEc
Q 010836 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFS 315 (499)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~ 315 (499)
..+.++||+ +++.++.+++.|.+.+. .+..+||++++.+|..+++.|++ |+.+|||||+++++|+|+| +++||++
T Consensus 332 ~~~~~lvF~~s~~~~~~l~~~L~~~~~-~v~~lh~~~~~~~R~~~~~~f~~--g~~~iLv~T~~~~~GlDip~v~~VI~~ 408 (479)
T 3fmp_B 332 TIAQAMIFCHTRKTASWLAAELSKEGH-QVALLSGEMMVEQRAAVIERFRE--GKEKVLVTTNVCARGIDVEQVSVVINF 408 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCceEEEeCcHHHHHHHHHHHHhCCc-cEEEecCCCCHHHHHHHHHHHHc--CCCcEEEEccccccCCccccCCEEEEe
Confidence 445667777 89999999999988876 89999999999999999999999 9999999999999999997 9999999
Q ss_pred ccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 316 ~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
+.+.+... +.+..+|+||+|||||.|.. |.++.+.+.+
T Consensus 409 d~p~~~~~---~~s~~~~~Qr~GRagR~g~~---G~~i~~~~~~ 446 (479)
T 3fmp_B 409 DLPVDKDG---NPDNETYLHRIGRTGRFGKR---GLAVNMVDSK 446 (479)
T ss_dssp --------------------------------------------
T ss_pred cCCCCCcc---CCCHHHHHHHhcccccCCCC---ceEEEEEcCc
Confidence 98431100 14678999999999999987 8887776543
No 24
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=2.9e-36 Score=336.21 Aligned_cols=309 Identities=22% Similarity=0.309 Sum_probs=234.8
Q ss_pred ccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHhc--CCcee
Q 010836 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNKA--NVSCD 129 (499)
Q Consensus 57 ~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l----~~~~~~l~l~P~r~La~q~~~~l~~~--g~~~~ 129 (499)
++|. +++.|. +++.+ +++++++++||||||||+++..++ ..+++++|++|+++|+.|+++++++. ++.++
T Consensus 36 ~~f~-l~~~Q~~aI~~i--l~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~ 112 (997)
T 4a4z_A 36 WPFE-LDTFQKEAVYHL--EQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFDDVNIG 112 (997)
T ss_dssp CSSC-CCHHHHHHHHHH--HTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC--CCEE
T ss_pred CCCC-CCHHHHHHHHHH--HcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEE
Confidence 3554 899999 99988 569999999999999999864333 34567999999999999999999975 67899
Q ss_pred EeeCCeecccCCCceEEEceeecc--------ccCCccEEEEecCcccCCCCCChhHHHHHhccccccceEeecCCCchH
Q 010836 130 LITGQEREEVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPL 201 (499)
Q Consensus 130 ~~~g~~~~~~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~~~ 201 (499)
.++|+.... ...+++++||+.+. .+.++++|||||||++.+..+|..|...+..+. ..++++..++|.+.
T Consensus 113 ~l~G~~~~~-~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~-~~v~iIlLSAT~~n 190 (997)
T 4a4z_A 113 LITGDVQIN-PDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLP-QHVKFILLSATVPN 190 (997)
T ss_dssp EECSSCEEC-TTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSC-TTCEEEEEECCCTT
T ss_pred EEeCCCccC-CCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccccchHHHHHHHHHhcc-cCCCEEEEcCCCCC
Confidence 999986544 45789999997652 357899999999999999888999988877665 45677777777766
Q ss_pred HHHHHHHcC----CeE-EEEeeeecCCCCcc-------------------------------------------------
Q 010836 202 IQQILQVTG----DDV-KVQSYERLSPLVPL------------------------------------------------- 227 (499)
Q Consensus 202 ~~~l~~~~~----~~~-~~~~~~~~~~~~~~------------------------------------------------- 227 (499)
..++..+.+ ..+ .+....+..++...
T Consensus 191 ~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 270 (997)
T 4a4z_A 191 TYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKTDNGRGGST 270 (997)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-------------------
T ss_pred hHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccccccccccc
Confidence 656665543 111 11111111111000
Q ss_pred --------------------------------------------------c----cccccccccCCCCEEEEe-eHHHHH
Q 010836 228 --------------------------------------------------N----VPLGSFSNIQTGDCIVTF-SRHAIY 252 (499)
Q Consensus 228 --------------------------------------------------~----~~l~~l~~~~~~~~iv~~-s~~~~~ 252 (499)
. ..+..+.....+.+|||+ |++.++
T Consensus 271 ~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF~~sr~~~e 350 (997)
T 4a4z_A 271 ARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVFVFSKKRCE 350 (997)
T ss_dssp ----------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEECSCHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEEECCHHHHH
Confidence 0 000111222345677777 999999
Q ss_pred HHHHHHHHcCC--------------------------------------CeEEEEcCCCCHHHHHHHHHHhcCCCCCccE
Q 010836 253 RLKKAIESRGK--------------------------------------HLCSIVYGSLPPETRTRQATRFNDASSEFDV 294 (499)
Q Consensus 253 ~l~~~L~~~~~--------------------------------------~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~i 294 (499)
.+++.|.+.+. .++.++||+|++.+|..+++.|++ |.++|
T Consensus 351 ~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~~--G~~kV 428 (997)
T 4a4z_A 351 EYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFSK--GFIKV 428 (997)
T ss_dssp HHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHT--TCCSE
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHHC--CCCcE
Confidence 99998865322 258999999999999999999999 99999
Q ss_pred EEecchhhccccccccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC---CHHHHHhhhCCCC
Q 010836 295 LVASDAIGMGLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE---DLPLLHKSLLEPS 371 (499)
Q Consensus 295 LvaT~~~~~Gidipv~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~---~~~~~~~~~~~~~ 371 (499)
||||+++++|||+|-..||+++..+||+....|+|..+|+||+|||||.|.+ ..|.|+.+..+ +...+++++....
T Consensus 429 LvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~G~~-~~G~vi~l~~~~~~~~~~~~~~i~~~~ 507 (997)
T 4a4z_A 429 LFATETFAMGLNLPTRTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRRGLD-STGTVIVMAYNSPLSIATFKEVTMGVP 507 (997)
T ss_dssp EEECTHHHHSCCCCCSEEEESCSEEEETTEEEECCHHHHHHHHGGGCCTTTC-SSEEEEEECCSSCCCHHHHHHHHHSCC
T ss_pred EEEchHhhCCCCCCCceEEEeccccccCccCCCCCHHHHhHHhcccccCCCC-cceEEEEecCCCcchHHHHHHHhcCCC
Confidence 9999999999999989999999999999988999999999999999999954 56999888743 3356666665555
Q ss_pred ch
Q 010836 372 PM 373 (499)
Q Consensus 372 ~~ 373 (499)
+.
T Consensus 508 ~~ 509 (997)
T 4a4z_A 508 TR 509 (997)
T ss_dssp CC
T ss_pred cc
Confidence 44
No 25
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.3e-37 Score=347.90 Aligned_cols=320 Identities=19% Similarity=0.223 Sum_probs=232.9
Q ss_pred cCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHhcCCceeEee
Q 010836 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLIT 132 (499)
Q Consensus 58 ~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l----~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~ 132 (499)
....|+++|. +++.+ .++++++++||||||||++|..++ ..+++++|++|+++|+.|+++++.+....+++++
T Consensus 181 ~~f~ltp~Q~~AI~~i--~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~~Vgllt 258 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCI--DRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFGDVGLMT 258 (1108)
T ss_dssp CSSCCCHHHHHHHHHH--TTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTSSEEEEC
T ss_pred CCCCCCHHHHHHHHHH--HcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhCCccEEe
Confidence 5667999999 99998 679999999999999999985544 4567899999999999999999998656899999
Q ss_pred CCeecccCCCceEEEceeecc--------ccCCccEEEEecCcccCCCCCChhHHHHHhccccccceEeecCCCchHHHH
Q 010836 133 GQEREEVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQQ 204 (499)
Q Consensus 133 g~~~~~~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~~~~~~ 204 (499)
|+.... .+.+++|+||+.+. .+.++++|||||||++.+.++|..|...+..+ ....++++.+++.+...+
T Consensus 259 Gd~~~~-~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l-~~~~qvl~lSATipn~~e 336 (1108)
T 3l9o_A 259 GDITIN-PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVWEETIILL-PDKVRYVFLSATIPNAME 336 (1108)
T ss_dssp SSCBCC-CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHHHHHHHHHHS-CTTSEEEEEECSCSSCHH
T ss_pred CccccC-CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHHHHHHHHHhc-CCCceEEEEcCCCCCHHH
Confidence 987644 46889999997652 25789999999999999876777777666554 456677777777754444
Q ss_pred HHHHc----CCeEE-EEeeeecCCCCcc----------------------------------------------------
Q 010836 205 ILQVT----GDDVK-VQSYERLSPLVPL---------------------------------------------------- 227 (499)
Q Consensus 205 l~~~~----~~~~~-~~~~~~~~~~~~~---------------------------------------------------- 227 (499)
+..+. +.... +....+..++...
T Consensus 337 ~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 416 (1108)
T 3l9o_A 337 FAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNSTDSRGKKGQTY 416 (1108)
T ss_dssp HHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC---------------------
T ss_pred HHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhccccccccccccccccc
Confidence 33332 22222 1111122111100
Q ss_pred ---------cc----ccccccccCCCCEEEEe-eHHHHHHHHHHHHHcCC------------------------------
Q 010836 228 ---------NV----PLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGK------------------------------ 263 (499)
Q Consensus 228 ---------~~----~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~------------------------------ 263 (499)
.. .+..+.....+.+|||+ +++.|+.++..|...+.
T Consensus 417 ~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~ 496 (1108)
T 3l9o_A 417 KGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQI 496 (1108)
T ss_dssp --------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHH
T ss_pred ccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhH
Confidence 00 00111112344677776 99999999998854211
Q ss_pred --------CeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHH
Q 010836 264 --------HLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVK 334 (499)
Q Consensus 264 --------~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~ 334 (499)
..+.++||+|++.+|..+++.|++ |.++|||||+++++|||+| +++||+++ .+|++...+|+|..+|+
T Consensus 497 ~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~--G~ikVLVAT~vla~GIDiP~v~~VI~~~-~~~d~~~~r~iS~~eyi 573 (1108)
T 3l9o_A 497 KHILPLLRRGIGIHHSGLLPILKEVIEILFQE--GFLKVLFATETFSIGLNMPAKTVVFTSV-RKWDGQQFRWVSGGEYI 573 (1108)
T ss_dssp HHHTHHHHHTEEEECSCSCHHHHHHHHHHHHH--TCCCEEEEESCCCSCCCC--CEEEESCS-EEESSSCEEECCHHHHH
T ss_pred HHHHHhhhcCeeeecCCCCHHHHHHHHHHHhC--CCCeEEEECcHHhcCCCCCCceEEEecC-cccCccccccCCHHHHH
Confidence 028999999999999999999999 9999999999999999998 77777654 46788778899999999
Q ss_pred hhhccCCCCCCCCCcEEEEEEcCCC--HHHHHhhhCCCCchhhhcCCCChHHHH
Q 010836 335 QIAGRAGRYGSKFPVGEVTCLDSED--LPLLHKSLLEPSPMLESAGLFPNFDLI 386 (499)
Q Consensus 335 Qr~GRagR~g~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~i~~~~l~~~~~~l 386 (499)
||+|||||.|.+ +.|.|+.++.+. ...+.+++......+. ..+......+
T Consensus 574 Qr~GRAGR~G~d-~~G~~ill~~~~~~~~~~~~l~~~~~~~L~-S~f~~~y~~i 625 (1108)
T 3l9o_A 574 QMSGRAGRRGLD-DRGIVIMMIDEKMEPQVAKGMVKGQADRLD-SAFHLGYNMI 625 (1108)
T ss_dssp HHHHHSCCSSSC-SSEEEEEEECCCCCHHHHHHHHHCCCCCCC-CCCCCCHHHH
T ss_pred HhhcccCCCCCC-CceEEEEEecCCcCHHHHHHHhcCCCcccc-cccCCcHHHH
Confidence 999999999953 459999887664 3566777766655444 3333334333
No 26
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=2.9e-37 Score=313.52 Aligned_cols=297 Identities=14% Similarity=0.163 Sum_probs=120.5
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-------cCCCEEEEccHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-------SSSSGIYCGPLR 111 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~-------~~~~~l~l~P~r 111 (499)
.+++.+.+.+... |+..|+++|. +++.+. +++++++.+|||||||++++.++. .+++++|++|++
T Consensus 27 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~i~--~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~ 99 (394)
T 1fuu_A 27 ELDENLLRGVFGY-----GFEEPSAIQQRAIMPII--EGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTR 99 (394)
T ss_dssp CCCHHHHHHHHHH-----TCCSCCHHHHHHHHHHH--HTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHc-----CCCCCCHHHHHHHHHHh--CCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCH
Confidence 4899999999988 9999999999 999884 489999999999999999765554 245899999999
Q ss_pred HHHHHHHHHHHhc----CCceeEeeCCeecc-----cCCCceEEEceeecc--------ccCCccEEEEecCcccCCCCC
Q 010836 112 LLAWEVAKRLNKA----NVSCDLITGQEREE-----VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTR 174 (499)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~g~~~~~-----~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~~ 174 (499)
+|+.|+++.+.++ ++.+..++|+.... ..+.+++++|++.+. .+.+++++|+||||++.+..+
T Consensus 100 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~~~ 179 (394)
T 1fuu_A 100 ELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGF 179 (394)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhCCCc
Confidence 9999999998864 67788888765421 125789999997652 246899999999999875533
Q ss_pred ChhHHHHHhccccccceEeecCCCch-HHHHHH-HHcCCeEEEEeeeec-------------CCCCcccccc-ccccccC
Q 010836 175 GFSFTRALLGICANELHLCGDPAAVP-LIQQIL-QVTGDDVKVQSYERL-------------SPLVPLNVPL-GSFSNIQ 238 (499)
Q Consensus 175 g~~~~~~ll~l~~~~~~~~~~~~~~~-~~~~l~-~~~~~~~~~~~~~~~-------------~~~~~~~~~l-~~l~~~~ 238 (499)
...+... +.......++++.+++.+ ....+. ........+...... .........+ ..+....
T Consensus 180 ~~~~~~~-~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 258 (394)
T 1fuu_A 180 KEQIYQI-FTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVEEEEYKYECLTDLYDSIS 258 (394)
T ss_dssp HHHHHHH-HHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------------------
T ss_pred HHHHHHH-HHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcCchhhHHHHHHHHHhcCC
Confidence 3333333 333334455666666553 222222 333333322211100 0000011111 1222234
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcc
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 316 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~ 316 (499)
.++++||+ +++.++.+++.|++.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++||+++
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~r~~~~~~f~~--~~~~vlv~T~~~~~Gldi~~~~~Vi~~~ 335 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRNDKF-TVSAIYSDLPQQERDTIMKEFRS--GSSRILISTDLLARGIDVQQVSLVINYD 335 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHcCC-eEEEeeCCCCHHHHHHHHHHHHC--CCCcEEEECChhhcCCCcccCCEEEEeC
Confidence 55667776 89999999999988766 89999999999999999999999 9999999999999999997 99999999
Q ss_pred cccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 317 ~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
. |.+..+|+||+||+||.|.. |.|+.+..++
T Consensus 336 ~---------p~s~~~~~Qr~GR~~R~g~~---g~~~~~~~~~ 366 (394)
T 1fuu_A 336 L---------PANKENYIHRIGRGGRFGRK---GVAINFVTNE 366 (394)
T ss_dssp -------------------------------------------
T ss_pred C---------CCCHHHHHHHcCcccCCCCC---ceEEEEEchh
Confidence 8 77999999999999999987 8887776554
No 27
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5e-36 Score=314.24 Aligned_cols=321 Identities=13% Similarity=0.139 Sum_probs=189.0
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEEEEccHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLR 111 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~-------~~~~l~l~P~r 111 (499)
.+++.+.+.+... ++..|+++|+ +++.+....++++++++|||||||++++.++.. .++++|++|++
T Consensus 125 ~l~~~~~~~l~~~-----g~~~p~~~Q~~ai~~i~~~~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~ 199 (508)
T 3fho_A 125 XXXXXXXXXXXXX-----XXXXXXKIQEKALPLLLSNPPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSR 199 (508)
T ss_dssp -------------------CEECCCTTSSSHHHHHCSSCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCH
T ss_pred ccccccccccccc-----cccCcHHHHHHHHHHHHcCCCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcH
Confidence 3555666666666 8899999999 999885422499999999999999998665542 34799999999
Q ss_pred HHHHHHHHHHHhcC----CceeEeeCCee--cccCCCceEEEceeecc--------ccCCccEEEEecCcccCCCCCChh
Q 010836 112 LLAWEVAKRLNKAN----VSCDLITGQER--EEVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFS 177 (499)
Q Consensus 112 ~La~q~~~~l~~~g----~~~~~~~g~~~--~~~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~~g~~ 177 (499)
+|+.|+++++++++ ..+....++.. ....+.+++++|++.+. .+.++++|||||||++.+. +++.
T Consensus 200 ~L~~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~-~~~~ 278 (508)
T 3fho_A 200 ELARQIMDVVTEMGKYTEVKTAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQ-QGLG 278 (508)
T ss_dssp HHHHHHHHHHHHHSTTSSCCEEC----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC---CH
T ss_pred HHHHHHHHHHHHhCCccCeeEEEEeCCcccccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhccc-CCcH
Confidence 99999999999753 33333333222 22336789999997642 2578999999999999862 2332
Q ss_pred -HHHHHhccccccceEeecCCCchH-HHHHHHHcC-CeEEEEeeeecCCCCc-------------ccccc-ccccccCCC
Q 010836 178 -FTRALLGICANELHLCGDPAAVPL-IQQILQVTG-DDVKVQSYERLSPLVP-------------LNVPL-GSFSNIQTG 240 (499)
Q Consensus 178 -~~~~ll~l~~~~~~~~~~~~~~~~-~~~l~~~~~-~~~~~~~~~~~~~~~~-------------~~~~l-~~l~~~~~~ 240 (499)
....+........++++.+++.+. ...+..... ....+........... ....+ ..+.....+
T Consensus 279 ~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~ 358 (508)
T 3fho_A 279 DQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIG 358 (508)
T ss_dssp HHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC--CHHHHHHHHHHHC---CC
T ss_pred HHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECCchHHHHHHHHHHHHhcCCC
Confidence 233344444445666666666542 444444332 2222211100000000 00001 112233556
Q ss_pred CEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccc
Q 010836 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMK 318 (499)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~ 318 (499)
+++||+ +++.++.+++.|.+.+. .+..+||+++.++|..+++.|++ |+.+|||||+++++|+|+| +++||+++.+
T Consensus 359 ~~LVF~~s~~~a~~l~~~L~~~~~-~v~~~hg~~~~~~R~~il~~f~~--g~~~VLVaT~~l~~GiDip~v~~VI~~~~p 435 (508)
T 3fho_A 359 QSIIFCKKKDTAEEIARRMTADGH-TVACLTGNLEGAQRDAIMDSFRV--GTSKVLVTTNVIARGIDVSQVNLVVNYDMP 435 (508)
T ss_dssp CEEEBCSSTTTTTHHHHHHTTTTC-CCCEEC-----CTTGGGTHHHHS--SSCCCCEECC-----CCCTTCCEEEC----
T ss_pred cEEEEECCHHHHHHHHHHHHhCCC-cEEEEeCCCCHHHHHHHHHHHHC--CCCeEEEeCChhhcCCCccCCCEEEEECCC
Confidence 777777 89999999999988766 89999999999999999999999 9999999999999999997 9999999884
Q ss_pred cccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC--C---HHHHHhhhCCCCchhh
Q 010836 319 KFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE--D---LPLLHKSLLEPSPMLE 375 (499)
Q Consensus 319 ~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~--~---~~~~~~~~~~~~~~i~ 375 (499)
.+... ..+..+|+||+||+||.|.. |.++.+..+ + ...+++++.....++.
T Consensus 436 ~~~~~---~~s~~~~~Qr~GRagR~g~~---g~~i~l~~~~~~~~~~~~i~~~~~~~i~~l~ 491 (508)
T 3fho_A 436 LDQAG---RPDPQTYLHRIGRTGRFGRV---GVSINFVHDKKSWEEMNAIQEYFQRPITRVP 491 (508)
T ss_dssp CC--------CTHHHHHTTSCCC--------CEEEEEECTTTSSSSHHHHHHHSCCCCC---
T ss_pred CcccC---CCCHHHHHHHhhhcCCCCCC---cEEEEEEeChHHHHHHHHHHHHHCCCcccCC
Confidence 32110 15899999999999999976 777666543 2 3455666665555443
No 28
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=2.5e-34 Score=294.22 Aligned_cols=285 Identities=16% Similarity=0.148 Sum_probs=199.0
Q ss_pred HHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHH
Q 010836 44 IIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVA 118 (499)
Q Consensus 44 ~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~r~La~q~~ 118 (499)
.+.+++++. +++ .|+++|. +++.+ ++++++++++|||||||++++.++. .+++++|++||++|+.|++
T Consensus 9 ~~~~~l~~~----~~~-~~~~~Q~~~i~~i--~~~~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~ 81 (414)
T 3oiy_A 9 DFRSFFKKK----FGK-DLTGYQRLWAKRI--VQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTL 81 (414)
T ss_dssp HHHHHHHHH----HSS-CCCHHHHHHHHHH--TTTCCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHH
T ss_pred HHHHHHHHh----cCC-CCCHHHHHHHHHH--hcCCCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHH
Confidence 344555543 245 7999999 99998 6689999999999999998755433 4678999999999999999
Q ss_pred HHHHh---cCCceeEeeCCeecc----------cCCCceEEEceeecc------ccCCccEEEEecCcccCCCC------
Q 010836 119 KRLNK---ANVSCDLITGQEREE----------VDGAKHRAVTVEMAD------VVSDYDCAVIDEIQMLGCKT------ 173 (499)
Q Consensus 119 ~~l~~---~g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~------~l~~~~~iViDEah~~~~~~------ 173 (499)
+++++ .|+++..++|+.... ....+++++||+.+. .+.+++++|+||||++.+..
T Consensus 82 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~ 161 (414)
T 3oiy_A 82 ERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTL 161 (414)
T ss_dssp HHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHH
T ss_pred HHHHHHccCCceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhH
Confidence 99998 477899998876431 123789999997662 24789999999999876321
Q ss_pred ---CChhH--HHHHhcccc-----------ccceEeecCCC-ch------HHHHHHHHcCCe-----EEEEeeeecCCCC
Q 010836 174 ---RGFSF--TRALLGICA-----------NELHLCGDPAA-VP------LIQQILQVTGDD-----VKVQSYERLSPLV 225 (499)
Q Consensus 174 ---~g~~~--~~~ll~l~~-----------~~~~~~~~~~~-~~------~~~~l~~~~~~~-----~~~~~~~~~~~~~ 225 (499)
.|+.. ...++...+ ...++++.+++ .+ ....+....... ..+...... ..
T Consensus 162 l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~ 239 (414)
T 3oiy_A 162 LMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRIS--SR 239 (414)
T ss_dssp HHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSCCCCCCCSEEEEEES--SC
T ss_pred HhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCccccccccchheeec--cC
Confidence 23221 222333222 44566666655 22 222222210000 001111000 01
Q ss_pred cccccc-ccccccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEE-EEcCCCCHHHHHHHHHHhcCCCCCccEEEe----c
Q 010836 226 PLNVPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCS-IVYGSLPPETRTRQATRFNDASSEFDVLVA----S 298 (499)
Q Consensus 226 ~~~~~l-~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~-~~hg~l~~~~R~~~~~~f~~~~g~~~iLva----T 298 (499)
....+ ..+.. .++.++||+ +++.++.+++.|++.+. .+. .+||. +|. ++.|++ |+.+|||| |
T Consensus 240 -~~~~l~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~~~h~~----~r~--~~~f~~--g~~~vLvat~s~T 308 (414)
T 3oiy_A 240 -SKEKLVELLEI-FRDGILIFAQTEEEGKELYEYLKRFKF-NVGETWSEF----EKN--FEDFKV--GKINILIGVQAYY 308 (414)
T ss_dssp -CHHHHHHHHHH-HCSSEEEEESSHHHHHHHHHHHHHTTC-CEEESSSCH----HHH--HHHHHT--TSCSEEEEECCTT
T ss_pred -HHHHHHHHHHH-cCCCEEEEECCHHHHHHHHHHHHHcCC-ceehhhcCc----chH--HHHHhC--CCCeEEEEecCcC
Confidence 11111 22222 346677777 89999999999999876 777 88984 344 999999 99999999 9
Q ss_pred chhhcccccc--ccEEEEcccccccCccccc--cChhhHHhhhccCCCCCCCC-CcEEEEEEcC
Q 010836 299 DAIGMGLNLN--ISRIIFSTMKKFDGVELRD--LTVPEVKQIAGRAGRYGSKF-PVGEVTCLDS 357 (499)
Q Consensus 299 ~~~~~Gidip--v~~VI~~~~~~~~~~~~~p--~s~~~~~Qr~GRagR~g~~~-~~g~~~~~~~ 357 (499)
+++++|+|+| +++||+++. | .+..+|+||+||+||.|.++ ..|.++.+.+
T Consensus 309 ~~~~~GiDip~~v~~VI~~~~---------p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~ 363 (414)
T 3oiy_A 309 GKLTRGVDLPERIKYVIFWGT---------PSGPDVYTYIQASGRSSRILNGVLVKGVSVIFEE 363 (414)
T ss_dssp CCCCCCCCCTTTCCEEEEESC---------CTTTCHHHHHHHHGGGCCEETTEECCEEEEEECC
T ss_pred chhhccCccccccCEEEEECC---------CCCCCHHHHHHHhCccccCCCCCCcceEEEEEEc
Confidence 9999999996 799999999 6 69999999999999998521 1399988883
No 29
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=100.00 E-value=7e-34 Score=293.32 Aligned_cols=283 Identities=16% Similarity=0.110 Sum_probs=187.6
Q ss_pred cCCCCCchhccchHHHhcCCceE-EEEccCCccHHHHHHHHH-----HcCCCEEEEccHHHHHHHHHHHHHhcCCceeEe
Q 010836 58 DFTDLTRPHTWYPLARKKVRKVI-LHVGPTNSGKTHQALSRL-----ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLI 131 (499)
Q Consensus 58 ~~~~l~~~q~~~~~~~~~~~~~v-li~apTGsGKT~~~l~~l-----~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~ 131 (499)
|+..++++|+++|.+ ++++++ +++||||||||++++.++ ..+++++|++|||+||.|+++.+. |..+...
T Consensus 1 G~~q~~~iq~~i~~~--l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~--g~~v~~~ 76 (451)
T 2jlq_A 1 GSAMGEPDYEVDEDI--FRKKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALR--GLPIRYQ 76 (451)
T ss_dssp CCCCCSCCCCCCGGG--GSTTCEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT--TSCEEEC
T ss_pred CCCCCCCcHHHHHHH--HhcCCeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhc--Cceeeee
Confidence 577899999999987 445555 999999999999864443 245689999999999999999886 4444443
Q ss_pred eCCee-cccCCCceEEEceeecc-------ccCCccEEEEecCcccCCCCCChhHHHHHhccccccceEeecCCCchHHH
Q 010836 132 TGQER-EEVDGAKHRAVTVEMAD-------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLIQ 203 (499)
Q Consensus 132 ~g~~~-~~~~~~~~iv~T~e~~~-------~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~~~~~ 203 (499)
.+... ....+..+.++|++.+. .+.+++++||||||++ +...................+++..+++.+..
T Consensus 77 ~~~~~~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~- 154 (451)
T 2jlq_A 77 TPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGS- 154 (451)
T ss_dssp CTTCSCCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEEEEECSSCTTC-
T ss_pred eccccccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceEEEEccCCCcc-
Confidence 33322 22234567788876542 3688999999999987 22111111111111122345666666665321
Q ss_pred HHHHHcCCeEEEEeeeecCCCCccccccccccccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHH
Q 010836 204 QILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQA 282 (499)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~ 282 (499)
..........+....+..+..........+.+ ..++++||+ +++.++.+++.|++.+. .+..+||++. .+++
T Consensus 155 -~~~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~g~-~~~~lh~~~~----~~~~ 227 (451)
T 2jlq_A 155 -TDPFPQSNSPIEDIEREIPERSWNTGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSGK-RVIQLSRKTF----DTEY 227 (451)
T ss_dssp -CCSSCCCSSCEEEEECCCCSSCCSSSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHTTTC-CEEEECTTTH----HHHG
T ss_pred -chhhhcCCCceEecCccCCchhhHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHHHHHcCC-eEEECCHHHH----HHHH
Confidence 11111111112222222221111111122222 356777777 89999999999998876 8999999764 4788
Q ss_pred HHhcCCCCCccEEEecchhhccccccccEEEEccccc---c--cCcc------ccccChhhHHhhhccCCCCCC-CCCcE
Q 010836 283 TRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK---F--DGVE------LRDLTVPEVKQIAGRAGRYGS-KFPVG 350 (499)
Q Consensus 283 ~~f~~~~g~~~iLvaT~~~~~Gidipv~~VI~~~~~~---~--~~~~------~~p~s~~~~~Qr~GRagR~g~-~~~~g 350 (499)
+.|++ |+.+|||||+++++|+|+|.++||+++..+ | ++.. ..|.+..+|+||+|||||.|. . |
T Consensus 228 ~~f~~--g~~~vLVaT~v~~~GiDip~~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~---g 302 (451)
T 2jlq_A 228 PKTKL--TDWDFVVTTDISEMGANFRAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQE---D 302 (451)
T ss_dssp GGGGS--SCCSEEEECGGGGSSCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCC---C
T ss_pred Hhhcc--CCceEEEECCHHHhCcCCCCCEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCCCCC---c
Confidence 99999 999999999999999999779999988322 1 1110 158899999999999999997 4 6
Q ss_pred EEEEEcCC
Q 010836 351 EVTCLDSE 358 (499)
Q Consensus 351 ~~~~~~~~ 358 (499)
.|+.+...
T Consensus 303 ~~~~~~~~ 310 (451)
T 2jlq_A 303 DQYVFSGD 310 (451)
T ss_dssp EEEEECSC
T ss_pred cEEEEeCC
Confidence 77777643
No 30
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=100.00 E-value=4.6e-33 Score=295.99 Aligned_cols=281 Identities=15% Similarity=0.093 Sum_probs=187.9
Q ss_pred CCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-----cCCCEEEEccHHHHHHHHHHHHHhcCCceeEee
Q 010836 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLIT 132 (499)
Q Consensus 59 ~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~-----~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~ 132 (499)
...++++|+ .+|.+ +++++++++||||||||++++.+++ .+.+++|++|||+||.|+++.+.. ..+.+..
T Consensus 169 ~~~~lpiq~~~i~~l--~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~--~~v~~~~ 244 (618)
T 2whx_A 169 ERIGEPDYEVDEDIF--RKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRG--LPIRYQT 244 (618)
T ss_dssp CCCCCCCCCCCGGGG--STTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT--SCEEECC
T ss_pred cccCCCccccCHHHH--hcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcC--CceeEec
Confidence 367888888 88877 6799999999999999999743332 356899999999999999998873 4444322
Q ss_pred CCe-ecccCCCceEEEceeecc-------ccCCccEEEEecCcccCCCCCChhHHHHHhccccccceEeecCCCchHH-H
Q 010836 133 GQE-REEVDGAKHRAVTVEMAD-------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVPLI-Q 203 (499)
Q Consensus 133 g~~-~~~~~~~~~iv~T~e~~~-------~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~~~~-~ 203 (499)
+.. .....+..+.++|...+. .+.+++++||||||++ +......+..++..+.....+++..+++.+.. .
T Consensus 245 ~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~i~~~l~~~~~q~il~SAT~~~~~~ 323 (618)
T 2whx_A 245 PAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAAIFMTATPPGSTD 323 (618)
T ss_dssp TTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-SHHHHHHHHHHHHHHHHTSCEEEEECSSCTTCCC
T ss_pred ccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCC-CccHHHHHHHHHHHhcccCccEEEEECCCchhhh
Confidence 221 111223344456654432 3689999999999998 32111112222222222456666666665321 1
Q ss_pred HHHHHcCCeEEEEeeeecCCCCccccccccccccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHH
Q 010836 204 QILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQA 282 (499)
Q Consensus 204 ~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~ 282 (499)
.+.......+.+.. ..+.......+..+.+ ..+++|||+ |++.++.+++.|++.+. .+..+||+ +|.+++
T Consensus 324 ~~~~~~~~~~~v~~---~~~~~~~~~ll~~l~~-~~~~~LVF~~s~~~a~~l~~~L~~~g~-~v~~lhg~----~R~~~l 394 (618)
T 2whx_A 324 PFPQSNSPIEDIER---EIPERSWNTGFDWITD-YQGKTVWFVPSIKAGNDIANCLRKSGK-RVIQLSRK----TFDTEY 394 (618)
T ss_dssp SSCCCSSCEEEEEC---CCCSSCCSSSCHHHHH-CCSCEEEECSSHHHHHHHHHHHHHTTC-CEEEECTT----THHHHT
T ss_pred hhhccCCceeeecc---cCCHHHHHHHHHHHHh-CCCCEEEEECChhHHHHHHHHHHHcCC-cEEEEChH----HHHHHH
Confidence 12221111122211 1111111222223332 366788887 99999999999999876 89999984 677899
Q ss_pred HHhcCCCCCccEEEecchhhccccccccEEEEcccccc-----cCc------cccccChhhHHhhhccCCCCCCCCCcEE
Q 010836 283 TRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKKF-----DGV------ELRDLTVPEVKQIAGRAGRYGSKFPVGE 351 (499)
Q Consensus 283 ~~f~~~~g~~~iLvaT~~~~~Gidipv~~VI~~~~~~~-----~~~------~~~p~s~~~~~Qr~GRagR~g~~~~~g~ 351 (499)
+.|++ |+.+||||||++++|+|+|+++||+++..+. +.. ...|.+.++|+||+||+||.|. ..|.
T Consensus 395 ~~F~~--g~~~VLVaTdv~~rGiDi~v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~--~~G~ 470 (618)
T 2whx_A 395 PKTKL--TDWDFVVTTDISEMGANFRAGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA--QEDD 470 (618)
T ss_dssp THHHH--SCCSEEEECGGGGTTCCCCCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTT--CCCE
T ss_pred HhhcC--CCcEEEEECcHHHcCcccCceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCCCC--CCCe
Confidence 99999 9999999999999999999999988776321 110 1347899999999999999975 1277
Q ss_pred EEEEcC
Q 010836 352 VTCLDS 357 (499)
Q Consensus 352 ~~~~~~ 357 (499)
++.+..
T Consensus 471 ai~l~~ 476 (618)
T 2whx_A 471 QYVFSG 476 (618)
T ss_dssp EEEECS
T ss_pred EEEEcc
Confidence 877764
No 31
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=100.00 E-value=7.8e-33 Score=291.90 Aligned_cols=273 Identities=16% Similarity=0.116 Sum_probs=184.6
Q ss_pred CchhccchHHHhcCCceEEEEccCCccHHHHHHHHHHcCC-CEEEEccHHHHHHHHHHHHHh-cCCceeEeeCCeecccC
Q 010836 63 TRPHTWYPLARKKVRKVILHVGPTNSGKTHQALSRLESSS-SGIYCGPLRLLAWEVAKRLNK-ANVSCDLITGQEREEVD 140 (499)
Q Consensus 63 ~~~q~~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~~~-~~l~l~P~r~La~q~~~~l~~-~g~~~~~~~g~~~~~~~ 140 (499)
...|+.++.+. .++++++++||||||||++++.++.+.+ +++|++|||+||.|+++++.+ ++..++..+|+.. ...
T Consensus 219 ~~~q~~i~~~L-~~~~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~vG~~~-~~~ 296 (666)
T 3o8b_A 219 FTDNSSPPAVP-QSFQVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGVRT-ITT 296 (666)
T ss_dssp CCCCCSCCCCC-SSCEEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEECSSCE-ECC
T ss_pred HHHHHHHHHHH-HcCCeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhCCCeeEEECcEe-ccC
Confidence 34455444332 4689999999999999999988887765 899999999999999999874 5888888888755 335
Q ss_pred CCceEEEceeecc-----ccCCccEEEEecCcccCCCCCChh--HHHHHhccccccc-eEeecCCCchHHHHHHHHcCCe
Q 010836 141 GAKHRAVTVEMAD-----VVSDYDCAVIDEIQMLGCKTRGFS--FTRALLGICANEL-HLCGDPAAVPLIQQILQVTGDD 212 (499)
Q Consensus 141 ~~~~iv~T~e~~~-----~l~~~~~iViDEah~~~~~~~g~~--~~~~ll~l~~~~~-~~~~~~~~~~~~~~l~~~~~~~ 212 (499)
+.+++++||+.+- .+.+++++||||||++.. ++. +..++-.+..... .++..+++.+.. .......
T Consensus 297 ~~~IlV~TPGrLl~~~~l~l~~l~~lVlDEAH~l~~---~~~~~l~~Il~~l~~~~~~llil~SAT~~~~---i~~~~p~ 370 (666)
T 3o8b_A 297 GAPVTYSTYGKFLADGGCSGGAYDIIICDECHSTDS---TTILGIGTVLDQAETAGARLVVLATATPPGS---VTVPHPN 370 (666)
T ss_dssp CCSEEEEEHHHHHHTTSCCTTSCSEEEETTTTCCSH---HHHHHHHHHHHHTTTTTCSEEEEEESSCTTC---CCCCCTT
T ss_pred CCCEEEECcHHHHhCCCcccCcccEEEEccchhcCc---cHHHHHHHHHHhhhhcCCceEEEECCCCCcc---cccCCcc
Confidence 6789999997651 246799999999998753 222 2222222222221 223334443321 1111111
Q ss_pred EEEEeeeecCCCCccccccccccccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCC
Q 010836 213 VKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSE 291 (499)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~ 291 (499)
.................. ..+.....+++|||+ ++++++++++.|++.+. .+..+||++++++ |++ +.
T Consensus 371 i~~v~~~~~~~i~~~~~~-~~l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~-~v~~lHG~l~q~e-------r~~--~~ 439 (666)
T 3o8b_A 371 IEEVALSNTGEIPFYGKA-IPIEAIRGGRHLIFCHSKKKCDELAAKLSGLGI-NAVAYYRGLDVSV-------IPT--IG 439 (666)
T ss_dssp EEEEECBSCSSEEETTEE-ECGGGSSSSEEEEECSCHHHHHHHHHHHHTTTC-CEEEECTTSCGGG-------SCS--SS
T ss_pred eEEEeecccchhHHHHhh-hhhhhccCCcEEEEeCCHHHHHHHHHHHHhCCC-cEEEecCCCCHHH-------HHh--CC
Confidence 110000000001111111 112334567788887 89999999999998876 8999999999874 455 66
Q ss_pred ccEEEecchhhccccccccEEEEccccc-------ccCc-----cccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 292 FDVLVASDAIGMGLNLNISRIIFSTMKK-------FDGV-----ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 292 ~~iLvaT~~~~~Gidipv~~VI~~~~~~-------~~~~-----~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
.+||||||++++|||+|+++||+++..+ ||+. ...|.+.++|+||+||+|| |.. |. +.+..++
T Consensus 440 ~~VLVATdVaerGIDIdV~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR-g~~---G~-i~lvt~~ 514 (666)
T 3o8b_A 440 DVVVVATDALMTGYTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR-GRR---GI-YRFVTPG 514 (666)
T ss_dssp CEEEEECTTHHHHCCCCBSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS-SSC---EE-EEESCCC
T ss_pred CcEEEECChHHccCCCCCcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC-CCC---CE-EEEEecc
Confidence 6999999999999999999999776443 3332 1258899999999999999 666 88 6666543
No 32
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=5.2e-33 Score=303.14 Aligned_cols=283 Identities=18% Similarity=0.149 Sum_probs=166.0
Q ss_pred ccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----cC-----CCEEEEccHHHHHHHHHHHHHhc--
Q 010836 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SS-----SSGIYCGPLRLLAWEVAKRLNKA-- 124 (499)
Q Consensus 57 ~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~----~~-----~~~l~l~P~r~La~q~~~~l~~~-- 124 (499)
+|+..|+++|. +++.+ +.++++++++|||||||++++.++. .. +++||++||++|+.|+.+.+.++
T Consensus 9 ~g~~~lr~~Q~~~i~~~--l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~ 86 (696)
T 2ykg_A 9 YSPFKPRNYQLELALPA--MKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFE 86 (696)
T ss_dssp TC--CCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred cCCCCccHHHHHHHHHH--HcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhc
Confidence 39999999999 99988 5689999999999999999865553 22 68899999999999999999875
Q ss_pred --CCceeEeeCCeeccc------CCCceEEEceeecc---------ccCCccEEEEecCcccCCCCCChhHHHHHh----
Q 010836 125 --NVSCDLITGQEREEV------DGAKHRAVTVEMAD---------VVSDYDCAVIDEIQMLGCKTRGFSFTRALL---- 183 (499)
Q Consensus 125 --g~~~~~~~g~~~~~~------~~~~~iv~T~e~~~---------~l~~~~~iViDEah~~~~~~~g~~~~~~ll---- 183 (499)
++++..++|+..... .+..++++||+.+. .+.+++++||||||++... . .+...+.
T Consensus 87 ~~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~--~-~~~~i~~~~l~ 163 (696)
T 2ykg_A 87 RHGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQ--H-PYNMIMFNYLD 163 (696)
T ss_dssp TTTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTT--C-HHHHHHHHHHH
T ss_pred cCCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCc--c-cHHHHHHHHHH
Confidence 788888888754321 36789999997651 3577899999999999853 2 2222221
Q ss_pred ----ccccccceEeecCCCch---------HHHHHHHHc---CCeE-------------------E-EEeeeecCC----
Q 010836 184 ----GICANELHLCGDPAAVP---------LIQQILQVT---GDDV-------------------K-VQSYERLSP---- 223 (499)
Q Consensus 184 ----~l~~~~~~~~~~~~~~~---------~~~~l~~~~---~~~~-------------------~-~~~~~~~~~---- 223 (499)
.......++++.+++.. ....+.... .... . ...+.....
T Consensus 164 ~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~fs 243 (696)
T 2ykg_A 164 QKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRISDKFK 243 (696)
T ss_dssp HHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSCCHHH
T ss_pred HhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccCChHH
Confidence 11123455556555542 122222111 0000 0 000000000
Q ss_pred --------------------------------------------------------------------------------
Q 010836 224 -------------------------------------------------------------------------------- 223 (499)
Q Consensus 224 -------------------------------------------------------------------------------- 223 (499)
T Consensus 244 ~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~ 323 (696)
T 2ykg_A 244 YIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKYNDAL 323 (696)
T ss_dssp HHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhHHH
Confidence
Q ss_pred ------------------------------------------------------CCcccccc-cccccc----CCCCEEE
Q 010836 224 ------------------------------------------------------LVPLNVPL-GSFSNI----QTGDCIV 244 (499)
Q Consensus 224 ------------------------------------------------------~~~~~~~l-~~l~~~----~~~~~iv 244 (499)
.......+ ..+... ..+.+||
T Consensus 324 ~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~~~II 403 (696)
T 2ykg_A 324 IISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPETITIL 403 (696)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTCCEEE
T ss_pred hccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCCcEEE
Confidence 00000000 111111 3456787
Q ss_pred Ee-eHHHHHHHHHHHHHcCC---CeEEEE--------cCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccE
Q 010836 245 TF-SRHAIYRLKKAIESRGK---HLCSIV--------YGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISR 311 (499)
Q Consensus 245 ~~-s~~~~~~l~~~L~~~~~---~~v~~~--------hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~ 311 (499)
|+ +++.++.+++.|++.+. .++..+ ||+|++++|.++++.|++ +|+.+|||||+++++|||+| +++
T Consensus 404 F~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~-~g~~~vLVaT~v~~~GiDip~v~~ 482 (696)
T 2ykg_A 404 FVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKA-SGDHNILIATSVADEGIDIAQCNL 482 (696)
T ss_dssp ECSCHHHHHHHHHHHHHCTTCCSCCEEC------------------------------CCSCSEEEESSCCC---CCCSE
T ss_pred EeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHh-cCCccEEEEechhhcCCcCccCCE
Confidence 77 89999999999998762 367777 569999999999999984 27889999999999999997 999
Q ss_pred EEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 312 VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
||+++. |.+..+|+||+|| ||... |.|+.+.+++
T Consensus 483 VI~~d~---------p~s~~~~~Qr~GR-GR~~~----g~~~~l~~~~ 516 (696)
T 2ykg_A 483 VILYEY---------VGNVIKMIQTRGR-GRARG----SKCFLLTSNA 516 (696)
T ss_dssp EEEESC---------C--CCCC----------CC----CEEEEEESCH
T ss_pred EEEeCC---------CCCHHHHHHhhcc-CcCCC----ceEEEEecCC
Confidence 999999 7799999999999 99844 7888887764
No 33
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.98 E-value=1.5e-32 Score=291.57 Aligned_cols=282 Identities=16% Similarity=0.146 Sum_probs=154.4
Q ss_pred cCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----c-----CCCEEEEccHHHHHHHHHHHHHhc---
Q 010836 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S-----SSSGIYCGPLRLLAWEVAKRLNKA--- 124 (499)
Q Consensus 58 ~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~----~-----~~~~l~l~P~r~La~q~~~~l~~~--- 124 (499)
+...|+++|. +++.+ ++++++++.+|||||||++++.++. . ++++||++|+++|+.|+++.+.++
T Consensus 4 ~~~~~~~~Q~~~i~~~--~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 81 (556)
T 4a2p_A 4 ETKKARSYQIELAQPA--INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 81 (556)
T ss_dssp ----CCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCCHHHHHHHHHH--HcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4567999999 99988 5589999999999999999865543 2 568899999999999999999875
Q ss_pred -CCceeEeeCCeeccc------CCCceEEEceeecc---------ccCCccEEEEecCcccCCCCCChhHHHHHhccc--
Q 010836 125 -NVSCDLITGQEREEV------DGAKHRAVTVEMAD---------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC-- 186 (499)
Q Consensus 125 -g~~~~~~~g~~~~~~------~~~~~iv~T~e~~~---------~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~-- 186 (499)
++.+..++|+..... .+.+++|+||+.+. .+.+++++||||||++.+. +. +...+..+.
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~--~~-~~~~~~~~~~~ 158 (556)
T 4a2p_A 82 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN--HP-YNVLMTRYLEQ 158 (556)
T ss_dssp GTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTT--SH-HHHHHHHHHHH
T ss_pred cCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCc--ch-HHHHHHHHHHh
Confidence 899999999764332 25789999997653 4678999999999999854 43 222211111
Q ss_pred -----cccceEeecCCCc------------hHHHHHHHHcCCeE--------------------EEEeeee-cCC-----
Q 010836 187 -----ANELHLCGDPAAV------------PLIQQILQVTGDDV--------------------KVQSYER-LSP----- 223 (499)
Q Consensus 187 -----~~~~~~~~~~~~~------------~~~~~l~~~~~~~~--------------------~~~~~~~-~~~----- 223 (499)
....++++.+++. ..+..+....+... ....+.. ...
T Consensus 159 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (556)
T 4a2p_A 159 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 238 (556)
T ss_dssp HHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHH
T ss_pred hhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHH
Confidence 2334555555554 22222222222110 0000000 000
Q ss_pred ----------------------------C---------------------------------------------------
Q 010836 224 ----------------------------L--------------------------------------------------- 224 (499)
Q Consensus 224 ----------------------------~--------------------------------------------------- 224 (499)
.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 318 (556)
T 4a2p_A 239 ISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 318 (556)
T ss_dssp HHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0
Q ss_pred ----------------------------------------------------Ccccccc-ccccc----cCCCCEEEEe-
Q 010836 225 ----------------------------------------------------VPLNVPL-GSFSN----IQTGDCIVTF- 246 (499)
Q Consensus 225 ----------------------------------------------------~~~~~~l-~~l~~----~~~~~~iv~~- 246 (499)
..+...+ ..+.+ .....+|||+
T Consensus 319 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~ 398 (556)
T 4a2p_A 319 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 398 (556)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEES
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 0000000 01111 2346677777
Q ss_pred eHHHHHHHHHHHHHcC-----------CCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEE
Q 010836 247 SRHAIYRLKKAIESRG-----------KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIF 314 (499)
Q Consensus 247 s~~~~~~l~~~L~~~~-----------~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~ 314 (499)
+++.++.+++.|++.. +.....+||++++++|..+++.|++ +|+.+|||||+++++|+|+| +++||+
T Consensus 399 ~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~-~g~~~vLvaT~~~~~GiDip~v~~VI~ 477 (556)
T 4a2p_A 399 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT-SKDNRLLIATSVADEGIDIVQCNLVVL 477 (556)
T ss_dssp SHHHHHHHHHHHTTCSGGGSCCEEC-------------------------------CCEEEEEC-----------CEEEE
T ss_pred cHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcc-cCceEEEEEcCchhcCCCchhCCEEEE
Confidence 8999999999998751 2245667889999999999999996 36789999999999999997 999999
Q ss_pred cccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 315 ~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
++. |.+...|+||+|| ||... |.|+.+..++
T Consensus 478 ~d~---------p~s~~~~~Qr~GR-gR~~~----g~~~~l~~~~ 508 (556)
T 4a2p_A 478 YEY---------SGNVTKMIQVRGR-GRAAG----SKCILVTSKT 508 (556)
T ss_dssp ETC---------CSCHHHHHHC-------------CCEEEEESCH
T ss_pred eCC---------CCCHHHHHHhcCC-CCCCC----ceEEEEEeCc
Confidence 999 7799999999999 99954 7888777654
No 34
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.98 E-value=3.8e-32 Score=288.17 Aligned_cols=280 Identities=16% Similarity=0.134 Sum_probs=177.0
Q ss_pred CCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----c-----CCCEEEEccHHHHHHHHHHHHHhc----C
Q 010836 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S-----SSSGIYCGPLRLLAWEVAKRLNKA----N 125 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~----~-----~~~~l~l~P~r~La~q~~~~l~~~----g 125 (499)
..|+++|. +++.+ ++++++++.+|||||||++++.++. . ++++||++|+++|+.|+++.+.++ +
T Consensus 3 ~~~~~~Q~~~i~~~--~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 80 (555)
T 3tbk_A 3 LKPRNYQLELALPA--KKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLG 80 (555)
T ss_dssp CCCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTT
T ss_pred CCCcHHHHHHHHHH--hCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 36899999 99988 5689999999999999999855543 2 668899999999999999999865 8
Q ss_pred CceeEeeCCeeccc------CCCceEEEceeecc---------ccCCccEEEEecCcccCCCCCChhHHHHHhccc----
Q 010836 126 VSCDLITGQEREEV------DGAKHRAVTVEMAD---------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC---- 186 (499)
Q Consensus 126 ~~~~~~~g~~~~~~------~~~~~iv~T~e~~~---------~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~---- 186 (499)
+.+..++|+..... .+.+++++||+.+. .+.+++++||||||++.+. +. +...+....
T Consensus 81 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~--~~-~~~~~~~~~~~~~ 157 (555)
T 3tbk_A 81 YNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKN--HP-YNQIMFRYLDHKL 157 (555)
T ss_dssp CCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTT--CH-HHHHHHHHHHHHT
T ss_pred cEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCc--ch-HHHHHHHHHHhhh
Confidence 99999999764432 24789999996652 4577899999999999864 32 332221111
Q ss_pred ----cccceEeecCCCc------------hHHHHHHHHcCCe-EEE-------------------EeeeecCC-------
Q 010836 187 ----ANELHLCGDPAAV------------PLIQQILQVTGDD-VKV-------------------QSYERLSP------- 223 (499)
Q Consensus 187 ----~~~~~~~~~~~~~------------~~~~~l~~~~~~~-~~~-------------------~~~~~~~~------- 223 (499)
....++++.+++. ..+..+....+.. +.. ..+....+
T Consensus 158 ~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
T 3tbk_A 158 GESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASRTSNTFKCII 237 (555)
T ss_dssp SSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHHHHH
T ss_pred ccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHHhhcCCCceEEEEecCcccChHHHHH
Confidence 1234556655554 2223333333311 110 00000000
Q ss_pred --------------------------C-----------------------------------------------------
Q 010836 224 --------------------------L----------------------------------------------------- 224 (499)
Q Consensus 224 --------------------------~----------------------------------------------------- 224 (499)
.
T Consensus 238 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 317 (555)
T 3tbk_A 238 SQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDALIIS 317 (555)
T ss_dssp HHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0
Q ss_pred ----------------------------------------------------Ccccccc-ccccc----cCCCCEEEEe-
Q 010836 225 ----------------------------------------------------VPLNVPL-GSFSN----IQTGDCIVTF- 246 (499)
Q Consensus 225 ----------------------------------------------------~~~~~~l-~~l~~----~~~~~~iv~~- 246 (499)
..+...+ ..+.. ...+.+|||+
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~ 397 (555)
T 3tbk_A 318 EDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTILFVK 397 (555)
T ss_dssp HHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEEECS
T ss_pred hhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEEEeC
Confidence 0000000 00001 1346778787
Q ss_pred eHHHHHHHHHHHHHcC-----------CCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEE
Q 010836 247 SRHAIYRLKKAIESRG-----------KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIF 314 (499)
Q Consensus 247 s~~~~~~l~~~L~~~~-----------~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~ 314 (499)
+++.++.+++.|.+.+ +.....+||+|++++|.++++.|++ +|+.+|||||+++++|+|+| +++||+
T Consensus 398 ~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~-~g~~~vLvaT~~~~~GlDlp~v~~VI~ 476 (555)
T 3tbk_A 398 TRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRA-SGDNNILIATSVADEGIDIAECNLVIL 476 (555)
T ss_dssp SHHHHHHHHHHHHHCGGGTTCCEEECCC---------------------------CCSEEEECCCTTCCEETTSCSEEEE
T ss_pred cHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhc-CCCeeEEEEcchhhcCCccccCCEEEE
Confidence 8999999999998864 2245566779999999999999996 36789999999999999997 999999
Q ss_pred cccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 315 ~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
++. |.+...|+||+|| ||. .. |.++.+..++
T Consensus 477 ~d~---------p~s~~~~~Qr~GR-gR~-~~---g~~~~l~~~~ 507 (555)
T 3tbk_A 477 YEY---------VGNVIKMIQTRGR-GRA-RD---SKCFLLTSSA 507 (555)
T ss_dssp ESC---------CSSCCCEECSSCC-CTT-TS---CEEEEEESCH
T ss_pred eCC---------CCCHHHHHHhcCc-CcC-CC---ceEEEEEcCC
Confidence 999 7799999999999 998 44 8888887665
No 35
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.98 E-value=2.2e-32 Score=298.25 Aligned_cols=281 Identities=17% Similarity=0.155 Sum_probs=186.9
Q ss_pred CCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc------C----CCEEEEccHHHHHHHH-HHHHHhcC--
Q 010836 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES------S----SSGIYCGPLRLLAWEV-AKRLNKAN-- 125 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~------~----~~~l~l~P~r~La~q~-~~~l~~~g-- 125 (499)
..|++.|. +++.+ ++++++++.+|||+|||++++.++.. . +++||++|+++|+.|+ ++++++++
T Consensus 6 ~~l~~~Q~~~i~~i--l~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~~~ 83 (699)
T 4gl2_A 6 LQLRPYQMEVAQPA--LEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLKK 83 (699)
T ss_dssp -CCCHHHHHHHHHH--HSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHHTT
T ss_pred CCccHHHHHHHHHH--HhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHHcCc
Confidence 57899999 99988 55899999999999999998655532 2 7899999999999999 99998753
Q ss_pred -CceeEeeCCeeccc------CCCceEEEceeecc--------------ccCCccEEEEecCcccCCCCCChhH-HHHHh
Q 010836 126 -VSCDLITGQEREEV------DGAKHRAVTVEMAD--------------VVSDYDCAVIDEIQMLGCKTRGFSF-TRALL 183 (499)
Q Consensus 126 -~~~~~~~g~~~~~~------~~~~~iv~T~e~~~--------------~l~~~~~iViDEah~~~~~~~g~~~-~~~ll 183 (499)
+.+..++|+..... ...+++++||+.+. .+.++++|||||||++......... ...+.
T Consensus 84 ~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i~~~~l~ 163 (699)
T 4gl2_A 84 WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 163 (699)
T ss_dssp TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSHHHHHHH
T ss_pred CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHHHHHHHH
Confidence 78888888765432 36789999996653 2477999999999998543222121 11111
Q ss_pred cc----c--------cccceEeecCCCchH------------HHHHHHHcCC-------------------e-EEEEeee
Q 010836 184 GI----C--------ANELHLCGDPAAVPL------------IQQILQVTGD-------------------D-VKVQSYE 219 (499)
Q Consensus 184 ~l----~--------~~~~~~~~~~~~~~~------------~~~l~~~~~~-------------------~-~~~~~~~ 219 (499)
.. . ....++++.+++... +..+...... . ..+..+.
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~ 243 (699)
T 4gl2_A 164 QKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFAIAD 243 (699)
T ss_dssp HHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEEEEEEEC
T ss_pred hhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCceEEEEcc
Confidence 10 0 022344554444331 1222222111 0 0111000
Q ss_pred ec----------------------CCC-----------------------------------------------------
Q 010836 220 RL----------------------SPL----------------------------------------------------- 224 (499)
Q Consensus 220 ~~----------------------~~~----------------------------------------------------- 224 (499)
.. .+.
T Consensus 244 ~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 323 (699)
T 4gl2_A 244 ATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTIRMIDAY 323 (699)
T ss_dssp -----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000
Q ss_pred --------------------------------------------------------Ccccccc-ccccc----cC-CCCE
Q 010836 225 --------------------------------------------------------VPLNVPL-GSFSN----IQ-TGDC 242 (499)
Q Consensus 225 --------------------------------------------------------~~~~~~l-~~l~~----~~-~~~~ 242 (499)
......+ ..+.. .. .+.+
T Consensus 324 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~~~~~~~ 403 (699)
T 4gl2_A 324 THLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRTEESARG 403 (699)
T ss_dssp HHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHSSSCCCE
T ss_pred HHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcCCCCCcE
Confidence 0000011 11111 12 5677
Q ss_pred EEEe-eHHHHHHHHHHHHHc------CCCeEEEEcCC--------CCHHHHHHHHHHhcCCCCCccEEEecchhhccccc
Q 010836 243 IVTF-SRHAIYRLKKAIESR------GKHLCSIVYGS--------LPPETRTRQATRFNDASSEFDVLVASDAIGMGLNL 307 (499)
Q Consensus 243 iv~~-s~~~~~~l~~~L~~~------~~~~v~~~hg~--------l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidi 307 (499)
|||+ +++.++.+++.|++. +. .+..+||+ |++++|.++++.|++ |+.+|||||+++++|||+
T Consensus 404 IVF~~s~~~~~~l~~~L~~~~~l~~~g~-~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~--g~~~VLVaT~~~~~GIDi 480 (699)
T 4gl2_A 404 IIFTKTRQSAYALSQWITENEKFAEVGV-KAHHLIGAGHSSEFKPMTQNEQKEVISKFRT--GKINLLIATTVAEEGLDI 480 (699)
T ss_dssp EEECSCHHHHHHHHHHHHSSCSCC------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC-----CCSEEECSCCTTSCC
T ss_pred EEEECcHHHHHHHHHHHHhCccccccCc-ceEEEECCCCccCCCCCCHHHHHHHHHHHhc--CCCcEEEEccccccCCcc
Confidence 7777 899999999999876 44 89999999 999999999999999 999999999999999999
Q ss_pred c-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC
Q 010836 308 N-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 308 p-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~ 358 (499)
| +++||+++. |.+...|+||+|||||.|. ..++....+
T Consensus 481 p~v~~VI~~d~---------p~s~~~~~Qr~GRArr~g~----~~~l~~~~~ 519 (699)
T 4gl2_A 481 KECNIVIRYGL---------VTNEIAMVQARGRARADES----TYVLVAHSG 519 (699)
T ss_dssp CSCCCCEEESC---------CCCHHHHHHHHTTSCSSSC----EEEEEEESS
T ss_pred ccCCEEEEeCC---------CCCHHHHHHHcCCCCCCCc----eEEEEEeCC
Confidence 7 999999999 7799999999999888763 555444443
No 36
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.97 E-value=4e-32 Score=290.55 Aligned_cols=278 Identities=17% Similarity=0.160 Sum_probs=179.8
Q ss_pred CCCchhc------cchHHH----hcCCceEEEEccCCccHHHHHHHHHH-----cCCCEEEEccHHHHHHHHHHHHHhcC
Q 010836 61 DLTRPHT------WYPLAR----KKVRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLAWEVAKRLNKAN 125 (499)
Q Consensus 61 ~l~~~q~------~~~~~~----~~~~~~vli~apTGsGKT~~~l~~l~-----~~~~~l~l~P~r~La~q~~~~l~~~g 125 (499)
.++++|+ ++|.+. ..++++++++||||||||++|+.+++ .+.+++|++||++||.|+++.+..++
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~~~ 294 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGLP 294 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC
T ss_pred ccCceeeccccccchHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhcCC
Confidence 7888888 555542 12799999999999999999754443 34689999999999999999998765
Q ss_pred CceeEeeCCee-cccCCCceEEEceeec-------cccCCccEEEEecCcccCCCCCChhHHHHHhccc-cccceEeecC
Q 010836 126 VSCDLITGQER-EEVDGAKHRAVTVEMA-------DVVSDYDCAVIDEIQMLGCKTRGFSFTRALLGIC-ANELHLCGDP 196 (499)
Q Consensus 126 ~~~~~~~g~~~-~~~~~~~~iv~T~e~~-------~~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~-~~~~~~~~~~ 196 (499)
+. ...+... ....+.-+-.++...+ ..+.+++++||||||++... .......+.... ....+++..+
T Consensus 295 i~--~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~--~~~~~~~l~~~~~~~~~~vl~~S 370 (673)
T 2wv9_A 295 VR--YLTPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPA--SIAARGYIATRVEAGEAAAIFMT 370 (673)
T ss_dssp CE--ECCC---CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHH--HHHHHHHHHHHHHTTSCEEEEEC
T ss_pred ee--eecccccccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCcc--HHHHHHHHHHhccccCCcEEEEc
Confidence 43 2222211 1111112223332222 13688999999999998210 001111122221 2445666666
Q ss_pred CCch-HHHHHHHHcCCeEEEEeeeecCCCCccccccccccccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCC
Q 010836 197 AAVP-LIQQILQVTGDDVKVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLP 274 (499)
Q Consensus 197 ~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~ 274 (499)
++.+ .+..+. .....+.......+.......+..+.+ ..++++||+ ++++++.+++.|++.+. .+..+||+
T Consensus 371 AT~~~~i~~~~---~~~~~i~~v~~~~~~~~~~~~l~~l~~-~~~~~lVF~~s~~~~e~la~~L~~~g~-~v~~lHg~-- 443 (673)
T 2wv9_A 371 ATPPGTSDPFP---DTNSPVHDVSSEIPDRAWSSGFEWITD-YAGKTVWFVASVKMSNEIAQCLQRAGK-RVIQLNRK-- 443 (673)
T ss_dssp SSCTTCCCSSC---CCSSCEEEEECCCCSSCCSSCCHHHHS-CCSCEEEECSSHHHHHHHHHHHHTTTC-CEEEECSS--
T ss_pred CCCChhhhhhc---ccCCceEEEeeecCHHHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHHhCCC-eEEEeChH--
Confidence 6543 111111 111112222111121222222233333 466778877 89999999999998865 89999994
Q ss_pred HHHHHHHHHHhcCCCCCccEEEecchhhccccccccEEEEccccc-----ccCc------cccccChhhHHhhhccCCCC
Q 010836 275 PETRTRQATRFNDASSEFDVLVASDAIGMGLNLNISRIIFSTMKK-----FDGV------ELRDLTVPEVKQIAGRAGRY 343 (499)
Q Consensus 275 ~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidipv~~VI~~~~~~-----~~~~------~~~p~s~~~~~Qr~GRagR~ 343 (499)
+|.++++.|++ |+.+|||||+++++|||+|+++||+++... ||.. ...|.+.++|+||+||+||.
T Consensus 444 --eR~~v~~~F~~--g~~~VLVaTdv~e~GIDipv~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~ 519 (673)
T 2wv9_A 444 --SYDTEYPKCKN--GDWDFVITTDISEMGANFGASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRN 519 (673)
T ss_dssp --SHHHHGGGGGT--CCCSEEEECGGGGTTCCCCCSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCC
T ss_pred --HHHHHHHHHHC--CCceEEEECchhhcceeeCCcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCC
Confidence 78899999999 999999999999999999999999866322 2221 23488999999999999999
Q ss_pred -CCCCCcEEEEEEc
Q 010836 344 -GSKFPVGEVTCLD 356 (499)
Q Consensus 344 -g~~~~~g~~~~~~ 356 (499)
|.. |.|+++.
T Consensus 520 ~g~~---G~ai~l~ 530 (673)
T 2wv9_A 520 PSQI---GDEYHYG 530 (673)
T ss_dssp SSCC---CEEEEEC
T ss_pred CCCC---CEEEEEE
Confidence 555 8888774
No 37
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.97 E-value=2.8e-32 Score=281.82 Aligned_cols=265 Identities=17% Similarity=0.187 Sum_probs=169.4
Q ss_pred cCCceEEEEccCCccHHHHHHHHHH-----cCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeec-ccCCCceEEEc
Q 010836 75 KVRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQERE-EVDGAKHRAVT 148 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l~~l~-----~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~-~~~~~~~iv~T 148 (499)
.++++++++||||||||++++.+++ .+.++||++|||+||.|+++++. |..+....+.... ...+..+.++|
T Consensus 19 ~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~--g~~v~~~~~~~~~~~t~~~~i~~~~ 96 (459)
T 2z83_A 19 RKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR--GLPVRYQTSAVQREHQGNEIVDVMC 96 (459)
T ss_dssp STTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT--TSCEEECC--------CCCSEEEEE
T ss_pred hcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc--CceEeEEecccccCCCCCcEEEEEc
Confidence 5689999999999999999755443 45789999999999999999997 4444443333221 11233445666
Q ss_pred eeec-------cccCCccEEEEecCcccCCC---CCChhHHHHHhccccccceEeecCCCchHHHHHHHHcCCeEEEEee
Q 010836 149 VEMA-------DVVSDYDCAVIDEIQMLGCK---TRGFSFTRALLGICANELHLCGDPAAVPLIQQILQVTGDDVKVQSY 218 (499)
Q Consensus 149 ~e~~-------~~l~~~~~iViDEah~~~~~---~~g~~~~~~ll~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 218 (499)
...+ ..+.+++++||||||++... .+|+... +. .....+++..+++.+.. +.........+...
T Consensus 97 ~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~--~~--~~~~~~~il~SAT~~~~--~~~~~~~~~pi~~~ 170 (459)
T 2z83_A 97 HATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIAT--KV--ELGEAAAIFMTATPPGT--TDPFPDSNAPIHDL 170 (459)
T ss_dssp HHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHH--HH--HTTSCEEEEECSSCTTC--CCSSCCCSSCEEEE
T ss_pred hHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHH--Hh--ccCCccEEEEEcCCCcc--hhhhccCCCCeEEe
Confidence 5443 24688999999999985210 1111111 11 12345666666665421 11111111112111
Q ss_pred eecCCCCccccccccccccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEe
Q 010836 219 ERLSPLVPLNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 297 (499)
Q Consensus 219 ~~~~~~~~~~~~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLva 297 (499)
....+.......+..+.+ ..+++|||+ +++.++.+++.|++.+. .+..+||+ +|..+++.|++ |+.+||||
T Consensus 171 ~~~~~~~~~~~~~~~l~~-~~~~~LVF~~s~~~~~~l~~~L~~~g~-~v~~lh~~----~R~~~~~~f~~--g~~~iLVa 242 (459)
T 2z83_A 171 QDEIPDRAWSSGYEWITE-YAGKTVWFVASVKMGNEIAMCLQRAGK-KVIQLNRK----SYDTEYPKCKN--GDWDFVIT 242 (459)
T ss_dssp ECCCCSSCCSSCCHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTC-CEEEESTT----CCCCCGGGSSS--CCCSEEEE
T ss_pred cccCCcchhHHHHHHHHh-cCCCEEEEeCChHHHHHHHHHHHhcCC-cEEecCHH----HHHHHHhhccC--CCceEEEE
Confidence 112221111122222222 356778877 89999999999998876 89999995 56788999999 99999999
Q ss_pred cchhhccccccccEEEEccccc-----ccCc------cccccChhhHHhhhccCCCCCC-CCCcEEEEEEcCC
Q 010836 298 SDAIGMGLNLNISRIIFSTMKK-----FDGV------ELRDLTVPEVKQIAGRAGRYGS-KFPVGEVTCLDSE 358 (499)
Q Consensus 298 T~~~~~Gidipv~~VI~~~~~~-----~~~~------~~~p~s~~~~~Qr~GRagR~g~-~~~~g~~~~~~~~ 358 (499)
|+++++|+|+|.++||+++..+ |++. ...|.|.++|+||+|||||.|. . |.++.+...
T Consensus 243 T~v~~~GiDip~~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g~~~---G~~~~~~~~ 312 (459)
T 2z83_A 243 TDISEMGANFGASRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNPNQV---GDEYHYGGA 312 (459)
T ss_dssp SSCC---CCCSCSEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCTTCC---CEEEEECSC
T ss_pred CChHHhCeecCCCEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCCCCC---CeEEEEEcc
Confidence 9999999999779999965222 1111 1148899999999999999986 4 777666554
No 38
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.97 E-value=4.1e-32 Score=293.92 Aligned_cols=289 Identities=18% Similarity=0.250 Sum_probs=197.0
Q ss_pred HHHHhhhccCCCccccCCCCCchhc-cchHHHhc----CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHH
Q 010836 43 VIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKK----VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLL 113 (499)
Q Consensus 43 ~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~----~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~r~L 113 (499)
+.+..+++.. +| .||+.|+ +++.+... ...+++++||||||||++|+.++. .+.+++|++||++|
T Consensus 356 ~~~~~~~~~l-----pf-~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~L 429 (780)
T 1gm5_A 356 KLAEEFIKSL-----PF-KLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSIL 429 (780)
T ss_dssp HHHHHHHHHS-----SS-CCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHH
T ss_pred HHHHHHHHhC-----CC-CCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHH
Confidence 4555666666 88 8999999 89887542 125899999999999999865543 46799999999999
Q ss_pred HHHHHHHHHhc----CCceeEeeCCeecc----------cCCCceEEEceeecc---ccCCccEEEEecCcccCCCCCCh
Q 010836 114 AWEVAKRLNKA----NVSCDLITGQEREE----------VDGAKHRAVTVEMAD---VVSDYDCAVIDEIQMLGCKTRGF 176 (499)
Q Consensus 114 a~q~~~~l~~~----g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~---~l~~~~~iViDEah~~~~~~~g~ 176 (499)
|.|+++++.++ |+++..++|+.... ....+++|+|++.+. .+.+++++||||+|++...++.
T Consensus 430 a~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDEaHr~g~~qr~- 508 (780)
T 1gm5_A 430 AIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVKQRE- 508 (780)
T ss_dssp HHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCCC-----C-
T ss_pred HHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEecccchhhHHHHH-
Confidence 99999998854 78999999975432 124789999997763 4688999999999998654222
Q ss_pred hHHHHHhccccccceEeecCCCc-hHHHHHHHHcCC-eEEEEeeeec--CCCC-------cccccccccc-cc-CCCCEE
Q 010836 177 SFTRALLGICANELHLCGDPAAV-PLIQQILQVTGD-DVKVQSYERL--SPLV-------PLNVPLGSFS-NI-QTGDCI 243 (499)
Q Consensus 177 ~~~~~ll~l~~~~~~~~~~~~~~-~~~~~l~~~~~~-~~~~~~~~~~--~~~~-------~~~~~l~~l~-~~-~~~~~i 243 (499)
.+... ....+++..+++. +..... ...++ ...+...... .+.. .....+..+. .. ..++++
T Consensus 509 ----~l~~~-~~~~~vL~mSATp~p~tl~~-~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~~~~l~~~i~~~l~~g~qvl 582 (780)
T 1gm5_A 509 ----ALMNK-GKMVDTLVMSATPIPRSMAL-AFYGDLDVTVIDEMPPGRKEVQTMLVPMDRVNEVYEFVRQEVMRGGQAF 582 (780)
T ss_dssp ----CCCSS-SSCCCEEEEESSCCCHHHHH-HHTCCSSCEEECCCCSSCCCCEECCCCSSTHHHHHHHHHHHTTTSCCBC
T ss_pred ----HHHHh-CCCCCEEEEeCCCCHHHHHH-HHhCCcceeeeeccCCCCcceEEEEeccchHHHHHHHHHHHHhcCCcEE
Confidence 11111 1234445555443 222111 22222 1111110000 0100 0001111111 11 234455
Q ss_pred EEe-eH--------HHHHHHHHHHHH-c-CCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccE
Q 010836 244 VTF-SR--------HAIYRLKKAIES-R-GKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISR 311 (499)
Q Consensus 244 v~~-s~--------~~~~~l~~~L~~-~-~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~ 311 (499)
+|+ +. ..++++++.|.+ . ....+..+||+|++++|..+++.|++ |+.+|||||+++++|+|+| +++
T Consensus 583 Vf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~--G~~~ILVaT~vie~GIDiP~v~~ 660 (780)
T 1gm5_A 583 IVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAE--GRYDILVSTTVIEVGIDVPRANV 660 (780)
T ss_dssp CBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTT--TSSSBCCCSSCCCSCSCCTTCCE
T ss_pred EEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHC--CCCeEEEECCCCCccccCCCCCE
Confidence 555 22 457788888876 3 23479999999999999999999999 9999999999999999997 999
Q ss_pred EEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcC
Q 010836 312 IIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (499)
Q Consensus 312 VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~ 357 (499)
||+++.++ .+.+.+.||+||+||.|.. |.|+.++.
T Consensus 661 VIi~d~~r--------~~l~~l~Qr~GRaGR~g~~---g~~ill~~ 695 (780)
T 1gm5_A 661 MVIENPER--------FGLAQLHQLRGRVGRGGQE---AYCFLVVG 695 (780)
T ss_dssp EEBCSCSS--------SCTTHHHHHHHTSCCSSTT---CEEECCCC
T ss_pred EEEeCCCC--------CCHHHHHHHhcccCcCCCC---CEEEEEEC
Confidence 99998843 2678899999999999987 99988876
No 39
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.97 E-value=1.6e-31 Score=294.81 Aligned_cols=283 Identities=16% Similarity=0.145 Sum_probs=160.5
Q ss_pred ccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----c-----CCCEEEEccHHHHHHHHHHHHHhc--
Q 010836 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S-----SSSGIYCGPLRLLAWEVAKRLNKA-- 124 (499)
Q Consensus 57 ~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~----~-----~~~~l~l~P~r~La~q~~~~l~~~-- 124 (499)
+|+..|+++|. +++.+ ++++++++++|||||||++++.++. . ++++||++|+++|+.|+++.++++
T Consensus 244 ~g~~~l~~~Q~~~i~~~--l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~ 321 (797)
T 4a2q_A 244 YETKKARSYQIELAQPA--INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 321 (797)
T ss_dssp ----CCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred cCCCCCCHHHHHHHHHH--HhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhcc
Confidence 46889999999 99988 5689999999999999999865543 2 578899999999999999999865
Q ss_pred --CCceeEeeCCeeccc------CCCceEEEceeecc---------ccCCccEEEEecCcccCCCCCChhHHHHHhcc--
Q 010836 125 --NVSCDLITGQEREEV------DGAKHRAVTVEMAD---------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI-- 185 (499)
Q Consensus 125 --g~~~~~~~g~~~~~~------~~~~~iv~T~e~~~---------~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l-- 185 (499)
++++..++|+..... .+.+++|+||+.+. .+.+++++||||||++... +. +...+..+
T Consensus 322 ~~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~--~~-~~~i~~~~~~ 398 (797)
T 4a2q_A 322 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN--HP-YNVLMTRYLE 398 (797)
T ss_dssp GGTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTT--SH-HHHHHHHHHH
T ss_pred cCCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCC--cc-HHHHHHHHHH
Confidence 899999999764432 36789999996652 4567899999999999864 32 22222111
Q ss_pred -----ccccceEeecCCCc------------hHHHHHHHHcCCeEE--------------------EEeeee-c-CC---
Q 010836 186 -----CANELHLCGDPAAV------------PLIQQILQVTGDDVK--------------------VQSYER-L-SP--- 223 (499)
Q Consensus 186 -----~~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~--------------------~~~~~~-~-~~--- 223 (499)
.....++++.+++. ..+..+....+.... ...+.. . .+
T Consensus 399 ~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 478 (797)
T 4a2q_A 399 QKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAA 478 (797)
T ss_dssp HHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCCHHHH
T ss_pred HhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCcHHHH
Confidence 12334555655554 233333332221110 000000 0 00
Q ss_pred ------------------------C---Cc--------------------------------------------------
Q 010836 224 ------------------------L---VP-------------------------------------------------- 226 (499)
Q Consensus 224 ------------------------~---~~-------------------------------------------------- 226 (499)
. ..
T Consensus 479 ~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 558 (797)
T 4a2q_A 479 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALII 558 (797)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 0 00
Q ss_pred ----------------------------------------------------cccc---c-cccc----ccCCCCEEEEe
Q 010836 227 ----------------------------------------------------LNVP---L-GSFS----NIQTGDCIVTF 246 (499)
Q Consensus 227 ----------------------------------------------------~~~~---l-~~l~----~~~~~~~iv~~ 246 (499)
.... + ..+. ......+|||+
T Consensus 559 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kvLIF~ 638 (797)
T 4a2q_A 559 SEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFA 638 (797)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCEEEEE
T ss_pred hccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeEEEEE
Confidence 0000 0 0011 12346677777
Q ss_pred -eHHHHHHHHHHHHHcC-----------CCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEE
Q 010836 247 -SRHAIYRLKKAIESRG-----------KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRII 313 (499)
Q Consensus 247 -s~~~~~~l~~~L~~~~-----------~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI 313 (499)
+++.++.+++.|++.. +.....+||++++++|..+++.|++ +|+.+|||||+++++|||+| +++||
T Consensus 639 ~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~-~g~~~vLVaT~~~~~GIDlp~v~~VI 717 (797)
T 4a2q_A 639 KTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT-SKDNRLLIATSVADEGIDIVQCNLVV 717 (797)
T ss_dssp SSHHHHHHHHHHHHTCSTTCSCCCEEC-----------------------------CCSEEEEECC-------CCCSEEE
T ss_pred CcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhc-cCCceEEEEcCchhcCCCchhCCEEE
Confidence 8999999999998741 2256777999999999999999996 36789999999999999997 99999
Q ss_pred EcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 314 ~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
+++. |.+...|+||+|| ||... |.|+.+....
T Consensus 718 ~yd~---------p~s~~~~iQr~GR-GR~~~----g~~i~l~~~~ 749 (797)
T 4a2q_A 718 LYEY---------SGNVTKMIQVRGR-GRAAG----SKCILVTSKT 749 (797)
T ss_dssp EESC---------CSCHHHHHTC--------C----CCEEEEECCH
T ss_pred EeCC---------CCCHHHHHHhcCC-CCCCC----ceEEEEEeCC
Confidence 9999 7799999999999 99944 7888887654
No 40
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=4.6e-31 Score=274.51 Aligned_cols=279 Identities=21% Similarity=0.192 Sum_probs=194.3
Q ss_pred CCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-----cCCCEEEEccHHHHHHHHHHHHHhc-CC---cee
Q 010836 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLAWEVAKRLNKA-NV---SCD 129 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~-----~~~~~l~l~P~r~La~q~~~~l~~~-g~---~~~ 129 (499)
..|++.|. +++.+. ++ ++++.+|||+|||++++..+. .++++||++|+++|+.|+++++.++ +. .+.
T Consensus 8 ~~l~~~Q~~~i~~~~--~~-~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~v~ 84 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCK--ET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEKIV 84 (494)
T ss_dssp HCCCHHHHHHHHHGG--GS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGGEE
T ss_pred CCccHHHHHHHHHHh--hC-CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhheE
Confidence 46899999 888874 35 999999999999999865543 3678999999999999999999875 55 788
Q ss_pred EeeCCeecc-----cCCCceEEEceeecc--------ccCCccEEEEecCcccCCCCCChhH-HHHHhccccccceEeec
Q 010836 130 LITGQEREE-----VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTRGFSF-TRALLGICANELHLCGD 195 (499)
Q Consensus 130 ~~~g~~~~~-----~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~~g~~~-~~~ll~l~~~~~~~~~~ 195 (499)
.++|+.... ..+.+++++|++.+. .+.+++++|+||||++.+.. .+.. ...+... ....++++.
T Consensus 85 ~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~-~~~~~~~~~~~~-~~~~~~l~l 162 (494)
T 1wp9_A 85 ALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNY-AYVFIAREYKRQ-AKNPLVIGL 162 (494)
T ss_dssp EECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTC-HHHHHHHHHHHH-CSSCCEEEE
T ss_pred EeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCC-cHHHHHHHHHhc-CCCCeEEEE
Confidence 888865432 225789999997653 25789999999999997531 2221 1222211 222333443
Q ss_pred CCCc----hHHHHHHHHcCCeEEEE--------------------eeeecC-----------------------------
Q 010836 196 PAAV----PLIQQILQVTGDDVKVQ--------------------SYERLS----------------------------- 222 (499)
Q Consensus 196 ~~~~----~~~~~l~~~~~~~~~~~--------------------~~~~~~----------------------------- 222 (499)
+++. ..+..++...+...... ......
T Consensus 163 TaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (494)
T 1wp9_A 163 TASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESS 242 (494)
T ss_dssp ESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHTSSSCC
T ss_pred ecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 3332 23344444433211000 000000
Q ss_pred --------------------------------------------------------------------------------
Q 010836 223 -------------------------------------------------------------------------------- 222 (499)
Q Consensus 223 -------------------------------------------------------------------------------- 222 (499)
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 322 (494)
T 1wp9_A 243 SPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSD 322 (494)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHHHHHHHTS
T ss_pred CCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchhhhhhhhh
Confidence
Q ss_pred -----------------CCCcccccc-ccccc----cCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcC--------
Q 010836 223 -----------------PLVPLNVPL-GSFSN----IQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYG-------- 271 (499)
Q Consensus 223 -----------------~~~~~~~~l-~~l~~----~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg-------- 271 (499)
....+...+ ..+.+ ...+.+|||+ +++.++.+++.|.+.+. .+..+||
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~-~~~~~~g~~~~~~~~ 401 (494)
T 1wp9_A 323 KRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGI-KAKRFVGQASKENDR 401 (494)
T ss_dssp HHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTC-CEEEECCSSCC----
T ss_pred HHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCC-CcEEEeccccccccc
Confidence 000000000 11111 2456677777 89999999999998866 8999999
Q ss_pred CCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcE
Q 010836 272 SLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVG 350 (499)
Q Consensus 272 ~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g 350 (499)
+++.++|.++++.|++ |+.+|||||+++++|+|+| +++||+++. |.+...|.||+||+||.|+ |
T Consensus 402 ~~~~~~r~~~~~~F~~--~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~---------~~~~~~~~Qr~GR~~R~g~----g 466 (494)
T 1wp9_A 402 GLSQREQKLILDEFAR--GEFNVLVATSVGEEGLDVPEVDLVVFYEP---------VPSAIRSIQRRGRTGRHMP----G 466 (494)
T ss_dssp ---CCHHHHHHHHHHH--TSCSEEEECGGGGGGGGSTTCCEEEESSC---------CHHHHHHHHHHTTSCSCCC----S
T ss_pred cCCHHHHHHHHHHHhc--CCceEEEECCccccCCCchhCCEEEEeCC---------CCCHHHHHHHHhhccCCCC----c
Confidence 9999999999999999 9999999999999999997 999999998 7799999999999999997 6
Q ss_pred EEEEEcCCC
Q 010836 351 EVTCLDSED 359 (499)
Q Consensus 351 ~~~~~~~~~ 359 (499)
.++.+..++
T Consensus 467 ~~~~l~~~~ 475 (494)
T 1wp9_A 467 RVIILMAKG 475 (494)
T ss_dssp EEEEEEETT
T ss_pred eEEEEEecC
Confidence 776665544
No 41
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.97 E-value=1.2e-31 Score=275.56 Aligned_cols=263 Identities=17% Similarity=0.151 Sum_probs=161.3
Q ss_pred cCCceEEEEccCCccHHHHHHHHHH-----cCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeeccc-CCCceEEEc
Q 010836 75 KVRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEV-DGAKHRAVT 148 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l~~l~-----~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~-~~~~~iv~T 148 (499)
+++++++++||||||||++|+.++. .+.+++|++||++||.|+++.+..++ +...++...... .+.-+-.++
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~~--v~~~~~~~~~v~Tp~~l~~~l~ 83 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLD--VKFHTQAFSAHGSGREVIDAMC 83 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTSC--EEEESSCCCCCCCSSCCEEEEE
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcCC--eEEecccceeccCCccceeeec
Confidence 5699999999999999999854443 34589999999999999999998654 333222211110 011111111
Q ss_pred eeec-----c--ccCCccEEEEecCcccCCCCCChhHH-HHHhcc-ccccceEeecCCCch-HHHHHHHHcCCeEEEEee
Q 010836 149 VEMA-----D--VVSDYDCAVIDEIQMLGCKTRGFSFT-RALLGI-CANELHLCGDPAAVP-LIQQILQVTGDDVKVQSY 218 (499)
Q Consensus 149 ~e~~-----~--~l~~~~~iViDEah~~~~~~~g~~~~-~~ll~l-~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~ 218 (499)
...+ . .+.+++++||||+|++ +. ++... ..+..+ .....+++..+++.+ ....+....+ .... .
T Consensus 84 ~~~l~~~~~~~~~~~~l~~vViDEah~~-~~--~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~~~~-~~~~--~ 157 (440)
T 1yks_A 84 HATLTYRMLEPTRVVNWEVIIMDEAHFL-DP--ASIAARGWAAHRARANESATILMTATPPGTSDEFPHSNG-EIED--V 157 (440)
T ss_dssp HHHHHHHHTSSSCCCCCSEEEETTTTCC-SH--HHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCCSS-CEEE--E
T ss_pred ccchhHhhhCcccccCccEEEEECcccc-Cc--chHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhhcCC-CeeE--e
Confidence 1111 1 2588999999999998 21 22111 111111 123456666665542 2222222111 1111 1
Q ss_pred eecCCCCccccccccccccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEe
Q 010836 219 ERLSPLVPLNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA 297 (499)
Q Consensus 219 ~~~~~~~~~~~~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLva 297 (499)
....+.......+..+.+ ..++++||+ +++.++.+++.|++.+. .+..+|| ++|.++++.|++ |+.+||||
T Consensus 158 ~~~~~~~~~~~~~~~l~~-~~~~~lVF~~s~~~a~~l~~~L~~~~~-~v~~lhg----~~R~~~~~~F~~--g~~~vLVa 229 (440)
T 1yks_A 158 QTDIPSEPWNTGHDWILA-DKRPTAWFLPSIRAANVMAASLRKAGK-SVVVLNR----KTFEREYPTIKQ--KKPDFILA 229 (440)
T ss_dssp ECCCCSSCCSSSCHHHHH-CCSCEEEECSCHHHHHHHHHHHHHTTC-CEEECCS----SSCC----------CCCSEEEE
T ss_pred eeccChHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHHHcCC-CEEEecc----hhHHHHHhhhcC--CCceEEEE
Confidence 111121112222222332 356777777 89999999999998865 8999999 457789999999 99999999
Q ss_pred cchhhccccccccEEEEccccc-----ccCc-----cccccChhhHHhhhccCCCC-CCCCCcEEEEEEc
Q 010836 298 SDAIGMGLNLNISRIIFSTMKK-----FDGV-----ELRDLTVPEVKQIAGRAGRY-GSKFPVGEVTCLD 356 (499)
Q Consensus 298 T~~~~~Gidipv~~VI~~~~~~-----~~~~-----~~~p~s~~~~~Qr~GRagR~-g~~~~~g~~~~~~ 356 (499)
|+++++|+|+|+++||+++..+ ++.. ...|.+.++|+||+||+||. |.. |.|+.++
T Consensus 230 T~v~e~GiDipv~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~---g~~~~l~ 296 (440)
T 1yks_A 230 TDIAEMGANLCVERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRD---GDSYYYS 296 (440)
T ss_dssp SSSTTCCTTCCCSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCC---CEEEEEC
T ss_pred CChhheeeccCceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCC---ceEEEEe
Confidence 9999999999999999854432 1111 12378999999999999997 455 8888885
No 42
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.97 E-value=3.4e-31 Score=271.52 Aligned_cols=265 Identities=16% Similarity=0.141 Sum_probs=169.3
Q ss_pred CCceEEEEccCCccHHHHHHHHHH-----cCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecc-cCCCceEEEce
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE-VDGAKHRAVTV 149 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~-----~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~-~~~~~~iv~T~ 149 (499)
++++++++||||||||++|+.++. .+.+++|++||++||.|+++.+. |..+.+.+|..... ..+..+.++|.
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~ 78 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR--GEPIRYMTPAVQSERTGNEIVDFMCH 78 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT--TSCEEEC---------CCCSEEEEEH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC--CCeEEEEecCccccCCCCceEEEEch
Confidence 378999999999999999844333 45689999999999999999886 56777777653322 22344445555
Q ss_pred eecc-------ccCCccEEEEecCcccCCCCCChhHHHHHhcc-ccccceEeecCCCchHHHHHHHHcCCeEEEEeeeec
Q 010836 150 EMAD-------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI-CANELHLCGDPAAVPLIQQILQVTGDDVKVQSYERL 221 (499)
Q Consensus 150 e~~~-------~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 221 (499)
..+. .+.+++++||||+|++... .......+..+ .....+++..+++.+.. +.........+......
T Consensus 79 ~~l~~~l~~~~~~~~l~~vViDEaH~~~~~--~~~~~~~l~~~~~~~~~~~l~~SAT~~~~--~~~~~~~~~~i~~~~~~ 154 (431)
T 2v6i_A 79 STFTMKLLQGVRVPNYNLYIMDEAHFLDPA--SVAARGYIETRVSMGDAGAIFMTATPPGT--TEAFPPSNSPIIDEETR 154 (431)
T ss_dssp HHHHHHHHHTCCCCCCSEEEEESTTCCSHH--HHHHHHHHHHHHHTTSCEEEEEESSCTTC--CCSSCCCSSCCEEEECC
T ss_pred HHHHHHHhcCccccCCCEEEEeCCccCCcc--HHHHHHHHHHHhhCCCCcEEEEeCCCCcc--hhhhcCCCCceeecccc
Confidence 3321 2688999999999997311 11122222222 12345666666554321 11111111111111111
Q ss_pred CCCCccccccccccccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecch
Q 010836 222 SPLVPLNVPLGSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA 300 (499)
Q Consensus 222 ~~~~~~~~~l~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~ 300 (499)
.+.......+..+.+ ..++++||+ ++++++.+++.|++.+. .+..+||+ +|.++++.|++ |+.+|||||++
T Consensus 155 ~~~~~~~~~~~~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~~~-~v~~lhg~----~r~~~~~~f~~--g~~~vLVaT~v 226 (431)
T 2v6i_A 155 IPDKAWNSGYEWITE-FDGRTVWFVHSIKQGAEIGTCLQKAGK-KVLYLNRK----TFESEYPKCKS--EKWDFVITTDI 226 (431)
T ss_dssp CCSSCCSSCCHHHHS-CSSCEEEECSSHHHHHHHHHHHHHTTC-CEEEESTT----THHHHTTHHHH--SCCSEEEECGG
T ss_pred CCHHHHHHHHHHHHc-CCCCEEEEeCCHHHHHHHHHHHHHcCC-eEEEeCCc----cHHHHHHhhcC--CCCeEEEECch
Confidence 111111222222322 356777777 89999999999998865 89999997 57789999999 99999999999
Q ss_pred hhccccccccEEEEcccccc---c-----CccccccChhhHHhhhccCCCCCCCCCcEEEEEEc
Q 010836 301 IGMGLNLNISRIIFSTMKKF---D-----GVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLD 356 (499)
Q Consensus 301 ~~~Gidipv~~VI~~~~~~~---~-----~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~ 356 (499)
+++|+|+|+++||+++..+. | -....|.+.++|+||+||+||.|.. .|.++.+.
T Consensus 227 ~e~GiDip~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~--~~~~~~~~ 288 (431)
T 2v6i_A 227 SEMGANFKADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNPEK--LGDIYAYS 288 (431)
T ss_dssp GGTSCCCCCSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCTTC--CCCEEEEC
T ss_pred HHcCcccCCcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCCCC--CCeEEEEc
Confidence 99999999888776544331 1 0112478999999999999999853 14444443
No 43
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.97 E-value=2e-31 Score=277.42 Aligned_cols=271 Identities=18% Similarity=0.124 Sum_probs=193.6
Q ss_pred CCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-CCCEEEEccHHHHHHHHHHHHHhcCCc-eeEeeCCeec
Q 010836 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVS-CDLITGQERE 137 (499)
Q Consensus 61 ~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~-~~~~l~l~P~r~La~q~~~~l~~~g~~-~~~~~g~~~~ 137 (499)
.|++.|. +++.+ ++++++++++|||+|||++++..+.. +++++|++|+++|+.|+++++.++|++ ++.++|+...
T Consensus 93 ~l~~~Q~~ai~~i--~~~~~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~~~~~v~~~~g~~~~ 170 (472)
T 2fwr_A 93 SLRDYQEKALERW--LVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIKE 170 (472)
T ss_dssp CBCHHHHHHHHHH--TTTTEEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGGCGGGEEEBSSSCBC
T ss_pred CcCHHHHHHHHHH--HhcCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhCCCcceEEECCCcCC
Confidence 6899999 99887 55788999999999999999776654 578999999999999999999999999 9999887654
Q ss_pred ccCCCceEEEceeeccc-----cCCccEEEEecCcccCCCCCChhHHHHHhccccccceEeecCCCch------------
Q 010836 138 EVDGAKHRAVTVEMADV-----VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVP------------ 200 (499)
Q Consensus 138 ~~~~~~~iv~T~e~~~~-----l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~~------------ 200 (499)
..+++++|++.+.. ..++++|||||||++.+. ++. ..+..+.+. .+++.+++..
T Consensus 171 ---~~~Ivv~T~~~l~~~~~~~~~~~~liIvDEaH~~~~~--~~~--~~~~~~~~~--~~l~lSATp~~~~~~~~~l~~~ 241 (472)
T 2fwr_A 171 ---LKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAE--SYV--QIAQMSIAP--FRLGLTATFEREDGRHEILKEV 241 (472)
T ss_dssp ---CCSEEEEEHHHHHHTHHHHTTTCSEEEEETGGGTTST--TTH--HHHHTCCCS--EEEEEESCCCCTTSGGGSHHHH
T ss_pred ---cCCEEEEEcHHHHHHHHHhcCCCCEEEEECCcCCCCh--HHH--HHHHhcCCC--eEEEEecCccCCCCHHHHHHHH
Confidence 46789999966532 266999999999999864 332 222222222 2344333332
Q ss_pred --------HHHHHHHHcCCeEEEEeee-ecCC---------------------------CCcc-----------------
Q 010836 201 --------LIQQILQVTGDDVKVQSYE-RLSP---------------------------LVPL----------------- 227 (499)
Q Consensus 201 --------~~~~l~~~~~~~~~~~~~~-~~~~---------------------------~~~~----------------- 227 (499)
...++.............. ...+ ....
T Consensus 242 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (472)
T 2fwr_A 242 VGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDERAYEALR 321 (472)
T ss_dssp TCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSSTTTTTTTCCSSSSSTTTH
T ss_pred hCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHhccCHHHHHHHH
Confidence 1122211101111111000 0000 0000
Q ss_pred ---------------cccc-ccccccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCC
Q 010836 228 ---------------NVPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASS 290 (499)
Q Consensus 228 ---------------~~~l-~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g 290 (499)
...+ ..+.....++++||+ +++.++.+++.| .+..+||+++..+|.++++.|++ |
T Consensus 322 ~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l------~~~~~~g~~~~~~R~~~~~~F~~--g 393 (472)
T 2fwr_A 322 AWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVF------LIPAITHRTSREEREEILEGFRT--G 393 (472)
T ss_dssp HHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHT------TCCBCCSSSCSHHHHTHHHHHHH--S
T ss_pred HHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHh------CcceeeCCCCHHHHHHHHHHHhC--C
Confidence 0000 111222355677776 899999999887 36679999999999999999999 9
Q ss_pred CccEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 291 EFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 291 ~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
+.+|||||+++++|+|+| ++.||+++. |.+...|.||+||+||.|+++....+|.+..++
T Consensus 394 ~~~vLv~T~~~~~Gldlp~~~~Vi~~~~---------~~s~~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 394 RFRAIVSSQVLDEGIDVPDANVGVIMSG---------SGSAREYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp SCSBCBCSSCCCSSSCSCCBSEEEEECC---------SSCCHHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred CCCEEEEcCchhcCcccccCcEEEEECC---------CCCHHHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 999999999999999998 999999988 779999999999999999643567777776654
No 44
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.97 E-value=1.5e-30 Score=292.69 Aligned_cols=244 Identities=15% Similarity=0.148 Sum_probs=165.2
Q ss_pred ccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhc----CC-
Q 010836 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKA----NV- 126 (499)
Q Consensus 57 ~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~r~La~q~~~~l~~~----g~- 126 (499)
+||. + ++|+ ++|.+ +++++++++||||||||+.++..+. .+++++|++||++||.|++++++++ ++
T Consensus 54 ~g~~-p-~iQ~~ai~~i--l~g~dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~ 129 (1054)
T 1gku_B 54 VGEP-R-AIQKMWAKRI--LRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVG 129 (1054)
T ss_dssp TCSC-C-HHHHHHHHHH--HTTCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCS
T ss_pred cCCC-H-HHHHHHHHHH--HhCCCEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCC
Confidence 4999 9 9999 99998 5699999999999999984333332 3578999999999999999999854 56
Q ss_pred ---ceeEeeCCeeccc--------CCCceEEEceeec----cccCCccEEEEecCcccCCCCCChhHHHHH--hccc---
Q 010836 127 ---SCDLITGQEREEV--------DGAKHRAVTVEMA----DVVSDYDCAVIDEIQMLGCKTRGFSFTRAL--LGIC--- 186 (499)
Q Consensus 127 ---~~~~~~g~~~~~~--------~~~~~iv~T~e~~----~~l~~~~~iViDEah~~~~~~~g~~~~~~l--l~l~--- 186 (499)
.+..++|+..... .+.+++|+||+.+ ..+.+++++||||||++.+ +|..+...+ +++.
T Consensus 130 ~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~L~~l~~lViDEah~~l~--~~~~~~~i~~~lgf~~~~ 207 (1054)
T 1gku_B 130 TENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILK--ASKNVDKLLHLLGFHYDL 207 (1054)
T ss_dssp GGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTTSCCCSEEEESCHHHHHT--STHHHHHHHHHTTEEEET
T ss_pred ccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHHhccCCEEEEeChhhhhh--ccccHHHHHHHhCcchhh
Confidence 7788888653321 2378999999554 2256889999999999986 577665554 3321
Q ss_pred -------cccceEeecCCCch--HHHHHHHHc-C-----CeE---EEEeeeecCCCCccccccccccccCCCCEEEEe-e
Q 010836 187 -------ANELHLCGDPAAVP--LIQQILQVT-G-----DDV---KVQSYERLSPLVPLNVPLGSFSNIQTGDCIVTF-S 247 (499)
Q Consensus 187 -------~~~~~~~~~~~~~~--~~~~l~~~~-~-----~~~---~~~~~~~~~~~~~~~~~l~~l~~~~~~~~iv~~-s 247 (499)
.....++.++.+.+ ....+.... . ... .+..... . ......+..+.....+++|||+ +
T Consensus 208 ~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~i~v~~~~~~~~~i~~~~~--~-~~k~~~L~~ll~~~~~~~LVF~~t 284 (1054)
T 1gku_B 208 KTKSWVGEARGCLMVSTATAKKGKKAELFRQLLNFDIGSSRITVRNVEDVAV--N-DESISTLSSILEKLGTGGIIYART 284 (1054)
T ss_dssp TTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHCCCCSCCEECCCCEEEEEE--S-CCCTTTTHHHHTTSCSCEEEEESS
T ss_pred hhhhcccCCceEEEEecCCCchhHHHHHhhcceEEEccCcccCcCCceEEEe--c-hhHHHHHHHHHhhcCCCEEEEEcC
Confidence 12234444443332 111222211 0 000 0111111 1 1112222222222256677777 8
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEe----cchhhcccccc-c-cEEEEcccc
Q 010836 248 RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVA----SDAIGMGLNLN-I-SRIIFSTMK 318 (499)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLva----T~~~~~Gidip-v-~~VI~~~~~ 318 (499)
++.++.+++.|++. ..+..+||++. .+++.|++ |+.+|||| |+++++|||+| | ++||+++.+
T Consensus 285 ~~~a~~l~~~L~~~--~~v~~lhg~~~-----~~l~~F~~--G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 285 GEEAEEIYESLKNK--FRIGIVTATKK-----GDYEKFVE--GEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp HHHHHHHHHTTTTS--SCEEECTTSSS-----HHHHHHHH--TSCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred HHHHHHHHHHHhhc--cCeeEEeccHH-----HHHHHHHc--CCCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 99999999999887 58999999984 67889999 99999999 99999999997 6 999999997
No 45
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.97 E-value=4.2e-31 Score=297.06 Aligned_cols=246 Identities=15% Similarity=0.119 Sum_probs=172.8
Q ss_pred cCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHh---cCCcee
Q 010836 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNK---ANVSCD 129 (499)
Q Consensus 58 ~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~r~La~q~~~~l~~---~g~~~~ 129 (499)
+| .|+++|+ ++|.+ +++++++++||||||||++++.++. .+++++|++||++||.|+++++++ .++++.
T Consensus 76 gf-~pt~iQ~~ai~~i--l~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~ 152 (1104)
T 4ddu_A 76 GK-DLTGYQRLWAKRI--VQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLADEKVKIF 152 (1104)
T ss_dssp SS-CCCHHHHHHHHHH--TTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEE
T ss_pred CC-CCCHHHHHHHHHH--HcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEE
Confidence 66 6999999 99998 6699999999999999998755443 467899999999999999999998 467888
Q ss_pred EeeCCeecc---------c-CCCceEEEceeec-cc-----cCCccEEEEecCcccCCCC---------CChhHH--HHH
Q 010836 130 LITGQEREE---------V-DGAKHRAVTVEMA-DV-----VSDYDCAVIDEIQMLGCKT---------RGFSFT--RAL 182 (499)
Q Consensus 130 ~~~g~~~~~---------~-~~~~~iv~T~e~~-~~-----l~~~~~iViDEah~~~~~~---------~g~~~~--~~l 182 (499)
.++|+.... . ...+++|+||+.+ +. +.+++++||||||++.... +|+... ..+
T Consensus 153 ~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~i 232 (1104)
T 4ddu_A 153 GFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKA 232 (1104)
T ss_dssp EECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHH
Confidence 899876541 1 2378999999766 33 5789999999999887532 344432 233
Q ss_pred hcccc-----------ccceEeecCCC-ch-HHH-HHHHH-cCCeE--------EEEeeeecCCCCcccccc-ccccccC
Q 010836 183 LGICA-----------NELHLCGDPAA-VP-LIQ-QILQV-TGDDV--------KVQSYERLSPLVPLNVPL-GSFSNIQ 238 (499)
Q Consensus 183 l~l~~-----------~~~~~~~~~~~-~~-~~~-~l~~~-~~~~~--------~~~~~~~~~~~~~~~~~l-~~l~~~~ 238 (499)
+...+ ...+++..+++ .+ .+. .+... ..-.. .+....... . ....+ ..+.. .
T Consensus 233 l~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~~~~~~~~i~~~~~~~--~-k~~~L~~ll~~-~ 308 (1104)
T 4ddu_A 233 FSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRLVSVARNITHVRISS--R-SKEKLVELLEI-F 308 (1104)
T ss_dssp HHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCBCCCCCCCEEEEEESC--C-CHHHHHHHHHH-H
T ss_pred HHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEeccCCCCcCCceeEEEec--C-HHHHHHHHHHh-c
Confidence 33222 34455555555 22 111 12211 11000 011110000 1 11111 22222 3
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcCCCeEE-EEcCCCCHHHHHHHHHHhcCCCCCccEEEe----cchhhcccccc--cc
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCS-IVYGSLPPETRTRQATRFNDASSEFDVLVA----SDAIGMGLNLN--IS 310 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~-~~hg~l~~~~R~~~~~~f~~~~g~~~iLva----T~~~~~Gidip--v~ 310 (499)
.+++|||+ +++.++.+++.|.+.+. .+. .+||. |.+ ++.|++ |+.+|||| |+++++|||+| |+
T Consensus 309 ~~~~LVF~~s~~~a~~l~~~L~~~g~-~~~~~lhg~-----rr~-l~~F~~--G~~~VLVatas~TdvlarGIDip~~V~ 379 (1104)
T 4ddu_A 309 RDGILIFAQTEEEGKELYEYLKRFKF-NVGETWSEF-----EKN-FEDFKV--GKINILIGVQAYYGKLTRGVDLPERIK 379 (1104)
T ss_dssp CSSEEEEESSSHHHHHHHHHHHHTTC-CEEESSSSH-----HHH-HHHHHH--TSCSEEEEETTTHHHHCCSCCCTTTCC
T ss_pred CCCEEEEECcHHHHHHHHHHHHhCCC-CeeeEecCc-----HHH-HHHHHC--CCCCEEEEecCCCCeeEecCcCCCCCC
Confidence 46777777 89999999999998876 787 99982 555 999999 99999999 99999999995 79
Q ss_pred EEEEccccc
Q 010836 311 RIIFSTMKK 319 (499)
Q Consensus 311 ~VI~~~~~~ 319 (499)
+||++|+++
T Consensus 380 ~VI~~d~P~ 388 (1104)
T 4ddu_A 380 YVIFWGTPS 388 (1104)
T ss_dssp EEEEESCCE
T ss_pred EEEEECCCC
Confidence 999999987
No 46
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.97 E-value=4e-31 Score=277.74 Aligned_cols=280 Identities=15% Similarity=0.052 Sum_probs=194.7
Q ss_pred CCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc----C-CCEEEEccHHHHHHHHHHHHHhcC----Cce
Q 010836 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES----S-SSGIYCGPLRLLAWEVAKRLNKAN----VSC 128 (499)
Q Consensus 59 ~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~----~-~~~l~l~P~r~La~q~~~~l~~~g----~~~ 128 (499)
...|++.|. +++.+. +++++++++|||||||++++.++.. . ++++|++|+++|+.|+++++.+++ ..+
T Consensus 111 ~~~l~~~Q~~ai~~~~--~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~v 188 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGL--VNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMI 188 (510)
T ss_dssp EECCCHHHHHHHHHHH--HHSEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGGE
T ss_pred CCCCCHHHHHHHHHHH--hcCCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccce
Confidence 448999999 999884 4789999999999999998655532 3 489999999999999999998763 356
Q ss_pred eEeeCCeeccc---CCCceEEEceeecc-----ccCCccEEEEecCcccCCCCCChhHHHHHhccccccceEeecCCCch
Q 010836 129 DLITGQEREEV---DGAKHRAVTVEMAD-----VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVP 200 (499)
Q Consensus 129 ~~~~g~~~~~~---~~~~~iv~T~e~~~-----~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~~ 200 (499)
..++|+..... .+.+++++|++.+. .+.+++++||||||++.. ..+...+..+ .....+++.+++.+
T Consensus 189 ~~~~~~~~~~~~~~~~~~I~i~T~~~l~~~~~~~~~~~~liIiDE~H~~~~----~~~~~il~~~-~~~~~~l~lSATp~ 263 (510)
T 2oca_A 189 KKIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATG----KSISSIISGL-NNCMFKFGLSGSLR 263 (510)
T ss_dssp EECGGGCCTTGGGCTTCSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGCCH----HHHHHHGGGC-TTCCEEEEEESCGG
T ss_pred EEEecCCccccccccCCcEEEEeHHHHhhchhhhhhcCCEEEEECCcCCCc----ccHHHHHHhc-ccCcEEEEEEeCCC
Confidence 67777644332 46789999996552 357899999999999874 2334443334 23334555444442
Q ss_pred HH----HHHHHHcCCeEE-----------------EEeeeecCC---------CCccc------------ccc-cccccc
Q 010836 201 LI----QQILQVTGDDVK-----------------VQSYERLSP---------LVPLN------------VPL-GSFSNI 237 (499)
Q Consensus 201 ~~----~~l~~~~~~~~~-----------------~~~~~~~~~---------~~~~~------------~~l-~~l~~~ 237 (499)
.. ..+....+.... +.......+ ..... ..+ ..+.+.
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 343 (510)
T 2oca_A 264 DGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKL 343 (510)
T ss_dssp GCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHH
Confidence 11 112222222110 000000000 00000 001 111111
Q ss_pred --CCCCE-EEEeeHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEec-chhhcccccc-ccEE
Q 010836 238 --QTGDC-IVTFSRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS-DAIGMGLNLN-ISRI 312 (499)
Q Consensus 238 --~~~~~-iv~~s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT-~~~~~Gidip-v~~V 312 (499)
..+.. ++|++.+.++.+++.|.+.+. ++..+||+++.++|.++++.|++ |+.+||||| +++++|+|+| +++|
T Consensus 344 ~~~~~~~~ivf~~~~~~~~l~~~L~~~~~-~v~~~~g~~~~~~r~~i~~~f~~--g~~~vLv~T~~~~~~GiDip~v~~v 420 (510)
T 2oca_A 344 AQKDENAFVMFKHVSHGKAIFDLIKNEYD-KVYYVSGEVDTETRNIMKTLAEN--GKGIIIVASYGVFSTGISVKNLHHV 420 (510)
T ss_dssp HTTTCEEEEEESSHHHHHHHHHHHHTTCS-SEEEESSSTTHHHHHHHHHHHHH--CCSCEEEEEHHHHHHSCCCCSEEEE
T ss_pred HhcCCCeEEEEecHHHHHHHHHHHHHcCC-CeEEEECCCCHHHHHHHHHHHhC--CCCCEEEEEcChhhcccccccCcEE
Confidence 23444 444488999999999998876 89999999999999999999999 999999999 9999999998 9999
Q ss_pred EEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcC
Q 010836 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (499)
Q Consensus 313 I~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~ 357 (499)
|+++. |.+..+|.||+||+||.|.++....++.+.+
T Consensus 421 i~~~~---------~~s~~~~~Q~~GR~gR~g~~~~~v~i~~~~~ 456 (510)
T 2oca_A 421 VLAHG---------VKSKIIVLQTIGRVLRKHGSKTIATVWDLID 456 (510)
T ss_dssp EESSC---------CCSCCHHHHHHHHHHTTTCCCCCCEEEEEEE
T ss_pred EEeCC---------CCCHHHHHHHHhcccccCCCCceEEEEEeec
Confidence 99988 6699999999999999998632344454443
No 47
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.97 E-value=8.1e-30 Score=288.34 Aligned_cols=283 Identities=16% Similarity=0.182 Sum_probs=197.4
Q ss_pred ccCCCCCchhc-cchHHHhc--CC--ceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHh----
Q 010836 57 FDFTDLTRPHT-WYPLARKK--VR--KVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNK---- 123 (499)
Q Consensus 57 ~~~~~l~~~q~-~~~~~~~~--~~--~~vli~apTGsGKT~~~l~~l----~~~~~~l~l~P~r~La~q~~~~l~~---- 123 (499)
++|. +|+.|. +++.+... ++ .+++++||||||||++++.++ ..+++++|++||++|+.|+++++.+
T Consensus 600 f~~~-~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~ 678 (1151)
T 2eyq_A 600 FPFE-TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFAN 678 (1151)
T ss_dssp CCSC-CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTT
T ss_pred CCCC-CCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhc
Confidence 3665 699999 99987542 23 499999999999999975433 4567899999999999999999985
Q ss_pred cCCceeEeeCCeecc----------cCCCceEEEceeecc---ccCCccEEEEecCcccCCCCCChhHHHHHhccccccc
Q 010836 124 ANVSCDLITGQEREE----------VDGAKHRAVTVEMAD---VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANEL 190 (499)
Q Consensus 124 ~g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~---~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~ 190 (499)
+++.+..++|..... ....+++++|++++. .+.+++++||||+|++ |......+..+.. ..
T Consensus 679 ~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIiDEaH~~-----g~~~~~~l~~l~~-~~ 752 (1151)
T 2eyq_A 679 WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRF-----GVRHKERIKAMRA-NV 752 (1151)
T ss_dssp TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGGS-----CHHHHHHHHHHHT-TS
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEEechHhc-----ChHHHHHHHHhcC-CC
Confidence 357788877643221 124789999997664 3588999999999996 3344444444433 34
Q ss_pred eEeecCCCc-hHHHHHHHHcCCeEEEEeeeecCCCCc-------cccc-cc-ccccc-CCCCEEEEe-eHHHHHHHHHHH
Q 010836 191 HLCGDPAAV-PLIQQILQVTGDDVKVQSYERLSPLVP-------LNVP-LG-SFSNI-QTGDCIVTF-SRHAIYRLKKAI 258 (499)
Q Consensus 191 ~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~-------~~~~-l~-~l~~~-~~~~~iv~~-s~~~~~~l~~~L 258 (499)
++++.+++. +.........-....+........... .... .. .+... ..+++++|+ +++.++.+++.|
T Consensus 753 ~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~~i~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L 832 (1151)
T 2eyq_A 753 DILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSMVVREAILREILRGGQVYYLYNDVENIQKAAERL 832 (1151)
T ss_dssp EEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHHHHHHHHHHHHTTTCEEEEECCCSSCHHHHHHHH
T ss_pred CEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHH
Confidence 455555443 332222211111121111000000000 0000 01 11112 345566666 788999999999
Q ss_pred HHcC-CCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHhh
Q 010836 259 ESRG-KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQI 336 (499)
Q Consensus 259 ~~~~-~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr 336 (499)
++.. ..++..+||+|++.+|.++++.|++ |+.+|||||+++++|+|+| +++||+++.. +.+..+|.||
T Consensus 833 ~~~~p~~~v~~lhg~~~~~eR~~il~~F~~--g~~~VLVaT~v~e~GiDip~v~~VIi~~~~--------~~~l~~l~Qr 902 (1151)
T 2eyq_A 833 AELVPEARIAIGHGQMRERELERVMNDFHH--QRFNVLVCTTIIETGIDIPTANTIIIERAD--------HFGLAQLHQL 902 (1151)
T ss_dssp HHHCTTSCEEECCSSCCHHHHHHHHHHHHT--TSCCEEEESSTTGGGSCCTTEEEEEETTTT--------SSCHHHHHHH
T ss_pred HHhCCCCeEEEEeCCCCHHHHHHHHHHHHc--CCCcEEEECCcceeeecccCCcEEEEeCCC--------CCCHHHHHHH
Confidence 8862 3489999999999999999999999 9999999999999999998 9999988763 2368899999
Q ss_pred hccCCCCCCCCCcEEEEEEcCCC
Q 010836 337 AGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 337 ~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
+||+||.|.. |.|+.+++++
T Consensus 903 ~GRvgR~g~~---g~~~ll~~~~ 922 (1151)
T 2eyq_A 903 RGRVGRSHHQ---AYAWLLTPHP 922 (1151)
T ss_dssp HTTCCBTTBC---EEEEEEECCG
T ss_pred HhccCcCCCc---eEEEEEECCc
Confidence 9999999987 9999887654
No 48
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.97 E-value=1.7e-30 Score=289.76 Aligned_cols=282 Identities=16% Similarity=0.136 Sum_probs=160.1
Q ss_pred cCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc---------CCCEEEEccHHHHHHHHHHHHHhc---
Q 010836 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES---------SSSGIYCGPLRLLAWEVAKRLNKA--- 124 (499)
Q Consensus 58 ~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~---------~~~~l~l~P~r~La~q~~~~l~~~--- 124 (499)
++..|+++|. +++.+ ++++++++.+|||||||++++.++.. ++++||++|+++|+.|+++.++++
T Consensus 245 ~~~~~r~~Q~~ai~~i--l~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~ 322 (936)
T 4a2w_A 245 ETKKARSYQIELAQPA--INGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (936)
T ss_dssp ---CCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHH--HcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 5788999999 99988 56899999999999999998776643 567899999999999999999865
Q ss_pred -CCceeEeeCCeeccc------CCCceEEEceeecc---------ccCCccEEEEecCcccCCCCCChhHHHHHhcc---
Q 010836 125 -NVSCDLITGQEREEV------DGAKHRAVTVEMAD---------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGI--- 185 (499)
Q Consensus 125 -g~~~~~~~g~~~~~~------~~~~~iv~T~e~~~---------~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l--- 185 (499)
++++..++|+..... .+.+++|+||+.+. .+.+++++||||||++... +. +...+..+
T Consensus 323 ~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~--~~-~~~i~~~~~~~ 399 (936)
T 4a2w_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN--HP-YNVLMTRYLEQ 399 (936)
T ss_dssp TTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTT--CH-HHHHHHHHHHH
T ss_pred cCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCC--cc-HHHHHHHHHHH
Confidence 899999999764332 25689999996652 3567899999999999854 32 33222111
Q ss_pred ----ccccceEeecCCCc------------hHHHHHHHHcCCeE--------------------EEEeeee-cC------
Q 010836 186 ----CANELHLCGDPAAV------------PLIQQILQVTGDDV--------------------KVQSYER-LS------ 222 (499)
Q Consensus 186 ----~~~~~~~~~~~~~~------------~~~~~l~~~~~~~~--------------------~~~~~~~-~~------ 222 (499)
.....++++.+++. ..+..+....+... ....+.. ..
T Consensus 400 ~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~ 479 (936)
T 4a2w_A 400 KFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAI 479 (936)
T ss_dssp HHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCCHHHHH
T ss_pred hhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCcHHHHH
Confidence 12234455555444 22222222222100 0000000 00
Q ss_pred ------------------------C-C--Cc-------------------------------------------------
Q 010836 223 ------------------------P-L--VP------------------------------------------------- 226 (499)
Q Consensus 223 ------------------------~-~--~~------------------------------------------------- 226 (499)
+ . ..
T Consensus 480 l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~al~i~ 559 (936)
T 4a2w_A 480 ISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIIS 559 (936)
T ss_dssp HHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 0 00
Q ss_pred ---------------------------------------------------cccc---c-cccc----ccCCCCEEEEe-
Q 010836 227 ---------------------------------------------------LNVP---L-GSFS----NIQTGDCIVTF- 246 (499)
Q Consensus 227 ---------------------------------------------------~~~~---l-~~l~----~~~~~~~iv~~- 246 (499)
.... + ..+. ......+|||+
T Consensus 560 ~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rvLIF~~ 639 (936)
T 4a2w_A 560 EDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAK 639 (936)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCEEEEES
T ss_pred cchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeEEEEeC
Confidence 0000 0 0111 12346677777
Q ss_pred eHHHHHHHHHHHHHcC-----------CCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEE
Q 010836 247 SRHAIYRLKKAIESRG-----------KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIF 314 (499)
Q Consensus 247 s~~~~~~l~~~L~~~~-----------~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~ 314 (499)
+++.++.+++.|.+.. +.....+||+|++.+|.++++.|++ +|+++|||||+++++|||+| +++||+
T Consensus 640 t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~-~g~~~VLVaT~~~~eGIDlp~v~~VI~ 718 (936)
T 4a2w_A 640 TRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKT-SKDNRLLIATSVADEGIDIVQCNLVVL 718 (936)
T ss_dssp SHHHHHHHHHHHHHCSTTSSCCCEEC-----------------------------CCSEEEEECC------CCCCSEEEE
T ss_pred CHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhc-cCCeeEEEEeCchhcCCcchhCCEEEE
Confidence 8999999999998861 2256677999999999999999996 37789999999999999997 999999
Q ss_pred cccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 315 ~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
++. |.+...|+||+|| ||... |.|+.+....
T Consensus 719 yD~---------p~s~~~~iQr~GR-GR~~~----g~vi~Li~~~ 749 (936)
T 4a2w_A 719 YEY---------SGNVTKMIQVRGR-GRAAG----SKCILVTSKT 749 (936)
T ss_dssp ESC---------CSCSHHHHCC--------C----CCEEEEESCH
T ss_pred eCC---------CCCHHHHHHhcCC-CCCCC----CEEEEEEeCC
Confidence 999 7799999999999 99955 7777776653
No 49
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.96 E-value=1.4e-28 Score=261.85 Aligned_cols=278 Identities=15% Similarity=0.072 Sum_probs=185.3
Q ss_pred ccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHh----cCCc
Q 010836 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNK----ANVS 127 (499)
Q Consensus 57 ~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~r~La~q~~~~l~~----~g~~ 127 (499)
.|+ .++++|. ++|.+ ++|+ +..++||+|||++|..++. .+..++|++||++||.|.++.+.. +|++
T Consensus 80 lG~-~pt~VQ~~~ip~l--l~G~--Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~ 154 (844)
T 1tf5_A 80 TGM-FPFKVQLMGGVAL--HDGN--IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLT 154 (844)
T ss_dssp HSC-CCCHHHHHHHHHH--HTTS--EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCC-CCcHHHHHhhHHH--hCCC--EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCe
Confidence 389 9999999 99988 5677 9999999999999854443 456889999999999999988774 5899
Q ss_pred eeEeeCCeecc----cCCCceEEEceeec------c---------ccCCccEEEEecCcccC-CCCCC------------
Q 010836 128 CDLITGQEREE----VDGAKHRAVTVEMA------D---------VVSDYDCAVIDEIQMLG-CKTRG------------ 175 (499)
Q Consensus 128 ~~~~~g~~~~~----~~~~~~iv~T~e~~------~---------~l~~~~~iViDEah~~~-~~~~g------------ 175 (499)
+++++|+.... ..+++++++||..+ + .++++.++||||||.++ |..+.
T Consensus 155 v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~ 234 (844)
T 1tf5_A 155 VGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKST 234 (844)
T ss_dssp EEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCC
T ss_pred EEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccch
Confidence 99998875322 12578999999333 1 13678999999999987 54221
Q ss_pred -h--hHHHHHhcccc--------ccceEe-----------------ecCCCc-hHHHHHHH---H---c--CCeEEEE--
Q 010836 176 -F--SFTRALLGICA--------NELHLC-----------------GDPAAV-PLIQQILQ---V---T--GDDVKVQ-- 216 (499)
Q Consensus 176 -~--~~~~~ll~l~~--------~~~~~~-----------------~~~~~~-~~~~~l~~---~---~--~~~~~~~-- 216 (499)
+ ....++-.+.. +.-++. ..+++. .....+.. . . ...+.+.
T Consensus 235 ~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg 314 (844)
T 1tf5_A 235 KLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDG 314 (844)
T ss_dssp HHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETT
T ss_pred hHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecC
Confidence 1 11222323321 111111 112221 11111110 0 0 0001100
Q ss_pred --------------------------------------------e---eee----------------------------c
Q 010836 217 --------------------------------------------S---YER----------------------------L 221 (499)
Q Consensus 217 --------------------------------------------~---~~~----------------------------~ 221 (499)
. |.+ .
T Consensus 315 ~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~e~~~iY~l~vv~ 394 (844)
T 1tf5_A 315 QVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVT 394 (844)
T ss_dssp EEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCCEEE
T ss_pred eeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHHHHHHHhCCceEE
Confidence 0 000 0
Q ss_pred CC----CCc-------------ccccc-cccccc--CCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHH
Q 010836 222 SP----LVP-------------LNVPL-GSFSNI--QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 280 (499)
Q Consensus 222 ~~----~~~-------------~~~~l-~~l~~~--~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~ 280 (499)
.| ... +...+ ..+... ....+|||+ |++.++.+++.|.+.+. .+.++||++.+.+|..
T Consensus 395 IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi-~~~vLhg~~~~rEr~i 473 (844)
T 1tf5_A 395 IPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGI-PHQVLNAKNHEREAQI 473 (844)
T ss_dssp CCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTC-CCEEECSSCHHHHHHH
T ss_pred ecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCC-CEEEeeCCccHHHHHH
Confidence 00 000 00001 112111 234577777 99999999999999887 8999999998888776
Q ss_pred HHHHhcCCCCCccEEEecchhhcccccc---------ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEE
Q 010836 281 QATRFNDASSEFDVLVASDAIGMGLNLN---------ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGE 351 (499)
Q Consensus 281 ~~~~f~~~~g~~~iLvaT~~~~~Gidip---------v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~ 351 (499)
+.+.|+. | .|+||||+++||+||+ +.+||+++. |.+...|.||+||+||.|.. |.
T Consensus 474 i~~ag~~--g--~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~---------p~s~r~y~hr~GRTGRqG~~---G~ 537 (844)
T 1tf5_A 474 IEEAGQK--G--AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTER---------HESRRIDNQLRGRSGRQGDP---GI 537 (844)
T ss_dssp HTTTTST--T--CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSC---------CSSHHHHHHHHTTSSGGGCC---EE
T ss_pred HHHcCCC--C--eEEEeCCccccCcCccccchhhhcCCcEEEEecC---------CCCHHHHHhhcCccccCCCC---Ce
Confidence 6666665 5 6999999999999997 569999999 77999999999999999998 87
Q ss_pred EEEEc
Q 010836 352 VTCLD 356 (499)
Q Consensus 352 ~~~~~ 356 (499)
++.+.
T Consensus 538 s~~~v 542 (844)
T 1tf5_A 538 TQFYL 542 (844)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 75553
No 50
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.95 E-value=7.4e-28 Score=257.24 Aligned_cols=280 Identities=14% Similarity=0.081 Sum_probs=167.7
Q ss_pred CCCCchhc-cchHHHhc---CCceEEEEccCCccHHHHHHHHH---H----------cCCCEEEEccHHHHHHHHH-HHH
Q 010836 60 TDLTRPHT-WYPLARKK---VRKVILHVGPTNSGKTHQALSRL---E----------SSSSGIYCGPLRLLAWEVA-KRL 121 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~---~~~~vli~apTGsGKT~~~l~~l---~----------~~~~~l~l~P~r~La~q~~-~~l 121 (499)
..+++.|. +++.+... .++++++++|||||||++++..+ . ..+++||++|+++|+.|+. +.+
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~~ 256 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKTF 256 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------CC
T ss_pred CCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 46999999 88876421 35779999999999999975443 2 3468899999999999999 888
Q ss_pred HhcCCceeEeeCCeecccCCCceEEEceeeccc------------cCCccEEEEecCcccCCCCCChhHHHHHhcccccc
Q 010836 122 NKANVSCDLITGQEREEVDGAKHRAVTVEMADV------------VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANE 189 (499)
Q Consensus 122 ~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~~------------l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~ 189 (499)
+.++..+..+.+... ..+..++++|++.+.. ...+++|||||||++.... +..+...+-.+...
T Consensus 257 ~~~~~~~~~~~~~~~--~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~-~~~~~~il~~~~~~- 332 (590)
T 3h1t_A 257 TPFGDARHKIEGGKV--VKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARD-NSNWREILEYFEPA- 332 (590)
T ss_dssp TTTCSSEEECCC--C--CSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----------CHHHHHHSTTS-
T ss_pred HhcchhhhhhhccCC--CCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccc-hHHHHHHHHhCCcc-
Confidence 888877776665432 2367899999966532 2568999999999987531 12333444333322
Q ss_pred ceEeecCCCch--HHHHHHHHcCC-----------------eEEEEeeeecCCC--------------------Cccccc
Q 010836 190 LHLCGDPAAVP--LIQQILQVTGD-----------------DVKVQSYERLSPL--------------------VPLNVP 230 (499)
Q Consensus 190 ~~~~~~~~~~~--~~~~l~~~~~~-----------------~~~~~~~~~~~~~--------------------~~~~~~ 230 (499)
.+++.+++.. .........+. .+.+......... ......
T Consensus 333 -~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (590)
T 3h1t_A 333 -FQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGEYQTKD 411 (590)
T ss_dssp -EEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC-----------------------CCS
T ss_pred -eEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccccccccccccccccCCHHH
Confidence 2333333321 11111222221 1111111000000 000000
Q ss_pred -----------------c-cccccc-CCCCEEEEe-eHHHHHHHHHHHHHcCC-------CeEEEEcCCCCHHHHHHHHH
Q 010836 231 -----------------L-GSFSNI-QTGDCIVTF-SRHAIYRLKKAIESRGK-------HLCSIVYGSLPPETRTRQAT 283 (499)
Q Consensus 231 -----------------l-~~l~~~-~~~~~iv~~-s~~~~~~l~~~L~~~~~-------~~v~~~hg~l~~~~R~~~~~ 283 (499)
+ ..+... ..++++||+ +++.++.+++.|.+.+. ..+..+||+++. +|..+++
T Consensus 412 ~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r~~~l~ 490 (590)
T 3h1t_A 412 FERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IGKGHLS 490 (590)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HHHHHHH
T ss_pred hhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HHHHHHH
Confidence 0 001111 235667777 89999999999977532 237889999764 7999999
Q ss_pred HhcCCCCCcc---EEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHhhhccCCCCCC--CCCcEEEEEEc
Q 010836 284 RFNDASSEFD---VLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGS--KFPVGEVTCLD 356 (499)
Q Consensus 284 ~f~~~~g~~~---iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~--~~~~g~~~~~~ 356 (499)
.|++ ++.+ |||||+++++|+|+| +++||+++. |.+...|+||+||+||.++ ++..+.++-+.
T Consensus 491 ~F~~--~~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~---------~~s~~~~~Q~iGR~~R~~~~~~k~~~~I~D~~ 558 (590)
T 3h1t_A 491 RFQE--LETSTPVILTTSQLLTTGVDAPTCKNVVLARV---------VNSMSEFKQIVGRGTRLREDYGKLWFNIIDYT 558 (590)
T ss_dssp HHHC--TTCCCCCEEEESSTTTTTCCCTTEEEEEEESC---------CCCHHHHHHHHTTSCCCBGGGTBSCEEEEECS
T ss_pred HHhC--CCCCCCEEEEECChhhcCccchheeEEEEEec---------CCChHHHHHHHhhhcccCccCCCCEEEEEecC
Confidence 9999 6655 899999999999998 999999988 6699999999999999886 33445555554
No 51
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.94 E-value=1.2e-26 Score=259.04 Aligned_cols=286 Identities=17% Similarity=0.164 Sum_probs=188.6
Q ss_pred CCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----cC--CCEEEEccHHHHHHHHHHHH-HhcCCceeEe
Q 010836 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----SS--SSGIYCGPLRLLAWEVAKRL-NKANVSCDLI 131 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~----~~--~~~l~l~P~r~La~q~~~~l-~~~g~~~~~~ 131 (499)
..|++.|. ++..+....+..+++.++||+|||.+++..+. .+ ++++|++|+ .|+.|+.+.+ +.++.++.++
T Consensus 152 ~~LrpyQ~eav~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l~v~v~ 230 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNLRFALF 230 (968)
T ss_dssp SCCCHHHHHHHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCCCCEEC
T ss_pred CCCcHHHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCCCEEEE
Confidence 56899999 88777655567899999999999999855442 23 389999999 9999999998 4678888887
Q ss_pred eCCee--------cccCCCceEEEceeeccc---------cCCccEEEEecCcccCCCCCCh-hHHHHHhccccccceEe
Q 010836 132 TGQER--------EEVDGAKHRAVTVEMADV---------VSDYDCAVIDEIQMLGCKTRGF-SFTRALLGICANELHLC 193 (499)
Q Consensus 132 ~g~~~--------~~~~~~~~iv~T~e~~~~---------l~~~~~iViDEah~~~~~~~g~-~~~~~ll~l~~~~~~~~ 193 (499)
+|... .......++++|++.+.. ..++++|||||||++....... .....+..+.....+++
T Consensus 231 ~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l~~L~~~~~~~L 310 (968)
T 3dmq_A 231 DDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAIEQLAEHVPGVL 310 (968)
T ss_dssp CHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHHHHHHTTCSSEE
T ss_pred ccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHHHHHhhcCCcEE
Confidence 76431 222356789999876621 2579999999999997543221 11222222211111112
Q ss_pred ecCCCc-h-----HH------------------HH---------HHHHc-------------------------------
Q 010836 194 GDPAAV-P-----LI------------------QQ---------ILQVT------------------------------- 209 (499)
Q Consensus 194 ~~~~~~-~-----~~------------------~~---------l~~~~------------------------------- 209 (499)
+.+++. . +. .. .....
T Consensus 311 ~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l~~~~~~~l~~~~~ 390 (968)
T 3dmq_A 311 LLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMIGEQDIEPLLQAAN 390 (968)
T ss_dssp ESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTTCTTCSSTTGGGTC
T ss_pred EEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHhcchhhHHHHhccc
Confidence 222111 0 00 00 00000
Q ss_pred ---------------------C-CeEEE-------Eeee-e-----cCCC------------------------------
Q 010836 210 ---------------------G-DDVKV-------QSYE-R-----LSPL------------------------------ 224 (499)
Q Consensus 210 ---------------------~-~~~~~-------~~~~-~-----~~~~------------------------------ 224 (499)
+ ....+ ..+. + ..++
T Consensus 391 ~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p 470 (968)
T 3dmq_A 391 SDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGARKSAEDRARDMLYP 470 (968)
T ss_dssp CCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCCSSGGGGTHHHHCS
T ss_pred chhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhhhhhHHHHhhhcCh
Confidence 0 00000 0000 0 0000
Q ss_pred ------------Cc-----ccccc-ccccccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHh
Q 010836 225 ------------VP-----LNVPL-GSFSNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRF 285 (499)
Q Consensus 225 ------------~~-----~~~~l-~~l~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f 285 (499)
.. +...+ ..+.....++++||+ ++..++.+++.|.+..+.++..+||++++.+|..+++.|
T Consensus 471 e~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~~~~~~R~~~l~~F 550 (968)
T 3dmq_A 471 ERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWF 550 (968)
T ss_dssp GGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTTSCTTHHHHHHHHH
T ss_pred HHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHH
Confidence 00 00000 111122455677777 899999999999865344899999999999999999999
Q ss_pred cCCCCC--ccEEEecchhhcccccc-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC
Q 010836 286 NDASSE--FDVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 286 ~~~~g~--~~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~ 358 (499)
++ |+ ++|||||+++++|+|+| +++||+++. |.+...|.||+||+||.|.. +...++.+..+
T Consensus 551 ~~--g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~---------p~~~~~~~Q~~GR~~R~Gq~-~~v~v~~~~~~ 614 (968)
T 3dmq_A 551 AE--EDTGAQVLLCSEIGSEGRNFQFASHMVMFDL---------PFNPDLLEQRIGRLDRIGQA-HDIQIHVPYLE 614 (968)
T ss_dssp HS--TTSSCEEEECSCCTTCSSCCTTCCEEECSSC---------CSSHHHHHHHHHTTSCSSSC-SCCEEEEEEET
T ss_pred hC--CCCcccEEEecchhhcCCCcccCcEEEEecC---------CCCHHHHHHHhhccccCCCC-ceEEEEEecCC
Confidence 99 76 99999999999999998 999999999 77999999999999999987 33455554443
No 52
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.93 E-value=2.7e-26 Score=243.55 Aligned_cols=107 Identities=15% Similarity=-0.038 Sum_probs=85.9
Q ss_pred CCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHh----cCCceeE
Q 010836 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNK----ANVSCDL 130 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l----~~~~~~l~l~P~r~La~q~~~~l~~----~g~~~~~ 130 (499)
..++++|. ++|.+ ++|+ +..++||||||++|..++ +.+..+++++||++||.|+++.+.. +|+++++
T Consensus 73 ~~p~~VQ~~~i~~l--l~G~--Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l~~~lgl~v~~ 148 (853)
T 2fsf_A 73 MRHFDVQLLGGMVL--NERC--IAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPLFEFLGLTVGI 148 (853)
T ss_dssp CCCCHHHHHHHHHH--HSSE--EEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCChHHHhhcccc--cCCe--eeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHHHHhcCCeEEE
Confidence 38999999 99988 5677 999999999999985444 3456889999999999999988774 4899999
Q ss_pred eeCCeecc----cCCCceEEEceeec--c-------------ccCCccEEEEecCcccC
Q 010836 131 ITGQEREE----VDGAKHRAVTVEMA--D-------------VVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 131 ~~g~~~~~----~~~~~~iv~T~e~~--~-------------~l~~~~~iViDEah~~~ 170 (499)
++|+.... ..+..++++||..+ + .++++.++||||||.++
T Consensus 149 i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mL 207 (853)
T 2fsf_A 149 NLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSIL 207 (853)
T ss_dssp CCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHT
T ss_pred EeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHH
Confidence 99875432 12578999999443 2 13789999999999988
No 53
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.93 E-value=8.1e-26 Score=240.19 Aligned_cols=279 Identities=17% Similarity=0.133 Sum_probs=185.6
Q ss_pred ccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHh----cCCc
Q 010836 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNK----ANVS 127 (499)
Q Consensus 57 ~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l----~~~~~~l~l~P~r~La~q~~~~l~~----~g~~ 127 (499)
.|+ .++++|. ++|.+ ++|+ +..++||+|||+++..++ +.+..++|++||++||.|.++.+.. +|++
T Consensus 108 lG~-rP~~VQ~~~ip~L--l~G~--Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLs 182 (922)
T 1nkt_A 108 LDQ-RPFDVQVMGAAAL--HLGN--VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQ 182 (922)
T ss_dssp HSC-CCCHHHHHHHHHH--HTTE--EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCC
T ss_pred cCC-CCCHHHHHHHHhH--hcCC--EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCe
Confidence 477 9999999 99988 5577 999999999999974333 3466899999999999999988774 5999
Q ss_pred eeEeeCCeecc----cCCCceEEEceeec--c-------------ccCCccEEEEecCcccC-CCCC-------------
Q 010836 128 CDLITGQEREE----VDGAKHRAVTVEMA--D-------------VVSDYDCAVIDEIQMLG-CKTR------------- 174 (499)
Q Consensus 128 ~~~~~g~~~~~----~~~~~~iv~T~e~~--~-------------~l~~~~~iViDEah~~~-~~~~------------- 174 (499)
+++++|+.... ..+++++++|+..+ + .++++.++||||||.++ |..+
T Consensus 183 v~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~ 262 (922)
T 1nkt_A 183 VGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGAS 262 (922)
T ss_dssp EEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCH
T ss_pred EEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcch
Confidence 99998875422 12578999998433 1 13679999999999987 3311
Q ss_pred Ch--hHHHHHhcccc--------ccceEe-----------------ecCCC-chHHHHHHH---H---c--CCeEEEE--
Q 010836 175 GF--SFTRALLGICA--------NELHLC-----------------GDPAA-VPLIQQILQ---V---T--GDDVKVQ-- 216 (499)
Q Consensus 175 g~--~~~~~ll~l~~--------~~~~~~-----------------~~~~~-~~~~~~l~~---~---~--~~~~~~~-- 216 (499)
++ ....++-.+.. +.-++. -.+++ .+....+.. . . ...+.+.
T Consensus 263 ~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg 342 (922)
T 1nkt_A 263 NWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDG 342 (922)
T ss_dssp HHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSS
T ss_pred hHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecC
Confidence 11 12233333331 111221 11222 111111110 0 0 0001100
Q ss_pred --------------------------------------------e---eee-----------------------------
Q 010836 217 --------------------------------------------S---YER----------------------------- 220 (499)
Q Consensus 217 --------------------------------------------~---~~~----------------------------- 220 (499)
. |.+
T Consensus 343 ~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~ 422 (922)
T 1nkt_A 343 EVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVS 422 (922)
T ss_dssp CEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEE
T ss_pred ceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEE
Confidence 0 000
Q ss_pred ---cCCCCcc-------------cccc-ccccc-cCCC-CEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHH
Q 010836 221 ---LSPLVPL-------------NVPL-GSFSN-IQTG-DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTR 280 (499)
Q Consensus 221 ---~~~~~~~-------------~~~l-~~l~~-~~~~-~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~ 280 (499)
..|.... ...+ ..+.. ...+ .++||+ |+..++.+++.|.+.+. .+.++||+....++..
T Consensus 423 IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi-~~~vLnak~~~rEa~i 501 (922)
T 1nkt_A 423 IPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRI-PHNVLNAKYHEQEATI 501 (922)
T ss_dssp CCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTC-CCEEECSSCHHHHHHH
T ss_pred eCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCC-CEEEecCChhHHHHHH
Confidence 0000000 0000 11111 1233 477777 89999999999999887 8999999988777777
Q ss_pred HHHHhcCCCCCccEEEecchhhcccccc-c--------------------------------------------------
Q 010836 281 QATRFNDASSEFDVLVASDAIGMGLNLN-I-------------------------------------------------- 309 (499)
Q Consensus 281 ~~~~f~~~~g~~~iLvaT~~~~~Gidip-v-------------------------------------------------- 309 (499)
+.+.|+. | .|+||||+++||+||+ +
T Consensus 502 ia~agr~--G--~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~ 577 (922)
T 1nkt_A 502 IAVAGRR--G--GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEA 577 (922)
T ss_dssp HHTTTST--T--CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred HHhcCCC--C--eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhc
Confidence 7788887 6 6999999999999997 4
Q ss_pred --cEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcC
Q 010836 310 --SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (499)
Q Consensus 310 --~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~ 357 (499)
.+||+++. |.|...|.||+||+||.|.. |....+.+
T Consensus 578 GGlhVI~te~---------pes~riy~qr~GRTGRqGdp---G~s~fflS 615 (922)
T 1nkt_A 578 GGLYVLGTER---------HESRRIDNQLRGRSGRQGDP---GESRFYLS 615 (922)
T ss_dssp TSEEEEECSC---------CSSHHHHHHHHHTSSGGGCC---EEEEEEEE
T ss_pred CCcEEEeccC---------CCCHHHHHHHhcccccCCCC---eeEEEEec
Confidence 49999998 77999999999999999998 87655543
No 54
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.93 E-value=5.6e-25 Score=230.35 Aligned_cols=284 Identities=15% Similarity=0.144 Sum_probs=185.7
Q ss_pred CCCCchhc-cchHHHh--cCCceEEEEccCCccHHHHHHHHHH---c---CCCEEEEccHHHHHHHHHHHHHhc--CCce
Q 010836 60 TDLTRPHT-WYPLARK--KVRKVILHVGPTNSGKTHQALSRLE---S---SSSGIYCGPLRLLAWEVAKRLNKA--NVSC 128 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~--~~~~~vli~apTGsGKT~~~l~~l~---~---~~~~l~l~P~r~La~q~~~~l~~~--g~~~ 128 (499)
..|++.|. ++..+.. ..++.+++..+||+|||.+++..+. . .+++||++| ..|+.|+.+.+.++ +.++
T Consensus 36 ~~L~~~Q~~~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P-~~l~~qw~~e~~~~~~~~~v 114 (500)
T 1z63_A 36 ANLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICP-LSVLKNWEEELSKFAPHLRF 114 (500)
T ss_dssp SCCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEEC-STTHHHHHHHHHHHCTTSCE
T ss_pred ccchHHHHHHHHHHHHHhhCCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEcc-HHHHHHHHHHHHHHCCCceE
Confidence 46889998 7765532 3577899999999999999754432 2 258899999 56889999999876 4667
Q ss_pred eEeeCCeec-ccCCCceEEEceeeccc-----cCCccEEEEecCcccCCCCCChhHHHHHhccccccceEeecCCCch-H
Q 010836 129 DLITGQERE-EVDGAKHRAVTVEMADV-----VSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAVP-L 201 (499)
Q Consensus 129 ~~~~g~~~~-~~~~~~~iv~T~e~~~~-----l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~~-~ 201 (499)
.+++|.... ...+.+++++|++.+.. ...++++|+||||++.+. +......+..+.+.. +++.+.++.. .
T Consensus 115 ~~~~g~~~~~~~~~~~ivi~t~~~l~~~~~l~~~~~~~vIvDEaH~~kn~--~~~~~~~l~~l~~~~-~l~LTaTP~~n~ 191 (500)
T 1z63_A 115 AVFHEDRSKIKLEDYDIILTTYAVLLRDTRLKEVEWKYIVIDEAQNIKNP--QTKIFKAVKELKSKY-RIALTGTPIENK 191 (500)
T ss_dssp EECSSSTTSCCGGGSSEEEEEHHHHTTCHHHHTCCEEEEEEETGGGGSCT--TSHHHHHHHTSCEEE-EEEECSSCSTTC
T ss_pred EEEecCchhccccCCcEEEeeHHHHhccchhcCCCcCEEEEeCccccCCH--hHHHHHHHHhhccCc-EEEEecCCCCCC
Confidence 777776532 22356788999876643 257899999999999754 445566666654432 2222222211 1
Q ss_pred HHH-------------------------------------HHHHc------------------CCeEEEEeeeecCCCC-
Q 010836 202 IQQ-------------------------------------ILQVT------------------GDDVKVQSYERLSPLV- 225 (499)
Q Consensus 202 ~~~-------------------------------------l~~~~------------------~~~~~~~~~~~~~~~~- 225 (499)
..+ +.... +.......+....+..
T Consensus 192 ~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp~~~~~~v~~~l~~~~~ 271 (500)
T 1z63_A 192 VDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLPDKIETNVYCNLTPEQA 271 (500)
T ss_dssp HHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSCSEEEEEEEECCCHHHH
T ss_pred HHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCCCCeEEEEEcCCCHHHH
Confidence 111 10000 1111100000000000
Q ss_pred ---------------c-----------------------------------cccc---c-cccccc--CCCCEEEEe-eH
Q 010836 226 ---------------P-----------------------------------LNVP---L-GSFSNI--QTGDCIVTF-SR 248 (499)
Q Consensus 226 ---------------~-----------------------------------~~~~---l-~~l~~~--~~~~~iv~~-s~ 248 (499)
. .... + ..+.+. ...+++||+ ++
T Consensus 272 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~ 351 (500)
T 1z63_A 272 AMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIEEALDEGDKIAIFTQFV 351 (500)
T ss_dssp HHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHHHHHTTTCCEEEECSCH
T ss_pred HHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHHHHHccCCcEEEEEehH
Confidence 0 0000 0 011111 344667776 79
Q ss_pred HHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCC-Cc-cEEEecchhhcccccc-ccEEEEcccccccCccc
Q 010836 249 HAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASS-EF-DVLVASDAIGMGLNLN-ISRIIFSTMKKFDGVEL 325 (499)
Q Consensus 249 ~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g-~~-~iLvaT~~~~~Gidip-v~~VI~~~~~~~~~~~~ 325 (499)
..++.+++.|.+..+..+..+||+++.++|.++++.|++ + .. .+|+||+++++|+|+| +++||+++.
T Consensus 352 ~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~--~~~~~vil~st~~~~~Glnl~~~~~vi~~d~-------- 421 (500)
T 1z63_A 352 DMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQN--NPSVKFIVLSVKAGGFGINLTSANRVIHFDR-------- 421 (500)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHH--CTTCCCCEEECCCC-CCCCCTTCSEEEESSC--------
T ss_pred HHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcC--CCCCCEEEEecccccCCCchhhCCEEEEeCC--------
Confidence 999999999987633389999999999999999999998 5 34 4899999999999997 999999998
Q ss_pred cccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 326 RDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 326 ~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
|+++..+.||+||++|.|+. ....++.+...+
T Consensus 422 -~~~~~~~~Q~~gR~~R~Gq~-~~v~v~~lv~~~ 453 (500)
T 1z63_A 422 -WWNPAVEDQATDRVYRIGQT-RNVIVHKLISVG 453 (500)
T ss_dssp -CSCC---CHHHHTTTTTTTT-SCEEEEEEEETT
T ss_pred -CCCcchHHHHHHHHHHcCCC-CeeEEEEEEeCC
Confidence 78999999999999999986 445666665544
No 55
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.88 E-value=5.8e-22 Score=212.86 Aligned_cols=108 Identities=22% Similarity=0.258 Sum_probs=93.0
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCc---cEEEecchhhcccccc-ccEEE
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEF---DVLVASDAIGMGLNLN-ISRII 313 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~---~iLvaT~~~~~Gidip-v~~VI 313 (499)
..++|||. .+..++.+.+.|...+. .+..+||+++.++|.++++.|++ +.. .+|++|+++++|+|++ +++||
T Consensus 416 ~~k~lIFs~~~~~~~~l~~~l~~~g~-~~~~l~G~~~~~~R~~~i~~F~~--~~~~~~v~L~st~a~g~Glnl~~a~~Vi 492 (644)
T 1z3i_X 416 SDKVVLVSNYTQTLDLFEKLCRNRRY-LYVRLDGTMSIKKRAKIVERFNN--PSSPEFIFMLSSKAGGCGLNLIGANRLV 492 (644)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTC-CEEEECSSCCHHHHHHHHHHHHS--TTCCCCEEEEEGGGSCTTCCCTTEEEEE
T ss_pred CCEEEEEEccHHHHHHHHHHHHHCCC-CEEEEeCCCCHHHHHHHHHHhcC--CCCCcEEEEEecccccCCcccccCCEEE
Confidence 34456665 78999999999988877 89999999999999999999999 543 5899999999999996 99999
Q ss_pred EcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 314 ~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
+++. |+++..+.|++||++|.|+. ....+|.+...+
T Consensus 493 ~~d~---------~wnp~~~~Qa~gR~~R~Gq~-~~v~v~~lv~~~ 528 (644)
T 1z3i_X 493 MFDP---------DWNPANDEQAMARVWRDGQK-KTCYIYRLLSTG 528 (644)
T ss_dssp ECSC---------CSSHHHHHHHHTTSSSTTCC-SCEEEEEEEETT
T ss_pred EECC---------CCCccHHHHHHHhhhhcCCC-CceEEEEEEECC
Confidence 9999 88999999999999999986 446777665554
No 56
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.88 E-value=1.1e-21 Score=215.78 Aligned_cols=285 Identities=16% Similarity=0.127 Sum_probs=188.7
Q ss_pred CCCCchhc-cchHHH--hcCCceEEEEccCCccHHHHHHHHHH-------cCCCEEEEccHHHHHHHHHHHHHhc--CCc
Q 010836 60 TDLTRPHT-WYPLAR--KKVRKVILHVGPTNSGKTHQALSRLE-------SSSSGIYCGPLRLLAWEVAKRLNKA--NVS 127 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~--~~~~~~vli~apTGsGKT~~~l~~l~-------~~~~~l~l~P~r~La~q~~~~l~~~--g~~ 127 (499)
..|++.|. ++..+. ...+++.++..+||+|||++++..+. ..+.+||++| .+|+.|+.+.+.++ +..
T Consensus 235 ~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p~~~ 313 (800)
T 3mwy_W 235 GELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAPDLN 313 (800)
T ss_dssp SCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHSTTCC
T ss_pred CCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCCCce
Confidence 46888898 766442 23688999999999999999755442 2467899999 67888899998875 567
Q ss_pred eeEeeCCeec------------------ccCCCceEEEceeeccc------cCCccEEEEecCcccCCCCCChhHHHHHh
Q 010836 128 CDLITGQERE------------------EVDGAKHRAVTVEMADV------VSDYDCAVIDEIQMLGCKTRGFSFTRALL 183 (499)
Q Consensus 128 ~~~~~g~~~~------------------~~~~~~~iv~T~e~~~~------l~~~~~iViDEah~~~~~~~g~~~~~~ll 183 (499)
+...+|.... ......++++|++++.. ..++++|||||||++.+. .......+.
T Consensus 314 v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~lkn~--~s~~~~~l~ 391 (800)
T 3mwy_W 314 CICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRLKNA--ESSLYESLN 391 (800)
T ss_dssp EEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGGCCS--SSHHHHHHT
T ss_pred EEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhhcCc--hhHHHHHHH
Confidence 7777775421 12245688999877632 247899999999999743 445556655
Q ss_pred ccccccceEeecCCCc----h-------------------------------HHHHHHHHc----------------CCe
Q 010836 184 GICANELHLCGDPAAV----P-------------------------------LIQQILQVT----------------GDD 212 (499)
Q Consensus 184 ~l~~~~~~~~~~~~~~----~-------------------------------~~~~l~~~~----------------~~~ 212 (499)
.+.+... ++.+.+++ . .+..+.... +..
T Consensus 392 ~l~~~~r-l~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k~dv~~~LP~k 470 (800)
T 3mwy_W 392 SFKVANR-MLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLKKDVEKSLPSK 470 (800)
T ss_dssp TSEEEEE-EEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCGGGGTTTSCCE
T ss_pred HhhhccE-EEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhHHhhhhccCCc
Confidence 5433222 21111111 0 011111100 000
Q ss_pred EEEEeeeecCCC----------------Cc--------------------------------------------------
Q 010836 213 VKVQSYERLSPL----------------VP-------------------------------------------------- 226 (499)
Q Consensus 213 ~~~~~~~~~~~~----------------~~-------------------------------------------------- 226 (499)
.....+..+.+. ..
T Consensus 471 ~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~ 550 (800)
T 3mwy_W 471 TERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFGDGKMTRENVLRG 550 (800)
T ss_dssp EEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC----CCSHHHHHH
T ss_pred EEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcccccccHHHHHHH
Confidence 000000000000 00
Q ss_pred ------ccccc-cccccc--CCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCC-CCccEE
Q 010836 227 ------LNVPL-GSFSNI--QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDAS-SEFDVL 295 (499)
Q Consensus 227 ------~~~~l-~~l~~~--~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~-g~~~iL 295 (499)
+...+ ..+... ...++|||. ....++.+.+.|...+. .+..+||+++..+|..+++.|++++ +...+|
T Consensus 551 l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~-~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~L 629 (800)
T 3mwy_W 551 LIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGI-NFQRLDGTVPSAQRRISIDHFNSPDSNDFVFL 629 (800)
T ss_dssp HHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTC-CCEEESTTSCHHHHHHHHHTTSSTTCSCCCEE
T ss_pred hhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCC-CEEEEeCCCCHHHHHHHHHHhhCCCCCceEEE
Confidence 00000 001111 234566666 68999999999988876 8999999999999999999999822 233699
Q ss_pred Eecchhhcccccc-ccEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 296 VASDAIGMGLNLN-ISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 296 vaT~~~~~Gidip-v~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
++|.+++.|+|++ +++||+++. |+++..+.|++||++|.|+. ....||.+...+
T Consensus 630 lSt~agg~GlNL~~a~~VI~~D~---------~wnp~~~~Qa~gR~~RiGQ~-k~V~Vyrlv~~~ 684 (800)
T 3mwy_W 630 LSTRAGGLGINLMTADTVVIFDS---------DWNPQADLQAMARAHRIGQK-NHVMVYRLVSKD 684 (800)
T ss_dssp EEHHHHTTTCCCTTCCEEEESSC---------CSCSHHHHHHHTTTSCSSCC-SCEEEEEEEETT
T ss_pred EecccccCCCCccccceEEEecC---------CCChhhHHHHHHHHHhcCCC-ceEEEEEEecCC
Confidence 9999999999997 999999999 78999999999999999986 557777776554
No 57
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.86 E-value=6.5e-21 Score=211.67 Aligned_cols=282 Identities=13% Similarity=0.074 Sum_probs=174.4
Q ss_pred CCCCchhc-cchHHHhc------------CCceEEEEccCCccHHHHHHHHH--Hc----CCCEEEEccHHHHHHHHHHH
Q 010836 60 TDLTRPHT-WYPLARKK------------VRKVILHVGPTNSGKTHQALSRL--ES----SSSGIYCGPLRLLAWEVAKR 120 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~------------~~~~vli~apTGsGKT~~~l~~l--~~----~~~~l~l~P~r~La~q~~~~ 120 (499)
..|+++|. +++.+... .+++.+++++||||||++++..+ .. ..++||++|+++|+.|+.+.
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 45999999 88887431 24789999999999999974322 22 24789999999999999999
Q ss_pred HHhcCCceeEeeCCee----c--ccCCCceEEEceeecc----------ccCCccEEEEecCcccCCCCCChhHHHHHhc
Q 010836 121 LNKANVSCDLITGQER----E--EVDGAKHRAVTVEMAD----------VVSDYDCAVIDEIQMLGCKTRGFSFTRALLG 184 (499)
Q Consensus 121 l~~~g~~~~~~~g~~~----~--~~~~~~~iv~T~e~~~----------~l~~~~~iViDEah~~~~~~~g~~~~~~ll~ 184 (499)
+..++... +..+... . ...+..++++|++.+. .+....++|+||||+... |..+..+.-.
T Consensus 350 f~~f~~~~-v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~---~~~~~~I~~~ 425 (1038)
T 2w00_A 350 YQRFSPDS-VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF---GEAQKNLKKK 425 (1038)
T ss_dssp HHTTSTTC-SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH---HHHHHHHHHH
T ss_pred HHHhcccc-cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc---hHHHHHHHHh
Confidence 99874321 1111111 1 1235788899985542 245678999999999753 2222222222
Q ss_pred cccccceEeecCCCchHH------HHHHHHcCCeE---------------EEE-eeeecCC-C-------C---------
Q 010836 185 ICANELHLCGDPAAVPLI------QQILQVTGDDV---------------KVQ-SYERLSP-L-------V--------- 225 (499)
Q Consensus 185 l~~~~~~~~~~~~~~~~~------~~l~~~~~~~~---------------~~~-~~~~~~~-~-------~--------- 225 (499)
++. ..+++.++|.... .......|..+ ++. .+....+ . .
T Consensus 426 ~p~--a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~ 503 (1038)
T 2w00_A 426 FKR--YYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAEN 503 (1038)
T ss_dssp CSS--EEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCS
T ss_pred CCc--ccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHH
Confidence 222 2333333332100 01111112211 111 1110000 0 0
Q ss_pred --c--cc----cccccccc----c--------CCCCEEEEe-eHHHHHHHHHHHHHcC-----------CCeE-EEEcCC
Q 010836 226 --P--LN----VPLGSFSN----I--------QTGDCIVTF-SRHAIYRLKKAIESRG-----------KHLC-SIVYGS 272 (499)
Q Consensus 226 --~--~~----~~l~~l~~----~--------~~~~~iv~~-s~~~~~~l~~~L~~~~-----------~~~v-~~~hg~ 272 (499)
. .. ..+..+.. . .....+||+ |+..|..+++.|.+.+ ..++ .++||+
T Consensus 504 ~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~ 583 (1038)
T 2w00_A 504 QQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFA 583 (1038)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCC
Confidence 0 00 00011100 0 123467766 8999999999998754 1244 455542
Q ss_pred ----------C----------CHH-----------------------------HHHHHHHHhcCCCCCccEEEecchhhc
Q 010836 273 ----------L----------PPE-----------------------------TRTRQATRFNDASSEFDVLVASDAIGM 303 (499)
Q Consensus 273 ----------l----------~~~-----------------------------~R~~~~~~f~~~~g~~~iLvaT~~~~~ 303 (499)
+ ++. .|..++++|++ |+++|||+|+++.+
T Consensus 584 ~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~--g~i~ILIvvd~llt 661 (1038)
T 2w00_A 584 ANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKN--QDIDLLIVVGMFLT 661 (1038)
T ss_dssp C------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHT--TSSSEEEESSTTSS
T ss_pred CccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHc--CCCeEEEEcchHHh
Confidence 2 221 37788999999 99999999999999
Q ss_pred cccccccEEEEcccccccCccccccChhhHHhhhccCCCCCCC-CCcEEEEEEcCC
Q 010836 304 GLNLNISRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-FPVGEVTCLDSE 358 (499)
Q Consensus 304 Gidipv~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~-~~~g~~~~~~~~ 358 (499)
|+|+|.-.|++++. |.+...|+|++||++|.+++ +..|.++.+...
T Consensus 662 GfDiP~l~tlylDk---------pl~~~~liQaIGRtnR~~~~~K~~G~IVdf~~~ 708 (1038)
T 2w00_A 662 GFDAPTLNTLFVDK---------NLRYHGLMQAFSRTNRIYDATKTFGNIVTFRDL 708 (1038)
T ss_dssp SCCCTTEEEEEEES---------CCCHHHHHHHHHTTCCCCCTTCCSEEEEESSCC
T ss_pred CcCcccccEEEEcc---------CCCccceeehhhccCcCCCCCCCcEEEEEcccc
Confidence 99999337788776 77899999999999999874 567999887754
No 58
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.84 E-value=1.7e-19 Score=193.66 Aligned_cols=111 Identities=19% Similarity=0.158 Sum_probs=97.7
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcc
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 316 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~ 316 (499)
..+++||+ |+..++.+++.|.+.+. .+..+||++++.+|.++++.|++ |+.+|||||+++++|+|+| +++||+++
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~gi-~~~~lh~~~~~~~R~~~~~~f~~--g~~~VLvaT~~l~~GlDip~v~lVI~~d 515 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEHGI-RARYLHHELDAFKRQALIRDLRL--GHYDCLVGINLLREGLDIPEVSLVAILD 515 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTCCHHHHHHHHHHHHT--TSCSEEEESCCCCTTCCCTTEEEEEETT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhcCC-CceeecCCCCHHHHHHHHHHhhc--CCceEEEccChhhcCccCCCCCEEEEeC
Confidence 45667776 89999999999999877 89999999999999999999999 9999999999999999997 99999999
Q ss_pred cccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCH
Q 010836 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL 360 (499)
Q Consensus 317 ~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~ 360 (499)
..+|.- |.+..+|+||+|||||.+. |.++.+.+...
T Consensus 516 ~d~~G~----p~s~~~~iQr~GRagR~~~----G~~i~~~~~~~ 551 (664)
T 1c4o_A 516 ADKEGF----LRSERSLIQTIGRAARNAR----GEVWLYADRVS 551 (664)
T ss_dssp TTSCSG----GGSHHHHHHHHGGGTTSTT----CEEEEECSSCC
T ss_pred CcccCC----CCCHHHHHHHHCccCcCCC----CEEEEEEcCCC
Confidence 755421 6689999999999999974 88888876643
No 59
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.83 E-value=9.3e-20 Score=189.94 Aligned_cols=102 Identities=21% Similarity=0.198 Sum_probs=85.2
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc----c----
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN----I---- 309 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip----v---- 309 (499)
...++||+ |++.++.+++.|.+.+. .+.++||+....++..+.+.|+. | .|+||||+++||+||+ |
T Consensus 474 gqpVLVFt~S~e~sE~Ls~~L~~~Gi-~~~vLhgkq~~rE~~ii~~ag~~--g--~VtVATdmAgRGtDI~lg~~V~~~G 548 (822)
T 3jux_A 474 GQPVLVGTTSIEKSELLSSMLKKKGI-PHQVLNAKYHEKEAEIVAKAGQK--G--MVTIATNMAGRGTDIKLGPGVAELG 548 (822)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTTC-CCEEECSCHHHHHHHHHHHHHST--T--CEEEEETTTTTTCCCCCCTTTTTTT
T ss_pred CCCEEEEECCHHHHHHHHHHHHHCCC-CEEEeeCCchHHHHHHHHhCCCC--C--eEEEEcchhhCCcCccCCcchhhcC
Confidence 44577777 99999999999998877 89999999766666666677776 5 5999999999999995 3
Q ss_pred -cEEEEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcC
Q 010836 310 -SRIIFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (499)
Q Consensus 310 -~~VI~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~ 357 (499)
.+||+++. |.+...|.||+||+||.|.. |.++.+.+
T Consensus 549 glhVInte~---------Pes~r~y~qriGRTGRqG~~---G~a~~fvs 585 (822)
T 3jux_A 549 GLCIIGTER---------HESRRIDNQLRGRAGRQGDP---GESIFFLS 585 (822)
T ss_dssp SCEEEESSC---------CSSHHHHHHHHTTSSCSSCC---CEEEEEEE
T ss_pred CCEEEecCC---------CCCHHHHHHhhCccccCCCC---eeEEEEec
Confidence 49999998 77999999999999999988 77654443
No 60
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.83 E-value=2.4e-20 Score=174.36 Aligned_cols=160 Identities=16% Similarity=0.074 Sum_probs=118.9
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-------------cCCCEE
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-------------SSSSGI 105 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~-------------~~~~~l 105 (499)
.+++.+.+.+.+. ||..++++|. +++.+ ++++++++++|||||||++++.++. .+.+++
T Consensus 26 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~--~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~l 98 (228)
T 3iuy_A 26 QQYPDLLKSIIRV-----GILKPTPIQSQAWPII--LQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGML 98 (228)
T ss_dssp TTCHHHHHHHHHH-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEE
T ss_pred ccCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEE
Confidence 5788999999988 9999999999 99998 5689999999999999999865443 345789
Q ss_pred EEccHHHHHHHHHHHHHhc---CCceeEeeCCeecc------cCCCceEEEceeecc--------ccCCccEEEEecCcc
Q 010836 106 YCGPLRLLAWEVAKRLNKA---NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQM 168 (499)
Q Consensus 106 ~l~P~r~La~q~~~~l~~~---g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~ 168 (499)
|++|+++|+.|++++++++ ++.+..++|+.... ..+.+++++||+.+. .+.+++++|+||||+
T Consensus 99 il~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~ 178 (228)
T 3iuy_A 99 VLTPTRELALHVEAECSKYSYKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADK 178 (228)
T ss_dssp EECSSHHHHHHHHHHHHHHCCTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHH
T ss_pred EEeCCHHHHHHHHHHHHHhcccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHH
Confidence 9999999999999999875 67777777764432 235689999996653 257899999999999
Q ss_pred cCCCCCChhHHHHHhccccccceEeecCCCc-hHHHHHHH
Q 010836 169 LGCKTRGFSFTRALLGICANELHLCGDPAAV-PLIQQILQ 207 (499)
Q Consensus 169 ~~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~-~~~~~l~~ 207 (499)
+.+..++..+...+..+ ....++++.+++. +.+.+++.
T Consensus 179 ~~~~~~~~~~~~i~~~~-~~~~~~l~~SAT~~~~~~~~~~ 217 (228)
T 3iuy_A 179 MLDMEFEPQIRKILLDV-RPDRQTVMTSATWPDTVRQLAL 217 (228)
T ss_dssp HHHTTCHHHHHHHHHHS-CSSCEEEEEESCCCHHHHHHHH
T ss_pred HhccchHHHHHHHHHhC-CcCCeEEEEEeeCCHHHHHHHH
Confidence 98654444444444444 3345666666554 34455554
No 61
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.82 E-value=7.1e-20 Score=161.90 Aligned_cols=110 Identities=24% Similarity=0.425 Sum_probs=99.4
Q ss_pred cccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEE
Q 010836 235 SNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRI 312 (499)
Q Consensus 235 ~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~V 312 (499)
.....+++|||+ +++.++.+++.|.+.+. .+..+||++++.+|..+++.|++ |+.+|||||+++++|+|+| +++|
T Consensus 31 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~~hg~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~Gld~~~~~~V 107 (163)
T 2hjv_A 31 MTENPDSCIIFCRTKEHVNQLTDELDDLGY-PCDKIHGGMIQEDRFDVMNEFKR--GEYRYLVATDVAARGIDIENISLV 107 (163)
T ss_dssp HHHCCSSEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHT--TSCSEEEECGGGTTTCCCSCCSEE
T ss_pred HhcCCCcEEEEECCHHHHHHHHHHHHHcCC-cEEEEeCCCCHHHHHHHHHHHHc--CCCeEEEECChhhcCCchhcCCEE
Confidence 334566788888 89999999999998876 89999999999999999999999 9999999999999999997 9999
Q ss_pred EEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 313 I~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
|+++. |.+..+|.||+||+||.|.. |.++.+....
T Consensus 108 i~~~~---------p~~~~~~~qr~GR~~R~g~~---g~~~~~~~~~ 142 (163)
T 2hjv_A 108 INYDL---------PLEKESYVHRTGRTGRAGNK---GKAISFVTAF 142 (163)
T ss_dssp EESSC---------CSSHHHHHHHTTTSSCTTCC---EEEEEEECGG
T ss_pred EEeCC---------CCCHHHHHHhccccCcCCCC---ceEEEEecHH
Confidence 99998 77999999999999999987 8887776543
No 62
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.82 E-value=3e-20 Score=171.54 Aligned_cols=109 Identities=21% Similarity=0.322 Sum_probs=98.5
Q ss_pred ccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEE
Q 010836 236 NIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRII 313 (499)
Q Consensus 236 ~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI 313 (499)
....+++|||+ +++.++.+++.|.+.+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++||
T Consensus 28 ~~~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~lhg~~~~~~r~~~~~~f~~--g~~~vlvaT~~~~~Gidi~~v~~Vi 104 (212)
T 3eaq_A 28 VASPDRAMVFTRTKAETEEIAQGLLRLGH-PAQALHGDLSQGERERVLGAFRQ--GEVRVLVATDVAARGLDIPQVDLVV 104 (212)
T ss_dssp HHCCSCEEEECSSHHHHHHHHHHHHHHTC-CEEEECSSSCHHHHHHHHHHHHS--SSCCEEEECTTTTCSSSCCCBSEEE
T ss_pred hCCCCeEEEEeCCHHHHHHHHHHHHHcCC-CEEEEECCCCHHHHHHHHHHHHC--CCCeEEEecChhhcCCCCccCcEEE
Confidence 34567888888 89999999999998876 89999999999999999999999 9999999999999999997 99999
Q ss_pred EcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 314 ~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
+++. |.+..+|+||+||+||.|.. |.|+.+.+..
T Consensus 105 ~~~~---------p~~~~~~~qr~GR~gR~g~~---g~~~~l~~~~ 138 (212)
T 3eaq_A 105 HYRL---------PDRAEAYQHRSGRTGRAGRG---GRVVLLYGPR 138 (212)
T ss_dssp ESSC---------CSSHHHHHHHHTTBCCCC-----BEEEEEECGG
T ss_pred ECCC---------CcCHHHHHHHhcccCCCCCC---CeEEEEEchh
Confidence 9999 77999999999999999977 8998887654
No 63
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.82 E-value=5.6e-20 Score=173.55 Aligned_cols=161 Identities=16% Similarity=0.072 Sum_probs=121.1
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH------------cCCCEEE
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE------------SSSSGIY 106 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~------------~~~~~l~ 106 (499)
.+++.+.+.+.+. ||..++++|. +++.+ ++++++++++|||||||++|+.++. .+++++|
T Consensus 35 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~--~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~li 107 (242)
T 3fe2_A 35 NFPANVMDVIARQ-----NFTEPTAIQAQGWPVA--LSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLV 107 (242)
T ss_dssp TCCHHHHHHHHTT-----TCCSCCHHHHHHHHHH--HHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEE
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEE
Confidence 4889999999988 9999999999 99998 4589999999999999999865543 2457899
Q ss_pred EccHHHHHHHHHHHHHhc----CCceeEeeCCeecc------cCCCceEEEceeecc--------ccCCccEEEEecCcc
Q 010836 107 CGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQM 168 (499)
Q Consensus 107 l~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~ 168 (499)
++||++|+.|+++.++++ ++.+..++|+.... ..+.+++|+||+.+. .+.+++++|+||||+
T Consensus 108 l~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~ 187 (242)
T 3fe2_A 108 LAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADR 187 (242)
T ss_dssp ECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHH
T ss_pred EeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHH
Confidence 999999999999888764 78888888865432 225789999996652 357899999999999
Q ss_pred cCCCCCChhHHHHHhccccccceEeecCCCc-hHHHHHHHH
Q 010836 169 LGCKTRGFSFTRALLGICANELHLCGDPAAV-PLIQQILQV 208 (499)
Q Consensus 169 ~~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~-~~~~~l~~~ 208 (499)
+.+..++..+...+ .......++++.+++. +.+.+++..
T Consensus 188 l~~~~~~~~~~~i~-~~~~~~~q~~~~SAT~~~~~~~~~~~ 227 (242)
T 3fe2_A 188 MLDMGFEPQIRKIV-DQIRPDRQTLMWSATWPKEVRQLAED 227 (242)
T ss_dssp HHHTTCHHHHHHHH-TTSCSSCEEEEEESCCCHHHHHHHHH
T ss_pred HhhhCcHHHHHHHH-HhCCccceEEEEEeecCHHHHHHHHH
Confidence 98653333334443 3334455666665555 345555543
No 64
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.81 E-value=1.6e-19 Score=161.68 Aligned_cols=116 Identities=22% Similarity=0.367 Sum_probs=95.1
Q ss_pred cccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEE
Q 010836 235 SNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRI 312 (499)
Q Consensus 235 ~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~V 312 (499)
.....+++|||+ +++.++.+++.|.+.+. .+..+||++++.+|..+++.|++ |+.+|||||+++++|+|+| +++|
T Consensus 30 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~~~g~~~~~~R~~~~~~f~~--g~~~vLvaT~~~~~Gid~~~~~~V 106 (175)
T 2rb4_A 30 GSITIGQAIIFCQTRRNAKWLTVEMIQDGH-QVSLLSGELTVEQRASIIQRFRD--GKEKVLITTNVCARGIDVKQVTIV 106 (175)
T ss_dssp TTSCCSEEEEECSCHHHHHHHHHHHHTTTC-CEEEECSSCCHHHHHHHHHHHHT--TSCSEEEECCSCCTTTCCTTEEEE
T ss_pred HhCCCCCEEEEECCHHHHHHHHHHHHHcCC-cEEEEeCCCCHHHHHHHHHHHHc--CCCeEEEEecchhcCCCcccCCEE
Confidence 334456677777 89999999999998876 89999999999999999999999 9999999999999999997 9999
Q ss_pred EEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 313 I~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
|+++.+.+.+. ..+..+|+||+||+||.|.. |.++.+...+
T Consensus 107 i~~d~p~~~~~---~~~~~~~~qr~GR~gR~g~~---g~~~~~~~~~ 147 (175)
T 2rb4_A 107 VNFDLPVKQGE---EPDYETYLHRIGRTGRFGKK---GLAFNMIEVD 147 (175)
T ss_dssp EESSCCC--CC---SCCHHHHHHHHCBC----CC---EEEEEEECGG
T ss_pred EEeCCCCCccc---cCCHHHHHHHhcccccCCCC---ceEEEEEccc
Confidence 99998421110 17899999999999999977 8887776544
No 65
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.81 E-value=1.9e-19 Score=159.42 Aligned_cols=124 Identities=19% Similarity=0.340 Sum_probs=99.8
Q ss_pred cccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEE
Q 010836 235 SNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRI 312 (499)
Q Consensus 235 ~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~V 312 (499)
.....++++||+ +++.++.+++.|.+.+. .+..+||++++.+|..+++.|++ |+.+|||||+++++|+|+| +++|
T Consensus 26 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~~~~~~~~~~r~~~~~~f~~--g~~~vlv~T~~~~~G~d~~~~~~V 102 (165)
T 1fuk_A 26 DSISVTQAVIFCNTRRKVEELTTKLRNDKF-TVSAIYSDLPQQERDTIMKEFRS--GSSRILISTDLLARGIDVQQVSLV 102 (165)
T ss_dssp HHTTCSCEEEEESSHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHT--TSCSEEEEEGGGTTTCCCCSCSEE
T ss_pred HhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CEEEEECCCCHHHHHHHHHHHHc--CCCEEEEEcChhhcCCCcccCCEE
Confidence 334567788887 89999999999998876 89999999999999999999999 9999999999999999997 9999
Q ss_pred EEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC-CHH---HHHhhhCCCCch
Q 010836 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE-DLP---LLHKSLLEPSPM 373 (499)
Q Consensus 313 I~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~-~~~---~~~~~~~~~~~~ 373 (499)
|+++. |.+..+|.||+||+||.|.. |.|+.+..+ +.. .+++.+....++
T Consensus 103 i~~~~---------p~~~~~~~qr~GR~gR~g~~---g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (165)
T 1fuk_A 103 INYDL---------PANKENYIHRIGRGGRFGRK---GVAINFVTNEDVGAMRELEKFYSTQIEE 155 (165)
T ss_dssp EESSC---------CSSGGGGGGSSCSCC--------CEEEEEEETTTHHHHHHHHHHSSCCCEE
T ss_pred EEeCC---------CCCHHHHHHHhcccccCCCC---ceEEEEEcchHHHHHHHHHHHHccCccc
Confidence 99998 77999999999999999976 777666544 333 333444444443
No 66
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.80 E-value=2.5e-19 Score=164.59 Aligned_cols=160 Identities=16% Similarity=0.060 Sum_probs=118.9
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEEEEccHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLR 111 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~-------~~~~l~l~P~r 111 (499)
.+++.+.+.++.. |+..|+++|. +++.+ ++++++++.+|||||||++++.++.. +.+++|++|++
T Consensus 9 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~--~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 81 (206)
T 1vec_A 9 CLKRELLMGIFEM-----GWEKPSPIQEESIPIA--LSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTR 81 (206)
T ss_dssp CCCHHHHHHHHTT-----TCCSCCHHHHHHHHHH--HTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCH
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--ccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcH
Confidence 4789999999988 9999999999 99988 56899999999999999998655542 34799999999
Q ss_pred HHHHHHHHHHHhc-----CCceeEeeCCeec------ccCCCceEEEceeecc--------ccCCccEEEEecCcccCCC
Q 010836 112 LLAWEVAKRLNKA-----NVSCDLITGQERE------EVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCK 172 (499)
Q Consensus 112 ~La~q~~~~l~~~-----g~~~~~~~g~~~~------~~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~ 172 (499)
+|+.|+++.+.++ +..+...+|+... ...+..++++|++.+. .+.+++++|+||||++.+.
T Consensus 82 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~ 161 (206)
T 1vec_A 82 ELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ 161 (206)
T ss_dssp HHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTST
T ss_pred HHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHhh
Confidence 9999999999864 5677777776432 1235789999996552 3478999999999999875
Q ss_pred CCChhHHHHHhccccccceEeecCCCc-hHHHHHHH
Q 010836 173 TRGFSFTRALLGICANELHLCGDPAAV-PLIQQILQ 207 (499)
Q Consensus 173 ~~g~~~~~~ll~l~~~~~~~~~~~~~~-~~~~~l~~ 207 (499)
.++..+...+..+. ...++++.+++. +.+.+++.
T Consensus 162 ~~~~~l~~i~~~~~-~~~~~l~~SAT~~~~~~~~~~ 196 (206)
T 1vec_A 162 DFVQIMEDIILTLP-KNRQILLYSATFPLSVQKFMN 196 (206)
T ss_dssp TTHHHHHHHHHHSC-TTCEEEEEESCCCHHHHHHHH
T ss_pred CcHHHHHHHHHhCC-ccceEEEEEeeCCHHHHHHHH
Confidence 44433444443333 344555555554 34444443
No 67
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.80 E-value=2.4e-19 Score=168.55 Aligned_cols=161 Identities=17% Similarity=0.104 Sum_probs=119.0
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-----------cCCCEEEE
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-----------SSSSGIYC 107 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~-----------~~~~~l~l 107 (499)
.+++.+.+.++.. |+..++++|. +++.+ ++++++++++|||||||++++.++. .+.+++|+
T Consensus 31 ~l~~~l~~~l~~~-----~~~~~~~~Q~~~i~~~--~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil 103 (236)
T 2pl3_A 31 PLSKKTLKGLQEA-----QYRLVTEIQKQTIGLA--LQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLII 103 (236)
T ss_dssp CCCHHHHHHHHHT-----TCCBCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEE
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEE
Confidence 4889999999988 9999999999 99988 5689999999999999999754432 24578999
Q ss_pred ccHHHHHHHHHHHHHhc----CCceeEeeCCeec-----ccCCCceEEEceeecc---------ccCCccEEEEecCccc
Q 010836 108 GPLRLLAWEVAKRLNKA----NVSCDLITGQERE-----EVDGAKHRAVTVEMAD---------VVSDYDCAVIDEIQML 169 (499)
Q Consensus 108 ~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~-----~~~~~~~iv~T~e~~~---------~l~~~~~iViDEah~~ 169 (499)
+|+++|+.|+++.++++ ++.+..++|+... ...+.+++++|++.+. .+.+++++|+||||++
T Consensus 104 ~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~ 183 (236)
T 2pl3_A 104 SPTRELAYQTFEVLRKVGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRI 183 (236)
T ss_dssp CSSHHHHHHHHHHHHHHTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHH
T ss_pred eCCHHHHHHHHHHHHHHhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHH
Confidence 99999999999999875 4677788876432 2246789999996551 2478999999999999
Q ss_pred CCCCCChhHHHHHhccccccceEeecCCCc-hHHHHHHHH
Q 010836 170 GCKTRGFSFTRALLGICANELHLCGDPAAV-PLIQQILQV 208 (499)
Q Consensus 170 ~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~-~~~~~l~~~ 208 (499)
.+..++..+...+..+. ...++++.+++. +.+.++...
T Consensus 184 ~~~~~~~~~~~i~~~~~-~~~~~l~~SAT~~~~~~~~~~~ 222 (236)
T 2pl3_A 184 LDMGFADTMNAVIENLP-KKRQTLLFSATQTKSVKDLARL 222 (236)
T ss_dssp HHTTTHHHHHHHHHTSC-TTSEEEEEESSCCHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHhCC-CCCeEEEEEeeCCHHHHHHHHH
Confidence 86533334444444443 344455555544 455566554
No 68
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.80 E-value=6.2e-20 Score=175.29 Aligned_cols=160 Identities=17% Similarity=0.098 Sum_probs=119.6
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-----------cCCCEEEE
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-----------SSSSGIYC 107 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~-----------~~~~~l~l 107 (499)
.+++.+.+.++.. ||..++++|. +++.+. .+++++++||||||||++|+.++. .+.+++|+
T Consensus 60 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil 132 (262)
T 3ly5_A 60 LVNENTLKAIKEM-----GFTNMTEIQHKSIRPLL--EGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLIL 132 (262)
T ss_dssp CCCHHHHHHHHHT-----TCCBCCHHHHHHHHHHH--HTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEE
T ss_pred ccCHHHHHHHHHC-----CCCCCCHHHHHHHHHHh--CCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEE
Confidence 3789999999988 9999999999 999984 489999999999999999865543 35679999
Q ss_pred ccHHHHHHHHHHHHHhc----CCceeEeeCCeecc------cCCCceEEEceeecc---------ccCCccEEEEecCcc
Q 010836 108 GPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD---------VVSDYDCAVIDEIQM 168 (499)
Q Consensus 108 ~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~---------~l~~~~~iViDEah~ 168 (499)
+||++|+.|+++.++++ +..+..++|+.... ..+.+++|+||+.+. .+.+++++||||||+
T Consensus 133 ~Pt~~La~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~ 212 (262)
T 3ly5_A 133 SPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADR 212 (262)
T ss_dssp CSSHHHHHHHHHHHHHHTTTCCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHH
T ss_pred eCCHHHHHHHHHHHHHHHhhcCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHH
Confidence 99999999999999864 56677777765432 125789999996552 247799999999999
Q ss_pred cCCCCCChhHHHHHhccccccceEeecCCCc-hHHHHHHH
Q 010836 169 LGCKTRGFSFTRALLGICANELHLCGDPAAV-PLIQQILQ 207 (499)
Q Consensus 169 ~~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~-~~~~~l~~ 207 (499)
+.+..++..+...+ .......++++.+++. +.+..+..
T Consensus 213 l~~~~~~~~l~~i~-~~~~~~~q~l~~SAT~~~~v~~~~~ 251 (262)
T 3ly5_A 213 ILDVGFEEELKQII-KLLPTRRQTMLFSATQTRKVEDLAR 251 (262)
T ss_dssp HHHTTCHHHHHHHH-HHSCSSSEEEEECSSCCHHHHHHHH
T ss_pred HhhhhHHHHHHHHH-HhCCCCCeEEEEEecCCHHHHHHHH
Confidence 98653333333333 3334445666666665 44555554
No 69
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.80 E-value=2e-19 Score=170.39 Aligned_cols=161 Identities=17% Similarity=0.147 Sum_probs=120.3
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEEEEccHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLR 111 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~-------~~~~l~l~P~r 111 (499)
.+++.+.+.++.. |+..++++|. +++.+ ++++++++++|||||||++++.++.. ..+++|++|++
T Consensus 49 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~i--~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr 121 (249)
T 3ber_A 49 GVTDVLCEACDQL-----GWTKPTKIQIEAIPLA--LQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTR 121 (249)
T ss_dssp TCCHHHHHHHHHT-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSH
T ss_pred CCCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--hCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCH
Confidence 4789999999988 9999999999 99988 56899999999999999998655432 34699999999
Q ss_pred HHHHHHHHHHHhc----CCceeEeeCCeecc------cCCCceEEEceeecc---------ccCCccEEEEecCcccCCC
Q 010836 112 LLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD---------VVSDYDCAVIDEIQMLGCK 172 (499)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~---------~l~~~~~iViDEah~~~~~ 172 (499)
+|+.|++++++++ ++.+..++|+.... ..+..++++|++.+. .+.+++++|+||||++.+.
T Consensus 122 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~ 201 (249)
T 3ber_A 122 ELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILNM 201 (249)
T ss_dssp HHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHT
T ss_pred HHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhcc
Confidence 9999999998864 78888888864432 246789999996551 2467999999999999865
Q ss_pred CCChhHHHHHhccccccceEeecCCCc-hHHHHHHHH
Q 010836 173 TRGFSFTRALLGICANELHLCGDPAAV-PLIQQILQV 208 (499)
Q Consensus 173 ~~g~~~~~~ll~l~~~~~~~~~~~~~~-~~~~~l~~~ 208 (499)
.++..+...+..+ ....++++.+++. +.+.+++..
T Consensus 202 ~~~~~l~~i~~~~-~~~~~~l~~SAT~~~~v~~~~~~ 237 (249)
T 3ber_A 202 DFETEVDKILKVI-PRDRKTFLFSATMTKKVQKLQRA 237 (249)
T ss_dssp TCHHHHHHHHHSS-CSSSEEEEEESSCCHHHHHHHHH
T ss_pred ChHHHHHHHHHhC-CCCCeEEEEeccCCHHHHHHHHH
Confidence 3333444444444 3344555555554 345555543
No 70
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.80 E-value=1.4e-19 Score=161.44 Aligned_cols=109 Identities=19% Similarity=0.306 Sum_probs=98.9
Q ss_pred cccCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEE
Q 010836 235 SNIQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRI 312 (499)
Q Consensus 235 ~~~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~V 312 (499)
.....+++|||+ +++.++.+++.|.+.+. .+..+||++++.+|..+++.|++ |+.+|||||+++++|+|+| +++|
T Consensus 27 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~-~~~~~hg~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gldi~~~~~V 103 (172)
T 1t5i_A 27 DVLEFNQVVIFVKSVQRCIALAQLLVEQNF-PAIAIHRGMPQEERLSRYQQFKD--FQRRILVATNLFGRGMDIERVNIA 103 (172)
T ss_dssp HHSCCSSEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTSCHHHHHHHHHHHHT--TSCSEEEESSCCSTTCCGGGCSEE
T ss_pred HhCCCCcEEEEECCHHHHHHHHHHHHhcCC-CEEEEECCCCHHHHHHHHHHHHC--CCCcEEEECCchhcCcchhhCCEE
Confidence 344556788888 89999999999998876 89999999999999999999999 9999999999999999997 9999
Q ss_pred EEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC
Q 010836 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 313 I~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~ 358 (499)
|+++. |.+..+|+||+||+||.|.. |.++.+...
T Consensus 104 i~~d~---------p~~~~~~~qr~GR~~R~g~~---g~~~~~~~~ 137 (172)
T 1t5i_A 104 FNYDM---------PEDSDTYLHRVARAGRFGTK---GLAITFVSD 137 (172)
T ss_dssp EESSC---------CSSHHHHHHHHHHHTGGGCC---CEEEEEECS
T ss_pred EEECC---------CCCHHHHHHHhcccccCCCC---cEEEEEEcC
Confidence 99998 77999999999999999987 888777654
No 71
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.80 E-value=4.3e-19 Score=172.71 Aligned_cols=163 Identities=12% Similarity=0.081 Sum_probs=119.3
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEEEEccHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLR 111 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~-------~~~~l~l~P~r 111 (499)
.+++.+.+.+... ||..|+++|. ++|.+....+++++++||||||||++|+.+++. ..++||++|||
T Consensus 98 ~l~~~l~~~l~~~-----g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~Ptr 172 (300)
T 3fmo_B 98 RLKPQLLQGVYAM-----GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTY 172 (300)
T ss_dssp TCCHHHHHHHHHT-----TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHc-----CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcH
Confidence 5889999999988 9999999999 999984322499999999999999998765542 23789999999
Q ss_pred HHHHHHHHHHHhc-----CCceeEeeCCeecc---cCCCceEEEceeec-c--------ccCCccEEEEecCcccCCCCC
Q 010836 112 LLAWEVAKRLNKA-----NVSCDLITGQEREE---VDGAKHRAVTVEMA-D--------VVSDYDCAVIDEIQMLGCKTR 174 (499)
Q Consensus 112 ~La~q~~~~l~~~-----g~~~~~~~g~~~~~---~~~~~~iv~T~e~~-~--------~l~~~~~iViDEah~~~~~~~ 174 (499)
+||.|+++.+.++ ++.+....|+.... ..+..++|+||+.+ + .+.+++++||||||++.+. .
T Consensus 173 eLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~-~ 251 (300)
T 3fmo_B 173 ELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIAT-Q 251 (300)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHS-T
T ss_pred HHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhc-c
Confidence 9999999998864 45666666654322 23567999999654 1 2478999999999999852 2
Q ss_pred Chh-HHHHHhccccccceEeecCCCc-hHHHHHHHH
Q 010836 175 GFS-FTRALLGICANELHLCGDPAAV-PLIQQILQV 208 (499)
Q Consensus 175 g~~-~~~~ll~l~~~~~~~~~~~~~~-~~~~~l~~~ 208 (499)
|+. ....++.......+++..+++. +.+..++..
T Consensus 252 ~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~ 287 (300)
T 3fmo_B 252 GHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQK 287 (300)
T ss_dssp THHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHH
T ss_pred CcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHH
Confidence 443 2344455545556666666555 445555543
No 72
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.79 E-value=1.6e-19 Score=170.63 Aligned_cols=162 Identities=17% Similarity=0.128 Sum_probs=118.0
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH--------cCCCEEEEccH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE--------SSSSGIYCGPL 110 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~--------~~~~~l~l~P~ 110 (499)
.+++.+.+.+.+. ||..|+++|. +++.+ ++++++++.+|||||||++|+.++. .+.+++|++|+
T Consensus 35 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~--~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt 107 (245)
T 3dkp_A 35 KINSRLLQNILDA-----GFQMPTPIQMQAIPVM--LHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPT 107 (245)
T ss_dssp CCCHHHHHHHHHT-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSS
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCC
Confidence 6889999999988 9999999999 99998 5589999999999999999865553 23478999999
Q ss_pred HHHHHHHHHHHHhc----CCceeEeeCCeec-------ccCCCceEEEceeecc----------ccCCccEEEEecCccc
Q 010836 111 RLLAWEVAKRLNKA----NVSCDLITGQERE-------EVDGAKHRAVTVEMAD----------VVSDYDCAVIDEIQML 169 (499)
Q Consensus 111 r~La~q~~~~l~~~----g~~~~~~~g~~~~-------~~~~~~~iv~T~e~~~----------~l~~~~~iViDEah~~ 169 (499)
++|+.|+++++.++ +..+..++|+... ...+.+++++||+.+. .+.+++++|+||||++
T Consensus 108 ~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~ 187 (245)
T 3dkp_A 108 RELASQIHRELIKISEGTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKL 187 (245)
T ss_dssp HHHHHHHHHHHHHHTTTSCCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHH
T ss_pred HHHHHHHHHHHHHHhcccCceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHh
Confidence 99999999999875 5666666654221 1235689999996552 2467999999999999
Q ss_pred CCCC-CChh--HHHHHhccccccceEeecCCCc-hHHHHHHHH
Q 010836 170 GCKT-RGFS--FTRALLGICANELHLCGDPAAV-PLIQQILQV 208 (499)
Q Consensus 170 ~~~~-~g~~--~~~~ll~l~~~~~~~~~~~~~~-~~~~~l~~~ 208 (499)
.+.. .++. +...+..+.....++++.+++. +.+.+++..
T Consensus 188 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~ 230 (245)
T 3dkp_A 188 FEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCKL 230 (245)
T ss_dssp HHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHH
Confidence 7532 2332 2233333444455666666655 455555544
No 73
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.79 E-value=3e-19 Score=161.86 Aligned_cols=105 Identities=22% Similarity=0.320 Sum_probs=93.3
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcc
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 316 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~ 316 (499)
.+.+|||+ +++.++.+++.|...+. .+..+||++++++|..+++.|++ |+.+|||||+++++|+|+| +++||+++
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g~-~~~~lhg~~~~~~R~~~l~~F~~--g~~~vLvaT~~~~~Gldi~~v~~VI~~d 130 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKGV-EAVAIHGGKDQEERTKAIEAFRE--GKKDVLVATDVASKGLDFPAIQHVINYD 130 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHTC-CEEEECTTSCHHHHHHHHHHHHH--TSCSEEEECHHHHTTCCCCCCSEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCC-cEEEEeCCCCHHHHHHHHHHHhc--CCCEEEEEcCchhcCCCcccCCEEEEeC
Confidence 45677777 89999999999998876 89999999999999999999999 9999999999999999997 99999999
Q ss_pred cccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCC
Q 010836 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSE 358 (499)
Q Consensus 317 ~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~ 358 (499)
. |.+..+|+||+||+||.|.. |.++.+...
T Consensus 131 ~---------p~~~~~~~qr~GR~gR~g~~---g~~i~l~~~ 160 (191)
T 2p6n_A 131 M---------PEEIENYVHRIGRTGCSGNT---GIATTFINK 160 (191)
T ss_dssp C---------CSSHHHHHHHHTTSCC---C---CEEEEEECT
T ss_pred C---------CCCHHHHHHHhCccccCCCC---cEEEEEEcC
Confidence 8 77999999999999999987 777777654
No 74
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.79 E-value=5.5e-19 Score=162.39 Aligned_cols=161 Identities=20% Similarity=0.136 Sum_probs=119.4
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----------cCCCEEEEc
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----------SSSSGIYCG 108 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~----------~~~~~l~l~ 108 (499)
.+++.+.+.++.. |+..|+++|. +++.+ ++++++++.+|||||||++++.++. .+.+++|++
T Consensus 7 ~l~~~l~~~l~~~-----~~~~~~~~Q~~~i~~~--~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~ 79 (207)
T 2gxq_A 7 PLKPEILEALHGR-----GLTTPTPIQAAALPLA--LEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLT 79 (207)
T ss_dssp CCCHHHHHHHHHT-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEEC
T ss_pred CCCHHHHHHHHHc-----CCCCCCHHHHHHHHHH--cCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEE
Confidence 4789999999988 9999999999 99988 5589999999999999999765543 235789999
Q ss_pred cHHHHHHHHHHHHHhc--CCceeEeeCCeecc------cCCCceEEEceeecc--------ccCCccEEEEecCcccCCC
Q 010836 109 PLRLLAWEVAKRLNKA--NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCK 172 (499)
Q Consensus 109 P~r~La~q~~~~l~~~--g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~ 172 (499)
|+++|+.|++++++++ +.++..++|+.... ..+.+++++|++.+. .+.+++++|+||||++.+.
T Consensus 80 P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~ 159 (207)
T 2gxq_A 80 PTRELALQVASELTAVAPHLKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSM 159 (207)
T ss_dssp SSHHHHHHHHHHHHHHCTTSCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhcceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhcc
Confidence 9999999999999976 35677777764321 135789999996552 2478999999999998765
Q ss_pred CCChhHHHHHhccccccceEeecCCCch-HHHHHHHH
Q 010836 173 TRGFSFTRALLGICANELHLCGDPAAVP-LIQQILQV 208 (499)
Q Consensus 173 ~~g~~~~~~ll~l~~~~~~~~~~~~~~~-~~~~l~~~ 208 (499)
.++......+..+ ....++++.+++.+ .+.++...
T Consensus 160 ~~~~~~~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~~ 195 (207)
T 2gxq_A 160 GFEEEVEALLSAT-PPSRQTLLFSATLPSWAKRLAER 195 (207)
T ss_dssp TCHHHHHHHHHTS-CTTSEEEEECSSCCHHHHHHHHH
T ss_pred chHHHHHHHHHhC-CccCeEEEEEEecCHHHHHHHHH
Confidence 4333344443333 34455566666553 45555544
No 75
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.79 E-value=2e-19 Score=167.11 Aligned_cols=160 Identities=16% Similarity=0.099 Sum_probs=116.7
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEEEEccHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLR 111 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~-------~~~~l~l~P~r 111 (499)
.+++.+.+.++.. |+..++++|+ +++.+. +++++++++|||||||++++.++.. +.+++|++|++
T Consensus 10 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~~--~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 82 (219)
T 1q0u_A 10 PFQPFIIEAIKTL-----RFYKPTEIQERIIPGAL--RGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTR 82 (219)
T ss_dssp CCCHHHHHHHHHT-----TCCSCCHHHHHHHHHHH--HTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHHh--CCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcH
Confidence 4789999999988 9999999999 999884 4899999999999999998655532 35789999999
Q ss_pred HHHHHHHHHHHhc--------CCceeEeeCCeecc------cCCCceEEEceeecc--------ccCCccEEEEecCccc
Q 010836 112 LLAWEVAKRLNKA--------NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQML 169 (499)
Q Consensus 112 ~La~q~~~~l~~~--------g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~ 169 (499)
+|+.|+++.+.++ ++.+..++|+.... ..+.+++++||+.+. .+.+++++|+||||++
T Consensus 83 ~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~ 162 (219)
T 1q0u_A 83 ELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLM 162 (219)
T ss_dssp HHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHH
Confidence 9999999988754 56777777764321 125679999996552 2478999999999999
Q ss_pred CCCCCChhHHHHHhccccccceEeecCCCc-hHHHHHHH
Q 010836 170 GCKTRGFSFTRALLGICANELHLCGDPAAV-PLIQQILQ 207 (499)
Q Consensus 170 ~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~-~~~~~l~~ 207 (499)
.+..++..+...+..+ ....++++.+++. +.+.+++.
T Consensus 163 ~~~~~~~~l~~i~~~~-~~~~~~l~~SAT~~~~~~~~~~ 200 (219)
T 1q0u_A 163 LDMGFITDVDQIAARM-PKDLQMLVFSATIPEKLKPFLK 200 (219)
T ss_dssp HHTTCHHHHHHHHHTS-CTTCEEEEEESCCCGGGHHHHH
T ss_pred hhhChHHHHHHHHHhC-CcccEEEEEecCCCHHHHHHHH
Confidence 8653333333333333 3344555555544 33444443
No 76
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.79 E-value=2.5e-18 Score=184.45 Aligned_cols=110 Identities=18% Similarity=0.197 Sum_probs=96.7
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEcc
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFST 316 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~~ 316 (499)
.++++||+ |+..++.+++.|.+.+. .+..+||++++.+|..+++.|++ |+.+|||||+++++|+|+| +++||+++
T Consensus 445 ~~~vlVf~~t~~~ae~L~~~L~~~gi-~~~~lh~~~~~~~R~~~l~~f~~--g~~~VLVaT~~l~~GlDip~v~lVi~~d 521 (661)
T 2d7d_A 445 NERVLVTTLTKKMSEDLTDYLKEIGI-KVNYLHSEIKTLERIEIIRDLRL--GKYDVLVGINLLREGLDIPEVSLVAILD 521 (661)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHTTC-CEEEECTTCCHHHHHHHHHHHHH--TSCSEEEESCCCSTTCCCTTEEEEEETT
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCC-CeEEEeCCCCHHHHHHHHHHHhc--CCeEEEEecchhhCCcccCCCCEEEEeC
Confidence 44567776 89999999999999876 89999999999999999999999 9999999999999999997 99999999
Q ss_pred cccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 317 MKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 317 ~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
..+|.- |.+..+|+||+|||||.+. |.|+.+.++.
T Consensus 522 ~d~~G~----p~s~~~~iQr~GRagR~~~----G~~i~~~~~~ 556 (661)
T 2d7d_A 522 ADKEGF----LRSERSLIQTIGRAARNAE----GRVIMYADKI 556 (661)
T ss_dssp TTCCTT----TTSHHHHHHHHHTTTTSTT----CEEEEECSSC
T ss_pred cccccC----CCCHHHHHHHhCcccCCCC----CEEEEEEeCC
Confidence 765431 6689999999999999843 8888887664
No 77
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.79 E-value=3.8e-19 Score=166.51 Aligned_cols=159 Identities=11% Similarity=0.087 Sum_probs=117.2
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEEEEccHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLR 111 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~-------~~~~l~l~P~r 111 (499)
.+++.+.+.++.. ||..++++|+ +++.+ ++++++++++|||||||++++.++.. +.+++|++|++
T Consensus 30 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~--~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~ 102 (230)
T 2oxc_A 30 LLSRPVLEGLRAA-----GFERPSPVQLKAIPLG--RCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTR 102 (230)
T ss_dssp TCCHHHHHHHHHT-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCH
Confidence 4789999999988 9999999999 99988 55899999999999999997555431 35889999999
Q ss_pred HHHHHHHHHHHhc-----CCceeEeeCCeec-----ccCCCceEEEceeecc--------ccCCccEEEEecCcccCCCC
Q 010836 112 LLAWEVAKRLNKA-----NVSCDLITGQERE-----EVDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKT 173 (499)
Q Consensus 112 ~La~q~~~~l~~~-----g~~~~~~~g~~~~-----~~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~ 173 (499)
+|+.|++++++++ ++++..++|+... ...+.+++++|++.+. .+.+++++|+||||++.+..
T Consensus 103 ~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~ 182 (230)
T 2oxc_A 103 EIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEEG 182 (230)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHSTT
T ss_pred HHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcCc
Confidence 9999999999865 5677888886432 2346789999997552 24678999999999998642
Q ss_pred -CChhHHHHHhccccccceEeecCCCch-HHHHHH
Q 010836 174 -RGFSFTRALLGICANELHLCGDPAAVP-LIQQIL 206 (499)
Q Consensus 174 -~g~~~~~~ll~l~~~~~~~~~~~~~~~-~~~~l~ 206 (499)
++..+... +.......++++.+++.+ .+.+++
T Consensus 183 ~~~~~~~~i-~~~~~~~~~~l~lSAT~~~~~~~~~ 216 (230)
T 2oxc_A 183 SFQEQINWI-YSSLPASKQMLAVSATYPEFLANAL 216 (230)
T ss_dssp SSHHHHHHH-HHHSCSSCEEEEEESCCCHHHHHHH
T ss_pred chHHHHHHH-HHhCCCCCeEEEEEeccCHHHHHHH
Confidence 22222333 333333455566555543 344444
No 78
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.79 E-value=2.6e-19 Score=173.24 Aligned_cols=109 Identities=21% Similarity=0.322 Sum_probs=95.3
Q ss_pred cCCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEE
Q 010836 237 IQTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIF 314 (499)
Q Consensus 237 ~~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~ 314 (499)
...+++|||+ +++.++.+++.|.+.+. .+..+||+|++.+|..+++.|++ |+.+|||||+++++|+|+| +++||+
T Consensus 26 ~~~~~~LVF~~t~~~~~~l~~~L~~~g~-~~~~lhg~l~~~~r~~~~~~f~~--g~~~vLVaT~va~~Gidi~~v~~VI~ 102 (300)
T 3i32_A 26 ASPDRAMVFTRTKAETEEIAQGLLRLGH-PAQALHGDMSQGERERVMGAFRQ--GEVRVLVATDVAARGLDIPQVDLVVH 102 (300)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHTTTC-CEEEECSCCCTHHHHHHHHHHHH--TSCCEEEECSTTTCSTTCCCCSEEEE
T ss_pred cCCCCEEEEECCHHHHHHHHHHHHhCCC-CEEEEeCCCCHHHHHHHHHHhhc--CCceEEEEechhhcCccccceeEEEE
Confidence 3567888888 89999999999988876 89999999999999999999999 9999999999999999997 999999
Q ss_pred cccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCCH
Q 010836 315 STMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL 360 (499)
Q Consensus 315 ~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~ 360 (499)
++. |.+..+|+||+||+||.|.. |.|+.+++...
T Consensus 103 ~d~---------p~s~~~y~Qr~GRagR~g~~---G~~i~l~~~~e 136 (300)
T 3i32_A 103 YRM---------PDRAEAYQHRSGRTGRAGRG---GRVVLLYGPRE 136 (300)
T ss_dssp SSC---------CSSTTHHHHHHTCCC--------CEEEEEECSST
T ss_pred cCC---------CCCHHHHHHHccCcCcCCCC---ceEEEEeChHH
Confidence 998 77999999999999999987 89888876553
No 79
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.78 E-value=6.7e-19 Score=164.02 Aligned_cols=160 Identities=11% Similarity=0.020 Sum_probs=116.2
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH-------cCCCEEEEccHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE-------SSSSGIYCGPLR 111 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~-------~~~~~l~l~P~r 111 (499)
.+++.+.+.++.. |+..++++|. +++.+ ++++++++++|||||||++++.++. .+.+++|++|++
T Consensus 20 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~--~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~ 92 (224)
T 1qde_A 20 ELDENLLRGVFGY-----GFEEPSAIQQRAIMPI--IEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTR 92 (224)
T ss_dssp TCCHHHHHHHHHH-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHC-----CCCCCcHHHHHHHHHH--hcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCH
Confidence 4889999999888 9999999999 99988 5689999999999999999755543 235899999999
Q ss_pred HHHHHHHHHHHhc----CCceeEeeCCeecc-----cCCCceEEEceeecc--------ccCCccEEEEecCcccCCCCC
Q 010836 112 LLAWEVAKRLNKA----NVSCDLITGQEREE-----VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCKTR 174 (499)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~g~~~~~-----~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~~~ 174 (499)
+|+.|+++.+.++ ++.+..++|+.... ..+.+++++|++.+. .+.+++++|+||||++.+..+
T Consensus 93 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~ 172 (224)
T 1qde_A 93 ELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSSGF 172 (224)
T ss_dssp HHHHHHHHHHHHHTTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcccCceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhhhh
Confidence 9999999998864 67777777764322 234789999996642 247799999999999886533
Q ss_pred ChhHHHHHhccccccceEeecCCCc-hHHHHHHH
Q 010836 175 GFSFTRALLGICANELHLCGDPAAV-PLIQQILQ 207 (499)
Q Consensus 175 g~~~~~~ll~l~~~~~~~~~~~~~~-~~~~~l~~ 207 (499)
+..+...+..+ ....++++.+++. +.+.+++.
T Consensus 173 ~~~l~~i~~~~-~~~~~~i~lSAT~~~~~~~~~~ 205 (224)
T 1qde_A 173 KEQIYQIFTLL-PPTTQVVLLSATMPNDVLEVTT 205 (224)
T ss_dssp HHHHHHHHHHS-CTTCEEEEEESSCCHHHHHHHH
T ss_pred HHHHHHHHHhC-CccCeEEEEEeecCHHHHHHHH
Confidence 33333333333 3445566655554 33445544
No 80
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.78 E-value=4.5e-19 Score=166.81 Aligned_cols=160 Identities=10% Similarity=0.029 Sum_probs=115.3
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEEEEccHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLR 111 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~-------~~~~l~l~P~r 111 (499)
.+++.+.+.+... ||..|+++|. +++.+ ++++++++++|||||||++++.++.. +.+++|++|++
T Consensus 36 ~l~~~l~~~l~~~-----g~~~~~~~Q~~ai~~i--~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~ 108 (237)
T 3bor_A 36 NLKESLLRGIYAY-----GFEKPSAIQQRAIIPC--IKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTR 108 (237)
T ss_dssp CCCHHHHHHHHHH-----TCCSCCHHHHHHHHHH--HTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSH
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcH
Confidence 4889999999887 9999999999 99988 56899999999999999998665542 35899999999
Q ss_pred HHHHHHHHHHHhc----CCceeEeeCCeeccc-------CCCceEEEceeecc--------ccCCccEEEEecCcccCCC
Q 010836 112 LLAWEVAKRLNKA----NVSCDLITGQEREEV-------DGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGCK 172 (499)
Q Consensus 112 ~La~q~~~~l~~~----g~~~~~~~g~~~~~~-------~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~~ 172 (499)
+|+.|+++.++++ +..+...+|+..... ....++++||+.+. .+.+++++|+||||++.+.
T Consensus 109 ~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~ 188 (237)
T 3bor_A 109 ELAQQIQKVILALGDYMGATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR 188 (237)
T ss_dssp HHHHHHHHHHHHHTTTTTCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhcCceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhcc
Confidence 9999999999865 466666666543221 12688999986542 2467999999999998755
Q ss_pred CCChhHHHHHhccccccceEeecCCCc-hHHHHHHH
Q 010836 173 TRGFSFTRALLGICANELHLCGDPAAV-PLIQQILQ 207 (499)
Q Consensus 173 ~~g~~~~~~ll~l~~~~~~~~~~~~~~-~~~~~l~~ 207 (499)
.++......+..+ ....++++.+++. +.+.+++.
T Consensus 189 ~~~~~l~~i~~~~-~~~~~~i~~SAT~~~~~~~~~~ 223 (237)
T 3bor_A 189 GFKDQIYEIFQKL-NTSIQVVLLSATMPTDVLEVTK 223 (237)
T ss_dssp TCHHHHHHHHHHS-CTTCEEEEECSSCCHHHHHHHH
T ss_pred CcHHHHHHHHHhC-CCCCeEEEEEEecCHHHHHHHH
Confidence 3333333333333 3455666666655 34455554
No 81
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.78 E-value=7.1e-19 Score=158.68 Aligned_cols=107 Identities=21% Similarity=0.341 Sum_probs=83.7
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEc
Q 010836 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFS 315 (499)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~ 315 (499)
..+++|||+ +++.++.+++.|...+. .+..+||++++.+|..+++.|++ |+.+|||||+++++|+|+| +++||++
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g~-~~~~lhg~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gldi~~~~~VI~~ 121 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEGY-ACTSIHGDRSQRDREEALHQFRS--GKSPILVATAVAARGLDISNVKHVINF 121 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTTC-CEEEEC--------CHHHHHHHH--TSSSEEEEEC------CCCSBSEEEES
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEeCCCCHHHHHHHHHHHHc--CCCeEEEEcChhhcCCCcccCCEEEEe
Confidence 355677777 89999999999998876 89999999999999999999999 9999999999999999997 9999999
Q ss_pred ccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 316 ~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
+. |.+..+|.||+||+||.|.. |.++.+..+.
T Consensus 122 d~---------p~s~~~~~Qr~GR~~R~g~~---g~~~~~~~~~ 153 (185)
T 2jgn_A 122 DL---------PSDIEEYVHRIGRTGRVGNL---GLATSFFNER 153 (185)
T ss_dssp SC---------CSSHHHHHHHHTTBCCTTSC---EEEEEEECGG
T ss_pred CC---------CCCHHHHHHHccccCCCCCC---cEEEEEEchh
Confidence 98 77999999999999999987 8888776543
No 82
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.77 E-value=9.3e-19 Score=166.29 Aligned_cols=162 Identities=16% Similarity=0.068 Sum_probs=118.0
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc----------------CC
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES----------------SS 102 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~----------------~~ 102 (499)
.+++.+.+.++.. |+..|+++|. +++.+ ++++++++++|||||||++++.++.. +.
T Consensus 29 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~i--~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~ 101 (253)
T 1wrb_A 29 KLDPTIRNNILLA-----SYQRPTPIQKNAIPAI--LEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYP 101 (253)
T ss_dssp SCCCSTTTTTTTT-----TCCSCCHHHHHHHHHH--HTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCC
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCc
Confidence 4778888888887 9999999999 99988 56899999999999999997554431 24
Q ss_pred CEEEEccHHHHHHHHHHHHHhc----CCceeEeeCCeecc------cCCCceEEEceeecc--------ccCCccEEEEe
Q 010836 103 SGIYCGPLRLLAWEVAKRLNKA----NVSCDLITGQEREE------VDGAKHRAVTVEMAD--------VVSDYDCAVID 164 (499)
Q Consensus 103 ~~l~l~P~r~La~q~~~~l~~~----g~~~~~~~g~~~~~------~~~~~~iv~T~e~~~--------~l~~~~~iViD 164 (499)
+++|++|+++|+.|++++++++ ++.+..++|+.... ..+.+++++||+.+. .+.+++++|+|
T Consensus 102 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViD 181 (253)
T 1wrb_A 102 KCLILAPTRELAIQILSESQKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLD 181 (253)
T ss_dssp SEEEECSSHHHHHHHHHHHHHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEE
T ss_pred eEEEEECCHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEe
Confidence 8999999999999999998864 46677777754321 235789999996652 35788999999
Q ss_pred cCcccCCCCCChhHHHHHhc--ccc-ccceEeecCCCc-hHHHHHHHH
Q 010836 165 EIQMLGCKTRGFSFTRALLG--ICA-NELHLCGDPAAV-PLIQQILQV 208 (499)
Q Consensus 165 Eah~~~~~~~g~~~~~~ll~--l~~-~~~~~~~~~~~~-~~~~~l~~~ 208 (499)
|||++.+..++..+...+.. +.. ...++++.+++. +.+.+++..
T Consensus 182 Eah~~~~~~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~~~~~ 229 (253)
T 1wrb_A 182 EADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAAD 229 (253)
T ss_dssp THHHHHHTTCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHHHHHH
T ss_pred CHHHHHhCchHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHHHHHH
Confidence 99999865444444444442 221 144555555554 445555543
No 83
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.77 E-value=4.4e-19 Score=164.81 Aligned_cols=160 Identities=13% Similarity=0.074 Sum_probs=117.5
Q ss_pred CCcHHHHhhhccCCCccccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-------CCCEEEEccHH
Q 010836 40 SVDVIIRSYCSGSGMKKFDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-------SSSGIYCGPLR 111 (499)
Q Consensus 40 ~l~~~l~~~l~~~~~~~~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~-------~~~~l~l~P~r 111 (499)
.+++.+.+.+... |+..|+++|. +++.+ ++++++++++|||||||++++.++.. ..+++|++|++
T Consensus 20 ~l~~~l~~~l~~~-----g~~~~~~~Q~~~i~~~--~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~ 92 (220)
T 1t6n_A 20 LLKPELLRAIVDC-----GFEHPSEVQHECIPQA--ILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTR 92 (220)
T ss_dssp CCCHHHHHHHHHT-----TCCCCCHHHHHHHHHH--HTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCH
T ss_pred CCCHHHHHHHHHC-----CCCCCCHHHHHHHHHH--hCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCH
Confidence 4889999999988 9999999999 99988 55899999999999999998665542 23799999999
Q ss_pred HHHHHHHHHHHhc-----CCceeEeeCCeecc-------cCCCceEEEceeecc--------ccCCccEEEEecCcccCC
Q 010836 112 LLAWEVAKRLNKA-----NVSCDLITGQEREE-------VDGAKHRAVTVEMAD--------VVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 112 ~La~q~~~~l~~~-----g~~~~~~~g~~~~~-------~~~~~~iv~T~e~~~--------~l~~~~~iViDEah~~~~ 171 (499)
+|+.|+++.++++ ++++..++|+.... .....++++|++.+. .+.+++++|+||||++.+
T Consensus 93 ~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~ 172 (220)
T 1t6n_A 93 ELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 172 (220)
T ss_dssp HHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHS
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhc
Confidence 9999999998875 67888888864321 124589999996552 357899999999999975
Q ss_pred CCCChh-HHHHHhccccccceEeecCCCch-HHHHHHH
Q 010836 172 KTRGFS-FTRALLGICANELHLCGDPAAVP-LIQQILQ 207 (499)
Q Consensus 172 ~~~g~~-~~~~ll~l~~~~~~~~~~~~~~~-~~~~l~~ 207 (499)
. .++. ....++.......++++.+++.+ .+.+++.
T Consensus 173 ~-~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~ 209 (220)
T 1t6n_A 173 Q-LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCR 209 (220)
T ss_dssp S-HHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHH
T ss_pred c-cCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHH
Confidence 2 1221 12223333344555666555543 3444443
No 84
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.60 E-value=1e-19 Score=161.98 Aligned_cols=107 Identities=21% Similarity=0.312 Sum_probs=96.1
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccccc-ccEEEEc
Q 010836 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLNLN-ISRIIFS 315 (499)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gidip-v~~VI~~ 315 (499)
..+++|||+ +++.++.+++.|++.+. .+..+||++++.+|..+++.|++ |+.+|||||+++++|+|+| +++||++
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~~~-~~~~~~g~~~~~~r~~~~~~f~~--g~~~vLvaT~~~~~Gid~~~~~~Vi~~ 105 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREAGI-NNCYLEGEMVQGKRNEAIKRLTE--GRVNVLVATDVAARGIDIPDVSHVFNF 105 (170)
Confidence 445677777 89999999999988766 89999999999999999999999 9999999999999999997 9999999
Q ss_pred ccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 316 TMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 316 ~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
+. |.+..+|+||+||+||.|.. |.++.+....
T Consensus 106 ~~---------p~~~~~~~qr~GR~~R~g~~---g~~~~~~~~~ 137 (170)
T 2yjt_D 106 DM---------PRSGDTYLHRIGRTARAGRK---GTAISLVEAH 137 (170)
Confidence 98 77999999999999999977 8877766543
No 85
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.66 E-value=1.6e-15 Score=161.15 Aligned_cols=109 Identities=18% Similarity=0.062 Sum_probs=87.6
Q ss_pred ccCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHh----cCCc
Q 010836 57 FDFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNK----ANVS 127 (499)
Q Consensus 57 ~~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l----~~~~~~l~l~P~r~La~q~~~~l~~----~g~~ 127 (499)
.|+ .++++|. ++|.+ ++|+ +..+.||||||+++..++ +.+..+++++||++||.|.++.+.. +|++
T Consensus 76 lG~-~Pt~VQ~~~ip~L--lqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLs 150 (997)
T 2ipc_A 76 LGM-RHFDVQLIGGAVL--HEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLS 150 (997)
T ss_dssp TCC-CCCHHHHHHHHHH--HTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred hCC-CCcHHHHhhcccc--cCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCe
Confidence 488 9999999 99988 5677 999999999999974444 3456789999999999999988875 4899
Q ss_pred eeEeeCCeecc----cCCCceEEEceeec--c-------------ccC---CccEEEEecCcccC
Q 010836 128 CDLITGQEREE----VDGAKHRAVTVEMA--D-------------VVS---DYDCAVIDEIQMLG 170 (499)
Q Consensus 128 ~~~~~g~~~~~----~~~~~~iv~T~e~~--~-------------~l~---~~~~iViDEah~~~ 170 (499)
+++++|+.... ....+++++|+..+ + .++ ++.++||||+|.++
T Consensus 151 v~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 151 VGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp EEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred EEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 99999875432 22578999998443 1 135 79999999999986
No 86
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.63 E-value=4.8e-16 Score=143.46 Aligned_cols=112 Identities=20% Similarity=0.095 Sum_probs=82.4
Q ss_pred cCCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc----------CCCEEEEccHHHHHHH-HHHHHHhc-
Q 010836 58 DFTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES----------SSSGIYCGPLRLLAWE-VAKRLNKA- 124 (499)
Q Consensus 58 ~~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~----------~~~~l~l~P~r~La~q-~~~~l~~~- 124 (499)
....|++.|. +++.+ ++++++++.+|||+|||++++..+.. .++++|++|+++|+.| +.+.+.++
T Consensus 30 ~~~~l~~~Q~~~i~~~--~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~~ 107 (216)
T 3b6e_A 30 PELQLRPYQMEVAQPA--LEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 107 (216)
T ss_dssp CCCCCCHHHHHHHHHH--HTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHHH
T ss_pred CCCCchHHHHHHHHHH--hcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHHh
Confidence 5668999999 99988 55899999999999999998655542 5789999999999999 66666653
Q ss_pred --CCceeEeeCCeeccc------CCCceEEEceeec--------------cccCCccEEEEecCcccCC
Q 010836 125 --NVSCDLITGQEREEV------DGAKHRAVTVEMA--------------DVVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 125 --g~~~~~~~g~~~~~~------~~~~~iv~T~e~~--------------~~l~~~~~iViDEah~~~~ 171 (499)
+..+..++|+..... .+..++++|++.+ ..+.+++++||||||++.+
T Consensus 108 ~~~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~ 176 (216)
T 3b6e_A 108 KKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK 176 (216)
T ss_dssp TTTSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-----
T ss_pred ccCceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc
Confidence 677888877654322 2478999999665 2247889999999999974
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.63 E-value=5.8e-16 Score=162.80 Aligned_cols=75 Identities=13% Similarity=-0.008 Sum_probs=55.7
Q ss_pred cCCCCCchhc-cchHHH-h-cCCceEEEEccCCccHHHHHHHHH-HcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeC
Q 010836 58 DFTDLTRPHT-WYPLAR-K-KVRKVILHVGPTNSGKTHQALSRL-ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITG 133 (499)
Q Consensus 58 ~~~~l~~~q~-~~~~~~-~-~~~~~vli~apTGsGKT~~~l~~l-~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g 133 (499)
|+ .+++.|. ....+. . ..++++++.+|||+|||++++.+. ...++++|++||++|+.|+.+.+..+++++..+.|
T Consensus 5 ~~-~~r~~Q~~~~~~v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t~~l~~q~~~~~~~l~~~~~~l~g 83 (540)
T 2vl7_A 5 KL-QLRQWQAEKLGEAINALKHGKTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKLLGLKTGFLIG 83 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTCEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHGGGTCCEEEC--
T ss_pred CC-CCCHHHHHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHhcCCcEEEecC
Confidence 56 7899998 544321 1 368899999999999999986544 45678999999999999999999888777776665
No 88
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.56 E-value=5.6e-15 Score=142.50 Aligned_cols=133 Identities=13% Similarity=0.052 Sum_probs=95.2
Q ss_pred CCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHH----c-CCCEEEEccHHHHHHHHHHHHHhcCC----cee
Q 010836 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLE----S-SSSGIYCGPLRLLAWEVAKRLNKANV----SCD 129 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~----~-~~~~l~l~P~r~La~q~~~~l~~~g~----~~~ 129 (499)
..+++.|. +++.+.. +++.++++|||+|||.+++..+. . .++++|++|+++|+.|+.+++.+++. .+.
T Consensus 112 ~~l~~~Q~~ai~~~l~--~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~~ 189 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLV--NRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMIK 189 (282)
T ss_dssp CCCCHHHHHHHHHHHH--HSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGEE
T ss_pred cCccHHHHHHHHHHHh--cCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceEE
Confidence 37889999 9987743 57788999999999999854443 2 34899999999999999999998643 445
Q ss_pred EeeCCeeccc---CCCceEEEceeecc-----ccCCccEEEEecCcccCCCCCChhHHHHHhccccccceEeecCCCc
Q 010836 130 LITGQEREEV---DGAKHRAVTVEMAD-----VVSDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAAV 199 (499)
Q Consensus 130 ~~~g~~~~~~---~~~~~iv~T~e~~~-----~l~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~~~~~~~~~~ 199 (499)
.++|+..... ...+++++|++.+. .+.+++++|+||||++.+ ..+...+..+. ...++++.+++.
T Consensus 190 ~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~vIiDEaH~~~~----~~~~~il~~~~-~~~~~l~lSATp 262 (282)
T 1rif_A 190 KIGGGASKDDKYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATG----KSISSIISGLN-NCMFKFGLSGSL 262 (282)
T ss_dssp ECSTTCSSTTCCCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCH----HHHHHHTTTCT-TCCEEEEECSSC
T ss_pred EEeCCCcchhhhccCCcEEEEchHHHHhhHHHHHhhCCEEEEECCccCCc----ccHHHHHHHhh-cCCeEEEEeCCC
Confidence 5555543322 46789999996542 357899999999999973 23444443332 244556655554
No 89
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.55 E-value=8e-15 Score=137.41 Aligned_cols=145 Identities=18% Similarity=0.124 Sum_probs=94.3
Q ss_pred CCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc----C-----CCEEEEccHHHHHHHHHHHHHh-cC---
Q 010836 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES----S-----SSGIYCGPLRLLAWEVAKRLNK-AN--- 125 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~----~-----~~~l~l~P~r~La~q~~~~l~~-~g--- 125 (499)
..++++|+ +++.+ .++++++++||||||||+++...+.+ . .++++++|+++|+.|+++++.+ ++
T Consensus 60 ~p~~~~q~~~i~~i--~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~ 137 (235)
T 3llm_A 60 LPVKKFESEILEAI--SQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEP 137 (235)
T ss_dssp SGGGGGHHHHHHHH--HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCCT
T ss_pred CChHHHHHHHHHHH--hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhcccc
Confidence 34788888 99988 45999999999999999886544432 2 2678889999999999999874 33
Q ss_pred -CceeEeeCCeeccc-CCCceEEEceeec-----cccCCccEEEEecCccc-CCCCCChh--HHHHHhccccccceEeec
Q 010836 126 -VSCDLITGQEREEV-DGAKHRAVTVEMA-----DVVSDYDCAVIDEIQML-GCKTRGFS--FTRALLGICANELHLCGD 195 (499)
Q Consensus 126 -~~~~~~~g~~~~~~-~~~~~iv~T~e~~-----~~l~~~~~iViDEah~~-~~~~~g~~--~~~~ll~l~~~~~~~~~~ 195 (499)
..++.....+.... .+.+++++|++.+ ..+.+++++||||||++ .+. ++. ..+.++... ...+++..
T Consensus 138 ~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~~~lVlDEah~~~~~~--~~~~~~l~~i~~~~-~~~~~il~ 214 (235)
T 3llm_A 138 GKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDINT--DFLLVVLRDVVQAY-PEVRIVLM 214 (235)
T ss_dssp TSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHHCCTTCCEEEECCTTSCCHHH--HHHHHHHHHHHHHC-TTSEEEEE
T ss_pred CceEEEeechhhccCCCCCeEEEECHHHHHHHHHhhhcCCcEEEEECCccCCcch--HHHHHHHHHHHhhC-CCCeEEEE
Confidence 33333333333222 4577999999544 24689999999999986 322 222 122233222 23455666
Q ss_pred CCCchHHHHHHHHcC
Q 010836 196 PAAVPLIQQILQVTG 210 (499)
Q Consensus 196 ~~~~~~~~~l~~~~~ 210 (499)
+++.+... +..+.+
T Consensus 215 SAT~~~~~-~~~~~~ 228 (235)
T 3llm_A 215 SATIDTSM-FCEYFF 228 (235)
T ss_dssp ECSSCCHH-HHHHTT
T ss_pred ecCCCHHH-HHHHcC
Confidence 66654333 445444
No 90
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.53 E-value=3.5e-14 Score=133.07 Aligned_cols=108 Identities=23% Similarity=0.178 Sum_probs=89.8
Q ss_pred CCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-CCCEEEEccHHHHHHHHHHHHHhcCCc-eeEeeCCee
Q 010836 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVS-CDLITGQER 136 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~-~~~~l~l~P~r~La~q~~~~l~~~g~~-~~~~~g~~~ 136 (499)
..+++.|. ++..+ ++++++++++|||+|||.+++..+.. +++++|++|+++|+.|+.+.+.++++. +..++|+..
T Consensus 92 ~~l~~~Q~~ai~~~--~~~~~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~v~~~~g~~~ 169 (237)
T 2fz4_A 92 ISLRDYQEKALERW--LVDKRGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIFGEEYVGEFSGRIK 169 (237)
T ss_dssp CCCCHHHHHHHHHH--TTTSEEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGGCGGGEEEESSSCB
T ss_pred CCcCHHHHHHHHHH--HhCCCEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 46899999 88877 55778999999999999998766654 578999999999999999999999888 888888764
Q ss_pred cccCCCceEEEceeecc-----ccCCccEEEEecCcccCCC
Q 010836 137 EEVDGAKHRAVTVEMAD-----VVSDYDCAVIDEIQMLGCK 172 (499)
Q Consensus 137 ~~~~~~~~iv~T~e~~~-----~l~~~~~iViDEah~~~~~ 172 (499)
. ...++++|++.+. +..+++++||||||++.+.
T Consensus 170 ~---~~~i~v~T~~~l~~~~~~~~~~~~llIiDEaH~l~~~ 207 (237)
T 2fz4_A 170 E---LKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAE 207 (237)
T ss_dssp C---CCSEEEEEHHHHHHTHHHHTTTCSEEEEECSSCCCTT
T ss_pred C---cCCEEEEeHHHHHhhHHHhcccCCEEEEECCccCCCh
Confidence 3 4678899986652 2256999999999999754
No 91
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.46 E-value=1.1e-13 Score=132.16 Aligned_cols=109 Identities=19% Similarity=0.215 Sum_probs=80.0
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHHc-CCCeEEEEcCCCCHHHHHHHHHHhcCCCC-Ccc-EEEecchhhcccccc-ccEE
Q 010836 238 QTGDCIVTF-SRHAIYRLKKAIESR-GKHLCSIVYGSLPPETRTRQATRFNDASS-EFD-VLVASDAIGMGLNLN-ISRI 312 (499)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~-~~~~v~~~hg~l~~~~R~~~~~~f~~~~g-~~~-iLvaT~~~~~Gidip-v~~V 312 (499)
...++|||+ ++..++.+.+.|.+. +. .+..+||++++++|..+++.|++ + ..+ +|++|+++++|+|++ +++|
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~g~-~~~~l~G~~~~~~R~~~i~~F~~--~~~~~v~L~st~~~g~Glnl~~a~~V 187 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKELNT-EVPFLYGELSKKERDDIISKFQN--NPSVKFIVLSVKAGGFGINLTSANRV 187 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHHCS-CCCEECTTSCHHHHHHHHHHHHH--CTTCCEEEEECCTTCCCCCCTTCSEE
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhcCC-cEEEEECCCCHHHHHHHHHHhcC--CCCCCEEEEehhhhcCCcCcccCCEE
Confidence 345677777 799999999999875 54 89999999999999999999999 5 555 899999999999996 9999
Q ss_pred EEcccccccCccccccChhhHHhhhccCCCCCCCCCcEEEEEEcCCC
Q 010836 313 IFSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDSED 359 (499)
Q Consensus 313 I~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~ 359 (499)
|+++. |+++..+.||+||++|.|+. ....+|.+...+
T Consensus 188 I~~d~---------~wnp~~~~Q~~gR~~R~Gq~-~~v~v~~li~~~ 224 (271)
T 1z5z_A 188 IHFDR---------WWNPAVEDQATDRVYRIGQT-RNVIVHKLISVG 224 (271)
T ss_dssp EECSC---------CSCTTTC---------------CCEEEEEEETT
T ss_pred EEECC---------CCChhHHHHHHHhccccCCC-CceEEEEEeeCC
Confidence 99999 88999999999999999986 334556665443
No 92
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.08 E-value=8.4e-11 Score=123.88 Aligned_cols=73 Identities=16% Similarity=0.138 Sum_probs=57.0
Q ss_pred CCCchhc-cchHHH-h-cCCceEEEEccCCccHHHHHHHHHH-cCCCEEEEccHHHHHHHHHHHHHhc----CCceeEee
Q 010836 61 DLTRPHT-WYPLAR-K-KVRKVILHVGPTNSGKTHQALSRLE-SSSSGIYCGPLRLLAWEVAKRLNKA----NVSCDLIT 132 (499)
Q Consensus 61 ~l~~~q~-~~~~~~-~-~~~~~vli~apTGsGKT~~~l~~l~-~~~~~l~l~P~r~La~q~~~~l~~~----g~~~~~~~ 132 (499)
.+++.|. ....+. . ..++++++.+|||+|||++++.++. ...+++|++||++|+.|+.+.+..+ ++++..+.
T Consensus 3 ~~r~~Q~~~~~~v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~~l~ 82 (551)
T 3crv_A 3 KLRDWQEKLKDKVIEGLRNNFLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFSFLV 82 (551)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCEEEEECCTTSSHHHHHHHHHHHHCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEEECC
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCccHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEEEEc
Confidence 5677787 444321 1 3689999999999999999865544 5678999999999999999998865 66777776
Q ss_pred C
Q 010836 133 G 133 (499)
Q Consensus 133 g 133 (499)
|
T Consensus 83 g 83 (551)
T 3crv_A 83 G 83 (551)
T ss_dssp C
T ss_pred c
Confidence 6
No 93
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.25 E-value=3.4e-06 Score=89.53 Aligned_cols=59 Identities=20% Similarity=0.177 Sum_probs=46.5
Q ss_pred Cchhc-cchHHHhcCCceEEEEccCCccHHHHH--H-HHHH-----cCCCEEEEccHHHHHHHHHHHHHh
Q 010836 63 TRPHT-WYPLARKKVRKVILHVGPTNSGKTHQA--L-SRLE-----SSSSGIYCGPLRLLAWEVAKRLNK 123 (499)
Q Consensus 63 ~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~--l-~~l~-----~~~~~l~l~P~r~La~q~~~~l~~ 123 (499)
++.|. +++.+ +.++++++.|++|||||+.+ + ..+. .+.++++++||..+|.++.+.+..
T Consensus 151 ~~~Q~~Ai~~~--l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 151 INWQKVAAAVA--LTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp CCHHHHHHHHH--HTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHH--hcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHH
Confidence 67788 88887 56899999999999999763 2 3333 224788999999999999887653
No 94
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.20 E-value=6e-06 Score=88.01 Aligned_cols=68 Identities=18% Similarity=0.335 Sum_probs=54.1
Q ss_pred CCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHH---HHHH--cCCCEEEEccHHHHHHHHHHHHHhcCCce
Q 010836 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL---SRLE--SSSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (499)
Q Consensus 59 ~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l---~~l~--~~~~~l~l~P~r~La~q~~~~l~~~g~~~ 128 (499)
+..+++.|. ++..+ +.+..++|.||+|||||+++. ..+. .+.++++++||...+.++.+++.+.|+++
T Consensus 178 ~~~ln~~Q~~av~~~--l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~~~~~ 251 (624)
T 2gk6_A 178 LPDLNHSQVYAVKTV--LQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV 251 (624)
T ss_dssp SCCCCHHHHHHHHHH--HTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTTTCCE
T ss_pred cCCCCHHHHHHHHHH--hcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhcCCeE
Confidence 456788888 77766 457889999999999999853 3333 35689999999999999999998776553
No 95
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.20 E-value=3.3e-06 Score=90.53 Aligned_cols=68 Identities=18% Similarity=0.274 Sum_probs=53.7
Q ss_pred CCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHH----HHHHcCCCEEEEccHHHHHHHHHHHHHhcCCce
Q 010836 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL----SRLESSSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l----~~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~~ 128 (499)
..|++.|. ++..+.. .+...+|.||+|||||.+.. +.+..+.++++++||-..+.++.+++...+.++
T Consensus 188 ~~LN~~Q~~AV~~al~-~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~~~~i 260 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALS-QKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALCKQRI 260 (646)
T ss_dssp TTCCHHHHHHHHHHHH-CSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHTTCCE
T ss_pred CCCCHHHHHHHHHHhc-CCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhcCCce
Confidence 45778888 8877642 34578999999999999853 344567799999999999999999998766544
No 96
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.18 E-value=5.2e-06 Score=90.59 Aligned_cols=68 Identities=21% Similarity=0.329 Sum_probs=54.5
Q ss_pred CCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHH---HHH--cCCCEEEEccHHHHHHHHHHHHHhcCCce
Q 010836 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALS---RLE--SSSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (499)
Q Consensus 59 ~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~---~l~--~~~~~l~l~P~r~La~q~~~~l~~~g~~~ 128 (499)
+..+++.|. ++..+ +.+..++|.||+|||||.++.. .+. .+.++++++||...+.++.+++.+.|.++
T Consensus 358 ~~~Ln~~Q~~Av~~~--l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~g~~i 431 (802)
T 2xzl_A 358 FAQLNSSQSNAVSHV--LQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDLGLKV 431 (802)
T ss_dssp SCCCCHHHHHHHHHH--TTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHTTCCE
T ss_pred cccCCHHHHHHHHHH--hcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhhCccE
Confidence 456788888 77766 4577899999999999998532 232 46789999999999999999998876543
No 97
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.05 E-value=1.6e-05 Score=81.49 Aligned_cols=108 Identities=17% Similarity=0.183 Sum_probs=67.3
Q ss_pred cCCCCCchhc-cchHHHhc---CCceEEEEccCCccHHHHH---HHHHHcCC--CEEEEccHHHHHHHHHHHHHhcCCce
Q 010836 58 DFTDLTRPHT-WYPLARKK---VRKVILHVGPTNSGKTHQA---LSRLESSS--SGIYCGPLRLLAWEVAKRLNKANVSC 128 (499)
Q Consensus 58 ~~~~l~~~q~-~~~~~~~~---~~~~vli~apTGsGKT~~~---l~~l~~~~--~~l~l~P~r~La~q~~~~l~~~g~~~ 128 (499)
.|..|++.|+ ++..+... ....+++.|+.|||||+++ +..+...+ .+++++||...+..+.+++ +..+
T Consensus 22 ~~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~---~~~~ 98 (459)
T 3upu_A 22 TFDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS---GKEA 98 (459)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH---SSCE
T ss_pred ccccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh---ccch
Confidence 6788888888 77655322 2349999999999999985 34444433 5888999999998887766 3333
Q ss_pred eEeeCC---eecccCCCceEEEceeeccccCCccEEEEecCcccC
Q 010836 129 DLITGQ---EREEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 129 ~~~~g~---~~~~~~~~~~iv~T~e~~~~l~~~~~iViDEah~~~ 170 (499)
.-++.- ........ ..+ .......+.+++++||||+|++.
T Consensus 99 ~T~h~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~iiiDE~~~~~ 141 (459)
T 3upu_A 99 STIHSILKINPVTYEEN-VLF-EQKEVPDLAKCRVLICDEVSMYD 141 (459)
T ss_dssp EEHHHHHTEEEEECSSC-EEE-EECSCCCCSSCSEEEESCGGGCC
T ss_pred hhHHHHhccCccccccc-chh-cccccccccCCCEEEEECchhCC
Confidence 322211 00000011 111 11122345679999999999875
No 98
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.03 E-value=5.7e-06 Score=87.89 Aligned_cols=109 Identities=18% Similarity=0.241 Sum_probs=63.8
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecc--hhhcccccc---ccEE
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD--AIGMGLNLN---ISRI 312 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~--~~~~Gidip---v~~V 312 (499)
+|.+++|| |.+..+.+++.|+ .. ... ...+++...|...++.|+ ++-.||+||. .+.+|||+| .+.|
T Consensus 448 ~g~~lvlF~Sy~~l~~v~~~l~-~~--~~~-~~q~~~~~~~~~ll~~f~---~~~~vL~~v~~gsf~EGiD~~g~~l~~v 520 (620)
T 4a15_A 448 KKNTIVYFPSYSLMDRVENRVS-FE--HMK-EYRGIDQKELYSMLKKFR---RDHGTIFAVSGGRLSEGINFPGNELEMI 520 (620)
T ss_dssp CSCEEEEESCHHHHHHHTSSCC-SC--CEE-CCTTCCSHHHHHHHHHHT---TSCCEEEEETTSCC--------CCCCEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHH-hc--chh-ccCCCChhHHHHHHHHhc---cCCcEEEEEecCceeccccCCCCceEEE
Confidence 44445555 5555555555443 11 111 333444567889999998 3446899974 999999995 8899
Q ss_pred EEcccccccCc---------------------cccccChhhHHhhhccCCCCCCCCCcEEEEEEcC
Q 010836 313 IFSTMKKFDGV---------------------ELRDLTVPEVKQIAGRAGRYGSKFPVGEVTCLDS 357 (499)
Q Consensus 313 I~~~~~~~~~~---------------------~~~p~s~~~~~Qr~GRagR~g~~~~~g~~~~~~~ 357 (499)
|..+++.-.++ ..-| ......|-+||+=|... ..|.++.++.
T Consensus 521 iI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~--D~G~v~llD~ 583 (620)
T 4a15_A 521 ILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAE--DTGACVILDK 583 (620)
T ss_dssp EESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTT--CCEEEEEECG
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCC--ceEEEEEEcc
Confidence 99988753221 0011 34556899999999876 4588877754
No 99
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.00 E-value=1.8e-05 Score=86.14 Aligned_cols=68 Identities=18% Similarity=0.335 Sum_probs=53.9
Q ss_pred CCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHH---HHHH--cCCCEEEEccHHHHHHHHHHHHHhcCCce
Q 010836 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL---SRLE--SSSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (499)
Q Consensus 59 ~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l---~~l~--~~~~~l~l~P~r~La~q~~~~l~~~g~~~ 128 (499)
...+++.|. ++..+ +.+..++|.||+|+|||++.. ..+. .+.++++++||...+.++.+++.+.|+++
T Consensus 354 ~~~Ln~~Q~~Av~~~--l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~g~~v 427 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTV--LQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKV 427 (800)
T ss_dssp SCCCCHHHHHHHHHH--HTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTTTCCE
T ss_pred ccCCCHHHHHHHHHh--ccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHhCcce
Confidence 445778888 77766 457889999999999999853 3333 35688999999999999999998776653
No 100
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.78 E-value=8.4e-05 Score=78.05 Aligned_cols=121 Identities=15% Similarity=0.179 Sum_probs=72.1
Q ss_pred CCCchhc-cchHHHhcCCceEEEEccCCccHHHHHH---HHH-HcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCe
Q 010836 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQAL---SRL-ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQE 135 (499)
Q Consensus 61 ~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l---~~l-~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~ 135 (499)
.+++.|. ++..+ ..++.+++.||.|||||+.+. ..+ ..+.++++++||...+..+.+.+. .....++.-.
T Consensus 189 ~L~~~Q~~Av~~~--~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~---~~a~Tih~ll 263 (574)
T 3e1s_A 189 GLSEEQASVLDQL--AGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTG---RTASTVHRLL 263 (574)
T ss_dssp TCCHHHHHHHHHH--TTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHT---SCEEEHHHHT
T ss_pred CCCHHHHHHHHHH--HhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhc---ccHHHHHHHH
Confidence 4677888 77776 568999999999999999852 222 345688999999999988876553 2222211110
Q ss_pred ecccCCCceEEEceeeccccCCccEEEEecCcccCCCCCChhHHHHHhc-cc-cccceEeecCC
Q 010836 136 REEVDGAKHRAVTVEMADVVSDYDCAVIDEIQMLGCKTRGFSFTRALLG-IC-ANELHLCGDPA 197 (499)
Q Consensus 136 ~~~~~~~~~iv~T~e~~~~l~~~~~iViDEah~~~~~~~g~~~~~~ll~-l~-~~~~~~~~~~~ 197 (499)
.... . . .. .......+++++||||++++... +...++. +. ...+.++|+..
T Consensus 264 ~~~~-~-~---~~-~~~~~~~~~dvlIIDEasml~~~-----~~~~Ll~~~~~~~~lilvGD~~ 316 (574)
T 3e1s_A 264 GYGP-Q-G---FR-HNHLEPAPYDLLIVDEVSMMGDA-----LMLSLLAAVPPGARVLLVGDTD 316 (574)
T ss_dssp TEET-T-E---ES-CSSSSCCSCSEEEECCGGGCCHH-----HHHHHHTTSCTTCEEEEEECTT
T ss_pred cCCc-c-h---hh-hhhcccccCCEEEEcCccCCCHH-----HHHHHHHhCcCCCEEEEEeccc
Confidence 0000 0 0 00 00112246899999999998522 2233333 32 23456666654
No 101
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.76 E-value=3.6e-05 Score=77.22 Aligned_cols=106 Identities=25% Similarity=0.220 Sum_probs=69.1
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceeecccc
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMADVV 155 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~~~l 155 (499)
..+..++.|+.|||||+.+...+. ..+.++++||++++.++.+++.+.|.. .....-+.|.+.+-..
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~-~~~~lVlTpT~~aa~~l~~kl~~~~~~------------~~~~~~V~T~dsfL~~ 226 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVN-FEEDLILVPGRQAAEMIRRRANASGII------------VATKDNVRTVDSFLMN 226 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCC-TTTCEEEESCHHHHHHHHHHHTTTSCC------------CCCTTTEEEHHHHHHT
T ss_pred cccEEEEEcCCCCCHHHHHHHHhc-cCCeEEEeCCHHHHHHHHHHhhhcCcc------------ccccceEEEeHHhhcC
Confidence 467889999999999998876654 367899999999999999988654210 1112234555433211
Q ss_pred ------CCccEEEEecCcccCCCCCChhHHHHHhccccccceEeecCCC
Q 010836 156 ------SDYDCAVIDEIQMLGCKTRGFSFTRALLGICANELHLCGDPAA 198 (499)
Q Consensus 156 ------~~~~~iViDEah~~~~~~~g~~~~~~ll~l~~~~~~~~~~~~~ 198 (499)
...+++||||+-++.. |.. ...+....+..+.++|+..-
T Consensus 227 ~~~~~~~~~d~liiDE~sm~~~---~~l-~~l~~~~~~~~vilvGD~~Q 271 (446)
T 3vkw_A 227 YGKGARCQFKRLFIDEGLMLHT---GCV-NFLVEMSLCDIAYVYGDTQQ 271 (446)
T ss_dssp TTSSCCCCCSEEEEETGGGSCH---HHH-HHHHHHTTCSEEEEEECTTS
T ss_pred CCCCCCCcCCEEEEeCcccCCH---HHH-HHHHHhCCCCEEEEecCccc
Confidence 1389999999997742 222 22222334466677777643
No 102
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.25 E-value=0.00057 Score=61.56 Aligned_cols=85 Identities=14% Similarity=0.228 Sum_probs=45.7
Q ss_pred cCCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEcee
Q 010836 75 KVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVE 150 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e 150 (499)
..++..++.||.|||||+.++..+. .+.+++++.|...--..-.......|+.+....- ... .+
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~------~~~------~~ 93 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPV------SAS------KD 93 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEEC------SSG------GG
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeec------CCH------HH
Confidence 3477888999999999999876654 4568888888764211101111122322211100 000 13
Q ss_pred ecccc-CCccEEEEecCcccCC
Q 010836 151 MADVV-SDYDCAVIDEIQMLGC 171 (499)
Q Consensus 151 ~~~~l-~~~~~iViDEah~~~~ 171 (499)
.+... ..+++|+|||+|-+..
T Consensus 94 ~~~~~~~~~dvViIDEaQF~~~ 115 (214)
T 2j9r_A 94 IFKHITEEMDVIAIDEVQFFDG 115 (214)
T ss_dssp GGGGCCSSCCEEEECCGGGSCT
T ss_pred HHHHHhcCCCEEEEECcccCCH
Confidence 33333 3589999999999754
No 103
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.95 E-value=0.0003 Score=62.65 Aligned_cols=37 Identities=24% Similarity=0.266 Sum_probs=28.8
Q ss_pred cCCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHH
Q 010836 75 KVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLR 111 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~r 111 (499)
..++..++.||+|||||+.++..+. .+.+++++.|..
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 3478899999999999999876553 456788888873
No 104
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.93 E-value=0.0032 Score=55.62 Aligned_cols=36 Identities=31% Similarity=0.316 Sum_probs=27.9
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHH
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLR 111 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~r 111 (499)
.++..++.||.|+|||+.+++.+. .+.+++++.|..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 467899999999999999866553 345678888874
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.72 E-value=0.0015 Score=57.35 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=44.9
Q ss_pred CCceEEEEccCCccHHHHHH---HHHH-cCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceee
Q 010836 76 VRKVILHVGPTNSGKTHQAL---SRLE-SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l---~~l~-~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~ 151 (499)
.++.+++.||+|+|||+.+- ..+. ..+..++..+..++...+...+...... +.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~ 94 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDT----------------------KF 94 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCS----------------------HH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHH----------------------HH
Confidence 37899999999999999962 2232 3443444455556665555444432110 12
Q ss_pred ccccCCccEEEEecCcccC
Q 010836 152 ADVVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 152 ~~~l~~~~~iViDEah~~~ 170 (499)
+..+.+.+++|+||++...
T Consensus 95 ~~~~~~~~llilDE~~~~~ 113 (180)
T 3ec2_A 95 LKTVLNSPVLVLDDLGSER 113 (180)
T ss_dssp HHHHHTCSEEEEETCSSSC
T ss_pred HHHhcCCCEEEEeCCCCCc
Confidence 2333467999999998643
No 106
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.64 E-value=0.0036 Score=53.21 Aligned_cols=19 Identities=26% Similarity=0.352 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.++.+++.||+|+|||+.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5789999999999999874
No 107
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.62 E-value=0.00064 Score=61.82 Aligned_cols=80 Identities=14% Similarity=0.107 Sum_probs=46.6
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHH--HHHHHHHHhcCCceeEeeCCeecccCCCceEEEce
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLA--WEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTV 149 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~r~La--~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~ 149 (499)
.++..++.|+.|||||+.++..+. .+.+++++.|...-- ..+..+ .|+...... . .. ..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr---~G~~~~a~~-----i-~~------~~ 82 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTH---DRNTMEALP-----A-CL------LR 82 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC--------------CEEEE-----E-SS------GG
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhh---cCCeeEEEe-----c-CC------HH
Confidence 478899999999999999876654 356788888875311 122222 232221110 0 00 01
Q ss_pred eeccccCCccEEEEecCcccC
Q 010836 150 EMADVVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 150 e~~~~l~~~~~iViDEah~~~ 170 (499)
+.+.....+++|+|||+|-+.
T Consensus 83 di~~~~~~~dvViIDEaQF~~ 103 (234)
T 2orv_A 83 DVAQEALGVAVIGIDEGQFFP 103 (234)
T ss_dssp GGHHHHTTCSEEEESSGGGCT
T ss_pred HHHHHhccCCEEEEEchhhhh
Confidence 233334779999999999985
No 108
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.59 E-value=0.0045 Score=56.66 Aligned_cols=19 Identities=37% Similarity=0.499 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.++.+++.||+|+|||+.+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4789999999999999875
No 109
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.52 E-value=0.0044 Score=55.65 Aligned_cols=83 Identities=17% Similarity=0.201 Sum_probs=46.2
Q ss_pred cCCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEc--
Q 010836 75 KVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVT-- 148 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T-- 148 (499)
..+...++.||.|||||+..+..+. .+.+++++.|...--..........|+.... +.+.
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a--------------~~v~~~ 91 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEA--------------INISKA 91 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-----------CBTTBCCEE--------------EEESSG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccCCcchhhhHHHhcCCceee--------------EEeCCH
Confidence 3478899999999999998765543 3567888888653211111111122222111 1111
Q ss_pred eeeccc-cCCccEEEEecCcccCC
Q 010836 149 VEMADV-VSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 149 ~e~~~~-l~~~~~iViDEah~~~~ 171 (499)
.++++. ..++++|+|||||-+.+
T Consensus 92 ~di~~~i~~~~dvV~IDEaQFf~~ 115 (219)
T 3e2i_A 92 SEIMTHDLTNVDVIGIDEVQFFDD 115 (219)
T ss_dssp GGGGGSCCTTCSEEEECCGGGSCT
T ss_pred HHHHHHHhcCCCEEEEechhcCCH
Confidence 123332 26789999999999864
No 110
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.17 E-value=0.0026 Score=56.34 Aligned_cols=84 Identities=17% Similarity=0.131 Sum_probs=47.0
Q ss_pred hHHHhcCCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccH---HHHHHHHHHHHHhcCCceeEeeCCeecccCCC
Q 010836 70 PLARKKVRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPL---RLLAWEVAKRLNKANVSCDLITGQEREEVDGA 142 (499)
Q Consensus 70 ~~~~~~~~~~vli~apTGsGKT~~~l~~l----~~~~~~l~l~P~---r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~ 142 (499)
|......++..++.||.|||||+..++.+ ..+.+++|+-|. |.. .++..++... .++..+ ..
T Consensus 13 ~~~~~~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~-~~i~S~~g~~-~~A~~~-~~-------- 81 (195)
T 1w4r_A 13 PRGSKTRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNT-MEALPA-CL-------- 81 (195)
T ss_dssp ------CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGG-GSCCHHHHHH-SEEEEE-SS--------
T ss_pred ccCCCCceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccch-hhhhhccCCc-ccceec-CC--------
Confidence 33333458899999999999997776655 345678888776 432 2222222110 111110 00
Q ss_pred ceEEEceeeccccCCccEEEEecCccc
Q 010836 143 KHRAVTVEMADVVSDYDCAVIDEIQML 169 (499)
Q Consensus 143 ~~iv~T~e~~~~l~~~~~iViDEah~~ 169 (499)
..+......++++|+|||+|-+
T Consensus 82 -----~~d~~~~~~~~DvIlIDEaQFf 103 (195)
T 1w4r_A 82 -----LRDVAQEALGVAVIGIDEGQFF 103 (195)
T ss_dssp -----GGGGHHHHHTCSEEEESSGGGC
T ss_pred -----HHHHHHhccCCCEEEEEchhhh
Confidence 0112222456899999999998
No 111
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.11 E-value=0.02 Score=49.74 Aligned_cols=19 Identities=21% Similarity=0.291 Sum_probs=16.8
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
....+++.||+|+|||+.+
T Consensus 42 ~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SSCEEEEESCGGGCHHHHH
T ss_pred CCCceEEECCCCCCHHHHH
Confidence 3678999999999999986
No 112
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.09 E-value=0.0049 Score=55.09 Aligned_cols=17 Identities=29% Similarity=0.204 Sum_probs=15.9
Q ss_pred ceEEEEccCCccHHHHH
Q 010836 78 KVILHVGPTNSGKTHQA 94 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~ 94 (499)
+.+++.||+|+|||+.+
T Consensus 55 ~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 78999999999999986
No 113
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.85 E-value=0.0089 Score=57.79 Aligned_cols=72 Identities=22% Similarity=0.347 Sum_probs=41.6
Q ss_pred CceEEEEccCCccHHHHHH---HHHHc-CCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceeec
Q 010836 77 RKVILHVGPTNSGKTHQAL---SRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEMA 152 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l---~~l~~-~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~~ 152 (499)
...+++.||+|+|||+.+- ..+.. +...+++. ...+..+....+...... ...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~----------------------~~~ 93 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSS-ADDFAQAMVEHLKKGTIN----------------------EFR 93 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEE-HHHHHHHHHHHHHHTCHH----------------------HHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE-HHHHHHHHHHHHHcCcHH----------------------HHH
Confidence 4689999999999999962 23333 34556653 333444444333321000 001
Q ss_pred cccCCccEEEEecCcccCC
Q 010836 153 DVVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 153 ~~l~~~~~iViDEah~~~~ 171 (499)
....+.++++|||+|.+..
T Consensus 94 ~~~~~~~vL~iDEi~~l~~ 112 (324)
T 1l8q_A 94 NMYKSVDLLLLDDVQFLSG 112 (324)
T ss_dssp HHHHTCSEEEEECGGGGTT
T ss_pred HHhcCCCEEEEcCcccccC
Confidence 1123468999999999864
No 114
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.82 E-value=0.027 Score=49.01 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=16.7
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
..+.++++||+|+|||+.+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SSCEEEEECCTTSCHHHHH
T ss_pred CCCceEEECCCCCCHHHHH
Confidence 3578999999999999986
No 115
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=95.79 E-value=0.0067 Score=64.67 Aligned_cols=62 Identities=21% Similarity=0.133 Sum_probs=48.0
Q ss_pred CCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHH---HHHcC-----CCEEEEccHHHHHHHHHHHHHhc
Q 010836 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALS---RLESS-----SSGIYCGPLRLLAWEVAKRLNKA 124 (499)
Q Consensus 59 ~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~---~l~~~-----~~~l~l~P~r~La~q~~~~l~~~ 124 (499)
+..+++.|. ++. ..+..++|.|+.|||||.+... .+... .+++++++|+..+.++.+++.+.
T Consensus 7 ~~~Ln~~Q~~av~----~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~ 77 (647)
T 3lfu_A 7 LDSLNDKQREAVA----APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQL 77 (647)
T ss_dssp HTTCCHHHHHHHT----CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hhcCCHHHHHHHh----CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHH
Confidence 466788888 554 2266789999999999999643 33332 47899999999999999999753
No 116
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=95.43 E-value=0.021 Score=60.39 Aligned_cols=63 Identities=19% Similarity=0.079 Sum_probs=46.8
Q ss_pred CCCchhc-cchHH-Hh-cCCceEEEEccCCccHHHHHHHHHH-----cCCCEEEEccHHHHHHHHHHHHHh
Q 010836 61 DLTRPHT-WYPLA-RK-KVRKVILHVGPTNSGKTHQALSRLE-----SSSSGIYCGPLRLLAWEVAKRLNK 123 (499)
Q Consensus 61 ~l~~~q~-~~~~~-~~-~~~~~vli~apTGsGKT~~~l~~l~-----~~~~~l~l~P~r~La~q~~~~l~~ 123 (499)
.+++.|. ....+ .. .+++++++.||||+|||++++.++. .+.+++|++||++|+.|+.+.+..
T Consensus 3 ~~R~~Q~~~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~ 73 (620)
T 4a15_A 3 ENRQYQVEAIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRS 73 (620)
T ss_dssp --CHHHHHHHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHH
Confidence 4566776 33211 11 3589999999999999999865543 257899999999999999988774
No 117
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.40 E-value=0.0098 Score=57.17 Aligned_cols=71 Identities=21% Similarity=0.250 Sum_probs=39.0
Q ss_pred CceEEEEccCCccHHHHH---HHHHH-c-CCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceee
Q 010836 77 RKVILHVGPTNSGKTHQA---LSRLE-S-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~---l~~l~-~-~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~ 151 (499)
++.+++.||+|+|||..+ ...+. . +.+++++. .-.+..+ +... .. .|. ..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~-~~~l~~~----l~~~-~~----~~~-------------~~~~ 208 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH-FPSFAID----VKNA-IS----NGS-------------VKEE 208 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE-HHHHHHH----HHCC-CC---------------------CCT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE-HHHHHHH----HHHH-hc----cch-------------HHHH
Confidence 689999999999999985 22333 3 34555552 2233332 2221 00 010 0123
Q ss_pred ccccCCccEEEEecCcccC
Q 010836 152 ADVVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 152 ~~~l~~~~~iViDEah~~~ 170 (499)
+..+.+.+++||||++...
T Consensus 209 ~~~~~~~~lLiiDdig~~~ 227 (308)
T 2qgz_A 209 IDAVKNVPVLILDDIGAEQ 227 (308)
T ss_dssp THHHHTSSEEEEETCCC--
T ss_pred HHHhcCCCEEEEcCCCCCC
Confidence 3344567899999997543
No 118
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.08 E-value=0.052 Score=52.31 Aligned_cols=21 Identities=33% Similarity=0.393 Sum_probs=17.7
Q ss_pred CceEEEEccCCccHHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALSR 97 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~ 97 (499)
.+.+++.||+|+|||+.+-..
T Consensus 51 ~~~vLl~GppGtGKT~la~ai 71 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAV 71 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHH
Confidence 578999999999999987433
No 119
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.04 E-value=0.023 Score=57.43 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=42.3
Q ss_pred CceEEEEccCCccHHHHHH---HHHHc---CCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEcee
Q 010836 77 RKVILHVGPTNSGKTHQAL---SRLES---SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVE 150 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l---~~l~~---~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e 150 (499)
...+++.||+|+|||+.+- ..+.. +..++++.. ..+..++...+..... ..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~-~~~~~~~~~~~~~~~~----------------------~~ 186 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS-EKFLNDLVDSMKEGKL----------------------NE 186 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH-HHHHHHHHHHHHTTCH----------------------HH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH-HHHHHHHHHHHHcccH----------------------HH
Confidence 4689999999999999862 22222 345555533 3344444444432100 00
Q ss_pred eccccC-CccEEEEecCcccCC
Q 010836 151 MADVVS-DYDCAVIDEIQMLGC 171 (499)
Q Consensus 151 ~~~~l~-~~~~iViDEah~~~~ 171 (499)
...... +.++++|||+|.+..
T Consensus 187 ~~~~~~~~~~vL~IDEi~~l~~ 208 (440)
T 2z4s_A 187 FREKYRKKVDILLIDDVQFLIG 208 (440)
T ss_dssp HHHHHTTTCSEEEEECGGGGSS
T ss_pred HHHHhcCCCCEEEEeCcccccC
Confidence 111223 678999999999874
No 120
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.88 E-value=0.049 Score=53.67 Aligned_cols=18 Identities=33% Similarity=0.405 Sum_probs=16.4
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
.+.+++.||+|+|||..+
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 568999999999999996
No 121
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.72 E-value=0.041 Score=53.33 Aligned_cols=20 Identities=40% Similarity=0.406 Sum_probs=16.9
Q ss_pred CceEEEEccCCccHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~ 96 (499)
...+++.||+|+|||+.+-.
T Consensus 55 ~~~vll~G~~GtGKT~la~~ 74 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANI 74 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHH
Confidence 35799999999999988643
No 122
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=94.35 E-value=0.092 Score=51.35 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=17.1
Q ss_pred CceEEEEccCCccHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~ 96 (499)
.+.+++.||+|+|||+.+-.
T Consensus 84 ~~~iLL~GppGtGKT~la~a 103 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKA 103 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHH
T ss_pred CceEEEECCCCCcHHHHHHH
Confidence 46799999999999998743
No 123
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.35 E-value=0.11 Score=50.02 Aligned_cols=20 Identities=35% Similarity=0.486 Sum_probs=17.3
Q ss_pred CceEEEEccCCccHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~ 96 (499)
.+.+++.||+|+|||+.+-.
T Consensus 45 ~~~iLL~GppGtGKT~la~a 64 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKA 64 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHH
Confidence 57899999999999988643
No 124
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.31 E-value=0.069 Score=50.22 Aligned_cols=21 Identities=43% Similarity=0.455 Sum_probs=17.8
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~ 96 (499)
..+.+++.||+|+|||+.+-.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~ 70 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKA 70 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHH
Confidence 467899999999999988643
No 125
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.28 E-value=0.15 Score=48.29 Aligned_cols=20 Identities=40% Similarity=0.453 Sum_probs=17.4
Q ss_pred CCceEEEEccCCccHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l 95 (499)
..+.+++.||+|+|||+.+-
T Consensus 53 ~~~~vll~Gp~GtGKT~la~ 72 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLAR 72 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHH
Confidence 36789999999999998864
No 126
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=94.22 E-value=0.15 Score=50.35 Aligned_cols=108 Identities=11% Similarity=0.026 Sum_probs=65.2
Q ss_pred CCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHH-----HHHc-CCCEEEEccHHHHHHHHHHHHHhc----C--Cc
Q 010836 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALS-----RLES-SSSGIYCGPLRLLAWEVAKRLNKA----N--VS 127 (499)
Q Consensus 61 ~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~-----~l~~-~~~~l~l~P~r~La~q~~~~l~~~----g--~~ 127 (499)
.+++.|. ++..+. ..+.+++..+-+.|||..+.. .+.. +..+++++|++..|..+.+.++.+ . +.
T Consensus 163 ~L~p~Qk~il~~l~--~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~ll~ 240 (385)
T 2o0j_A 163 QLRDYQRDMLKIMS--SKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQ 240 (385)
T ss_dssp CCCHHHHHHHHHHH--HSSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTTTS
T ss_pred CCCHHHHHHHHhhc--cCcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHhhh
Confidence 6788998 665442 356789999999999998522 1222 346788899999998888776642 1 11
Q ss_pred --eeEeeCCeecccCCCceEEEce--eeccccCCccEEEEecCcccCC
Q 010836 128 --CDLITGQEREEVDGAKHRAVTV--EMADVVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 128 --~~~~~g~~~~~~~~~~~iv~T~--e~~~~l~~~~~iViDEah~~~~ 171 (499)
.............+..+.+.+. +.+. -.+.+++|+||+|...+
T Consensus 241 ~~~~~~~~~~I~f~nGs~i~~lsa~~~slr-G~~~~~viiDE~a~~~~ 287 (385)
T 2o0j_A 241 PGIVEWNKGSIELDNGSSIGAYASSPDAVR-GNSFAMIYIEDCAFIPN 287 (385)
T ss_dssp CCEEEECSSEEEETTSCEEEEEECSHHHHH-TSCCSEEEEESGGGSTT
T ss_pred hhhccCCccEEEeCCCCEEEEEECCCCCcc-CCCCCEEEechhhhcCC
Confidence 1111111222222333333332 1111 24578999999999863
No 127
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.17 E-value=0.12 Score=50.72 Aligned_cols=19 Identities=32% Similarity=0.309 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.++.+++.||+|+|||+.+
T Consensus 44 ~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCEEEEECTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999996
No 128
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=94.13 E-value=0.038 Score=59.64 Aligned_cols=61 Identities=16% Similarity=0.096 Sum_probs=46.7
Q ss_pred CCCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHH---HHHc-C----CCEEEEccHHHHHHHHHHHHHh
Q 010836 59 FTDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALS---RLES-S----SSGIYCGPLRLLAWEVAKRLNK 123 (499)
Q Consensus 59 ~~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~---~l~~-~----~~~l~l~P~r~La~q~~~~l~~ 123 (499)
+..|++.|. ++.. ....++|.|+.|||||.+... .+.. . .+++++..|+..|.++.+++.+
T Consensus 9 l~~Ln~~Q~~av~~----~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~ 78 (724)
T 1pjr_A 9 LAHLNKEQQEAVRT----TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQS 78 (724)
T ss_dssp HTTSCHHHHHHHHC----CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHhC----CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 356788888 5543 256789999999999998633 3332 2 3689999999999999999875
No 129
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.03 E-value=0.035 Score=59.42 Aligned_cols=59 Identities=19% Similarity=0.107 Sum_probs=44.9
Q ss_pred CCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHH---HH-c----CCCEEEEccHHHHHHHHHHHHHh
Q 010836 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSR---LE-S----SSSGIYCGPLRLLAWEVAKRLNK 123 (499)
Q Consensus 61 ~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~---l~-~----~~~~l~l~P~r~La~q~~~~l~~ 123 (499)
.+++.|. ++.. .+..++|.|+.|||||.+.... +. . ..++++++.|+..|.++.+++.+
T Consensus 2 ~L~~~Q~~av~~----~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~ 69 (673)
T 1uaa_A 2 RLNPGQQQAVEF----VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQ 69 (673)
T ss_dssp CCCHHHHHHHHC----CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhC----CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHH
Confidence 3666777 5542 3678999999999999996432 22 2 24789999999999999999975
No 130
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=94.00 E-value=0.11 Score=54.06 Aligned_cols=119 Identities=17% Similarity=0.104 Sum_probs=75.9
Q ss_pred CCCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEec--chhhcccccc------
Q 010836 238 QTGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVAS--DAIGMGLNLN------ 308 (499)
Q Consensus 238 ~~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT--~~~~~Gidip------ 308 (499)
.+|.+++|| |.+..+.+++. ....+..-..+++.. ...+.|+. ..-.||+|| ..+.+|||+|
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~~----~~~~v~~q~~~~~~~---~~~~~~~~--~~~~vl~~v~gg~~~EGiD~~d~~g~~ 462 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMSR----ISLPKYVESEDSSVE---DLYSAISA--NNKVLIGSVGKGKLAEGIELRNNDRSL 462 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHTT----CCSSEEECCSSCCHH---HHHHHTTS--SSSCEEEEESSCCSCCSSCCEETTEES
T ss_pred CCCCEEEEecCHHHHHHHHHh----cCCcEEEcCCCCCHH---HHHHHHHh--cCCeEEEEEecceecccccccccCCcc
Confidence 466677777 78877777762 222344333345543 67788864 334799998 6999999998
Q ss_pred ccEEEEcccccccCc--------------ccccc-------ChhhHHhhhccCCCCCCCCCcEEEEEEcCCCH-HHHHhh
Q 010836 309 ISRIIFSTMKKFDGV--------------ELRDL-------TVPEVKQIAGRAGRYGSKFPVGEVTCLDSEDL-PLLHKS 366 (499)
Q Consensus 309 v~~VI~~~~~~~~~~--------------~~~p~-------s~~~~~Qr~GRagR~g~~~~~g~~~~~~~~~~-~~~~~~ 366 (499)
.+.||..+++.-.++ +..+. ....+.|-+||+=|... ..|.++.++..-. ..+...
T Consensus 463 l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~pa~~~l~Qa~GRlIR~~~--D~G~v~llD~R~~~~~~~~~ 540 (551)
T 3crv_A 463 ISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIPALVTIKQAIGRAIRDVN--DKCNVWLLDKRFESLYWKKN 540 (551)
T ss_dssp EEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHHHHHHHHHHHHTTCCSTT--CEEEEEEESGGGGSHHHHHH
T ss_pred eeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHhccCccCCC--ccEEEEEeehhcccchhhhh
Confidence 688998887753321 00011 34567799999999876 4588887765422 344444
Q ss_pred h
Q 010836 367 L 367 (499)
Q Consensus 367 ~ 367 (499)
+
T Consensus 541 ~ 541 (551)
T 3crv_A 541 L 541 (551)
T ss_dssp T
T ss_pred c
Confidence 3
No 131
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.99 E-value=0.073 Score=52.25 Aligned_cols=19 Identities=37% Similarity=0.293 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
....++++||+|+|||+.+
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 4678999999999999996
No 132
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=93.71 E-value=0.16 Score=50.36 Aligned_cols=21 Identities=33% Similarity=0.449 Sum_probs=17.8
Q ss_pred CceEEEEccCCccHHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALSR 97 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~ 97 (499)
.+.+++.||+|+|||+.+-..
T Consensus 148 ~~~vLL~GppGtGKT~la~ai 168 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAV 168 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHH
Confidence 578999999999999887433
No 133
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=93.68 E-value=0.19 Score=52.81 Aligned_cols=108 Identities=11% Similarity=0.046 Sum_probs=64.9
Q ss_pred CCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHH-----HHHcC-CCEEEEccHHHHHHHHHHHHHhc----C--Cc
Q 010836 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALS-----RLESS-SSGIYCGPLRLLAWEVAKRLNKA----N--VS 127 (499)
Q Consensus 61 ~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~-----~l~~~-~~~l~l~P~r~La~q~~~~l~~~----g--~~ 127 (499)
.+++.|. ++..+ ...+.+++.++-|+|||..+.. .+... ..+++++|++..|.++.+.++.. . +.
T Consensus 163 ~l~p~Q~~i~~~l--~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~~~ 240 (592)
T 3cpe_A 163 QLRDYQRDMLKIM--SSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDFLQ 240 (592)
T ss_dssp CCCHHHHHHHHHH--HHCSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCTTTS
T ss_pred cCCHHHHHHHHhh--ccccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChHhhc
Confidence 5788888 65544 2357789999999999998521 22222 36788999999999998877642 1 11
Q ss_pred eeE--eeCCeecccCCCceEEEce--eeccccCCccEEEEecCcccCC
Q 010836 128 CDL--ITGQEREEVDGAKHRAVTV--EMADVVSDYDCAVIDEIQMLGC 171 (499)
Q Consensus 128 ~~~--~~g~~~~~~~~~~~iv~T~--e~~~~l~~~~~iViDEah~~~~ 171 (499)
... .+........+..+.+.+. +.+.. .+.+++|+||+|...+
T Consensus 241 ~~~~~~~~~~i~~~nGs~i~~~s~~~~~lrG-~~~~~~iiDE~~~~~~ 287 (592)
T 3cpe_A 241 PGIVEWNKGSIELDNGSSIGAYASSPDAVRG-NSFAMIYIEDCAFIPN 287 (592)
T ss_dssp CCEEEECSSEEEETTSCEEEEEECCHHHHHH-SCCSEEEEETGGGCTT
T ss_pred cccccCCccEEEecCCCEEEEEeCCCCCccC-CCcceEEEehhccCCc
Confidence 111 1111112222333333321 11112 3578999999999864
No 134
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=93.63 E-value=0.046 Score=52.49 Aligned_cols=19 Identities=37% Similarity=0.448 Sum_probs=16.6
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
...+++.||+|+|||+.+-
T Consensus 38 ~~~vll~G~~GtGKT~la~ 56 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAH 56 (324)
T ss_dssp CCCCEEECCTTCCCHHHHH
T ss_pred CCcEEEECCCCCCHHHHHH
Confidence 4789999999999998863
No 135
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.62 E-value=0.14 Score=50.17 Aligned_cols=23 Identities=35% Similarity=0.335 Sum_probs=18.7
Q ss_pred CCceEEEEccCCccHHHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALSRL 98 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l 98 (499)
..+.+++.||+|+|||+.+-...
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia 138 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIA 138 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHH
Confidence 46789999999999999874433
No 136
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=93.59 E-value=0.071 Score=61.10 Aligned_cols=60 Identities=18% Similarity=0.126 Sum_probs=46.4
Q ss_pred CCCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHH----HcC------CCEEEEccHHHHHHHHHHHHHh
Q 010836 60 TDLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRL----ESS------SSGIYCGPLRLLAWEVAKRLNK 123 (499)
Q Consensus 60 ~~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l----~~~------~~~l~l~P~r~La~q~~~~l~~ 123 (499)
..+|+.|. ++. ..+++++|.|..|||||.+....+ ..+ .+++++.+|+..|.++.+++.+
T Consensus 9 ~~~t~eQ~~~i~----~~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 9 STWTDDQWNAIV----STGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp -CCCHHHHHHHH----CCSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHh----CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 45788887 544 337899999999999999965433 222 2679999999999999999875
No 137
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=92.85 E-value=0.091 Score=53.13 Aligned_cols=19 Identities=32% Similarity=0.429 Sum_probs=16.4
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
-..+++.||+|+|||+.+-
T Consensus 50 ~~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 50 LHSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCcHHHHHH
Confidence 3579999999999999873
No 138
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=92.78 E-value=0.16 Score=48.53 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=19.8
Q ss_pred CCceEEEEccCCccHHHHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE 99 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~ 99 (499)
.+..+++.||+|+|||+.+.+...
T Consensus 122 ~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 122 ASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp ESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 467789999999999998876554
No 139
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=92.63 E-value=0.11 Score=47.01 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=28.0
Q ss_pred cCCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHH
Q 010836 75 KVRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLR 111 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~r 111 (499)
..+..+++.||+|+|||+.+++.+. .+.+++++.|..
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 4578899999999999999876553 345778887653
No 140
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=92.61 E-value=0.092 Score=50.04 Aligned_cols=24 Identities=33% Similarity=0.479 Sum_probs=18.7
Q ss_pred CCceEEEEccCCccHHHHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE 99 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~ 99 (499)
+++.++|+||||||||..+.....
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCcCCHHHHHHHHHH
Confidence 456789999999999977655443
No 141
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.54 E-value=0.21 Score=50.49 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=17.7
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~ 96 (499)
..+.+++.||+|+|||+.+-.
T Consensus 166 ~~~~vLL~GppGtGKT~lA~a 186 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKA 186 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 357899999999999998743
No 142
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.47 E-value=0.091 Score=51.44 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=15.3
Q ss_pred ceEEEEccCCccHHHHH
Q 010836 78 KVILHVGPTNSGKTHQA 94 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~ 94 (499)
+.+++.||+|+|||..+
T Consensus 39 ~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp SEEEEESCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46899999999999986
No 143
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.45 E-value=0.32 Score=48.08 Aligned_cols=20 Identities=35% Similarity=0.471 Sum_probs=17.2
Q ss_pred CceEEEEccCCccHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~ 96 (499)
.+.+++.||+|+|||+.|-.
T Consensus 182 prGvLL~GPPGTGKTllAkA 201 (405)
T 4b4t_J 182 PKGVILYGPPGTGKTLLARA 201 (405)
T ss_dssp CCCEEEESCSSSSHHHHHHH
T ss_pred CCceEEeCCCCCCHHHHHHH
Confidence 57899999999999987633
No 144
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=92.35 E-value=0.087 Score=55.53 Aligned_cols=91 Identities=13% Similarity=0.067 Sum_probs=58.6
Q ss_pred CCCchhc-cchHHHhcCCceEEEEccCCccHHHHHHHHHHc-CCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecc
Q 010836 61 DLTRPHT-WYPLARKKVRKVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE 138 (499)
Q Consensus 61 ~l~~~q~-~~~~~~~~~~~~vli~apTGsGKT~~~l~~l~~-~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~ 138 (499)
.+|.-|. ++..+........++.|+-|.|||.+.-..+.. ..++++++|+.+-+..+.+...+ .
T Consensus 175 ~~T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~~~l~~~~~~---~----------- 240 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKASTDVLAQFAGE---K----------- 240 (671)
T ss_dssp SCCHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSCHHHHHHHGG---G-----------
T ss_pred CCCHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHHHHHHHHhhC---C-----------
Confidence 5676777 776664444567899999999999875222211 24678889998877655544322 0
Q ss_pred cCCCceEEEceee-ccccCCccEEEEecCcccC
Q 010836 139 VDGAKHRAVTVEM-ADVVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 139 ~~~~~~iv~T~e~-~~~l~~~~~iViDEah~~~ 170 (499)
+-++.|+. .......+++|||||=.+.
T Consensus 241 -----i~~~~Pd~~~~~~~~~dlliVDEAAaIp 268 (671)
T 2zpa_A 241 -----FRFIAPDALLASDEQADWLVVDEAAAIP 268 (671)
T ss_dssp -----CCBCCHHHHHHSCCCCSEEEEETGGGSC
T ss_pred -----eEEeCchhhhhCcccCCEEEEEchhcCC
Confidence 11222321 2344568999999998885
No 145
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.34 E-value=0.35 Score=47.35 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=15.2
Q ss_pred eEEEEccCCccHHHHH
Q 010836 79 VILHVGPTNSGKTHQA 94 (499)
Q Consensus 79 ~vli~apTGsGKT~~~ 94 (499)
.+++.||+|+|||+.+
T Consensus 46 ~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL 61 (389)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 8999999999999996
No 146
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.27 E-value=0.17 Score=48.34 Aligned_cols=20 Identities=25% Similarity=0.072 Sum_probs=16.6
Q ss_pred CceEEEEccCCccHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~ 96 (499)
....++.||.|+|||..+..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~ 37 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLE 37 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45789999999999988644
No 147
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.24 E-value=0.15 Score=52.55 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=18.6
Q ss_pred CceEEEEccCCccHHHHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALSRLE 99 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~l~ 99 (499)
.+.++++||+|+|||+.+-....
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~ 99 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQ 99 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 47899999999999998744433
No 148
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.22 E-value=0.37 Score=48.24 Aligned_cols=20 Identities=40% Similarity=0.493 Sum_probs=17.2
Q ss_pred CceEEEEccCCccHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~ 96 (499)
.+-++++||+|+|||+.+-.
T Consensus 215 prGvLL~GPPGtGKTllAkA 234 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKA 234 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHH
Confidence 68899999999999988643
No 149
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=91.94 E-value=0.11 Score=46.06 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=21.2
Q ss_pred cCCceEEEEccCCccHHHHHHHHHHc
Q 010836 75 KVRKVILHVGPTNSGKTHQALSRLES 100 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l~~l~~ 100 (499)
..++.+++.||||+|||..++.....
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHh
Confidence 35888999999999999887765544
No 150
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=91.74 E-value=0.37 Score=46.12 Aligned_cols=20 Identities=35% Similarity=0.454 Sum_probs=15.6
Q ss_pred ceEEEEccCCccHHHHHHHH
Q 010836 78 KVILHVGPTNSGKTHQALSR 97 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l~~ 97 (499)
+.+++.||+|+|||..+-..
T Consensus 49 ~~~L~~G~~G~GKT~la~~l 68 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVAKAL 68 (324)
T ss_dssp SEEEECSSTTSSHHHHHHHH
T ss_pred eEEEeeCcCCCCHHHHHHHH
Confidence 55677888999999987443
No 151
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=91.60 E-value=0.13 Score=49.52 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=17.6
Q ss_pred CceEEEEccCCccHHHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALSRL 98 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~l 98 (499)
++.++|+||||||||..+....
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA 61 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLA 61 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 4689999999999997765433
No 152
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=91.41 E-value=0.097 Score=43.82 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=17.5
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+.++++.||+|+|||+.+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 35788999999999999886
No 153
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.25 E-value=0.11 Score=45.26 Aligned_cols=20 Identities=25% Similarity=0.557 Sum_probs=17.7
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..++.++++||+|||||+.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45789999999999999885
No 154
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=90.83 E-value=0.11 Score=43.50 Aligned_cols=20 Identities=20% Similarity=0.125 Sum_probs=17.3
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+++.||+|+|||+.+
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 34678999999999999876
No 155
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=90.78 E-value=0.089 Score=50.96 Aligned_cols=18 Identities=11% Similarity=0.095 Sum_probs=15.7
Q ss_pred ceEEEEccCCccHHHHHH
Q 010836 78 KVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l 95 (499)
+.+++.||.|+|||..+.
T Consensus 25 ~a~L~~G~~G~GKt~~a~ 42 (334)
T 1a5t_A 25 HALLIQALPGMGDDALIY 42 (334)
T ss_dssp SEEEEECCTTSCHHHHHH
T ss_pred eeEEEECCCCchHHHHHH
Confidence 468999999999999863
No 156
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.77 E-value=0.27 Score=47.69 Aligned_cols=15 Identities=33% Similarity=0.711 Sum_probs=14.3
Q ss_pred EEEEccCCccHHHHH
Q 010836 80 ILHVGPTNSGKTHQA 94 (499)
Q Consensus 80 vli~apTGsGKT~~~ 94 (499)
+++.||+|+|||+.+
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 899999999999996
No 157
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=90.29 E-value=0.21 Score=47.52 Aligned_cols=22 Identities=45% Similarity=0.570 Sum_probs=17.3
Q ss_pred CceEEEEccCCccHHHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALSRL 98 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~l 98 (499)
.+.++++||||||||..+....
T Consensus 10 ~~~i~i~GptgsGKt~la~~La 31 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELR 31 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCccCHHHHHHHHH
Confidence 4578899999999997765433
No 158
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=90.25 E-value=0.15 Score=43.94 Aligned_cols=21 Identities=19% Similarity=0.339 Sum_probs=17.5
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~ 96 (499)
.++.++++|+.|||||+++-.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~ 22 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRC 22 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHH
Confidence 357899999999999998733
No 159
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=89.79 E-value=0.19 Score=59.51 Aligned_cols=79 Identities=22% Similarity=0.274 Sum_probs=48.0
Q ss_pred CCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEce--
Q 010836 76 VRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTV-- 149 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l----~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~-- 149 (499)
.+++++++||+|+|||+.+.+.+ ..+.+++|+...-.+.... .+.+|+.+.- +.+..+
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~---a~~~G~dl~~-------------l~v~~~~~ 1489 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDN-------------LLCSQPDT 1489 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH---HHHTTCCTTT-------------CEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH---HHHcCCCchh-------------ceeecCCh
Confidence 48999999999999999975543 3457888885443222222 3344543321 122222
Q ss_pred -e----ecccc---CCccEEEEecCcccC
Q 010836 150 -E----MADVV---SDYDCAVIDEIQMLG 170 (499)
Q Consensus 150 -e----~~~~l---~~~~~iViDEah~~~ 170 (499)
| .+..+ ..+++|||||+.-+.
T Consensus 1490 ~E~~l~~~~~lvr~~~~~lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1490 GEQALEICDALARSGAVDVIVVDSVAALT 1518 (2050)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred HHHHHHHHHHHHhcCCCCEEEEcChhHhc
Confidence 1 11222 678999999997543
No 160
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=89.78 E-value=0.16 Score=44.26 Aligned_cols=43 Identities=28% Similarity=0.411 Sum_probs=28.5
Q ss_pred EEEEccCCccHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHH
Q 010836 80 ILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLN 122 (499)
Q Consensus 80 vli~apTGsGKT~~~l~~l~~~~~~l~l~P~r~La~q~~~~l~ 122 (499)
++|.|++|||||..+.+....+.+++|+..-...-.++.+++.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~~~~~~yiaT~~~~d~e~~~rI~ 44 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGDAPQVLYIATSQILDDEMAARIQ 44 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCSCSSEEEEECCCC------CHHH
T ss_pred EEEECCCCCcHHHHHHHHHhcCCCeEEEecCCCCCHHHHHHHH
Confidence 6899999999999998777665578999764433344444444
No 161
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=89.75 E-value=0.28 Score=44.60 Aligned_cols=50 Identities=24% Similarity=0.266 Sum_probs=33.8
Q ss_pred CCceEEEEccCCccHHHHHHHHH----HcCCCEEEEccHHHHHHHHHHHHHhcCC
Q 010836 76 VRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCGPLRLLAWEVAKRLNKANV 126 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l----~~~~~~l~l~P~r~La~q~~~~l~~~g~ 126 (499)
.+..+++.||+|+|||+.+++.+ ..+++++|+.-. ....++.+++...|.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e-~~~~~~~~~~~~~g~ 75 (247)
T 2dr3_A 22 ERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE-EHPVQVRQNMAQFGW 75 (247)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS-SCHHHHHHHHHTTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc-CCHHHHHHHHHHcCC
Confidence 48899999999999999975543 345678887322 123555666655543
No 162
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=89.74 E-value=0.17 Score=45.19 Aligned_cols=20 Identities=25% Similarity=0.305 Sum_probs=17.5
Q ss_pred CCceEEEEccCCccHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l 95 (499)
.++.++++||+|||||+.+-
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~ 26 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVRE 26 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHH
T ss_pred CCcEEEEECcCCCCHHHHHH
Confidence 47889999999999998863
No 163
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=89.26 E-value=0.19 Score=43.81 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=16.5
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
++..+++.|+.|||||+++
T Consensus 2 ~~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp -CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3678999999999999986
No 164
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=89.23 E-value=0.2 Score=44.37 Aligned_cols=20 Identities=25% Similarity=0.571 Sum_probs=17.8
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
+.++.++++||+|+|||+..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEECcCCCCHHHHH
Confidence 56899999999999999875
No 165
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=88.91 E-value=0.35 Score=46.46 Aligned_cols=51 Identities=16% Similarity=0.132 Sum_probs=33.1
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc----------CCCEEEEccHHHH-HHHHHHHHHhcCC
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLES----------SSSGIYCGPLRLL-AWEVAKRLNKANV 126 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~----------~~~~l~l~P~r~L-a~q~~~~l~~~g~ 126 (499)
.+..+++.||+|+|||..+++.+.. +++++|+.-...+ ..++.+++..+|+
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~ 167 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGL 167 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTC
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4789999999999999998776543 4567888332211 2334444445554
No 166
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=88.79 E-value=0.29 Score=44.66 Aligned_cols=49 Identities=18% Similarity=0.225 Sum_probs=32.7
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----c-CCCEEEEccHHHHHHHHHHHHHhcC
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE----S-SSSGIYCGPLRLLAWEVAKRLNKAN 125 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~----~-~~~~l~l~P~r~La~q~~~~l~~~g 125 (499)
.+..+++.|++|+|||..+++.+. + +..++|+.-. .-..++.+++...+
T Consensus 29 ~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E-~~~~~~~~~~~~~~ 82 (251)
T 2zts_A 29 EGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE-ERARDLRREMASFG 82 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS-SCHHHHHHHHHTTT
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc-CCHHHHHHHHHHcC
Confidence 478999999999999999876543 2 4567776322 22445556665543
No 167
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=88.78 E-value=0.21 Score=43.34 Aligned_cols=19 Identities=26% Similarity=0.267 Sum_probs=16.8
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
.+.+++.|++|||||+++-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5689999999999999873
No 168
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=88.73 E-value=0.2 Score=46.64 Aligned_cols=20 Identities=40% Similarity=0.592 Sum_probs=17.8
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..++++||||||||+..
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHH
T ss_pred CCCCEEEEECCCCccHHHHH
Confidence 46889999999999999984
No 169
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=88.64 E-value=0.56 Score=50.82 Aligned_cols=16 Identities=44% Similarity=0.711 Sum_probs=14.7
Q ss_pred eEEEEccCCccHHHHH
Q 010836 79 VILHVGPTNSGKTHQA 94 (499)
Q Consensus 79 ~vli~apTGsGKT~~~ 94 (499)
.+++.||||+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6999999999999875
No 170
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=88.53 E-value=0.24 Score=43.82 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=17.2
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.++.+++.|++|||||+++
T Consensus 24 ~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHH
Confidence 4678999999999999996
No 171
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=88.48 E-value=0.22 Score=42.49 Aligned_cols=26 Identities=35% Similarity=0.335 Sum_probs=18.8
Q ss_pred ceEEEEccCCccHHHHHHHHHHcCCCE
Q 010836 78 KVILHVGPTNSGKTHQALSRLESSSSG 104 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l~~l~~~~~~ 104 (499)
..+++.|++|||||+++-.. ...+..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~ 27 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAK 27 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCE
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCc
Confidence 46889999999999997443 433433
No 172
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=88.30 E-value=0.25 Score=43.64 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+.+.||+|||||+.+
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 5788999999999999875
No 173
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=88.30 E-value=0.63 Score=51.12 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=16.6
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
...+++++||+|+|||..+
T Consensus 190 ~~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp SCCCCEEEECTTSCHHHHH
T ss_pred CCCceEEEcCCCCCHHHHH
Confidence 4568999999999999885
No 174
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=88.23 E-value=0.35 Score=46.31 Aligned_cols=20 Identities=40% Similarity=0.654 Sum_probs=16.4
Q ss_pred CceEEEEccCCccHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~ 96 (499)
.+.++++||||||||+.+..
T Consensus 5 ~~~i~i~GptGsGKTtla~~ 24 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMA 24 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 35789999999999977643
No 175
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=88.09 E-value=0.24 Score=43.23 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=17.5
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+++.||.|||||+.+
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 45788999999999999875
No 176
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=87.99 E-value=0.26 Score=47.22 Aligned_cols=27 Identities=15% Similarity=0.099 Sum_probs=21.7
Q ss_pred cchHHHhcCCceEEEEccCCccHHHHH
Q 010836 68 WYPLARKKVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 68 ~~~~~~~~~~~~vli~apTGsGKT~~~ 94 (499)
..+.+....+.++++.||+|+|||.++
T Consensus 36 L~~~i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 36 IYDSLMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred HHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 344555557889999999999999996
No 177
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=87.83 E-value=0.28 Score=43.31 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=17.5
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+++.||+|||||+.+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45788999999999999875
No 178
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=87.66 E-value=0.35 Score=56.40 Aligned_cols=79 Identities=20% Similarity=0.235 Sum_probs=55.8
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEceee
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTVEM 151 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~e~ 151 (499)
+++.+.+.||.|||||+.+++.+. .++.++|+.+--+|.... ++++|+.+.- +++.-|+.
T Consensus 1430 rg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~---~~~~Gv~~~~-------------l~~~~p~~ 1493 (1706)
T 3cmw_A 1430 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKLGVDIDN-------------LLCSQPDT 1493 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHTTCCGGG-------------CEEECCSS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH---HHHcCCCHHH-------------eEEeCCCc
Confidence 369999999999999999877663 467889997766665554 5566665422 44555522
Q ss_pred c-------c---ccCCccEEEEecCcccC
Q 010836 152 A-------D---VVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 152 ~-------~---~l~~~~~iViDEah~~~ 170 (499)
- + --..+++||||.+-.+.
T Consensus 1494 ~e~~l~~~~~~~~s~~~~~vvvDsv~al~ 1522 (1706)
T 3cmw_A 1494 GEQALEICDALARSGAVDVIVVDSVAALT 1522 (1706)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred HHHHHHHHHHHHHcCCCCEEEEccHHhCC
Confidence 1 1 12679999999998775
No 179
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=87.63 E-value=0.24 Score=43.84 Aligned_cols=19 Identities=21% Similarity=0.424 Sum_probs=15.8
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.++.+.++||+|||||+..
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3678999999999999985
No 180
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=87.57 E-value=0.32 Score=44.97 Aligned_cols=16 Identities=56% Similarity=0.657 Sum_probs=14.1
Q ss_pred eEEEEccCCccHHHHH
Q 010836 79 VILHVGPTNSGKTHQA 94 (499)
Q Consensus 79 ~vli~apTGsGKT~~~ 94 (499)
.++++||||||||+.+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 5789999999999765
No 181
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=87.52 E-value=0.27 Score=42.92 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=16.8
Q ss_pred CCceEEEEccCCccHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l 95 (499)
.+..+++.|++|||||+++-
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~ 21 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCA 21 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHH
Confidence 35679999999999999973
No 182
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=87.42 E-value=0.28 Score=43.54 Aligned_cols=19 Identities=21% Similarity=0.298 Sum_probs=16.8
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.++.++++||+|||||+.+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp CCCCEEEECCTTSCHHHHH
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 4788999999999999875
No 183
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=87.42 E-value=0.26 Score=50.68 Aligned_cols=19 Identities=37% Similarity=0.371 Sum_probs=17.1
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+.+++++||||||||+..
T Consensus 259 ~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp TTCCEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5888999999999999874
No 184
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=87.39 E-value=0.91 Score=42.96 Aligned_cols=33 Identities=24% Similarity=0.244 Sum_probs=22.4
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcCCCEEEEc
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLESSSSGIYCG 108 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~~~~~l~l~ 108 (499)
.++.+++.||+|+|||+.+-......+...+.+
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v 80 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISI 80 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEE
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEE
Confidence 467899999999999999743333333444333
No 185
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=87.16 E-value=0.31 Score=42.17 Aligned_cols=21 Identities=29% Similarity=0.264 Sum_probs=17.9
Q ss_pred cCCceEEEEccCCccHHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l 95 (499)
+.++.+++.|++|||||+++-
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHH
Confidence 346789999999999999864
No 186
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.15 E-value=0.6 Score=42.46 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=24.4
Q ss_pred cCCceEEEEccCCccHHHHHHH----HH-HcCCCEEEE
Q 010836 75 KVRKVILHVGPTNSGKTHQALS----RL-ESSSSGIYC 107 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l~----~l-~~~~~~l~l 107 (499)
..+..+.+.||+|||||+.+.. .+ .....++++
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~ 65 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFV 65 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 3589999999999999998632 22 445566666
No 187
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=87.15 E-value=0.3 Score=42.04 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=17.9
Q ss_pred CCceEEEEccCCccHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l 95 (499)
++..+.++||+|||||+.+-
T Consensus 8 ~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHH
Confidence 57889999999999999864
No 188
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=86.99 E-value=0.29 Score=42.75 Aligned_cols=18 Identities=28% Similarity=0.540 Sum_probs=15.5
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
++.+.+.||+|||||+..
T Consensus 1 ~~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCCEEEESSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 356889999999999885
No 189
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=86.65 E-value=0.35 Score=43.89 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=18.1
Q ss_pred cchHHHhcCCceEEEEccCCccHHHHHH
Q 010836 68 WYPLARKKVRKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 68 ~~~~~~~~~~~~vli~apTGsGKT~~~l 95 (499)
+.|..+......+++.|++|||||+++-
T Consensus 7 ~~p~~~~~~~~~I~l~G~~GsGKsT~a~ 34 (233)
T 1ak2_A 7 AEPVPESPKGVRAVLLGPPGAGKGTQAP 34 (233)
T ss_dssp -------CCCCEEEEECCTTSSHHHHHH
T ss_pred CCCCCCCCCCeEEEEECCCCCCHHHHHH
Confidence 3344433456789999999999999973
No 190
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=86.60 E-value=0.36 Score=42.02 Aligned_cols=19 Identities=37% Similarity=0.370 Sum_probs=17.1
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
++..+++.|++|||||+++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999986
No 191
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=86.54 E-value=0.34 Score=43.67 Aligned_cols=21 Identities=38% Similarity=0.425 Sum_probs=17.8
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~ 96 (499)
+.+.+++.||+||||++++-.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 467889999999999999743
No 192
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=86.49 E-value=1.6 Score=47.09 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=23.5
Q ss_pred CceEEEEccCCccHHHHHHHHHHcCCCEEEEc
Q 010836 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCG 108 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~l~~~~~~l~l~ 108 (499)
.+.+++.||+|+|||+.+-....+.+..++.+
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v 542 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFISI 542 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCEEEEC
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCceEEe
Confidence 56799999999999988755555555555543
No 193
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=86.46 E-value=0.33 Score=41.68 Aligned_cols=19 Identities=42% Similarity=0.562 Sum_probs=16.2
Q ss_pred ceEEEEccCCccHHHHHHH
Q 010836 78 KVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l~ 96 (499)
..+++.|++|||||+.+-.
T Consensus 3 ~~I~i~G~~GsGKST~a~~ 21 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWARE 21 (181)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHH
Confidence 4689999999999998743
No 194
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=86.44 E-value=0.48 Score=45.70 Aligned_cols=19 Identities=47% Similarity=0.690 Sum_probs=16.0
Q ss_pred ceEEEEccCCccHHHHHHH
Q 010836 78 KVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l~ 96 (499)
+.++|+||||||||+.+..
T Consensus 8 ~lI~I~GptgSGKTtla~~ 26 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIE 26 (340)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHH
Confidence 5789999999999987643
No 195
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=86.35 E-value=0.42 Score=47.16 Aligned_cols=20 Identities=35% Similarity=0.611 Sum_probs=16.0
Q ss_pred CceEEEEccCCccHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~ 96 (499)
.+.++|+||||||||..+..
T Consensus 2 ~~~i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHH
Confidence 35688999999999976543
No 196
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=86.34 E-value=0.44 Score=45.68 Aligned_cols=24 Identities=25% Similarity=0.160 Sum_probs=20.8
Q ss_pred CCceEEEEccCCccHHHHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE 99 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~ 99 (499)
.+..+++.||+|+|||..+++.+.
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999877664
No 197
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=86.31 E-value=0.36 Score=41.42 Aligned_cols=20 Identities=25% Similarity=0.386 Sum_probs=17.3
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+++.|+.|||||+.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHH
Confidence 34678999999999999885
No 198
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=86.30 E-value=0.34 Score=41.45 Aligned_cols=18 Identities=33% Similarity=0.656 Sum_probs=16.2
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
+..+++.||.|||||+.+
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567999999999999986
No 199
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=86.30 E-value=0.67 Score=41.97 Aligned_cols=24 Identities=17% Similarity=0.137 Sum_probs=20.2
Q ss_pred CCceEEEEccCCccHHHHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE 99 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~ 99 (499)
.+..+.+.||+|+|||+.+.+.+.
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 488999999999999999865443
No 200
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=86.17 E-value=2.1 Score=46.20 Aligned_cols=80 Identities=11% Similarity=0.230 Sum_probs=62.8
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcC---CCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecch-hhccccc-cccEE
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA-IGMGLNL-NISRI 312 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~---~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~-~~~Gidi-pv~~V 312 (499)
..++++.. ++.-+.+.++.+.+.. ..++..+||+++..+|..+.+.+.+ |..+|+|+|.. +...+++ .++.|
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~--g~~~IvVgT~~ll~~~~~~~~l~lV 494 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRN--GQIDVVIGTHALIQEDVHFKNLGLV 494 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHS--SCCCEEEECTTHHHHCCCCSCCCEE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECHHHHhhhhhccCCceE
Confidence 44566666 8888888888776653 3489999999999999999999998 99999999974 4455777 48999
Q ss_pred EEcccccc
Q 010836 313 IFSTMKKF 320 (499)
Q Consensus 313 I~~~~~~~ 320 (499)
|......|
T Consensus 495 VIDEaHr~ 502 (780)
T 1gm5_A 495 IIDEQHRF 502 (780)
T ss_dssp EEESCCCC
T ss_pred Eecccchh
Confidence 87766553
No 201
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=86.11 E-value=0.64 Score=41.36 Aligned_cols=32 Identities=31% Similarity=0.234 Sum_probs=24.8
Q ss_pred CCceEEEEccCCccHHHHHHHHH-HcCCCEEEE
Q 010836 76 VRKVILHVGPTNSGKTHQALSRL-ESSSSGIYC 107 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l-~~~~~~l~l 107 (499)
.+..+++.||+|+|||+.+.+.+ ..+++++|+
T Consensus 19 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i 51 (220)
T 2cvh_A 19 PGVLTQVYGPYASGKTTLALQTGLLSGKKVAYV 51 (220)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEE
Confidence 47899999999999999975444 344567777
No 202
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=86.06 E-value=0.36 Score=41.10 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=15.0
Q ss_pred eEEEEccCCccHHHHHH
Q 010836 79 VILHVGPTNSGKTHQAL 95 (499)
Q Consensus 79 ~vli~apTGsGKT~~~l 95 (499)
.+++.|+.|||||+++-
T Consensus 3 ~i~l~G~~GsGKsT~~~ 19 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAA 19 (173)
T ss_dssp EEEEECSSSSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 58899999999999863
No 203
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=85.94 E-value=0.41 Score=42.28 Aligned_cols=19 Identities=32% Similarity=0.433 Sum_probs=17.2
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+++.||.|||||+.+
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4789999999999999986
No 204
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=85.94 E-value=0.32 Score=42.15 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=17.1
Q ss_pred CCceEEEEccCCccHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l 95 (499)
.+..+++.|+.|||||+++-
T Consensus 3 ~g~~I~l~G~~GsGKST~~~ 22 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQAS 22 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35679999999999999973
No 205
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=85.94 E-value=0.45 Score=45.23 Aligned_cols=29 Identities=24% Similarity=0.454 Sum_probs=22.3
Q ss_pred CCceEEEEccCCccHHHHH--HHHHHcCCCEE
Q 010836 76 VRKVILHVGPTNSGKTHQA--LSRLESSSSGI 105 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~--l~~l~~~~~~l 105 (499)
.++.+.++||+|||||+.. +..+. .|+++
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~-~G~I~ 155 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL-GGSVL 155 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH-TCEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc-CceEE
Confidence 5889999999999999985 44444 55554
No 206
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=85.74 E-value=0.53 Score=51.74 Aligned_cols=17 Identities=47% Similarity=0.671 Sum_probs=15.4
Q ss_pred ceEEEEccCCccHHHHH
Q 010836 78 KVILHVGPTNSGKTHQA 94 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~ 94 (499)
..+++.||||+|||+.+
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47999999999999886
No 207
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=85.72 E-value=0.57 Score=47.01 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=30.6
Q ss_pred cCCceEEEEccCCccHHHHH----HHHHHcCCCEEEEccHHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA----LSRLESSSSGIYCGPLRLLAW 115 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~----l~~l~~~~~~l~l~P~r~La~ 115 (499)
..+.++++.|+||||||... .+.+..+..++++=|..++..
T Consensus 51 ~~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 51 AEPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred cCcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 34789999999999999985 233344567777888877754
No 208
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=85.69 E-value=0.82 Score=40.93 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=24.9
Q ss_pred CCceEEEEccCCccHHHHHHHHH----HcCCCEEEEc
Q 010836 76 VRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCG 108 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l----~~~~~~l~l~ 108 (499)
.+..+++.||+|+|||+.+...+ ..+++++|+.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 47899999999999998864322 3466777773
No 209
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=85.68 E-value=1.1 Score=38.71 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=14.7
Q ss_pred eEEEEccCCccHHHHH
Q 010836 79 VILHVGPTNSGKTHQA 94 (499)
Q Consensus 79 ~vli~apTGsGKT~~~ 94 (499)
.+++.|+.|||||+++
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999986
No 210
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=85.64 E-value=0.35 Score=47.30 Aligned_cols=20 Identities=40% Similarity=0.577 Sum_probs=17.7
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..++++||||||||+..
T Consensus 173 ~~G~~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTLM 192 (361)
T ss_dssp HTTCCEEEEESSSSCHHHHH
T ss_pred hcCCEEEEECCCCCCHHHHH
Confidence 36899999999999999874
No 211
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=85.54 E-value=1.6 Score=41.50 Aligned_cols=87 Identities=18% Similarity=0.203 Sum_probs=44.3
Q ss_pred CCceEEEEccCCccHHHHH--HH-HH-HcCCCEEEE-c-cHHHHH-HHHHHHHHhcCCceeEeeCCeecccCCCceEEEc
Q 010836 76 VRKVILHVGPTNSGKTHQA--LS-RL-ESSSSGIYC-G-PLRLLA-WEVAKRLNKANVSCDLITGQEREEVDGAKHRAVT 148 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~--l~-~l-~~~~~~l~l-~-P~r~La-~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T 148 (499)
.++.+++.||+|+|||+.+ +. .+ ..+++++++ . +.|..+ .|........|+++. .... ...+.-+..
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~--~~~s----~~~~~~v~~ 176 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVI--SHSE----GADPAAVAF 176 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEE--CCST----TCCHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEE--ecCC----ccCHHHHHH
Confidence 4678999999999999985 22 22 235567665 2 334333 333333334455431 1110 000000000
Q ss_pred eeec-cccCCccEEEEecCcc
Q 010836 149 VEMA-DVVSDYDCAVIDEIQM 168 (499)
Q Consensus 149 ~e~~-~~l~~~~~iViDEah~ 168 (499)
..+. ....+++++|+||+-.
T Consensus 177 ~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 177 DAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHHHHHTTCSEEEEEECCC
T ss_pred HHHHHHHhcCCCEEEEECCCc
Confidence 0011 1236789999999964
No 212
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=85.48 E-value=0.41 Score=41.67 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=16.3
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
+..+++.|+.|||||+++
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 568899999999999986
No 213
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=85.41 E-value=0.41 Score=45.33 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=16.6
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+++.||+|+|||+.+
T Consensus 66 ~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCEEEEEECTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3568999999999999886
No 214
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=85.39 E-value=0.43 Score=42.25 Aligned_cols=19 Identities=37% Similarity=0.370 Sum_probs=16.7
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
++..+++.|+.|||||+++
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 4678999999999999875
No 215
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=85.38 E-value=0.43 Score=43.88 Aligned_cols=20 Identities=45% Similarity=0.491 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l 95 (499)
..+.+++.||+|+|||+.+-
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35789999999999998863
No 216
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=85.24 E-value=0.46 Score=47.65 Aligned_cols=87 Identities=24% Similarity=0.198 Sum_probs=44.5
Q ss_pred ceEEEEccCCccHHHHHHH---HH-HcCCCEEEE--ccHHHHHHHHHHHH-HhcCCceeEeeCCeecccCCCceEEEcee
Q 010836 78 KVILHVGPTNSGKTHQALS---RL-ESSSSGIYC--GPLRLLAWEVAKRL-NKANVSCDLITGQEREEVDGAKHRAVTVE 150 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l~---~l-~~~~~~l~l--~P~r~La~q~~~~l-~~~g~~~~~~~g~~~~~~~~~~~iv~T~e 150 (499)
..++++|++|+|||+.+.. .+ ..+.+++++ =|.+..+.++.+.+ ...|+++.-..+..... ..+ ..+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp---~~i---~~~ 173 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSP---VDI---VKE 173 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSS---STT---HHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCH---HHH---HHH
Confidence 5789999999999998632 22 234667666 23332222222222 23454443321111000 000 011
Q ss_pred eccccCCccEEEEecCcccC
Q 010836 151 MADVVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 151 ~~~~l~~~~~iViDEah~~~ 170 (499)
.+..+..++++|||.+-...
T Consensus 174 ~l~~~~~~D~vIIDT~G~~~ 193 (432)
T 2v3c_C 174 GMEKFKKADVLIIDTAGRHK 193 (432)
T ss_dssp HHHTTSSCSEEEEECCCSCS
T ss_pred HHHHhhCCCEEEEcCCCCcc
Confidence 22223789999999997653
No 217
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=85.20 E-value=0.39 Score=47.21 Aligned_cols=20 Identities=40% Similarity=0.592 Sum_probs=17.7
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..++++||||||||+..
T Consensus 134 ~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 45788999999999999985
No 218
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=85.12 E-value=0.46 Score=46.32 Aligned_cols=20 Identities=40% Similarity=0.602 Sum_probs=17.4
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+++.||||||||+..
T Consensus 121 ~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45678999999999999884
No 219
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=85.06 E-value=0.45 Score=42.00 Aligned_cols=20 Identities=35% Similarity=0.350 Sum_probs=17.7
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+.+.||.|||||+.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 35789999999999999985
No 220
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=84.86 E-value=0.45 Score=42.79 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=17.2
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..++.+.++||+|||||+..
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35889999999999999875
No 221
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=84.81 E-value=0.48 Score=41.33 Aligned_cols=19 Identities=37% Similarity=0.504 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+++.|+.|||||+++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999996
No 222
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=84.76 E-value=0.46 Score=43.75 Aligned_cols=18 Identities=50% Similarity=0.660 Sum_probs=15.9
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
.+.+++.||+|+|||+.+
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 467999999999999886
No 223
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=84.63 E-value=0.42 Score=44.49 Aligned_cols=20 Identities=40% Similarity=0.424 Sum_probs=17.2
Q ss_pred CCceEEEEccCCccHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l 95 (499)
..+.+++.||+|+|||+.+-
T Consensus 63 ~~~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHH
Confidence 35789999999999999863
No 224
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=84.61 E-value=0.73 Score=40.32 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=14.6
Q ss_pred ceEEEEccCCccHHHHH
Q 010836 78 KVILHVGPTNSGKTHQA 94 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~ 94 (499)
+-++++||+|+|||+..
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45899999999999764
No 225
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=84.60 E-value=0.55 Score=45.71 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=27.1
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccH
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPL 110 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~ 110 (499)
.+..+++.||+|+|||+.+++.+. .+++++|+...
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 478999999999999999765443 45678888443
No 226
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=84.30 E-value=0.47 Score=43.92 Aligned_cols=19 Identities=32% Similarity=0.475 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+++.||+|+|||+.+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 4678999999999999886
No 227
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=84.27 E-value=0.46 Score=42.23 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=17.3
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+.|.||+|||||+.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34788999999999999875
No 228
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=84.13 E-value=0.47 Score=47.35 Aligned_cols=20 Identities=40% Similarity=0.644 Sum_probs=17.3
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+++.||||||||+..
T Consensus 165 ~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHH
T ss_pred hcCCeEEEECCCCCCHHHHH
Confidence 45778999999999999884
No 229
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=84.12 E-value=0.55 Score=41.67 Aligned_cols=20 Identities=30% Similarity=0.569 Sum_probs=17.3
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..++.+.+.||+|||||+..
T Consensus 18 ~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 18 AVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp -CCCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45889999999999999875
No 230
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=84.08 E-value=0.81 Score=44.31 Aligned_cols=33 Identities=15% Similarity=0.150 Sum_probs=26.2
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc----------CCCEEEEc
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLES----------SSSGIYCG 108 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~----------~~~~l~l~ 108 (499)
.+..+++.||+|+|||..+++.+.. +++++|+.
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~ 163 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFID 163 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEE
Confidence 4788999999999999998766542 45678884
No 231
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=84.02 E-value=0.57 Score=41.18 Aligned_cols=19 Identities=37% Similarity=0.434 Sum_probs=16.8
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+++.|+.|||||+++
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3678999999999999886
No 232
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=84.01 E-value=0.48 Score=46.25 Aligned_cols=19 Identities=53% Similarity=0.650 Sum_probs=17.1
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+++.||+|+|||+.+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999986
No 233
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=83.65 E-value=0.39 Score=43.47 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=13.2
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.++.+.+.||+|||||+.+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CCCEEEEECSCC----CHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5889999999999999885
No 234
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=83.56 E-value=0.54 Score=44.43 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=16.0
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
.+.+++.||+|+|||..+
T Consensus 36 p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CSEEEEEECTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467899999999999886
No 235
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=83.53 E-value=0.61 Score=42.03 Aligned_cols=20 Identities=15% Similarity=0.300 Sum_probs=17.0
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..++.++++||.|||||+..
T Consensus 14 ~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 35889999999999999874
No 236
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=83.52 E-value=0.56 Score=42.29 Aligned_cols=20 Identities=20% Similarity=0.159 Sum_probs=17.1
Q ss_pred CceEEEEccCCccHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~ 96 (499)
...+++.|++|||||+++-.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~ 26 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSR 26 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 46799999999999998743
No 237
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=83.52 E-value=1.1 Score=43.43 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=26.2
Q ss_pred CCceEEEEccCCccHHHHHHHHH----HcCCCEEEEc
Q 010836 76 VRKVILHVGPTNSGKTHQALSRL----ESSSSGIYCG 108 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l----~~~~~~l~l~ 108 (499)
.++.+++.||+|+|||+.+++.+ ..+++++|+.
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~ 96 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFID 96 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 47899999999999999976554 3456788883
No 238
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=83.48 E-value=0.49 Score=45.59 Aligned_cols=19 Identities=37% Similarity=0.468 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.++.+.++||||||||+..
T Consensus 170 ~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 170 IGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HTCCEEEEESTTSCHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4889999999999999864
No 239
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=83.44 E-value=0.56 Score=41.58 Aligned_cols=19 Identities=47% Similarity=0.303 Sum_probs=16.7
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
++..+.+.||+|||||+.+
T Consensus 5 ~~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CcEEEEEECCCCCCHHHHH
Confidence 4678899999999999985
No 240
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=83.34 E-value=0.58 Score=39.82 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.9
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
-+++++.|+.|||||+++
T Consensus 7 ~~~i~l~G~~GsGKSTva 24 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLA 24 (168)
T ss_dssp -CEEEEESCTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 478999999999999986
No 241
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=83.33 E-value=0.54 Score=44.37 Aligned_cols=19 Identities=53% Similarity=0.688 Sum_probs=16.8
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
....+++.||+|+|||+.+
T Consensus 49 ~~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3678999999999999886
No 242
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=83.23 E-value=0.85 Score=38.20 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=18.6
Q ss_pred CCceEEEEccCCccHHHH--HHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQ--ALSRLE 99 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~--~l~~l~ 99 (499)
.....++.||+|||||.. |+.+++
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999998 455444
No 243
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=83.21 E-value=0.53 Score=41.51 Aligned_cols=18 Identities=28% Similarity=0.398 Sum_probs=16.0
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
...+++.|+.|||||+++
T Consensus 18 ~~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SSCEEEECSTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 357999999999999986
No 244
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=83.16 E-value=0.59 Score=40.87 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=16.4
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
+..+++.|++|||||+++
T Consensus 12 ~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp SCEEEEEECTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 568999999999999997
No 245
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.10 E-value=0.9 Score=45.42 Aligned_cols=19 Identities=42% Similarity=0.440 Sum_probs=16.9
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
.+.++++||+|+|||+.+-
T Consensus 215 prGvLLyGPPGTGKTllAk 233 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLAR 233 (434)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHH
Confidence 6889999999999998763
No 246
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=83.02 E-value=0.65 Score=41.60 Aligned_cols=19 Identities=32% Similarity=0.503 Sum_probs=16.7
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+++.|+.|||||+++
T Consensus 3 ~~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567999999999999997
No 247
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=82.93 E-value=0.55 Score=44.28 Aligned_cols=21 Identities=29% Similarity=0.257 Sum_probs=17.6
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~ 96 (499)
.+..++++||.|||||+.+-.
T Consensus 32 ~~~livl~G~sGsGKSTla~~ 52 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSA 52 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 367899999999999988744
No 248
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=82.87 E-value=1 Score=39.06 Aligned_cols=18 Identities=28% Similarity=0.617 Sum_probs=15.7
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
+..+++.||.|||||+.+
T Consensus 2 g~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 456889999999999986
No 249
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=82.86 E-value=0.59 Score=41.67 Aligned_cols=20 Identities=30% Similarity=0.551 Sum_probs=16.2
Q ss_pred eEEEEccCCccHHHHHHHHH
Q 010836 79 VILHVGPTNSGKTHQALSRL 98 (499)
Q Consensus 79 ~vli~apTGsGKT~~~l~~l 98 (499)
.+++.||+||||++++-...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 47889999999999974433
No 250
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=82.80 E-value=2.1 Score=42.78 Aligned_cols=87 Identities=18% Similarity=0.140 Sum_probs=47.2
Q ss_pred CceEEEEccCCccHHHHHH---HHH-HcCCCEEEE--ccHHHHHHHHHHHHH-hcCCceeEeeCCeecccCCCceEEEce
Q 010836 77 RKVILHVGPTNSGKTHQAL---SRL-ESSSSGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRAVTV 149 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l---~~l-~~~~~~l~l--~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv~T~ 149 (499)
+..++++||+|+|||+.+. ..+ ..+++++++ -+.|.-+.+....+. ..|+++........ +.-++ .
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~d------p~~i~-~ 169 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQN------PIEIA-K 169 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSC------HHHHH-H
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCC------HHHHH-H
Confidence 6789999999999999952 222 345677665 245554544444444 34554322111000 00000 0
Q ss_pred eecccc--CCccEEEEecCcccC
Q 010836 150 EMADVV--SDYDCAVIDEIQMLG 170 (499)
Q Consensus 150 e~~~~l--~~~~~iViDEah~~~ 170 (499)
+.+... ..++++|||++-...
T Consensus 170 ~al~~a~~~~~DvvIIDTaGr~~ 192 (433)
T 3kl4_A 170 KGVDIFVKNKMDIIIVDTAGRHG 192 (433)
T ss_dssp HHHHHTTTTTCSEEEEEECCCSS
T ss_pred HHHHHHHhcCCCEEEEECCCCcc
Confidence 111122 478999999997643
No 251
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=82.73 E-value=1.2 Score=42.09 Aligned_cols=82 Identities=20% Similarity=0.214 Sum_probs=43.2
Q ss_pred CCceEEEEccCCccHHHHH--HH-HHH-cCC-CEEEE--ccHHHHHHHHHHHHH-hcCCceeEeeCCeecccCCCceEEE
Q 010836 76 VRKVILHVGPTNSGKTHQA--LS-RLE-SSS-SGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRAV 147 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~--l~-~l~-~~~-~~l~l--~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv~ 147 (499)
.++.++++||+|+|||+.+ +. .+. ..| +++++ -|.+..+.++...+. ..|+++... . +...+
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~--~------~~~~l-- 173 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVC--Y------TKEEF-- 173 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBC--S------SHHHH--
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEec--C------CHHHH--
Confidence 4778999999999999986 22 222 234 66665 234444444443333 234432110 0 00000
Q ss_pred ceeeccccCCccEEEEecCcc
Q 010836 148 TVEMADVVSDYDCAVIDEIQM 168 (499)
Q Consensus 148 T~e~~~~l~~~~~iViDEah~ 168 (499)
...+..+.+++++|+|.+-.
T Consensus 174 -~~al~~~~~~dlvIiDT~G~ 193 (296)
T 2px0_A 174 -QQAKELFSEYDHVFVDTAGR 193 (296)
T ss_dssp -HHHHHHGGGSSEEEEECCCC
T ss_pred -HHHHHHhcCCCEEEEeCCCC
Confidence 01112237789999996544
No 252
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=82.65 E-value=0.62 Score=41.13 Aligned_cols=17 Identities=41% Similarity=0.651 Sum_probs=15.1
Q ss_pred ceEEEEccCCccHHHHH
Q 010836 78 KVILHVGPTNSGKTHQA 94 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~ 94 (499)
..+++.||+|+|||..+
T Consensus 39 ~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 39 PHLLFSGPPGTGKTATA 55 (226)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999886
No 253
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=82.64 E-value=2 Score=50.30 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=25.5
Q ss_pred CCceEEEEccCCccHHHHHHHHH----HcCCCEEEE
Q 010836 76 VRKVILHVGPTNSGKTHQALSRL----ESSSSGIYC 107 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l----~~~~~~l~l 107 (499)
.+..+++.||+|+|||+.+++.. ..+++++|+
T Consensus 731 ~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~Vlyi 766 (1706)
T 3cmw_A 731 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI 766 (1706)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEE
Confidence 57899999999999999976543 345578887
No 254
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=82.62 E-value=0.69 Score=40.68 Aligned_cols=19 Identities=37% Similarity=0.571 Sum_probs=16.8
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+++.|+.|||||+++
T Consensus 19 ~~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp SCCEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567999999999999996
No 255
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=82.53 E-value=0.72 Score=40.98 Aligned_cols=20 Identities=30% Similarity=0.669 Sum_probs=16.6
Q ss_pred CceEEEEccCCccHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~ 96 (499)
++.+++.||.|+|||+.+..
T Consensus 58 kn~ili~GPPGtGKTt~a~a 77 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMS 77 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHH
Confidence 35699999999999988643
No 256
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=82.49 E-value=1.1 Score=38.58 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=23.0
Q ss_pred cCCceEEEEccCCccHHHHHHHHHHcC
Q 010836 75 KVRKVILHVGPTNSGKTHQALSRLESS 101 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l~~l~~~ 101 (499)
..++-+++.|+.|+|||+.++..+.++
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~rG 40 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALIDRG 40 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHHTT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 458899999999999999998877643
No 257
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=82.39 E-value=0.71 Score=40.83 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=16.7
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+++.|+.|||||+++
T Consensus 9 ~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp CSCEEEEEESTTSSHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHH
Confidence 4678999999999999875
No 258
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=82.39 E-value=0.66 Score=41.62 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=15.9
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
+..+.+.||+|||||+++
T Consensus 5 ~~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLC 22 (227)
T ss_dssp SCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 357899999999999986
No 259
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=82.33 E-value=0.69 Score=39.83 Aligned_cols=19 Identities=21% Similarity=0.240 Sum_probs=16.9
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
++..+++.|+.|||||+++
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4778999999999999885
No 260
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=82.31 E-value=0.67 Score=41.02 Aligned_cols=20 Identities=45% Similarity=0.343 Sum_probs=17.1
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+.+.|++|||||+.+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 34678899999999999876
No 261
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=82.27 E-value=0.7 Score=40.06 Aligned_cols=20 Identities=35% Similarity=0.331 Sum_probs=17.4
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+++.|+.|||||+++
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHH
Confidence 34778999999999999986
No 262
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=82.26 E-value=0.62 Score=45.31 Aligned_cols=18 Identities=33% Similarity=0.505 Sum_probs=16.4
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
++.+++.||+|+|||..+
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 468999999999999996
No 263
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=82.17 E-value=1.2 Score=43.85 Aligned_cols=37 Identities=19% Similarity=0.130 Sum_probs=26.6
Q ss_pred CCceEEEEccCCccHHHHHH----HHHHcCCCEEEEccHHH
Q 010836 76 VRKVILHVGPTNSGKTHQAL----SRLESSSSGIYCGPLRL 112 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l----~~l~~~~~~l~l~P~r~ 112 (499)
.+.++++.||||||||+..- +....+.+++++=|..+
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 47789999999999998852 23334567777766543
No 264
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=82.12 E-value=0.64 Score=41.38 Aligned_cols=17 Identities=35% Similarity=0.391 Sum_probs=14.9
Q ss_pred eEEEEccCCccHHHHHH
Q 010836 79 VILHVGPTNSGKTHQAL 95 (499)
Q Consensus 79 ~vli~apTGsGKT~~~l 95 (499)
.+++.||.|||||+++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999973
No 265
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=81.99 E-value=1.3 Score=42.97 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=26.7
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEcc
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGP 109 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P 109 (499)
.++.+++.|++|+|||+.+++.+. .+++++|+..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~ 99 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDA 99 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 478999999999999999865543 3567888843
No 266
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=81.96 E-value=1.5 Score=43.80 Aligned_cols=52 Identities=19% Similarity=0.180 Sum_probs=33.7
Q ss_pred CceEEEEccCCccHHHHHH---HHHHc-CCCEEEEc--cHHHHHHHHHHHHHh-cCCce
Q 010836 77 RKVILHVGPTNSGKTHQAL---SRLES-SSSGIYCG--PLRLLAWEVAKRLNK-ANVSC 128 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l---~~l~~-~~~~l~l~--P~r~La~q~~~~l~~-~g~~~ 128 (499)
...++++|++|+|||+.+. .++.+ +.+++++. |.|.-+.++.+.+.+ .|+++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv 158 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEV 158 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEE
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcE
Confidence 5789999999999999962 23333 45666653 566666555555543 45544
No 267
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=81.95 E-value=2.3 Score=43.21 Aligned_cols=56 Identities=9% Similarity=-0.040 Sum_probs=44.2
Q ss_pred CCceEEEEccCCccHHHHHHHHHHc-CCCEEEEccHHHHHHHHHHHHHhc-CCceeEe
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKA-NVSCDLI 131 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~-~~~~l~l~P~r~La~q~~~~l~~~-g~~~~~~ 131 (499)
.+....+.|-||||||+.+...+.+ ++..|+++|....|.++++.++.+ +-.|.++
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~~l~~~~~~~v~~f 70 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQMVMNL 70 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHHHHHHSSSCEEEEESSHHHHHHHHHHHHHTCSSCEEEC
T ss_pred CCCeEEEeCCCchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 3667899999999999987666654 457899999999999999999975 3334433
No 268
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=81.86 E-value=0.68 Score=40.14 Aligned_cols=19 Identities=32% Similarity=0.462 Sum_probs=16.3
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
.+.+++.|+.|||||+++-
T Consensus 6 ~~~I~l~G~~GsGKsT~~~ 24 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCA 24 (194)
T ss_dssp CEEEEEEESTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3578999999999999863
No 269
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=81.86 E-value=0.65 Score=39.57 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=15.2
Q ss_pred ceEEEEccCCccHHHHH
Q 010836 78 KVILHVGPTNSGKTHQA 94 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~ 94 (499)
+.+++.|+.|||||+++
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 46899999999999986
No 270
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=81.77 E-value=0.68 Score=41.51 Aligned_cols=19 Identities=26% Similarity=0.277 Sum_probs=16.4
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
...+++.|+.|||||+++-
T Consensus 5 ~~~I~l~G~~GsGKsT~~~ 23 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCE 23 (222)
T ss_dssp SCCEEEEESTTSSHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 4678999999999999863
No 271
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=81.66 E-value=0.51 Score=40.71 Aligned_cols=21 Identities=38% Similarity=0.491 Sum_probs=13.2
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~ 96 (499)
++..+++.|+.|||||+++-.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp -CCEEEEECCC----CHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 357899999999999998743
No 272
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=81.40 E-value=0.69 Score=39.67 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=14.8
Q ss_pred eEEEEccCCccHHHHH
Q 010836 79 VILHVGPTNSGKTHQA 94 (499)
Q Consensus 79 ~vli~apTGsGKT~~~ 94 (499)
.+++.|+.|||||+++
T Consensus 6 ~i~i~G~~GsGKsTla 21 (175)
T 1via_A 6 NIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 6899999999999986
No 273
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=81.33 E-value=3 Score=41.13 Aligned_cols=77 Identities=13% Similarity=0.213 Sum_probs=59.4
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcC--CCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhh-c---cccc-ccc
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRG--KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIG-M---GLNL-NIS 310 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~--~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~-~---Gidi-pv~ 310 (499)
.+.++|+. ++.-+.++++.+++.+ ..++..+||+.+..+|....+.+.. +..+|+|+|.-.- . -++. .++
T Consensus 64 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~--~~~~Iiv~Tp~~l~~~l~~~~~~~~~ 141 (414)
T 3oiy_A 64 GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE--DDYHILVFSTQFVSKNREKLSQKRFD 141 (414)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHH--TCCSEEEEEHHHHHHCHHHHTTCCCS
T ss_pred CCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhc--CCCCEEEECHHHHHHHHHHhcccccc
Confidence 45566666 8999999999998852 3489999999999888888888888 8889999997322 1 1445 488
Q ss_pred EEEEccc
Q 010836 311 RIIFSTM 317 (499)
Q Consensus 311 ~VI~~~~ 317 (499)
+||....
T Consensus 142 ~iViDEa 148 (414)
T 3oiy_A 142 FVFVDDV 148 (414)
T ss_dssp EEEESCH
T ss_pred EEEEeCh
Confidence 8887665
No 274
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=81.31 E-value=1.8 Score=39.53 Aligned_cols=18 Identities=56% Similarity=0.748 Sum_probs=15.5
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
.+.+++.||+|+|||+.+
T Consensus 49 ~~g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLA 66 (254)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 345999999999999986
No 275
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=81.28 E-value=1.6 Score=38.44 Aligned_cols=19 Identities=42% Similarity=0.302 Sum_probs=16.6
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+.+.|++|||||+.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp SSEEEEEEECTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3578899999999999985
No 276
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=81.28 E-value=0.72 Score=39.87 Aligned_cols=17 Identities=29% Similarity=0.331 Sum_probs=15.2
Q ss_pred ceEEEEccCCccHHHHH
Q 010836 78 KVILHVGPTNSGKTHQA 94 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~ 94 (499)
..+++.|+.|||||+++
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45899999999999986
No 277
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=81.25 E-value=0.71 Score=43.85 Aligned_cols=19 Identities=26% Similarity=0.338 Sum_probs=17.1
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+++.||||+|||+.+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4678999999999999986
No 278
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.17 E-value=1.2 Score=44.54 Aligned_cols=20 Identities=30% Similarity=0.408 Sum_probs=17.1
Q ss_pred CCceEEEEccCCccHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l 95 (499)
..+-++++||+|+|||+.+-
T Consensus 205 ~prGiLL~GPPGtGKT~lak 224 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVK 224 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 36789999999999998763
No 279
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=81.16 E-value=0.82 Score=40.48 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=16.7
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
++..+++.|+.|||||+++
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678999999999999875
No 280
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=81.11 E-value=1.2 Score=43.17 Aligned_cols=23 Identities=26% Similarity=0.232 Sum_probs=19.7
Q ss_pred CCceEEEEccCCccHHHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALSRL 98 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l 98 (499)
.+..+.+.||+|||||+.+.+.+
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~ 152 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLA 152 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 48899999999999999975544
No 281
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=81.00 E-value=0.81 Score=40.93 Aligned_cols=18 Identities=28% Similarity=0.540 Sum_probs=16.1
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
+..+++.|+.|||||+++
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 467899999999999996
No 282
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=80.97 E-value=1.1 Score=38.64 Aligned_cols=23 Identities=22% Similarity=0.273 Sum_probs=18.1
Q ss_pred CceEEEEccCCccHHHHH--HHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA--LSRLE 99 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~--l~~l~ 99 (499)
....+++||+|||||+.. +..++
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 448899999999999884 55544
No 283
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=80.93 E-value=2.4 Score=40.62 Aligned_cols=32 Identities=31% Similarity=0.321 Sum_probs=22.8
Q ss_pred CCceEEEEccCCccHHHHH--HHHH--HcCCCEEEE
Q 010836 76 VRKVILHVGPTNSGKTHQA--LSRL--ESSSSGIYC 107 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~--l~~l--~~~~~~l~l 107 (499)
.+..+.++||+|+|||+.. +..+ ..++++.+.
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~ 163 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIA 163 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 4788999999999999985 2222 235566555
No 284
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=80.87 E-value=0.74 Score=45.10 Aligned_cols=19 Identities=53% Similarity=0.700 Sum_probs=16.8
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
....+++.||+|+|||+.+
T Consensus 71 ~~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCCEEEECCCCCCHHHHH
Confidence 3568999999999999886
No 285
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=80.74 E-value=3.3 Score=50.84 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=21.6
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcC
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLESS 101 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~~ 101 (499)
.++.++++||||+|||..+-..+...
T Consensus 1266 ~~~~vLL~GPpGtGKT~la~~~l~~~ 1291 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIMNNALRNS 1291 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHhcC
Confidence 47999999999999999886666543
No 286
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=80.58 E-value=0.84 Score=40.00 Aligned_cols=20 Identities=30% Similarity=0.233 Sum_probs=16.9
Q ss_pred CCceEEEEccCCccHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l 95 (499)
+...+.+.|++|||||+++-
T Consensus 7 ~~~~I~i~G~~GsGKST~~~ 26 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAA 26 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHH
Confidence 35678999999999999873
No 287
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=80.54 E-value=0.64 Score=44.32 Aligned_cols=76 Identities=16% Similarity=0.204 Sum_probs=47.5
Q ss_pred eEEEEccCCccHHHHHHHHHH----c--CCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecccCCCceEEEce---
Q 010836 79 VILHVGPTNSGKTHQALSRLE----S--SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEVDGAKHRAVTV--- 149 (499)
Q Consensus 79 ~vli~apTGsGKT~~~l~~l~----~--~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~~~~~~iv~T~--- 149 (499)
.+.+.||+|+|||+.+++.+. . +++++|+...-.+... +++.+|+... ++++..+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~---ra~~lGvd~d-------------~llv~~~~~~ 93 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA---YLRSMGVDPE-------------RVIHTPVQSL 93 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH---HHHHTTCCGG-------------GEEEEECSBH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH---HHHHhCCCHH-------------HeEEEcCCCH
Confidence 789999999999999876653 2 5678888544333222 3555665421 1222222
Q ss_pred -ee-cc--------ccCCccEEEEecCcccC
Q 010836 150 -EM-AD--------VVSDYDCAVIDEIQMLG 170 (499)
Q Consensus 150 -e~-~~--------~l~~~~~iViDEah~~~ 170 (499)
+. +. .-..++++|||=+..+.
T Consensus 94 E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 94 EQLRIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HHHHHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred HHHHHHHHHHHHHhhccCceEEEEecccccc
Confidence 11 11 11468999999999885
No 288
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=80.46 E-value=2.4 Score=36.36 Aligned_cols=17 Identities=41% Similarity=0.372 Sum_probs=14.7
Q ss_pred ceEEEEccCCccHHHHH
Q 010836 78 KVILHVGPTNSGKTHQA 94 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~ 94 (499)
+.+.+.|+.|||||+..
T Consensus 5 ~~i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLM 21 (169)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46889999999999875
No 289
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=80.26 E-value=1.6 Score=38.22 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=16.9
Q ss_pred CceEEEEccCCccHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~ 96 (499)
...+++.|+.|||||+++-.
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~ 34 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEK 34 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 46789999999999998743
No 290
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=80.26 E-value=0.85 Score=39.95 Aligned_cols=16 Identities=25% Similarity=0.364 Sum_probs=14.3
Q ss_pred eEEEEccCCccHHHHH
Q 010836 79 VILHVGPTNSGKTHQA 94 (499)
Q Consensus 79 ~vli~apTGsGKT~~~ 94 (499)
.+++.|+.|||||+++
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 5789999999999875
No 291
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=80.19 E-value=0.81 Score=43.24 Aligned_cols=17 Identities=47% Similarity=0.671 Sum_probs=15.7
Q ss_pred ceEEEEccCCccHHHHH
Q 010836 78 KVILHVGPTNSGKTHQA 94 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~ 94 (499)
..+++.||+|+|||+.+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 57999999999999986
No 292
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=80.11 E-value=1.3 Score=39.30 Aligned_cols=19 Identities=21% Similarity=0.251 Sum_probs=15.8
Q ss_pred eEEEEccCCccHHHHHHHH
Q 010836 79 VILHVGPTNSGKTHQALSR 97 (499)
Q Consensus 79 ~vli~apTGsGKT~~~l~~ 97 (499)
.+++.||.|||||+++-..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L 20 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERI 20 (216)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 4789999999999997443
No 293
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=80.06 E-value=1.8 Score=41.09 Aligned_cols=32 Identities=25% Similarity=0.334 Sum_probs=23.4
Q ss_pred CCceEEEEccCCccHHHHH--HHHH--HcCCCEEEE
Q 010836 76 VRKVILHVGPTNSGKTHQA--LSRL--ESSSSGIYC 107 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~--l~~l--~~~~~~l~l 107 (499)
.+..+.+.||+|||||+.. +..+ ..++++.+.
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~ 134 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMA 134 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 4788999999999999985 3222 235666665
No 294
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=79.98 E-value=1.7 Score=38.87 Aligned_cols=20 Identities=20% Similarity=0.340 Sum_probs=17.4
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
+.+..+++.|+.|||||+++
T Consensus 4 m~g~~i~~eG~~gsGKsT~~ 23 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNR 23 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHH
Confidence 56889999999999999886
No 295
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=79.98 E-value=0.89 Score=41.54 Aligned_cols=21 Identities=29% Similarity=0.403 Sum_probs=17.7
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~ 96 (499)
....+++.||.|||||+++-.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 456799999999999999743
No 296
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=79.94 E-value=0.91 Score=40.59 Aligned_cols=17 Identities=35% Similarity=0.421 Sum_probs=15.4
Q ss_pred ceEEEEccCCccHHHHH
Q 010836 78 KVILHVGPTNSGKTHQA 94 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~ 94 (499)
+.+++.||+|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47899999999999886
No 297
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=79.94 E-value=1.7 Score=42.40 Aligned_cols=33 Identities=21% Similarity=0.340 Sum_probs=26.2
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEc
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCG 108 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~ 108 (499)
.+..+++.||+|+|||..+++.+. .+++++|+.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~ 109 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFID 109 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEE
Confidence 478999999999999999866543 356788884
No 298
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=79.85 E-value=0.84 Score=42.03 Aligned_cols=20 Identities=30% Similarity=0.295 Sum_probs=17.8
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
+.++.+++.|+.|||||+++
T Consensus 46 l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 46 LNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HTTCCEEEECSTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 34889999999999999986
No 299
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=79.82 E-value=1.1 Score=40.06 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=18.9
Q ss_pred CCceEEEEccCCccHHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALSR 97 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~ 97 (499)
.+..+.+.||+|||||+.+...
T Consensus 24 ~G~~~~l~G~nGsGKSTll~~l 45 (231)
T 4a74_A 24 TQAITEVFGEFGSGKTQLAHTL 45 (231)
T ss_dssp SSEEEEEEESTTSSHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHH
Confidence 5889999999999999997443
No 300
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=79.75 E-value=0.9 Score=38.47 Aligned_cols=16 Identities=31% Similarity=0.331 Sum_probs=14.6
Q ss_pred eEEEEccCCccHHHHH
Q 010836 79 VILHVGPTNSGKTHQA 94 (499)
Q Consensus 79 ~vli~apTGsGKT~~~ 94 (499)
.+++.|+.|||||+++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5789999999999996
No 301
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=79.62 E-value=0.99 Score=41.21 Aligned_cols=19 Identities=26% Similarity=0.298 Sum_probs=16.7
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
....+++.||.|||||+.+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3578999999999999986
No 302
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=79.57 E-value=1.2 Score=39.48 Aligned_cols=20 Identities=35% Similarity=0.493 Sum_probs=17.1
Q ss_pred eEEEEccCCccHHHHHHHHH
Q 010836 79 VILHVGPTNSGKTHQALSRL 98 (499)
Q Consensus 79 ~vli~apTGsGKT~~~l~~l 98 (499)
..++.|+.|||||+.+...+
T Consensus 7 i~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 67899999999999986654
No 303
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=79.51 E-value=0.95 Score=40.22 Aligned_cols=20 Identities=30% Similarity=0.290 Sum_probs=17.6
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+++.|+.|||||+++
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45788999999999999986
No 304
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=79.42 E-value=0.89 Score=40.48 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=14.9
Q ss_pred eEEEEccCCccHHHHHH
Q 010836 79 VILHVGPTNSGKTHQAL 95 (499)
Q Consensus 79 ~vli~apTGsGKT~~~l 95 (499)
.+++.|+.|||||+++-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQ 18 (214)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999999973
No 305
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=79.31 E-value=1.2 Score=41.47 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=19.5
Q ss_pred cCCceEEEEccCCccHHHHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQALSR 97 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l~~ 97 (499)
..+..+++.||+|||||+.+.+.
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l 50 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQL 50 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHH
Confidence 45899999999999999997543
No 306
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=79.30 E-value=1.9 Score=40.94 Aligned_cols=32 Identities=31% Similarity=0.506 Sum_probs=22.8
Q ss_pred CCceEEEEccCCccHHHHH--HHHHH--cCCCEEEE
Q 010836 76 VRKVILHVGPTNSGKTHQA--LSRLE--SSSSGIYC 107 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~--l~~l~--~~~~~l~l 107 (499)
.+..+.+.||+|||||+.. +..+. .++++.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~ 136 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFC 136 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 4678999999999999985 33332 34566555
No 307
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=79.27 E-value=1 Score=41.41 Aligned_cols=19 Identities=32% Similarity=0.485 Sum_probs=16.9
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+.+.||+|||||+.+
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678999999999999986
No 308
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=79.25 E-value=0.9 Score=45.87 Aligned_cols=18 Identities=39% Similarity=0.660 Sum_probs=16.3
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
++.+++.||+|+|||+.+
T Consensus 63 ~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp TCEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCcCCHHHHH
Confidence 578999999999999886
No 309
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=79.01 E-value=1.1 Score=40.88 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHcCCCeEEEE---cCCCCHHHHHHHHHHhcC--CCCCccEEEecchhhccccccccEEEEc
Q 010836 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND--ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (499)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~~---hg~l~~~~R~~~~~~f~~--~~g~~~iLvaT~~~~~Gidipv~~VI~~ 315 (499)
.+.--.++..|-..+ ++.++ .+++++..+..+.+.+++ .....-||++|--++. ..+ ++.|+..
T Consensus 150 q~QRv~iAral~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~-~~~-~d~i~~l 218 (235)
T 3tif_A 150 QQQRVAIARALANNP--PIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV-ARF-GERIIYL 218 (235)
T ss_dssp HHHHHHHHHHHTTCC--SEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH-HTT-SSEEEEE
T ss_pred HHHHHHHHHHHHcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHH-HHh-CCEEEEE
Confidence 344455666665443 46666 478888888777766654 1113346666644332 222 5666544
No 310
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=78.87 E-value=1 Score=39.08 Aligned_cols=16 Identities=50% Similarity=0.549 Sum_probs=14.2
Q ss_pred eEEEEccCCccHHHHH
Q 010836 79 VILHVGPTNSGKTHQA 94 (499)
Q Consensus 79 ~vli~apTGsGKT~~~ 94 (499)
.+++.|+.|||||+++
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999875
No 311
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=78.81 E-value=0.99 Score=39.71 Aligned_cols=16 Identities=31% Similarity=0.277 Sum_probs=14.5
Q ss_pred eEEEEccCCccHHHHH
Q 010836 79 VILHVGPTNSGKTHQA 94 (499)
Q Consensus 79 ~vli~apTGsGKT~~~ 94 (499)
.+.+.|+.|||||+.+
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 5889999999999885
No 312
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=78.72 E-value=1.9 Score=38.48 Aligned_cols=19 Identities=32% Similarity=0.326 Sum_probs=17.2
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
++..+++.|+.|||||+++
T Consensus 2 ~g~~i~~eG~~gsGKsT~~ 20 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTAR 20 (213)
T ss_dssp CCCEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5788999999999999996
No 313
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.64 E-value=1.6 Score=43.36 Aligned_cols=19 Identities=32% Similarity=0.351 Sum_probs=16.8
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
.+-++++||+|+|||+.|-
T Consensus 216 prGvLLyGPPGTGKTlLAk 234 (437)
T 4b4t_I 216 PKGVILYGAPGTGKTLLAK 234 (437)
T ss_dssp CSEEEEESSTTTTHHHHHH
T ss_pred CCCCceECCCCchHHHHHH
Confidence 6889999999999998763
No 314
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=78.63 E-value=3.5 Score=39.20 Aligned_cols=33 Identities=21% Similarity=0.190 Sum_probs=25.3
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEc
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCG 108 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~ 108 (499)
.+..+++.|++|+|||..+++... ++.+++|+.
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~s 103 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHS 103 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 588999999999999998765443 345677773
No 315
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=78.61 E-value=0.46 Score=43.99 Aligned_cols=18 Identities=50% Similarity=0.649 Sum_probs=15.8
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
.+.+++.||+|+|||+.+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456899999999999886
No 316
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=78.51 E-value=2.5 Score=39.28 Aligned_cols=17 Identities=59% Similarity=0.810 Sum_probs=15.1
Q ss_pred ceEEEEccCCccHHHHH
Q 010836 78 KVILHVGPTNSGKTHQA 94 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~ 94 (499)
+.+++.||+|+|||+.+
T Consensus 74 ~gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLA 90 (278)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcChHHHHH
Confidence 44999999999999986
No 317
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=78.48 E-value=1.1 Score=38.87 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=14.3
Q ss_pred eEEEEccCCccHHHHH
Q 010836 79 VILHVGPTNSGKTHQA 94 (499)
Q Consensus 79 ~vli~apTGsGKT~~~ 94 (499)
.+.+.||.|||||+..
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999985
No 318
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=78.29 E-value=1.1 Score=41.45 Aligned_cols=18 Identities=22% Similarity=0.302 Sum_probs=15.7
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
...++++|+.|||||+.+
T Consensus 4 ~~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFS 21 (260)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CEEEEEEcCCCCCHHHHH
Confidence 457899999999999875
No 319
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=78.26 E-value=1.5 Score=38.82 Aligned_cols=26 Identities=23% Similarity=0.137 Sum_probs=20.5
Q ss_pred CCceEEEEccCCccHHHH--HHHHHHcC
Q 010836 76 VRKVILHVGPTNSGKTHQ--ALSRLESS 101 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~--~l~~l~~~ 101 (499)
.....+++||+|||||.. |+.+++.+
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 456889999999999999 46665544
No 320
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=77.98 E-value=9.2 Score=36.35 Aligned_cols=103 Identities=11% Similarity=-0.095 Sum_probs=56.9
Q ss_pred CEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecchhhcccc-----c-cccEEE
Q 010836 241 DCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDAIGMGLN-----L-NISRII 313 (499)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~~~~Gid-----i-pv~~VI 313 (499)
++++|. ..+..+-+.+.+...+. +..-+.|..... +.+. .+ ....+-+.|...+-|+| + +.+.||
T Consensus 127 kVLIfsq~t~~LDilE~~l~~~~~-~y~RlDG~~~~~-~~k~----~~--~~~~i~Lltsag~~gin~~~~nl~~aD~VI 198 (328)
T 3hgt_A 127 ETAIVCRPGRTMDLLEALLLGNKV-HIKRYDGHSIKS-AAAA----ND--FSCTVHLFSSEGINFTKYPIKSKARFDMLI 198 (328)
T ss_dssp EEEEEECSTHHHHHHHHHHTTSSC-EEEESSSCCC------------C--CSEEEEEEESSCCCTTTSCCCCCSCCSEEE
T ss_pred EEEEEECChhHHHHHHHHHhcCCC-ceEeCCCCchhh-hhhc----cc--CCceEEEEECCCCCCcCcccccCCCCCEEE
Confidence 445555 56666666666665554 888888885443 2111 13 45556566777677776 5 599999
Q ss_pred EcccccccCccccccChhhHHhhhccCCCCCCC-CCcEEEEEEcCCC
Q 010836 314 FSTMKKFDGVELRDLTVPEVKQIAGRAGRYGSK-FPVGEVTCLDSED 359 (499)
Q Consensus 314 ~~~~~~~~~~~~~p~s~~~~~Qr~GRagR~g~~-~~~g~~~~~~~~~ 359 (499)
.+|.. |-.....+|.+-|+.|.|.+ ...-.||.+....
T Consensus 199 ~~Dsd--------wNp~~d~iQa~~r~~R~~~gq~k~v~V~RLvt~~ 237 (328)
T 3hgt_A 199 CLDTT--------VDTSQKDIQYLLQYKRERKGLERYAPIVRLVAIN 237 (328)
T ss_dssp ECSTT--------CCTTSHHHHHHHCCC---------CCEEEEEETT
T ss_pred EECCC--------CCCCChHHHHHHHHhhhccCCCCcceEEEEeCCC
Confidence 99873 22333468877788776421 1224566665543
No 321
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.86 E-value=1.4 Score=44.12 Aligned_cols=20 Identities=45% Similarity=0.444 Sum_probs=17.4
Q ss_pred CCceEEEEccCCccHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l 95 (499)
..+.++++||+|+|||+.+-
T Consensus 242 pprGILLyGPPGTGKTlLAk 261 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCAR 261 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHH
T ss_pred CCCceEeeCCCCCcHHHHHH
Confidence 46899999999999998763
No 322
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=77.82 E-value=1.2 Score=39.79 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=15.8
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
+..+.+.|+.|||||+++
T Consensus 4 ~~~I~i~G~~GSGKST~~ 21 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVA 21 (218)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 457899999999999986
No 323
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=77.82 E-value=0.82 Score=42.06 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=16.5
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+++.|++|||||+.+
T Consensus 31 ~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp SCEEEEEESCGGGTTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3578999999999999875
No 324
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=77.79 E-value=0.85 Score=43.69 Aligned_cols=19 Identities=26% Similarity=0.141 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+.++++.||+|+|||..+
T Consensus 45 ~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 45 TGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HTCCEEEESCCCHHHHHHH
T ss_pred cCCeEEEECCCCCcHHHHH
Confidence 3779999999999999886
No 325
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=77.78 E-value=1 Score=39.19 Aligned_cols=16 Identities=38% Similarity=0.424 Sum_probs=14.3
Q ss_pred eEEEEccCCccHHHHH
Q 010836 79 VILHVGPTNSGKTHQA 94 (499)
Q Consensus 79 ~vli~apTGsGKT~~~ 94 (499)
.+++.|+.|||||+++
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999986
No 326
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=77.73 E-value=1.3 Score=42.43 Aligned_cols=33 Identities=18% Similarity=-0.018 Sum_probs=22.3
Q ss_pred ceEEEEccCCccHHHHHH--HHHHcCCCEEEEccH
Q 010836 78 KVILHVGPTNSGKTHQAL--SRLESSSSGIYCGPL 110 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l--~~l~~~~~~l~l~P~ 110 (499)
..+++.|+.|||||+..- .....+.++.++.|.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d 39 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENE 39 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSS
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEec
Confidence 468899999999998852 222334455666553
No 327
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=77.69 E-value=1.1 Score=39.48 Aligned_cols=16 Identities=38% Similarity=0.405 Sum_probs=14.3
Q ss_pred eEEEEccCCccHHHHH
Q 010836 79 VILHVGPTNSGKTHQA 94 (499)
Q Consensus 79 ~vli~apTGsGKT~~~ 94 (499)
.+.+.||.|||||+++
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999875
No 328
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=77.61 E-value=1.5 Score=42.91 Aligned_cols=25 Identities=20% Similarity=0.201 Sum_probs=19.6
Q ss_pred cCCceEEEEccCCccHHHH--HHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQ--ALSRLE 99 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~--~l~~l~ 99 (499)
......+++||||+|||.. |+.++.
T Consensus 23 f~~gl~vi~G~NGaGKT~ileAI~~~l 49 (371)
T 3auy_A 23 FEKGIVAIIGENGSGKSSIFEAVFFAL 49 (371)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3467889999999999999 465533
No 329
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=77.60 E-value=1.2 Score=41.63 Aligned_cols=18 Identities=39% Similarity=0.495 Sum_probs=15.4
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
.+.+++.||+|+|||+.+
T Consensus 44 ~~GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLA 61 (274)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 344999999999999885
No 330
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=77.54 E-value=1 Score=43.41 Aligned_cols=17 Identities=41% Similarity=0.573 Sum_probs=15.5
Q ss_pred ceEEEEccCCccHHHHH
Q 010836 78 KVILHVGPTNSGKTHQA 94 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~ 94 (499)
..+++.||+|+|||+.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 67999999999999885
No 331
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=77.44 E-value=1.1 Score=40.21 Aligned_cols=16 Identities=50% Similarity=0.679 Sum_probs=14.5
Q ss_pred eEEEEccCCccHHHHH
Q 010836 79 VILHVGPTNSGKTHQA 94 (499)
Q Consensus 79 ~vli~apTGsGKT~~~ 94 (499)
.+++.|+.|||||+++
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQG 17 (223)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999986
No 332
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=77.33 E-value=2.2 Score=40.70 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=17.6
Q ss_pred eEEEEccCCccHHHHH--HHHHHc
Q 010836 79 VILHVGPTNSGKTHQA--LSRLES 100 (499)
Q Consensus 79 ~vli~apTGsGKT~~~--l~~l~~ 100 (499)
.+.+.||+|||||+.+ +..++.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 7889999999999996 444543
No 333
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=77.31 E-value=2.9 Score=42.57 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=21.5
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcCCCEEE
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLESSSSGIY 106 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~~~~~l~ 106 (499)
..+.+++.||+|+|||+.+-......+..++
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv 267 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFF 267 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSSEEE
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCCCEE
Confidence 4578999999999999987433333333333
No 334
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=77.08 E-value=2.9 Score=47.65 Aligned_cols=48 Identities=17% Similarity=0.059 Sum_probs=37.4
Q ss_pred cCCceEEEEccCCccHHHHH----HHHHHcC------------CCEEEEccHHHHHHHHHHHHHh
Q 010836 75 KVRKVILHVGPTNSGKTHQA----LSRLESS------------SSGIYCGPLRLLAWEVAKRLNK 123 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~----l~~l~~~------------~~~l~l~P~r~La~q~~~~l~~ 123 (499)
+.+. .+|.|.-|||||.+. +..|... .++|++.=|+..|.++.+|+.+
T Consensus 15 l~g~-~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~ 78 (1180)
T 1w36_B 15 LQGE-RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRS 78 (1180)
T ss_dssp CSSC-EEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHH
T ss_pred CCCC-EEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHH
Confidence 3454 499999999999984 4555432 2579999999999999999874
No 335
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=77.03 E-value=2.4 Score=40.18 Aligned_cols=25 Identities=32% Similarity=0.389 Sum_probs=19.4
Q ss_pred CCceEEEEccCCccHHHHH--HHHHHc
Q 010836 76 VRKVILHVGPTNSGKTHQA--LSRLES 100 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~--l~~l~~ 100 (499)
.+..+.+.||+|||||+.+ +..+..
T Consensus 79 ~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4678889999999999985 444443
No 336
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=77.00 E-value=4.5 Score=38.90 Aligned_cols=42 Identities=12% Similarity=0.046 Sum_probs=29.2
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEE---ccHHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYC---GPLRLLAWEV 117 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l---~P~r~La~q~ 117 (499)
.+..+++.|++|+|||..+++... .+..++|+ .|...++.-+
T Consensus 45 ~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEms~~ql~~Rl 93 (338)
T 4a1f_A 45 KGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEMSAEQLALRA 93 (338)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCHHHHHHHH
Confidence 478899999999999999765432 45567777 4444444433
No 337
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=76.95 E-value=1.3 Score=40.29 Aligned_cols=64 Identities=9% Similarity=0.084 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHcCCCeEEEE---cCCCCHHHHHHHHHHhc---CCCCCccEEEecchhhccccccccEEEEc
Q 010836 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFN---DASSEFDVLVASDAIGMGLNLNISRIIFS 315 (499)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~~---hg~l~~~~R~~~~~~f~---~~~g~~~iLvaT~~~~~Gidipv~~VI~~ 315 (499)
.+.--.++..|-... ++.++ .+++++..+..+.+.+. .-....-||++|--.+. +.. ++.|+..
T Consensus 132 qkqRv~lAraL~~~p--~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~-~~~-~d~v~~l 201 (237)
T 2cbz_A 132 QKQRVSLARAVYSNA--DIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSY-LPQ-VDVIIVM 201 (237)
T ss_dssp HHHHHHHHHHHHHCC--SEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTT-GGG-SSEEEEE
T ss_pred HHHHHHHHHHHhcCC--CEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHH-HHh-CCEEEEE
Confidence 445556677776654 46666 48899998888888773 20123456666654332 232 6666654
No 338
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=76.75 E-value=2.4 Score=41.17 Aligned_cols=32 Identities=25% Similarity=0.295 Sum_probs=23.3
Q ss_pred CCceEEEEccCCccHHHHH--HHHHH--cCCCEEEE
Q 010836 76 VRKVILHVGPTNSGKTHQA--LSRLE--SSSSGIYC 107 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~--l~~l~--~~~~~l~l 107 (499)
.+..+.++||+|||||+.+ +..+. .++++.+.
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~ 191 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMA 191 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEe
Confidence 4788999999999999985 32222 35666665
No 339
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=76.60 E-value=2.2 Score=40.21 Aligned_cols=16 Identities=44% Similarity=0.704 Sum_probs=14.6
Q ss_pred eEEEEccCCccHHHHH
Q 010836 79 VILHVGPTNSGKTHQA 94 (499)
Q Consensus 79 ~vli~apTGsGKT~~~ 94 (499)
.+++.||+|+|||..+
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 4999999999999886
No 340
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=76.48 E-value=1.3 Score=41.81 Aligned_cols=19 Identities=32% Similarity=0.546 Sum_probs=16.5
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+.|.||+|||||+.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp SCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567889999999999996
No 341
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=76.48 E-value=1.2 Score=45.48 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=17.8
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+.++++.||+|+|||..+
T Consensus 39 ~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 39 LSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHTCEEEEECCSSSSHHHHH
T ss_pred hcCCeeEeecCchHHHHHHH
Confidence 34789999999999999886
No 342
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=76.46 E-value=1.4 Score=41.23 Aligned_cols=20 Identities=25% Similarity=0.245 Sum_probs=17.6
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+.+.||.|||||+..
T Consensus 32 ~~Ge~~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 32 KRGEVTAILGGNGVGKSTLF 51 (275)
T ss_dssp ETTSEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35899999999999999874
No 343
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=76.28 E-value=0.85 Score=39.27 Aligned_cols=17 Identities=35% Similarity=0.493 Sum_probs=14.9
Q ss_pred ceEEEEccCCccHHHHH
Q 010836 78 KVILHVGPTNSGKTHQA 94 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~ 94 (499)
+.+.++|++|||||+.+
T Consensus 3 ~~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLI 19 (171)
T ss_dssp CEEEEEESCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46789999999999986
No 344
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=76.27 E-value=0.77 Score=40.67 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=14.2
Q ss_pred eEEEEccCCccHHHHH
Q 010836 79 VILHVGPTNSGKTHQA 94 (499)
Q Consensus 79 ~vli~apTGsGKT~~~ 94 (499)
.+++.|+.|||||+++
T Consensus 2 ~I~i~G~~GsGKsTl~ 17 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLV 17 (214)
T ss_dssp EEEEEEEEEEEHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5789999999999875
No 345
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=75.94 E-value=1.5 Score=37.19 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=17.0
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+.+.||.|+|||+..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35788999999999999874
No 346
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=75.89 E-value=1.4 Score=42.09 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=19.6
Q ss_pred cCCceEEEEccCCccHHHHH--HHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA--LSRLE 99 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~--l~~l~ 99 (499)
..+..+.|.||+|||||+.+ +..+.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 35778999999999999996 44443
No 347
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=75.83 E-value=2.7 Score=40.10 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=23.3
Q ss_pred CCceEEEEccCCccHHHHH--HH-HH-HcCCCEEEE
Q 010836 76 VRKVILHVGPTNSGKTHQA--LS-RL-ESSSSGIYC 107 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~--l~-~l-~~~~~~l~l 107 (499)
.++.+.+.|++|+|||+.+ +. .+ ..+++++++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVlli 139 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIA 139 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4678999999999999985 22 22 245677766
No 348
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=75.71 E-value=1.2 Score=42.33 Aligned_cols=63 Identities=8% Similarity=0.129 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHcCCCeEEEE---cCCCCHHHHHHHHHHhcC-CCCCccEEEecchhhccccccccEEEEc
Q 010836 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (499)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~~---hg~l~~~~R~~~~~~f~~-~~g~~~iLvaT~~~~~Gidipv~~VI~~ 315 (499)
.+.--.+++.|-... ++.++ .+++++..+..+.+.+++ ..+. -+|+.|--++.=. .++.|+..
T Consensus 195 qrQRvaiARAL~~~p--~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~-Tvi~itH~l~~~~--~aD~i~vl 261 (306)
T 3nh6_A 195 EKQRVAIARTILKAP--GIILLDEATSALDTSNERAIQASLAKVCANR-TTIVVAHRLSTVV--NADQILVI 261 (306)
T ss_dssp HHHHHHHHHHHHHCC--SEEEEECCSSCCCHHHHHHHHHHHHHHHTTS-EEEEECCSHHHHH--TCSEEEEE
T ss_pred HHHHHHHHHHHHhCC--CEEEEECCcccCCHHHHHHHHHHHHHHcCCC-EEEEEEcChHHHH--cCCEEEEE
Confidence 455566777776654 46666 478888888777665543 1143 4455554332211 26666654
No 349
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=75.68 E-value=1.4 Score=40.20 Aligned_cols=19 Identities=32% Similarity=0.205 Sum_probs=16.7
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+-+.||.|||||+.+
T Consensus 24 ~g~iigI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVC 42 (245)
T ss_dssp CSEEEEEECSTTSSHHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4678889999999999986
No 350
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=75.56 E-value=1.4 Score=44.74 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=17.2
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
....++++.||+|+|||..+
T Consensus 199 ~~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHH
T ss_pred cCCCCeEEECCCCCCHHHHH
Confidence 35678999999999999875
No 351
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=75.48 E-value=1.8 Score=40.64 Aligned_cols=32 Identities=13% Similarity=0.037 Sum_probs=23.5
Q ss_pred CCceEEEEccCCccHHHHHHHHH---H-cCC-CEEEE
Q 010836 76 VRKVILHVGPTNSGKTHQALSRL---E-SSS-SGIYC 107 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l---~-~~~-~~l~l 107 (499)
.+..+++.||+|+|||+.+.... . ..+ +++|+
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~ 70 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA 70 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEE
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEE
Confidence 58899999999999999964322 2 324 67676
No 352
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=75.35 E-value=1.5 Score=39.46 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=17.3
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+.+.||.|||||+..
T Consensus 28 ~~Ge~~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 28 KKGEFVSIIGASGSGKSTLL 47 (224)
T ss_dssp ETTCEEEEEECTTSCHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35889999999999999774
No 353
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=75.27 E-value=0.79 Score=42.73 Aligned_cols=56 Identities=16% Similarity=0.249 Sum_probs=42.1
Q ss_pred hcCCCccHHHHHHHHHHhcccCCCccccChHHHHHHHHhhccCCCCHHH-HHhhhcCCCCCCC
Q 010836 391 RLHPDSSLYGILEHFLENAKLSENYFFANCEEVLKVATVIDQLPLRLHE-KYLFCISPVDMND 452 (499)
Q Consensus 391 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~~-~~~~~~~p~~~~~ 452 (499)
+.|+...+..+++.+..+.++++. +.+|.+|+.|.++|+++.. ++++..+-..|.+
T Consensus 13 dpP~~~~l~~A~~~L~~LgAld~~------g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~ 69 (270)
T 3i4u_A 13 RGSPMETLITAMEQLYTLGALDDE------GLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSE 69 (270)
T ss_dssp -CCHHHHHHHHHHHHHHHTSBCTT------SCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHH
T ss_pred CCcCHHHHHHHHHHHHHcCCcCCC------CCccHHHHHHHhCCCCHHHHHHHHHhhhcCCHH
Confidence 445567889999999999999876 4588999999999997766 5555554455433
No 354
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=75.19 E-value=1.5 Score=39.55 Aligned_cols=20 Identities=30% Similarity=0.238 Sum_probs=17.3
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
.++..+.+.|+.|||||+.+
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~ 37 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYL 37 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHH
T ss_pred CCceEEEEECCCCCCHHHHH
Confidence 34788999999999999875
No 355
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=75.05 E-value=1.6 Score=40.04 Aligned_cols=63 Identities=13% Similarity=0.157 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHcCCCeEEEE---cCCCCHHHHHHHHHHhcC-CCCCccEEEecchhhccccccccEEEEc
Q 010836 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (499)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~~---hg~l~~~~R~~~~~~f~~-~~g~~~iLvaT~~~~~Gidipv~~VI~~ 315 (499)
.+.--.++..|-... ++.++ .+++++..+..+.+.+++ ..| .-||++|--.+. +.. ++.|+..
T Consensus 150 q~qRv~iAraL~~~p--~lllLDEPts~LD~~~~~~i~~~l~~~~~g-~tviivtH~~~~-~~~-~d~v~~l 216 (247)
T 2ff7_A 150 QRQRIAIARALVNNP--KILIFDEATSALDYESEHVIMRNMHKICKG-RTVIIIAHRLST-VKN-ADRIIVM 216 (247)
T ss_dssp HHHHHHHHHHHTTCC--SEEEECCCCSCCCHHHHHHHHHHHHHHHTT-SEEEEECSSGGG-GTT-SSEEEEE
T ss_pred HHHHHHHHHHHhcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHcCC-CEEEEEeCCHHH-HHh-CCEEEEE
Confidence 444555666665443 46666 488999988877766543 114 345655543332 222 6666654
No 356
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=75.02 E-value=1.3 Score=38.85 Aligned_cols=42 Identities=17% Similarity=0.063 Sum_probs=25.4
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcCCCEEEEccHHHHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAK 119 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~~~~~l~l~P~r~La~q~~~ 119 (499)
.+..+.+.|+.|||||+++-.....-+ +.+...-.++.+.+.
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg--~~vid~D~~~~~~~~ 52 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYG--AHVVNVDRIGHEVLE 52 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHC--CEEEEHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcC--CEEEECcHHHHHHHH
Confidence 345678899999999999632222212 344455555555543
No 357
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=74.99 E-value=1.5 Score=38.45 Aligned_cols=18 Identities=28% Similarity=0.493 Sum_probs=15.4
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
+..+.+.||+|+|||+..
T Consensus 1 G~~i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLI 18 (189)
T ss_dssp CCCEEEESCCSSCHHHHH
T ss_pred CCEEEEECCCCChHHHHH
Confidence 356889999999999985
No 358
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=74.96 E-value=1.5 Score=39.57 Aligned_cols=19 Identities=37% Similarity=0.496 Sum_probs=17.1
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+++.|+.|||||+++
T Consensus 25 ~g~~i~i~G~~GsGKsT~~ 43 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVI 43 (229)
T ss_dssp CCEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 4788999999999999986
No 359
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=74.82 E-value=1.6 Score=39.42 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHcCCCeEEEE---cCCCCHHHHHHHHHHh-cCCCCCccEEEecchhhccccccccEEEEc
Q 010836 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRF-NDASSEFDVLVASDAIGMGLNLNISRIIFS 315 (499)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~~---hg~l~~~~R~~~~~~f-~~~~g~~~iLvaT~~~~~Gidipv~~VI~~ 315 (499)
.+.--.++..|-... ++..+ .+++++..+..+.+.+ ..-....-||++|--.+. +.. ++.|+..
T Consensus 135 qkqrv~lAral~~~p--~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~-~~~-~d~v~~l 202 (229)
T 2pze_A 135 QRARISLARAVYKDA--DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH-LKK-ADKILIL 202 (229)
T ss_dssp HHHHHHHHHHHHSCC--SEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHH-HHH-CSEEEEE
T ss_pred HHHHHHHHHHHhcCC--CEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHH-HHh-CCEEEEE
Confidence 344455666665543 46666 4788888888887753 321112346666643332 222 5665543
No 360
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=74.71 E-value=1.5 Score=39.99 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=17.5
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+.+.||.|||||+..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIF 45 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35889999999999999874
No 361
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=74.66 E-value=1.6 Score=40.30 Aligned_cols=63 Identities=11% Similarity=0.129 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHcCCCeEEEE---cCCCCHHHHHHHHHHhcC-CCCCccEEEecchhhccccccccEEEEc
Q 010836 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (499)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~~---hg~l~~~~R~~~~~~f~~-~~g~~~iLvaT~~~~~Gidipv~~VI~~ 315 (499)
.+.--.++..|-... ++.++ .+++++..+..+.+.+++ ..+ .-||++|--.+. +.. ++.|+..
T Consensus 160 qkqRv~lAraL~~~p--~lllLDEPts~LD~~~~~~i~~~l~~l~~~-~tviivtH~~~~-~~~-~d~i~~l 226 (260)
T 2ghi_A 160 ERQRIAIARCLLKDP--KIVIFDEATSSLDSKTEYLFQKAVEDLRKN-RTLIIIAHRLST-ISS-AESIILL 226 (260)
T ss_dssp HHHHHHHHHHHHHCC--SEEEEECCCCTTCHHHHHHHHHHHHHHTTT-SEEEEECSSGGG-STT-CSEEEEE
T ss_pred HHHHHHHHHHHHcCC--CEEEEECccccCCHHHHHHHHHHHHHhcCC-CEEEEEcCCHHH-HHh-CCEEEEE
Confidence 455556777776654 46666 588999988877665543 114 456666654332 222 6766654
No 362
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=74.59 E-value=1.6 Score=40.45 Aligned_cols=20 Identities=20% Similarity=0.461 Sum_probs=17.6
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+.+.||.|||||+..
T Consensus 35 ~~Ge~~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 35 ASGEMVAIIGPNGAGKSTLL 54 (266)
T ss_dssp ETTCEEEEECCTTSCHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 35899999999999999874
No 363
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=74.55 E-value=1.6 Score=39.14 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=17.5
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+.+.||.|||||+..
T Consensus 33 ~~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 33 EKGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp ETTCCEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35889999999999999874
No 364
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=74.48 E-value=0.8 Score=44.09 Aligned_cols=19 Identities=21% Similarity=0.260 Sum_probs=16.2
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
...+++.||+|+|||+.+-
T Consensus 45 ~~~vLl~G~~GtGKT~la~ 63 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAVR 63 (350)
T ss_dssp GCCEEEECCGGGCTTHHHH
T ss_pred CceEEEECCCCccHHHHHH
Confidence 4569999999999998863
No 365
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=74.12 E-value=1.7 Score=40.06 Aligned_cols=50 Identities=6% Similarity=0.141 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHcCCCeEEEE---cCCCCHHHHHHHHHHhcC-CCCCccEEEecc
Q 010836 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND-ASSEFDVLVASD 299 (499)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~~---hg~l~~~~R~~~~~~f~~-~~g~~~iLvaT~ 299 (499)
.+.--.++..|.... ++.++ .+++++..+..+.+.+++ .....-||++|-
T Consensus 158 qkQrv~iAraL~~~p--~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtH 211 (257)
T 1g6h_A 158 QMKLVEIGRALMTNP--KMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEH 211 (257)
T ss_dssp HHHHHHHHHHHHTCC--SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHHHHHHHHHcCC--CEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 344556677776543 46666 488999988887776654 002345666664
No 366
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=73.88 E-value=1.6 Score=43.75 Aligned_cols=18 Identities=56% Similarity=0.726 Sum_probs=16.4
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
.+++++.||+|+|||+.+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 577999999999999986
No 367
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=73.88 E-value=1.8 Score=39.50 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=17.5
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+.+.||.|||||+..
T Consensus 30 ~~Ge~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 30 PRGQIVTLIGANGAGKTTTL 49 (240)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHH
Confidence 35889999999999999874
No 368
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=73.84 E-value=1.6 Score=41.13 Aligned_cols=19 Identities=42% Similarity=0.562 Sum_probs=16.3
Q ss_pred ceEEEEccCCccHHHHHHH
Q 010836 78 KVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l~ 96 (499)
..+++.|++|||||+++-.
T Consensus 3 ~~I~l~G~~GsGKST~a~~ 21 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWARE 21 (301)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4689999999999999743
No 369
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=73.83 E-value=1.7 Score=40.14 Aligned_cols=51 Identities=12% Similarity=0.125 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHcCCCeEEEE---cCCCCHHHHHHHHHHhcC-CCCCccEEEecch
Q 010836 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND-ASSEFDVLVASDA 300 (499)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~~---hg~l~~~~R~~~~~~f~~-~~g~~~iLvaT~~ 300 (499)
.+.--.++..|-... ++.++ .+++++..+..+.+.+++ .....-||++|--
T Consensus 158 q~qRv~lAraL~~~p--~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 212 (262)
T 1b0u_A 158 QQQRVSIARALAMEP--DVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHE 212 (262)
T ss_dssp HHHHHHHHHHHHTCC--SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSC
T ss_pred HHHHHHHHHHHhcCC--CEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 344455666775543 46666 488999888777766543 0023456666643
No 370
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=73.78 E-value=1.6 Score=42.57 Aligned_cols=18 Identities=22% Similarity=0.418 Sum_probs=15.4
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
....+++||||||||+..
T Consensus 23 ~g~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 23 SGITVVEGPNGAGKSSLF 40 (365)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 347889999999999884
No 371
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=73.70 E-value=3.7 Score=36.02 Aligned_cols=33 Identities=18% Similarity=0.128 Sum_probs=26.3
Q ss_pred CCceEEEEccCCccHHHHH----HHHHHcCCCEEEEc
Q 010836 76 VRKVILHVGPTNSGKTHQA----LSRLESSSSGIYCG 108 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~----l~~l~~~~~~l~l~ 108 (499)
.+..+++..++|.|||++| +.++-.+.++++++
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 4567899999999999997 45566677888884
No 372
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=73.58 E-value=1.8 Score=39.32 Aligned_cols=20 Identities=25% Similarity=0.335 Sum_probs=16.6
Q ss_pred CCceEEEEccCCccHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l 95 (499)
.+..+.+.||+|||||+.+-
T Consensus 8 ~~~~i~i~G~~GsGKsTla~ 27 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSR 27 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 35679999999999999873
No 373
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=73.48 E-value=21 Score=30.62 Aligned_cols=77 Identities=17% Similarity=0.100 Sum_probs=49.0
Q ss_pred CccHHHHHHHHHHc---CCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeeccc----------CCCceEEEceeecc
Q 010836 87 NSGKTHQALSRLES---SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEV----------DGAKHRAVTVEMAD 153 (499)
Q Consensus 87 GsGKT~~~l~~l~~---~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~----------~~~~~iv~T~e~~~ 153 (499)
.+.|-......+.. .+++||.++++.-+..+++.|...|+.+..++|+..... ....++++|.-...
T Consensus 29 ~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~ 108 (185)
T 2jgn_A 29 ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAAR 108 (185)
T ss_dssp GGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHTSSSEEEEEC----
T ss_pred cHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhc
Confidence 45676665444443 467899999999999999999999999999998643321 24567777642211
Q ss_pred --ccCCccEEEE
Q 010836 154 --VVSDYDCAVI 163 (499)
Q Consensus 154 --~l~~~~~iVi 163 (499)
.+..++++|.
T Consensus 109 Gldi~~~~~VI~ 120 (185)
T 2jgn_A 109 GLDISNVKHVIN 120 (185)
T ss_dssp --CCCSBSEEEE
T ss_pred CCCcccCCEEEE
Confidence 2356777765
No 374
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=72.95 E-value=1.5 Score=39.09 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=19.9
Q ss_pred cchHHHhcCCceEEEEccCCccHHHHH
Q 010836 68 WYPLARKKVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 68 ~~~~~~~~~~~~vli~apTGsGKT~~~ 94 (499)
++..+ ..+..+.+.||.|||||+..
T Consensus 15 ~l~~i--~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAI--DTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHH--HHCSEEEEECCTTSSTTHHH
T ss_pred HHHhc--cCCCEEEEECCCCCCHHHHH
Confidence 44444 34889999999999999884
No 375
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=72.87 E-value=1.9 Score=39.14 Aligned_cols=20 Identities=25% Similarity=0.277 Sum_probs=17.3
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
+.+..+++.|+.|||||+++
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~ 44 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAI 44 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 56789999999999999885
No 376
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=72.85 E-value=1.9 Score=39.52 Aligned_cols=51 Identities=12% Similarity=0.105 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHcCCCeEEEE---cCCCCHHHHHHHHHHhcC-CCCCccEEEecch
Q 010836 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND-ASSEFDVLVASDA 300 (499)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~~---hg~l~~~~R~~~~~~f~~-~~g~~~iLvaT~~ 300 (499)
.+.--.++..|-... ++.++ .+++++..+..+.+.+++ .....-||++|--
T Consensus 148 qkQrv~iAraL~~~p--~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd 202 (250)
T 2d2e_A 148 EKKRNEILQLLVLEP--TYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHY 202 (250)
T ss_dssp HHHHHHHHHHHHHCC--SEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSS
T ss_pred HHHHHHHHHHHHcCC--CEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 455566777776654 46666 589999988877766543 1123456666643
No 377
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=72.77 E-value=1.7 Score=44.87 Aligned_cols=19 Identities=32% Similarity=0.455 Sum_probs=17.1
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+++.||+|+|||+.+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4778999999999999886
No 378
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=72.67 E-value=6.4 Score=39.37 Aligned_cols=32 Identities=16% Similarity=-0.036 Sum_probs=24.5
Q ss_pred CCceEEEEccCCccHHHHHHHHH----Hc-CCCEEEE
Q 010836 76 VRKVILHVGPTNSGKTHQALSRL----ES-SSSGIYC 107 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l----~~-~~~~l~l 107 (499)
.+..+++.|++|+|||..+++.. .. +.+++|+
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~ 235 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIY 235 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEE
Confidence 47899999999999999976543 22 4467777
No 379
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=72.63 E-value=1.9 Score=39.95 Aligned_cols=66 Identities=6% Similarity=-0.057 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHcCCCeEEEE---cCCCCHHHHHHHHHHhcCC-CCCccEEEecchhhccccccccEEEEc
Q 010836 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFNDA-SSEFDVLVASDAIGMGLNLNISRIIFS 315 (499)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~~---hg~l~~~~R~~~~~~f~~~-~g~~~iLvaT~~~~~Gidipv~~VI~~ 315 (499)
.+.--.++..|-... ++.++ .+++++..+..+.+.+++- ....-||++|--...--.+-++.|+..
T Consensus 169 q~QRv~iAraL~~~p--~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l 238 (267)
T 2zu0_C 169 EKKRNDILQMAVLEP--ELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVL 238 (267)
T ss_dssp HHHHHHHHHHHHHCC--SEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEE
T ss_pred HHHHHHHHHHHHhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEE
Confidence 455556777776654 46666 5899999998888776651 123457777754332212114555543
No 380
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=72.60 E-value=2 Score=39.66 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=17.1
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+.+.||.|||||+..
T Consensus 40 ~Gei~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTL 58 (256)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 5889999999999999874
No 381
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=72.60 E-value=1.8 Score=43.89 Aligned_cols=18 Identities=56% Similarity=0.665 Sum_probs=15.9
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
.+.+++.||+|+|||+.+
T Consensus 49 p~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLA 66 (476)
T ss_dssp CSEEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 466999999999999886
No 382
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=72.37 E-value=2 Score=37.61 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=14.9
Q ss_pred eEEEEccCCccHHHHH
Q 010836 79 VILHVGPTNSGKTHQA 94 (499)
Q Consensus 79 ~vli~apTGsGKT~~~ 94 (499)
.+.+.|+.|||||+++
T Consensus 4 ~i~i~G~~GsGKst~~ 19 (208)
T 3ake_A 4 IVTIDGPSASGKSSVA 19 (208)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 7889999999999996
No 383
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=72.33 E-value=2 Score=39.98 Aligned_cols=64 Identities=14% Similarity=0.197 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHcCCCeEEEE---cCCCCHHHHHHHHHHhcCC--CCCccEEEecchhhccccccccEEEEc
Q 010836 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFNDA--SSEFDVLVASDAIGMGLNLNISRIIFS 315 (499)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~~---hg~l~~~~R~~~~~~f~~~--~g~~~iLvaT~~~~~Gidipv~~VI~~ 315 (499)
.+.--.++..|-... ++.++ .+++++..+..+.+.+++- ....-||+.|--.+. +.. ++.|+..
T Consensus 161 q~QRv~lAraL~~~p--~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~-~~~-~d~v~~l 229 (271)
T 2ixe_A 161 QRQAVALARALIRKP--RLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL-AER-AHHILFL 229 (271)
T ss_dssp HHHHHHHHHHHTTCC--SEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHH-HTT-CSEEEEE
T ss_pred HHHHHHHHHHHhcCC--CEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHH-HHh-CCEEEEE
Confidence 344455666665443 46666 4889999888877766541 113446666643332 222 6666654
No 384
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=72.32 E-value=2 Score=39.78 Aligned_cols=51 Identities=12% Similarity=0.175 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHcCCCeEEEE---cCCCCHHHHHHHHHHhcC-CCCCccEEEecch
Q 010836 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND-ASSEFDVLVASDA 300 (499)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~~---hg~l~~~~R~~~~~~f~~-~~g~~~iLvaT~~ 300 (499)
.+.--.++..|-... ++.++ .+++++..+..+.+.+++ .....-||++|--
T Consensus 164 qkQRv~lAraL~~~p--~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd 218 (263)
T 2olj_A 164 QAQRVAIARALAMEP--KIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHE 218 (263)
T ss_dssp HHHHHHHHHHHTTCC--SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred HHHHHHHHHHHHCCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCC
Confidence 344445666665443 46666 478898888777766544 0023456666643
No 385
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=72.31 E-value=1.8 Score=38.44 Aligned_cols=19 Identities=32% Similarity=0.319 Sum_probs=16.4
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
+..+.+.|++|||||+++-
T Consensus 3 ~~~i~i~G~~gsGkst~~~ 21 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAK 21 (219)
T ss_dssp CCCEEEECCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4578999999999999973
No 386
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=72.07 E-value=7.2 Score=39.13 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=25.0
Q ss_pred CCceEEEEccCCccHHHHHHHHH----Hc-CCCEEEEc
Q 010836 76 VRKVILHVGPTNSGKTHQALSRL----ES-SSSGIYCG 108 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l----~~-~~~~l~l~ 108 (499)
.+..+++.|++|+|||+.+++.. .. +.+++|+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s 239 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFS 239 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 57899999999999999975433 22 34788873
No 387
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=71.82 E-value=2.1 Score=39.42 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=17.5
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+.+.||.|||||+..
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLL 48 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35889999999999999874
No 388
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=71.79 E-value=2.1 Score=39.70 Aligned_cols=49 Identities=14% Similarity=0.040 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHcCCCeEEEE---cCCCCHHHHHHHHHHhcC-CCCCccEEEecc
Q 010836 249 HAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND-ASSEFDVLVASD 299 (499)
Q Consensus 249 ~~~~~l~~~L~~~~~~~v~~~---hg~l~~~~R~~~~~~f~~-~~g~~~iLvaT~ 299 (499)
+.--.++..|-... ++.++ .+++++..+..+.+.+++ .....-||++|-
T Consensus 144 ~qRv~lAraL~~~p--~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtH 196 (266)
T 2yz2_A 144 KRRVAIASVIVHEP--DILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISH 196 (266)
T ss_dssp HHHHHHHHHHTTCC--SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred HHHHHHHHHHHcCC--CEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 44445666665443 46666 488999988877766544 002335666664
No 389
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=71.78 E-value=2 Score=39.30 Aligned_cols=18 Identities=33% Similarity=0.255 Sum_probs=15.5
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
...+.|.|+.|||||+++
T Consensus 22 ~~iI~I~G~~GSGKST~a 39 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVC 39 (252)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 457889999999999875
No 390
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=71.78 E-value=2.1 Score=39.25 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=17.5
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+.+.||.|||||+..
T Consensus 24 ~~Ge~~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 24 RAGEILHLVGPNGAGKSTLL 43 (249)
T ss_dssp ETTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEECCCCCcHHHHH
Confidence 35889999999999999874
No 391
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=71.72 E-value=3.8 Score=40.44 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=19.9
Q ss_pred CCceEEEEccCCccHHHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALSRL 98 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l 98 (499)
.+..+.+.||+|||||+.+.+.+
T Consensus 177 ~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 177 TGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHH
Confidence 48899999999999999987544
No 392
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=71.46 E-value=4.7 Score=40.37 Aligned_cols=32 Identities=22% Similarity=0.192 Sum_probs=24.3
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEE
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYC 107 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l 107 (499)
.+..+++.|++|+|||..+++... .+.+++|+
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~f 231 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLH 231 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEE
Confidence 578999999999999998765442 34456666
No 393
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=71.44 E-value=2.1 Score=39.96 Aligned_cols=19 Identities=21% Similarity=0.170 Sum_probs=17.1
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+.+.||.|||||+..
T Consensus 46 ~Ge~~~liG~NGsGKSTLl 64 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLL 64 (279)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCcHHHHH
Confidence 5889999999999999874
No 394
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=71.19 E-value=2 Score=40.12 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=16.0
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
...+.+.|+.|||||+++
T Consensus 75 ~~iI~I~G~~GSGKSTva 92 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVA 92 (281)
T ss_dssp CEEEEEEECTTSCHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 457899999999999986
No 395
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=71.14 E-value=4.1 Score=36.05 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=22.3
Q ss_pred CceEEEEccCCccHHHHH--H-HHHHcCCCEEEE-ccH
Q 010836 77 RKVILHVGPTNSGKTHQA--L-SRLESSSSGIYC-GPL 110 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~--l-~~l~~~~~~l~l-~P~ 110 (499)
++-+++.|+-|||||+++ + ..+.++..++.. -|.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~ 39 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPG 39 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESST
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCC
Confidence 467889999999999996 3 334333344443 453
No 396
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=71.13 E-value=4.2 Score=38.68 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=23.6
Q ss_pred CceEEEEccCCccHHHHHHHHHHcCCCEEEE
Q 010836 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYC 107 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~l~~~~~~l~l 107 (499)
++.++|.||.|+|||..+-......+ .+|+
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~~~~-~~~~ 60 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLNERP-GILI 60 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHSS-EEEE
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHcC-cEEE
Confidence 47899999999999999766655544 6666
No 397
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=71.08 E-value=3.3 Score=38.21 Aligned_cols=52 Identities=12% Similarity=0.011 Sum_probs=34.0
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----cCCCEEEEccHHHHHHHHHHHHHhcCCce
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE----SSSSGIYCGPLRLLAWEVAKRLNKANVSC 128 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~----~~~~~l~l~P~r~La~q~~~~l~~~g~~~ 128 (499)
.+..+++.|.+|+|||+.+++.+. ++.+++|+.- -+-..++.++++.+|+.+
T Consensus 20 ~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~-~e~~~~l~~~~~~~G~dl 75 (260)
T 3bs4_A 20 HSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSI-SYPLQLIIRILSRFGVDV 75 (260)
T ss_dssp TCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEEC-SSCHHHHHHHHHHTTCCH
T ss_pred CCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEE-eCCHHHHHHHHHHcCCCH
Confidence 478889998888888877766654 3456777622 233345556666666654
No 398
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=70.88 E-value=14 Score=30.79 Aligned_cols=76 Identities=16% Similarity=0.090 Sum_probs=51.7
Q ss_pred ccHHHHHHHHHH--cCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecc----------cCCCceEEEceeeccc-
Q 010836 88 SGKTHQALSRLE--SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE----------VDGAKHRAVTVEMADV- 154 (499)
Q Consensus 88 sGKT~~~l~~l~--~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~~- 154 (499)
..|-......+. ..+++|+.++++.-+..+++.|.+.|+.+..++|+.... .....++++|.-....
T Consensus 20 ~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gl 99 (163)
T 2hjv_A 20 ENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGI 99 (163)
T ss_dssp GGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTC
T ss_pred HHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCC
Confidence 456655433332 356899999999999999999999999999999964321 1245677776422222
Q ss_pred -cCCccEEEE
Q 010836 155 -VSDYDCAVI 163 (499)
Q Consensus 155 -l~~~~~iVi 163 (499)
+..++++|.
T Consensus 100 d~~~~~~Vi~ 109 (163)
T 2hjv_A 100 DIENISLVIN 109 (163)
T ss_dssp CCSCCSEEEE
T ss_pred chhcCCEEEE
Confidence 356777775
No 399
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=70.82 E-value=8.5 Score=36.10 Aligned_cols=87 Identities=21% Similarity=0.197 Sum_probs=44.5
Q ss_pred CCceEEEEccCCccHHHHH--HHHH--HcCCCEEEE--ccHHHHHHHHHHHH-HhcCCceeEeeCCeecccCCCceEEEc
Q 010836 76 VRKVILHVGPTNSGKTHQA--LSRL--ESSSSGIYC--GPLRLLAWEVAKRL-NKANVSCDLITGQEREEVDGAKHRAVT 148 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~--l~~l--~~~~~~l~l--~P~r~La~q~~~~l-~~~g~~~~~~~g~~~~~~~~~~~iv~T 148 (499)
.++.+.++|++|+|||+.+ +..+ ..+++++++ -+.+..+.++...+ ...|+.+.. +... .++.-+ .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~--~~~~---~~p~~l--~ 169 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLE--VMDG---ESPESI--R 169 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEE--CCTT---CCHHHH--H
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEE--cCCC---CCHHHH--H
Confidence 4678888999999999985 2222 235677666 23344443322222 234444321 1110 000000 0
Q ss_pred eeeccc--cCCccEEEEecCccc
Q 010836 149 VEMADV--VSDYDCAVIDEIQML 169 (499)
Q Consensus 149 ~e~~~~--l~~~~~iViDEah~~ 169 (499)
...+.. ..+++++||||.=..
T Consensus 170 ~~~l~~~~~~~~D~viiDtpp~~ 192 (295)
T 1ls1_A 170 RRVEEKARLEARDLILVDTAGRL 192 (295)
T ss_dssp HHHHHHHHHHTCCEEEEECCCCS
T ss_pred HHHHHHHHhCCCCEEEEeCCCCc
Confidence 011111 267899999999544
No 400
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=70.60 E-value=4.1 Score=41.26 Aligned_cols=32 Identities=34% Similarity=0.337 Sum_probs=23.2
Q ss_pred CCceEEEEccCCccHHHHH--HHHHH--cCCCEEEE
Q 010836 76 VRKVILHVGPTNSGKTHQA--LSRLE--SSSSGIYC 107 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~--l~~l~--~~~~~l~l 107 (499)
.+..+.++|++|||||+.+ +..++ .++++++.
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 4778999999999999985 33222 35666665
No 401
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=70.16 E-value=11 Score=33.20 Aligned_cols=76 Identities=14% Similarity=0.103 Sum_probs=52.3
Q ss_pred CccHHHHHHHHH--HcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecc----------cCCCceEEEceeecc-
Q 010836 87 NSGKTHQALSRL--ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE----------VDGAKHRAVTVEMAD- 153 (499)
Q Consensus 87 GsGKT~~~l~~l--~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~- 153 (499)
...|.......+ ...+++||.++++.-+..+++.+.+.|..+..++|+.... .....++++|. ++.
T Consensus 15 ~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~-~~~~ 93 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD-VAAR 93 (212)
T ss_dssp TTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT-TTTC
T ss_pred HHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC-hhhc
Confidence 356766654433 3467899999999999999999999999999999974321 12455667764 222
Q ss_pred --ccCCccEEEE
Q 010836 154 --VVSDYDCAVI 163 (499)
Q Consensus 154 --~l~~~~~iVi 163 (499)
.+..+++||.
T Consensus 94 Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 94 GLDIPQVDLVVH 105 (212)
T ss_dssp SSSCCCBSEEEE
T ss_pred CCCCccCcEEEE
Confidence 2356777763
No 402
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=70.09 E-value=2.1 Score=46.28 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=17.6
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
....+++++||+|+|||..+
T Consensus 199 ~~~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHH
T ss_pred CCCCCeEEECCCCCCHHHHH
Confidence 35678999999999999996
No 403
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=69.95 E-value=3.2 Score=39.35 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=21.9
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcC
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLESS 101 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~~ 101 (499)
.++-+++.|+.|+|||+.++..+.++
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~~G 171 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLINKN 171 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTTT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHcC
Confidence 48889999999999999988766543
No 404
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=69.85 E-value=20 Score=29.86 Aligned_cols=74 Identities=12% Similarity=0.054 Sum_probs=50.6
Q ss_pred HHHHHHHHHH--cCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecc----------cCCCceEEEceeeccc--c
Q 010836 90 KTHQALSRLE--SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE----------VDGAKHRAVTVEMADV--V 155 (499)
Q Consensus 90 KT~~~l~~l~--~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~~--l 155 (499)
|.......+. ..+++|+.++++.-+..+++.+.+.|..+..++|+.... .....++++|.-.... +
T Consensus 17 K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~ 96 (165)
T 1fuk_A 17 KYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDV 96 (165)
T ss_dssp HHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCC
T ss_pred HHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCc
Confidence 6655444343 346899999999999999999999999999999864321 1244666766422222 3
Q ss_pred CCccEEEE
Q 010836 156 SDYDCAVI 163 (499)
Q Consensus 156 ~~~~~iVi 163 (499)
..++++|.
T Consensus 97 ~~~~~Vi~ 104 (165)
T 1fuk_A 97 QQVSLVIN 104 (165)
T ss_dssp CSCSEEEE
T ss_pred ccCCEEEE
Confidence 56777765
No 405
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=69.85 E-value=15 Score=41.65 Aligned_cols=79 Identities=9% Similarity=0.164 Sum_probs=61.4
Q ss_pred CCEEEEe-eHHHHHHHHHHHHHcC---CCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecc-hhhccccc-cccEEE
Q 010836 240 GDCIVTF-SRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD-AIGMGLNL-NISRII 313 (499)
Q Consensus 240 ~~~iv~~-s~~~~~~l~~~L~~~~---~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~-~~~~Gidi-pv~~VI 313 (499)
.+++|.. ++.-+.+.++.+.+.. ..++..++|..+..++..+.+.+.+ |..+|+|+|. .+...+.+ .++.||
T Consensus 653 ~~vlvlvPt~~La~Q~~~~~~~~~~~~~i~v~~l~~~~~~~~~~~~~~~l~~--g~~dIvV~T~~ll~~~~~~~~l~lvI 730 (1151)
T 2eyq_A 653 KQVAVLVPTTLLAQQHYDNFRDRFANWPVRIEMISRFRSAKEQTQILAEVAE--GKIDILIGTHKLLQSDVKFKDLGLLI 730 (1151)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHSTTTTCCEEEESTTSCHHHHHHHHHHHHT--TCCSEEEECTHHHHSCCCCSSEEEEE
T ss_pred CeEEEEechHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCHHHHHHHHHHHhc--CCCCEEEECHHHHhCCccccccceEE
Confidence 3455555 7888888888887542 2478999999999999999999998 9999999995 55556777 488888
Q ss_pred Ecccccc
Q 010836 314 FSTMKKF 320 (499)
Q Consensus 314 ~~~~~~~ 320 (499)
......|
T Consensus 731 iDEaH~~ 737 (1151)
T 2eyq_A 731 VDEEHRF 737 (1151)
T ss_dssp EESGGGS
T ss_pred EechHhc
Confidence 7766654
No 406
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=69.79 E-value=2.2 Score=40.95 Aligned_cols=17 Identities=35% Similarity=0.593 Sum_probs=15.2
Q ss_pred ceEEEEccCCccHHHHH
Q 010836 78 KVILHVGPTNSGKTHQA 94 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~ 94 (499)
.++++.||+|+|||+.+
T Consensus 59 ~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45999999999999886
No 407
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=69.68 E-value=2.5 Score=37.81 Aligned_cols=19 Identities=42% Similarity=0.478 Sum_probs=17.2
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
++..+++.|+.|||||+++
T Consensus 4 ~g~~i~~eG~~g~GKst~~ 22 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQC 22 (216)
T ss_dssp CCCEEEEEECSSSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4788999999999999986
No 408
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=69.66 E-value=2.9 Score=39.50 Aligned_cols=17 Identities=41% Similarity=0.630 Sum_probs=15.3
Q ss_pred ceEEEEccCCccHHHHH
Q 010836 78 KVILHVGPTNSGKTHQA 94 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~ 94 (499)
..+++.||+|+|||+.+
T Consensus 47 ~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 47 PHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp CEEEEESCTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 36999999999999986
No 409
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=69.62 E-value=14 Score=31.27 Aligned_cols=83 Identities=16% Similarity=0.001 Sum_probs=53.9
Q ss_pred EEEccCCccHHHHHHHHHHc--CCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecc----------cCCCceEEEc
Q 010836 81 LHVGPTNSGKTHQALSRLES--SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE----------VDGAKHRAVT 148 (499)
Q Consensus 81 li~apTGsGKT~~~l~~l~~--~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~----------~~~~~~iv~T 148 (499)
++..+....|-......+.. .+++|+.++++..+..+++.+.+.|..+..++|+.... .....++++|
T Consensus 12 ~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT 91 (175)
T 2rb4_A 12 YVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITT 91 (175)
T ss_dssp EEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEEC
T ss_pred EEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEe
Confidence 33444333455444333332 35789999999999999999999999999999974321 1245677777
Q ss_pred eeeccc--cCCccEEEE
Q 010836 149 VEMADV--VSDYDCAVI 163 (499)
Q Consensus 149 ~e~~~~--l~~~~~iVi 163 (499)
.-.... +..+++||.
T Consensus 92 ~~~~~Gid~~~~~~Vi~ 108 (175)
T 2rb4_A 92 NVCARGIDVKQVTIVVN 108 (175)
T ss_dssp CSCCTTTCCTTEEEEEE
T ss_pred cchhcCCCcccCCEEEE
Confidence 422222 356777775
No 410
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=69.52 E-value=2.6 Score=39.02 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=15.7
Q ss_pred ceEEEEccCCccHHHHHH
Q 010836 78 KVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~l 95 (499)
+.+++.||.|+|||+.+.
T Consensus 105 n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 469999999999998865
No 411
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=69.42 E-value=2.1 Score=38.60 Aligned_cols=20 Identities=30% Similarity=0.303 Sum_probs=14.7
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+++.|+.|||||+++
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~ 42 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHL 42 (227)
T ss_dssp CCCCEEEEECCC---CHHHH
T ss_pred cCCeEEEEECCCCCCHHHHH
Confidence 35788999999999999986
No 412
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=69.29 E-value=6.7 Score=39.93 Aligned_cols=32 Identities=6% Similarity=-0.119 Sum_probs=25.4
Q ss_pred CCceEEEEccCCccHHHHHHHHHH----c-CCCEEEE
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLE----S-SSSGIYC 107 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~----~-~~~~l~l 107 (499)
.+..+++.|++|+|||..+++.+. . +.+++|+
T Consensus 241 ~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~ 277 (503)
T 1q57_A 241 GGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLA 277 (503)
T ss_dssp TTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEE
T ss_pred CCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEE
Confidence 588999999999999999876553 2 3467777
No 413
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=69.05 E-value=8.4 Score=43.41 Aligned_cols=76 Identities=13% Similarity=0.217 Sum_probs=59.8
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcC--CCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecch-----hhccccc-cc
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRG--KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA-----IGMGLNL-NI 309 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~--~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~-----~~~Gidi-pv 309 (499)
...++|.. ++.-+.++++.+++.+ ...+..+||+.+..+|....+.+.+ +..+|+|+|.- +.. +++ .+
T Consensus 121 ~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~--g~~~IlV~Tp~rL~~~l~~-l~~~~l 197 (1104)
T 4ddu_A 121 GKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEE--DDYHILVFSTQFVSKNREK-LSQKRF 197 (1104)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHT--SCCSEEEEEHHHHHHSHHH-HHTSCC
T ss_pred CCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhC--CCCCEEEECHHHHHHHHHh-hcccCc
Confidence 44566666 8999999999998843 3389999999999888899999998 88999999962 222 445 48
Q ss_pred cEEEEccc
Q 010836 310 SRIIFSTM 317 (499)
Q Consensus 310 ~~VI~~~~ 317 (499)
++||....
T Consensus 198 ~~lViDEa 205 (1104)
T 4ddu_A 198 DFVFVDDV 205 (1104)
T ss_dssp SEEEESCH
T ss_pred CEEEEeCC
Confidence 88887666
No 414
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=68.98 E-value=2.5 Score=38.90 Aligned_cols=19 Identities=26% Similarity=0.165 Sum_probs=16.7
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
+...+++.|+.|||||+++
T Consensus 23 ~~~~I~ieG~~GsGKST~~ 41 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFV 41 (263)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CceEEEEECCCCCCHHHHH
Confidence 3578899999999999986
No 415
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=68.90 E-value=4.6 Score=38.06 Aligned_cols=86 Identities=16% Similarity=0.090 Sum_probs=44.2
Q ss_pred CceEEEEccCCccHHHHHH--H-HH-HcCCCEEEE--ccHHHHHHHHHHHHH-hcCCceeEeeCCeecccCCCceEEEce
Q 010836 77 RKVILHVGPTNSGKTHQAL--S-RL-ESSSSGIYC--GPLRLLAWEVAKRLN-KANVSCDLITGQEREEVDGAKHRAVTV 149 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l--~-~l-~~~~~~l~l--~P~r~La~q~~~~l~-~~g~~~~~~~g~~~~~~~~~~~iv~T~ 149 (499)
++.+++.|++|+|||+.+. . .+ ..+++++++ -+.+..+.++.+.+. ..|+++. .+... .+...+ ..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~--~~~~~---~~p~~~--~~ 170 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVY--GEPGE---KDVVGI--AK 170 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEE--CCTTC---CCHHHH--HH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEE--ecCCC---CCHHHH--HH
Confidence 6788889999999999852 2 22 245677666 344444444333332 3344432 22110 000000 00
Q ss_pred eecccc--CCccEEEEecCccc
Q 010836 150 EMADVV--SDYDCAVIDEIQML 169 (499)
Q Consensus 150 e~~~~l--~~~~~iViDEah~~ 169 (499)
+.+..+ .+++++|||=+-..
T Consensus 171 ~~l~~~~~~~~D~ViIDTpg~~ 192 (297)
T 1j8m_F 171 RGVEKFLSEKMEIIIVDTAGRH 192 (297)
T ss_dssp HHHHHHHHTTCSEEEEECCCSC
T ss_pred HHHHHHHhCCCCEEEEeCCCCc
Confidence 112222 67889999987554
No 416
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=68.79 E-value=2.3 Score=40.82 Aligned_cols=15 Identities=40% Similarity=0.736 Sum_probs=14.2
Q ss_pred EEEEccCCccHHHHH
Q 010836 80 ILHVGPTNSGKTHQA 94 (499)
Q Consensus 80 vli~apTGsGKT~~~ 94 (499)
+++.||+|+|||+.+
T Consensus 49 ~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTI 63 (340)
T ss_dssp EEEECSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 899999999999986
No 417
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=68.71 E-value=2.7 Score=37.89 Aligned_cols=20 Identities=35% Similarity=0.345 Sum_probs=17.3
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+.+.|+.|||||+++
T Consensus 14 ~~~~~i~i~G~~gsGKst~~ 33 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVA 33 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHH
Confidence 34678999999999999986
No 418
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=68.69 E-value=5.4 Score=35.89 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=16.2
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
+-++++.++.|+|||+.++
T Consensus 6 ~l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp CEEEEEESSTTSSHHHHHH
T ss_pred eEEEEEECCCCCcHHHHHH
Confidence 3468999999999999964
No 419
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=68.66 E-value=2.6 Score=39.61 Aligned_cols=64 Identities=13% Similarity=0.131 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHcCCCeEEEE---cCCCCHHHHHHHHHHh-cCCCCCccEEEecchhhccccccccEEEEc
Q 010836 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRF-NDASSEFDVLVASDAIGMGLNLNISRIIFS 315 (499)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~~---hg~l~~~~R~~~~~~f-~~~~g~~~iLvaT~~~~~Gidipv~~VI~~ 315 (499)
.+.--.++..|-... ++.++ .+++++..+..+.+.+ +.-....-||++|--... +.. ++.|+..
T Consensus 164 q~QRv~lAraL~~~p--~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~-~~~-~d~i~~l 231 (290)
T 2bbs_A 164 QRARISLARAVYKDA--DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEH-LKK-ADKILIL 231 (290)
T ss_dssp HHHHHHHHHHHHSCC--SEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHH-HHH-SSEEEEE
T ss_pred HHHHHHHHHHHHCCC--CEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHH-HHc-CCEEEEE
Confidence 445556677775543 46666 4789999888888753 220012345555543322 122 5555543
No 420
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=68.56 E-value=2.6 Score=41.23 Aligned_cols=19 Identities=42% Similarity=0.593 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.++.+++.||+|+|||+.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~ 186 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLA 186 (377)
T ss_dssp TCCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4789999999999999875
No 421
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=68.49 E-value=3.4 Score=35.52 Aligned_cols=17 Identities=18% Similarity=0.216 Sum_probs=14.9
Q ss_pred ceEEEEccCCccHHHHH
Q 010836 78 KVILHVGPTNSGKTHQA 94 (499)
Q Consensus 78 ~~vli~apTGsGKT~~~ 94 (499)
..++++|+.|||||+..
T Consensus 7 ~~i~i~G~sGsGKTTl~ 23 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLL 23 (174)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred eEEEEEeCCCCCHHHHH
Confidence 56889999999999874
No 422
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=67.99 E-value=2.7 Score=38.09 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=15.6
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
+..+++.|+.|||||+++
T Consensus 2 ~~~i~~~G~~g~GKtt~~ 19 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFV 19 (241)
T ss_dssp CEEEEEEECTTSSHHHHH
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 467899999999999875
No 423
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=67.87 E-value=2.6 Score=40.52 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=16.8
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
......+++||+|+|||...
T Consensus 21 f~~~~~~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 21 FKEGINLIIGQNGSGKSSLL 40 (339)
T ss_dssp CCSEEEEEECCTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34667899999999999983
No 424
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=67.35 E-value=5 Score=41.17 Aligned_cols=32 Identities=19% Similarity=0.432 Sum_probs=24.3
Q ss_pred CCceEEEEccCCccHHHHHHH----HHHc-CCCEEEE
Q 010836 76 VRKVILHVGPTNSGKTHQALS----RLES-SSSGIYC 107 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~----~l~~-~~~~l~l 107 (499)
.+..+.+.||+|||||+.+.. -+.. +...+++
T Consensus 38 ~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v 74 (525)
T 1tf7_A 38 IGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFV 74 (525)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEE
Confidence 589999999999999999754 3333 4456666
No 425
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=67.30 E-value=2.7 Score=42.89 Aligned_cols=18 Identities=56% Similarity=0.748 Sum_probs=15.7
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
.+.+++.||+|+|||+.+
T Consensus 64 p~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp CSEEEEECSSSSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 345999999999999886
No 426
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=67.04 E-value=2.8 Score=41.60 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=17.6
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~ 96 (499)
....++++|+.|||||+.+-.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~ 277 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQE 277 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHH
Confidence 357889999999999988744
No 427
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=66.73 E-value=3 Score=38.61 Aligned_cols=49 Identities=8% Similarity=0.102 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHcCCCeEEEE---cCCCCHHHHHHHHHHhcCCCCCccEEEecch
Q 010836 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFNDASSEFDVLVASDA 300 (499)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~~---hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~ 300 (499)
.+.--.++..|...+ ++..+ .+++++..+..+.+.+++ -..-||++|--
T Consensus 133 qkqRv~lAraL~~~p--~lllLDEPts~LD~~~~~~l~~~L~~--~~~tviivtHd 184 (263)
T 2pjz_A 133 QSVLVRTSLALASQP--EIVGLDEPFENVDAARRHVISRYIKE--YGKEGILVTHE 184 (263)
T ss_dssp HHHHHHHHHHHHTCC--SEEEEECTTTTCCHHHHHHHHHHHHH--SCSEEEEEESC
T ss_pred HHHHHHHHHHHHhCC--CEEEEECCccccCHHHHHHHHHHHHH--hcCcEEEEEcC
Confidence 344455666675544 46666 488999999888887766 21156666643
No 428
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=66.41 E-value=3.1 Score=37.90 Aligned_cols=50 Identities=8% Similarity=0.060 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHcCCCeEEEE---cCCCCHHHHHHHHHHhcC--CCCCccEEEecc
Q 010836 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND--ASSEFDVLVASD 299 (499)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~~---hg~l~~~~R~~~~~~f~~--~~g~~~iLvaT~ 299 (499)
.+.--.++..|-... ++..+ .+++++..+..+.+.+++ .....-||++|-
T Consensus 131 qkqRv~lAral~~~p--~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtH 185 (240)
T 2onk_A 131 ERQRVALARALVIQP--RLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTH 185 (240)
T ss_dssp HHHHHHHHHHHTTCC--SSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred HHHHHHHHHHHHcCC--CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 344445666665443 35555 478899888777766543 011234666664
No 429
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=66.01 E-value=1.7 Score=40.94 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=12.8
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
+..+.|.||.|||||+++
T Consensus 5 ~~iIgItG~sGSGKSTva 22 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVK 22 (290)
T ss_dssp SCEEEEESCC---CCTHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 457889999999999986
No 430
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=65.82 E-value=3.3 Score=40.20 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=15.3
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
+--++..|.||||||+..
T Consensus 105 N~tifAYGQTGSGKTyTM 122 (359)
T 3nwn_A 105 NGTIMCYGQTGAGKTYTM 122 (359)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CEEEEEeCCCCCCccEEe
Confidence 556778999999999885
No 431
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=65.81 E-value=11 Score=37.44 Aligned_cols=62 Identities=15% Similarity=0.022 Sum_probs=45.2
Q ss_pred cCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeeccc------CCCceEEEceeec--cccCCccEEE
Q 010836 100 SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREEV------DGAKHRAVTVEMA--DVVSDYDCAV 162 (499)
Q Consensus 100 ~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~~------~~~~~iv~T~e~~--~~l~~~~~iV 162 (499)
..++++|.+|++.-+..+++.+++.|.++..++|+++... ....++|+|.-.. -.+. +++||
T Consensus 176 ~~~~~lVF~~s~~~a~~l~~~L~~~~~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI 245 (440)
T 1yks_A 176 DKRPTAWFLPSIRAANVMAASLRKAGKSVVVLNRKTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVL 245 (440)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEECCSSSCC--------CCCSEEEESSSTTCCTTCC-CSEEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHHcCCCEEEecchhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEE
Confidence 3568899999999999999999999999999999654321 2456777776221 1234 77766
No 432
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=65.45 E-value=3.1 Score=40.40 Aligned_cols=19 Identities=21% Similarity=0.445 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+.+.||.|||||+..
T Consensus 29 ~Ge~~~llGpsGsGKSTLL 47 (359)
T 3fvq_A 29 PGEILFIIGASGCGKTTLL 47 (359)
T ss_dssp TTCEEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCchHHHHH
Confidence 5889999999999999874
No 433
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=65.44 E-value=6.8 Score=42.30 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=24.3
Q ss_pred CceEEEEccCCccHHHHHHHHHHcCCCEEEEccH
Q 010836 77 RKVILHVGPTNSGKTHQALSRLESSSSGIYCGPL 110 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~~l~~~~~~l~l~P~ 110 (499)
.+.++++||+|+|||+.+-....+-+..++.+..
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~ 271 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLING 271 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEh
Confidence 5789999999999999975544444544554433
No 434
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=65.43 E-value=3.2 Score=36.27 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=16.8
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+++.|++|+|||+..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl 43 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSAL 43 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHH
Confidence 34678999999999999764
No 435
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=65.32 E-value=5.2 Score=35.06 Aligned_cols=31 Identities=32% Similarity=0.278 Sum_probs=20.4
Q ss_pred EEEEccCCccHHHHH---HHHHHcCC-CEEEE-ccH
Q 010836 80 ILHVGPTNSGKTHQA---LSRLESSS-SGIYC-GPL 110 (499)
Q Consensus 80 vli~apTGsGKT~~~---l~~l~~~~-~~l~l-~P~ 110 (499)
+++.|+-|||||+++ ..+|...+ .+++. -|.
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~ 38 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPG 38 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 578899999999996 24454444 34433 453
No 436
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=65.18 E-value=8.4 Score=38.26 Aligned_cols=53 Identities=28% Similarity=0.298 Sum_probs=31.4
Q ss_pred CCceEEEEccCCccHHHHH--HH-HHH-cCCCEEEE--ccHHHHHHHHHHHHH-hcCCce
Q 010836 76 VRKVILHVGPTNSGKTHQA--LS-RLE-SSSSGIYC--GPLRLLAWEVAKRLN-KANVSC 128 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~--l~-~l~-~~~~~l~l--~P~r~La~q~~~~l~-~~g~~~ 128 (499)
.++.+.+.|++|+|||+.+ +. .+. .+++++++ =+.+..+.++...+. ..|+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v 156 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV 156 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccE
Confidence 3677888999999999985 22 222 34566665 244555544333333 335443
No 437
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=64.99 E-value=3.6 Score=39.35 Aligned_cols=20 Identities=40% Similarity=0.484 Sum_probs=16.0
Q ss_pred CCceEEEEccCCccHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l 95 (499)
-+-.++..|.||||||+...
T Consensus 77 ~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 77 YNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp CCEEEEEECSTTSSHHHHHT
T ss_pred CeEEEEEECCCCCCCceEec
Confidence 35567789999999998863
No 438
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=64.95 E-value=18 Score=30.49 Aligned_cols=77 Identities=12% Similarity=-0.015 Sum_probs=52.8
Q ss_pred CccHHHHHHHHHH--cCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecc----------cCCCceEEEceeeccc
Q 010836 87 NSGKTHQALSRLE--SSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE----------VDGAKHRAVTVEMADV 154 (499)
Q Consensus 87 GsGKT~~~l~~l~--~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~~ 154 (499)
...|.......+. ..+++|+.++++.-+..+++.+.+.|+.+..++|+.... .....++++|.-....
T Consensus 15 ~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~G 94 (172)
T 1t5i_A 15 DNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRG 94 (172)
T ss_dssp GGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTT
T ss_pred hHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcC
Confidence 3557655444443 346899999999999999999999999999999974321 2245677777422221
Q ss_pred --cCCccEEEE
Q 010836 155 --VSDYDCAVI 163 (499)
Q Consensus 155 --l~~~~~iVi 163 (499)
+..++++|.
T Consensus 95 ldi~~~~~Vi~ 105 (172)
T 1t5i_A 95 MDIERVNIAFN 105 (172)
T ss_dssp CCGGGCSEEEE
T ss_pred cchhhCCEEEE
Confidence 356677775
No 439
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=64.61 E-value=5.2 Score=37.95 Aligned_cols=26 Identities=23% Similarity=0.311 Sum_probs=22.3
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcC
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLESS 101 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~~ 101 (499)
.++-+++.|+.|+|||+.++..+..+
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhcC
Confidence 47899999999999999988877653
No 440
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=64.55 E-value=3 Score=43.66 Aligned_cols=19 Identities=21% Similarity=0.478 Sum_probs=17.6
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.++.+++.||+|+|||+.+
T Consensus 59 ~g~~vll~Gp~GtGKTtla 77 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLG 77 (604)
T ss_dssp TTCCEEEECCTTSSHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHH
Confidence 5789999999999999996
No 441
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=64.42 E-value=6.3 Score=42.77 Aligned_cols=21 Identities=38% Similarity=0.441 Sum_probs=17.8
Q ss_pred CCceEEEEccCCccHHHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~ 96 (499)
.++.++++||+|+|||+.+-.
T Consensus 237 ~~~~vLL~Gp~GtGKTtLara 257 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARA 257 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHH
Confidence 467899999999999988643
No 442
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=64.33 E-value=3.4 Score=40.06 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=17.6
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+.+.||.|||||+..
T Consensus 39 ~~Ge~~~llGpnGsGKSTLL 58 (355)
T 1z47_A 39 REGEMVGLLGPSGSGKTTIL 58 (355)
T ss_dssp ETTCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCcHHHHH
Confidence 35899999999999999874
No 443
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=64.27 E-value=3.8 Score=39.46 Aligned_cols=19 Identities=26% Similarity=0.343 Sum_probs=15.9
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
-+--++..|.||||||+..
T Consensus 94 ~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 94 FQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp CCEEEEEESSTTSSHHHHH
T ss_pred CceEEEEecCCCCCCCeEE
Confidence 3566788999999999985
No 444
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=64.09 E-value=16 Score=31.63 Aligned_cols=77 Identities=12% Similarity=0.007 Sum_probs=53.1
Q ss_pred CccHHHHHHHHHHc-CCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecc----------cCCCceEEEceeecc--
Q 010836 87 NSGKTHQALSRLES-SSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE----------VDGAKHRAVTVEMAD-- 153 (499)
Q Consensus 87 GsGKT~~~l~~l~~-~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~~-- 153 (499)
...|.......+.. .+++|+.++++.-+..+++.|.+.|+.+..++|+.... .....++++|.-...
T Consensus 39 ~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gl 118 (191)
T 2p6n_A 39 EEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGL 118 (191)
T ss_dssp GGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTC
T ss_pred hHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCC
Confidence 35676655555543 45789999999999999999999999999999974321 124567777742111
Q ss_pred ccCCccEEEE
Q 010836 154 VVSDYDCAVI 163 (499)
Q Consensus 154 ~l~~~~~iVi 163 (499)
.+..++++|.
T Consensus 119 di~~v~~VI~ 128 (191)
T 2p6n_A 119 DFPAIQHVIN 128 (191)
T ss_dssp CCCCCSEEEE
T ss_pred CcccCCEEEE
Confidence 2356777765
No 445
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=63.95 E-value=9.1 Score=38.92 Aligned_cols=86 Identities=17% Similarity=0.151 Sum_probs=43.1
Q ss_pred CceEEEEccCCccHHHHHHH---HHHc-CCCEEEEc--cHHHHHHHHHHHH-HhcCCceeEeeCCeecccCCCceEEEce
Q 010836 77 RKVILHVGPTNSGKTHQALS---RLES-SSSGIYCG--PLRLLAWEVAKRL-NKANVSCDLITGQEREEVDGAKHRAVTV 149 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l~---~l~~-~~~~l~l~--P~r~La~q~~~~l-~~~g~~~~~~~g~~~~~~~~~~~iv~T~ 149 (499)
.+.++++|++|+|||+.+.. .+.. +.+++++. |.|..+.++.+.. ...++++...... . +...+ ..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~-~----dp~~i--~~ 173 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTE-M----DPVII--AS 173 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCC-S----CHHHH--HH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCC-C----CHHHH--HH
Confidence 45788999999999999632 2333 45666663 3344443333332 2334443221000 0 00000 00
Q ss_pred eecccc--CCccEEEEecCccc
Q 010836 150 EMADVV--SDYDCAVIDEIQML 169 (499)
Q Consensus 150 e~~~~l--~~~~~iViDEah~~ 169 (499)
+.+..+ ..++++|||-+=..
T Consensus 174 ~al~~~~~~~~DvvIIDTpG~~ 195 (504)
T 2j37_W 174 EGVEKFKNENFEIIIVDTSGRH 195 (504)
T ss_dssp HHHHHHHHTTCCEEEEEECCCC
T ss_pred HHHHHHHHCCCcEEEEeCCCCc
Confidence 111112 57899999988654
No 446
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=63.80 E-value=24 Score=30.79 Aligned_cols=74 Identities=18% Similarity=0.310 Sum_probs=51.4
Q ss_pred CEEEEe-eHHHHHHHHHHHHHcC----CCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecch-----hhc-ccccc-
Q 010836 241 DCIVTF-SRHAIYRLKKAIESRG----KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA-----IGM-GLNLN- 308 (499)
Q Consensus 241 ~~iv~~-s~~~~~~l~~~L~~~~----~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~-----~~~-Gidip- 308 (499)
.++|+. ++.-+.++++.+++.. ...+..++|+.+...+.. .+.+ +..+|+|+|.- +.. .+++.
T Consensus 84 ~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~~~~--~~~~i~v~T~~~l~~~~~~~~~~~~~ 158 (220)
T 1t6n_A 84 SVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEE---VLKK--NCPHIVVGTPGRILALARNKSLNLKH 158 (220)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHH---HHHH--SCCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred EEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHH---HHhc--CCCCEEEeCHHHHHHHHHhCCCCccc
Confidence 566666 8898998888887753 458999999998775443 3444 66789999962 222 35564
Q ss_pred ccEEEEccccc
Q 010836 309 ISRIIFSTMKK 319 (499)
Q Consensus 309 v~~VI~~~~~~ 319 (499)
++.||......
T Consensus 159 ~~~lViDEah~ 169 (220)
T 1t6n_A 159 IKHFILDECDK 169 (220)
T ss_dssp CCEEEEESHHH
T ss_pred CCEEEEcCHHH
Confidence 88888766543
No 447
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=63.67 E-value=3.3 Score=38.43 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=14.1
Q ss_pred eEEEEccCCccHHHHH
Q 010836 79 VILHVGPTNSGKTHQA 94 (499)
Q Consensus 79 ~vli~apTGsGKT~~~ 94 (499)
++.+.||+|+|||+..
T Consensus 4 ~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999884
No 448
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=63.67 E-value=3.5 Score=40.33 Aligned_cols=19 Identities=26% Similarity=0.545 Sum_probs=17.1
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+.+.||.|||||+..
T Consensus 28 ~Ge~~~llGpsGsGKSTLL 46 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLL 46 (381)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEEcCCCchHHHHH
Confidence 5889999999999999874
No 449
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=63.59 E-value=3.3 Score=44.66 Aligned_cols=19 Identities=37% Similarity=0.373 Sum_probs=17.0
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+.+++++||+|+|||..+
T Consensus 206 ~~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp SSCEEEEECCTTSSHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHH
Confidence 5788999999999999875
No 450
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=63.23 E-value=6.9 Score=39.00 Aligned_cols=43 Identities=21% Similarity=0.169 Sum_probs=27.5
Q ss_pred CceEEEEccCCccHHHHHH---HHHH-c-CCCEEEE--ccHHHHHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL---SRLE-S-SSSGIYC--GPLRLLAWEVAK 119 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l---~~l~-~-~~~~l~l--~P~r~La~q~~~ 119 (499)
.+.++++|++|+|||+.+. .++. . +.+++++ =|.+..+.++..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~ 149 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLE 149 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHH
Confidence 4678889999999999963 2333 3 5577666 344544444433
No 451
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=63.21 E-value=3.6 Score=39.91 Aligned_cols=19 Identities=26% Similarity=0.461 Sum_probs=17.1
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+.+.||.|||||+..
T Consensus 28 ~Ge~~~llGpnGsGKSTLL 46 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTL 46 (359)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEEcCCCchHHHHH
Confidence 5889999999999999874
No 452
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=62.99 E-value=4 Score=36.69 Aligned_cols=20 Identities=35% Similarity=0.297 Sum_probs=17.4
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+++.|+.|||||+++
T Consensus 19 ~~~~~i~~~G~~g~GKst~~ 38 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQS 38 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 45788999999999999885
No 453
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=62.98 E-value=3.1 Score=40.37 Aligned_cols=19 Identities=42% Similarity=0.413 Sum_probs=15.5
Q ss_pred Cce--EEEEccCCccHHHHHH
Q 010836 77 RKV--ILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~--vli~apTGsGKT~~~l 95 (499)
+.+ ++..|.||||||+...
T Consensus 83 G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 83 GCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp CCEEEEEEECCTTSSHHHHHH
T ss_pred CceeEEEeeCCCCCCCCEEEe
Confidence 544 6889999999998863
No 454
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=62.95 E-value=3.7 Score=39.91 Aligned_cols=19 Identities=26% Similarity=0.441 Sum_probs=17.1
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+.+.||.|||||+..
T Consensus 28 ~Ge~~~llGpnGsGKSTLL 46 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLL 46 (362)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCchHHHHH
Confidence 5889999999999999884
No 455
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=62.91 E-value=3.8 Score=40.25 Aligned_cols=20 Identities=25% Similarity=0.242 Sum_probs=17.8
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+.+.||+|||||+..
T Consensus 45 ~~Ge~~~llGpsGsGKSTLL 64 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLL 64 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHH
T ss_pred cCCCEEEEECCCCChHHHHH
Confidence 35899999999999999884
No 456
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=62.88 E-value=4.2 Score=38.21 Aligned_cols=16 Identities=25% Similarity=0.320 Sum_probs=14.6
Q ss_pred eEEEEccCCccHHHHH
Q 010836 79 VILHVGPTNSGKTHQA 94 (499)
Q Consensus 79 ~vli~apTGsGKT~~~ 94 (499)
++++.||+|+|||..+
T Consensus 44 ~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 44 HMIISGMPGIGKTTSV 59 (323)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEECcCCCCHHHHH
Confidence 4999999999999886
No 457
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=62.80 E-value=4.2 Score=39.53 Aligned_cols=18 Identities=44% Similarity=0.610 Sum_probs=15.2
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
+-.++..|.||||||+..
T Consensus 85 n~tifAYGqTGSGKTyTm 102 (365)
T 2y65_A 85 NGTIFAYGQTSSGKTHTM 102 (365)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred ceEEEeecCCCCCCceEE
Confidence 456777999999999885
No 458
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=62.68 E-value=3.5 Score=39.51 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=15.5
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
-+--++..|.||||||+..
T Consensus 80 ~n~tifAYGqTGSGKTyTm 98 (330)
T 2h58_A 80 FNVCIFAYGQTGAGKTYTM 98 (330)
T ss_dssp CCEEEEEESSTTSSHHHHH
T ss_pred CEEEEEeECCCCCCCcEEE
Confidence 3556778999999999885
No 459
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=62.37 E-value=3.8 Score=42.63 Aligned_cols=64 Identities=8% Similarity=0.160 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHcCCCeEEEE---cCCCCHHHHHHHHHHhcC-CCCCccEEEecchhhccccccccEEEEcc
Q 010836 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFST 316 (499)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~~---hg~l~~~~R~~~~~~f~~-~~g~~~iLvaT~~~~~Gidipv~~VI~~~ 316 (499)
.+.--.+++.|-..+ ++..+ .++++++.+..+.+.++. ..+. -+++.|--++. +. .+|.|+..+
T Consensus 482 q~Qrv~lAral~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~~~~-t~i~itH~l~~-~~-~~d~i~~l~ 549 (578)
T 4a82_A 482 QKQRLSIARIFLNNP--PILILDEATSALDLESESIIQEALDVLSKDR-TTLIVAHRLST-IT-HADKIVVIE 549 (578)
T ss_dssp HHHHHHHHHHHHHCC--SEEEEESTTTTCCHHHHHHHHHHHHHHTTTS-EEEEECSSGGG-TT-TCSEEEEEE
T ss_pred HHHHHHHHHHHHcCC--CEEEEECccccCCHHHHHHHHHHHHHHcCCC-EEEEEecCHHH-HH-cCCEEEEEE
Confidence 455566777776654 46666 478888887776655433 1144 34444433332 21 277776543
No 460
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=62.36 E-value=4.2 Score=39.30 Aligned_cols=19 Identities=37% Similarity=0.394 Sum_probs=15.6
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
-+-.++..|.||||||+..
T Consensus 77 ~n~tifAYGqTGSGKTyTM 95 (349)
T 1t5c_A 77 YNGTIFAYGQTASGKTYTM 95 (349)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CccceeeecCCCCCCCeEE
Confidence 3556777999999999875
No 461
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=62.32 E-value=4.3 Score=39.17 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=15.6
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
-+-.++..|.||||||+..
T Consensus 89 ~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 89 FNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CceeEEeecCCCCCCCEEe
Confidence 3566778999999999885
No 462
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=62.29 E-value=37 Score=26.06 Aligned_cols=46 Identities=17% Similarity=0.368 Sum_probs=37.6
Q ss_pred CEEEEe-e-HHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcC
Q 010836 241 DCIVTF-S-RHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFND 287 (499)
Q Consensus 241 ~~iv~~-s-~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~ 287 (499)
++.++| | ..-..++...++..+. ++..+|++-..+.|.+.++.|..
T Consensus 3 qifvvfssdpeilkeivreikrqgv-rvvllysdqdekrrrerleefek 50 (162)
T 2l82_A 3 QIFVVFSSDPEILKEIVREIKRQGV-RVVLLYSDQDEKRRRERLEEFEK 50 (162)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCSCHHHHHHHHHHHHT
T ss_pred eEEEEecCCHHHHHHHHHHHHhCCe-EEEEEecCchHHHHHHHHHHHHH
Confidence 344555 3 5666778888888887 99999999999999999999997
No 463
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=62.26 E-value=6.9 Score=40.09 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=30.1
Q ss_pred CCceEEEEccCCccHHHHHHHHH---H-cCCCEEEEccHHHHHHHHHHHHHhcC
Q 010836 76 VRKVILHVGPTNSGKTHQALSRL---E-SSSSGIYCGPLRLLAWEVAKRLNKAN 125 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l---~-~~~~~l~l~P~r~La~q~~~~l~~~g 125 (499)
.+..+++.||+|+|||+.+.+.+ . .+.+++|+++... ..|+..++..+|
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~-~~~l~~~~~~~g 332 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES-RAQLLRNAYSWG 332 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC-HHHHHHHHHTTS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcC
Confidence 58899999999999999964322 2 2345677754321 224444444333
No 464
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=62.18 E-value=22 Score=31.66 Aligned_cols=75 Identities=13% Similarity=0.251 Sum_probs=44.1
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcC---CCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecc-----hhhcc-cccc
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRG---KHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASD-----AIGMG-LNLN 308 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~---~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~-----~~~~G-idip 308 (499)
...++|+. ++.-+.++++.+++.+ ...+..++|+.+.. ...+.+.. +..+|+|+|. .+..+ +++.
T Consensus 98 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~---~~~~~l~~--~~~~Ilv~Tp~~l~~~l~~~~~~~~ 172 (237)
T 3bor_A 98 ETQALVLAPTRELAQQIQKVILALGDYMGATCHACIGGTNVR---NEMQKLQA--EAPHIVVGTPGRVFDMLNRRYLSPK 172 (237)
T ss_dssp SCCEEEECSSHHHHHHHHHHHHHHTTTTTCCEEEECC------------------CCCSEEEECHHHHHHHHHTTSSCST
T ss_pred CceEEEEECcHHHHHHHHHHHHHHhhhcCceEEEEECCCchH---HHHHHHhc--CCCCEEEECHHHHHHHHHhCCcCcc
Confidence 34566666 8999999988887754 24678888886654 33344555 6689999993 44444 5554
Q ss_pred -ccEEEEcccc
Q 010836 309 -ISRIIFSTMK 318 (499)
Q Consensus 309 -v~~VI~~~~~ 318 (499)
++.||.....
T Consensus 173 ~~~~lViDEah 183 (237)
T 3bor_A 173 WIKMFVLDEAD 183 (237)
T ss_dssp TCCEEEEESHH
T ss_pred cCcEEEECCch
Confidence 8888876554
No 465
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=62.02 E-value=3.3 Score=39.97 Aligned_cols=19 Identities=42% Similarity=0.522 Sum_probs=15.8
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
+--++..|.||||||+...
T Consensus 85 n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 85 NVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp CEEEEEECCTTSSHHHHHH
T ss_pred eeEEEEECCCCCCCcEecc
Confidence 5557789999999999864
No 466
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=61.98 E-value=3.6 Score=39.82 Aligned_cols=18 Identities=22% Similarity=0.394 Sum_probs=15.2
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
+-.++..|.||||||+..
T Consensus 81 n~tifAYGqTGSGKTyTm 98 (355)
T 1goj_A 81 NGTVFAYGQTGAGKSYTM 98 (355)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred cceEEEECCCCCCcceEe
Confidence 556777999999999875
No 467
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=61.88 E-value=4.4 Score=39.10 Aligned_cols=18 Identities=33% Similarity=0.445 Sum_probs=15.2
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
+--++..|.||||||+..
T Consensus 84 n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 84 NATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp CEEEEEESSTTSSHHHHH
T ss_pred CeeEEEecccCCCceEee
Confidence 556778999999999985
No 468
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=61.74 E-value=4 Score=39.85 Aligned_cols=19 Identities=26% Similarity=0.520 Sum_probs=17.2
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+.+.||.|||||+..
T Consensus 28 ~Ge~~~llGpnGsGKSTLL 46 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTL 46 (372)
T ss_dssp TTCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCcHHHHHH
Confidence 5889999999999999874
No 469
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=61.67 E-value=3.3 Score=40.29 Aligned_cols=18 Identities=39% Similarity=0.475 Sum_probs=14.6
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
+--++..|.||||||+..
T Consensus 80 n~tifAYGqTGSGKTyTM 97 (369)
T 3cob_A 80 NVCIFAYGQTGSGKTFTI 97 (369)
T ss_dssp EEEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCCeEee
Confidence 445667999999999885
No 470
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=61.67 E-value=3.4 Score=39.97 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=17.5
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+.+.||.|||||+..
T Consensus 24 ~~Ge~~~llGpnGsGKSTLL 43 (348)
T 3d31_A 24 ESGEYFVILGPTGAGKTLFL 43 (348)
T ss_dssp CTTCEEEEECCCTHHHHHHH
T ss_pred cCCCEEEEECCCCccHHHHH
Confidence 35889999999999999884
No 471
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=61.66 E-value=4.3 Score=39.51 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=15.5
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
-+-.++..|.||||||+..
T Consensus 101 ~n~tifAYGqTGSGKTyTM 119 (372)
T 3b6u_A 101 FNGTIFAYGQTGTGKTYTM 119 (372)
T ss_dssp CCEEEEEEESTTSSHHHHH
T ss_pred CeeeEEeecCCCCCCCEeE
Confidence 3556777999999999885
No 472
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=61.64 E-value=3.6 Score=42.95 Aligned_cols=16 Identities=25% Similarity=0.397 Sum_probs=14.8
Q ss_pred eEEEEccCCccHHHHH
Q 010836 79 VILHVGPTNSGKTHQA 94 (499)
Q Consensus 79 ~vli~apTGsGKT~~~ 94 (499)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999775
No 473
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=61.55 E-value=3.3 Score=40.83 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=15.3
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
+-.++..|.||||||+...
T Consensus 155 N~tifAYGQTGSGKTyTM~ 173 (410)
T 1v8k_A 155 KATCFAYGQTGSGKTHTMG 173 (410)
T ss_dssp EEEEEEEESTTSSHHHHHH
T ss_pred ceeEEeecCCCCCCCeEee
Confidence 4556779999999998853
No 474
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=61.54 E-value=4.4 Score=35.67 Aligned_cols=22 Identities=18% Similarity=-0.031 Sum_probs=17.1
Q ss_pred cCCceEEEEccCCccHHHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQALS 96 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~l~ 96 (499)
|++..+.+.|+.|||||+++-.
T Consensus 4 m~~~iI~i~g~~GsGk~ti~~~ 25 (201)
T 3fdi_A 4 MKQIIIAIGREFGSGGHLVAKK 25 (201)
T ss_dssp --CCEEEEEECTTSSHHHHHHH
T ss_pred CCCeEEEEeCCCCCCHHHHHHH
Confidence 4466899999999999998743
No 475
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=61.33 E-value=4.1 Score=39.75 Aligned_cols=19 Identities=26% Similarity=0.508 Sum_probs=17.1
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+.+.||.|||||+..
T Consensus 36 ~Ge~~~llGpnGsGKSTLL 54 (372)
T 1v43_A 36 DGEFLVLLGPSGCGKTTTL 54 (372)
T ss_dssp TTCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCChHHHHH
Confidence 5889999999999999874
No 476
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=61.30 E-value=3.5 Score=39.86 Aligned_cols=19 Identities=42% Similarity=0.485 Sum_probs=15.0
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
+--++..|.||||||+...
T Consensus 86 n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 86 NVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp EEEEEEECSTTSSHHHHHH
T ss_pred ceeEEEeCCCCCCCceEeC
Confidence 3445679999999999864
No 477
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=61.27 E-value=3.5 Score=39.96 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=15.2
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
+--++..|.||||||+..
T Consensus 106 n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 106 NCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEeCCCCCCceeee
Confidence 456778999999999885
No 478
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=61.26 E-value=3.4 Score=40.08 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=14.7
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
+--++..|.||||||+..
T Consensus 89 n~tifAYGqTGSGKTyTM 106 (359)
T 1x88_A 89 NCTIFAYGQTGTGKTFTM 106 (359)
T ss_dssp EEEEEEEECTTSSHHHHH
T ss_pred ceEEEEeCCCCCCCceEE
Confidence 445677999999999875
No 479
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=60.99 E-value=4.8 Score=39.40 Aligned_cols=18 Identities=44% Similarity=0.739 Sum_probs=14.9
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
+--++..|.||||||+..
T Consensus 99 N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 99 NASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp CEEEEEESCTTSSHHHHH
T ss_pred eeeEeeecCCCCCCCeEe
Confidence 455677999999999885
No 480
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=60.95 E-value=4.5 Score=39.33 Aligned_cols=20 Identities=15% Similarity=0.295 Sum_probs=17.6
Q ss_pred cCCceEEEEccCCccHHHHH
Q 010836 75 KVRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 75 ~~~~~vli~apTGsGKT~~~ 94 (499)
..+..+.+.||.|||||+..
T Consensus 52 ~~Gei~~IiGpnGaGKSTLl 71 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLI 71 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHH
T ss_pred cCCCEEEEEcCCCchHHHHH
Confidence 35899999999999999874
No 481
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=60.60 E-value=4.6 Score=39.05 Aligned_cols=18 Identities=33% Similarity=0.444 Sum_probs=15.1
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
+--++..|.||||||+..
T Consensus 93 n~tifAYGqTGSGKTyTm 110 (354)
T 3gbj_A 93 NACIFAYGQTGSGKSYTM 110 (354)
T ss_dssp CEEEEEEECTTSSHHHHH
T ss_pred eeEEEeeCCCCCCCceEE
Confidence 455678999999999885
No 482
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=60.56 E-value=4.8 Score=39.13 Aligned_cols=44 Identities=27% Similarity=0.423 Sum_probs=25.5
Q ss_pred CCceEEEEccCCccHHHHHHHHHHcCCCEEEEccHHHHHHHHHHHHHh
Q 010836 76 VRKVILHVGPTNSGKTHQALSRLESSSSGIYCGPLRLLAWEVAKRLNK 123 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l~~~~~~l~l~P~r~La~q~~~~l~~ 123 (499)
-+--++..|.||||||+...-.-.....+| .|+ .+.++++.+.+
T Consensus 89 ~N~tifAYGqTGSGKTyTm~G~~~~~~~Gi--ipr--~~~~lF~~i~~ 132 (366)
T 2zfi_A 89 YNVCIFAYGQTGAGKSYTMMGKQEKDQQGI--IPQ--LCEDLFSRIND 132 (366)
T ss_dssp CCEEEEEECSTTSSHHHHHTBCSGGGCBCH--HHH--HHHHHHHHHHT
T ss_pred CeeEEEEeCCCCCCCceEeeCCCccCCCcc--HHH--HHHHHHHHHhh
Confidence 355677799999999987531100111222 342 35667777764
No 483
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=60.53 E-value=4.8 Score=39.73 Aligned_cols=19 Identities=42% Similarity=0.524 Sum_probs=15.6
Q ss_pred CceEEEEccCCccHHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQAL 95 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~l 95 (499)
+--++..|.||||||+...
T Consensus 141 N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 141 NVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp CEEEEEESCTTSSHHHHHH
T ss_pred ceEEEEECCCCCCCceEeC
Confidence 4556779999999999864
No 484
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=60.42 E-value=3.8 Score=44.17 Aligned_cols=16 Identities=44% Similarity=0.665 Sum_probs=14.9
Q ss_pred eEEEEccCCccHHHHH
Q 010836 79 VILHVGPTNSGKTHQA 94 (499)
Q Consensus 79 ~vli~apTGsGKT~~~ 94 (499)
.+++.||||+|||..+
T Consensus 490 ~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 7999999999999886
No 485
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=60.18 E-value=4.8 Score=39.01 Aligned_cols=18 Identities=33% Similarity=0.434 Sum_probs=15.0
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
+--++..|.||||||+..
T Consensus 104 N~tIfAYGqTGSGKTyTM 121 (358)
T 2nr8_A 104 NGTIMCYGQTGAGKTYTM 121 (358)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred ceEEEEECCCCCCCceEe
Confidence 455677999999999885
No 486
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=60.00 E-value=3.8 Score=40.14 Aligned_cols=18 Identities=39% Similarity=0.564 Sum_probs=15.0
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
+-.++..|.||||||+..
T Consensus 135 N~tifAYGQTGSGKTyTM 152 (387)
T 2heh_A 135 KATCFAYGQTGSGKTHTM 152 (387)
T ss_dssp EEEEEEESCTTSSHHHHH
T ss_pred ceEEEEecCCCCCCCeEe
Confidence 455677999999999985
No 487
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=59.95 E-value=5 Score=39.11 Aligned_cols=19 Identities=32% Similarity=0.492 Sum_probs=15.9
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
-+--++..|.||||||+..
T Consensus 100 ~n~tifAYGqTGSGKTyTm 118 (373)
T 2wbe_C 100 YNCTVFAYGQTGTGKTHTM 118 (373)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred ceEEEEeecCCCCCcceec
Confidence 4566788999999999875
No 488
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=59.90 E-value=4.4 Score=42.19 Aligned_cols=64 Identities=9% Similarity=0.188 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHcCCCeEEEE---cCCCCHHHHHHHHHHhcC-CCCCccEEEecchhhccccccccEEEEcc
Q 010836 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFST 316 (499)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~~---hg~l~~~~R~~~~~~f~~-~~g~~~iLvaT~~~~~Gidipv~~VI~~~ 316 (499)
.+.--.+++.|-... ++..+ .++++++.+..+.+.+++ ..|..-|+|+-+. +. +. .+|.|+..+
T Consensus 485 q~qrl~iAral~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~-~~-~~-~~d~i~~l~ 552 (582)
T 3b60_A 485 QRQRIAIARALLRDS--PILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL-ST-IE-QADEIVVVE 552 (582)
T ss_dssp HHHHHHHHHHHHHCC--SEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCG-GG-TT-TCSEEEEEE
T ss_pred HHHHHHHHHHHHhCC--CEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccH-HH-HH-hCCEEEEEE
Confidence 455556777776654 46666 478999888777666544 1144434444443 22 22 277776543
No 489
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=59.79 E-value=24 Score=33.02 Aligned_cols=77 Identities=14% Similarity=0.071 Sum_probs=53.4
Q ss_pred CccHHHHHHHHH--HcCCCEEEEccHHHHHHHHHHHHHhcCCceeEeeCCeecc----------cCCCceEEEceeec--
Q 010836 87 NSGKTHQALSRL--ESSSSGIYCGPLRLLAWEVAKRLNKANVSCDLITGQEREE----------VDGAKHRAVTVEMA-- 152 (499)
Q Consensus 87 GsGKT~~~l~~l--~~~~~~l~l~P~r~La~q~~~~l~~~g~~~~~~~g~~~~~----------~~~~~~iv~T~e~~-- 152 (499)
...|-.+....+ ...+++|+.++++.-+..+++.+.+.|..+..++|+.... .....++++|.-..
T Consensus 12 ~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~G 91 (300)
T 3i32_A 12 VRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARG 91 (300)
T ss_dssp SSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCS
T ss_pred HHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcC
Confidence 356766654333 3467899999999999999999999999999999974321 12456777775211
Q ss_pred cccCCccEEEE
Q 010836 153 DVVSDYDCAVI 163 (499)
Q Consensus 153 ~~l~~~~~iVi 163 (499)
-.+..+++||.
T Consensus 92 idi~~v~~VI~ 102 (300)
T 3i32_A 92 LDIPQVDLVVH 102 (300)
T ss_dssp TTCCCCSEEEE
T ss_pred ccccceeEEEE
Confidence 12356777774
No 490
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=59.70 E-value=4.5 Score=42.20 Aligned_cols=63 Identities=11% Similarity=0.119 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHcCCCeEEEE---cCCCCHHHHHHHHHHhcC-CCCCccEEEecchhhccccccccEEEEc
Q 010836 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (499)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~~---hg~l~~~~R~~~~~~f~~-~~g~~~iLvaT~~~~~Gidipv~~VI~~ 315 (499)
.+.--.+++.|-... ++.++ .++++++.+..+.+.+++ ..+..-|+|+-+.-. +. .+|.|+..
T Consensus 484 qrQrv~lARal~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~--~~-~~d~i~vl 550 (587)
T 3qf4_A 484 QKQRLSIARALVKKP--KVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPT--AL-LADKILVL 550 (587)
T ss_dssp HHHHHHHHHHHHTCC--SEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHH--HT-TSSEEEEE
T ss_pred HHHHHHHHHHHHcCC--CEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHH--HH-hCCEEEEE
Confidence 455556777776544 46666 478888877776665543 125444454444422 11 36666654
No 491
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=59.62 E-value=4.4 Score=42.17 Aligned_cols=63 Identities=10% Similarity=0.166 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHcCCCeEEEE---cCCCCHHHHHHHHHHhcC-CCCCccEEEecchhhccccccccEEEEc
Q 010836 248 RHAIYRLKKAIESRGKHLCSIV---YGSLPPETRTRQATRFND-ASSEFDVLVASDAIGMGLNLNISRIIFS 315 (499)
Q Consensus 248 ~~~~~~l~~~L~~~~~~~v~~~---hg~l~~~~R~~~~~~f~~-~~g~~~iLvaT~~~~~Gidipv~~VI~~ 315 (499)
.+.--.+++.|-... ++..+ .++++++.+..+.+.+++ ..|..-|+|+-+.-. +. .+|.|+..
T Consensus 485 q~qr~~iAral~~~p--~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~--~~-~~d~i~~l 551 (582)
T 3b5x_A 485 QRQRVAIARALLRDA--PVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLST--IE-QADEILVV 551 (582)
T ss_pred HHHHHHHHHHHHcCC--CEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHH--HH-hCCEEEEE
Confidence 445556777775543 46665 478888888777766554 114443444444321 11 26666654
No 492
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=59.51 E-value=5.1 Score=39.61 Aligned_cols=19 Identities=37% Similarity=0.389 Sum_probs=15.5
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
-+--++..|.||||||+..
T Consensus 138 ~n~tifAYGqTGSGKTyTM 156 (412)
T 3u06_A 138 YNICIFAYGQTGSGKTYTM 156 (412)
T ss_dssp CCEEEEEESSTTSSHHHHH
T ss_pred CceEEEEecCCCCCCeeEe
Confidence 3556677999999999885
No 493
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=59.48 E-value=4.3 Score=40.86 Aligned_cols=19 Identities=26% Similarity=0.368 Sum_probs=17.4
Q ss_pred CCceEEEEccCCccHHHHH
Q 010836 76 VRKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~ 94 (499)
.+..+.+.||+|||||+..
T Consensus 137 ~Ge~v~IvGpnGsGKSTLl 155 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLS 155 (460)
T ss_dssp SCCCEEEEESTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 6889999999999999985
No 494
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=59.41 E-value=4.2 Score=39.52 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=16.4
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
++.+.+.||+|||||+.+
T Consensus 170 g~k~~IvG~nGsGKSTLl 187 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLV 187 (365)
T ss_dssp CEEEEEECCTTSHHHHHH
T ss_pred hCeEEEECCCCCCHHHHH
Confidence 678999999999999985
No 495
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=59.21 E-value=5.4 Score=40.67 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=16.4
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
..+++|.|+||||||+..
T Consensus 167 ~pHlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 167 MPHLLVAGTTGSGASVGV 184 (512)
T ss_dssp SCSEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 678999999999999984
No 496
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=59.13 E-value=4 Score=39.84 Aligned_cols=18 Identities=39% Similarity=0.455 Sum_probs=15.2
Q ss_pred CceEEEEccCCccHHHHH
Q 010836 77 RKVILHVGPTNSGKTHQA 94 (499)
Q Consensus 77 ~~~vli~apTGsGKT~~~ 94 (499)
+--++..|.||||||+..
T Consensus 116 N~tifAYGqTGSGKTyTM 133 (376)
T 2rep_A 116 PVCIFAYGQTGSGKTFTM 133 (376)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred ceEEEEeCCCCCCCceEe
Confidence 556778999999999875
No 497
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=58.90 E-value=3.9 Score=38.98 Aligned_cols=52 Identities=12% Similarity=0.066 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHH--cCCCeEEEE---cCCCCHHHHHHHHHHhcCCCCCccEEEecc
Q 010836 248 RHAIYRLKKAIES--RGKHLCSIV---YGSLPPETRTRQATRFNDASSEFDVLVASD 299 (499)
Q Consensus 248 ~~~~~~l~~~L~~--~~~~~v~~~---hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~ 299 (499)
.+.--.++..|.. .....+.++ .+++++..+..+.+.+++-.....|++.|-
T Consensus 224 q~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH 280 (322)
T 1e69_A 224 EKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITH 280 (322)
T ss_dssp HHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECC
T ss_pred HHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 4555566666653 122256665 588999988777666544111234555554
No 498
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=58.78 E-value=18 Score=37.51 Aligned_cols=79 Identities=13% Similarity=0.143 Sum_probs=57.6
Q ss_pred CCCEEEEe-eHHHHHHHHHHHHHcCCCeEEEEcCCCCHHHHHHHHHHhcCCCCCccEEEecch-h----------hcccc
Q 010836 239 TGDCIVTF-SRHAIYRLKKAIESRGKHLCSIVYGSLPPETRTRQATRFNDASSEFDVLVASDA-I----------GMGLN 306 (499)
Q Consensus 239 ~~~~iv~~-s~~~~~~l~~~L~~~~~~~v~~~hg~l~~~~R~~~~~~f~~~~g~~~iLvaT~~-~----------~~Gid 306 (499)
++.++|+. ++.-+.+..+.|.+.+. .+..++|+++..++..+.+.+....+..+|+++|.- + ....+
T Consensus 84 ~g~~lVisP~~~L~~q~~~~l~~~gi-~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~ 162 (591)
T 2v1x_A 84 DGFTLVICPLISLMEDQLMVLKQLGI-SATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYE 162 (591)
T ss_dssp SSEEEEECSCHHHHHHHHHHHHHHTC-CEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHH
T ss_pred CCcEEEEeCHHHHHHHHHHHHHhcCC-cEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhh
Confidence 45556555 78989999999988866 899999999999888888887422278899999982 1 12223
Q ss_pred c-cccEEEEcccc
Q 010836 307 L-NISRIIFSTMK 318 (499)
Q Consensus 307 i-pv~~VI~~~~~ 318 (499)
. .++.||.....
T Consensus 163 ~~~i~~iViDEAH 175 (591)
T 2v1x_A 163 ARRFTRIAVDEVH 175 (591)
T ss_dssp TTCEEEEEEETGG
T ss_pred ccCCcEEEEECcc
Confidence 4 47777765544
No 499
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=57.99 E-value=8.3 Score=45.91 Aligned_cols=32 Identities=22% Similarity=0.422 Sum_probs=26.4
Q ss_pred CCceEEEEccCCccHHHHHHHHH----HcCCCEEEE
Q 010836 76 VRKVILHVGPTNSGKTHQALSRL----ESSSSGIYC 107 (499)
Q Consensus 76 ~~~~vli~apTGsGKT~~~l~~l----~~~~~~l~l 107 (499)
.++++++.||+|+|||+.+.+.+ ..+.+++|+
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fi 1115 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFI 1115 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 58999999999999999986555 345678887
No 500
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=57.88 E-value=6.6 Score=32.22 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=16.0
Q ss_pred eEEEEccCCccHHHHHHHHH
Q 010836 79 VILHVGPTNSGKTHQALSRL 98 (499)
Q Consensus 79 ~vli~apTGsGKT~~~l~~l 98 (499)
.+++.|++|+|||...-..+
T Consensus 3 ki~v~G~~~~GKSsli~~l~ 22 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLL 22 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999997754443
Done!