BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010837
         (499 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224079119|ref|XP_002305756.1| predicted protein [Populus trichocarpa]
 gi|222848720|gb|EEE86267.1| predicted protein [Populus trichocarpa]
          Length = 530

 Score =  739 bits (1908), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 367/531 (69%), Positives = 420/531 (79%), Gaps = 41/531 (7%)

Query: 4   LSRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFY 63
           L+ IR  +FSST N  YT + P+  FPP  ++Y +   P   T+L SALQHYINSDTPF+
Sbjct: 6   LATIRPYIFSSTCN--YTSLRPSNVFPPNQEDYITHQTP---TTLSSALQHYINSDTPFH 60

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G KIH HI KTG +PN NISIKLLILHLKC  LKYA Q+FDELPQRTLSAYNYMI GYL+
Sbjct: 61  GQKIHTHILKTGFRPNINISIKLLILHLKCRCLKYAHQLFDELPQRTLSAYNYMIGGYLR 120

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G  EES+S+VR+L   GERPDG+TFSMILKAST   +NV LPRN G +VHAQILK DVK
Sbjct: 121 QGLFEESISMVRRLDLDGERPDGFTFSMILKASTSG-ANVMLPRNTGGLVHAQILKLDVK 179

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           ADDVLYTALVDSYVK GK  YAR VFD+MLEKNVICSTSMISG+M+QGFVEDAEEIF KT
Sbjct: 180 ADDVLYTALVDSYVKSGKVGYARKVFDLMLEKNVICSTSMISGYMNQGFVEDAEEIFWKT 239

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVH------------------------------- 272
           VEKDIVV+NAMIEGYS S+ETA KALEV+                               
Sbjct: 240 VEKDIVVFNAMIEGYSKSVETAMKALEVYVDMQRFGLRPNGSTFASVSGACSVLAGFEIG 299

Query: 273 ----CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
               CQL+K+ FF  VK+GSAL+DMY+KCG+I+DARRVF++M  +NVF+WTSMIDGYGKN
Sbjct: 300 QQVQCQLMKSGFFNGVKMGSALIDMYSKCGRIEDARRVFNYMPVRNVFSWTSMIDGYGKN 359

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G P +ALELF  MQ+C ++PNYVTFLGALSACGHAGLV KGREIF+SMERDYS KP+MEH
Sbjct: 360 GEPWEALELFHRMQQCNIEPNYVTFLGALSACGHAGLVTKGREIFDSMERDYSTKPRMEH 419

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
           YACMVDLLGRAG+L+QA + V  MPEKPNSDVWAALLSSC +H +VEMA +AAN++FK+N
Sbjct: 420 YACMVDLLGRAGNLQQAWELVKGMPEKPNSDVWAALLSSCNMHGNVEMARVAANKLFKIN 479

Query: 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           A  RPGAYVALSNTLAAA +WDSV+ELRE MKLRG+ KDT CSWVGTE  L
Sbjct: 480 AIGRPGAYVALSNTLAAAERWDSVSELREMMKLRGISKDTACSWVGTEVDL 530


>gi|225443851|ref|XP_002267303.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
           mitochondrial [Vitis vinifera]
          Length = 533

 Score =  719 bits (1855), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/531 (66%), Positives = 424/531 (79%), Gaps = 42/531 (7%)

Query: 5   SRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYG 64
           S IR S+FSS+ N+  + VPPNQ+FPP     D +S+P TA SL  ALQHYINSD P +G
Sbjct: 7   SSIRPSIFSSSQNQRPS-VPPNQSFPPA---SDYISSP-TAISLSVALQHYINSDFPSHG 61

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
            KIH+HI K G +PNTN+SIKLLILHLK   L+YA Q+FDE+ Q TLSAYNYMI+GYLK+
Sbjct: 62  QKIHSHILKIGFEPNTNVSIKLLILHLKSRCLRYARQLFDEMHQPTLSAYNYMISGYLKH 121

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV-PLPRNLGRMVHAQILKCDVK 183
           GQ+EE L+LV +L  S E+PDG+TFSMILKA+ C    + PL  +LG++VHAQIL+ +V+
Sbjct: 122 GQIEELLNLVSRLTFSYEKPDGFTFSMILKATGCASGGIFPLTYSLGKVVHAQILRSNVE 181

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +DDVLYTALVDSYVK GK  YAR VFDMML+KNV+CSTSMISG+MSQG VEDAE+IF++T
Sbjct: 182 SDDVLYTALVDSYVKNGKVGYARRVFDMMLDKNVLCSTSMISGYMSQGSVEDAEDIFKRT 241

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVH------------------------------- 272
           VEKD+VV+NAMIEGYS S+ETAR++LEV+                               
Sbjct: 242 VEKDVVVFNAMIEGYSKSVETARRSLEVYIDMQRLNFRPTMSTFASVIGACSVLTVFEIG 301

Query: 273 ----CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
                QL+K  F+ D+K+GSAL+DMY+KCG+I+DARRVFDHM +KNVF+WTSMIDGYGKN
Sbjct: 302 QQVQSQLVKMNFYNDIKMGSALIDMYSKCGRIEDARRVFDHMPEKNVFSWTSMIDGYGKN 361

Query: 329 GNPNQALELFCMMQ-ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           GN N+ALELF  MQ EC V+PNYVTFL ALSACGHAGLV KG  I ESMERDY +KP+ME
Sbjct: 362 GNSNEALELFSRMQIECHVKPNYVTFLSALSACGHAGLVAKGWTILESMERDYLLKPRME 421

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           HYACMVDLLGRAGSL+QA +FV+ MPEKP SDVWAALLSSC+LH DVEMA++AA+EIFKL
Sbjct: 422 HYACMVDLLGRAGSLQQAWEFVMRMPEKPGSDVWAALLSSCQLHGDVEMASMAAHEIFKL 481

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498
           N++ RPGAYVALSN LAAAGKWDSV+E+R+ MK+RGV KDTGCSWVGT+SG
Sbjct: 482 NSDGRPGAYVALSNALAAAGKWDSVSEVRQLMKVRGVSKDTGCSWVGTDSG 532


>gi|255563078|ref|XP_002522543.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538234|gb|EEF39843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 530

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/521 (65%), Positives = 407/521 (78%), Gaps = 46/521 (8%)

Query: 14  STHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITK 73
           ++H     ++PPN+ +  +           TA +L SALQ +INS+TPF+G KIHAHI K
Sbjct: 21  TSHAHSNPILPPNEEYLFRS----------TAAALSSALQDHINSNTPFHGQKIHAHIVK 70

Query: 74  TGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL 133
           TG  PNTN+SIKLLIL+LKCG LKYA QMFDELPQRTLSAYNY+I GYLK G V++S++L
Sbjct: 71  TGFIPNTNVSIKLLILYLKCGCLKYARQMFDELPQRTLSAYNYLIGGYLKLGLVQDSMNL 130

Query: 134 VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALV 193
           VR+LV  G+RPDG+T+SMILKAST    NV L  NLG +VH QILK +V+ DDVLYTALV
Sbjct: 131 VRRLVLEGQRPDGFTYSMILKASTS-GDNVTLSCNLGSVVHGQILKSEVEPDDVLYTALV 189

Query: 194 DSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNA 253
           DSYVK G+  YAR VFDMM+EKNVICSTSMISG+M++G VEDAEEIF +TVEKD+VV+NA
Sbjct: 190 DSYVKSGRVGYARKVFDMMMEKNVICSTSMISGYMNRGSVEDAEEIFERTVEKDVVVFNA 249

Query: 254 MIEGYSISIETARKALEVHC-----------------------------------QLIKN 278
           MIEGYS S++TA KALEV+                                    QL+K 
Sbjct: 250 MIEGYSKSVQTAEKALEVYVEMQRYGFRPNLSTFASVIGACSVLAGFEIGQQVQGQLLKR 309

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
            FF +VK GSAL+DMY+KCG+I+DARR F+ M +KNVF+W+SMIDGYGKNG P++AL+LF
Sbjct: 310 EFFTNVKTGSALIDMYSKCGRIEDARRAFEQMPEKNVFSWSSMIDGYGKNGRPDEALQLF 369

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398
             MQ+CC++PNYVTFLGALSACGHAGLV KGREIFESMER+YS+KP MEHYACMVDLLGR
Sbjct: 370 HKMQDCCIEPNYVTFLGALSACGHAGLVSKGREIFESMEREYSLKPGMEHYACMVDLLGR 429

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVA 458
           AGSL  A +FV+ MPEKP+SDVWAALLS+C LH +VEMA++AANE+FKLNA  R GAYVA
Sbjct: 430 AGSLNLAWEFVMGMPEKPSSDVWAALLSACNLHGNVEMASVAANELFKLNAEGRSGAYVA 489

Query: 459 LSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           LSNTLAAAGKWD VTE+RE MK RG+LKDTG SWVGTES L
Sbjct: 490 LSNTLAAAGKWDGVTEVREIMKSRGILKDTGSSWVGTESVL 530


>gi|449509043|ref|XP_004163477.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
           mitochondrial-like [Cucumis sativus]
          Length = 523

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/522 (63%), Positives = 404/522 (77%), Gaps = 44/522 (8%)

Query: 13  SSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHIT 72
           S TH    +L+    +F P      + ++  T+TSL SALQHYINSD P +GLKIHAHI 
Sbjct: 8   SVTHRVFSSLIDYVPSFAP------TQTSNQTSTSLSSALQHYINSDDPSHGLKIHAHIL 61

Query: 73  KTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLS 132
           KTG  PNTNISIKLLILHLKC +LK+A Q FD LPQ+TLSAYNYMI GY+K G+V ESL 
Sbjct: 62  KTGFIPNTNISIKLLILHLKCKSLKFARQAFDALPQKTLSAYNYMIGGYMKMGEVPESLP 121

Query: 133 LVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTAL 192
           LVR+L+ SGE+PDG+TFSM+LKAST  R +  +PR+LGR+VHAQILK +V  DDVLYTAL
Sbjct: 122 LVRELICSGEKPDGFTFSMLLKASTLAREDF-VPRSLGRVVHAQILKSNVSPDDVLYTAL 180

Query: 193 VDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN 252
           VDSY+K G    AR+VFD+ML+KNVICSTSMISG+M++G V+DAEEIFRKTVEKDIVV+N
Sbjct: 181 VDSYIKNGDVYIARLVFDLMLKKNVICSTSMISGYMNRGLVKDAEEIFRKTVEKDIVVFN 240

Query: 253 AMIEGYSISIETARKALE-----------------------------------VHCQLIK 277
           AMIEGYS + E A+K+LE                                   + CQL+K
Sbjct: 241 AMIEGYSKTHEHAKKSLEFYIDMQRLCFSPNISTFSSVIGACSVLAAFEAGQQIQCQLMK 300

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
             FF D+++GSAL+DMY+KCG+ DDAR+VFD MQ++NVF+WTSMIDGYGKNG P++ALEL
Sbjct: 301 TKFFTDIRMGSALIDMYSKCGRTDDARQVFDQMQERNVFSWTSMIDGYGKNGYPSEALEL 360

Query: 338 FCMMQE-CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           FC+MQE   +QPN+VTFL ALSAC H GLV++G EIFESMERDYS+KPKMEHYACMVDLL
Sbjct: 361 FCIMQEKHQIQPNFVTFLSALSACAHGGLVEEGWEIFESMERDYSLKPKMEHYACMVDLL 420

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456
           GRAGSL QA +FV++MPE PNSDVWAALLSS +LH +VE+A +AA+E+FKLNA+ RPGAY
Sbjct: 421 GRAGSLLQAWEFVMQMPETPNSDVWAALLSSAKLHGNVEIACMAADELFKLNADSRPGAY 480

Query: 457 VALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498
           VALSNT A AGKW++V+ELRE MK++ V K  G SWVG   G
Sbjct: 481 VALSNTFAEAGKWNNVSELREIMKIKRV-KCKGSSWVGAGDG 521


>gi|449462669|ref|XP_004149063.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
           mitochondrial-like [Cucumis sativus]
          Length = 523

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/522 (63%), Positives = 403/522 (77%), Gaps = 44/522 (8%)

Query: 13  SSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHIT 72
           S TH    +L+    +F P      + ++  T+TSL SALQHYINSD P +GLKIHAHI 
Sbjct: 8   SVTHRVFSSLIDYVPSFAP------TQTSNQTSTSLSSALQHYINSDDPSHGLKIHAHIL 61

Query: 73  KTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLS 132
           KTG  PNTNISIKLLILHLKC +LK+A Q FD LPQ+TLSAYNYMI GY+K G+V ESL 
Sbjct: 62  KTGFIPNTNISIKLLILHLKCKSLKFARQAFDALPQKTLSAYNYMIGGYMKMGEVPESLP 121

Query: 133 LVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTAL 192
           LVR+L+ SGE+PDG+TFSM+LKAST  R +  +PR+LGR+VHAQILK +V  DDVLYTAL
Sbjct: 122 LVRELICSGEKPDGFTFSMLLKASTLAREDF-VPRSLGRVVHAQILKSNVSPDDVLYTAL 180

Query: 193 VDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN 252
           VDSY+K G    AR+VFD+ML+KNVICSTSMISG+M++G V+DAEEIFRKTVEKDIVV+N
Sbjct: 181 VDSYIKNGDVYIARMVFDLMLKKNVICSTSMISGYMNRGLVKDAEEIFRKTVEKDIVVFN 240

Query: 253 AMIEGYSISIETARKALE-----------------------------------VHCQLIK 277
           AMIEGYS + E A+K+LE                                   + CQL+K
Sbjct: 241 AMIEGYSKTHEHAKKSLEFYIDMQRLCFSPNISTFSSVIGACSVLAAFEAGQQIQCQLMK 300

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
             FF D+++GSAL+DMY+KCG+ DDAR+VFD MQ++NVF+WTSMIDGYGKNG P++ALEL
Sbjct: 301 TKFFTDIRMGSALIDMYSKCGRTDDARQVFDQMQERNVFSWTSMIDGYGKNGYPSEALEL 360

Query: 338 FCMMQE-CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           FC+MQE   +QPN+VTFL ALSAC H GLV++G EIFESMERDYS+KPKMEHYACMVDLL
Sbjct: 361 FCIMQEKHQIQPNFVTFLSALSACAHGGLVEEGWEIFESMERDYSLKPKMEHYACMVDLL 420

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456
           GRAGSL QA +F ++MPE PNSDVWAALLSS +LH +VE+A +AA+E+FKLNA+ RPGAY
Sbjct: 421 GRAGSLLQAWEFAMQMPETPNSDVWAALLSSAKLHGNVEIACMAADELFKLNADSRPGAY 480

Query: 457 VALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498
           VALSNT A AGKW++V+ELRE MK++ V K  G SWVG   G
Sbjct: 481 VALSNTFAEAGKWNNVSELREIMKIKRV-KCKGSSWVGAGDG 521


>gi|297740478|emb|CBI30660.3| unnamed protein product [Vitis vinifera]
          Length = 598

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 320/492 (65%), Positives = 386/492 (78%), Gaps = 42/492 (8%)

Query: 5   SRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYG 64
           S IR S+FSS+ N+  + VPPNQ+FPP     D +S+P TA SL  ALQHYINSD P +G
Sbjct: 7   SSIRPSIFSSSQNQRPS-VPPNQSFPPA---SDYISSP-TAISLSVALQHYINSDFPSHG 61

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
            KIH+HI K G +PNTN+SIKLLILHLK   L+YA Q+FDE+ Q TLSAYNYMI+GYLK+
Sbjct: 62  QKIHSHILKIGFEPNTNVSIKLLILHLKSRCLRYARQLFDEMHQPTLSAYNYMISGYLKH 121

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV-PLPRNLGRMVHAQILKCDVK 183
           GQ+EE L+LV +L  S E+PDG+TFSMILKA+ C    + PL  +LG++VHAQIL+ +V+
Sbjct: 122 GQIEELLNLVSRLTFSYEKPDGFTFSMILKATGCASGGIFPLTYSLGKVVHAQILRSNVE 181

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +DDVLYTALVDSYVK GK  YAR VFDMML+KNV+CSTSMISG+MSQG VEDAE+IF++T
Sbjct: 182 SDDVLYTALVDSYVKNGKVGYARRVFDMMLDKNVLCSTSMISGYMSQGSVEDAEDIFKRT 241

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHC------------------------------ 273
           VEKD+VV+NAMIEGYS S+ETAR++LEV+                               
Sbjct: 242 VEKDVVVFNAMIEGYSKSVETARRSLEVYIDMQRLNFRPTMSTFASVIGACSVLTVFEIG 301

Query: 274 -----QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
                QL+K  F+ D+K+GSAL+DMY+KCG+I+DARRVFDHM +KNVF+WTSMIDGYGKN
Sbjct: 302 QQVQSQLVKMNFYNDIKMGSALIDMYSKCGRIEDARRVFDHMPEKNVFSWTSMIDGYGKN 361

Query: 329 GNPNQALELFCMMQ-ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           GN N+ALELF  MQ EC V+PNYVTFL ALSACGHAGLV KG  I ESMERDY +KP+ME
Sbjct: 362 GNSNEALELFSRMQIECHVKPNYVTFLSALSACGHAGLVAKGWTILESMERDYLLKPRME 421

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           HYACMVDLLGRAGSL+QA +FV+ MPEKP SDVWAALLSSC+LH DVEMA++AA+EIFKL
Sbjct: 422 HYACMVDLLGRAGSLQQAWEFVMRMPEKPGSDVWAALLSSCQLHGDVEMASMAAHEIFKL 481

Query: 448 NANDRPGAYVAL 459
           N++ RPGAY  +
Sbjct: 482 NSDGRPGAYALI 493


>gi|356546597|ref|XP_003541711.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
           mitochondrial-like [Glycine max]
          Length = 525

 Score =  636 bits (1640), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 325/522 (62%), Positives = 393/522 (75%), Gaps = 43/522 (8%)

Query: 12  FSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHI 71
           F S+     +L+  +Q FP   QN+D +     +TS  +ALQ YINS+TP +G KIH+ I
Sbjct: 9   FFSSRGFCTSLISHHQPFP---QNHDFIP---PSTSFSNALQLYINSETPSHGQKIHSSI 62

Query: 72  TKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESL 131
            K+G  PNTNISIKLLIL+LKC  L+YA Q+FD+L  RTLSAYNYMI+GYLK  QVEESL
Sbjct: 63  LKSGFVPNTNISIKLLILYLKCNCLRYARQVFDDLRDRTLSAYNYMISGYLKQDQVEESL 122

Query: 132 SLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTA 191
            LV +L+ SGE+PDG+TFSMILKAST    NV L  +LGRMVH QILK D++ D+VL TA
Sbjct: 123 GLVHRLLVSGEKPDGFTFSMILKASTS-GCNVALLGDLGRMVHTQILKSDIERDEVLCTA 181

Query: 192 LVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVY 251
           L+DSYVK G+ +YAR VFD+M EKNV+CSTS+ISG+M+QG +EDAE IF KT++KD+V +
Sbjct: 182 LIDSYVKNGRVAYARTVFDVMSEKNVVCSTSLISGYMNQGSIEDAECIFLKTMDKDVVAF 241

Query: 252 NAMIEGYSISIETARKALEVHC-----------------------------------QLI 276
           NAMIEGYS + E A ++LEV+                                    QL+
Sbjct: 242 NAMIEGYSKTSEYAMRSLEVYIDMQRLNFRPNVSTFASVIGACSMLAAFEIGQQVQSQLM 301

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           K  F+ D+KLGSAL+DMYAKCG++ DARRVFD M +KNVF+WTSMIDGYGKNG P++AL+
Sbjct: 302 KTPFYADIKLGSALIDMYAKCGRVVDARRVFDCMLKKNVFSWTSMIDGYGKNGFPDEALQ 361

Query: 337 LFCMMQ-ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDL 395
           LF  +Q E  + PNYVTFL ALSAC HAGLVDKG EIF+SME +Y +KP MEHYACMVDL
Sbjct: 362 LFGKIQTEYGIVPNYVTFLSALSACAHAGLVDKGWEIFQSMENEYLVKPGMEHYACMVDL 421

Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA 455
           LGRAG L QA +FV+ MPE+PN DVWAALLSSCRLH ++EMA +AANE+FKLNA  RPGA
Sbjct: 422 LGRAGMLNQAWEFVMRMPERPNLDVWAALLSSCRLHGNLEMAKLAANELFKLNATGRPGA 481

Query: 456 YVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTES 497
           YVALSNTLAAAGKW+SVTELRE MK RG+ KDTG SWVG +S
Sbjct: 482 YVALSNTLAAAGKWESVTELREIMKERGISKDTGRSWVGADS 523


>gi|357446911|ref|XP_003593731.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482779|gb|AES63982.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 520

 Score =  630 bits (1624), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 315/509 (61%), Positives = 383/509 (75%), Gaps = 43/509 (8%)

Query: 21  TLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNT 80
           +L+ P+Q F    QN+D +     +T   + LQHYINS TP +G KIH+HI KTG  PNT
Sbjct: 19  SLLSPHQPFS---QNHDFIP---PSTFFSNTLQHYINSQTPSHGQKIHSHILKTGFVPNT 72

Query: 81  NISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSS 140
           NISIKLLIL++K  +L+YA Q+FD+L  RTLSAYNYMI GYLKNGQV+ESL L  +L  S
Sbjct: 73  NISIKLLILYIKSHSLRYARQVFDDLHDRTLSAYNYMIGGYLKNGQVDESLDLFHQLSVS 132

Query: 141 GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGG 200
           GE+PDG+TFSMILKAST   SN  +  +LGRMVHAQILK DV+ DDVL TAL+DSYVK G
Sbjct: 133 GEKPDGFTFSMILKASTNRVSN-GMVGDLGRMVHAQILKFDVEKDDVLCTALIDSYVKNG 191

Query: 201 KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI 260
           +  Y R VFD+M EKNVI STS+ISG+M++GF +DAE IFRKT++KD+VV+NAMIEGYS 
Sbjct: 192 RVGYGRTVFDVMSEKNVISSTSLISGYMNKGFFDDAEYIFRKTLDKDVVVFNAMIEGYSK 251

Query: 261 SIETARKALEVH-----------------------------------CQLIKNVFFEDVK 285
             E A ++LEV+                                    QL+K  FF  +K
Sbjct: 252 VSEYAMRSLEVYIDMQRLNFRPNLSTFASIIGACSVLAAFEIGEQVQAQLMKTPFFAVIK 311

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ-EC 344
           LGSAL+DMY+KCG++ DA+RVFDHM +KNVF+WTSMIDGYGKNG P++ALELF  MQ E 
Sbjct: 312 LGSALIDMYSKCGRVIDAQRVFDHMLEKNVFSWTSMIDGYGKNGFPDEALELFKKMQIEY 371

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQ 404
            + PN+VTFL AL+AC HAGLV++G EIF+SME +Y +KP+MEHYACMVDLLGRAG L Q
Sbjct: 372 SITPNFVTFLSALTACAHAGLVERGWEIFQSMESEYKLKPRMEHYACMVDLLGRAGWLNQ 431

Query: 405 ALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464
           A +FV  MPE+PNSDVW ALLSSCR+H ++EMA +AANE+FKLNA  RPGAYVALSNTLA
Sbjct: 432 AWEFVTRMPERPNSDVWLALLSSCRIHGNIEMAKLAANELFKLNAYGRPGAYVALSNTLA 491

Query: 465 AAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            AGKWD+V+ELRE MK +G+ KDT CSWV
Sbjct: 492 DAGKWDNVSELREVMKEKGISKDTACSWV 520


>gi|6691205|gb|AAF24543.1|AC007508_6 F1K23.11 [Arabidopsis thaliana]
          Length = 841

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 313/532 (58%), Positives = 390/532 (73%), Gaps = 45/532 (8%)

Query: 2   PNLSRIRSSVFSSTHNRHYTLVPPNQ--TFPPKLQNYDSLSNPLTATSLPSALQHYINSD 59
           PN+S +R   F+S   R   ++P N   TFP K QN  SLS    A  +  ALQ +INS 
Sbjct: 318 PNVS-MRIFRFTSISPR---ILPSNHYSTFPLK-QNVSSLS---PAKYIAGALQEHINSP 369

Query: 60  TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIA 119
            P  G KIHA I KTG +P+ NISIKLLILHLKCG L YA Q+FDELP+ TLSAYNYMI+
Sbjct: 370 APKAGKKIHADIIKTGFQPDLNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMIS 429

Query: 120 GYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           GYLK+G V+E L LV+++  SGE+ DGYT SM+LKAS    S + LPR+L R+VHA+I+K
Sbjct: 430 GYLKHGLVKELLLLVQRMSYSGEKADGYTLSMVLKASNSRGSTMILPRSLCRLVHARIIK 489

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
           CDV+ DDVL TALVD+YVK GK   AR VF+ M ++NV+C TSMISG+M+QGFVEDAEEI
Sbjct: 490 CDVELDDVLITALVDTYVKSGKLESARTVFETMKDENVVCCTSMISGYMNQGFVEDAEEI 549

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKAL------------------------------ 269
           F  T  KDIVVYNAM+EG+S S ETA++++                              
Sbjct: 550 FNTTKVKDIVVYNAMVEGFSRSGETAKRSVDMYISMQRAGFHPNISTFASVIGACSVLTS 609

Query: 270 -----EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
                +VH Q++K+  +  +K+GS+L+DMYAKCG I+DARRVFD MQ+KNVF+WTSMIDG
Sbjct: 610 HEVGQQVHAQIMKSGVYTHIKMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWTSMIDG 669

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP 384
           YGKNGNP +ALELF  M+E  ++PNYVTFLGALSAC H+GLVDKG EIFESM+RDYSMKP
Sbjct: 670 YGKNGNPEEALELFTRMKEFRIEPNYVTFLGALSACSHSGLVDKGYEIFESMQRDYSMKP 729

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
           KMEHYAC+VDL+GRAG L +A +F   MPE+P+SD+WAALLSSC LH +VE+A+IAA+E+
Sbjct: 730 KMEHYACIVDLMGRAGDLNKAFEFARAMPERPDSDIWAALLSSCNLHGNVELASIAASEL 789

Query: 445 FKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
           FKLNA+ RPGAY+ALSN  A+  KWD+V+++RE MK R + K  G SW   +
Sbjct: 790 FKLNADKRPGAYLALSNVYASNDKWDNVSKIREVMKRRRISKTIGRSWTSED 841


>gi|42562381|ref|NP_174190.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806502|sp|Q1PFQ9.2|PPR62_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g28690, mitochondrial; Flags: Precursor
 gi|332192893|gb|AEE31014.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 520

 Score =  614 bits (1584), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 306/512 (59%), Positives = 380/512 (74%), Gaps = 41/512 (8%)

Query: 22  LVPPNQ--TFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPN 79
           ++P N   TFP K QN  SLS    A  +  ALQ +INS  P  G KIHA I KTG +P+
Sbjct: 13  ILPSNHYSTFPLK-QNVSSLS---PAKYIAGALQEHINSPAPKAGKKIHADIIKTGFQPD 68

Query: 80  TNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVS 139
            NISIKLLILHLKCG L YA Q+FDELP+ TLSAYNYMI+GYLK+G V+E L LV+++  
Sbjct: 69  LNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGYLKHGLVKELLLLVQRMSY 128

Query: 140 SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKG 199
           SGE+ DGYT SM+LKAS    S + LPR+L R+VHA+I+KCDV+ DDVL TALVD+YVK 
Sbjct: 129 SGEKADGYTLSMVLKASNSRGSTMILPRSLCRLVHARIIKCDVELDDVLITALVDTYVKS 188

Query: 200 GKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS 259
           GK   AR VF+ M ++NV+C TSMISG+M+QGFVEDAEEIF  T  KDIVVYNAM+EG+S
Sbjct: 189 GKLESARTVFETMKDENVVCCTSMISGYMNQGFVEDAEEIFNTTKVKDIVVYNAMVEGFS 248

Query: 260 ISIETARKAL-----------------------------------EVHCQLIKNVFFEDV 284
            S ETA++++                                   +VH Q++K+  +  +
Sbjct: 249 RSGETAKRSVDMYISMQRAGFHPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHI 308

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
           K+GS+L+DMYAKCG I+DARRVFD MQ+KNVF+WTSMIDGYGKNGNP +ALELF  M+E 
Sbjct: 309 KMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEF 368

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQ 404
            ++PNYVTFLGALSAC H+GLVDKG EIFESM+RDYSMKPKMEHYAC+VDL+GRAG L +
Sbjct: 369 RIEPNYVTFLGALSACSHSGLVDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNK 428

Query: 405 ALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464
           A +F   MPE+P+SD+WAALLSSC LH +VE+A+IAA+E+FKLNA+ RPGAY+ALSN  A
Sbjct: 429 AFEFARAMPERPDSDIWAALLSSCNLHGNVELASIAASELFKLNADKRPGAYLALSNVYA 488

Query: 465 AAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
           +  KWD+V+++RE MK R + K  G SW   +
Sbjct: 489 SNDKWDNVSKIREVMKRRRISKTIGRSWTSED 520


>gi|116830928|gb|ABK28420.1| unknown [Arabidopsis thaliana]
          Length = 521

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 306/512 (59%), Positives = 380/512 (74%), Gaps = 41/512 (8%)

Query: 22  LVPPNQ--TFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPN 79
           ++P N   TFP K QN  SLS    A  +  ALQ +INS  P  G KIHA I KTG +P+
Sbjct: 13  ILPSNHYSTFPLK-QNVSSLS---PAKYIAGALQEHINSPAPKAGKKIHADIIKTGFQPD 68

Query: 80  TNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVS 139
            NISIKLLILHLKCG L YA Q+FDELP+ TLSAYNYMI+GYLK+G V+E L LV+++  
Sbjct: 69  LNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGYLKHGLVKELLLLVQRMSY 128

Query: 140 SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKG 199
           SGE+ DGYT SM+LKAS    S + LPR+L R+VHA+I+KCDV+ DDVL TALVD+YVK 
Sbjct: 129 SGEKADGYTLSMVLKASNSRGSTMILPRSLCRLVHARIIKCDVELDDVLITALVDTYVKS 188

Query: 200 GKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS 259
           GK   AR VF+ M ++NV+C TSMISG+M+QGFVEDAEEIF  T  KDIVVYNAM+EG+S
Sbjct: 189 GKLESARTVFETMKDENVVCCTSMISGYMNQGFVEDAEEIFNTTKVKDIVVYNAMVEGFS 248

Query: 260 ISIETARKAL-----------------------------------EVHCQLIKNVFFEDV 284
            S ETA++++                                   +VH Q++K+  +  +
Sbjct: 249 RSGETAKRSVDMYISMQRAGFHPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHI 308

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
           K+GS+L+DMYAKCG I+DARRVFD MQ+KNVF+WTSMIDGYGKNGNP +ALELF  M+E 
Sbjct: 309 KMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEF 368

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQ 404
            ++PNYVTFLGALSAC H+GLVDKG EIFESM+RDYSMKPKMEHYAC+VDL+GRAG L +
Sbjct: 369 RIEPNYVTFLGALSACSHSGLVDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNK 428

Query: 405 ALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464
           A +F   MPE+P+SD+WAALLSSC LH +VE+A+IAA+E+FKLNA+ RPGAY+ALSN  A
Sbjct: 429 AFEFARAMPERPDSDIWAALLSSCNLHGNVELASIAASELFKLNADKRPGAYLALSNVYA 488

Query: 465 AAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
           +  KWD+V+++RE MK R + K  G SW   +
Sbjct: 489 SNDKWDNVSKIREVMKRRRISKTIGRSWTSED 520


>gi|91805879|gb|ABE65668.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 520

 Score =  614 bits (1583), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 306/512 (59%), Positives = 380/512 (74%), Gaps = 41/512 (8%)

Query: 22  LVPPNQ--TFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPN 79
           ++P N   TFP K QN  SLS    A  +  ALQ +INS  P  G KIHA I KTG +P+
Sbjct: 13  ILPSNHYSTFPLK-QNVSSLS---PAKYIAGALQEHINSPAPKAGKKIHADIIKTGFQPD 68

Query: 80  TNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVS 139
            NISIKLLILHLKCG L YA Q+FDELP+ TLSAYNYMI+GYLK+G V+E L LV+++  
Sbjct: 69  LNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGYLKHGLVKELLLLVQRMSY 128

Query: 140 SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKG 199
           SGE+ DGYT SM+LKAS    S + LPR+L R+VHA+I+KCDV+ DDVL TALVD+YVK 
Sbjct: 129 SGEKADGYTLSMVLKASNSRGSTMILPRSLCRLVHARIIKCDVELDDVLITALVDTYVKS 188

Query: 200 GKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS 259
           GK   AR VF+ M ++NV+C TSMISG+M+QGFVEDAEEIF  T  KDIVVYNAM+EG+S
Sbjct: 189 GKLESARTVFETMKDENVVCCTSMISGYMNQGFVEDAEEIFNTTKVKDIVVYNAMVEGFS 248

Query: 260 ISIETARKAL-----------------------------------EVHCQLIKNVFFEDV 284
            S ETA++++                                   +VH Q++K+  +  +
Sbjct: 249 RSGETAKRSVDMYISMQRAGFHPNISTFASVIGACAVLTSHEVGQQVHAQIMKSGVYTHI 308

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
           K+GS+L+DMYAKCG I+DARRVFD MQ+KNVF+WTSMIDGYGKNGNP +ALELF  M+E 
Sbjct: 309 KMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEF 368

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQ 404
            ++PNYVTFLGALSAC H+GLVDKG EIFESM+RDYSMKPKMEHYAC+VDL+GRAG L +
Sbjct: 369 RIEPNYVTFLGALSACSHSGLVDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNK 428

Query: 405 ALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464
           A +F   MPE+P+SD+WAALLSSC LH +VE+A+IAA+E+FKLNA+ RPGAY+ALSN  A
Sbjct: 429 AFEFARAMPERPDSDIWAALLSSCNLHGNVELASIAASELFKLNADKRPGAYLALSNVYA 488

Query: 465 AAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
           +  KWD+V+++RE MK R + K  G SW   +
Sbjct: 489 SNDKWDNVSKIREVMKRRRISKTIGRSWTSED 520


>gi|297851320|ref|XP_002893541.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339383|gb|EFH69800.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 520

 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 307/512 (59%), Positives = 379/512 (74%), Gaps = 41/512 (8%)

Query: 22  LVPPNQ--TFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPN 79
           + P N   TFP K QN  SLS    A  +  ALQ +INS  P  G KIHA I KTG  P+
Sbjct: 13  IFPLNHYSTFPLK-QNVSSLS---PAKYIAGALQEHINSSAPKAGQKIHADIIKTGFIPD 68

Query: 80  TNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVS 139
            NISIKLLILHLKCG L YA Q+FDELP+ TLSAYNYMI+GYLK+G ++E L LV+ +  
Sbjct: 69  LNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGYLKHGFLKELLLLVQWISY 128

Query: 140 SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKG 199
           SGE+ DGYT SM+LKAS    SN+ +PR+L R+VHA+I+KCDV+ DDVL TALVD+YVK 
Sbjct: 129 SGEKADGYTLSMVLKASNSLGSNMLMPRSLCRLVHARIIKCDVELDDVLITALVDAYVKS 188

Query: 200 GKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS 259
           GK   AR VF+ M ++NV+C TSMISG+M+QGFVEDAEEIF  T  KDIVVYNAM+EG+S
Sbjct: 189 GKLESARTVFETMKDENVVCCTSMISGYMNQGFVEDAEEIFNTTKVKDIVVYNAMVEGFS 248

Query: 260 ISIETARKAL-----------------------------------EVHCQLIKNVFFEDV 284
            S ETA++++                                   +VH Q++K+  +  +
Sbjct: 249 RSAETAKRSVDMYISMQRASFHPNISTFASVIGACSVLTCHEVGQQVHAQIMKSGVYTHI 308

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
           K+GS+L+DMYAKCG IDDARRVFD MQ+KNVF+WTSMIDGYGKNGNP +ALELF  M+E 
Sbjct: 309 KMGSSLLDMYAKCGGIDDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEF 368

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQ 404
            ++PNYVTFLG LSAC H+GLVDKG EIFESM+RDYSMKPKMEHYACMVDL+GRAG L +
Sbjct: 369 HIEPNYVTFLGVLSACSHSGLVDKGYEIFESMQRDYSMKPKMEHYACMVDLMGRAGELNK 428

Query: 405 ALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464
           A +FV  MPE+ NSDVWAALLSSC LH +V++A+IAA+E+FKLNA+ RPGAY+ALSN  A
Sbjct: 429 AFEFVRAMPERHNSDVWAALLSSCNLHGNVDLASIAASELFKLNADKRPGAYLALSNVYA 488

Query: 465 AAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
           +  KWD+V+++RE MK+R + K+ G SW   +
Sbjct: 489 SNDKWDNVSKIREVMKVRRISKNIGRSWTSED 520


>gi|147801111|emb|CAN75464.1| hypothetical protein VITISV_006518 [Vitis vinifera]
          Length = 504

 Score =  500 bits (1287), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 269/511 (52%), Positives = 336/511 (65%), Gaps = 99/511 (19%)

Query: 7   IRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLK 66
           IR S+FSS+ N+    VPPNQ+FPP     D +S+P TA SL  ALQHYINSD P +G K
Sbjct: 9   IRPSIFSSSXNQR-PXVPPNQSFPPA---SDXISSP-TAISLSVALQHYINSDFPSHGQK 63

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           IH+HI K G +PNTN+SIKLLILHLK   L+YA Q+FDE+ Q TLSAYNYMI+GYLK+GQ
Sbjct: 64  IHSHILKIGFEPNTNVSIKLLILHLKSRCLRYARQLFDEMHQPTLSAYNYMISGYLKHGQ 123

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV-PLPRNLGRMVHAQILKCDVKAD 185
           +EE L+LV +L  S E+PDG+TFSMILKA+ C    + PL  +LG++VHAQIL+ +V+ D
Sbjct: 124 IEELLNLVSRLTFSYEKPDGFTFSMILKATGCASGGIFPLTYSLGKVVHAQILRSNVEXD 183

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
           DVLYTALVDSYVK GK  YAR VFDMML+KNV+CSTSMISG+MSQG VEDAE+IF++TVE
Sbjct: 184 DVLYTALVDSYVKNGKVGYARRVFDMMLDKNVLCSTSMISGYMSQGSVEDAEDIFKRTVE 243

Query: 246 KDIVVYNAMIEGYSISIETARKALEVH--------------------------------- 272
           KD+VV+NAMIEGYS S+ETAR++LEV+                                 
Sbjct: 244 KDVVVFNAMIEGYSKSVETARRSLEVYIDMQRLNFRPTMSTFASVIGACSVLTVXEIGQQ 303

Query: 273 --CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
              QL+K  F+ D+K+GSAL+DMY+KCG+I+DARRVFDHM +KNVF+WTSMIDGYGKNGN
Sbjct: 304 VQSQLVKMBFYNDIKMGSALIDMYSKCGRIEDARRVFDHMPEKNVFSWTSMIDGYGKNGN 363

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
            N+ALELF  MQ  C    +V  +                            KP  + +A
Sbjct: 364 SNEALELFSRMQIZCHAWEFVMXMPE--------------------------KPGSDVWA 397

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
            ++      G +E A                                ++AA+EIFKLN++
Sbjct: 398 ALLSSCQLHGDVEMA--------------------------------SMAAHEIFKLNSD 425

Query: 451 DRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
            RPGAYVALSN LAAAGKWDSV+E+R+ MK+
Sbjct: 426 GRPGAYVALSNALAAAGKWDSVSEVRQLMKV 456


>gi|242069791|ref|XP_002450172.1| hypothetical protein SORBIDRAFT_05g001460 [Sorghum bicolor]
 gi|241936015|gb|EES09160.1| hypothetical protein SORBIDRAFT_05g001460 [Sorghum bicolor]
          Length = 521

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/483 (47%), Positives = 325/483 (67%), Gaps = 41/483 (8%)

Query: 52  LQHYINSDTPFYGLK-IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRT 110
           +Q  I++  P    + +HA +  +G+  + ++S+KLL+LHL+CG+L  A  +FD +   T
Sbjct: 38  VQGLIDASPPRAEAQTLHAQLLASGLTGSADLSVKLLVLHLRCGSLHNARAVFDGMRTPT 97

Query: 111 LSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLG 170
            +A+NY++AGY + G+  E+L +VR+L +S  R D +  SM LK S      + LP  + 
Sbjct: 98  RAAHNYLVAGYFRRGRPAEALGVVRRLAASTGRLDVFALSMALKLSA----ALALPGVVA 153

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           R VHA++L+   ++D++L+ ALVD+YVK G  +YAR V   M  ++V+CST+++ G M++
Sbjct: 154 REVHARVLRSVAQSDEILFAALVDAYVKSGSLAYARRVHGAMPVRSVVCSTALVVGCMNE 213

Query: 231 GFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV------------------- 271
           G  EDAE IF +   KD+V YNAM+EGYS + +TA  +LEV                   
Sbjct: 214 GLFEDAEAIFEEMEGKDVVAYNAMVEGYSKTEDTAEGSLEVFKAMQQAGFRPTVSTFVSV 273

Query: 272 ----------------HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
                           HCQ +K+    D+K+GSALVDMYAKCG+++D RR+F+ M ++NV
Sbjct: 274 LGACSLLSSPELGEQVHCQGMKSGLVLDIKVGSALVDMYAKCGRVEDGRRIFNQMPERNV 333

Query: 316 FTWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNYVTFLGALSACGHAGLVDKGREIFE 374
            TWTSMIDGYGKNG   +AL+LF  M+E   V+PN+ TFL  LSAC HAGL+ +G+E F+
Sbjct: 334 ITWTSMIDGYGKNGLSEEALQLFAEMRERRDVRPNHATFLSILSACAHAGLLSQGQEAFQ 393

Query: 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDV 434
           SME +Y ++P+MEHYACMVDLLGR GS+ QA  FV  +P +PNSDVW ALL +  LH D+
Sbjct: 394 SMESEYLLQPRMEHYACMVDLLGRFGSVRQAYDFVRGIPVRPNSDVWTALLGAATLHGDM 453

Query: 435 EMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVG 494
           +MANIA+ E+F+L+   RPGAY+A SNTLAAAGKW+ V ++RE MK RGVLKDT CSWVG
Sbjct: 454 DMANIASREVFELSRKGRPGAYMAFSNTLAAAGKWEGVHDVREMMKQRGVLKDTACSWVG 513

Query: 495 TES 497
           +E+
Sbjct: 514 SEN 516


>gi|357112135|ref|XP_003557865.1| PREDICTED: pentatricopeptide repeat-containing protein At1g28690,
           mitochondrial-like [Brachypodium distachyon]
          Length = 521

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 241/496 (48%), Positives = 324/496 (65%), Gaps = 47/496 (9%)

Query: 44  TATSLPSALQHYINSD-TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           TA +L +A+Q  I +  T      +HA +  +G++P  ++ +K+LILHL+CG+ + A  +
Sbjct: 26  TAGALAAAVQSLIYARPTRPESACLHAQLLASGLRPTPDLLVKILILHLRCGSHRNARAV 85

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           FD +P  T +A+NY++AGY + G  EE+L +VR++  S  R D +  SM LK S      
Sbjct: 86  FDGMPTPTHAAHNYLVAGYFRLGLPEEALGVVRRIAGSTGRLDVFALSMALKLSA--ALA 143

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE--KNVICS 220
           +P      + VHA++++  V+ DD+L+ ALVD+YVK     YAR V DMM    + V+CS
Sbjct: 144 LP---GAAKEVHARVVRSVVEFDDILFAALVDAYVKNASLGYARRVHDMMPAPARRVVCS 200

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV--------- 271
           TS+I G M++G   +AE IF    EKD VVYNA+IEGYS + ETA  +LEV         
Sbjct: 201 TSLIVGCMNEGLYREAETIFEGMEEKDAVVYNALIEGYSKTEETAESSLEVLKAMQRAGF 260

Query: 272 --------------------------HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARR 305
                                      C +IK+    D+K GSAL+DMY+KCG+++DAR+
Sbjct: 261 RPTVSTCVSVLGACSLLSSPELGEQVQCHVIKSNIVSDIKAGSALLDMYSKCGRVEDARK 320

Query: 306 VFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM----QECCVQPNYVTFLGALSACG 361
           VFD M  +NV TWTSMIDGYGKNG   +ALELF  M    Q+  V+PN+ TFL ALSAC 
Sbjct: 321 VFDGMADRNVITWTSMIDGYGKNGLSEEALELFGEMRRRQQQRGVKPNHATFLSALSACA 380

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
            AGL+ +G+EI ESMER+YS+KP+MEHYACMVDLLGR GS+ +A  FV  +P +PNSDVW
Sbjct: 381 RAGLMSQGQEILESMEREYSLKPRMEHYACMVDLLGRFGSVRRAYDFVRGIPARPNSDVW 440

Query: 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
           AALL +  LH DV+MAN+A+ E+F L+   RPGAY+A SNTLAAAGKWD V ++RE M+ 
Sbjct: 441 AALLGAATLHGDVDMANVASKEVFALSHAGRPGAYMAFSNTLAAAGKWDGVHQVREMMRS 500

Query: 482 RGVLKDTGCSWVGTES 497
           RGVLKD  CSWVG+E+
Sbjct: 501 RGVLKDAACSWVGSEN 516


>gi|413924724|gb|AFW64656.1| pentatricopeptide repeat protein PPR868-14 isoform 1 [Zea mays]
 gi|413924725|gb|AFW64657.1| pentatricopeptide repeat protein PPR868-14 isoform 2 [Zea mays]
 gi|413924726|gb|AFW64658.1| pentatricopeptide repeat protein PPR868-14 isoform 3 [Zea mays]
          Length = 522

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 242/521 (46%), Positives = 338/521 (64%), Gaps = 55/521 (10%)

Query: 15  THNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYG--LKIHAHIT 72
           TH+R  +L P     P  L+         TA +L +A+Q  I++ +P  G    IHA + 
Sbjct: 14  THSRAGSLAP---RVPRHLR---------TAAALAAAVQGLIDA-SPARGESQTIHAQLL 60

Query: 73  KTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLS 132
            +G+  + ++S+KLL+LH++CG+L  A  +FD +P R+ +A+NY+IAGY + G+  E+L 
Sbjct: 61  ASGLVGSADLSVKLLVLHIRCGSLHNARAVFDGMPSRSRAAHNYLIAGYFRRGRPAEALG 120

Query: 133 LVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTAL 192
           ++R+L +S  R D +  SM LK S      + LP  + R  HA+ L+   ++DD+L+ AL
Sbjct: 121 ILRRLAASTGRLDVFALSMALKLSA----ALALPGVVAREAHARALRSVEQSDDILFAAL 176

Query: 193 VDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN 252
           VD+YVK G   YAR V   M  ++V+CST+++ G M +G  EDAE IF +   KD+V YN
Sbjct: 177 VDAYVKSGLLGYARRVHGAMPVRSVVCSTALLVGCMQEGLFEDAEAIFNEMEGKDVVAYN 236

Query: 253 AMIEGYSISIETARKALEV-----------------------------------HCQLIK 277
           AM+EGYS + ETA  +LEV                                   HCQ  K
Sbjct: 237 AMVEGYSKTEETAEGSLEVLKAMQRAGLRPTVSTFVSVLGACSLLSSPELGEQVHCQGTK 296

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
           +    D+K+GSALVDMYAKCG+++D RR+F+ M ++NV TWTSMIDGYGKNG  ++AL+L
Sbjct: 297 SGLVLDIKVGSALVDMYAKCGRVEDGRRIFNQMAERNVITWTSMIDGYGKNGLSDEALQL 356

Query: 338 FCMMQECC-VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           F  M+E   V+PN+ TFL  LSAC HAGL+ +G+E F+SME +Y ++P+MEHYACMVDLL
Sbjct: 357 FGEMRERRDVRPNHATFLSILSACAHAGLLSQGQEAFQSMESEYLLQPRMEHYACMVDLL 416

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456
           GR G + QA  FV  MP +PNSDVWAALL +  LH D+++  +A+ E+F+L+   RPGAY
Sbjct: 417 GRFGGVRQAYDFVRGMPVRPNSDVWAALLGAATLHGDMDICKVASREVFELSRKGRPGAY 476

Query: 457 VALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTES 497
           +A SNTLAAAG+WD V ++RE MK RGVLKDT CSWVG+E+
Sbjct: 477 MAFSNTLAAAGEWDGVHDVREMMKQRGVLKDTACSWVGSEN 517


>gi|115453187|ref|NP_001050194.1| Os03g0369700 [Oryza sativa Japonica Group]
 gi|12039352|gb|AAG46139.1|AC082644_21 hypothetical protein [Oryza sativa Japonica Group]
 gi|108708369|gb|ABF96164.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548665|dbj|BAF12108.1| Os03g0369700 [Oryza sativa Japonica Group]
 gi|125544037|gb|EAY90176.1| hypothetical protein OsI_11741 [Oryza sativa Indica Group]
 gi|125586399|gb|EAZ27063.1| hypothetical protein OsJ_10992 [Oryza sativa Japonica Group]
          Length = 513

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/497 (47%), Positives = 331/497 (66%), Gaps = 49/497 (9%)

Query: 44  TATSLPSALQHYINSDTPF---YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           TA +L + +Q  ++   P        +HA + ++G++P  ++S+KLL+LHL+CG+   A 
Sbjct: 22  TAAALAAVVQSLLDEPRPRPRPGSQTLHAQLLESGLRPTDDLSVKLLLLHLRCGSHHNAR 81

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
            +FD +P  T +A+NY+ AGY + G  EE+L +VR+L     R + +  SM LK S    
Sbjct: 82  AVFDGMPAPTHAAHNYLAAGYSRLGLPEEALGIVRRLARCTGRLNVFVLSMALKLSA--- 138

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
             + LPR + R VHA++++  V++DDVL+ ALVD+YVK     YAR VFD+M  + V+ S
Sbjct: 139 -ALALPRAV-REVHARVVRSVVESDDVLFAALVDAYVKNASLRYARRVFDVMPVRTVVSS 196

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV--------- 271
           T++I G M++G  EDAEEIF    EKD+VVYNAM+EGYS + ETA  ++EV         
Sbjct: 197 TALIVGCMNEGLYEDAEEIFNTMDEKDVVVYNAMVEGYSKTEETAESSMEVFKSMHRARF 256

Query: 272 --------------------------HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARR 305
                                     HCQ+IK+    D+K GSAL+DMY+KCG++DD RR
Sbjct: 257 RPTVSTFVSVLGACSLLSSPEIGEQVHCQVIKSSLSSDIKAGSALLDMYSKCGRVDDGRR 316

Query: 306 VFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM---QECCVQPNYVTFLGALSACGH 362
           +FD M ++NV TWTSMIDGYGKNG  ++AL+LF  M    +  ++PN+ TFL ALSAC  
Sbjct: 317 IFDRMAERNVITWTSMIDGYGKNGLSDEALQLFEQMLRRHDDAIRPNHATFLSALSACAR 376

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
           AGL+ +G+E+F+SMER+++++P+MEHYACMVDLLGR GS+ +A  F+  MP +P+SDVWA
Sbjct: 377 AGLLSRGQEVFQSMEREHALRPRMEHYACMVDLLGRFGSVRRAHDFIRGMPARPSSDVWA 436

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLN---ANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           ALL +  LH DVE A +AA E+F+L+      RPGAY+A+SNTLAAAGKWD V ++RE M
Sbjct: 437 ALLGAATLHGDVETAGLAAREVFELSRAAGRQRPGAYMAMSNTLAAAGKWDGVRQVREMM 496

Query: 480 KLRGVLKDTGCSWVGTE 496
           + RGVLKD  CSWVG+E
Sbjct: 497 RRRGVLKDAACSWVGSE 513


>gi|195614946|gb|ACG29303.1| pentatricopeptide repeat protein PPR868-14 [Zea mays]
          Length = 504

 Score =  433 bits (1113), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/506 (45%), Positives = 324/506 (64%), Gaps = 55/506 (10%)

Query: 15  THNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYG--LKIHAHIT 72
           TH+R  +L P     P  L+         TA +L +A+Q  I++ +P  G    IHA + 
Sbjct: 14  THSRAGSLAP---RVPRHLR---------TAAALAAAVQGLIDA-SPARGESQTIHAQLL 60

Query: 73  KTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLS 132
            +G+  + ++S+KLL+LH++CG+L  A  +FD +P R+ +A+NY++AGY + G+  E+L 
Sbjct: 61  ASGLVGSADLSVKLLVLHIRCGSLHNARALFDGMPSRSRAAHNYLVAGYFRRGRPAEALG 120

Query: 133 LVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTAL 192
           +VR+L +S  R D +  SM LK S      + LP  + R  HA+ L+   ++DD+L+ AL
Sbjct: 121 IVRRLAASTGRLDVFALSMALKLSA----ALALPGVVAREAHARALRSVEQSDDILFAAL 176

Query: 193 VDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN 252
           VD+YVK G   YAR V   M  ++V+CST+++ G M +G  EDAE IF +   KD+V YN
Sbjct: 177 VDAYVKSGSLGYARRVHGAMPVRSVVCSTALLVGCMKEGLFEDAEAIFNEMEGKDVVAYN 236

Query: 253 AMIEGYSISIETARKALEV-----------------------------------HCQLIK 277
           AM+EGYS + ETA  +LEV                                   HCQ  K
Sbjct: 237 AMVEGYSKTEETAEGSLEVLKAMQRAGFRPTVSTFVSVLGACSLLSSPELGEQVHCQGTK 296

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
           +    D+K+GSALVDMYAKCG+++D RR+F+ M ++NV TWTSMIDGYGKNG  ++AL+L
Sbjct: 297 SGLVLDIKVGSALVDMYAKCGRVEDGRRIFNQMPERNVITWTSMIDGYGKNGLSDEALQL 356

Query: 338 FCMMQECC-VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           F  M+E   V+PN+ TFL  LSAC HAGL+ +G+E F+SME +Y ++P+MEHYACMVDLL
Sbjct: 357 FGEMRERRDVRPNHATFLSILSACAHAGLLSQGQEAFQSMEGEYLLQPRMEHYACMVDLL 416

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456
           GR G + QA  FV  MP +PNSDVWAALL +  LH D+++  +A+ E+F+L+   RPGAY
Sbjct: 417 GRFGGVRQAYDFVRGMPVRPNSDVWAALLGAATLHGDMDICKVASREVFELSRKGRPGAY 476

Query: 457 VALSNTLAAAGKWDSVTELREKMKLR 482
           +A SNTLAAAG+WD V ++RE MK R
Sbjct: 477 MAFSNTLAAAGEWDGVHDVREMMKQR 502


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  336 bits (861), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 178/470 (37%), Positives = 280/470 (59%), Gaps = 43/470 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IHAH+ +  +  N  +  +L+ ++ +CG L YA ++F+ + +R   ++N MI GY +
Sbjct: 498 GRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQ 557

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL-GRMVHAQILKCDV 182
           NG+ +E+L L +++  +G +PD ++ S +L  S+C    V L  +  GR +H  I++  +
Sbjct: 558 NGETQEALRLFKQMQLNGIKPDCFSLSSML--SSC----VSLSDSQKGRELHNFIVRNTM 611

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           + + +L   LVD Y K G   YA  V+D  ++K+VI +  M+S F++ G   DA+ +F +
Sbjct: 612 EEEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQ 671

Query: 243 TVEKDIVVYNAMIEGYS------------------------------ISIETARKALE-- 270
             +++  ++N+++ GY+                              +++ ++  ALE  
Sbjct: 672 MEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHG 731

Query: 271 --VHCQLIKNVFFE-DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
             +H  +IK  F    V L +ALVDMY+KCG I  AR VFD+M  KN+ +W +MI GY K
Sbjct: 732 DQLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSK 791

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           +G   +AL L+  M +  + PN VTFL  LSAC H GLV++G  IF SM+ DY+++ K E
Sbjct: 792 HGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAE 851

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           HY CMVDLLGRAG LE A +FV +MP +P    W ALL +CR+H D++M  +AA  +F+L
Sbjct: 852 HYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAAQRLFEL 911

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTES 497
           +  + PG YV +SN  AAAG+W  V ++R+ MK++GV KD G SW+   S
Sbjct: 912 DPQN-PGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINS 960



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/494 (24%), Positives = 221/494 (44%), Gaps = 87/494 (17%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H H+ +  +  +  +   L+ ++ KCG ++ A Q+F  L +R   +YN ++AGY++
Sbjct: 396 GRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQ 455

Query: 124 NGQVEESLSLVRKLVSS-GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            G+ EE+L L   + S  G +PD +TF+ +L      R++     N GR +HA +++ ++
Sbjct: 456 EGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRND-----NQGRQIHAHLIRANI 510

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             + ++ T LV  Y + G+ +YA+ +F+ M E+N     SMI G+   G  ++A  +F++
Sbjct: 511 TKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQ 570

Query: 243 T----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
                ++ D    ++M+    +S+  ++K  E+H  +++N   E+  L   LVDMYAKCG
Sbjct: 571 MQLNGIKPDCFSLSSMLSS-CVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCG 629

Query: 299 KID-------------------------------DARRVFDHMQQKNVFTWTSMIDGYGK 327
            +D                               DA+ +FD M+Q+N   W S++ GY  
Sbjct: 630 SMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYAN 689

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSAC--------------------------- 360
            G   ++   F  M E  ++ + +T +  ++ C                           
Sbjct: 690 KGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFVNCSVV 749

Query: 361 ---------GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
                       G + K R +F++M         +  +  M+    + G  ++AL    E
Sbjct: 750 LETALVDMYSKCGAITKARTVFDNMN-----GKNIVSWNAMISGYSKHGCSKEALILYEE 804

Query: 412 MPEK---PNSDVWAALLSSCRLHDDVEMA-NIAANEIFKLNANDRPGAYVALSNTLAAAG 467
           MP+K   PN   + A+LS+C     VE    I  +     N   +   Y  + + L  AG
Sbjct: 805 MPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAG 864

Query: 468 KWDSVTELREKMKL 481
           + +   E  EKM +
Sbjct: 865 RLEDAKEFVEKMPI 878



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 185/376 (49%), Gaps = 11/376 (2%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++ + + K G+  N  +   L+  + + G +  A    DE+   ++  +N +IAGY+K  
Sbjct: 196 QLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKIL 255

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             EE+  +  +++  G  PD +TF+  L+     RS     R+ G+ VH++++ C  K D
Sbjct: 256 SWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRS-----RDGGKQVHSKLIACGFKGD 310

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             +  AL+D Y K         VFD M E+N +   S+IS     G   DA  +F +  E
Sbjct: 311 TFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQE 370

Query: 246 ---KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
              K        I   S  +    K  E+H  L++N+   D+ LGSALVDMY+KCG +++
Sbjct: 371 SGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVEE 430

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ-ECCVQPNYVTFLGALSACG 361
           A +VF  + ++N  ++ +++ GY + G   +ALEL+  MQ E  +QP+  TF   L+ C 
Sbjct: 431 AHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCA 490

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
           +    ++GR+I   + R    K  +     +V +    G L  A +    M E+ N+  W
Sbjct: 491 NQRNDNQGRQIHAHLIRANITKNIIVETE-LVHMYSECGRLNYAKEIFNRMAER-NAYSW 548

Query: 422 AALLSSCRLHDDVEMA 437
            +++   + + + + A
Sbjct: 549 NSMIEGYQQNGETQEA 564



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 121/448 (27%), Positives = 207/448 (46%), Gaps = 45/448 (10%)

Query: 12  FSSTHNRHYTLVP-PNQ------------TFPPKLQNYDSLS------------NPLTAT 46
           F+  ++RH+ L+P PN             T   K    DS              NPL  +
Sbjct: 16  FNCHYSRHFFLLPNPNSKSFSAHFGHTTTTIKLKFNGPDSPKPTSIHTKPASDVNPLPYS 75

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALK---YAGQMF 103
           SL   +Q  I+S++   G  IH  +   G  P+  +  K+L+L+ + G L    YA ++F
Sbjct: 76  SL---IQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLF 132

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           +E+P+R L+A+N MI  Y +     E L L  ++  SG   D +TF  ++KA        
Sbjct: 133 EEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAME--- 189

Query: 164 PLPRNLG--RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
               ++G  R + + ++K  +  +  +  ALVD Y + G    A    D +   +V+   
Sbjct: 190 ----DMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWN 245

Query: 222 SMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEG---YSISIETARKALEVHCQLIKN 278
           ++I+G++     E+A  IF + ++  +   N           ++ +     +VH +LI  
Sbjct: 246 AVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIAC 305

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
            F  D  +G+AL+DMYAKC   +   +VFD M ++N  TW S+I    + G+ N AL LF
Sbjct: 306 GFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLF 365

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398
             MQE   + N       L A      + KGRE+   + R+  +   +   + +VD+  +
Sbjct: 366 LRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNL-LNSDIILGSALVDMYSK 424

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALLS 426
            G +E+A +    + E+ N   + ALL+
Sbjct: 425 CGMVEEAHQVFRSLLER-NEVSYNALLA 451



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 145/314 (46%), Gaps = 44/314 (14%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQ----- 101
           SL S L   ++      G ++H  I +  ++    + + L+ ++ KCG++ YA +     
Sbjct: 582 SLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKCGSMDYAWKVYDQT 641

Query: 102 --------------------------MFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVR 135
                                     +FD++ QR  + +N ++AGY   G  +ES +   
Sbjct: 642 IKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSILAGYANKGLKKESFNHFL 701

Query: 136 KLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD-VKADDVLYTALVD 194
           +++ S    D    +M+   + C  S++P   + G  +H+ I+K   V    VL TALVD
Sbjct: 702 EMLESDIEYD--VLTMVTIVNLC--SSLPALEH-GDQLHSLIIKKGFVNCSVVLETALVD 756

Query: 195 SYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEIFRKTVEKDIVV 250
            Y K G  + AR VFD M  KN++   +MISG+   G  ++A    EE+ +K +  + V 
Sbjct: 757 MYSKCGAITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVT 816

Query: 251 YNAMIEGYSISIETARKALEVHCQLIKNVFFE-DVKLGSALVDMYAKCGKIDDARRVFDH 309
           + A++   S       + L +   + ++   E   +  + +VD+  + G+++DA+   + 
Sbjct: 817 FLAILSACS-HTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEK 875

Query: 310 MQ-QKNVFTWTSMI 322
           M  +  V TW +++
Sbjct: 876 MPIEPEVSTWGALL 889


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  324 bits (831), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 172/451 (38%), Positives = 268/451 (59%), Gaps = 11/451 (2%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +  S L  + N +    G K+H  I K G++    +   L+ ++ KCG +  A  +FD+L
Sbjct: 199 TFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVGTSLVGMYAKCGDISKAQVIFDKL 258

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P++ +  +  +IAGY + GQV+ +L L+ K+  +   P+  T++ IL+  T      PL 
Sbjct: 259 PEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCT-----TPLA 313

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
              G+ VH  I++     +  +  AL+  Y K G    AR +F  +  ++V+  T+M++G
Sbjct: 314 LEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTG 373

Query: 227 FMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
           +   GF ++A ++FR+     ++ D + + + +   S S    ++   +H QL+   +  
Sbjct: 374 YAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCS-SPAFLQEGKSIHQQLVHAGYSL 432

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           DV L SALV MYAKCG +DDAR VF+ M ++NV  WT+MI G  ++G   +ALE F  M+
Sbjct: 433 DVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMK 492

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
           +  ++P+ VTF   LSAC H GLV++GR+ F SM  DY +KP +EHY+C VDLLGRAG L
Sbjct: 493 KQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHL 552

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
           E+A   +L MP +P   VW ALLS+CR+H DVE    AA  + KL+ +D  GAYVALSN 
Sbjct: 553 EEAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDD-DGAYVALSNI 611

Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            AAAG+++   ++R+ M+ R V+K+ G SW+
Sbjct: 612 YAAAGRYEDAEKVRQVMEKRDVVKEPGQSWI 642



 Score =  193 bits (490), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 110/375 (29%), Positives = 212/375 (56%), Gaps = 18/375 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA I K+G++PN  +   LL ++ KCG+L  A ++FD +  R + ++  MI  ++ 
Sbjct: 115 GREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVA 174

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
             Q  E+      +  +G +PD  TF  +L A T      P    +G+ VH +I K  ++
Sbjct: 175 GNQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTN-----PELLQVGQKVHMEIAKAGLE 229

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +  + T+LV  Y K G  S A+++FD + EKNV+  T +I+G+  QG V+ A E+  K 
Sbjct: 230 LEPRVGTSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKM 289

Query: 244 VEKDI----VVYNAMIEGYS--ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
            + ++    + Y ++++G +  +++E  +K   VH  +I++ +  ++ + +AL+ MY KC
Sbjct: 290 QQAEVAPNKITYTSILQGCTTPLALEHGKK---VHRYIIQSGYGREIWVVNALITMYCKC 346

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G + +AR++F  +  ++V TWT+M+ GY + G  ++A++LF  MQ+  ++P+ +TF  AL
Sbjct: 347 GGLKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSAL 406

Query: 358 SACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           ++C     + +G+ I + +    YS+   ++  + +V +  + GS++ A     +M E+ 
Sbjct: 407 TSCSSPAFLQEGKSIHQQLVHAGYSLDVYLQ--SALVSMYAKCGSMDDARLVFNQMSER- 463

Query: 417 NSDVWAALLSSCRLH 431
           N   W A+++ C  H
Sbjct: 464 NVVAWTAMITGCAQH 478



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/243 (23%), Positives = 121/243 (49%), Gaps = 17/243 (6%)

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY---SISIETARKALEVH 272
           + + ++  +S    QG +++A  I    + +   VY+ +  G       + +  +  EVH
Sbjct: 60  DTLANSGDVSILCKQGRLKEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVH 119

Query: 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPN 332
             ++K+    +  L + L+ MYAKCG + DARRVFD ++ +N+ +WT+MI+ +       
Sbjct: 120 AAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNL 179

Query: 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI-FESMERDYSMKPKMEHYAC 391
           +A + +  M+    +P+ VTF+  L+A  +  L+  G+++  E  +    ++P++     
Sbjct: 180 EAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVG--TS 237

Query: 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS----------SCRLHDDVEMANIAA 441
           +V +  + G + +A     ++PEK N   W  L++          +  L + ++ A +A 
Sbjct: 238 LVGMYAKCGDISKAQVIFDKLPEK-NVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAP 296

Query: 442 NEI 444
           N+I
Sbjct: 297 NKI 299


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  321 bits (823), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 178/492 (36%), Positives = 273/492 (55%), Gaps = 47/492 (9%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L A S  SAL           G ++H  + ++    + +I   L+ ++ KC   + A ++
Sbjct: 149 LNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAKCERPEDARRV 208

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           FD +P+R + ++N +I  Y +NG V E+L L  +++++G  PD  T S ++ A     ++
Sbjct: 209 FDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAAD 268

Query: 163 VPLPRNLGRMVHAQILKCDVKADD-VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
                  GR VHA ++KCD   DD VL  ALVD Y K G+T  AR +FD M  ++++  T
Sbjct: 269 -----REGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSET 323

Query: 222 SMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS----------ISIETARKAL-- 269
           S+++G+     VEDA+ +F + VEK+++ +N +I  Y+          + ++  R ++  
Sbjct: 324 SILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWP 383

Query: 270 ----------------------EVHCQLIKNVF-FE-----DVKLGSALVDMYAKCGKID 301
                                 + H  ++K  F F+     DV +G++LVDMY K G ID
Sbjct: 384 THYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSID 443

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           D  +VF+ M  ++  +W +MI GY +NG    AL LF  M      P+ VT +G LSACG
Sbjct: 444 DGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACG 503

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
           H+GLVD+GR  F SM  D+ + P  +HY CMVDLLGRAG L++A + + +MP +P+S +W
Sbjct: 504 HSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLW 563

Query: 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
           A+LL +CRLH +VE+    A  +F+L+  +  G YV LSN  A  GKW  V  +R  MK 
Sbjct: 564 ASLLGACRLHKNVELGEWTAGRLFELDPQN-SGPYVLLSNMYAEMGKWAEVFRVRRSMKD 622

Query: 482 RGVLKDTGCSWV 493
           RGV K  GCSW+
Sbjct: 623 RGVSKQPGCSWI 634



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/428 (25%), Positives = 186/428 (43%), Gaps = 73/428 (17%)

Query: 68  HAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV 127
           HA I K+ V   T +   L+  + + G L+ A ++FDE+P R   +YN +++ Y + G+ 
Sbjct: 40  HARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYARLGRP 99

Query: 128 EESLSL---------------VRKLVSSGE-------------RPDGYTFSMILKASTCC 159
           +E+ +L               V  L   G                D +  +    AS   
Sbjct: 100 DEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALS 159

Query: 160 RSNVPLPRNLGRMVHAQILKCDVKADDV-LYTALVDSYVKGGKTSYARIVFDMMLEKNVI 218
                     G  VH  + +    ADDV + +ALVD Y K  +   AR VFD M E+NV+
Sbjct: 160 ACAAEKDSRTGEQVHGLVARSP-HADDVHIRSALVDMYAKCERPEDARRVFDAMPERNVV 218

Query: 219 CSTSMISGFMSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSISIETARKALEVHCQ 274
              S+I+ +   G V +A  +F + +      D V  ++++   +  +   R+  +VH  
Sbjct: 219 SWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACA-GLAADREGRQVHAH 277

Query: 275 LIK-NVFFEDVKLGSALVDMYAKCGK-------------------------------IDD 302
           ++K +   +D+ L +ALVDMYAKCG+                               ++D
Sbjct: 278 MVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVED 337

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           A+ VF  M +KNV  W  +I  Y +NG   +A+ LF  ++   + P + T+   L+ACG+
Sbjct: 338 AQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGN 397

Query: 363 AGLVDKGRE-----IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
              +  G++     + E    D+  +  +     +VD+  + GS++   K    M  + N
Sbjct: 398 IADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDN 457

Query: 418 SDVWAALL 425
              W A++
Sbjct: 458 VS-WNAMI 464



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 76/164 (46%), Gaps = 12/164 (7%)

Query: 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
           A   H +++K+    +  L + LV  YA+ G++ DARRVFD +  +N F++ +++  Y +
Sbjct: 36  ARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYAR 95

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD------YS 381
            G P++A  LF  + +   Q +Y   + AL+  G     D  R    +M  D      YS
Sbjct: 96  LGRPDEARALFEAIPD-PDQCSYNAVVAALARHGRGHAADALR-FLAAMHADDFVLNAYS 153

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
               +   AC  +   R G  EQ    V   P   +  + +AL+
Sbjct: 154 FASALS--ACAAEKDSRTG--EQVHGLVARSPHADDVHIRSALV 193


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  319 bits (818), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 173/455 (38%), Positives = 275/455 (60%), Gaps = 21/455 (4%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L A S PSAL+          G +IH  I K G   +  +   LL ++ KCG+L  A  +
Sbjct: 414 LGACSRPSALKQ---------GRQIHDRIIKAGYITDDRVRTALLSMYAKCGSLMDARNV 464

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           F+ + ++ + A+N MI  Y+++ + + +++  + L+  G +PD  TF+ IL     C+S 
Sbjct: 465 FERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNV---CKS- 520

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
            P    LG+ V + I++   ++D  +  ALV  +V  G    A  +F+ M E++++   +
Sbjct: 521 -PDALELGKWVQSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNT 579

Query: 223 MISGFMSQGFVEDAEEIFR----KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKN 278
           +I+GF+  G  + A + F+      V+ D + +  ++   + S E   +   +H  + + 
Sbjct: 580 IIAGFVQHGENQFAFDYFKMMQESGVKPDQITFTGLLNACA-SPEALTEGRRLHALITEA 638

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
               DV +G+ L+ MY KCG IDDA  VF ++ +KNV++WTSMI GY ++G   +ALELF
Sbjct: 639 ALDCDVVVGTGLISMYTKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELF 698

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398
           C MQ+  V+P+++TF+GALSAC HAGL+ +G   FESM +D++++P+MEHY CMVDL GR
Sbjct: 699 CQMQQEGVKPDWITFVGALSACAHAGLIKEGLHHFESM-KDFNIEPRMEHYGCMVDLFGR 757

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVA 458
           AG L +A++F+ +M  KP+S +W ALL +C++H DVE+A   A +  +L+ ND  G YV 
Sbjct: 758 AGLLHEAVEFINKMQVKPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPND-DGVYVI 816

Query: 459 LSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           LSN  AAAG W  VT++R+ M  RGV+K  G SW+
Sbjct: 817 LSNIYAAAGMWKEVTKMRKVMLDRGVVKKPGQSWI 851



 Score =  172 bits (437), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 119/447 (26%), Positives = 222/447 (49%), Gaps = 19/447 (4%)

Query: 33  LQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLK 92
           L + DS    +   +  S LQ  I       G +IH HI  + ++P+  +   L+ ++ K
Sbjct: 92  LLSVDSPHIQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAK 151

Query: 93  CGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
           CG    A Q+FDE+P + + ++N ++ GY+++ + EE+  L  ++V  G +PD YTF  +
Sbjct: 152 CGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYM 211

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L A    + NV    + G  + + IL      D  + TAL++ ++K G    A  VF+ +
Sbjct: 212 LNACADAK-NV----DKGGELFSLILNAGWDTDLFVGTALINMHIKCGGVDDALKVFNNL 266

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFR----KTVEKDIVVYNAMIEGYSISIETARKA 268
             +++I  TSMI+G       + A  +F+    + V+ D V + ++++  +   E   + 
Sbjct: 267 PRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACN-HPEALEQG 325

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
             VH ++ +     ++ +G+AL+ MY KCG ++DA  VF+ ++ +NV +WT+MI G+ ++
Sbjct: 326 KRVHARMKEVGLDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQH 385

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES-MERDYSMKPKME 387
           G   +A   F  M E  ++PN VTF+  L AC     + +GR+I +  ++  Y    ++ 
Sbjct: 386 GRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRIIKAGYITDDRVR 445

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
               ++ +  + GSL  A + V E   K N   W A++++   H+  + A      + K 
Sbjct: 446 --TALLSMYAKCGSLMDA-RNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKE 502

Query: 448 NANDRPGAYVALSNTLAAA-----GKW 469
                   + ++ N   +      GKW
Sbjct: 503 GIKPDSSTFTSILNVCKSPDALELGKW 529



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 85/330 (25%), Positives = 172/330 (52%), Gaps = 16/330 (4%)

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLG--RMVHAQILKC 180
           K GQ+ E++ ++  + S   +    T+S +L+   C +      +NLG    +H  I   
Sbjct: 81  KAGQLSEAMLVLLSVDSPHIQIHRQTYSSLLQ--LCIKH-----KNLGDGERIHNHIKFS 133

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA---- 236
            ++ D  ++  L+  Y K G T+ A+ +FD M +K+V     ++ G++     E+A    
Sbjct: 134 KIQPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLH 193

Query: 237 EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
           E++ +  V+ D   +  M+   +   +   K  E+   ++   +  D+ +G+AL++M+ K
Sbjct: 194 EQMVQDGVKPDKYTFVYMLNACA-DAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIK 252

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG +DDA +VF+++ ++++ TWTSMI G  ++    QA  LF +M+E  VQP+ V F+  
Sbjct: 253 CGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSL 312

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           L AC H   +++G+ +   M ++  +  ++     ++ +  + GS+E AL+ V  + +  
Sbjct: 313 LKACNHPEALEQGKRVHARM-KEVGLDTEIYVGTALLSMYTKCGSMEDALE-VFNLVKGR 370

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFK 446
           N   W A+++    H  +E A +  N++ +
Sbjct: 371 NVVSWTAMIAGFAQHGRMEEAFLFFNKMIE 400


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  318 bits (815), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 169/455 (37%), Positives = 283/455 (62%), Gaps = 21/455 (4%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L A S PSAL+          G +I  HI + G   +  +   LL ++ KCG+LK A ++
Sbjct: 420 LGACSSPSALKR---------GQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRV 470

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           F+++ ++ + A+N MI  Y+++ Q + +L+  + L+  G +P+  TF+ IL     C+S+
Sbjct: 471 FEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNV---CKSS 527

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
             L   LG+ VH  I+K  +++D  +  ALV  +V  G    A+ +F+ M +++++   +
Sbjct: 528 DSL--ELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNT 585

Query: 223 MISGFMSQGFVEDAEEIFR----KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKN 278
           +I+GF+  G  + A + F+      ++ D + +  ++   + S E   +   +H  + + 
Sbjct: 586 IIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACA-SPEALTEGRRLHALITEA 644

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
            F  DV +G+ L+ MY KCG I+DA +VF  + +KNV++WTSMI GY ++G   +ALELF
Sbjct: 645 AFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMITGYAQHGRGKEALELF 704

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398
             MQ+  V+P+++TF+GALSAC HAGL+++G   F+SM ++++++P+MEHY CMVDL GR
Sbjct: 705 YQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGR 763

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVA 458
           AG L +A++F+++M  +P+S VW ALL +C++H +VE+A  AA +  +L+ ND  G +V 
Sbjct: 764 AGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDN-GVFVI 822

Query: 459 LSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           LSN  AAAG W  V ++R+ M  RGV+K  G SW+
Sbjct: 823 LSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWI 857



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 231/449 (51%), Gaps = 23/449 (5%)

Query: 33  LQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLK 92
           L+  DS    +   +  + LQ  I       G +I+ HI K+GV+P+  +   L+ ++ K
Sbjct: 98  LERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMWNTLINMYAK 157

Query: 93  CGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
           CG    A Q+FD++ ++ + ++N ++ GY+++G  EE+  L  ++V    +PD  TF  +
Sbjct: 158 CGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSM 217

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L A    R NV    + GR ++  ILK     D  + TAL++ ++K G    A  VFD +
Sbjct: 218 LNACADAR-NV----DKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNL 272

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEG--YSISIETAR 266
             ++++  TSMI+G    G  + A  +F++     V+ D V + +++    +  ++E  +
Sbjct: 273 PTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGK 332

Query: 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
           K   VH ++ +  +  ++ +G+A++ MY KCG ++DA  VFD ++ +NV +WT+MI G+ 
Sbjct: 333 K---VHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFA 389

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES-MERDYSMKPK 385
           ++G  ++A   F  M E  ++PN VTF+  L AC     + +G++I +  +E  Y    +
Sbjct: 390 QHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDR 449

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIF 445
           +     ++ +  + GSL+ A + V E   K N   W A++++   H+  + A      + 
Sbjct: 450 VR--TALLSMYAKCGSLKDAHR-VFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALL 506

Query: 446 KLNANDRPGAYVALSNTLAAA-----GKW 469
           K         + ++ N   ++     GKW
Sbjct: 507 KEGIKPNSSTFTSILNVCKSSDSLELGKW 535



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 177/330 (53%), Gaps = 16/330 (4%)

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLG--RMVHAQILKC 180
           K GQ  E++ ++ ++ SS  +    T+S +L+   C +      +NLG    ++  I K 
Sbjct: 87  KAGQFNEAMQVLERVDSSHIQIYRQTYSALLQ--LCIKF-----KNLGDGERIYNHIKKS 139

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA---- 236
            V+ D  ++  L++ Y K G T  A+ +FD M EK+V     ++ G++  G  E+A    
Sbjct: 140 GVQPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLH 199

Query: 237 EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
           E++ + +V+ D   + +M+   +       K  E++  ++K  +  D+ +G+AL++M+ K
Sbjct: 200 EQMVQDSVKPDKRTFVSMLNACA-DARNVDKGRELYNLILKAGWDTDLFVGTALINMHIK 258

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG I DA +VFD++  +++ TWTSMI G  ++G   QA  LF  M+E  VQP+ V F+  
Sbjct: 259 CGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSL 318

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           L AC H   +++G+++   M ++     ++     ++ +  + GS+E AL+ V ++ +  
Sbjct: 319 LRACNHPEALEQGKKVHARM-KEVGWDTEIYVGTAILSMYTKCGSMEDALE-VFDLVKGR 376

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFK 446
           N   W A+++    H  ++ A +  N++ +
Sbjct: 377 NVVSWTAMIAGFAQHGRIDEAFLFFNKMIE 406


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  318 bits (814), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 169/455 (37%), Positives = 283/455 (62%), Gaps = 21/455 (4%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L A S PSAL+          G +I  HI + G   +  +   LL ++ KCG+LK A ++
Sbjct: 420 LGACSSPSALKR---------GQQIQDHIIEAGYGSDDRVRTALLSMYAKCGSLKDAHRV 470

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           F+++ ++ + A+N MI  Y+++ Q + +L+  + L+  G +P+  TF+ IL     C+S+
Sbjct: 471 FEKISKQNVVAWNAMITAYVQHEQYDNALATFQALLKEGIKPNSSTFTSILNV---CKSS 527

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
             L   LG+ VH  I+K  +++D  +  ALV  +V  G    A+ +F+ M +++++   +
Sbjct: 528 DSL--ELGKWVHFLIMKAGLESDLHVSNALVSMFVNCGDLMSAKNLFNDMPKRDLVSWNT 585

Query: 223 MISGFMSQGFVEDAEEIFR----KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKN 278
           +I+GF+  G  + A + F+      ++ D + +  ++   + S E   +   +H  + + 
Sbjct: 586 IIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFTGLLNACA-SPEALTEGRRLHALITEA 644

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
            F  DV +G+ L+ MY KCG I+DA +VF  + +KNV++WTSMI GY ++G   +ALELF
Sbjct: 645 AFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLPKKNVYSWTSMIAGYAQHGRGKEALELF 704

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398
             MQ+  V+P+++TF+GALSAC HAGL+++G   F+SM ++++++P+MEHY CMVDL GR
Sbjct: 705 YQMQQEGVKPDWITFVGALSACAHAGLIEEGLHHFQSM-KEFNIEPRMEHYGCMVDLFGR 763

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVA 458
           AG L +A++F+++M  +P+S VW ALL +C++H +VE+A  AA +  +L+ ND  G +V 
Sbjct: 764 AGLLNEAVEFIIKMQVEPDSRVWGALLGACQVHLNVELAEKAAQKKLELDPNDN-GVFVI 822

Query: 459 LSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           LSN  AAAG W  V ++R+ M  RGV+K  G SW+
Sbjct: 823 LSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSWI 857



 Score =  184 bits (467), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 231/449 (51%), Gaps = 23/449 (5%)

Query: 33  LQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLK 92
           L+  DS    +   +  + LQ  I       G +I+ HI K+GV+P+  +   L+ ++ K
Sbjct: 98  LERVDSSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGVQPDIFMRNTLINMYAK 157

Query: 93  CGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
           CG    A Q+FD++ ++ + ++N ++ GY+++G  EE+  L  ++V    +PD  TF  +
Sbjct: 158 CGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQMVQDSVKPDKRTFVSM 217

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L A    R NV    + GR ++  ILK     D  + TAL++ ++K G    A  VFD +
Sbjct: 218 LNACADAR-NV----DKGRELYNLILKAGWDTDLFVGTALINMHIKCGDIGDATKVFDNL 272

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEG--YSISIETAR 266
             ++++  TSMI+G    G  + A  +F++     V+ D V + +++    +  ++E  +
Sbjct: 273 PTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRACNHPEALEQGK 332

Query: 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
           K   VH ++ +  +  ++ +G+A++ MY KCG ++DA  VFD ++ +NV +WT+MI G+ 
Sbjct: 333 K---VHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSWTAMIAGFA 389

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES-MERDYSMKPK 385
           ++G  ++A   F  M E  ++PN VTF+  L AC     + +G++I +  +E  Y    +
Sbjct: 390 QHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIEAGYGSDDR 449

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIF 445
           +     ++ +  + GSL+ A + V E   K N   W A++++   H+  + A      + 
Sbjct: 450 VR--TALLSMYAKCGSLKDAHR-VFEKISKQNVVAWNAMITAYVQHEQYDNALATFQALL 506

Query: 446 KLNANDRPGAYVALSNTLAAA-----GKW 469
           K         + ++ N   ++     GKW
Sbjct: 507 KEGIKPNSSTFTSILNVCKSSDSLELGKW 535



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 91/330 (27%), Positives = 176/330 (53%), Gaps = 16/330 (4%)

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLG--RMVHAQILKC 180
           K GQ  E++ ++ ++ SS  +    T+S +L+   C +      +NLG    ++  I K 
Sbjct: 87  KAGQFNEAMQVLERVDSSHIQIYRQTYSALLQ--LCIKF-----KNLGDGERIYNHIKKS 139

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA---- 236
            V+ D  +   L++ Y K G T  A+ +FD M EK+V     ++ G++  G  E+A    
Sbjct: 140 GVQPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLH 199

Query: 237 EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
           E++ + +V+ D   + +M+   +       K  E++  ++K  +  D+ +G+AL++M+ K
Sbjct: 200 EQMVQDSVKPDKRTFVSMLNACA-DARNVDKGRELYNLILKAGWDTDLFVGTALINMHIK 258

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG I DA +VFD++  +++ TWTSMI G  ++G   QA  LF  M+E  VQP+ V F+  
Sbjct: 259 CGDIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSL 318

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           L AC H   +++G+++   M ++     ++     ++ +  + GS+E AL+ V ++ +  
Sbjct: 319 LRACNHPEALEQGKKVHARM-KEVGWDTEIYVGTAILSMYTKCGSMEDALE-VFDLVKGR 376

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFK 446
           N   W A+++    H  ++ A +  N++ +
Sbjct: 377 NVVSWTAMIAGFAQHGRIDEAFLFFNKMIE 406


>gi|357167614|ref|XP_003581249.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300-like
            [Brachypodium distachyon]
          Length = 1430

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 178/492 (36%), Positives = 273/492 (55%), Gaps = 47/492 (9%)

Query: 43   LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
            L A S  SAL           G+++HA ++K+    +  I   LL ++ KC   + A ++
Sbjct: 890  LNAYSFASALSACAAEKDSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRV 949

Query: 103  FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
            F+ +P+R + ++N +I  Y +NG V E+L L   ++ +G  PD  T + ++ A     ++
Sbjct: 950  FEAMPERNIVSWNSLITCYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAAD 1009

Query: 163  VPLPRNLGRMVHAQILKCD-VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
                   GR VHA+++K D  + D VL  ALVD Y K G+T  AR VFD M  ++V+  T
Sbjct: 1010 -----REGRQVHARVVKSDRFREDMVLSNALVDMYAKCGRTRAARCVFDRMASRSVVSET 1064

Query: 222  SMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS----------ISIETARKAL-- 269
            S+I+G+     VEDA+ +F + VEK+++ +N +I  Y+          + +   R+++  
Sbjct: 1065 SLITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAAYAQNGEEEEALRLFVRLKRESVWP 1124

Query: 270  ----------------------EVHCQLIKNVF-FE-----DVKLGSALVDMYAKCGKID 301
                                  + H  ++K  F F+     DV +G++LVDMY K G ID
Sbjct: 1125 THYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSID 1184

Query: 302  DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            D  +VF+ M  ++  +W +MI G+ +NG    AL LF  M      P+ VT +G LSACG
Sbjct: 1185 DGAKVFERMAARDNVSWNAMIVGHAQNGRAKDALHLFERMLCSKESPDSVTMIGVLSACG 1244

Query: 362  HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
            H+GLV++GR  F SM  D+ + P  +HY CM+DLLGRAG L++  + + EM  +P++ +W
Sbjct: 1245 HSGLVEEGRRYFRSMTEDHGIIPSQDHYTCMIDLLGRAGHLKEVEELIKEMSMEPDAVLW 1304

Query: 422  AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
            A+LL SCRLH +VEM   AA ++F+L+  +  G YV LSN  A  GKW  V  +R  MK 
Sbjct: 1305 ASLLGSCRLHKNVEMGEWAAGKLFELDPRN-SGPYVLLSNMYAELGKWADVFRVRSSMKH 1363

Query: 482  RGVLKDTGCSWV 493
            RGV K  GCSW+
Sbjct: 1364 RGVSKQPGCSWI 1375



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 182/357 (50%), Gaps = 12/357 (3%)

Query: 93  CGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
           CG +  A ++F+ + +R L ++N M+ GY+++  +  +L L +++       D  T   +
Sbjct: 331 CGRIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSV 390

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGG--KTSYARIVFD 210
           L A T       L    G  VHA  +KC   +  +L  ALV  Y K G  +++   ++F+
Sbjct: 391 LSACTGI-----LDIGKGEEVHAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFE 445

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT---VEKDIVVYNAMIEGYSISIETARK 267
           M  E++     S+ISG+      E A     K    V  +   +++ +   + +I   ++
Sbjct: 446 MGSERDSYSWNSLISGYERHSMSEAALYALTKMQSEVTPNQSTFSSALAACA-NIFLLKQ 504

Query: 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
            +++H  +I+  +  D  L S L+DMY KC + D + R+F+    ++V  W SMI G   
Sbjct: 505 GMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAY 564

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           +G     L+LF  MQ+  ++ + VTFLGAL +C   G V  GR  F  M  D S+ P++E
Sbjct: 565 SGKGEYGLDLFDEMQKQGIKADSVTFLGALVSCISEGHVRLGRSYFTLM-MDESIIPRIE 623

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
           HY CM++LLG+ G + +   FV  MP +P + +W  +   CR + + ++   AA  I
Sbjct: 624 HYECMIELLGKHGCMVELEDFVEHMPFEPTTAMWLRIFDCCREYGNRKLGERAAKCI 680



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/433 (26%), Positives = 203/433 (46%), Gaps = 60/433 (13%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++H HI K   + N  +   L+ ++  C  L  A + FD++ +    ++N ++  Y   G
Sbjct: 172 QLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDILEPNAISWNVIVRRYHLAG 231

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             + ++ +  +++S+G RP GYT S    A   CR N  L    GR +HA +L+   +  
Sbjct: 232 MGDMAVDMFFRMLSAGVRPLGYTVS---HAVLACRDNNALEE--GRCIHAFVLRHGYEHH 286

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             + +++VD Y K G    A+ +F++   K+++ STS++SG  S G + DA+ +F    E
Sbjct: 287 VHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCGRIADAKRVFEGMKE 346

Query: 246 KDIVVYNAMIEGYSISIETA----------------------------------RKALEV 271
           +++V +NAM+ GY  S++                                     K  EV
Sbjct: 347 RNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLSACTGILDIGKGEEV 406

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARR--VFDHMQQKNVFTWTSMIDGYGKNG 329
           H   IK  FF    L +ALV MY+KCG +  A R  +F+   +++ ++W S+I GY ++ 
Sbjct: 407 HAFAIKCGFFSSPILKNALVRMYSKCGCLRSAERLLLFEMGSERDSYSWNSLISGYERHS 466

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD-YSMKPKMEH 388
               AL     MQ   V PN  TF  AL+AC +  L+ +G +I   M R  Y +   +  
Sbjct: 467 MSEAALYALTKMQS-EVTPNQSTFSSALAACANIFLLKQGMQIHAYMIRKGYEIDDILR- 524

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDV--WAALLSSCR----------LHDDVEM 436
            + ++D+  +    + +++       +P+ DV  W +++  C           L D+++ 
Sbjct: 525 -SVLIDMYCKCRQFDYSIRI---FEARPSRDVILWNSMIFGCAYSGKGEYGLDLFDEMQK 580

Query: 437 ANIAANEIFKLNA 449
             I A+ +  L A
Sbjct: 581 QGIKADSVTFLGA 593



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 113/435 (25%), Positives = 202/435 (46%), Gaps = 54/435 (12%)

Query: 93  CGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
           CG++  A ++FD +P R   ++N +I    + G   E+LSL   + S G RP   T + +
Sbjct: 98  CGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLGIRPKDATMASV 157

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L   +CC   + L     R +H  I K D +++ +L TALVD Y      + AR  FD +
Sbjct: 158 L---SCCAECLDLCG--ARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADARRAFDDI 212

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRK-----------TVEKDIVV---YNAMIEGY 258
           LE N I    ++  +   G  + A ++F +           TV   ++     NA+ EG 
Sbjct: 213 LEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNNALEEGR 272

Query: 259 SISIETARKALEVHCQLIKNVF--------------------FEDVKLGSALVDMYAKCG 298
            I     R   E H  +  +V                      +D+ + +++V   A CG
Sbjct: 273 CIHAFVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMSTSIVSGLASCG 332

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           +I DA+RVF+ M+++N+ +W +M+ GY ++ +   AL LF  M++   + + +T    LS
Sbjct: 333 RIADAKRVFEGMKERNLVSWNAMLTGYIRSMDLTGALLLFQQMRQETREFDAITLGSVLS 392

Query: 359 ACGHAGLVD--KGREIFE-SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL-EMPE 414
           AC   G++D  KG E+   +++  +   P +++   +V +  + G L  A + +L EM  
Sbjct: 393 AC--TGILDIGKGEEVHAFAIKCGFFSSPILKN--ALVRMYSKCGCLRSAERLLLFEMGS 448

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
           + +S  W +L+S    H    M+  A   + K+ +   P      S+ LAA     ++  
Sbjct: 449 ERDSYSWNSLISGYERH---SMSEAALYALTKMQSEVTPNQST-FSSALAACA---NIFL 501

Query: 475 LREKMKLRGVLKDTG 489
           L++ M++   +   G
Sbjct: 502 LKQGMQIHAYMIRKG 516



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 171/406 (42%), Gaps = 67/406 (16%)

Query: 86   LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL------------ 133
            L+  + + G L  A ++FDE+P     +YN +++ + + G+  ++ +L            
Sbjct: 801  LVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADARALFHAIPDPDQCSY 860

Query: 134  ---VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL-----------GRMVHAQILK 179
               +  L       D   F   + A     +       L           G  VHA + K
Sbjct: 861  NAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEKDSRTGVQVHALVSK 920

Query: 180  CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
                 D  + +AL+D Y K      AR VF+ M E+N++   S+I+ +   G V +A  +
Sbjct: 921  SPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLITCYEQNGPVGEALVL 980

Query: 240  FRKTVEKDIV---VYNAMIEGYSISIETARKALEVHCQLIK-NVFFEDVKLGSALVDMYA 295
            F   ++   V   V  A +      +   R+  +VH +++K + F ED+ L +ALVDMYA
Sbjct: 981  FVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFREDMVLSNALVDMYA 1040

Query: 296  KCGK-------------------------------IDDARRVFDHMQQKNVFTWTSMIDG 324
            KCG+                               ++DA+ VF  M +KNV  W  +I  
Sbjct: 1041 KCGRTRAARCVFDRMASRSVVSETSLITGYARSANVEDAQMVFSQMVEKNVIAWNVLIAA 1100

Query: 325  YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE-----IFESMERD 379
            Y +NG   +AL LF  ++   V P + T+   L+ACG+   +  G++     + E    D
Sbjct: 1101 YAQNGEEEEALRLFVRLKRESVWPTHYTYGNVLNACGNVADLQLGQQAHVHVLKEGFRFD 1160

Query: 380  YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
            +  +  +     +VD+  + GS++   K    M  + N   W A++
Sbjct: 1161 FGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVS-WNAMI 1205



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 116/262 (44%), Gaps = 34/262 (12%)

Query: 178  LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
            LK    A+  L   LV +Y + G+   AR VFD +   N     +++S     G   DA 
Sbjct: 787  LKSPFVAETFLLNTLVSAYARLGRLPDARRVFDEIPHPNTFSYNALLSAHARLGRPADAR 846

Query: 238  EIFRKTVEKDIVVYNAMI--------------------------EGYSISI--------E 263
             +F    + D   YNA+I                            YS +         +
Sbjct: 847  ALFHAIPDPDQCSYNAVIAALAQHSRGADALLFLAAMHADDFVLNAYSFASALSACAAEK 906

Query: 264  TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMID 323
             +R  ++VH  + K+   +DV +GSAL+DMYAKC   ++ARRVF+ M ++N+ +W S+I 
Sbjct: 907  DSRTGVQVHALVSKSPHAKDVYIGSALLDMYAKCEWPEEARRVFEAMPERNIVSWNSLIT 966

Query: 324  GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK 383
             Y +NG   +AL LF  M +    P+ VT    +SAC       +GR++   + +    +
Sbjct: 967  CYEQNGPVGEALVLFVSMMKAGFVPDEVTLASVMSACAGLAADREGRQVHARVVKSDRFR 1026

Query: 384  PKMEHYACMVDLLGRAGSLEQA 405
              M     +VD+  + G    A
Sbjct: 1027 EDMVLSNALVDMYAKCGRTRAA 1048



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 115/255 (45%), Gaps = 15/255 (5%)

Query: 188 LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKD 247
           L+   ++S    G  + AR +FD+M  ++     ++I+     G   +A  +F       
Sbjct: 87  LFNRAIESLAACGSVADARELFDLMPLRDGGSWNAIITASSRAGHPSEALSLFSNMNSLG 146

Query: 248 IVVYNA-MIEGYSISIETAR--KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDAR 304
           I   +A M    S   E      A ++H  + K  F  +V LG+ALVD+Y  C  + DAR
Sbjct: 147 IRPKDATMASVLSCCAECLDLCGARQLHGHIAKRDFQSNVILGTALVDVYGNCFLLADAR 206

Query: 305 RVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG 364
           R FD + + N  +W  ++  Y   G  + A+++F  M    V+P   T   A+ AC    
Sbjct: 207 RAFDDILEPNAISWNVIVRRYHLAGMGDMAVDMFFRMLSAGVRPLGYTVSHAVLACRDNN 266

Query: 365 LVDKGREIFESMERDYSMKPKMEHY----ACMVDLLGRAGSLEQALKFVLEMPEKP---N 417
            +++GR I       + ++   EH+    + +VD+  + G+++ A       P K    +
Sbjct: 267 ALEEGRCIHA-----FVLRHGYEHHVHVRSSVVDMYAKCGAMDAAQSLFNLAPMKDMVMS 321

Query: 418 SDVWAALLSSCRLHD 432
           + + + L S  R+ D
Sbjct: 322 TSIVSGLASCGRIAD 336



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 46/86 (53%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IHA++ + G + +  +   L+ ++ KC    Y+ ++F+  P R +  +N MI G   
Sbjct: 505 GMQIHAYMIRKGYEIDDILRSVLIDMYCKCRQFDYSIRIFEARPSRDVILWNSMIFGCAY 564

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTF 149
           +G+ E  L L  ++   G + D  TF
Sbjct: 565 SGKGEYGLDLFDEMQKQGIKADSVTF 590


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  314 bits (805), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 170/462 (36%), Positives = 265/462 (57%), Gaps = 48/462 (10%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           + H  I K G + N  +   L+ ++ K G +++A ++FD++PQR + ++N MIAGY++NG
Sbjct: 184 EFHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAGYVQNG 243

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
            +E++L L +++     + D  T++ ++     C  +V     L   +  Q L       
Sbjct: 244 LIEDALKLFQEI----PKRDVITWNTMMAGYAQC-GDVENAVELFEKMPEQNL------- 291

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
            V +  ++  YV+ G    A  +F +M E+NVI   ++ISGF   G VE+A ++F+   E
Sbjct: 292 -VSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEEALKLFKTMPE 350

Query: 246 KDIVVYNAMIEGYS----------------------------------ISIETARKALEV 271
            ++V +NAMI GYS                                   ++    +  E 
Sbjct: 351 CNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAALAVLEQGNEA 410

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
           H  +I++ F  DV +G+ LV MYAKCG I+DAR+VFD M+Q++  + ++MI GY  NG  
Sbjct: 411 HEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAINGCS 470

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC 391
            ++LELF  MQ   ++P+ VTF+G LSAC HAGLVD+GR+ F+ M R Y + P MEHY C
Sbjct: 471 KESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGC 530

Query: 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451
           M+DLLGRAG  ++A   + +MP KP++D+W +LLS+CR H+++++    A  +  LN  +
Sbjct: 531 MIDLLGRAGCFDEANDLINKMPIKPDADMWGSLLSACRTHNNIDLGEKVAQHLIALNPQN 590

Query: 452 RPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            P  YV LSN  AAAG+WD +  +R +MK R V K  GCSW+
Sbjct: 591 -PAPYVLLSNIYAAAGRWDDIGSVRNRMKDRKVKKKLGCSWI 631



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 117/424 (27%), Positives = 215/424 (50%), Gaps = 50/424 (11%)

Query: 31  PKLQNYDSL-SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVK-PNTNISIKLLI 88
           P    YDSL    L A SLP A               +HAH+ +T  +  + ++  KL+ 
Sbjct: 62  PHSSTYDSLLQGCLNAKSLPDAKL-------------LHAHMIQTQFECQDISLGNKLVS 108

Query: 89  LHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYT 148
           +++K G+L  A ++FDE+P + + ++  MIA Y ++   +E+L    ++   G +P+ +T
Sbjct: 109 IYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFT 168

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIV 208
           F+ IL A T           LG   H +I+K   +++  +   LVD Y K G   +AR +
Sbjct: 169 FASILPACTDLEV-------LGEF-HDEIVKGGFESNVFVGNGLVDMYAKRGCIEFAREL 220

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI--SIETAR 266
           FD M +++V+   +MI+G++  G +EDA ++F++  ++D++ +N M+ GY+    +E A 
Sbjct: 221 FDKMPQRDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAV 280

Query: 267 KALE-----------------VHCQLIKNVF--FE-----DVKLGSALVDMYAKCGKIDD 302
           +  E                 V    +K  F  F+     +V   +A++  +A+ G++++
Sbjct: 281 ELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIMPERNVISWNAVISGFAQNGQVEE 340

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           A ++F  M + NV +W +MI GY +NG    AL+LF  MQ   ++PN  TF   L AC  
Sbjct: 341 ALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAA 400

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
             ++++G E  E + R    +  +     +V +  + GS+E A K    M ++ ++ + A
Sbjct: 401 LAVLEQGNEAHEVVIRS-GFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSA 459

Query: 423 ALLS 426
            ++ 
Sbjct: 460 MIVG 463



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 118/254 (46%), Gaps = 46/254 (18%)

Query: 222 SMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIK 277
            ++     QG + +A  I +  VE  I      Y+++++G  ++ ++   A  +H  +I+
Sbjct: 34  GLVKSLCKQGRLREALHILQDMVENGIWPHSSTYDSLLQG-CLNAKSLPDAKLLHAHMIQ 92

Query: 278 NVF-FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
             F  +D+ LG+ LV +Y K G + +ARRVFD M  KNV +WT+MI  Y ++ +  +AL 
Sbjct: 93  TQFECQDISLGNKLVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALG 152

Query: 337 LFCMMQECCVQPNYVTFLGALSAC--------------------------------GHAG 364
            F  MQ+  +QPN+ TF   L AC                                   G
Sbjct: 153 FFYEMQDVGIQPNHFTFASILPACTDLEVLGEFHDEIVKGGFESNVFVGNGLVDMYAKRG 212

Query: 365 LVDKGREIFESM-ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA 423
            ++  RE+F+ M +RD      +  +  M+    + G +E ALK   E+P++ +   W  
Sbjct: 213 CIEFARELFDKMPQRD------VVSWNAMIAGYVQNGLIEDALKLFQEIPKR-DVITWNT 265

Query: 424 LLSSCRLHDDVEMA 437
           +++      DVE A
Sbjct: 266 MMAGYAQCGDVENA 279



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 58/100 (58%), Gaps = 2/100 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G + H  + ++G + +  +   L+ ++ KCG+++ A ++FD + Q+  ++ + MI GY  
Sbjct: 407 GNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAMIVGYAI 466

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           NG  +ESL L  ++  +G +PD  TF  +L  S CC + +
Sbjct: 467 NGCSKESLELFEQMQFTGLKPDRVTFVGVL--SACCHAGL 504


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 165/436 (37%), Positives = 260/436 (59%), Gaps = 30/436 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IHAH+ +  +  N  +  +L+ ++ +CG L YA ++F+ + +R   ++N MI GY +
Sbjct: 297 GRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQ 356

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG+ +E+L L +++  +G +PD ++ S +L  S+C   +       GR +H  I++  ++
Sbjct: 357 NGETQEALRLFKQMQLNGIKPDCFSLSSML--SSCVSLS---DSQKGRELHNFIVRNTME 411

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEK--NVICSTSMISGFMSQGFVEDAEEIFR 241
            + +L   LVD Y K G   YA  V+D  ++K  N     S+++G+ ++G  +++   F 
Sbjct: 412 EEGILQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFL 471

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
           + +E DI  Y+ +     +++                     + L +ALVDMY+KCG I 
Sbjct: 472 EMLESDIE-YDVLTMVTIVNL---------------------LVLETALVDMYSKCGAIT 509

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            AR VFD+M  KN+ +W +MI GY K+G   +AL L+  M +  + PN VTFL  LSAC 
Sbjct: 510 KARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACS 569

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
           H GLV++G  IF SM+ DY+++ K EHY CMVDLLGRAG LE A +FV +MP +P    W
Sbjct: 570 HTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTW 629

Query: 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
            ALL +CR+H D++M  +AA  +F+L+  + PG YV +SN  AAAG+W  V ++R+ MK+
Sbjct: 630 GALLGACRVHKDMDMGRLAAQRLFELDPQN-PGPYVIMSNIYAAAGRWKEVEDIRQMMKM 688

Query: 482 RGVLKDTGCSWVGTES 497
           +GV KD G SW+   S
Sbjct: 689 KGVKKDPGVSWIEINS 704



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/396 (28%), Positives = 206/396 (52%), Gaps = 20/396 (5%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALK--- 97
           NPL  +SL   +Q  I+S++   G  IH  +   G  P+  +  K+L+L+ + G L    
Sbjct: 70  NPLPYSSL---IQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLC 126

Query: 98  YAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           YA ++F+E+P+R L+A+N MI  Y +     E+  +  +++  G  PD +TF+  L+   
Sbjct: 127 YARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCG 186

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
             RS     R+ G+ VH++++ C  K D  +  AL+D Y K         VFD M E+N 
Sbjct: 187 ALRS-----RDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQ 241

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKT------VEKDIVVYNAMIEGYSISIETARKALEV 271
           +   S+IS     G   DA  +F +       ++ D   +  ++     +     +  ++
Sbjct: 242 VTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLT-LCANQRNDNQGRQI 300

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
           H  LI+    +++ + + LV MY++CG+++ A+ +F+ M ++N ++W SMI+GY +NG  
Sbjct: 301 HAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGET 360

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC 391
            +AL LF  MQ   ++P+  +    LS+C       KGRE+   + R+ +M+ +      
Sbjct: 361 QEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRN-TMEEEGILQVV 419

Query: 392 MVDLLGRAGSLEQALKFVLEMPEKP-NSDVWAALLS 426
           +VD+  + GS++ A K   +  +K  N+ +W ++L+
Sbjct: 420 LVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILA 455



 Score =  159 bits (403), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/440 (25%), Positives = 212/440 (48%), Gaps = 33/440 (7%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H+ +   G K +T +   L+ ++ KC   +   ++FDE+ +R    +N +I+   +
Sbjct: 194 GKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQ 253

Query: 124 NGQVEESLSLVRKLVSS--GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            G   ++L L  ++  S  G +PD +TF+ +L      R++     N GR +HA +++ +
Sbjct: 254 FGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRND-----NQGRQIHAHLIRAN 308

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +  + ++ T LV  Y + G+ +YA+ +F+ M E+N     SMI G+   G  ++A  +F+
Sbjct: 309 ITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFK 368

Query: 242 KT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           +     ++ D    ++M+    +S+  ++K  E+H  +++N   E+  L   LVDMYAKC
Sbjct: 369 QMQLNGIKPDCFSLSSMLSS-CVSLSDSQKGRELHNFIVRNTMEEEGILQVVLVDMYAKC 427

Query: 298 GKIDDARRVFDHM--QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           G +D A +V+D    + +N   W S++ GY   G   ++   F  M E  ++ + +T + 
Sbjct: 428 GSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVT 487

Query: 356 ALSAC----------GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
            ++               G + K R +F++M         +  +  M+    + G  ++A
Sbjct: 488 IVNLLVLETALVDMYSKCGAITKARTVFDNMN-----GKNIVSWNAMISGYSKHGCSKEA 542

Query: 406 LKFVLEMPEK---PNSDVWAALLSSCRLHDDVEMA-NIAANEIFKLNANDRPGAYVALSN 461
           L    EMP+K   PN   + A+LS+C     VE    I  +     N   +   Y  + +
Sbjct: 543 LILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVD 602

Query: 462 TLAAAGKWDSVTELREKMKL 481
            L  AG+ +   E  EKM +
Sbjct: 603 LLGRAGRLEDAKEFVEKMPI 622



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 74/276 (26%), Positives = 128/276 (46%), Gaps = 10/276 (3%)

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGG---KTSYARIVFDMMLEKNVICSTSMISG 226
           G+ +H Q++      D  L T ++  Y + G      YAR +F+ M E+N+    +MI  
Sbjct: 90  GKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFEEMPERNLTAWNTMILA 149

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEG---YSISIETARKALEVHCQLIKNVFFED 283
           +       +A  IF + ++  +   N           ++ +     +VH +LI   F  D
Sbjct: 150 YARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGD 209

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
             +G+AL+DMYAKC   +   +VFD M ++N  TW S+I    + G+ N AL LF  MQE
Sbjct: 210 TFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQE 269

Query: 344 C--CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGS 401
               +QP+  TF   L+ C +    ++GR+I   + R    K  +     +V +    G 
Sbjct: 270 SEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETE-LVHMYSECGR 328

Query: 402 LEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           L  A +    M E+ N+  W +++   + + + + A
Sbjct: 329 LNYAKEIFNRMAER-NAYSWNSMIEGYQQNGETQEA 363


>gi|297739711|emb|CBI29893.3| unnamed protein product [Vitis vinifera]
          Length = 784

 Score =  313 bits (802), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 166/479 (34%), Positives = 282/479 (58%), Gaps = 25/479 (5%)

Query: 27  QTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKL 86
           Q    + Q YDS+   LT     +A++          G ++HAH+ KT  +P   +  +L
Sbjct: 4   QGLEVEFQGYDSV---LTECISQTAIRE---------GQRVHAHMIKTCYEPPVYLRTRL 51

Query: 87  LILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDG 146
           ++L+ KC  L  A ++ DE+P+R + ++  MI+GY + G   E+L L  +++ SG  P+ 
Sbjct: 52  IVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNE 111

Query: 147 YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR 206
           +TF+ +L   T C S+      LGR +H+ ++K   ++   + ++L+D Y K GK   AR
Sbjct: 112 FTFATVL---TSCTSSSGF--QLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEAR 166

Query: 207 IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISI 262
            VFD + E++V+  T++ISG+   G  E+A ++FR+     +  + V Y +++   S  +
Sbjct: 167 RVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALS-GL 225

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
                  +VH  +++      V L ++L+DMY+KCG +  +RR+FD M ++ V +W +M+
Sbjct: 226 AALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAML 285

Query: 323 DGYGKNGNPNQALELFCMM-QECCVQPNYVTFLGALSACGHAGLVDKGREIF-ESMERDY 380
            GY K+G   +A+ELF +M +E  V+P+ VTFL  LS C H G+ D+G EIF E + +  
Sbjct: 286 VGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKD 345

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIA 440
             +P++EHY C+VDL GRAG +E+A +F+ +MP +P + +W +LL +CR+H +V +    
Sbjct: 346 GFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFV 405

Query: 441 ANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           A  + ++ + +  G YV LSN  A+AG+WD V  +RE MK + V+K+ G SW+  +  L
Sbjct: 406 ARRLLEIESEN-AGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWIELDQTL 463


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 177/492 (35%), Positives = 274/492 (55%), Gaps = 47/492 (9%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L A S  SAL    +      G ++HA +TK+    +  I   L+ ++ KC   + A ++
Sbjct: 145 LNAYSFASALSACASEKASRTGEQVHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKV 204

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           FD +P+R + ++N +I  Y +NG V+E+L+L  +++  G  PD  T + ++ A     + 
Sbjct: 205 FDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSAC----AG 260

Query: 163 VPLPRNLGRMVHAQILKCD-VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
           +   R  GR VH +++K D  + D VL  ALVD Y K G+T  A+ VFD M  ++V+  T
Sbjct: 261 LAAGRE-GRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSET 319

Query: 222 SMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS----------ISIETARKAL-- 269
           SMI+G+     V DA+ +F + VEK++V +N +I  Y+          + +   R+++  
Sbjct: 320 SMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVWP 379

Query: 270 ----------------------EVHCQLIKNVF-FE-----DVKLGSALVDMYAKCGKID 301
                                 + H  ++K  F F+     DV +G++LVDMY K G I 
Sbjct: 380 THYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSIS 439

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           D  +VF+ M  ++  +W +MI GY +NG    AL LF  M     +P+ VT +G LSACG
Sbjct: 440 DGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSACG 499

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
           H+GLV +GR  F+SM  D+ + P  +HY CM+DLLGRAG L++  + +  MP +P++ +W
Sbjct: 500 HSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAVLW 559

Query: 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
           A+LL +CRLH +++M   AA ++F+L+  D  G YV LSN  A  GKW  V  +R  MK 
Sbjct: 560 ASLLGACRLHKNIDMGEWAAGKLFELDP-DNSGPYVLLSNMYAELGKWADVFRVRRSMKH 618

Query: 482 RGVLKDTGCSWV 493
           RGV K  GCSW+
Sbjct: 619 RGVSKQPGCSWI 630



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 102/376 (27%), Positives = 171/376 (45%), Gaps = 48/376 (12%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL------------ 133
           LL  + + G+L  A ++FD +P R   +YN +++   + G+ +++L+L            
Sbjct: 56  LLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPDPDQCSY 115

Query: 134 ---VRKLVSSGERPDGYTFSMILKA--------------STCCRSNVPLPRNLGRMVHAQ 176
              V  L   G   D   F   + A              S C           G  VHA 
Sbjct: 116 NAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKAS---RTGEQVHAL 172

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
           + K    +D  + TALVD Y K  +   A+ VFD M E+N++   S+I+ +   G V++A
Sbjct: 173 VTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEA 232

Query: 237 EEIFRKTVEKDIV---VYNAMIEGYSISIETARKALEVHCQLIK-NVFFEDVKLGSALVD 292
             +F + ++   V   V  A +      +   R+  +VH +++K + F ED+ L +ALVD
Sbjct: 233 LALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVD 292

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           MYAKCG+  +A+ VFD M  ++V + TSMI GY K+ N   A  +F  M    V+ N V 
Sbjct: 293 MYAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQM----VEKNVVA 348

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE-------QA 405
           +   ++   H    ++   +F  ++R+ S+ P    Y  +++      +L+         
Sbjct: 349 WNVLIATYAHNSEEEEALRLFVRLKRE-SVWPTHYTYGNVLNACANLANLQLGQQAHVHV 407

Query: 406 LKFVLEMPEKPNSDVW 421
           LK        P SDV+
Sbjct: 408 LKEGFRFDSGPESDVF 423



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 70/252 (27%), Positives = 114/252 (45%), Gaps = 34/252 (13%)

Query: 188 LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKD 247
           L   L+ +Y + G    AR VFD M  +N     +++S     G  +DA  +F    + D
Sbjct: 52  LLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPDPD 111

Query: 248 IVVYNAMI--------------------------EGYSI--------SIETARKALEVHC 273
              YNA++                            YS         S + +R   +VH 
Sbjct: 112 QCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHA 171

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
            + K+    DV +G+ALVDMYAKC + ++A++VFD M ++N+ +W S+I  Y +NG  ++
Sbjct: 172 LVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDE 231

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMV 393
           AL LF  M +    P+ VT    +SAC       +GR++   M +    +  M     +V
Sbjct: 232 ALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALV 291

Query: 394 DLLGRAGSLEQA 405
           D+  + G   +A
Sbjct: 292 DMYAKCGRTWEA 303



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 1/85 (1%)

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
           F  +  L + L+  YA+ G + DARRVFD M  +N F++ +++    + G  + AL LF 
Sbjct: 46  FAGETFLLNTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFG 105

Query: 340 MMQECCVQPNYVTFLGALSACGHAG 364
            + +   Q +Y   + AL+  G  G
Sbjct: 106 AIPD-PDQCSYNAVVAALAQHGRGG 129


>gi|359481919|ref|XP_003632692.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Vitis vinifera]
          Length = 1053

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 165/473 (34%), Positives = 280/473 (59%), Gaps = 25/473 (5%)

Query: 27  QTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKL 86
           Q    + Q YDS+   LT     +A++          G ++HAH+ KT  +P   +  +L
Sbjct: 471 QGLEVEFQGYDSV---LTECISQTAIRE---------GQRVHAHMIKTCYEPPVYLRTRL 518

Query: 87  LILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDG 146
           ++L+ KC  L  A ++ DE+P+R + ++  MI+GY + G   E+L L  +++ SG  P+ 
Sbjct: 519 IVLYNKCRCLGDARRVLDEMPERNVVSWTAMISGYSQRGYASEALHLFVEMLMSGTAPNE 578

Query: 147 YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR 206
           +TF+ +L   T C S+      LGR +H+ ++K   ++   + ++L+D Y K GK   AR
Sbjct: 579 FTFATVL---TSCTSSSGF--QLGRQIHSLVIKTSFESHIFVGSSLLDMYAKAGKICEAR 633

Query: 207 IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISI 262
            VFD + E++V+  T++ISG+   G  E+A ++FR+     +  + V Y +++   S  +
Sbjct: 634 RVFDGLPERDVVSCTAIISGYAQLGLDEEALDLFRRLQREGMRSNYVTYASVLTALS-GL 692

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
                  +VH  +++      V L ++L+DMY+KCG +  +RR+FD M ++ V +W +M+
Sbjct: 693 AALDHGRQVHSHVLRAKLPFYVVLQNSLIDMYSKCGSLTYSRRIFDSMPERTVISWNAML 752

Query: 323 DGYGKNGNPNQALELFCMM-QECCVQPNYVTFLGALSACGHAGLVDKGREIF-ESMERDY 380
            GY K+G   +A+ELF +M +E  V+P+ VTFL  LS C H G+ D+G EIF E + +  
Sbjct: 753 VGYSKHGLGREAVELFKLMKEENKVKPDSVTFLAVLSGCSHGGMEDRGLEIFYEMVNQKD 812

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIA 440
             +P++EHY C+VDL GRAG +E+A +F+ +MP +P + +W +LL +CR+H +V +    
Sbjct: 813 GFEPEIEHYGCVVDLFGRAGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHQNVHIGEFV 872

Query: 441 ANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           A  + ++ + +  G YV LSN  A+AG+WD V  +RE MK + V+K+ G SW+
Sbjct: 873 ARRLLEIESEN-AGNYVILSNLYASAGRWDDVRTVRELMKEKAVIKEPGRSWI 924


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  311 bits (798), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 178/492 (36%), Positives = 271/492 (55%), Gaps = 47/492 (9%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L A S  SAL           G ++H  + ++    + +I   L+ ++ KC     A ++
Sbjct: 149 LNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDARRV 208

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           FD +P+R + ++N +I  Y +NG V E+L L  +++++G  PD  T S ++ A     + 
Sbjct: 209 FDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSAC----AG 264

Query: 163 VPLPRNLGRMVHAQILKCDVKADD-VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
           +   R  GR VHA ++K D   DD VL  ALVD Y K G+T  AR +FD M  ++V+  T
Sbjct: 265 LAAERE-GRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSET 323

Query: 222 SMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS----------ISIETARKAL-- 269
           S+++G+     VEDA+ +F + VEK+++ +N +I  Y+          + ++  R ++  
Sbjct: 324 SILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWP 383

Query: 270 ----------------------EVHCQLIKNVF-FE-----DVKLGSALVDMYAKCGKID 301
                                 + H  ++K  F F+     DV +G++LVDMY K G ID
Sbjct: 384 THYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSID 443

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           D  +VF+ M  ++  +W +MI GY +NG    AL LF  M      P+ VT +G LSACG
Sbjct: 444 DGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACG 503

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
           H+GLVD+GR  F  M  D+ + P  +HY CMVDLLGRAG L++A + + +MP +P+S +W
Sbjct: 504 HSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLW 563

Query: 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
           A+LL +CRLH +VE+    A  +F+L+  +  G YV LSN  A  GKW  V  +R  MK 
Sbjct: 564 ASLLGACRLHKNVELGERTAGRLFELDPEN-SGPYVLLSNMYAEMGKWADVFRVRRSMKD 622

Query: 482 RGVLKDTGCSWV 493
           RGV K  GCSW+
Sbjct: 623 RGVSKQPGCSWI 634



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/433 (25%), Positives = 190/433 (43%), Gaps = 83/433 (19%)

Query: 68  HAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV 127
           H  + K+ V   T +   L+  + + G L+ A ++FD +P R   +YN +++ Y + G+ 
Sbjct: 40  HGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRP 99

Query: 128 EESLSL---------------VRKLVSSGERPDG------------------YTFSMILK 154
           +E+ +L               V  L   G    G                  Y+F+  L 
Sbjct: 100 DEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALS 159

Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV-LYTALVDSYVKGGKTSYARIVFDMML 213
           A   C +   L    G  VH  + +    ADDV + TALVD Y K  +   AR VFD M 
Sbjct: 160 A---CAAEKDL--RTGEQVHGLVARSP-HADDVHIGTALVDMYAKCERPVDARRVFDAMP 213

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK----DIVVYNAMIEGYSISIETARKAL 269
           E+NV+   S+I+ +   G V +A  +F + +      D V  ++++   +  +   R+  
Sbjct: 214 ERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACA-GLAAEREGR 272

Query: 270 EVHCQLIK-NVFFEDVKLGSALVDMYAKCGK----------------------------- 299
           +VH  ++K +   +D+ L +ALVDMYAKCG+                             
Sbjct: 273 QVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKS 332

Query: 300 --IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
             ++DA+ VF  M +KNV  W  +I  Y +NG   +A+ LF  ++   + P + T+   L
Sbjct: 333 ANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVL 392

Query: 358 SACGHAGLVDKGRE-----IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
           +ACG+  ++  G++     + E    D+  +  +     +VD+  + GS++   K    M
Sbjct: 393 NACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERM 452

Query: 413 PEKPNSDVWAALL 425
             + N   W A++
Sbjct: 453 AARDNVS-WNAMI 464



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 85/292 (29%), Positives = 130/292 (44%), Gaps = 38/292 (13%)

Query: 160 RSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVIC 219
           RS   LP    R  H  +LK  V  +  L   LV +Y + G+   AR VFD +  +N   
Sbjct: 28  RSAPSLPG--ARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFS 85

Query: 220 STSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMI------------------------ 255
             +++S +   G  ++A  +F    + D   YNA++                        
Sbjct: 86  YNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRFLAAMHAD 145

Query: 256 ----EGYS----ISIETARKAL----EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
                 YS    +S   A K L    +VH  + ++   +DV +G+ALVDMYAKC +  DA
Sbjct: 146 DFVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAKCERPVDA 205

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
           RRVFD M ++NV +W S+I  Y +NG   +AL LF  M      P+ VT    +SAC   
Sbjct: 206 RRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSVMSACAGL 265

Query: 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
               +GR++   M +   ++  M     +VD+  + G   +A      MP +
Sbjct: 266 AAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSR 317


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  308 bits (789), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 170/468 (36%), Positives = 273/468 (58%), Gaps = 18/468 (3%)

Query: 32  KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHL 91
           ++Q    + N +T   L +A    +NS    +G +IH+ + K G   +  +   L+ ++ 
Sbjct: 318 QMQREGVMPNKITYVILLNAC---VNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYS 374

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           +CG++K A  +FD++ ++ + ++  MI G  K+G   E+L++ +++  +G  P+  T++ 
Sbjct: 375 RCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTS 434

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           IL A   C S  P     GR +H Q+++  +  D  +   LV+ Y   G    AR VFD 
Sbjct: 435 ILNA---CSS--PAALEWGRRIHQQVVEAGLATDAHVGNTLVNMYSMCGSVKDARQVFDR 489

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK----DIVVYNAMIEG--YSISIETA 265
           M++++++   +MI G+ +    ++A ++F +  E+    D V Y  M+     S S+E A
Sbjct: 490 MIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWA 549

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
           R   E+H  + K  FF D  +G+ALV  YAKCG   DA  VF+ M ++NV +W ++I G 
Sbjct: 550 R---EIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMTKRNVISWNAIIGGS 606

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
            ++G    AL+LF  M+   V+P+ VTF+  LSAC HAGL+++GR  F SM +D+++ P 
Sbjct: 607 AQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSQDFAIIPT 666

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIF 445
           +EHY CMVDLLGRAG L++A   +  MP + N+ +W ALL +CR+H +V +A  AA    
Sbjct: 667 IEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSL 726

Query: 446 KLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           KL+  D    YVALS+  AAAG WDS  +LR+ M+ RGV K+ G SW+
Sbjct: 727 KLDL-DNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWI 773



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/395 (29%), Positives = 205/395 (51%), Gaps = 25/395 (6%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L A S P+AL+         +G  +H+ I   G + +T +   L+ ++ KCG+ K   Q+
Sbjct: 234 LNAFSSPAALK---------WGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQV 284

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           F++L  R L A+N MI G  + G  EE+  +  ++   G  P+  T+ ++L A   C ++
Sbjct: 285 FEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNA---CVNS 341

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
             L  + G+ +H+++ K    +D  +  AL+  Y + G    AR+VFD M+ K+VI  T+
Sbjct: 342 AAL--HWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTA 399

Query: 223 MISGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIEGYS--ISIETARKALEVHCQLI 276
           MI G    GF  +A    +E+ +  VE + V Y +++   S   ++E  R+   +H Q++
Sbjct: 400 MIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRR---IHQQVV 456

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           +     D  +G+ LV+MY+ CG + DAR+VFD M Q+++  + +MI GY  +    +AL+
Sbjct: 457 EAGLATDAHVGNTLVNMYSMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALK 516

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           LF  +QE  ++P+ VT++  L+AC ++G ++  REI  ++ R             +V   
Sbjct: 517 LFDRLQEEGLKPDKVTYINMLNACANSGSLEWAREI-HTLVRKGGFFSDTSVGNALVSTY 575

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
            + GS   A   V E   K N   W A++     H
Sbjct: 576 AKCGSFSDA-SIVFEKMTKRNVISWNAIIGGSAQH 609



 Score =  172 bits (436), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 97/338 (28%), Positives = 181/338 (53%), Gaps = 19/338 (5%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L++   P AL+         +G +IH    + G+  +  ++  +L ++ KCG+++ A ++
Sbjct: 133 LSSCKSPGALE---------WGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIEEAREV 183

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           FD++ ++++ ++   I GY   G+ E +  + +K+   G  P+  T+  +L A +     
Sbjct: 184 FDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSS---- 239

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
            P     G+ VH++IL    ++D  + TALV  Y K G     R VF+ ++ +++I   +
Sbjct: 240 -PAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNT 298

Query: 223 MISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKN 278
           MI G    G+ E+A E++    R+ V  + + Y  ++    ++        E+H ++ K 
Sbjct: 299 MIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNA-CVNSAALHWGKEIHSRVAKA 357

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
            F  D+ + +AL+ MY++CG I DAR VFD M +K+V +WT+MI G  K+G   +AL ++
Sbjct: 358 GFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTVY 417

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM 376
             MQ+  V+PN VT+   L+AC     ++ GR I + +
Sbjct: 418 QEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQV 455



 Score =  165 bits (418), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 113/428 (26%), Positives = 209/428 (48%), Gaps = 55/428 (12%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP--QRTLSAYNYMIAGY 121
           G ++H HI +    P+      L+ ++++CG+++ A Q++ +L   +RT+ ++N M+ GY
Sbjct: 42  GRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGY 101

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           ++ G +E++L L+R++   G  PD  T   I+   + C+S  P     GR +H Q ++  
Sbjct: 102 IQYGYIEKALKLLRQMQQHGLAPDRTT---IMSFLSSCKS--PGALEWGREIHFQAMQAG 156

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +  D  +   +++ Y K G    AR VFD M +K+V+  T  I G+   G  E A EIF+
Sbjct: 157 LLFDVKVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQ 216

Query: 242 KTVEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           K  ++ +V     Y +++  +S S    +    VH +++      D  +G+ALV MYAKC
Sbjct: 217 KMEQEGVVPNRITYISVLNAFS-SPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKC 275

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G   D R+VF+ +  +++  W +MI G  + G   +A E++  MQ   V PN +T++  L
Sbjct: 276 GSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILL 335

Query: 358 SACGHAGLVDKGREIFESMER------------------------------DYSMKPKME 387
           +AC ++  +  G+EI   + +                              D  ++  + 
Sbjct: 336 NACVNSAALHWGKEIHSRVAKAGFTSDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVI 395

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSC----------RLHDDV 434
            +  M+  L ++G   +AL    EM +   +PN   + ++L++C          R+H  V
Sbjct: 396 SWTAMIGGLAKSGFGAEALTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQV 455

Query: 435 EMANIAAN 442
             A +A +
Sbjct: 456 VEAGLATD 463



 Score =  111 bits (278), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 144/324 (44%), Gaps = 48/324 (14%)

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM--LEKNVICSTSMISGF 227
           GR VH  I++     D     AL++ Y++ G    AR V+  +  +E+ V    +M+ G+
Sbjct: 42  GRQVHQHIIQHRTVPDQYTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGY 101

Query: 228 MSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETA---RKALEVHCQLIKNVFFEDV 284
           +  G++E A ++ R+  +  +      I  +  S ++        E+H Q ++     DV
Sbjct: 102 IQYGYIEKALKLLRQMQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDV 161

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
           K+ + +++MYAKCG I++AR VFD M++K+V +WT  I GY   G    A E+F  M++ 
Sbjct: 162 KVANCILNMYAKCGSIEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQE 221

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQ 404
            V PN +T++  L+A      +  G+ +                                
Sbjct: 222 GVVPNRITYISVLNAFSSPAALKWGKAVHSR----------------------------- 252

Query: 405 ALKFVLEMPEKPNSDVWAALL---SSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSN 461
               +L    + ++ V  AL+   + C  + D         ++F+   N    A+  +  
Sbjct: 253 ----ILNAGHESDTAVGTALVKMYAKCGSYKD-------CRQVFEKLVNRDLIAWNTMIG 301

Query: 462 TLAAAGKWDSVTELREKMKLRGVL 485
            LA  G W+  +E+  +M+  GV+
Sbjct: 302 GLAEGGYWEEASEVYNQMQREGVM 325


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  306 bits (784), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 172/479 (35%), Positives = 280/479 (58%), Gaps = 25/479 (5%)

Query: 32  KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHL 91
           K+   D L N  +  S  SA    ++ +    G ++HA ++K+    +  +   L+ ++ 
Sbjct: 137 KMHREDFLLNEYSFGSALSACAGLMDLNM---GTQVHALVSKSRYSTDVYMGSALIDMYS 193

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           KCG++  A ++F  + +R L  +N +I  Y +NG   E+L +  +++ SG  PD  T + 
Sbjct: 194 KCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLAS 253

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD-VLYTALVDSYVKGGKTSYARIVFD 210
           ++ A   C S   L   L   +HA+++K +   DD VL  ALVD Y K  K + AR VFD
Sbjct: 254 VVSA---CASLCALKEGL--QIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFD 308

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE 270
            M  +NV+  TSM+SG+     V+ A  +F K  ++++V +NA+I GY+ + E   +AL 
Sbjct: 309 RMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGEN-EEALR 367

Query: 271 VHCQLIK------------NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTW 318
           +  +L+K            N+   D+ +G++L+DMY KCG I+D  RVF+ M++++  +W
Sbjct: 368 LF-RLLKRESIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSW 426

Query: 319 TSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER 378
            ++I GY +NG   +AL++F  M  C  +P++VT +G L AC HAGLV++GR  F SME 
Sbjct: 427 NAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSME- 485

Query: 379 DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMAN 438
           ++ + P  +HY CMVDLLGRAG L +A   +  MP  P++ VW +LL++C++H ++EM  
Sbjct: 486 EHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGK 545

Query: 439 IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTES 497
            AA ++ +++  +  G YV LSN  A  G+W  V  +R+ M+ +GV K  GCSW+  ES
Sbjct: 546 HAAEKLLEIDPWN-SGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVES 603



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 114/399 (28%), Positives = 190/399 (47%), Gaps = 59/399 (14%)

Query: 79  NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLV 138
           NT     L+ +  K G L  A ++F  +P+    ++N M++G+ ++ + EESL    K+ 
Sbjct: 80  NTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVKMH 139

Query: 139 SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVK 198
                 + Y+F   L A   C   + L  N+G  VHA + K     D  + +AL+D Y K
Sbjct: 140 REDFLLNEYSFGSALSA---CAGLMDL--NMGTQVHALVSKSRYSTDVYMGSALIDMYSK 194

Query: 199 GGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAM 254
            G  + A  VF  M+E+N++   S+I+ +   G   +A E+F +     +E D V   ++
Sbjct: 195 CGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASV 254

Query: 255 IEGYSISIETARKALEVHCQLIK-NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ-- 311
           +   + S+   ++ L++H +++K N F +D+ LG+ALVDMYAKC K+++ARRVFD M   
Sbjct: 255 VSACA-SLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIR 313

Query: 312 -----------------------------QKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
                                        Q+NV +W ++I GY +NG   +AL LF +++
Sbjct: 314 NVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLK 373

Query: 343 ECCVQPNYVTFLGALSA---CGHA--------GLVDKGREIFESM-ERD-YSMKPKMEHY 389
              + P + TF   L +    G++        G ++ G  +FE M ERD  S    +  Y
Sbjct: 374 RESIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGY 433

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
           A      G      Q  + +L   EKP+      +L +C
Sbjct: 434 A----QNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCAC 468



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 137/298 (45%), Gaps = 39/298 (13%)

Query: 144 PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTS 203
           P+   F+ +L   +C RS         R+VHA+IL      +  +   L+D Y K     
Sbjct: 13  PNSSPFAKLL--DSCLRSRSARGT---RLVHARILMTQFSMEIFIQNRLIDVYGKCDCLD 67

Query: 204 YARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS---- 259
            AR +FD M ++N     S+IS     GF+++A  +F    E D   +N+M+ G++    
Sbjct: 68  DARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDR 127

Query: 260 --------------------ISIETARKA----------LEVHCQLIKNVFFEDVKLGSA 289
                                S  +A  A           +VH  + K+ +  DV +GSA
Sbjct: 128 FEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSA 187

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349
           L+DMY+KCG +  A  VF  M ++N+ TW S+I  Y +NG  ++ALE+F  M +  ++P+
Sbjct: 188 LIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPD 247

Query: 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALK 407
            VT    +SAC     + +G +I   + +    +  +     +VD+  +   + +A +
Sbjct: 248 EVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARR 305


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  305 bits (781), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 166/453 (36%), Positives = 263/453 (58%), Gaps = 12/453 (2%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
            +  S L  + N +    G K+H  I + G++    +   L+ ++ KCG +  A  +FD 
Sbjct: 149 VTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVGTSLVGMYAKCGDISKARVIFDR 208

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           LP++ +  +  +IAGY + GQV+ +L L+  +  +   P+  TF+ IL+  T      P 
Sbjct: 209 LPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCT-----TPA 263

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
               G+ VH  I++     +  +  +L+  Y K G    AR +F  +  ++V+  T+M++
Sbjct: 264 ALEHGKKVHRYIIQSGYGRELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVT 323

Query: 226 GFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFF 281
           G+   GF ++A  +FR+     ++ D + + +++   S S    ++   +H QL+   + 
Sbjct: 324 GYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCS-SPAFLQEGKRIHQQLVHAGYN 382

Query: 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY-GKNGNPNQALELFCM 340
            DV L SALV MYAKCG +DDA  VF+ M ++NV  WT++I G   ++G   +ALE F  
Sbjct: 383 LDVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQ 442

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           M++  ++P+ VTF   LSAC H GLV++GR+ F SM  DY +KP +EHY+C VDLLGRAG
Sbjct: 443 MKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAG 502

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
            LE+A   +L MP  P   VW ALLS+CR+H DVE    AA  + KL+ +D  GAYVALS
Sbjct: 503 HLEEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDD-DGAYVALS 561

Query: 461 NTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           +  AAAG+++   ++R+ M+ R V+K+ G SW+
Sbjct: 562 SIYAAAGRYEDAEKVRQVMEKRDVVKEPGQSWI 594



 Score =  184 bits (466), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 104/372 (27%), Positives = 209/372 (56%), Gaps = 18/372 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA I K+G++PN  +   LL ++ KCG+L  A ++FD +  R + ++  MI  ++ 
Sbjct: 66  GREVHAAILKSGIQPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVA 125

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
             +  E+      +  +G +PD  TF  +L A T      P    LG+ VH +I++  ++
Sbjct: 126 GNKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTN-----PELLQLGQKVHMEIVEAGLE 180

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +  + T+LV  Y K G  S AR++FD + EKNV+  T +I+G+  QG V+ A E+    
Sbjct: 181 LEPRVGTSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETM 240

Query: 244 VEKDI----VVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
            + ++    + + ++++G +   ++E  +K   VH  +I++ +  ++ + ++L+ MY KC
Sbjct: 241 QQAEVAPNKITFASILQGCTTPAALEHGKK---VHRYIIQSGYGRELWVVNSLITMYCKC 297

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G +++AR++F  +  ++V TWT+M+ GY + G  ++A+ LF  MQ+  ++P+ +TF   L
Sbjct: 298 GGLEEARKLFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVL 357

Query: 358 SACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           ++C     + +G+ I + +    Y++   ++  + +V +  + GS++ A     +M E+ 
Sbjct: 358 TSCSSPAFLQEGKRIHQQLVHAGYNLDVYLQ--SALVSMYAKCGSMDDASLVFNQMSER- 414

Query: 417 NSDVWAALLSSC 428
           N   W A+++ C
Sbjct: 415 NVVAWTAIITGC 426



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 116/235 (49%), Gaps = 17/235 (7%)

Query: 224 ISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY---SISIETARKALEVHCQLIKNVF 280
           +S     G +++A  I    + +   VY+ +  G       + +  +  EVH  ++K+  
Sbjct: 19  VSVLCKTGRLKEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGI 78

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             +  L + L+ MYAKCG + DARRVFD ++ +N+ +WT+MI+ +       +A + +  
Sbjct: 79  QPNRYLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYET 138

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREI-FESMERDYSMKPKMEHYACMVDLLGRA 399
           M+    +P+ VTF+  L+A  +  L+  G+++  E +E    ++P++     +V +  + 
Sbjct: 139 MKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG--TSLVGMYAKC 196

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLS----------SCRLHDDVEMANIAANEI 444
           G + +A      +PEK N   W  L++          +  L + ++ A +A N+I
Sbjct: 197 GDISKARVIFDRLPEK-NVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKI 250


>gi|449525261|ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  305 bits (781), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 193/539 (35%), Positives = 292/539 (54%), Gaps = 55/539 (10%)

Query: 1   MPNLSRIRSSVFSSTHNRHY-TLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSD 59
           M   SR  S+V   +H ++  T   PN    P+LQ+   L        L   L   ++  
Sbjct: 1   MIGFSRNLSTVSKLSHLQNLQTRGSPNFIPFPQLQHQRKL--------LEWRLMSILHDC 52

Query: 60  TPFYGLK-IHAHITKTGVKPNTNISIKLLILHLKCGAL--KYAGQMFDELPQRTLSAYNY 116
           T F  +K +HAHI + G+   + +  KL+ +  K       Y   +F ++       +  
Sbjct: 53  TLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTA 112

Query: 117 MIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
           MI GY   G + ES +   ++   G  P  +TFS + KA         L  +LG+ VHAQ
Sbjct: 113 MIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKAC-----GAALNMDLGKQVHAQ 167

Query: 177 -ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
            IL     +D  +  +++D YVK G    AR VFD M E++V+  T +I  +   G +E 
Sbjct: 168 TILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMES 227

Query: 236 AEEIFRKTVEKDIVVYNAMIEGYS-----------------ISIET------------AR 266
           A  +F     KD+V + AM+ GY+                 + +ET            A+
Sbjct: 228 ASGLFDDLPSKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQ 287

Query: 267 KALEVHCQLIKNVFFE-------DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWT 319
                H   I+++          +V +GSAL+DMY+KCG  D+A +VF+ M+++NVF+++
Sbjct: 288 LGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYS 347

Query: 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD 379
           SMI GY  +G  + AL+LF  M +  ++PN VTF+G LSAC HAGLV++GR++F  ME+ 
Sbjct: 348 SMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKF 407

Query: 380 YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANI 439
           + + P  +HYACMVDLLGRAG LE+AL  V  MP +PN  VW ALL +CR+H + ++A I
Sbjct: 408 FGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQI 467

Query: 440 AANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498
           AANE+FKL  N   G Y+ LSN  A+AG+W+ V++LR+ ++ +G  K+ GCSW   ++G
Sbjct: 468 AANELFKLEPNG-IGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNG 525


>gi|449457516|ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  304 bits (779), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 193/539 (35%), Positives = 292/539 (54%), Gaps = 55/539 (10%)

Query: 1   MPNLSRIRSSVFSSTHNRHY-TLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSD 59
           M   SR  S+V   +H ++  T   PN    P+LQ+   L        L   L   ++  
Sbjct: 1   MIGFSRNLSTVSKLSHLQNLQTRGSPNFIPFPQLQHQRKL--------LEWRLMSILHDC 52

Query: 60  TPFYGLK-IHAHITKTGVKPNTNISIKLLILHLKCGAL--KYAGQMFDELPQRTLSAYNY 116
           T F  +K +HAHI + G+   + +  KL+ +  K       Y   +F ++       +  
Sbjct: 53  TLFSQIKQVHAHIIRNGLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTA 112

Query: 117 MIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
           MI GY   G + ES +   ++   G  P  +TFS + KA         L  +LG+ VHAQ
Sbjct: 113 MIRGYALQGLLSESTNFYTRMRRDGVGPVSFTFSALFKAC-----GAALNMDLGKQVHAQ 167

Query: 177 -ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
            IL     +D  +  +++D YVK G    AR VFD M E++V+  T +I  +   G +E 
Sbjct: 168 TILIGGFASDLYVGNSMIDLYVKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMES 227

Query: 236 AEEIFRKTVEKDIVVYNAMIEGYS-----------------ISIET------------AR 266
           A  +F     KD+V + AM+ GY+                 + +ET            A+
Sbjct: 228 ASGLFDDLPLKDMVAWTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQ 287

Query: 267 KALEVHCQLIKNVFFE-------DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWT 319
                H   I+++          +V +GSAL+DMY+KCG  D+A +VF+ M+++NVF+++
Sbjct: 288 LGAVKHANWIRDIAERSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYS 347

Query: 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD 379
           SMI GY  +G  + AL+LF  M +  ++PN VTF+G LSAC HAGLV++GR++F  ME+ 
Sbjct: 348 SMILGYAMHGRAHSALQLFHDMLKTEIRPNKVTFIGILSACSHAGLVEQGRQLFAKMEKF 407

Query: 380 YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANI 439
           + + P  +HYACMVDLLGRAG LE+AL  V  MP +PN  VW ALL +CR+H + ++A I
Sbjct: 408 FGVAPSPDHYACMVDLLGRAGCLEEALDLVKTMPMEPNGGVWGALLGACRIHGNPDIAQI 467

Query: 440 AANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498
           AANE+FKL  N   G Y+ LSN  A+AG+W+ V++LR+ ++ +G  K+ GCSW   ++G
Sbjct: 468 AANELFKLEPNG-IGNYILLSNIYASAGRWEEVSKLRKVIREKGFKKNPGCSWFEGKNG 525


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  304 bits (778), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 165/468 (35%), Positives = 271/468 (57%), Gaps = 18/468 (3%)

Query: 32  KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHL 91
           ++Q    + N +T   L +A    +N     +G +IH+ + K G   + ++   L+ ++ 
Sbjct: 436 QMQREGMMPNKITYVILLNAC---VNPTALHWGREIHSRVVKDGFMFDISVQNALISMYA 492

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           +CG++K A  +F+++ ++ + ++  MI G  K+G   E+L++ + +  +G +P+  T++ 
Sbjct: 493 RCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTS 552

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           IL A   C S  P   + GR +H Q+++  +  D  +   LV+ Y   G    AR VFD 
Sbjct: 553 ILNA---CSS--PAALDWGRRIHQQVIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDR 607

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK----DIVVYNAMIEG--YSISIETA 265
           M +++++   +MI G+ +    ++A ++F +  E+    D V Y  M+     S S+E A
Sbjct: 608 MTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWA 667

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
           +   E+H  ++K+ +  D  LG+ALV  YAKCG   DA  VFD M ++NV +W ++I G 
Sbjct: 668 K---EIHSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDKMMKRNVISWNAIIGGC 724

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
            ++G     L+LF  M+   ++P+ VTF+  LSAC HAGL+++GR  F SM RD+ + P 
Sbjct: 725 AQHGRGQDVLQLFERMKMEGIKPDIVTFVSLLSACSHAGLLEEGRRYFCSMSRDFGITPT 784

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIF 445
           +EHY CMVDLLGRAG L++    +  MP + N+ +W ALL +CR+H +V +A  AA    
Sbjct: 785 IEHYGCMVDLLGRAGQLDEVEALIKTMPFQANTRIWGALLGACRIHGNVPVAERAAESSL 844

Query: 446 KLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           KL+  D    YVALS+  AAAG WDS  +LR+ M+ RGV K+ G SW+
Sbjct: 845 KLDP-DNAAVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSWI 891



 Score =  181 bits (459), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 114/397 (28%), Positives = 204/397 (51%), Gaps = 25/397 (6%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           N L A S P+AL+         +G  +H+HI   G + +  +   L+ ++ KCG+ K   
Sbjct: 350 NVLNAFSGPAALK---------WGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCR 400

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           Q+F++L  R L A+N MI G  + G  EE+  +  ++   G  P+  T+ ++L A  C  
Sbjct: 401 QVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNA--CVN 458

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
              P   + GR +H++++K     D  +  AL+  Y + G    AR++F+ M+ K++I  
Sbjct: 459 ---PTALHWGREIHSRVVKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISW 515

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYS--ISIETARKALEVHCQ 274
           T+MI G    G   +A  +F+   +  +    V Y +++   S   +++  R+   +H Q
Sbjct: 516 TAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRR---IHQQ 572

Query: 275 LIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQA 334
           +I+     D  + + LV+MY+ CG + DAR+VFD M Q+++  + +MI GY  +    +A
Sbjct: 573 VIEAGLATDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEA 632

Query: 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394
           L+LF  +QE  ++P+ VT++  L+AC ++G ++  +EI   + +D  +       A +V 
Sbjct: 633 LKLFDRLQEEGLKPDKVTYINMLNACANSGSLEWAKEIHSLVLKDGYLSDTSLGNA-LVS 691

Query: 395 LLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
              + GS   AL  V +   K N   W A++  C  H
Sbjct: 692 TYAKCGSFSDAL-LVFDKMMKRNVISWNAIIGGCAQH 727



 Score =  157 bits (396), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 193/370 (52%), Gaps = 18/370 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL--PQRTLSAYNYMIAGY 121
           G ++H HI +     +      L+ ++++CG+++ A Q++++L   +RT+ ++N M+ GY
Sbjct: 160 GREVHEHIIQHCTVLDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGY 219

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           ++ G +EE+L L+R++   G    G   +M L +S  C+S  P     GR +H + +K  
Sbjct: 220 VQYGYIEEALKLLREMQQHG-LALGRATTMRLLSS--CKS--PSALECGREIHVEAMKAR 274

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +  D  +   +++ Y K G    AR VFD M  K+V+  T +I G+   G  E A EIF+
Sbjct: 275 LLFDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQ 334

Query: 242 KTVEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           K  ++ +V     Y  ++  +S      +    VH  ++      D+ +G+ALV MYAKC
Sbjct: 335 KMQQEGVVPNRITYINVLNAFS-GPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKC 393

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G   D R+VF+ +  +++  W +MI G  + GN  +A E++  MQ   + PN +T++  L
Sbjct: 394 GSYKDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILL 453

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           +AC +   +  GREI   + +D  M       A ++ +  R GS++ A     +M  K  
Sbjct: 454 NACVNPTALHWGREIHSRVVKDGFMFDISVQNA-LISMYARCGSIKDARLLFNKMVRK-- 510

Query: 418 SDV--WAALL 425
            D+  W A++
Sbjct: 511 -DIISWTAMI 519



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 157/345 (45%), Gaps = 55/345 (15%)

Query: 128 EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV 187
           + ++ +V+ L   G R +   +  +LK     +  V      GR VH  I++     D  
Sbjct: 123 DRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVA-----GREVHEHIIQHCTVLDQY 177

Query: 188 LYTALVDSYVKGGKTSYARIVFDMM--LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
              AL++ Y++ G    AR V++ +   E+ V    +M+ G++  G++E+A ++ R+  +
Sbjct: 178 TVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQ 237

Query: 246 KDIVVYNAMIEGYSISIETARK---ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
             + +  A       S ++        E+H + +K     DV + + +++MYAKCG I +
Sbjct: 238 HGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCGSIHE 297

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG- 361
           AR VFD M+ K+V +WT +I GY   G+   A E+F  MQ+  V PN +T++  L+A   
Sbjct: 298 AREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNAFSG 357

Query: 362 ----------HAGLVDKG------------------------REIFESM-ERDYSMKPKM 386
                     H+ +++ G                        R++FE +  RD      +
Sbjct: 358 PAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRD------L 411

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPEK---PNSDVWAALLSSC 428
             +  M+  L   G+ E+A +   +M  +   PN   +  LL++C
Sbjct: 412 IAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNAC 456


>gi|414591101|tpg|DAA41672.1| TPA: hypothetical protein ZEAMMB73_535355 [Zea mays]
          Length = 502

 Score =  303 bits (777), Expect = 9e-80,   Method: Compositional matrix adjust.
 Identities = 168/462 (36%), Positives = 271/462 (58%), Gaps = 22/462 (4%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
            P ++  L + L+    S     G ++HA     G  P+T +   L++L+ +CGAL  A 
Sbjct: 2   TPPSSGRLSALLRRCAASGALSPGAQLHAQALVGGRLPDTTLDTDLVLLYSRCGALHRAR 61

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           ++FD +P  ++ AYN ++A    +  V+    LV +LV+SG RPD Y+   +L+A  C  
Sbjct: 62  EVFDGMPSPSMHAYNVLLAASPPDAAVK----LVSRLVASGLRPDRYSVPAVLRA--CAE 115

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           S   L   LG ++H   ++  + A+ V+  AL+D Y K G    A  VFD M E++ +  
Sbjct: 116 SRDAL---LGSVLHGFAVRLGLLANVVVSGALLDMYAKTGTLGDAGRVFDEMPERDAVAW 172

Query: 221 TSMISGFMSQGFVEDAEEIFRKT------VEKDIVVYNAMIEGYSISIETAR--KALEVH 272
             M++G+   G  E+  E+FRK       + +D+    +++   ++  +  +  K  E+H
Sbjct: 173 NCMVTGYARAGRSEETLELFRKAQIESAGMARDLRAVPSVL---NVCADEGQLMKGREIH 229

Query: 273 CQLIKNVFFE-DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
            ++ + +    D  +G+AL+DMY KCG++D A+ VF  M++KNV +W+S+I  YG +G  
Sbjct: 230 GRMARCLASSSDTVVGNALIDMYGKCGQVDGAQAVFASMEEKNVVSWSSLISCYGVHGMG 289

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC 391
            +AL ++  M    V+PN VTF+  LS+C H+GLV  GR IFESM + ++++P  +HYAC
Sbjct: 290 KEALRVYEEMVSVGVKPNCVTFVSILSSCSHSGLVSDGRRIFESMRKVHAVEPTADHYAC 349

Query: 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451
           MVDLLGRAG++E+A+  V EMP +P + +W ALLS+C +H++V++  +AA  +F+L   D
Sbjct: 350 MVDLLGRAGAIEEAVGLVNEMPMEPGASLWGALLSACAIHNNVDVGEVAAYRLFELE-ED 408

Query: 452 RPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
               YV L     A G+ DSV  LR +M+  G++K  GCSWV
Sbjct: 409 NASNYVTLCGIYDAIGRSDSVAGLRSRMRELGMVKTPGCSWV 450


>gi|224140095|ref|XP_002323422.1| predicted protein [Populus trichocarpa]
 gi|222868052|gb|EEF05183.1| predicted protein [Populus trichocarpa]
          Length = 574

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 251/435 (57%), Gaps = 9/435 (2%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++HA +T TG+  +  ++ KLL +  K   L  A  +F+++ +R   +++ MI G++KNG
Sbjct: 21  QVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKNG 80

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             E      R+L+ +G +PD ++   ++KA   CR  + L   +GR++H+ +LK  +  D
Sbjct: 81  DYERCFQTFRELIRAGSKPDNFSLPFVIKA---CRDTMGLI--MGRLIHSTVLKNGLHLD 135

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
           + + + LVD Y K G    A+ +FD M +K+++  T MI+G+   G   ++  +F +   
Sbjct: 136 NFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMRR 195

Query: 246 KDIV---VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
              V   V    I      +    KA  VH  +    +  DV+LG+A++DMYAKCG ID 
Sbjct: 196 DGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDS 255

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           +R +FD M+QKNV +W++MI  YG +G   +ALELF MM    + PN +TF+  L AC H
Sbjct: 256 SREIFDRMEQKNVISWSAMIGAYGYHGQGREALELFHMMLNSGIIPNRITFISLLYACSH 315

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
           AGLVD G ++F  M   Y ++P ++HY CMVDLLGRAG L+QAL+ +  M  + +  +W 
Sbjct: 316 AGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENMEVEKDEGIWC 375

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
           A L +CR+H  V++A  AA  +  L   + PG Y+ LSN  A AG+W  V ++R  M  R
Sbjct: 376 AFLGACRIHRQVDLAEKAAKLLLSLQTQN-PGHYILLSNIYANAGRWKDVAKIRNLMAKR 434

Query: 483 GVLKDTGCSWVGTES 497
            + K  G +W+  ++
Sbjct: 435 RLKKIPGYTWIEVDN 449



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/270 (27%), Positives = 138/270 (51%), Gaps = 17/270 (6%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           + VHAQ+    +  D ++   L+    K      A ++F+ M E++ +  + MI GF+  
Sbjct: 20  KQVHAQVTTTGIIHDLIVANKLLYMCAKHKDLVTAHLLFNKMEERDPVSWSVMIGGFVKN 79

Query: 231 GFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS--IETARKALE------VHCQLIKNVFFE 282
           G  E   + FR+ +        +  + +S+   I+  R  +       +H  ++KN    
Sbjct: 80  GDYERCFQTFRELIRA-----GSKPDNFSLPFVIKACRDTMGLIMGRLIHSTVLKNGLHL 134

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           D  + S LVDMYAKCG ID+A+++FD M +K++ T T MI GY + G PN++  LF  M+
Sbjct: 135 DNFVCSTLVDMYAKCGMIDNAKQLFDRMPKKDLVTRTVMIAGYAECGKPNESWVLFDQMR 194

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVDLLGRAGS 401
                P+ V  +  ++AC   G ++K R + + +  R YS+   +E    M+D+  + GS
Sbjct: 195 RDGFVPDKVAMVTIVNACAKLGAMNKARLVHDYVCARRYSL--DVELGTAMIDMYAKCGS 252

Query: 402 LEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           ++ + + + +  E+ N   W+A++ +   H
Sbjct: 253 IDSS-REIFDRMEQKNVISWSAMIGAYGYH 281



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/367 (24%), Positives = 155/367 (42%), Gaps = 47/367 (12%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           SLP  ++   ++     G  IH+ + K G+  +  +   L+ ++ KCG +  A Q+FD +
Sbjct: 103 SLPFVIKACRDTMGLIMGRLIHSTVLKNGLHLDNFVCSTLVDMYAKCGMIDNAKQLFDRM 162

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P++ L     MIAGY + G+  ES  L  ++   G  PD    +M+   + C +      
Sbjct: 163 PKKDLVTRTVMIAGYAECGKPNESWVLFDQMRRDGFVPD--KVAMVTIVNACAKLG---A 217

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
            N  R+VH  +       D  L TA++D Y K G    +R +FD M +KNVI  ++MI  
Sbjct: 218 MNKARLVHDYVCARRYSLDVELGTAMIDMYAKCGSIDSSREIFDRMEQKNVISWSAMIGA 277

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
           +   G                                  R+ALE+   ++ +    +   
Sbjct: 278 YGYHG--------------------------------QGREALELFHMMLNSGIIPNRIT 305

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQ-----QKNVFTWTSMIDGYGKNGNPNQALELFCMM 341
             +L+   +  G +DD  ++F  M      + +V  +T M+D  G+ G  +QAL L   M
Sbjct: 306 FISLLYACSHAGLVDDGLQLFSLMSVSYGVRPDVKHYTCMVDLLGRAGRLDQALRLIENM 365

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGS 401
           +    +  +  FLGA        L +K  ++  S++   +  P   HY  + ++   AG 
Sbjct: 366 EVEKDEGIWCAFLGACRIHRQVDLAEKAAKLLLSLQ---TQNPG--HYILLSNIYANAGR 420

Query: 402 LEQALKF 408
            +   K 
Sbjct: 421 WKDVAKI 427


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  303 bits (775), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 161/471 (34%), Positives = 264/471 (56%), Gaps = 47/471 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH+ I K+    +  I   L+ ++ KCG +  A Q+FDE+  R + ++N +I  Y +
Sbjct: 171 GVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQ 230

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD-V 182
           NG   E+L + + ++ S   PD  T + ++ A   C S   +   +G+ VHA+++K D +
Sbjct: 231 NGPAVEALKVFQVMLESWVEPDEVTLASVISA---CASLSAI--KVGQEVHARVVKMDKL 285

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           + D +L  A VD Y K  +   AR +FD M  +NVI  TSM+SG+      + A  +F K
Sbjct: 286 RNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTKAARLMFTK 345

Query: 243 TVEKDIVVYNAMIEGYSISIETARK----------------------------------A 268
             E+++V +NA+I GY+ + E                                       
Sbjct: 346 MAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACADLADLHLG 405

Query: 269 LEVHCQLIKNVF------FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
           ++ H  ++K+ F       +D+ +G++L+DMY KCG +++   VF  M +++  +W +MI
Sbjct: 406 MQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMI 465

Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382
            G+ +NG  N+ALELF  M +   +P+++T +G LSACGHAG V++GR  F SM RD+ +
Sbjct: 466 IGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGV 525

Query: 383 KPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAAN 442
            P  +HY CMVDLLGRAG LE+A   + EMP +P+S +W +LL++C++H ++ +    A 
Sbjct: 526 APLRDHYTCMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAACKVHRNITLGKYVAE 585

Query: 443 EIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           ++F++  ++  G YV LSN  A  GKW     +R+ M+  GV K  GCSW+
Sbjct: 586 KLFEVETSN-SGPYVLLSNMYAELGKWGDAMNVRKLMRKEGVTKQPGCSWI 635



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 105/360 (29%), Positives = 169/360 (46%), Gaps = 69/360 (19%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +HA + K+G      I  +L+  + KCG+L+   Q+FD++PQR +  +N ++ G  K G 
Sbjct: 42  VHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKLGF 101

Query: 127 VEESLSLVR-----------KLVSSGERPDG-----YTFSMILKA-------------ST 157
           ++E+ SL R            +VS   + D      Y F+M+ K              S 
Sbjct: 102 LDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGLSA 161

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
           C   N     N G  +H+ I K    +D  + +ALVD Y K G  + A+ VFD M ++NV
Sbjct: 162 CSGLN---DMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNV 218

Query: 218 ICSTSMISGFMSQGFVEDAEEIFR----KTVEKDIVVYNAMIEGYSISIETARKALEVHC 273
           +   S+I+ +   G   +A ++F+      VE D V   ++I   + S+   +   EVH 
Sbjct: 219 VSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACA-SLSAIKVGQEVHA 277

Query: 274 QLIK-NVFFEDVKLGSALVDMYAKCGKIDDARRVFD------------------------ 308
           +++K +    D+ L +A VDMYAKC +I +AR +FD                        
Sbjct: 278 RVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMVSGYAMAASTK 337

Query: 309 -------HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
                   M ++NV +W ++I GY +NG   +AL LFC+++   V P + TF   L AC 
Sbjct: 338 AARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYTFANILKACA 397



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 140/278 (50%), Gaps = 36/278 (12%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           R VHA ++K     +  +   L+D+Y K G     R +FD M ++NV    S+++G    
Sbjct: 40  RCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLFDKMPQRNVFTWNSVVTGLTKL 99

Query: 231 GFVEDAEEIFRKTVEKDIVVYNAMIEGYS------------------------------- 259
           GF+++A+ +FR   E+D   +N+M+ G++                               
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFAMMHKEGFVLNEYTFASGL 159

Query: 260 ---ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF 316
                +    + +++H  + K+    DV +GSALVDMY+KCG ++DA++VFD M  +NV 
Sbjct: 160 SACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCGNVNDAQQVFDEMGDRNVV 219

Query: 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM 376
           +W S+I  Y +NG   +AL++F +M E  V+P+ VT    +SAC     +  G+E+   +
Sbjct: 220 SWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVISACASLSAIKVGQEVHARV 279

Query: 377 ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE-MP 413
            +   ++  +      VD+  +   +++A +F+ + MP
Sbjct: 280 VKMDKLRNDIILSNAFVDMYAKCSRIKEA-RFIFDSMP 316


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  301 bits (772), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 164/465 (35%), Positives = 266/465 (57%), Gaps = 45/465 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH+HI++ G++ +  ++  L+ ++ KC  ++ A + FD + +R + +++ MIAGY +
Sbjct: 299 GRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYAQ 358

Query: 124 NG-----QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
           +G      ++E   L+ ++   G  P+  TF  ILKA   C  +  L +  GR +HA+I 
Sbjct: 359 SGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKA---CSVHGALEQ--GRQIHAEIS 413

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
           K   ++D  L TA+ + Y K G    A  VF  M  KNV+   S+++ ++  G +  AE+
Sbjct: 414 KVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEK 473

Query: 239 IFRKTVEKDIVVYNAMIEGYSISIETAR------------------------------KA 268
           +F +   +++V +N MI GY+ S + A+                               A
Sbjct: 474 VFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSA 533

Query: 269 LE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
           LE    VH + +K     D  + ++L+ MY+KCG++ +AR VFD +  ++   W +M+ G
Sbjct: 534 LERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVAWNAMLAG 593

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP 384
           YG++G   +A++LF  M +  V PN +TF   +SACG AGLV +GREIF  M+ D+ MKP
Sbjct: 594 YGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQEDFRMKP 653

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
             +HY CMVDLLGRAG L++A +F+  MP +P+  VW ALL +C+ HD+V++A  AA+ I
Sbjct: 654 GKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLAEWAAHHI 713

Query: 445 FKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTG 489
            +L  ++    YV LSN  A AG+WD  T++R+ M  +G+ KD G
Sbjct: 714 LRLEPSN-ASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRG 757



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 110/438 (25%), Positives = 204/438 (46%), Gaps = 31/438 (7%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H  + + G+  +  +   L+  + K G +    Q+F  +  R +  ++ MIA Y  
Sbjct: 97  GKMVHKQLDELGLAIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAG 156

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N    ++     ++  +   P+  TF  ILKA   C +   L +   R +H  +    ++
Sbjct: 157 NNHPAKAFDTFERMKDANIEPNRITFLSILKA---CNNYSMLEK--AREIHTVVKASGME 211

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  + TAL+  Y K G+ S A  +F  M E+NV+  T++I        + +A E++ K 
Sbjct: 212 TDVAVATALITMYSKCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKM 271

Query: 244 VEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           ++  I    V + +++   + + E   +   +H  + +     DV + +AL+ MY KC  
Sbjct: 272 LQAGISPNAVTFVSLLNSCN-TPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNC 330

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNG-----NPNQALELFCMMQECCVQPNYVTFL 354
           I DAR  FD M +++V +W++MI GY ++G     + ++  +L   M+   V PN VTF+
Sbjct: 331 IQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFM 390

Query: 355 GALSACGHAGLVDKGREIFESM-----ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFV 409
             L AC   G +++GR+I   +     E D S++        + ++  + GS+ +A +  
Sbjct: 391 SILKACSVHGALEQGRQIHAEISKVGFESDRSLQ------TAIFNMYAKCGSIYEAEQVF 444

Query: 410 LEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKW 469
            +M E  N   WA+LL+      D+     +A ++F   +     ++  +    A +G  
Sbjct: 445 SKM-ENKNVVAWASLLTMYIKCGDL----TSAEKVFSEMSTRNVVSWNLMIAGYAQSGDI 499

Query: 470 DSVTELREKMKLRGVLKD 487
             V EL   MK+ G   D
Sbjct: 500 AKVFELLSSMKVEGFQPD 517



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 183/408 (44%), Gaps = 54/408 (13%)

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           K G+++E++ L+  +   G   +  T+  I++     R         G+MVH Q+ +  +
Sbjct: 55  KAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFED-----GKMVHKQLDELGL 109

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             D  L  +L++ Y K G  +    VF  M  ++V+  +SMI+ +        A + F +
Sbjct: 110 AIDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFER 169

Query: 243 ----TVEKDIVVYNAMIEG---YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
                +E + + + ++++    YS+ +E AR   E+H  +  +    DV + +AL+ MY+
Sbjct: 170 MKDANIEPNRITFLSILKACNNYSM-LEKAR---EIHTVVKASGMETDVAVATALITMYS 225

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KCG+I  A  +F  M+++NV +WT++I    ++   N+A EL+  M +  + PN VTF+ 
Sbjct: 226 KCGEISLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVS 285

Query: 356 ALSACGHAGLVDKGREIFESM-ER-----------------------------DYSMKPK 385
            L++C     +++GR I   + ER                             D   K  
Sbjct: 286 LLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRD 345

Query: 386 MEHYACMVDLLGRAG-----SLEQALKFVLEMPEK---PNSDVWAALLSSCRLHDDVEMA 437
           +  ++ M+    ++G     SL++  + +  M  +   PN   + ++L +C +H  +E  
Sbjct: 346 VISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQG 405

Query: 438 NIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485
                EI K+          A+ N  A  G      ++  KM+ + V+
Sbjct: 406 RQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVV 453


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 160/477 (33%), Positives = 270/477 (56%), Gaps = 47/477 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH+ + ++    +  +   L+ ++ KCG ++YA  +FDE+  R+  ++N +I  Y +
Sbjct: 170 GSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQ 229

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD-V 182
           NG V+E+L +  +++  G  PD  T + ++ A   C +   +    G+ +HA+++KCD  
Sbjct: 230 NGPVDEALKIFVEMIKCGVEPDEVTLASVVSA---CATISAIKE--GQQIHARVVKCDEF 284

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           + D +L  AL+D Y K  + + ARI+FDMM  ++V+  TSM+SG+     V+ A  +F  
Sbjct: 285 RNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSN 344

Query: 243 TVEKDIVVYNAMIEGYSISIETARKAL--------------------------------- 269
            + KD++ +NA+I G + + E     +                                 
Sbjct: 345 MMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLG 404

Query: 270 -EVHCQLIKNVF-FE-----DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
            + H  ++K+ F F+     DV +G++L+DMY KCG +++  RVF HM +K+  +W +MI
Sbjct: 405 RQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMI 464

Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382
            GY +NG  N+ALE+FC M E    P++VT +G L AC HAGL+D+GR  F SM   + +
Sbjct: 465 VGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGL 524

Query: 383 KPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAAN 442
            P  +HY CMVDLLGRAG LE+A   + EM  +P++ VW +LL++C++H ++++      
Sbjct: 525 MPLKDHYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRNIQLGEYVVK 584

Query: 443 EIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           ++ +++  +  G YV LSN  A    W +V  +R+ M+ RGV+K  GCSW+  +  L
Sbjct: 585 KLLEVDP-ENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPGCSWIEIQGEL 640



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 109/432 (25%), Positives = 200/432 (46%), Gaps = 79/432 (18%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD--------------------- 104
           ++HA I K+     T I  +L+ ++ KCG +  A ++FD                     
Sbjct: 40  RVHACIIKSPFASETFIQNRLIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSG 99

Query: 105 ----------ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
                     ++PQ    ++N MI+G+ ++G+ +E+L    ++   G   + Y+F   L 
Sbjct: 100 FLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALS 159

Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE 214
           A   C     L   LG  +H+ + + +  +D  + +ALVD Y K G+  YA+ VFD M  
Sbjct: 160 A---CAGLQDLK--LGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVEYAQSVFDEMTV 214

Query: 215 KNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALE 270
           ++ +   S+I+ +   G V++A +IF    +  VE D V   +++   + +I   ++  +
Sbjct: 215 RSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACA-TISAIKEGQQ 273

Query: 271 VHCQLIK-NVFFEDVKLGSALVDMYAKCGKIDDARRVFD--------------------- 308
           +H +++K + F  D+ LG+AL+DMYAKC +I++AR +FD                     
Sbjct: 274 IHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKAS 333

Query: 309 ----------HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
                     +M  K+V TW ++I G  +NG   +AL LF +++   V P + TF   L+
Sbjct: 334 KVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLN 393

Query: 359 ACGHAGLVDKGREIFESMER-----DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           AC +   +  GR+    + +      Y     +     ++D+  + GS+E   +    M 
Sbjct: 394 ACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHML 453

Query: 414 EKPNSDVWAALL 425
           EK +   W A++
Sbjct: 454 EK-DCVSWNAMI 464



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 81/262 (30%), Positives = 131/262 (50%), Gaps = 39/262 (14%)

Query: 145 DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSY 204
           D   FS +L  + C RS     R+  R VHA I+K    ++  +   L+D Y K G    
Sbjct: 18  DSSPFSKLL--NQCARSRSA--RDTSR-VHACIIKSPFASETFIQNRLIDVYGKCGCVDV 72

Query: 205 ARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS----- 259
           AR +FD MLE+N+    S+I  F   GF++DA  IF K  + D   +N+MI G+      
Sbjct: 73  ARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRF 132

Query: 260 -----------------------------ISIETARKALEVHCQLIKNVFFEDVKLGSAL 290
                                          ++  +   ++H  + ++ +  DV +GSAL
Sbjct: 133 DEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSAL 192

Query: 291 VDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY 350
           VDMY+KCG+++ A+ VFD M  ++  +W S+I  Y +NG  ++AL++F  M +C V+P+ 
Sbjct: 193 VDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDE 252

Query: 351 VTFLGALSACGHAGLVDKGREI 372
           VT    +SAC     + +G++I
Sbjct: 253 VTLASVVSACATISAIKEGQQI 274


>gi|225432698|ref|XP_002278762.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14820
           [Vitis vinifera]
 gi|297737070|emb|CBI26271.3| unnamed protein product [Vitis vinifera]
          Length = 727

 Score =  301 bits (771), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 165/479 (34%), Positives = 267/479 (55%), Gaps = 40/479 (8%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           S P  L+      +   GL+IH    K G   +  +   L+ ++  CG +  A  MFD++
Sbjct: 124 SFPPLLKALSRVKSLVEGLEIHGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKM 183

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
             R +  ++ MI GY ++G   ++L L  ++ +    PD    S +L  S C R+     
Sbjct: 184 FHRDVVTWSIMIDGYCQSGLFNDALLLFEEMKNYNVEPDEMMLSTVL--SACGRAG---N 238

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
            + G+M+H  I++ ++  D  L +ALV  Y   G    A  +F+ M  KN++ ST+M++G
Sbjct: 239 LSYGKMIHDFIMENNIVVDPHLQSALVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTG 298

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS--------------------------- 259
           +   G +E+A  +F + V+KD+V ++AMI GY+                           
Sbjct: 299 YSKLGQIENARSVFNQMVKKDLVCWSAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTM 358

Query: 260 ISIETA-------RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ 312
           +S+ TA        +A  +H  + KN F   + + +AL++MYAKCG ++ ARR+FD M +
Sbjct: 359 LSVITACAHLGALDQAKWIHLFVDKNGFGGALPINNALIEMYAKCGSLERARRIFDKMPR 418

Query: 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           KNV +WT MI  +  +G+   AL  F  M++  ++PN +TF+G L AC HAGLV++GR+I
Sbjct: 419 KNVISWTCMISAFAMHGDAGSALRFFHQMEDENIEPNGITFVGVLYACSHAGLVEEGRKI 478

Query: 373 FESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHD 432
           F SM  ++++ PK  HY CMVDL GRA  L +AL+ V  MP  PN  +W +L+++CR+H 
Sbjct: 479 FYSMINEHNITPKHVHYGCMVDLFGRANLLREALELVEAMPLAPNVIIWGSLMAACRVHG 538

Query: 433 DVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
           ++E+   AA  + +L+  D  GA+V LSN  A A +W+ V ++R+ MK +G+ K+ GCS
Sbjct: 539 EIELGEFAAKRLLELDP-DHDGAHVFLSNIYAKARRWEDVGQVRKLMKHKGISKERGCS 596



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 202/415 (48%), Gaps = 45/415 (10%)

Query: 56  INSDTPFYGLK-IHAHITKTGVKPNTNISIKLLILHLK-CGALKYAGQMFDELPQRTLSA 113
           ++S T    LK +HA I ++ +  +T++ +KL+I       +L YA  +F+ +P+     
Sbjct: 30  LSSATSLTHLKQVHAQILRSKLDRSTSLLVKLVISSCALSSSLDYALSVFNLIPKPETHL 89

Query: 114 YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMV 173
            N  +    ++ + E++L +  ++ + G   D ++F  +LKA +  +S V      G  +
Sbjct: 90  CNRFLRELSRSEEPEKTLLVYERMRTQGLAVDRFSFPPLLKALSRVKSLVE-----GLEI 144

Query: 174 HAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFV 233
           H    K    +D  + T LV  Y   G+ + AR++FD M  ++V+  + MI G+   G  
Sbjct: 145 HGLAAKLGFDSDPFVQTGLVRMYAACGRIAEARLMFDKMFHRDVVTWSIMIDGYCQSGLF 204

Query: 234 EDA----EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSA 289
            DA    EE+    VE D ++ + ++     +   +   + +H  +++N    D  L SA
Sbjct: 205 NDALLLFEEMKNYNVEPDEMMLSTVLSACGRAGNLSYGKM-IHDFIMENNIVVDPHLQSA 263

Query: 290 LVDMYAKC-------------------------------GKIDDARRVFDHMQQKNVFTW 318
           LV MYA C                               G+I++AR VF+ M +K++  W
Sbjct: 264 LVTMYASCGSMDLALNLFEKMTPKNLVASTAMVTGYSKLGQIENARSVFNQMVKKDLVCW 323

Query: 319 TSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER 378
           ++MI GY ++ +P +AL LF  MQ   ++P+ VT L  ++AC H G +D+ + I   +++
Sbjct: 324 SAMISGYAESDSPQEALNLFNEMQSLGIKPDQVTMLSVITACAHLGALDQAKWIHLFVDK 383

Query: 379 DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDD 433
           +      +     ++++  + GSLE+A +   +MP K N   W  ++S+  +H D
Sbjct: 384 N-GFGGALPINNALIEMYAKCGSLERARRIFDKMPRK-NVISWTCMISAFAMHGD 436


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  301 bits (770), Expect = 7e-79,   Method: Compositional matrix adjust.
 Identities = 168/482 (34%), Positives = 276/482 (57%), Gaps = 15/482 (3%)

Query: 16  HNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTG 75
           H +H +     + F  ++QN +   + +T  S+ S  +   N +    G +IH  IT++G
Sbjct: 507 HAQHGSYETAYKLFQ-EMQNEELEPDNITFASVLSGCK---NPEALELGKQIHGRITESG 562

Query: 76  VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVR 135
           ++ + N+   L+ ++++CG+L+ A  +F  L  R + ++  MI G    G+  +++ L  
Sbjct: 563 LQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFW 622

Query: 136 KLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDS 195
           ++ + G RP   TFS ILK    C S+  L    G+ V A IL    + D  +  AL+ +
Sbjct: 623 QMQNEGFRPVKSTFSSILKV---CTSSACLDE--GKKVIAYILNSGYELDTGVGNALISA 677

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIV----VY 251
           Y K G  + AR VFD M  ++++    +I+G+   G  + A E   +  E+D+V     +
Sbjct: 678 YSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSF 737

Query: 252 NAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311
            +++   S S     +   VH +++K     DV++G+AL+ MYAKCG   +A+ VFD++ 
Sbjct: 738 VSLLNACS-SFSALEEGKRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNII 796

Query: 312 QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371
           +KNV TW +MI+ Y ++G  ++AL  F  M++  ++P+  TF   LSAC HAGLV +G +
Sbjct: 797 EKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQ 856

Query: 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           IF SME +Y + P +EHY C+V LLGRA   ++A   + +MP  P++ VW  LL +CR+H
Sbjct: 857 IFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIH 916

Query: 432 DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
            ++ +A  AAN   KLNA + P  Y+ LSN  AAAG+WD V ++R  M+ RG+ K+ G S
Sbjct: 917 GNIALAEHAANNALKLNARN-PAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRS 975

Query: 492 WV 493
           W+
Sbjct: 976 WI 977



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 118/417 (28%), Positives = 203/417 (48%), Gaps = 26/417 (6%)

Query: 26  NQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIK 85
           N  F P    Y S+   LTA   P+ L++         G KIH+ I K G + +  +   
Sbjct: 121 NAGFIPNKITYISI---LTACYSPAELEN---------GKKIHSQIIKAGYQRDPRVQNS 168

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           LL ++ KCG L  A Q+F  +  R + +YN M+  Y +   V+E L L  ++ S G  PD
Sbjct: 169 LLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPD 228

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
             T+  +L A T      P   + G+ +H   ++  + +D  + TALV   V+ G    A
Sbjct: 229 KVTYINLLDAFT-----TPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSA 283

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGF-VEDAEEIFRKTVEKDIVVYNAMIEGYSISIET 264
           +  F    +++V+   ++I+     G  VE  E+ +R  +  D V  N       ++  +
Sbjct: 284 KQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYR--MRSDGVALNRTTYLSILNACS 341

Query: 265 ARKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
             KALE    +H  + ++    DV++G+AL+ MYA+CG +  AR +F  M ++++ +W +
Sbjct: 342 TSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNA 401

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
           +I GY +  +  +A+ L+  MQ   V+P  VTFL  LSAC ++     G+ I E + R  
Sbjct: 402 IIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRS- 460

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
            +K        ++++  R GSL +A + V E  +  +   W ++++    H   E A
Sbjct: 461 GIKSNGHLANALMNMYRRCGSLMEA-QNVFEGTQARDVISWNSMIAGHAQHGSYETA 516



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 187/372 (50%), Gaps = 12/372 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IHA + +  V P+  +S  L+ +++KC ++  A Q+F E+P+R + ++N +I+ Y + G
Sbjct: 48  RIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQG 107

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             +++  L  ++ ++G  P+  T+  IL   T C S  P     G+ +H+QI+K   + D
Sbjct: 108 FKKKAFQLFEEMQNAGFIPNKITYISIL---TACYS--PAELENGKKIHSQIIKAGYQRD 162

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----R 241
             +  +L+  Y K G    AR VF  +  ++V+   +M+  +  + +V++   +F     
Sbjct: 163 PRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSS 222

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
           + +  D V Y  +++ ++ +     +   +H   ++     D+++G+ALV M  +CG +D
Sbjct: 223 EGISPDKVTYINLLDAFT-TPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVD 281

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            A++ F     ++V  + ++I    ++G+  +A E +  M+   V  N  T+L  L+AC 
Sbjct: 282 SAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACS 341

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
            +  ++ G+ I   +  D      ++    ++ +  R G L +A +    MP K +   W
Sbjct: 342 TSKALEAGKLIHSHISED-GHSSDVQIGNALISMYARCGDLPKARELFYTMP-KRDLISW 399

Query: 422 AALLSSCRLHDD 433
            A+++     +D
Sbjct: 400 NAIIAGYARRED 411



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 190/392 (48%), Gaps = 21/392 (5%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           N L A + PS L           G +IH    + G+  +  +   L+ + ++CG +  A 
Sbjct: 234 NLLDAFTTPSMLDE---------GKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAK 284

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           Q F     R +  YN +IA   ++G   E+     ++ S G   +  T+  IL A   C 
Sbjct: 285 QAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNA---CS 341

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           ++  L    G+++H+ I +    +D  +  AL+  Y + G    AR +F  M ++++I  
Sbjct: 342 TSKAL--EAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISW 399

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLI 276
            ++I+G+  +    +A  ++++   + +    V +  ++   + S   A   + +H  ++
Sbjct: 400 NAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKM-IHEDIL 458

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           ++    +  L +AL++MY +CG + +A+ VF+  Q ++V +W SMI G+ ++G+   A +
Sbjct: 459 RSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYK 518

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           LF  MQ   ++P+ +TF   LS C +   ++ G++I   +  +  ++  +     ++++ 
Sbjct: 519 LFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRIT-ESGLQLDVNLGNALINMY 577

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
            R GSL+ A + V    +  +   W A++  C
Sbjct: 578 IRCGSLQDA-RNVFHSLQHRDVMSWTAMIGGC 608



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 146/335 (43%), Gaps = 53/335 (15%)

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
           C R  + LP    + +HAQ+++  V  D  L   L++ YVK      A  VF  M  ++V
Sbjct: 37  CTRKRL-LPE--AKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDV 93

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKT-----VEKDIVVYNAMIEGYS-ISIETARKALEV 271
           I   S+IS +  QGF + A ++F +      +   I   + +   YS   +E  +K   +
Sbjct: 94  ISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKK---I 150

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
           H Q+IK  +  D ++ ++L+ MY KCG +  AR+VF  +  ++V ++ +M+  Y +    
Sbjct: 151 HSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYV 210

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC 391
            + L LF  M    + P+ VT++  L A     ++D+G+ I +                 
Sbjct: 211 KECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHK----------------- 253

Query: 392 MVDLLGRAGSLEQALKFVLEMPEKPNSD--VWAALLSSCRLHDDVEMANIAANEIFKLNA 449
                             L + E  NSD  V  AL++ C    DV+    +A + FK  A
Sbjct: 254 ------------------LTVEEGLNSDIRVGTALVTMCVRCGDVD----SAKQAFKGTA 291

Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGV 484
           +     Y AL   LA  G      E   +M+  GV
Sbjct: 292 DRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGV 326


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  300 bits (769), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 162/456 (35%), Positives = 272/456 (59%), Gaps = 10/456 (2%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           T +S P A++   +    F G + H      G + +  +S  L++++  CG L+ A ++F
Sbjct: 75  TRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVF 134

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF--SMILKASTCCRS 161
           DE+P+R + ++  MI GY  NG   +++SL + L+      D   F  SM L +     S
Sbjct: 135 DEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACS 194

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK--TSYARIVFDMMLEKNVIC 219
            VP  + L   +H+ ++K        +   L+D+Y KGG+   + AR +FD +++K+ + 
Sbjct: 195 RVP-AKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVS 253

Query: 220 STSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV----HCQL 275
             S++S +   G   +A E+FR+ V+  +V +NA+     +   +   AL +    H Q+
Sbjct: 254 YNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQV 313

Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
           I+    +DV +G++++DMY KCG+++ AR+ FD M+ KNV +WT+MI GYG +G+  +AL
Sbjct: 314 IRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKAL 373

Query: 336 ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDL 395
           ELF  M +  V+PNY+TF+  L+AC HAGL  +G   F +M+  + ++P +EHY CMVDL
Sbjct: 374 ELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDL 433

Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA 455
           LGRAG L++A   +  M  KP+S +W++LL++CR+H +VE+A I+   +F+L++++  G 
Sbjct: 434 LGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSN-CGY 492

Query: 456 YVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
           Y+ LS+  A AG+W  V  +R  MK RG++K  G S
Sbjct: 493 YMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFS 528



 Score = 40.8 bits (94), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 2/117 (1%)

Query: 309 HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDK 368
           ++ + +VF+W S+I    ++G+  +AL  F  M++  + P   +F  A+ AC     +  
Sbjct: 35  YVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFS 94

Query: 369 GREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
           G++  +     +  +  +   + ++ +    G LE A K   E+P K N   W +++
Sbjct: 95  GKQTHQQAFV-FGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP-KRNIVSWTSMI 149


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 162/456 (35%), Positives = 272/456 (59%), Gaps = 10/456 (2%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           T +S P A++   +    F G + H      G + +  +S  L++++  CG L+ A ++F
Sbjct: 75  TRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVF 134

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF--SMILKASTCCRS 161
           DE+P+R + ++  MI GY  NG   +++SL + L+      D   F  SM L +     S
Sbjct: 135 DEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACS 194

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK--TSYARIVFDMMLEKNVIC 219
            VP  + L   +H+ ++K        +   L+D+Y KGG+   + AR +FD +++K+ + 
Sbjct: 195 RVP-AKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVS 253

Query: 220 STSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV----HCQL 275
             S++S +   G   +A E+FR+ V+  +V +NA+     +   +   AL +    H Q+
Sbjct: 254 YNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQV 313

Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
           I+    +DV +G++++DMY KCG+++ AR+ FD M+ KNV +WT+MI GYG +G+  +AL
Sbjct: 314 IRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKAL 373

Query: 336 ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDL 395
           ELF  M +  V+PNY+TF+  L+AC HAGL  +G   F +M+  + ++P +EHY CMVDL
Sbjct: 374 ELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDL 433

Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA 455
           LGRAG L++A   +  M  KP+S +W++LL++CR+H +VE+A I+   +F+L++++  G 
Sbjct: 434 LGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSN-CGY 492

Query: 456 YVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
           Y+ LS+  A AG+W  V  +R  MK RG++K  G S
Sbjct: 493 YMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFS 528


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 157/434 (36%), Positives = 256/434 (58%), Gaps = 11/434 (2%)

Query: 64   GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
            G +IH  I ++G++ + N+   L+ ++++CG+L+ A ++F  L  R + ++  MI G+  
Sbjct: 606  GRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFAD 665

Query: 124  NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
             G+  ++  L  ++ + G +P   TFS ILKA   C S+  L    G+ V A IL    +
Sbjct: 666  QGEDRKAFELFWQMQNDGFKPVKSTFSSILKA---CMSSACLDE--GKKVIAHILNSGYE 720

Query: 184  ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
             D  +  AL+ +Y K G  + AR VFD M  ++++    MI+G+   G    A +   + 
Sbjct: 721  LDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQM 780

Query: 244  VEKDIVV----YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
             E+ +V+    + +++   S S     +   VH +++K     DV++G+AL+ MYAKCG 
Sbjct: 781  QEQGVVLNKFSFVSILNACS-SFSALEEGKRVHAEIVKRKMQGDVRVGAALISMYAKCGS 839

Query: 300  IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
            +++A+ VFD+  +KNV TW +MI+ Y ++G  ++AL+ F  M +  ++P+  TF   LSA
Sbjct: 840  LEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSA 899

Query: 360  CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
            C H+GLV +G  IF S+E  + + P +EHY C+V LLGRAG  ++A   + +MP  P++ 
Sbjct: 900  CNHSGLVMEGNRIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAA 959

Query: 420  VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
            VW  LL +CR+H +V +A  AAN   KLNA + P  YV LSN  AAAG+WD V ++R  M
Sbjct: 960  VWETLLGACRIHGNVALAEHAANNALKLNARN-PAVYVLLSNVYAAAGRWDDVAKIRRVM 1018

Query: 480  KLRGVLKDTGCSWV 493
            + RG+ K+ G SW+
Sbjct: 1019 EGRGIRKEPGRSWI 1032



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 107/378 (28%), Positives = 192/378 (50%), Gaps = 10/378 (2%)

Query: 57  NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNY 116
           NS     G  IH  I ++G+K N +++  L+ ++ +CG++  A  +F+    R + ++N 
Sbjct: 498 NSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNS 557

Query: 117 MIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
           MIAG+ ++G  E +  L  ++   G  PD  TF+ +L     C++  P    LGR +H  
Sbjct: 558 MIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVL---VGCKN--PEALELGRQIHML 612

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
           I++  ++ D  L  AL++ Y++ G    A  VF  +  +NV+  T+MI GF  QG    A
Sbjct: 613 IIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKA 672

Query: 237 EEIFRKTVE---KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDM 293
            E+F +      K +    + I    +S     +  +V   ++ + +  D  +G+AL+  
Sbjct: 673 FELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYELDTGVGNALISA 732

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           Y+K G + DAR+VFD M  +++ +W  MI GY +NG    AL+    MQE  V  N  +F
Sbjct: 733 YSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSF 792

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           +  L+AC     +++G+ +   + +   M+  +   A ++ +  + GSLE+A +      
Sbjct: 793 VSILNACSSFSALEEGKRVHAEIVKR-KMQGDVRVGAALISMYAKCGSLEEAQEVFDNFT 851

Query: 414 EKPNSDVWAALLSSCRLH 431
           EK N   W A++++   H
Sbjct: 852 EK-NVVTWNAMINAYAQH 868



 Score =  152 bits (384), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 111/413 (26%), Positives = 202/413 (48%), Gaps = 24/413 (5%)

Query: 29  FPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLI 88
           F P    Y S+   LTA   P+ L+         YG KIH+ I + G + +  +   LL 
Sbjct: 179 FIPSKITYISI---LTACCSPAELE---------YGKKIHSKIIEAGYQRDPRVQNSLLN 226

Query: 89  LHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYT 148
           ++ KC  L  A Q+F  + +R + +YN M+  Y +   VEE + L  ++ S G  PD  T
Sbjct: 227 MYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVT 286

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIV 208
           +  +L A T      P   + G+ +H   +   + +D  + TAL   +V+ G  + A+  
Sbjct: 287 YINLLDAFT-----TPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQA 341

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKA 268
            +   +++V+   ++I+     G  E+A E + + +  D VV N       ++  +  KA
Sbjct: 342 LEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQ-MRSDGVVMNRTTYLSVLNACSTSKA 400

Query: 269 LE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
           L     +H  + +     DV++G++L+ MYA+CG +  AR +F+ M ++++ +W ++I G
Sbjct: 401 LGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAG 460

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP 384
           Y +  +  +A++L+  MQ   V+P  VTFL  LSAC ++     G+ I E + R   +K 
Sbjct: 461 YARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRS-GIKS 519

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
                  ++++  R GS+ +A + V E     +   W ++++    H   E A
Sbjct: 520 NGHLANALMNMYRRCGSIMEA-QNVFEGTRARDIISWNSMIAGHAQHGSYEAA 571



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 184/372 (49%), Gaps = 12/372 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IHA + + GV P+  +S  L+ +++KC ++  A Q+F ++P+R + ++N +I+ Y + G
Sbjct: 103 RIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQG 162

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             +++  L  ++ ++G  P   T+  IL A  CC    P     G+ +H++I++   + D
Sbjct: 163 FKKKAFQLFEEMQTAGFIPSKITYISILTA--CCS---PAELEYGKKIHSKIIEAGYQRD 217

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----R 241
             +  +L++ Y K      AR VF  +  ++V+   +M+  +  + +VE+   +F     
Sbjct: 218 PRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSS 277

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
           + +  D V Y  +++ ++ +     +   +H   +      D+++G+AL  M+ +CG + 
Sbjct: 278 EGIPPDKVTYINLLDAFT-TPSMLDEGKRIHKLAVNEGLNSDIRVGTALATMFVRCGDVA 336

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            A++  +    ++V  + ++I    ++G+  +A E +  M+   V  N  T+L  L+AC 
Sbjct: 337 GAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACS 396

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
            +  +  G E+  S   +      ++    ++ +  R G L +A +    MP K +   W
Sbjct: 397 TSKALGAG-ELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMP-KRDLISW 454

Query: 422 AALLSSCRLHDD 433
            A+++     +D
Sbjct: 455 NAIIAGYARRED 466



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/404 (21%), Positives = 195/404 (48%), Gaps = 24/404 (5%)

Query: 26  NQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIK 85
           ++  PP    Y +L   L A + PS L           G +IH      G+  +  +   
Sbjct: 277 SEGIPPDKVTYINL---LDAFTTPSMLDE---------GKRIHKLAVNEGLNSDIRVGTA 324

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           L  + ++CG +  A Q  +    R +  YN +IA   ++G  EE+     ++ S G   +
Sbjct: 325 LATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMN 384

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
             T+  +L A   C ++  L    G ++H+ I +    +D  +  +L+  Y + G    A
Sbjct: 385 RTTYLSVLNA---CSTSKAL--GAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRA 439

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSIS 261
           R +F+ M ++++I   ++I+G+  +    +A +++++   + +    V +  ++   + S
Sbjct: 440 RELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNS 499

Query: 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
              +   + +H  ++++    +  L +AL++MY +CG I +A+ VF+  + +++ +W SM
Sbjct: 500 SAYSDGKM-IHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSM 558

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           I G+ ++G+   A +LF  M++  ++P+ +TF   L  C +   ++ GR+I   +  +  
Sbjct: 559 IAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQI-HMLIIESG 617

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
           ++  +     ++++  R GSL+ A +    +  + N   W A++
Sbjct: 618 LQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHR-NVMSWTAMI 660



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 130/274 (47%), Gaps = 13/274 (4%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           + +HAQ+++  V  D  L   L++ YVK    S A  VF  M  ++VI   S+IS +  Q
Sbjct: 102 KRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQ 161

Query: 231 GFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETA-------RKALEVHCQLIKNVFFED 283
           GF + A ++F +      +          ISI TA           ++H ++I+  +  D
Sbjct: 162 GFKKKAFQLFEEMQTAGFIPSKITY----ISILTACCSPAELEYGKKIHSKIIEAGYQRD 217

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
            ++ ++L++MY KC  +  AR+VF  + +++V ++ +M+  Y +     + + LF  M  
Sbjct: 218 PRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSS 277

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE 403
             + P+ VT++  L A     ++D+G+ I + +  +  +   +     +  +  R G + 
Sbjct: 278 EGIPPDKVTYINLLDAFTTPSMLDEGKRIHK-LAVNEGLNSDIRVGTALATMFVRCGDVA 336

Query: 404 QALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
            A K  LE     +  V+ AL+++   H   E A
Sbjct: 337 GA-KQALEAFADRDVVVYNALIAALAQHGHYEEA 369



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/140 (27%), Positives = 77/140 (55%), Gaps = 3/140 (2%)

Query: 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
           +A  +H Q+++     D+ L + L++MY KC  + DA +VF  M +++V +W S+I  Y 
Sbjct: 100 EAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYA 159

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES-MERDYSMKPK 385
           + G   +A +LF  MQ     P+ +T++  L+AC     ++ G++I    +E  Y   P+
Sbjct: 160 QQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPR 219

Query: 386 MEHYACMVDLLGRAGSLEQA 405
           +++   ++++ G+   L  A
Sbjct: 220 VQN--SLLNMYGKCEDLPSA 237


>gi|225431281|ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 175/474 (36%), Positives = 267/474 (56%), Gaps = 47/474 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLL--ILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           ++HAHI + G++    +  KLL  +  L      Y   +F ++       +  +I GY  
Sbjct: 57  QVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYAL 116

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ-ILKCDV 182
            G   ES+ L   +   G  P  +TF+ +LKA +       L  NLGR VH Q IL    
Sbjct: 117 QGPFMESVLLYNSMRRQGIGPVSFTFTALLKACS-----AALDVNLGRQVHTQTILIGGF 171

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            +D  +   L+D YVK G       VFD ML+++VI  TS+I  +   G +E A E+F  
Sbjct: 172 GSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDG 231

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALEV------------------------------H 272
              KD+V + AM+ GY+ +    R+ALEV                              +
Sbjct: 232 LPMKDMVAWTAMVTGYAQNAR-PREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKY 290

Query: 273 CQLIKNVFFE-------DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
              +++V  +       +V +GSAL+DMYAKCG ++DA +VF+ M+++NV++++SMI G+
Sbjct: 291 ANWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGF 350

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
             +G    A+ELF  M +  ++PN VTF+G L+AC HAG+V++G+++F  ME  + + P 
Sbjct: 351 AMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMMEECHGVAPS 410

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIF 445
            +HYACMVDLLGRAG LE+AL  V  MP  P+  VW ALL +CR+H + +MA IAA+ +F
Sbjct: 411 EDHYACMVDLLGRAGRLEEALNLVKMMPMNPHGGVWGALLGACRIHGNPDMAQIAASHLF 470

Query: 446 KLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           +L  N   G Y+ LSN  A+AG+WD V+++R+ M+ +G+ K+ GCSWV  + G+
Sbjct: 471 ELEPNG-IGNYILLSNIYASAGRWDDVSKVRKLMRAKGLKKNPGCSWVEGKKGI 523



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 151/352 (42%), Gaps = 41/352 (11%)

Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGG--KTSYARIVFDMMLEKNVICSTSMIS 225
           N  + VHA I +  ++    +   L+ +  K       Y R+VF  +   N    T++I 
Sbjct: 53  NQVKQVHAHIFRKGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIR 112

Query: 226 GFMSQG-FVEDA---EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQ-LIKNVF 280
           G+  QG F+E       + R+ +      + A+++  S +++      +VH Q ++   F
Sbjct: 113 GYALQGPFMESVLLYNSMRRQGIGPVSFTFTALLKACSAALDV-NLGRQVHTQTILIGGF 171

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS-------------------- 320
             D+ +G+ L+DMY KCG +    RVFD M  ++V +WTS                    
Sbjct: 172 GSDLYVGNTLIDMYVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDG 231

Query: 321 -----------MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKG 369
                      M+ GY +N  P +ALE+F  MQ   V+ + VT +G +SAC   G     
Sbjct: 232 LPMKDMVAWTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYA 291

Query: 370 REIFESMERD-YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
             + +  E+  +     +   + ++D+  + GS+E A K V E  E+ N   +++++   
Sbjct: 292 NWVRDVAEQSGFGPTSNVVVGSALIDMYAKCGSVEDAYK-VFERMEERNVYSYSSMIVGF 350

Query: 429 RLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
            +H     A    +E+ K         ++ +    + AG  +   +L   M+
Sbjct: 351 AMHGLAGAAMELFDEMLKTEIKPNRVTFIGVLTACSHAGMVEQGQQLFAMME 402


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  300 bits (768), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 159/471 (33%), Positives = 264/471 (56%), Gaps = 47/471 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+++H+ I K+    +  I   L+ ++ KCG +  A ++FDE+  R + ++N +I  + +
Sbjct: 171 GVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQ 230

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD-V 182
           NG   E+L + + ++ S   PD  T + ++ A   C S   +   +G+ VH +++K D +
Sbjct: 231 NGPAVEALDVFQMMLESRVEPDEVTLASVISA---CASLSAI--KVGQEVHGRVVKNDKL 285

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           + D +L  A VD Y K  +   AR +FD M  +NVI  TSMISG+      + A  +F K
Sbjct: 286 RNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTK 345

Query: 243 TVEKDIVVYNAMIEGYSISIETARK----------------------------------A 268
             E+++V +NA+I GY+ + E                                       
Sbjct: 346 MAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLG 405

Query: 269 LEVHCQLIKNVF------FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
           ++ H  ++K+ F       +D+ +G++L+DMY KCG +++   VF  M +++  +W +MI
Sbjct: 406 MQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMI 465

Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382
            G+ +NG  N+ALELF  M E   +P+++T +G LSACGHAG V++GR  F SM RD+ +
Sbjct: 466 IGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGV 525

Query: 383 KPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAAN 442
            P  +HY CMVDLLGRAG LE+A   + EMP +P+S +W +LL++C++H ++ +    A 
Sbjct: 526 APLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAE 585

Query: 443 EIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           ++ ++  ++  G YV LSN  A  GKW+ V  +R+ M+  GV K  GCSW+
Sbjct: 586 KLLEVEPSN-SGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWI 635



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 145/278 (52%), Gaps = 36/278 (12%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           R VHA ++K     +  +   L+D+Y K G     R VFD M ++N+    S+++G    
Sbjct: 40  RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99

Query: 231 GFVEDAEEIFRKTVEKDIVVYNAMIEGYS---------------------------ISIE 263
           GF+++A+ +FR   E+D   +N+M+ G++                            S+ 
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159

Query: 264 TA-------RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF 316
           +A        K ++VH  + K+ F  DV +GSALVDMY+KCG ++DA+RVFD M  +NV 
Sbjct: 160 SACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVV 219

Query: 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM 376
           +W S+I  + +NG   +AL++F MM E  V+P+ VT    +SAC     +  G+E+   +
Sbjct: 220 SWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRV 279

Query: 377 ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE-MP 413
            ++  ++  +      VD+  +   +++A +F+ + MP
Sbjct: 280 VKNDKLRNDIILSNAFVDMYAKCSRIKEA-RFIFDSMP 316



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/369 (28%), Positives = 171/369 (46%), Gaps = 73/369 (19%)

Query: 60  TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIA 119
           +  Y   +HA + K+G      I  +L+  + KCG+L+   Q+FD++PQR +  +N ++ 
Sbjct: 35  SAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVT 94

Query: 120 GYLKNGQVEESLSLVRKL-----------VSSGERPD--------------------GYT 148
           G  K G ++E+ SL R +           VS   + D                     Y+
Sbjct: 95  GLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYS 154

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIV 208
           F+ +L  S C   N     N G  VH+ I K    +D  + +ALVD Y K G  + A+ V
Sbjct: 155 FASVL--SACSGLN---DMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRV 209

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR----KTVEKDIVVYNAMIEGYSISIET 264
           FD M ++NV+   S+I+ F   G   +A ++F+      VE D V   ++I   + S+  
Sbjct: 210 FDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACA-SLSA 268

Query: 265 ARKALEVHCQLIKN-VFFEDVKLGSALVDMYAKCGKIDDARRVFD--------------- 308
            +   EVH +++KN     D+ L +A VDMYAKC +I +AR +FD               
Sbjct: 269 IKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMIS 328

Query: 309 ----------------HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
                            M ++NV +W ++I GY +NG   +AL LFC+++   V P + +
Sbjct: 329 GYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYS 388

Query: 353 FLGALSACG 361
           F   L AC 
Sbjct: 389 FANILKACA 397


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  300 bits (767), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 169/508 (33%), Positives = 285/508 (56%), Gaps = 34/508 (6%)

Query: 11  VFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYI--NSDTPFY----- 63
           V SSTH   +       TFP    ++  L+  +  T L  AL H      DT F      
Sbjct: 7   VLSSTHKAIFQKPRLLSTFPS--NSHHVLNIHIHDTRLREALLHMALRGLDTNFQDYNTV 64

Query: 64  ------------GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL 111
                       G ++HAH+ KT   P   +  +L++ ++KC +L+ A  +FD +P+R +
Sbjct: 65  LNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDSLRDARHVFDVMPERNV 124

Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR 171
            ++  MI+ Y + G   ++LSL  +++ SG  P+ +TF+ +L  ++C  S+  +   LGR
Sbjct: 125 VSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVL--TSCIGSSGFV---LGR 179

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
            +H+ I+K + +A   + ++L+D Y K GK   AR +F  + E++V+  T++ISG+   G
Sbjct: 180 QIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVVSCTAIISGYAQLG 239

Query: 232 FVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG 287
             E+A E+FR+     ++ + V Y +++   S  +       +VH  L+++     V L 
Sbjct: 240 LDEEALELFRRLQREGMQSNYVTYTSVLTALS-GLAALDHGKQVHNHLLRSEVPSYVVLQ 298

Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF-CMMQECCV 346
           ++L+DMY+KCG +  ARR+FD + ++ V +W +M+ GY K+G   + LELF  M+ E  V
Sbjct: 299 NSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGREVLELFNLMIDENKV 358

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMER-DYSMKPKMEHYACMVDLLGRAGSLEQA 405
           +P+ VT L  LS C H GL DKG +IF  M     S++P  +HY C+VD+LGRAG +E A
Sbjct: 359 KPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGCVVDMLGRAGRVEAA 418

Query: 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465
            +FV +MP +P++ +W  LL +C +H ++++     +++ ++   +  G YV LSN  A+
Sbjct: 419 FEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPEN-AGNYVILSNLYAS 477

Query: 466 AGKWDSVTELREKMKLRGVLKDTGCSWV 493
           AG+W+ V  LR  M  + V K+ G SW+
Sbjct: 478 AGRWEDVRSLRNLMLKKAVTKEPGRSWI 505


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 159/442 (35%), Positives = 262/442 (59%), Gaps = 15/442 (3%)

Query: 59  DTPFYGLK-IHAHITKTG-VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNY 116
           +  F  LK IH +  + G ++ +  ++   +  + KCG+L YA  +F  +  + +S++N 
Sbjct: 413 EIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNA 472

Query: 117 MIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
           +I G+++NG   ++L L   +  SG  PD +T + +L A    +S      + G+ +H  
Sbjct: 473 LIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASLLSACARLKS-----LSCGKEIHGS 527

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
           +L+   + D+ +  +LV  YV+ GK   A++ FD M EKN++C  +MI+GF    F  DA
Sbjct: 528 MLRNGFELDEFICISLVSLYVQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDA 587

Query: 237 EEIFRKTVEK-----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALV 291
            ++F + +       +I +  A+  G    +   R   E+HC  +K+   E   +  +L+
Sbjct: 588 LDMFHQMLSSKIWPDEISIIGAL--GACSQVSALRLGKELHCFAVKSHLTEHSFVTCSLI 645

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
           DMYAKCG ++ ++ +FD +  K   TW  +I GYG +G+  +A+ELF  MQ    +P+ V
Sbjct: 646 DMYAKCGCMEQSQNIFDRVHLKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSV 705

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
           TF+  L+AC HAGLV +G E    M+  + +KPK+EHYAC+VD+LGRAG L +AL+ V E
Sbjct: 706 TFIALLTACNHAGLVAEGLEYLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNE 765

Query: 412 MPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471
           +P+KP+S +W++LLSSCR + D+++    AN++ +L   D+   YV +SN  A  GKWD 
Sbjct: 766 LPDKPDSRIWSSLLSSCRNYRDLDIGEKVANKLLELGP-DKAENYVLISNFYARLGKWDE 824

Query: 472 VTELREKMKLRGVLKDTGCSWV 493
           V ++R++MK  G+ KD GCSW+
Sbjct: 825 VRKMRQRMKEIGLQKDAGCSWI 846



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 115/389 (29%), Positives = 191/389 (49%), Gaps = 19/389 (4%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +LP  ++  +       G  +H    KT V  +  +   L+ ++ K G ++ A ++FD++
Sbjct: 198 TLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKM 257

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE--RPDGYTFSMILKASTCCRSNVP 164
           PQR L ++N ++   L+NG  EES  L + L++  E   PD  T  M+     C R    
Sbjct: 258 PQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVAT--MVTVIPLCARQG-- 313

Query: 165 LPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
               LG + H   LK  +  +  + ++L+D Y K G    AR++FD   EKNVI   SMI
Sbjct: 314 -EVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDTN-EKNVISWNSMI 371

Query: 225 SGFMSQGFVEDAEEIFRKTVEKDIVVYN--AMIEGYSISIETAR--KALEVHCQLIKNVF 280
            G+        A E+ RK   +D V  N   ++    +  E  +  K  E+H   +++ F
Sbjct: 372 GGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALRHGF 431

Query: 281 FE-DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
            + D  + +A V  YAKCG +  A  VF  M+ K V +W ++I G+ +NG P +AL+L+ 
Sbjct: 432 IQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYL 491

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC--MVDLLG 397
           +M+   ++P+  T    LSAC     +  G+EI  SM R+     +++ + C  +V L  
Sbjct: 492 LMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRN---GFELDEFICISLVSLYV 548

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           + G +  A  F   M EK N   W  +++
Sbjct: 549 QCGKILLAKLFFDNMEEK-NLVCWNTMIN 576



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 171/370 (46%), Gaps = 15/370 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISI-KLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G KIH  I+ +    N  + I +L+ ++  C +   +  +F+   ++ L  +N +++GYL
Sbjct: 112 GRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYL 171

Query: 123 KNGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           +N    +++ +  +++S  E  PD +T   ++KA             LG  VH   LK  
Sbjct: 172 RNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYD-----VRLGEAVHGFALKTK 226

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           V +D  +  AL+  Y K G    A  VFD M ++N++   S++   +  G  E++  +F+
Sbjct: 227 VLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFK 286

Query: 242 KTVEKDIVVYNAMIEGYSISIETARK-----ALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
             +  D  +   +    ++    AR+      +  H   +K     ++K+ S+L+DMY+K
Sbjct: 287 GLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSK 346

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ-ECCVQPNYVTFLG 355
           CG + +AR +FD   +KNV +W SMI GY K+ +   A EL   MQ E  V+ N VT L 
Sbjct: 347 CGYLCEARVLFD-TNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLN 405

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            L  C       K +EI     R   ++         V    + GSL  A      M  K
Sbjct: 406 VLPVCEEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESK 465

Query: 416 PNSDVWAALL 425
             S  W AL+
Sbjct: 466 MVSS-WNALI 474



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/265 (23%), Positives = 121/265 (45%), Gaps = 12/265 (4%)

Query: 169 LGRMVHAQILKC-DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
           +GR +H  I      + D VL T LV  Y        + +VF+    KN+    +++SG+
Sbjct: 111 IGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGY 170

Query: 228 MSQGFVEDAEEIFRKTVE-----KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
           +      DA  +F + +       D      +I+   + +   R    VH   +K     
Sbjct: 171 LRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKA-CVGVYDVRLGEAVHGFALKTKVLS 229

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF--CM 340
           DV +G+AL+ MY K G ++ A +VFD M Q+N+ +W S++    +NG   ++  LF   +
Sbjct: 230 DVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLL 289

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
             +  + P+  T +  +  C   G V  G  +F  +     +  +++  + ++D+  + G
Sbjct: 290 NGDEGLMPDVATMVTVIPLCARQGEVRLGM-VFHGLALKLGLCGELKVNSSLLDMYSKCG 348

Query: 401 SLEQALKFVLEMPEKPNSDVWAALL 425
            L +A + + +  EK N   W +++
Sbjct: 349 YLCEA-RVLFDTNEK-NVISWNSMI 371


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  298 bits (762), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 169/441 (38%), Positives = 255/441 (57%), Gaps = 25/441 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA I K+G K N  +   L+ ++  CG +  A  +FD +P+R++ A+N M++GY K
Sbjct: 140 GEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTK 199

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR-SNVPLPRNLGRMVHAQILKCDV 182
           NG  +E + L RK++      D  T   +L A  C R +N+     +G ++   I+   +
Sbjct: 200 NGLWDEVVKLFRKILELRIEFDDVTMISVLMA--CGRLANL----EIGELIGEYIVSKGL 253

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           + ++ L T+L+D Y K G+   AR +FD M +++V+  ++MISG+      ++A  +F +
Sbjct: 254 RRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHE 313

Query: 243 TVEKDI---------VVYN-AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVD 292
             + ++         V+Y+ AM+  Y    ET +    VH  + K      V LG+ L+D
Sbjct: 314 MQKGNVYPNEVTMVSVLYSCAMLGAY----ETGK---WVHFYIKKKKMKLTVTLGTQLID 366

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
            YAKCG ID +  VF  M  KNVFTWT++I G   NG    ALE F  M E  V+PN VT
Sbjct: 367 FYAKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVT 426

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
           F+G LSAC HA LVD+GR +F SM RD+ ++P++EHY CMVD+LGRAG LE+A +F+  M
Sbjct: 427 FIGVLSACSHACLVDQGRHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNM 486

Query: 413 PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSV 472
           P  PN+ VW  LL+SCR H ++EMA  +   I +L      G Y+ LSNT A  G+ +  
Sbjct: 487 PFPPNAVVWRTLLASCRAHKNIEMAEKSLEHITRLEPA-HSGDYILLSNTYALVGRVEDA 545

Query: 473 TELREKMKLRGVLKDTGCSWV 493
             +R  +K + + K  GCS +
Sbjct: 546 IRVRSLIKEKEIKKIPGCSLI 566



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 111/373 (29%), Positives = 191/373 (51%), Gaps = 16/373 (4%)

Query: 60  TPFYGLKIHAHITKTG--VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYM 117
           TP    ++HAH+ KT   + P    ++      L    + YA  +F+ + +   SAYN M
Sbjct: 33  TPKDLQQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDKPESSAYNVM 92

Query: 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQI 177
           I G       + +L L +K+     + D +TFS +LKA  C R         G  VHA I
Sbjct: 93  IRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKA--CSRMKALRE---GEQVHALI 147

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
           LK   K+++ +   L+  Y   G+   AR VFD M E++++   SM+SG+   G  ++  
Sbjct: 148 LKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVV 207

Query: 238 EIFRKTVEKDIVVYNAMIEGYSISIETARKA-LEVHCQLIKNVFFEDVK----LGSALVD 292
           ++FRK +E  I   +  +   S+ +   R A LE+   + + +  + ++    L ++L+D
Sbjct: 208 KLFRKILELRIEFDDVTM--ISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLID 265

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           MYAKCG++D AR++FD M +++V  W++MI GY +     +AL LF  MQ+  V PN VT
Sbjct: 266 MYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVT 325

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
            +  L +C   G  + G+ +   +++   MK  +     ++D   + G ++++++   EM
Sbjct: 326 MVSVLYSCAMLGAYETGKWVHFYIKKK-KMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEM 384

Query: 413 PEKPNSDVWAALL 425
             K N   W AL+
Sbjct: 385 SFK-NVFTWTALI 396



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 87/332 (26%), Positives = 164/332 (49%), Gaps = 25/332 (7%)

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDS--YVKGGKTSYARIVFDMMLEKNVICSTSM 223
           P++L + VHA +LK     D ++  A+++S   +      YA  +F+ + +        M
Sbjct: 34  PKDL-QQVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDKPESSAYNVM 92

Query: 224 ISGFMSQGFVEDAEEIFRK----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
           I G   +   ++A  +F+K    +V+ D   ++++++  S  ++  R+  +VH  ++K+ 
Sbjct: 93  IRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACS-RMKALREGEQVHALILKSG 151

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
           F  +  + + L+ MYA CG+I  AR VFD M ++++  W SM+ GY KNG  ++ ++LF 
Sbjct: 152 FKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFR 211

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE-----SMERDYSMKPKMEHYACMVD 394
            + E  ++ + VT +  L ACG    ++ G  I E      + R+ ++         ++D
Sbjct: 212 KILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLT------TSLID 265

Query: 395 LLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA--NDR 452
           +  + G ++ A K   EM +K +   W+A++S     D  + A    +E+ K N   N+ 
Sbjct: 266 MYAKCGQVDTARKLFDEM-DKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEV 324

Query: 453 PGAYVALSNTLAAA---GKWDSVTELREKMKL 481
               V  S  +  A   GKW      ++KMKL
Sbjct: 325 TMVSVLYSCAMLGAYETGKWVHFYIKKKKMKL 356


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 160/435 (36%), Positives = 254/435 (58%), Gaps = 12/435 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH+HI++ G   +  I   L+ ++ +CG L  A ++F  +P+R L ++N +IAGY +
Sbjct: 349 GKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYAR 408

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
                E++ L +++ S G +P   TF  +L  S C  S+       G+M+H  IL+  +K
Sbjct: 409 REDRGEAMRLYKQMQSEGVKPGRVTFLHLL--SACANSSAYAD---GKMIHEDILRSGIK 463

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK- 242
           ++  L  AL++ Y + G    A+ VF+    ++VI   SMI+G    G  E A ++F++ 
Sbjct: 464 SNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEM 523

Query: 243 ---TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               +E D + + +++ G   + E      ++H ++ ++    DV LG+AL++MY +CG 
Sbjct: 524 QNEELEPDNITFASVLSGCK-NPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGS 582

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ-ECCVQPNYVTFLGALS 358
           + DAR VF  +Q ++V +WT+MI G    G   +A+ELF  MQ E    P+  TF   LS
Sbjct: 583 LQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILS 642

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC HAGLV +G +IF SME +Y + P +EHY C+V LLGRA   ++A   + +MP  P++
Sbjct: 643 ACNHAGLVLEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDA 702

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            VW  LL +CR+H ++ +A  AAN   KLNA + P  Y+ LSN  AAAG+WD V ++R  
Sbjct: 703 AVWETLLGACRIHGNIALAEHAANNALKLNARN-PAVYILLSNVYAAAGRWDDVAKIRRV 761

Query: 479 MKLRGVLKDTGCSWV 493
           M+ RG+ K+ G SW+
Sbjct: 762 MEGRGIRKEPGRSWI 776



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 118/417 (28%), Positives = 204/417 (48%), Gaps = 26/417 (6%)

Query: 26  NQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIK 85
           N  F P    Y S+   LTA   P+ L++         G KIH+ I K G + +  +   
Sbjct: 121 NAGFIPNKITYISI---LTACYSPAELEN---------GKKIHSQIIKAGYQRDPRVQNS 168

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           LL ++ KCG L  A Q+F  +  R + +YN M+  Y +   V+E L L  ++ S G  PD
Sbjct: 169 LLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPD 228

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
             T+  +L A T      P   + G+ +H   ++  + +D  + TALV   V+ G    A
Sbjct: 229 KVTYINLLDAFT-----TPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSA 283

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGF-VEDAEEIFRKTVEKDIVVYNAMIEGYSISIET 264
           +  F  + +++V+   ++I+     G  VE  E+ +R  +  D V  N       ++  +
Sbjct: 284 KQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYR--MRSDGVALNRTTYLSILNACS 341

Query: 265 ARKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
             KALE    +H  + ++    DV++G+AL+ MYA+CG +  AR +F  M ++++ +W +
Sbjct: 342 TSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNA 401

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
           +I GY +  +  +A+ L+  MQ   V+P  VTFL  LSAC ++     G+ I E + R  
Sbjct: 402 IIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRS- 460

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
            +K        ++++  R GSL +A + V E  +  +   W ++++    H   E A
Sbjct: 461 GIKSNGHLANALMNMYRRCGSLMEA-QNVFEGTQARDVISWNSMIAGHAQHGSYETA 516



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 190/372 (51%), Gaps = 12/372 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IHA + + GV P+  +S  L+ +++KC ++  A Q+F E+P+R + ++N +I+ Y + G
Sbjct: 48  RIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQG 107

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             +++  L  ++ ++G  P+  T+  IL   T C S   L    G+ +H+QI+K   + D
Sbjct: 108 FKKKAFQLFEEMQNAGFIPNKITYISIL---TACYSPAELEN--GKKIHSQIIKAGYQRD 162

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----R 241
             +  +L+  Y K G    AR VF  +  ++V+   +M+  +  + +V++   +F     
Sbjct: 163 PRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSS 222

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
           + +  D V Y  +++ ++ +     +   +H   ++     D+++G+ALV M  +CG +D
Sbjct: 223 EGISPDKVTYINLLDAFT-TPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVD 281

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            A++ F  +  ++V  + ++I    ++G+  +A E +  M+   V  N  T+L  L+AC 
Sbjct: 282 SAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACS 341

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
            +  ++ G+ I   +  D      ++    ++ +  R G L +A +    MP++ +   W
Sbjct: 342 TSKALEAGKLIHSHISED-GHSSDVQIGNALISMYARCGDLPKARELFYTMPKR-DLISW 399

Query: 422 AALLSSCRLHDD 433
            A+++     +D
Sbjct: 400 NAIIAGYARRED 411



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/249 (28%), Positives = 124/249 (49%), Gaps = 19/249 (7%)

Query: 135 RKLVSSGERP-----DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLY 189
           R+ VS+  +P     D  T+  +L+   C R  + LP    + +HAQ+++  V  D  L 
Sbjct: 11  REDVSNTHQPRPTETDRATYVALLQ--NCTRKRL-LPE--AKRIHAQMVEAGVGPDIFLS 65

Query: 190 TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT-----V 244
             L++ YVK      A  VF  M  ++VI   S+IS +  QGF + A ++F +      +
Sbjct: 66  NLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFI 125

Query: 245 EKDIVVYNAMIEGYS-ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
              I   + +   YS   +E  +K   +H Q+IK  +  D ++ ++L+ MY KCG +  A
Sbjct: 126 PNKITYISILTACYSPAELENGKK---IHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRA 182

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
           R+VF  +  ++V ++ +M+  Y +     + L LF  M    + P+ VT++  L A    
Sbjct: 183 RQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTP 242

Query: 364 GLVDKGREI 372
            ++D+G+ I
Sbjct: 243 SMLDEGKRI 251



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/140 (28%), Positives = 78/140 (55%), Gaps = 3/140 (2%)

Query: 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
           +A  +H Q+++     D+ L + L++MY KC  + DA +VF  M +++V +W S+I  Y 
Sbjct: 45  EAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYA 104

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES-MERDYSMKPK 385
           + G   +A +LF  MQ     PN +T++  L+AC     ++ G++I    ++  Y   P+
Sbjct: 105 QQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPR 164

Query: 386 MEHYACMVDLLGRAGSLEQA 405
           +++   ++ + G+ G L +A
Sbjct: 165 VQN--SLLSMYGKCGDLPRA 182


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 161/465 (34%), Positives = 264/465 (56%), Gaps = 45/465 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH+HI++ G++ +  ++  L+ ++ KC +++ A ++FD + +R + +++ MIAGY +
Sbjct: 277 GRRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYAQ 336

Query: 124 NG-----QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
           +G      ++E   L+ ++   G  P+  TF  IL+A   C ++  L +  GR +HA++ 
Sbjct: 337 SGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRA---CTAHGALEQ--GRQIHAELS 391

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
           K   + D  L TA+ + Y K G    A  VF  M  KNV+  TS +S ++  G +  AE+
Sbjct: 392 KVGFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEK 451

Query: 239 IFRKTVEKDIVVYNAMIEGYS---------------------------ISIETARKALE- 270
           +F +   +++V +N MI GY+                           I+I  A  AL  
Sbjct: 452 VFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAG 511

Query: 271 ------VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
                 VH + +K     D  + ++L+ MY+KCG++ +AR VFD M  ++   W +M+ G
Sbjct: 512 LERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTVAWNAMLAG 571

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP 384
           YG++G+  +A++LF  M +  V PN +T    +SAC  AGLV +GREIF  M+ D+ M P
Sbjct: 572 YGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMMQEDFKMTP 631

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
           + +HY CMVDLLGRAG L++A +F+  MP +P+  VW ALL +C+ H++V++A  AA+ I
Sbjct: 632 RKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQLAERAAHHI 691

Query: 445 FKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTG 489
            +L  +     Y+ LSN  A AG+WD  T++R  M  RG+ KD G
Sbjct: 692 LELEPS-YASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRG 735



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/373 (24%), Positives = 183/373 (49%), Gaps = 19/373 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H  + + GV+ +  +   L+  + K   +  A Q+F  +  R +  ++ MIA Y  
Sbjct: 75  GKMVHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAG 134

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N    ++     ++  +   P+  TF  ILKA   C +   L +  GR +H  +    ++
Sbjct: 135 NNHPAKAFDTFERMTDANIEPNRITFLSILKA---CNNYSILEK--GRKIHTIVKAMGME 189

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  + TAL+  Y K G+ S A  VF  M E+NV+  T++I        + +A E++ + 
Sbjct: 190 TDVAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQM 249

Query: 244 VEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           ++  I    V + +++   + + E   +   +H  + +     D+ + +AL+ MY KC  
Sbjct: 250 LQAGISPNAVTFVSLLNSCN-TPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNS 308

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNG-----NPNQALELFCMMQECCVQPNYVTFL 354
           + +AR +FD M +++V +W++MI GY ++G     + ++  +L   M+   V PN VTF+
Sbjct: 309 VQEAREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFM 368

Query: 355 GALSACGHAGLVDKGREIFESMER-DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
             L AC   G +++GR+I   + +  + +   ++    + ++  + GS+ +A +   +M 
Sbjct: 369 SILRACTAHGALEQGRQIHAELSKVGFELDRSLQ--TAIFNMYAKCGSIYEAEQVFSKMA 426

Query: 414 EKPNSDVWAALLS 426
            K N   W + LS
Sbjct: 427 NK-NVVAWTSFLS 438



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 159/312 (50%), Gaps = 20/312 (6%)

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           K G++ E++ L+  +   G   +  T+  +++     R         G+MVH Q+ +  V
Sbjct: 33  KAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFED-----GKMVHKQLDELGV 87

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           + D  L  +L++ Y K    + A  VF  M  ++V+  +SMI+ +        A + F +
Sbjct: 88  EIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFER 147

Query: 243 TVEKDI----VVYNAMIEG---YSISIETARKALEVHCQLIKNVFFE-DVKLGSALVDMY 294
             + +I    + + ++++    YSI +E  RK   +H  ++K +  E DV + +AL+ MY
Sbjct: 148 MTDANIEPNRITFLSILKACNNYSI-LEKGRK---IH-TIVKAMGMETDVAVATALITMY 202

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           +KCG+I  A  VF  M ++NV +WT++I    ++   N+A EL+  M +  + PN VTF+
Sbjct: 203 SKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFV 262

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             L++C     +++GR I   +  +  ++  M     ++ +  +  S+++A + + +   
Sbjct: 263 SLLNSCNTPEALNRGRRIHSHIS-ERGLETDMIVANALITMYCKCNSVQEA-REIFDRMS 320

Query: 415 KPNSDVWAALLS 426
           K +   W+A+++
Sbjct: 321 KRDVISWSAMIA 332



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 93/177 (52%), Gaps = 9/177 (5%)

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           VH QL +     D+ LG++L++ Y+K   +  A +VF  M  ++V TW+SMI  Y  N +
Sbjct: 78  VHKQLDELGVEIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNH 137

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
           P +A + F  M +  ++PN +TFL  L AC +  +++KGR+I  ++ +   M+  +    
Sbjct: 138 PAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKGRKI-HTIVKAMGMETDVAVAT 196

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
            ++ +  + G +  A +   +M E+ N   W A++ +   H  +       NE F+L
Sbjct: 197 ALITMYSKCGEISVACEVFHKMTER-NVVSWTAIIQANAQHRKL-------NEAFEL 245


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 172/507 (33%), Positives = 282/507 (55%), Gaps = 51/507 (10%)

Query: 32  KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHL 91
           K+   D L N  +  S  SA    ++ +    G ++HA ++K+    +  +   L+ ++ 
Sbjct: 137 KMHREDFLLNEYSFGSALSACAGLMDLNM---GTQVHALVSKSRYSTDVYMGSALIDMYS 193

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           KCG++  A ++F  + +R L  +N +I  Y +NG   E+L +  +++ SG  PD  T + 
Sbjct: 194 KCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLAS 253

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD-VLYTALVDSYVKGGKTSYARIVFD 210
           ++ A   C S   L   L   +HA+++K +   DD VL  ALVD Y K  K + AR VFD
Sbjct: 254 VVSA---CASLCALKEGL--QIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFD 308

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETA----- 265
            M  +NV+  TSM+SG+     V+ A  +F K  ++++V +NA+I GY+ + E       
Sbjct: 309 RMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRL 368

Query: 266 -----RKAL------------------------EVHCQLIKNVF-FE-----DVKLGSAL 290
                R+++                        + H  ++K  F F+     D+ +G++L
Sbjct: 369 FRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSL 428

Query: 291 VDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY 350
           +DMY KCG I+D  RVF+ M++++  +W ++I GY +NG   +AL++F  M  C  +P++
Sbjct: 429 IDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDH 488

Query: 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410
           VT +G L AC HAGLV++GR  F SME ++ + P  +HY CMVDLLGRAG L +A   + 
Sbjct: 489 VTMIGVLCACSHAGLVEEGRHYFFSME-EHGLIPLKDHYTCMVDLLGRAGCLNEAKNLIE 547

Query: 411 EMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
            MP  P++ VW +LL++C++H ++EM   AA ++ +++  +  G YV LSN  A  G+W 
Sbjct: 548 AMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWN-SGPYVLLSNMYAELGRWG 606

Query: 471 SVTELREKMKLRGVLKDTGCSWVGTES 497
            V  +R+ M+ +GV K  GCSW+  ES
Sbjct: 607 DVVRVRKLMRQQGVTKQPGCSWIEVES 633



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 190/396 (47%), Gaps = 60/396 (15%)

Query: 77  KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRK 136
           + NT     L+ +  K G L  A ++F  +P+    ++N M++G+ ++ + EESL    K
Sbjct: 78  QRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFVK 137

Query: 137 LVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196
           +       + Y+F   L A   C   + L  N+G  VHA + K     D  + +AL+D Y
Sbjct: 138 MHREDFLLNEYSFGSALSA---CAGLMDL--NMGTQVHALVSKSRYSTDVYMGSALIDMY 192

Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYN 252
            K G  + A  VF  M+E+N++   S+I+ +   G   +A E+F +     +E D V   
Sbjct: 193 SKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLA 252

Query: 253 AMIEGYSISIETARKALEVHCQLIK-NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311
           +++   + S+   ++ L++H +++K N F +D+ LG+ALVDMYAKC K+++ARRVFD M 
Sbjct: 253 SVVSACA-SLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMS 311

Query: 312 -------------------------------QKNVFTWTSMIDGYGKNGNPNQALELFCM 340
                                          Q+NV +W ++I GY +NG   +AL LF +
Sbjct: 312 IRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRL 371

Query: 341 MQECCVQPNYVTFLGALSAC-----------GHAGLVDKGREIFESMERDYSMKPKMEHY 389
           ++   + P + TF   LSAC            H  ++ +G E     E D  +       
Sbjct: 372 LKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNS---- 427

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
             ++D+  + GS+E   +   +M E+ +   W A++
Sbjct: 428 --LIDMYMKCGSIEDGSRVFEKMKER-DCVSWNAII 460



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 137/298 (45%), Gaps = 39/298 (13%)

Query: 144 PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTS 203
           P+   F+ +L   +C RS         R+VHA+IL      +  +   L+D Y K     
Sbjct: 13  PNSSPFAKLL--DSCLRSRSARGT---RLVHARILMTQFSMEIFIQNRLIDVYGKCDCLD 67

Query: 204 YARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS---- 259
            AR +FD M ++N     S+IS     GF+++A  +F    E D   +N+M+ G++    
Sbjct: 68  DARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDR 127

Query: 260 --------------------ISIETARKA----------LEVHCQLIKNVFFEDVKLGSA 289
                                S  +A  A           +VH  + K+ +  DV +GSA
Sbjct: 128 FEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSA 187

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349
           L+DMY+KCG +  A  VF  M ++N+ TW S+I  Y +NG  ++ALE+F  M +  ++P+
Sbjct: 188 LIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPD 247

Query: 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALK 407
            VT    +SAC     + +G +I   + +    +  +     +VD+  +   + +A +
Sbjct: 248 EVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARR 305


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 168/480 (35%), Positives = 269/480 (56%), Gaps = 27/480 (5%)

Query: 26  NQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIK 85
            + F P   N  S  + L   S P AL          +G  +HA    TG+  +  ++  
Sbjct: 256 QEGFKP---NRISFLSILDGCSTPEALA---------WGKAVHAQCMNTGLVDDVRVATA 303

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           L+ +++ CG+++ A ++FD++  R + ++  MI GY +N  +E++  L   +   G +PD
Sbjct: 304 LIRMYMGCGSIEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPD 363

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
             T+  I+ A   C S+  L  +L R +H+Q+++     D ++ TALV  Y K G    A
Sbjct: 364 RITYIHIINA---CASSADL--SLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDA 418

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIE--GYS 259
           R VFD M  ++V+  ++MI  ++  G  E+A E F    R  VE D+V Y  ++   G+ 
Sbjct: 419 RQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHL 478

Query: 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWT 319
            +++     +E++ Q IK      + +G+AL++M  K G I+ AR +F++M Q++V TW 
Sbjct: 479 GALDLG---MEIYTQAIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQRDVVTWN 535

Query: 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD 379
            MI GY  +GN  +AL+LF  M +   +PN VTF+G LSAC  AG V++GR  F  +   
Sbjct: 536 VMIGGYSLHGNAREALDLFDRMLKERFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDG 595

Query: 380 YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANI 439
             + P ME Y CMVDLLGRAG L++A   +  MP KPNS +W+ LL++CR++ ++++A  
Sbjct: 596 RGIVPTMELYGCMVDLLGRAGELDEAELLINRMPLKPNSSIWSTLLAACRIYGNLDVAER 655

Query: 440 AANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           AA         D    YV LS+  AAAG W++V ++R+ M+ RGV K+ GC+W+  E  L
Sbjct: 656 AAERCLMSEPYD-GAVYVQLSHMYAAAGMWENVAKVRKVMESRGVRKEQGCTWIEVEGKL 714



 Score =  199 bits (505), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 124/400 (31%), Positives = 214/400 (53%), Gaps = 23/400 (5%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L A S P+ L+          G + HA + K G   +  I   L+ +++K G++  A Q+
Sbjct: 169 LDACSSPAGLK---------LGKEFHAQVIKVGFVSDFRIGTALVSMYVKGGSMDGARQV 219

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           FD L +R +S +N MI GY K+G  E++  L  ++   G +P+  +F  IL   +     
Sbjct: 220 FDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRISFLSILDGCS----- 274

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
            P     G+ VHAQ +   +  D  + TAL+  Y+  G    AR VFD M  ++V+  T 
Sbjct: 275 TPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEGARRVFDKMKVRDVVSWTV 334

Query: 223 MISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKN 278
           MI G+     +EDA  +F     + ++ D + Y  +I   + S + +  A E+H Q+++ 
Sbjct: 335 MIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLS-LAREIHSQVVRA 393

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
            F  D+ + +ALV MYAKCG I DAR+VFD M +++V +W++MI  Y +NG   +A E F
Sbjct: 394 GFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVENGCGEEAFETF 453

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF-ESMERDYSMKPKMEHYACMVDLLG 397
            +M+   V+P+ VT++  L+ACGH G +D G EI+ ++++ D      + +   ++++  
Sbjct: 454 HLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQAIKADLVSHIPVGN--ALINMNV 511

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           + GS+E+A +++ E   + +   W  ++    LH +   A
Sbjct: 512 KHGSIERA-RYIFENMVQRDVVTWNVMIGGYSLHGNAREA 550



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 115/368 (31%), Positives = 194/368 (52%), Gaps = 12/368 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++  HI ++G + N      L+ LH  CG +  A Q FD +  +T+  +N +IAGY +
Sbjct: 80  GKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQ 139

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G V+E+ +L R++V     P   TF ++L A   C S  P    LG+  HAQ++K    
Sbjct: 140 LGHVKEAFALFRQMVDEAMEPSIITFLIVLDA---CSS--PAGLKLGKEFHAQVIKVGFV 194

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +D  + TALV  YVKGG    AR VFD + +++V     MI G+   G  E A ++F + 
Sbjct: 195 SDFRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRM 254

Query: 244 VEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            ++      + + ++++G S + E       VH Q +     +DV++ +AL+ MY  CG 
Sbjct: 255 QQEGFKPNRISFLSILDGCS-TPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGS 313

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I+ ARRVFD M+ ++V +WT MI GY +N N   A  LF  MQE  +QP+ +T++  ++A
Sbjct: 314 IEGARRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINA 373

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C  +  +   REI   + R       +     +V +  + G+++ A + V +   + +  
Sbjct: 374 CASSADLSLAREIHSQVVRA-GFGTDLLVDTALVHMYAKCGAIKDARQ-VFDAMSRRDVV 431

Query: 420 VWAALLSS 427
            W+A++ +
Sbjct: 432 SWSAMIGA 439



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 91/361 (25%), Positives = 159/361 (44%), Gaps = 50/361 (13%)

Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
            LG+ V   I++   + +      L+  +   G    AR  FD +  K V+   ++I+G+
Sbjct: 78  GLGKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGY 137

Query: 228 MSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFED 283
              G V++A  +FR+ V    E  I+ +  +++  S S    +   E H Q+IK  F  D
Sbjct: 138 AQLGHVKEAFALFRQMVDEAMEPSIITFLIVLDACS-SPAGLKLGKEFHAQVIKVGFVSD 196

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
            ++G+ALV MY K G +D AR+VFD + +++V T+  MI GY K+G+  +A +LF  MQ+
Sbjct: 197 FRIGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQ 256

Query: 344 CCVQPNYVTFLGALSACG-----------HA-----GLVDK------------------- 368
              +PN ++FL  L  C            HA     GLVD                    
Sbjct: 257 EGFKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVDDVRVATALIRMYMGCGSIEG 316

Query: 369 GREIFESME-RDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAAL 424
            R +F+ M+ RD      +  +  M+       ++E A      M E   +P+   +  +
Sbjct: 317 ARRVFDKMKVRD------VVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHI 370

Query: 425 LSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGV 484
           +++C    D+ +A    +++ +           AL +  A  G      ++ + M  R V
Sbjct: 371 INACASSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDV 430

Query: 485 L 485
           +
Sbjct: 431 V 431


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 161/437 (36%), Positives = 255/437 (58%), Gaps = 9/437 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           GL++H    K+  + N  ++  +L ++ KCGAL  A  +F+E+  R   ++N +IA + +
Sbjct: 332 GLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQ 391

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  E++LSL   ++ SG  PD +T+  +LKA   C     L  N G  +H +I+K  + 
Sbjct: 392 NGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKA---CAGWQAL--NCGMEIHNRIIKSRMG 446

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +  AL+D Y K G    A  + D + E+ V+   ++ISGF  Q   E+A++ F K 
Sbjct: 447 LDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKM 506

Query: 244 VEKDIVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           +E  +   N   A I     ++ T     ++H Q+IK     D  + S LVDMY+KCG +
Sbjct: 507 LEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNM 566

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
            D + +F+    ++  TW +M+ GY ++G   +AL++F  MQ   V+PN+ TFL  L AC
Sbjct: 567 QDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRAC 626

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
           GH GLV+KG   F SM  +Y + P++EHY+C+VD++GR+G + +AL+ +  MP + ++ +
Sbjct: 627 GHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVI 686

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W  LLS C++H +VE+A  AA  I +L   D   AYV LSN  A AG W+ VT+LR+ M+
Sbjct: 687 WRTLLSXCKIHGNVEVAEKAAYSILQLEPED-SAAYVLLSNIYANAGMWNEVTKLRKMMR 745

Query: 481 LRGVLKDTGCSWVGTES 497
             G+ K+ GCSW+  +S
Sbjct: 746 FNGLKKEPGCSWIEIKS 762



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 179/374 (47%), Gaps = 17/374 (4%)

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGALK-YAGQMFDELPQRTLSAYNYMIAGYLK 123
           L++H H  KT    +  I    L +++KC  L   + Q+F+ LP   L +YN +I GY +
Sbjct: 231 LQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYAR 290

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           + +  E+L + R L  SG   D  + S   +A    + ++      G  VH   +K   +
Sbjct: 291 SDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLE-----GLQVHGLSMKSLCQ 345

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
           ++  +  A++D Y K G    A +VF+ M+ ++ +   ++I+     G  E    +F   
Sbjct: 346 SNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWM 405

Query: 241 -RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            +  +E D   Y ++++  +   +     +E+H ++IK+    D  +G AL+DMY+KCG 
Sbjct: 406 LQSGMEPDEFTYGSVLKACA-GWQALNCGMEIHNRIIKSRMGLDSFVGIALIDMYSKCGM 464

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ++ A ++ D + ++ V +W ++I G+       +A + F  M E  V P+  T+   L  
Sbjct: 465 MEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDT 524

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C +   V+ G++I   + +   ++      + +VD+  + G+++    F L   + PN D
Sbjct: 525 CANLVTVELGKQIHAQIIKK-ELQSDAYISSTLVDMYSKCGNMQD---FQLIFEKAPNRD 580

Query: 420 --VWAALLSSCRLH 431
              W A++     H
Sbjct: 581 FVTWNAMVCGYAQH 594



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 102/475 (21%), Positives = 199/475 (41%), Gaps = 83/475 (17%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G + HA +  T  KP   ++  L+ +++KC  L +A ++FD +PQR   ++N M+ GY  
Sbjct: 61  GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGYAG 120

Query: 124 NGQVEESLSLVRKLVSSG---------------ERPDGYTFSMILKASTCCRSNVPLPRN 168
            G +  +  L   +  +G                  D  TF+++LK+ +    +      
Sbjct: 121 RGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDH-----G 175

Query: 169 LGRMVHAQILKCDVKADDVLYTALVDSYVK---------GGKTSYARI------------ 207
            G  +H   +K     D V  +AL+D Y K         GG   +  +            
Sbjct: 176 GGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGLELFKEMQKAGVGALQLHG 235

Query: 208 -VFDMMLEKNVICSTSMISGFMSQGFVED-AEEIFRKTVEKDIVVYNAMIEGYS------ 259
                    +V+  T+ +  +M    + D + ++F      ++  YNA+I GY+      
Sbjct: 236 HALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGI 295

Query: 260 ------------------ISIETARKA----------LEVHCQLIKNVFFEDVKLGSALV 291
                             +S+  A +A          L+VH   +K++   ++ + +A++
Sbjct: 296 EALGMFRLLQKSGLGLDEVSLSGAXRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAIL 355

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
           DMY KCG + +A  VF+ M  ++  +W ++I  + +NGN  + L LF  M +  ++P+  
Sbjct: 356 DMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEF 415

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA--CMVDLLGRAGSLEQALKFV 409
           T+   L AC     ++ G EI     R    +  ++ +    ++D+  + G +E+A K  
Sbjct: 416 TYGSVLKACAGWQALNCGMEIH---NRIIKSRMGLDSFVGIALIDMYSKCGMMEKAEKLH 472

Query: 410 LEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464
             + E+     W A++S   L    E A    +++ ++  +     Y  + +T A
Sbjct: 473 DRLAEQTVVS-WNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCA 526



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 76/358 (21%), Positives = 147/358 (41%), Gaps = 91/358 (25%)

Query: 148 TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARI 207
           TFS I +  +  ++  P     G+  HA+++  + K    +   L+  Y+K     +A  
Sbjct: 44  TFSHIFQECSDRKALCP-----GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFK 98

Query: 208 VFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-------------------RKTVEKDI 248
           VFD M +++ +   +M+ G+  +G +  A+++F                   R     D 
Sbjct: 99  VFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDR 158

Query: 249 VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG-KIDDAR--- 304
             +  +++  S S+E     +++H   +K  F  DV  GSAL+DMYAKC  + DD R   
Sbjct: 159 TTFAVVLKSCS-SLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCCVQNDDLRGGL 217

Query: 305 --------------------------------------------------RVFDHMQQKN 314
                                                             ++F+ +   N
Sbjct: 218 ELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDCSNQLFNSLPNHN 277

Query: 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374
           + ++ ++I GY ++    +AL +F ++Q+  +  + V+  GA  AC     V KG    E
Sbjct: 278 LQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAXRACA----VIKGD--LE 331

Query: 375 SME-RDYSMKPKMEHYAC----MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
            ++    SMK   +   C    ++D+ G+ G+L +A     EM  + ++  W A++++
Sbjct: 332 GLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSR-DAVSWNAIIAA 388


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 159/436 (36%), Positives = 255/436 (58%), Gaps = 15/436 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IHA I K G   +  +   L+ ++  CG ++ A ++FDE+ +R +  +N M AGY K
Sbjct: 143 GEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTK 202

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G  EE + L  +++    R D  T   +L   T C     L   LG  ++  + +  +K
Sbjct: 203 SGNWEEVVKLFHEMLELDIRFDEVTLVSVL---TACGRLADL--ELGEWINRYVEEKGLK 257

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +  L T+LVD Y K G+   AR +FD M  ++V+  ++MISG+       +A ++F + 
Sbjct: 258 GNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEM 317

Query: 244 VEKDI----VVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
            + +I    +   +++   ++  ++ET +    VH  + K      V LG+AL+D YAKC
Sbjct: 318 QKANIDPNEITMVSILSSCAVLGALETGKW---VHFFIKKKRMKLTVTLGTALMDFYAKC 374

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G ++ +  VF  M  KNV +WT +I G   NG   +ALE F +M E  V+PN VTF+G L
Sbjct: 375 GSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVL 434

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           SAC HAGLVD+GR++F SM RD+ ++P++EHY CMVD+LGRAG +E+A +F+  MP +PN
Sbjct: 435 SACSHAGLVDEGRDLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPN 494

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
           + +W  LL+SC++H +VE+   +  ++  L      G Y+ LSN  A+ G+W+   ++R 
Sbjct: 495 AVIWRTLLASCKVHKNVEIGEESLKQLIILEPT-HSGDYILLSNIYASVGRWEDALKVRG 553

Query: 478 KMKLRGVLKDTGCSWV 493
           +MK +G+ K  GCS +
Sbjct: 554 EMKEKGIKKTPGCSLI 569



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/367 (30%), Positives = 189/367 (51%), Gaps = 16/367 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLL--ILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           +IHAH+ KT +     ++  LL     L   ++ YA  +F ++ +    AYN MI G+  
Sbjct: 42  EIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTL 101

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
                E++ L +++  +  +PD +TF  ILK   C R       + G  +HA I+KC   
Sbjct: 102 KQSPHEAILLFKEMHENSVQPDEFTFPCILK--VCSRLQA---LSEGEQIHALIMKCGFG 156

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +   +   L+  Y   G+   AR VFD M E+NV    SM +G+   G  E+  ++F + 
Sbjct: 157 SHGFVKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEM 216

Query: 244 VEKDIVVYNAMIEGYSISIETARKA-LEVHCQLIKNVFFEDVK----LGSALVDMYAKCG 298
           +E DI      +   S+     R A LE+   + + V  + +K    L ++LVDMYAKCG
Sbjct: 217 LELDIRFDEVTL--VSVLTACGRLADLELGEWINRYVEEKGLKGNPTLITSLVDMYAKCG 274

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           ++D ARR+FD M +++V  W++MI GY +     +AL+LF  MQ+  + PN +T +  LS
Sbjct: 275 QVDTARRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILS 334

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           +C   G ++ G+ +   +++   MK  +     ++D   + GS+E +++   +MP K N 
Sbjct: 335 SCAVLGALETGKWVHFFIKKK-RMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVK-NV 392

Query: 419 DVWAALL 425
             W  L+
Sbjct: 393 LSWTVLI 399


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  296 bits (757), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 161/437 (36%), Positives = 255/437 (58%), Gaps = 9/437 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           GL++H    K+  + N  ++  +L ++ KCGAL  A  +F+E+  R   ++N +IA + +
Sbjct: 395 GLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQ 454

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  E++LSL   ++ SG  PD +T+  +LKA   C     L  N G  +H +I+K  + 
Sbjct: 455 NGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKA---CAGWQAL--NCGMEIHNRIIKSRLG 509

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +  AL+D Y K G    A  + D + E+ V+   ++ISGF  Q   E+A++ F K 
Sbjct: 510 LDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKM 569

Query: 244 VEKDIVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           +E  +   N   A I     ++ T     ++H Q+IK     D  + S LVDMY+KCG +
Sbjct: 570 LEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNM 629

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
            D + +F+    ++  TW +M+ GY ++G   +AL++F  MQ   V+PN+ TFL  L AC
Sbjct: 630 QDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRAC 689

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
           GH GLV+KG   F SM  +Y + P++EHY+C+VD++GR+G + +AL+ +  MP + ++ +
Sbjct: 690 GHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVI 749

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W  LLS C++H +VE+A  AA  I +L   D   AYV LSN  A AG W+ VT+LR+ M+
Sbjct: 750 WRTLLSICKIHGNVEVAEKAAYSILQLEPED-SAAYVLLSNIYANAGMWNEVTKLRKMMR 808

Query: 481 LRGVLKDTGCSWVGTES 497
             G+ K+ GCSW+  +S
Sbjct: 809 FNGLKKEPGCSWIEIKS 825



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/406 (23%), Positives = 190/406 (46%), Gaps = 14/406 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH    K G   +      LL ++ KC  L  + Q F  +P++   +++ +IAG ++
Sbjct: 193 GIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQ 252

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N  +   L L +++  +G      TF+ + ++   C     L   LG  +H   LK D  
Sbjct: 253 NDDLRGGLELFKEMQKAGVGVSQSTFASVFRS---CAGLSAL--RLGSQLHGHALKTDFG 307

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D V+ TA +D Y+K    S A+ +F+ +   N+    ++I G+       +A  +FR  
Sbjct: 308 TDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLL 367

Query: 244 VEKDIVVYNAMIEGY---SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
            +  + +    + G       I+   + L+VH   +K++   ++ + +A++DMY KCG +
Sbjct: 368 QKSGLGLDEVSLSGAFRACAVIKGDLEGLQVHGLSMKSLCQSNICVANAILDMYGKCGAL 427

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
            +A  VF+ M  ++  +W ++I  + +NGN  + L LF  M +  ++P+  T+   L AC
Sbjct: 428 VEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKAC 487

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYA--CMVDLLGRAGSLEQALKFVLEMPEKPNS 418
                ++ G EI     R    +  ++ +    ++D+  + G +E+A K    + E+   
Sbjct: 488 AGWQALNCGMEIH---NRIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVV 544

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464
             W A++S   L    E A    +++ ++  +     Y  + +T A
Sbjct: 545 S-WNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCA 589



 Score =  120 bits (301), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 187/403 (46%), Gaps = 51/403 (12%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYM------ 117
           G + HA +  T  KP   ++  L+ +++KC  L++A ++FD +PQR   ++N M      
Sbjct: 61  GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAG 120

Query: 118 -------------------------IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
                                    I+GYL NG   + + +  ++   G   D  TF+++
Sbjct: 121 RGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVV 180

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           LK+ +    +       G  +H   +K     D V  +AL+D Y K  K   +   F  M
Sbjct: 181 LKSCSSLEDH-----GGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSM 235

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS---IETARKAL 269
            EKN +  +++I+G +    +    E+F++  +  + V  +       S   +   R   
Sbjct: 236 PEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGS 295

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
           ++H   +K  F  DV +G+A +DMY KC  + DA+++F+ +   N+ ++ ++I GY ++ 
Sbjct: 296 QLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSD 355

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME-RDYSMKPKMEH 388
              +AL +F ++Q+  +  + V+  GA  AC     V KG    E ++    SMK   + 
Sbjct: 356 KGIEALGMFRLLQKSGLGLDEVSLSGAFRACA----VIKGD--LEGLQVHGLSMKSLCQS 409

Query: 389 YAC----MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
             C    ++D+ G+ G+L +A     EM  + ++  W A++++
Sbjct: 410 NICVANAILDMYGKCGALVEACLVFEEMVSR-DAVSWNAIIAA 451



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 118/252 (46%), Gaps = 41/252 (16%)

Query: 148 TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARI 207
           TFS I +  +  ++  P     G+  HA+++  + K    +   L+  Y+K     +A  
Sbjct: 44  TFSHIFQECSDRKALCP-----GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFK 98

Query: 208 VFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY--------- 258
           VFD M +++ +   +M+ G+  +G +  A+++F    E+D+V +N++I GY         
Sbjct: 99  VFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKV 158

Query: 259 -------------------------SISIETARKALEVHCQLIKNVFFEDVKLGSALVDM 293
                                      S+E     +++H   +K  F  DV  GSAL+DM
Sbjct: 159 IDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDM 218

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           YAKC K+D + + F  M +KN  +W+++I G  +N +    LELF  MQ+  V  +  TF
Sbjct: 219 YAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTF 278

Query: 354 LGALSACGHAGL 365
                +C  AGL
Sbjct: 279 ASVFRSC--AGL 288


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 155/439 (35%), Positives = 267/439 (60%), Gaps = 10/439 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+++HA+  K G+  N +I   L+ ++ KC  +KY G  F+ +P++ L ++  +IAGY +
Sbjct: 371 GMEVHAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQ 430

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N    ++L+L+RK+       D      IL A +  +S       L + +H  +LK  + 
Sbjct: 431 NECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKS-----EKLIKEIHGYVLKGGL- 484

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           AD ++  A+V+ Y +     YAR VF+ +  K+++  TSMI+  +  G   +A E+F   
Sbjct: 485 ADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSL 544

Query: 244 VEKDI---VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           +E +I   ++    +   + ++ + +K  E+H  LI+  FF +  + ++LVDMYA+CG +
Sbjct: 545 IETNIEPDLITLVSVLYAAAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDMYARCGTM 604

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           ++AR +F++++Q+++  WTSMI+  G +G    A++LF  M +  V P+++TFL  L AC
Sbjct: 605 ENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITFLALLYAC 664

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            H+GLV +G++ FE M+ +Y ++P  EHYAC+VDLL R+ SLE+A  FV  MP +P+++V
Sbjct: 665 SHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMPIEPSAEV 724

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W ALL +CR+H + ++  +AA ++ +LN  +  G YV +SNT AA G+W+ V E+R  MK
Sbjct: 725 WCALLGACRIHSNNDLGEVAAKKLLQLN-TENSGNYVLVSNTFAADGRWNDVEEVRSIMK 783

Query: 481 LRGVLKDTGCSWVGTESGL 499
              + K  GCSW+  E+ +
Sbjct: 784 GNKLKKKPGCSWIEVENKI 802



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 110/424 (25%), Positives = 197/424 (46%), Gaps = 44/424 (10%)

Query: 23  VPPNQTFPPKLQNYDSL-----------SNPL-TATSLP------SALQHYINSDTPFYG 64
           +PPN T P       SL           ++PL T T  P       AL+   +      G
Sbjct: 6   LPPNHTLPTFSHRPISLKEAFQSLTHFFTDPLPTTTRFPLQQAYSQALELCASHKALPQG 65

Query: 65  LKIHAHITKT-GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
            ++HAH  KT     +  +  K + ++ KCG+   A ++FD++ +RT+  +N MI   + 
Sbjct: 66  QQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVS 125

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G+  E++ L +++   G   D +TF  +LKA    +      R LG  +H   +KC   
Sbjct: 126 AGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKE-----RRLGCEIHGVAVKCGYG 180

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFD--MMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
               +  AL+  Y K G    AR++FD  +M + + +   S+IS  + +G   +A  +FR
Sbjct: 181 GFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFR 240

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALE----------VHCQLIKNVFFEDVKLGSALV 291
           +  E         +E  + +  +A +A E          +H  ++K+  F DV + +AL+
Sbjct: 241 RMQE-------VGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALI 293

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
            MYA CG+++DA RVF  M  K+  +W +++ G  +N   + A+  F  MQ+   +P+ V
Sbjct: 294 AMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQV 353

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
           + L  ++A G +  +  G E+  +    + +   M     ++D+ G+   ++        
Sbjct: 354 SVLNMIAASGRSANLLAGMEV-HAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFEY 412

Query: 412 MPEK 415
           MPEK
Sbjct: 413 MPEK 416


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 167/453 (36%), Positives = 250/453 (55%), Gaps = 12/453 (2%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           +T+  S L  ++++    +  ++H H  + G+  +  +    + ++++CG++  A  +FD
Sbjct: 335 STTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFD 394

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP 164
           +L  R ++ +N MI G  +     E+LSL  ++   G  PD  TF  IL A+    +   
Sbjct: 395 KLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEA--- 451

Query: 165 LPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
                 + VH+  +   +  D  +  ALV  Y K G T YA+ VFD M+E+NV   T MI
Sbjct: 452 --LEWVKEVHSYAIDAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMI 508

Query: 225 SGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVF 280
           SG    G   +A  +F    R+ +  D   Y +++   + S        EVH   +    
Sbjct: 509 SGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACA-STGALEWVKEVHSHAVNAGL 567

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             D+++G+ALV MYAKCG +DDARRVFD M +++V++WT MI G  ++G    AL+LF  
Sbjct: 568 VSDLRVGNALVHMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVK 627

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           M+    +PN  +F+  LSAC HAGLVD+GR  F S+ +DY ++P MEHY CMVDLLGRAG
Sbjct: 628 MKLEGFKPNGYSFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAG 687

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
            LE+A  F+L MP +P    W ALL +C  + ++EMA  AA E  KL        YV LS
Sbjct: 688 QLEEAKHFILNMPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKS-ASTYVLLS 746

Query: 461 NTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           N  AA G W+    +R  M+ RG+ K+ G SW+
Sbjct: 747 NIYAATGNWEQKLLVRSMMQRRGIRKEPGRSWI 779



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 187/370 (50%), Gaps = 12/370 (3%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G KIHAHI ++G + +  +   L+ +++KCG++  A  +FD++ +R + ++  MI G  
Sbjct: 48  WGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLA 107

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
             G+ +E+     ++   G  P+ YT+  IL A+    +         + VH+  +   +
Sbjct: 108 HYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGA-----LEWVKEVHSHAVNAGL 162

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-- 240
             D  +  ALV  Y K G    AR+VFD M+E+++   T MI G    G  ++A  +F  
Sbjct: 163 ALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQ 222

Query: 241 --RKTVEKDIVVYNAMIEGYSISIETARKAL-EVHCQLIKNVFFEDVKLGSALVDMYAKC 297
             R     ++  Y +++   +I+   A + + EVH    K  F  D+++G+AL+ MYAKC
Sbjct: 223 MERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKC 282

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G IDDAR VFD M  ++V +W +MI G  +NG  ++A  +F  MQ+    P+  T+L  L
Sbjct: 283 GSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLL 342

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           +     G  +  +E+ +    +  +   +   +  V +  R GS++ A + + +     N
Sbjct: 343 NTHVSTGAWEWVKEVHKH-AVEVGLVSDLRVGSAFVHMYIRCGSIDDA-QLIFDKLAVRN 400

Query: 418 SDVWAALLSS 427
              W A++  
Sbjct: 401 VTTWNAMIGG 410



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 108/381 (28%), Positives = 189/381 (49%), Gaps = 22/381 (5%)

Query: 117 MIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
           MI GY + G  E+++ +  ++   G +P+  T+  ILKA  CC    P+    G+ +HA 
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKA--CCS---PVSLKWGKKIHAH 55

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
           I++   ++D  + TALV+ YVK G    A+++FD M+E+NVI  T MI G    G  ++A
Sbjct: 56  IIQSGFQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEA 115

Query: 237 EEIFRKTVEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVFFEDVKLGSALVD 292
              F + ++++  + N+      ++   +  AL    EVH   +      D+++G+ALV 
Sbjct: 116 FHRFLQ-MQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVH 174

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           MYAK G IDDAR VFD M ++++F+WT MI G  ++G   +A  LF  M+     PN  T
Sbjct: 175 MYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTT 234

Query: 353 FLGAL--SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410
           +L  L  SA    G ++  +E+ +   +       +     ++ +  + GS++ A + V 
Sbjct: 235 YLSILNASAITSTGALEWVKEVHKHAGKA-GFISDLRVGNALIHMYAKCGSIDDA-RLVF 292

Query: 411 EMPEKPNSDVWAALLSSCRL----HDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
           +     +   W A++         H+   +      E F  ++      Y++L NT  + 
Sbjct: 293 DGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDST----TYLSLLNTHVST 348

Query: 467 GKWDSVTELREKMKLRGVLKD 487
           G W+ V E+ +     G++ D
Sbjct: 349 GAWEWVKEVHKHAVEVGLVSD 369


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  295 bits (754), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 161/480 (33%), Positives = 267/480 (55%), Gaps = 53/480 (11%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH  I+K+    +  +   L+  + KCG +  A ++FD + ++ + ++N +I  Y +
Sbjct: 175 GAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQ 234

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD-V 182
           NG   E+L    ++   G +PD  T + ++ A   C +        G  +HA+++K D  
Sbjct: 235 NGPAIEALEAFGRMTELGFKPDEVTLASVVSA---CATLAAFKE--GVQIHARVVKSDKF 289

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           + D +L  ALVD Y K G+ + AR VFD M  +N +  T+M+SG+     V+ A  +F  
Sbjct: 290 RNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASVKAARSMFAT 349

Query: 243 TVEKDIVVYNAMIEGYS-------------------------------------ISIETA 265
             +KDIV +NA+I GY+                                       +E  
Sbjct: 350 IKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNASANLADLELG 409

Query: 266 RKALEVHCQLIKNVF-FE-----DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWT 319
           R+A   H  ++K+ F F+     D+ +G++L+DMY KCG +++  RVF++M +K+  +W 
Sbjct: 410 RQA---HSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWN 466

Query: 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD 379
           +MI GY +NG   +ALELF  M E   +P++VT +G L AC HAGLV++GR  F SM ++
Sbjct: 467 TMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCACSHAGLVEEGRRYFFSMTKE 526

Query: 380 YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANI 439
           + + P  +HY CMVDLLGRAG LE+A   +  MP++P++ VW++LLS+C++H ++ +   
Sbjct: 527 HGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSACKVHRNITLGKY 586

Query: 440 AANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
            A +IF+++     G YV L+N  +  G+W     +R+ M+ RGV+K  GCSW+  +S +
Sbjct: 587 VAEKIFEIDPTS-SGPYVLLANMYSELGRWGDAVSVRKLMRRRGVVKQPGCSWIDIQSNV 645



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 190/427 (44%), Gaps = 86/427 (20%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL-------------------- 106
           +H  + +T       I  +L+ ++ KCG L YA ++FD +                    
Sbjct: 46  VHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSERNVFSFNSIISTLMRWGF 105

Query: 107 -----------PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
                      P++   ++N MIAG+ ++ + EE+L    ++       + Y+F   L  
Sbjct: 106 VDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGL-- 163

Query: 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
           S C R        LG  +H  I K     D  + + L+D Y K G    AR VFD M EK
Sbjct: 164 SACSRLK---DLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEK 220

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVE---KDIVVYNAMIEGYSISIETARKALEVH 272
           NV+    +I+ +   G   +A E F +  E   K   V  A +     ++   ++ +++H
Sbjct: 221 NVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIH 280

Query: 273 CQLIK-NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM--------------------- 310
            +++K + F  D+ LG+ALVDMYAKCG++++AR VFD M                     
Sbjct: 281 ARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVSETTMVSGYAKSASV 340

Query: 311 ----------QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
                     +QK++ +W ++I GY +NG   +AL LF M++   V P + TF   L+A 
Sbjct: 341 KAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESVCPTHYTFGNLLNAS 400

Query: 361 GHAGLVDKGREI----------FESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410
            +   ++ GR+           F+S E     +P +     ++D+  + GS+E+ L+   
Sbjct: 401 ANLADLELGRQAHSHVVKHGFRFQSGE-----EPDIFVGNSLIDMYMKCGSVEEGLRVFE 455

Query: 411 EMPEKPN 417
            M EK +
Sbjct: 456 NMVEKDH 462



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/278 (28%), Positives = 129/278 (46%), Gaps = 34/278 (12%)

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
            R VH ++++     +  +   L+D Y K G   YAR VFD M E+NV    S+IS  M 
Sbjct: 43  ARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSERNVFSFNSIISTLMR 102

Query: 230 QGFVEDAEEIFRKTVEKDIVVYNAMIEGYS------------------------------ 259
            GFV+++  +F    EKD   +N+MI G++                              
Sbjct: 103 WGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSG 162

Query: 260 ----ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
                 ++  +   ++H  + K+ +  DV +GS L+D Y+KCG +  ARRVFD M++KNV
Sbjct: 163 LSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVFDGMEEKNV 222

Query: 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES 375
            +W  +I  Y +NG   +ALE F  M E   +P+ VT    +SAC       +G +I   
Sbjct: 223 VSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACATLAAFKEGVQIHAR 282

Query: 376 MERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           + +    +  +     +VD+  + G + +A      MP
Sbjct: 283 VVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMP 320



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 121/308 (39%), Gaps = 93/308 (30%)

Query: 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF--- 316
           + + ++R A  VH +LI+  F E+V + + L+D+Y KCG +D AR+VFD M ++NVF   
Sbjct: 35  VKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVFDRMSERNVFSFN 94

Query: 317 ----------------------------TWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348
                                       +W SMI G+ ++    +AL+ F  M       
Sbjct: 95  SIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVRMHRDDFVL 154

Query: 349 NYVTFLGALSACGH-----------------------------------AGLVDKGREIF 373
           N  +F   LSAC                                      GLV   R +F
Sbjct: 155 NDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGLVGCARRVF 214

Query: 374 ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSC-- 428
           + ME     +  +  + C++    + G   +AL+    M E   KP+    A+++S+C  
Sbjct: 215 DGME-----EKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSACAT 269

Query: 429 --------RLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
                   ++H  V  ++   N++   N         AL +  A  G+ +    + ++M 
Sbjct: 270 LAAFKEGVQIHARVVKSDKFRNDLILGN---------ALVDMYAKCGRVNEARCVFDRMP 320

Query: 481 LRGVLKDT 488
           +R  + +T
Sbjct: 321 VRNAVSET 328



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 68/162 (41%), Gaps = 19/162 (11%)

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ----KNVFTWTSMIDGYGKNGNPNQAL 335
           FF D    + L+D+  K     DAR V   + Q    + VF    +ID YGK G  + A 
Sbjct: 20  FFTDSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYAR 79

Query: 336 ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVD 394
           ++F  M E     N  +F   +S     G VD+   +F  M E+D         +  M+ 
Sbjct: 80  KVFDRMSE----RNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQC------SWNSMIA 129

Query: 395 LLGRAGSLEQALKFVLEMPEKP---NSDVWAALLSSC-RLHD 432
              +    E+AL + + M       N   + + LS+C RL D
Sbjct: 130 GFAQHDRFEEALDWFVRMHRDDFVLNDYSFGSGLSACSRLKD 171


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  294 bits (753), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 161/438 (36%), Positives = 256/438 (58%), Gaps = 18/438 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD--ELPQRTLSAYNYMIAGY 121
           G  +HA + + G + +  +   L+ L+ KC  L  A  +F+   LP+RT+ ++  +++ Y
Sbjct: 138 GRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAY 197

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            +NG+  E+L +  ++     +PD      +L A TC +         GR +HA ++K  
Sbjct: 198 AQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQD-----LEQGRSIHASVMKMG 252

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           ++ +  L  +L   Y K G+ + A+I+FD M   N+I   +MISG+   GF +DA ++F 
Sbjct: 253 LETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFH 312

Query: 242 KTVEKD-----IVVYNAMIEGYSI-SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
           + + KD     I + +A+     + S+E AR   E    + ++ + +DV + SAL+DM+A
Sbjct: 313 EMINKDVRPDTISITSAISACAQVGSLEQARWMDEY---VSRSDYRDDVFISSALIDMFA 369

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KCG ++ AR VFD    ++V  W++MI GYG +G   +A+ L+  M+   V PN VTFLG
Sbjct: 370 KCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLG 429

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            L AC H+G+V +G   F  M  D+ + P+ +HYAC++DLLGRAG L+QA + +  MP +
Sbjct: 430 LLIACNHSGMVREGWWFFNRMA-DHKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQ 488

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
           P   VW ALLS+C+ H  VE+   AA ++F ++ ++  G YV LSN  AAA  WD V E+
Sbjct: 489 PGVTVWGALLSACKKHRHVELGKYAAQQLFSIDPSN-TGHYVQLSNLYAAARLWDRVAEV 547

Query: 476 REKMKLRGVLKDTGCSWV 493
           R +MK +G+ KD GCSWV
Sbjct: 548 RVRMKEKGLNKDVGCSWV 565



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 106/379 (27%), Positives = 195/379 (51%), Gaps = 16/379 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IHA +   G++ +  +  KL+      G + +A Q+FD+LP+  +  +N +I GY +N 
Sbjct: 39  QIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNN 98

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             +++L +  K+  +   PD +TF  +LKA   C     L   +GR VHAQ+ +   +AD
Sbjct: 99  HFQDALLMYSKMQLARVSPDSFTFPHLLKA---CGGLSHL--QMGRFVHAQVFRLGFEAD 153

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDM--MLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
             +   L+  Y K  +   AR VF+   + E+ ++  T+++S +   G   +A EIF + 
Sbjct: 154 VFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQM 213

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               V+ D V   +++  ++  ++   +   +H  ++K     +  L  +L  MYAKCG+
Sbjct: 214 RKMDVKPDCVALVSVLNAFT-CLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKCGQ 272

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +  A+ +FD M+  N+  W +MI GY KNG    A++LF  M    V+P+ ++   A+SA
Sbjct: 273 VATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAISA 332

Query: 360 CGHAGLVDKGREIFESMER-DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           C   G +++ R + E + R DY  +  +   + ++D+  + GS+E A + V +     + 
Sbjct: 333 CAQVGSLEQARWMDEYVSRSDY--RDDVFISSALIDMFAKCGSVECA-RSVFDRTLDRDV 389

Query: 419 DVWAALLSSCRLHDDVEMA 437
            VW+A++    LH     A
Sbjct: 390 VVWSAMIVGYGLHGQAREA 408



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 130/263 (49%), Gaps = 11/263 (4%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           R +HA++L   ++    L T L+ +    G  ++AR VFD +    V    ++I G+   
Sbjct: 38  RQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRN 97

Query: 231 GFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
              +DA  ++ K     V  D   +  +++     +   +    VH Q+ +  F  DV +
Sbjct: 98  NHFQDALLMYSKMQLARVSPDSFTFPHLLKACG-GLSHLQMGRFVHAQVFRLGFEADVFV 156

Query: 287 GSALVDMYAKCGKIDDARRVFDH--MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
            + L+ +YAKC ++  AR VF+   + ++ + +WT+++  Y +NG P +ALE+F  M++ 
Sbjct: 157 QNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKM 216

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFES-MERDYSMKPKMEHYACMVDLLGRAGSLE 403
            V+P+ V  +  L+A      +++GR I  S M+     +P +     +  +  + G + 
Sbjct: 217 DVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDL--LISLNTMYAKCGQVA 274

Query: 404 QALKFVLEMPEKPNSDVWAALLS 426
            A K + +  + PN  +W A++S
Sbjct: 275 TA-KILFDKMKSPNLILWNAMIS 296


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  294 bits (752), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 152/439 (34%), Positives = 261/439 (59%), Gaps = 15/439 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH +  ++G++ +  +   L+ ++ KCG +  A ++F+ +P R ++++N +I GY  
Sbjct: 240 GKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSL 299

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N Q  E+L+   ++   G +P+  T   +L A   C     L +  G+ +H   ++   +
Sbjct: 300 NSQHHEALAFFNRMQVRGIKPNSITMVSVLPA---CAHLFALEQ--GQQIHGYAIRSGFE 354

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           ++DV+  ALV+ Y K G  + A  +F+ M +KNV+   ++ISG+   G   +A  +F + 
Sbjct: 355 SNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEM 414

Query: 244 VEKDI------VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
             + I      +V       + +++E  +   ++H   I++ F  +V +G+ LVD+YAKC
Sbjct: 415 QAQGIKPDSFAIVSVLPACAHFLALEQGK---QIHGYTIRSGFESNVVVGTGLVDIYAKC 471

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G ++ A+++F+ M +++V +WT+MI  YG +G+   AL LF  MQE   + +++ F   L
Sbjct: 472 GNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKLDHIAFTAIL 531

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           +AC HAGLVD+G + F+ M+ DY + PK+EHYAC+VDLLGRAG L++A   +  M  +P+
Sbjct: 532 TACSHAGLVDQGLQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANGIIKNMSLEPD 591

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
           ++VW ALL +CR+H ++E+   AA  +F+L+  D  G YV LSN  A A +W+ V +LR+
Sbjct: 592 ANVWGALLGACRIHCNIELGEQAAKHLFELDP-DNAGYYVLLSNIYAEAQRWEDVAKLRK 650

Query: 478 KMKLRGVLKDTGCSWVGTE 496
            MK +GV K  GCS V   
Sbjct: 651 MMKEKGVKKQPGCSVVAVH 669



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/383 (26%), Positives = 198/383 (51%), Gaps = 22/383 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G K+H  I   G + +  +   L  ++ KCG+L+ A Q+FD +P+R + ++N +IAGY +
Sbjct: 139 GRKVHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQ 198

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NGQ  E+L+L  ++  +G +P+  T   ++     C   + L +  G+ +H   ++  ++
Sbjct: 199 NGQPYEALALFSEMQVNGIKPNSSTLVSVMPV---CAHLLALEQ--GKQIHCYAIRSGIE 253

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +D ++   LV+ Y K G  + A  +F+ M  ++V    ++I G+       +A   F + 
Sbjct: 254 SDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRM 313

Query: 244 VEKDI---VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
             + I    +    +      +    +  ++H   I++ F  +  +G+ALV+MYAKCG +
Sbjct: 314 QVRGIKPNSITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNV 373

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           + A ++F+ M +KNV  W ++I GY ++G+P++AL LF  MQ   ++P+    +  L AC
Sbjct: 374 NSAYKLFERMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPAC 433

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYAC----MVDLLGRAGSLEQALKFVLEMPEKP 416
            H   +++G++I       Y+++   E        +VD+  + G++  A K    MPE+ 
Sbjct: 434 AHFLALEQGKQI-----HGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQ- 487

Query: 417 NSDV--WAALLSSCRLHDDVEMA 437
             DV  W  ++ +  +H   E A
Sbjct: 488 --DVVSWTTMILAYGIHGHGEDA 508



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 165/324 (50%), Gaps = 24/324 (7%)

Query: 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQI 177
           I GY+KNG   ++L L  ++  +G  PD   F  ++KA   C S   L    GR VH  I
Sbjct: 92  IIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKA---CGSQSDL--QAGRKVHEDI 146

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
           +    ++D ++ TAL   Y K G    AR VFD M +++V+   ++I+G+   G   +A 
Sbjct: 147 IARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEAL 206

Query: 238 EIFRKTVEKDI------VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALV 291
            +F +     I      +V    +  + +++E  +   ++HC  I++    DV + + LV
Sbjct: 207 ALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGK---QIHCYAIRSGIESDVLVVNGLV 263

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
           +MYAKCG ++ A ++F+ M  ++V +W ++I GY  N   ++AL  F  MQ   ++PN +
Sbjct: 264 NMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSI 323

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY----ACMVDLLGRAGSLEQALK 407
           T +  L AC H   +++G++I       Y+++   E        +V++  + G++  A K
Sbjct: 324 TMVSVLPACAHLFALEQGQQI-----HGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYK 378

Query: 408 FVLEMPEKPNSDVWAALLSSCRLH 431
               MP+K N   W A++S    H
Sbjct: 379 LFERMPKK-NVVAWNAIISGYSQH 401



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 117/228 (51%), Gaps = 19/228 (8%)

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIE--GYSISIETAR 266
           +  N +     I G++  GF   A  ++    R  +  D +V+ ++I+  G    ++  R
Sbjct: 81  IRNNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGR 140

Query: 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
           K   VH  +I   F  DV +G+AL  MY KCG +++AR+VFD M +++V +W ++I GY 
Sbjct: 141 K---VHEDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYS 197

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM 386
           +NG P +AL LF  MQ   ++PN  T +  +  C H   +++G++I       Y+++  +
Sbjct: 198 QNGQPYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQI-----HCYAIRSGI 252

Query: 387 EHYAC----MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRL 430
           E        +V++  + G++  A K    MP +  +  W A++    L
Sbjct: 253 ESDVLVVNGLVNMYAKCGNVNTAHKLFERMPIRDVAS-WNAIIGGYSL 299


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  294 bits (752), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 156/458 (34%), Positives = 269/458 (58%), Gaps = 14/458 (3%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           T +S P A++   +    F G + H      G + +  +S  L++++  CG L+ A ++F
Sbjct: 75  TRSSFPCAIKACSSLLDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVF 134

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF----SMILKASTCC 159
           DE+P+R + ++  MI GY  NG   +++SL + L+      D   F     M+   S C 
Sbjct: 135 DEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACS 194

Query: 160 RSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK--TSYARIVFDMMLEKNV 217
           R      + L   +H+ ++K        +   L+D+Y KGG+   + AR +FD +++K+ 
Sbjct: 195 R---VAAKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDR 251

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV----HC 273
           +   S++S +   G   +A ++FR+ +++ +V +N +     +   +   AL +    H 
Sbjct: 252 VSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHD 311

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
           Q+I+    +DV +G++++DMY KCG+++ AR  FD M+ KNV +WT+MI GYG +G+  +
Sbjct: 312 QVIRMGLEDDVIVGTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAK 371

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMV 393
           ALELF  M +  V+PNY+TF+  L+AC HAGL D G   F +M+  + ++P +EHY CMV
Sbjct: 372 ALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMV 431

Query: 394 DLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRP 453
           DLLGRAG L++A   + +M  +P+S +W++LL++CR+H +VE+A I+   +F+L+ ++  
Sbjct: 432 DLLGRAGFLQKAYDLIQKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPSN-C 490

Query: 454 GAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
           G Y+ LS+  A +G+W  V  +R  MK RG++K  G S
Sbjct: 491 GYYMLLSHIYADSGRWKDVERVRMTMKNRGLVKPPGFS 528



 Score = 41.6 bits (96), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 2/117 (1%)

Query: 309 HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDK 368
           ++ + +VF+W S+I    ++G+  +AL  F  M++  + P   +F  A+ AC     +  
Sbjct: 35  YVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFS 94

Query: 369 GREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
           G++  +     +  +  +   + ++ +    G LE A K   E+P K N   W +++
Sbjct: 95  GKQTHQQAFV-FGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP-KRNIVSWTSMI 149


>gi|255578965|ref|XP_002530335.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
 gi|223530139|gb|EEF32051.1| Bipolar kinesin KRP-130, putative [Ricinus communis]
          Length = 1530

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 157/436 (36%), Positives = 252/436 (57%), Gaps = 10/436 (2%)

Query: 66   KIHAHITKTGV-KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
            ++HA IT   V   N  ++ KLL +++    L  A  +FDE+PQ+   +++ MI G++K 
Sbjct: 1100 QLHALITTNSVLYNNLTVANKLLYVYVHHKCLTDAYALFDEMPQKNPVSWSIMIGGFVKV 1159

Query: 125  GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
            G+  +     ++L+ +G +PD YT   ++KA   CR  V L  ++GR++H  +LK  +  
Sbjct: 1160 GEFMQCYKTFKELIRNGVQPDNYTLPFVIKA---CRDTVAL--DMGRLIHCVVLKYGLHL 1214

Query: 185  DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
            D  +  ALVD Y K      A+++FD+M  K+++  T MI G+   G  +++  +F    
Sbjct: 1215 DHFVCAALVDMYAKCKVIEDAKLLFDVMPSKDLVTWTVMIGGYAECGNAKESLVLFDHLR 1274

Query: 245  EKDIV---VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
            E+  V   +    I      +    KA  VH  + +N F  DV LG+A++DMYAKCG +D
Sbjct: 1275 EEGFVPDKIAMVSIVNACAKLGAMNKARFVHEYVNRNRFSLDVILGTAMIDMYAKCGDVD 1334

Query: 302  DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
             AR +FD+M  KNV +W++MI  YG +G   +ALELF MM    + PN +TF+  L AC 
Sbjct: 1335 SAREIFDNMHHKNVISWSAMIAAYGYHGQGKKALELFPMMLSSGILPNNITFVSLLYACS 1394

Query: 362  HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
            HAGLV+ G  +   M   + ++P ++H+ CMVDLLGRAG L +A +F+  M  + +  +W
Sbjct: 1395 HAGLVEDGLTLLSLMWESFGVRPDIKHHTCMVDLLGRAGQLTEAFRFIENMTVEKDEGLW 1454

Query: 422  AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
            ++LL +CR+H  +++A  AA  + +L   + PG Y+ LSN  A AG+W  V ++R+ M  
Sbjct: 1455 SSLLGACRIHKRIDLAEKAAKSLLELQPQN-PGNYILLSNIYANAGQWKDVAKIRDLMTK 1513

Query: 482  RGVLKDTGCSWVGTES 497
            R + K  G +W+  +S
Sbjct: 1514 RKLKKIPGYTWIELKS 1529



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 72/266 (27%), Positives = 126/266 (47%), Gaps = 14/266 (5%)

Query: 64   GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
            G  IH  + K G+  +  +   L+ ++ KC  ++ A  +FD +P + L  +  MI GY +
Sbjct: 1200 GRLIHCVVLKYGLHLDHFVCAALVDMYAKCKVIEDAKLLFDVMPSKDLVTWTVMIGGYAE 1259

Query: 124  NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
             G  +ESL L   L   G  PD    +M+   + C +       N  R VH  + +    
Sbjct: 1260 CGNAKESLVLFDHLREEGFVPD--KIAMVSIVNACAKLGA---MNKARFVHEYVNRNRFS 1314

Query: 184  ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
             D +L TA++D Y K G    AR +FD M  KNVI  ++MI+ +   G  + A E+F   
Sbjct: 1315 LDVILGTAMIDMYAKCGDVDSAREIFDNMHHKNVISWSAMIAAYGYHGQGKKALELFPMM 1374

Query: 244  VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE------DVKLGSALVDMYAKC 297
            +   I+  N  I   S+    +   L      + ++ +E      D+K  + +VD+  + 
Sbjct: 1375 LSSGILPNN--ITFVSLLYACSHAGLVEDGLTLLSLMWESFGVRPDIKHHTCMVDLLGRA 1432

Query: 298  GKIDDARRVFDHMQ-QKNVFTWTSMI 322
            G++ +A R  ++M  +K+   W+S++
Sbjct: 1433 GQLTEAFRFIENMTVEKDEGLWSSLL 1458


>gi|242085550|ref|XP_002443200.1| hypothetical protein SORBIDRAFT_08g015300 [Sorghum bicolor]
 gi|241943893|gb|EES17038.1| hypothetical protein SORBIDRAFT_08g015300 [Sorghum bicolor]
          Length = 502

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 168/472 (35%), Positives = 268/472 (56%), Gaps = 44/472 (9%)

Query: 42  PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQ 101
           P TA  L   ++    S     G ++HA     G+ PNT +    ++L+ +CGAL  A Q
Sbjct: 3   PPTAGRLSVLIRRCAASGALSPGAQVHAQGLVGGLLPNTTLDTDFVLLYSRCGALHRARQ 62

Query: 102 MFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161
           +FD +   ++ AYN ++A       VE    L+ +L++SG RPD Y+   +L+A    R 
Sbjct: 63  VFDGMSFPSMHAYNVLLAASPPGTAVE----LISRLLASGLRPDRYSIPAVLRACAELRD 118

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
            +     LG + H   L+  + A+ V+  AL+D Y K G  + A  VFD M E++ +   
Sbjct: 119 ML-----LGAVFHGLALRLGLLANVVVSGALLDMYAKTGMLADATRVFDEMPERDAVVWN 173

Query: 222 SMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETAR--------------- 266
            M++G+   G  E+  E+FRK          A IE    S++ AR               
Sbjct: 174 CMVTGYARAGRSEETLELFRK----------AQIE----SVDMARDLRAVPNVLNVCANE 219

Query: 267 ----KALEVHCQLIKNVFFE-DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
               K  E+H ++++   F+ D+ +G+ALVDMYAKCG++D A+ VF  M+ +NV +W+++
Sbjct: 220 GQLMKGREIHGRMVRCFAFDSDIAVGNALVDMYAKCGQVDGAQAVFASMKVRNVMSWSTL 279

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           I  YG +G   +AL ++  M    V+PN +TF+  LS+C H+GLV  GR IFESM + ++
Sbjct: 280 ISCYGVHGMGKEALRIYEEMVSRGVKPNCITFISILSSCSHSGLVSDGRRIFESMSKVHA 339

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441
           ++P  +HYACMVDLLGRAG++E+A+  + +MP +P + +W ALLS+C  H++V++  +AA
Sbjct: 340 VEPTADHYACMVDLLGRAGAIEEAVGIIRKMPMEPGASLWGALLSACATHNNVDVGEVAA 399

Query: 442 NEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            ++F+L   +    YV L     A G+ DSV+ +R +M+  G++K  GCSWV
Sbjct: 400 YKLFELEEGNASN-YVTLCGIYDAIGRSDSVSGIRSRMRELGMVKTPGCSWV 450


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 160/440 (36%), Positives = 258/440 (58%), Gaps = 15/440 (3%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G ++H  I K+G   N  +   L+ ++ KCG LK A  M + +    + ++N ++ G++
Sbjct: 283 FGEQVHGFIVKSGFGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFV 342

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           ++G  EE+L L + +     + D YTF  +L    CC      P++    VH  I+K   
Sbjct: 343 RHGLEEEALRLFKNMHGRNMKIDDYTFPSVL---NCCVVGSINPKS----VHGLIIKTGF 395

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-- 240
           +   ++  ALVD Y K G    A  VF+ MLEK+VI  TS+++G+      E++ +IF  
Sbjct: 396 ENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCD 455

Query: 241 -RKT-VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
            R T V  D  +  +++   +  +       +VH   IK+       + ++LV MYAKCG
Sbjct: 456 MRVTGVNPDQFIVASILSACA-ELTLLEFGKQVHLDFIKSGLRWSQSVYNSLVAMYAKCG 514

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            +DDA  +F  MQ K+V TWT++I GY +NG    +L+ +  M     +P+++TF+G L 
Sbjct: 515 CLDDADAIFVSMQVKDVITWTAIIVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLF 574

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC HAGLVD+GR+ F+ M + Y +KP  EHYACM+DL GR+G L++A + + +M  KP++
Sbjct: 575 ACSHAGLVDEGRKYFQQMNKVYGIKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDA 634

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNA-NDRPGAYVALSNTLAAAGKWDSVTELRE 477
            VW +LLS+CR+H+++E+A  AA  +F+L   N  P  YV LSN  +A+ KW+ V ++R+
Sbjct: 635 TVWKSLLSACRVHENLELAERAATNLFELEPMNAMP--YVMLSNMYSASRKWNDVAKIRK 692

Query: 478 KMKLRGVLKDTGCSWVGTES 497
            MK +G++K+ GCSW+   S
Sbjct: 693 LMKSKGIVKEPGCSWLEINS 712



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 107/371 (28%), Positives = 181/371 (48%), Gaps = 22/371 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD--ELPQRTLSAYNYMIAGY 121
           G  IH  + K G + N  +   L+ ++ KC  +  A  +F   E  ++    +  M+ GY
Sbjct: 181 GEMIHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGY 240

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            +NG   +++   R + + G   + YTF  IL   T C S   L R  G  VH  I+K  
Sbjct: 241 AQNGDGYKAVEFFRYMHAQGVECNQYTFPTIL---TACSS--VLARCFGEQVHGFIVKSG 295

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
             ++  + +ALVD Y K G    A+ + + M + +V+   S++ GF+  G  E+A  +F 
Sbjct: 296 FGSNVYVQSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLF- 354

Query: 242 KTVEKDIVVYNAMIEGYSI------SIETARKALEVHCQLIKNVFFEDVKLGS-ALVDMY 294
               K++   N  I+ Y+        +  +     VH  +IK   FE+ KL S ALVDMY
Sbjct: 355 ----KNMHGRNMKIDDYTFPSVLNCCVVGSINPKSVHGLIIKTG-FENYKLVSNALVDMY 409

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           AK G +D A  VF+ M +K+V +WTS++ GY +N +  ++L++FC M+   V P+     
Sbjct: 410 AKTGDMDCAYTVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVA 469

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             LSAC    L++ G+++     +   ++     Y  +V +  + G L+ A    + M  
Sbjct: 470 SILSACAELTLLEFGKQVHLDFIKS-GLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQV 528

Query: 415 KPNSDVWAALL 425
           K +   W A++
Sbjct: 529 K-DVITWTAII 538



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 109/466 (23%), Positives = 196/466 (42%), Gaps = 74/466 (15%)

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIA-------------------------------G 120
           K G +  A ++FD++PQ+   ++N MI+                               G
Sbjct: 77  KSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITWSSIISG 136

Query: 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
           Y K G   E+  L R +   G +   +T   +L+      S++ L +  G M+H  ++K 
Sbjct: 137 YCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVC----SSLGLIQT-GEMIHGFVVKN 191

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMML--EKNVICSTSMISGFMSQGFVEDAEE 238
             + +  + T LVD Y K    S A  +F  +    KN +  T+M++G+   G    A E
Sbjct: 192 GFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAVE 251

Query: 239 IFR----KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
            FR    + VE +   +  ++   S S+       +VH  ++K+ F  +V + SALVDMY
Sbjct: 252 FFRYMHAQGVECNQYTFPTILTACS-SVLARCFGEQVHGFIVKSGFGSNVYVQSALVDMY 310

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           AKCG + +A+ + + M+  +V +W S++ G+ ++G   +AL LF  M    ++ +  TF 
Sbjct: 311 AKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNMKIDDYTFP 370

Query: 355 GALSAC---------GHAGLVDKGREIFE--------------SMERDYSMKPKMEH--- 388
             L+ C          H  ++  G E ++               M+  Y++  KM     
Sbjct: 371 SVLNCCVVGSINPKSVHGLIIKTGFENYKLVSNALVDMYAKTGDMDCAYTVFEKMLEKDV 430

Query: 389 --YACMVDLLGRAGSLEQALKFVLEM---PEKPNSDVWAALLSSCRLHDDVEMANIAANE 443
             +  +V    +  S E++LK   +M      P+  + A++LS+C     +E       +
Sbjct: 431 ISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELTLLEFGKQVHLD 490

Query: 444 IFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTG 489
             K         Y +L    A  G  D    +   M+++ V+  T 
Sbjct: 491 FIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTA 536



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 122/270 (45%), Gaps = 38/270 (14%)

Query: 192 LVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK--------- 242
           L++   K G+ + AR +FD M +K+     +MIS +++ G + +A E+F           
Sbjct: 71  LLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCSCKSSITW 130

Query: 243 ------------TVEKDIVVYNAMIEGYSISIETARKALEV-------------HCQLIK 277
                        VE   +  +  +EG+  S  T    L V             H  ++K
Sbjct: 131 SSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEMIHGFVVK 190

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ--QKNVFTWTSMIDGYGKNGNPNQAL 335
           N F  +V + + LVDMYAKC  + +A  +F  ++  +KN   WT+M+ GY +NG+  +A+
Sbjct: 191 NGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQNGDGYKAV 250

Query: 336 ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDL 395
           E F  M    V+ N  TF   L+AC        G ++   + +       +   + +VD+
Sbjct: 251 EFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKS-GFGSNVYVQSALVDM 309

Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
             + G L+ A K +LE  E  +   W +L+
Sbjct: 310 YAKCGDLKNA-KNMLETMEDDDVVSWNSLM 338



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 37/58 (63%)

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
           +E +   + L++  +K G+++DAR++FD M QK+ ++W +MI  Y   G   +A ELF
Sbjct: 62  YESIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELF 119


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 149/418 (35%), Positives = 254/418 (60%), Gaps = 9/418 (2%)

Query: 79  NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLV 138
           +  +S   ++ + KCGAL  A ++F  +  +T+S++N +I G+ +NG   ++L L+ ++ 
Sbjct: 384 HVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMT 443

Query: 139 SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVK 198
            SG++PD +T S +L A    +S        G+ +H  +L+  ++ D  + T+L+  Y+ 
Sbjct: 444 YSGQQPDWFTISSLLLACAHLKS-----LQYGKEIHGYVLRNGLETDFFVGTSLLSHYIH 498

Query: 199 GGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE-- 256
            GK S AR++FD M +KN++   +MISG+   G   ++  +FRK++ + I  +   I   
Sbjct: 499 CGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAIVSV 558

Query: 257 -GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
            G    +   R   E H  ++K +  ED  +G +++DMYAK G I ++R+VFD ++ KNV
Sbjct: 559 FGACSQLSALRLGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGLKDKNV 618

Query: 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES 375
            +W ++I  +G +G+  +A+EL+  M++    P+  T++G L ACGHAGLV++G + F+ 
Sbjct: 619 ASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGLVEEGLKYFKE 678

Query: 376 MERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVE 435
           M+    ++PK+EHYAC++D+L RAG L+ AL+ V EMPE+ ++ +W++LL SCR    +E
Sbjct: 679 MQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIWSSLLRSCRTFGALE 738

Query: 436 MANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           +    A ++ +L   D+   YV LSN  A  GKWD V  +R+ MK  G+ KD GCSW+
Sbjct: 739 IGEKVAKKLLELEP-DKAENYVLLSNLYAGLGKWDGVRRVRQMMKEIGLQKDAGCSWI 795



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 87/317 (27%), Positives = 155/317 (48%), Gaps = 16/317 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH  + K G+  +  +   L+ ++ KCGA+  A ++FD +P+  L ++N MI  + +
Sbjct: 165 GEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSE 224

Query: 124 NGQVEESLSLVRKLVSS-GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           NG   +S  L+ +++   G  PD  T   IL     C     +  ++G  +H   +K  +
Sbjct: 225 NGFSRDSFDLLMEMLGEEGLLPDVVTVVTILPV---CAGEGEV--DIGMGIHGLAVKLGL 279

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             + ++  A+V  Y K G  + A++ F     KNV+   +MIS F  +G V +A  + ++
Sbjct: 280 SEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQE 339

Query: 243 TV-------EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
                      ++ + N +     +     R   E+H    ++ F + V+L +A +  YA
Sbjct: 340 MQIQGEEMKANEVTILNVLPA--CLDKLQLRSLKELHGYSFRHCF-QHVELSNAFILAYA 396

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KCG ++ A +VF  +  K V +W ++I G+ +NG+P +AL L   M     QP++ T   
Sbjct: 397 KCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISS 456

Query: 356 ALSACGHAGLVDKGREI 372
            L AC H   +  G+EI
Sbjct: 457 LLLACAHLKSLQYGKEI 473



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 82/308 (26%), Positives = 154/308 (50%), Gaps = 19/308 (6%)

Query: 64  GLKIHAHIT-KTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G ++H  ++  T  + +  ++ +L+ ++  CG+   +  +FD +  + L  +N +++GY 
Sbjct: 62  GRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYT 121

Query: 123 KNGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           +NG   + + +   LVS  + +PD +TF  ++KA         L   LG ++H  ++K  
Sbjct: 122 RNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGI-----LDVRLGEVIHGMVIKMG 176

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +  D  +  ALV  Y K G    A  VFD M E N++   SMI  F   GF  D+ ++  
Sbjct: 177 LVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLM 236

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFEDVKLGSALVDMYAKC 297
           + + ++ ++ + +     + +      ++    +H   +K    E+V + +A+V MY+KC
Sbjct: 237 EMLGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKC 296

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ-----PNYVT 352
           G +++A+  F     KNV +W +MI  +   G+ N+A   F ++QE  +Q      N VT
Sbjct: 297 GYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEA---FNLLQEMQIQGEEMKANEVT 353

Query: 353 FLGALSAC 360
            L  L AC
Sbjct: 354 ILNVLPAC 361



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 78/304 (25%), Positives = 152/304 (50%), Gaps = 27/304 (8%)

Query: 28  TFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLL 87
           T+  +  ++ ++S+ L A +   +LQ         YG +IH ++ + G++ +  +   LL
Sbjct: 443 TYSGQQPDWFTISSLLLACAHLKSLQ---------YGKEIHGYVLRNGLETDFFVGTSLL 493

Query: 88  ILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGY 147
             ++ CG    A  +FD +  + L ++N MI+GY +NG   ESL+L RK +S G +   +
Sbjct: 494 SHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQS--H 551

Query: 148 TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARI 207
             +++     C  S +   R LG+  H  +LK     D  +  +++D Y K G    +R 
Sbjct: 552 EIAIVSVFGAC--SQLSALR-LGKEAHGYVLKALQTEDAFVGCSIIDMYAKSGCIKESRK 608

Query: 208 VFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE----KDIVVYNAMIE--GYSIS 261
           VFD + +KNV    ++I      G  ++A E++ +  +     D   Y  ++   G++  
Sbjct: 609 VFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGILMACGHAGL 668

Query: 262 IETARKALEVHCQLIKNVFFEDVKLG--SALVDMYAKCGKIDDARRVFDHM-QQKNVFTW 318
           +E   K    + + ++N    + KL   + L+DM A+ G++DDA R+ + M ++ +   W
Sbjct: 669 VEEGLK----YFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVNEMPEEADNRIW 724

Query: 319 TSMI 322
           +S++
Sbjct: 725 SSLL 728



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 79/147 (53%), Gaps = 5/147 (3%)

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC-MM 341
           D  L + L+ MYA CG   D+R VFD+M+ KN+  W +++ GY +NG     +++F  ++
Sbjct: 78  DYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLV 137

Query: 342 QECCVQPNYVTFLGALSACGHAGLVD-KGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
            +   QP+  TF   + ACG  G++D +  E+   M     +   +     +V + G+ G
Sbjct: 138 SDTDFQPDNFTFPSVIKACG--GILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCG 195

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSS 427
           ++++A+K    MPE  N   W +++ +
Sbjct: 196 AVDEAMKVFDFMPE-TNLVSWNSMICA 221


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 160/434 (36%), Positives = 255/434 (58%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IHA I ++    +  +S  L  +++KCGA+K A ++F+ LP R + A+N MI G + 
Sbjct: 265 GKQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVD 324

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +GQ+EE+  +  +++     PD  T+  IL  S C R   P     G+ +HA+ +K  + 
Sbjct: 325 SGQLEEAHGMFHRMLKECVAPDRVTYLAIL--SACAR---PGGLACGKEIHARAVKDGLV 379

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +D     AL++ Y K G    AR VFD M +++V+  T+++ G+   G V ++   F+K 
Sbjct: 380 SDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKM 439

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               VE + + Y  +++  S  +   +   E+H +++K   F D+ + +AL+ MY KCG 
Sbjct: 440 LQQGVEANKITYMCVLKACSNPV-ALKWGKEIHAEVVKAGIFADLAVANALMSMYFKCGS 498

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ++DA RV + M  ++V TW ++I G  +NG   +AL+ F +M+   ++PN  TF+  +SA
Sbjct: 499 VEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSA 558

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C    LV++GR  F SM +DY + P  +HYACMVD+L RAG L +A   +L MP KP++ 
Sbjct: 559 CRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSAA 618

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +W ALL++CR H +VE+   AA +  KL   +  G YV+LS   AAAG W  V +LR+ M
Sbjct: 619 MWGALLAACRAHGNVEIGEQAAEQCLKLEPQN-AGTYVSLSFIYAAAGMWRDVAKLRKLM 677

Query: 480 KLRGVLKDTGCSWV 493
           K RGV K+ G SW+
Sbjct: 678 KERGVKKEPGRSWI 691



 Score =  191 bits (485), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 199/380 (52%), Gaps = 16/380 (4%)

Query: 52  LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL 111
           LQ  + +     G ++H HI + G+KPN  I   LL L++ CG++  A ++FD+   +++
Sbjct: 51  LQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFSNKSV 110

Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR 171
            ++N MI+GY   G  +E+ +L   +   G  PD +TF  IL A   C S  P   N GR
Sbjct: 111 VSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSA---CSS--PAALNWGR 165

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
            VH ++++  +  +  +  AL+  Y K G    AR VFD M  ++ +  T++   +   G
Sbjct: 166 EVHVRVMEAGLANNATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESG 225

Query: 232 FVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG 287
           + +++ + +   +++ +    + Y  ++     S+    K  ++H Q++++    DV++ 
Sbjct: 226 YAQESLKTYHAMLQEGVRPSRITYMNVLSACG-SLAALEKGKQIHAQIVESEHHSDVRVS 284

Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347
           +AL  MY KCG + DAR VF+ +  ++V  W +MI G   +G   +A  +F  M + CV 
Sbjct: 285 TALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVA 344

Query: 348 PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALK 407
           P+ VT+L  LSAC   G +  G+EI     +D  +   +     ++++  +AGS++ A +
Sbjct: 345 PDRVTYLAILSACARPGGLACGKEIHARAVKD-GLVSDVRFGNALINMYSKAGSMKDARQ 403

Query: 408 FVLEMPEKPNSDV--WAALL 425
               MP++   DV  W AL+
Sbjct: 404 VFDRMPKR---DVVSWTALV 420



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 93/201 (46%), Gaps = 22/201 (10%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L A S P AL+         +G +IHA + K G+  +  ++  L+ ++ KCG+++ A ++
Sbjct: 455 LKACSNPVALK---------WGKEIHAEVVKAGIFADLAVANALMSMYFKCGSVEDAIRV 505

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
            + +  R +  +N +I G  +NG+  E+L     + S   RP+  TF  ++ A   CR  
Sbjct: 506 SEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFVNVMSA---CRV- 561

Query: 163 VPLPRNL---GRMVHAQILK-CDVKADDVLYTALVDSYVKGGKTSYAR-IVFDMMLEKNV 217
               RNL   GR   A + K   +   +  Y  +VD   + G    A  ++  M  + + 
Sbjct: 562 ----RNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPFKPSA 617

Query: 218 ICSTSMISGFMSQGFVEDAEE 238
               ++++   + G VE  E+
Sbjct: 618 AMWGALLAACRAHGNVEIGEQ 638


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  293 bits (749), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 159/438 (36%), Positives = 254/438 (57%), Gaps = 18/438 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD--ELPQRTLSAYNYMIAGY 121
           G  +HA + + G   +  +   L+ L+ KC  L  A  +F+   LP+RT+ ++  +++ Y
Sbjct: 138 GRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAY 197

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            +NG+  E+L +  ++     +PD      +L A TC +         GR +HA ++K  
Sbjct: 198 AQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQD-----LKQGRSIHASVVKMG 252

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           ++ +  L  +L   Y K G+ + A+I+FD M   N+I   +MISG+   G+  +A ++F 
Sbjct: 253 LEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFH 312

Query: 242 KTVEKD-----IVVYNAMIEGYSI-SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
           + + KD     I + +A+     + S+E AR   E    + ++ + +DV + SAL+DM+A
Sbjct: 313 EMINKDVRPDTISITSAISACAQVGSLEQARSMYEY---VGRSDYRDDVFISSALIDMFA 369

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KCG ++ AR VFD    ++V  W++MI GYG +G   +A+ L+  M+   V PN VTFLG
Sbjct: 370 KCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLG 429

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            L AC H+G+V +G   F  M  D+ + P+ +HYAC++DLLGRAG L+QA + +  MP +
Sbjct: 430 LLMACNHSGMVREGWWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQ 488

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
           P   VW ALLS+C+ H  VE+   AA ++F ++ ++  G YV LSN  AAA  WD V E+
Sbjct: 489 PGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSN-TGHYVQLSNLYAAARLWDRVAEV 547

Query: 476 REKMKLRGVLKDTGCSWV 493
           R +MK +G+ KD GCSWV
Sbjct: 548 RVRMKEKGLNKDVGCSWV 565



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 195/373 (52%), Gaps = 16/373 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IHA +   G++ +  +  KL+      G + +A Q+FD+LP+  +  +N +I GY +N 
Sbjct: 39  QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNN 98

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             +++L +   +  +   PD +TF  +LKA   C     L   +GR VHAQ+ +    AD
Sbjct: 99  HFQDALLMYSNMQLARVSPDSFTFPHLLKA---CSGLSHL--QMGRFVHAQVFRLGFDAD 153

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDM--MLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
             +   L+  Y K  +   AR VF+   + E+ ++  T+++S +   G   +A EIF + 
Sbjct: 154 VFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQM 213

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               V+ D V   +++  ++  ++  ++   +H  ++K     +  L  +L  MYAKCG+
Sbjct: 214 RKMDVKPDWVALVSVLNAFT-CLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQ 272

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +  A+ +FD M+  N+  W +MI GY KNG   +A+++F  M    V+P+ ++   A+SA
Sbjct: 273 VATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISA 332

Query: 360 CGHAGLVDKGREIFESMER-DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           C   G +++ R ++E + R DY  +  +   + ++D+  + GS+E A + V +     + 
Sbjct: 333 CAQVGSLEQARSMYEYVGRSDY--RDDVFISSALIDMFAKCGSVEGA-RLVFDRTLDRDV 389

Query: 419 DVWAALLSSCRLH 431
            VW+A++    LH
Sbjct: 390 VVWSAMIVGYGLH 402



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 156/320 (48%), Gaps = 14/320 (4%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           + +HA++L   ++    L T L+ +    G  ++AR VFD +    +    ++I G+   
Sbjct: 38  KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97

Query: 231 GFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
              +DA  ++       V  D   +  +++  S  +   +    VH Q+ +  F  DV +
Sbjct: 98  NHFQDALLMYSNMQLARVSPDSFTFPHLLKACS-GLSHLQMGRFVHAQVFRLGFDADVFV 156

Query: 287 GSALVDMYAKCGKIDDARRVFDH--MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
            + L+ +YAKC ++  AR VF+   + ++ + +WT+++  Y +NG P +ALE+F  M++ 
Sbjct: 157 QNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKM 216

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMER-DYSMKPKMEHYACMVDLLGRAGSLE 403
            V+P++V  +  L+A      + +GR I  S+ +    ++P +     +  +  + G + 
Sbjct: 217 DVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDL--LISLNTMYAKCGQVA 274

Query: 404 QALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL 463
            A K + +  + PN  +W A++S    +     A    +E+  +N + RP   +++++ +
Sbjct: 275 TA-KILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEM--INKDVRPDT-ISITSAI 330

Query: 464 AAAGKWDSVTELREKMKLRG 483
           +A  +  S+ + R   +  G
Sbjct: 331 SACAQVGSLEQARSMYEYVG 350


>gi|357440191|ref|XP_003590373.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355479421|gb|AES60624.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 840

 Score =  292 bits (748), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 169/520 (32%), Positives = 289/520 (55%), Gaps = 46/520 (8%)

Query: 1   MPNLSRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDT 60
            P+ SR  S+  +  H +   L      F  K +NY+++ N              +N   
Sbjct: 211 FPSNSRTLSTFTTHIHLQQPLLQMALHGFNMKFENYNAILNEC------------VNKRA 258

Query: 61  PFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120
              G ++HAH+ KT   P+  +  +L++L+ KC +L  A  +FDE+P+R + ++  MI+ 
Sbjct: 259 FREGQRVHAHMIKTRYLPSVFLRTRLIVLYTKCDSLGDAHNVFDEMPERNVVSWTAMISA 318

Query: 121 YLKNGQVEESLSL--------------VRKL-VSSGERP------DGYTFSMILKASTCC 159
           Y + G   ++L+L              + KL +S+  RP      + +TF+ +L   T C
Sbjct: 319 YSQRGYASQALNLFFADVKISLTGVYAIDKLKLSNPNRPWVCTEPNEFTFATVL---TSC 375

Query: 160 RSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVIC 219
            S++     LGR +H+ I+K + +    + ++L+D Y K GK   AR VF+ + E++V+ 
Sbjct: 376 TSSLGFI--LGRQIHSLIIKLNYEDHVFVGSSLLDMYAKDGKIHEARTVFECLPERDVVS 433

Query: 220 STSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQL 275
            T++ISG+   G  E+A E+FR+     ++ + V Y  ++   S  +       +VH  +
Sbjct: 434 CTAIISGYAQLGLDEEALELFRRLQGEGMKSNYVTYTGVLTALS-GLAALDLGKQVHNHV 492

Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
           +++     V L ++L+DMY+KCG +  +RR+FD M ++ V +W +M+ GY K+G   + L
Sbjct: 493 LRSEIPSFVVLQNSLIDMYSKCGNLTYSRRIFDTMYERTVISWNAMLVGYSKHGEGREVL 552

Query: 336 ELFCMM-QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER-DYSMKPKMEHYACMV 393
           +LF +M +E  V+P+ VT L  LS C H GL DKG  IF  M      ++PKMEHY C+V
Sbjct: 553 KLFTLMREETKVKPDSVTILAVLSGCSHGGLEDKGLNIFNDMSSGKIEVEPKMEHYGCVV 612

Query: 394 DLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRP 453
           DLLGR+G +E+A +F+ +MP +P + +W +LL +CR+H +V++   A  ++ ++   +  
Sbjct: 613 DLLGRSGRVEEAFEFIKKMPFEPTAAIWGSLLGACRVHSNVDIGEFAGQQLLEIEPGN-A 671

Query: 454 GAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           G YV LSN  A+AG+W+ V+ LR+ M  + V K+ G S +
Sbjct: 672 GNYVILSNLYASAGRWEDVSSLRDLMLKKTVTKEPGRSSI 711


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 158/434 (36%), Positives = 257/434 (59%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H +I +  V  +  +   L+ ++ KC  ++ A  ++D      +   + MI+GY+ 
Sbjct: 362 GKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVL 421

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  EE+L + R L+    +P+  T + +L     C S   LP  LG+ +H  +L+   +
Sbjct: 422 NGMSEEALQMFRYLLEQCIKPNAVTIASVLPG---CASMAALP--LGQQIHGYVLRNAYE 476

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               + +AL+D Y K G+   +  +F  M +K+ +   SMIS F   G  ++A ++FR+ 
Sbjct: 477 RKCYVESALMDMYAKCGRLDLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQM 536

Query: 244 VEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
             + I  YN +    ++S   +  A+    E+H   IK     D+   SAL+DMYAKCG 
Sbjct: 537 CMEGIK-YNNITISAALSACASLPAIYYGKEIHGVTIKGPIKADIFAESALIDMYAKCGN 595

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ++ A RVF+ M  KN  +W S+I  YG +G   +++ L   MQE   +P++VTFL  +SA
Sbjct: 596 LELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISA 655

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C HAGLV++G ++F+ M + Y + P+MEH+ACMVDL  R+G L++A++F+ +MP KP++ 
Sbjct: 656 CAHAGLVEEGVQLFQCMTKKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFKPDAG 715

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +W ALL +CR+H +VE+A+IA+ E+FKL+  +  G YV +SN  A AG+WD V+++R  M
Sbjct: 716 IWGALLHACRVHRNVELADIASQELFKLDPANS-GYYVLMSNINAVAGRWDGVSKVRRLM 774

Query: 480 KLRGVLKDTGCSWV 493
           K   +LK  G SWV
Sbjct: 775 KDNKILKIPGYSWV 788



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/421 (24%), Positives = 200/421 (47%), Gaps = 20/421 (4%)

Query: 12  FSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHI 71
           F++    H  ++     F  K+ ++ +  +P  A +LP  ++          G  +H   
Sbjct: 114 FTAAGQHHLAVL-----FYVKMWSHPAAPSP-DAHTLPYVVKSCAALGAMSLGRLVHRTA 167

Query: 72  TKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESL 131
              G+  +  +   L+ ++   G L  A   FD +P+R    +N M+ G +K G V+ ++
Sbjct: 168 RAIGLANDVYVGSALVKMYADAGLLGNARDAFDGIPERDCVLWNVMMDGCIKAGDVDGAV 227

Query: 132 SLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTA 191
            L R + +SG  P+  T +  L   + C ++  L    G  +H+  +KC ++ +  +   
Sbjct: 228 RLFRNMRASGCEPNFATLACFL---SVCATDADLLS--GAQLHSLAVKCGLEPEVAVANT 282

Query: 192 LVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKD 247
           L+  Y K      A  +F++M + +++    MISG +  G   +A  +F    R     D
Sbjct: 283 LLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAFGLFYDMQRSGARPD 342

Query: 248 IVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVF 307
            +   +++   +  +   ++  EVH  +++N    DV L SALVD+Y KC  +  A+ ++
Sbjct: 343 SITLVSLLPALT-DLNGLKQGKEVHGYIVRNCVNMDVFLVSALVDIYFKCRDVRMAQNLY 401

Query: 308 DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367
           D  +  +V   ++MI GY  NG   +AL++F  + E C++PN VT    L  C     + 
Sbjct: 402 DAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVTIASVLPGCASMAALP 461

Query: 368 KGREIFESMERD-YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
            G++I   + R+ Y  K  +E  + ++D+  + G L+ +    L+M +K +   W +++S
Sbjct: 462 LGQQIHGYVLRNAYERKCYVE--SALMDMYAKCGRLDLSHYIFLKMSQK-DEVTWNSMIS 518

Query: 427 S 427
           S
Sbjct: 519 S 519



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 54/94 (57%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           +YG +IH    K  +K +      L+ ++ KCG L+ A ++F+ +P +   ++N +I+ Y
Sbjct: 562 YYGKEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVSWNSIISAY 621

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
             +G V+ES+SL+  +   G +PD  TF  ++ A
Sbjct: 622 GAHGLVKESVSLLHGMQEEGYKPDHVTFLALISA 655


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 157/436 (36%), Positives = 260/436 (59%), Gaps = 16/436 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA+  + G+  N  I   L+ ++ KC  +KY G  F+ + ++ L ++  +IAGY +
Sbjct: 368 GKEVHAYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQ 427

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N    E+++L RK+   G   D      +L+A +  +S     RN  R +H  + K D+ 
Sbjct: 428 NEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKS-----RNFIREIHGYVFKRDL- 481

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
           AD +L  A+V+ Y + G   YAR  F+ +  K+++  TSMI+  +  G   +A E+F   
Sbjct: 482 ADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSL 541

Query: 241 -RKTVEKDIVVYNAMIEGYSIS--IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
            +  ++ D +   A+I   S +  + + +K  E+H  LI+  FF +  + S+LVDMYA C
Sbjct: 542 KQTNIQPDSI---AIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACC 598

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G ++++R++F  ++Q+++  WTSMI+  G +G  N+A+ LF  M +  V P+++TFL  L
Sbjct: 599 GTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALL 658

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            AC H+GL+ +G+  FE M+  Y ++P  EHYACMVDLL R+ SLE+A  FV  MP KP+
Sbjct: 659 YACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVRNMPIKPS 718

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
           S++W ALL +C +H + E+  +AA E+ + +  +  G Y  +SN  AA G+W+ V E+R 
Sbjct: 719 SEIWCALLGACHIHSNKELGELAAKELLQ-SDTENSGKYALISNIFAADGRWNDVEEVRL 777

Query: 478 KMKLRGVLKDTGCSWV 493
           +MK  G+ K+ GCSW+
Sbjct: 778 RMKGNGLKKNPGCSWI 793



 Score =  146 bits (368), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 198/385 (51%), Gaps = 25/385 (6%)

Query: 28  TFPPKLQNYDSLSNPLTATSLPSALQHY--------INSDTPFYGLKIHAHITKTGVKPN 79
           T  P  Q+   LS    AT  PS L+H         + +     G ++HA + K+ +  +
Sbjct: 23  TLKPAFQSLTLLSTHPLAT--PSRLEHAHSLLLDLCVAAKALPQGQQLHALLLKSHL--S 78

Query: 80  TNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVS 139
             ++ KL++++ KCG+L+ A ++FDE+ +RT+ ++N ++  ++ +G+  E++ L + +  
Sbjct: 79  AFLATKLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYLEAIELYKDMRV 138

Query: 140 SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKG 199
            G   D  TF  +LKA      +      LG  +H   +KC       +  AL+  Y K 
Sbjct: 139 LGVAIDACTFPSVLKACGALGES-----RLGAEIHGVAVKCGYGEFVFVCNALIAMYGKC 193

Query: 200 GKTSYARIVFD--MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIV----VYNA 253
           G    AR++FD  MM +++ +   S+IS  +++G   +A  +FR+  E  +      + A
Sbjct: 194 GDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVA 253

Query: 254 MIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK 313
            ++G        +  + +H  ++K+  F DV + +AL+ MYAKCG+++DA RVF+ M  +
Sbjct: 254 ALQGVE-DPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCR 312

Query: 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF 373
           +  +W +++ G  +N   + AL  F  MQ    +P+ V+ L  ++A G +G + KG+E+ 
Sbjct: 313 DYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVH 372

Query: 374 ESMERDYSMKPKMEHYACMVDLLGR 398
               R+  +   M+    +VD+  +
Sbjct: 373 AYAIRN-GLDSNMQIGNTLVDMYAK 396



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 119/462 (25%), Positives = 209/462 (45%), Gaps = 31/462 (6%)

Query: 39  LSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKY 98
           L   + A + PS L+          G +IH    K G      +   L+ ++ KCG L  
Sbjct: 139 LGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGG 198

Query: 99  AGQMFDE--LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAS 156
           A  +FD   + +    ++N +I+ ++  G   E+LSL R++   G   + YTF   L+  
Sbjct: 199 ARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGV 258

Query: 157 TCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216
                  P    LG  +H  +LK +  AD  +  AL+  Y K G+   A  VF+ ML ++
Sbjct: 259 -----EDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRMEDAGRVFESMLCRD 313

Query: 217 VICSTSMISGFMSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSISIETARKALEVH 272
            +   +++SG +      DA   FR       + D V    +I     S     K  EVH
Sbjct: 314 YVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRS-GNLLKGKEVH 372

Query: 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPN 332
              I+N    ++++G+ LVDMYAKC  +      F+ M +K++ +WT++I GY +N    
Sbjct: 373 AYAIRNGLDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHL 432

Query: 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKG--REIFESM-ERDYSMKPKMEHY 389
           +A+ LF  +Q   +  + +     L AC  +GL  +   REI   + +RD  +   M   
Sbjct: 433 EAINLFRKVQVKGMDVDPMMIGSVLRAC--SGLKSRNFIREIHGYVFKRD--LADIMLQN 488

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK--L 447
           A +V++ G  G ++ A +   E     +   W ++++ C +H+ +    + A E+F    
Sbjct: 489 A-IVNVYGEVGHIDYARR-AFESIRSKDIVSWTSMITCC-VHNGLP---VEALELFYSLK 542

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTG 489
             N +P +   +S   A A    +++ L++  ++ G L   G
Sbjct: 543 QTNIQPDSIAIISALSATA----NLSSLKKGKEIHGFLIRKG 580



 Score = 42.0 bits (97), Expect = 0.82,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 54/113 (47%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           + ++ SAL    N  +   G +IH  + + G      I+  L+ ++  CG ++ + +MF 
Sbjct: 550 SIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFH 609

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
            + QR L  +  MI     +G   ++++L +K+      PD  TF  +L A +
Sbjct: 610 SVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACS 662


>gi|449475140|ref|XP_004154387.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
 gi|449522468|ref|XP_004168248.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Cucumis sativus]
          Length = 574

 Score =  292 bits (747), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 159/439 (36%), Positives = 262/439 (59%), Gaps = 22/439 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA I + G+  N  ++ KL+ L+  C +L  A  +FD + +R L  +N MI GY  
Sbjct: 20  GKQLHARICQVGISFNPLLATKLVNLYCICNSLTNAHLLFDRISKRNLFLWNVMIRGYAW 79

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  E ++SL  ++   G  PD +TF  +LKA   C +   +    G+ +H  +++  ++
Sbjct: 80  NGPYELAISLYYQMRDYGLVPDKFTFPFVLKA---CSALSAMEE--GKKIHKDVIRSGLE 134

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +D  +  AL+D Y K G    AR VFD + E++V+C  SM++ +   G  +++  + R  
Sbjct: 135 SDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCR-- 192

Query: 244 VEKDIVVYNAM--IEG-YSISIETAR------KALEVHCQLIKNVFFEDVKLGSALVDMY 294
               ++ +N +   EG + ISI  +       +  E+H    ++ F  + K+ +AL+DMY
Sbjct: 193 ----VMAFNGLKPTEGTFVISIAASADNGLLPQGKELHGYSWRHGFESNDKVKTALMDMY 248

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           AK G ++ AR +F+ +++K V +W +MI GY  +G+ N+AL+LF  M+   V P+++TF+
Sbjct: 249 AKSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGK-VLPDHITFV 307

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
           G L+AC H GL+++G+  F SM  D+++ P ++HY CM+DLLG  G LE+A K ++EM  
Sbjct: 308 GVLAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRV 367

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
           +P++ VW ALL SC++H +VEM  +A  ++ +L  +D  G YV LSN  A AGKWD V  
Sbjct: 368 EPDAGVWGALLHSCKIHGNVEMGELALEKLVELEPDD-GGNYVILSNMYAQAGKWDGVAR 426

Query: 475 LREKMKLRGVLKDTGCSWV 493
           LR+ M  +G+ K   CSW+
Sbjct: 427 LRDLMMNKGLKKSIACSWI 445



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 82/317 (25%), Positives = 160/317 (50%), Gaps = 28/317 (8%)

Query: 18  RHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVK 77
           R Y LVP   TFP  L+          A S  SA++          G KIH  + ++G++
Sbjct: 94  RDYGLVPDKFTFPFVLK----------ACSALSAMEE---------GKKIHKDVIRSGLE 134

Query: 78  PNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL 137
            +  +   L+ ++ KCG ++ A Q+FD++ +R +  +N M+A Y +NGQ +ESL+L R +
Sbjct: 135 SDVFVGAALIDMYAKCGCVESARQVFDKIDERDVVCWNSMLATYSQNGQPDESLALCRVM 194

Query: 138 VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYV 197
             +G +P   TF + + AS     N  LP+  G+ +H    +   +++D + TAL+D Y 
Sbjct: 195 AFNGLKPTEGTFVISIAASA---DNGLLPQ--GKELHGYSWRHGFESNDKVKTALMDMYA 249

Query: 198 KGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK---DIVVYNAM 254
           K G  + AR +F+++ EK V+   +MI+G+   G   +A ++F++   K   D + +  +
Sbjct: 250 KSGSVNVARSLFELLEEKRVVSWNAMITGYAMHGHANEALDLFKEMKGKVLPDHITFVGV 309

Query: 255 IEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ-QK 313
           +   S         +     +     +  V+  + ++D+   CG++++A ++   M+ + 
Sbjct: 310 LAACSHGGLLNEGKMHFRSMISDFNIWPTVQHYTCMIDLLGHCGRLEEAYKLIMEMRVEP 369

Query: 314 NVFTWTSMIDGYGKNGN 330
           +   W +++     +GN
Sbjct: 370 DAGVWGALLHSCKIHGN 386


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 157/459 (34%), Positives = 270/459 (58%), Gaps = 15/459 (3%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKC---GALKYAGQMF 103
           +L   +    N +    G ++H+   + G+  +  +   L+ ++ KC   G++  A ++F
Sbjct: 273 TLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIF 332

Query: 104 DELPQRTLSAYNYMIAGYL-KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           D++    + ++  MI GY+ K G  EE+L L R ++ +   P+ +TFS  LKA     +N
Sbjct: 333 DQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKAC----AN 388

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
           +   R +G  V    +K    + + +  +L+  Y + G+   AR  FD++ EKN+I   +
Sbjct: 389 LAALR-IGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNT 447

Query: 223 MISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKN 278
           +I  +      E+A E+F +  ++ +      + +++ G + SI T  K  ++H ++IK+
Sbjct: 448 VIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSG-AASIGTIGKGEQIHARVIKS 506

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
               +  + +AL+ MY++CG I+ A +VF+ M+ +NV +WTS+I G+ K+G   QALELF
Sbjct: 507 GLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELF 566

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398
             M E  V+PN VT++  LSAC H GLV++G + F+SM  ++ + P+MEHYACMVD+LGR
Sbjct: 567 HKMLEEGVRPNLVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACMVDILGR 626

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVA 458
           +GSL +A++F+  MP K ++ VW   L +CR+H ++E+   AA  I +   +D P AY+ 
Sbjct: 627 SGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHD-PAAYIL 685

Query: 459 LSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTES 497
           LSN  A+  KWD V+ +R+ MK + ++K+ GCSWV  E+
Sbjct: 686 LSNLYASTSKWDEVSNIRKAMKEKNLIKEAGCSWVEVEN 724



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 106/384 (27%), Positives = 195/384 (50%), Gaps = 30/384 (7%)

Query: 64  GLKIHAHITKTG-VKPNTNISIKLLILHLKC-GALKYAGQMFDELPQRTLSAYNYMIAGY 121
           G  I   + KTG ++ +  +   L+ + +K  G L  A ++F+++P+R    +  MI   
Sbjct: 187 GDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRL 246

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           ++ G   E++ L  +++ SG  PD +T S ++ A  C    + L   LG+ +H+Q ++  
Sbjct: 247 MQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISA--CANMELLL---LGQQLHSQAIRHG 301

Query: 182 VKADDVLYTALVDSYVK---GGKTSYARIVFDMMLEKNVICSTSMISGFMSQ-GFVEDAE 237
           +  D  +   L++ Y K    G    AR +FD +L+ NV   T+MI+G++ + G+ E+A 
Sbjct: 302 LTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEAL 361

Query: 238 EIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG--------SA 289
           ++FR      +++ + +   ++ S      A     ++ + VF   VKLG        ++
Sbjct: 362 DLFR-----GMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFSSVNCVANS 416

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349
           L+ MYA+ G+IDDAR+ FD + +KN+ ++ ++ID Y KN N  +ALELF  +++  +  +
Sbjct: 417 LISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGAS 476

Query: 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC--MVDLLGRAGSLEQALK 407
             TF   LS     G + KG +I     R      K+    C  ++ +  R G++E A +
Sbjct: 477 AFTFASLLSGAASIGTIGKGEQIH---ARVIKSGLKLNQSVCNALISMYSRCGNIESAFQ 533

Query: 408 FVLEMPEKPNSDVWAALLSSCRLH 431
            V E  E  N   W ++++    H
Sbjct: 534 -VFEDMEDRNVISWTSIITGFAKH 556



 Score = 91.3 bits (225), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 126/257 (49%), Gaps = 11/257 (4%)

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           + NG++ +++S +  +V  G  PD  T+S+ LK   C R+      ++G +VH ++ + D
Sbjct: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLK--KCIRTR---SFDIGTLVHEKLTQSD 96

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMM-LEKNVICSTSMISGFMSQGFVEDAEEIF 240
           ++ D V   +L+  Y K G+   A  +F +M   +++I  ++M+S F +      A   F
Sbjct: 97  LQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNNMGFRALLTF 156

Query: 241 RKTVEKDIVVYNAMIEGYSISIETARKAL---EVHCQLIKNVFFE-DVKLGSALVDMYAK 296
              +E             + +  TA        +   ++K  + + DV +G  L+DM+ K
Sbjct: 157 VDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVK 216

Query: 297 C-GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
             G +  A +VF+ M ++N  TWT MI    + G   +A++LF  M     +P+  T  G
Sbjct: 217 GRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSG 276

Query: 356 ALSACGHAGLVDKGREI 372
            +SAC +  L+  G+++
Sbjct: 277 VISACANMELLLLGQQL 293



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 3/158 (1%)

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM-QQKNVFTWTSMIDGYGKNG 329
           VH +L ++    D    ++L+ +Y+KCG+ + A  +F  M   +++ +W++M+  +  N 
Sbjct: 88  VHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFQLMGSSRDLISWSAMVSCFANNN 147

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
              +AL  F  M E    PN   F  A  AC  A  V  G  IF  + +   ++  +   
Sbjct: 148 MGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVVKTGYLQSDVCVG 207

Query: 390 ACMVDLLGRA-GSLEQALKFVLEMPEKPNSDVWAALLS 426
             ++D+  +  G L  A K   +MPE+ N+  W  +++
Sbjct: 208 CGLIDMFVKGRGDLVSAFKVFEKMPER-NAVTWTLMIT 244


>gi|356509996|ref|XP_003523727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Glycine max]
          Length = 586

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 161/437 (36%), Positives = 255/437 (58%), Gaps = 14/437 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H  + K G      +   ++ ++ KCG +  A ++F+ LP R + ++N MIAGY  
Sbjct: 23  GKQVHGVVEKLGFDVIXVVGNSMIDMYSKCGMVGEAARVFNTLPVRNVISWNAMIAGYTN 82

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
               EE+L+L R++   GE PDGYT+S  LKA +C  +        G  +HA +++    
Sbjct: 83  ERNGEEALNLFREMREKGEVPDGYTYSSSLKACSCADAAGE-----GMQIHAALIRHGFP 137

Query: 184 --ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
             A   +  ALVD YVK  + + AR VFD + EK+V+  +++I G+  +  +++A ++FR
Sbjct: 138 YLAQSAVAGALVDLYVKCRRMAEARKVFDRIEEKSVMSWSTLILGYAQEDNLKEAMDLFR 197

Query: 242 KTVEK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVF-FEDVKLGSALVDMYAK 296
           +  E     D  V +++I G         +  ++H   IK  +   ++ + ++++DMY K
Sbjct: 198 ELRESRHRMDGFVLSSII-GVFADFALLEQGKQMHAYTIKVPYGLLEMSVANSVLDMYMK 256

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG   +A  +F  M ++NV +WT MI GYGK+G  N+A+ELF  MQE  ++P+ VT+L  
Sbjct: 257 CGLTVEADALFREMLERNVVSWTVMITGYGKHGIGNKAVELFNEMQENGIEPDSVTYLAV 316

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           LSAC H+GL+ +G++ F  +  +  +KPK+EHYACMVDLLGR G L++A   + +MP KP
Sbjct: 317 LSACSHSGLIKEGKKYFSILCSNQKIKPKVEHYACMVDLLGRGGRLKEAKNLIEKMPLKP 376

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
           N  +W  LLS CR+H DVEM       + +   N+ P  YV +SN  A AG W    ++R
Sbjct: 377 NVGIWQTLLSVCRMHGDVEMGKQVGEILLRREGNN-PANYVMVSNMYAHAGYWKESEKIR 435

Query: 477 EKMKLRGVLKDTGCSWV 493
           E +K +G+ K+ G SWV
Sbjct: 436 ETLKRKGLKKEAGRSWV 452


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 160/475 (33%), Positives = 269/475 (56%), Gaps = 47/475 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IHA I+K+    +  +   L+ ++ KCG +  A + FD +  R + ++N +I  Y +
Sbjct: 170 GIQIHALISKSRYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQ 229

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD-V 182
           NG   ++L +   ++ +G  PD  T + ++ A   C S   +   L   +HA+++K D  
Sbjct: 230 NGPAGKALEVFVMMMDNGVEPDEITLASVVSA---CASWSAIREGL--QIHARVVKRDKY 284

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           + D VL  ALVD Y K  + + AR+VFD M  +NV+  TSM+ G+     V+ A  +F  
Sbjct: 285 RNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVVSETSMVCGYARAASVKAARLMFSN 344

Query: 243 TVEKDIVVYNAMIEGYSISIETA----------RKAL----------------------- 269
            +EK++V +NA+I GY+ + E            R+++                       
Sbjct: 345 MMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLG 404

Query: 270 -EVHCQLIKNVFF------EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
            + H Q++K+ F+       D+ +G++L+DMY KCG ++D   VF+ M +++V +W +MI
Sbjct: 405 RQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMI 464

Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382
            GY +NG    ALE+F  M     +P++VT +G LSAC HAGLV++GR  F SM  +  +
Sbjct: 465 VGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGL 524

Query: 383 KPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAAN 442
            P  +H+ CMVDLLGRAG L++A   +  MP +P++ VW +LL++C++H ++E+    A 
Sbjct: 525 APMKDHFTCMVDLLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAACKVHGNIELGKYVAE 584

Query: 443 EIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTES 497
           ++ +++  +  G YV LSN  A  G+W  V  +R++M+ RGV+K  GCSW+  +S
Sbjct: 585 KLMEIDPLN-SGPYVLLSNMYAELGRWKDVVRVRKQMRQRGVIKQPGCSWIEIQS 638



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 177/396 (44%), Gaps = 73/396 (18%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L ++     L   + S +     +IHA I KT       I  +L+  + KCG  + A ++
Sbjct: 17  LDSSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKV 76

Query: 103 FDELPQRTLSAYNY-------------------------------MIAGYLKNGQVEESL 131
           FD +PQR   +YN                                M++G+ ++ + EE+L
Sbjct: 77  FDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEAL 136

Query: 132 SLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTA 191
                + S     + Y+F   L A   C     L  N+G  +HA I K     D  + +A
Sbjct: 137 RFFVDMHSEDFVLNEYSFGSALSA---CAGLTDL--NMGIQIHALISKSRYLLDVYMGSA 191

Query: 192 LVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKD 247
           LVD Y K G  + A+  FD M  +N++   S+I+ +   G    A E+F       VE D
Sbjct: 192 LVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPD 251

Query: 248 IVVYNAMIEGYSISIETARKALEVHCQLIK-NVFFEDVKLGSALVDMYAKCGKIDDARRV 306
            +   +++   + S    R+ L++H +++K + +  D+ LG+ALVDMYAKC ++++AR V
Sbjct: 252 EITLASVVSACA-SWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLV 310

Query: 307 FD-------------------------------HMQQKNVFTWTSMIDGYGKNGNPNQAL 335
           FD                               +M +KNV +W ++I GY +NG   +A+
Sbjct: 311 FDRMPLRNVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAV 370

Query: 336 ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371
            LF +++   + P + TF   L+AC +   +  GR+
Sbjct: 371 RLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQ 406



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 87/315 (27%), Positives = 148/315 (46%), Gaps = 39/315 (12%)

Query: 133 LVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTAL 192
            V+KLV      D   F+ +L   +C RS   +     R +HA+I+K    ++  +   L
Sbjct: 6   FVQKLVGELCFLDSSPFAKLL--DSCVRSKSGID---ARRIHARIIKTQFSSEIFIQNRL 60

Query: 193 VDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN 252
           VD+Y K G    AR VFD M ++N     +++S     G +++A  +F+   E D   +N
Sbjct: 61  VDAYGKCGYFEDARKVFDRMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWN 120

Query: 253 AMIEGYS------------------------ISIETARKA----------LEVHCQLIKN 278
           AM+ G++                         S  +A  A          +++H  + K+
Sbjct: 121 AMVSGFAQHDRFEEALRFFVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKS 180

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
            +  DV +GSALVDMY+KCG +  A+R FD M  +N+ +W S+I  Y +NG   +ALE+F
Sbjct: 181 RYLLDVYMGSALVDMYSKCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVF 240

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398
            MM +  V+P+ +T    +SAC     + +G +I   + +    +  +     +VD+  +
Sbjct: 241 VMMMDNGVEPDEITLASVVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAK 300

Query: 399 AGSLEQALKFVLEMP 413
              + +A      MP
Sbjct: 301 CRRVNEARLVFDRMP 315


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  291 bits (746), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 166/493 (33%), Positives = 277/493 (56%), Gaps = 37/493 (7%)

Query: 12  FSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHI 71
           FSS   R  +L P   TFP  +++  +L +  +                   G + H   
Sbjct: 140 FSSM--RKLSLKPNRSTFPCAIKSCSALLDLHS-------------------GRQAHQQA 178

Query: 72  TKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESL 131
              G +P+  +S  L+ ++ KCG L+ A  +FDE+  R + ++  MI GY++N     +L
Sbjct: 179 LIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRAL 238

Query: 132 SLVRKLV--SSGERPDGYT----FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
            L ++ +   SG   DG       +M+   S C R +    +++   VH  ++K   + D
Sbjct: 239 LLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVS---EKSITEGVHGFLIKRGFEGD 295

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             +   L+D+Y K G+   +R VFD M E++VI   S+I+ +   G   ++ EIF + V+
Sbjct: 296 LGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVK 355

Query: 246 KDIVVYNAMIEGYSISIETARKALE-----VHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
              + YNA+    ++ +  A    +     +H Q+IK     +V +G++++DMY KCGK+
Sbjct: 356 DGEINYNAVTLS-AVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKV 414

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           + AR+ FD M++KNV +W++M+ GYG +G+  +ALE+F  M    V+PNY+TF+  L+AC
Sbjct: 415 EMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAAC 474

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            HAGL+++G   F++M  ++ ++P +EHY CMVDLLGRAG L++A   +  M  +P+  V
Sbjct: 475 SHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVV 534

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W ALL +CR+H +V++  I+A ++F+L+  +  G YV LSN  A AG+W+ V  +R  MK
Sbjct: 535 WGALLGACRMHKNVDLGEISARKLFELDPKN-CGYYVLLSNIYADAGRWEDVERMRILMK 593

Query: 481 LRGVLKDTGCSWV 493
             G++K  G S V
Sbjct: 594 NSGLVKPPGFSLV 606



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/137 (23%), Positives = 65/137 (47%), Gaps = 2/137 (1%)

Query: 309 HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDK 368
           ++ + NVF+W S+I    ++G+  +AL  F  M++  ++PN  TF  A+ +C     +  
Sbjct: 111 YVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHS 170

Query: 369 GREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
           GR+  +     +  +P +   + +VD+  + G L  A     E+  + N   W ++++  
Sbjct: 171 GRQAHQQ-ALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHR-NIVSWTSMITGY 228

Query: 429 RLHDDVEMANIAANEIF 445
             +DD   A +   E  
Sbjct: 229 VQNDDAHRALLLFKEFL 245


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  291 bits (745), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 162/491 (32%), Positives = 273/491 (55%), Gaps = 32/491 (6%)

Query: 33  LQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLK 92
           +Q  D +  P +A +  + LQ  +       G+K+HAH   +G  P   IS ++L +++K
Sbjct: 78  IQILDHVDRP-SAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIK 136

Query: 93  CGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL----------VSSGE 142
           C +L  A ++FDE+ +R L ++N MI+GY K G+++E+  L  ++          ++SG 
Sbjct: 137 CNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGY 196

Query: 143 -RPDGYTFSMILKASTCCRSNVPLPR----------------NLGRMVHAQILKCDVKAD 185
            R D +  ++ L  +     N    +                +LG+ +H  IL+  +  D
Sbjct: 197 VRHDQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLD 256

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
            V+++AL D Y K G    AR +FD  ++++V+  T+MI  +  +G  E+   +F   ++
Sbjct: 257 GVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLK 316

Query: 246 KDIVVYNAMIEG-YSISIETARKAL--EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
             I        G  +   + A + L  +VH  + +  F       S LV MY KCG I +
Sbjct: 317 SGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKN 376

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           ARRVF+ M + ++ +WTS+I GY +NG P++AL+ F ++ +   QP+++TF+G LSAC H
Sbjct: 377 ARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTH 436

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
           AGLVDKG E F+S++  + +    +HYAC++DLL R+G L++A   + +MP +P+  +WA
Sbjct: 437 AGLVDKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWA 496

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
           +LL  CR+H ++++A  AA  +F++   + P  Y  L+N  A AG W  V E+R+ M  R
Sbjct: 497 SLLGGCRIHGNLKLAKRAAEALFEIEPEN-PATYTTLANIYATAGLWGGVAEVRKVMDAR 555

Query: 483 GVLKDTGCSWV 493
           GV+K  G SW+
Sbjct: 556 GVVKKPGLSWI 566



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 153/335 (45%), Gaps = 15/335 (4%)

Query: 96  LKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           L+ A Q+ D + + + + Y+ ++   L+   ++E + +     +SG  P     + IL  
Sbjct: 74  LREAIQILDHVDRPSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRILDM 133

Query: 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
              C S V   R    M    +   ++         ++  Y K G+   AR +FD M E+
Sbjct: 134 YIKCNSLVNAKRLFDEMAERDLCSWNI---------MISGYAKAGRLQEARKLFDQMTER 184

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMI----EGYSISIETARKALEV 271
           +    T+M SG++     E+A E+FR     +    N          S +I++     E+
Sbjct: 185 DNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEI 244

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
           H  +++     D  + SAL DMY KCG I +AR +FD    ++V +WT+MID Y K G  
Sbjct: 245 HGHILRIGLDLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRR 304

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC 391
            +   LF  + +  + PN  TF G L+AC      + G+++   M R     P     + 
Sbjct: 305 EEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTR-IGFDPSSFAAST 363

Query: 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           +V +  + G+++ A +    MP +P+   W +L+S
Sbjct: 364 LVHMYTKCGNIKNARRVFNGMP-RPDLVSWTSLIS 397


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  291 bits (745), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 156/434 (35%), Positives = 254/434 (58%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+ +H ++ + G +   N+S  L+ ++ KCG++  A  +FD +  RT+ ++N MI GY++
Sbjct: 150 GMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQ 209

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G  E ++ + +K++  G +P   T   ++ A   C     L R  G+ VH  + +  + 
Sbjct: 210 SGDAEGAMLIFQKMLDEGVQPTNVT---VMGALHACADLGDLER--GKFVHKLVDQLKLD 264

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
           +D  +  +L+  Y K  +   A  +F  +  K ++   +MI G+   G V +A   F   
Sbjct: 265 SDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEM 324

Query: 241 -RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
             + ++ D     ++I   +  +   R+A  +H  +I+    ++V + +ALVDMYAKCG 
Sbjct: 325 QSRNIKPDSFTMVSVIPALA-ELSIPRQAKWIHGLVIRRFLDKNVFVMTALVDMYAKCGA 383

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I  AR++FD M  ++V TW +MIDGYG +G    ++ELF  M++  ++PN +TFL ALSA
Sbjct: 384 IHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVELFKEMKKGTIKPNDITFLCALSA 443

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H+GLV++G   FESM++DY ++P M+HY  MVDLLGRAG L QA  F+ +MP KP   
Sbjct: 444 CSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAMVDLLGRAGRLNQAWDFIQKMPIKPGIT 503

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           V+ A+L +C++H +V++   AA EIFKLN +D  G +V L+N  A A  W  V ++R  M
Sbjct: 504 VYGAMLGACKIHKNVDLGEKAAFEIFKLNPDD-GGYHVLLANIYATASMWGKVAKVRTIM 562

Query: 480 KLRGVLKDTGCSWV 493
           +  G+ K  GCS V
Sbjct: 563 EKSGLQKTPGCSLV 576



 Score =  166 bits (419), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 187/378 (49%), Gaps = 11/378 (2%)

Query: 57  NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNY 116
           NSD    G +IH  +  +G   N      ++ ++ KC  +  A  MFD +P+R L  +N 
Sbjct: 43  NSDLK-RGKEIHGSVITSGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNT 101

Query: 117 MIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
           MI+GY +NG  + +L LV ++   G RPD  T   IL A    R    L R +G  VH  
Sbjct: 102 MISGYAQNGFAKVALMLVLRMSEEGHRPDSITIVSILPAVADTR----LLR-IGMAVHGY 156

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
           +L+   ++   + TALVD Y K G  S AR++FD M  + V+   SMI G++  G  E A
Sbjct: 157 VLRAGFESLVNVSTALVDMYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGA 216

Query: 237 EEIFRKTVEKDIVVYNAMIEG---YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDM 293
             IF+K +++ +   N  + G       +    +   VH  + +     DV + ++L+ M
Sbjct: 217 MLIFQKMLDEGVQPTNVTVMGALHACADLGDLERGKFVHKLVDQLKLDSDVSVMNSLISM 276

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           Y+KC ++D A  +F +++ K + +W +MI GY +NG  N+AL  FC MQ   ++P+  T 
Sbjct: 277 YSKCKRVDIAADIFKNLRNKTLVSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTM 336

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           +  + A     +  + + I   + R + +   +     +VD+  + G++  A K + +M 
Sbjct: 337 VSVIPALAELSIPRQAKWIHGLVIRRF-LDKNVFVMTALVDMYAKCGAIHTARK-LFDMM 394

Query: 414 EKPNSDVWAALLSSCRLH 431
              +   W A++     H
Sbjct: 395 NARHVITWNAMIDGYGTH 412



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 80/266 (30%), Positives = 141/266 (53%), Gaps = 10/266 (3%)

Query: 117 MIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
           M+ GY K+  ++ +LS   ++     RP  Y F+ +LK    C  N  L R  G+ +H  
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLK---LCGDNSDLKR--GKEIHGS 55

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
           ++      +    T +V+ Y K  + + A  +FD M E++++C  +MISG+   GF + A
Sbjct: 56  VITSGFSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVA 115

Query: 237 EEIFRKTVEK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVD 292
             +  +  E+    D +   +++   +      R  + VH  +++  F   V + +ALVD
Sbjct: 116 LMLVLRMSEEGHRPDSITIVSILPAVA-DTRLLRIGMAVHGYVLRAGFESLVNVSTALVD 174

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           MY+KCG +  AR +FD M  + V +W SMIDGY ++G+   A+ +F  M +  VQP  VT
Sbjct: 175 MYSKCGSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVT 234

Query: 353 FLGALSACGHAGLVDKGREIFESMER 378
            +GAL AC   G +++G+ + + +++
Sbjct: 235 VMGALHACADLGDLERGKFVHKLVDQ 260


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  291 bits (745), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 159/438 (36%), Positives = 253/438 (57%), Gaps = 18/438 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD--ELPQRTLSAYNYMIAGY 121
           G  +HA + + G   +  +   L+ L+ KC  L  A  +F+   LP+RT+ ++  +++ Y
Sbjct: 138 GRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAY 197

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            +NG+  E+L +   +     +PD      +L A TC +         GR +HA ++K  
Sbjct: 198 AQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQD-----LKQGRSIHASVVKMG 252

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           ++ +  L  +L   Y K G+ + A+I+FD M   N+I   +MISG+   G+  +A ++F 
Sbjct: 253 LEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFH 312

Query: 242 KTVEKD-----IVVYNAMIEGYSI-SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
           + + KD     I + +A+     + S+E AR   E    + ++ + +DV + SAL+DM+A
Sbjct: 313 EMINKDVRPDTISITSAISACAQVGSLEQARSMYEY---VGRSDYRDDVFISSALIDMFA 369

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KCG ++ AR VFD    ++V  W++MI GYG +G   +A+ L+  M+   V PN VTFLG
Sbjct: 370 KCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLG 429

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            L AC H+G+V +G   F  M  D+ + P+ +HYAC++DLLGRAG L+QA + +  MP +
Sbjct: 430 LLMACNHSGMVREGWWFFNLMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQ 488

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
           P   VW ALLS+C+ H  VE+   AA ++F ++ ++  G YV LSN  AAA  WD V E+
Sbjct: 489 PGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSN-TGHYVQLSNLYAAARLWDRVAEV 547

Query: 476 REKMKLRGVLKDTGCSWV 493
           R +MK +G+ KD GCSWV
Sbjct: 548 RVRMKEKGLNKDVGCSWV 565



 Score =  162 bits (411), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 195/373 (52%), Gaps = 16/373 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IHA +   G++ +  +  KL+      G + +A Q+FD+LP+  +  +N +I GY +N 
Sbjct: 39  QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNN 98

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             +++L +   +  +   PD +TF  +LKA   C     L   +GR VHAQ+ +    AD
Sbjct: 99  HFQDALLMYSNMQLARVSPDSFTFPHLLKA---CSGLSHL--QMGRFVHAQVFRLGFDAD 153

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDM--MLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
             +   L+  Y K  +   AR VF+   + E+ ++  T+++S +   G   +A EIF   
Sbjct: 154 VFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHM 213

Query: 241 -RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            +  V+ D V   +++  ++  ++  ++   +H  ++K     +  L  +L  MYAKCG+
Sbjct: 214 RKMDVKPDWVALVSVLNAFT-CLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQ 272

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +  A+ +FD M+  N+  W +MI GY KNG   +A+++F  M    V+P+ ++   A+SA
Sbjct: 273 VATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISA 332

Query: 360 CGHAGLVDKGREIFESMER-DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           C   G +++ R ++E + R DY  +  +   + ++D+  + GS+E A + V +     + 
Sbjct: 333 CAQVGSLEQARSMYEYVGRSDY--RDDVFISSALIDMFAKCGSVEGA-RLVFDRTLDRDV 389

Query: 419 DVWAALLSSCRLH 431
            VW+A++    LH
Sbjct: 390 VVWSAMIVGYGLH 402



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 72/320 (22%), Positives = 156/320 (48%), Gaps = 14/320 (4%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           + +HA++L   ++    L T L+ +    G  ++AR VFD +    +    ++I G+   
Sbjct: 38  KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97

Query: 231 GFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
              +DA  ++       V  D   +  +++  S  +   +    VH Q+ +  F  DV +
Sbjct: 98  NHFQDALLMYSNMQLARVSPDSFTFPHLLKACS-GLSHLQMGRFVHAQVFRLGFDADVFV 156

Query: 287 GSALVDMYAKCGKIDDARRVFDH--MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
            + L+ +YAKC ++  AR VF+   + ++ + +WT+++  Y +NG P +ALE+F  M++ 
Sbjct: 157 QNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKM 216

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMER-DYSMKPKMEHYACMVDLLGRAGSLE 403
            V+P++V  +  L+A      + +GR I  S+ +    ++P +     +  +  + G + 
Sbjct: 217 DVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDL--LISLNTMYAKCGQVA 274

Query: 404 QALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL 463
            A K + +  + PN  +W A++S    +     A    +E+  +N + RP   +++++ +
Sbjct: 275 TA-KILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEM--INKDVRPDT-ISITSAI 330

Query: 464 AAAGKWDSVTELREKMKLRG 483
           +A  +  S+ + R   +  G
Sbjct: 331 SACAQVGSLEQARSMYEYVG 350


>gi|449444429|ref|XP_004139977.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
 gi|449475689|ref|XP_004154524.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  291 bits (744), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 157/435 (36%), Positives = 255/435 (58%), Gaps = 23/435 (5%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +H H+   G +P T +   L+ +++K G L  A  +FDE+P R + ++  MI+ Y  +  
Sbjct: 38  VHEHVFSNGYEPKTFLINTLINMYVKFGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNL 97

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
             ++L  +  ++  G RP+ YT+S +L+A   C   + L     R +H  ILK  +++D 
Sbjct: 98  NHKALDFLILMLREGVRPNMYTYSSVLRA---CDGLLNL-----RQLHGSILKVGLESDV 149

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
            + +AL+D+Y K G+   A  VF+ M+  +++   S+I GF      ++   ++++    
Sbjct: 150 FVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNSDGDETLHLYKRMKRA 209

Query: 247 DIVVYNAMIE-------GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           D V   + +        G ++ +E  R   +VH  ++K  + +D+ L +AL+DMY KCG 
Sbjct: 210 DFVADQSTLTSVLRACTGLAL-LELGR---QVHVHVLK--YDQDLILNNALLDMYCKCGS 263

Query: 300 IDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           ++DA  +F  M  +K+V +W++MI G  +NG    AL+LF  M+    +PNY+T LG L 
Sbjct: 264 LEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMKSKGPKPNYITILGVLF 323

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC HAGLV+ G   F+SM+  + + P  EHY C++DLLGRAG L++A+K + EM  +P++
Sbjct: 324 ACSHAGLVNDGWYYFQSMKEHFGIDPGREHYGCIIDLLGRAGKLDEAVKLIHEMNHEPDA 383

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
             W  LL +CR+H +V++A  AA EI KL+  D  G Y+ LSN  A + KW+ V E+R K
Sbjct: 384 VTWRILLGACRVHKNVDLAIYAAKEILKLDPAD-AGTYILLSNIYANSQKWEDVAEVRRK 442

Query: 479 MKLRGVLKDTGCSWV 493
           M+ RGV KD GCSW+
Sbjct: 443 MRTRGVKKDPGCSWI 457



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 76/289 (26%), Positives = 140/289 (48%), Gaps = 22/289 (7%)

Query: 145 DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSY 204
           D  T+S ++K   CC     + +   R+VH  +     +    L   L++ YVK G    
Sbjct: 15  DAITYSELIK---CCLVRGAVQQ--ARLVHEHVFSNGYEPKTFLINTLINMYVKFGLLDE 69

Query: 205 ARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE----IFRKTVEKDIVVYNAMIEGYSI 260
           AR +FD M ++NV+  T+MIS + +      A +    + R+ V  ++  Y++++     
Sbjct: 70  ARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSVLR---- 125

Query: 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
           + +      ++H  ++K     DV + SAL+D Y+K G+  DA  VF+ M   ++  W S
Sbjct: 126 ACDGLLNLRQLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNS 185

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
           +I G+ +N + ++ L L+  M+      +  T    L AC    L++ GR++   + + Y
Sbjct: 186 IIGGFAQNSDGDETLHLYKRMKRADFVADQSTLTSVLRACTGLALLELGRQVHVHVLK-Y 244

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQA-LKFVLEMPEKPNSDV--WAALLS 426
                + +   ++D+  + GSLE A L F   M EK   DV  W+ +++
Sbjct: 245 DQDLILNN--ALLDMYCKCGSLEDANLLFTRMMTEK---DVISWSTMIA 288



 Score = 85.1 bits (209), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 74/284 (26%), Positives = 131/284 (46%), Gaps = 29/284 (10%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++H  I K G++ +  +   L+  + K G    A  +F+E+    L  +N +I G+ +N 
Sbjct: 135 QLHGSILKVGLESDVFVRSALIDTYSKLGEQHDALNVFNEMITGDLVVWNSIIGGFAQNS 194

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             +E+L L +++  +    D  T + +L+A T     + L   LGR VH  +LK D   D
Sbjct: 195 DGDETLHLYKRMKRADFVADQSTLTSVLRACT----GLALLE-LGRQVHVHVLKYD--QD 247

Query: 186 DVLYTALVDSYVKGGKTSYARIVFD-MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
            +L  AL+D Y K G    A ++F  MM EK+VI  ++MI+G    GF  DA ++F    
Sbjct: 248 LILNNALLDMYCKCGSLEDANLLFTRMMTEKDVISWSTMIAGLAQNGFSADALKLFEAMK 307

Query: 245 EKDIVVYNAMIEGYSISIETARKALEVHCQLIKN--VFFEDVK--LG--------SALVD 292
            K        I G   +          H  L+ +   +F+ +K   G          ++D
Sbjct: 308 SKGPKPNYITILGVLFACS--------HAGLVNDGWYYFQSMKEHFGIDPGREHYGCIID 359

Query: 293 MYAKCGKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNGNPNQAL 335
           +  + GK+D+A ++   M  + +  TW  ++     + N + A+
Sbjct: 360 LLGRAGKLDEAVKLIHEMNHEPDAVTWRILLGACRVHKNVDLAI 403



 Score = 70.9 bits (172), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 48/176 (27%), Positives = 88/176 (50%), Gaps = 5/176 (2%)

Query: 237 EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
           E + R  +  D + Y+ +I+   +     ++A  VH  +  N +     L + L++MY K
Sbjct: 5   EAMHRNRLSADAITYSELIKCCLVR-GAVQQARLVHEHVFSNGYEPKTFLINTLINMYVK 63

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
            G +D+AR +FD M  +NV +WT+MI  Y  +   ++AL+   +M    V+PN  T+   
Sbjct: 64  FGLLDEARNLFDEMPDRNVVSWTTMISAYSNSNLNHKALDFLILMLREGVRPNMYTYSSV 123

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
           L AC   GL++  R++  S+ +   ++  +   + ++D   + G    AL    EM
Sbjct: 124 LRACD--GLLNL-RQLHGSILK-VGLESDVFVRSALIDTYSKLGEQHDALNVFNEM 175


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  290 bits (743), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 157/436 (36%), Positives = 261/436 (59%), Gaps = 16/436 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA+  + G+  N  I   L+ ++ KC  +K+ G  F+ + ++ L ++  +IAGY +
Sbjct: 368 GKEVHAYAIRNGLDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQ 427

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N    E+++L RK+   G   D      +L+A +  +S     RN  R +H  + K D+ 
Sbjct: 428 NECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKS-----RNFIREIHGYVFKRDL- 481

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
           AD +L  A+V+ Y + G   YAR  F+ +  K+++  TSMI+  +  G   +A E+F   
Sbjct: 482 ADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSL 541

Query: 241 -RKTVEKDIVVYNAMIEGYSIS--IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
            +  ++ D +   A+I   S +  + + +K  E+H  LI+  FF +  + S+LVDMYA C
Sbjct: 542 KQTNIQPDSI---AIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACC 598

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G ++++R++F  ++Q+++  WTSMI+  G +G  N+A+ LF  M +  V P+++TFL  L
Sbjct: 599 GTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALL 658

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            AC H+GL+ +G+  FE M+  Y ++P  EHYACMVDLL R+ SLE+A +FV  MP KP+
Sbjct: 659 YACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVRSMPIKPS 718

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
           S+VW ALL +C +H + E+  +AA E+ + +  +  G Y  +SN  AA G+W+ V E+R 
Sbjct: 719 SEVWCALLGACHIHSNKELGELAAKELLQSDTKN-SGKYALISNIFAADGRWNDVEEVRL 777

Query: 478 KMKLRGVLKDTGCSWV 493
           +MK  G+ K+ GCSW+
Sbjct: 778 RMKGNGLKKNPGCSWI 793



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 107/413 (25%), Positives = 203/413 (49%), Gaps = 26/413 (6%)

Query: 28  TFPPKLQNYDSLSNPLTATSLPSALQHY--------INSDTPFYGLKIHAHITKTGVKPN 79
           T  P  Q+   LS    AT  PS L+H         +       G ++HA + K+ +  +
Sbjct: 23  TLNPAFQSLTLLSTHPLAT--PSRLEHAHSLLLDLCVAVKALPQGQQLHARLLKSHL--S 78

Query: 80  TNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVS 139
             ++ KLL ++ KCG+LK A ++FDE+ +RT+  +N M+  ++ +G+  E++ L +++  
Sbjct: 79  AFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYLEAIELYKEMRV 138

Query: 140 SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKG 199
            G   D  TF  +LKA      +      LG  +H   +KC       +  AL+  Y K 
Sbjct: 139 LGVAIDACTFPSVLKACGALGES-----RLGAEIHGVAVKCGFGEFVFVCNALIAMYGKC 193

Query: 200 GKTSYARIVFD--MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIV----VYNA 253
           G    AR++FD  MM +++ +   S+IS  +++G   +A  +FR+  E  +      + A
Sbjct: 194 GDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFVA 253

Query: 254 MIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK 313
            ++G        +  + +H   +K+  F DV + +AL+ MYAKCG+++DA RVF  M  +
Sbjct: 254 ALQGVE-DPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRMEDAERVFASMLCR 312

Query: 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF 373
           +  +W +++ G  +N     AL  F  MQ    +P+ V+ L  ++A G +G +  G+E+ 
Sbjct: 313 DYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEVH 372

Query: 374 ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
               R+  +   M+    ++D+  +   ++  + +  E   + +   W  +++
Sbjct: 373 AYAIRN-GLDSNMQIGNTLIDMYAKCCCVKH-MGYAFECMHEKDLISWTTIIA 423



 Score = 43.5 bits (101), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 54/113 (47%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           + ++ SAL    N  +   G +IH  + + G      I+  L+ ++  CG ++ + +MF 
Sbjct: 550 SIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMFH 609

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
            + QR L  +  MI     +G   E+++L +K+      PD  TF  +L A +
Sbjct: 610 SVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDHITFLALLYACS 662


>gi|222612904|gb|EEE51036.1| hypothetical protein OsJ_31684 [Oryza sativa Japonica Group]
          Length = 637

 Score =  290 bits (743), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 160/464 (34%), Positives = 263/464 (56%), Gaps = 15/464 (3%)

Query: 40  SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYA 99
           + P    SL +A   Y + D       IHAH+  +    +  +   L+ L+ KCGA+  A
Sbjct: 62  ATPRLYHSLITACARYRSLDD---ARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADA 118

Query: 100 GQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCC 159
            ++FD +P R + ++  +IAGY +N   +E+L L+  ++    +P+G+TF+ +LKA+   
Sbjct: 119 RRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGAS 178

Query: 160 RSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVIC 219
            S+      +G  +HA  +K D   D  + +AL+D Y + G+   A  VFD +  KN + 
Sbjct: 179 ASS-----GIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVS 233

Query: 220 STSMISGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQL 275
             ++I+GF  +G  E       E+ R   E     Y+++    +  I    +   VH  +
Sbjct: 234 WNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIA-GIGALEQGKWVHAHM 292

Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
           IK+       +G+ ++DMYAK G + DAR+VFD + +K+V TW SM+  + + G   +A+
Sbjct: 293 IKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAV 352

Query: 336 ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDL 395
             F  M++C V  N +TFL  L+AC H GLV +G++ F+ M ++Y+++P+++HY  +VDL
Sbjct: 353 THFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMM-KEYNLEPEIDHYVTVVDL 411

Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA 455
           LGRAG L  AL F+ +MP KP + VW ALL SCR+H + ++   AA+ +F+L+ +D  G 
Sbjct: 412 LGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDD-TGP 470

Query: 456 YVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
            V L N  A+ G+WD+   +R+ MK  GV K+  CSWV  E+ +
Sbjct: 471 PVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSV 514


>gi|110289149|gb|ABB47711.2| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 697

 Score =  290 bits (743), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 160/464 (34%), Positives = 263/464 (56%), Gaps = 15/464 (3%)

Query: 40  SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYA 99
           + P    SL +A   Y + D       IHAH+  +    +  +   L+ L+ KCGA+  A
Sbjct: 62  ATPRLYHSLITACARYRSLDD---ARAIHAHLAGSQFAGSVFLDNSLIHLYCKCGAVADA 118

Query: 100 GQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCC 159
            ++FD +P R + ++  +IAGY +N   +E+L L+  ++    +P+G+TF+ +LKA+   
Sbjct: 119 RRVFDGMPARDMCSWTSLIAGYAQNDMPDEALGLLPGMLRGRFKPNGFTFASLLKAAGAS 178

Query: 160 RSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVIC 219
            S+      +G  +HA  +K D   D  + +AL+D Y + G+   A  VFD +  KN + 
Sbjct: 179 ASS-----GIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVS 233

Query: 220 STSMISGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQL 275
             ++I+GF  +G  E       E+ R   E     Y+++    +  I    +   VH  +
Sbjct: 234 WNALIAGFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIA-GIGALEQGKWVHAHM 292

Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
           IK+       +G+ ++DMYAK G + DAR+VFD + +K+V TW SM+  + + G   +A+
Sbjct: 293 IKSGERLSAFVGNTILDMYAKSGSMIDARKVFDRVDKKDVVTWNSMLTAFAQYGLGREAV 352

Query: 336 ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDL 395
             F  M++C V  N +TFL  L+AC H GLV +G++ F+ M ++Y+++P+++HY  +VDL
Sbjct: 353 THFEEMRKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMM-KEYNLEPEIDHYVTVVDL 411

Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA 455
           LGRAG L  AL F+ +MP KP + VW ALL SCR+H + ++   AA+ +F+L+ +D  G 
Sbjct: 412 LGRAGLLNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDD-TGP 470

Query: 456 YVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
            V L N  A+ G+WD+   +R+ MK  GV K+  CSWV  E+ +
Sbjct: 471 PVLLYNIYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSV 514


>gi|356523117|ref|XP_003530188.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14330-like [Glycine max]
          Length = 650

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 162/441 (36%), Positives = 261/441 (59%), Gaps = 18/441 (4%)

Query: 63  YGLKIHAHITKTG--VKPNTNISIKLLILHLKCGALKYAGQMF---DELPQRTLSAYNYM 117
           +G K+H H+ ++   V  N  +  KL+ L+  CG +  A ++F   DE P      +  M
Sbjct: 88  HGRKLHLHLLRSQNRVLENPTLKTKLITLYSVCGRVNEARRVFQIDDEKPPEE-PVWVAM 146

Query: 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQI 177
             GY +NG   E+L L R ++S   +P  + FSM LKA  C   +  L   +GR +HAQI
Sbjct: 147 AIGYSRNGFSHEALLLYRDMLSCCVKPGNFAFSMALKA--CSDLDNAL---VGRAIHAQI 201

Query: 178 LKCDV-KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
           +K DV +AD V+  AL+  YV+ G       VF+ M ++NV+   ++I+GF  QG V + 
Sbjct: 202 VKHDVGEADQVVNNALLGLYVEIGCFDEVLKVFEEMPQRNVVSWNTLIAGFAGQGRVFET 261

Query: 237 EEIFRKTVEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVFFEDVKLGSALVD 292
              FR  ++++ + ++ +     + +     AL    E+H Q++K+    DV L ++L+D
Sbjct: 262 LSAFR-VMQREGMGFSWITLTTMLPVCAQVTALHSGKEIHGQILKSRKNADVPLLNSLMD 320

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           MYAKCG+I    +VFD M  K++ +W +M+ G+  NG  ++AL LF  M    ++PN +T
Sbjct: 321 MYAKCGEIGYCEKVFDRMHSKDLTSWNTMLAGFSINGQIHEALCLFDEMIRYGIEPNGIT 380

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
           F+  LS C H+GL  +G+ +F ++ +D+ ++P +EHYAC+VD+LGR+G  ++AL     +
Sbjct: 381 FVALLSGCSHSGLTSEGKRLFSNVMQDFGVQPSLEHYACLVDILGRSGKFDEALSVAENI 440

Query: 413 PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSV 472
           P +P+  +W +LL+SCRL+ +V +A + A  +F++  N+ PG YV LSN  A AG W+ V
Sbjct: 441 PMRPSGSIWGSLLNSCRLYGNVALAEVVAERLFEIEPNN-PGNYVMLSNIYANAGMWEDV 499

Query: 473 TELREKMKLRGVLKDTGCSWV 493
             +RE M L G+ KD GCSW+
Sbjct: 500 KRVREMMALTGMKKDAGCSWI 520


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  290 bits (742), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 153/433 (35%), Positives = 257/433 (59%), Gaps = 13/433 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++H +  + G + +  ++   +  + KCG L  A ++F  +  +T++++N +I G  +NG
Sbjct: 257 ELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNG 316

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              ++L+L  ++  SG  PD +T   +L AS   +S        G+ VH  +L+  ++ D
Sbjct: 317 DPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKS-----LRYGKEVHGFVLRHGLEID 371

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             +  +L+  Y+  G++S AR++FD M EK+ +   +MISG+   G  EDA  +FRK V 
Sbjct: 372 SFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVS 431

Query: 246 -----KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
                 DI V + +  G        R   E HC  +K +  EDV +  + +DMYAK G I
Sbjct: 432 DGFQPSDIAVVSVL--GACSQQSALRLGKETHCYALKALLMEDVFVACSTIDMYAKSGCI 489

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
            ++R VFD ++ K++ +W ++I  YG +G+  +++ELF  M++    P+  TF+G L+ C
Sbjct: 490 KESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTFIGILTVC 549

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            HAGLV++G + F  M+  + ++PK+EHYAC++D+LGRAG L+ AL+ V EMPE+P+S V
Sbjct: 550 SHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQPDSRV 609

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W++LLS CR   ++E+  I A ++ +L   +    YV+LSN  A +G+WD V  +R+ +K
Sbjct: 610 WSSLLSFCRNFGELEIGQIVAEKLLELEPKNVEN-YVSLSNLYAGSGRWDDVRRVRQMIK 668

Query: 481 LRGVLKDTGCSWV 493
             G+ KD GCSW+
Sbjct: 669 DIGLQKDAGCSWI 681



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 163/332 (49%), Gaps = 11/332 (3%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           + P  ++    S     G  IH  + K G+  +  +   L+ ++ K G +  A ++F  +
Sbjct: 33  TFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYM 92

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSS--GERPDGYTFSMILKASTCCRSNVP 164
           P R L ++N +I+G+ +NG  ++   ++ ++++   G  PD  T   +L    C R    
Sbjct: 93  PVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVL--PVCARE--- 147

Query: 165 LPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
           +   +G  +H   +K  +  D  +  +LVD Y K G  + A+++FD    KN +   +MI
Sbjct: 148 VDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMI 207

Query: 225 SGFMSQGFVEDAEEIFRK-TVEKDIVVYNAMIEGY---SISIETARKALEVHCQLIKNVF 280
            G  ++G++ +A  +FR+  +++DI V    +       + I   R   E+H   I++ F
Sbjct: 208 GGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGF 267

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             D  + +  V  YAKCG +  A RVF  M+ K V +W ++I G  +NG+P +AL L+  
Sbjct: 268 QYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQ 327

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           M    + P++ T    L A  H   +  G+E+
Sbjct: 328 MTYSGLVPDWFTIGSLLLASAHLKSLRYGKEV 359



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 86/322 (26%), Positives = 150/322 (46%), Gaps = 22/322 (6%)

Query: 123 KNGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           +N    +++ +  KL++  E   D +TF  ++KA T       L R LG ++H  ++K  
Sbjct: 7   RNELYSDAIDMFVKLITDTEFNADNFTFPCVIKACTG-----SLDRGLGEVIHGMVIKMG 61

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +  D  +  AL+  Y K G    A  VF  M  +N++   S+ISGF   GF +D  ++  
Sbjct: 62  LLLDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLV 121

Query: 242 KTVEKDIVVYNAMIEGYSISIETARK-----ALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
           + +  +  +   +    ++    AR+      + +H   +K    EDV++ ++LVDMY+K
Sbjct: 122 EMMAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSK 181

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ-ECCVQPNYVTFLG 355
           CG + +A+ +FD   +KN  +W +MI G    G   +A  LF  MQ +  ++ N VT L 
Sbjct: 182 CGYLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLN 241

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACM----VDLLGRAGSLEQALKFVLE 411
            L AC     +   +E+       YS++   ++   +    V    + G L  A +    
Sbjct: 242 ILPACLEISQLRSLKEL-----HGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYS 296

Query: 412 MPEKPNSDVWAALLSSCRLHDD 433
           M E    + W AL+  C  + D
Sbjct: 297 M-ETKTVNSWNALIGGCAQNGD 317



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 75/271 (27%), Positives = 137/271 (50%), Gaps = 22/271 (8%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           YG ++H  + + G++ ++ I I LL L++ CG    A  +FD + +++  ++N MI+GY 
Sbjct: 355 YGKEVHGFVLRHGLEIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYS 414

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +NG  E++L L RKLVS G +P       +L A   C     L   LG+  H   LK  +
Sbjct: 415 QNGLPEDALILFRKLVSDGFQPSDIAVVSVLGA---CSQQSAL--RLGKETHCYALKALL 469

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             D  +  + +D Y K G    +R VFD +  K++    ++I+ +   G  E++ E+F +
Sbjct: 470 MEDVFVACSTIDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFER 529

Query: 243 TVEKDIVVYNAMIEGYS-ISIET-------ARKALEVHCQLIKNVFFEDVKLG--SALVD 292
             +        M +G++ I I T         + L+   ++ +N    + KL   + ++D
Sbjct: 530 MRK-----VGQMPDGFTFIGILTVCSHAGLVEEGLKYFNEM-QNFHGIEPKLEHYACVMD 583

Query: 293 MYAKCGKIDDARRVFDHM-QQKNVFTWTSMI 322
           M  + G++DDA R+   M +Q +   W+S++
Sbjct: 584 MLGRAGRLDDALRLVHEMPEQPDSRVWSSLL 614


>gi|356540333|ref|XP_003538644.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Glycine max]
          Length = 721

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 168/489 (34%), Positives = 258/489 (52%), Gaps = 45/489 (9%)

Query: 42  PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGV-KPNTNISIKLLILHLKCGALKYAG 100
           PL   S P  L+          GL+IH   +K G    +  I   L+ ++  CG +  A 
Sbjct: 112 PLDRFSFPPLLKAVSKLSALNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDAR 171

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
            +FD++  R +  +N MI GY +N   +  L L  ++ +SG  PD      +L  S C  
Sbjct: 172 FLFDKMSHRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVL--SACAH 229

Query: 161 SNVPLPRNL--GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI 218
           +      NL  G+ +H  I     +    + T+LV+ Y   G    AR V+D +  K+++
Sbjct: 230 AG-----NLSYGKAIHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMV 284

Query: 219 CSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISI----------ETARK- 267
            ST+M+SG+   G V+DA  IF + VEKD+V ++AMI GY+ S           E  R+ 
Sbjct: 285 VSTAMLSGYAKLGMVQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRR 344

Query: 268 -----------------------ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDAR 304
                                  A  +H    KN F   + + +AL+DMYAKCG +  AR
Sbjct: 345 IVPDQITMLSVISACANVGALVQAKWIHTYADKNGFGRTLPINNALIDMYAKCGNLVKAR 404

Query: 305 RVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG 364
            VF++M +KNV +W+SMI+ +  +G+ + A+ LF  M+E  ++PN VTF+G L AC HAG
Sbjct: 405 EVFENMPRKNVISWSSMINAFAMHGDADSAIALFHRMKEQNIEPNGVTFIGVLYACSHAG 464

Query: 365 LVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAAL 424
           LV++G++ F SM  ++ + P+ EHY CMVDL  RA  L +A++ +  MP  PN  +W +L
Sbjct: 465 LVEEGQKFFSSMINEHRISPQREHYGCMVDLYCRANHLRKAMELIETMPFPPNVIIWGSL 524

Query: 425 LSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGV 484
           +S+C+ H ++E+   AA  + +L   D  GA V LSN  A   +WD V  +R+ MK +GV
Sbjct: 525 MSACQNHGEIELGEFAATRLLELEP-DHDGALVVLSNIYAKEKRWDDVGLVRKLMKHKGV 583

Query: 485 LKDTGCSWV 493
            K+  CS +
Sbjct: 584 SKEKACSRI 592



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 173/378 (45%), Gaps = 42/378 (11%)

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
           AL YA  +F  +P       N ++  + +    E +LSL   L  +G   D ++F  +LK
Sbjct: 64  ALDYALSLFSHIPNPPTRFSNQLLRQFSRGPTPENTLSLYLHLRRNGFPLDRFSFPPLLK 123

Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCD-VKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
           A +   +      NLG  +H    K     AD  + +AL+  Y   G+   AR +FD M 
Sbjct: 124 AVSKLSA-----LNLGLEIHGLASKFGFFHADPFIQSALIAMYAACGRIMDARFLFDKMS 178

Query: 214 EKNVICSTSMISGFMSQGFVEDA----EEIFRKTVEKDIVV---------------YNAM 254
            ++V+    MI G+      +      EE+     E D ++               Y   
Sbjct: 179 HRDVVTWNIMIDGYSQNAHYDHVLKLYEEMKTSGTEPDAIILCTVLSACAHAGNLSYGKA 238

Query: 255 IE------GYSIS--IETARKALEVHC---QLIKNVFFE----DVKLGSALVDMYAKCGK 299
           I       G+ +   I+T+   +  +C    L + V+ +     + + +A++  YAK G 
Sbjct: 239 IHQFIKDNGFRVGSHIQTSLVNMYANCGAMHLAREVYDQLPSKHMVVSTAMLSGYAKLGM 298

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           + DAR +FD M +K++  W++MI GY ++  P +AL+LF  MQ   + P+ +T L  +SA
Sbjct: 299 VQDARFIFDRMVEKDLVCWSAMISGYAESYQPLEALQLFNEMQRRRIVPDQITMLSVISA 358

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C + G + + + I    +++      +     ++D+  + G+L +A +    MP K N  
Sbjct: 359 CANVGALVQAKWIHTYADKN-GFGRTLPINNALIDMYAKCGNLVKAREVFENMPRK-NVI 416

Query: 420 VWAALLSSCRLHDDVEMA 437
            W++++++  +H D + A
Sbjct: 417 SWSSMINAFAMHGDADSA 434


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 168/454 (37%), Positives = 250/454 (55%), Gaps = 14/454 (3%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           +T+  S L  + ++D   +  ++H H  +TG+  +  +    + ++++CG++  A  +FD
Sbjct: 524 STTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFIHMYIRCGSIDDARLLFD 583

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP 164
           +L  R ++ +N MI G  +     E+LSL  ++   G  PD  TF  IL A      NV 
Sbjct: 584 KLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSA------NVD 637

Query: 165 LPR-NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
                  + VH+      +  D  +  ALV +Y K G   YA+ VFD M+E+NV   T M
Sbjct: 638 EEALEWVKEVHSHATDAGL-VDLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMM 696

Query: 224 ISGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
           I G    G   DA     ++ R+ +  D   Y +++   + S        EVH   +   
Sbjct: 697 IGGLAQHGCGHDAFSHFLQMLREGIVPDATTYVSILSACA-STGALEWVKEVHNHAVSAG 755

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
              D+++G+ALV MYAKCG IDDAR VFD M +++VF+WT MI G  ++G   +AL+ F 
Sbjct: 756 LVSDLRVGNALVHMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFV 815

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
            M+    +PN  +++  L+AC HAGLVD+GR  F SM +DY ++P MEHY CMVDLLGRA
Sbjct: 816 KMKSEGFKPNGYSYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRA 875

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVAL 459
           G LE+A  F+L MP +P+   W ALL +C  + ++EMA  AA E  KL        YV L
Sbjct: 876 GLLEEAELFILNMPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKS-ASTYVLL 934

Query: 460 SNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           SN  AA GKW+    +R  M+ +G+ K+ G SW+
Sbjct: 935 SNIYAATGKWEQKLLVRSMMQRKGIRKEPGRSWI 968



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 127/437 (29%), Positives = 217/437 (49%), Gaps = 57/437 (13%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           S  + LQ  +  +      ++H  I K+G++ N  ++ KLL ++++CG L+ A Q+FD+L
Sbjct: 120 SYVNILQRCLKQEDILLAKQVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKL 179

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
            ++ +  +  MI GY + G  E+++ +  K+     +P+  T+  ILKA  C     P+ 
Sbjct: 180 LKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQECGQPNEITYLSILKACCC-----PVN 234

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
              G+ +HA I++   ++D  + TALV+ YVK G    A+++FD M+E+NVI  T MI G
Sbjct: 235 LKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGG 294

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFE 282
               G  ++A  +F + ++++  + N+      ++   +  ALE    VH   +      
Sbjct: 295 LAHYGRGQEAFHLFLQ-MQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLAL 353

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           D+++G+ALV MYAK G IDDAR VFD M ++++F+WT MI G  ++G   +A  LF  MQ
Sbjct: 354 DLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQ 413

Query: 343 ECCVQPNYVTFLGALSACG---------------HA----------------------GL 365
                PN  T+L  L+A                 HA                      G 
Sbjct: 414 RNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGS 473

Query: 366 VDKGREIFESM-ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK---PNSDVW 421
           +D  R +F+ M +RD      +  +  M+  L + G   +A    L+M ++   P+S  +
Sbjct: 474 IDDARLVFDGMCDRD------VISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTY 527

Query: 422 AALLSSCRLHDDVEMAN 438
            +LL++    D +E  N
Sbjct: 528 LSLLNTHGSTDALEWVN 544



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 153/292 (52%), Gaps = 11/292 (3%)

Query: 128 EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV 187
           ++++++++  V  G   D +++  IL+   C +    L   L + VH  I+K  ++ +  
Sbjct: 100 KDAVAMLKIRVQQGIAIDSFSYVNILQ--RCLKQEDIL---LAKQVHVCIIKSGMEQNLY 154

Query: 188 LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK- 246
           +   L+  Y++ G+   AR VFD +L+KN+   T+MI G+   G  EDA  ++ K  ++ 
Sbjct: 155 VANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMRQEC 214

Query: 247 ---DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
              + + Y ++++     +   +   ++H  +I++ F  DV++ +ALV+MY KCG I+DA
Sbjct: 215 GQPNEITYLSILKACCCPVNL-KWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIEDA 273

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
           + +FD M ++NV +WT MI G    G   +A  LF  MQ     PN  T++  L+A   A
Sbjct: 274 QLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANASA 333

Query: 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
           G ++  +E+  S   +  +   +     +V +  ++GS++ A      M E+
Sbjct: 334 GALEWVKEV-HSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMTER 384


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 164/435 (37%), Positives = 253/435 (58%), Gaps = 13/435 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+K+H+ + K G + +  + I L+ L+ KCG +  A ++FD++P +  +++   I+GY+ 
Sbjct: 127 GVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVG 186

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G+  E++ + R+L+  G RPD  +FS++   S C R+        G  +   I +  + 
Sbjct: 187 VGKCREAIDMFRRLLEMGLRPD--SFSLVEVLSACKRTG---DLRSGEWIDEYITENGMV 241

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +  + TALVD Y K G    AR VFD MLEKN++  +SMI G+ S G  ++A ++F K 
Sbjct: 242 RNVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKM 301

Query: 244 VEKDIVVYNAMIEGYSISIETAR-KALEV---HCQLIK-NVFFEDVKLGSALVDMYAKCG 298
           + + +      + G   S   AR  ALE+      LI  N F ++  LG+AL+DMYAKCG
Sbjct: 302 LNEGLKPDCYAMVGVLCS--CARLGALELGDWASNLINGNEFLDNSVLGTALIDMYAKCG 359

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           ++D A  VF  M++K+   W + I G   +G+   AL LF  M++  ++P+  TF+G L 
Sbjct: 360 RMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLC 419

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC HAGLV++GR  F SME  +++ P++EHY CMVDLLGRAG L++A + +  MP + N+
Sbjct: 420 ACTHAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANA 479

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            VW ALL  CRLH D ++  +   ++  L      G YV LSN  AA+ KW+   ++R  
Sbjct: 480 IVWGALLGGCRLHRDTQLVEVVLKKLIALEPW-HSGNYVLLSNIYAASHKWEEAAKIRSI 538

Query: 479 MKLRGVLKDTGCSWV 493
           M  RGV K  G SW+
Sbjct: 539 MSERGVKKIPGYSWI 553



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 107/374 (28%), Positives = 188/374 (50%), Gaps = 10/374 (2%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           IHA + + G+  +T +  K+L      G   Y+ ++ D+  +  +  +N MI G + N  
Sbjct: 29  IHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLNDC 88

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
            +ES+ +   +   G  PD +TF  +LKA  C R    L   LG  +H+ ++K   +AD 
Sbjct: 89  FQESIEIYHSMRKEGLSPDSFTFPFVLKA--CAR---VLDSELGVKMHSLVVKAGCEADA 143

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
            +  +L++ Y K G    A  VFD + +KN    T+ ISG++  G   +A ++FR+ +E 
Sbjct: 144 FVKISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEM 203

Query: 247 DIVVYN-AMIEGYSISIETA--RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
            +   + +++E  S    T   R    +   + +N    +V + +ALVD Y KCG ++ A
Sbjct: 204 GLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVATALVDFYGKCGNMERA 263

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
           R VFD M +KN+ +W+SMI GY  NG P +AL+LF  M    ++P+    +G L +C   
Sbjct: 264 RSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARL 323

Query: 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA 423
           G ++ G      +  +  +   +   A ++D+  + G +++A + V     K +  VW A
Sbjct: 324 GALELGDWASNLINGNEFLDNSVLGTA-LIDMYAKCGRMDRAWE-VFRGMRKKDRVVWNA 381

Query: 424 LLSSCRLHDDVEMA 437
            +S   +   V+ A
Sbjct: 382 AISGLAMSGHVKDA 395


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 157/434 (36%), Positives = 248/434 (57%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH +  + G +   N++  +L  + KCG+++ A  +F  +  R + ++N MI GY +
Sbjct: 262 GRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQ 321

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG+ EE+ +   K++  G  P   +    L A   C +   L R  GR VH  + +  + 
Sbjct: 322 NGESEEAFATFLKMLDEGVEPTNVSMMGALHA---CANLGDLER--GRYVHRLLDEKKIG 376

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +  +L+  Y K  +   A  VF  +  K V+   +MI G+   G V +A  +F + 
Sbjct: 377 FDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEM 436

Query: 244 VEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
              DI        ++I   +  +   R+A  +H   I+ +  ++V + +AL+D +AKCG 
Sbjct: 437 QSHDIKPDSFTLVSVITALA-DLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGA 495

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I  AR++FD MQ+++V TW +MIDGYG NG+  +AL+LF  MQ   V+PN +TFL  ++A
Sbjct: 496 IQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAA 555

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H+GLV++G   FESM+ +Y ++P M+HY  MVDLLGRAG L+ A KF+ +MP KP   
Sbjct: 556 CSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVKPGIT 615

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           V  A+L +CR+H +VE+    A+E+F L+ +D  G +V L+N  A+A  WD V  +R  M
Sbjct: 616 VLGAMLGACRIHKNVELGEKTADELFDLDPDD-GGYHVLLANMYASASMWDKVARVRTAM 674

Query: 480 KLRGVLKDTGCSWV 493
           + +G+ K  GCS V
Sbjct: 675 EKKGIQKTPGCSLV 688



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 119/462 (25%), Positives = 213/462 (46%), Gaps = 54/462 (11%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH  +   G + N      ++ L+ KC  ++ A +MF+ +PQR L ++N ++AGY +
Sbjct: 161 GREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQ 220

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG    ++ +V ++  +G++PD  T   +L A    ++       +GR +H    +   +
Sbjct: 221 NGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKA-----LRIGRSIHGYAFRAGFE 275

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               + TA++D+Y K G    AR+VF  M  +NV+   +MI G+   G  E+A   F K 
Sbjct: 276 YMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKM 335

Query: 244 VEKDIVVYNAMIEG---YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           +++ +   N  + G      ++    +   VH  L +     DV + ++L+ MY+KC ++
Sbjct: 336 LDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRV 395

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           D A  VF +++ K V TW +MI GY +NG  N+AL LFC MQ   ++P+  T +  ++A 
Sbjct: 396 DIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITAL 455

Query: 361 G---------------------------------HA--GLVDKGREIFESMERDYSMKPK 385
                                             HA  G +   R++F+ M+  + +   
Sbjct: 456 ADLSVTRQAKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTARKLFDLMQERHVIT-- 513

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSCRLHDDVEMANIAAN 442
              +  M+D  G  G   +AL    EM     KPN   + +++++C  H  +    +   
Sbjct: 514 ---WNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLSVIAACS-HSGLVEEGMYYF 569

Query: 443 EIFKLNANDRP--GAYVALSNTLAAAGKWDSVTELREKMKLR 482
           E  K N    P    Y A+ + L  AG+ D   +  + M ++
Sbjct: 570 ESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVK 611



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 79/306 (25%), Positives = 151/306 (49%), Gaps = 10/306 (3%)

Query: 71  ITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEES 130
           I K G         KL+ L  K  ++  A ++F+ +  +    Y+ M+ GY KN  + ++
Sbjct: 67  IIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDA 126

Query: 131 LSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT 190
           +    ++      P  Y F+ +L+ S     N+ L R  GR +H  ++    +++    T
Sbjct: 127 VRFYERMRCDEVMPVVYDFTYLLQLSG---ENLDLRR--GREIHGMVITNGFQSNLFAMT 181

Query: 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK---- 246
           A+V+ Y K  +   A  +F+ M +++++   ++++G+   GF   A ++  +  E     
Sbjct: 182 AVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKP 241

Query: 247 DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRV 306
           D +   +++   +  ++  R    +H    +  F   V + +A++D Y KCG +  AR V
Sbjct: 242 DSITLVSVLPAVA-DLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGSVRSARLV 300

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           F  M  +NV +W +MIDGY +NG   +A   F  M +  V+P  V+ +GAL AC + G +
Sbjct: 301 FKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDL 360

Query: 367 DKGREI 372
           ++GR +
Sbjct: 361 ERGRYV 366



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 140/299 (46%), Gaps = 26/299 (8%)

Query: 27  QTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKL 86
           + F   L+  D    P T  S+  AL    N      G  +H  + +  +  + ++   L
Sbjct: 327 EAFATFLKMLDEGVEP-TNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFDVSVMNSL 385

Query: 87  LILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDG 146
           + ++ KC  +  A  +F  L  +T+  +N MI GY +NG V E+L+L  ++ S   +PD 
Sbjct: 386 ISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEMQSHDIKPDS 445

Query: 147 YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR 206
           +T   ++ A     +++ + R   + +H   ++  +  +  + TAL+D++ K G    AR
Sbjct: 446 FTLVSVITA----LADLSVTRQ-AKWIHGLAIRTLMDKNVFVCTALIDTHAKCGAIQTAR 500

Query: 207 IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETAR 266
            +FD+M E++VI   +MI G+ + G   +A ++F +       + N  ++   I+  +  
Sbjct: 501 KLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNE-------MQNGSVKPNEITFLSVI 553

Query: 267 KALEVHCQLIKN--VFFEDVKLG----------SALVDMYAKCGKIDDARRVFDHMQQK 313
            A   H  L++    +FE +K             A+VD+  + G++DDA +    M  K
Sbjct: 554 AACS-HSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVK 611


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  289 bits (739), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 148/431 (34%), Positives = 253/431 (58%), Gaps = 9/431 (2%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++H +  + G++ N  ++   +  + +CGAL  + ++FD +  +T+S++N ++ GY +N 
Sbjct: 328 ELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNS 387

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              ++L L  ++  SG  PD +T   +L A +  +S      + G  +H   L+  +  D
Sbjct: 388 DPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKS-----LHYGEEIHGFALRNGLAVD 442

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             +  +L+  Y+  GK   A+++FD M  ++++    MI+G+   G  ++A  +FR+ + 
Sbjct: 443 PFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLS 502

Query: 246 KDIVVYNAMIE---GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
             I  Y   I    G    +   R   E+HC  +K    ED+ + S+++DMYAK G I  
Sbjct: 503 DGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGL 562

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           ++R+FD +++K+V +W  +I GYG +G   +ALELF  M    ++P+  TF G L AC H
Sbjct: 563 SQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSH 622

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
           AGLV+ G E F  M   ++++PK+EHY C+VD+LGRAG ++ AL+ + EMP  P+S +W+
Sbjct: 623 AGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWS 682

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
           +LLSSCR+H ++ +    AN++ +L   ++P  YV +SN  A +GKWD V  +R +MK  
Sbjct: 683 SLLSSCRIHGNLGLGEKVANKLLELEP-EKPENYVLISNLFAGSGKWDDVRRVRGRMKDI 741

Query: 483 GVLKDTGCSWV 493
           G+ KD GCSW+
Sbjct: 742 GLQKDAGCSWI 752



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 159/306 (51%), Gaps = 14/306 (4%)

Query: 64  GLKIHAHITKTGVKPNTNI-SIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G ++H  ++ +    N  + + +++ ++  CG+   +  +FD+L ++ L  +N +++ Y 
Sbjct: 17  GRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYT 76

Query: 123 KNGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           +N   E+++S+  +L+S  E +PD +T   ++KA   C   + L   LG+++H    K D
Sbjct: 77  RNELFEDAMSIFSELISVTEHKPDNFTLPCVIKA---CAGLLDL--GLGQIIHGMATKMD 131

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           + +D  +  AL+  Y K G    A  VF+ M E+N++   S+I GF   GF++++   FR
Sbjct: 132 LVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFR 191

Query: 242 KTV--EKDIVVYNAMIEGY---SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
           + +  E+  V   A +          E   K + VH   +K    E++ + ++L+DMY+K
Sbjct: 192 EMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSK 251

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ--ECCVQPNYVTFL 354
           C  + +A+ +FD   +KN+ +W SMI GY +  +  +   L   MQ  +  ++ +  T L
Sbjct: 252 CRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTIL 311

Query: 355 GALSAC 360
             L  C
Sbjct: 312 NVLPVC 317



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 80/316 (25%), Positives = 156/316 (49%), Gaps = 12/316 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH   TK  +  +  +   L+ ++ KCG ++ A ++F+ +P+R L ++N +I G+ +
Sbjct: 120 GQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSE 179

Query: 124 NGQVEESLSLVRKLVSSGER--PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           NG ++ES +  R+++   E   PD  T   +L     C     + +  G  VH   +K  
Sbjct: 180 NGFLQESFNAFREMLVGEESFVPDVATLVTVLPV---CAGEEDIEK--GMAVHGLAVKLG 234

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +  + ++  +L+D Y K    S A+++FD   +KN++   SMI G+  +  V     + +
Sbjct: 235 LNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQ 294

Query: 242 KTVEKDIVVYN---AMIEGYSISIETA--RKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
           K   +D  +      ++    + +E +  +   E+H    ++    +  + +A +  Y +
Sbjct: 295 KMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTR 354

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG +  + RVFD M  K V +W +++ GY +N +P +AL+L+  M +  + P++ T    
Sbjct: 355 CGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSL 414

Query: 357 LSACGHAGLVDKGREI 372
           L AC     +  G EI
Sbjct: 415 LLACSRMKSLHYGEEI 430



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 161/326 (49%), Gaps = 20/326 (6%)

Query: 25  PNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISI 84
           P +     LQ  DS  +P   T + S L       +  YG +IH    + G+  +  I I
Sbjct: 389 PRKALDLYLQMTDSGLDPDWFT-IGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGI 447

Query: 85  KLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERP 144
            LL L++ CG    A  +FD +  R+L ++N MIAGY +NG  +E+++L R+++S G +P
Sbjct: 448 SLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQP 507

Query: 145 DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSY 204
             Y  +++     C  S +   R LG+ +H   LK  +  D  + ++++D Y KGG    
Sbjct: 508 --YEIAIMCVCGAC--SQLSALR-LGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGL 562

Query: 205 ARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIET 264
           ++ +FD + EK+V     +I+G+   G  ++A E+F K +   +   +    G  ++   
Sbjct: 563 SQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSH 622

Query: 265 A---RKALEVHCQLIKNVFFEDVKLG--SALVDMYAKCGKIDDARRVFDHM-QQKNVFTW 318
           A      LE   Q++ N+   + KL   + +VDM  + G+IDDA R+ + M    +   W
Sbjct: 623 AGLVEDGLEYFNQML-NLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIW 681

Query: 319 TSMIDGYGKNGN-------PNQALEL 337
           +S++     +GN        N+ LEL
Sbjct: 682 SSLLSSCRIHGNLGLGEKVANKLLEL 707



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 68/282 (24%), Positives = 133/282 (47%), Gaps = 13/282 (4%)

Query: 160 RSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVIC 219
           R ++ + R L  MV A    C+   D VL T ++  Y   G  S +R+VFD +  KN+  
Sbjct: 11  RKDIEVGRRLHEMVSASTQFCN---DFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQ 67

Query: 220 STSMISGFMSQGFVEDAEEIFRKTV-----EKDIVVYNAMIEGYSISIETARKALEVHCQ 274
             +++S +      EDA  IF + +     + D      +I+  +  ++     + +H  
Sbjct: 68  WNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQI-IHGM 126

Query: 275 LIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQA 334
             K     DV +G+AL+ MY KCG +++A +VF+HM ++N+ +W S+I G+ +NG   ++
Sbjct: 127 ATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQES 186

Query: 335 LELF--CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACM 392
              F   ++ E    P+  T +  L  C     ++KG  +   +     +  ++     +
Sbjct: 187 FNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAV-HGLAVKLGLNEELMVNNSL 245

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDV 434
           +D+  +   L +A + + +  +K N   W +++      +DV
Sbjct: 246 IDMYSKCRFLSEA-QLLFDKNDKKNIVSWNSMIGGYAREEDV 286


>gi|224079057|ref|XP_002305733.1| predicted protein [Populus trichocarpa]
 gi|222848697|gb|EEE86244.1| predicted protein [Populus trichocarpa]
          Length = 571

 Score =  289 bits (739), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 166/450 (36%), Positives = 249/450 (55%), Gaps = 8/450 (1%)

Query: 50  SALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQR 109
           S LQ   N      G  +H    K  V   T     LL ++ KCG L  A  +FD +  R
Sbjct: 3   SILQACANCGDVSLGRAVHGSGVKACVHWKTTFCNTLLDMYAKCGVLDGAILVFDLMSVR 62

Query: 110 TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL 169
           T+  +  +IA Y + G  +E++ L  ++   G  PD +T + +L A  C   N  L    
Sbjct: 63  TVVTWTSLIAAYAREGLSDEAIRLFHEMDREGVSPDIFTITTVLHACAC---NGSLEN-- 117

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           G+ VH  I + D++++  +  AL+D Y K G    A  VF  M  K++I   +MI G+  
Sbjct: 118 GKDVHNYIRENDMQSNIFVCNALMDMYAKCGSMEDANSVFLEMPVKDIISWNTMIGGYSK 177

Query: 230 QGFVEDAEEIFRKTV--EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG 287
                +A  +F   V   K      A I     S+ +  +  EVH  +++N FF D ++ 
Sbjct: 178 NSLPNEALSLFGDMVLEMKPDGTTLACILPACASLASLDRGKEVHGHILRNGFFSDQQVA 237

Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347
           +ALVDMY KCG    AR +FD +  K++ TWT MI GYG +G  N A+  F  M++  ++
Sbjct: 238 NALVDMYVKCGVPVLARLLFDMIPTKDLITWTVMIAGYGMHGFGNNAITTFNEMRQAGIE 297

Query: 348 PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALK 407
           P+ V+F+  L AC H+GL+D+G   F  M+ + ++KPK+EHYAC+VDLL R+G L  A K
Sbjct: 298 PDEVSFISILYACSHSGLLDEGWRFFNVMQDECNVKPKLEHYACIVDLLARSGKLAMAYK 357

Query: 408 FVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG 467
           F+  MP +P++ +W ALLS CR+H DV++A   A  +F+L   +  G YV L+NT A A 
Sbjct: 358 FIKSMPIEPDATIWGALLSGCRIHHDVKLAEKVAEHVFELEP-ENTGYYVLLANTYAEAE 416

Query: 468 KWDSVTELREKMKLRGVLKDTGCSWVGTES 497
           KW+ V +LR+K+  RG+ K+ GCSW+  +S
Sbjct: 417 KWEEVKKLRQKIGRRGLKKNPGCSWIEVKS 446


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 164/498 (32%), Positives = 276/498 (55%), Gaps = 40/498 (8%)

Query: 33  LQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLK 92
           LQ    +  P +A+   + +Q  I S     G K+H HI  +G  P   I  +LL ++ K
Sbjct: 59  LQILHQIDKP-SASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAK 117

Query: 93  CGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL----------VSSG- 141
           C +L  + ++FDE+P+R L ++N +I+GY K G ++E+ SL  K+          + SG 
Sbjct: 118 CDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGY 177

Query: 142 ---ERP-DGYTFSMILKASTCCRSN-------------VPLPRNLGRMVHAQILKCDVKA 184
              +RP +      ++K S   +SN             VP  R +G+ +H  I++  + +
Sbjct: 178 VRHDRPNEALELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLR-IGKEIHGYIMRTGLDS 236

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF---- 240
           D+V+++AL D Y K G    AR +FD M++++++  T+MI  +   G  ++  ++F    
Sbjct: 237 DEVVWSALSDMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLL 296

Query: 241 RKTVEKDIVVYNAMIEGYS--ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
           R  +  +   ++ ++   +   S E  +K   VH  + +  F       SALV MY+KCG
Sbjct: 297 RSGIRPNEFTFSGVLNACANQTSEELGKK---VHGYMTRVGFDPFSFAASALVHMYSKCG 353

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            +  A RVF    Q ++F+WTS+I GY +NG P++A+  F ++ +   QP+++TF+G LS
Sbjct: 354 NMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLS 413

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC HAGLVDKG + F S++  Y +    +HYAC++DLL R+G  ++A   + +M  KP+ 
Sbjct: 414 ACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDK 473

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            +WA+LL  CR+H ++++A  AA  +F++   + P  YV L+N  A AG W  V ++R+ 
Sbjct: 474 FLWASLLGGCRIHGNLKLAQRAAEALFEIEPEN-PATYVTLANIYATAGMWSEVAKIRKT 532

Query: 479 MKLRGVLKDTGCSWVGTE 496
           M  RGV+K  G SW+  +
Sbjct: 533 MDDRGVVKKPGLSWIAIK 550


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  288 bits (738), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 156/459 (33%), Positives = 270/459 (58%), Gaps = 15/459 (3%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKC---GALKYAGQMF 103
           +L   +    N +    G ++H+   + G+  +  +   L+ ++ KC   G++  A ++F
Sbjct: 273 TLSGVISACANMELLLLGQQLHSQAIRHGLTLDRCVGCCLINMYAKCSVDGSMCAARKIF 332

Query: 104 DELPQRTLSAYNYMIAGYL-KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           D++    + ++  MI GY+ K G  EE+L L R ++ +   P+ +TFS  LKA     +N
Sbjct: 333 DQILDHNVFSWTAMITGYVQKGGYDEEALDLFRGMILTHVIPNHFTFSSTLKAC----AN 388

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
           +   R +G  V    +K    + + +  +L+  Y + G+   AR  FD++ EKN+I   +
Sbjct: 389 LAALR-IGEQVFTHAVKLGFSSVNCVANSLISMYARSGRIDDARKAFDILFEKNLISYNT 447

Query: 223 MISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKN 278
           +I  +      E+A E+F +  ++ +      + +++ G + SI T  K  ++H ++IK+
Sbjct: 448 VIDAYAKNLNSEEALELFNEIEDQGMGASAFTFASLLSG-AASIGTIGKGEQIHARVIKS 506

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
               +  + +AL+ MY++CG I+ A +VF+ M+ +NV +WTS+I G+ K+G   QALELF
Sbjct: 507 GLKLNQSVCNALISMYSRCGNIESAFQVFEDMEDRNVISWTSIITGFAKHGFATQALELF 566

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398
             M E  V+PN VT++  LSAC H GLV++G + F+SM  ++ + P+MEHYAC+VD+LGR
Sbjct: 567 HKMLEEGVRPNEVTYIAVLSACSHVGLVNEGWKHFKSMYTEHGVIPRMEHYACIVDILGR 626

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVA 458
           +GSL +A++F+  MP K ++ VW   L +CR+H ++E+   AA  I +   +D P AY+ 
Sbjct: 627 SGSLSEAIQFINSMPYKADALVWRTFLGACRVHGNLELGKHAAKMIIEQEPHD-PAAYIL 685

Query: 459 LSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTES 497
           LSN  A+  KWD V+ +R+ MK + ++K+ GCSWV  E+
Sbjct: 686 LSNLYASISKWDEVSNIRKAMKEKXLIKEAGCSWVEVEN 724



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 192/384 (50%), Gaps = 30/384 (7%)

Query: 64  GLKIHAHITKTG-VKPNTNISIKLLILHLKC-GALKYAGQMFDELPQRTLSAYNYMIAGY 121
           G  I   + KTG ++ +  +   L+ + +K  G L  A ++F+++P+R    +  MI   
Sbjct: 187 GDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMITRL 246

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           ++ G   E++ L   ++ SG  PD +T S ++ A  C    + L   LG+ +H+Q ++  
Sbjct: 247 MQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISA--CANMELLL---LGQQLHSQAIRHG 301

Query: 182 VKADDVLYTALVDSYVK---GGKTSYARIVFDMMLEKNVICSTSMISGFMSQ-GFVEDAE 237
           +  D  +   L++ Y K    G    AR +FD +L+ NV   T+MI+G++ + G+ E+A 
Sbjct: 302 LTLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDEEAL 361

Query: 238 EIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG--------SA 289
           ++FR  +    V+ N      ++       AL +  Q    VF   VKLG        ++
Sbjct: 362 DLFRGMILTH-VIPNHFTFSSTLKACANLAALRIGEQ----VFTHAVKLGFSSVNCVANS 416

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349
           L+ MYA+ G+IDDAR+ FD + +KN+ ++ ++ID Y KN N  +ALELF  +++  +  +
Sbjct: 417 LISMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGAS 476

Query: 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC--MVDLLGRAGSLEQALK 407
             TF   LS     G + KG +I     R      K+    C  ++ +  R G++E A +
Sbjct: 477 AFTFASLLSGAASIGTIGKGEQIH---ARVIKSGLKLNQSVCNALISMYSRCGNIESAFQ 533

Query: 408 FVLEMPEKPNSDVWAALLSSCRLH 431
            V E  E  N   W ++++    H
Sbjct: 534 -VFEDMEDRNVISWTSIITGFAKH 556



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 126/257 (49%), Gaps = 11/257 (4%)

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           + NG++ +++S +  +V  G  PD  T+S+ LK   C R+      ++G +VH ++ + D
Sbjct: 42  INNGRLHKAISTLEHMVHQGSHPDLQTYSLFLK--KCIRTR---SFDIGTLVHEKLTQSD 96

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMM-LEKNVICSTSMISGFMSQGFVEDAEEIF 240
           ++ D V   +L+  Y K G+   A  +F +M   +++I  ++M+S F +      A   F
Sbjct: 97  LQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNNMGFRALLTF 156

Query: 241 RKTVEKDIVVYNAMIEGYSISIETARKAL---EVHCQLIKNVFFE-DVKLGSALVDMYAK 296
              +E             + +  TA        +   +IK  + + DV +G  L+DM+ K
Sbjct: 157 VDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVK 216

Query: 297 C-GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
             G +  A +VF+ M ++N  TWT MI    + G   +A++LF  M     +P+  T  G
Sbjct: 217 GRGDLVSAFKVFEKMPERNAVTWTLMITRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSG 276

Query: 356 ALSACGHAGLVDKGREI 372
            +SAC +  L+  G+++
Sbjct: 277 VISACANMELLLLGQQL 293



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 3/158 (1%)

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM-QQKNVFTWTSMIDGYGKNG 329
           VH +L ++    D    ++L+ +Y+KCG+ + A  +F  M   +++ +W++M+  +  N 
Sbjct: 88  VHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSIFRLMGSSRDLISWSAMVSCFANNN 147

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
              +AL  F  M E    PN   F  A  AC  A  V  G  IF  + +   ++  +   
Sbjct: 148 MGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEFVSVGDSIFGFVIKTGYLQSDVCVG 207

Query: 390 ACMVDLLGRA-GSLEQALKFVLEMPEKPNSDVWAALLS 426
             ++D+  +  G L  A K   +MPE+ N+  W  +++
Sbjct: 208 CGLIDMFVKGRGDLVSAFKVFEKMPER-NAVTWTLMIT 244


>gi|356498743|ref|XP_003518209.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 573

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 154/439 (35%), Positives = 249/439 (56%), Gaps = 10/439 (2%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           F+  ++HAH+   G   +  I+ KLL  + +  A+  A  +FD L  R    ++ M+ G+
Sbjct: 17  FHIRQVHAHVVANGTLQDLVIANKLLYTYAQHKAIDDAYSLFDGLTMRDSKTWSVMVGGF 76

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            K G      +  R+L+  G  PD YT   +++    CR    L   +GR++H  +LK  
Sbjct: 77  AKAGDHAGCYATFRELLRCGVTPDNYTLPFVIRT---CRDRTDL--QIGRVIHDVVLKHG 131

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           + +D  +  +LVD Y K      A+ +F+ ML K+++  T MI  +      E +  +F 
Sbjct: 132 LLSDHFVCASLVDMYAKCIVVEDAQRLFERMLSKDLVTWTVMIGAYADCNAYE-SLVLFD 190

Query: 242 KTVEKDIV---VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
           +  E+ +V   V    +      +    +A   +  +++N F  DV LG+A++DMYAKCG
Sbjct: 191 RMREEGVVPDKVAMVTVVNACAKLGAMHRARFANDYIVRNGFSLDVILGTAMIDMYAKCG 250

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            ++ AR VFD M++KNV +W++MI  YG +G    A++LF MM  C + PN VTF+  L 
Sbjct: 251 SVESAREVFDRMKEKNVISWSAMIAAYGYHGRGKDAIDLFHMMLSCAILPNRVTFVSLLY 310

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC HAGL+++G   F SM  +++++P ++HY CMVDLLGRAG L++AL+ +  M  + + 
Sbjct: 311 ACSHAGLIEEGLRFFNSMWEEHAVRPDVKHYTCMVDLLGRAGRLDEALRLIEAMTVEKDE 370

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            +W+ALL +CR+H  +E+A  AAN + +L   + PG YV LSN  A AGKW+ V + R+ 
Sbjct: 371 RLWSALLGACRIHSKMELAEKAANSLLELQPQN-PGHYVLLSNIYAKAGKWEKVAKFRDM 429

Query: 479 MKLRGVLKDTGCSWVGTES 497
           M  R + K  G +W+  ++
Sbjct: 430 MTQRKLKKIPGWTWIEVDN 448


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  288 bits (738), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 156/434 (35%), Positives = 258/434 (59%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H +I +  V  +  +   L+ ++ KC  ++ A  ++D      +   + +I+GY+ 
Sbjct: 362 GKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVL 421

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  E++L + R L+    +P+  T + +L A   C S   LP  LG+ +H  +L+   +
Sbjct: 422 NGMSEKALQMFRYLLEQCIKPNAVTVASVLPA---CASISALP--LGQEIHGYVLRNAYE 476

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               + +AL+D Y K G+   +  +F  M  K+ +   SMIS F   G  ++A ++FR+ 
Sbjct: 477 GKCYVESALMDMYAKCGRLDLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQM 536

Query: 244 VEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
             + I  YN +    ++S   +  A+    E+H  +IK     D+   SAL+DMYAKCG 
Sbjct: 537 CMEGIK-YNNVTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGN 595

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ++ A RVF+ M  KN  +W S+I  YG +G   +++     MQE   +P++VTFL  +SA
Sbjct: 596 MELALRVFEFMPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISA 655

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C HAGLV++G ++F+ M ++Y + P+MEH+ACMVDL  R+G L++A++F+ +MP KP++ 
Sbjct: 656 CAHAGLVEEGLQLFQCMTKEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAG 715

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +W ALL +CR+H +VE+A+IA+ E+FKL+  +  G YV +SN  A AG+WD V+++R  M
Sbjct: 716 IWGALLHACRVHRNVELADIASQELFKLDPGNS-GYYVLMSNINAVAGRWDGVSKVRRLM 774

Query: 480 KLRGVLKDTGCSWV 493
           K   +LK  G SWV
Sbjct: 775 KDNKILKIPGYSWV 788



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 191/404 (47%), Gaps = 15/404 (3%)

Query: 29  FPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLI 88
           F  K+  + +  +P  A +LP  ++          G  +H     TG+  +  +   L+ 
Sbjct: 126 FYVKMWTHPAAPSP-DAHTLPYVVKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIK 184

Query: 89  LHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYT 148
           ++   G L+ A   FD +P R    +N M+ GY+K G V  ++ L R +  SG  P+  T
Sbjct: 185 MYSDAGLLRDARDAFDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFAT 244

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIV 208
            +  L   + C +   L    G  +H+  +KC ++ +  +   L+  Y K      A  +
Sbjct: 245 LACFL---SVCAAEADLLS--GVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRL 299

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIET 264
           F+++   +++    MISG +  G +++A  +F    R     D V   +++   +  +  
Sbjct: 300 FELLPRDDLVTWNGMISGCVQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALT-DLNG 358

Query: 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
            ++  EVH  +I+N    D  L SALVD+Y KC  +  AR ++D  +  +V   +++I G
Sbjct: 359 LKQGKEVHGYIIRNCVHMDAFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISG 418

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD-YSMK 383
           Y  NG   +AL++F  + E C++PN VT    L AC     +  G+EI   + R+ Y  K
Sbjct: 419 YVLNGMSEKALQMFRYLLEQCIKPNAVTVASVLPACASISALPLGQEIHGYVLRNAYEGK 478

Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
             +E  + ++D+  + G L+ +     +M  K +   W +++SS
Sbjct: 479 CYVE--SALMDMYAKCGRLDLSHYIFSKMSLK-DEVTWNSMISS 519



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 61/110 (55%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
            ++ SAL    +    +YG +IH  I K  +K +      L+ ++ KCG ++ A ++F+ 
Sbjct: 546 VTISSALSACASLPAIYYGKEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEF 605

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           +P +   ++N +I+ Y  +G V+ES+S + ++   G +PD  TF  ++ A
Sbjct: 606 MPDKNEVSWNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISA 655


>gi|449501934|ref|XP_004161498.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 638

 Score =  288 bits (736), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 160/468 (34%), Positives = 267/468 (57%), Gaps = 25/468 (5%)

Query: 32  KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHL 91
           K + YDS+ N   +       Q  I       G ++H H+ KT   P+  +  +L++L+ 
Sbjct: 61  KFEGYDSILNECVS-------QRAIRE-----GQRVHTHMIKTCYLPSVYLRTRLIVLYN 108

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           KC  L  A  MFDE+PQR + ++  MI+ Y + G   E+L+L  +++ S   P+ +TF+ 
Sbjct: 109 KCDCLGDARGMFDEMPQRNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFAT 168

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           IL   T C  ++      GR +H+  +K + ++   + ++L+D Y K G+   A  VF  
Sbjct: 169 IL---TSCYGSLGF--ETGRQIHSIAIKRNYESHMFVGSSLLDMYAKSGRICDAHGVFHC 223

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARK 267
           + E++V+  T++ISG+   G  E+A ++FR+     +  + V Y +++   S  +     
Sbjct: 224 LPERDVVACTAIISGYAQMGLDEEALKLFRQLQIEGMNSNSVTYASVLTALS-GLAALNH 282

Query: 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
             +VH  ++++  +  V L ++L+DMY+KCG +  ARR+FD M ++   +W +M+ GY K
Sbjct: 283 GKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGNVCYARRIFDSMPERTCISWNAMLVGYSK 342

Query: 328 NGNPNQALELFCMM-QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY-SMKPK 385
           +G   + LELF +M +E  V+P+ +T+L  LS C H  L D G EIF +M      ++P 
Sbjct: 343 HGMAREVLELFKLMREENKVKPDSITYLAVLSGCSHGQLEDMGLEIFYNMVNGKDGIEPD 402

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIF 445
           + HY C+VDLLGRAG +E+A  F+ +MP  P + +W +LL SCR+H DVE+  I   ++ 
Sbjct: 403 IGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPTAAIWGSLLGSCRVHSDVEIGIIVGQKLL 462

Query: 446 KLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           +L   +  G YV LSN  A+AGKW+ +  +R+ M+ + V K+ G SWV
Sbjct: 463 ELEPEN-AGNYVILSNLYASAGKWEDMRNIRDLMQEKAVTKEPGRSWV 509


>gi|224061617|ref|XP_002300569.1| predicted protein [Populus trichocarpa]
 gi|222847827|gb|EEE85374.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  288 bits (736), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 147/433 (33%), Positives = 258/433 (59%), Gaps = 13/433 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G KIH  + K G + +  ++  L+ ++ + G +  A ++FD++P R   ++N MI+GY +
Sbjct: 13  GKKIHCLVLKLGFEWDVFVAASLVHMYSRFGLVGDARKLFDDMPARDRGSWNAMISGYCQ 72

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG   E+L +  ++   G + D  T + +L    C +    L    G+++H  ++K  ++
Sbjct: 73  NGNAAEALDIADEMRLEGVKMDAITVASVL--PVCAQVGDILS---GKLIHLYVIKHGLE 127

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +  +  AL++ Y K G   +A+ VF +++ K+V+   ++I+G+   G   +A E++   
Sbjct: 128 FELFVSNALINMYAKFGSLGHAQKVFGLLI-KDVVSWNTLITGYAQNGLASEAIEVYLLM 186

Query: 244 VEKDIVVYN-----AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
            E + ++ N     +++  YS  +   ++ + +H Q+IKN  + DV +G+ L+DMY KCG
Sbjct: 187 EEHEEIIPNQGTWVSILPAYS-HVGALQQGMRIHGQVIKNCLYSDVFVGTCLIDMYGKCG 245

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           K+DDA  +F  + +KN   W +MI  YG +G+  +ALELF  M+   V+P+++TF+  LS
Sbjct: 246 KLDDAISLFYQVPRKNSVPWNAMISCYGVHGDGEKALELFREMKAERVKPDHITFVSLLS 305

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC H+GLV   +  F  ME +Y +KP ++HY CMVDL GRAG LE A  F+ +MP +P++
Sbjct: 306 ACSHSGLVSDAQWCFNMMEEEYGIKPSLKHYGCMVDLFGRAGELEMAFNFIKKMPIQPDA 365

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
             W ALL++CR+H ++E+   A+  +F++++ +  G YV LSN  A  GKW+ V ++R  
Sbjct: 366 SAWGALLNACRIHGNIELGKHASERLFEVDS-ENVGYYVLLSNIYANVGKWEGVDDVRSL 424

Query: 479 MKLRGVLKDTGCS 491
            + RG+ K+ G S
Sbjct: 425 ARDRGLRKNPGWS 437


>gi|225431511|ref|XP_002274999.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
 gi|296088567|emb|CBI37558.3| unnamed protein product [Vitis vinifera]
          Length = 492

 Score =  287 bits (735), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 157/456 (34%), Positives = 254/456 (55%), Gaps = 12/456 (2%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           +TA+SL   L+  +         + HA I   G  PN  +   LL+++ KCG L+ A ++
Sbjct: 4   ITASSLSCILRKCVPHSAISQAKQTHAQILVHGFIPNITLQTDLLLVYSKCGVLQDARKV 63

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           FD++ +R + ++N +IA Y  N    ++L +    +  G RPD +T   + KA      +
Sbjct: 64  FDKMVERNMHSWNILIASYAHNCFFYDALGVFDSFLKMGFRPDHFTLPPVFKACAGIGDS 123

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
                 LG+M+H+ +++   +   V+ ++++D Y K G    A   F  M  ++ +    
Sbjct: 124 Y-----LGKMLHSWVIRIGFEEYVVVGSSVLDFYAKCGGLVDAWRCFVNMSWRDSVVWNL 178

Query: 223 MISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETAR----KALEVHCQLIKN 278
           MI G     F  DA E FR  + + + + +  +    +S+        K  E+H Q++KN
Sbjct: 179 MIVGLGKACFFRDALECFRDMLSEGVKMDSRTVPSI-LSVCGGEGDLMKGKEIHGQVVKN 237

Query: 279 -VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
            +F  +V +G++L+DMYAKCG + D+ +VF  M + N+ TWTSMI  YG +G  ++AL L
Sbjct: 238 QIFGCEVAIGNSLIDMYAKCGCLHDSEKVFTTMSELNLVTWTSMISCYGVHGKGHEALAL 297

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
           F  M+ C  QPN VT    L++C H+GL+++GR+IF S+  DY  +P  EHYACMVDLLG
Sbjct: 298 FKKMKYCGFQPNCVTITAILASCSHSGLIEQGRKIFYSINLDYGFEPSAEHYACMVDLLG 357

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457
           R G LE+A + +  M     + VW ALL+ C +H ++E+  IAA+ +F+L   +    Y+
Sbjct: 358 RFGYLEEAFELIKNMKSAATASVWGALLAGCLMHKNIEIGEIAAHCLFELEPRNSSN-YI 416

Query: 458 ALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           AL +   + G WD V+  R KM+  G++K  GCSW+
Sbjct: 417 ALCSMYDSLGIWDGVSRTRAKMRELGLVKTPGCSWI 452


>gi|449437930|ref|XP_004136743.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Cucumis sativus]
          Length = 666

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 152/436 (34%), Positives = 258/436 (59%), Gaps = 13/436 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H H+ KT   P+  +  +L++L+ KC  L  A +MFDE+PQ+ + ++  MI+ Y +
Sbjct: 109 GQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFDEMPQKNVVSWTAMISAYSQ 168

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G   E+L+L  +++ S   P+ +TF+ IL   T C  ++      GR +H+  +K + +
Sbjct: 169 RGFAFEALNLFVEMLRSDTEPNHFTFATIL---TSCYGSLGF--ETGRQIHSIAIKRNYE 223

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +   + ++L+D Y K G+   A  VF  + E++V+  T++ISG+   G  E+A ++FR+ 
Sbjct: 224 SHMFVGSSLLDMYAKSGRICDAHGVFHCLPERDVVACTAIISGYAQMGLDEEALKLFRQL 283

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               +  + V Y +++   S  +       +VH  ++++  +  V L ++L+DMY+KCG 
Sbjct: 284 QIEGMNSNSVTYASVLTALS-GLAALNHGKQVHSHVLRSGQYSYVVLLNSLIDMYSKCGN 342

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM-QECCVQPNYVTFLGALS 358
           +  ARR+FD M ++   +W +M+ GY K+G   + LELF +M +E  V+P+ +T+L  LS
Sbjct: 343 VCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVLS 402

Query: 359 ACGHAGLVDKGREIFESMERDY-SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            C H  L D G EIF +M      ++P + HY C+VDLLGRAG +E+A  F+ +MP  P 
Sbjct: 403 GCSHGQLEDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEAFDFIKKMPFVPT 462

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
           + +W +LL SCR+H DVE+  I   ++ +L   +  G YV LSN  A+AGKW+ +  +R+
Sbjct: 463 AAIWGSLLGSCRVHSDVEIGIIVGQKLLELEPEN-AGNYVILSNLYASAGKWEDMRNIRD 521

Query: 478 KMKLRGVLKDTGCSWV 493
            M+ + V K+ G SWV
Sbjct: 522 LMQEKAVTKEPGRSWV 537



 Score = 88.6 bits (218), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 53/168 (31%), Positives = 87/168 (51%), Gaps = 9/168 (5%)

Query: 255 IEGYS------ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFD 308
            EGY       +S    R+   VH  +IK  +   V L + L+ +Y KC  + DAR +FD
Sbjct: 90  FEGYDTILNECVSQRAIREGQRVHTHMIKTCYLPSVYLRTRLIVLYNKCDCLGDAREMFD 149

Query: 309 HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDK 368
            M QKNV +WT+MI  Y + G   +AL LF  M     +PN+ TF   L++C  +   + 
Sbjct: 150 EMPQKNVVSWTAMISAYSQRGFAFEALNLFVEMLRSDTEPNHFTFATILTSCYGSLGFET 209

Query: 369 GREIFE-SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
           GR+I   +++R+Y  +  M   + ++D+  ++G +  A      +PE+
Sbjct: 210 GRQIHSIAIKRNY--ESHMFVGSSLLDMYAKSGRICDAHGVFHCLPER 255



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 72/284 (25%), Positives = 126/284 (44%), Gaps = 49/284 (17%)

Query: 35  NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           N  + ++ LTA S  +AL H         G ++H+H+ ++G      +   L+ ++ KCG
Sbjct: 291 NSVTYASVLTALSGLAALNH---------GKQVHSHVLRSGQYSYVVLLNSLIDMYSKCG 341

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE-RPDGYTFSMIL 153
            + YA ++FD +P+RT  ++N M+ GY K+G   E L L + +    + +PD  T+  +L
Sbjct: 342 NVCYARRIFDSMPERTCISWNAMLVGYSKHGMAREVLELFKLMREENKVKPDSITYLAVL 401

Query: 154 KASTCCRSNVPLPRNLGRMVHAQIL--KCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
             S C    +    ++G  +   ++  K  ++ D   Y  +VD   + G+   A   FD 
Sbjct: 402 --SGCSHGQL---EDMGLEIFYNMVNGKDGIEPDIGHYGCVVDLLGRAGRVEEA---FD- 452

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV 271
            ++K     T+ I G +          +    V  D+           I I   +K LE+
Sbjct: 453 FIKKMPFVPTAAIWGSL----------LGSCRVHSDV----------EIGIIVGQKLLEL 492

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
             +   N           L ++YA  GK +D R + D MQ+K V
Sbjct: 493 EPENAGNYVI--------LSNLYASAGKWEDMRNIRDLMQEKAV 528


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 165/452 (36%), Positives = 258/452 (57%), Gaps = 12/452 (2%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           ++P  L+    S     G ++H    K G+  +  +S  L+ ++  C  ++ A ++FD  
Sbjct: 127 TIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTS 186

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           PQR L ++  MI GY+K G   E + L  ++     + DG T  ++L  S+C R      
Sbjct: 187 PQRDLVSWTTMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVL--SSCARLG---D 241

Query: 167 RNLGRMVHAQILK-CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
             LGR +H  I++  +V  D  +  ALVD Y+K G  ++AR VF  M  KNV+   SMIS
Sbjct: 242 LRLGRKLHRYIIRNSNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMIS 301

Query: 226 GFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFF 281
           G   +G  +++  +FRK     V+ D V   A++   + ++        VH  L +N   
Sbjct: 302 GLAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCA-NLGVLELGKWVHAYLDRNQIR 360

Query: 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM 341
            D  +G+ALVDMYAKCG ID A  VF  M +K+V+++T+MI G   +G   +AL+LF  M
Sbjct: 361 ADGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEM 420

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGS 401
            +  ++P+ VTF+G L+AC H GLV++GR+ FE M   Y+++P++EHY CMVDLLGRAG 
Sbjct: 421 PKMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGL 480

Query: 402 LEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSN 461
           + +A +F+  MP +P++ V  ALL +C++H  VE+      +I K+    + GAYV +SN
Sbjct: 481 INEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPR-KDGAYVLMSN 539

Query: 462 TLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             ++A +W    +LR+ MK R + K  GCS +
Sbjct: 540 IYSSANRWRDALKLRKTMKERNLEKTPGCSSI 571



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 123/446 (27%), Positives = 208/446 (46%), Gaps = 31/446 (6%)

Query: 64  GLK-IHAHITKTGVKPNTNISIKLLILHLKCGAL----KYAGQMFDELPQRTLSAYNYMI 118
           GLK IHA I KT   P+  ++I   +  L   +L    +YA  +  +L    L  YN +I
Sbjct: 37  GLKQIHASIIKTMPSPDAQLTISTRLSALCAQSLPIDPRYALSLLAQLRTPNLPLYNAII 96

Query: 119 AGY-LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQI 177
            G    N    E L + ++++S G  PD YT   +LKA  C  S        G  VH Q 
Sbjct: 97  RGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKA--CAESRAVRE---GEEVHGQA 151

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
           +K  + +D  +   L+  Y        AR VFD   +++++  T+MI G++  GF  +  
Sbjct: 152 IKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTMIQGYVKMGFAREGV 211

Query: 238 EIFRKTVEKDIVVYNAMIEGYSISIETA--------RKALEVHCQLIKNVFFE-DVKLGS 288
            +F +   +     N   +G ++ I  +        R   ++H  +I+N     DV +G+
Sbjct: 212 GLFFEMCGE-----NLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSNVNLDVFVGN 266

Query: 289 ALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348
           ALVDMY KCG  + AR+VF  M  KNV +W SMI G  + G   ++L +F  MQ   V+P
Sbjct: 267 ALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFRKMQRLGVKP 326

Query: 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKF 408
           + VT +  L++C + G+++ G+ +   ++R+          A +VD+  + GS++QA  +
Sbjct: 327 DDVTLVAVLNSCANLGVLELGKWVHAYLDRNQIRADGFIGNA-LVDMYAKCGSIDQAC-W 384

Query: 409 VLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGK 468
           V +   + +   + A++    +H     A    +E+ K+        +V +    +  G 
Sbjct: 385 VFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVLTACSHVGL 444

Query: 469 WDSVTELREKM----KLRGVLKDTGC 490
            +   +  E M     LR  L+  GC
Sbjct: 445 VEEGRKYFEDMSTIYNLRPQLEHYGC 470


>gi|326517994|dbj|BAK07249.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 304

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 132/211 (62%), Positives = 169/211 (80%), Gaps = 2/211 (0%)

Query: 289 ALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM--QECCV 346
           AL+DMY+KCG+++D RRVFD M ++NV TWTSMIDGYGKNG  ++AL L   M  Q+  +
Sbjct: 89  ALLDMYSKCGRVEDGRRVFDGMAERNVVTWTSMIDGYGKNGLSDEALLLLEEMRGQQRGI 148

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
           +PN+ TFL ALSAC  AGL+ +G+E+F+SMERD S+KP+MEHYACMVDLLGR GS+ QA 
Sbjct: 149 RPNHATFLSALSACARAGLLSRGQELFQSMERDCSLKPRMEHYACMVDLLGRFGSVRQAY 208

Query: 407 KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
            FV  +P +PNSDVWAALL +  LH DV++AN+A+ E+F+L+   RPGAY+A SNTLAAA
Sbjct: 209 DFVRGIPARPNSDVWAALLGAATLHGDVDIANVASREVFELSRAGRPGAYMAFSNTLAAA 268

Query: 467 GKWDSVTELREKMKLRGVLKDTGCSWVGTES 497
           GKWD V ++RE MK RGVLKD  CSWVG+++
Sbjct: 269 GKWDGVHQVREMMKQRGVLKDAACSWVGSDN 299



 Score = 46.6 bits (109), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 85/199 (42%), Gaps = 20/199 (10%)

Query: 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV 250
           AL+D Y K G+    R VFD M E+NV+  TSMI G+   G  ++A  +  +   +   +
Sbjct: 89  ALLDMYSKCGRVEDGRRVFDGMAERNVVTWTSMIDGYGKNGLSDEALLLLEEMRGQQRGI 148

Query: 251 YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG------SALVDMYAKCGKIDDAR 304
                   S     AR  L    Q +      D  L       + +VD+  + G +   R
Sbjct: 149 RPNHATFLSALSACARAGLLSRGQELFQSMERDCSLKPRMEHYACMVDLLGRFGSV---R 205

Query: 305 RVFDHMQ----QKNVFTWTSMIDGYGKNGNPNQA----LELFCMMQECCVQPN-YVTFLG 355
           + +D ++    + N   W +++     +G+ + A     E+F + +    +P  Y+ F  
Sbjct: 206 QAYDFVRGIPARPNSDVWAALLGAATLHGDVDIANVASREVFELSR--AGRPGAYMAFSN 263

Query: 356 ALSACGHAGLVDKGREIFE 374
            L+A G    V + RE+ +
Sbjct: 264 TLAAAGKWDGVHQVREMMK 282



 Score = 45.8 bits (107), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 7/190 (3%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSS--GER 143
           LL ++ KCG ++   ++FD + +R +  +  MI GY KNG  +E+L L+ ++     G R
Sbjct: 90  LLDMYSKCGRVEDGRRVFDGMAERNVVTWTSMIDGYGKNGLSDEALLLLEEMRGQQRGIR 149

Query: 144 PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTS 203
           P+  TF   L  S C R+ + L R    +  +    C +K     Y  +VD   + G   
Sbjct: 150 PNHATFLSAL--SACARAGL-LSRGQ-ELFQSMERDCSLKPRMEHYACMVDLLGRFGSVR 205

Query: 204 YA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISI 262
            A   V  +    N     +++      G V+ A    R+  E            +S ++
Sbjct: 206 QAYDFVRGIPARPNSDVWAALLGAATLHGDVDIANVASREVFELSRAGRPGAYMAFSNTL 265

Query: 263 ETARKALEVH 272
             A K   VH
Sbjct: 266 AAAGKWDGVH 275


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 157/451 (34%), Positives = 250/451 (55%), Gaps = 11/451 (2%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           + PS L+   +      G +IH  + KTG + N  +   L+ ++ K G L  A  +   L
Sbjct: 417 TYPSILRTCTSVGALDLGEQIHTQVIKTGFQFNVYVCSVLIDMYAKHGKLDTAHVILRTL 476

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
            +  + ++  +I+GY ++    E+L   +++++ G + D   FS  + A    ++     
Sbjct: 477 TEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSAISACAGIQA----- 531

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
            N GR +HAQ        D  +  ALV  Y + G+   A + F+ +  K+ I    +ISG
Sbjct: 532 LNQGRQIHAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKIDAKDSISWNGLISG 591

Query: 227 FMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
           F   G+ EDA ++F    R  +E     + + +   + +I   ++  ++H  +IK  F  
Sbjct: 592 FAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVSA-AANIANIKQGKQIHAMIIKRGFDS 650

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           D+++ +AL+  YAKCG I+DARR F  M +KN  +W +MI GY ++G  N+A+ LF  M+
Sbjct: 651 DIEVSNALITFYAKCGSIEDARREFCEMPEKNDVSWNAMITGYSQHGYGNEAVNLFEKMK 710

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
           +    PN+VTF+G LSAC H GLV KG   FESM +++ + PK  HYAC+VDL+ RAG L
Sbjct: 711 QVGEMPNHVTFVGVLSACSHVGLVTKGLGYFESMSKEHGLVPKPAHYACVVDLISRAGFL 770

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
            +A KF+ EMP +P++ +W  LLS+C +H +VE+   AA  + +L   D    YV LSN 
Sbjct: 771 SRARKFIEEMPIEPDATIWRTLLSACTVHKNVEVGEFAAQHLLELEPED-SATYVLLSNM 829

Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            A +GKWD   + R+ M+ RGV K+ G SW+
Sbjct: 830 YAVSGKWDCRDQTRQMMRNRGVKKEPGRSWI 860



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/376 (27%), Positives = 177/376 (47%), Gaps = 16/376 (4%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           Y  +IHA I   G+  +  IS  L+ L+ K G +  A ++FD L  +   ++  MI+G+ 
Sbjct: 130 YAEQIHARIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFS 189

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +NG  EE++ L  ++ ++G  P  Y FS +L  S C +  +    ++G  +HA + K   
Sbjct: 190 QNGYEEEAIHLFCEMHTAGIFPTPYVFSSVL--SGCTKIKL---FDVGEQLHALVFKYGS 244

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-- 240
             +  +  ALV  Y +      A  VF  M  K+ +   S+ISG   QGF + A E+F  
Sbjct: 245 SLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTK 304

Query: 241 --RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
             R  ++ D V   +++   + S     K  ++H  +IK     D+ +  AL+D+Y  C 
Sbjct: 305 MKRDYLKPDCVTVASLLSACA-SNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCS 363

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            I  A  +F   Q +NV  W  M+  +GK  N +++  +F  MQ   + PN  T+   L 
Sbjct: 364 DIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILR 423

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYAC--MVDLLGRAGSLEQALKFVLEMPEKP 416
            C   G +D G +I   + +      +   Y C  ++D+  + G L+ A   +L    + 
Sbjct: 424 TCTSVGALDLGEQIHTQVIK---TGFQFNVYVCSVLIDMYAKHGKLDTA-HVILRTLTED 479

Query: 417 NSDVWAALLSSCRLHD 432
           +   W AL+S    H+
Sbjct: 480 DVVSWTALISGYAQHN 495



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 81/321 (25%), Positives = 157/321 (48%), Gaps = 9/321 (2%)

Query: 56  INSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYN 115
           +NS +     K+H  I K G    + +  KL+ ++   G L    ++F+++P R++ +++
Sbjct: 21  LNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWD 80

Query: 116 YMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA 175
            +I+G+++       L L   ++     P   +F+ +L+A +  R  +         +HA
Sbjct: 81  KIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGI----RYAEQIHA 136

Query: 176 QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
           +I+   +    ++   L+  Y K G    AR VFD +  K+ +   +MISGF   G+ E+
Sbjct: 137 RIICHGLLCSPIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEE 196

Query: 236 AEEIFRKTVEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALV 291
           A  +F +     I     V+++++ G +  I+      ++H  + K     +  + +ALV
Sbjct: 197 AIHLFCEMHTAGIFPTPYVFSSVLSGCT-KIKLFDVGEQLHALVFKYGSSLETYVCNALV 255

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
            +Y++      A +VF  MQ K+  ++ S+I G  + G  + ALELF  M+   ++P+ V
Sbjct: 256 TLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCV 315

Query: 352 TFLGALSACGHAGLVDKGREI 372
           T    LSAC   G + KG ++
Sbjct: 316 TVASLLSACASNGALCKGEQL 336



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 173/386 (44%), Gaps = 74/386 (19%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           + +H +ILK     + VL   LVD Y   G       VF+ M  ++V     +ISGFM +
Sbjct: 30  KKLHGKILKLGFGNESVLCNKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEK 89

Query: 231 GFVEDAEEIFRKTVEKDI----VVYNAMIE---GYSISIETARKALEVHCQLIKNVFFED 283
                  ++F   +E+++    + + +++    G+ I I   R A ++H ++I +     
Sbjct: 90  KMSNRVLDLFSCMIEENVSPTEISFASVLRACSGHRIGI---RYAEQIHARIICHGLLCS 146

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
             + + L+ +YAK G I  AR+VFD++  K+  +W +MI G+ +NG   +A+ LFC M  
Sbjct: 147 PIISNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHT 206

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREI----------------------------FES 375
             + P    F   LS C    L D G ++                            F S
Sbjct: 207 AGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVS 266

Query: 376 MERDYS-MKPKME-HYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSC-- 428
            E+ +S M+ K E  +  ++  L + G  + AL+   +M     KP+    A+LLS+C  
Sbjct: 267 AEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACAS 326

Query: 429 --------RLHDDVEMANIAANEIFK-------LNANDRPGAY----------VALSNT- 462
                   +LH  V  A I+++ I +       +N +D   A+          V L N  
Sbjct: 327 NGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVM 386

Query: 463 LAAAGKWDSVTE---LREKMKLRGVL 485
           L A GK D+++E   +  +M+++G++
Sbjct: 387 LVAFGKLDNLSESFRIFRQMQIKGLI 412


>gi|297814704|ref|XP_002875235.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321073|gb|EFH51494.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 579

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 152/427 (35%), Positives = 251/427 (58%), Gaps = 14/427 (3%)

Query: 70  HITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEE 129
           H+   G +P   +   L+ +++K   L  A Q+FD++PQR + ++  MI+ Y K    ++
Sbjct: 38  HLYFNGHQPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQK 97

Query: 130 SLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLY 189
           +L L+  ++  G RP+ YT+S +L+A     S+V       RM+H  I+K  +++D  + 
Sbjct: 98  ALELLVLMLRDGVRPNVYTYSSVLRACNG-MSDV-------RMLHCGIIKEGLESDVYVR 149

Query: 190 TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIV 249
           +AL+D + K G+   A  VFD M+  + I   S+I GF      + A E+F++      +
Sbjct: 150 SALIDVFAKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFI 209

Query: 250 VYNAMIEGY---SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRV 306
              A +         +      ++ H  ++K  + +D+ L +ALVDMY KCG ++DARRV
Sbjct: 210 AEQATLTSVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDARRV 267

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           F+ M++++V TW++MI G  +NG   +AL+LF +M+    +PNY+T +G L AC HAGL+
Sbjct: 268 FNQMKERDVITWSTMISGLAQNGYSQEALKLFELMKSSGTKPNYITIVGVLFACSHAGLL 327

Query: 367 DKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           + G   F SM++ Y + P  EHY CM+DLLG+AG L+ A+K + EM  +P++  W  LL 
Sbjct: 328 EDGWYYFRSMKKLYGINPGREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLG 387

Query: 427 SCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLK 486
           +CR+  ++ +A  AA ++  L+  D  G Y  LSN  A + KWDSV E+R++M+  G+ K
Sbjct: 388 ACRVQRNMVLAEYAAKKVIALDPED-AGTYTVLSNIYANSQKWDSVEEIRKRMRDIGIKK 446

Query: 487 DTGCSWV 493
           + GCSW+
Sbjct: 447 EPGCSWI 453


>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
 gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
          Length = 913

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 164/443 (37%), Positives = 249/443 (56%), Gaps = 20/443 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP-QRTLSAYNYMIAGYL 122
           G+ IH    +TG + +  ++  L++L+ K G +  A ++FD     R L+ +N MI+GY 
Sbjct: 338 GVGIHGLCVRTGYEEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYA 397

Query: 123 KNGQVEESLSLVRKLVSSG------ERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
             G   ++L + R++           +PD +TF+ +LKA       +  PR  G  VHA 
Sbjct: 398 HAGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKAC----GGLGAPRE-GAQVHAA 452

Query: 177 ILKC--DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVE 234
           +        ++ +L  ALVD YVK G+   A  VF+ +  KN I  T+++ G   +G V 
Sbjct: 453 MAASGFSTASNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVM 512

Query: 235 DAEEIFRK----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSAL 290
           +A E+FR+        D  V ++++ G         +  +VHC  +K+    DV  G+++
Sbjct: 513 EALELFRRFWRSGARADAHVLSSIV-GVLADFALVEQGRQVHCYGVKSPAGTDVSAGNSI 571

Query: 291 VDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY 350
           VDMY KCG  D+A R+F  +  +NV +WT+MI+G GK+G   +A+ +F  M+   V+P+ 
Sbjct: 572 VDMYLKCGLPDEAERMFREIPARNVVSWTTMINGLGKHGLGREAVAMFEEMRAGGVEPDE 631

Query: 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410
           VT+L  LSAC HAGLVD+ R  F  + RD +++PK EHYACMVDLLGRAG L +A   + 
Sbjct: 632 VTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIR 691

Query: 411 EMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
            MP +P   VW  LLS+CR+H DV +   A + +  ++  D P  YV LSN  A AG W 
Sbjct: 692 TMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAID-GDNPVNYVTLSNVFAEAGAWR 750

Query: 471 SVTELREKMKLRGVLKDTGCSWV 493
              ++R+ M+ RG+ K  GCSWV
Sbjct: 751 ECHKVRDAMRRRGLKKQGGCSWV 773



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 104/412 (25%), Positives = 189/412 (45%), Gaps = 53/412 (12%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+++H  +TK G   +T +   L+ ++ KCG L  AG++F  +  R + ++  ++ G+L+
Sbjct: 236 GVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGMRDRNVVSWTALMVGFLQ 295

Query: 124 NGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +G     L L+ ++ ++ E  P+ YT S  LKA  CC   V      G  +H   ++   
Sbjct: 296 HGDATGCLRLLGEMRAASEAAPNEYTLSASLKA--CC---VTEDMGAGVGIHGLCVRTGY 350

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMM-LEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +   V+ ++LV  Y KGG+   AR VFD   L + +    +MISG+   G   DA  +FR
Sbjct: 351 EEHYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMISGYAHAGHGRDALLVFR 410

Query: 242 KTV----------EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVF--FEDVKLGSA 289
           +            + D   + ++++     +   R+  +VH  +  + F    +  L  A
Sbjct: 411 EMRRRRRRHEDQHQPDEFTFASLLKACG-GLGAPREGAQVHAAMAASGFSTASNAILAGA 469

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349
           LVDMY KCG++  A +VF+ +++KN   WT+++ G+ + G   +ALELF        + +
Sbjct: 470 LVDMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVMEALELFRRFWRSGARAD 529

Query: 350 YVTFLGALSACGHAGLVDKGREIF----------------------------ESMERDYS 381
                  +       LV++GR++                             +  ER + 
Sbjct: 530 AHVLSSIVGVLADFALVEQGRQVHCYGVKSPAGTDVSAGNSIVDMYLKCGLPDEAERMFR 589

Query: 382 MKP--KMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSC 428
             P   +  +  M++ LG+ G   +A+    EM     +P+   + ALLS+C
Sbjct: 590 EIPARNVVSWTTMINGLGKHGLGREAVAMFEEMRAGGVEPDEVTYLALLSAC 641



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 36/96 (37%), Positives = 55/96 (57%), Gaps = 1/96 (1%)

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
           R  +++H  L K  F  D  LG+ L+DMYAKCG++D A  VF  M+ +NV +WT+++ G+
Sbjct: 234 RGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEVFGGMRDRNVVSWTALMVGF 293

Query: 326 GKNGNPNQALELFCMMQECC-VQPNYVTFLGALSAC 360
            ++G+    L L   M+      PN  T   +L AC
Sbjct: 294 LQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKAC 329


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 143/442 (32%), Positives = 269/442 (60%), Gaps = 15/442 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKC---GALKYAGQMFDELPQRTLSAYNYMIAG 120
           G ++H+ + + G+  +  +   L+ ++ KC   G++  + ++F+++P+  + ++  +I  
Sbjct: 268 GKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITA 327

Query: 121 YLKNGQVE-ESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           Y+++G+ + E++ L  K++S   RP+ ++FS +LKA      N+  P   G  V++  +K
Sbjct: 328 YVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC----GNLSDPYT-GEQVYSYAVK 382

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
             + + + +  +L+  Y + G+   AR  FD++ EKN++   +++ G+      E+A  +
Sbjct: 383 LGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLL 442

Query: 240 FRKTVEKDIVV----YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
           F +  +  I +    + +++ G + SI    K  ++H +L+K  +  +  + +AL+ MY+
Sbjct: 443 FNEIADTGIGISAFTFASLLSG-AASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYS 501

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           +CG I+ A +VF+ M+ +NV +WTSMI G+ K+G   +ALE+F  M E   +PN +T++ 
Sbjct: 502 RCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVA 561

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            LSAC H G++ +G++ F SM +++ + P+MEHYACMVDLLGR+G L +A++F+  MP  
Sbjct: 562 VLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLM 621

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
            ++ VW  LL +CR+H + E+   AA  I +   +D P AY+ LSN  A+AG+W  V ++
Sbjct: 622 ADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDD-PAAYILLSNLHASAGQWKDVVKI 680

Query: 476 REKMKLRGVLKDTGCSWVGTES 497
           R+ MK R ++K+ GCSW+  E+
Sbjct: 681 RKSMKERNLIKEAGCSWIEVEN 702



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 198/389 (50%), Gaps = 26/389 (6%)

Query: 57  NSDTPFYGLKIHAHITKTG-VKPNTNISIKLLILHLK-CGALKYAGQMFDELPQRTLSAY 114
           N++  + G  I+  + KTG ++ +  +  +L+ + +K  G L  A ++FD++P+R L  +
Sbjct: 158 NANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTW 217

Query: 115 NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH 174
             MI  + + G   +++ L   +  SG  PD +T+S +L A T     + L   LG+ +H
Sbjct: 218 TLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACT----ELGLLA-LGKQLH 272

Query: 175 AQILKCDVKADDVLYTALVDSYVK---GGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
           +++++  +  D  +  +LVD Y K    G    +R VF+ M E NV+  T++I+ ++  G
Sbjct: 273 SRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSG 332

Query: 232 FVE-DAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
             + +A E+F K +   I      ++++++    ++       +V+   +K        +
Sbjct: 333 ECDKEAIELFCKMISGHIRPNHFSFSSVLKACG-NLSDPYTGEQVYSYAVKLGIASVNCV 391

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
           G++L+ MYA+ G+++DAR+ FD + +KN+ ++ +++DGY KN    +A  LF  + +  +
Sbjct: 392 GNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGI 451

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC----MVDLLGRAGSL 402
             +  TF   LS     G + KG +I   +     +K   +   C    ++ +  R G++
Sbjct: 452 GISAFTFASLLSGAASIGAMGKGEQIHGRL-----LKGGYKSNQCICNALISMYSRCGNI 506

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           E A +   EM ++ N   W ++++    H
Sbjct: 507 EAAFQVFNEMEDR-NVISWTSMITGFAKH 534



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 175/360 (48%), Gaps = 28/360 (7%)

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRN--LGRMVHAQILK 179
           L  G++  + S +  +      PD  T+S++LK  +C R      RN  LG++VH ++++
Sbjct: 20  LDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLK--SCIRF-----RNFQLGKLVHRKLMQ 72

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK-NVICSTSMISGFMSQGFVEDAEE 238
             ++ D V+   L+  Y K G T  AR++F+ M  K +++  ++M+S F +      A  
Sbjct: 73  SGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIW 132

Query: 239 IFRKTVEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFE-DVKLGSALVDM 293
            F   +E         + A+I   S +   A     ++  ++K  + E DV +G  L+DM
Sbjct: 133 TFLDMLELGFYPNEYCFAAVIRACS-NANYAWVGEIIYGFVVKTGYLEADVCVGCELIDM 191

Query: 294 YAK-CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           + K  G +  A +VFD M ++N+ TWT MI  + + G    A++LF  M+     P+  T
Sbjct: 192 FVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFT 251

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA---GSLEQALKFV 409
           +   LSAC   GL+  G+++   + R   +   +     +VD+  +    GS++ + K  
Sbjct: 252 YSSVLSACTELGLLALGKQLHSRVIR-LGLALDVCVGCSLVDMYAKCAADGSVDDSRKVF 310

Query: 410 LEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIF--KLNANDRPGAYVALSNTLAAAG 467
            +MPE  N   W A++++     + +   I   E+F   ++ + RP  + + S+ L A G
Sbjct: 311 EQMPEH-NVMSWTAIITAYVQSGECDKEAI---ELFCKMISGHIRPNHF-SFSSVLKACG 365



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 159/374 (42%), Gaps = 47/374 (12%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           S  S L+   N   P+ G +++++  K G+     +   L+ ++ + G ++ A + FD L
Sbjct: 356 SFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDIL 415

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
            ++ L +YN ++ GY KN + EE+  L  ++  +G     +TF+ +L  +    +     
Sbjct: 416 FEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGA----- 470

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
              G  +H ++LK   K++  +  AL+  Y + G    A  VF+ M ++NVI  TSMI+G
Sbjct: 471 MGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITG 530

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
           F   GF   A E+F K                   +ET  K  E+               
Sbjct: 531 FAKHGFATRALEMFHKM------------------LETGTKPNEI--------------T 558

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFT-----WTSMIDGYGKNGNPNQALELFCMM 341
             A++   +  G I + ++ F+ M +++        +  M+D  G++G   +A+E    M
Sbjct: 559 YVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 618

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGS 401
                   + T LGA    G+  L     E+    E D    P    Y  + +L   AG 
Sbjct: 619 PLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPD---DPAA--YILLSNLHASAGQ 673

Query: 402 LEQALKFVLEMPEK 415
            +  +K    M E+
Sbjct: 674 WKDVVKIRKSMKER 687


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 143/442 (32%), Positives = 269/442 (60%), Gaps = 15/442 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKC---GALKYAGQMFDELPQRTLSAYNYMIAG 120
           G ++H+ + + G+  +  +   L+ ++ KC   G++  + ++F+++P+  + ++  +I  
Sbjct: 250 GKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITA 309

Query: 121 YLKNGQVE-ESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           Y+++G+ + E++ L  K++S   RP+ ++FS +LKA      N+  P   G  V++  +K
Sbjct: 310 YVQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC----GNLSDPYT-GEQVYSYAVK 364

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
             + + + +  +L+  Y + G+   AR  FD++ EKN++   +++ G+      E+A  +
Sbjct: 365 LGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLL 424

Query: 240 FRKTVEKDIVV----YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
           F +  +  I +    + +++ G + SI    K  ++H +L+K  +  +  + +AL+ MY+
Sbjct: 425 FNEIADTGIGISAFTFASLLSG-AASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYS 483

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           +CG I+ A +VF+ M+ +NV +WTSMI G+ K+G   +ALE+F  M E   +PN +T++ 
Sbjct: 484 RCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVA 543

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            LSAC H G++ +G++ F SM +++ + P+MEHYACMVDLLGR+G L +A++F+  MP  
Sbjct: 544 VLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLM 603

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
            ++ VW  LL +CR+H + E+   AA  I +   +D P AY+ LSN  A+AG+W  V ++
Sbjct: 604 ADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDD-PAAYILLSNLHASAGQWKDVVKI 662

Query: 476 REKMKLRGVLKDTGCSWVGTES 497
           R+ MK R ++K+ GCSW+  E+
Sbjct: 663 RKSMKERNLIKEAGCSWIEVEN 684



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 198/389 (50%), Gaps = 26/389 (6%)

Query: 57  NSDTPFYGLKIHAHITKTG-VKPNTNISIKLLILHLK-CGALKYAGQMFDELPQRTLSAY 114
           N++  + G  I+  + KTG ++ +  +  +L+ + +K  G L  A ++FD++P+R L  +
Sbjct: 140 NANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTW 199

Query: 115 NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH 174
             MI  + + G   +++ L   +  SG  PD +T+S +L A T     + L   LG+ +H
Sbjct: 200 TLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACT----ELGLLA-LGKQLH 254

Query: 175 AQILKCDVKADDVLYTALVDSYVK---GGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
           +++++  +  D  +  +LVD Y K    G    +R VF+ M E NV+  T++I+ ++  G
Sbjct: 255 SRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSG 314

Query: 232 FVE-DAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
             + +A E+F K +   I      ++++++    ++       +V+   +K        +
Sbjct: 315 ECDKEAIELFCKMISGHIRPNHFSFSSVLKACG-NLSDPYTGEQVYSYAVKLGIASVNCV 373

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
           G++L+ MYA+ G+++DAR+ FD + +KN+ ++ +++DGY KN    +A  LF  + +  +
Sbjct: 374 GNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGI 433

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC----MVDLLGRAGSL 402
             +  TF   LS     G + KG +I   +     +K   +   C    ++ +  R G++
Sbjct: 434 GISAFTFASLLSGAASIGAMGKGEQIHGRL-----LKGGYKSNQCICNALISMYSRCGNI 488

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           E A +   EM ++ N   W ++++    H
Sbjct: 489 EAAFQVFNEMEDR-NVISWTSMITGFAKH 516



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 95/360 (26%), Positives = 175/360 (48%), Gaps = 28/360 (7%)

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRN--LGRMVHAQILK 179
           L  G++  + S +  +      PD  T+S++LK  +C R      RN  LG++VH ++++
Sbjct: 2   LDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLK--SCIRF-----RNFQLGKLVHRKLMQ 54

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK-NVICSTSMISGFMSQGFVEDAEE 238
             ++ D V+   L+  Y K G T  AR++F+ M  K +++  ++M+S F +      A  
Sbjct: 55  SGLELDSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIW 114

Query: 239 IFRKTVEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFE-DVKLGSALVDM 293
            F   +E         + A+I   S +   A     ++  ++K  + E DV +G  L+DM
Sbjct: 115 TFLDMLELGFYPNEYCFAAVIRACS-NANYAWVGEIIYGFVVKTGYLEADVCVGCELIDM 173

Query: 294 YAK-CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           + K  G +  A +VFD M ++N+ TWT MI  + + G    A++LF  M+     P+  T
Sbjct: 174 FVKGSGDLGSAYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFT 233

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA---GSLEQALKFV 409
           +   LSAC   GL+  G+++   + R   +   +     +VD+  +    GS++ + K  
Sbjct: 234 YSSVLSACTELGLLALGKQLHSRVIR-LGLALDVCVGCSLVDMYAKCAADGSVDDSRKVF 292

Query: 410 LEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIF--KLNANDRPGAYVALSNTLAAAG 467
            +MPE  N   W A++++     + +   I   E+F   ++ + RP  + + S+ L A G
Sbjct: 293 EQMPEH-NVMSWTAIITAYVQSGECDKEAI---ELFCKMISGHIRPNHF-SFSSVLKACG 347



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 159/374 (42%), Gaps = 47/374 (12%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           S  S L+   N   P+ G +++++  K G+     +   L+ ++ + G ++ A + FD L
Sbjct: 338 SFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDIL 397

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
            ++ L +YN ++ GY KN + EE+  L  ++  +G     +TF+ +L  +    +     
Sbjct: 398 FEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGA----- 452

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
              G  +H ++LK   K++  +  AL+  Y + G    A  VF+ M ++NVI  TSMI+G
Sbjct: 453 MGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITG 512

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
           F   GF   A E+F K                   +ET  K  E+               
Sbjct: 513 FAKHGFATRALEMFHKM------------------LETGTKPNEI--------------T 540

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFT-----WTSMIDGYGKNGNPNQALELFCMM 341
             A++   +  G I + ++ F+ M +++        +  M+D  G++G   +A+E    M
Sbjct: 541 YVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 600

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGS 401
                   + T LGA    G+  L     E+    E D    P    Y  + +L   AG 
Sbjct: 601 PLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPD---DPAA--YILLSNLHASAGQ 655

Query: 402 LEQALKFVLEMPEK 415
            +  +K    M E+
Sbjct: 656 WKDVVKIRKSMKER 669


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  286 bits (731), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 151/434 (34%), Positives = 252/434 (58%), Gaps = 10/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYA-GQMFDELPQRTLSAYNYMIAGYL 122
           G  IH   TK  +  +  +   L+ ++ KCG ++ A  ++FD +  +T+S++N ++ GY 
Sbjct: 227 GQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYA 286

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +N    ++L L  ++  SG  PD +T   +L A +  +S      + G  +H   L+  +
Sbjct: 287 QNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKS-----LHYGEEIHGFALRNGL 341

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             D  +  +L+  Y+  GK   A+++FD M  ++++    MI+G+   G  ++A  +FR+
Sbjct: 342 AVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQ 401

Query: 243 TVEKDIVVYNAMIE---GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            +   I  Y   I    G    +   R   E+HC  +K    ED+ + S+++DMYAK G 
Sbjct: 402 MLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTEDIFVSSSIIDMYAKGGC 461

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I  ++R+FD +++K+V +W  +I GYG +G   +ALELF  M    ++P+  TF G L A
Sbjct: 462 IGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMA 521

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C HAGLV+ G E F  M   ++++PK+EHY C+VD+LGRAG ++ AL+ + EMP  P+S 
Sbjct: 522 CSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSR 581

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +W++LLSSCR+H ++ +    AN++ +L   ++P  YV +SN  A +GKWD V  +R +M
Sbjct: 582 IWSSLLSSCRIHGNLGLGEKVANKLLELEP-EKPENYVLISNLFAGSGKWDDVRRVRGRM 640

Query: 480 KLRGVLKDTGCSWV 493
           K  G+ KD GCSW+
Sbjct: 641 KDIGLQKDAGCSWI 654



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 153/297 (51%), Gaps = 12/297 (4%)

Query: 82  ISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG 141
           ++ +++ ++  CG+   +  +FD+L ++ L  +N +++ Y +N   E+++S+  +L+S  
Sbjct: 143 LNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVT 202

Query: 142 E-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGG 200
           E +PD +T   ++KA   C   + L   LG+++H    K D+ +D  +  AL+  Y K G
Sbjct: 203 EHKPDNFTLPCVIKA---CAGLLDL--GLGQIIHGMATKMDLVSDVFVGNALIAMYGKCG 257

Query: 201 KTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMI 255
               A + VFD+M  K V    +++ G+        A +++ +     ++ D     +++
Sbjct: 258 LVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLL 317

Query: 256 EGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
              S  +++     E+H   ++N    D  +G +L+ +Y  CGK   A+ +FD M+ +++
Sbjct: 318 LACS-RMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSL 376

Query: 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
            +W  MI GY +NG P++A+ LF  M    +QP  +  +    AC     +  G+E+
Sbjct: 377 VSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKEL 433



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/326 (28%), Positives = 161/326 (49%), Gaps = 20/326 (6%)

Query: 25  PNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISI 84
           P +     LQ  DS  +P   T + S L       +  YG +IH    + G+  +  I I
Sbjct: 291 PRKALDLYLQMTDSGLDPDWFT-IGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGI 349

Query: 85  KLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERP 144
            LL L++ CG    A  +FD +  R+L ++N MIAGY +NG  +E+++L R+++S G +P
Sbjct: 350 SLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQP 409

Query: 145 DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSY 204
             Y  +++     C  S +   R LG+ +H   LK  +  D  + ++++D Y KGG    
Sbjct: 410 --YEIAIMCVCGAC--SQLSALR-LGKELHCFALKAHLTEDIFVSSSIIDMYAKGGCIGL 464

Query: 205 ARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIET 264
           ++ +FD + EK+V     +I+G+   G  ++A E+F K +   +   +    G  ++   
Sbjct: 465 SQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSH 524

Query: 265 A---RKALEVHCQLIKNVFFEDVKLG--SALVDMYAKCGKIDDARRVFDHMQ-QKNVFTW 318
           A      LE   Q++ N+   + KL   + +VDM  + G+IDDA R+ + M    +   W
Sbjct: 525 AGLVEDGLEYFNQML-NLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIW 583

Query: 319 TSMIDGYGKNGN-------PNQALEL 337
           +S++     +GN        N+ LEL
Sbjct: 584 SSLLSSCRIHGNLGLGEKVANKLLEL 609



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/261 (27%), Positives = 130/261 (49%), Gaps = 18/261 (6%)

Query: 123 KNGQVEESLSLVRK-----LVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQI 177
           ++G ++E+L  +++     ++ S +R +      +L  +   R ++ + R L  MV A  
Sbjct: 79  ESGNLKEALDFLQRESDDVVLDSAQRSEAMG---VLLQACGQRKDIEVGRRLHEMVSAST 135

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
             C+   D VL T ++  Y   G  S +R+VFD +  KN+    +++S +      EDA 
Sbjct: 136 QFCN---DFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAM 192

Query: 238 EIFRKTV-----EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVD 292
            IF + +     + D      +I+  +  ++     + +H    K     DV +G+AL+ 
Sbjct: 193 SIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQI-IHGMATKMDLVSDVFVGNALIA 251

Query: 293 MYAKCGKIDDA-RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
           MY KCG +++A +RVFD M  K V +W +++ GY +N +P +AL+L+  M +  + P++ 
Sbjct: 252 MYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWF 311

Query: 352 TFLGALSACGHAGLVDKGREI 372
           T    L AC     +  G EI
Sbjct: 312 TIGSLLLACSRMKSLHYGEEI 332



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/167 (28%), Positives = 84/167 (50%), Gaps = 9/167 (5%)

Query: 266 RKALEVHCQLIKNV-----FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
           RK +EV  +L + V     F  D  L + ++ MY+ CG   D+R VFD +++KN+F W +
Sbjct: 118 RKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNA 177

Query: 321 MIDGYGKNGNPNQALELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKG-REIFESMER 378
           ++  Y +N     A+ +F  ++     +P+  T    + AC  AGL+D G  +I   M  
Sbjct: 178 IVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKAC--AGLLDLGLGQIIHGMAT 235

Query: 379 DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
              +   +     ++ + G+ G +E+A+K V ++ +      W ALL
Sbjct: 236 KMDLVSDVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALL 282


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 154/434 (35%), Positives = 254/434 (58%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IHAHI ++    +  +S  L  +++KCGA K A ++F+ L  R + A+N MI G++ 
Sbjct: 249 GKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVD 308

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +GQ+EE+     +++  G  PD  T++ +L  S C R   P     G+ +HA+  K  + 
Sbjct: 309 SGQLEEAHGTFHRMLEEGVAPDRATYTTVL--SACAR---PGGLARGKEIHARAAKDGLV 363

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +D     AL++ Y K G    AR VFD M +++V+  T+++  +     V ++   F++ 
Sbjct: 364 SDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQM 423

Query: 244 VEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           +++ +    + Y  +++  S  +   +   E+H +++K     D+ + +AL+ MY KCG 
Sbjct: 424 LQQGVKANKITYMCVLKACSNPV-ALKWGKEIHAEVVKAGLLADLAVTNALMSMYFKCGS 482

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ++DA RVF+ M  ++V TW ++I G G+NG   +AL+ + +M+   ++PN  TF+  LSA
Sbjct: 483 VEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSA 542

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C    LV++GR  F  M +DY + P  +HYACMVD+L RAG L +A   +L +P KP++ 
Sbjct: 543 CRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAEDVILTIPLKPSAA 602

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +W ALL++CR+H +VE+   AA    KL   +  G YV+LS   AAAG W  V +LR+ M
Sbjct: 603 MWGALLAACRIHCNVEIGERAAEHCLKLEPQN-AGLYVSLSAIYAAAGMWRDVAKLRKFM 661

Query: 480 KLRGVLKDTGCSWV 493
           K RGV K+ G SW+
Sbjct: 662 KERGVKKEPGRSWI 675



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 112/401 (27%), Positives = 201/401 (50%), Gaps = 26/401 (6%)

Query: 31  PKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILH 90
           P++ +YD +            LQ  + +     G ++H HI + GVKPN  I+  LL L+
Sbjct: 24  PQVDSYDYVK----------LLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLY 73

Query: 91  LKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFS 150
             CG++  A Q+FD+   +++ ++N MI+GY   G  +E+ +L   +      PD +TF 
Sbjct: 74  AHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFV 133

Query: 151 MILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFD 210
            IL A   C S  P   N GR +H ++++  +  D  +  AL+  Y K G    AR VFD
Sbjct: 134 SILSA---CSS--PAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFD 188

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETAR 266
            M  ++ +  T++   +   G+ E++ + +   +++ +    + Y  ++     S+    
Sbjct: 189 AMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACG-SLAALE 247

Query: 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
           K  ++H  ++++ +  DV++ +AL  MY KCG   DAR VF+ +  ++V  W +MI G+ 
Sbjct: 248 KGKQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFV 307

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM 386
            +G   +A   F  M E  V P+  T+   LSAC   G + +G+EI     +D  +   +
Sbjct: 308 DSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEIHARAAKD-GLVSDV 366

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV--WAALL 425
                ++++  +AGS++ A +    MP++   DV  W  LL
Sbjct: 367 RFGNALINMYSKAGSMKDARQVFDRMPKR---DVVSWTTLL 404



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 133/244 (54%), Gaps = 10/244 (4%)

Query: 133 LVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTAL 192
           +++ L   G + D Y +  +L+  +C ++       +G+ VH  IL+C VK +  +   L
Sbjct: 15  VLQYLHRKGPQVDSYDYVKLLQ--SCVKAK---DLAVGKQVHEHILRCGVKPNVYITNTL 69

Query: 193 VDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDI 248
           +  Y   G  + AR +FD    K+V+    MISG+  +G  ++A  +F    ++ +E D 
Sbjct: 70  LKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDK 129

Query: 249 VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFD 308
             + +++   S S        E+H ++++     D  +G+AL+ MYAKCG + DARRVFD
Sbjct: 130 FTFVSILSACS-SPAVLNWGREIHVRVMEAGLANDTTVGNALISMYAKCGSVRDARRVFD 188

Query: 309 HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDK 368
            M  ++  +WT++   Y ++G   ++L+ +  M +  V+P+ +T++  LSACG    ++K
Sbjct: 189 AMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEK 248

Query: 369 GREI 372
           G++I
Sbjct: 249 GKQI 252



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/117 (29%), Positives = 62/117 (52%), Gaps = 9/117 (7%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L A S P AL+         +G +IHA + K G+  +  ++  L+ ++ KCG+++ A ++
Sbjct: 439 LKACSNPVALK---------WGKEIHAEVVKAGLLADLAVTNALMSMYFKCGSVEDAIRV 489

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCC 159
           F+ +  R +  +N +I G  +NG+  E+L     + S G RP+  TF  +L A   C
Sbjct: 490 FEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMRPNAATFVNVLSACRVC 546


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 157/434 (36%), Positives = 251/434 (57%), Gaps = 12/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH +  ++G +   N++  LL ++ KCG+ + A  +F  +  +T+ ++N MI G  +
Sbjct: 265 GRSIHGYAFRSGFESLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQ 324

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG+ EE+ +   K++  GE P   T   +L A   C +   L R  G  VH  + K  + 
Sbjct: 325 NGESEEAFATFLKMLDEGEVPTRVTMMGVLLA---CANLGDLER--GWFVHKLLDKLKLD 379

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
           ++  +  +L+  Y K  +   A  +F+  LEK  +   +MI G+   G V++A  +F   
Sbjct: 380 SNVSVMNSLISMYSKCKRVDIAASIFNN-LEKTNVTWNAMILGYAQNGCVKEALNLFCMM 438

Query: 241 -RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
             + ++ D      +I   +      R+A  +H   ++     +V + +ALVDMYAKCG 
Sbjct: 439 QSQGIKLDCFTLVGVITALA-DFSVNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGA 497

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I  AR++FD MQ+++V TW +MIDGYG +G   + L+LF  MQ+  V+PN +TFL  +SA
Sbjct: 498 IKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISA 557

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H+G V++G  +F+SM+ DY ++P M+HY+ MVDLLGRAG L+ A  F+ EMP KP   
Sbjct: 558 CSHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGIS 617

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           V  A+L +C++H +VE+   AA ++FKL+  D  G +V L+N  A+   WD V ++R  M
Sbjct: 618 VLGAMLGACKIHKNVELGEKAAQKLFKLDP-DEGGYHVLLANIYASNSMWDKVAKVRTAM 676

Query: 480 KLRGVLKDTGCSWV 493
           + +G+ K  GCSWV
Sbjct: 677 EDKGLHKTPGCSWV 690



 Score =  151 bits (381), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 184/371 (49%), Gaps = 11/371 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH  I   G + N  +   ++ L+ KC  +  A +MF+ +  + L ++  ++AGY +
Sbjct: 164 GREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQ 223

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  + +L LV ++  +G++PD  T   IL A    ++       +GR +H    +   +
Sbjct: 224 NGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKA-----LRIGRSIHGYAFRSGFE 278

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +   +  AL+D Y K G    AR+VF  M  K V+   +MI G    G  E+A   F K 
Sbjct: 279 SLVNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKM 338

Query: 244 VEKDIVVYNAMIEGYSIS---IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           +++  V     + G  ++   +    +   VH  L K     +V + ++L+ MY+KC ++
Sbjct: 339 LDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLDSNVSVMNSLISMYSKCKRV 398

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           D A  +F+++++ NV TW +MI GY +NG   +AL LFCMMQ   ++ +  T +G ++A 
Sbjct: 399 DIAASIFNNLEKTNV-TWNAMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITAL 457

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
                V++  +    +     M   +     +VD+  + G+++ A K + +M ++ +   
Sbjct: 458 ADFS-VNRQAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAIKTARK-LFDMMQERHVIT 515

Query: 421 WAALLSSCRLH 431
           W A++     H
Sbjct: 516 WNAMIDGYGTH 526



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 153/317 (48%), Gaps = 10/317 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +I   I K G         K++ L  K G+   A ++F+ +  +    Y+ M+ GY KN 
Sbjct: 65  QILPFIIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNS 124

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
            + ++L    +++    R     ++ +L+    C  N+ L +  GR +H  I+    +++
Sbjct: 125 SLGDALCFFLRMMCDEVRLVVGDYACLLQL---CGENLDLKK--GREIHGLIITNGFESN 179

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             + TA++  Y K  +   A  +F+ M  K+++  T++++G+   G  + A ++  +  E
Sbjct: 180 LFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQE 239

Query: 246 K----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
                D V   +++   +  ++  R    +H    ++ F   V + +AL+DMY KCG   
Sbjct: 240 AGQKPDSVTLVSILPAVA-DMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSAR 298

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            AR VF  M+ K V +W +MIDG  +NG   +A   F  M +    P  VT +G L AC 
Sbjct: 299 IARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACA 358

Query: 362 HAGLVDKGREIFESMER 378
           + G +++G  + + +++
Sbjct: 359 NLGDLERGWFVHKLLDK 375



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/320 (25%), Positives = 150/320 (46%), Gaps = 26/320 (8%)

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
           I+K     + +  T ++  + K G  S A  VF+ +  K  +    M+ G+     + DA
Sbjct: 70  IIKNGFYNEHLFQTKVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDA 129

Query: 237 EEIFRKTV--EKDIVV--YNAMIE--GYSISIETARKALEVHCQLIKNVFFEDVKLGSAL 290
              F + +  E  +VV  Y  +++  G ++ ++  R   E+H  +I N F  ++ + +A+
Sbjct: 130 LCFFLRMMCDEVRLVVGDYACLLQLCGENLDLKKGR---EIHGLIITNGFESNLFVMTAV 186

Query: 291 VDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY 350
           + +YAKC +ID+A ++F+ MQ K++ +WT+++ GY +NG+  +AL+L   MQE   +P+ 
Sbjct: 187 MSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDS 246

Query: 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA----CMVDLLGRAGSLEQAL 406
           VT +  L A      +  GR I       Y+ +   E        ++D+  + GS   A 
Sbjct: 247 VTLVSILPAVADMKALRIGRSI-----HGYAFRSGFESLVNVTNALLDMYFKCGSARIA- 300

Query: 407 KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
           + V +         W  ++  C  + + E A   A  +  L+  + P     +   LA A
Sbjct: 301 RLVFKGMRSKTVVSWNTMIDGCAQNGESEEA--FATFLKMLDEGEVPTRVTMMGVLLACA 358

Query: 467 GKWD-----SVTELREKMKL 481
              D      V +L +K+KL
Sbjct: 359 NLGDLERGWFVHKLLDKLKL 378


>gi|9279581|dbj|BAB01039.1| unnamed protein product [Arabidopsis thaliana]
          Length = 717

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 167/459 (36%), Positives = 261/459 (56%), Gaps = 17/459 (3%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKT-GVKPNTNISIKLLILHLKCGALKYAGQM 102
           T  +    L   I++ +  +G+KI + I     ++ N  +  KL+ L   C  L  A ++
Sbjct: 137 TPEAYTDLLHACISAKSLHHGIKICSLILNNPSLRHNPKLLSKLITLFSVCRRLDLARKI 196

Query: 103 FDELPQRTL---SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCC 159
           FD++   +L     +  M  GY +NG   ++L +   ++ S   P  ++ S+ LKA    
Sbjct: 197 FDDVTDSSLLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDL 256

Query: 160 RSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVIC 219
           +        +GR +HAQI+K   K D V+Y  L+  Y++ G    AR VFD M E+NV+ 
Sbjct: 257 KD-----LRVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVT 311

Query: 220 STSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL-----EVHCQ 274
             S+IS    +  V +   +FRK  E+ I    A +   +I    +R A      E+H Q
Sbjct: 312 WNSLISVLSKKVRVHEMFNLFRKMQEEMIGFSWATLT--TILPACSRVAALLTGKEIHAQ 369

Query: 275 LIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQA 334
           ++K+    DV L ++L+DMY KCG+++ +RRVFD M  K++ +W  M++ Y  NGN  + 
Sbjct: 370 ILKSKEKPDVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEV 429

Query: 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394
           + LF  M E  V P+ +TF+  LS C   GL + G  +FE M+ ++ + P +EHYAC+VD
Sbjct: 430 INLFEWMIESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSPALEHYACLVD 489

Query: 395 LLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG 454
           +LGRAG +++A+K +  MP KP++ +W +LL+SCRLH +V +  IAA E+F L  ++ PG
Sbjct: 490 ILGRAGKIKEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELFVLEPHN-PG 548

Query: 455 AYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            YV +SN  A A  WD+V ++RE MK RGV K+ GCSWV
Sbjct: 549 NYVMVSNIYADAKMWDNVDKIREMMKQRGVKKEAGCSWV 587


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 153/434 (35%), Positives = 252/434 (58%), Gaps = 12/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH  + K+G+ P++++   L+ ++ KCG+  YA ++F E+P+R + ++  +I G++ 
Sbjct: 210 GKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVA 269

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G     L +  ++++ G  P+ YTF  IL++   C S   +  +LG+ VHAQI+K  + 
Sbjct: 270 EG-YGSGLRIFNQMLAEGFNPNMYTFISILRS---CSSLSDV--DLGKQVHAQIVKNSLD 323

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
            +D + TALVD Y K      A  +F+ ++++++   T +++G+   G  E A + F   
Sbjct: 324 GNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQM 383

Query: 241 -RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            R+ V+ +     + + G S  I T     ++H   IK     D+ + SALVDMYAKCG 
Sbjct: 384 QREGVKPNEFTLASSLSGCS-RIATLDSGRQLHSMAIKAGQSGDMFVASALVDMYAKCGC 442

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ++DA  VFD +  ++  +W ++I GY ++G   +AL+ F  M +    P+ VTF+G LSA
Sbjct: 443 VEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSA 502

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H GL+++G++ F S+ + Y + P +EHYACMVD+LGRAG   +   F+ EM    N  
Sbjct: 503 CSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKLTSNVL 562

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +W  +L +C++H ++E    AA ++F+L   +    Y+ LSN  AA G WD VT +R  M
Sbjct: 563 IWETVLGACKMHGNIEFGERAAMKLFELEP-EIDSNYILLSNMFAAKGMWDDVTNVRALM 621

Query: 480 KLRGVLKDTGCSWV 493
             RGV K+ GCSWV
Sbjct: 622 STRGVKKEPGCSWV 635



 Score =  164 bits (414), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 217/457 (47%), Gaps = 45/457 (9%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           YG  IHA + K G + +  IS   + +++K  +++   Q F  +    L++ N +++G+ 
Sbjct: 108 YGESIHACVCKYGFESDILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFC 167

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
                ++   ++ +L+  G  P+ YTF  ILK    C S   L  N G+ +H Q++K  +
Sbjct: 168 DTETCDQGPRILIQLLVEGFEPNMYTFISILKT---CASKGDL--NEGKAIHGQVIKSGI 222

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGF---VEDAEEI 239
             D  L+ +LV+ Y K G  +YA  VF  + E++V+  T++I+GF+++G+   +    ++
Sbjct: 223 NPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEGYGSGLRIFNQM 282

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
             +    ++  + +++   S S+       +VH Q++KN    +  +G+ALVDMYAK   
Sbjct: 283 LAEGFNPNMYTFISILRSCS-SLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRF 341

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ++DA  +F+ + ++++F WT ++ GY ++G   +A++ F  MQ   V+PN  T   +LS 
Sbjct: 342 LEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSG 401

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE---------------- 403
           C     +D GR++  SM         M   + +VD+  + G +E                
Sbjct: 402 CSRIATLDSGRQL-HSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVS 460

Query: 404 ------------------QALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIF 445
                             +A + +L+    P+   +  +LS+C     +E      N + 
Sbjct: 461 WNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLS 520

Query: 446 KL-NANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
           K+         Y  + + L  AGK+  V    E+MKL
Sbjct: 521 KIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKL 557



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 93/409 (22%), Positives = 180/409 (44%), Gaps = 62/409 (15%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           KI   + K G+ P++++   L+ +++KC +L+ A Q+ +E+P + +  +N  ++      
Sbjct: 10  KIIFRVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPY 69

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
            ++E++ L   +  +  R + + F+ ++ A+     N     + G  +HA + K   ++D
Sbjct: 70  PLQEAVQLFYLMRHTRIRLNQFIFASLISAAASLGDN-----HYGESIHACVCKYGFESD 124

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
            ++  A V  Y+K          F  M+ +N+    +++SGF      +    I      
Sbjct: 125 ILISNAFVTMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRI------ 178

Query: 246 KDIVVYNAMIEGYSISIETARKALE-------------VHCQLIKNVFFEDVKLGSALVD 292
               +   ++EG+  ++ T    L+             +H Q+IK+    D  L ++LV+
Sbjct: 179 ----LIQLLVEGFEPNMYTFISILKTCASKGDLNEGKAIHGQVIKSGINPDSHLWNSLVN 234

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           +YAKCG  + A +VF  + +++V +WT++I G+   G     L +F  M      PN  T
Sbjct: 235 VYAKCGSANYACKVFGEIPERDVVSWTALITGFVAEG-YGSGLRIFNQMLAEGFNPNMYT 293

Query: 353 FLGALSACGHAGLVDKGREI----------------------------FESMERDYSMKP 384
           F+  L +C     VD G+++                             E  E  ++   
Sbjct: 294 FISILRSCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLI 353

Query: 385 KMEHYACMVDLLGRA--GSLEQALKFVLEMPE---KPNSDVWAALLSSC 428
           K + +A  V + G A  G  E+A+K  ++M     KPN    A+ LS C
Sbjct: 354 KRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGC 402


>gi|359482590|ref|XP_002284545.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 648

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 169/490 (34%), Positives = 262/490 (53%), Gaps = 28/490 (5%)

Query: 25  PNQTFPPKLQNYD----------SLSNP------LTAT--SLPSALQHYINSDTPFYGLK 66
           PN +F      +D          S SNP      LT T  +  S LQ  I       G +
Sbjct: 37  PNPSFTSSAPQFDNNQTHLKAIPSCSNPHAESTCLTPTYSNYASLLQSCIARKAIKPGKQ 96

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +HA +   G   +T I+ KL+ L+  C +L  A  +FD +P+  +  +N +I GY  NG 
Sbjct: 97  LHAQVCLAGFGFDTVIATKLVNLYCVCDSLSSARLLFDRIPKHNIFLWNVLIRGYAWNGP 156

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
            E ++ L  ++   G  PD +TF  +LKA   C +   +    GR +H  +++   + D 
Sbjct: 157 YEAAVQLYYQMFDYGLVPDNFTFPFVLKA---CAALSAIEH--GREIHEHVVQTGWEKDV 211

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
            +  AL+D Y K G    AR VFD +L ++ +   SM++ +   G  +    +  + V  
Sbjct: 212 FVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVLT 271

Query: 247 DIVVYNA-MIEGYSISIETAR--KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
            +    A ++   S S + A   +  E+H    +  F    K+ +ALVDMYAKCG +  A
Sbjct: 272 GLRPTEATLVTAISASADNAALPQGRELHGLSWRQEFESHDKVKTALVDMYAKCGSVRVA 331

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
           R +F+ +  K V +W +MI GY  +G+  +AL+LF  M     +P+++TF+G LSAC H 
Sbjct: 332 RNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRV-AKPDHITFVGVLSACSHG 390

Query: 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA 423
           GL+++G   FE+M RDY + P ++HY CMVDLLG +G L++A   +++M   P+S VW A
Sbjct: 391 GLLEEGWMFFETMIRDYKIDPTVQHYTCMVDLLGHSGRLDEAYNLIMQMKVLPDSGVWGA 450

Query: 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483
           LL+SC++H +VE+  IA   + +L  +D  G YV LSN  A AGKW+ V +LR+ M  R 
Sbjct: 451 LLNSCKIHANVELGEIALERLIELEPDD-AGNYVILSNIYAQAGKWEGVAKLRKLMTDRR 509

Query: 484 VLKDTGCSWV 493
           + K   CSW+
Sbjct: 510 LKKSIACSWI 519



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 180/402 (44%), Gaps = 69/402 (17%)

Query: 20  YTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPN 79
           Y LVP N TFP  L+          A +  SA++H         G +IH H+ +TG + +
Sbjct: 170 YGLVPDNFTFPFVLK----------ACAALSAIEH---------GREIHEHVVQTGWEKD 210

Query: 80  TNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVS 139
             +   L+ ++ KCG +  A ++FD++  R    +N M+A Y +NG  +  LSL  ++V 
Sbjct: 211 VFVGAALIDMYAKCGCVGSAREVFDKILVRDAVLWNSMLAAYSQNGHPDACLSLCSEMVL 270

Query: 140 SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKG 199
           +G RP   T    + AS     N  LP+  GR +H    + + ++ D + TALVD Y K 
Sbjct: 271 TGLRPTEATLVTAISASA---DNAALPQ--GRELHGLSWRQEFESHDKVKTALVDMYAKC 325

Query: 200 GKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR---KTVEKDIVVYNAMIE 256
           G    AR +F+ +  K V+   +MI+G+   G   +A ++F    +  + D + +  ++ 
Sbjct: 326 GSVRVARNLFERLGVKRVVSWNAMITGYAMHGHATEALDLFEEMNRVAKPDHITFVGVLS 385

Query: 257 GYSISIETARKALEVHCQLIKN--VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKN 314
             S            H  L++   +FFE +                     + D+     
Sbjct: 386 ACS------------HGGLLEEGWMFFETM---------------------IRDYKIDPT 412

Query: 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374
           V  +T M+D  G +G  ++A  L   M+   V P+   +   L++C     V+ G EI  
Sbjct: 413 VQHYTCMVDLLGHSGRLDEAYNLIMQMK---VLPDSGVWGALLNSCKIHANVELG-EI-- 466

Query: 375 SMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
           ++ER   ++P    +Y  + ++  +AG  E   K    M ++
Sbjct: 467 ALERLIELEPDDAGNYVILSNIYAQAGKWEGVAKLRKLMTDR 508


>gi|15231831|ref|NP_188050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546762|sp|Q9LUL5.2|PP229_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g14330
 gi|332641981|gb|AEE75502.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 710

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 166/451 (36%), Positives = 259/451 (57%), Gaps = 17/451 (3%)

Query: 52  LQHYINSDTPFYGLKIHAHITKT-GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRT 110
           L   I++ +  +G+KI + I     ++ N  +  KL+ L   C  L  A ++FD++   +
Sbjct: 138 LHACISAKSLHHGIKICSLILNNPSLRHNPKLLSKLITLFSVCRRLDLARKIFDDVTDSS 197

Query: 111 L---SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR 167
           L     +  M  GY +NG   ++L +   ++ S   P  ++ S+ LKA    +       
Sbjct: 198 LLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKD-----L 252

Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
            +GR +HAQI+K   K D V+Y  L+  Y++ G    AR VFD M E+NV+   S+IS  
Sbjct: 253 RVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISVL 312

Query: 228 MSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL-----EVHCQLIKNVFFE 282
             +  V +   +FRK  E+ I    A +   +I    +R A      E+H Q++K+    
Sbjct: 313 SKKVRVHEMFNLFRKMQEEMIGFSWATLT--TILPACSRVAALLTGKEIHAQILKSKEKP 370

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           DV L ++L+DMY KCG+++ +RRVFD M  K++ +W  M++ Y  NGN  + + LF  M 
Sbjct: 371 DVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMI 430

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
           E  V P+ +TF+  LS C   GL + G  +FE M+ ++ + P +EHYAC+VD+LGRAG +
Sbjct: 431 ESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSPALEHYACLVDILGRAGKI 490

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
           ++A+K +  MP KP++ +W +LL+SCRLH +V +  IAA E+F L  ++ PG YV +SN 
Sbjct: 491 KEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELFVLEPHN-PGNYVMVSNI 549

Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            A A  WD+V ++RE MK RGV K+ GCSWV
Sbjct: 550 YADAKMWDNVDKIREMMKQRGVKKEAGCSWV 580


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 143/442 (32%), Positives = 268/442 (60%), Gaps = 15/442 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKC---GALKYAGQMFDELPQRTLSAYNYMIAG 120
           G ++H+ + + G+  +  +   L+ ++ KC   G++  + ++F+++P+  + ++  +I  
Sbjct: 75  GKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITA 134

Query: 121 YLKNGQVE-ESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           Y ++G+ + E++ L  K++S   RP+ ++FS +LKA      N+  P   G  V++  +K
Sbjct: 135 YAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC----GNLSDPYT-GEQVYSYAVK 189

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
             + + + +  +L+  Y + G+   AR  FD++ EKN++   +++ G+      E+A  +
Sbjct: 190 LGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLL 249

Query: 240 FRKTVEKDIVV----YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
           F +  +  I +    + +++ G + SI    K  ++H +L+K  +  +  + +AL+ MY+
Sbjct: 250 FNEIADTGIGISAFTFASLLSG-AASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYS 308

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           +CG I+ A +VF+ M+ +NV +WTSMI G+ K+G   +ALE+F  M E   +PN +T++ 
Sbjct: 309 RCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVA 368

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            LSAC H G++ +G++ F SM +++ + P+MEHYACMVDLLGR+G L +A++F+  MP  
Sbjct: 369 VLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLM 428

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
            ++ VW  LL +CR+H + E+   AA  I +   +D P AY+ LSN  A+AG+W  V ++
Sbjct: 429 ADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDD-PAAYILLSNLHASAGQWKDVVKI 487

Query: 476 REKMKLRGVLKDTGCSWVGTES 497
           R+ MK R ++K+ GCSW+  E+
Sbjct: 488 RKSMKERNLIKEAGCSWIEVEN 509



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 174/345 (50%), Gaps = 24/345 (6%)

Query: 99  AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
           A ++FD++P+R L  +  MI  + + G   +++ L   +  SG  PD +T+S +L A T 
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACT- 67

Query: 159 CRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVK---GGKTSYARIVFDMMLEK 215
               + L   LG+ +H+++++  +  D  +  +LVD Y K    G    +R VF+ M E 
Sbjct: 68  ---ELGLLA-LGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEH 123

Query: 216 NVICSTSMISGFMSQGFVE-DAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALE 270
           NV+  T++I+ +   G  + +A E+F K +   I      ++++++    ++       +
Sbjct: 124 NVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACG-NLSDPYTGEQ 182

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           V+   +K        +G++L+ MYA+ G+++DAR+ FD + +KN+ ++ +++DGY KN  
Sbjct: 183 VYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLK 242

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
             +A  LF  + +  +  +  TF   LS     G + KG +I   +     +K   +   
Sbjct: 243 SEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL-----LKGGYKSNQ 297

Query: 391 C----MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           C    ++ +  R G++E A +   EM ++ N   W ++++    H
Sbjct: 298 CICNALISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITGFAKH 341



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 159/374 (42%), Gaps = 47/374 (12%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           S  S L+   N   P+ G +++++  K G+     +   L+ ++ + G ++ A + FD L
Sbjct: 163 SFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDIL 222

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
            ++ L +YN ++ GY KN + EE+  L  ++  +G     +TF+ +L  +    +     
Sbjct: 223 FEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGA----- 277

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
              G  +H ++LK   K++  +  AL+  Y + G    A  VF+ M ++NVI  TSMI+G
Sbjct: 278 MGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITG 337

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
           F   GF   A E+F K                   +ET  K  E+               
Sbjct: 338 FAKHGFATRALEMFHKM------------------LETGTKPNEI--------------T 365

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFT-----WTSMIDGYGKNGNPNQALELFCMM 341
             A++   +  G I + ++ F+ M +++        +  M+D  G++G   +A+E    M
Sbjct: 366 YVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 425

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGS 401
                   + T LGA    G+  L     E+    E D    P    Y  + +L   AG 
Sbjct: 426 PLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPD---DPAA--YILLSNLHASAGQ 480

Query: 402 LEQALKFVLEMPEK 415
            +  +K    M E+
Sbjct: 481 WKDVVKIRKSMKER 494



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 11/170 (6%)

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           A +VFD M ++N+ TWT MI  + + G    A++LF  M+     P+  T+   LSAC  
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA---GSLEQALKFVLEMPEKPNSD 419
            GL+  G+++   + R   +   +     +VD+  +    GS++ + K   +MPE  N  
Sbjct: 69  LGLLALGKQLHSRVIR-LGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEH-NVM 126

Query: 420 VWAALLSSCRLHDDVEMANIAANEIF--KLNANDRPGAYVALSNTLAAAG 467
            W A++++     + +   I   E+F   ++ + RP  + + S+ L A G
Sbjct: 127 SWTAIITAYAQSGECDKEAI---ELFCKMISGHIRPNHF-SFSSVLKACG 172


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  285 bits (730), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 159/434 (36%), Positives = 242/434 (55%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH +I + GV  +  +   L+ ++ KC  ++ A ++FD+     +     MI+GY+ 
Sbjct: 368 GKEIHCYIIRNGVSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVL 427

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG    +L + R L+    R +  T + +L A   C     L   LG+ +H  ILK    
Sbjct: 428 NGMNNNALEIFRWLLQERMRANSVTLASVLPA---CAGLAAL--TLGKELHGHILKNGHG 482

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               + +A++D Y K G+   A   F  + +K+ +C  SMI+     G  E+A ++FR+ 
Sbjct: 483 GSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQM 542

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
                + D V  +A +   + ++       E+H  +++  F  D+   SAL+DMY+KCG 
Sbjct: 543 GMAGTKYDCVSISAALSACA-NLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGN 601

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +D A RVFD M++KN  +W S+I  YG +G    +L LF  M    +QP++VTFL  +SA
Sbjct: 602 LDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISA 661

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           CGHAG VD+G   F  M  +  +  +MEHYACMVDL GRAG L +A   +  MP  P++ 
Sbjct: 662 CGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAG 721

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW  LL +CRLH +VE+A +A+  +F L+  +  G YV LSN  A AG+W+SV ++R  M
Sbjct: 722 VWGTLLGACRLHGNVELAEVASRNLFDLDPQN-SGYYVLLSNVHANAGQWESVLKIRSLM 780

Query: 480 KLRGVLKDTGCSWV 493
           K RGV K  GCSW+
Sbjct: 781 KERGVQKVPGCSWI 794



 Score =  175 bits (443), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 108/369 (29%), Positives = 199/369 (53%), Gaps = 12/369 (3%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G ++H  +  +G++ ++ ++  LL ++ KCG L  A ++FD +P+  L  +N MI+GY+
Sbjct: 266 FGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYV 325

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +NG ++E+  L  +++S+  +PD  TFS  L   +       L +  G+ +H  I++  V
Sbjct: 326 QNGFMDEASCLFHEMISARMKPDSITFSSFLPLLS---EGATLRQ--GKEIHCYIIRNGV 380

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             D  L +AL+D Y K      AR +FD     +++  T+MISG++  G   +A EIFR 
Sbjct: 381 SLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRW 440

Query: 243 TVEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
            +++ +   N++     +       AL    E+H  ++KN       +GSA++DMYAKCG
Sbjct: 441 LLQERMRA-NSVTLASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCG 499

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           ++D A + F  +  K+   W SMI    +NG P +A++LF  M     + + V+   ALS
Sbjct: 500 RLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALS 559

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC +   +  G+EI   M R  + +  +   + ++D+  + G+L+ A + V +  E+ N 
Sbjct: 560 ACANLPALHYGKEIHAFMMRG-AFRSDLFAESALIDMYSKCGNLDLACR-VFDTMEEKNE 617

Query: 419 DVWAALLSS 427
             W +++++
Sbjct: 618 VSWNSIIAA 626



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 187/369 (50%), Gaps = 12/369 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H  I   G + +  +   L+  + + G +  A  +FD +P +    +N M+ GY+K
Sbjct: 166 GRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVK 225

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  + +  +  ++  +   P+  TF+ +L   + C S + +  N G  +H  ++   ++
Sbjct: 226 NGDWDNATGVFMEMRRTETNPNSVTFACVL---SVCASEIMI--NFGSQLHGLVVSSGLE 280

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +   L+  Y K G    AR +FDMM + +++    MISG++  GF+++A  +F + 
Sbjct: 281 MDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEM 340

Query: 244 V----EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           +    + D + +++ +   S    T R+  E+HC +I+N    DV L SAL+D+Y KC  
Sbjct: 341 ISARMKPDSITFSSFLPLLSEG-ATLRQGKEIHCYIIRNGVSLDVFLKSALIDIYFKCRD 399

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ++ AR++FD     ++   T+MI GY  NG  N ALE+F  + +  ++ N VT    L A
Sbjct: 400 VEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPA 459

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C     +  G+E+   + ++          A M D+  + G L+ A +  + + +K ++ 
Sbjct: 460 CAGLAALTLGKELHGHILKNGHGGSCYVGSAIM-DMYAKCGRLDLAHQTFIGISDK-DAV 517

Query: 420 VWAALLSSC 428
            W ++++SC
Sbjct: 518 CWNSMITSC 526



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 138/504 (27%), Positives = 230/504 (45%), Gaps = 30/504 (5%)

Query: 3   NLSRIRSSVFSSTHNR----HYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINS 58
           NLS I      ST  +    H   V   +     + N DSL     A  L S LQ   + 
Sbjct: 5   NLSSIYKCFLPSTTFKLKSFHTNSVNIGKPLQFSIHNDDSL-----APQLVSILQTCTDP 59

Query: 59  DTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMI 118
                G + HA +   G+  N  +  KLL +++ CGA   A  +F +L       +N+MI
Sbjct: 60  SGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMI 119

Query: 119 AGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
            G+   GQ + +L    K++  G  PD YTF  ++KA     S       LGR+VH +I 
Sbjct: 120 RGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVA-----LGRVVHDKIQ 174

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
               + D  + ++L+  Y + G    AR +FD M  K+ +    M++G++  G  ++A  
Sbjct: 175 FMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATG 234

Query: 239 IF---RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
           +F   R+T      V  A +     S        ++H  ++ +    D  + + L+ MYA
Sbjct: 235 VFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYA 294

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KCG + DARR+FD M + ++ TW  MI GY +NG  ++A  LF  M    ++P+ +TF  
Sbjct: 295 KCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSS 354

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            L        + +G+EI   + R+  +   +   + ++D+  +   +E A K + +    
Sbjct: 355 FLPLLSEGATLRQGKEIHCYIIRN-GVSLDVFLKSALIDIYFKCRDVEMARK-IFDQRTP 412

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA-YVALSNTLAAAGKWDSVTE 474
            +  V  A++S   L+      N  A EIF+    +R  A  V L++ L A     ++T 
Sbjct: 413 VDIVVCTAMISGYVLNG----MNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTL 468

Query: 475 LREKMKLRG-VLKD--TGCSWVGT 495
            +E   L G +LK+   G  +VG+
Sbjct: 469 GKE---LHGHILKNGHGGSCYVGS 489



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 60/110 (54%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
            S+ +AL    N     YG +IHA + +   + +      L+ ++ KCG L  A ++FD 
Sbjct: 552 VSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDT 611

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           + ++   ++N +IA Y  +G++++SL+L   ++  G +PD  TF  I+ A
Sbjct: 612 MEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISA 661


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  285 bits (729), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 143/442 (32%), Positives = 268/442 (60%), Gaps = 15/442 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKC---GALKYAGQMFDELPQRTLSAYNYMIAG 120
           G ++H+ + + G+  +  +   L+ ++ KC   G++  + ++F+++P+  + ++  +I  
Sbjct: 70  GKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITA 129

Query: 121 YLKNGQVE-ESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           Y ++G+ + E++ L  K++S   RP+ ++FS +LKA      N+  P   G  V++  +K
Sbjct: 130 YAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC----GNLSDPYT-GEQVYSYAVK 184

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
             + + + +  +L+  Y + G+   AR  FD++ EKN++   +++ G+      E+A  +
Sbjct: 185 LGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLL 244

Query: 240 FRKTVEKDIVV----YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
           F +  +  I +    + +++ G + SI    K  ++H +L+K  +  +  + +AL+ MY+
Sbjct: 245 FNEIADTGIGISAFTFASLLSG-AASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYS 303

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           +CG I+ A +VF+ M+ +NV +WTSMI G+ K+G   +ALE+F  M E   +PN +T++ 
Sbjct: 304 RCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVA 363

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            LSAC H G++ +G++ F SM +++ + P+MEHYACMVDLLGR+G L +A++F+  MP  
Sbjct: 364 VLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLM 423

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
            ++ VW  LL +CR+H + E+   AA  I +   +D P AY+ LSN  A+AG+W  V ++
Sbjct: 424 ADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDD-PAAYILLSNLHASAGQWKDVVKI 482

Query: 476 REKMKLRGVLKDTGCSWVGTES 497
           R+ MK R ++K+ GCSW+  E+
Sbjct: 483 RKSMKERNLIKEAGCSWIEVEN 504



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 174/345 (50%), Gaps = 24/345 (6%)

Query: 99  AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
           A ++FD++P+R L  +  MI  + + G   +++ L   +  SG  PD +T+S +L A T 
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACT- 62

Query: 159 CRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVK---GGKTSYARIVFDMMLEK 215
               + L   LG+ +H+++++  +  D  +  +LVD Y K    G    +R VF+ M E 
Sbjct: 63  ---ELGLLA-LGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEH 118

Query: 216 NVICSTSMISGFMSQGFVE-DAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALE 270
           NV+  T++I+ +   G  + +A E+F K +   I      ++++++    ++       +
Sbjct: 119 NVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACG-NLSDPYTGEQ 177

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           V+   +K        +G++L+ MYA+ G+++DAR+ FD + +KN+ ++ +++DGY KN  
Sbjct: 178 VYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLK 237

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
             +A  LF  + +  +  +  TF   LS     G + KG +I   +     +K   +   
Sbjct: 238 SEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRL-----LKGGYKSNQ 292

Query: 391 C----MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           C    ++ +  R G++E A +   EM ++ N   W ++++    H
Sbjct: 293 CICNALISMYSRCGNIEAAFQVFNEMEDR-NVISWTSMITGFAKH 336



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 89/374 (23%), Positives = 159/374 (42%), Gaps = 47/374 (12%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           S  S L+   N   P+ G +++++  K G+     +   L+ ++ + G ++ A + FD L
Sbjct: 158 SFSSVLKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDIL 217

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
            ++ L +YN ++ GY KN + EE+  L  ++  +G     +TF+ +L  +    +     
Sbjct: 218 FEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGA----- 272

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
              G  +H ++LK   K++  +  AL+  Y + G    A  VF+ M ++NVI  TSMI+G
Sbjct: 273 MGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITG 332

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
           F   GF   A E+F K                   +ET  K  E+               
Sbjct: 333 FAKHGFATRALEMFHKM------------------LETGTKPNEI--------------T 360

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFT-----WTSMIDGYGKNGNPNQALELFCMM 341
             A++   +  G I + ++ F+ M +++        +  M+D  G++G   +A+E    M
Sbjct: 361 YVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSM 420

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGS 401
                   + T LGA    G+  L     E+    E D    P    Y  + +L   AG 
Sbjct: 421 PLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPD---DPAA--YILLSNLHASAGQ 475

Query: 402 LEQALKFVLEMPEK 415
            +  +K    M E+
Sbjct: 476 WKDVVKIRKSMKER 489



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/170 (27%), Positives = 84/170 (49%), Gaps = 11/170 (6%)

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           A +VFD M ++N+ TWT MI  + + G    A++LF  M+     P+  T+   LSAC  
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA---GSLEQALKFVLEMPEKPNSD 419
            GL+  G+++   + R   +   +     +VD+  +    GS++ + K   +MPE  N  
Sbjct: 64  LGLLALGKQLHSRVIR-LGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEH-NVM 121

Query: 420 VWAALLSSCRLHDDVEMANIAANEIF--KLNANDRPGAYVALSNTLAAAG 467
            W A++++     + +   I   E+F   ++ + RP  + + S+ L A G
Sbjct: 122 SWTAIITAYAQSGECDKEAI---ELFCKMISGHIRPNHF-SFSSVLKACG 167


>gi|224137958|ref|XP_002322694.1| predicted protein [Populus trichocarpa]
 gi|222867324|gb|EEF04455.1| predicted protein [Populus trichocarpa]
          Length = 586

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 151/448 (33%), Positives = 259/448 (57%), Gaps = 13/448 (2%)

Query: 52  LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL 111
           L   +N      G ++HAH+ KT   P   +S +L+IL+ KC  L  A  +FDE+ +R +
Sbjct: 17  LNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEMRERNV 76

Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR 171
            ++  MI+GY + G   E+L L  +++ S   P+ +TF+ +L + T           LGR
Sbjct: 77  VSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGF-----ELGR 131

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
            +H+ I K + +    + ++L+D Y K G+   AR VF+ + E++V+  T++ISG+   G
Sbjct: 132 QIHSHIFKRNYENHIFVGSSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQLG 191

Query: 232 FVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG 287
             E+A E+F    R+ +  + V Y +++   S  +       +VH  +++      V L 
Sbjct: 192 LDEEALELFCRLQREGMSSNYVTYASLLTALS-GLAALDHGKQVHSHVLRCELPFYVVLQ 250

Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM-QECCV 346
           ++L+DMY+KCG ++ AR++F++M  + V +W +M+ GY K+G   + ++LF +M +E  V
Sbjct: 251 NSLIDMYSKCGNLNYARKIFNNMPVRTVISWNAMLVGYSKHGKGIEVVKLFKLMREENKV 310

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIF-ESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
           +P+ VTFL  LS C H GL DKG E+F E M     ++  +EHY C++DLLGRAG +E+A
Sbjct: 311 KPDSVTFLAVLSGCSHGGLEDKGLEMFDEMMNGGDEIEAGIEHYGCVIDLLGRAGRVEEA 370

Query: 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465
            + + +MP +P + +W +LL +CR+H +  +       + ++   +  G YV LSN  A+
Sbjct: 371 FELIKKMPFEPTAAIWGSLLGACRVHSNTNIGEFVGCRLLEIEPEN-AGNYVILSNLYAS 429

Query: 466 AGKWDSVTELREKMKLRGVLKDTGCSWV 493
           AG+W+ V  +RE M  + V+K+ G SW+
Sbjct: 430 AGRWEDVRNVRELMMEKAVIKEPGRSWI 457



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 64/217 (29%), Positives = 105/217 (48%), Gaps = 10/217 (4%)

Query: 251 YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM 310
           YN M+    ++    R+   VH  +IK  +   V L + L+ +Y KC  +  AR VFD M
Sbjct: 13  YN-MLLNECVNKRAVREGQRVHAHMIKTCYLPPVYLSTRLIILYTKCECLGCARHVFDEM 71

Query: 311 QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR 370
           +++NV +WT+MI GY + G  ++AL LF  M     +PN  TF   LS+C      + GR
Sbjct: 72  RERNVVSWTAMISGYSQRGFASEALHLFVQMLRSDTEPNEFTFATVLSSCTGFSGFELGR 131

Query: 371 EIFESM-ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCR 429
           +I   + +R+Y     +   + ++D+  +AG + +A      +PE+      A +    +
Sbjct: 132 QIHSHIFKRNYENHIFVG--SSLLDMYAKAGRIHEARGVFECLPERDVVSCTAIISGYAQ 189

Query: 430 LHDDVEMANIAANEIF-KLNANDRPGAYVALSNTLAA 465
           L  D E     A E+F +L        YV  ++ L A
Sbjct: 190 LGLDEE-----ALELFCRLQREGMSSNYVTYASLLTA 221


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 167/458 (36%), Positives = 256/458 (55%), Gaps = 15/458 (3%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           A+ LPS L+    S +  Y  ++H++I + GV  +  +   L+ ++ K G ++ A + F 
Sbjct: 383 ASFLPSVLK----SGSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQ 438

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP 164
           +     ++    MI+GY+ NG   E+L+L R L+  G  P+  T + +L A   C +   
Sbjct: 439 QNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPA---CAALAS 495

Query: 165 LPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
           L   LG+ +H  ILK  ++    + +++   Y K G+   A   F  M  K+ +C   MI
Sbjct: 496 L--KLGKELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMI 553

Query: 225 SGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVF 280
             F   G  E A ++FR+      + D V  +A +   + +        E+HC +++N F
Sbjct: 554 VSFSQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACA-NYPALYYGKELHCFVVRNSF 612

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             D  + S L+DMY+KCGK+  AR VFD M  KN  +W S+I  YG +G P + L+LF  
Sbjct: 613 ISDTFVASTLIDMYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHE 672

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           M E  +QP++VTFL  +SACGHAGLVD+G   F  M  +Y +  +MEH+ACMVDL GRAG
Sbjct: 673 MVEAGIQPDHVTFLVIMSACGHAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAG 732

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
            L +A   +  MP  P++  W +LL +CRLH +VE+A +A+  + +L+ N+  G YV LS
Sbjct: 733 RLHEAFDTIKSMPFTPDAGTWGSLLGACRLHGNVELAKLASKHLVELDPNN-SGYYVLLS 791

Query: 461 NTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498
           N  A AG+W+SV ++R  MK +GV K  G SW+    G
Sbjct: 792 NVHAGAGEWESVLKVRSLMKEKGVQKIPGYSWIDVNGG 829



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 177/370 (47%), Gaps = 14/370 (3%)

Query: 45  ATSLPSALQHYINSDTPFYG---LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQ 101
           A  L S  + + NSD         +IHA +   G+  +  +  ++L +++ C + K  G 
Sbjct: 73  AAQLESMFRAFPNSDASLVKQQVRQIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGN 132

Query: 102 MFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161
           +F  L       +N++I G+   G  + +L    +++ S   PD YTF  ++KA     +
Sbjct: 133 LFCRLQLCYSLPWNWLIRGFSMLGCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGL-N 191

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
           NVPL +    MVH          D  + ++L+  Y   G    A+ +FD +  ++ I   
Sbjct: 192 NVPLCK----MVHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWN 247

Query: 222 SMISGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIK 277
            M++G++  G    A    +E+    V+ + V +  ++     +    R  +++H  +I+
Sbjct: 248 VMLNGYVKNGDFNSALGTFQEMRNSCVKPNSVSFVCLLS-VCATRGIVRAGIQLHGLVIR 306

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
           + F  D  + + ++ MY+KCG + DAR++FD M Q +  TW  +I GY +NG  ++A+ L
Sbjct: 307 SGFESDPTVANTIITMYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVAL 366

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
           F  M    V+ + +TF   L +   +G +   +E+   + R + +   +   + +VD+  
Sbjct: 367 FKAMVTSGVKLDSITFASFLPSVLKSGSLKYCKEVHSYIVR-HGVPFDVYLKSALVDIYF 425

Query: 398 RAGSLEQALK 407
           + G +E A K
Sbjct: 426 KGGDVEMACK 435



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/277 (25%), Positives = 127/277 (45%), Gaps = 21/277 (7%)

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYV-----KGGKTSYARIVFDMMLEK 215
           S+  L +   R +HA++L C +     L + ++  YV     K     + R+     L  
Sbjct: 86  SDASLVKQQVRQIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPW 145

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQL 275
           N      +I GF   G  + A   F + +  + V  +     Y I        + + C++
Sbjct: 146 N-----WLIRGFSMLGCFDFALMFFFRMLGSN-VAPDKYTFPYVIKACGGLNNVPL-CKM 198

Query: 276 IKNV-----FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           +  +     F  D+ +GS+L+ +Y   G I DA+ +FD +  ++   W  M++GY KNG+
Sbjct: 199 VHELARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGD 258

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD-YSMKPKMEHY 389
            N AL  F  M+  CV+PN V+F+  LS C   G+V  G ++   + R  +   P + + 
Sbjct: 259 FNSALGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVAN- 317

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
             ++ +  + G+L  A K    MP+  ++  W  L++
Sbjct: 318 -TIITMYSKCGNLFDARKIFDIMPQT-DTVTWNGLIA 352


>gi|125544034|gb|EAY90173.1| hypothetical protein OsI_11738 [Oryza sativa Indica Group]
          Length = 408

 Score =  285 bits (729), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 136/275 (49%), Positives = 184/275 (66%), Gaps = 42/275 (15%)

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV 271
           M  + V+ ST++I G M++G  EDAEEIF    EKD+VVYNAM+EGYS + ETA  ++EV
Sbjct: 1   MPVRTVVSSTALIVGCMNEGLYEDAEEIFNTMDEKDVVVYNAMVEGYSKTEETAESSMEV 60

Query: 272 -----------------------------------HCQLIKNVFFEDVKLGSALVDMYAK 296
                                              HCQ+IK+    D+K GSAL+DMY+K
Sbjct: 61  FKSMHRARFRPTVSTFVSVLGACSLLSSPEIGEQVHCQVIKSSLSSDIKAGSALLDMYSK 120

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM-------QECCVQPN 349
           CG++DD RR+FD M ++NV TWTSMIDGYGKNG  ++AL+LF  M        +  ++PN
Sbjct: 121 CGRVDDGRRIFDRMAERNVITWTSMIDGYGKNGLSDEALQLFEQMLRRRRRRHDDAIRPN 180

Query: 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFV 409
           + TFL ALSAC  AGL+ +G+E+F+SMER+++++P+MEHYACMVDLLGR GS+ +A  F+
Sbjct: 181 HATFLSALSACARAGLLSRGQEVFQSMEREHALRPRMEHYACMVDLLGRFGSVRRAHDFI 240

Query: 410 LEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
             +P +PNSDVWAALL +  LH DV+MAN+AA E+
Sbjct: 241 RGIPARPNSDVWAALLGAATLHGDVDMANVAAREL 275



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 136/305 (44%), Gaps = 43/305 (14%)

Query: 83  SIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV-EESLSLVRKLVSSG 141
           S  L++  +  G  + A ++F+ + ++ +  YN M+ GY K  +  E S+ + + +  + 
Sbjct: 9   STALIVGCMNEGLYEDAEEIFNTMDEKDVVVYNAMVEGYSKTEETAESSMEVFKSMHRAR 68

Query: 142 ERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK 201
            RP   TF  +L A  C   + P    +G  VH Q++K  + +D    +AL+D Y K G+
Sbjct: 69  FRPTVSTFVSVLGA--CSLLSSP---EIGEQVHCQVIKSSLSSDIKAGSALLDMYSKCGR 123

Query: 202 TSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS 261
               R +FD M E+NVI  TSMI G+   G  ++A ++F + + +    ++  I     +
Sbjct: 124 VDDGRRIFDRMAERNVITWTSMIDGYGKNGLSDEALQLFEQMLRRRRRRHDDAIRPNHAT 183

Query: 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT---- 317
             +A  A                          A+ G +   + VF  M++++       
Sbjct: 184 FLSALSAC-------------------------ARAGLLSRGQEVFQSMEREHALRPRME 218

Query: 318 -WTSMIDGYGKNGNPNQALELFCMMQECCVQPN---YVTFLGALSACGHAGLVD-KGREI 372
            +  M+D  G+ G+  +A +    ++    +PN   +   LGA +  G   + +   RE+
Sbjct: 219 HYACMVDLLGRFGSVRRAHDF---IRGIPARPNSDVWAALLGAATLHGDVDMANVAAREL 275

Query: 373 FESME 377
            +S +
Sbjct: 276 SDSAQ 280



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 54/111 (48%), Gaps = 9/111 (8%)

Query: 60  TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIA 119
           +P  G ++H  + K+ +  +      LL ++ KCG +    ++FD + +R +  +  MI 
Sbjct: 88  SPEIGEQVHCQVIKSSLSSDIKAGSALLDMYSKCGRVDDGRRIFDRMAERNVITWTSMID 147

Query: 120 GYLKNGQVEESLSLVRKLVSSGE-------RPDGYTFSMILKASTCCRSNV 163
           GY KNG  +E+L L  +++           RP+  TF   L A  C R+ +
Sbjct: 148 GYGKNGLSDEALQLFEQMLRRRRRRHDDAIRPNHATFLSALSA--CARAGL 196


>gi|225432688|ref|XP_002282622.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Vitis vinifera]
          Length = 684

 Score =  285 bits (728), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 170/496 (34%), Positives = 261/496 (52%), Gaps = 36/496 (7%)

Query: 6   RIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGL 65
           R  S++F  ++ R  ++ P + TFP   +   SL +PL                    G 
Sbjct: 88  RFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLV-------------------GK 128

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++HA   K G   +  +      ++ K G  + A +MFDE+P+R ++ +N  ++  +  G
Sbjct: 129 QVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEG 188

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           + +++L+   +    G  P+  TF   L A   C     L   LGR +H  +L+   +AD
Sbjct: 189 RYDDALTAFIEFRHEGWEPNLITFCAFLNA---CAGASYL--RLGRQLHGFVLQSGFEAD 243

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             +   L+D Y K  +   + I+F  + + N +   SMI  ++     E A  +F +  +
Sbjct: 244 VSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLVFLRARK 303

Query: 246 KDIVVYNAMIEGYSISIETARKALEV----HCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
           + I   + M+    +S       LEV    H   +K     ++ +GSALVDMY KCG I+
Sbjct: 304 EGIEPTDFMVSSV-LSACAGLSVLEVGKSVHTLAVKACVVGNIFVGSALVDMYGKCGSIE 362

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC----VQPNYVTFLGAL 357
           DA R FD M ++N+ TW +MI GY   G  + A+ LF  M   C    V PNYVTF+  L
Sbjct: 363 DAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLFDEMT--CGSHRVAPNYVTFVCVL 420

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           SAC  AG V+ G EIFESM   Y ++P  EHYAC+VDLLGRAG +EQA +F+ +MP +P 
Sbjct: 421 SACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACVVDLLGRAGMVEQAYQFIKKMPIRPT 480

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
             VW ALL + ++    E+  +AA+ +F+L+  D  G +V LSN  AAAG+W+  T +R+
Sbjct: 481 VSVWGALLGASKMFGKSELGKVAADNLFELDPLD-SGNHVLLSNMFAAAGRWEEATLVRK 539

Query: 478 KMKLRGVLKDTGCSWV 493
           +MK  G+ K  GCSW+
Sbjct: 540 EMKDVGIKKGAGCSWI 555



 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 112/448 (25%), Positives = 205/448 (45%), Gaps = 17/448 (3%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKP-NTNISIKLLILHLKCGALKYAGQ 101
           L+  SL S ++  +++     G   HA I KT   P  + I   L+ ++ K      A  
Sbjct: 4   LSPNSLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQL 63

Query: 102 MFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161
           +    P R++  +  +IAG ++NG+   +L     +     +P+ +TF    KAS   RS
Sbjct: 64  LLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRS 123

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
             PL   +G+ VHA  +K    +D  +  +  D Y K G T  AR +FD M E+N+    
Sbjct: 124 --PL---VGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWN 178

Query: 222 SMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIK 277
           + +S  + +G  +DA   F     +  E +++ + A +   +      R   ++H  +++
Sbjct: 179 AYLSNSVLEGRYDDALTAFIEFRHEGWEPNLITFCAFLNACA-GASYLRLGRQLHGFVLQ 237

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
           + F  DV + + L+D Y KC ++  +  +F  + + N  +W SMI  Y +N    +A  +
Sbjct: 238 SGFEADVSVANGLIDFYGKCHQVGCSEIIFSGISKPNDVSWCSMIVSYVQNDEEEKACLV 297

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
           F   ++  ++P        LSAC    +++ G+ +  ++     +   +   + +VD+ G
Sbjct: 298 FLRARKEGIEPTDFMVSSVLSACAGLSVLEVGKSV-HTLAVKACVVGNIFVGSALVDMYG 356

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457
           + GS+E A +   EMPE+ N   W A++         +MA    +E+   +    P  YV
Sbjct: 357 KCGSIEDAERAFDEMPER-NLVTWNAMIGGYAHQGQADMAVTLFDEMTCGSHRVAPN-YV 414

Query: 458 ALSNTLAAAGKWDSVT---ELREKMKLR 482
                L+A  +  SV    E+ E M+ R
Sbjct: 415 TFVCVLSACSRAGSVNVGMEIFESMRGR 442


>gi|357480897|ref|XP_003610734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512069|gb|AES93692.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 726

 Score =  285 bits (728), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 160/482 (33%), Positives = 259/482 (53%), Gaps = 42/482 (8%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           S PS L+         +GL+IH   +K G   +  I   L+ ++  C  +  A  +FD++
Sbjct: 123 SFPSLLKAVSKVSAFNHGLEIHGLASKLGFVDDPFIQTGLIAMYASCRRIMDARLLFDKM 182

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
                 A+N +I GY +NG  +++L L   + SS  +PD      +L A   C     L 
Sbjct: 183 CHPDAVAWNMIIDGYCQNGHYDDALRLFEDMRSSDMKPDSVILCTVLSA---CGHAGNL- 238

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
            + GR +H  +       D  L TAL++ Y   G    AR ++D +  K++I ST+M+SG
Sbjct: 239 -SYGRTIHEFVKDNGYAIDSHLQTALINMYANCGAMDLARKIYDGLSSKHLIVSTAMLSG 297

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE---------------- 270
           +   G V+DA  IF + +E+D+V ++AMI GY+ S +  ++AL+                
Sbjct: 298 YAKLGMVKDARFIFDQMIERDLVCWSAMISGYAES-DQPQEALKLFDEMLQKRSVPDQIT 356

Query: 271 -------------------VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311
                              +H  + ++ F   + + +AL+DMYAKCG +  AR VF++M 
Sbjct: 357 MLSVISACSHVGALAQANWIHTYVDRSGFGRALSVNNALIDMYAKCGNLVKAREVFENMP 416

Query: 312 QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371
           +KNV +W+SMI+ +  +GN + A++LF  M+E  ++PN VTF+G L ACGHAGLV++G +
Sbjct: 417 RKNVISWSSMINAFAMHGNADSAIKLFRRMKEVNIEPNGVTFIGVLYACGHAGLVEEGEK 476

Query: 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           +F SM  ++ + P  EHY CMVDL  RA  L +A++ +  MP  PN  +W +L+S+C++H
Sbjct: 477 LFSSMINEHGISPTREHYGCMVDLYCRANFLRKAIELIETMPFAPNVIIWGSLMSACQVH 536

Query: 432 DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
            + E+   AA  + +L   D  GA V LSN  A   +W+ V  +R+ M  +G+ K+   S
Sbjct: 537 GEAELGEFAAKRLLELEP-DHDGALVVLSNIYAKEKRWNDVGLIRKSMSYKGISKEKASS 595

Query: 492 WV 493
            +
Sbjct: 596 RI 597


>gi|297842209|ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334827|gb|EFH65245.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 717

 Score =  285 bits (728), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 152/438 (34%), Positives = 254/438 (57%), Gaps = 19/438 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H++  K+G+  +  +   L  ++ KCG+L+ +  +F E+P +  + +  MI+G+ +
Sbjct: 291 GKQVHSYTLKSGLILDLTVGSSLFTMYSKCGSLEESYSLFQEIPFKDNACWASMISGFNE 350

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G + E++ L  +++  G  PD  T + +L   T C S   LPR+  + +H   L+  + 
Sbjct: 351 YGYLREAIGLFSEMLDEGTSPDESTLAAVL---TVCSSLPSLPRS--KEIHGYTLRAGID 405

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               L +ALV++Y K G    AR V+D + E + +  +S+ISG+   G V+D   +FR  
Sbjct: 406 RGMPLGSALVNTYSKCGSLKLARKVYDRLPEMDPVSCSSLISGYSQHGLVQDGFLLFR-- 463

Query: 244 VEKDIVVYNAMIEGYSISI--------ETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
              D+V+    ++ Y+IS         E +    +VH  + K     +  +GS+L+ MY+
Sbjct: 464 ---DMVMSGFSMDSYAISSILKAAVLSEESELGAQVHAYITKIGLCTEPSVGSSLLTMYS 520

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           K G I+D  + F  +   ++  WT++I  Y ++G  N+AL+++C+M+E   +P+ VTF+G
Sbjct: 521 KFGSIEDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYCLMKEKGFKPDKVTFVG 580

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            LSAC H GLV++G     SM +DY ++P+  HY CMVD LGR+G L +A  F+   P K
Sbjct: 581 VLSACSHGGLVEEGYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAENFINTRPIK 640

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
           P++ VW  LL++C+++ DVE+  +AA +  +L  +D  GAYV+LSN LA  G+WD V E 
Sbjct: 641 PDALVWGTLLAACKIYGDVELGKLAAKKAIELEPSD-AGAYVSLSNILAEVGEWDEVEET 699

Query: 476 REKMKLRGVLKDTGCSWV 493
           R+ MK  GV K+ G S V
Sbjct: 700 RKLMKGTGVQKEPGWSSV 717



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/341 (26%), Positives = 167/341 (48%), Gaps = 33/341 (9%)

Query: 99  AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
           A ++F +     +  +N +IAG L+N        L  ++ +  ++PD YT+S +L A   
Sbjct: 26  AYKVFRDTLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCNGFQKPDSYTYSSVLAA--- 82

Query: 159 CRSNVPLPRNLGRMVHAQILKCDVKADDVLY-TALVDSYVKGGKTSYARIVFDMMLEKNV 217
           C S   L    G++V A+++KC   A+DV   T++VD Y K G  + AR VF  +   +V
Sbjct: 83  CASLEEL--RFGKVVQARVIKCG--AEDVFVCTSIVDLYAKCGHMAEAREVFSRISNPSV 138

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETAR-----KALEVH 272
           +  T M+SG+        A EIFR+     + + +  +   S+     R     +A +VH
Sbjct: 139 VSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVT--SVISACGRPSMVCEASQVH 196

Query: 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVF---DHMQQKNVFTWTSMIDGYGKNG 329
             + K+ F+ D  + +AL+ M +K G I+ + RVF   D ++++N+     M+  + +N 
Sbjct: 197 AWVFKSGFYLDTSVAAALISMNSKSGDINLSERVFEDLDDIRRQNIV--NVMVTSFSQNK 254

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP----K 385
            P +A+ LF  M +  + P+  +    LS      L   G+++       Y++K      
Sbjct: 255 KPGKAIRLFTRMLQEGLNPDEFSVCSLLSVLDCLNL---GKQV-----HSYTLKSGLILD 306

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           +   + +  +  + GSLE++     E+P K N+  WA+++S
Sbjct: 307 LTVGSSLFTMYSKCGSLEESYSLFQEIPFKDNA-CWASMIS 346



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 143/278 (51%), Gaps = 14/278 (5%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ-RTLSAYNYMIAGYLKN 124
           ++HA + K+G   +T+++  L+ ++ K G +  + ++F++L   R  +  N M+  + +N
Sbjct: 194 QVHAWVFKSGFYLDTSVAAALISMNSKSGDINLSERVFEDLDDIRRQNIVNVMVTSFSQN 253

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
            +  +++ L  +++  G  PD ++   +L    C         NLG+ VH+  LK  +  
Sbjct: 254 KKPGKAIRLFTRMLQEGLNPDEFSVCSLLSVLDCL--------NLGKQVHSYTLKSGLIL 305

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
           D  + ++L   Y K G    +  +F  +  K+  C  SMISGF   G++ +A  +F + +
Sbjct: 306 DLTVGSSLFTMYSKCGSLEESYSLFQEIPFKDNACWASMISGFNEYGYLREAIGLFSEML 365

Query: 245 EK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           ++    D     A++   S S+ +  ++ E+H   ++      + LGSALV+ Y+KCG +
Sbjct: 366 DEGTSPDESTLAAVLTVCS-SLPSLPRSKEIHGYTLRAGIDRGMPLGSALVNTYSKCGSL 424

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
             AR+V+D + + +  + +S+I GY ++G       LF
Sbjct: 425 KLARKVYDRLPEMDPVSCSSLISGYSQHGLVQDGFLLF 462



 Score = 99.4 bits (246), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/359 (21%), Positives = 164/359 (45%), Gaps = 20/359 (5%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G  + A + K G + +  +   ++ L+ KCG +  A ++F  +   ++ ++  M++GY 
Sbjct: 91  FGKVVQARVIKCGAE-DVFVCTSIVDLYAKCGHMAEAREVFSRISNPSVVSWTVMLSGYT 149

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           K+     +L + R++  SG   +  T + ++ A  C R ++    +    VHA + K   
Sbjct: 150 KSNDAFSALEIFREMRHSGVEINSCTVTSVISA--CGRPSMVCEAS---QVHAWVFKSGF 204

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVF---DMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
             D  +  AL+    K G  + +  VF   D +  +N++    M++ F        A  +
Sbjct: 205 YLDTSVAAALISMNSKSGDINLSERVFEDLDDIRRQNIV--NVMVTSFSQNKKPGKAIRL 262

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           F + +++ +      +      ++      +VH   +K+    D+ +GS+L  MY+KCG 
Sbjct: 263 FTRMLQEGLNPDEFSVCSLLSVLDCLNLGKQVHSYTLKSGLILDLTVGSSLFTMYSKCGS 322

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ++++  +F  +  K+   W SMI G+ + G   +A+ LF  M +    P+  T    L+ 
Sbjct: 323 LEESYSLFQEIPFKDNACWASMISGFNEYGYLREAIGLFSEMLDEGTSPDESTLAAVLTV 382

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEH----YACMVDLLGRAGSLEQALKFVLEMPE 414
           C     + + +EI       Y+++  ++      + +V+   + GSL+ A K    +PE
Sbjct: 383 CSSLPSLPRSKEI-----HGYTLRAGIDRGMPLGSALVNTYSKCGSLKLARKVYDRLPE 436



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 59/191 (30%), Positives = 102/191 (53%), Gaps = 6/191 (3%)

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ---GFVEDA-EEIFR 241
           +V+ ++L+D++ K  +   A  VF   L  NV C  ++I+G +     G V D   E+  
Sbjct: 7   EVVQSSLIDAFSKNLRFEDAYKVFRDTLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCN 66

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
              + D   Y++++   + S+E  R    V  ++IK    EDV + +++VD+YAKCG + 
Sbjct: 67  GFQKPDSYTYSSVLAACA-SLEELRFGKVVQARVIK-CGAEDVFVCTSIVDLYAKCGHMA 124

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           +AR VF  +   +V +WT M+ GY K+ +   ALE+F  M+   V+ N  T    +SACG
Sbjct: 125 EAREVFSRISNPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISACG 184

Query: 362 HAGLVDKGREI 372
              +V +  ++
Sbjct: 185 RPSMVCEASQV 195



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/111 (27%), Positives = 60/111 (54%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           ++ S L+  + S+    G ++HA+ITK G+    ++   LL ++ K G+++   + F ++
Sbjct: 476 AISSILKAAVLSEESELGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIEDCCKAFSQI 535

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
               L A+  +IA Y ++G+  E+L +   +   G +PD  TF  +L A +
Sbjct: 536 NGPDLIAWTALIASYAQHGKANEALQVYCLMKEKGFKPDKVTFVGVLSACS 586


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  285 bits (728), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 161/432 (37%), Positives = 248/432 (57%), Gaps = 11/432 (2%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IH +I + GV  +  ++  L+ L+ KC     A +MF+   +  +  Y  MI+GY+ NG
Sbjct: 233 EIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNG 292

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             +++L + R L+     P+  TFS IL A   C     +   LGR +H  I+K +++  
Sbjct: 293 MNKDALEIFRWLLQKKMIPNALTFSSILPA---CAGLAAI--KLGRELHGYIIKNELEEK 347

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT-- 243
             + +A+++ Y K G+   A ++F  +  K+ IC  S+I+ F   G  E+A  +FR+   
Sbjct: 348 CPVGSAIMNMYAKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGM 407

Query: 244 --VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
             V+ D V  +A +   + +I       E+H  +IK  F  D+   SAL++MYAKCGK++
Sbjct: 408 EGVKYDCVTVSAALSACA-NIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLN 466

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            AR VF+ MQ+KN   W S+I  YG +G    +L LF  M E  +QP+++TFL  LS+CG
Sbjct: 467 IARLVFNLMQEKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTILSSCG 526

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
           HAG V+ G   F  M  +Y +  +MEHYACM DL GRAG L++A + +  MP  P + VW
Sbjct: 527 HAGQVEDGVRYFRCMTEEYGIPAQMEHYACMADLFGRAGHLDEAFEVITSMPFPPAASVW 586

Query: 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
             LL +CR+H +VE+A +A+  +  L   +  G Y+ L++ LA AGKW SV +++  MK 
Sbjct: 587 GTLLGACRVHGNVELAEVASRYLLDLEPKNS-GYYLLLTHVLADAGKWRSVHKIQHLMKE 645

Query: 482 RGVLKDTGCSWV 493
           RGV K  GCSW+
Sbjct: 646 RGVQKVPGCSWI 657



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 101/373 (27%), Positives = 199/373 (53%), Gaps = 12/373 (3%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           YG ++H  + ++G+     +   L+ ++ K   L  A ++FD +PQ  L  +N MI GY+
Sbjct: 129 YGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVWNRMIGGYV 188

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +NG ++++  L  +++S+G +PD  TF+  L +     S   +     + +H  I++  V
Sbjct: 189 QNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQI-----KEIHGYIVRHGV 243

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             D  L +AL+D Y K      A  +F++  + +++  T+MISG++  G  +DA EIFR 
Sbjct: 244 ILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALEIFRW 303

Query: 243 TVEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
            ++K ++     +++++   +  +   +   E+H  +IKN   E   +GSA+++MYAKCG
Sbjct: 304 LLQKKMIPNALTFSSILPACA-GLAAIKLGRELHGYIIKNELEEKCPVGSAIMNMYAKCG 362

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           ++D A  +F  +  K+   W S+I  + ++G P +A+ LF  M    V+ + VT   ALS
Sbjct: 363 RLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVSAALS 422

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC +   +  G+EI   M +  + +  +   + ++++  + G L  A + V  + ++ N 
Sbjct: 423 ACANIPALHYGKEIHGFMIKG-AFESDLFDMSALINMYAKCGKLNIA-RLVFNLMQEKNE 480

Query: 419 DVWAALLSSCRLH 431
             W +++++   H
Sbjct: 481 VAWNSIIAAYGYH 493



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 101/414 (24%), Positives = 199/414 (48%), Gaps = 39/414 (9%)

Query: 22  LVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTN 81
           + P   TFPP ++    L+N                      G  I   I + G   +  
Sbjct: 6   VFPDKYTFPPVIKCCTGLNNVRL-------------------GKVIQDMILEMGFDLDMF 46

Query: 82  ISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG 141
           ++  L+ L+   G ++ A + FD++  +    +N MI GY++ G+ + ++ L + ++SS 
Sbjct: 47  VASSLIKLYADNGCIEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSE 106

Query: 142 ERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK 201
            +PD  TF+ +L  S C  + V      GR +H  +++  +    ++   LV  Y KG +
Sbjct: 107 AKPDSVTFACVLSIS-CSEAMV----EYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQ 161

Query: 202 TSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEG 257
              AR +FDMM + +++    MI G++  GF++DA  +F +     ++ D + + + +  
Sbjct: 162 LGDARKLFDMMPQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPS 221

Query: 258 YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT 317
            + S  + ++  E+H  ++++    DV L SAL+D+Y KC     A ++F+   + ++  
Sbjct: 222 LAES-SSLKQIKEIHGYIVRHGVILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVI 280

Query: 318 WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377
           +T+MI GY  NG    ALE+F  + +  + PN +TF   L AC     +  GRE+     
Sbjct: 281 YTAMISGYVLNGMNKDALEIFRWLLQKKMIPNALTFSSILPACAGLAAIKLGREL----- 335

Query: 378 RDYSMKPKMEHY----ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
             Y +K ++E      + ++++  + G L+ A   +       ++  W ++++S
Sbjct: 336 HGYIIKNELEEKCPVGSAIMNMYAKCGRLDLA-HLIFGRISIKDAICWNSIITS 388



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 123/248 (49%), Gaps = 14/248 (5%)

Query: 137 LVSSGERPDGYTFSMILKASTCCR--SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVD 194
           ++  G  PD YTF  ++K   CC   +NV     LG+++   IL+     D  + ++L+ 
Sbjct: 1   MLGCGVFPDKYTFPPVIK---CCTGLNNV----RLGKVIQDMILEMGFDLDMFVASSLIK 53

Query: 195 SYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV----EKDIVV 250
            Y   G    AR  FD M++K+ +    MI+G++  G  + A ++F+  +    + D V 
Sbjct: 54  LYADNGCIEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVT 113

Query: 251 YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM 310
           + A +   S S        ++H  ++++       +G+ LV +Y+K  ++ DAR++FD M
Sbjct: 114 F-ACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMM 172

Query: 311 QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR 370
            Q ++  W  MI GY +NG  + A  LF  M    ++P+ +TF   L +   +  + + +
Sbjct: 173 PQIDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIK 232

Query: 371 EIFESMER 378
           EI   + R
Sbjct: 233 EIHGYIVR 240



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 95/207 (45%), Gaps = 4/207 (1%)

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           D+ + S+L+ +YA  G I+DARR FD M  K+   W  MI+GY + G  + A++LF  M 
Sbjct: 44  DMFVASSLIKLYADNGCIEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMM 103

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD-YSMKPKMEHYACMVDLLGRAGS 401
               +P+ VTF   LS      +V+ GR++   + R      P + +   +V +  +   
Sbjct: 104 SSEAKPDSVTFACVLSISCSEAMVEYGRQLHGLVVRSGLDFVPLVGN--TLVTVYSKGRQ 161

Query: 402 LEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSN 461
           L  A K    MP+  +  VW  ++     +  ++ A++  NE+           + +   
Sbjct: 162 LGDARKLFDMMPQ-IDLVVWNRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLP 220

Query: 462 TLAAAGKWDSVTELREKMKLRGVLKDT 488
           +LA +     + E+   +   GV+ D 
Sbjct: 221 SLAESSSLKQIKEIHGYIVRHGVILDV 247



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 58/113 (51%), Gaps = 2/113 (1%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
            ++ +AL    N     YG +IH  + K   + +      L+ ++ KCG L  A  +F+ 
Sbjct: 415 VTVSAALSACANIPALHYGKEIHGFMIKGAFESDLFDMSALINMYAKCGKLNIARLVFNL 474

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
           + ++   A+N +IA Y  +G + +SL+L   ++  G +PD  TF  IL  S+C
Sbjct: 475 MQEKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTIL--SSC 525


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  285 bits (728), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 154/454 (33%), Positives = 268/454 (59%), Gaps = 11/454 (2%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           ++  AL+  +  +    G  +H    K     +  + I LL L+ K G +  A ++F+E+
Sbjct: 239 TISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEM 298

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P+  L  ++ MIA Y ++ + +E+L L  ++  +   P+ +TF+ +L+A   C S+V L 
Sbjct: 299 PKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQA---CASSVSL- 354

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
            +LG+ +H+ +LK  + ++  +  A++D Y K G+   +  +F+ + ++N +   ++I G
Sbjct: 355 -DLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVG 413

Query: 227 FMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
           ++  G  E A  +F   +E D+    V Y++++   S S+      L++H   IK ++ +
Sbjct: 414 YVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRA-SASLAALEPGLQIHSLTIKTMYNK 472

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           D  + ++L+DMYAKCG+I+DAR  FD M +++  +W +MI GY  +G   +AL LF MMQ
Sbjct: 473 DTVVANSLIDMYAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQ 532

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
               +PN +TF+G LSAC +AGL+ KG+  FESM +DY +KP +EHY CMV LLGR G  
Sbjct: 533 HTDCKPNKLTFVGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRF 592

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
           ++A+K + E+  +P+  VW ALL +C +H  V++  + A  + ++  +D    +V LSN 
Sbjct: 593 DEAMKLIGEIAYQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHD-DATHVLLSNM 651

Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
            A AG+WD+V  +R+ M+ + V K+ G SWV  +
Sbjct: 652 YATAGRWDNVAFVRKYMQKKKVRKEPGLSWVENQ 685



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 193/389 (49%), Gaps = 11/389 (2%)

Query: 41  NPLTATSLPSALQHYI-NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYA 99
           + L + S    LQ  I N   P  G  +H HI K G   +      LL  +++  +L+ A
Sbjct: 30  SALDSHSYAHMLQQIIRNGADPIAGKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDA 89

Query: 100 GQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCC 159
            ++FDE+PQ    ++  +  GY ++ Q  ++L  + ++   G   + + F+ +LK     
Sbjct: 90  SKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRIFKEGHEVNPFVFTTLLKLLV-- 147

Query: 160 RSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVIC 219
             ++ L  +L   +HA + K    AD  + TAL+D+Y   G    AR VFD +  K+++ 
Sbjct: 148 --SMDLA-HLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNVDVARHVFDDICCKDMVS 204

Query: 220 STSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY---SISIETARKALEVHCQLI 276
            T M++ +    F E++ ++F +         N  I G     + +E       VH   +
Sbjct: 205 WTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSCLGLEAFNVGKSVHGCAL 264

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           K  +  D+ +G AL+++YAK G+I DA+R+F+ M + ++  W+ MI  Y ++    +AL+
Sbjct: 265 KGCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPWSLMIARYAQSDRSKEALD 324

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           LF  M++  V PN  TF   L AC  +  +D G++I   + + + +   +     ++D+ 
Sbjct: 325 LFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLK-FGLNSNVFVSNAIMDVY 383

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALL 425
            + G +E ++K   E+P++ N   W  ++
Sbjct: 384 AKCGEIENSMKLFEELPDR-NDVTWNTII 411



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/351 (23%), Positives = 151/351 (43%), Gaps = 40/351 (11%)

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           G+ +H  ILK     D      L++ YV+      A  +FD M + N I   ++  G+  
Sbjct: 54  GKHLHCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSR 113

Query: 230 QGFVEDAEE----IFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
                 A      IF++  E +  V+  +++   +S++ A     +H  + K     D  
Sbjct: 114 DHQFHQALHFILRIFKEGHEVNPFVFTTLLK-LLVSMDLAHLCWTLHACVYKLGHHADAF 172

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           +G+AL+D Y+  G +D AR VFD +  K++ +WT M+  Y +N    ++L+LF  M+   
Sbjct: 173 VGTALIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMG 232

Query: 346 VQPNYVTFLGALSA---------------CGHAGLVD--------------KGREIFESM 376
            +PN  T  GAL +               C   G  D              K  EI ++ 
Sbjct: 233 YKPNNFTISGALKSCLGLEAFNVGKSVHGCALKGCYDHDLFVGIALLELYAKSGEIIDA- 291

Query: 377 ERDYSMKPKME--HYACMVDLLGRAGSLEQALKFVLEMPEK---PNSDVWAALLSSCRLH 431
           +R +   PK +   ++ M+    ++   ++AL   L M +    PN+  +A++L +C   
Sbjct: 292 QRLFEEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASS 351

Query: 432 DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
             +++     + + K   N       A+ +  A  G+ ++  +L E++  R
Sbjct: 352 VSLDLGKQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDR 402


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 161/459 (35%), Positives = 255/459 (55%), Gaps = 18/459 (3%)

Query: 38  SLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALK 97
           SLS  LTA S   A++ Y+       G+++H    K G+  N  ++  +L ++ KCGAL 
Sbjct: 374 SLSGALTACS---AIKGYLE------GIQLHGLAVKCGLDFNICVANTILDMYAKCGALM 424

Query: 98  YAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
            A  +FD++  +   ++N +IA + +N  VEE+L+L   ++ S   PD YTF  ++KA  
Sbjct: 425 EACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKA-- 482

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
            C     L  N G  VH +++K  +  D  + +A++D Y K G    A  + + + E+  
Sbjct: 483 -CAGKKAL--NYGMEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHERLEERTT 539

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN---AMIEGYSISIETARKALEVHCQ 274
           +   S+ISGF S+   E+A   F + ++  ++  N   A +     ++ T     ++H Q
Sbjct: 540 VSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVELGKQIHGQ 599

Query: 275 LIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQA 334
           ++K     DV + S +VDMY+KCG + D+R +F+   +++  TW++MI  Y  +G    A
Sbjct: 600 ILKLQLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGEDA 659

Query: 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394
           ++LF  MQ   V+PN+  F+  L AC H G VDKG   F  M   Y + P+MEHY+CMVD
Sbjct: 660 IKLFEEMQLQNVKPNHTIFISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVD 719

Query: 395 LLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG 454
           LLGR+G + +AL+ +  MP + +  +W  LL  CRL  +VE+A  AAN + +L+  D   
Sbjct: 720 LLGRSGQVNEALELIESMPFEADDVIWRTLLGICRLQGNVEVAEKAANSLLQLDPQD-SS 778

Query: 455 AYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           AYV LSN  A AG W  V ++R  MK   + K+ GCSW+
Sbjct: 779 AYVLLSNVYAIAGMWGEVAKIRSFMKNYKLKKEPGCSWI 817



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 189/397 (47%), Gaps = 30/397 (7%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA+  KT    +  +    L ++ KC  +  A ++F+  P  T  ++N +I GY +
Sbjct: 290 GTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYAR 349

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
             QV E+L + R L  S    D  + S  L A +  +  +      G  +H   +KC + 
Sbjct: 350 QDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLE-----GIQLHGLAVKCGLD 404

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
            +  +   ++D Y K G    A ++FD M  K+ +   ++I+       VE+   +F   
Sbjct: 405 FNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSM 464

Query: 241 -RKTVEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVFFEDVKLGSALVDMYA 295
            R T+E D   + ++++  +      +KAL    EVH ++IK+    D  +GSA++DMY 
Sbjct: 465 LRSTMEPDDYTFGSVVKACA-----GKKALNYGMEVHGRVIKSGMGLDWFVGSAIIDMYC 519

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KCG + +A ++ + ++++   +W S+I G+        AL  F  M +  V P+  T+  
Sbjct: 520 KCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYAT 579

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            L  C +   V+ G++I   + +   +   +   + +VD+  + G+++ + + + E   K
Sbjct: 580 VLDICANLATVELGKQIHGQILK-LQLHSDVYIASTIVDMYSKCGNMQDS-RIMFEKAPK 637

Query: 416 PNSDVWAALL----------SSCRLHDDVEMANIAAN 442
            +   W+A++           + +L +++++ N+  N
Sbjct: 638 RDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPN 674



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 122/483 (25%), Positives = 215/483 (44%), Gaps = 53/483 (10%)

Query: 26  NQTFPPKLQNYDSLS--NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNIS 83
           +QT PP   +  S +  NP    +     Q   N      G + HA IT TG  P   +S
Sbjct: 17  SQTTPPYAIHSISSNQMNPTKKLTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVS 76

Query: 84  IKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY---------------------- 121
             LL  + KC  L YA  +FD++PQR + ++N MI GY                      
Sbjct: 77  NCLLQFYCKCLNLNYAFNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVV 136

Query: 122 ---------LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRM 172
                    L+NG   +S+ +  K+     + D  TF+++LKA T           LG  
Sbjct: 137 SWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIED-----YGLGLQ 191

Query: 173 VHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGF 232
           VH   ++    +D V  TALVD Y    K  +A  +F  M E+N +C +++I+G++    
Sbjct: 192 VHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDR 251

Query: 233 VEDAEEIFRKTVEKDIVVYNAMIEGYSIS---IETARKALEVHCQLIKNVFFEDVKLGSA 289
             +  ++++  +++ + V  A       S   +       ++H   +K  F  D  +G+A
Sbjct: 252 FTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTA 311

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349
            +DMYAKC ++ DAR+VF+        +  ++I GY +     +ALE+F  +Q+  +  +
Sbjct: 312 TLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFD 371

Query: 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC----MVDLLGRAGSLEQA 405
            ++  GAL+AC       +G ++        ++K  ++   C    ++D+  + G+L +A
Sbjct: 372 EISLSGALTACSAIKGYLEGIQL-----HGLAVKCGLDFNICVANTILDMYAKCGALMEA 426

Query: 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465
              + +  E  ++  W A++++   ++ VE     A  +  L +   P  Y   S   A 
Sbjct: 427 C-LIFDDMEIKDAVSWNAIIAAHEQNEHVE--ETLALFVSMLRSTMEPDDYTFGSVVKAC 483

Query: 466 AGK 468
           AGK
Sbjct: 484 AGK 486



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 181/372 (48%), Gaps = 22/372 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           GL++H    + G   +      L+ ++  C  L +A  +F E+P+R    ++ +IAGY++
Sbjct: 189 GLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVR 248

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N +  E L L + ++  G      TF+   ++     +       LG  +HA  LK +  
Sbjct: 249 NDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSA-----FELGTQLHAYALKTNFG 303

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D+++ TA +D Y K  +   AR VF+           ++I G+  Q  V +A EIFR +
Sbjct: 304 YDNIVGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFR-S 362

Query: 244 VEKDIVVYNAMIEGYSISIETARK----ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           ++K  + ++ +    +++  +A K     +++H   +K     ++ + + ++DMYAKCG 
Sbjct: 363 LQKSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDFNICVANTILDMYAKCGA 422

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           + +A  +FD M+ K+  +W ++I  + +N +  + L LF  M    ++P+  TF   + A
Sbjct: 423 LMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKA 482

Query: 360 CG-----HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
           C      + G+   GR I   M  D+ +       + ++D+  + G L +A K + E  E
Sbjct: 483 CAGKKALNYGMEVHGRVIKSGMGLDWFVG------SAIIDMYCKCGMLVEAEK-IHERLE 535

Query: 415 KPNSDVWAALLS 426
           +  +  W +++S
Sbjct: 536 ERTTVSWNSIIS 547


>gi|357464699|ref|XP_003602631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355491679|gb|AES72882.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 705

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 157/477 (32%), Positives = 271/477 (56%), Gaps = 47/477 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH  I K+    +  +   L+ ++ KC  +  A + FD++  R + ++N +I  Y +
Sbjct: 170 GVQIHGLIAKSRYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQ 229

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD-V 182
           NG   ++L +  ++++ G  PD  T + +  AS C  +++   R  G  +HA+++K D  
Sbjct: 230 NGPAGKALEVFVRMMNCGIEPDEITLASV--ASAC--ASLSAIRE-GLQIHARVMKHDKY 284

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           + D VL  ALVD Y K  + + AR+VFD M  ++V+  TSM+SG+     V+ A  +F  
Sbjct: 285 RNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRDVVSETSMVSGYAKASSVKAARLMFSN 344

Query: 243 TVEKDIVVYNAMIEGYSISIETA----------RKAL----------------------- 269
            +E+++V +NA+I GY+ + E            R+++                       
Sbjct: 345 MMERNVVSWNALIAGYTQNGENEEAVRLFLLLKRESIWPTHYTFGNLLNACANLADLKLG 404

Query: 270 -EVHCQLIKNVFF------EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
            + H  ++K+ F+       D+ +G++L+DMY KCG ++D R VF+ M +++  +W +MI
Sbjct: 405 RQAHTHILKHGFWFKSGEDSDIFVGNSLIDMYMKCGLVEDGRLVFERMLERDNVSWNAMI 464

Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382
            GY +NG   +ALE+F  M     +P++VT +G LSAC HAGLV++GR  F+SM  ++ +
Sbjct: 465 VGYAQNGYGTEALEIFREMLVSGERPDHVTMIGVLSACSHAGLVEEGRCYFQSMTIEHGL 524

Query: 383 KPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAAN 442
            P  +HY CMVDLLGRAG L++A   +  MP +P++ VW +LL++C++H ++ +    A 
Sbjct: 525 VPVKDHYTCMVDLLGRAGCLDEANNLIQTMPMEPDAVVWGSLLAACKVHGNITLGKYVAE 584

Query: 443 EIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
            + +++  +  G YV LSN  A  G+W  V  +R++M+  GV+K  GCSW+  +S L
Sbjct: 585 RLLEIDPLN-SGPYVLLSNMYAELGRWKDVVRVRKQMRQMGVIKQPGCSWISIQSHL 640



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 101/396 (25%), Positives = 178/396 (44%), Gaps = 73/396 (18%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L ++     L   + S + F    +HA I KT       I  +L+ ++ KCG L+ A ++
Sbjct: 17  LDSSPFAKLLDTCVKSKSVFEARLVHARIIKTQFSSEIFIQNRLVDVYGKCGFLEDARKV 76

Query: 103 FDEL-------------------------------PQRTLSAYNYMIAGYLKNGQVEESL 131
           FD +                               P+R   ++N M++G+ +  + EE+L
Sbjct: 77  FDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWNAMVSGFAQRDRFEEAL 136

Query: 132 SLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTA 191
             V  + S     + Y+F   L A   C   + L  ++G  +H  I K     D  + +A
Sbjct: 137 RFVVDMHSEDFVLNEYSFGSALSA---CAGLMDL--SIGVQIHGLIAKSRYSLDVYMGSA 191

Query: 192 LVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKD 247
           LVD Y K    + A+  FD M  +N++   S+I+ +   G    A E+F +     +E D
Sbjct: 192 LVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVFVRMMNCGIEPD 251

Query: 248 IVVYNAMIEGYSISIETARKALEVHCQLIK-NVFFEDVKLGSALVDMYAKCGKIDDARRV 306
            +   A +     S+   R+ L++H +++K + +  D+ LG+ALVDMYAKC ++++AR V
Sbjct: 252 EITL-ASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAKCRRVNEARLV 310

Query: 307 FD-------------------------------HMQQKNVFTWTSMIDGYGKNGNPNQAL 335
           FD                               +M ++NV +W ++I GY +NG   +A+
Sbjct: 311 FDRMPLRDVVSETSMVSGYAKASSVKAARLMFSNMMERNVVSWNALIAGYTQNGENEEAV 370

Query: 336 ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371
            LF +++   + P + TF   L+AC +   +  GR+
Sbjct: 371 RLFLLLKRESIWPTHYTFGNLLNACANLADLKLGRQ 406



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 86/315 (27%), Positives = 145/315 (46%), Gaps = 39/315 (12%)

Query: 133 LVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTAL 192
           LVRK+V      D   F+ +L   TC +S         R+VHA+I+K    ++  +   L
Sbjct: 6   LVRKVVGDLSFLDSSPFAKLL--DTCVKSKSVFE---ARLVHARIIKTQFSSEIFIQNRL 60

Query: 193 VDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN 252
           VD Y K G    AR VFD M ++N     +++      G +++A  +F+   E+D   +N
Sbjct: 61  VDVYGKCGFLEDARKVFDHMQQRNTFSWNAVLGALTKFGALDEALNLFKCMPERDQCSWN 120

Query: 253 AMIEGYS------------------------ISIETARKA----------LEVHCQLIKN 278
           AM+ G++                         S  +A  A          +++H  + K+
Sbjct: 121 AMVSGFAQRDRFEEALRFVVDMHSEDFVLNEYSFGSALSACAGLMDLSIGVQIHGLIAKS 180

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
            +  DV +GSALVDMY+KC  +  A+R FD M  +N+ +W S+I  Y +NG   +ALE+F
Sbjct: 181 RYSLDVYMGSALVDMYSKCRVVASAQRAFDDMDVRNIVSWNSLITCYEQNGPAGKALEVF 240

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398
             M  C ++P+ +T     SAC     + +G +I   + +    +  +     +VD+  +
Sbjct: 241 VRMMNCGIEPDEITLASVASACASLSAIREGLQIHARVMKHDKYRNDLVLGNALVDMYAK 300

Query: 399 AGSLEQALKFVLEMP 413
              + +A      MP
Sbjct: 301 CRRVNEARLVFDRMP 315


>gi|359476084|ref|XP_002282081.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Vitis vinifera]
          Length = 541

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 161/471 (34%), Positives = 265/471 (56%), Gaps = 45/471 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           KIHAHI K  +  ++ +  K++ +       +YA  +F  +       YN MI  Y  N 
Sbjct: 32  KIHAHIVKFSLSQSSFLVTKMVDVCNHHAETEYANLLFKRVADPNAFLYNAMIRAYKHNK 91

Query: 126 QVEESLSLVRKLV--SSGERP---DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
               ++++ ++++  S GE P   D +TF  ++K+         +  +LG+ VH  + K 
Sbjct: 92  VYVLAITVYKQMLGHSHGENPIFPDKFTFPFVVKSCAGL-----MCYDLGKQVHGHVFKF 146

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
             K++ V+  +LV+ YVK      A  VF+ M E++ +   ++ISG +  G +  A  IF
Sbjct: 147 GQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVRLGQMRRARAIF 206

Query: 241 RKTVEKDIVVYNAMIEGYSI------SIETARK------------------------ALE 270
            +  +K I  + A++ GY+       ++E  R+                        ALE
Sbjct: 207 EEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPACAQLGALE 266

Query: 271 ----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
               +H    K  F  ++ + +AL++MYAKCG ID+ RR+FD M +++V +W++MI G  
Sbjct: 267 LGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQMNERDVISWSTMIVGLA 326

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM 386
            +G  ++A+ELF  MQ+  ++PN +TF+G LSAC HAGL+++G   FESM+RDY+++P +
Sbjct: 327 NHGRAHEAIELFQEMQKAKIEPNIITFVGLLSACAHAGLLNEGLRYFESMKRDYNIEPGV 386

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446
           EHY C+V+LLG +G L+QAL+ + +MP KP+S +W +LLSSCR H ++E+A IA   + +
Sbjct: 387 EHYGCLVNLLGLSGRLDQALELIKKMPMKPDSAIWGSLLSSCRSHSNLEIAVIAMEHLLE 446

Query: 447 LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTES 497
           L   D  G YV LSN  A  GKWD V+ +R+ M+ + + K  GCS +  ++
Sbjct: 447 LEPAD-TGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCSSIEVDN 496



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 75/343 (21%), Positives = 143/343 (41%), Gaps = 85/343 (24%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H H+ K G K NT +   L+ +++KC +L  A ++F+E+ +R   ++N +I+G+++
Sbjct: 136 GKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHKVFEEMTERDAVSWNTLISGHVR 195

Query: 124 NGQVE-------------------------------ESLSLVRKLVSSGERPDGYTFSMI 152
            GQ+                                ++L   R++   G  PD  +   +
Sbjct: 196 LGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSV 255

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L A  C +        LG+ +H    K     +  +  AL++ Y K G     R +FD M
Sbjct: 256 LPA--CAQLG---ALELGKWIHFYADKAGFLRNICVCNALIEMYAKCGSIDEGRRLFDQM 310

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRK----TVEKDIVVYNAMIEGYSISIETARKA 268
            E++VI  ++MI G  + G   +A E+F++     +E +I+ +                 
Sbjct: 311 NERDVISWSTMIVGLANHGRAHEAIELFQEMQKAKIEPNIITF----------------- 353

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ-----QKNVFTWTSMID 323
                                L+   A  G +++  R F+ M+     +  V  +  +++
Sbjct: 354 -------------------VGLLSACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVN 394

Query: 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC-GHAGL 365
             G +G  +QALEL   M    ++P+   +   LS+C  H+ L
Sbjct: 395 LLGLSGRLDQALELIKKMP---MKPDSAIWGSLLSSCRSHSNL 434


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  284 bits (727), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 154/451 (34%), Positives = 254/451 (56%), Gaps = 10/451 (2%)

Query: 46   TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
            T+L S L  + N      G  +H    K         S  LL ++ KCG L  A ++F +
Sbjct: 572  TTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVK 631

Query: 106  LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
            +   T+ ++   IA Y++ G   +++ L  ++ S G RPD YT + I+ A  C  S    
Sbjct: 632  MGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSS---- 687

Query: 166  PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
              + GR VH+ ++K  + ++  +  AL++ Y K G    AR+VF  +  K+++   +MI 
Sbjct: 688  -LDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIG 746

Query: 226  GFMSQGFVEDAEEIF---RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
            G+       +A E+F   +K  + D +    ++   +  +    K  E+H  +++  +F 
Sbjct: 747  GYSQNSLPNEALELFLDMQKQFKPDDITMACVLPACA-GLAALDKGREIHGHILRRGYFS 805

Query: 283  DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
            D+ +  ALVDMYAKCG +  A+ +FD + +K++ +WT MI GYG +G  N+A+  F  M+
Sbjct: 806  DLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMR 865

Query: 343  ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
               ++P+  +F   L+AC H+GL+++G + F SM  +  ++PK+EHYAC+VDLL R G+L
Sbjct: 866  IAGIEPDESSFSVILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNL 925

Query: 403  EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
             +A KF+  MP KP++ +W  LLS CR+H DV++A   A  IF+L   D    YV L+N 
Sbjct: 926  SKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEP-DNTRYYVVLANV 984

Query: 463  LAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             A A KW+ V +LR++M+ RG  ++ GCSW+
Sbjct: 985  YAEAEKWEEVKKLRKRMQKRGFKQNPGCSWI 1015



 Score =  147 bits (372), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 188/382 (49%), Gaps = 11/382 (2%)

Query: 38  SLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALK 97
           S S  L   S  S LQ      +   G ++H+ I   G+  +  +  KL+ +++ CG L 
Sbjct: 362 SKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLV 421

Query: 98  YAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
              ++FD++    +  +N +++ Y K G   ES+SL +K+   G   + YTF+ +LK   
Sbjct: 422 QGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLK--- 478

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
            C + +   +   R VH  +LK    ++  +  +L+ +Y K G    A  +FD + E +V
Sbjct: 479 -CFAALGKVKECKR-VHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDV 536

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHC 273
           +   SMI+G +  GF  +  EIF +     VE D+    +++  ++ +I        +H 
Sbjct: 537 VSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWA-NIGNLSLGRALHG 595

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
             +K  F E+V   + L+DMY+KCG ++ A  VF  M    + +WTS I  Y + G  + 
Sbjct: 596 FGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSD 655

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMV 393
           A+ LF  MQ   V+P+  T    + AC  +  +DKGR++   + ++  M   +     ++
Sbjct: 656 AIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKN-GMGSNLPVTNALI 714

Query: 394 DLLGRAGSLEQALKFVLEMPEK 415
           ++  + GS+E+A     ++P K
Sbjct: 715 NMYAKCGSVEEARLVFSKIPVK 736



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 21/215 (9%)

Query: 224 ISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS--ISIETARKALE----VHCQLIK 277
           I+ F   G + +A E+  K+       Y   +  Y   + +   +K+LE    VH  +I 
Sbjct: 343 INKFCEMGDLRNAIELLTKSKS-----YELGLNSYCSVLQLCAEKKSLEDGKRVHSVIIS 397

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
           N    D  LG+ LV MY  CG +   R++FD +    VF W  ++  Y K GN  +++ L
Sbjct: 398 NGISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 457

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
           F  MQ+  V  N  TF   L      G V + + +       Y +K        +V+ L 
Sbjct: 458 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRV-----HGYVLKLGFGSNTAVVNSLI 512

Query: 398 RA----GSLEQALKFVLEMPEKPNSDVWAALLSSC 428
            A    G +E A     E+ E P+   W ++++ C
Sbjct: 513 AAYFKFGGVESAHNLFDELSE-PDVVSWNSMINGC 546


>gi|414885949|tpg|DAA61963.1| TPA: hypothetical protein ZEAMMB73_954210 [Zea mays]
          Length = 633

 Score =  284 bits (726), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 149/437 (34%), Positives = 256/437 (58%), Gaps = 12/437 (2%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           IHAH++++ +  +  +   L+ ++ KCGA+  A  +FD++P R + ++ Y+IAGY +N  
Sbjct: 82  IHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYM 141

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
             E++ L+  ++ +  RP+G+TF+ +LKA+  C        ++G  +HA  +K +   D 
Sbjct: 142 PAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGC-----SIGEQMHALAVKYNWDEDV 196

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEIFRK 242
            + +AL+D Y +  +   A +VFD ++ KN +   ++I+GF  +   E       E+ R 
Sbjct: 197 YVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRN 256

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
                   Y++M   ++  I    +   VH  LIK+       +G+ ++ MYAK G + D
Sbjct: 257 GFGATHFTYSSMFSAFA-RIGALEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVD 315

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           AR+VFD M ++++ TW +M+    + G   +A+  F  +++C +Q N +TFL  L+AC H
Sbjct: 316 ARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSH 375

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
            GLV +G+  F+ M +DY+++P+++HY   VDLLGRAG L++AL FV +MP +P + VW 
Sbjct: 376 GGLVKEGKHYFDMM-KDYNVQPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWG 434

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
           ALL +CR+H + +M   AA+ +F+L+ +D  G  V L N  A+ GKW+    +R+ MK  
Sbjct: 435 ALLGACRMHKNAKMGQYAADHVFELDPDD-TGPPVLLYNIYASTGKWNDAARVRKMMKAT 493

Query: 483 GVLKDTGCSWVGTESGL 499
           GV K+  CSWV  E+ +
Sbjct: 494 GVKKEPACSWVQIENSV 510



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/264 (25%), Positives = 126/264 (47%), Gaps = 11/264 (4%)

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
            R +HA + +  +  D  L  +L+  Y K G  S AR VFD M  ++V+  T +I+G+  
Sbjct: 79  ARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQ 138

Query: 230 QGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
                +A     ++ R     +   + ++++  + +        ++H   +K  + EDV 
Sbjct: 139 NYMPAEAIGLLPDMLRARFRPNGFTFTSLLKA-TGACGGCSIGEQMHALAVKYNWDEDVY 197

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           +GSAL+DMYA+C ++D A  VFD +  KN  +W ++I G+ +  +    L  F  MQ   
Sbjct: 198 VGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNG 257

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA--CMVDLLGRAGSLE 403
               + T+    SA    G +++GR +   + +      K+  +    M+ +  ++GS+ 
Sbjct: 258 FGATHFTYSSMFSAFARIGALEQGRWVHAHLIKS---GQKLTAFVGNTMLGMYAKSGSMV 314

Query: 404 QALKFVLEMPEKPNSDVWAALLSS 427
            A K V +  +K +   W  +L++
Sbjct: 315 DARK-VFDRMDKRDLVTWNTMLTA 337



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 57/226 (25%), Positives = 99/226 (43%), Gaps = 7/226 (3%)

Query: 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
           A  +H  L ++    D  L ++L+ MY KCG + DAR VFD M  ++V +WT +I GY +
Sbjct: 79  ARAIHAHLSRSCLAGDAFLLNSLIHMYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQ 138

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           N  P +A+ L   M     +PN  TF   L A G  G    G ++  ++   Y+    + 
Sbjct: 139 NYMPAEAIGLLPDMLRARFRPNGFTFTSLLKATGACGGCSIGEQM-HALAVKYNWDEDVY 197

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
             + ++D+  R   ++ A+  V +     N   W AL++      D E   +   E+ + 
Sbjct: 198 VGSALLDMYARCEQMDMAI-MVFDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRN 256

Query: 448 NANDRPGAYVALSNTLA-----AAGKWDSVTELREKMKLRGVLKDT 488
                   Y ++ +  A       G+W     ++   KL   + +T
Sbjct: 257 GFGATHFTYSSMFSAFARIGALEQGRWVHAHLIKSGQKLTAFVGNT 302



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 87/192 (45%), Gaps = 9/192 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA   K     +  +   LL ++ +C  +  A  +FD L  +   ++N +IAG+ +
Sbjct: 180 GEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFAR 239

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
               E +L    ++  +G     +T+S +  A     +        GR VHA ++K   K
Sbjct: 240 KADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGA-----LEQGRWVHAHLIKSGQK 294

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEI 239
               +   ++  Y K G    AR VFD M +++++   +M++     G  ++A    EEI
Sbjct: 295 LTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEI 354

Query: 240 FRKTVEKDIVVY 251
            +  ++ + + +
Sbjct: 355 RKCGIQLNQITF 366



 Score = 44.3 bits (103), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 51/257 (19%), Positives = 102/257 (39%), Gaps = 47/257 (18%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +HAH+ K+G K    +   +L ++ K G++  A ++FD + +R L  +N M+    +
Sbjct: 281 GRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQ 340

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G  +E+++                F  I K                         C ++
Sbjct: 341 YGLGKEAVA---------------HFEEIRK-------------------------CGIQ 360

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS----QGFVEDAE-E 238
            + + + +++ +   GG     +  FDMM + NV         F+      G +++A   
Sbjct: 361 LNQITFLSVLTACSHGGLVKEGKHYFDMMKDYNVQPEIDHYVSFVDLLGRAGLLKEALIF 420

Query: 239 IFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
           +F+  +E    V+ A++   +  +    K  +     +  +  +D      L ++YA  G
Sbjct: 421 VFKMPMEPTAAVWGALLG--ACRMHKNAKMGQYAADHVFELDPDDTGPPVLLYNIYASTG 478

Query: 299 KIDDARRVFDHMQQKNV 315
           K +DA RV   M+   V
Sbjct: 479 KWNDAARVRKMMKATGV 495


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  284 bits (726), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 156/433 (36%), Positives = 247/433 (57%), Gaps = 15/433 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H HI   G +P   +   LL +++K   L+ A  +FDE+P+R + ++  MI+ Y  
Sbjct: 74  GKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAY-S 132

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N   +++L  +  +   G RP+ +T+S +L+A         LP NL R +H  I+K  ++
Sbjct: 133 NKLNDKALKCLILMFREGVRPNMFTYSSVLRACD------GLP-NL-RQLHCGIIKTGLE 184

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +D  + +AL+D Y K      A  VFD M  ++++   S+I GF       +A  +F++ 
Sbjct: 185 SDVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRM 244

Query: 244 VEKDIVVYNAMIEGY---SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
                +   A +         +       +VH  ++K  F +D+ L +AL+DMY KCG +
Sbjct: 245 KRAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLILNNALIDMYCKCGSL 302

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           +DA   F  M +K+V +W++M+ G  +NG   QALELF  M+E   +PNY+T LG L AC
Sbjct: 303 EDANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFAC 362

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            HAGLV+KG   F SM++ + + P  EHY C++DLLGRAG L++A+K + EM  +P+S  
Sbjct: 363 SHAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVT 422

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W  LL +CR+H +V++A  AA +I +L   D  G Y+ LSN  A   +W+ V E+R+ M 
Sbjct: 423 WRTLLGACRVHRNVDLAIYAAKKIIELEPED-AGTYILLSNIYANTQRWEDVAEVRKTMT 481

Query: 481 LRGVLKDTGCSWV 493
            RG+ K  GCSW+
Sbjct: 482 NRGIRKTPGCSWI 494


>gi|224080943|ref|XP_002306238.1| predicted protein [Populus trichocarpa]
 gi|222855687|gb|EEE93234.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  284 bits (726), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 159/455 (34%), Positives = 256/455 (56%), Gaps = 12/455 (2%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           TA  L   L+H  N    +   +I+A I  +    N  +   LL+ + K G L  A ++F
Sbjct: 5   TAYHLSILLRHCANHSLIYQAKQINAQIVLSNYLSNVTLQTDLLLAYSKSGFLLEARKVF 64

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           D +P+R + ++N M++ Y +N    +++ +  + +  G RPD YT   + KA        
Sbjct: 65  DRMPERNMHSWNIMMSSYAQNYCYSDAICIFDEFLKMGFRPDHYTLPPLFKAVAGVGDCY 124

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
                LG ++H  +++   +   V+ ++++D Y+KGGK   A+ VF  ML ++      M
Sbjct: 125 -----LGFVLHGWVIRLGFEGYVVVGSSVLDFYLKGGKLVEAKRVFSNMLWRDCGVWNLM 179

Query: 224 ISGFMSQGFVEDAEEIFRKTVEK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
           ISGF   GF  +A  + R  VE+    D +V  +++       +   K  E+H +++K+ 
Sbjct: 180 ISGFGRAGFYVEALSLVRNMVEEEEKLDALVVPSILNACGGEGDLM-KGKEIHGRVVKST 238

Query: 280 FFE-DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
            F  DV + ++L+DMYA+CG ++D+ +VF +M+  NV TWT+MI  YG +G   ++LE+F
Sbjct: 239 LFNVDVVISNSLIDMYARCGCLNDSEKVFRNMRSLNVVTWTTMISCYGVHGRAEESLEVF 298

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398
             M+   ++PN VT    L++C H+GL+D+GR IF SM+  Y  +P +EHYACMVDLLGR
Sbjct: 299 KKMKGFGLKPNPVTLTAVLASCSHSGLIDEGRRIFYSMQSHYGFEPSVEHYACMVDLLGR 358

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVA 458
            G LE+AL  V  M  +  + VW ALL  C +H +V +  IAA+ +F+L  ++ PG Y+A
Sbjct: 359 FGYLEEALGLVQRMKLEATASVWGALLGGCVMHKNVNIGEIAAHCLFELEPSN-PGNYIA 417

Query: 459 LSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           L     + G  D +T  R KM+  G+ K  GCSW+
Sbjct: 418 LCYIYKSHGISDGITITRAKMRELGLAKTPGCSWI 452


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 156/466 (33%), Positives = 259/466 (55%), Gaps = 44/466 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HAHI  +G      IS +LL ++ KCG+L  A ++FDE+  R L ++N MI+GY+K
Sbjct: 138 GKQVHAHIKTSG-SIGLYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVK 196

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP------------------- 164
            G  E++ +L  K+      P+   FS     S C + N P                   
Sbjct: 197 GGNFEKARNLFDKM------PNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSN 250

Query: 165 -------------LPR-NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFD 210
                        +P  ++G+ +H  I++  + +D+V++ +L+D Y K G    AR +FD
Sbjct: 251 KCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEARYIFD 310

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEG-YSISIETARKAL 269
            M E++V+  T+MI  ++  G  E+   +FR  +  +I+  +    G  +   + A + L
Sbjct: 311 KMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDL 370

Query: 270 --EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
             ++H  +++  F       SALV MY+KCG I++A+ VF+ + Q ++F+WTS++ GY +
Sbjct: 371 GKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQ 430

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           +G  ++AL  F ++ +   +P+ + F+G LSAC HAGLVDKG E F S++  + +   ++
Sbjct: 431 HGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTID 490

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           HYAC++DLL RAG   +A   + EMP KP+  +WAALL  CR+H ++E+A  AA  +F++
Sbjct: 491 HYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEI 550

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
              + P  YV L+N  A+AG       +RE M  RG++K  G SW+
Sbjct: 551 EP-ENPATYVTLANIYASAGMRAEEANIRETMDSRGIVKKPGMSWI 595


>gi|224113417|ref|XP_002316490.1| predicted protein [Populus trichocarpa]
 gi|222865530|gb|EEF02661.1| predicted protein [Populus trichocarpa]
          Length = 492

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 153/449 (34%), Positives = 260/449 (57%), Gaps = 9/449 (2%)

Query: 48  LPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP 107
           L S LQ    +  P  G   H  + + G++ +T  S  L+ ++ KCG ++ A ++FDE+P
Sbjct: 1   LHSLLQFCAKNREPITGKACHGQVIRLGLETDTLTSNMLMNMYSKCGLIRRACKVFDEIP 60

Query: 108 QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR 167
           +R++ ++N MI   ++NG+ E+++ +  ++   G     +T S ++ A    + +V   R
Sbjct: 61  ERSMVSWNIMIGTCVQNGEEEKAIDIFLEMQREGSPCSEFTVSSVVCACAA-KGDVFFCR 119

Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
            L    HA  +K  V AD  + TAL+D Y K G    A  VF+ M E+N +  +S+++GF
Sbjct: 120 QL----HAFAIKAVVDADVFVGTALIDVYAKCGSIEDASCVFEGMPERNDVTWSSIVAGF 175

Query: 228 MSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY---SISIETARKALEVHCQLIKNVFFEDV 284
           +     E+   +F +  E  +     MI         +    +  +VH  + +  F  + 
Sbjct: 176 VQNELYEEGLVLFARGKEMGLENNQFMISSVIRACAGLAALIEGRQVHAIVCRTGFGPNN 235

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
            + SALVDMYAKCG I++A  +F ++++KNV  W ++I G+ K+   ++ + LF  MQ+ 
Sbjct: 236 FVASALVDMYAKCGSIEEAYVLFCNIEKKNVVLWNAIISGFAKHACSSEVMNLFEEMQQT 295

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQ 404
            +QP+ VT++  LSAC H GLVDKGR  F+ M R++++ P + HY+CMVD+LGR G + +
Sbjct: 296 GMQPDEVTYVAVLSACVHVGLVDKGRSYFDLMTREHNVSPNVLHYSCMVDILGRGGLVHE 355

Query: 405 ALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464
           A + + +MP    + +W +LL+SCR+H ++E+A IAA  +F++   DR G YV L+NT A
Sbjct: 356 AHELMTKMPFAATASMWGSLLASCRIHGNLELAEIAAKNLFEMEP-DRGGNYVLLANTYA 414

Query: 465 AAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           A+ KW+   + R+ +K   +LK+ G SW+
Sbjct: 415 ASKKWEEAAKARKSLKGSEILKERGKSWI 443


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 154/437 (35%), Positives = 249/437 (56%), Gaps = 15/437 (3%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G  +HA     G+  +  ++  L+ ++  CG+++ A ++FD +  R + ++  MI GY 
Sbjct: 277 WGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYA 336

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +NG +E++  L   +   G +PD  T+  I+ A   C  +  L  N  R +H+Q+     
Sbjct: 337 ENGNIEDAFGLFATMQEEGIQPDRITYMHIMNA---CAISANL--NHAREIHSQVDIAGF 391

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-- 240
             D ++ TALV  Y K G    AR VFD M  ++V+  ++MI  ++  G+  +A E F  
Sbjct: 392 GTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHL 451

Query: 241 --RKTVEKDIVVYNAMIE--GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
             R  +E D V Y  ++   G+  +++     +E++ Q IK      V LG+AL+ M AK
Sbjct: 452 MKRSNIEPDGVTYINLLNACGHLGALDVG---MEIYTQAIKADLVSHVPLGNALIIMNAK 508

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
            G ++ AR +FD M +++V TW +MI GY  +GN  +AL LF  M +   +PN VTF+G 
Sbjct: 509 HGSVERARYIFDTMVRRDVITWNAMIGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGV 568

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           LSAC  AG VD+GR  F  +     + P ++ Y CMVDLLGRAG L++A   +  MP KP
Sbjct: 569 LSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKP 628

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
            S +W++LL +CR+H ++++A  AA     ++  D    YV LS+  AAAG W++V ++R
Sbjct: 629 TSSIWSSLLVACRIHGNLDVAERAAERCLMIDPYD-GAVYVQLSHMYAAAGMWENVAKVR 687

Query: 477 EKMKLRGVLKDTGCSWV 493
           + M+ RG+ K+ GC+W+
Sbjct: 688 KVMESRGIRKEQGCTWI 704



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 135/474 (28%), Positives = 237/474 (50%), Gaps = 30/474 (6%)

Query: 26  NQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIK 85
           ++   P +  + S+   L A S P+ L          +G ++HA +   G   +  I   
Sbjct: 151 DEGLEPSIITFLSV---LDACSSPAGLN---------WGKEVHAQVVTAGFVSDFRIGTA 198

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           L+ +++K G++  A Q+FD L  R +S +N M+ GY K+G  E++  L  ++   G +P+
Sbjct: 199 LVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPN 258

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
             +F  IL     C +  P     G+ VHAQ +   +  D  + T+L+  Y   G    A
Sbjct: 259 KISFLSILDG---CWT--PEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGA 313

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSIS 261
           R VFD M  ++V+  T MI G+   G +EDA  +F     + ++ D + Y  ++   +IS
Sbjct: 314 RRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAIS 373

Query: 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
                 A E+H Q+    F  D+ + +ALV MYAKCG I DAR+VFD M +++V +W++M
Sbjct: 374 -ANLNHAREIHSQVDIAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRRDVVSWSAM 432

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF-ESMERDY 380
           I  Y +NG   +A E F +M+   ++P+ VT++  L+ACGH G +D G EI+ ++++ D 
Sbjct: 433 IGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLGALDVGMEIYTQAIKADL 492

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIA 440
                + +   ++ +  + GS+E+A +++ +   + +   W A++    LH +   A   
Sbjct: 493 VSHVPLGN--ALIIMNAKHGSVERA-RYIFDTMVRRDVITWNAMIGGYSLHGNAREALYL 549

Query: 441 ANEIFKLNANDRPGAYVALSNTLAAAGKWDS----VTELREKMKLRGVLKDTGC 490
            + + K         +V + +  + AG  D      T L E   +   +K  GC
Sbjct: 550 FDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRGIVPTVKLYGC 603



 Score =  188 bits (478), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 126/425 (29%), Positives = 213/425 (50%), Gaps = 23/425 (5%)

Query: 9   SSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIH 68
           S+ F ST  R    V  N      LQ      N + + +     Q          G ++ 
Sbjct: 28  SARFRSTFTRR---VGANDV----LQRLGEGGNHIDSRTYVKLFQRCTELRDAALGKQVR 80

Query: 69  AHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVE 128
            HI + G + N      L+ L+  CG +  A Q+FD +  +T+  +N +IAGY + G V+
Sbjct: 81  DHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVK 140

Query: 129 ESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVL 188
           E+ +L R++V  G  P   TF  +L A   C S  P   N G+ VHAQ++     +D  +
Sbjct: 141 EAFALFRQMVDEGLEPSIITFLSVLDA---CSS--PAGLNWGKEVHAQVVTAGFVSDFRI 195

Query: 189 YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----V 244
            TALV  YVKGG    AR VFD +  ++V     M+ G+   G  E A E+F +     +
Sbjct: 196 GTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGL 255

Query: 245 EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDAR 304
           + + + + ++++G   + E       VH Q +     +D+++ ++L+ MY  CG I+ AR
Sbjct: 256 KPNKISFLSILDG-CWTPEALAWGKAVHAQCMNAGLVDDIRVATSLIRMYTTCGSIEGAR 314

Query: 305 RVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG 364
           RVFD+M+ ++V +WT MI+GY +NGN   A  LF  MQE  +QP+ +T++  ++AC  + 
Sbjct: 315 RVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISA 374

Query: 365 LVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV--WA 422
            ++  REI   ++        +     +V +  + G+++ A +    MP +   DV  W+
Sbjct: 375 NLNHAREIHSQVD-IAGFGTDLLVSTALVHMYAKCGAIKDARQVFDAMPRR---DVVSWS 430

Query: 423 ALLSS 427
           A++ +
Sbjct: 431 AMIGA 435



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 161/343 (46%), Gaps = 45/343 (13%)

Query: 133 LVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTAL 192
           ++++L   G   D  T+  + +  T  R        LG+ V   I++   + +      L
Sbjct: 44  VLQRLGEGGNHIDSRTYVKLFQRCTELRDAA-----LGKQVRDHIIQGGRQLNIYELNTL 98

Query: 193 VDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV----EKDI 248
           +  Y   G  + AR +FD +  K V+   ++I+G+   G V++A  +FR+ V    E  I
Sbjct: 99  IKLYSICGNVTEARQIFDSVENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSI 158

Query: 249 VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFD 308
           + + ++++  S S        EVH Q++   F  D ++G+ALV MY K G +DDAR+VFD
Sbjct: 159 ITFLSVLDACS-SPAGLNWGKEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFD 217

Query: 309 HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG------- 361
            +  ++V T+  M+ GY K+G+  +A ELF  MQ+  ++PN ++FL  L  C        
Sbjct: 218 GLHIRDVSTFNVMVGGYAKSGDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAW 277

Query: 362 ---------HAGLVDKGREIFESMERDYSMKPKME---------------HYACMVDLLG 397
                    +AGLVD  R +  S+ R Y+    +E                +  M++   
Sbjct: 278 GKAVHAQCMNAGLVDDIR-VATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYA 336

Query: 398 RAGSLEQALKFVLEMPE---KPNSDVWAALLSSCRLHDDVEMA 437
             G++E A      M E   +P+   +  ++++C +  ++  A
Sbjct: 337 ENGNIEDAFGLFATMQEEGIQPDRITYMHIMNACAISANLNHA 379


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 163/499 (32%), Positives = 276/499 (55%), Gaps = 40/499 (8%)

Query: 10  SVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHA 69
           ++++ +  R  +L P   TFP  +++  SL +                      G +IH 
Sbjct: 70  ALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCA-------------------GKQIHQ 110

Query: 70  HITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEE 129
                G   +  ++  L+ ++ KCG L  A ++FDE+P+R + ++  MI+GY++N +  E
Sbjct: 111 QAFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERARE 170

Query: 130 SLSLVRKLVSSGERP-----------DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
           ++ L ++ +   E             D      ++  S C R  V   +++   VH   +
Sbjct: 171 AVFLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVI--SACARVCV---KSVTECVHGLAV 225

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
           K   +    +   L+D+Y K G+ S +R VFD M E +V    S+I+ +   G   +A  
Sbjct: 226 KKGFEGCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFS 285

Query: 239 IFRKTVEKDIVVYNAMIEGYSISIETARKALEV----HCQLIKNVFFEDVKLGSALVDMY 294
           +F   V++  V YNA+     +       AL++    H Q++K    +++ +G+++VDMY
Sbjct: 286 LFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLVVGTSIVDMY 345

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
            KCG+++ AR+ FD +++KNV +WT M+ GYG +G+  +A+++F  M  C ++PNY+TF+
Sbjct: 346 CKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFV 405

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             L+AC HAGL+ +G   F  M+ ++ ++P +EHY+CMVDLLGRAG L++A   + EM  
Sbjct: 406 SVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAYGLIQEMKV 465

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
           KP+  VW +LL +CR+H +VE+  I+A ++FKL+ ++  G YV LSN  A AG+WD V  
Sbjct: 466 KPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSN-CGYYVLLSNIYADAGRWDDVER 524

Query: 475 LREKMKLRGVLKDTGCSWV 493
           +R  MK  G+LK  G S V
Sbjct: 525 MRILMKNHGLLKTPGYSIV 543



 Score = 48.1 bits (113), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 28/118 (23%), Positives = 60/118 (50%), Gaps = 2/118 (1%)

Query: 309 HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDK 368
           ++ + +V++W S+I  + ++G+  QAL  F  M++  + PN  TF   + +C     +  
Sbjct: 45  YVDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCA 104

Query: 369 GREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           G++I +     +     +   + ++D+  + G L  A K   E+PE+ N   W +++S
Sbjct: 105 GKQIHQQ-AFVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPER-NVVSWTSMIS 160


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 150/434 (34%), Positives = 256/434 (58%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH +  + G     NIS  L  ++ KCG+++ A  +FD + Q+T+ ++N M+ GY++
Sbjct: 267 GKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQ 326

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG+ E+++++  K++  G  P G T   I++A   C     L R  G+ VH  + + ++ 
Sbjct: 327 NGEPEKAIAVFEKMLEEGIDPTGVT---IMEALHACADLGDLER--GKFVHKFVDQLNLG 381

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +D  +  +L+  Y K  +   A  +F+ +  +  +   +MI G+   G V +A   F + 
Sbjct: 382 SDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEM 441

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               ++ D     ++I   +  +   R A  +H  +I++   +++ + +ALVDMY+KCG 
Sbjct: 442 KSLGMKPDSFTMVSVIPALA-ELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGA 500

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I  AR++FD +  ++V TW +MIDGYG +G    AL+LF  M++  V+PN +T+L  +SA
Sbjct: 501 IHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISA 560

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H+GLVD+G   F+SM++DY ++P M+HY  MVDLLGRAG +++A  F+  MP  P   
Sbjct: 561 CSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGIT 620

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           V+ A+L +C++H ++E+   AA ++F+LN  D  G +V L+N  A+  KW  V E+R+ M
Sbjct: 621 VYGAMLGACKIHKNIEVGEKAAKKLFELNP-DEGGYHVLLANIYASTSKWSKVAEVRKTM 679

Query: 480 KLRGVLKDTGCSWV 493
           + +G+ K  GCS V
Sbjct: 680 EKKGLKKTPGCSVV 693



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 164/313 (52%), Gaps = 12/313 (3%)

Query: 71  ITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEES 130
           + K G+        KL+ L  K G++  A ++F+ +  +  + Y+ M+ GY KN  +E +
Sbjct: 72  VIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETA 131

Query: 131 LSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT 190
           L+ + ++     +P  Y F+ +LK    C  N  L R  G+ +H Q++     A+    T
Sbjct: 132 LAFLCRMRYDDVKPVVYNFTYLLKV---CGDNADLKR--GKEIHGQLITNSFAANVFAMT 186

Query: 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK---- 246
            +V+ Y K  +   A  +FD M E++++   ++I+GF   GF + A E+  +  ++    
Sbjct: 187 GVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRP 246

Query: 247 -DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARR 305
             I +   +     + +    K+  +H   I+  F + V + +AL DMY+KCG ++ AR 
Sbjct: 247 DSITLVTVLPAAADVGLLMVGKS--IHGYAIRAGFAKLVNISTALADMYSKCGSVETARL 304

Query: 306 VFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365
           +FD M QK V +W SM+DGY +NG P +A+ +F  M E  + P  VT + AL AC   G 
Sbjct: 305 IFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGD 364

Query: 366 VDKGREIFESMER 378
           +++G+ + + +++
Sbjct: 365 LERGKFVHKFVDQ 377



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 180/378 (47%), Gaps = 24/378 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH  +       N      ++ ++ KC  +  A +MFD +P+R L ++N +IAG+ +
Sbjct: 166 GKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQ 225

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  +++L LV ++   G+RPD  T   +L A+    ++V L   +G+ +H   ++    
Sbjct: 226 NGFAKKALELVLRMQDEGQRPDSITLVTVLPAA----ADVGLLM-VGKSIHGYAIRAGFA 280

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               + TAL D Y K G    AR++FD M +K V+   SM+ G++  G  E A  +F K 
Sbjct: 281 KLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKM 340

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE----------DVKLGSALVDM 293
           +E+        I+   ++I  A  A      L +  F            D+ + ++L+ M
Sbjct: 341 LEEG-------IDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISM 393

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           Y+KC ++D A  +F+++  +   +W +MI GY +NG  ++AL  F  M+   ++P+  T 
Sbjct: 394 YSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTM 453

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           +  + A     +    + I   + R   +   +     +VD+  + G++  A K + +M 
Sbjct: 454 VSVIPALAELSVTRHAKWIHGLIIRS-CLDKNIFVTTALVDMYSKCGAIHMARK-LFDMI 511

Query: 414 EKPNSDVWAALLSSCRLH 431
              +   W A++     H
Sbjct: 512 SDRHVITWNAMIDGYGTH 529



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 116/243 (47%), Gaps = 44/243 (18%)

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS--ISIETA------------- 265
           T ++S F   G + +A  +F    +K   +Y+ M++GY+   S+ETA             
Sbjct: 85  TKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVK 144

Query: 266 -------------------RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRV 306
                              ++  E+H QLI N F  +V   + +V+MYAKC +IDDA ++
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKM 204

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           FD M ++++ +W ++I G+ +NG   +ALEL   MQ+   +P+ +T +  L A    GL+
Sbjct: 205 FDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLL 264

Query: 367 DKGREIFESMERDYSMKPKMEHY----ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
             G+ I       Y+++            + D+  + GS+E A + + +  ++     W 
Sbjct: 265 MVGKSI-----HGYAIRAGFAKLVNISTALADMYSKCGSVETA-RLIFDGMDQKTVVSWN 318

Query: 423 ALL 425
           +++
Sbjct: 319 SMM 321


>gi|357142905|ref|XP_003572732.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Brachypodium distachyon]
          Length = 669

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 159/442 (35%), Positives = 263/442 (59%), Gaps = 21/442 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIK-LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G ++H    ++G+ P+   S   LL ++  C     A + FDE+P         M +GY+
Sbjct: 108 GRQLHLLAIRSGLFPSDPFSASALLHMYNHCSRPIDARKAFDEIPSPNPVIITAMASGYV 167

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR-NLGRMVHAQILKCD 181
           +N  V  SL+L RKL++SG        + ++  S   R    +P   +   +HA ++K  
Sbjct: 168 RNNLVYPSLALFRKLIASGSATAVDEAAALVAFSASAR----IPDCGITSSLHALVVKTG 223

Query: 182 VKADDVLYTALVDSYVKGGKTSY--ARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
           +  D  +   ++D+Y KGG+     AR VFD M EK+V+   SMI+ +   G   DA  +
Sbjct: 224 LDGDAGVVNTMLDAYAKGGRRDLGAARKVFDTM-EKDVVSWNSMIALYAQNGMSADALGL 282

Query: 240 FRK------TVEKDIVVYNAMIEG--YSISIETARKALEVHCQLIKNVFFEDVKLGSALV 291
           +RK      +++ + V  +A++    ++ +I+T +    +H Q+++    E+V +G+++V
Sbjct: 283 YRKMLNVSGSIKCNAVTLSAILLACAHAGTIQTGKC---IHNQVVRMGLEENVYVGTSVV 339

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
           DMY+KCG+++ AR+ F  +++KN+ +W++MI GYG +G+  +AL++F  M      PNY+
Sbjct: 340 DMYSKCGRVEMARKAFQKIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYI 399

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
           TF+  L+AC HAGL+DKGR  + +M++ + ++P +EHY CMVDLLGRAG L++A   + E
Sbjct: 400 TFISVLAACSHAGLLDKGRYWYNAMKKRFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKE 459

Query: 412 MPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471
           M  KP++ +W ALLS+CR+H +VE+A I+A  +F+L+A +  G YV LSN  A AG W  
Sbjct: 460 MKVKPDAAIWGALLSACRIHKNVELAEISAKRLFELDATN-CGYYVLLSNIYAEAGMWKD 518

Query: 472 VTELREKMKLRGVLKDTGCSWV 493
           V  +R  +K RG+ K  G S V
Sbjct: 519 VERMRVLVKTRGIEKPPGYSSV 540



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/113 (24%), Positives = 62/113 (54%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           A +L + L    ++ T   G  IH  + + G++ N  +   ++ ++ KCG ++ A + F 
Sbjct: 297 AVTLSAILLACAHAGTIQTGKCIHNQVVRMGLEENVYVGTSVVDMYSKCGRVEMARKAFQ 356

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           ++ ++ + +++ MI GY  +G  +E+L +  ++  SG+ P+  TF  +L A +
Sbjct: 357 KIKEKNILSWSAMITGYGMHGHGQEALDIFNEMCRSGQNPNYITFISVLAACS 409


>gi|359489593|ref|XP_003633947.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Vitis vinifera]
          Length = 512

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 165/464 (35%), Positives = 252/464 (54%), Gaps = 46/464 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +I A+  + G++    + + LL    +  ++ YA ++FD +P+ T+  YN +I  Y  +G
Sbjct: 6   QIQAYTLRNGIEHTKQLIVSLL----QIPSIPYAHKLFDFIPKPTVFLYNKLIQAYSSHG 61

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              +  SL  ++   G  P+ ++F+ +  A     S+       GRM+H   +K     D
Sbjct: 62  PHHQCFSLYTQMCLQGCSPNEHSFTFLFSACASLSSH-----QQGRMLHTHFVKSGFGCD 116

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
               TALVD Y K G  S AR  FD M  ++V    SMI+G+   G +E A E+FR    
Sbjct: 117 VFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYARCGDLEGALELFRLMPA 176

Query: 246 KDIVVYNAMIEGYSISIETARK-------------------------------ALEVHCQ 274
           +++  + AMI GY+ + + A+                                ALEV  +
Sbjct: 177 RNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLASVLPACANLGALEVGER 236

Query: 275 L----IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNG 329
           +      N +F+++ + +AL++MYA+CG+ID A  VF+ +  ++N+ +W SMI G   +G
Sbjct: 237 IEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFEEIDGRRNLCSWNSMIMGLAVHG 296

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
             ++A+ELF  M      P+ VTF+G L AC H G+V +G+  FESMERD+S+ PK+EHY
Sbjct: 297 RCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVVEGQHFFESMERDFSIAPKLEHY 356

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
            CMVDLLGRAG L +A   +L MP +P+S VW  LL +C  H  VE+A  AA  +F+L  
Sbjct: 357 GCMVDLLGRAGELREAHDLILRMPMEPDSVVWGTLLGACSFHGHVELAEKAAGALFELEP 416

Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           ++ PG YV LSN  A AG+WD V  LR+ MK   + K  G S++
Sbjct: 417 SN-PGNYVILSNIYATAGRWDGVARLRKLMKGGKITKAAGYSFI 459



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 77/336 (22%), Positives = 134/336 (39%), Gaps = 61/336 (18%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H H  K+G   +      L+ ++ K G L  A + FDE+  R +  +N MIAGY +
Sbjct: 101 GRMLHTHFVKSGFGCDVFALTALVDMYAKLGLLSLARKQFDEMTVRDVPTWNSMIAGYAR 160

Query: 124 NGQVEESLSLVRKL---------------VSSGERPDGYTFSMILKASTCCRSN------ 162
            G +E +L L R +                 +G+     +  ++++  T  R N      
Sbjct: 161 CGDLEGALELFRLMPARNVTSWTAMISGYAQNGQYAKALSMFLMMEEETEMRPNEVTLAS 220

Query: 163 -VPLPRNLGRMVHAQILKCDVKADDV---LYT--ALVDSYVKGGKTSYARIVFDMMLEKN 216
            +P   NLG +   + ++   + +     LY   AL++ Y + G+   A  VF+ +  + 
Sbjct: 221 VLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFEEIDGRR 280

Query: 217 VICS-TSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQL 275
            +CS  SMI G    G  ++A E+F K + +     +    G  ++       +E     
Sbjct: 281 NLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACTHGGMVVE----- 335

Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
               FFE ++   ++       G                      M+D  G+ G   +A 
Sbjct: 336 -GQHFFESMERDFSIAPKLEHYG---------------------CMVDLLGRAGELREAH 373

Query: 336 ELFCMMQECCVQPNYV---TFLGALSACGHAGLVDK 368
           +L   M    ++P+ V   T LGA S  GH  L +K
Sbjct: 374 DLILRMP---MEPDSVVWGTLLGACSFHGHVELAEK 406



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 50/201 (24%), Positives = 89/201 (44%), Gaps = 18/201 (8%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
            +L S L    N      G +I  +    G   N  +S  LL ++ +CG +  A  +F+E
Sbjct: 216 VTLASVLPACANLGALEVGERIEVYARGNGYFKNLYVSNALLEMYARCGRIDKAWGVFEE 275

Query: 106 LP-QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP 164
           +  +R L ++N MI G   +G+ +E++ L  K++  G  PD  TF  +L A T       
Sbjct: 276 IDGRRNLCSWNSMIMGLAVHGRCDEAIELFYKMLREGAAPDDVTFVGVLLACT------- 328

Query: 165 LPRNLGRMVHAQILKCDVKADDVL------YTALVDSYVKGGKTSYAR-IVFDMMLEKNV 217
              + G +V  Q     ++ D  +      Y  +VD   + G+   A  ++  M +E + 
Sbjct: 329 ---HGGMVVEGQHFFESMERDFSIAPKLEHYGCMVDLLGRAGELREAHDLILRMPMEPDS 385

Query: 218 ICSTSMISGFMSQGFVEDAEE 238
           +   +++      G VE AE+
Sbjct: 386 VVWGTLLGACSFHGHVELAEK 406


>gi|218194384|gb|EEC76811.1| hypothetical protein OsI_14939 [Oryza sativa Indica Group]
          Length = 540

 Score =  283 bits (724), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 167/456 (36%), Positives = 252/456 (55%), Gaps = 18/456 (3%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +LPS L+    +  P      H    + G + +  +   L+  +  CG ++ A ++FD +
Sbjct: 71  ALPSLLRAIALARFPGTAGAAHGLAFRVGAEVDGFVGTALVRAYAACGRVEDARKVFDGM 130

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P R L A+  M+  Y +    EE+L L   +  S   PD    + +L  STC  +     
Sbjct: 131 PDRDLVAWGVMLDCYCQARNYEEALLLFHSMKRSRVVPDQVIIATVL--STCAHT----- 183

Query: 167 RNL--GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
           RNL  G+ +H+ +L  D   D  +  AL++ Y        A  +++ + EK+++ ST+M+
Sbjct: 184 RNLRFGKAIHSYMLVSDALIDAQVSCALMNMYASCADMEMAEKLYNRVSEKDIVLSTTMV 243

Query: 225 SGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFED- 283
            G+   G VE A  IF    EKD+V ++AMI GY+ S     +AL +   + ++    D 
Sbjct: 244 YGYAKNGKVEIAHSIFNGMPEKDVVSWSAMIAGYAES-SKPMEALNLFHDMQRSGVQPDE 302

Query: 284 ------VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
                 + +G+AL+DM++KCG +  A  VF+ M QKNV TWTS+I     +G+   AL L
Sbjct: 303 ITMLSILPIGNALIDMFSKCGSLTLALDVFNAMPQKNVVTWTSIITASAMHGDGRSALTL 362

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
           F  M+   +QPN VTFLG L AC HAGLV++GR +F+ M + Y ++P  EHY CMVDLLG
Sbjct: 363 FENMKSEGIQPNGVTFLGLLYACCHAGLVEEGRLLFKIMVQQYRIEPMHEHYGCMVDLLG 422

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457
           RA  L QA   +  M  +PN  +W +LL++CR+H D+E+   AA +I +L+ N   GA V
Sbjct: 423 RAKLLGQAADLIQSMHLRPNVVIWGSLLAACRMHGDLELGAFAAKKILELDPN-HGGAQV 481

Query: 458 ALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            LSN  A  G W+ V E+R  MK++G  K  GCSW+
Sbjct: 482 LLSNIYAEYGNWNDVKEVRGVMKVQGTWKKKGCSWM 517


>gi|15227724|ref|NP_178481.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206038|sp|Q9SI53.1|PP147_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03880, mitochondrial; Flags: Precursor
 gi|4582435|gb|AAD24821.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330250668|gb|AEC05762.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 630

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 162/480 (33%), Positives = 271/480 (56%), Gaps = 17/480 (3%)

Query: 20  YTLVPPNQTFPPKLQNYDSL-SNPLTATSLPSA--LQHYINSDTPFYGLKIHAHITKTGV 76
           +T +   +  P  ++  DSL S+ L A S   +  ++  I++     G  I  H+   G 
Sbjct: 33  FTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGH 92

Query: 77  KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRK 136
           +P   +   L+ +++K   L  A Q+FD++PQR + ++  MI+ Y K    +++L L+  
Sbjct: 93  RPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVL 152

Query: 137 LVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196
           ++    RP+ YT+S +L++     S+V       RM+H  I+K  +++D  + +AL+D +
Sbjct: 153 MLRDNVRPNVYTYSSVLRSCNG-MSDV-------RMLHCGIIKEGLESDVFVRSALIDVF 204

Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE 256
            K G+   A  VFD M+  + I   S+I GF      + A E+F++      +   A + 
Sbjct: 205 AKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLT 264

Query: 257 GY---SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK 313
                   +      ++ H  ++K  + +D+ L +ALVDMY KCG ++DA RVF+ M+++
Sbjct: 265 SVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKER 322

Query: 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF 373
           +V TW++MI G  +NG   +AL+LF  M+    +PNY+T +G L AC HAGL++ G   F
Sbjct: 323 DVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYF 382

Query: 374 ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDD 433
            SM++ Y + P  EHY CM+DLLG+AG L+ A+K + EM  +P++  W  LL +CR+  +
Sbjct: 383 RSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRN 442

Query: 434 VEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           + +A  AA ++  L+  D  G Y  LSN  A + KWDSV E+R +M+ RG+ K+ GCSW+
Sbjct: 443 MVLAEYAAKKVIALDPED-AGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWI 501


>gi|28392910|gb|AAO41891.1| putative selenium-binding protein [Arabidopsis thaliana]
          Length = 630

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 162/480 (33%), Positives = 271/480 (56%), Gaps = 17/480 (3%)

Query: 20  YTLVPPNQTFPPKLQNYDSL-SNPLTATSLPSA--LQHYINSDTPFYGLKIHAHITKTGV 76
           +T +   +  P  ++  DSL S+ L A S   +  ++  I++     G  I  H+   G 
Sbjct: 33  FTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGH 92

Query: 77  KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRK 136
           +P   +   L+ +++K   L  A Q+FD++PQR + ++  MI+ Y K    +++L L+  
Sbjct: 93  RPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVL 152

Query: 137 LVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196
           ++    RP+ YT+S +L++     S+V       RM+H  I+K  +++D  + +AL+D +
Sbjct: 153 MLRDNVRPNVYTYSSVLRSCNG-MSDV-------RMLHCGIIKEGLESDVFVRSALIDVF 204

Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE 256
            K G+   A  VFD M+  + I   S+I GF      + A E+F++      +   A + 
Sbjct: 205 AKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLT 264

Query: 257 GY---SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK 313
                   +      ++ H  ++K  + +D+ L +ALVDMY KCG ++DA RVF+ M+++
Sbjct: 265 SVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKER 322

Query: 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF 373
           +V TW++MI G  +NG   +AL+LF  M+    +PNY+T +G L AC HAGL++ G   F
Sbjct: 323 DVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYF 382

Query: 374 ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDD 433
            SM++ Y + P  EHY CM+DLLG+AG L+ A+K + EM  +P++  W  LL +CR+  +
Sbjct: 383 RSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRN 442

Query: 434 VEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           + +A  AA ++  L+  D  G Y  LSN  A + KWDSV E+R +M+ RG+ K+ GCSW+
Sbjct: 443 MVLAEYAAKKVIALDPED-AGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWI 501


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 158/465 (33%), Positives = 251/465 (53%), Gaps = 42/465 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNY------- 116
           GL++H H+ K G +    +   L+ ++ K G +  A Q FDE+P++ +  YN        
Sbjct: 161 GLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVVMYNTLIAGLMR 220

Query: 117 ------------------------MIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
                                   MIAG+ +NG   E++ L R++       D YTF  +
Sbjct: 221 CSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLENLEMDQYTFGSV 280

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L   T C   + L    G+ VHA I++ D + +  + +ALVD Y K      A  VF  M
Sbjct: 281 L---TACGGVMALQE--GKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKM 335

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKA 268
             KNV+  T+M+ G+   G+ E+A +IF       +E D     ++I   + ++ +  + 
Sbjct: 336 NCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCA-NLASLEEG 394

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
            + HC+ + +     + + +ALV +Y KCG I+D+ R+F  M   +  +WT+++ GY + 
Sbjct: 395 AQFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQF 454

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G  N+ L LF  M     +P+ VTF+G LSAC  AGLV KG +IFESM +++ + P  +H
Sbjct: 455 GKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDH 514

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
           Y CM+DL  RAG LE+A KF+ +MP  P++  WA+LLSSCR H ++E+   AA  + KL 
Sbjct: 515 YTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKWAAESLLKLE 574

Query: 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            ++   +Y+ LS+  AA GKW+ V  LR+ M+ +G+ K+ GCSW+
Sbjct: 575 PHN-TASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWI 618



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 119/422 (28%), Positives = 191/422 (45%), Gaps = 63/422 (14%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           KIH HI K    P   +   L+  + K   + YA ++FD++PQR L ++N +++ Y K  
Sbjct: 30  KIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKLA 89

Query: 126 QVEESLSL-----VRKLVSSGERPDGYTFSMIL----KASTCCRSNVPLPRN-------- 168
            + E   +      R +VS       Y     L    KA      N P   N        
Sbjct: 90  CLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTML 149

Query: 169 ----------LGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI 218
                     LG  VH  ++K   ++   + + LVD Y K G    AR  FD M EKNV+
Sbjct: 150 ILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNVV 209

Query: 219 CSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI------------------ 260
              ++I+G M    +ED+ ++F    EKD + + AMI G++                   
Sbjct: 210 MYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLEN 269

Query: 261 ---------SIETA-------RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDAR 304
                    S+ TA       ++  +VH  +I+  + +++ +GSALVDMY KC  I  A 
Sbjct: 270 LEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAE 329

Query: 305 RVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG 364
            VF  M  KNV +WT+M+ GYG+NG   +A+++FC MQ   ++P+  T    +S+C +  
Sbjct: 330 TVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLA 389

Query: 365 LVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAAL 424
            +++G + F        +   +     +V L G+ GS+E + +   EM    +   W AL
Sbjct: 390 SLEEGAQ-FHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEM-SYVDEVSWTAL 447

Query: 425 LS 426
           +S
Sbjct: 448 VS 449



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 79/322 (24%), Positives = 144/322 (44%), Gaps = 70/322 (21%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           + +H  I+K     +  L   LV +Y K  + +YAR VFD M ++N+    +++S +   
Sbjct: 29  KKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKL 88

Query: 231 GFVEDAEEIFRKTVEKDIVVYNAMIEGYS-------------------------ISIET- 264
             + + E +F     +D+V +N++I  Y+                         I++ T 
Sbjct: 89  ACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTM 148

Query: 265 ---------ARKALEVHCQLIKNVFFEDVKLGSALVDMYAK------------------- 296
                        L+VH  ++K  F   V +GS LVDMY+K                   
Sbjct: 149 LILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKTGLVFCARQAFDEMPEKNV 208

Query: 297 ------------CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
                       C +I+D+R++F  MQ+K+  +WT+MI G+ +NG   +A++LF  M+  
Sbjct: 209 VMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLE 268

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMER-DYSMKPKMEHYACMVDLLGRAGSLE 403
            ++ +  TF   L+ACG    + +G+++   + R DY  +  +   + +VD+  +  S++
Sbjct: 269 NLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDY--QDNIFVGSALVDMYCKCKSIK 326

Query: 404 QALKFVLEMPEKPNSDVWAALL 425
            A     +M  K N   W A+L
Sbjct: 327 SAETVFRKMNCK-NVVSWTAML 347



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 40/66 (60%)

Query: 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
           ++  R   ++HC +IK     ++ L + LV  YAK  +I  ARRVFD M Q+N+++W ++
Sbjct: 22  LKHCRDTKKIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTL 81

Query: 322 IDGYGK 327
           +  Y K
Sbjct: 82  LSSYSK 87


>gi|359473818|ref|XP_002263197.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Vitis vinifera]
          Length = 611

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 158/451 (35%), Positives = 262/451 (58%), Gaps = 12/451 (2%)

Query: 50  SALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQR 109
           +ALQ  I  D P  G  +H  I K G   +      LL +++K   L  A ++FDE+P+R
Sbjct: 43  NALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNILLNMYVKSDFLCDASKLFDEMPER 102

Query: 110 TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL 169
              ++  +I GY ++ +  E++ L  +L      P+ +TF+ +L+A   C +   L  NL
Sbjct: 103 NTISFVTLIQGYAESVRFLEAIELFVRL-HREVLPNQFTFASVLQA---CATMEGL--NL 156

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           G  +H  ++K  + +D  +  AL+D Y K G+   +  +F     +N +   ++I G + 
Sbjct: 157 GNQIHCHVIKIGLHSDVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQ 216

Query: 230 QGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
            G  E A  +F   +E  +    V Y++ +   + S+      L++H   +K  F +D+ 
Sbjct: 217 LGDGEKALRLFLNMLEYRVQATEVTYSSALRACA-SLAALEPGLQIHSLTVKTTFDKDIV 275

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           + +AL+DMYAKCG I DAR VFD M +++  +W +MI GY  +G   +AL +F  MQE  
Sbjct: 276 VTNALIDMYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGLGREALRIFDKMQETE 335

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
           V+P+ +TF+G LSAC +AGL+D+G+  F SM +D+ ++P +EHY CMV LLGR G L++A
Sbjct: 336 VKPDKLTFVGVLSACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKA 395

Query: 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465
           +K + E+P +P+  VW ALL +C +H+D+E+  I+A  + ++   D+   +V LSN  A 
Sbjct: 396 VKLIDEIPFQPSVMVWRALLGACVIHNDIELGRISAQRVLEMEPQDK-ATHVLLSNMYAT 454

Query: 466 AGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
           A +WD+V  +R+ MK +GV K+ G SW+ ++
Sbjct: 455 AKRWDNVASVRKNMKRKGVKKEPGLSWIESQ 485


>gi|449443492|ref|XP_004139511.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Cucumis sativus]
          Length = 678

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 156/440 (35%), Positives = 264/440 (60%), Gaps = 16/440 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IHAHI  +  + +  +   +L ++ KCG+L+ A  +FD++P + + ++  +I+GY +
Sbjct: 124 GRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQ 183

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +GQ  E+L+L  K++  G +P+ +T S +LKAS    S+     + GR +HA  LK    
Sbjct: 184 SGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSD-----HHGRQLHAFSLKYGYD 238

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
            +  + ++L+D Y +      A+++F+ +  KNV+   ++I+G   +G  E    +F   
Sbjct: 239 MNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQM 298

Query: 241 -RKTVEKDIVVYNAMIEG--YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
            R+  E     Y+++      S S+E  +    VH  +IK+       +G+ L+DMYAK 
Sbjct: 299 LRQGFEPTHFTYSSVFTACASSGSLEQGK---WVHAHVIKSGGQPIAYIGNTLIDMYAKS 355

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G I DA++VF  + ++++ +W S+I GY ++G   +AL+LF  M +  VQPN +TFL  L
Sbjct: 356 GSIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVL 415

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           +AC H+GL+D+G+  FE M++ + ++ ++ H+  +VDLLGRAG L +A KF+ EMP KP 
Sbjct: 416 TACSHSGLLDEGQYYFELMKK-HKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPT 474

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
           + VW ALL SCR+H ++++   AA +IF+L+ +D  G +V LSN  A+AG+     ++R+
Sbjct: 475 AAVWGALLGSCRMHKNMDLGVYAAEQIFELDPHD-SGPHVLLSNIYASAGRLSDAAKVRK 533

Query: 478 KMKLRGVLKDTGCSWVGTES 497
            MK  GV K+  CSWV  E+
Sbjct: 534 MMKESGVKKEPACSWVEIEN 553



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 145/299 (48%), Gaps = 18/299 (6%)

Query: 31  PKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILH 90
           PK+ +     N  T +SL   L+      +  +G ++HA   K G   N ++   LL ++
Sbjct: 195 PKMLHLGFQPNEFTLSSL---LKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMY 251

Query: 91  LKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFS 150
            +   ++ A  +F+ L  + + ++N +IAG+ + G+ E  + L  +++  G  P  +T+S
Sbjct: 252 ARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFLQMLRQGFEPTHFTYS 311

Query: 151 MILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFD 210
            +    T C S+  L +  G+ VHA ++K   +    +   L+D Y K G    A+ VF 
Sbjct: 312 SVF---TACASSGSLEQ--GKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFR 366

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSIS--IET 264
            +++++++   S+ISG+   G   +A    E++ +  V+ + + + +++   S S  ++ 
Sbjct: 367 RLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDE 426

Query: 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMI 322
            +   E+   + K+     V     +VD+  + G++++A +  + M  K     W +++
Sbjct: 427 GQYYFEL---MKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALL 482


>gi|115461454|ref|NP_001054327.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|38345824|emb|CAE01858.2| OSJNBa0070M12.7 [Oryza sativa Japonica Group]
 gi|113565898|dbj|BAF16241.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|215766744|dbj|BAG98972.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629815|gb|EEE61947.1| hypothetical protein OsJ_16704 [Oryza sativa Japonica Group]
          Length = 690

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 164/436 (37%), Positives = 250/436 (57%), Gaps = 14/436 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH    +TG + +  ++  L++++ K      A ++FD +P R L+ +N MI+GY  
Sbjct: 122 GVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAH 181

Query: 124 NGQVEESLSLVRKLVSS-GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            GQ  +SL + R++     E+PD +TF+ +LKA     S +   R  G  VHA +    V
Sbjct: 182 AGQGRDSLLVFREMQRRHDEQPDEFTFASLLKAC----SGLGAARE-GAQVHAAMAVRGV 236

Query: 183 K--ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
              ++ +L  AL+D YVK  +   A  VFD +  +N I  T++I G   +G V++A  +F
Sbjct: 237 SPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLF 296

Query: 241 RK----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
           R+     V  D  V ++++  ++       +  +VHC   K     DV + ++LVDMY K
Sbjct: 297 RRFWSSGVRADGHVLSSVVAVFA-DFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLK 355

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG   +A R F  M  +NV +WT+MI+G GK+G+  +A++LF  MQE  V+ + V +L  
Sbjct: 356 CGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQEEGVEADEVAYLAL 415

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           LSAC H+GLVD+ R  F  + +D  M+PK EHYACMVDLLGRAG L +A + +L MP +P
Sbjct: 416 LSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEP 475

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
              VW  LLS+CR+H DV +     + +  ++  D P  YV LSN LA AG+W     +R
Sbjct: 476 TVGVWQTLLSACRVHKDVAVGREVGDVLLAVDG-DNPVNYVMLSNILAEAGEWRECQGIR 534

Query: 477 EKMKLRGVLKDTGCSW 492
             M+ +G+ K  GCSW
Sbjct: 535 GAMRRKGLRKQGGCSW 550



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 202/415 (48%), Gaps = 25/415 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+++HA + K G   +T ++  L+ ++ KCG L  AG++FD +P+R + ++  ++ G+L 
Sbjct: 23  GVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLH 82

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G+  E L L  ++  SG  P+ +T S  LKA   C          G  +H   ++   +
Sbjct: 83  HGEARECLRLFGEMRGSGTSPNEFTLSATLKA---CGGGT----RAGVQIHGVCVRTGFE 135

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
             DV+  +LV  Y KG  T  AR VFD++  +N+    SMISG+   G   D+  +FR+ 
Sbjct: 136 GHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREM 195

Query: 244 VEK-----DIVVYNAMIEGYSISIETARKALEVHCQL-IKNVF-FEDVKLGSALVDMYAK 296
             +     D   + ++++  S  +  AR+  +VH  + ++ V    +  L  AL+D+Y K
Sbjct: 196 QRRHDEQPDEFTFASLLKACS-GLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVK 254

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           C ++  A +VFD ++++N   WT++I G+ + G   +A+ LF       V+ +       
Sbjct: 255 CHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSV 314

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKP----KMEHYACMVDLLGRAGSLEQALKFVLEM 412
           ++      LV++G+++       Y+ K      +     +VD+  + G   +A +   EM
Sbjct: 315 VAVFADFALVEQGKQVH-----CYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREM 369

Query: 413 PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG 467
           P + N   W A+++    H     A     E+ +        AY+AL +  + +G
Sbjct: 370 PAR-NVVSWTAMINGVGKHGHGREAIDLFEEMQEEGVEADEVAYLALLSACSHSG 423



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 55/96 (57%)

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
           R  +++H  L+K  F  D  L + L+DMYAKCGK+  A  VFD M ++NV +WT+++ G+
Sbjct: 21  RGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGF 80

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
             +G   + L LF  M+     PN  T    L ACG
Sbjct: 81  LHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACG 116


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 155/469 (33%), Positives = 249/469 (53%), Gaps = 42/469 (8%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH  I K G      +   L+ ++ K G +  A Q+FDE+ +R +  YN MI G L+
Sbjct: 157 GRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQERNVVMYNTMITGLLR 216

Query: 124 NGQVE-------------------------------ESLSLVRKLVSSGERPDGYTFSMI 152
           +G V+                               E++ L R +   G   D YTF  +
Sbjct: 217 SGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDMRQEGMAMDQYTFGSV 276

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L A    R+        G+ +H  I++     +  + +ALVD Y K     YA  VF  M
Sbjct: 277 LTACGGLRA-----LKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSVRYAEAVFKRM 331

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKA 268
             KNV+  T+M+ G+   GF E+A  +F    R  +E D     ++I   + ++ +  + 
Sbjct: 332 ANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSCA-NLASLEEG 390

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
            + HCQ + +     + + +AL+ +Y KCG I+D+ ++FD M  ++  +WT+++ GY + 
Sbjct: 391 AQFHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVSWTALVSGYAQF 450

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G  N+ ++LF  M    ++P+ VTF+  LSAC  AGLV++G++ FESM +D+ + P  +H
Sbjct: 451 GKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAGLVERGQQYFESMLKDHGIIPFSDH 510

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
           Y CM+DL GRAG LE+A  F+ +MP  P+S  WA LLSSCRL+ + E+   AA  + +L+
Sbjct: 511 YTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATLLSSCRLYGNEEIGKWAAESLLELD 570

Query: 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTES 497
             + P  Y+ LS+  AA GKW +V +LR  M+ +G  K+ G SW+  +S
Sbjct: 571 PQN-PAGYILLSSIYAAKGKWSNVAQLRRGMREKGARKEPGFSWIKYKS 618



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 117/426 (27%), Positives = 199/426 (46%), Gaps = 71/426 (16%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           K+H  I K+   P T +   L+  + K G + YA  +FD++PQ    ++N M++ Y K+G
Sbjct: 26  KLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFSWNTMLSAYSKSG 85

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR------------------ 167
                LS ++++ S     DG +++ ++    C  S V   +                  
Sbjct: 86  D----LSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGVLNLNRITF 141

Query: 168 -------------NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE 214
                        +LGR +H QI+K    A   + ++LVD Y K G  S A  VFD + E
Sbjct: 142 STMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSVASQVFDEVQE 201

Query: 215 KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEG----------------- 257
           +NV+   +MI+G +  G V+D++ +F    E+D + +  MI G                 
Sbjct: 202 RNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLEAEAMDLFRDM 261

Query: 258 ---------YSI-SIETA-------RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
                    Y+  S+ TA       ++  E+H  +I++ +  +V +GSALVDMY KC  +
Sbjct: 262 RQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNHNVFVGSALVDMYCKCRSV 321

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
             A  VF  M  KNV +WT+M+ GYG+NG   +A+ +FC MQ   ++P+  T    +S+C
Sbjct: 322 RYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIEPDDFTLGSVISSC 381

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            +   +++G + F        +   +     ++ L G+ GS+E + +   EM  +     
Sbjct: 382 ANLASLEEGAQ-FHCQALVSGLISFITVSNALITLYGKCGSIEDSNQLFDEMSFRDEVS- 439

Query: 421 WAALLS 426
           W AL+S
Sbjct: 440 WTALVS 445



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/334 (26%), Positives = 141/334 (42%), Gaps = 71/334 (21%)

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
           CC +     +   + +H  I+K     +  LY  L+++Y K G  +YAR VFD M + N 
Sbjct: 15  CCETR---NQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNS 71

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI--SIETARKAL------ 269
               +M+S +   G +   +EIF     +D V +N++I GY    S+  A K        
Sbjct: 72  FSWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKD 131

Query: 270 ---------------------------EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
                                      ++H Q++K  F   V +GS+LVDMYAK G +  
Sbjct: 132 GVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKMGLVSV 191

Query: 303 ARRVFDHMQQKNV-------------------------------FTWTSMIDGYGKNGNP 331
           A +VFD +Q++NV                                +WT+MI G  +NG  
Sbjct: 192 ASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLIQNGLE 251

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC 391
            +A++LF  M++  +  +  TF   L+ACG    + +G+EI   + R       +   + 
Sbjct: 252 AEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRS-GYNHNVFVGSA 310

Query: 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
           +VD+  +  S+  A      M  K N   W A+L
Sbjct: 311 LVDMYCKCRSVRYAEAVFKRMANK-NVVSWTAML 343


>gi|449443225|ref|XP_004139380.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 181/525 (34%), Positives = 273/525 (52%), Gaps = 55/525 (10%)

Query: 19  HYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQH--YINSDTPFYGLK---------- 66
           H+T  P    F   +  +   SN    T   S LQ+  Y +  T  Y L+          
Sbjct: 90  HFTPYPNLYIFNTMILGF-PFSNEKAFTIYRSMLQNGTYPDRQTFLYLLQTTKFVAEVKQ 148

Query: 67  IHAHITKTGVKPNTN-ISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           IH H    G+      +   L+  ++  G  + A Q+FDE+  R + +YN MI G+ K G
Sbjct: 149 IHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVG 208

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
            +   L L   + S G  PD +T   +L               LG+ VHAQI K    ++
Sbjct: 209 NILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGET-----KLGKSVHAQIEKSIGSSN 263

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
            +LY AL+D YVK  +   AR VFD  +EK+ +   ++I+G+   G +E A ++F +   
Sbjct: 264 LILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPT 323

Query: 246 KDIVVYNAMIEGYS------------------------------ISIETARKALE----V 271
           +DIV +N++I GY+                              IS      AL+    +
Sbjct: 324 RDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWI 383

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
           H   +K +   +   GSAL+DMY KCG I+ A  +F+ + +K+V TWT+MI G+  +G  
Sbjct: 384 HGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFG 443

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC 391
           N+ALELF +MQ    +PN VTF+  L+AC H+GLVD+G +IF SM++ YS++P +EHY C
Sbjct: 444 NKALELFSVMQ-AETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGC 502

Query: 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451
           +VDLL R+G L  A+  + +MP +P+  +W A+LS+CR+H ++E+A  A  E+ KL   +
Sbjct: 503 LVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEP-E 561

Query: 452 RPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
           + G Y+ LSN  A  G+W     +RE M  RGV K  GCS V  +
Sbjct: 562 KEGGYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVD 606


>gi|449527343|ref|XP_004170671.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g24000, mitochondrial-like [Cucumis sativus]
          Length = 677

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 155/439 (35%), Positives = 265/439 (60%), Gaps = 15/439 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IHAHI  +  + +  +   +L ++ KCG+L+ A  +FD++P + + ++  +I+GY +
Sbjct: 124 GRAIHAHIQSSTFEDDLVLLNFILNMYAKCGSLEEAQDLFDKMPTKDMVSWTVLISGYSQ 183

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +GQ  E+L+L  K++  G +P+ +T S +LKAS    S+     + GR +HA  LK    
Sbjct: 184 SGQASEALALFPKMLHLGFQPNEFTLSSLLKASGTGPSD-----HHGRQLHAFSLKYGYD 238

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
            +  + ++L+D Y +      A+++F+ +  KNV+   ++I+G   +G  E    +F   
Sbjct: 239 MNVHVGSSLLDMYARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQM 298

Query: 241 -RKTVEKDIVVYNAMIE-GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
            R+  E     Y++++    S S+E  +    VH  +IK+       +G+ L+DMYAK G
Sbjct: 299 LRQGFEPTHFTYSSVLACASSGSLEQGK---WVHAHVIKSGGQPIAYIGNTLIDMYAKSG 355

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            I DA++VF  + ++++ +W S+I GY ++G   +AL+LF  M +  VQPN +TFL  L+
Sbjct: 356 SIKDAKKVFRRLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLT 415

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC H+GL+D+G+  FE M++ + ++ ++ H+  +VDLLGRAG L +A KF+ EMP KP +
Sbjct: 416 ACSHSGLLDEGQYYFELMKK-HKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTA 474

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            VW ALL +CR+H ++++   AA +IF+L+ +D  G +V LSN  A+AG+     ++R+ 
Sbjct: 475 AVWGALLGACRMHKNMDLGVYAAEQIFELDPHD-SGPHVLLSNIYASAGRLSDAAKVRKM 533

Query: 479 MKLRGVLKDTGCSWVGTES 497
           MK  GV K+  CSWV  E+
Sbjct: 534 MKESGVKKEPACSWVEIEN 552



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 66/299 (22%), Positives = 145/299 (48%), Gaps = 19/299 (6%)

Query: 31  PKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILH 90
           PK+ +     N  T +SL   L+      +  +G ++HA   K G   N ++   LL ++
Sbjct: 195 PKMLHLGFQPNEFTLSSL---LKASGTGPSDHHGRQLHAFSLKYGYDMNVHVGSSLLDMY 251

Query: 91  LKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFS 150
            +   ++ A  +F+ L  + + ++N +IAG+ + G+ E  + L  +++  G  P  +T+S
Sbjct: 252 ARWAHMREAKVIFNSLAAKNVVSWNALIAGHARKGEGEHVMRLFXQMLRQGFEPTHFTYS 311

Query: 151 MILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFD 210
            +L     C S+  L +  G+ VHA ++K   +    +   L+D Y K G    A+ VF 
Sbjct: 312 SVL----ACASSGSLEQ--GKWVHAHVIKSGGQPIAYIGNTLIDMYAKSGSIKDAKKVFR 365

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSIS--IET 264
            +++++++   S+ISG+   G   +A    E++ +  V+ + + + +++   S S  ++ 
Sbjct: 366 RLVKQDIVSWNSIISGYAQHGLGAEALQLFEQMLKAKVQPNEITFLSVLTACSHSGLLDE 425

Query: 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMI 322
            +   E+   + K+     V     +VD+  + G++++A +  + M  K     W +++
Sbjct: 426 GQYYFEL---MKKHKIEAQVAHHVTVVDLLGRAGRLNEANKFIEEMPIKPTAAVWGALL 481


>gi|297800728|ref|XP_002868248.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314084|gb|EFH44507.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 725

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 172/492 (34%), Positives = 258/492 (52%), Gaps = 51/492 (10%)

Query: 36  YDSLSNP--LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKC 93
           +D +S P  L A S  SAL         F G+++H    K     +  +   L+ ++  C
Sbjct: 112 FDRISFPPILKAVSKVSAL---------FEGMELHGFAFKIATLSDPFVETGLMDMYAAC 162

Query: 94  GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
           G + YA  +FDE+ QR +  +N MI  Y + G ++E+  L  ++  S   PD      I+
Sbjct: 163 GRINYARNVFDEMSQRDVVTWNTMIERYCRFGLLDEAFKLFEEMKDSNVMPDEMILCNIV 222

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
             S C R+         R ++  +++ DV+ D  L TALV  Y   G    A   F  M 
Sbjct: 223 --SACGRTG---NMRYNRAIYDFLIENDVRMDTHLLTALVTMYAGAGCMDMAMEFFRKMS 277

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS---IETARKALE 270
            +N+  ST+M+SG+   G ++DA  IF +T  KD+V +  MI  Y+ S    E  R   E
Sbjct: 278 VRNLFVSTAMVSGYSKAGRLDDARVIFDQTEMKDLVCWTTMISAYAESDHPQEALRVFEE 337

Query: 271 VHCQLIK-------NVFFEDVKLGS------------------------ALVDMYAKCGK 299
           + C  IK       +V    V LG+                        AL++MYAKCG 
Sbjct: 338 MCCSGIKPDVVTMLSVISACVNLGTLDKAKWVHRYTHLNGLESVLPIDNALINMYAKCGG 397

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +D AR VF+ M  +NV +W+SMI+ +  +G  + +L LF  M++  V+PN VTF+G L  
Sbjct: 398 LDAARDVFEKMPTRNVVSWSSMINAFAMHGEASDSLSLFAQMKQENVEPNEVTFVGVLYG 457

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H+GLV++G++IF SM  +Y++ PK+EHY CMVDL GRA  L +AL+ +  MP  PN  
Sbjct: 458 CSHSGLVEEGKKIFASMTDEYNITPKIEHYGCMVDLFGRANLLREALEVIESMPMAPNVV 517

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +W +L+S+CR+H ++E+  +AA  I KL   D  GA V +SN  A   +WD V  +R  M
Sbjct: 518 IWGSLMSACRVHGELELGELAAKRILKLEP-DHDGALVLMSNIYAREYRWDYVRIIRWIM 576

Query: 480 KLRGVLKDTGCS 491
           + + V K+ G S
Sbjct: 577 EKKKVFKEKGLS 588


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 154/451 (34%), Positives = 254/451 (56%), Gaps = 10/451 (2%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
           T+L S L    N      G  +H    K         S  LL ++ KCG L  A ++F +
Sbjct: 297 TTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVK 356

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           +   T+ ++  +IA Y++ G   +++ L  ++ S G RPD YT + I+ A  C  S    
Sbjct: 357 MGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSS---- 412

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
             + GR VH+ ++K  + ++  +  AL++ Y K G    AR+VF  +  K+++   +MI 
Sbjct: 413 -LDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIG 471

Query: 226 GFMSQGFVEDAEEIF---RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
           G+       +A E+F   +K  + D +    ++   +  +    K  E+H  +++  +F 
Sbjct: 472 GYSQNLLPNEALELFLDMQKQFKPDDITMACVLPACA-GLAALDKGREIHGHILRRGYFS 530

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           D+ +  ALVDMYAKCG +  A+ +FD + +K++ +WT MI GYG +G  N+A+  F  M+
Sbjct: 531 DLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMR 590

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
              ++P+  +F   L+AC H+GL+++G + F SM  +  ++PK+EHYAC+VDLL R G+L
Sbjct: 591 IAGIEPDESSFSAILNACSHSGLLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNL 650

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
            +A KF+  MP KP++ +W  LLS CR+H DV++A   A  IF+L   D    YV L+N 
Sbjct: 651 SKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFELEP-DNTRYYVVLANV 709

Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            A A KW+ V +LR++M+ RG  ++ GCSW+
Sbjct: 710 YAEAEKWEEVKKLRKRMQKRGFKQNPGCSWI 740



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/383 (27%), Positives = 191/383 (49%), Gaps = 13/383 (3%)

Query: 38  SLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALK 97
           S S  L   S  S LQ      +   G ++H+ I   G+  +  +  KL+ +++ CG L 
Sbjct: 87  SKSYELGLNSYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLV 146

Query: 98  YAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
              ++FD++    +  +N +++ Y K G   ES+SL +K+   G   + YTF+ +LK   
Sbjct: 147 QGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLK--- 203

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
            C + +   +   R VH  +LK    ++  +  +L+ +Y K G    A  +FD + E +V
Sbjct: 204 -CFAALGKVKECKR-VHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDV 261

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKT----VEKDI-VVYNAMIEGYSISIETARKALEVH 272
           +   SMI+G +  GF  +  EIF +     VE D+  + + ++   +I   +  +AL  H
Sbjct: 262 VSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRAL--H 319

Query: 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPN 332
              +K  F E+V   + L+DMY+KCG ++ A  VF  M    + +WTS+I  Y + G  +
Sbjct: 320 GFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYS 379

Query: 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACM 392
            A+ LF  MQ   V+P+  T    + AC  +  +DKGR++   + ++  M   +     +
Sbjct: 380 DAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKN-GMGSNLPVTNAL 438

Query: 393 VDLLGRAGSLEQALKFVLEMPEK 415
           +++  + GS+E+A     ++P K
Sbjct: 439 INMYAKCGSVEEARLVFSKIPVK 461



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 93/215 (43%), Gaps = 21/215 (9%)

Query: 224 ISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS--ISIETARKALE----VHCQLIK 277
           I+ F   G + +A E+  K+       Y   +  Y   + +   +K+LE    VH  +I 
Sbjct: 68  INKFCEMGDLRNAIELLTKSKS-----YELGLNSYCSVLQLCAEKKSLEDGKRVHSVIIS 122

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
           N    D  LG+ LV MY  CG +   R++FD +    VF W  ++  Y K GN  +++ L
Sbjct: 123 NGISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSL 182

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
           F  MQ+  V  N  TF   L      G V + + +       Y +K        +V+ L 
Sbjct: 183 FKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRV-----HGYVLKLGFGSNTAVVNSLI 237

Query: 398 RA----GSLEQALKFVLEMPEKPNSDVWAALLSSC 428
            A    G +E A     E+ E P+   W ++++ C
Sbjct: 238 AAYFKFGGVESAHNLFDELSE-PDVVSWNSMINGC 271


>gi|449528479|ref|XP_004171232.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04750,
           mitochondrial-like [Cucumis sativus]
          Length = 586

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 181/525 (34%), Positives = 273/525 (52%), Gaps = 55/525 (10%)

Query: 19  HYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQH--YINSDTPFYGLK---------- 66
           H+T  P    F   +  +   SN    T   S LQ+  Y +  T  Y L+          
Sbjct: 25  HFTPYPNLYIFNTMILGF-PFSNEKAFTIYRSMLQNGTYPDRQTFLYLLQTTKFVAEVKQ 83

Query: 67  IHAHITKTGV-KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           IH H    G+      +   L+  ++  G  + A Q+FDE+  R + +YN MI G+ K G
Sbjct: 84  IHCHALVFGLLSKEEYLRNSLIKRYVDNGCFECARQLFDEMSDRNVVSYNTMILGFAKVG 143

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
            +   L L   + S G  PD +T   +L               LG+ VHAQI K    ++
Sbjct: 144 NILGILELFHDMRSHGLEPDDFTMLGLLLLCGQLGET-----KLGKSVHAQIEKSIGSSN 198

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
            +LY AL+D YVK  +   AR VFD  +EK+ +   ++I+G+   G +E A ++F +   
Sbjct: 199 LILYNALLDMYVKCNELKLARKVFDGPMEKDTVSWNTIIAGYAKVGELELACDLFNQIPT 258

Query: 246 KDIVVYNAMIEGYS------------------------------ISIETARKALE----V 271
           +DIV +N++I GY+                              IS      AL+    +
Sbjct: 259 RDIVSWNSLISGYAQNGDYVTVKCLFTRMFAENVKPDKVTIVNLISAVAEMGALDQGRWI 318

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
           H   +K +   +   GSAL+DMY KCG I+ A  +F+ + +K+V TWT+MI G+  +G  
Sbjct: 319 HGLAVKMLTKIEAFSGSALIDMYCKCGSIERAFVIFNQIPEKDVTTWTTMITGFAFHGFG 378

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC 391
           N+ALELF +MQ    +PN VTF+  L+AC H+GLVD+G +IF SM++ YS++P +EHY C
Sbjct: 379 NKALELFSVMQ-AETKPNDVTFVSVLAACSHSGLVDEGLKIFSSMKKRYSIEPGVEHYGC 437

Query: 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451
           +VDLL R+G L  A+  + +MP +P+  +W A+LS+CR+H ++E+A  A  E+ KL   +
Sbjct: 438 LVDLLCRSGRLLDAIGVIEKMPMEPSRSIWGAVLSACRMHRNMELAERALMELLKLEP-E 496

Query: 452 RPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
           + G Y+ LSN  A  G+W     +RE M  RGV K  GCS V  +
Sbjct: 497 KEGGYILLSNVYATCGRWSYSDSIREVMNSRGVKKIAGCSSVAVD 541


>gi|224106277|ref|XP_002314110.1| predicted protein [Populus trichocarpa]
 gi|222850518|gb|EEE88065.1| predicted protein [Populus trichocarpa]
          Length = 738

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 163/481 (33%), Positives = 258/481 (53%), Gaps = 43/481 (8%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           + P  ++      +   G  IH  + K     +  IS  L+  +   G L  A  +F ++
Sbjct: 133 TFPFVIKAATEVSSLLAGQAIHGMVMKASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKI 192

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
            ++ + ++N MI+G+++ G  EE+L L +++     RP+  T   +L A   C   + L 
Sbjct: 193 VEKDIVSWNSMISGFVQGGSPEEALQLFKRMKMENARPNRVTMVGVLSA---CAKRIDL- 248

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
              GR     I +  +  + +L  A++D YVK G    AR +FD M EK+++  T+MI G
Sbjct: 249 -EFGRWACDYIERNGIDINLILSNAMLDMYVKCGSLEDARRLFDKMEEKDIVSWTTMIDG 307

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV--HCQLIKNVFFEDV 284
           +   G  + A  +F     +DI  +NA+I  Y  +    ++AL +    QL KN    +V
Sbjct: 308 YAKVGDYDAARRVFDVMPREDITAWNALISSYQQN-GKPKEALAIFRELQLNKNTKPNEV 366

Query: 285 KLGS----------------------------------ALVDMYAKCGKIDDARRVFDHM 310
            L S                                  +L+DMY+KCG ++ A  VF  +
Sbjct: 367 TLASTLAACAQLGAMDLGGWIHVYIKKQGIKLNFHITTSLIDMYSKCGHLEKALEVFYSV 426

Query: 311 QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR 370
           ++++VF W++MI G   +G+   A++LF  MQE  V+PN VTF   L AC H+GLVD+GR
Sbjct: 427 ERRDVFVWSAMIAGLAMHGHGRAAIDLFSKMQETKVKPNAVTFTNLLCACSHSGLVDEGR 486

Query: 371 EIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRL 430
             F  M   Y + P  +HYACMVD+LGRAG LE+A++ + +MP  P++ VW ALL +CR+
Sbjct: 487 LFFNQMRPVYGVVPGSKHYACMVDILGRAGCLEEAVELIEKMPIVPSASVWGALLGACRI 546

Query: 431 HDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGC 490
           + +VE+A +A + + + ++N+  GAYV LSN  A AGKWD V+ LR+ MK+ G+ K+ GC
Sbjct: 547 YGNVELAEMACSRLLETDSNNH-GAYVLLSNIYAKAGKWDCVSRLRQHMKVSGLEKEPGC 605

Query: 491 S 491
           S
Sbjct: 606 S 606



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 113/411 (27%), Positives = 202/411 (49%), Gaps = 59/411 (14%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCG-----ALKYAGQMFDELPQRTLSAYNYMIAG 120
           ++HAH+ +TG+  +   + KL      C      +L YA ++FD++P+  L  +N +I  
Sbjct: 48  QLHAHMLRTGLFFDPPSATKLFT---ACALSSPSSLDYACKVFDQIPRPNLYTWNTLIRA 104

Query: 121 YLKNGQ-VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           +  + + ++  L  ++ L  S   P+ YTF  ++KA+T   S +      G+ +H  ++K
Sbjct: 105 FASSPKPIQGLLVFIQMLHESQRFPNSYTFPFVIKAATEVSSLLA-----GQAIHGMVMK 159

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
               +D  +  +L+  Y   G    A +VF  ++EK+++   SMISGF+  G  E+A ++
Sbjct: 160 ASFGSDLFISNSLIHFYSSLGDLDSAYLVFSKIVEKDIVSWNSMISGFVQGGSPEEALQL 219

Query: 240 FRKTVEKDIVVYNAMIEGY------SISIETARKALEVHCQLI-KNVFFEDVKLGSALVD 292
           F++   ++       + G        I +E  R A    C  I +N    ++ L +A++D
Sbjct: 220 FKRMKMENARPNRVTMVGVLSACAKRIDLEFGRWA----CDYIERNGIDINLILSNAMLD 275

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK------------------------- 327
           MY KCG ++DARR+FD M++K++ +WT+MIDGY K                         
Sbjct: 276 MYVKCGSLEDARRLFDKMEEKDIVSWTTMIDGYAKVGDYDAARRVFDVMPREDITAWNAL 335

Query: 328 ------NGNPNQALELFCMMQ-ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
                 NG P +AL +F  +Q     +PN VT    L+AC   G +D G  I   +++  
Sbjct: 336 ISSYQQNGKPKEALAIFRELQLNKNTKPNEVTLASTLAACAQLGAMDLGGWIHVYIKKQ- 394

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
            +K        ++D+  + G LE+AL+ V    E+ +  VW+A+++   +H
Sbjct: 395 GIKLNFHITTSLIDMYSKCGHLEKALE-VFYSVERRDVFVWSAMIAGLAMH 444


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 145/442 (32%), Positives = 259/442 (58%), Gaps = 13/442 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HAH+ KT   P T +  +LLI + KC  L+ A ++ DE+P++ + ++  MI+ Y +
Sbjct: 70  GQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQ 129

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G   E+LS+  +++ S  +P+ +TF+ +L  ++C R++      LG+ +H  I+K +  
Sbjct: 130 TGHSSEALSVFAEMMRSDGKPNEFTFATVL--TSCIRAS---GLALGKQIHGLIVKWNYD 184

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +   + ++L+D Y K G+   AR +F+ + E++V+  T++I+G+   G  E+A E+F++ 
Sbjct: 185 SHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRL 244

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               +  + V Y +++   S  +       + HC +++        L ++L+DMY+KCG 
Sbjct: 245 QSEGMRPNYVTYASLLTALS-GLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGN 303

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ-ECCVQPNYVTFLGALS 358
           +  A+R+FD+M ++   +W +M+ GY K+G   + LELF +M+ E  V+P+ VT L  LS
Sbjct: 304 LSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLS 363

Query: 359 ACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            C H  + D G  I++ M   +Y +KP  EHY C+VD+LGRAG +++A +F+  MP KP 
Sbjct: 364 GCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPT 423

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
           + V  +LL +CR+H  V++     + + ++   +  G YV LSN  A+AG+W+ V  +R 
Sbjct: 424 AGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPEN-AGNYVILSNLYASAGRWEDVNNVRA 482

Query: 478 KMKLRGVLKDTGCSWVGTESGL 499
            M  + V K+ G SW+  E  L
Sbjct: 483 MMMQKAVTKEPGRSWIQHEQTL 504



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 91/335 (27%), Positives = 163/335 (48%), Gaps = 32/335 (9%)

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           F   P   L  +   I+    NG+++E+L    ++V  G     + +  +L A   C   
Sbjct: 12  FSSSPNSVLQTFR-PISQLCSNGRLQEALL---EMVMLGPEIGFHCYDALLNA---CLDK 64

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
             L    G+ VHA ++K        L T L+  Y K      AR V D M EKNV+  T+
Sbjct: 65  RALRE--GQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTA 122

Query: 223 MISGFMSQGFVEDAEEIFRKTVEKD--------IVVYNAMIEGYSISIETARKALEVHCQ 274
           MIS +   G   +A  +F + +  D          V  + I    +++       ++H  
Sbjct: 123 MISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLAL-----GKQIHGL 177

Query: 275 LIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQA 334
           ++K  +   + +GS+L+DMYAK G+I++AR +F+ + +++V + T++I GY + G   +A
Sbjct: 178 IVKWNYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEA 237

Query: 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC--- 391
           LE+F  +Q   ++PNYVT+   L+A     L+D G++        + ++ ++  YA    
Sbjct: 238 LEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQ-----AHCHVLRRELPFYAVLQN 292

Query: 392 -MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
            ++D+  + G+L  A +    MPE+  +  W A+L
Sbjct: 293 SLIDMYSKCGNLSYAQRLFDNMPER-TAISWNAML 326



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 81/174 (46%), Gaps = 17/174 (9%)

Query: 35  NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           NY + ++ LTA S  + L H         G + H H+ +  +     +   L+ ++ KCG
Sbjct: 252 NYVTYASLLTALSGLALLDH---------GKQAHCHVLRRELPFYAVLQNSLIDMYSKCG 302

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE-RPDGYTFSMIL 153
            L YA ++FD +P+RT  ++N M+ GY K+G   E L L R +      +PD  T   +L
Sbjct: 303 NLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVL 362

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCD--VKADDVLYTALVDSYVKGGKTSYA 205
             S C    +    + G  ++  ++  +  +K D   Y  +VD   + G+   A
Sbjct: 363 --SGCSHGKM---EDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEA 411


>gi|359495599|ref|XP_003635033.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 177/498 (35%), Positives = 266/498 (53%), Gaps = 53/498 (10%)

Query: 37  DSLSNPLTATSLP-----SALQH--YINSDTPFYGLKIHAHITKTGVKPNTNISIKLLIL 89
           +S SNP +  SL      S LQ   +IN   P     IHA + + G   +  +  +LL  
Sbjct: 36  NSNSNPKSLKSLDQKQIISLLQRSRHINQVLP-----IHAQLIRNGHSQDPFMVFELLRS 90

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149
             KC A+ YA ++F       +  Y  +I G++ +G   E++ L  +++     PD Y  
Sbjct: 91  CSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLM 150

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVF 209
           + ILKA   C S + L    GR VH++ LK    ++ ++   +++ Y K G+   AR VF
Sbjct: 151 ASILKA---CGSQLALRE--GREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVF 205

Query: 210 DMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARK-- 267
           + M E +V+ ST MIS +  QG VE+A  +F +   KD V + AMI+G+  + ET R   
Sbjct: 206 EEMPE-DVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGFVRNEETNRALE 264

Query: 268 ----------------------------ALE----VHCQLIKNVFFEDVKLGSALVDMYA 295
                                       ALE    VH  + K     ++ +G+AL++MY+
Sbjct: 265 AFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMYS 324

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           +CG ID+A+ VFD M+ ++V T+ +MI G   NG   QA+ELF +M    ++P  VTF+G
Sbjct: 325 RCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVG 384

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            L+AC H GLVD G EIF SM RDY ++P++EHY CMVDLLGR G LE+A   +  M   
Sbjct: 385 VLNACSHGGLVDFGFEIFHSMARDYRVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMT 444

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
           P+  +   LLS+C++H ++E+    A E+      D  G YV LS+  A++GKW    ++
Sbjct: 445 PDHIMLGTLLSACKMHKNLELGEQVAKELEDRGQAD-SGTYVLLSHVYASSGKWKEAAQV 503

Query: 476 REKMKLRGVLKDTGCSWV 493
           R KMK  G+ K+ GCS +
Sbjct: 504 RAKMKEAGMQKEPGCSSI 521


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  282 bits (721), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 165/486 (33%), Positives = 261/486 (53%), Gaps = 33/486 (6%)

Query: 18   RHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVK 77
            R   L+P   +FP  +++  +L + ++                   G   H      G +
Sbjct: 1134 RKLGLIPTRSSFPCTIKSCSALCDLVS-------------------GRMSHQQAFVFGFE 1174

Query: 78   PNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL 137
             +  +S  L+ ++ KCG LK A  +FDE+P R + ++  MI GY++N Q + +L L +  
Sbjct: 1175 TDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKDF 1234

Query: 138  VSS-GERPDGY-----TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTA 191
            +    E  DG      +  M+   S C R +    + +   VH  ++K        +   
Sbjct: 1235 LEEETEVEDGNNVPLDSVVMVSVLSACSRVS---GKGITEGVHGFVVKKGFDGSIGVGNT 1291

Query: 192  LVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVY 251
            L+D+Y K G+   ++ VFD M EK+ I   SMI+ +   G   +A E+F   V    V Y
Sbjct: 1292 LMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRY 1351

Query: 252  NAMIEGYSISIETARKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVF 307
            NA+     +       AL     +H Q+IK     +V +G++++DMY KCG+++ A++ F
Sbjct: 1352 NAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTF 1411

Query: 308  DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367
            D M++KNV +WT+M+ GYG +G   +AL++F  M    V+PNY+TF+  L+AC HAGLV+
Sbjct: 1412 DRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVE 1471

Query: 368  KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
            +G   F +M+  Y ++P +EHY CMVDL GRAG L +A   +  M  KP+  VW +LL +
Sbjct: 1472 EGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGA 1531

Query: 428  CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487
            CR+H +V++  IAA ++F+L+  D  G YV LSN  A AG+W  V  +R  MK R ++K 
Sbjct: 1532 CRIHKNVDLGEIAAQKLFELDP-DNCGYYVLLSNLYADAGRWADVERMRMLMKNRQLVKP 1590

Query: 488  TGCSWV 493
             G S V
Sbjct: 1591 PGFSLV 1596



 Score =  204 bits (519), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 128/388 (32%), Positives = 197/388 (50%), Gaps = 41/388 (10%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IHA I ++G+  +  ++ KL+ L+   G + YA  +F ++       +N +I     NG
Sbjct: 45  QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTING 104

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             E++L L + +V  G   D +TF  ++KA T       L  +LG++VH  ++K     D
Sbjct: 105 LSEQALMLYKNMVCQGIAADKFTFPFVIKACTNF-----LSIDLGKVVHGSLIKYGFSGD 159

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             +   L+D Y K G T +A  VF+ M  +NV+  T++ISG +S G +++A  IF +   
Sbjct: 160 VFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPS 219

Query: 246 KDIVVYNAMIEGYSISIETARKALE----------------------------------- 270
           K++V + AMI GY I  +   +ALE                                   
Sbjct: 220 KNVVSWTAMINGY-IRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRG 278

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           +H   IKN     V LG+AL+DMY+KCG I DA  VF+ M +K++ TW SMI   G +G 
Sbjct: 279 IHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGL 338

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
             +AL LF  M+   V+P+ +TF+G L AC H   V +G   F  M + Y + P  EHY 
Sbjct: 339 GQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYE 398

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           CM +L  R+ +L++A K   E+    NS
Sbjct: 399 CMTELYARSNNLDEAFKSTKEVGSLANS 426



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 81/302 (26%), Positives = 138/302 (45%), Gaps = 50/302 (16%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           R +HA+I++  +  D +L   L+  Y   G+ +YA ++F  +          +I      
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 231 GFVEDAEEIFRKTV----EKDIVVYNAMIEGYS--ISIETARKALEVHCQLIKNVFFEDV 284
           G  E A  +++  V      D   +  +I+  +  +SI+  +    VH  LIK  F  DV
Sbjct: 104 GLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKV---VHGSLIKYGFSGDV 160

Query: 285 KLGSALVDMYAKCGK-------------------------------IDDARRVFDHMQQK 313
            + + L+D Y KCG                                + +ARR+FD +  K
Sbjct: 161 FVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSK 220

Query: 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF 373
           NV +WT+MI+GY +N  P +ALELF  MQ   + PN  T +  + AC   G++  GR I 
Sbjct: 221 NVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGI- 279

Query: 374 ESMERDYSMKPKME----HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCR 429
                DY++K  +E        ++D+  + GS++ A++    MP K +   W ++++S  
Sbjct: 280 ----HDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRK-SLPTWNSMITSLG 334

Query: 430 LH 431
           +H
Sbjct: 335 VH 336



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/276 (22%), Positives = 120/276 (43%), Gaps = 42/276 (15%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKY------------------------- 98
           G  +H  + K G   +  +   L+  + KCG  ++                         
Sbjct: 144 GKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLIS 203

Query: 99  ------AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
                 A ++FDE+P + + ++  MI GY++N Q EE+L L +++ +    P+ YT   +
Sbjct: 204 CGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSL 263

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           +KA  C    +     LGR +H   +K  ++    L TAL+D Y K G    A  VF+ M
Sbjct: 264 IKA--CTEMGI---LTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETM 318

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKA 268
             K++    SMI+     G  ++A  +F    R  V+ D + +  ++    + I+  ++ 
Sbjct: 319 PRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCA-CVHIKNVKEG 377

Query: 269 LEVHCQLIKNVFFEDV-KLGSALVDMYAKCGKIDDA 303
                ++ ++     + +    + ++YA+   +D+A
Sbjct: 378 CAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 153/434 (35%), Positives = 259/434 (59%), Gaps = 12/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IHA+  K G+  +  +   L+ ++ K  ++KY   +FD++P + + ++  +IAG+ +
Sbjct: 438 GMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQ 497

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG    +L L R++   G   D    S IL A     S + L  ++ + +H+ I++  + 
Sbjct: 498 NGSHSRALELFREVQLEGIDLDVMMISSILLAC----SGLKLISSV-KEIHSYIIRKGL- 551

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR-- 241
           +D VL   +VD Y + G   YA  +F+++  K+V+  TSMIS ++  G   +A E+F   
Sbjct: 552 SDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLM 611

Query: 242 --KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               VE D +   + I   + S+   +K  E+H  LI+  F  +  L S LVDMYA+CG 
Sbjct: 612 KETGVEPDSISLVS-ILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDMYARCGT 670

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ++ +R VF+ ++ K++  WTSMI+ YG +G    A++LF  M++  + P+++ F+  L A
Sbjct: 671 LEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFVAVLYA 730

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H+GL+++GR   ESM+ +Y ++P  EHY C+VDLLGRA  LE+A +FV  M  +P ++
Sbjct: 731 CSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEVEPTAE 790

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW ALL +C++H + E+  IAA ++ +++  + PG YV +SN  AA  +W  V E+R +M
Sbjct: 791 VWCALLGACQIHSNKELGEIAAQKLLEMDP-ENPGNYVLVSNVYAAERRWKDVEEVRMRM 849

Query: 480 KLRGVLKDTGCSWV 493
           K  G+ K+ GCSW+
Sbjct: 850 KASGLKKNPGCSWI 863



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 207/390 (53%), Gaps = 15/390 (3%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +  +ALQ   +S     G+ IHA + K+    N  ++  L+ ++ + G +  A  +F  +
Sbjct: 320 TFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNM 379

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
                 ++N M++G+++NG   E+L    ++  +G++PD      I+ AS   RS   L 
Sbjct: 380 DDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASA--RSGNTLN 437

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
              G  +HA  +K  + +D  +  +LVD Y K     Y   +FD M +K+V+  T++I+G
Sbjct: 438 ---GMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAG 494

Query: 227 FMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
               G    A E+FR+     ++ D+++ ++++   S  ++      E+H  +I+     
Sbjct: 495 HAQNGSHSRALELFREVQLEGIDLDVMMISSILLACS-GLKLISSVKEIHSYIIRKG-LS 552

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           D+ L + +VD+Y +CG +D A R+F+ ++ K+V +WTSMI  Y  NG  N+ALELF +M+
Sbjct: 553 DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMK 612

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD-YSMKPKMEHYACMVDLLGRAGS 401
           E  V+P+ ++ +  LSA      + KG+EI   + R  + ++  +   + +VD+  R G+
Sbjct: 613 ETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLA--STLVDMYARCGT 670

Query: 402 LEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           LE++ + V       +  +W +++++  +H
Sbjct: 671 LEKS-RNVFNFIRNKDLVLWTSMINAYGMH 699



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 184/362 (50%), Gaps = 21/362 (5%)

Query: 64  GLKIHAH-ITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G ++HAH IT   +  +  +S +L+ ++ KCG L  A ++FD +P +T+  +N MI  Y+
Sbjct: 133 GQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYV 192

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            NG+   SL L R++  SG   D  TF  ILKA    +      R  G  VH   +K   
Sbjct: 193 TNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKD-----RRCGAEVHGLAIKEGY 247

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEK-NVICSTSMISGFMSQGFVEDAEEIF- 240
            +   +  ++V  Y K    + AR +FD M EK +V+   SMIS + S G   +A  +F 
Sbjct: 248 VSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFG 307

Query: 241 ---RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
              + ++  +   + A ++    S    ++ + +H  ++K+ ++ +V + +AL+ MYA+ 
Sbjct: 308 EMQKASLAPNTYTFVAALQACEDS-SFIKQGMFIHATVLKSSYYINVFVANALIAMYARF 366

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           GK+ +A  +F +M   +  +W SM+ G+ +NG  ++AL+ +  M++   +P+ V  +  +
Sbjct: 367 GKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISII 426

Query: 358 SACGHAGLVDKGREIFESMERDYSMK----PKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           +A   +G    G +I       Y+MK      ++    +VD+  +  S++       +MP
Sbjct: 427 AASARSGNTLNGMQI-----HAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMP 481

Query: 414 EK 415
           +K
Sbjct: 482 DK 483



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 20/205 (9%)

Query: 256 EGYSISIET--ARKAL----EVHCQLI-KNVFFEDVKLGSALVDMYAKCGKIDDARRVFD 308
           E YS  +E   ++KAL    +VH  +I  N  F  V L + LV MY KCG + DA ++FD
Sbjct: 115 EAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFD 174

Query: 309 HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDK 368
            M  K +FTW +MI  Y  NG P  +LEL+  M+   +  +  TF   L ACG       
Sbjct: 175 GMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRC 234

Query: 369 GREIFE-SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS- 426
           G E+   +++  Y     + +   +V +  +   L  A +    MPEK +   W +++S 
Sbjct: 235 GAEVHGLAIKEGYVSIVFVAN--SIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISA 292

Query: 427 ---------SCRLHDDVEMANIAAN 442
                    + RL  +++ A++A N
Sbjct: 293 YSSNGQSIEALRLFGEMQKASLAPN 317


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 162/489 (33%), Positives = 263/489 (53%), Gaps = 25/489 (5%)

Query: 24  PPNQTFPPKLQNYDSLSNPLTATSLPSALQH-YINSDT---------------PFYGLKI 67
           PP Q++   +  Y      L A  +  +LQ  Y++ D                   G+++
Sbjct: 303 PPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQL 362

Query: 68  HAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV 127
           H    K G+  N  ++  +L ++ KCGAL  A  +FD++ +R   ++N +IA + +N ++
Sbjct: 363 HGLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEI 422

Query: 128 EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV 187
            ++LSL   ++ S   PD +T+  ++KA   C     L  N G  +H +I+K  +  D  
Sbjct: 423 VKTLSLFVSMLRSTMEPDDFTYGSVVKA---CAGQQAL--NYGMEIHGRIVKSGMGLDWF 477

Query: 188 LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKD 247
           + +ALVD Y K G    A  + D + EK  +   S+ISGF SQ   E+A+  F + +E  
Sbjct: 478 VGSALVDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMG 537

Query: 248 IVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDAR 304
           ++  N   A +     ++ T     ++H Q++K     DV + S LVDMY+KCG + D+R
Sbjct: 538 VIPDNFTYATVLDVCANMATIELGKQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSR 597

Query: 305 RVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG 364
            +F+   +++  TW++MI  Y  +G+  QA++LF  MQ   V+PN+  F+  L AC H G
Sbjct: 598 LMFEKTPKRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACAHMG 657

Query: 365 LVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAAL 424
            VDKG   F+ M+  Y + P MEHY+CMVDLLGR+  + +ALK +  M  + +  +W  L
Sbjct: 658 YVDKGLHYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQVNEALKLIESMHFEADDVIWRTL 717

Query: 425 LSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGV 484
           LS+C++  +VE+A  A N + +L+  D   AYV L+N  A  G W  V ++R  MK   +
Sbjct: 718 LSNCKMQGNVEVAEKAFNSLLQLDPQD-SSAYVLLANVYANVGMWGEVAKIRSIMKNCKL 776

Query: 485 LKDTGCSWV 493
            K+ GCSW+
Sbjct: 777 KKEPGCSWI 785



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 194/392 (49%), Gaps = 26/392 (6%)

Query: 52  LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLIL-HLKCGALKYAGQMFDELPQRT 110
           +Q Y  S    Y  K+   +    V     IS   +I  + + G + +A  +FD +P+R 
Sbjct: 48  VQFYCKSSNMNYAFKVFDRMPHRDV-----ISWNTMIFGYAEIGNMGFAQSLFDTMPERD 102

Query: 111 LSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLG 170
           + ++N +++ YL NG   +S+ +  ++ S     D  TFS++LKA +           LG
Sbjct: 103 VVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFSVVLKACSGIED-----YGLG 157

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
             VH   ++   + D V  +ALVD Y K  K   A  +F  M E+N++C +++I+G++  
Sbjct: 158 LQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQN 217

Query: 231 GFVEDAEEIFRKTVEKDIVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG 287
               +  ++F+  ++  + V     A +      +   +   ++H   +K+ F  D  +G
Sbjct: 218 DRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIG 277

Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347
           +A +DMYAKC ++ DA +VF+ +      ++ ++I GY +     +ALE+F  +Q   + 
Sbjct: 278 TATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQRTYLS 337

Query: 348 PNYVTFLGALSACGHAGLVDKGREIFESME-RDYSMKPKMEHYAC----MVDLLGRAGSL 402
            + ++  GAL+AC     V KG    E ++    ++K  +    C    ++D+ G+ G+L
Sbjct: 338 FDEISLSGALTACS----VIKGH--LEGIQLHGLAVKCGLGFNICVANTILDMYGKCGAL 391

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDV 434
            +A     +M E+ ++  W A++++   ++++
Sbjct: 392 VEACTIFDDM-ERRDAVSWNAIIAAHEQNEEI 422



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 146/335 (43%), Gaps = 47/335 (14%)

Query: 147 YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR 206
           +TFS IL+  +  ++  P     G+  HAQ++         +   LV  Y K    +YA 
Sbjct: 7   FTFSHILQKCSNLKALNP-----GKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAF 61

Query: 207 IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY-------- 258
            VFD M  ++VI   +MI G+   G +  A+ +F    E+D+V +N+++  Y        
Sbjct: 62  KVFDRMPHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRK 121

Query: 259 SI--------------------------SIETARKALEVHCQLIKNVFFEDVKLGSALVD 292
           SI                           IE     L+VHC  I+  F  DV  GSALVD
Sbjct: 122 SIEIFVRMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVD 181

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           MY+KC K+D A R+F  M ++N+  W+++I GY +N    + L+LF  M +  +  +  T
Sbjct: 182 MYSKCKKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQST 241

Query: 353 FLGALSACGHAGLVDKGREIF-ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
           +     +C        G ++   +++ D++    +      +D+  +   +  A K    
Sbjct: 242 YASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIG--TATLDMYAKCDRMSDAWKVFNT 299

Query: 412 MPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446
           +P  P     A ++   R     +   + A EIF+
Sbjct: 300 LPNPPRQSYNAIIVGYAR-----QDQGLKALEIFQ 329


>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
          Length = 1113

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 153/439 (34%), Positives = 259/439 (58%), Gaps = 18/439 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKC---GALKYAGQMFDELPQRTLSAYNYMIAG 120
           G ++H+   ++G+  +   S  L+ ++ KC   G++    ++FD +   ++ ++  +I G
Sbjct: 288 GKQLHSWAIRSGLVDDVECS--LVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITG 345

Query: 121 YLKNGQV-EESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
           Y+KN  +  E+++L  ++++ G   P+ +TFS   KA      N+  PR +G+ V  Q  
Sbjct: 346 YMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKAC----GNLSDPR-VGKQVLGQAF 400

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
           K  + ++  +  +++  +VK  +   A+  F+ + EKN++   + + G       E A +
Sbjct: 401 KRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFK 460

Query: 239 IFRKTVEKDIVV----YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
           +  +  E+++ V    + +++ G + ++ + RK  ++H Q++K     +  + +AL+ MY
Sbjct: 461 LLSEITERELGVSAFTFASLLSGVA-NVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMY 519

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           +KCG ID A RVF+ M+ +NV +WTSMI G+ K+G   + LE F  M E  V+PN VT++
Sbjct: 520 SKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYV 579

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             LSAC H GLV +G   F SM  D+ +KPKMEHYACMVDLL RAG L  A +F+  MP 
Sbjct: 580 AILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPF 639

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
           + +  VW   L +CR+H + E+  +AA +I +L+ N+ P AY+ LSN  A AGKW+  TE
Sbjct: 640 QADVLVWRTFLGACRVHSNTELGKLAARKILELDPNE-PAAYIQLSNIYACAGKWEESTE 698

Query: 475 LREKMKLRGVLKDTGCSWV 493
           +R KMK R ++K+ GCSW+
Sbjct: 699 MRRKMKERNLVKEGGCSWI 717



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 127/505 (25%), Positives = 234/505 (46%), Gaps = 60/505 (11%)

Query: 42  PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQ 101
           P+ + +  S L+  I +     G  +HA + +  ++P++ +   L+ L+ K G    A  
Sbjct: 59  PMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAED 118

Query: 102 MFDEL---PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
           +F+ +    +R + +++ M+A Y  NG+  +++ +  + +  G  P+ Y ++ +++A  C
Sbjct: 119 VFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRA--C 176

Query: 159 CRSNVPLPRNLGRMVHAQILKC-DVKADDVLYTALVDSYVKGGKT-SYARIVFDMMLEKN 216
             S+      +GR+    ++K    ++D  +  +L+D +VKG  +   A  VFD M E N
Sbjct: 177 SNSDFV---GVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELN 233

Query: 217 VICSTSMISGFMSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSISIETARKALEVH 272
           V+  T MI+  M  GF  +A   F   V    E D    +++    +  +E      ++H
Sbjct: 234 VVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACA-ELENLSLGKQLH 292

Query: 273 CQLIKNVFFEDVKLGSALVDMYAKC---GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
              I++   +DV+   +LVDMYAKC   G +DD R+VFD M+  +V +WT++I GY KN 
Sbjct: 293 SWAIRSGLVDDVE--CSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNC 350

Query: 330 N-PNQALELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREIF-------------- 373
           N   +A+ LF  M+ +  V+PN+ TF  A  ACG+      G+++               
Sbjct: 351 NLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSV 410

Query: 374 --------------ESMERDY-SMKPK-MEHYACMVDLLGRAGSLEQALKFVLEMPEKP- 416
                         E  +R + S+  K +  Y   +D   R  + EQA K + E+ E+  
Sbjct: 411 ANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITEREL 470

Query: 417 --NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
             ++  +A+LLS       +       +++ KL  +       AL +  +  G  D+ + 
Sbjct: 471 GVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASR 530

Query: 475 LREKMKLRGVLKDTGCSWVGTESGL 499
           +   M+ R V+     SW    +G 
Sbjct: 531 VFNFMENRNVI-----SWTSMITGF 550



 Score =  104 bits (260), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 81/274 (29%), Positives = 142/274 (51%), Gaps = 20/274 (7%)

Query: 111 LSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERP-DGYTFSMILKASTCCRSNVPLPRNL 169
           ++  + +I  +L  G +  ++S +  +   G RP D  TFS +LK  +C R+       L
Sbjct: 26  INVADRLILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLK--SCIRAR---DFRL 80

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML---EKNVICSTSMISG 226
           G++VHA++++ D++ D VLY +L+  Y K G ++ A  VF+ M    +++V+  ++M++ 
Sbjct: 81  GKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMAC 140

Query: 227 FMSQGFVEDAEEIFRKTVEKDIV----VYNAMIEGYSIS--IETARKALEVHCQLIKNVF 280
           + + G   DA ++F + +E  +V     Y A+I   S S  +   R  L     L+K   
Sbjct: 141 YGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGF---LMKTGH 197

Query: 281 FE-DVKLGSALVDMYAKC-GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
           FE DV +G +L+DM+ K     ++A +VFD M + NV TWT MI    + G P +A+  F
Sbjct: 198 FESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFF 257

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
             M     + +  T     SAC     +  G+++
Sbjct: 258 LDMVLSGFESDKFTLSSVFSACAELENLSLGKQL 291


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 152/436 (34%), Positives = 253/436 (58%), Gaps = 13/436 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH    K+G +  + +    + ++ KCG +  A Q+F+++P R L ++N MIAG+  
Sbjct: 124 GMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTH 183

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD-- 181
            G   +SL L +++   GE PD +TF+  LKA       +   R  G  +HA ++     
Sbjct: 184 EGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKAC----GALGAIRG-GTQIHASLITRGFP 238

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +   +++ +A+VD Y K G    A+ VFD + +KN+I  +++I GF  +G + +A ++FR
Sbjct: 239 ISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFR 298

Query: 242 KTVEK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           +  E     D  V + M+ G    +    +  ++HC ++K     D+ + ++++DMY KC
Sbjct: 299 QLRESVSNVDGFVLSIMM-GVFADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKC 357

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G  ++A R+F  MQ +NV +WT MI GYGK+G   +A+ LF  MQ   ++ + V +L  L
Sbjct: 358 GLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALL 417

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           SAC H+GL+ + +E F  +  ++ MKP +EHYACMVD+LGRAG L++A   +  M  KPN
Sbjct: 418 SACSHSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPN 477

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
             +W  LLS+CR+H ++E+       +F+++  D P  YV +SN  A AG W     +R+
Sbjct: 478 EGIWQTLLSACRVHGNLEIGREVGEILFRMDT-DNPVNYVMMSNIYAEAGYWKECERVRK 536

Query: 478 KMKLRGVLKDTGCSWV 493
            +K +G+ K+ G SWV
Sbjct: 537 LVKAKGLKKEAGQSWV 552



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 82/315 (26%), Positives = 166/315 (52%), Gaps = 12/315 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           GL++HA     G   +  ++  L+ ++ KC  +  A  +FD + +R + ++  ++ GYL+
Sbjct: 23  GLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQ 82

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G  + SL+L+ ++  SG +P+ +TFS  LKA       + +  N G  +H   +K   +
Sbjct: 83  EGNAKGSLALLCEMGYSGVKPNEFTFSTSLKAC----GALGVVEN-GMQIHGMCVKSGFE 137

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
              V+  A +D Y K G+   A  VF+ M  +N++   +MI+G   +G    +  +F++ 
Sbjct: 138 WVSVVGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRM 197

Query: 244 VEK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK--LGSALVDMYAKC 297
             +    D   + + ++    ++   R   ++H  LI   F   ++  + SA+VD+YAKC
Sbjct: 198 QGQGEVPDEFTFTSTLKACG-ALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKC 256

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G + +A++VFD ++QKN+ +W+++I G+ + GN  +A++LF  ++E     +       +
Sbjct: 257 GYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMM 316

Query: 358 SACGHAGLVDKGREI 372
                  LV++G+++
Sbjct: 317 GVFADLALVEQGKQM 331



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/263 (28%), Positives = 134/263 (50%), Gaps = 7/263 (2%)

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           G  VHA  +      D ++   L+D Y K  +   A  VFD MLE+NV+  T+++ G++ 
Sbjct: 23  GLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQ 82

Query: 230 QGFVEDAE----EIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
           +G  + +     E+    V+ +   ++  ++    ++      +++H   +K+ F     
Sbjct: 83  EGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACG-ALGVVENGMQIHGMCVKSGFEWVSV 141

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           +G+A +DMY+KCG+I  A +VF+ M  +N+ +W +MI G+   GN  ++L LF  MQ   
Sbjct: 142 VGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQG 201

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVDLLGRAGSLEQ 404
             P+  TF   L ACG  G +  G +I  S+  R + +  +    + +VDL  + G L +
Sbjct: 202 EVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFE 261

Query: 405 ALKFVLEMPEKPNSDVWAALLSS 427
           A K V +  E+ N   W+AL+  
Sbjct: 262 AQK-VFDRIEQKNLISWSALIQG 283



 Score = 88.6 bits (218), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 87/165 (52%), Gaps = 10/165 (6%)

Query: 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
           + L+VH   +   F  D+ + + L+DMY KC ++D A  VFD M ++NV +WT+++ GY 
Sbjct: 22  QGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYL 81

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM 386
           + GN   +L L C M    V+PN  TF  +L ACG  G+V+ G +I         +K   
Sbjct: 82  QEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQI-----HGMCVKSGF 136

Query: 387 EHYACM----VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
           E  + +    +D+  + G +  A +   +MP + N   W A+++ 
Sbjct: 137 EWVSVVGNATIDMYSKCGRIGMAEQVFNKMPFR-NLVSWNAMIAG 180


>gi|297847366|ref|XP_002891564.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297337406|gb|EFH67823.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 596

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 160/496 (32%), Positives = 257/496 (51%), Gaps = 30/496 (6%)

Query: 8   RSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKI 67
           R S  S    R   +VP   TFPP L+    L +                   PF   + 
Sbjct: 86  RLSFLSYRQMRRNGVVPSRHTFPPLLKAVFKLRDA-----------------NPF---QF 125

Query: 68  HAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV 127
           HAHI K G   +  +   L+  +  CG  ++  ++FD    + + ++  MI G+++N   
Sbjct: 126 HAHILKFGFDSDLFVRNSLISGYSNCGLFEFGSRVFDGTEDKDVVSWTAMIDGFVRNDSS 185

Query: 128 EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD-VKADD 186
            E+++   ++  SG   +  T   +LKA+             GR +H   L+   V+ D 
Sbjct: 186 LEAMTYFVEMKRSGVAANEMTVVSVLKATRKAEDV-----RFGRSIHGFYLEAGRVRCDV 240

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
            + ++LVD Y K G    A+ VFD M  +NV+  T++I+G++     E    +F + ++ 
Sbjct: 241 FIGSSLVDMYGKCGCYDDAQKVFDEMPSRNVVTWTALIAGYVQGRCFEKGMFVFEEMLKS 300

Query: 247 DIVVYNAMIEGY---SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
           D+      +         +    +   VHC +IKN    +  +G+ L+D YAKCG +++A
Sbjct: 301 DVAPNEKTLSSVLSACAHVGALHRGRRVHCYVIKNSIEINTTVGTTLIDFYAKCGCLEEA 360

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
             VF+ +++KNV+TWT+MI+G+  +G    A++LF  M    V PN VTF+  LSAC H 
Sbjct: 361 ILVFERLREKNVYTWTAMINGFAAHGYAIGAVDLFHTMLSSHVSPNEVTFIVVLSACAHG 420

Query: 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA 423
           GLV++GR +F SM+  ++++PK +HYACMVDL GR G LE+A   +  MP +P + VW A
Sbjct: 421 GLVEEGRRLFLSMKERFNLEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNAVWGA 480

Query: 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483
           L  SC +H D E+   AA+ + KL  +   G Y  L+N  + +  WD V  +R++MK + 
Sbjct: 481 LFGSCLIHKDYELGKYAASRVIKLQPS-HSGRYTLLANLYSESQNWDDVARVRKQMKDQQ 539

Query: 484 VLKDTGCSWVGTESGL 499
           V+K  GCSW+  +  L
Sbjct: 540 VVKSPGCSWIEVKGKL 555


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 159/463 (34%), Positives = 268/463 (57%), Gaps = 21/463 (4%)

Query: 40  SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKC---GAL 96
           S+  T +S+ SA     N      G ++H+   ++G+  +   S  L+ ++ KC   G++
Sbjct: 267 SDKFTLSSVFSACAELENLS---LGKQLHSWAIRSGLVDDVECS--LVDMYAKCSADGSV 321

Query: 97  KYAGQMFDELPQRTLSAYNYMIAGYLKNGQVE-ESLSLVRKLVSSGE-RPDGYTFSMILK 154
               ++FD +   ++ ++  +I GY+KN  +  E+++L  ++++ G   P+ +TFS   K
Sbjct: 322 DDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFK 381

Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE 214
           A      N+  PR +G+ V  Q  K  + ++  +  +++  +VK  +   A+  F+ + E
Sbjct: 382 AC----GNLSDPR-VGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSE 436

Query: 215 KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV----YNAMIEGYSISIETARKALE 270
           KN++   + + G       E A ++  +  E+++ V    + +++ G + ++ + RK  +
Sbjct: 437 KNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVA-NVGSIRKGEQ 495

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           +H Q++K     +  + +AL+ MY+KCG ID A RVF+ M+ +NV +WTSMI G+ K+G 
Sbjct: 496 IHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGF 555

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
             + LE F  M E  V+PN VT++  LSAC H GLV +G   F SM  D+ +KPKMEHYA
Sbjct: 556 AIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYA 615

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
           CMVDLL RAG L  A +F+  MP + +  VW   L +CR+H + E+  +AA +I +L+ N
Sbjct: 616 CMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPN 675

Query: 451 DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           + P AY+ LSN  A AGKW+  TE+R KMK R ++K+ GCSW+
Sbjct: 676 E-PAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWI 717



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 127/505 (25%), Positives = 234/505 (46%), Gaps = 60/505 (11%)

Query: 42  PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQ 101
           P+ + +  S L+  I +     G  +HA + +  ++P++ +   L+ L+ K G    A  
Sbjct: 59  PMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAED 118

Query: 102 MFDELP---QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
           +F+ +    +R + +++ M+A Y  NG+  +++ +  + +  G  P+ Y ++ +++A  C
Sbjct: 119 VFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRA--C 176

Query: 159 CRSNVPLPRNLGRMVHAQILKC-DVKADDVLYTALVDSYVKGGKT-SYARIVFDMMLEKN 216
             S+      +GR+    ++K    ++D  +  +L+D +VKG  +   A  VFD M E N
Sbjct: 177 SNSDFV---GVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELN 233

Query: 217 VICSTSMISGFMSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSISIETARKALEVH 272
           V+  T MI+  M  GF  +A   F   V    E D    +++    +  +E      ++H
Sbjct: 234 VVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACA-ELENLSLGKQLH 292

Query: 273 CQLIKNVFFEDVKLGSALVDMYAKC---GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
              I++   +DV+   +LVDMYAKC   G +DD R+VFD M+  +V +WT++I GY KN 
Sbjct: 293 SWAIRSGLVDDVE--CSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNC 350

Query: 330 N-PNQALELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREIF-------------- 373
           N   +A+ LF  M+ +  V+PN+ TF  A  ACG+      G+++               
Sbjct: 351 NLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSV 410

Query: 374 --------------ESMERDY-SMKPK-MEHYACMVDLLGRAGSLEQALKFVLEMPEKP- 416
                         E  +R + S+  K +  Y   +D   R  + EQA K + E+ E+  
Sbjct: 411 ANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITEREL 470

Query: 417 --NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
             ++  +A+LLS       +       +++ KL  +       AL +  +  G  D+ + 
Sbjct: 471 GVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASR 530

Query: 475 LREKMKLRGVLKDTGCSWVGTESGL 499
           +   M+ R V+     SW    +G 
Sbjct: 531 VFNFMENRNVI-----SWTSMITGF 550



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 92/327 (28%), Positives = 165/327 (50%), Gaps = 31/327 (9%)

Query: 117 MIAGYLKNGQVEESLSLVRKLVSSGERP-DGYTFSMILKASTCCRSNVPLPRNLGRMVHA 175
           +I  +L  G +  ++S +  +   G RP D  TFS +LK  +C R+       LG++VHA
Sbjct: 32  LILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLK--SCIRAR---DFRLGKLVHA 86

Query: 176 QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML---EKNVICSTSMISGFMSQGF 232
           ++++ D++ D VLY +L+  Y K G ++ A  VF+ M    +++V+  ++M++ + + G 
Sbjct: 87  RLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGR 146

Query: 233 VEDAEEIFRKTVEKDIV----VYNAMIEGYSIS--IETARKALEVHCQLIKNVFFE-DVK 285
             DA ++F + +E  +V     Y A+I   S S  +   R  L     L+K   FE DV 
Sbjct: 147 ELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGF---LMKTGHFESDVC 203

Query: 286 LGSALVDMYAKC-GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
           +G +L+DM+ K     ++A +VFD M + NV TWT MI    + G P +A+  F  M   
Sbjct: 204 VGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLS 263

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM-EHYAC-MVDLLGRA--- 399
             + +  T     SAC     +  G+++       ++++  + +   C +VD+  +    
Sbjct: 264 GFESDKFTLSSVFSACAELENLSLGKQL-----HSWAIRSGLVDDVECSLVDMYAKCSAD 318

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLS 426
           GS++   K V +  E  +   W AL++
Sbjct: 319 GSVDDCRK-VFDRMEDHSVMSWTALIT 344


>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
 gi|194688780|gb|ACF78474.1| unknown [Zea mays]
 gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
          Length = 695

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 162/439 (36%), Positives = 250/439 (56%), Gaps = 16/439 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRT-LSAYNYMIAGYL 122
           G+ IH    + G + +  ++  L++++ K G +  A ++FD     + ++ +N M++GY 
Sbjct: 125 GVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYA 184

Query: 123 KNGQVEESLSLVRKLV--SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
             G   ++L + R++       +PD +TF+ +LKA     S +   R  G  VHA +   
Sbjct: 185 HAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKAC----SGLGATRE-GAQVHAAMTAS 239

Query: 181 --DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
                ++ +L  ALVD YVK  +   A  VF+ +  KNVI  T+++ G   +G V +A E
Sbjct: 240 GFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALE 299

Query: 239 IFRK----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
           +FR+        D  V ++++ G         +  +VHC  IK+    DV  G+++VDMY
Sbjct: 300 LFRRFWRSGARPDSHVLSSVV-GVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMY 358

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
            KCG  D+A R+F  M+  NV +WT+M++G GK+G   +A+ LF  M+   V+P+ VT+L
Sbjct: 359 LKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYL 418

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             LSAC HAGLVD+ R  F  + RD +++PK EHYACMVDLLGRAG L +A   +  MP 
Sbjct: 419 ALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPM 478

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
           +P   VW  LLS+CR+H DV +   A + +  ++  D P  YV LSN LA AG+W    +
Sbjct: 479 EPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMD-GDNPVNYVTLSNVLAEAGEWRECHK 537

Query: 475 LREKMKLRGVLKDTGCSWV 493
           +R+ M+ RG+ K  GCSWV
Sbjct: 538 VRDAMRRRGLKKQGGCSWV 556



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 191/409 (46%), Gaps = 51/409 (12%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+++H  ITK G   +T +   L+ +++KCG L  A ++F  +  R + ++  ++ G+L+
Sbjct: 23  GVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLR 82

Query: 124 NGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +G     L L+ ++ ++ E  P+ YT S  LKA  CC   V      G  +H   ++   
Sbjct: 83  HGDATGCLRLLGEMRTASEAAPNEYTLSASLKA--CC---VVGDTAAGVGIHGLCVRAGY 137

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFD-MMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +  DV+ ++LV  Y KGG+   AR VFD   L   +    +M+SG+   G   DA  +FR
Sbjct: 138 QEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFR 197

Query: 242 KTV------EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVF--FEDVKLGSALVDM 293
           +        + D   + ++++  S  +   R+  +VH  +  + F    +  L  ALVDM
Sbjct: 198 EMRRHEGQHQPDEFTFASLLKACS-GLGATREGAQVHAAMTASGFSTASNAILAGALVDM 256

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           Y KC ++  A +VF+ +++KNV  WT+++ G+ + G   +ALELF        +P+    
Sbjct: 257 YVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVL 316

Query: 354 LGALSACGHAGLVDKGREIF-------------------------------ESMERDYSM 382
              +       LV++GR++                                E M R+   
Sbjct: 317 SSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMR- 375

Query: 383 KPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSC 428
            P +  +  MV+ LG+ G   +A+    EM     +P+   + ALLS+C
Sbjct: 376 APNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSAC 424



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 54/96 (56%), Gaps = 1/96 (1%)

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
           R  +++H  + K  F  D  LG+ L+DMY KCG++D A  VF  M+ +NV +WT+++ G+
Sbjct: 21  RGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEVFGGMRDRNVVSWTALMVGF 80

Query: 326 GKNGNPNQALELFCMMQECC-VQPNYVTFLGALSAC 360
            ++G+    L L   M+      PN  T   +L AC
Sbjct: 81  LRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKAC 116


>gi|147841045|emb|CAN68552.1| hypothetical protein VITISV_014227 [Vitis vinifera]
          Length = 1309

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 154/435 (35%), Positives = 243/435 (55%), Gaps = 9/435 (2%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++HA  +  G+  N  ++ KL+  +    AL  A  +FD +  R   +++ M+ G+ K G
Sbjct: 80  QVHAQASVHGMLENIVVANKLIYFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVG 139

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
                    R+L+  G RPD YT   +++A   CR    L   +GR++H  + K  +  D
Sbjct: 140 DYINCFGTFRELIRCGARPDNYTLPFVIRA---CRDLKNL--QMGRLIHHIVYKFGLDLD 194

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             +  ALVD YVK  +   AR +FD M E++++  T MI G+   G   ++  +F K  E
Sbjct: 195 HFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMRE 254

Query: 246 KDIV---VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
           + +V   V    +      +    KA  +   + +  F  DV LG+A++DMYAKCG ++ 
Sbjct: 255 EGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVES 314

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           AR +FD M++KNV +W++MI  YG +G   +AL+LF MM    + P+ +T    L AC H
Sbjct: 315 AREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLSSGMLPDKITLASLLYACSH 374

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
           AGLV++G   F SM  DYS++  ++HY C+VDLLGRAG L++ALK +  M  + +  +W 
Sbjct: 375 AGLVEEGLRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWG 434

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
           A L +CR H DV +A  AA  + +L + + PG YV LSN  A AG+W+ V ++R+ M  R
Sbjct: 435 AFLGACRTHKDVVLAEKAATSLLELQSQN-PGHYVLLSNIYANAGRWEDVAKIRDLMSQR 493

Query: 483 GVLKDTGCSWVGTES 497
            + K  G +W+  ++
Sbjct: 494 RLKKTPGWTWIEVDN 508



 Score =  277 bits (709), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 150/435 (34%), Positives = 240/435 (55%), Gaps = 9/435 (2%)

Query: 66   KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
            ++H   +  G+  N  ++ KL+  +    AL  A  +FD +  R   +++ M+ G+ K G
Sbjct: 756  QVHXQASVHGMLQNLIVANKLVXFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGFAKVG 815

Query: 126  QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
                     R+L+  G RPD YT   +++A   CR    L   +GR++H  + K  +  D
Sbjct: 816  DYMNCFGTFRELIRCGARPDNYTLPFVIRA---CRDLKNL--QMGRLIHHIVYKFGLDLD 870

Query: 186  DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
              +  ALVD Y K  +   AR +FD M E++++  T MI G+   G   ++  +F K  E
Sbjct: 871  HFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAECGNANESLVLFDKMRE 930

Query: 246  KDIV---VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
            + +V   V    +      +    KA  +   + +  F  DV LG+A++DM+AKCG ++ 
Sbjct: 931  EGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVES 990

Query: 303  ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
            AR +FD M++KNV +W++MI  YG +G   +AL+LF MM    + PN +T +  L AC H
Sbjct: 991  AREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSH 1050

Query: 363  AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
            AGLV++G   F  M  DYS++  ++HY C+VDLLGRAG L++ALK +  M  + +  +W 
Sbjct: 1051 AGLVEEGLRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWG 1110

Query: 423  ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
            A L +CR H DV +A  AA  + +L   + PG Y+ LSN  A AG+W+ V ++R+ M  R
Sbjct: 1111 AFLGACRTHKDVXLAEKAATSLLELQPQN-PGHYILLSNIYANAGRWEDVAKIRDLMSQR 1169

Query: 483  GVLKDTGCSWVGTES 497
             + K  G +W+  ++
Sbjct: 1170 RLKKIPGWTWIEVDN 1184



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 148/349 (42%), Gaps = 47/349 (13%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH  + K G+  +  +   L+ +++KC  ++ A  +FD++ +R L  +  MI GY +
Sbjct: 179 GRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAE 238

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G+  ESL L  K+   G  PD    +M+     C +       +  R++   I +   +
Sbjct: 239 CGKANESLVLFEKMREEGVVPD--KVAMVTVVFACAKLG---AMHKARIIDDYIQRKKFQ 293

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D +L TA++D Y K G    AR +FD M EKNVI  ++MI+ +   G            
Sbjct: 294 LDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHG------------ 341

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
                                 RKAL++   ++ +    D    ++L+   +  G +++ 
Sbjct: 342 --------------------QGRKALDLFPMMLSSGMLPDKITLASLLYACSHAGLVEEG 381

Query: 304 RRVF-----DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            R F     D+  + +V  +T ++D  G+ G  ++AL+L   M     +  +  FLGA  
Sbjct: 382 LRFFSSMWEDYSVRTDVKHYTCVVDLLGRAGRLDEALKLIKSMTIEKDEGLWGAFLGACR 441

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALK 407
                 L +K       ++   S  P   HY  + ++   AG  E   K
Sbjct: 442 THKDVVLAEKAATSLLELQ---SQNPG--HYVLLSNIYANAGRWEDVAK 485



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 144/349 (41%), Gaps = 47/349 (13%)

Query: 64   GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
            G  IH  + K G+  +  +   L+ ++ KC  ++ A  +FD++ +R L  +  MI GY +
Sbjct: 855  GRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMXERDLVTWTVMIGGYAE 914

Query: 124  NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
             G   ESL L  K+   G  PD    +M+     C +       +  R +   I +   +
Sbjct: 915  CGNANESLVLFDKMREEGVVPD--KVAMVTVVFACAKLG---AMHKARTIDDYIQRKKFQ 969

Query: 184  ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
             D +L TA++D + K G    AR +FD M EKNVI  ++MI+ +   G            
Sbjct: 970  LDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHG------------ 1017

Query: 244  VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
                                  RKAL++   ++++    +     +L+   +  G +++ 
Sbjct: 1018 --------------------QGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEG 1057

Query: 304  RRVF-----DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
             R F     D+  + +V  +T ++D  G+ G  ++AL+L   M     +  +  FLGA  
Sbjct: 1058 LRFFSXMWEDYSVRXDVKHYTCVVDLLGRAGRLDEALKLIXSMTXEKDEGLWGAFLGACR 1117

Query: 359  ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALK 407
                  L +K       ++      P   HY  + ++   AG  E   K
Sbjct: 1118 THKDVXLAEKAATSLLELQ---PQNPG--HYILLSNIYANAGRWEDVAK 1161


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  281 bits (720), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 153/440 (34%), Positives = 261/440 (59%), Gaps = 12/440 (2%)

Query: 58  SDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYM 117
           S    +G++IHA+  K G+  +  +   L+ ++ K  ++KY   +FD++P + + ++  +
Sbjct: 396 SGNTLHGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTI 455

Query: 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQI 177
           IAG+ +NG    +L L R++   G   D    S IL A     S + L  ++ + +H+ I
Sbjct: 456 IAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLAC----SGLKLISSV-KEIHSYI 510

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
           ++  + +D VL   +VD Y + G   YA  +F+++  K+V+  TSMIS ++  G   +A 
Sbjct: 511 IRKGL-SDLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEAL 569

Query: 238 EIFR----KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDM 293
           E+F       VE D +   + I   + S+   +K  E+H  LI+  F  +  L S LVDM
Sbjct: 570 ELFHLMKETGVEPDSISLVS-ILSAAASLSALKKGKEIHGFLIRKGFVLEGSLASTLVDM 628

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           YA+CG ++ +R VF+ ++ K++  WTSMI+ YG +G    A++LF  M++  + P+++ F
Sbjct: 629 YARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAF 688

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           +  L AC H+GL+++GR   ESM+ +Y ++P  EHYAC+VDLLGRA  LE+A +FV  M 
Sbjct: 689 VAVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGME 748

Query: 414 EKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473
            +P ++VW ALL +C++H + E+  IAA ++ +++  + PG YV +SN  +A  +W  V 
Sbjct: 749 VEPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDP-ENPGNYVLVSNVYSAERRWKDVE 807

Query: 474 ELREKMKLRGVLKDTGCSWV 493
            +R +MK  G+ K+ GCSW+
Sbjct: 808 XVRMRMKASGLKKNPGCSWI 827



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 207/390 (53%), Gaps = 15/390 (3%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +  +ALQ   +S     G+ IHA + K+    N  ++  L+ ++ + G +  A  +F  +
Sbjct: 284 TFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNM 343

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
                 ++N M++G+++NG   E+L    ++  +G++PD      I+ AS   RS   L 
Sbjct: 344 DDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASA--RSGNTLH 401

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
              G  +HA  +K  + +D  +  +LVD Y K     Y   +FD M +K+V+  T++I+G
Sbjct: 402 ---GMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAG 458

Query: 227 FMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
               G    A E+FR+     ++ D+++ ++++   S  ++      E+H  +I+     
Sbjct: 459 HAQNGSHSRALELFREVQLEGIDLDVMMISSILLACS-GLKLISSVKEIHSYIIRKG-LS 516

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           D+ L + +VD+Y +CG +D A R+F+ ++ K+V +WTSMI  Y  NG  N+ALELF +M+
Sbjct: 517 DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMK 576

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD-YSMKPKMEHYACMVDLLGRAGS 401
           E  V+P+ ++ +  LSA      + KG+EI   + R  + ++  +   + +VD+  R G+
Sbjct: 577 ETGVEPDSISLVSILSAAASLSALKKGKEIHGFLIRKGFVLEGSLA--STLVDMYARCGT 634

Query: 402 LEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           LE++ + V       +  +W +++++  +H
Sbjct: 635 LEKS-RNVFNFIRNKDLVLWTSMINAYGMH 663



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 207/411 (50%), Gaps = 18/411 (4%)

Query: 42  PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQ 101
           PL A + P  L+         YG ++H    K G      ++  ++ ++ KC  L  A Q
Sbjct: 177 PLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLNGARQ 236

Query: 102 MFDELPQRT-LSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           +FD +P++  + ++N MI+ Y  NGQ  E+L L  ++  +   P+ YTF   L+A   C 
Sbjct: 237 LFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQA---CE 293

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
            +  + +  G  +HA +LK     +  +  AL+  Y + GK   A  +F  M + + I  
Sbjct: 294 DSSFIKQ--GMFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISW 351

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEK----DIVVYNAMIEGYSISIETARKALEVHCQLI 276
            SM+SGF+  G   +A + + +  +     D+V   ++I   + S  T    +++H   +
Sbjct: 352 NSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLH-GMQIHAYAM 410

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           KN    D+++G++LVDMYAK   +     +FD M  K+V +WT++I G+ +NG+ ++ALE
Sbjct: 411 KNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALE 470

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           LF  +Q   +  + +     L AC    L+   +EI   + R       +++   +VD+ 
Sbjct: 471 LFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRKGLSDLVLQN--GIVDVY 528

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           G  G+++ A + + E+ E  +   W +++ SC +H+   +AN  A E+F L
Sbjct: 529 GECGNVDYAAR-MFELIEFKDVVSWTSMI-SCYVHNG--LAN-EALELFHL 574



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 99/362 (27%), Positives = 184/362 (50%), Gaps = 21/362 (5%)

Query: 64  GLKIHAH-ITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G ++HAH IT   +  +  +S +L+ ++ KCG L  A ++FD +P +T+  +N MI  Y+
Sbjct: 97  GQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYV 156

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            NG+   SL L R++  SG   D  TF  ILKA    +      R  G  VH   +K   
Sbjct: 157 TNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKD-----RRYGAEVHGLAIKEGY 211

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEK-NVICSTSMISGFMSQGFVEDAEEIF- 240
            +   +  ++V  Y K    + AR +FD M EK +V+   SMIS + S G   +A  +F 
Sbjct: 212 VSIVFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFG 271

Query: 241 ---RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
              + ++  +   + A ++    S    ++ + +H  ++K+ ++ +V + +AL+ MYA+ 
Sbjct: 272 EMQKASLAPNTYTFVAALQACEDS-SFIKQGMFIHATVLKSSYYINVFVANALIAMYARF 330

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           GK+ +A  +F +M   +  +W SM+ G+ +NG  ++AL+ +  M++   +P+ V  +  +
Sbjct: 331 GKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISII 390

Query: 358 SACGHAGLVDKGREIFESMERDYSMK----PKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           +A   +G    G +I       Y+MK      ++    +VD+  +  S++       +MP
Sbjct: 391 AASARSGNTLHGMQI-----HAYAMKNGLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMP 445

Query: 414 EK 415
           +K
Sbjct: 446 DK 447



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/205 (30%), Positives = 99/205 (48%), Gaps = 20/205 (9%)

Query: 256 EGYSISIET--ARKAL----EVHCQLI-KNVFFEDVKLGSALVDMYAKCGKIDDARRVFD 308
           E YS  +E   ++KAL    +VH  +I  N  F  V L + LV MY KCG + DA ++FD
Sbjct: 79  EAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFD 138

Query: 309 HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDK 368
            M  K +FTW +MI  Y  NG P  +LEL+  M+   +  +  TF   L ACG       
Sbjct: 139 GMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKACGLLKDRRY 198

Query: 369 GREIFE-SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS- 426
           G E+   +++  Y     + +   +V +  +   L  A +    MPEK +   W +++S 
Sbjct: 199 GAEVHGLAIKEGYVSIVFVAN--SIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISA 256

Query: 427 ---------SCRLHDDVEMANIAAN 442
                    + RL  +++ A++A N
Sbjct: 257 YSSNGQSIEALRLFGEMQKASLAPN 281


>gi|90399180|emb|CAJ86042.1| H0723C07.12 [Oryza sativa Indica Group]
          Length = 886

 Score =  281 bits (719), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 163/436 (37%), Positives = 249/436 (57%), Gaps = 14/436 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH    +TG + +  ++  L++++ K      A ++FD +P R L+ +N MI+GY  
Sbjct: 318 GVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAH 377

Query: 124 NGQVEESLSLVRKLVSS-GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            GQ  +SL + R++     E+PD +TF+ +LKA     S +   R  G  VHA +    V
Sbjct: 378 AGQGRDSLLVFREMQRRHDEQPDEFTFASLLKAC----SGLGAARE-GAQVHAAMAVRGV 432

Query: 183 K--ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
              ++ +L  AL+D YVK  +   A  VFD +  +N I  T++I G   +G V++A  +F
Sbjct: 433 SPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLF 492

Query: 241 RK----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
           R+     V  D  V ++++  ++       +  +VHC   K     DV + ++LVDMY K
Sbjct: 493 RRFWSSGVRADGHVLSSVVAVFA-DFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLK 551

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG   +A R F  M  +NV +WT+MI+G GK+G+  +A++LF  MQ   V+ + V +L  
Sbjct: 552 CGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLAL 611

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           LSAC H+GLVD+ R  F  + +D  M+PK EHYACMVDLLGRAG L +A + +L MP +P
Sbjct: 612 LSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEP 671

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
              VW  LLS+CR+H DV +     + +  ++  D P  YV LSN LA AG+W     +R
Sbjct: 672 TVGVWQTLLSACRVHKDVAVGREVGDVLLAVDG-DNPVNYVMLSNILAEAGEWRECQGIR 730

Query: 477 EKMKLRGVLKDTGCSW 492
             M+ +G+ K  GCSW
Sbjct: 731 GAMRRKGLRKQGGCSW 746



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 208/428 (48%), Gaps = 45/428 (10%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+++HA + K G   +T ++  L+ ++ KCG L  AG++FD +P+R + ++  ++ G+L 
Sbjct: 219 GVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLH 278

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G+  E L L  ++  SG  P+ +T S  LKA   C          G  +H   ++   +
Sbjct: 279 HGEARECLRLFGEMRGSGTSPNEFTLSATLKA---CGGGT----RAGVQIHGVCVRTGFE 331

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
             DV+  +LV  Y KG  T  AR VFD++  +N+    SMISG+   G   D+  +FR+ 
Sbjct: 332 GHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREM 391

Query: 244 VEK-----DIVVYNAMIEGYSISIETARKALEVHCQL-IKNVF-FEDVKLGSALVDMYAK 296
             +     D   + ++++  S  +  AR+  +VH  + ++ V    +  L  AL+D+Y K
Sbjct: 392 QRRHDEQPDEFTFASLLKACS-GLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVK 450

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           C ++  A +VFD ++++N   WT++I G+ + G   +A+ LF       V+ +       
Sbjct: 451 CHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSV 510

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKP----KMEHYACMVDLLGRAGSLEQALKFVLEM 412
           ++      LV++G+++       Y+ K      +     +VD+  + G   +A +   EM
Sbjct: 511 VAVFADFALVEQGKQV-----HCYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREM 565

Query: 413 PEKPNSDVWAALLSSCRLH----------DDVEMANIAANEIFKLNANDRPGAYVALSNT 462
           P + N   W A+++    H          ++++   + A+E+          AY+AL + 
Sbjct: 566 PAR-NVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEV----------AYLALLSA 614

Query: 463 LAAAGKWD 470
            + +G  D
Sbjct: 615 CSHSGLVD 622



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/195 (29%), Positives = 88/195 (45%), Gaps = 32/195 (16%)

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
           R  +++H  L+K  F  D  L + L+DMYAKCGK+  A  VFD M ++NV +WT+++ G+
Sbjct: 217 RGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGF 276

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG---HAGLVDKG---REIFESME-- 377
             +G   + L LF  M+     PN  T    L ACG    AG+   G   R  FE  +  
Sbjct: 277 LHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGGGTRAGVQIHGVCVRTGFEGHDVV 336

Query: 378 ------------------RDYSMKPK--MEHYACMVDLLGRAGSLEQALKFVLEMP---- 413
                             R + + P   +  +  M+     AG    +L    EM     
Sbjct: 337 ANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHD 396

Query: 414 EKPNSDVWAALLSSC 428
           E+P+   +A+LL +C
Sbjct: 397 EQPDEFTFASLLKAC 411


>gi|223948379|gb|ACN28273.1| unknown [Zea mays]
          Length = 648

 Score =  281 bits (719), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 162/439 (36%), Positives = 250/439 (56%), Gaps = 16/439 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRT-LSAYNYMIAGYL 122
           G+ IH    + G + +  ++  L++++ K G +  A ++FD     + ++ +N M++GY 
Sbjct: 78  GVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYA 137

Query: 123 KNGQVEESLSLVRKLV--SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
             G   ++L + R++       +PD +TF+ +LKA     S +   R  G  VHA +   
Sbjct: 138 HAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKAC----SGLGATRE-GAQVHAAMTAS 192

Query: 181 --DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
                ++ +L  ALVD YVK  +   A  VF+ +  KNVI  T+++ G   +G V +A E
Sbjct: 193 GFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALE 252

Query: 239 IFRK----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
           +FR+        D  V ++++ G         +  +VHC  IK+    DV  G+++VDMY
Sbjct: 253 LFRRFWRSGARPDSHVLSSVV-GVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMY 311

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
            KCG  D+A R+F  M+  NV +WT+M++G GK+G   +A+ LF  M+   V+P+ VT+L
Sbjct: 312 LKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYL 371

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             LSAC HAGLVD+ R  F  + RD +++PK EHYACMVDLLGRAG L +A   +  MP 
Sbjct: 372 ALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPM 431

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
           +P   VW  LLS+CR+H DV +   A + +  ++  D P  YV LSN LA AG+W    +
Sbjct: 432 EPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMD-GDNPVNYVTLSNVLAEAGEWRECHK 490

Query: 475 LREKMKLRGVLKDTGCSWV 493
           +R+ M+ RG+ K  GCSWV
Sbjct: 491 VRDAMRRRGLKKQGGCSWV 509



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 100/384 (26%), Positives = 177/384 (46%), Gaps = 51/384 (13%)

Query: 89  LHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE-RPDGY 147
           +++KCG L  A ++F  +  R + ++  ++ G+L++G     L L+ ++ ++ E  P+ Y
Sbjct: 1   MYVKCGELDLACEVFGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEY 60

Query: 148 TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARI 207
           T S  LKA  CC   V      G  +H   ++   +  DV+ ++LV  Y KGG+   AR 
Sbjct: 61  TLSASLKA--CC---VVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLVYSKGGRIGDARR 115

Query: 208 VFD-MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV------EKDIVVYNAMIEGYSI 260
           VFD   L   +    +M+SG+   G   DA  +FR+        + D   + ++++  S 
Sbjct: 116 VFDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACS- 174

Query: 261 SIETARKALEVHCQLIKNVF--FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTW 318
            +   R+  +VH  +  + F    +  L  ALVDMY KC ++  A +VF+ +++KNV  W
Sbjct: 175 GLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQW 234

Query: 319 TSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF----- 373
           T+++ G+ + G   +ALELF        +P+       +       LV++GR++      
Sbjct: 235 TAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVEQGRQVHCYGIK 294

Query: 374 --------------------------ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALK 407
                                     E M R+    P +  +  MV+ LG+ G   +A+ 
Sbjct: 295 DPTGTDVSAGNSIVDMYLKCGLPDEAERMFREMR-APNVVSWTTMVNGLGKHGLGREAVA 353

Query: 408 FVLEMPE---KPNSDVWAALLSSC 428
              EM     +P+   + ALLS+C
Sbjct: 354 LFEEMRAGGVEPDEVTYLALLSAC 377


>gi|357152605|ref|XP_003576175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Brachypodium distachyon]
          Length = 500

 Score =  281 bits (719), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 158/460 (34%), Positives = 254/460 (55%), Gaps = 18/460 (3%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           +P TA  L   L+    +     G ++H      G  P   +   L++L+ +C AL  A 
Sbjct: 2   SPPTAARLSGLLRRCAAAGALPAGAQLHVQAIVRGHLPQATLETDLVLLYCRCAALPCAR 61

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           ++FD +P  ++ AYN ++A       +E    L+  L+++G RPD Y     L+A  C  
Sbjct: 62  KVFDAMPSPSMHAYNILLAASPPRAALE----LLSGLIAAGFRPDRYAVPAALRA--CAE 115

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
              PL   LG ++H   ++     + V+ +AL+D Y K G    A  VFD M EK+ +  
Sbjct: 116 LQDPL---LGAVLHGFAVQFGFLGNVVVSSALLDMYAKSGLLDNAARVFDEMPEKDSVVW 172

Query: 221 TSMISGFMSQGFVEDAEEIFRKT------VEKDIVVYNAMIEGYSISIETARKALEVHCQ 274
             M++ +   G   +  EIFR+       + +D+    +++       E   K  E+H +
Sbjct: 173 NCMVTAYARAGMAAETLEIFRRAQVEVVNMARDLRSVPSVLNACGKEGELM-KGREIHGR 231

Query: 275 LIKNVFFE-DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
           +++ + F+ DV +G+AL+DMYAKCG +D +R VF  M ++NV +W+++I  YG +G   +
Sbjct: 232 MVRCLAFDSDVPIGNALIDMYAKCGHVDASRAVFAGMLERNVVSWSTLISCYGVHGKGKE 291

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMV 393
           AL ++  M    V+PN +TF+  LS+C H+GLV  GR IFESM + + ++P  EHYA MV
Sbjct: 292 ALRIYKEMLSQRVKPNGITFMSVLSSCSHSGLVTDGRMIFESMSKVHGVEPTAEHYASMV 351

Query: 394 DLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRP 453
           D+LGRAG++E+A+  + +MP  P +  W A+LS+C  H++V++  IAA  +F+L   D  
Sbjct: 352 DILGRAGAIEEAVGLIRKMPMGPCASAWGAVLSACATHNNVDVGEIAAYRLFELE-EDNA 410

Query: 454 GAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             YV L     A G+ D V  LR +M+  G++K  GCSWV
Sbjct: 411 SNYVTLCGIYDAVGQLDGVAGLRSRMRELGMVKTPGCSWV 450


>gi|224136143|ref|XP_002322250.1| predicted protein [Populus trichocarpa]
 gi|222869246|gb|EEF06377.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  281 bits (719), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 143/412 (34%), Positives = 247/412 (59%), Gaps = 9/412 (2%)

Query: 85  KLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERP 144
           ++L++H+KCG +  A ++FDE+P+R L ++N +I+G +  G   E+  L   +       
Sbjct: 15  RVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEAFRLFLNMWEEFSDA 74

Query: 145 DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSY 204
             +TF+++++AS    + + L  ++GR +HA  LK  +  D  +  AL+D Y K G    
Sbjct: 75  GSFTFAVMIRAS----AGLELI-SIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGSIED 129

Query: 205 ARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN---AMIEGYSIS 261
           AR VF+ M EK  +   ++I+G+   G+ E+A +++ +  +  + + +   +MI      
Sbjct: 130 ARFVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTFSMIVRICAR 189

Query: 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
           + +   A + H  LI++ F  D+   +ALVD Y+K G+I+DAR VFD M  KNV +W ++
Sbjct: 190 LASVEHAKQAHAALIRHGFGSDIVANTALVDFYSKWGRIEDARHVFDKMASKNVISWNAL 249

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           I GYG +G  ++A+ELF  M +  + PN++TFL  LSAC H+GL ++G EIF+SM RD  
Sbjct: 250 IGGYGNHGRGSEAVELFEQMIQERMNPNHITFLAVLSACSHSGLSERGWEIFQSMGRDNR 309

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441
           +KP+  HYACM++L+GR G L++AL  +   P KP +++WAALL++CR++++ E+   AA
Sbjct: 310 IKPRAMHYACMIELMGREGLLDEALALIRGAPFKPTANMWAALLTACRVNENFELGKFAA 369

Query: 442 NEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            +++ +   D+   Y+ L N   +AG      ++   +K +G+     CSW+
Sbjct: 370 EKLYGMEP-DKLNNYIVLLNIYNSAGNLKEAADVVHTLKRKGLRMRPVCSWI 420



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 95/362 (26%), Positives = 176/362 (48%), Gaps = 57/362 (15%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA   K G+  +  +S  L+ ++ KCG+++ A  +F+E+P++T   +N +IAGY  
Sbjct: 95  GRQLHACTLKMGIGDDIFVSCALIDMYSKCGSIEDARFVFEEMPEKTTVGWNTIIAGYAL 154

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR-SNVPLPRNLGRMVHAQILKCDV 182
           +G  EE+L +  ++  SG + D +TFSMI++   C R ++V   +      HA +++   
Sbjct: 155 HGYSEEALDMYYEMRDSGVKMDHFTFSMIVR--ICARLASVEHAKQ----AHAALIRHGF 208

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            +D V  TALVD Y K G+   AR VFD M  KNVI   ++I G+ + G   +A E+F +
Sbjct: 209 GSDIVANTALVDFYSKWGRIEDARHVFDKMASKNVISWNALIGGYGNHGRGSEAVELFEQ 268

Query: 243 TVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
            +++ +    + + A++   S S  + R                         +++   G
Sbjct: 269 MIQERMNPNHITFLAVLSACSHSGLSERGW-----------------------EIFQSMG 305

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           +        D+  +     +  MI+  G+ G  ++AL L   ++    +P    +   L+
Sbjct: 306 R--------DNRIKPRAMHYACMIELMGREGLLDEALAL---IRGAPFKPTANMWAALLT 354

Query: 359 ACGHAGLVDKGREIFE----SMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           AC       +  E FE    + E+ Y M+P K+ +Y  ++++   AG+L++A   V  + 
Sbjct: 355 AC-------RVNENFELGKFAAEKLYGMEPDKLNNYIVLLNIYNSAGNLKEAADVVHTLK 407

Query: 414 EK 415
            K
Sbjct: 408 RK 409



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 118/247 (47%), Gaps = 7/247 (2%)

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
           D  +   ++  +VK G    AR +FD M E+N++   ++ISG +  G   +A  +F    
Sbjct: 9   DQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEAFRLFLNMW 68

Query: 245 EK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           E+        +  MI   S  +E      ++H   +K    +D+ +  AL+DMY+KCG I
Sbjct: 69  EEFSDAGSFTFAVMIRA-SAGLELISIGRQLHACTLKMGIGDDIFVSCALIDMYSKCGSI 127

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           +DAR VF+ M +K    W ++I GY  +G   +AL+++  M++  V+ ++ TF   +  C
Sbjct: 128 EDARFVFEEMPEKTTVGWNTIIAGYALHGYSEEALDMYYEMRDSGVKMDHFTFSMIVRIC 187

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
                V+  ++   ++ R +     +     +VD   + G +E A     +M  K N   
Sbjct: 188 ARLASVEHAKQAHAALIR-HGFGSDIVANTALVDFYSKWGRIEDARHVFDKMASK-NVIS 245

Query: 421 WAALLSS 427
           W AL+  
Sbjct: 246 WNALIGG 252



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 77/163 (47%), Gaps = 2/163 (1%)

Query: 275 LIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQA 334
           +I N F  D  + + ++ M+ KCG + DARR+FD M ++N+ +W ++I G    G+  +A
Sbjct: 1   MIDNGFEFDQYMRNRVLLMHVKCGMMIDARRLFDEMPERNLVSWNTIISGLVDVGDFMEA 60

Query: 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394
             LF  M E        TF   + A     L+  GR++  +      +   +     ++D
Sbjct: 61  FRLFLNMWEEFSDAGSFTFAVMIRASAGLELISIGRQL-HACTLKMGIGDDIFVSCALID 119

Query: 395 LLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           +  + GS+E A     EMPEK     W  +++   LH   E A
Sbjct: 120 MYSKCGSIEDARFVFEEMPEKTTVG-WNTIIAGYALHGYSEEA 161


>gi|449437940|ref|XP_004136748.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g52630-like [Cucumis sativus]
          Length = 598

 Score =  281 bits (719), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 159/464 (34%), Positives = 265/464 (57%), Gaps = 21/464 (4%)

Query: 34  QNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKC 93
           QNY  + N L + +   +L+          GL++HAHI K G++    +S  L+ L+ K 
Sbjct: 23  QNYRQICNLLLSFTRSRSLRQ---------GLQLHAHILKFGLQTIPLVSHNLINLYSKT 73

Query: 94  GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
               ++ Q+FDE P+++ + ++ +I+ + +N     +L   R++++ G RPD + +    
Sbjct: 74  QLPLFSLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSAT 133

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
           KA    R +     ++G+ VH   +K     D  + ++LVD Y K G+   AR +FD M 
Sbjct: 134 KACGFLRRS-----DVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMP 188

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE--- 270
           E+NV+  + MI G+       +A  +F++ + +D+ V N       I + ++   LE   
Sbjct: 189 ERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDV-NDFTFSSVIRVCSSSTFLELGK 247

Query: 271 -VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
            +H   +K  F     +GSAL+ +Y+KCG I+ A +VFD +  +N+  W SM+    ++ 
Sbjct: 248 LIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHA 307

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
           +  +   LF  M    ++PN+++FL  L AC HAGLV+KGRE F S+ RDY ++P+ EHY
Sbjct: 308 HTQRVFGLFEEMGNVGMKPNFISFLSVLYACSHAGLVEKGREYF-SLMRDYGIEPETEHY 366

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
           A +VDLLGRAG L++A+  + +MP +P   VW ALL+ CR+H D EMA   A+ I ++++
Sbjct: 367 ASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDS 426

Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           +   G +V LSN  AAAG+++    +R+ ++ RGV K+TG SWV
Sbjct: 427 SS-SGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWV 469


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  281 bits (718), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 150/442 (33%), Positives = 266/442 (60%), Gaps = 15/442 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKC---GALKYAGQMFDELPQRTLSAYNYMIAG 120
           G + H  + K+G+  +  +   L+ ++ KC   G++  A ++FD +P   + ++  +I G
Sbjct: 164 GRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITG 223

Query: 121 YLKNGQVE-ESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           Y+++G  + E++ L  ++V    +P+ +TFS +LKA   C +   +   LG  V+A ++K
Sbjct: 224 YVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKA---CANLSDIW--LGEQVYALVVK 278

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
             + + + +  +L+  Y + G    AR  FD++ EKN++   ++++ +      E+A E+
Sbjct: 279 MRLASINCVGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFEL 338

Query: 240 FRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
           F +        +   + +++ G S SI    K  ++H +++K+ F  ++ + +AL+ MY+
Sbjct: 339 FNEIEGAGTGVNAFTFASLLSGAS-SIGAIGKGEQIHSRILKSGFKSNLHICNALISMYS 397

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           +CG I+ A +VF+ M   NV +WTSMI G+ K+G   +ALE F  M E  V PN VT++ 
Sbjct: 398 RCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIA 457

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            LSAC H GL+ +G + F+SM+ ++ + P+MEHYAC+VDLLGR+G LE+A++ V  MP K
Sbjct: 458 VLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFK 517

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
            ++ V    L +CR+H ++++   AA  I + + +D P AY+ LSN  A+AG+W+ V E+
Sbjct: 518 ADALVLRTFLGACRVHGNMDLGKHAAEMILEQDPHD-PAAYILLSNLHASAGQWEEVAEI 576

Query: 476 REKMKLRGVLKDTGCSWVGTES 497
           R+KMK R + K+ GCSW+  E+
Sbjct: 577 RKKMKERNLTKEAGCSWIEVEN 598



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 190/385 (49%), Gaps = 18/385 (4%)

Query: 57  NSDTPFYGLKIHAHITKTG-VKPNTNISIKLLILHLKC-GALKYAGQMFDELPQRTLSAY 114
           N +    G  I   + KTG  + +  +   L+ + +K  G L+ A ++FD +P R +  +
Sbjct: 54  NKENISLGKIIFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTW 113

Query: 115 NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH 174
             MI  + + G   +++ L   +V SG  PD +T S ++  S C    +    +LGR  H
Sbjct: 114 TLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVV--SACAEMGLL---SLGRQFH 168

Query: 175 AQILKCDVKADDVLYTALVDSYVK---GGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
             ++K  +  D  +  +LVD Y K    G    AR VFD M   NV+  T++I+G++  G
Sbjct: 169 CLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSG 228

Query: 232 FVE-DAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
             + +A E+F + V+  +      ++++++  + ++       +V+  ++K        +
Sbjct: 229 GCDREAIELFLEMVQGQVKPNHFTFSSVLKACA-NLSDIWLGEQVYALVVKMRLASINCV 287

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
           G++L+ MY++CG +++AR+ FD + +KN+ ++ ++++ Y K+ N  +A ELF  ++    
Sbjct: 288 GNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGT 347

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
             N  TF   LS     G + KG +I   + +    K  +     ++ +  R G++E A 
Sbjct: 348 GVNAFTFASLLSGASSIGAIGKGEQIHSRILKS-GFKSNLHICNALISMYSRCGNIEAAF 406

Query: 407 KFVLEMPEKPNSDVWAALLSSCRLH 431
           +   EM +  N   W ++++    H
Sbjct: 407 QVFNEMGD-GNVISWTSMITGFAKH 430



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 92/373 (24%), Positives = 163/373 (43%), Gaps = 45/373 (12%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +  S L+   N    + G +++A + K  +     +   L+ ++ +CG ++ A + FD L
Sbjct: 252 TFSSVLKACANLSDIWLGEQVYALVVKMRLASINCVGNSLISMYSRCGNMENARKAFDVL 311

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
            ++ L +YN ++  Y K+   EE+  L  ++  +G   + +TF+ +L  ++   +     
Sbjct: 312 FEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGA----- 366

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
              G  +H++ILK   K++  +  AL+  Y + G    A  VF+ M + NVI  TSMI+G
Sbjct: 367 IGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITG 426

Query: 227 FMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
           F   GF   A E F K +E  +    V Y A++   S            H  LI     E
Sbjct: 427 FAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACS------------HVGLIS----E 470

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
            +K        + K  K++    +   M+      +  ++D  G++G+  +A+EL   M 
Sbjct: 471 GLK--------HFKSMKVEHG--IVPRMEH-----YACVVDLLGRSGHLEEAMELVNSMP 515

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
                    TFLG   AC   G +D G+   E +       P    Y  + +L   AG  
Sbjct: 516 FKADALVLRTFLG---ACRVHGNMDLGKHAAEMILEQDPHDPAA--YILLSNLHASAGQW 570

Query: 403 EQALKFVLEMPEK 415
           E+  +   +M E+
Sbjct: 571 EEVAEIRKKMKER 583



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 73/253 (28%), Positives = 111/253 (43%), Gaps = 43/253 (16%)

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           K D V ++AL+  Y    K   A   F  MLE     +    +G            +FR 
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTG------------VFRA 51

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE-DVKLGSALVDMYAKC-GKI 300
              K+ +    +I G+                L+K  +FE DV +G AL+DM+ K  G +
Sbjct: 52  CSNKENISLGKIIFGF----------------LLKTGYFESDVCVGCALIDMFVKGNGDL 95

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           + A +VFD M  +NV TWT MI  + + G    A++LF  M      P+  T  G +SAC
Sbjct: 96  ESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPDRFTLSGVVSAC 155

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYAC----MVDLLGRA---GSLEQALKFVLEMP 413
              GL+  GR+ F  +     MK  ++   C    +VD+  +    GS++ A K    MP
Sbjct: 156 AEMGLLSLGRQ-FHCL----VMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARKVFDRMP 210

Query: 414 EKPNSDVWAALLS 426
              N   W A+++
Sbjct: 211 VH-NVMSWTAIIT 222


>gi|255576950|ref|XP_002529360.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223531180|gb|EEF33027.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 683

 Score =  281 bits (718), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 165/470 (35%), Positives = 269/470 (57%), Gaps = 45/470 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           K+   +TKTG++ +T +   L+ ++ +         +FDE+P R + ++N MI+GY+K  
Sbjct: 158 KLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVMKMLFDEMPDRDVISWNVMISGYVKCR 217

Query: 126 QVEESLSLV-RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
           + E+++++  R    SG  PD  T    L A T  +        LG+ +H   ++ +VK 
Sbjct: 218 RFEDAINVFCRMQEESGLMPDEATVVSTLSACTALKR-----LELGKKIH-HYVRDNVKF 271

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
             ++  AL+D Y K G  S AR VF+ M  KNVIC T+M+SG+ + G +E+A E+F  + 
Sbjct: 272 TPIIGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTMVSGYANCGELEEARELFEGSP 331

Query: 245 EKDIVVYNAMIEGYS---------------------------ISIETA---RKALE---- 270
            +D+V++ AMI GY                            +S+ T      A+E    
Sbjct: 332 IRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDKFIVVSLLTGCAQTGAIEQGKW 391

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           +H  + +N    D  +G+AL++MYAKCG I+ A  +F  ++ K+  +WTS+I G   NG 
Sbjct: 392 IHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAMNGK 451

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
            ++ALELF  M++  V+P+ +TF+G LSAC H GLV++GR+ F SM  +Y +KPK+EHY 
Sbjct: 452 TSKALELFSKMKQAGVRPDDITFIGVLSACSHGGLVEEGRKFFNSMRMEYQIKPKVEHYG 511

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNS---DVWAALLSSCRLHDDVEMANIAANEIFKL 447
           C+VDLLGRAG L +A + + ++P++  +    ++ +LLS+CR++ +VEM    A ++ K 
Sbjct: 512 CLVDLLGRAGLLNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGERVAKQLVKF 571

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTES 497
            ++D    +  L+N  A A +W+ VT++R KMK  GV K  GCS +  +S
Sbjct: 572 ESSD-SSVHTLLANIYAFADRWEDVTKVRRKMKDLGVKKTPGCSSIEVDS 620



 Score =  134 bits (338), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 112/435 (25%), Positives = 198/435 (45%), Gaps = 61/435 (14%)

Query: 36  YDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKC-- 93
           + + +NP T  S  S + +  +  +  +  +IHA I + G+  +     KL+     C  
Sbjct: 25  FSTFTNPTTGLSQQSCISYLKSCKSMTHLKQIHAQIFRVGLHQDIVSLNKLMAF---CTD 81

Query: 94  ---GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFS 150
              G L YA +MF  +    L  YN +I  + K G  + +L L  KL   G  PD +T+ 
Sbjct: 82  PFNGNLNYAEKMFKYIRYPCLLIYNLIIKAFAKKGNYKRTLVLFSKLREDGLWPDNFTYP 141

Query: 151 MILKASTCCRSNVPLPRNLGRMVHAQ-----ILKCDVKADDVLYTALVDSYVKGGKTSYA 205
            + KA             LG +  A+     + K  ++ D  +  +L+D Y +   T   
Sbjct: 142 FVFKAIG----------YLGEVSKAEKLRGLVTKTGLEFDTYVRNSLIDMYAQLALTDVM 191

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETA 265
           +++FD M +++VI    MISG++     EDA  +F +  E+  ++ +      ++S  TA
Sbjct: 192 KMLFDEMPDRDVISWNVMISGYVKCRRFEDAINVFCRMQEESGLMPDEATVVSTLSACTA 251

Query: 266 RKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
            K LE    +H  +  NV F  + +G+AL+DMY KCG +  AR VF+ M  KNV  WT+M
Sbjct: 252 LKRLELGKKIHHYVRDNVKFTPI-IGNALLDMYCKCGCLSIARAVFEEMPSKNVICWTTM 310

Query: 322 IDGYGK-----------NGNP--------------------NQALELFCMMQECCVQPNY 350
           + GY              G+P                    ++A+ LF  MQ   V+P+ 
Sbjct: 311 VSGYANCGELEEARELFEGSPIRDVVIWTAMINGYVQFNRFDEAVALFREMQIRKVKPDK 370

Query: 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410
              +  L+ C   G +++G+ I E ++ +      +   A ++++  + G +E+AL+   
Sbjct: 371 FIVVSLLTGCAQTGAIEQGKWIHEFIDENRIPIDAVVGTA-LIEMYAKCGFIEKALEIFY 429

Query: 411 EMPEKPNSDVWAALL 425
            +  K  +  W +++
Sbjct: 430 GLRVKDTAS-WTSII 443



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 42/186 (22%), Positives = 84/186 (45%), Gaps = 8/186 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH  I +  +  +  +   L+ ++ KCG ++ A ++F  L  +  +++  +I G   
Sbjct: 389 GKWIHEFIDENRIPIDAVVGTALIEMYAKCGFIEKALEIFYGLRVKDTASWTSIICGLAM 448

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG+  ++L L  K+  +G RPD  TF  +L A     S+  L     +  ++  ++  +K
Sbjct: 449 NGKTSKALELFSKMKQAGVRPDDITFIGVLSAC----SHGGLVEEGRKFFNSMRMEYQIK 504

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ----GFVEDAEEI 239
                Y  LVD   + G  + A  +   + ++N   +  +    +S     G VE  E +
Sbjct: 505 PKVEHYGCLVDLLGRAGLLNEAEELIKKIPDENKAITVPLYGSLLSACRIYGNVEMGERV 564

Query: 240 FRKTVE 245
            ++ V+
Sbjct: 565 AKQLVK 570


>gi|359488823|ref|XP_002273685.2| PREDICTED: uncharacterized protein LOC100245824 [Vitis vinifera]
          Length = 1984

 Score =  281 bits (718), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 162/443 (36%), Positives = 250/443 (56%), Gaps = 41/443 (9%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           +L  +++ G L+ A ++FDE+P+R   +++ MIA Y ++G  EE+L L  K+V  G +P+
Sbjct: 256 ILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPN 315

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
              F+  L A    R+      + G  +H  + K  +  D  + ++L+D Y K GK    
Sbjct: 316 ISCFACTLSALASLRA-----LSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDG 370

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY------- 258
           R+VFD++LEKNV+C  SM+ G+   G +E+ EE+F    EK+ V +  +I GY       
Sbjct: 371 RLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCE 430

Query: 259 ---------------------------SISIETARKALEVHCQLIKNVFFEDVKLGSALV 291
                                        SI +  K + VH ++IK     D+ +G+AL 
Sbjct: 431 KVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALT 490

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNY 350
           DMYAKCG I  +++VF+ M +KN  +WT MI G  ++G   ++L LF  M+    V PN 
Sbjct: 491 DMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNE 550

Query: 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410
           +  L  L AC H GLVDKG   F SME+ Y +KPK +HY C+VDLL R+G L +A +F+ 
Sbjct: 551 LMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIR 610

Query: 411 EMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
            +P +P ++ WAALLS C+ + D ++A   A ++++L  N+  G YV LSN  A+AG+W 
Sbjct: 611 TIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQLAENNSAG-YVLLSNIYASAGRWI 669

Query: 471 SVTELREKMKLRGVLKDTGCSWV 493
            V+ +R+ M+ +G+ K  GCSWV
Sbjct: 670 DVSNIRKLMREKGLKKSGGCSWV 692



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/350 (25%), Positives = 146/350 (41%), Gaps = 80/350 (22%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           A +  S L+ + N      G  +HAH+ KTG      I+IKLLIL+L C       Q+  
Sbjct: 21  AQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVK 80

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP 164
           E     L   N MI+ Y++ G      +LV+  +   E P+                   
Sbjct: 81  EFDGSDLVVSNCMISAYVQWG------NLVQARLLFDEMPE------------------- 115

Query: 165 LPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
             RN                 +V ++AL+   +K G+   +   F+    +NV+  T+ I
Sbjct: 116 --RN-----------------EVSWSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAI 156

Query: 225 SGFMSQGFVEDAEEIFRKTVEKDI----------------------------VVYNAMIE 256
           SGF+  G   +A ++F + +E  +                            +V  A  E
Sbjct: 157 SGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFE 216

Query: 257 GYSISIETARKALEV---HCQLIKNVF----FEDVKLGSALVDMYAKCGKIDDARRVFDH 309
            Y +S+  +   L +      L + VF      DV   +A++D Y + G + +ARR+FD 
Sbjct: 217 HY-LSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDE 275

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           M ++N  +W++MI  Y ++G   +AL+LF  M +   +PN   F   LSA
Sbjct: 276 MPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSA 325



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 136/308 (44%), Gaps = 56/308 (18%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYM------ 117
           G+ IH H+TK G+  +  I   L+ L+ KCG       +FD + ++ +  +N M      
Sbjct: 335 GINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSI 394

Query: 118 -------------------------IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
                                    IAGYL+N Q E+ L +   L+ SG+ P+  TFS +
Sbjct: 395 NGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSV 454

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L A   C S   L +  G  VH +I+K  ++ D  + TAL D Y K G    ++ VF+ M
Sbjct: 455 LCA---CASIASLDK--GMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERM 509

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVH 272
            EKN I  T MI G    GF  ++  +F +      V  N ++    +S+  A      H
Sbjct: 510 PEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELM---LLSVLFACS----H 562

Query: 273 CQLI-KNVFF----EDV-------KLGSALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWT 319
           C L+ K +++    E V       K  + +VD+ ++ G++ +A      +  Q     W 
Sbjct: 563 CGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWA 622

Query: 320 SMIDGYGK 327
           +++ G  K
Sbjct: 623 ALLSGCKK 630


>gi|225430143|ref|XP_002282128.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20540
           [Vitis vinifera]
          Length = 537

 Score =  281 bits (718), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 161/467 (34%), Positives = 262/467 (56%), Gaps = 49/467 (10%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           KIHAHI K  +  ++ +  K++ +    G  +YA  +F  +       YN MI  Y  N 
Sbjct: 32  KIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNK 91

Query: 126 QVEESLSLVRKLVSS--GERP---DGYTFSMILK--ASTCCRSNVPLPRNLGRMVHAQIL 178
               ++++ ++++ +  GE P   D +TF  ++K  A   C        +LG+ VH  + 
Sbjct: 92  VYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGLMCY-------DLGKQVHGHVF 144

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
           K   K++ V+  +LV+ YVK      A  VF+ M E++ +   ++ISG +  G +  A  
Sbjct: 145 KFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARA 204

Query: 239 IFRKTVEKDIVVYNAMIEGYSI------SIETARK------------------------A 268
           IF +  +K I  + A++ GY+       ++E  R+                        A
Sbjct: 205 IFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSVLPDCAQLGA 264

Query: 269 LE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
           LE    +H    K  F  ++ + +AL++MYAKCG ID  RR+FD M++++V +W++MI G
Sbjct: 265 LELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVG 324

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP 384
              +G   +A+ELF  MQ+  ++P+ +TF+G L+AC HAGL+++G   FESM+RDY+++P
Sbjct: 325 LANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHAGLLNEGLRYFESMKRDYNIEP 384

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
            +EHY C+V+LLG +G L+QAL+ V +MP KP+S +W +LLSSCR H ++++A IA   +
Sbjct: 385 GVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGNLKIAVIAMEHL 444

Query: 445 FKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
            +L   D  G YV LSN  A  GKWD V+ +R+ M+ + + K  GCS
Sbjct: 445 LELEPAD-TGNYVLLSNLYADLGKWDGVSRMRKLMRSKSMKKTPGCS 490



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 134/304 (44%), Gaps = 43/304 (14%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H H+ K G K NT +   L+ +++KC +L  A ++F+E+ +R   ++N +I+G+++
Sbjct: 136 GKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVR 195

Query: 124 NGQVE-------------------------------ESLSLVRKLVSSGERPDGYTFSMI 152
            GQ+                                ++L   R++   G  PD  +   +
Sbjct: 196 LGQMRRARAIFEEMQDKTIFSWTAIVSGYARIGCYADALEFFRRMQMVGIEPDEISLVSV 255

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L    C +        LG+ +H    K     +  +  AL++ Y K G     R +FD M
Sbjct: 256 L--PDCAQLGA---LELGKWIHIYADKAGFLRNICVCNALIEMYAKCGSIDQGRRLFDQM 310

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRK----TVEKDIVVYNAMIEGYSISIETARKA 268
            E++VI  ++MI G  + G   +A E+F++     +E  I+ +  ++   + +     + 
Sbjct: 311 KERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITFVGLLTACAHA-GLLNEG 369

Query: 269 LEVHCQLIKNVFFE-DVKLGSALVDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMIDGYG 326
           L     + ++   E  V+    LV++    G++D A  +   M +K +   W S++    
Sbjct: 370 LRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMPRKPDSPIWGSLLSSCR 429

Query: 327 KNGN 330
            +GN
Sbjct: 430 SHGN 433


>gi|15231358|ref|NP_187990.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273354|sp|Q9LIC3.1|PP227_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial; Flags: Precursor
 gi|9294022|dbj|BAB01925.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641888|gb|AEE75409.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 628

 Score =  281 bits (718), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 146/442 (33%), Positives = 255/442 (57%), Gaps = 13/442 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HAH+ KT   P T +  +LLI + KC  L+ A ++ DE+P++ + ++  MI+ Y +
Sbjct: 71  GQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQ 130

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G   E+L++  +++ S  +P+ +TF+ +L  ++C R++      LG+ +H  I+K +  
Sbjct: 131 TGHSSEALTVFAEMMRSDGKPNEFTFATVL--TSCIRAS---GLGLGKQIHGLIVKWNYD 185

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +   + ++L+D Y K G+   AR +F+ + E++V+  T++I+G+   G  E+A E+F + 
Sbjct: 186 SHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRL 245

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               +  + V Y +++   S  +       + HC +++        L ++L+DMY+KCG 
Sbjct: 246 HSEGMSPNYVTYASLLTALS-GLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGN 304

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ-ECCVQPNYVTFLGALS 358
           +  ARR+FD+M ++   +W +M+ GY K+G   + LELF +M+ E  V+P+ VT L  LS
Sbjct: 305 LSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLS 364

Query: 359 ACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            C H  + D G  IF+ M   +Y  KP  EHY C+VD+LGRAG +++A +F+  MP KP 
Sbjct: 365 GCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPT 424

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
           + V  +LL +CR+H  V++       + ++   +  G YV LSN  A+AG+W  V  +R 
Sbjct: 425 AGVLGSLLGACRVHLSVDIGESVGRRLIEIEPEN-AGNYVILSNLYASAGRWADVNNVRA 483

Query: 478 KMKLRGVLKDTGCSWVGTESGL 499
            M  + V K+ G SW+  E  L
Sbjct: 484 MMMQKAVTKEPGRSWIQHEQTL 505



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 62/232 (26%), Positives = 111/232 (47%), Gaps = 15/232 (6%)

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
           R    VH  +IK  +     L + L+  Y KC  ++DAR+V D M +KNV +WT+MI  Y
Sbjct: 69  RDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRY 128

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
            + G+ ++AL +F  M     +PN  TF   L++C  A  +  G++I   +   ++    
Sbjct: 129 SQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQI-HGLIVKWNYDSH 187

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIF 445
           +   + ++D+  +AG +++A +    +PE+      A +    +L  D E     A E+F
Sbjct: 188 IFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEE-----ALEMF 242

Query: 446 -KLNANDRPGAYVALSNTLAAA--------GKWDSVTELREKMKLRGVLKDT 488
            +L++      YV  ++ L A         GK      LR ++    VL+++
Sbjct: 243 HRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNS 294



 Score = 58.9 bits (141), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 10/127 (7%)

Query: 35  NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           NY + ++ LTA S  + L H         G + H H+ +  +     +   L+ ++ KCG
Sbjct: 253 NYVTYASLLTALSGLALLDH---------GKQAHCHVLRRELPFYAVLQNSLIDMYSKCG 303

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE-RPDGYTFSMIL 153
            L YA ++FD +P+RT  ++N M+ GY K+G   E L L R +      +PD  T   +L
Sbjct: 304 NLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVL 363

Query: 154 KASTCCR 160
              +  R
Sbjct: 364 SGCSHGR 370


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  280 bits (717), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 168/492 (34%), Positives = 264/492 (53%), Gaps = 35/492 (7%)

Query: 12   FSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHI 71
            FSS   R   L+P   +FP  +++  +L + ++                   G   H   
Sbjct: 2003 FSSL--RKLGLIPTRSSFPCTIKSCSALCDLVS-------------------GRMSHQQA 2041

Query: 72   TKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESL 131
               G + +  +S  L+ ++ KCG LK A  +FDE+P R + ++  MI GY++N Q + +L
Sbjct: 2042 FVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNAL 2101

Query: 132  SLVRKLVSS-GERPDGY-----TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             L +  +    E  DG      +  M+   S C R +    + +   VH  ++K      
Sbjct: 2102 LLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVS---GKGITEGVHGFVVKKGFDGS 2158

Query: 186  DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
              +   L+D+Y K G+   ++ VFD M EK+ I   SMI+ +   G   +A E+F   V 
Sbjct: 2159 IGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVR 2218

Query: 246  KDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
               V YNA+     +       AL     +H Q+IK     +V +G++++DMY KCG+++
Sbjct: 2219 HVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVE 2278

Query: 302  DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
             A++ FD M++KNV +WT+M+ GYG +G   +AL++F  M    V+PNY+TF+  L+AC 
Sbjct: 2279 MAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACS 2338

Query: 362  HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
            HAGLV++G   F +M+  Y ++P +EHY CMVDL GRAG L +A   +  M  KP+  VW
Sbjct: 2339 HAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKPDFVVW 2398

Query: 422  AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
             +LL +CR+H +V++  IAA ++F+L+  D  G YV LSN  A AG+W  V  +R  MK 
Sbjct: 2399 GSLLGACRIHKNVDLGEIAAQKLFELDP-DNCGYYVLLSNLYADAGRWADVERMRMLMKN 2457

Query: 482  RGVLKDTGCSWV 493
            R ++K  G S V
Sbjct: 2458 RQLVKPPGFSLV 2469



 Score =  203 bits (516), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 128/388 (32%), Positives = 197/388 (50%), Gaps = 41/388 (10%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IHA I ++G+  +  ++ KL+ L+   G + YA  +F ++       +N +I     NG
Sbjct: 45  QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTING 104

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             E++L L + +V  G   D +TF  ++KA T       L  +LG++VH  ++K     D
Sbjct: 105 LSEQALMLYKNMVCQGIAADKFTFPFVIKACTNF-----LSIDLGKVVHGSLIKYGFSGD 159

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             +   L+D Y K G T +A  VF+ M  +NV+  T++ISG +S G +++A  IF +   
Sbjct: 160 VFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPS 219

Query: 246 KDIVVYNAMIEGYSISIETARKALE----------------------------------- 270
           K++V + AMI GY I  +   +ALE                                   
Sbjct: 220 KNVVSWTAMINGY-IRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRG 278

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           +H   IKN     V LG+AL+DMY+KCG I DA  VF+ M +K++ TW SMI   G +G 
Sbjct: 279 IHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGL 338

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
             +AL LF  M+   V+P+ +TF+G L AC H   V +G   F  M + Y + P  EHY 
Sbjct: 339 GQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIPEHYE 398

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           CM +L  R+ +L++A K   E+    NS
Sbjct: 399 CMTELYARSNNLDEAFKSTKEVGSLANS 426



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 142/303 (46%), Gaps = 52/303 (17%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM-----LEKNVICSTSMIS 225
           R +HA+I++  +  D +L   L+  Y   G+ +YA ++F  +        N+I   + I+
Sbjct: 44  RQIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTIN 103

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS--ISIETARKALEVHCQLIKNVFFED 283
           G   Q  +   + +  + +  D   +  +I+  +  +SI+  +    VH  LIK  F  D
Sbjct: 104 GLSEQALML-YKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKV---VHGSLIKYGFSGD 159

Query: 284 VKLGSALVDMYAKCGK-------------------------------IDDARRVFDHMQQ 312
           V + + L+D Y KCG                                + +ARR+FD +  
Sbjct: 160 VFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPS 219

Query: 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           KNV +WT+MI+GY +N  P +ALELF  MQ   + PN  T +  + AC   G++  GR I
Sbjct: 220 KNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGI 279

Query: 373 FESMERDYSMKPKME----HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
                 DY++K  +E        ++D+  + GS++ A++    MP K +   W ++++S 
Sbjct: 280 -----HDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRK-SLPTWNSMITSL 333

Query: 429 RLH 431
            +H
Sbjct: 334 GVH 336



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 97/223 (43%), Gaps = 40/223 (17%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKY------------------------- 98
           G  +H  + K G   +  +   L+  + KCG  ++                         
Sbjct: 144 GKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLIS 203

Query: 99  ------AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
                 A ++FDE+P + + ++  MI GY++N Q EE+L L +++ +    P+ YT   +
Sbjct: 204 CGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSL 263

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           +KA  C    +     LGR +H   +K  ++    L TAL+D Y K G    A  VF+ M
Sbjct: 264 IKA--CTEMGI---LTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETM 318

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVY 251
             K++    SMI+     G  ++A  +F    R  V+ D + +
Sbjct: 319 PRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITF 361


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  280 bits (717), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 160/459 (34%), Positives = 257/459 (55%), Gaps = 18/459 (3%)

Query: 38  SLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALK 97
           SLS  LTA S+   ++ ++       G+++H    K G+  N  ++  +L ++ KCGAL 
Sbjct: 342 SLSGALTACSV---IKRHLE------GIQLHGLAVKCGLGFNICVANTILDMYGKCGALM 392

Query: 98  YAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
            A  +F+E+ +R   ++N +IA + +N ++ ++LSL   ++ S   PD +T+  ++KA  
Sbjct: 393 EACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKA-- 450

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
            C     L  N G  +H +I+K  +  D  + +ALVD Y K G    A  +   + EK  
Sbjct: 451 -CAGQQAL--NYGTEIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTT 507

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN---AMIEGYSISIETARKALEVHCQ 274
           +   S+ISGF SQ   E+A+  F + +E  I+  N   A +     ++ T     ++H Q
Sbjct: 508 VSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQIHAQ 567

Query: 275 LIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQA 334
           ++K     DV + S LVDMY+KCG + D+R +F+   +++  TW++MI  Y  +G   +A
Sbjct: 568 ILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAPKRDYVTWSAMICAYAYHGLGEKA 627

Query: 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394
           + LF  MQ   V+PN+  F+  L AC H G VDKG   F+ M   Y + P+MEHY+CMVD
Sbjct: 628 INLFEEMQLLNVKPNHTIFISVLRACAHMGYVDKGLHYFQKMLSHYGLDPQMEHYSCMVD 687

Query: 395 LLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG 454
           LLGR+G + +ALK +  MP + +  +W  LLS+C++  +VE+A  A N + +L+  D   
Sbjct: 688 LLGRSGQVNEALKLIESMPFEADDVIWRTLLSNCKMQGNVEVAEKAFNSLLQLDPQD-SS 746

Query: 455 AYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           AYV L+N  A  G W  V ++R  MK   + K+ GCSW+
Sbjct: 747 AYVLLANVYAIVGMWGEVAKMRSIMKNCKLKKEPGCSWI 785



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 101/432 (23%), Positives = 197/432 (45%), Gaps = 49/432 (11%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           NP    +    LQ   N      G ++H  +  TG  P   ++  LL  + K   + YA 
Sbjct: 2   NPTKKLTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAF 61

Query: 101 QMFDELPQRTLSAYNYMIAGY-------------------------------LKNGQVEE 129
           ++FD +PQR + ++N +I GY                               L NG   +
Sbjct: 62  KVFDRMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRK 121

Query: 130 SLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLY 189
           S+ +  ++ S     D  TF++ILKA +           LG  VH   ++   + D V  
Sbjct: 122 SIEIFVRMRSLKIPHDYATFAVILKACSGIED-----YGLGLQVHCLAIQMGFENDVVTG 176

Query: 190 TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIV 249
           +ALVD Y K  K   A  VF  M E+N++C +++I+G++      +  ++F+  ++  + 
Sbjct: 177 SALVDMYSKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMG 236

Query: 250 VYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRV 306
           V     A +      +   +   ++H   +K+ F  D  +G+A +DMYAKC ++ DA +V
Sbjct: 237 VSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKV 296

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           F+ +      ++ ++I GY +     +AL++F  +Q   +  + ++  GAL+AC      
Sbjct: 297 FNTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRH 356

Query: 367 DKGREIFESMERDYSMKPKMEHYAC----MVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
            +G ++        ++K  +    C    ++D+ G+ G+L +A   + E  E+ ++  W 
Sbjct: 357 LEGIQL-----HGLAVKCGLGFNICVANTILDMYGKCGALMEAC-LIFEEMERRDAVSWN 410

Query: 423 ALLSSCRLHDDV 434
           A++++   ++++
Sbjct: 411 AIIAAHEQNEEI 422



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 157/354 (44%), Gaps = 48/354 (13%)

Query: 148 TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARI 207
           TFS IL+  +  ++  P     G+ VH Q++         +   L+  Y K  K +YA  
Sbjct: 8   TFSHILQKCSNLKALNP-----GKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFK 62

Query: 208 VFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY--------S 259
           VFD M +++VI   ++I G+   G +  A+ +F    E+D+V +N+++  Y        S
Sbjct: 63  VFDRMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKS 122

Query: 260 I--------------------------SIETARKALEVHCQLIKNVFFEDVKLGSALVDM 293
           I                           IE     L+VHC  I+  F  DV  GSALVDM
Sbjct: 123 IEIFVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVVTGSALVDM 182

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           Y+KC K+DDA RVF  M ++N+  W+++I GY +N    + L+LF  M +  +  +  T+
Sbjct: 183 YSKCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTY 242

Query: 354 LGALSACGHAGLVDKGREIF-ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
                +C        G ++   +++ D++    +      +D+  +   +  A K    +
Sbjct: 243 ASVFRSCAGLSAFKLGTQLHGHALKSDFAYDSIIG--TATLDMYAKCERMFDAWKVFNTL 300

Query: 413 PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK-LNANDRPGAYVALSNTLAA 465
           P  P     A ++   R     +   + A +IF+ L  N+     ++LS  L A
Sbjct: 301 PNPPRQSYNAIIVGYAR-----QDQGLKALDIFQSLQRNNLGFDEISLSGALTA 349


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  280 bits (717), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 156/437 (35%), Positives = 245/437 (56%), Gaps = 13/437 (2%)

Query: 63  YGLKIHAHITKTGVKPNTNI--SIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120
           +G ++H  +  +G++ ++ +  +  L+ ++ KC  ++ A ++FD+     +     MI+G
Sbjct: 266 FGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISG 325

Query: 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
           Y+ NG    +L + R L+    R +  T + +L A   C     L   LG+ +H  ILK 
Sbjct: 326 YVLNGMNNNALEIFRWLLQERMRANSVTLASVLPA---CAGLAAL--TLGKELHGHILKN 380

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
                  + +A++D Y K G+   A   F  + +K+ +C  SMI+     G  E+A ++F
Sbjct: 381 GHGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLF 440

Query: 241 RKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
           R+      + D V  +A +   + ++       E+H  +++  F  D+   SAL+DMY+K
Sbjct: 441 RQMGMAGTKYDCVSISAALSACA-NLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSK 499

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG +D A RVFD M++KN  +W S+I  YG +G    +L LF  M    +QP++VTFL  
Sbjct: 500 CGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAI 559

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           +SACGHAG VD+G   F  M  +  +  +MEHYACMVDL GRAG L +A   +  MP  P
Sbjct: 560 ISACGHAGQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSP 619

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
           ++ VW  LL +CRLH +VE+A +A+  +F L+  +  G YV LSN  A AG+W+SV ++R
Sbjct: 620 DAGVWGTLLGACRLHGNVELAEVASRNLFDLDPQN-SGYYVLLSNVHANAGQWESVLKIR 678

Query: 477 EKMKLRGVLKDTGCSWV 493
             MK RGV K  GCSW+
Sbjct: 679 SLMKERGVQKVPGCSWI 695



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 116/435 (26%), Positives = 198/435 (45%), Gaps = 21/435 (4%)

Query: 3   NLSRIRSSVFSSTHNR----HYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINS 58
           NLS I      ST  +    H   V   +     + N DSL     A  L S LQ   + 
Sbjct: 5   NLSSIYKCFLPSTTFKLKSFHTNSVNIGKPLQFSIHNDDSL-----APQLVSILQTCTDP 59

Query: 59  DTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMI 118
                G + HA +   G+  N  +  KLL +++ CGA   A  +F +L       +N+MI
Sbjct: 60  SGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIFYQLRLWCSEPWNWMI 119

Query: 119 AGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
            G+   GQ + +L    K++  G  PD YTF  ++KA     S       LGR+VH +I 
Sbjct: 120 RGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVA-----LGRVVHDKIQ 174

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
               + D  + ++L+  Y + G    AR +FD M  K+ +    M++G++  G  ++A  
Sbjct: 175 FMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATG 234

Query: 239 IF---RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGS--ALVDM 293
           +F   R+T      V  A +     S        ++H  ++ +    D  + +  AL+D+
Sbjct: 235 VFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDI 294

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           Y KC  ++ AR++FD     ++   T+MI GY  NG  N ALE+F  + +  ++ N VT 
Sbjct: 295 YFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTL 354

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
              L AC     +  G+E+   + ++          A M D+  + G L+ A +  + + 
Sbjct: 355 ASVLPACAGLAALTLGKELHGHILKNGHGGSCYVGSAIM-DMYAKCGRLDLAHQTFIGIS 413

Query: 414 EKPNSDVWAALLSSC 428
           +K ++  W ++++SC
Sbjct: 414 DK-DAVCWNSMITSC 427



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 153/340 (45%), Gaps = 28/340 (8%)

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS---MISG 226
           GR  HAQ+L   +  + +L T L+  YV  G    A+ +F    +  + CS     MI G
Sbjct: 65  GRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLDAKNIF---YQLRLWCSEPWNWMIRG 121

Query: 227 FMSQGFVEDAEEIFRKTV------EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVF 280
           F   G  + A   + K +      +K    Y     G   S+   R    VH ++    F
Sbjct: 122 FTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGGLNSVALGRV---VHDKIQFMGF 178

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             DV +GS+L+  Y++ G I DAR +FD M  K+   W  M++GY KNG+ + A  +F  
Sbjct: 179 ELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFME 238

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFE-SMERDYSMKPKMEHYACMVDLLGRA 399
           M+     PN VTF   LS C    +++ G ++    +     M   + +   ++D+  + 
Sbjct: 239 MRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKC 298

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA-YVA 458
             +E A K + +     +  V  A++S   L+      N  A EIF+    +R  A  V 
Sbjct: 299 RDVEMARK-IFDQRTPVDIVVCTAMISGYVLNG----MNNNALEIFRWLLQERMRANSVT 353

Query: 459 LSNTLAAAGKWDSVTELREKMKLRG-VLKD--TGCSWVGT 495
           L++ L A     ++T  +E   L G +LK+   G  +VG+
Sbjct: 354 LASVLPACAGLAALTLGKE---LHGHILKNGHGGSCYVGS 390



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 60/110 (54%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
            S+ +AL    N     YG +IHA + +   + +      L+ ++ KCG L  A ++FD 
Sbjct: 453 VSISAALSACANLPALHYGKEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDT 512

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           + ++   ++N +IA Y  +G++++SL+L   ++  G +PD  TF  I+ A
Sbjct: 513 MEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISA 562


>gi|356561853|ref|XP_003549191.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 748

 Score =  280 bits (717), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 178/577 (30%), Positives = 283/577 (49%), Gaps = 93/577 (16%)

Query: 3   NLSRIRSSVFSSTHNRHYTLV---------PPNQTFPPKLQNYDSLSNPLT----ATSLP 49
           +LS  + S+  S+H  H TL            +  FP  L  +  L +PL     A  LP
Sbjct: 50  SLSTPQLSLTLSSHLPHPTLFSFSSLIHAFARSHHFPHVLTTFSHL-HPLRLIPDAFLLP 108

Query: 50  SALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQR 109
           SA++   +      G ++HA    +G   ++ ++  L  ++LKC  +  A ++FD +P R
Sbjct: 109 SAIKSCASLRALDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDR 168

Query: 110 TLSAYNYMIAGYLKNGQVEES-----------------------------------LSLV 134
            +  ++ MIAGY + G VEE+                                   + + 
Sbjct: 169 DVVVWSAMIAGYSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMF 228

Query: 135 RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVD 194
           R ++  G  PDG T S +L A  C    V     +G  VH  ++K  + +D  + +A++D
Sbjct: 229 RMMLVQGFWPDGSTVSCVLPAVGCLEDVV-----VGAQVHGYVIKQGLGSDKFVVSAMLD 283

Query: 195 SYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK----TVEKDIVV 250
            Y K G       VFD + E  +    + ++G    G V+ A E+F K     +E ++V 
Sbjct: 284 MYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTGLSRNGMVDTALEVFNKFKDQKMELNVVT 343

Query: 251 YNAMI-------------------EGYSI---------------SIETARKALEVHCQLI 276
           + ++I                   + Y +               +I       E+HC  +
Sbjct: 344 WTSIIASCSQNGKDLEALELFRDMQAYGVEPNAVTIPSLIPACGNISALMHGKEIHCFSL 403

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           +   F+DV +GSAL+DMYAKCG+I  ARR FD M   N+ +W +++ GY  +G   + +E
Sbjct: 404 RRGIFDDVYVGSALIDMYAKCGRIQLARRCFDKMSALNLVSWNAVMKGYAMHGKAKETME 463

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           +F MM +   +P+ VTF   LSAC   GL ++G   + SM  ++ ++PKMEHYAC+V LL
Sbjct: 464 MFHMMLQSGQKPDLVTFTCVLSACAQNGLTEEGWRCYNSMSEEHGIEPKMEHYACLVTLL 523

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456
            R G LE+A   + EMP +P++ VW ALLSSCR+H+++ +  IAA ++F L   + PG Y
Sbjct: 524 SRVGKLEEAYSIIKEMPFEPDACVWGALLSSCRVHNNLSLGEIAAEKLFFLEPTN-PGNY 582

Query: 457 VALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           + LSN  A+ G WD    +RE MK +G+ K+ G SW+
Sbjct: 583 ILLSNIYASKGLWDEENRIREVMKSKGLRKNPGYSWI 619



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/383 (24%), Positives = 163/383 (42%), Gaps = 81/383 (21%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGAL---KYAGQMFDELPQRTLSAYNYMIAGYL 122
           + HA I +  +  +T ++  LL  +    +L   + +  +   LP  TL +++ +I  + 
Sbjct: 21  QAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTLSSHLPHPTLFSFSSLIHAFA 80

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           ++      L+    L      PD +     +K+    R+  P     G+ +HA       
Sbjct: 81  RSHHFPHVLTTFSHLHPLRLIPDAFLLPSAIKSCASLRALDP-----GQQLHAFAAASGF 135

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             D ++ ++L   Y+K  +   AR +FD M +++V+  ++MI+G+   G VE+A+E+F +
Sbjct: 136 LTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAGYSRLGLVEEAKELFGE 195

Query: 243 T----VEKDIVVYNAMIEGY--------------------------SIS--------IET 264
                VE ++V +N M+ G+                          ++S        +E 
Sbjct: 196 MRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMMLVQGFWPDGSTVSCVLPAVGCLED 255

Query: 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK----------- 313
                +VH  +IK     D  + SA++DMY KCG + +  RVFD +++            
Sbjct: 256 VVVGAQVHGYVIKQGLGSDKFVVSAMLDMYGKCGCVKEMSRVFDEVEEMEIGSLNAFLTG 315

Query: 314 ------------------------NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349
                                   NV TWTS+I    +NG   +ALELF  MQ   V+PN
Sbjct: 316 LSRNGMVDTALEVFNKFKDQKMELNVVTWTSIIASCSQNGKDLEALELFRDMQAYGVEPN 375

Query: 350 YVTFLGALSACGHAGLVDKGREI 372
            VT    + ACG+   +  G+EI
Sbjct: 376 AVTIPSLIPACGNISALMHGKEI 398



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 108/232 (46%), Gaps = 8/232 (3%)

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           +  A + C S+     +  R  HA IL+ ++ +D  L T+L+  Y      S  ++   +
Sbjct: 1   MFHALSQCLSSSTASLSQARQAHALILRLNLFSDTQLTTSLLSFYANALSLSTPQLSLTL 60

Query: 212 ---MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKA 268
              +    +   +S+I  F            F   +    ++ +A +   +I    + +A
Sbjct: 61  SSHLPHPTLFSFSSLIHAFARSHHFPHVLTTFSH-LHPLRLIPDAFLLPSAIKSCASLRA 119

Query: 269 L----EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
           L    ++H     + F  D  + S+L  MY KC +I DAR++FD M  ++V  W++MI G
Sbjct: 120 LDPGQQLHAFAAASGFLTDSIVASSLTHMYLKCDRILDARKLFDRMPDRDVVVWSAMIAG 179

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM 376
           Y + G   +A ELF  M+   V+PN V++ G L+  G+ G  D+   +F  M
Sbjct: 180 YSRLGLVEEAKELFGEMRSGGVEPNLVSWNGMLAGFGNNGFYDEAVGMFRMM 231


>gi|449516914|ref|XP_004165491.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At5g52630-like [Cucumis
           sativus]
          Length = 598

 Score =  280 bits (717), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 159/464 (34%), Positives = 264/464 (56%), Gaps = 21/464 (4%)

Query: 34  QNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKC 93
           QNY  + N L + +   +L+          GL++HAHI K G++    +S  L+ L+ K 
Sbjct: 23  QNYRQICNLLLSFTRSRSLRQ---------GLQLHAHILKFGLQTIPLVSHNLINLYSKT 73

Query: 94  GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
               ++ Q+FDE P+++ + ++ +I+ + +N     +L   R++++ G RPD + +    
Sbjct: 74  QLPLFSLQVFDETPKKSSTTWSSVISAFAQNEAPLLALQFFRRMLNDGVRPDDHIYPSAT 133

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
           KA    R +     ++G+ VH   +K     D  + ++LVD Y K G+   AR +FD M 
Sbjct: 134 KACGFLRRS-----DVGKSVHCLAVKTGYYCDVFVGSSLVDMYAKCGEIGDARHLFDEMP 188

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE--- 270
           E+NV+  + MI G+       +A  +F++ + +D+ V N       I + ++   LE   
Sbjct: 189 ERNVVSWSGMIYGYAQLDDGVEALTLFKQALIEDVDV-NDFTFSSVIRVCSSSTFLELGK 247

Query: 271 -VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
            +H   +K  F     +GSAL+ +Y+KCG I+ A +VFD +  +N+  W SM+    ++ 
Sbjct: 248 LIHGLCLKMSFDSSSFVGSALISLYSKCGVIEGAYQVFDEIPTRNLGLWNSMLIACAQHA 307

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
           +  +   LF  M    ++PN++ FL  L AC HAGLV+KGRE F S+ RDY ++P+ EHY
Sbjct: 308 HTQRVFGLFEEMGNVGMKPNFIXFLSVLYACSHAGLVEKGREYF-SLMRDYGIEPETEHY 366

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
           A +VDLLGRAG L++A+  + +MP +P   VW ALL+ CR+H D EMA   A+ I ++++
Sbjct: 367 ASLVDLLGRAGKLQEAVSVIKQMPMRPTESVWGALLTGCRIHKDTEMAAFVADRILEMDS 426

Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           +   G +V LSN  AAAG+++    +R+ ++ RGV K+TG SWV
Sbjct: 427 SS-SGLHVLLSNAYAAAGRYEEAARMRKMLRDRGVKKETGLSWV 469


>gi|218195864|gb|EEC78291.1| hypothetical protein OsI_18005 [Oryza sativa Indica Group]
          Length = 690

 Score =  280 bits (717), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 163/436 (37%), Positives = 249/436 (57%), Gaps = 14/436 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH    +TG + +  ++  L++++ K      A ++FD +P R L+ +N MI+GY  
Sbjct: 122 GVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAH 181

Query: 124 NGQVEESLSLVRKLVSS-GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            GQ  +SL + R++     E+PD +TF+ +LKA     S +   R  G  VHA +    V
Sbjct: 182 AGQGRDSLLVFREMQRRHDEQPDEFTFASLLKAC----SGLGAARE-GAQVHAAMAVRGV 236

Query: 183 K--ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
              ++ +L  AL+D YVK  +   A  VFD +  +N I  T++I G   +G V++A  +F
Sbjct: 237 SPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLF 296

Query: 241 RK----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
           R+     V  D  V ++++  ++       +  +VHC   K     DV + ++LVDMY K
Sbjct: 297 RRFWSSGVRADGHVLSSVVAVFA-DFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLK 355

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG   +A R F  M  +NV +WT+MI+G GK+G+  +A++LF  MQ   V+ + V +L  
Sbjct: 356 CGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLAL 415

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           LSAC H+GLVD+ R  F  + +D  M+PK EHYACMVDLLGRAG L +A + +L MP +P
Sbjct: 416 LSACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEP 475

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
              VW  LLS+CR+H DV +     + +  ++  D P  YV LSN LA AG+W     +R
Sbjct: 476 TVGVWQTLLSACRVHKDVAVGREVGDVLLAVDG-DNPVNYVMLSNILAEAGEWRECQGIR 534

Query: 477 EKMKLRGVLKDTGCSW 492
             M+ +G+ K  GCSW
Sbjct: 535 GAMRRKGLRKQGGCSW 550



 Score =  145 bits (367), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 189/379 (49%), Gaps = 25/379 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+++HA + K G   +T ++  L+ ++ KCG L  AG++FD +P+R + ++  ++ G+L 
Sbjct: 23  GVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLH 82

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G+  E L L  ++  SG  P+ +T S  LKA   C          G  +H   ++   +
Sbjct: 83  HGEARECLRLFGEMRGSGTSPNEFTLSATLKA---CGGGT----RAGVQIHGVCVRTGFE 135

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
             DV+  +LV  Y KG  T  AR VFD++  +N+    SMISG+   G   D+  +FR+ 
Sbjct: 136 GHDVVANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREM 195

Query: 244 VEK-----DIVVYNAMIEGYSISIETARKALEVHCQL-IKNVF-FEDVKLGSALVDMYAK 296
             +     D   + ++++  S  +  AR+  +VH  + ++ V    +  L  AL+D+Y K
Sbjct: 196 QRRHDEQPDEFTFASLLKACS-GLGAAREGAQVHAAMAVRGVSPASNAILAGALLDVYVK 254

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           C ++  A +VFD ++++N   WT++I G+ + G   +A+ LF       V+ +       
Sbjct: 255 CHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSV 314

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKP----KMEHYACMVDLLGRAGSLEQALKFVLEM 412
           ++      LV++G+++       Y+ K      +     +VD+  + G   +A +   EM
Sbjct: 315 VAVFADFALVEQGKQVH-----CYTAKTPAGLDVSVANSLVDMYLKCGLTGEAGRRFREM 369

Query: 413 PEKPNSDVWAALLSSCRLH 431
           P + N   W A+++    H
Sbjct: 370 PAR-NVVSWTAMINGVGKH 387



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 55/96 (57%)

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
           R  +++H  L+K  F  D  L + L+DMYAKCGK+  A  VFD M ++NV +WT+++ G+
Sbjct: 21  RGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGF 80

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
             +G   + L LF  M+     PN  T    L ACG
Sbjct: 81  LHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACG 116


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 161/472 (34%), Positives = 260/472 (55%), Gaps = 21/472 (4%)

Query: 29  FPPKLQNYDSLSNPLTATSLPSA---LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIK 85
           F   LQN D   + ++  S+  A   L + +N      G +IHA+  K G   N  +   
Sbjct: 248 FFYDLQNADLKPDQVSIISIIVASGRLGYLLN------GKEIHAYAIKNGFDSNILVGNT 301

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           L+ ++ KC  + Y G+ FD +  + L ++    AGY +N    ++L L+R+L   G   D
Sbjct: 302 LIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVD 361

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
                 IL A   CR    L +   + +H   ++  + +D VL   ++D Y + G   YA
Sbjct: 362 ATMIGSILLA---CRGLNCLGKI--KEIHGYTIRGGL-SDPVLQNTIIDVYGECGIIDYA 415

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSIS 261
             +F+ +  K+V+  TSMIS ++  G    A E+F       +E D V   +++     S
Sbjct: 416 VRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVC-S 474

Query: 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
           + T +K  E+H  +I+  F  +  + + LVDMYA+CG ++DA ++F   + +N+  WT+M
Sbjct: 475 LSTLKKGKEIHGFIIRKGFILEGSISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAM 534

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           I  YG +G    A+ELF  M++  + P+++TFL  L AC H+GLV++G+   E M+ +Y 
Sbjct: 535 ISAYGMHGYGEAAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGKSFLEIMKCEYQ 594

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441
           ++P  EHY C+VDLLGR   LE+A + V  M  +P  +VW ALL +CR+H + E+  +AA
Sbjct: 595 LEPWPEHYTCLVDLLGRRNCLEEAYQIVKSMQNEPTPEVWCALLGACRIHSNKEIGEVAA 654

Query: 442 NEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            ++ +L+  D PG YV +SN  AA G+W  V E+R +MK  G+ K+ GCSW+
Sbjct: 655 EKLLELDL-DNPGNYVLVSNVFAANGRWKDVEEVRMRMKGSGLTKNPGCSWI 705



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 116/403 (28%), Positives = 206/403 (51%), Gaps = 17/403 (4%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +  +ALQ   +S     G++IHA I K+G   +  ++  L+ ++++ G +  A  +F  L
Sbjct: 162 TFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNL 221

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
             + +  +N M+ G+++NG   E+L     L ++  +PD  +   I+ AS   R    L 
Sbjct: 222 EGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASG--RLGYLLN 279

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
              G+ +HA  +K    ++ ++   L+D Y K    SY    FD+M  K++I  T+  +G
Sbjct: 280 ---GKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAG 336

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS---IETARKALEVHCQLIKNVFFED 283
           +        A E+ R+   + + V   MI    ++   +    K  E+H   I+    + 
Sbjct: 337 YAQNKCYLQALELLRQLQMEGMDVDATMIGSILLACRGLNCLGKIKEIHGYTIRGGLSDP 396

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
           V L + ++D+Y +CG ID A R+F+ ++ K+V +WTSMI  Y  NG  N+ALE+F  M+E
Sbjct: 397 V-LQNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKE 455

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD-YSMKPKMEHYACMVDLLGRAGSL 402
             ++P+YVT +  LSA      + KG+EI   + R  + ++  + +   +VD+  R GS+
Sbjct: 456 TGLEPDYVTLVSILSAVCSLSTLKKGKEIHGFIIRKGFILEGSISN--TLVDMYARCGSV 513

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIF 445
           E A K +    +  N  +W A++S+  +H   E    AA E+F
Sbjct: 514 EDAYK-IFTCTKNRNLILWTAMISAYGMHGYGE----AAVELF 551



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 120/434 (27%), Positives = 204/434 (47%), Gaps = 22/434 (5%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRT-LSAYNYMIAG 120
           F G +IH    K G      +   L+ L+ KC  +  A ++FD +  R  + ++N +I+ 
Sbjct: 75  FCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISA 134

Query: 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
           Y  NG   E+L L  +++ +G   + YTF+  L+A   C  +  +   LG  +HA ILK 
Sbjct: 135 YSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQA---CEDSSFIK--LGMQIHAAILKS 189

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
               D  +  ALV  YV+ GK   A ++F  +  K+++   SM++GF+  G   +A E F
Sbjct: 190 GRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFF 249

Query: 241 RKTVEKDIVVYNAMIEGYSISIETAR-----KALEVHCQLIKNVFFEDVKLGSALVDMYA 295
                 D+      I   SI + + R        E+H   IKN F  ++ +G+ L+DMYA
Sbjct: 250 YDLQNADLKPDQVSI--ISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYA 307

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KC  +    R FD M  K++ +WT+   GY +N    QALEL   +Q   +  +      
Sbjct: 308 KCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGS 367

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            L AC     + K +EI     R     P +++   ++D+ G  G ++ A++ + E  E 
Sbjct: 368 ILLACRGLNCLGKIKEIHGYTIRGGLSDPVLQN--TIIDVYGECGIIDYAVR-IFESIEC 424

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
            +   W +++ SC +H+   +AN A      +        YV L + L+A     S++ L
Sbjct: 425 KDVVSWTSMI-SCYVHNG--LANKALEVFSSMKETGLEPDYVTLVSILSAVC---SLSTL 478

Query: 476 REKMKLRGVLKDTG 489
           ++  ++ G +   G
Sbjct: 479 KKGKEIHGFIIRKG 492



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 151/288 (52%), Gaps = 9/288 (3%)

Query: 89  LHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYT 148
           ++ KCG++  A  +FD++ +R++  +N M+ GY+ NG+   +L + R++   G   D YT
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIV 208
           F ++LKA       +      G  +H   +K    +   +  +LV  Y K    + AR +
Sbjct: 61  FPVLLKAC-----GIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKL 115

Query: 209 FDMMLEKN-VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETA-- 265
           FD M  +N V+   S+IS +   G   +A  +F + ++  +V           + E +  
Sbjct: 116 FDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSF 175

Query: 266 -RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
            +  +++H  ++K+    DV + +ALV MY + GK+ +A  +F +++ K++ TW SM+ G
Sbjct: 176 IKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTG 235

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           + +NG  ++ALE F  +Q   ++P+ V+ +  + A G  G +  G+EI
Sbjct: 236 FIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEI 283



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 1/135 (0%)

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           MY KCG + DA  +FD M ++++FTW +M+ GY  NG    ALE++  M+   V  +  T
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
           F   L ACG    +  G EI   +   Y     +     +V L  +   +  A K    M
Sbjct: 61  FPVLLKACGIVEDLFCGAEI-HGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRM 119

Query: 413 PEKPNSDVWAALLSS 427
             + +   W +++S+
Sbjct: 120 YVRNDVVSWNSIISA 134


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 149/434 (34%), Positives = 254/434 (58%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH +  + G     NIS  L  ++ KCG+++ A  +FD + Q+T+ ++N M+ GY++
Sbjct: 267 GKSIHGYAIRAGFAKLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQ 326

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG+ E+++++  K++  G  P G T   I++A   C     L R  G+ VH  + + ++ 
Sbjct: 327 NGEPEKAIAVFEKMLEEGIDPTGVT---IMEALHACADLGDLER--GKFVHKFVDQLNLG 381

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +D  +  +L+  Y K  +   A  +F+ +  +  +   +MI G+   G V +A   F + 
Sbjct: 382 SDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEM 441

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               ++ D     ++I   +  +   R A  +H  +I++   +++ + +ALVDMY+KCG 
Sbjct: 442 KSLGMKPDSFTMVSVIPALA-ELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGA 500

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I  AR++FD +  ++V TW +MIDGYG +G    AL+LF  M++  V+PN +T+L  +SA
Sbjct: 501 IHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISA 560

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H+GLVD+G   F+SM++DY ++P M+HY  MVDLLGRAG +++A  F+  MP  P   
Sbjct: 561 CSHSGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGIT 620

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           V+ A   +C++H ++E+   AA ++F+LN  D  G +V L+N  A+  KW  V E+R+ M
Sbjct: 621 VYGAXXGACKIHKNIEVGEKAAKKLFELNP-DEGGYHVLLANIYASTSKWSKVAEVRKTM 679

Query: 480 KLRGVLKDTGCSWV 493
           + +G+ K  GCS V
Sbjct: 680 EKKGLKKTPGCSVV 693



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 90/313 (28%), Positives = 164/313 (52%), Gaps = 12/313 (3%)

Query: 71  ITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEES 130
           + K G+        KL+ L  K G++  A ++F+ +  +  + Y+ M+ GY KN  +E +
Sbjct: 72  VIKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETA 131

Query: 131 LSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT 190
           L+ + ++     +P  Y F+ +LK    C  N  L R  G+ +H Q++     A+    T
Sbjct: 132 LAFLCRMRYDDVKPVVYNFTYLLKV---CGDNADLKR--GKEIHGQLITNSFAANVFAMT 186

Query: 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK---- 246
            +V+ Y K  +   A  +FD M E++++   ++I+GF   GF + A E+  +  ++    
Sbjct: 187 GVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRP 246

Query: 247 -DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARR 305
             I +   +     + +    K+  +H   I+  F + V + +AL DMY+KCG ++ AR 
Sbjct: 247 DSITLVTVLPAAADVGLLMVGKS--IHGYAIRAGFAKLVNISTALADMYSKCGSVETARL 304

Query: 306 VFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365
           +FD M QK V +W SM+DGY +NG P +A+ +F  M E  + P  VT + AL AC   G 
Sbjct: 305 IFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGD 364

Query: 366 VDKGREIFESMER 378
           +++G+ + + +++
Sbjct: 365 LERGKFVHKFVDQ 377



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 180/378 (47%), Gaps = 24/378 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH  +       N      ++ ++ KC  +  A +MFD +P+R L ++N +IAG+ +
Sbjct: 166 GKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQ 225

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  +++L LV ++   G+RPD  T   +L A+    ++V L   +G+ +H   ++    
Sbjct: 226 NGFAKKALELVLRMQDEGQRPDSITLVTVLPAA----ADVGLLM-VGKSIHGYAIRAGFA 280

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               + TAL D Y K G    AR++FD M +K V+   SM+ G++  G  E A  +F K 
Sbjct: 281 KLVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKM 340

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE----------DVKLGSALVDM 293
           +E+        I+   ++I  A  A      L +  F            D+ + ++L+ M
Sbjct: 341 LEEG-------IDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISM 393

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           Y+KC ++D A  +F+++  +   +W +MI GY +NG  ++AL  F  M+   ++P+  T 
Sbjct: 394 YSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTM 453

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           +  + A     +    + I   + R   +   +     +VD+  + G++  A K + +M 
Sbjct: 454 VSVIPALAELSVTRHAKWIHGLIIRS-CLDKNIFVTTALVDMYSKCGAIHMARK-LFDMI 511

Query: 414 EKPNSDVWAALLSSCRLH 431
              +   W A++     H
Sbjct: 512 SDRHVITWNAMIDGYGTH 529



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 116/243 (47%), Gaps = 44/243 (18%)

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS--ISIETA------------- 265
           T ++S F   G + +A  +F    +K   +Y+ M++GY+   S+ETA             
Sbjct: 85  TKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVK 144

Query: 266 -------------------RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRV 306
                              ++  E+H QLI N F  +V   + +V+MYAKC +IDDA ++
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKM 204

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           FD M ++++ +W ++I G+ +NG   +ALEL   MQ+   +P+ +T +  L A    GL+
Sbjct: 205 FDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLL 264

Query: 367 DKGREIFESMERDYSMKPKMEHY----ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
             G+ I       Y+++            + D+  + GS+E A + + +  ++     W 
Sbjct: 265 MVGKSI-----HGYAIRAGFAKLVNISTALADMYSKCGSVETA-RLIFDGMDQKTVVSWN 318

Query: 423 ALL 425
           +++
Sbjct: 319 SMM 321


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 150/434 (34%), Positives = 251/434 (57%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H+   K+ ++ N  ++  +L ++ KC AL  A  MFDE+ +R   ++N +IA + +
Sbjct: 397 GRQLHSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQ 456

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  EE+L+L   ++     PD +T+  +LKA   C S   L  N G  +H +I+K  + 
Sbjct: 457 NGNEEETLNLFASMLRLRMEPDQFTYGSVLKA---CSSQQAL--NSGMEIHNRIIKSGLG 511

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE----EI 239
            D  +  AL+D Y K G    A+ + D + ++ ++   ++I+GF      EDA     E+
Sbjct: 512 LDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEM 571

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            + +V+ D   Y  +++  + ++ +     ++H Q+IK     DV + S LVDMY+KCG 
Sbjct: 572 LKMSVKPDNFTYAIVLDACA-NLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGN 630

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           + D+  VF+    K+  TW +MI GY ++G   +AL  F  MQ   V+PN+ TF+  L A
Sbjct: 631 MQDSALVFEKAPNKDFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRA 690

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H G +DKG   F +M  +Y ++P++EHY+CM+D++GR+G + +ALK + EMP + ++ 
Sbjct: 691 CAHMGFIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAV 750

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +W  LLS C++H ++E+A  A N I +L   D   A + LSN  A AG W  V+E+R+ M
Sbjct: 751 IWRTLLSICKIHGNIEIAEKATNAILQLEPED-SSACILLSNIYADAGMWGKVSEMRKMM 809

Query: 480 KLRGVLKDTGCSWV 493
           +   + K+ GCSW+
Sbjct: 810 RYNKLKKEPGCSWI 823



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 185/374 (49%), Gaps = 16/374 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HAH  K     +  +    L ++ KCG+L  A ++F+ LP+ +L  YN +I G ++
Sbjct: 296 GTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADAQRIFNSLPKHSLQCYNAIIVGCVR 355

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N +  E+L   + L+ SG   +  + S    A    + ++      GR +H+  +K  ++
Sbjct: 356 NEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASIKGDLD-----GRQLHSLSVKSTLR 410

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
           ++  +  +++D Y K    S A  +FD M  ++ +   ++I+     G  E+   +F   
Sbjct: 411 SNICVANSILDMYGKCEALSEACCMFDEMERRDAVSWNAVIAAHEQNGNEEETLNLFASM 470

Query: 241 -RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            R  +E D   Y ++++  S S +     +E+H ++IK+    D  +G AL+DMY KCG 
Sbjct: 471 LRLRMEPDQFTYGSVLKACS-SQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGM 529

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I++A+++ D ++Q+ + +W ++I G+    +   A   F  M +  V+P+  T+   L A
Sbjct: 530 IEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDA 589

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C +   V  G++I   + +   +   +   + +VD+  + G+++ +    L   + PN D
Sbjct: 590 CANLASVGLGKQIHGQIIK-LELHSDVYITSTLVDMYSKCGNMQDS---ALVFEKAPNKD 645

Query: 420 --VWAALLSSCRLH 431
              W A++     H
Sbjct: 646 FVTWNAMICGYAQH 659



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 104/424 (24%), Positives = 203/424 (47%), Gaps = 49/424 (11%)

Query: 46  TSLPSALQ---HYINSDTPFYGLK----IHAHITKTGVKPNTNISIKLLILHLKCGALKY 98
           T LP+ ++   H I   + +  LK     HA +  +G  P+  IS  L+ ++L+C  L Y
Sbjct: 37  TKLPTKIRTFSHIIQECSDYNSLKPGKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNY 96

Query: 99  AGQMFDELPQRTLSAYNYMIAGY-------------------------------LKNGQV 127
           A ++F+++ QR + +YN MI+GY                               L+NG+ 
Sbjct: 97  AYKVFEKMSQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGEC 156

Query: 128 EESLSLVRKLVSSGERP-DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
            +S+ +   +  S E   D  TF+++LKA +           LG  VH  I++     D 
Sbjct: 157 RKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDG-----GLGIQVHGLIVRMGFYKDV 211

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
           V  +AL+D Y K  +   +  +F  +  KN +C +++I+G +         E+F++  + 
Sbjct: 212 VTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKV 271

Query: 247 DIVVYNAMIEGYSIS---IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
            I V  ++      S   +   +   ++H   +K  F  D+ +G+A +DMYAKCG + DA
Sbjct: 272 GIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLADA 331

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
           +R+F+ + + ++  + ++I G  +N    +AL+ F ++ +  +  N ++  GA SAC   
Sbjct: 332 QRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACASI 391

Query: 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA 423
                GR++  S+    +++  +     ++D+ G+  +L +A     EM E+ ++  W A
Sbjct: 392 KGDLDGRQL-HSLSVKSTLRSNICVANSILDMYGKCEALSEACCMFDEM-ERRDAVSWNA 449

Query: 424 LLSS 427
           ++++
Sbjct: 450 VIAA 453



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/317 (24%), Positives = 145/317 (45%), Gaps = 44/317 (13%)

Query: 148 TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARI 207
           TFS I++   C   N   P   G+  HA+++      D  +   L+  Y++    +YA  
Sbjct: 45  TFSHIIQ--ECSDYNSLKP---GKQAHARMIVSGFIPDVYISNCLMKMYLRCSHLNYAYK 99

Query: 208 VFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY--------S 259
           VF+ M +++VI   +MISG+   G +  A E F  T ++D+V +N+M+ G+        S
Sbjct: 100 VFEKMSQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFLQNGECRKS 159

Query: 260 ISI---------------------------ETARKALEVHCQLIKNVFFEDVKLGSALVD 292
           I +                           E     ++VH  +++  F++DV  GSAL+D
Sbjct: 160 IDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDVVTGSALLD 219

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           MYAKC ++DD+ ++F  +  KN   W+++I G  +N      LELF  MQ+  +  +   
Sbjct: 220 MYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKVGIGVSQSI 279

Query: 353 FLGALSACGHAGLVDKGREIF-ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
           +     +C     +  G ++   +++ D+     +      +D+  + GSL  A +    
Sbjct: 280 YASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVG--TATLDMYAKCGSLADAQRIFNS 337

Query: 412 MPEKPNSDVWAALLSSC 428
           +P K +   + A++  C
Sbjct: 338 LP-KHSLQCYNAIIVGC 353


>gi|255568474|ref|XP_002525211.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535508|gb|EEF37177.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 654

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 167/521 (32%), Positives = 272/521 (52%), Gaps = 47/521 (9%)

Query: 14  STHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITK 73
           S HNRH   +    +         +L N ++ T L  +L  +  SD    G ++H  + +
Sbjct: 101 SLHNRHGDALDLFSSLASS-----NLVNNISITCLLKSLSSFTLSDVKL-GKEVHGFVLR 154

Query: 74  TGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL 133
           TG   +  +   L+  + KC  L  + ++FD + +R + ++N MI+GY + G  E+  +L
Sbjct: 155 TGFDADVFVENALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMISGYSQGGLYEDCKTL 214

Query: 134 VRKLVS-SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTAL 192
            R++V  SG RP+G T   +L+A   C     L    G  VH  I+   V+ D  +  AL
Sbjct: 215 YREMVDFSGFRPNGVTVVSVLQA---CGQTQDLA--FGMEVHKFIVDNQVEIDISVCNAL 269

Query: 193 VDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN 252
           +  Y K G   YAR +FD M EK+ +   ++ISG M  G+V+ + E+FR    + +  +N
Sbjct: 270 IGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGLMLHGYVDQSLELFRGMKTQILSTWN 329

Query: 253 AMIEGY------------------------SISIETARKAL----------EVHCQLIKN 278
           A+I G                         ++++ +    +          E+H   IK 
Sbjct: 330 AVITGLVQNNRHEGVLDLVREMQALGFRPNAVTLSSVLSTIAYFSSLKGGKEIHSYAIKI 389

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
            +  ++ + +A++DMYAK G +  A+RVFD  + +++  WT++I  Y  +G+ N AL LF
Sbjct: 390 GYHRNIYVATAIIDMYAKSGYLRGAQRVFDQSKDRSLVIWTAIISAYAVHGDANLALGLF 449

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398
             M +  +QP+ VTF   L+AC H G+VDK  EIFESM + Y ++P +EHYAC+V  LG+
Sbjct: 450 HEMLKQGIQPDPVTFTAVLAACAHCGMVDKAWEIFESMFKKYGIQPLVEHYACVVGALGK 509

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVA 458
           A  L +A +FV +MP +P++ VW ALL    +  DVE+     + +F++   +  G YV 
Sbjct: 510 ARRLSEAKEFVSKMPIEPSAKVWGALLHGASISSDVELGKSVCDYLFEIEP-ENTGNYVI 568

Query: 459 LSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           ++N  + AG+W    E+RE+M   G+ K  G SW+ T  GL
Sbjct: 569 MANLYSQAGRWKEADEVRERMNKVGLQKIPGSSWIETSEGL 609



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 121/469 (25%), Positives = 213/469 (45%), Gaps = 53/469 (11%)

Query: 52  LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL 111
           L H      P    ++HA +    V P   ++ KL+ L+ K   L +A  +FD++P +  
Sbjct: 31  LHHLTELRLPLQAKQLHARLILFSVTPENYLASKLVALYSKTNHLAFARYVFDQIPHKNT 90

Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA-STCCRSNVPLPRNLG 170
            +YN M+  Y  + +  ++L L   L SS    +  + + +LK+ S+   S+V     LG
Sbjct: 91  FSYNAMLISYSLHNRHGDALDLFSSLASS-NLVNNISITCLLKSLSSFTLSDV----KLG 145

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           + VH  +L+    AD  +  AL+  Y K      +R VFD M +++V+   SMISG+   
Sbjct: 146 KEVHGFVLRTGFDADVFVENALITYYSKCYDLDLSRKVFDRMTKRDVVSWNSMISGYSQG 205

Query: 231 GFVEDAEEIFRKTVE-----KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
           G  ED + ++R+ V+      + V   ++++    + + A   +EVH  ++ N    D+ 
Sbjct: 206 GLYEDCKTLYREMVDFSGFRPNGVTVVSVLQACGQTQDLAF-GMEVHKFIVDNQVEIDIS 264

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF------- 338
           + +AL+ +YAKCG +D AR +FD M +K+  T+ ++I G   +G  +Q+LELF       
Sbjct: 265 VCNALIGLYAKCGSLDYARELFDEMSEKDEVTYGAIISGLMLHGYVDQSLELFRGMKTQI 324

Query: 339 ------------------------CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374
                                     MQ    +PN VT    LS   +   +  G+EI  
Sbjct: 325 LSTWNAVITGLVQNNRHEGVLDLVREMQALGFRPNAVTLSSVLSTIAYFSSLKGGKEI-- 382

Query: 375 SMERDYSMKPKMEH----YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRL 430
                Y++K            ++D+  ++G L  A + V +  +  +  +W A++S+  +
Sbjct: 383 ---HSYAIKIGYHRNIYVATAIIDMYAKSGYLRGAQR-VFDQSKDRSLVIWTAIISAYAV 438

Query: 431 HDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           H D  +A    +E+ K      P  + A+    A  G  D   E+ E M
Sbjct: 439 HGDANLALGLFHEMLKQGIQPDPVTFTAVLAACAHCGMVDKAWEIFESM 487


>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
 gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
          Length = 807

 Score =  280 bits (716), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 148/438 (33%), Positives = 252/438 (57%), Gaps = 11/438 (2%)

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           L++   + ++G +PN      +L   +K   +  A  MFD++ + +++ +N +++GY + 
Sbjct: 337 LEVLDLMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKISKPSVTTWNTLLSGYGQE 396

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
              ++++ L R++     +PD  T ++IL  STC R  +     LG+ VH+  +K  +  
Sbjct: 397 ELHQDTIELFRRMQHQNVQPDRTTLAVIL--STCSRLGI---LELGKQVHSASVKLLLHN 451

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
           D  + + L+D Y K G+   A+I+F+MM E++V+C  SMISG       E+A + F++  
Sbjct: 452 DMFVASGLIDMYSKCGQVGIAQIIFNMMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMR 511

Query: 245 EKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           E  +      Y +MI   +  + +  +  ++H Q++K+ + ++V +GS+L+DMYAKCG +
Sbjct: 512 ENGMFPTESSYASMINSCA-RLSSIPQGRQIHAQVLKDGYDQNVYVGSSLIDMYAKCGNM 570

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           DDAR  F+ M  KN+  W  MI GY +NG   +A+ELF  M     +P+ VTF+  L+ C
Sbjct: 571 DDARLFFNCMIVKNIVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGC 630

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            H+GLVD+    F SME +Y ++P +EHY C++D LGRAG   + +  + +MP K ++ +
Sbjct: 631 SHSGLVDEAIAYFNSMESNYGIRPLVEHYTCLIDALGRAGRFAEVVAVIDKMPYKDDAIL 690

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W  LL++C +H + E+   AA  +F+L+  + P  YV LSN  A  G+    + +R  M 
Sbjct: 691 WEVLLAACVVHHNAELGEFAAKHLFRLDPKN-PSPYVLLSNIYATLGRHGDASAVRALMS 749

Query: 481 LRGVLKDTGCSWVGTESG 498
            RGV+K  G SWV  + G
Sbjct: 750 SRGVVKGRGYSWVNHKDG 767



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 168/352 (47%), Gaps = 26/352 (7%)

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           + G L  A  +   +P R   ++N +IA   ++    E+L + R ++  G  P  +T + 
Sbjct: 88  RAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLAS 147

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           +L A   C +   L  + GR  H   +K  +  +  +   L+  Y K G  + A  +FD 
Sbjct: 148 VLSA---CGAVAAL--DDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGSVADAVRLFDW 202

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEG--------YS 259
           M   N +  T+M+ G    G V+DA  +F    R  +  D V  ++++          Y+
Sbjct: 203 MSSPNEVSFTAMMGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGACAQACAGDYN 262

Query: 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWT 319
           ++    R A  +H  +++  F  D  +G++L+DMYAK  K+D+A +VF+ M   ++ +W 
Sbjct: 263 VA-RAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWN 321

Query: 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD 379
            ++ GYG+ G   +ALE+  +MQE   +PN VT+   L++C  A  V   R +F+ +   
Sbjct: 322 ILVTGYGQLGCYERALEVLDLMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIS-- 379

Query: 380 YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSC 428
              KP +  +  ++   G+    +  ++    M     +P+    A +LS+C
Sbjct: 380 ---KPSVTTWNTLLSGYGQEELHQDTIELFRRMQHQNVQPDRTTLAVILSTC 428



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 65/257 (25%), Positives = 127/257 (49%), Gaps = 13/257 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H+   K  +  +  ++  L+ ++ KCG +  A  +F+ + +R +  +N MI+G   
Sbjct: 437 GKQVHSASVKLLLHNDMFVASGLIDMYSKCGQVGIAQIIFNMMTERDVVCWNSMISGLAI 496

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR-SNVPLPRNLGRMVHAQILKCDV 182
           +   EE+    +++  +G  P   +++ ++  ++C R S++P     GR +HAQ+LK   
Sbjct: 497 HSLNEEAFDFFKQMRENGMFPTESSYASMI--NSCARLSSIP----QGRQIHAQVLKDGY 550

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             +  + ++L+D Y K G    AR+ F+ M+ KN++    MI G+   GF E A E+F  
Sbjct: 551 DQNVYVGSSLIDMYAKCGNMDDARLFFNCMIVKNIVAWNEMIHGYAQNGFGEKAVELFEY 610

Query: 243 TV----EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFED-VKLGSALVDMYAKC 297
            +    + D V + A++ G S S     +A+     +  N      V+  + L+D   + 
Sbjct: 611 MLTTKQKPDSVTFIAVLTGCSHS-GLVDEAIAYFNSMESNYGIRPLVEHYTCLIDALGRA 669

Query: 298 GKIDDARRVFDHMQQKN 314
           G+  +   V D M  K+
Sbjct: 670 GRFAEVVAVIDKMPYKD 686


>gi|15222917|ref|NP_175445.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75213175|sp|Q9SX45.1|PPR75_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g50270
 gi|5734776|gb|AAD50041.1|AC007980_6 Hypothetical protein [Arabidopsis thaliana]
 gi|332194410|gb|AEE32531.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 596

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 161/496 (32%), Positives = 254/496 (51%), Gaps = 30/496 (6%)

Query: 8   RSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKI 67
           R S  +  H R   ++P   TFPP L+    L +                   PF   + 
Sbjct: 86  RLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRD-----------------SNPF---QF 125

Query: 68  HAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV 127
           HAHI K G+  +  +   L+  +   G   +A ++FD    + +  +  MI G+++NG  
Sbjct: 126 HAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSA 185

Query: 128 EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD-VKADD 186
            E++    ++  +G   +  T   +LKA+      V   R  GR VH   L+   VK D 
Sbjct: 186 SEAMVYFVEMKKTGVAANEMTVVSVLKAA----GKVEDVR-FGRSVHGLYLETGRVKCDV 240

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
            + ++LVD Y K      A+ VFD M  +NV+  T++I+G++     +    +F + ++ 
Sbjct: 241 FIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKS 300

Query: 247 DIVVYNAMIEGY---SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
           D+      +         +    +   VHC +IKN    +   G+ L+D+Y KCG +++A
Sbjct: 301 DVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEA 360

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
             VF+ + +KNV+TWT+MI+G+  +G    A +LF  M    V PN VTF+  LSAC H 
Sbjct: 361 ILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHG 420

Query: 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA 423
           GLV++GR +F SM+  ++M+PK +HYACMVDL GR G LE+A   +  MP +P + VW A
Sbjct: 421 GLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGA 480

Query: 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483
           L  SC LH D E+   AA+ + KL  +   G Y  L+N  + +  WD V  +R++MK + 
Sbjct: 481 LFGSCLLHKDYELGKYAASRVIKLQPS-HSGRYTLLANLYSESQNWDEVARVRKQMKDQQ 539

Query: 484 VLKDTGCSWVGTESGL 499
           V+K  G SW+  +  L
Sbjct: 540 VVKSPGFSWIEVKGKL 555


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 144/434 (33%), Positives = 261/434 (60%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H  + KT  + +  + + LL L+ +CG    A + F ++P+  +  +++MI+ + +
Sbjct: 166 GKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQ 225

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +GQ E++L +  ++  +   P+ +TFS +L+AS    S      +L + +H   LK  + 
Sbjct: 226 SGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASADIES-----LDLSKTIHGHALKAGLS 280

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
            D  +  AL+  Y K G    +  +F+ + ++N +   ++I  ++  G  E A  +F   
Sbjct: 281 TDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNM 340

Query: 241 -RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            R  V+   V Y++++   + ++      L+VHC   K ++ +DV +G+AL+DMYAKCG 
Sbjct: 341 LRYQVQATEVTYSSILRACA-TLAALELGLQVHCLTAKTIYGQDVAVGNALIDMYAKCGS 399

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I DAR +FD +  ++  +W ++I GY  +G   +A+++F +M+E   +P+ +TF+G LSA
Sbjct: 400 IKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSA 459

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C + G +D+G++ F SM++DY ++P MEHY CMV L+GR+G+L+QA+KF+ ++P +P+  
Sbjct: 460 CSNTGRLDEGKQYFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVM 519

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +W ALL +C +H+DVE+  I+A  + +L   D   ++V LSN  A A +W +V  +R+ M
Sbjct: 520 IWRALLGACVIHNDVELGRISAQRVLELEPRDE-ASHVLLSNIYARARRWGNVAYVRKHM 578

Query: 480 KLRGVLKDTGCSWV 493
           K +GV K+ G SW+
Sbjct: 579 KRKGVKKEPGLSWI 592



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 113/449 (25%), Positives = 211/449 (46%), Gaps = 25/449 (5%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           NP   T++   L+  ++ +    G  +H  + K G   NT I   L+  +   G +  A 
Sbjct: 45  NPFVFTTV---LKLLVSMEWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAR 101

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           ++FDE+  + + ++  MIA Y +N    E+L    ++  +G +P+ +TF+ +LKA    +
Sbjct: 102 EVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQ 161

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           +      + G+ VH  +LK + + D  +   L++ Y + G    A   F  M + +VI  
Sbjct: 162 N-----FDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPW 216

Query: 221 TSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLI 276
           + MIS F   G  E A EIF    R  V  +   ++++++  S  IE+   +  +H   +
Sbjct: 217 SFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQA-SADIESLDLSKTIHGHAL 275

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           K     DV + +AL+  YAKCG I+ +  +F+ +  +N  +W ++I  Y + G+  +AL 
Sbjct: 276 KAGLSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALS 335

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF-ESMERDYSMKPKMEHYACMVDL 395
           LF  M    VQ   VT+   L AC     ++ G ++   + +  Y     + +   ++D+
Sbjct: 336 LFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKTIYGQDVAVGN--ALIDM 393

Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH----DDVEMANIAANEIFKLNAND 451
             + GS++ A +F+ +M +  +   W A++    +H    + ++M N+      K +   
Sbjct: 394 YAKCGSIKDA-RFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELT 452

Query: 452 RPGAYVALSNTLAAAGKWDSVTELREKMK 480
             G   A SNT    G+ D   +    MK
Sbjct: 453 FVGVLSACSNT----GRLDEGKQYFTSMK 477



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 156/333 (46%), Gaps = 18/333 (5%)

Query: 102 MFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161
           +FDE+P+R   ++  +I GY ++ +  E+  L  +L   G   + + F+ +LK       
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSME- 60

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
                  LGR+VH  +LK    ++  + TAL+D+Y   G  S AR VFD +  K+++  T
Sbjct: 61  ----WAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWT 116

Query: 222 SMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY---SISIETARKALEVHCQLIKN 278
            MI+ +       +A E F +         N    G     + ++       VHC ++K 
Sbjct: 117 GMIASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKT 176

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
            +  D+ +G  L+++Y +CG  DDA R F  M + +V  W+ MI  + ++G   +ALE+F
Sbjct: 177 NYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIF 236

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL-- 396
           C M+   V PN  TF   L A      +D  + I       +++K  +     + + L  
Sbjct: 237 CQMRRAFVIPNQFTFSSVLQASADIESLDLSKTI-----HGHALKAGLSTDVFVSNALMA 291

Query: 397 --GRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
              + G +EQ+++    + ++ N   W  ++ S
Sbjct: 292 CYAKCGCIEQSMELFEALSDR-NDVSWNTIIVS 323



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 19/230 (8%)

Query: 207 IVFDMMLEKNVICSTSMISGF-MSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSIS 261
           +VFD M E+N +   ++I G+  S  F+E A E+F +      E +  V+  +++   +S
Sbjct: 1   MVFDEMPERNTVSFVTLIHGYAQSNKFIE-AFELFARLHGEGHELNPFVFTTVLK-LLVS 58

Query: 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
           +E A     VH  ++K  +  +  +G+AL+D Y+  G +  AR VFD +  K++ +WT M
Sbjct: 59  MEWAELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGM 118

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM----- 376
           I  Y +N   ++ALE F  M+    +PN  TF G L AC      D G+ +  S+     
Sbjct: 119 IASYAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNY 178

Query: 377 ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           ERD  +         +++L  R G  + A +   +MP K +   W+ ++S
Sbjct: 179 ERDLYVGVG------LLELYTRCGDNDDAWRAFGDMP-KNDVIPWSFMIS 221


>gi|224089505|ref|XP_002308737.1| predicted protein [Populus trichocarpa]
 gi|222854713|gb|EEE92260.1| predicted protein [Populus trichocarpa]
          Length = 590

 Score =  280 bits (715), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 153/438 (34%), Positives = 265/438 (60%), Gaps = 10/438 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IHA +  +  + +  +   LL L+ KCG L YA ++FDE+  R +  +  +I GY +
Sbjct: 34  GKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGYSQ 93

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           + + +++L L+ +++  G +P+ +T + +LKA++   S   L    GR +H   L+    
Sbjct: 94  HDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQ---GRQLHGLCLRYGYD 150

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
           ++  +  A++D Y +      A+++FD+M+ KN +   ++I+G+  +G  + A  +F   
Sbjct: 151 SNVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNM 210

Query: 241 -RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            R+ V+     Y++++   + S+ +  +   VH  +IK        +G+ L+DMYAK G 
Sbjct: 211 LRENVKPTHFTYSSVLCACA-SMGSLEQGKWVHALMIKWGEKLVAFVGNTLLDMYAKSGS 269

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I+DA++VFD + +++V +W SM+ GY ++G    AL+ F  M    + PN +TFL  L+A
Sbjct: 270 IEDAKKVFDRLAKRDVVSWNSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTA 329

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C HAGL+D+GR  F+ M++ Y+++P++ HY  MVDLLGRAG L++A++F+ EMP KP + 
Sbjct: 330 CSHAGLLDEGRHYFDMMKK-YNVEPQISHYVTMVDLLGRAGHLDRAIQFISEMPIKPTAA 388

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW ALL +CR+H ++E+   AA  IF+L+++  PG +V L N  A AG+W+   ++R+ M
Sbjct: 389 VWGALLGACRMHKNMELGGYAAECIFELDSH-YPGTHVLLYNIYALAGRWNDAAKVRKMM 447

Query: 480 KLRGVLKDTGCSWVGTES 497
           K  GV K+  CSWV  E+
Sbjct: 448 KESGVKKEPACSWVEMEN 465



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/269 (26%), Positives = 139/269 (51%), Gaps = 7/269 (2%)

Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
           N G+++HA +L    + D V+   L++ Y K G   YAR +FD M  ++V+  T++I+G+
Sbjct: 32  NEGKIIHALLLNSRFRDDLVMQNTLLNLYAKCGDLVYARKLFDEMSSRDVVTWTALITGY 91

Query: 228 MSQGFVEDA----EEIFRKTVEKDIVVYNAMIEGYS-ISIETARKALEVHCQLIKNVFFE 282
                 +DA     E+ R  ++ +     ++++  S +      +  ++H   ++  +  
Sbjct: 92  SQHDRPQDALLLLPEMLRIGLKPNQFTLASLLKAASGVGSTDVLQGRQLHGLCLRYGYDS 151

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           +V +  A++DMYA+C  +++A+ +FD M  KN  +W ++I GY + G  ++A  LF  M 
Sbjct: 152 NVYVSCAILDMYARCHHLEEAQLIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNML 211

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
              V+P + T+   L AC   G +++G+ +   M + +  K        ++D+  ++GS+
Sbjct: 212 RENVKPTHFTYSSVLCACASMGSLEQGKWVHALMIK-WGEKLVAFVGNTLLDMYAKSGSI 270

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           E A K V +   K +   W ++L+    H
Sbjct: 271 EDAKK-VFDRLAKRDVVSWNSMLTGYSQH 298



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 143/328 (43%), Gaps = 53/328 (16%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           N  T  SL  A     ++D    G ++H    + G   N  +S  +L ++ +C  L+ A 
Sbjct: 115 NQFTLASLLKAASGVGSTDV-LQGRQLHGLCLRYGYDSNVYVSCAILDMYARCHHLEEAQ 173

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
            +FD +  +   ++N +IAGY + GQ +++  L   ++    +P  +T+S +L A   C 
Sbjct: 174 LIFDVMVSKNEVSWNALIAGYARKGQGDKAFCLFSNMLRENVKPTHFTYSSVLCA---CA 230

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           S   L +  G+ VHA ++K   K    +   L+D Y K G    A+ VFD + +++V+  
Sbjct: 231 SMGSLEQ--GKWVHALMIKWGEKLVAFVGNTLLDMYAKSGSIEDAKKVFDRLAKRDVVSW 288

Query: 221 TSMISGFMSQGF----VEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLI 276
            SM++G+   G     ++  EE+ R  +  + + +  ++   S                 
Sbjct: 289 NSMLTGYSQHGLGKVALQRFEEMLRTRIAPNDITFLCVLTACS----------------- 331

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV----FTWTSMIDGYGKNGNPN 332
                                G +D+ R  FD M++ NV      + +M+D  G+ G+ +
Sbjct: 332 -------------------HAGLLDEGRHYFDMMKKYNVEPQISHYVTMVDLLGRAGHLD 372

Query: 333 QALELFCMMQECCVQPNYVTFLGALSAC 360
           +A++    + E  ++P    +   L AC
Sbjct: 373 RAIQF---ISEMPIKPTAAVWGALLGAC 397


>gi|224134923|ref|XP_002327523.1| predicted protein [Populus trichocarpa]
 gi|222836077|gb|EEE74498.1| predicted protein [Populus trichocarpa]
          Length = 635

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 172/487 (35%), Positives = 260/487 (53%), Gaps = 64/487 (13%)

Query: 63  YGLK-IHAHITKTGVKPNTNISIKLLILHLKC----GALKYAGQMFDELPQRTLSAYNYM 117
           Y LK IH+   KTG+  N  I  K  IL   C    G + YA Q+FD +P+ ++ ++N M
Sbjct: 28  YHLKQIHSRTIKTGIICNPIIQNK--ILSFCCSREFGDMCYARQLFDTIPEPSVFSWNIM 85

Query: 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQI 177
             GY +    +  +SL  +++    +PD YT+  + K  T  RS   +   LGR +H  +
Sbjct: 86  FKGYSRIACPKLGVSLYLEMLERNVKPDCYTYPFLFKGFT--RS---VALQLGRELHCHV 140

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM-----------------MLEKNVICS 220
           +K  + ++   + AL++ Y   G    AR +FDM                  ++K+VI  
Sbjct: 141 VKYGLDSNVFAHNALINMYSLCGLIDMARGIFDMSCKSDVVTWNAMISGYNRIKKDVISW 200

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY---------------------- 258
           T++++GF++ G V+ A + F K  E+D V + AMI+GY                      
Sbjct: 201 TAIVTGFVNTGQVDAARKYFHKMPERDHVSWTAMIDGYLRLNCYKEALMLFREMQTSKIK 260

Query: 259 -----SISIETA---RKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRV 306
                 +S+ TA     ALE    +   + KN    D  +G+AL+DMY KCG ++ A  +
Sbjct: 261 PDEFTMVSVLTACAQLGALELGEWIRTYIDKNKVKNDTFVGNALIDMYFKCGNVEMALSI 320

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           F+ + Q++ FTWT+M+ G   NG   +AL +F  M +  V P+ VT++G LSAC H G+V
Sbjct: 321 FNTLPQRDKFTWTAMVVGLAINGCGEEALNMFSQMLKASVTPDEVTYVGVLSACTHTGMV 380

Query: 367 DKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           D+G++ F SM   + ++P + HY CMVDLLG+AG L++A + +  MP KPNS VW ALL 
Sbjct: 381 DEGKKFFASMTARHGIEPNIAHYGCMVDLLGKAGHLKEAHEIIKNMPMKPNSIVWGALLG 440

Query: 427 SCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLK 486
           +CR+H D EMA  A  +I +L  N+    YV   N  AA  KWD + ELR+ M  RG+ K
Sbjct: 441 ACRIHKDAEMAERAIEQILELEPNN-GAVYVLQCNIYAACNKWDKLRELRQVMMDRGIKK 499

Query: 487 DTGCSWV 493
             GCS +
Sbjct: 500 TPGCSLI 506


>gi|296087629|emb|CBI34885.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 162/443 (36%), Positives = 250/443 (56%), Gaps = 41/443 (9%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           +L  +++ G L+ A ++FDE+P+R   +++ MIA Y ++G  EE+L L  K+V  G +P+
Sbjct: 256 ILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPN 315

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
              F+  L A    R+      + G  +H  + K  +  D  + ++L+D Y K GK    
Sbjct: 316 ISCFACTLSALASLRA-----LSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDG 370

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY------- 258
           R+VFD++LEKNV+C  SM+ G+   G +E+ EE+F    EK+ V +  +I GY       
Sbjct: 371 RLVFDLILEKNVVCWNSMVGGYSINGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCE 430

Query: 259 ---------------------------SISIETARKALEVHCQLIKNVFFEDVKLGSALV 291
                                        SI +  K + VH ++IK     D+ +G+AL 
Sbjct: 431 KVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALT 490

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNY 350
           DMYAKCG I  +++VF+ M +KN  +WT MI G  ++G   ++L LF  M+    V PN 
Sbjct: 491 DMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNE 550

Query: 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410
           +  L  L AC H GLVDKG   F SME+ Y +KPK +HY C+VDLL R+G L +A +F+ 
Sbjct: 551 LMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIR 610

Query: 411 EMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
            +P +P ++ WAALLS C+ + D ++A   A ++++L  N+  G YV LSN  A+AG+W 
Sbjct: 611 TIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQLAENNSAG-YVLLSNIYASAGRWI 669

Query: 471 SVTELREKMKLRGVLKDTGCSWV 493
            V+ +R+ M+ +G+ K  GCSWV
Sbjct: 670 DVSNIRKLMREKGLKKSGGCSWV 692



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 147/349 (42%), Gaps = 78/349 (22%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           A +  S L+ + N      G  +HAH+ KTG      I+IKLLIL+L C       Q+  
Sbjct: 21  AQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVK 80

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP 164
           E     L   N MI+ Y++ G      +LV+  +   E P+                   
Sbjct: 81  EFDGSDLVVSNCMISAYVQWG------NLVQARLLFDEMPE------------------- 115

Query: 165 LPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
             RN                 +V ++AL+   +K G+   +   F+    +NV+  T+ I
Sbjct: 116 --RN-----------------EVSWSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAI 156

Query: 225 SGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIE----------GYSISIETARKALE 270
           SGF+  G   +A ++F + +E  +    V + +++           G SI     +   E
Sbjct: 157 SGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFE 216

Query: 271 VHCQLIKNVFFEDVKLG--------------------SALVDMYAKCGKIDDARRVFDHM 310
            +  +  ++    +++G                    +A++D Y + G + +ARR+FD M
Sbjct: 217 HYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEM 276

Query: 311 QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
            ++N  +W++MI  Y ++G   +AL+LF  M +   +PN   F   LSA
Sbjct: 277 PERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSA 325



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/305 (27%), Positives = 135/305 (44%), Gaps = 56/305 (18%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYM------ 117
           G+ IH H+TK G+  +  I   L+ L+ KCG       +FD + ++ +  +N M      
Sbjct: 335 GINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSI 394

Query: 118 -------------------------IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
                                    IAGYL+N Q E+ L +   L+ SG+ P+  TFS +
Sbjct: 395 NGRLEETEELFELIPEKNDVSWGTIIAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSV 454

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L A   C S   L +  G  VH +I+K  ++ D  + TAL D Y K G    ++ VF+ M
Sbjct: 455 LCA---CASIASLDK--GMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERM 509

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVH 272
            EKN I  T MI G    GF  ++  +F +      V  N ++    +S+  A      H
Sbjct: 510 PEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELM---LLSVLFACS----H 562

Query: 273 CQLI-KNVFF----EDV-------KLGSALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWT 319
           C L+ K +++    E V       K  + +VD+ ++ G++ +A      +  Q     W 
Sbjct: 563 CGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWA 622

Query: 320 SMIDG 324
           +++ G
Sbjct: 623 ALLSG 627


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 153/453 (33%), Positives = 256/453 (56%), Gaps = 8/453 (1%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           T  +  + L   I  D    G +IH+ + KT    N  +S  LL  + K  ++  A ++F
Sbjct: 249 TEFTFAAVLCANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLF 308

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           DE+P++   +YN +I+GY  +G+ + +  L R+L  +      + F+ +L  +    SN 
Sbjct: 309 DEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIA----SNT 364

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
            L   +GR +HAQ +     ++ ++  +LVD Y K GK   A ++F  +  ++ +  T+M
Sbjct: 365 -LDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAM 423

Query: 224 ISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY---SISIETARKALEVHCQLIKNVF 280
           IS ++ +GF E+  ++F K  +  ++   A        S SI +     ++H  +IK+ F
Sbjct: 424 ISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGF 483

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             +V  GSAL+D+YAKCG I DA + F  M  +N+ +W +MI  Y +NG     L+ F  
Sbjct: 484 MSNVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKE 543

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           M    +QP+ V+FLG LSAC H+GLV++G   F SM + Y + P+ EHYA +VD+L R+G
Sbjct: 544 MVLSGLQPDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSG 603

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
              +A K + EMP  P+  +W+++L++CR+H + E+A  AA+++F +        YV +S
Sbjct: 604 RFNEAEKLMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMS 663

Query: 461 NTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           N  AAAG+W++V+++ + M+ RGV K    SWV
Sbjct: 664 NIYAAAGQWENVSKVHKAMRDRGVKKLPAYSWV 696



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 186/368 (50%), Gaps = 16/368 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++   I K G      +   L+  + K   L  A Q+F E+P+    +YN MI GY K+G
Sbjct: 170 QVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDG 229

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             E++++L  ++ +SG +P  +TF+ +L A+      V     LG+ +H+ ++K +   +
Sbjct: 230 LDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIV-----LGQQIHSFVIKTNFVWN 284

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK--- 242
             +  AL+D Y K      AR +FD M E++ +    +ISG+   G  + A ++FR+   
Sbjct: 285 VFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQF 344

Query: 243 -TVEKDIVVYNAM--IEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
              ++    +  M  I   ++  E  R   ++H Q I      ++ +G++LVDMYAKCGK
Sbjct: 345 TAFDRKQFPFATMLSIASNTLDWEMGR---QIHAQTIVTTADSEILVGNSLVDMYAKCGK 401

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
            ++A  +F ++  ++   WT+MI  Y + G   + L+LF  M++  V  +  TF   L A
Sbjct: 402 FEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRA 461

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
                 +  G+++   + +   M       A ++D+  + GS++ A++   EMP++ N  
Sbjct: 462 SASIASLSLGKQLHSFIIKSGFMSNVFSGSA-LLDVYAKCGSIKDAVQTFQEMPDR-NIV 519

Query: 420 VWAALLSS 427
            W A++S+
Sbjct: 520 SWNAMISA 527



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 172/395 (43%), Gaps = 41/395 (10%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG- 125
           I A I KTG  P+T+ S   +   LK G L  A Q+F+++P +   + N MI+GY+K+G 
Sbjct: 39  IDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGN 98

Query: 126 ------------------------------QVEESLSLVRKLVSSGERPDGYTFSMILKA 155
                                         Q +E+  L  ++   G  PD  TF  +L  
Sbjct: 99  LGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLL-- 156

Query: 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
           S C   N     N    V  QI+K    +  ++   LVDSY K  +   A  +F  M E 
Sbjct: 157 SGC---NGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEI 213

Query: 216 NVICSTSMISGFMSQGFVEDAEEIF---RKTVEKDIVVYNAMIEGYSISIETARKALEVH 272
           + +   +MI+G+   G  E A  +F   + +  K      A +   +I ++      ++H
Sbjct: 214 DSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAAVLCANIGLDDIVLGQQIH 273

Query: 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPN 332
             +IK  F  +V + +AL+D Y+K   + DAR++FD M +++  ++  +I GY  +G   
Sbjct: 274 SFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHK 333

Query: 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACM 392
            A +LF  +Q          F   LS   +    + GR+I  +     +   ++     +
Sbjct: 334 YAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQI-HAQTIVTTADSEILVGNSL 392

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
           VD+  + G  E+A      +  + ++  W A++S+
Sbjct: 393 VDMYAKCGKFEEAEMIFTNLTHR-SAVPWTAMISA 426



 Score = 92.8 bits (229), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/302 (26%), Positives = 138/302 (45%), Gaps = 41/302 (13%)

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVF 209
           S  LK+S+     + L  N+   + A+I+K     D       V +++K G+ S AR +F
Sbjct: 18  STFLKSSSLQSPKLRL--NVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLF 75

Query: 210 DMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS---------- 259
           + M  KN + +  MISG++  G + +A ++F   VE+  V +  +I GYS          
Sbjct: 76  EKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFE 135

Query: 260 -----------------ISI-------ETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
                            +++       E   +  +V  Q+IK  +   + +G+ LVD Y 
Sbjct: 136 LFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYC 195

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           K  ++D A ++F  M + +  ++ +MI GY K+G   +A+ LF  MQ   ++P   TF  
Sbjct: 196 KSNRLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFAA 255

Query: 356 ALSACGHAGLVD--KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
            L  C + GL D   G++I   + +   +       A ++D   +  S+  A K   EMP
Sbjct: 256 VL--CANIGLDDIVLGQQIHSFVIKTNFVWNVFVSNA-LLDFYSKHDSVIDARKLFDEMP 312

Query: 414 EK 415
           E+
Sbjct: 313 EQ 314


>gi|15221304|ref|NP_177599.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169837|sp|Q9CA56.1|PP121_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74600, chloroplastic; Flags: Precursor
 gi|12324789|gb|AAG52351.1|AC011765_3 hypothetical protein; 84160-81473 [Arabidopsis thaliana]
 gi|332197493|gb|AEE35614.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 895

 Score =  279 bits (714), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 149/434 (34%), Positives = 253/434 (58%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H +  K+G+  +  +   L  L+ KCG+L+ + ++F  +P +  + +  MI+G+ +
Sbjct: 469 GKQVHGYTLKSGLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNE 528

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G + E++ L  +++  G  PD  T + +L   T C S+  LPR  G+ +H   L+  + 
Sbjct: 529 YGYLREAIGLFSEMLDDGTSPDESTLAAVL---TVCSSHPSLPR--GKEIHGYTLRAGID 583

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               L +ALV+ Y K G    AR V+D + E + +  +S+ISG+   G ++D   +FR  
Sbjct: 584 KGMDLGSALVNMYSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDM 643

Query: 244 V----EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           V      D    +++++  ++S E++  A +VH  + K     +  +GS+L+ MY+K G 
Sbjct: 644 VMSGFTMDSFAISSILKAAALSDESSLGA-QVHAYITKIGLCTEPSVGSSLLTMYSKFGS 702

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           IDD  + F  +   ++  WT++I  Y ++G  N+AL+++ +M+E   +P+ VTF+G LSA
Sbjct: 703 IDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSA 762

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H GLV++      SM +DY ++P+  HY CMVD LGR+G L +A  F+  M  KP++ 
Sbjct: 763 CSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDAL 822

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW  LL++C++H +VE+  +AA +  +L  +D  GAY++LSN LA  G+WD V E R+ M
Sbjct: 823 VWGTLLAACKIHGEVELGKVAAKKAIELEPSD-AGAYISLSNILAEVGEWDEVEETRKLM 881

Query: 480 KLRGVLKDTGCSWV 493
           K  GV K+ G S V
Sbjct: 882 KGTGVQKEPGWSSV 895



 Score =  114 bits (286), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 187/407 (45%), Gaps = 34/407 (8%)

Query: 67  IHAHITKTGVKP-NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           + AH+ +  + P +  ++  LL  +   G++  A ++FD +PQ  + + N MI+GY ++ 
Sbjct: 70  LQAHLLRRYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHR 129

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             EESL    K+   G   +  ++  ++ A  C     PL      +V    +K      
Sbjct: 130 LFEESLRFFSKMHFLGFEANEISYGSVISA--CSALQAPL---FSELVCCHTIKMGYFFY 184

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV- 244
           +V+ +AL+D + K  +   A  VF   L  NV C  ++I+G +         ++F +   
Sbjct: 185 EVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCV 244

Query: 245 ---EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
              + D   Y++++   + S+E  R    V  ++IK    EDV + +A+VD+YAKCG + 
Sbjct: 245 GFQKPDSYTYSSVLAACA-SLEKLRFGKVVQARVIK-CGAEDVFVCTAIVDLYAKCGHMA 302

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           +A  VF  +   +V +WT M+ GY K+ +   ALE+F  M+   V+ N  T    +SACG
Sbjct: 303 EAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACG 362

Query: 362 HAGLVDKGREIFE-SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
              +V +  ++     +  + +   +   A ++ +  ++G         +++ E+   D+
Sbjct: 363 RPSMVCEASQVHAWVFKSGFYLDSSVA--AALISMYSKSGD--------IDLSEQVFEDL 412

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG 467
                      DD++  NI    I   + + +PG  + L   +   G
Sbjct: 413 -----------DDIQRQNIVNVMITSFSQSKKPGKAIRLFTRMLQEG 448



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/279 (25%), Positives = 143/279 (51%), Gaps = 16/279 (5%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP--QRTLSAYNYMIAGYLK 123
           ++HA + K+G   +++++  L+ ++ K G +  + Q+F++L   QR  +  N MI  + +
Sbjct: 372 QVHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQ-NIVNVMITSFSQ 430

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           + +  +++ L  +++  G R D ++   +L    C         NLG+ VH   LK  + 
Sbjct: 431 SKKPGKAIRLFTRMLQEGLRTDEFSVCSLLSVLDCL--------NLGKQVHGYTLKSGLV 482

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  + ++L   Y K G    +  +F  +  K+  C  SMISGF   G++ +A  +F + 
Sbjct: 483 LDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEM 542

Query: 244 VEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           ++       + +    +++ ++  +L    E+H   ++    + + LGSALV+MY+KCG 
Sbjct: 543 LDDGTSPDESTLAAV-LTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKCGS 601

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
           +  AR+V+D + + +  + +S+I GY ++G       LF
Sbjct: 602 LKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLF 640



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 133/307 (43%), Gaps = 68/307 (22%)

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
           C+++   +L   L+  Y+         + FD+ L K      S++S + + G + DA ++
Sbjct: 62  CNLRTTKILQAHLLRRYL---------LPFDVFLTK------SLLSWYSNSGSMADAAKL 106

Query: 240 FRKTVEKDIVVYNAMIEGYSI---------------------------SIETARKALE-- 270
           F    + D+V  N MI GY                             S+ +A  AL+  
Sbjct: 107 FDTIPQPDVVSCNIMISGYKQHRLFEESLRFFSKMHFLGFEANEISYGSVISACSALQAP 166

Query: 271 -----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
                V C  IK  +F    + SAL+D+++K  + +DA +VF      NV+ W ++I G 
Sbjct: 167 LFSELVCCHTIKMGYFFYEVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGA 226

Query: 326 GKNGNPNQALELFCMMQECCV---QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382
            +N N     +LF    E CV   +P+  T+   L+AC     ++K R  F  + +   +
Sbjct: 227 LRNQNYGAVFDLF---HEMCVGFQKPDSYTYSSVLAACAS---LEKLR--FGKVVQARVI 278

Query: 383 KPKMEH-YAC--MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANI 439
           K   E  + C  +VDL  + G + +A++    +P  P+   W  +LS     +D      
Sbjct: 279 KCGAEDVFVCTAIVDLYAKCGHMAEAMEVFSRIP-NPSVVSWTVMLSGYTKSNDA----F 333

Query: 440 AANEIFK 446
           +A EIFK
Sbjct: 334 SALEIFK 340



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/200 (22%), Positives = 96/200 (48%), Gaps = 5/200 (2%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           ++ S L+    SD    G ++HA+ITK G+    ++   LL ++ K G++    + F ++
Sbjct: 654 AISSILKAAALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQI 713

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
               L A+  +IA Y ++G+  E+L +   +   G +PD  TF  +L A     S+  L 
Sbjct: 714 NGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSAC----SHGGLV 769

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR-IVFDMMLEKNVICSTSMIS 225
                 +++ +    ++ ++  Y  +VD+  + G+   A   + +M ++ + +   ++++
Sbjct: 770 EESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDALVWGTLLA 829

Query: 226 GFMSQGFVEDAEEIFRKTVE 245
                G VE  +   +K +E
Sbjct: 830 ACKIHGEVELGKVAAKKAIE 849


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  279 bits (713), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 156/466 (33%), Positives = 262/466 (56%), Gaps = 14/466 (3%)

Query: 32  KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHL 91
           ++++   + N  T  SL SA     +    +YG  IHA + K G + +  +   L+ +++
Sbjct: 421 RMRHSGVIPNQFTLASLVSAA---TDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYM 477

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           K G+++   ++F+    R L ++N +++G+  N   +  L +  ++++ G  P+ YTF  
Sbjct: 478 KIGSVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFIS 537

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           IL++   C S   +  +LG+ VHAQI+K  +  +D + TALVD Y K      A  +F+ 
Sbjct: 538 ILRS---CSSLSDV--DLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNR 592

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARK 267
           ++++++   T +++G+   G  E A + F    R+ V+ +     + + G S  I T   
Sbjct: 593 LIKRDLFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCS-RIATLDS 651

Query: 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
             ++H   IK     D+ + SALVDMYAKCG ++DA  VFD +  ++  +W ++I GY +
Sbjct: 652 GRQLHSMAIKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQ 711

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           +G   +AL+ F  M +    P+ VTF+G LSAC H GL+++G++ F S+ + Y + P +E
Sbjct: 712 HGQGGKALKAFEAMLDEGTVPDEVTFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIE 771

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           HYACMVD+LGRAG   +   F+ EM    N  +W  +L +C++H ++E    AA ++F+L
Sbjct: 772 HYACMVDILGRAGKFHEVESFIEEMKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFEL 831

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
              +    Y+ LSN  AA G WD VT +R  M  RGV K+ GCSWV
Sbjct: 832 EP-EIDSNYILLSNMFAAKGMWDDVTNVRALMSTRGVKKEPGCSWV 876



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 181/374 (48%), Gaps = 14/374 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH  + K+G+ P++++   L+ ++ KCG+  YA ++F E+P+R + ++  +I G++ 
Sbjct: 147 GKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGFVA 206

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G    +++L  ++   G   + +T++  LKA + C     L    G+ VHA+ +K    
Sbjct: 207 EGYGSGAVNLFCEMRREGVEANEFTYATALKACSMC-----LDLEFGKQVHAEAIKVGDF 261

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +D  + +ALVD Y K G+   A  VF  M ++N +   ++++GF   G  E    +F + 
Sbjct: 262 SDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRM 321

Query: 244 VEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
              +I       + +++G + S    R    VH   I+     D  +   LVDMY+KCG 
Sbjct: 322 TGSEINFSKFTLSTVLKGCANS-GNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGL 380

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
             DA +VF  ++  +V +W+++I    + G   +A E+F  M+   V PN  T    +SA
Sbjct: 381 AGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSA 440

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
               G +  G  I   + + Y  +        +V +  + GS++   + V E     +  
Sbjct: 441 ATDLGDLYYGESIHACVCK-YGFEYDNTVCNALVTMYMKIGSVQDGCR-VFEATTNRDLI 498

Query: 420 VWAALLSSCRLHDD 433
            W ALLS    HD+
Sbjct: 499 SWNALLSG--FHDN 510



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 110/479 (22%), Positives = 214/479 (44%), Gaps = 56/479 (11%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +L + L+   NS     G  +H+   + G + +  IS  L+ ++ KCG    A ++F  +
Sbjct: 332 TLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAGDALKVFVRI 391

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
               + +++ +I    + GQ  E+  + +++  SG  P+ +T + ++ A+T         
Sbjct: 392 EDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAAT--------- 442

Query: 167 RNLGRM-----VHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
            +LG +     +HA + K   + D+ +  ALV  Y+K G       VF+    +++I   
Sbjct: 443 -DLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIGSVQDGCRVFEATTNRDLISWN 501

Query: 222 SMISGFMSQGFVEDAEEIFRKTVEK----DIVVYNAMIEGYSISIETARKALEVHCQLIK 277
           +++SGF      +    IF + + +    ++  + +++   S S+       +VH Q++K
Sbjct: 502 ALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCS-SLSDVDLGKQVHAQIVK 560

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
           N    +  +G+ALVDMYAK   ++DA  +F+ + ++++F WT ++ GY ++G   +A++ 
Sbjct: 561 NSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKC 620

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
           F  MQ   V+PN  T   +LS C     +D GR++  SM         M   + +VD+  
Sbjct: 621 FIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQL-HSMAIKAGQSGDMFVASALVDMYA 679

Query: 398 RAGSLE----------------------------------QALKFVLEMPEKPNSDVWAA 423
           + G +E                                  +A + +L+    P+   +  
Sbjct: 680 KCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFIG 739

Query: 424 LLSSCRLHDDVEMANIAANEIFKL-NANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
           +LS+C     +E      N + K+         Y  + + L  AGK+  V    E+MKL
Sbjct: 740 VLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKL 798



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 84/283 (29%), Positives = 151/283 (53%), Gaps = 11/283 (3%)

Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
           N G+ +H Q++K  +  D  L+ +LV+ Y K G  +YA  VF  + E++V+  T++I+GF
Sbjct: 145 NEGKAIHGQVIKSGINPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVVSWTALITGF 204

Query: 228 MSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFED 283
           +++G+   A  +F    R+ VE +   Y   ++  S+ ++      +VH + IK   F D
Sbjct: 205 VAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDL-EFGKQVHAEAIKVGDFSD 263

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
           + +GSALVD+YAKCG++  A RVF  M ++N  +W ++++G+ + G+  + L LFC M  
Sbjct: 264 LFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMTG 323

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE 403
             +  +  T    L  C ++G +  G +I  S+      +       C+VD+  + G   
Sbjct: 324 SEINFSKFTLSTVLKGCANSGNLRAG-QIVHSLAIRIGCELDEFISCCLVDMYSKCGLAG 382

Query: 404 QALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446
            ALK  + + E P+   W+A+++      D +  +  A E+FK
Sbjct: 383 DALKVFVRI-EDPDVVSWSAIITCL----DQKGQSREAAEVFK 420



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 181/403 (44%), Gaps = 43/403 (10%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G ++HA   K G   +  +   L+ L+ KCG +  A ++F  +P++   ++N ++ G+ 
Sbjct: 247 FGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFA 306

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           + G  E+ L+L  ++  S      +T S +LK    C ++  L    G++VH+  ++   
Sbjct: 307 QMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKG---CANSGNL--RAGQIVHSLAIRIGC 361

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           + D+ +   LVD Y K G    A  VF  + + +V+  +++I+    +G   +A E+F++
Sbjct: 362 ELDEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKR 421

Query: 243 TVEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
            +    V+ N       +S  T    L     +H  + K  F  D  + +ALV MY K G
Sbjct: 422 -MRHSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNTVCNALVTMYMKIG 480

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            + D  RVF+    +++ +W +++ G+  N   +  L +F  M      PN  TF+  L 
Sbjct: 481 SVQDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILR 540

Query: 359 ACGHAGLVDKGREI----------------------------FESMERDYSMKPKMEHYA 390
           +C     VD G+++                             E  E  ++   K + +A
Sbjct: 541 SCSSLSDVDLGKQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFA 600

Query: 391 CMVDLLGRA--GSLEQALKFVLEMPE---KPNSDVWAALLSSC 428
             V + G A  G  E+A+K  ++M     KPN    A+ LS C
Sbjct: 601 WTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGC 643


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 155/437 (35%), Positives = 251/437 (57%), Gaps = 17/437 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH +I +     +  +   L+ ++ KC  ++ A  +FD      +   + MI+GY+ 
Sbjct: 368 GKEIHGYIVRNCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGSTMISGYVL 427

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N   E ++ + R L++ G +P+    +  L A   C S   +   +G+ +H  +LK   +
Sbjct: 428 NRMSEAAVKMFRYLLALGIKPNAVMVASTLPA---CASMAAM--RIGQELHGYVLKNAYE 482

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               + +AL+D Y K G+   +  +F  M  K+ +   SMIS F   G  E+A ++FR+ 
Sbjct: 483 GRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDLFRQM 542

Query: 244 VEKDIVVYNAMIEGYSISIETARKAL-------EVHCQLIKNVFFEDVKLGSALVDMYAK 296
           + + +   N  I     SI +A   L       E+H  +IK     D+   SAL+DMY K
Sbjct: 543 IMEGVKYNNVTIS----SILSACAGLPAIYYGKEIHGIIIKGPIRADLFAESALIDMYGK 598

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG ++ A RVF+HM +KN  +W S+I  YG +G   ++++L C MQE   + ++VTFL  
Sbjct: 599 CGNLELALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFLAL 658

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           +SAC HAG V +G  +F  M  +Y ++P++EH +CMVDL  RAG L++A++F+ +MP KP
Sbjct: 659 ISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKP 718

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
           ++ +W ALL +CR+H +VE+A IA+ E+FKL+ ++  G YV +SN  A AG+WD V+++R
Sbjct: 719 DAGIWGALLHACRVHRNVELAEIASQELFKLDPHN-CGYYVLMSNINAVAGRWDGVSKMR 777

Query: 477 EKMKLRGVLKDTGCSWV 493
             MK + V K  G SWV
Sbjct: 778 RLMKDKKVQKIPGYSWV 794



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/330 (27%), Positives = 157/330 (47%), Gaps = 20/330 (6%)

Query: 64  GLKIHAHITKTGVKPNTN-----ISIKLLILHLKCGALKYAGQMFDELPQRTLSA---YN 115
           GL+IHA    +G+          +  +L+ +++     + A  +F  LP+   +A   +N
Sbjct: 55  GLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVLARRFRDAVAVFSSLPRAAAAAALPWN 114

Query: 116 YMIAGYLKNGQVEESLSLVRKLVS--SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMV 173
           ++I G+   G    ++    K+ +  S  RPDG+T   ++K+   C +   L  +LGR+V
Sbjct: 115 WLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKS---CAALGAL--HLGRLV 169

Query: 174 HAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFV 233
           H       +  D  + +AL+  Y   G    AR VFD M E++ +    M+ G++  G V
Sbjct: 170 HRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDV 229

Query: 234 EDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVFFEDVKLGSA 289
             A  +FR           A +  + +S+  A   L    ++H   +K     +V + + 
Sbjct: 230 ASAVGLFRVMRASGCDPNFATLACF-LSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANT 288

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349
           LV MYAKC  +++A R+F  M + ++ TW  MI G  +NG  + AL LFC MQ+  +QP+
Sbjct: 289 LVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPD 348

Query: 350 YVTFLGALSACGHAGLVDKGREIFESMERD 379
            VT    L A        +G+EI   + R+
Sbjct: 349 SVTLASLLPALTELNGFKQGKEIHGYIVRN 378



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 91/369 (24%), Positives = 174/369 (47%), Gaps = 14/369 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H      G+  +  +   L+ ++   G L  A ++FD + +R    +N M+ GY+K
Sbjct: 166 GRLVHRTTRALGLDRDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVK 225

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G V  ++ L R + +SG  P+  T +  L   + C +   L    G  +H   +K  ++
Sbjct: 226 AGDVASAVGLFRVMRASGCDPNFATLACFL---SVCAAEADLLS--GVQLHTLAVKYGLE 280

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
            +  +   LV  Y K      A  +F +M   +++    MISG +  G V+DA  +F   
Sbjct: 281 PEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDM 340

Query: 241 -RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            +  ++ D V   +++   +  +   ++  E+H  +++N    DV L SALVD+Y KC  
Sbjct: 341 QKSGLQPDSVTLASLLPALT-ELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRD 399

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +  A+ VFD  +  +V   ++MI GY  N     A+++F  +    ++PN V     L A
Sbjct: 400 VRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPA 459

Query: 360 CGHAGLVDKGREIFESMERD-YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           C     +  G+E+   + ++ Y  +  +E  + ++D+  + G L+ +     +M  K + 
Sbjct: 460 CASMAAMRIGQELHGYVLKNAYEGRCYVE--SALMDMYSKCGRLDLSHYMFSKMSAK-DE 516

Query: 419 DVWAALLSS 427
             W +++SS
Sbjct: 517 VTWNSMISS 525



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 88/185 (47%), Gaps = 9/185 (4%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           +YG +IH  I K  ++ +      L+ ++ KCG L+ A ++F+ +P++   ++N +I+ Y
Sbjct: 568 YYGKEIHGIIIKGPIRADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWNSIISAY 627

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
             +G V+ES+ L+  +   G + D  TF  ++ A   C     +   L R+      +  
Sbjct: 628 GAHGLVKESVDLLCCMQEEGFKADHVTFLALISA---CAHAGQVQEGL-RLFRCMTEEYH 683

Query: 182 VKADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAE--- 237
           ++      + +VD Y + GK   A + + DM  + +     +++        VE AE   
Sbjct: 684 IEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPFKPDAGIWGALLHACRVHRNVELAEIAS 743

Query: 238 -EIFR 241
            E+F+
Sbjct: 744 QELFK 748


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 151/441 (34%), Positives = 252/441 (57%), Gaps = 8/441 (1%)

Query: 56  INSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYN 115
           I  D    G +IH+ + KT    N  +S  LL  + K  ++  A ++FDE+P++   +YN
Sbjct: 221 IGLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYN 280

Query: 116 YMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA 175
            +I+GY  +G+ + +  L R+L  +      + F+ +L  +    SN  L   +GR +HA
Sbjct: 281 VIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIA----SNT-LDWEMGRQIHA 335

Query: 176 QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
           Q +     ++ ++  +LVD Y K GK   A ++F  +  ++ +  T+MIS ++ +GF E+
Sbjct: 336 QTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEE 395

Query: 236 AEEIFRKTVEKDIVVYNAMIEGY---SISIETARKALEVHCQLIKNVFFEDVKLGSALVD 292
             ++F K  +  ++   A        S SI +     ++H  +IK+ F  +V  GSAL+D
Sbjct: 396 GLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLD 455

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           +YAKCG I DA + F  M  +N+ +W +MI  Y +NG     L+ F  M    +QP+ V+
Sbjct: 456 VYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVS 515

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
           FLG LSAC H+GLV++G   F SM + Y + P+ EHYA +VD+L R+G   +A K + EM
Sbjct: 516 FLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEM 575

Query: 413 PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSV 472
           P  P+  +W+++L++CR+H + E+A  AA+++F +        YV +SN  AAAG+W++V
Sbjct: 576 PIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQWENV 635

Query: 473 TELREKMKLRGVLKDTGCSWV 493
           +++ + M+ RGV K    SWV
Sbjct: 636 SKVHKAMRDRGVKKLPAYSWV 656



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 123/498 (24%), Positives = 203/498 (40%), Gaps = 116/498 (23%)

Query: 30  PPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLIL 89
           P  LQN  SL++ L +   P    + +N+        I A I KTG  P+T+ S   +  
Sbjct: 6   PNALQNLTSLTS-LASLQSPKLRLNVVNN--------IDARIVKTGFDPDTSRSNFRVGN 56

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG------------------------ 125
            LK G L  A Q+F+++P +   + N MI+GY+K+G                        
Sbjct: 57  FLKNGELSQARQLFEKMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILI 116

Query: 126 -------QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
                  Q +E+  L  ++   G  PD  TF  +L  S C   N     N    V  QI+
Sbjct: 117 GGYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLL--SGC---NGHEMGNQITQVQTQII 171

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE------------------------ 214
           K    +  ++   LVDSY K  +   A  +F  M E                        
Sbjct: 172 KLGYDSRLIVGNTLVDSYCKSNRLDLACQLFKEMPEIDSFTFAAVLCANIGLDDIVLGQQ 231

Query: 215 -----------KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY----- 258
                       NV  S +++  +     V DA ++F +  E+D V YN +I GY     
Sbjct: 232 IHSFVIKTNFVWNVFVSNALLDFYSKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGK 291

Query: 259 ---------------------------SISIETARKAL--EVHCQLIKNVFFEDVKLGSA 289
                                      SI+  T    +  ++H Q I      ++ +G++
Sbjct: 292 HKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIHAQTIVTTADSEILVGNS 351

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349
           LVDMYAKCGK ++A  +F ++  ++   WT+MI  Y + G   + L+LF  M++  V  +
Sbjct: 352 LVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFYEEGLQLFNKMRQASVIAD 411

Query: 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFV 409
             TF   L A      +  G+++   + +   M       A ++D+  + GS++ A++  
Sbjct: 412 QATFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSA-LLDVYAKCGSIKDAVQTF 470

Query: 410 LEMPEKPNSDVWAALLSS 427
            EMP++ N   W A++S+
Sbjct: 471 QEMPDR-NIVSWNAMISA 487



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 98/228 (42%), Gaps = 44/228 (19%)

Query: 224 ISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFED 283
           +  F+  G +  A ++F K   K+ V  N MI GY                         
Sbjct: 54  VGNFLKNGELSQARQLFEKMPHKNTVSTNMMISGY------------------------- 88

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
                       K G + +AR++FD M ++   TWT +I GY +     +A ELF  MQ 
Sbjct: 89  -----------VKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFVQMQR 137

Query: 344 CCVQPNYVTFLGALSAC-GHAGLVDKGREIFESMERDYSM--KPKMEHYACMVDLLGRAG 400
           C  +P+YVTF+  LS C GH    + G +I +   +   +    ++     +VD   ++ 
Sbjct: 138 CGTEPDYVTFVTLLSGCNGH----EMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSN 193

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
            L+ A +   EMPE  +S  +AA+L +    DD+ +     + + K N
Sbjct: 194 RLDLACQLFKEMPE-IDSFTFAAVLCANIGLDDIVLGQQIHSFVIKTN 240


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  279 bits (713), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 162/487 (33%), Positives = 265/487 (54%), Gaps = 34/487 (6%)

Query: 18  RHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVK 77
           R   + P   TFP  +++  +L +              +NS     G + H      G +
Sbjct: 74  RKLDIKPNRSTFPCAIKSCSALFD--------------LNS-----GKQAHQQALVFGFE 114

Query: 78  PNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL 137
            +  +S  L+ ++ KCG L  A  +FDE+P+R +  +  +I GY++N    E+L + ++ 
Sbjct: 115 SDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEF 174

Query: 138 VSSGERPDGY-------TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT 190
           +      +G        + +MI   S C R +    + +   VH   +K  +     +  
Sbjct: 175 LFEKSEGNGEEVGTSVDSVAMISVLSACSRVS---NKAVSEGVHGVAIKVGLDKVMGVEN 231

Query: 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV 250
            L+D+Y K G+ S +R VFD M EK+V+   SMI+ +   G   DA E+F   ++     
Sbjct: 232 TLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGK 291

Query: 251 YNAMIEGYSISIETARKALEV----HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRV 306
           YN +     +       AL V    H Q+IK  +  +V + ++++DMY KCG+ + AR  
Sbjct: 292 YNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNA 351

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           FD M++KNV +WT+MI GYG +G   +AL++F  M    V+PNY+TF+  L+AC HAG +
Sbjct: 352 FDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFL 411

Query: 367 DKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           ++G   F +M  +Y+++P +EHY CMVDLLGRAG +++A   +  M  + +  +W +LL+
Sbjct: 412 EEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLA 471

Query: 427 SCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLK 486
           +CR+H DVE+A I+A E+FKL+ ++  G YV L+N  A AG+W  V  +R  +K RG++K
Sbjct: 472 ACRIHKDVELAEISARELFKLDPSN-CGYYVLLANIYADAGRWKDVERMRILVKDRGLVK 530

Query: 487 DTGCSWV 493
             G S V
Sbjct: 531 PPGYSLV 537



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 113/386 (29%), Positives = 183/386 (47%), Gaps = 47/386 (12%)

Query: 65  LKIHA-HITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRT-LSAYNYMIAGYL 122
            KIH  H + T    NTN++                  +F++   RT + ++N +IA   
Sbjct: 16  FKIHKNHFSTTAAATNTNLT-----------------TLFNKYFDRTDVYSWNSLIAELA 58

Query: 123 KNGQVEESL---SLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           + G   ESL   S +RKL     +P+  TF   +K+   C +   L  N G+  H Q L 
Sbjct: 59  RGGDSCESLRAFSWMRKL---DIKPNRSTFPCAIKS---CSALFDL--NSGKQAHQQALV 110

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
              ++D  + +AL+D Y K GK S AR++FD +  +N++  TS+I+G++      +A  +
Sbjct: 111 FGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMV 170

Query: 240 FRKTV-EKD---------IVVYNAMIEGYSISIETARKALE--VHCQLIKNVFFEDVKLG 287
           F++ + EK           V   AMI   S     + KA+   VH   IK    + + + 
Sbjct: 171 FKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVE 230

Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF-CMMQECCV 346
           + L+D YAKCG++  +R+VFD M +K+V +W SMI  Y +NG    A E+F  M++    
Sbjct: 231 NTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGG 290

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFES-MERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
           + N VT    L AC H G +  G  + +  ++  Y     M     ++D+  + G  E A
Sbjct: 291 KYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMA--TSIIDMYCKCGQAEMA 348

Query: 406 LKFVLEMPEKPNSDVWAALLSSCRLH 431
                 M EK N   W A+++   +H
Sbjct: 349 RNAFDGMKEK-NVRSWTAMIAGYGMH 373


>gi|22093801|dbj|BAC07088.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 643

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 157/478 (32%), Positives = 262/478 (54%), Gaps = 31/478 (6%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNT-------NISIKLLILH-------- 90
            SLP+AL+             +HA   ++G   +        N+ IKL   H        
Sbjct: 50  ASLPAALKSCAGLGLCTLAASLHALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGP 109

Query: 91  -----LKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
                L+  A +   ++FDE+ +R   ++N +I G  ++ + +E+LS+VR++   G  PD
Sbjct: 110 SGEGGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPD 169

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
            +T S +L     C     + R  G +VH   +K     D  + ++L+D Y    +  Y+
Sbjct: 170 TFTLSTVLPIFAEC---ADIKR--GMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYS 224

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSIS 261
             VFD   + + +   SM++G+   G VE+A  IFR+ ++  +    V ++++I  +  +
Sbjct: 225 MKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFG-N 283

Query: 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
           +   R   ++H  LI+  F +++ + S+L+DMY KCG +D ARRVF+ +Q  ++ +WT+M
Sbjct: 284 LSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAM 343

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           I GY  +G   +A  LF  M+   V+PN++TFL  L+AC HAGLVD G + F SM   Y 
Sbjct: 344 IMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYG 403

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441
             P +EH A + D LGRAG L++A  F+ EM  KP S VW+ LL +CR+H +  +A   A
Sbjct: 404 FVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVA 463

Query: 442 NEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
            +IF+L      G++V LSN  +A+G+W+   +LR+ M+++G+ K+  CSW+  ++ L
Sbjct: 464 KKIFELEPKSM-GSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKL 520


>gi|224138230|ref|XP_002322762.1| predicted protein [Populus trichocarpa]
 gi|222867392|gb|EEF04523.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 164/470 (34%), Positives = 251/470 (53%), Gaps = 41/470 (8%)

Query: 55  YINSDTPFYGLKI-HAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSA 113
           ++ S T    LKI HAH+ +     +   +  L+ + +    L YA Q+F ++    L  
Sbjct: 21  FLESCTTLSHLKIIHAHLIRAHTIFDVFAASCLISISINKNLLDYAAQVFYQIQNPNLFI 80

Query: 114 YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMV 173
           YN  I G+  +   ++S     +   +G  PD  T+  ++KA T   S      ++G   
Sbjct: 81  YNSFIRGFSGSKDPDKSFHFYVQSKRNGLVPDNLTYPFLVKACTQKGS-----LDMGIQA 135

Query: 174 HAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFV 233
           H QI++    +D  +  +LV  Y   G    A  VF  +   +V+  TSM++G++  G V
Sbjct: 136 HGQIIRHGFDSDVYVQNSLVTMYSTLGDIKSASYVFRRISCLDVVSWTSMVAGYIKSGDV 195

Query: 234 EDAEEIFRKTVEKDIVVYNAMIEGYS------------------------------ISIE 263
             A ++F K  EK++V ++ MI GY+                              I+  
Sbjct: 196 TSARKLFDKMPEKNLVTWSVMISGYAKNSFFDKAIELYFLLQSEGVHANETVMVSVIASC 255

Query: 264 TARKALEV----HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWT 319
               ALE+    H  +++N    ++ LG+ALVDMYA+CG ID A  VFD +  ++  +WT
Sbjct: 256 AHLGALELGERAHDYILRNKMTVNLILGTALVDMYARCGSIDKAIWVFDQLPGRDALSWT 315

Query: 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD 379
           ++I G+  +G   +ALE F  M++  + P  +TF   LSAC H GLV++G E+FESM+RD
Sbjct: 316 TLIAGFAMHGYAEKALEYFSRMEKAGLTPREITFTAVLSACSHGGLVERGLELFESMKRD 375

Query: 380 YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANI 439
           Y ++P++EHY CMVDLLGRAG L +A KFV EMP KPN+ +W ALL +CR+H + E+A  
Sbjct: 376 YRIEPRLEHYGCMVDLLGRAGKLAEAEKFVNEMPMKPNAPIWGALLGACRIHKNSEIAER 435

Query: 440 AANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTG 489
           A   + +L   +  G YV LSN  A   KW++V  +R+ MK RGV+K  G
Sbjct: 436 AGKTLIELKP-EHSGYYVLLSNIYARTNKWENVENIRQMMKERGVVKPPG 484


>gi|224091072|ref|XP_002309169.1| predicted protein [Populus trichocarpa]
 gi|222855145|gb|EEE92692.1| predicted protein [Populus trichocarpa]
          Length = 619

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 160/469 (34%), Positives = 255/469 (54%), Gaps = 49/469 (10%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +HA + + G+  ++ +  K+L      G   Y+ ++F +  +  +  +N MI G + N  
Sbjct: 29  VHAALLRLGLDEDSYLLNKVLRFSFNFGNTNYSHRIFHQTKEPNIFLFNTMIHGLVLNDS 88

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
            +ES+ +   +   G  PD +TF  +LKA  C R    L   LG  +H  ++K   ++D 
Sbjct: 89  FQESIEIYHSMRKEGLSPDSFTFPFLLKA--CAR---LLDSKLGIKLHGLVVKAGCESDA 143

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT--- 243
            + T+LV  Y K G    A  VFD + EKNV   T++ISG++  G   +A ++FR+    
Sbjct: 144 FVNTSLVSLYGKCGFIDNAFKVFDDIPEKNVAAWTAIISGYIGVGKCREAIDMFRRACSV 203

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLI----------------------- 276
               +EKDIV +++MI+GY+ S    ++AL++  +++                       
Sbjct: 204 FDGMLEKDIVSWSSMIQGYA-SNGLPKEALDLFFKMLNEGFRPDCYAMVGVLCACARLGA 262

Query: 277 ------------KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
                       +N F  +  LG+AL+DMYAKCG++D A  VF  M++K++  W + I G
Sbjct: 263 LELGNWASNLMDRNEFLGNPVLGTALIDMYAKCGRMDSAWEVFRGMRKKDIVVWNAAISG 322

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP 384
              +G+   A  LF  M++  ++P+  TF+G L AC HAGLVD+GR+ F SMER +++ P
Sbjct: 323 LAMSGHVKAAFGLFGQMEKSGIEPDGNTFVGLLCACTHAGLVDEGRQYFNSMERVFTLTP 382

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
           ++EHY CMVDLLGRAG L++A + V  MP + N+ VW ALL  CRLH D ++      ++
Sbjct: 383 EIEHYGCMVDLLGRAGFLDEAHQLVKSMPMEANAIVWGALLGGCRLHRDTQLVEGVLKQL 442

Query: 445 FKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             L  ++  G YV LSN  +A+ KW+   ++R  M  RG+ K  G SW+
Sbjct: 443 IALEPSN-SGNYVLLSNIYSASHKWEDAAKIRSIMSERGIKKVPGYSWI 490


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  278 bits (712), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 163/453 (35%), Positives = 254/453 (56%), Gaps = 15/453 (3%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           A+ LPS  +    S +   G +IH +I + G+  +  +   L+ ++ KC  +  A ++F 
Sbjct: 178 ASFLPSVTE----SASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFK 233

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP 164
           +     +     +I+GY+ NG   ++L + R L+     P+  T + +L A   C     
Sbjct: 234 QSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPA---CAGLAT 290

Query: 165 LPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
           L  NLG+ +HA ILK  +     + +A++D Y K G+   A  +F  M EK+ +C  ++I
Sbjct: 291 L--NLGKELHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAII 348

Query: 225 SGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVF 280
           +     G  ++A ++FR+ + ++ + Y+ +    ++S      AL     +H  +IK  F
Sbjct: 349 TNCSQNGKPQEAIDLFRQ-MGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAF 407

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             +V   SAL+DMY KCG +  AR VFD M++KN  +W S+I  YG +G+   +L LF  
Sbjct: 408 DSEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHK 467

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           M E  +QP++VTFL  LSACGHAG VDKG + F  M  +Y +  +MEHYAC+VDL GRAG
Sbjct: 468 MLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAG 527

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
            L +A + +  MP  P+  VW  LL +CR+H +VE+A +A+  +  L+  +  G YV LS
Sbjct: 528 RLNEAFETIKNMPFSPDDGVWGTLLGACRVHGNVELAEVASRCLLDLDP-ENSGCYVLLS 586

Query: 461 NTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           N  A AG+W SV ++R  MK RGV K  G SW+
Sbjct: 587 NVHADAGQWGSVRKIRSLMKKRGVQKVPGYSWI 619



 Score =  166 bits (421), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 104/378 (27%), Positives = 199/378 (52%), Gaps = 10/378 (2%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G ++H  +   G   +  ++  L+ ++ K G L  A ++F+ +P   +  +N MIAG++
Sbjct: 91  FGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFV 150

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +NG ++E+  L  +++S+G  PD  TF+  L + T    +  L +  G+ +H  IL+  +
Sbjct: 151 QNGFMDEASLLFSEMISAGVSPDSITFASFLPSVT---ESASLKQ--GKEIHGYILRHGI 205

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             D  L +AL+D Y K      A  +F      +++  T++ISG++  G   DA EIFR 
Sbjct: 206 ALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRW 265

Query: 243 TVEKDI---VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            +E+ +    V  A +      + T     E+H  ++K+   E   +GSA++DMYAKCG+
Sbjct: 266 LLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGR 325

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +D A ++F  M +K+   W ++I    +NG P +A++LF  M    +  + V+   ALSA
Sbjct: 326 LDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSA 385

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C +   +  G+ I   M +  +   ++   + ++D+ G+ G+L  A + V +M  + N  
Sbjct: 386 CANLPALHHGKAIHSFMIKG-AFDSEVFAESALIDMYGKCGNLSVA-RCVFDMMREKNEV 443

Query: 420 VWAALLSSCRLHDDVEMA 437
            W +++++   H  +E++
Sbjct: 444 SWNSIIAAYGSHGHLEVS 461



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 184/358 (51%), Gaps = 12/358 (3%)

Query: 75  GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV 134
           G   +  +   L+ L+ + G ++ A ++FD++P +    +N M+ G++K G+   ++ + 
Sbjct: 2   GFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVF 61

Query: 135 RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVD 194
             + +   +P+  TF+ +L  S C    +      G  +H  ++ C    D ++  ALV 
Sbjct: 62  EDMRNCQTKPNSITFASVL--SICASEAL---SEFGNQLHGLVISCGFHFDPLVANALVA 116

Query: 195 SYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVV 250
            Y K G+ S A  +F+ M + NV+    MI+GF+  GF+++A  +F +     V  D + 
Sbjct: 117 MYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSIT 176

Query: 251 YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM 310
           + + +   + S  + ++  E+H  ++++    DV L SAL+D+Y KC  +  A ++F   
Sbjct: 177 FASFLPSVTES-ASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACKIFKQS 235

Query: 311 QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR 370
              ++   T++I GY  NG  N ALE+F  + E  + PN VT    L AC     ++ G+
Sbjct: 236 TNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGK 295

Query: 371 EIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
           E+  ++ + + +  +    + ++D+  + G L+ A +    MPEK ++  W A++++C
Sbjct: 296 ELHANILK-HGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEK-DAVCWNAIITNC 351


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 155/465 (33%), Positives = 269/465 (57%), Gaps = 24/465 (5%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGL--KIHAHITKTGVKPNTNISIKLLILHLKCGALKY 98
           +  T TSL SA       +  F+ L  ++H+ + ++G+  +  +   L+ ++ K  A++ 
Sbjct: 247 DKFTLTSLLSAC-----VELEFFSLGKQLHSWVIRSGLASDVFVGCTLVDMYAKSAAVEN 301

Query: 99  AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
           + ++F+ +    + ++  +I+GY+++ Q +E++ L   ++     P+ +TFS +LKA   
Sbjct: 302 SRKIFNTMLHHNVMSWTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKA--- 358

Query: 159 CRSNVPLPR-NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
           C S   LP   +G+ +H Q +K  +   + +  +L++ Y + G    AR  F+++ EKN+
Sbjct: 359 CAS---LPDFGIGKQLHGQTIKLGLSTINCVGNSLINMYARSGTMECARKAFNILFEKNL 415

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKTVEKDIV-----VYNAMIEGYSISIETARKALEVH 272
           I   S  +   +     D++E F   VE   V      Y  ++ G +  I T  K  ++H
Sbjct: 416 I---SYNTAADANAKALDSDESFNHEVEHTGVGASPFTYACLLSG-AACIGTIVKGEQIH 471

Query: 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPN 332
             ++K+ F  ++ + +AL+ MY+KCG  + A +VF+ M  +NV TWTS+I G+ K+G   
Sbjct: 472 ALIVKSGFGTNLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFAT 531

Query: 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACM 392
           +ALELF  M E  V+PN VT++  LSAC H GL+D+  + F SM  ++S+ P+MEHYACM
Sbjct: 532 KALELFYEMLEIGVKPNEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACM 591

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR 452
           VDLLGR+G L +A++F+  MP   ++ VW   L SCR+H + ++   AA +I +   +D 
Sbjct: 592 VDLLGRSGLLLEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHD- 650

Query: 453 PGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTES 497
           P  Y+ LSN  A+ G+WD V  LR+ MK + ++K+TG SW+  ++
Sbjct: 651 PATYILLSNLYASEGRWDDVAALRKSMKQKKLIKETGYSWIEVDN 695



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 84/308 (27%), Positives = 142/308 (46%), Gaps = 24/308 (7%)

Query: 134 VRKLVSSGERPDGYTFSMILKAS----TCCRSNVPLPRNLGRMVHAQILKCDVKADDVLY 189
           +RK +S   R D  T S ++K+S     C RS       LG+++H +++   +  D VL 
Sbjct: 24  LRKAIS---RLDLTTTSPLIKSSLLLKACIRSG---NLELGKLLHHKLIDSGLPLDSVLL 77

Query: 190 TALVDSYVKGGKTSYARIVFDMM--LEKNVICSTSMISGFMSQGFVEDAEEIF------- 240
            +L+  Y K G    A  +F  M   +++++  +++IS F +      A   F       
Sbjct: 78  NSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCS 137

Query: 241 RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFED-VKLGSALVDMYAKCG- 298
           R  +  +   + A++   S  +      L +   L+K  +F+  V +G AL+DM+ K G 
Sbjct: 138 RNIIYPNEYCFTALLRSCSNPLFFT-TGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGL 196

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            I  AR VFD MQ KN+ TWT MI  Y + G  + A++LFC +      P+  T    LS
Sbjct: 197 DIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLS 256

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC        G+++   + R   +   +     +VD+  ++ ++E + K    M    N 
Sbjct: 257 ACVELEFFSLGKQLHSWVIRS-GLASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHH-NV 314

Query: 419 DVWAALLS 426
             W AL+S
Sbjct: 315 MSWTALIS 322


>gi|297607519|ref|NP_001060096.2| Os07g0578800 [Oryza sativa Japonica Group]
 gi|255677918|dbj|BAF22010.2| Os07g0578800 [Oryza sativa Japonica Group]
          Length = 967

 Score =  278 bits (712), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 156/478 (32%), Positives = 263/478 (55%), Gaps = 31/478 (6%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNT-------NISIKLLILH-------- 90
            SLP+AL+             +HA   ++G   +        N+ IKL   H        
Sbjct: 367 ASLPAALKSCAGLGLCTLAASLHALAIRSGSFADRFTANALLNLCIKLPGFHHPFGTNGP 426

Query: 91  -----LKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
                L+  A +   ++FDE+ +R   ++N +I G  ++ + +E+LS+VR++   G  PD
Sbjct: 427 SGEGGLESAAYESMRKVFDEMLERDAVSWNTLILGCAEHKRHQEALSMVREMWRDGFMPD 486

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
            +T S +L     C +++      G +VH   +K     D  + ++L+D Y    +  Y+
Sbjct: 487 TFTLSTVLPIFAEC-ADI----KRGMVVHGYAIKNGFDNDVFVGSSLIDMYANCTQMDYS 541

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSIS 261
             VFD   + + +   SM++G+   G VE+A  IFR+ ++  +    V ++++I  +  +
Sbjct: 542 MKVFDSFSDCDAVLWNSMLAGYAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIPAFG-N 600

Query: 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
           +   R   ++H  LI+  F +++ + S+L+DMY KCG +D ARRVF+ +Q  ++ +WT+M
Sbjct: 601 LSLLRLGKQLHAYLIRARFNDNIFISSSLIDMYCKCGNVDIARRVFNGIQSPDIVSWTAM 660

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           I GY  +G   +A  LF  M+   V+PN++TFL  L+AC HAGLVD G + F SM   Y 
Sbjct: 661 IMGYALHGPTTEAFVLFERMELGNVKPNHITFLAVLTACSHAGLVDNGWKYFNSMSNQYG 720

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441
             P +EH A + D LGRAG L++A  F+ EM  KP S VW+ LL +CR+H +  +A   A
Sbjct: 721 FVPSLEHCAALADTLGRAGDLDEAYNFISEMKIKPTSSVWSTLLRACRVHKNTVLAEEVA 780

Query: 442 NEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
            +IF+L      G++V LSN  +A+G+W+   +LR+ M+++G+ K+  CSW+  ++ L
Sbjct: 781 KKIFELEPKSM-GSHVILSNMYSASGRWNEAAQLRKSMRIKGMKKEPACSWIEVKNKL 837


>gi|356557279|ref|XP_003546945.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 631

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 156/476 (32%), Positives = 268/476 (56%), Gaps = 16/476 (3%)

Query: 26  NQTFPPKL---QNYDSL-SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTN 81
           +Q+F  +L      DS  S+P       S L+  I++     G ++HA + + G+  N +
Sbjct: 35  HQSFATQLIPQHKVDSFPSSPSNHYYYASLLESCISAKALEPGKQLHARLCQLGIAYNLD 94

Query: 82  ISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG 141
           ++ KL+  +  C +L+ A  +FD++P+  L  +N +I  Y  NG  E ++SL  +++  G
Sbjct: 95  LATKLVNFYSVCNSLRNAHHLFDKIPKGNLFLWNVLIRAYAWNGPHETAISLYHQMLEYG 154

Query: 142 ERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK 201
            +PD +T   +LKA +   +        GR++H ++++   + D  +  ALVD Y K G 
Sbjct: 155 LKPDNFTLPFVLKACSALST-----IGEGRVIHERVIRSGWERDVFVGAALVDMYAKCGC 209

Query: 202 TSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNA---MIEGY 258
              AR VFD +++++ +   SM++ +   G  +++  +  +   K +    A    +   
Sbjct: 210 VVDARHVFDKIVDRDAVLWNSMLAAYAQNGHPDESLSLCCEMAAKGVRPTEATLVTVISS 269

Query: 259 SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTW 318
           S  I       E+H    ++ F  + K+ +AL+DMYAKCG +  A  +F+ +++K V +W
Sbjct: 270 SADIACLPHGREIHGFGWRHGFQYNDKVKTALIDMYAKCGSVKVACVLFERLREKRVVSW 329

Query: 319 TSMIDGYGKNGNPNQALELF-CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377
            ++I GY  +G   +AL+LF  MM+E   QP+++TF+GAL+AC    L+D+GR ++  M 
Sbjct: 330 NAIITGYAMHGLAVEALDLFERMMKE--AQPDHITFVGALAACSRGRLLDEGRALYNLMV 387

Query: 378 RDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           RD  + P +EHY CMVDLLG  G L++A   + +M   P+S VW ALL+SC+ H +VE+A
Sbjct: 388 RDCRINPTVEHYTCMVDLLGHCGQLDEAYDLIRQMDVMPDSGVWGALLNSCKTHGNVELA 447

Query: 438 NIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            +A  ++ +L  +D  G YV L+N  A +GKW+ V  LR+ M  +G+ K+  CSW+
Sbjct: 448 EVALEKLIELEPDD-SGNYVILANMYAQSGKWEGVARLRQLMIDKGIKKNIACSWI 502


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 152/443 (34%), Positives = 255/443 (57%), Gaps = 18/443 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H+ + ++G+  +  +   L+ ++ KCG ++ A ++FD + +  + ++  ++ GY++
Sbjct: 281 GKELHSWVIRSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVR 340

Query: 124 NG---QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR-NLGRMVHAQILK 179
            G   + E        L+  G  P+ +TFS +LKA   C S   LP  + G  VH Q +K
Sbjct: 341 GGGGYEREAMRMFSNMLLQGGVAPNCFTFSGVLKA---CAS---LPDFDFGEQVHGQTIK 394

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
             + A D +   LV  Y K G+   AR  FD++ EKN++ S +++     + F  ++E+ 
Sbjct: 395 LGLSAIDCVGNGLVSVYAKSGRMESARKCFDVLFEKNLV-SETVVDDTNVKDFNLNSEQD 453

Query: 240 FRKTVEK-----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
             + VE          Y +++ G +  I T  K  ++H  ++K  F  D+ + +AL+ MY
Sbjct: 454 LDREVEYVGSGVSSFTYASLLSG-AACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMY 512

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           +KCG  + A +VF+ M+  NV TWTS+I+G+ K+G  ++ALELF  M E  V+PN VT++
Sbjct: 513 SKCGNKEAALQVFNDMEDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYI 572

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             LSAC H GL+D+  + F SM  ++ + P+MEHYACMVDLLGR+G L +A++F+  MP 
Sbjct: 573 AVLSACSHVGLIDEAWKHFTSMRDNHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPF 632

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
             ++ VW   L SCR+H + ++   AA  I +   +D P  Y+ LSN  A  G+W+ V  
Sbjct: 633 DADALVWRTFLGSCRVHRNTKLGEHAAKMILEREPHD-PATYILLSNLYATEGRWEDVAA 691

Query: 475 LREKMKLRGVLKDTGCSWVGTES 497
           +R+ MK + + K+ G SW+  E+
Sbjct: 692 IRKNMKQKQITKEAGSSWIEVEN 714



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 198/430 (46%), Gaps = 24/430 (5%)

Query: 64  GLKIHAHITKTG-VKPNTNISIKLLILHLK---CGALKYAGQMFDELPQRTLSAYNYMIA 119
           GL +   + KTG    +  +  +L+ + +K      L+ A ++FD++ ++ +  +  MI 
Sbjct: 175 GLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVVTWTLMIT 234

Query: 120 GYLKNGQVEESLSL-VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
              + G  +E++ L +  LVSSG  PD +T + ++  S C         +LG+ +H+ ++
Sbjct: 235 RLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLI--SVCAEIQF---LSLGKELHSWVI 289

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM--SQGFVEDA 236
           +  +  D  +  +LVD Y K G    AR VFD M E NV+  T++++G++    G+  +A
Sbjct: 290 RSGLVLDLCVGCSLVDMYAKCGLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYEREA 349

Query: 237 EEIF-----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALV 291
             +F     +  V  +   ++ +++  + S+       +VH Q IK        +G+ LV
Sbjct: 350 MRMFSNMLLQGGVAPNCFTFSGVLKACA-SLPDFDFGEQVHGQTIKLGLSAIDCVGNGLV 408

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
            +YAK G+++ AR+ FD + +KN+ + T + D   K+ N N   +L   ++      +  
Sbjct: 409 SVYAKSGRMESARKCFDVLFEKNLVSETVVDDTNVKDFNLNSEQDLDREVEYVGSGVSSF 468

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
           T+   LS     G + KG +I  +M      +  +     ++ +  + G+ E AL+   +
Sbjct: 469 TYASLLSGAACIGTIGKGEQI-HAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFND 527

Query: 412 MPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG---- 467
           M E  N   W ++++    H     A      + +         Y+A+ +  +  G    
Sbjct: 528 M-EDCNVITWTSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDE 586

Query: 468 KWDSVTELRE 477
            W   T +R+
Sbjct: 587 AWKHFTSMRD 596



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 142/291 (48%), Gaps = 20/291 (6%)

Query: 148 TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARI 207
           T S++LK   C R+      +LG+++H ++   ++  D +L  +L+  Y K      A  
Sbjct: 54  TSSLLLKQ--CIRTK---NTHLGKLLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFS 108

Query: 208 VFDMM--LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIV-----VYNAMIEGYSI 260
           +F  M   +++V+  +S+IS F +      A E+F + + +D V      + A+I    +
Sbjct: 109 IFQSMENSKRDVVSYSSIISCFANNRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRA-CL 167

Query: 261 SIETARKALEVHCQLIKNVFFED-VKLGSALVDMYAK---CGKIDDARRVFDHMQQKNVF 316
                +  L +   ++K  +F+  V +G  L+DM+ K      ++ AR+VFD M++KNV 
Sbjct: 168 KGGFFKTGLCLFGFVLKTGYFDSHVCVGCELIDMFVKGCSLADLESARKVFDKMREKNVV 227

Query: 317 TWTSMIDGYGKNGNPNQALELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES 375
           TWT MI    + G  ++A++LF  M+      P+  T  G +S C     +  G+E+   
Sbjct: 228 TWTLMITRLAQYGYNDEAIDLFLEMLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSW 287

Query: 376 MERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           + R   +   +     +VD+  + G +++A K V +   + N   W AL++
Sbjct: 288 VIRS-GLVLDLCVGCSLVDMYAKCGLVQEARK-VFDGMREHNVMSWTALVN 336


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  278 bits (711), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 157/437 (35%), Positives = 254/437 (58%), Gaps = 18/437 (4%)

Query: 63  YGLK--IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120
           +GL   IH  I K G   +  +   L+ L+ KCG +  A  +FD L  RT+ ++  +I+G
Sbjct: 170 FGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISG 229

Query: 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
           Y +NG+  E+L +  ++ ++G +PD      IL+A T            GR +H  ++K 
Sbjct: 230 YAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDD-----LEQGRSIHGFVIKM 284

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
            ++ +  L  +L   Y K G  + A+  FD M   NVI   +MISG+   G  E+A  +F
Sbjct: 285 GLEDEPALLISLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLF 344

Query: 241 RKTVEKDI-----VVYNAMIEGYSI-SIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
              + ++I      V +A++    + S+E A+   +    + K+ +  D+ + ++L+DMY
Sbjct: 345 HYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDD---YVSKSNYGSDIFVNTSLIDMY 401

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           AKCG ++ ARRVFD    K+V  W++MI GYG +G   +A+ L+ +M++  V PN VTF+
Sbjct: 402 AKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFI 461

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
           G L+AC H+GLV +G E+F  M +D+ + P+ EHY+C+VDLLGRAG L +A  F++++P 
Sbjct: 462 GLLTACNHSGLVKEGWELFHCM-KDFEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPI 520

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
           +P   VW ALLS+C+++  V +   AAN++F L+  +  G YV LSN  A++  WD V  
Sbjct: 521 EPGVSVWGALLSACKIYRCVTLGEYAANKLFSLDPYN-TGHYVQLSNLYASSCLWDCVAH 579

Query: 475 LREKMKLRGVLKDTGCS 491
           +R  M+ +G+ KD G S
Sbjct: 580 VRVLMREKGLNKDLGYS 596



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 116/437 (26%), Positives = 202/437 (46%), Gaps = 32/437 (7%)

Query: 14  STHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGL-------- 65
           +T N+  T     + F  K   Y   S+ L      +   H  NSD+ +  L        
Sbjct: 12  ATKNQKVTTPQIPRCFVLKFVKYLCFSSALHPEHFVNH-DHCFNSDSFYASLIDNSTHKR 70

Query: 66  ---KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
              +IH  +  +G++ N  +  KL+      G + YA ++FDE     +  +N +I  Y 
Sbjct: 71  HLDQIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYS 130

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +N    +++ + R +  +G  PDG+TF  +LKA T       L   L  ++H QI+K   
Sbjct: 131 RNNMYRDTVEMYRWMRWTGVHPDGFTFPYVLKACT-----ELLDFGLSCIIHGQIIKYGF 185

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            +D  +   LV  Y K G    A++VFD +  + ++  TS+ISG+   G   +A  +F +
Sbjct: 186 GSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQ 245

Query: 243 T----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
                V+ D +   +++  Y+  ++   +   +H  +IK    ++  L  +L   YAKCG
Sbjct: 246 MRNNGVKPDWIALVSILRAYT-DVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCG 304

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            +  A+  FD M+  NV  W +MI GY KNG+  +A+ LF  M    ++P+ VT   A+ 
Sbjct: 305 LVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRSAVL 364

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEH----YACMVDLLGRAGSLEQALKFVLEMPE 414
           A    G +    E+ + M+ DY  K            ++D+  + GS+E A + V +   
Sbjct: 365 ASAQVGSL----ELAQWMD-DYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARR-VFDRNS 418

Query: 415 KPNSDVWAALLSSCRLH 431
             +  +W+A++    LH
Sbjct: 419 DKDVVMWSAMIMGYGLH 435



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 15/190 (7%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +L S L+ Y + D    G  IH  + K G++    + I L   + KCG +  A   FD++
Sbjct: 257 ALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLISLTAFYAKCGLVTVAKSFFDQM 316

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
               +  +N MI+GY KNG  EE+++L   ++S   +PD          S   RS V   
Sbjct: 317 KTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPD----------SVTVRSAVLAS 366

Query: 167 RNLGRMVHAQIL-----KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
             +G +  AQ +     K +  +D  + T+L+D Y K G   +AR VFD   +K+V+  +
Sbjct: 367 AQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVMWS 426

Query: 222 SMISGFMSQG 231
           +MI G+   G
Sbjct: 427 AMIMGYGLHG 436


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  278 bits (711), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 156/476 (32%), Positives = 272/476 (57%), Gaps = 16/476 (3%)

Query: 26  NQTFPPKLQNYDSLS----NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTN 81
           N  F   LQ +  +     NP    +    L+  I  +    G  +H  + KT  + +  
Sbjct: 120 NDRFQDSLQLFAEMRMVGFNP-NHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLY 178

Query: 82  ISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG 141
           + + LL L+ K G      ++F+E+P+  +  +++MI+ Y ++ Q  E++ L  ++  + 
Sbjct: 179 VGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAF 238

Query: 142 ERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK 201
             P+ +TF+ +L++   C S   L   LG+ VH  +LK  +  +  +  AL+D Y K G+
Sbjct: 239 VLPNQFTFASVLQS---CASIENL--QLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGR 293

Query: 202 TSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEG 257
              +  +F  +  +N +   +MI G++  G  + A  +++  +E  +    V Y++++  
Sbjct: 294 LDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRA 353

Query: 258 YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT 317
            + S+       ++H   +K ++ +DV +G+AL+DMYAKCG I +AR VFD + +++  +
Sbjct: 354 CA-SLAAMELGTQIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEIS 412

Query: 318 WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377
           W +MI GY  +G   +AL+ F MMQE    PN +TF+  LSAC +AGL+D G+  F+SM 
Sbjct: 413 WNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMV 472

Query: 378 RDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           +DY ++P MEHY CMV LLGR+G L++A+K + E+P +PN  VW ALL +C +H+DV++ 
Sbjct: 473 QDYGIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLG 532

Query: 438 NIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            ++A +I +++  D    +V LSN  A   +W+SV  +R+ MK +GV K+ G SW+
Sbjct: 533 IMSAQQILQIDPQDE-ATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWI 587



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/396 (27%), Positives = 206/396 (52%), Gaps = 17/396 (4%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           NP   T++   L+  ++ +       +HA I K G + N  +   L+  +  CG++  A 
Sbjct: 40  NPFVFTTI---LKLLVSVECAELAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSAR 96

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           Q FD +  + + ++  M+A Y +N + ++SL L  ++   G  P+ +TF+ +LKA     
Sbjct: 97  QAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLE 156

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           +      ++G+ VH  +LK   + D  +   L+D Y K G  +    VF+ M + +VI  
Sbjct: 157 A-----FSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPW 211

Query: 221 TSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLI 276
           + MIS +       +A E+F    R  V  +   + ++++  + SIE  +   +VHC ++
Sbjct: 212 SFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCA-SIENLQLGKQVHCHVL 270

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           K     +V + +AL+D+YAKCG++D++ ++F  +  +N  TW +MI GY ++G+ ++AL 
Sbjct: 271 KVGLDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALS 330

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE-SMERDYSMKPKMEHYACMVDL 395
           L+  M EC VQ + VT+   L AC     ++ G +I   S++  Y     + +   ++D+
Sbjct: 331 LYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKTIYDKDVVVGN--ALIDM 388

Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
             + GS++ A + V +M  + +   W A++S   +H
Sbjct: 389 YAKCGSIKNA-RLVFDMLSERDEISWNAMISGYSMH 423



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/328 (25%), Positives = 158/328 (48%), Gaps = 20/328 (6%)

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK--ASTCCRSNV 163
           +P R   ++  +I GY+++ Q++E + L  ++   G   + + F+ ILK   S  C    
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAE-- 58

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
                L   +HA I K   +++  + TAL+D+Y   G  + AR  FD +  K+++  T M
Sbjct: 59  -----LAYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGM 113

Query: 224 ISGFMSQGFVEDAEEIFRKTVEKDIVVYN------AMIEGYSISIETARKALEVHCQLIK 277
           ++ +      +D+ ++F    E  +V +N      A +    I +E       VH  ++K
Sbjct: 114 VACYAENDRFQDSLQLF---AEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLK 170

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
             +  D+ +G  L+D+Y K G  +D  RVF+ M + +V  W+ MI  Y ++    +A+EL
Sbjct: 171 TCYEMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVEL 230

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
           F  M+   V PN  TF   L +C     +  G+++   + +   +   +     ++D+  
Sbjct: 231 FGQMRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLK-VGLDGNVFVSNALMDVYA 289

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALL 425
           + G L+ ++K  +E+P + N   W  ++
Sbjct: 290 KCGRLDNSMKLFMELPNR-NEVTWNTMI 316



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/303 (22%), Positives = 131/303 (43%), Gaps = 42/303 (13%)

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARK 267
           M ++N +   ++I G++    +++  ++F    R+  E +  V+  +++   +S+E A  
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILK-LLVSVECAEL 59

Query: 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
           A  +H  + K     +  +G+AL+D YA CG ++ AR+ FD +  K++ +WT M+  Y +
Sbjct: 60  AYSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAE 119

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD-YSMKPKM 386
           N     +L+LF  M+     PN+ TF G L AC        G+ +   + +  Y M   +
Sbjct: 120 NDRFQDSLQLFAEMRMVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYV 179

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPEK------------------------------- 415
                ++DL  + G     L+   EMP+                                
Sbjct: 180 G--VGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRA 237

Query: 416 ---PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSV 472
              PN   +A++L SC   +++++       + K+  +       AL +  A  G+ D+ 
Sbjct: 238 FVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGRLDNS 297

Query: 473 TEL 475
            +L
Sbjct: 298 MKL 300


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  278 bits (711), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 152/433 (35%), Positives = 251/433 (57%), Gaps = 13/433 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IH +  + G   +  ++   +  + KC +L  A ++F  +  +T+S++N +I  + +NG
Sbjct: 422 EIHGYAFRHGFLKDELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNG 481

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              +SL L   ++ SG  PD +T   +L A  C R  +   R  G+ +H  +L+  ++ D
Sbjct: 482 FPGKSLDLFLVMMDSGMDPDRFTIGSLLLA--CAR--LKFLR-CGKEIHGFMLRNGLELD 536

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
           + +  +L+  Y++       +++FD M  K+++C   MI+GF       +A + FR+ + 
Sbjct: 537 EFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLS 596

Query: 246 -----KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
                ++I V   +  G    +   R   EVH   +K    ED  +  AL+DMYAKCG +
Sbjct: 597 GGIKPQEIAVTGVL--GACSQVSALRLGKEVHSFALKAHLSEDAFVTCALIDMYAKCGCM 654

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           + ++ +FD + +K+   W  +I GYG +G+  +A+ELF +MQ    +P+  TFLG L AC
Sbjct: 655 EQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIAC 714

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            HAGLV +G +    M+  Y +KPK+EHYAC+VD+LGRAG L +ALK V EMP++P+S +
Sbjct: 715 NHAGLVTEGLKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGI 774

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W++LLSSCR + D+E+    + ++ +L  N +   YV LSN  A  GKWD V ++R++MK
Sbjct: 775 WSSLLSSCRNYGDLEIGEEVSKKLLELEPN-KAENYVLLSNLYAGLGKWDEVRKVRQRMK 833

Query: 481 LRGVLKDTGCSWV 493
             G+ KD GCSW+
Sbjct: 834 ENGLHKDAGCSWI 846



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 103/374 (27%), Positives = 178/374 (47%), Gaps = 18/374 (4%)

Query: 64  GLKIHAHITKT-GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G K+HA ++ +  ++ +  +S +++ ++  CG+   +  +FD   ++ L  YN +++GY 
Sbjct: 111 GRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYS 170

Query: 123 KNGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           +N    +++SL  +L+S+ +  PD +T   + KA   C     +   LG  VHA  LK  
Sbjct: 171 RNALFRDAISLFLELLSATDLAPDNFTLPCVAKA---CAGVADVE--LGEAVHALALKAG 225

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
             +D  +  AL+  Y K G    A  VF+ M  +N++   S++      G   +   +F+
Sbjct: 226 GFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFK 285

Query: 242 KTVEK-------DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
           + +         D+     +I   + ++   R  + VH    K    E+V + ++LVDMY
Sbjct: 286 RLLISEEEGLVPDVATMVTVIPACA-AVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMY 344

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ-ECCVQPNYVTF 353
           +KCG + +AR +FD    KNV +W ++I GY K G+     EL   MQ E  V+ N VT 
Sbjct: 345 SKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTV 404

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           L  L AC     +   +EI     R   +K ++   A  V    +  SL+ A +    M 
Sbjct: 405 LNVLPACSGEHQLLSLKEIHGYAFRHGFLKDELVANA-FVAAYAKCSSLDCAERVFCGME 463

Query: 414 EKPNSDVWAALLSS 427
            K  S  W AL+ +
Sbjct: 464 GKTVSS-WNALIGA 476



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 157/352 (44%), Gaps = 39/352 (11%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH  + + G++ +  I I L+ L+++C ++     +FD++  ++L  +N MI G+ +
Sbjct: 521 GKEIHGFMLRNGLELDEFIGISLMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQ 580

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N    E+L   R+++S G +P     + +L A     S V   R LG+ VH+  LK  + 
Sbjct: 581 NELPCEALDTFRQMLSGGIKPQEIAVTGVLGAC----SQVSALR-LGKEVHSFALKAHLS 635

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +  AL+D Y K G    ++ +FD + EK+      +I+G+   G    A E+F   
Sbjct: 636 EDAFVTCALIDMYAKCGCMEQSQNIFDRVNEKDEAVWNVIIAGYGIHGHGLKAIELFELM 695

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
             K     +    G  I+          H  L+     E +K    + ++Y    K++  
Sbjct: 696 QNKGGRPDSFTFLGVLIACN--------HAGLVT----EGLKYLGQMQNLYGVKPKLEH- 742

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
                         +  ++D  G+ G   +AL+L   M +   +P+   +   LS+C + 
Sbjct: 743 --------------YACVVDMLGRAGQLTEALKLVNEMPD---EPDSGIWSSLLSSCRNY 785

Query: 364 GLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
           G ++ G E+ + +     ++P K E+Y  + +L    G  ++  K    M E
Sbjct: 786 GDLEIGEEVSKKL---LELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKE 834


>gi|413918675|gb|AFW58607.1| hypothetical protein ZEAMMB73_481408 [Zea mays]
          Length = 694

 Score =  278 bits (711), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 159/436 (36%), Positives = 246/436 (56%), Gaps = 15/436 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  + A+  K G+  +  +   L+ ++  CG +  A  +FD   +  +  +N ++A YLK
Sbjct: 139 GRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEESGVVMWNAIVAAYLK 198

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG   E + + + ++  G   D  T   ++ A  C R        LG+ V   + +  + 
Sbjct: 199 NGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTA--CGRIG---DAKLGKWVAGHVDEEGLA 253

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +  L TAL+D Y K G+   AR +FD M  ++V+  ++MISG+       +A  +F + 
Sbjct: 254 RNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALGLFSEM 313

Query: 244 ----VEKDIVVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
               VE + V   +++   ++  ++ET +    VH  + +        LG+ALVD YAKC
Sbjct: 314 QLARVEPNDVTMVSVLSACAVLGALETGKW---VHSYVRRKRLSLTTILGTALVDFYAKC 370

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G IDDA   F+ M  KN +TWT++I G   NG   +ALELF  M+E  ++P  VTF+G L
Sbjct: 371 GCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIEPTDVTFIGVL 430

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            AC H+ LV++GR  F+SM RDY +KP++EHY CMVDLLGRAG +++A +F+  MP +PN
Sbjct: 431 MACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQFIRTMPIEPN 490

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
           + +W ALLSSC +H +V +   A  +I  LN +   G YV LSN  A+AG+W     +R+
Sbjct: 491 AVIWRALLSSCAVHRNVGIGEEALKQIISLNPS-HSGDYVLLSNIYASAGQWKDAAMVRK 549

Query: 478 KMKLRGVLKDTGCSWV 493
           +MK RG+ K  GCS +
Sbjct: 550 EMKDRGIEKTPGCSLI 565



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 112/393 (28%), Positives = 190/393 (48%), Gaps = 17/393 (4%)

Query: 42  PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGA--LKYA 99
           P    + P+  +  + +D P Y  ++HA + K+G    +  S   L+         L YA
Sbjct: 11  PTPGRAGPAPPRAPLRAD-PSYLPQLHAALIKSGELTGSAKSFHSLLEAAAASPTLLPYA 69

Query: 100 GQMFDELPQRTLSA--YNYMIAGYLKNGQVEESLSLVRKLV--SSGERPDGYTFSMILKA 155
             +F   P+  LS   YN ++  +L  G  E++L L  +++  +S    D +T +  LK 
Sbjct: 70  VSLFRLGPRPPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQHTAACALK- 128

Query: 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
            +C R       ++GR V A  +K  + AD  + ++L+  Y   G  + AR+VFD   E 
Sbjct: 129 -SCSRM---CALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDAAEES 184

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS---IETARKALEVH 272
            V+   ++++ ++  G   +  E+F+  +E  +      +     +   I  A+    V 
Sbjct: 185 GVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLGKWVA 244

Query: 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPN 332
             + +     + KL +AL+DMYAKCG+I  ARR+FD MQ ++V  W++MI GY +     
Sbjct: 245 GHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQADQCR 304

Query: 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACM 392
           +AL LF  MQ   V+PN VT +  LSAC   G ++ G+ +   + R       +   A +
Sbjct: 305 EALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILGTA-L 363

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
           VD   + G ++ A++    MP K NS  W AL+
Sbjct: 364 VDFYAKCGCIDDAVEAFESMPVK-NSWTWTALI 395


>gi|449462994|ref|XP_004149219.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
 gi|449500964|ref|XP_004161240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 624

 Score =  278 bits (711), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 159/469 (33%), Positives = 250/469 (53%), Gaps = 21/469 (4%)

Query: 40  SNPLTATSLPSALQHYINSDTP------------FYGLKIHAHITKTGVKPNTNISIKLL 87
           SN  T  S  S   H ++ DT             F   ++HA I   G   N  ++ KLL
Sbjct: 33  SNEPTPCSQESECSHVLHYDTKRFRSSLLSCRNLFQVRQVHAQIATNGAFRNLAVANKLL 92

Query: 88  ILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGY 147
            ++++ GAL+ A ++FD + +R   +++ ++ GY K G       + R+L+ SG   D Y
Sbjct: 93  YMYVERGALEDAQELFDGMSKRHPYSWSVIVGGYAKVGNFFSCFWMFRELLRSGAPLDDY 152

Query: 148 TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARI 207
           +  ++++A   CR    L    GR++H   LKC +     +   LVD Y +      A  
Sbjct: 153 SAPVVIRA---CRDLKDL--KCGRLIHCITLKCGLDYGHFVCATLVDMYARCKVVEDAHQ 207

Query: 208 VFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIV---VYNAMIEGYSISIET 264
           +F  M ++++   T MI      G   ++   F +   + IV   V    +      +  
Sbjct: 208 IFVKMWKRDLATWTVMIGALAESGVPVESLVFFDRMRNQGIVPDKVALVTVVYACAKLGA 267

Query: 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
             KA  +H  +    +  DV LG+A++DMYAKCG ++ AR +FD MQ +NV TW++MI  
Sbjct: 268 MNKAKAIHAYINGTGYSLDVILGTAMIDMYAKCGSVESARWIFDRMQVRNVITWSAMIAA 327

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP 384
           YG +G   +ALELF MM    + PN +TF+  L AC HAGL+++G+  F SM  +Y + P
Sbjct: 328 YGYHGQGEKALELFPMMLRSGILPNRITFVSLLYACSHAGLIEEGQRFFSSMWDEYGVTP 387

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
            ++HY CMVDLLGRAG L++AL+ +  MP + +  +W ALL +CR+H  +++A   A  +
Sbjct: 388 DVKHYTCMVDLLGRAGRLDEALEMIEGMPVEKDEVLWGALLGACRIHRHLDLAERVARSL 447

Query: 445 FKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            KL +  +PG YV LSN  A AGKW+ + + R+ M   G+ K  G +W+
Sbjct: 448 LKLQSQ-KPGHYVLLSNIYANAGKWEDMAKTRDLMTKGGLRKIPGRTWI 495


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  278 bits (711), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 150/435 (34%), Positives = 239/435 (54%), Gaps = 12/435 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H    K            LL ++ KCG L  A  +F E+  R++ +Y  MIAGY +
Sbjct: 315 GRAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAR 374

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G   E++ L  ++   G  PD YT + +L    CC  N  L    G+ VH  I + D+ 
Sbjct: 375 EGLAGEAVKLFEEMEEEGISPDVYTVTAVL---NCCARNRLLDE--GKRVHEWIKENDMG 429

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
            D  +  AL+D Y K G    A +VF  M  K++I   ++I G+    +  +A  +F   
Sbjct: 430 FDIFVSNALMDMYAKCGSMREAELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLL 489

Query: 241 --RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
              K    D      ++   + S+    K  E+H  +++N +F D  + ++LVDMYAKCG
Sbjct: 490 LVEKRFSPDERTVACVLPACA-SLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCG 548

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            +  AR +FD +  K++ +WT MI GYG +G   +A+ LF  M++  ++P+ ++F+  L 
Sbjct: 549 ALLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLY 608

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC H+GLVD+G   F  M  +  ++P +EHYAC+VD+L R G+L +A +F+  MP  P++
Sbjct: 609 ACSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDA 668

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            +W ALL  CR+H DV++A   A ++F+L   +  G YV ++N  A A KW+ V  LR++
Sbjct: 669 TIWGALLCGCRIHHDVKLAERVAEKVFELEPEN-TGYYVLMANIYAEAEKWEEVKRLRKR 727

Query: 479 MKLRGVLKDTGCSWV 493
           +  RG+ K+ GCSW+
Sbjct: 728 IGQRGLRKNPGCSWI 742



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 113/375 (30%), Positives = 192/375 (51%), Gaps = 15/375 (4%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +L S LQ   +S +   G ++   I   G   ++N+  KL +++  CG LK A ++FD++
Sbjct: 96  TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQV 155

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
                  +N ++    K+G    S+ L +K++SSG   D YTFS + K+ +  RS     
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRS----- 210

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
            N G  +H  ILK      + +  +LV  Y+K  +   AR VFD M E++VI   S+I+G
Sbjct: 211 VNGGEQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIING 270

Query: 227 FMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSIS--IETARKALEVHCQLIKNVF 280
           ++S G  E    +F +     +E D+    ++  G + S  I   R    VHC  +K  F
Sbjct: 271 YVSNGLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRA---VHCFGVKACF 327

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             + +  + L+DMY+KCG +D A+ VF  M  ++V ++TSMI GY + G   +A++LF  
Sbjct: 328 SREDRFCNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEE 387

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           M+E  + P+  T    L+ C    L+D+G+ + E ++ +  M   +     ++D+  + G
Sbjct: 388 MEEEGISPDVYTVTAVLNCCARNRLLDEGKRVHEWIKEN-DMGFDIFVSNALMDMYAKCG 446

Query: 401 SLEQALKFVLEMPEK 415
           S+ +A     EM  K
Sbjct: 447 SMREAELVFSEMRVK 461


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 155/434 (35%), Positives = 256/434 (58%), Gaps = 12/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IHA++ + G + + ++   L+  + KC  +K   ++FD++  + + ++  MI+GY++
Sbjct: 271 GKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQ 330

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N    E++ L  ++   G +PDG+  + +L   T C S   L +  GR VHA  +K +++
Sbjct: 331 NSFDWEAMKLFGEMNRLGWKPDGFACTSVL---TSCGSREALEQ--GRQVHAYTIKANLE 385

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
           +D+ +   L+D Y K      A+ VFD+M E+NVI   +MI G+ SQ  + +A E+F   
Sbjct: 386 SDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEM 445

Query: 241 RKTVEK-DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           R  ++K +   + A+I   S ++ + R   + H QL+K        + +ALVDMYAKCG 
Sbjct: 446 RVRLQKPNEFTFAALITAAS-NLASLRHGQQFHNQLVKMGLDFCPFVTNALVDMYAKCGS 504

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I++AR++F+    ++V  W SMI  + ++G   +AL +F  M +  +QPNYVTF+  LSA
Sbjct: 505 IEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSA 564

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C HAG V+ G   F SM   + +KP  EHYAC+V LLGR+G L +A +F+ +MP +P + 
Sbjct: 565 CSHAGRVEDGLNHFNSMP-GFGIKPGTEHYACVVSLLGRSGKLFEAKEFIEKMPIEPAAI 623

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW +LLS+CR+  +VE+   AA      +  D  G+Y+ LSN  A+ G W  V ++R++M
Sbjct: 624 VWRSLLSACRIAGNVELGKYAAEMAISTDPKD-SGSYILLSNIFASKGMWADVKKVRDRM 682

Query: 480 KLRGVLKDTGCSWV 493
               V+K+ G SW+
Sbjct: 683 DSSEVVKEPGRSWI 696



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 111/416 (26%), Positives = 199/416 (47%), Gaps = 26/416 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H  + ++G   +  +   L+  + K G ++ A  +FD+L ++T   +  +IAGY K
Sbjct: 170 GAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTK 229

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G+   SL L  ++  +   PD Y  S +L A +            G+ +HA +L+   +
Sbjct: 230 CGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEF-----LEGGKQIHAYVLRRGTE 284

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
            D  +   L+D Y K  +    R +FD M+ KN+I  T+MISG+M   F  +A ++F   
Sbjct: 285 MDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEM 344

Query: 241 -RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            R   + D     +++     S E   +  +VH   IK     D  + + L+DMYAK   
Sbjct: 345 NRLGWKPDGFACTSVLTSCG-SREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNL 403

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           + DA++VFD M ++NV ++ +MI+GY      ++ALELF  M+    +PN  TF   ++A
Sbjct: 404 LIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITA 463

Query: 360 CGHAGLVDKGREIFESMER-DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
             +   +  G++    + +      P + +   +VD+  + GS+E+A K         NS
Sbjct: 464 ASNLASLRHGQQFHNQLVKMGLDFCPFVTN--ALVDMYAKCGSIEEARKMF-------NS 514

Query: 419 DVWA------ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGK 468
            +W       +++S+   H + E A     E+ K         +VA+ +  + AG+
Sbjct: 515 SIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSACSHAGR 570



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 125/525 (23%), Positives = 236/525 (44%), Gaps = 73/525 (13%)

Query: 12  FSSTHNRHYTLVPPNQTFP---PKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIH 68
           FS++ +  + L  P    P   PK + + +L            LQ  I+ +   +   IH
Sbjct: 25  FSTSVSPQFLLQNPCLQIPNLRPKRREFANL------------LQLSISRNPIIHYKIIH 72

Query: 69  AHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVE 128
             I  +G++ +T ++  L+ +  K   +  A  +FD++P + L  ++ M++ Y + G  E
Sbjct: 73  GQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSE 132

Query: 129 ESLSLVRKLV-SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV 187
           E+L +   L   SGE P+ +  + +++A  C +  V      G  +H  +++     D  
Sbjct: 133 EALMVFVDLQRKSGEHPNEFVLASVIRA--CTQLGVV---EKGAQLHGFVVRSGFDQDVY 187

Query: 188 LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKD 247
           + T+L+D Y K G    AR+VFD + EK  +  T++I+G+   G    + E+F +  E +
Sbjct: 188 VGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETN 247

Query: 248 IV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
           +V    V ++++   S+ +E      ++H  +++     DV + + L+D Y KC ++   
Sbjct: 248 VVPDRYVVSSVLSACSM-LEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVKAG 306

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
           R++FD M  KN+ +WT+MI GY +N    +A++LF  M     +P+       L++CG  
Sbjct: 307 RKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSR 366

Query: 364 GLVDKGREIFESMERDYSMKPKME-----------------------------------H 388
             +++GR++       Y++K  +E                                    
Sbjct: 367 EALEQGRQV-----HAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVIS 421

Query: 389 YACMVDLLGRAGSLEQALKFVLEMP---EKPNSDVWAALLSSCRLHDDVEMANIAANEIF 445
           Y  M++       L +AL+   EM    +KPN   +AAL+++      +       N++ 
Sbjct: 422 YNAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLV 481

Query: 446 KLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGC 490
           K+  +  P    AL +  A  G   S+ E R KM    + +D  C
Sbjct: 482 KMGLDFCPFVTNALVDMYAKCG---SIEEAR-KMFNSSIWRDVVC 522



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/113 (27%), Positives = 63/113 (55%), Gaps = 9/113 (7%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           +TA S  ++L+H         G + H  + K G+     ++  L+ ++ KCG+++ A +M
Sbjct: 461 ITAASNLASLRH---------GQQFHNQLVKMGLDFCPFVTNALVDMYAKCGSIEEARKM 511

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           F+    R +  +N MI+ + ++G+ EE+L + R+++  G +P+  TF  +L A
Sbjct: 512 FNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFVAVLSA 564


>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
 gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
          Length = 526

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 147/433 (33%), Positives = 245/433 (56%), Gaps = 11/433 (2%)

Query: 71  ITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEES 130
           + + G +PN      LL   +K   +  A  MFD++ + +++ +N +++GY +  Q +++
Sbjct: 65  MQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDT 124

Query: 131 LSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT 190
           + L R++     +PD  T ++IL  S+C +  +    + GR VH+  ++  +  D  + +
Sbjct: 125 IELFRRMQHQNVQPDRTTLAVIL--SSCSKLGI---LDFGRQVHSASVRFLLHNDMFVAS 179

Query: 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIV- 249
            LVD Y K G+   AR +F+ M E++V+C  S+ISG       ++A + F++  E  I+ 
Sbjct: 180 GLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMP 239

Query: 250 ---VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRV 306
               Y +MI   S  + +     ++H Q++K+ + ++V +GSAL+DMYAKCG +DDAR  
Sbjct: 240 TESSYASMINSCS-RLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLF 298

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           FD M  KN+  W  MI GY +NG  ++A+ELF  M     +P+ VTF+  L+ C H+GLV
Sbjct: 299 FDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLV 358

Query: 367 DKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           DK    F SME  Y + P  EHY C++D LGRAG   +    + +MP K +  +W  LL+
Sbjct: 359 DKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLA 418

Query: 427 SCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLK 486
           +C +H + E+   AA  +F+++  + P  YV LSN  A+ G+    + +R  M  RGV+K
Sbjct: 419 ACVVHHNAELGKCAAEHLFRIDPKN-PSPYVLLSNIYASLGRHGDASAVRALMSNRGVVK 477

Query: 487 DTGCSWVGTESGL 499
             G SW+  + G+
Sbjct: 478 GRGYSWIDQKDGV 490



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 109/204 (53%), Gaps = 11/204 (5%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G ++H+   +  +  +  ++  L+ ++ KCG +  A  +F+++ +R +  +N +I+G  
Sbjct: 158 FGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLT 217

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR-SNVPLPRNLGRMVHAQILKCD 181
            +   +E+    +++  +G  P   +++ ++  ++C R S++P     GR +HAQ++K  
Sbjct: 218 IHSLNKEAFDFFKQMRENGIMPTESSYASMI--NSCSRLSSIP----HGRQIHAQVMKDG 271

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
              +  + +AL+D Y K G    AR+ FD M+ KN++    MI G+   G  + A E+F 
Sbjct: 272 YDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFE 331

Query: 242 K--TVEK--DIVVYNAMIEGYSIS 261
              T E+  D V + A++ G S S
Sbjct: 332 YMLTTEQKPDAVTFIAVLTGCSHS 355



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/152 (27%), Positives = 80/152 (52%), Gaps = 8/152 (5%)

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
           F  D  +G++L+DMY KC ++D+A +VF+ +    + +W  +I G+G+ G+  +A+E+  
Sbjct: 4   FGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLS 63

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
           +MQE   +PN VT+   L++C  A  V   R +F+ + R     P +  +  ++    + 
Sbjct: 64  LMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISR-----PSVTTWNTLLSGYCQE 118

Query: 400 GSLEQALKFVLEMPE---KPNSDVWAALLSSC 428
              +  ++    M     +P+    A +LSSC
Sbjct: 119 EQHQDTIELFRRMQHQNVQPDRTTLAVILSSC 150


>gi|326519098|dbj|BAJ96548.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 149/438 (34%), Positives = 251/438 (57%), Gaps = 12/438 (2%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           K+HAH+  +    +  +   L+ L+ KCG++  A ++FDE+ ++ + ++  +IAGY +N 
Sbjct: 72  KVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQND 131

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             EE++ L+  ++    +P+G+TF+ +LKA+     +      +GR +HA  +KCD   D
Sbjct: 132 MPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADS-----GIGRQIHALAVKCDWHED 186

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEIFR 241
             + +AL+D Y + G    A  VFD +  KN +   ++ISGF  +G  E A     E+ R
Sbjct: 187 VYVGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLR 246

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
              E     Y+++    +  +    +   VH  +IK+        G+ L+DMYAK G + 
Sbjct: 247 NGFEATHFTYSSVFSSIA-RLGALEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMI 305

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           DAR+VFD +  K++ TW +M+  + + G   +A+  F  M++  +  N VTFL  L+AC 
Sbjct: 306 DARKVFDRVDDKDLVTWNTMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACS 365

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
           H GLV +G+  FE M ++Y ++P+++H+  +V LLGRAG L  AL F+ +MP +P + VW
Sbjct: 366 HGGLVKEGKRYFEMM-KEYDLEPEIDHFVTVVALLGRAGLLNFALVFIFKMPIEPTAAVW 424

Query: 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
            ALL++CR+H + ++   AA+ +F+L+ +D  G  V L N  A+ G+WD+   +R  MK 
Sbjct: 425 GALLAACRMHKNAKVGQFAADHVFELDPDD-SGPPVLLYNIYASTGQWDAAARVRRIMKT 483

Query: 482 RGVLKDTGCSWVGTESGL 499
            GV K+  CSWV  E+ +
Sbjct: 484 TGVKKEPACSWVEMENSV 501



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 129/264 (48%), Gaps = 11/264 (4%)

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
            R VHA +       D  L  +L+  Y K G    AR VFD M  K+++  TS+I+G+  
Sbjct: 70  ARKVHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVFDEMRRKDMVSWTSLIAGYAQ 129

Query: 230 QGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
               E+A      + +   + +   + ++++      ++     ++H   +K  + EDV 
Sbjct: 130 NDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSG-IGRQIHALAVKCDWHEDVY 188

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           +GSAL+DMYA+CG +D A  VFD +  KN  +W ++I G+ + G+   AL  F  M    
Sbjct: 189 VGSALLDMYARCGMMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNG 248

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA--CMVDLLGRAGSLE 403
            +  + T+    S+    G +++G+ +   M +    + KM  +A   ++D+  ++GS+ 
Sbjct: 249 FEATHFTYSSVFSSIARLGALEQGKWVHAHMIKS---RQKMTAFAGNTLLDMYAKSGSMI 305

Query: 404 QALKFVLEMPEKPNSDVWAALLSS 427
            A K V +  +  +   W  +L++
Sbjct: 306 DARK-VFDRVDDKDLVTWNTMLTA 328



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 116/246 (47%), Gaps = 12/246 (4%)

Query: 250 VYNAMIEG--YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVF 307
           VY+  I     S ++E ARK   VH  L  + F  D  L ++L+ +Y KCG + +AR+VF
Sbjct: 53  VYHTFITACAQSKNLEDARK---VHAHLASSRFAGDAFLDNSLIHLYCKCGSVLEARKVF 109

Query: 308 DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367
           D M++K++ +WTS+I GY +N  P +A+ L   M +   +PN  TF   L A G      
Sbjct: 110 DEMRRKDMVSWTSLIAGYAQNDMPEEAIGLLPGMLKGRFKPNGFTFASLLKAAGAHADSG 169

Query: 368 KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
            GR+I  ++         +   + ++D+  R G ++ A   V +  +  N   W AL+S 
Sbjct: 170 IGRQI-HALAVKCDWHEDVYVGSALLDMYARCGMMDMATA-VFDKLDSKNGVSWNALISG 227

Query: 428 CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA-----AAGKWDSVTELREKMKLR 482
                D E A +   E+ +         Y ++ +++A       GKW     ++ + K+ 
Sbjct: 228 FARKGDGETALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHMIKSRQKMT 287

Query: 483 GVLKDT 488
               +T
Sbjct: 288 AFAGNT 293



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 8/208 (3%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           N  T  SL  A   + +S     G +IHA   K     +  +   LL ++ +CG +  A 
Sbjct: 151 NGFTFASLLKAAGAHADSGI---GRQIHALAVKCDWHEDVYVGSALLDMYARCGMMDMAT 207

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
            +FD+L  +   ++N +I+G+ + G  E +L    +++ +G     +T+S +   S+  R
Sbjct: 208 AVFDKLDSKNGVSWNALISGFARKGDGETALMTFAEMLRNGFEATHFTYSSVF--SSIAR 265

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
                    G+ VHA ++K   K        L+D Y K G    AR VFD + +K+++  
Sbjct: 266 LGA---LEQGKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTW 322

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDI 248
            +M++ F   G  ++A   F +  +  I
Sbjct: 323 NTMLTAFAQYGLGKEAVSHFEEMRKSGI 350



 Score = 42.4 bits (98), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 48/94 (51%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +HAH+ K+  K        LL ++ K G++  A ++FD +  + L  +N M+  + +
Sbjct: 272 GKWVHAHMIKSRQKMTAFAGNTLLDMYAKSGSMIDARKVFDRVDDKDLVTWNTMLTAFAQ 331

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
            G  +E++S   ++  SG   +  TF  IL A +
Sbjct: 332 YGLGKEAVSHFEEMRKSGIYLNQVTFLCILTACS 365


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  278 bits (710), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 152/434 (35%), Positives = 248/434 (57%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH +  + G     NI+  L+ ++ KCG+LK A  +FD + +R + ++N MI  Y++
Sbjct: 255 GKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQ 314

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N   +E++ + +K++  G +P   +   ++ A   C     L R  GR +H   ++ ++ 
Sbjct: 315 NENPKEAMVIFQKMLDEGVKPTDVS---VMGALHACADLGDLER--GRFIHKLSVELELD 369

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR-- 241
            +  +  +L+  Y K  +   A  +F  +  + ++   +MI GF   G   +A   F   
Sbjct: 370 RNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQM 429

Query: 242 --KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
             +TV+ D   Y ++I   +  +     A  +H  +++N   ++V + +ALVDMYAKCG 
Sbjct: 430 QARTVKPDTFTYVSVITAIA-ELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGA 488

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I  AR +FD M +++V TW +MIDGYG +G    ALELF  MQ+  ++PN VTFL  +SA
Sbjct: 489 IMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISA 548

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H+GLV+ G + F  M+ +YS++P M+HY  MVDLLGRAG L +A  F+++MP KP  +
Sbjct: 549 CSHSGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVN 608

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           V+ A+L +C++H +V  A   A  +F+LN  D  G +V L+N   AA  W+ V ++R  M
Sbjct: 609 VYGAMLGACQIHKNVNFAEKVAERLFELNPED-GGYHVLLANIYRAASMWEKVGQVRVSM 667

Query: 480 KLRGVLKDTGCSWV 493
             +G+ K  GCS V
Sbjct: 668 LRQGLRKTPGCSMV 681



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 123/464 (26%), Positives = 215/464 (46%), Gaps = 68/464 (14%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH  + K+G   +      L  ++ KC  +  A ++FD +P+R L ++N ++AGY +
Sbjct: 154 GKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQ 213

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG    +L +V  +     +P   T   +L A +  R    L R +G+ +H   ++    
Sbjct: 214 NGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALR----LIR-IGKEIHGYAMRAGFD 268

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +   + TALVD Y K G    AR++FD MLE+NV+   SMI  ++     ++A  IF+K 
Sbjct: 269 SLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKM 328

Query: 244 VEK-----DIVVYNAMIEGYSIS-IETAR--KALEVHCQLIKNVFFEDVKLGSALVDMYA 295
           +++     D+ V  A+     +  +E  R    L V  +L +N     V + ++L+ MY 
Sbjct: 329 LDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDRN-----VSVVNSLISMYC 383

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KC ++D A  +F  +Q + + +W +MI G+ +NG P +AL  F  MQ   V+P+  T++ 
Sbjct: 384 KCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVS 443

Query: 356 ALSACG------HA--------------------GLVDK---------GREIFESMERDY 380
            ++A        HA                     LVD           R IF+ M   +
Sbjct: 444 VITAIAELSITHHAKWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMIARLIFDMMSERH 503

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSCRLHDDVEMA 437
                +  +  M+D  G  G  + AL+   EM +   +PN   + +++S+C  H  +  A
Sbjct: 504 -----VTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACS-HSGLVEA 557

Query: 438 NIAANEIFKLNANDRPGA--YVALSNTLAAAGK----WDSVTEL 475
            +    + K N +  P    Y A+ + L  AG+    WD + ++
Sbjct: 558 GLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQM 601



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 88/306 (28%), Positives = 156/306 (50%), Gaps = 10/306 (3%)

Query: 71  ITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEES 130
           I K G+        KL+ L  + G++  A ++F+ + ++    Y  M+ G+ K   ++++
Sbjct: 60  IFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKA 119

Query: 131 LSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT 190
           L    ++      P  Y F+ +LK    C     L   +G+ +H  ++K     D    T
Sbjct: 120 LKFFVRMRDDEVEPVVYNFTYLLKV---CGDEAEL--RVGKEIHGLLVKSGFSLDLFAMT 174

Query: 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI-- 248
            L + Y K  +   AR VFD M E++++   ++++G+   G    A E+     E+++  
Sbjct: 175 GLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKP 234

Query: 249 --VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRV 306
             +   +++   S ++   R   E+H   ++  F   V + +ALVDMYAKCG +  AR +
Sbjct: 235 SFITIVSVLPAVS-ALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSLKTARLL 293

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           FD M ++NV +W SMID Y +N NP +A+ +F  M +  V+P  V+ +GAL AC   G +
Sbjct: 294 FDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDL 353

Query: 367 DKGREI 372
           ++GR I
Sbjct: 354 ERGRFI 359


>gi|222622248|gb|EEE56380.1| hypothetical protein OsJ_05522 [Oryza sativa Japonica Group]
          Length = 518

 Score =  278 bits (710), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 147/433 (33%), Positives = 245/433 (56%), Gaps = 11/433 (2%)

Query: 71  ITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEES 130
           + + G +PN      LL   +K   +  A  MFD++ + +++ +N +++GY +  Q +++
Sbjct: 49  MQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDT 108

Query: 131 LSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT 190
           + L R++     +PD  T ++IL  S+C +  +    + GR VH+  ++  +  D  + +
Sbjct: 109 IELFRRMQHQNVQPDRTTLAVIL--SSCSKLGI---LDFGRQVHSASVRFLLHNDMFVAS 163

Query: 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIV- 249
            LVD Y K G+   AR +F+ M E++V+C  S+ISG       ++A + F++  E  I+ 
Sbjct: 164 GLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMP 223

Query: 250 ---VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRV 306
               Y +MI   S  + +     ++H Q++K+ + ++V +GSAL+DMYAKCG +DDAR  
Sbjct: 224 TESSYASMINSCS-RLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLF 282

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           FD M  KN+  W  MI GY +NG  ++A+ELF  M     +P+ VTF+  L+ C H+GLV
Sbjct: 283 FDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLV 342

Query: 367 DKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           DK    F SME  Y + P  EHY C++D LGRAG   +    + +MP K +  +W  LL+
Sbjct: 343 DKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLA 402

Query: 427 SCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLK 486
           +C +H + E+   AA  +F+++  + P  YV LSN  A+ G+    + +R  M  RGV+K
Sbjct: 403 ACVVHHNAELGKCAAEHLFRIDPKN-PSPYVLLSNIYASLGRHGDASAVRALMSNRGVVK 461

Query: 487 DTGCSWVGTESGL 499
             G SW+  + G+
Sbjct: 462 GRGYSWIDQKDGV 474



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 109/204 (53%), Gaps = 11/204 (5%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G ++H+   +  +  +  ++  L+ ++ KCG +  A  +F+++ +R +  +N +I+G  
Sbjct: 142 FGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLT 201

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR-SNVPLPRNLGRMVHAQILKCD 181
            +   +E+    +++  +G  P   +++ ++  ++C R S++P     GR +HAQ++K  
Sbjct: 202 IHSLNKEAFDFFKQMRENGIMPTESSYASMI--NSCSRLSSIP----HGRQIHAQVMKDG 255

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
              +  + +AL+D Y K G    AR+ FD M+ KN++    MI G+   G  + A E+F 
Sbjct: 256 YDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFE 315

Query: 242 K--TVEK--DIVVYNAMIEGYSIS 261
              T E+  D V + A++ G S S
Sbjct: 316 YMLTTEQKPDAVTFIAVLTGCSHS 339



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/139 (26%), Positives = 71/139 (51%), Gaps = 8/139 (5%)

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           MY KC ++D+A +VF+ +    + +W  +I G+G+ G+  +A+E+  +MQE   +PN VT
Sbjct: 1   MYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVT 60

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
           +   L++C  A  V   R +F+ + R     P +  +  ++    +    +  ++    M
Sbjct: 61  YSNLLASCIKARDVHSARAMFDKISR-----PSVTTWNTLLSGYCQEEQHQDTIELFRRM 115

Query: 413 PE---KPNSDVWAALLSSC 428
                +P+    A +LSSC
Sbjct: 116 QHQNVQPDRTTLAVILSSC 134


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  278 bits (710), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 166/486 (34%), Positives = 270/486 (55%), Gaps = 45/486 (9%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           NP+T   + SA     + +    G K+ ++I++ G++ +T +   L+ +++KCG +  A 
Sbjct: 230 NPVTMVCVISACAKLKDLE---LGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAAR 286

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           Q+FDE   + L  YN +++ Y+ +    + L ++ +++  G RPD  T  M+   + C +
Sbjct: 287 QIFDECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVT--MLSTIAACAQ 344

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
                  ++G+  HA +L+  ++  D +  A++D Y+K GK   A  VF+ M  K V+  
Sbjct: 345 LG---DLSVGKSSHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTW 401

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVH-------- 272
            S+I+G +  G +E A  IF + +E+D+V +N MI G  + +    +A+E+         
Sbjct: 402 NSLIAGLVRDGDMELAWRIFDEMLERDLVSWNTMI-GALVQVSMFEEAIELFREMQNQGI 460

Query: 273 --------------------------CQLI-KNVFFEDVKLGSALVDMYAKCGKIDDARR 305
                                     C  I KN    D++LG+ALVDM+++CG    A  
Sbjct: 461 PGDRVTMVGIASACGYLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMH 520

Query: 306 VFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365
           VF  M++++V  WT+ I      GN   A+ELF  M E  V+P+ V F+  L+AC H G 
Sbjct: 521 VFKRMEKRDVSAWTAAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGS 580

Query: 366 VDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
           VD+GR++F SME+ + ++P + HY CMVDLLGRAG LE+A+  +  MP +PN  VW +LL
Sbjct: 581 VDQGRQLFWSMEKAHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLL 640

Query: 426 SSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485
           ++CR H +VE+A+ AA ++ +L A +R G +V LSN  A+AGKW  V  +R +MK +GV 
Sbjct: 641 AACRKHKNVELAHYAAEKLTQL-APERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQ 699

Query: 486 KDTGCS 491
           K  G S
Sbjct: 700 KVPGSS 705



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 132/487 (27%), Positives = 225/487 (46%), Gaps = 47/487 (9%)

Query: 21  TLVPPNQTF-PPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGV--- 76
           TL P +    P  L+     +NP+T  S    L   +N  T     ++H  + K G+   
Sbjct: 4   TLFPSSTLLVPASLKE----ANPITRNSSSKLL---VNCKTLKELKQLHCDMMKKGLLCH 56

Query: 77  KPNTNISIKLLILHLKCGALK---YAGQMF--DELPQRTLSAYNYMIAGYLKNGQVEESL 131
           KP +N++ KL+   ++ G L+   YA   F  D+    +L  YN +I GY   G  ++++
Sbjct: 57  KPASNLN-KLIASSVQIGTLESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAI 115

Query: 132 SLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTA 191
            L  +++  G  PD YTF  +L A   C   + L    G  VH  +LK  ++ D  +  +
Sbjct: 116 LLYVQMLVMGIVPDKYTFPFLLSA---CSKILALSE--GVQVHGAVLKMGLEGDIFVSNS 170

Query: 192 LVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVY 251
           L+  Y + GK    R +FD MLE+NV+  TS+I+G+  +   ++A  +F +  E   V  
Sbjct: 171 LIHFYAECGKVDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAG-VEP 229

Query: 252 NAMIEGYSISIETARKALEVH---CQLIKNVFFE-DVKLGSALVDMYAKCGKIDDARRVF 307
           N +     IS     K LE+    C  I  +  E    + +ALVDMY KCG I  AR++F
Sbjct: 230 NPVTMVCVISACAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIF 289

Query: 308 DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367
           D    KN+  + +++  Y  +   +  L +   M +   +P+ VT L  ++AC   G + 
Sbjct: 290 DECANKNLVMYNTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLS 349

Query: 368 KGREIFESMERDYSMKPKMEHY----ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA 423
            G+         Y ++  +E +      ++D+  + G  E A K    MP K     W +
Sbjct: 350 VGKS-----SHAYVLRNGLEGWDNISNAIIDMYMKCGKREAACKVFEHMPNK-TVVTWNS 403

Query: 424 LLSSCRLHDDVEMANIAANEIFK---LNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           L++      D+E+A    +E+ +   ++ N   GA V +S        ++   EL  +M+
Sbjct: 404 LIAGLVRDGDMELAWRIFDEMLERDLVSWNTMIGALVQVS-------MFEEAIELFREMQ 456

Query: 481 LRGVLKD 487
            +G+  D
Sbjct: 457 NQGIPGD 463


>gi|225438894|ref|XP_002279137.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 628

 Score =  278 bits (710), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 162/468 (34%), Positives = 250/468 (53%), Gaps = 44/468 (9%)

Query: 58  SDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYM 117
           S T  + L+IHA + + G+  +  ++ KL   +   G L Y+  +F      ++  +  +
Sbjct: 40  SKTISHLLQIHAVLFRHGLDHHPILNFKLQRSYASLGRLDYSVALFGRTQNPSVFFWTAI 99

Query: 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQI 177
           I G+   G  E++L+   ++++ G  P+ +TFS ILK           P   G+ +H+Q 
Sbjct: 100 IHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSILKLC---------PIEPGKALHSQA 150

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
           +K    +D  + T L+D Y +GG    A+ +FD M EK+++  T+M++ +   G ++ A 
Sbjct: 151 VKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAKHGELDAAR 210

Query: 238 EIFRKTVEKDIVVYNAMIEGYS---------------------------ISIETA---RK 267
            +F    E+D V +N MI+GY+                           +S+ +A     
Sbjct: 211 VLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSVLSACGQLG 270

Query: 268 ALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMID 323
           ALE    VH  +  N    +V +G+ALVDMY+KCG ++DAR VFD +  K+V  W SMI 
Sbjct: 271 ALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKIDDKDVVAWNSMIV 330

Query: 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK 383
           GY  +G   +AL+LF  M    + P  +TF+G LSACGH+G V +G +IF  M+ +Y ++
Sbjct: 331 GYAMHGFSQEALQLFKSMCRMGLHPTNITFIGILSACGHSGWVTEGWDIFNKMKDEYGIE 390

Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANE 443
           PK+EHY CMV+LLGRAG +EQA + V  M  +P+  +W  LL +CRLH  + +       
Sbjct: 391 PKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPVLWGTLLGACRLHGKIALGEKIVEL 450

Query: 444 IFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
           +   N  +  G Y+ LSN  AA G WD V  LR  MK  GV K+ GCS
Sbjct: 451 LVDQNLAN-SGTYILLSNIYAAVGNWDGVARLRTMMKDSGVKKEPGCS 497


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  277 bits (709), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 153/433 (35%), Positives = 245/433 (56%), Gaps = 9/433 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H +I +  V  +  +   L+ ++ KC A++ A  ++D      +   + MI+GY+ 
Sbjct: 367 GKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVL 426

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  +E++ + R L+  G RP+    + +L A   C S   +   LG+ +H+  LK   +
Sbjct: 427 NGMSQEAVKMFRYLLEQGIRPNAVAIASVLPA---CASMAAM--KLGQELHSYALKNAYE 481

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               + +AL+D Y K G+   +  +F  +  K+ +   SMIS F   G  E+A  +FR+ 
Sbjct: 482 GRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREM 541

Query: 244 VEKDIVVYNAMIEGY---SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
             + +   N  I        S+       E+H  +IK     D+   SAL+DMY KCG +
Sbjct: 542 CMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNL 601

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           + A RVF+ M +KN  +W S+I  YG  G   +++ L   MQE   + ++VTFL  +SAC
Sbjct: 602 EWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSAC 661

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            HAG V +G  +F  M  +Y + P+MEH+ACMVDL  RAG L++A++ +++MP KP++ +
Sbjct: 662 AHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGI 721

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W ALL +CR+H +VE+A IA+ E+FKL+ ++  G YV +SN  A AG+WD V+++R  MK
Sbjct: 722 WGALLHACRVHRNVELAEIASQELFKLDPHN-SGYYVLMSNINAVAGRWDGVSKVRRLMK 780

Query: 481 LRGVLKDTGCSWV 493
              V K  G SWV
Sbjct: 781 DTKVQKIPGYSWV 793



 Score =  174 bits (441), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 193/369 (52%), Gaps = 10/369 (2%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           F+G+++H    K G++    ++  L+ ++ KC  L    ++F  +P+  L  +N MI+G 
Sbjct: 264 FFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGC 323

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           ++NG V+++L L   +  SG RPD  T   +L A T          N G+ +H  I++  
Sbjct: 324 VQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGF-----NQGKELHGYIVRNC 378

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           V  D  L +ALVD Y K      A+ V+D     +V+  ++MISG++  G  ++A ++FR
Sbjct: 379 VHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFR 438

Query: 242 KTVEKDI---VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
             +E+ I    V  A +     S+   +   E+H   +KN +     + SAL+DMYAKCG
Sbjct: 439 YLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCG 498

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           ++D +  +F  +  K+  TW SMI  + +NG P +AL LF  M    V+ + VT    LS
Sbjct: 499 RLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLS 558

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC     +  G+EI   + +   ++  +   + ++D+ G+ G+LE A +    MPEK N 
Sbjct: 559 ACASLPAIYYGKEIHGVVIKG-PIRADLFAESALIDMYGKCGNLEWAHRVFESMPEK-NE 616

Query: 419 DVWAALLSS 427
             W ++++S
Sbjct: 617 VSWNSIIAS 625



 Score =  122 bits (305), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 153/326 (46%), Gaps = 16/326 (4%)

Query: 64  GLKIHAHITKTGVKP-NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSA---YNYMIA 119
           GL++H      G+   +T +  +L+ +++     + A  +F  LP+   +    +N++I 
Sbjct: 58  GLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIR 117

Query: 120 GYLKNGQVEESLSLVRKLVS--SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQI 177
           G    G    +L    K+ +  S   PD +TF  ++K+     +       LGR+VH   
Sbjct: 118 GLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIA-----LGRLVHRTA 172

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
               +  D  + +AL+  Y  GG    AR VFD M E++ +    M+ G++  G V  A 
Sbjct: 173 RTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAV 232

Query: 238 EIFRKTVEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVFFEDVKLGSALVDM 293
           E+F            A +  + +S+      L    ++H   +K     +V + + LV M
Sbjct: 233 ELFGDMRASGCEPNFATLACF-LSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSM 291

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           YAKC  +DD  ++F  M + ++ TW  MI G  +NG  +QAL LFC MQ+  ++P+ VT 
Sbjct: 292 YAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTL 351

Query: 354 LGALSACGHAGLVDKGREIFESMERD 379
           +  L A       ++G+E+   + R+
Sbjct: 352 VSLLPALTDLNGFNQGKELHGYIVRN 377



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 5/151 (3%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           +YG +IH  + K  ++ +      L+ ++ KCG L++A ++F+ +P++   ++N +IA Y
Sbjct: 567 YYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASY 626

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
              G V+ES+SL+R +   G + D  TF  ++ A   C     +   L R+      +  
Sbjct: 627 GAYGLVKESVSLLRHMQEEGFKADHVTFLALVSA---CAHAGQVQEGL-RLFRCMTEEYQ 682

Query: 182 VKADDVLYTALVDSYVKGGKTSYA-RIVFDM 211
           +      +  +VD Y + GK   A  ++ DM
Sbjct: 683 IAPRMEHFACMVDLYSRAGKLDKAMELIVDM 713


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  277 bits (709), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 159/472 (33%), Positives = 258/472 (54%), Gaps = 47/472 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG----------------------- 100
           G +IH H+ K G++ +  +   L+ ++ + G L YA                        
Sbjct: 151 GKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTL 210

Query: 101 --------QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
                   ++F+E+P R   ++N MIAGY ++G+ EE+L+  +++  +   P+  T   +
Sbjct: 211 RGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTV 270

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L  S C +S       LG  V + I    + ++  L  AL+D Y K G    AR +F+ +
Sbjct: 271 L--SACAQSG---SLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGI 325

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRK----TVEKDIVVYNAMIEG--YSISIETAR 266
            EK++I    MI G+      ++A  +FRK     VE + V + +++    Y  +++  +
Sbjct: 326 CEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGK 385

Query: 267 KALEVHCQLIKNVF-FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
               +H  + K      +  L ++L+DMYAKCG I+ A++VF  M+ K++ +W +MI G 
Sbjct: 386 W---IHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGL 442

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
             +G+ N ALELF  M++   +P+ +TF+G LSAC HAGLV+ GR+ F SM  DY + PK
Sbjct: 443 AMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPK 502

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIF 445
           ++HY CM+DLLGRAG  ++A   +  M  KP+  +W +LL +CR+H +VE+   AA  +F
Sbjct: 503 LQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLF 562

Query: 446 KLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTES 497
           +L   + PGAYV LSN  A AG+WD V  +R K+  +G+ K  GCS +  +S
Sbjct: 563 ELEP-ENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDS 613



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 124/452 (27%), Positives = 215/452 (47%), Gaps = 47/452 (10%)

Query: 25  PNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLK-IHAHITKTGVKPNTNIS 83
           P+   PP   ++   S+P             +++   F  LK IH+ I KTG+  NT  +
Sbjct: 8   PSLVMPPPTLHFQPTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLH-NTQFA 66

Query: 84  IKLLILHLKC---GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSS 140
           +  LI        G L YA  +F+ + Q     +N MI G   +     ++    +++  
Sbjct: 67  LSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLC 126

Query: 141 GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGG 200
           G  P+ YTF  +LK  +C +         G+ +H  +LK  +++D  ++T+L++ Y + G
Sbjct: 127 GVEPNSYTFPFLLK--SCAKVGA---TQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNG 181

Query: 201 KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI 260
           +  YA +VF     ++ +  T++I+G+  +G ++DA  +F +   +D V +NAMI GY+ 
Sbjct: 182 ELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQ 241

Query: 261 S----------IETARKALEVHCQLIKNV------------------FFEDVKLGS---- 288
           S           E  R  +  +   +  V                  + ED  LGS    
Sbjct: 242 SGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRL 301

Query: 289 --ALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
             AL+DMY+KCG +D AR +F+ + +K++ +W  MI GY    +  +AL LF  MQ+  V
Sbjct: 302 VNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNV 361

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
           +PN VTF+  L AC + G +D G+ I   +++ +        +  ++D+  + G++E A 
Sbjct: 362 EPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAK 421

Query: 407 KFVLEMPEKPNS-DVWAALLSSCRLHDDVEMA 437
           +    M  KP S   W A++S   +H    MA
Sbjct: 422 QVFAGM--KPKSLGSWNAMISGLAMHGHANMA 451



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 38/127 (29%), Positives = 65/127 (51%), Gaps = 4/127 (3%)

Query: 32  KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVK-PNTNISIKLLILH 90
           K+Q  +   N +T  S+  A  +    D    G  IHA+I K  +   NT++   L+ ++
Sbjct: 355 KMQQSNVEPNDVTFVSILPACAYLGALD---LGKWIHAYIDKKFLGLTNTSLWTSLIDMY 411

Query: 91  LKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFS 150
            KCG ++ A Q+F  +  ++L ++N MI+G   +G    +L L R++   G  PD  TF 
Sbjct: 412 AKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFV 471

Query: 151 MILKAST 157
            +L A +
Sbjct: 472 GVLSACS 478


>gi|345505228|gb|AEN99838.1| chlororespiratory reduction 4, partial [Matthiola incana]
          Length = 584

 Score =  277 bits (709), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 155/473 (32%), Positives = 250/473 (52%), Gaps = 60/473 (12%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G+++H  + KTG+  +  +   L+ L+LKCG L +A Q+FD +PQR   +YN MI GY+
Sbjct: 111 FGMQVHGFLRKTGIYSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYV 170

Query: 123 KNGQVEESLSLV-------RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA 175
           K G +E +  L        + L+S      GYT S                   G  V +
Sbjct: 171 KCGLIESARELFDLMPREKKNLISWNCMISGYTQS-----------------EDGVNVAS 213

Query: 176 QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
           ++     + D + + +L+D YVK  +   A+ +FD+M  K+V+   +MI G+   GFV  
Sbjct: 214 KLFDEMPEKDLISWNSLIDGYVKHRRIEDAKSLFDLMPRKDVVTWATMIDGYAKLGFVHQ 273

Query: 236 AEEIFRKTVEKDIVVYNAMIEGY--------SISI-------------ETA--------- 265
           A+++F +  ++D+V YN+M+ GY        +I I             ET          
Sbjct: 274 AKKLFDEMPQRDVVAYNSMMAGYVQNKYHAEAIGIFNDMEKESHLSPDETTLVIVLSAIA 333

Query: 266 -----RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
                 KA+++H  ++ N F    KLG AL+D Y+KCG I  + RVF+ ++ K++  W +
Sbjct: 334 QLGRLSKAVDIHLYIMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNA 393

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
           MI G   +G    A ++   +++  ++P+ +TF+G L+AC H+GLV +G   FE M R +
Sbjct: 394 MIGGLAIHGLGESAFDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKH 453

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIA 440
            ++PK++HY CMVD+L R+GS+E A   + EMP +PN  +W   L++C  H + E   + 
Sbjct: 454 KIEPKLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSNHKEFETGELV 513

Query: 441 ANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           A  +F L     P ++V LSN  A+ G W  V  +R  MK R + K  GCSW+
Sbjct: 514 AKHLF-LQGGYNPSSFVLLSNMYASFGMWKEVRRVRTTMKERKLRKIPGCSWI 565



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 117/474 (24%), Positives = 207/474 (43%), Gaps = 68/474 (14%)

Query: 69  AHITKTGVKPNTNISIKLLILHLKCGALKYAGQ----MFDELPQRTLSA------YNYMI 118
           A    TG   N N++ ++ +L        Y  +    +F E    + S       +N +I
Sbjct: 7   ARXITTGFIKNPNLTTRI-VLSFSASRRSYLAEFARCIFHEYHVSSYSVEEDPFLWNAVI 65

Query: 119 AGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
             +        +L L   ++ +    D ++ S++LKA  C R       + G  VH  + 
Sbjct: 66  KSFSHGVDPRNALLLFCLMIENSVSVDKFSISLVLKA--CSRLGFV---DFGMQVHGFLR 120

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
           K  + +D  L   L+  Y+K G   +AR VFD M +++ +   SMI G++  G +E A E
Sbjct: 121 KTGIYSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLIESARE 180

Query: 239 IF--RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
           +F      +K+++ +N MI GY+ S       + V  +L   +  +D+   ++L+D Y K
Sbjct: 181 LFDLMPREKKNLISWNCMISGYTQS----EDGVNVASKLFDEMPEKDLISWNSLIDGYVK 236

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF------------------ 338
             +I+DA+ +FD M +K+V TW +MIDGY K G  +QA +LF                  
Sbjct: 237 HRRIEDAKSLFDLMPRKDVVTWATMIDGYAKLGFVHQAKKLFDEMPQRDVVAYNSMMAGY 296

Query: 339 --------------CMMQECCVQPNYVTFLGALSACGHAGLVDKGREI-FESMERDYSMK 383
                          M +E  + P+  T +  LSA    G + K  +I    M+  + + 
Sbjct: 297 VQNKYHAEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFRLG 356

Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANE 443
            K+     ++D   + GS++++++ V E  E  + D W A++    +H   E A     +
Sbjct: 357 GKLG--VALIDTYSKCGSIQKSMR-VFEEIENKSIDHWNAMIGGLAIHGLGESAFDMLLQ 413

Query: 444 IFKLNANDRPGAYVALSNTLAAAGKWDSVTE-------LREKMKLRGVLKDTGC 490
           I K +       ++ + N  + +G    V E       +R K K+   L+  GC
Sbjct: 414 IEKRSIKPDDITFIGVLNACSHSG---LVKEGLLCFELMRRKHKIEPKLQHYGC 464


>gi|297737063|emb|CBI26264.3| unnamed protein product [Vitis vinifera]
          Length = 583

 Score =  277 bits (709), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 169/461 (36%), Positives = 253/461 (54%), Gaps = 20/461 (4%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKP-NTNISIKLLILHLKCGALKYAGQ 101
           L+  SL S ++  +++     G   HA I KT   P  + I   L+ ++ K      A  
Sbjct: 4   LSPNSLASLVESAVSTQCSRLGRAAHAQIIKTLDNPLPSFIYNHLVNMYSKLDRPNSAQL 63

Query: 102 MFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161
           +    P R++  +  +IAG ++NG+   +L     +     +P+ +TF    KAS   RS
Sbjct: 64  LLSLTPNRSVVTWTALIAGSVQNGRFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRS 123

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
             PL   +G+ VHA  +K    +D  +  +  D Y K G T  AR +FD M E+N+    
Sbjct: 124 --PL---VGKQVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWN 178

Query: 222 SMISGFMSQGFVEDAEEIF----RKTVE-KDIVVYNAMIEGYSISIETARKALEVHCQLI 276
           + +S  + +G  +DA   F    ++ +E  D +V + +     +S+    K+  VH   +
Sbjct: 179 AYLSNSVLEGRYDDALTAFIEARKEGIEPTDFMVSSVLSACAGLSVLEVGKS--VHTLAV 236

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           K     ++ +GSALVDMY KCG I+DA R FD M ++N+ TW +MI GY   G  + A+ 
Sbjct: 237 KACVVGNIFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVT 296

Query: 337 LFCMMQECC----VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACM 392
           LF  M   C    V PNYVTF+  LSAC  AG V+ G EIFESM   Y ++P  EHYAC+
Sbjct: 297 LFDEMT--CGSHRVAPNYVTFVCVLSACSRAGSVNVGMEIFESMRGRYGIEPGAEHYACV 354

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR 452
           VDLLGRAG +EQA +F+ +MP +P   VW ALL + ++    E+  +AA+ +F+L+  D 
Sbjct: 355 VDLLGRAGMVEQAYQFIKKMPIRPTVSVWGALLGASKMFGKSELGKVAADNLFELDPLD- 413

Query: 453 PGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            G +V LSN  AAAG+W+  T +R++MK  G+ K  GCSW+
Sbjct: 414 SGNHVLLSNMFAAAGRWEEATLVRKEMKDVGIKKGAGCSWI 454



 Score = 86.3 bits (212), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 108/235 (45%), Gaps = 24/235 (10%)

Query: 6   RIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGL 65
           R  S++F  ++ R  ++ P + TFP   +   SL +PL                    G 
Sbjct: 88  RFTSALFHFSNMRRDSIQPNDFTFPCAFKASGSLRSPLV-------------------GK 128

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++HA   K G   +  +      ++ K G  + A +MFDE+P+R ++ +N  ++  +  G
Sbjct: 129 QVHALAVKAGQISDVFVGCSAFDMYSKAGLTEEARKMFDEMPERNIATWNAYLSNSVLEG 188

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           + +++L+   +    G  P  +  S +L  S C   +V     +G+ VH   +K  V  +
Sbjct: 189 RYDDALTAFIEARKEGIEPTDFMVSSVL--SACAGLSV---LEVGKSVHTLAVKACVVGN 243

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
             + +ALVD Y K G    A   FD M E+N++   +MI G+  QG  + A  +F
Sbjct: 244 IFVGSALVDMYGKCGSIEDAERAFDEMPERNLVTWNAMIGGYAHQGQADMAVTLF 298


>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
          Length = 803

 Score =  277 bits (709), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 147/433 (33%), Positives = 245/433 (56%), Gaps = 11/433 (2%)

Query: 71  ITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEES 130
           + + G +PN      LL   +K   +  A  MFD++ + +++ +N +++GY +  Q +++
Sbjct: 342 MQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDT 401

Query: 131 LSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT 190
           + L R++     +PD  T ++IL  S+C +  +    + GR VH+  ++  +  D  + +
Sbjct: 402 IELFRRMQHQNVQPDRTTLAVIL--SSCSKLGI---LDFGRQVHSASVRFLLHNDMFVAS 456

Query: 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIV- 249
            LVD Y K G+   AR +F+ M E++V+C  S+ISG       ++A + F++  E  I+ 
Sbjct: 457 GLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMRENGIMP 516

Query: 250 ---VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRV 306
               Y +MI   S  + +     ++H Q++K+ + ++V +GSAL+DMYAKCG +DDAR  
Sbjct: 517 TESSYASMINSCS-RLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLF 575

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           FD M  KN+  W  MI GY +NG  ++A+ELF  M     +P+ VTF+  L+ C H+GLV
Sbjct: 576 FDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLV 635

Query: 367 DKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           DK    F SME  Y + P  EHY C++D LGRAG   +    + +MP K +  +W  LL+
Sbjct: 636 DKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLA 695

Query: 427 SCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLK 486
           +C +H + E+   AA  +F+++  + P  YV LSN  A+ G+    + +R  M  RGV+K
Sbjct: 696 ACVVHHNAELGKCAAEHLFRIDPKN-PSPYVLLSNIYASLGRHGDASAVRALMSNRGVVK 754

Query: 487 DTGCSWVGTESGL 499
             G SW+  + G+
Sbjct: 755 GRGYSWIDQKDGV 767



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 166/353 (47%), Gaps = 27/353 (7%)

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN-GQVEESLSLVRKLVSSGERPDGYTFS 150
           + G L  A  +   +P+R   ++N +I+   ++ G   E++ +  ++ + G  P  +T +
Sbjct: 86  RAGDLDAARDLLGGMPRRNAVSWNTVISALARSPGDGGEAVEMYGRMRAEGLLPTHFTLA 145

Query: 151 MILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFD 210
            +L A   C     L    GR  H   +K  + A+  +  AL+  Y K G    A  +F 
Sbjct: 146 SVLSA---CGGLAALGD--GRRCHGVAVKVGLDANQFVENALLGMYTKCGSVGDAVRLFY 200

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEG--------Y 258
            M   N +  T+M+ G    G ++DA  +F    R  V  D V  ++++          Y
Sbjct: 201 GMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGACAQACATDY 260

Query: 259 SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTW 318
           S++    R    +H  +++  F  D  +G++L+DMY KC ++D+A +VF+ +    + +W
Sbjct: 261 SVA-RAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSW 319

Query: 319 TSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER 378
             +I G+G+ G+  +A+E+  +MQE   +PN VT+   L++C  A  V   R +F+ + R
Sbjct: 320 NILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKISR 379

Query: 379 DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSC 428
                P +  +  ++    +    +  ++    M     +P+    A +LSSC
Sbjct: 380 -----PSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSC 427



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 109/204 (53%), Gaps = 11/204 (5%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G ++H+   +  +  +  ++  L+ ++ KCG +  A  +F+++ +R +  +N +I+G  
Sbjct: 435 FGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLT 494

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR-SNVPLPRNLGRMVHAQILKCD 181
            +   +E+    +++  +G  P   +++ ++  ++C R S++P     GR +HAQ++K  
Sbjct: 495 IHSLNKEAFDFFKQMRENGIMPTESSYASMI--NSCSRLSSIP----HGRQIHAQVMKDG 548

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
              +  + +AL+D Y K G    AR+ FD M+ KN++    MI G+   G  + A E+F 
Sbjct: 549 YDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFE 608

Query: 242 K--TVEK--DIVVYNAMIEGYSIS 261
              T E+  D V + A++ G S S
Sbjct: 609 YMLTTEQKPDAVTFIAVLTGCSHS 632


>gi|326488203|dbj|BAJ89940.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 637

 Score =  277 bits (709), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 158/479 (32%), Positives = 257/479 (53%), Gaps = 14/479 (2%)

Query: 23  VPPNQTF----PPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKP 78
           +PPN  F    PP   N    S+P       S LQ  + S +   G ++H  +  +G+ P
Sbjct: 36  LPPNTGFAASPPPPSTNPRLASSPHAYHHHTSILQSCVASGSLRAGRQLHGRLLVSGLGP 95

Query: 79  NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLV 138
           +T +S KL+ L+  CG + +A ++FD +P+R +  +N +I  Y + G  E ++ L R +V
Sbjct: 96  DTVLSTKLVDLYAACGQVGHARRLFDGMPKRNVFLWNVLIRAYAREGPREAAVRLYRGMV 155

Query: 139 SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVK 198
             G  PD +T+ ++LKA   C + + L    GR VH ++       D  +   +VD Y K
Sbjct: 156 EHGVEPDNFTYPLVLKA---CAALLDL--ETGREVHQRVSGTRWGQDVFVCAGVVDMYAK 210

Query: 199 GGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY 258
            G    AR VFD +  ++ +   SMI+ +   G   +A  + R      I    A +   
Sbjct: 211 CGCVDDARAVFDGIAVRDAVVWNSMIAAYGQNGRPMEALALCRDMAANGIGPTIATLVSA 270

Query: 259 SISIETAR---KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
             +   A    +  E+H    +  F    KL ++LVDMYAK G +  AR +F+ + ++ +
Sbjct: 271 VSAAADAAALPRGRELHGFGWRRGFGLQDKLKTSLVDMYAKSGWVQVARVLFEQLMKREL 330

Query: 316 FTWTSMIDGYGKNGNPNQALELFCMMQ-ECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374
            +W +MI GYG +G+ ++AL LF  M+ +  V P+ +TF+G LSAC H G+V++ +E F 
Sbjct: 331 VSWNAMICGYGMHGHADEALALFNKMKGDAQVTPDNITFVGVLSACNHGGMVEEAKEFFY 390

Query: 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDV 434
            M   YS+KP ++HY C++D+LG  G  E+A   +  M  +P+S +W ALL+ C++H +V
Sbjct: 391 LMVNAYSIKPTVQHYTCVIDVLGHTGRFEEAYDLIKGMSIEPDSGIWGALLNGCKIHKNV 450

Query: 435 EMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           E+  +A  ++ +L   D  G YV LSN  A +GKW+    +R+ M  RG+ K   CSW+
Sbjct: 451 ELGELALQKLIELEPED-AGNYVHLSNIYAQSGKWEKAARVRKLMTNRGLKKILACSWI 508


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 153/433 (35%), Positives = 245/433 (56%), Gaps = 9/433 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H +I +  V  +  +   L+ ++ KC A++ A  ++D      +   + MI+GY+ 
Sbjct: 367 GKELHGYIVRNCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVL 426

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  +E++ + R L+  G RP+    + +L A   C S   +   LG+ +H+  LK   +
Sbjct: 427 NGMSQEAVKMFRYLLEQGIRPNAVAIASVLPA---CASMAAM--KLGQELHSYALKNAYE 481

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               + +AL+D Y K G+   +  +F  +  K+ +   SMIS F   G  E+A  +FR+ 
Sbjct: 482 GRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREM 541

Query: 244 VEKDIVVYNAMIEGY---SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
             + +   N  I        S+       E+H  +IK     D+   SAL+DMY KCG +
Sbjct: 542 CMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNL 601

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           + A RVF+ M +KN  +W S+I  YG  G   +++ L   MQE   + ++VTFL  +SAC
Sbjct: 602 EWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFLALVSAC 661

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            HAG V +G  +F  M  +Y + P+MEH+ACMVDL  RAG L++A++ +++MP KP++ +
Sbjct: 662 AHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPFKPDAGI 721

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W ALL +CR+H +VE+A IA+ E+FKL+ ++  G YV +SN  A AG+WD V+++R  MK
Sbjct: 722 WGALLHACRVHRNVELAEIASQELFKLDPHN-SGYYVLMSNINAVAGRWDGVSKVRRLMK 780

Query: 481 LRGVLKDTGCSWV 493
              V K  G SWV
Sbjct: 781 DTKVQKIPGYSWV 793



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/369 (30%), Positives = 193/369 (52%), Gaps = 10/369 (2%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           F+G+++H    K G++    ++  L+ ++ KC  L    ++F  +P+  L  +N MI+G 
Sbjct: 264 FFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGC 323

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           ++NG V+++L L   +  SG RPD  T   +L A T          N G+ +H  I++  
Sbjct: 324 VQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGF-----NQGKELHGYIVRNC 378

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           V  D  L +ALVD Y K      A+ V+D     +V+  ++MISG++  G  ++A ++FR
Sbjct: 379 VHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFR 438

Query: 242 KTVEKDI---VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
             +E+ I    V  A +     S+   +   E+H   +KN +     + SAL+DMYAKCG
Sbjct: 439 YLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCG 498

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           ++D +  +F  +  K+  TW SMI  + +NG P +AL LF  M    V+ + VT    LS
Sbjct: 499 RLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLS 558

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC     +  G+EI   + +   ++  +   + ++D+ G+ G+LE A +    MPEK N 
Sbjct: 559 ACASLPAIYYGKEIHGVVIKG-PIRADLFAESALIDMYGKCGNLEWAHRVFESMPEK-NE 616

Query: 419 DVWAALLSS 427
             W ++++S
Sbjct: 617 VSWNSIIAS 625



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 87/326 (26%), Positives = 153/326 (46%), Gaps = 16/326 (4%)

Query: 64  GLKIHAHITKTGVKP-NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSA---YNYMIA 119
           GL++H      G+   +T +  +L+ +++     + A  +F  LP+   +    +N++I 
Sbjct: 58  GLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIR 117

Query: 120 GYLKNGQVEESLSLVRKLVS--SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQI 177
           G    G    +L    K+ +  S   PD +TF  ++K+     +       LGR+VH   
Sbjct: 118 GLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIA-----LGRLVHRTA 172

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
               +  D  + +AL+  Y  GG    AR VFD M E++ +    M+ G++  G V  A 
Sbjct: 173 RTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAV 232

Query: 238 EIFRKTVEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVFFEDVKLGSALVDM 293
           E+F            A +  + +S+      L    ++H   +K     +V + + LV M
Sbjct: 233 ELFGDMRASGCEPNFATLACF-LSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSM 291

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           YAKC  +DD  ++F  M + ++ TW  MI G  +NG  +QAL LFC MQ+  ++P+ VT 
Sbjct: 292 YAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTL 351

Query: 354 LGALSACGHAGLVDKGREIFESMERD 379
           +  L A       ++G+E+   + R+
Sbjct: 352 VSLLPALTDLNGFNQGKELHGYIVRN 377



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 76/151 (50%), Gaps = 5/151 (3%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           +YG +IH  + K  ++ +      L+ ++ KCG L++A ++F+ +P++   ++N +IA Y
Sbjct: 567 YYGKEIHGVVIKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASY 626

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
              G V+ES+SL+R +   G + D  TF  ++ A   C     +   L R+      +  
Sbjct: 627 GAYGLVKESVSLLRHMQEEGFKADHVTFLALVSA---CAHAGQVQEGL-RLFRCMTEEYQ 682

Query: 182 VKADDVLYTALVDSYVKGGKTSYA-RIVFDM 211
           +      +  +VD Y + GK   A  ++ DM
Sbjct: 683 IAPRMEHFACMVDLYSRAGKLDKAMELIVDM 713


>gi|86438643|emb|CAJ26357.1| Selenium binding protein [Brachypodium sylvaticum]
          Length = 624

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 147/432 (34%), Positives = 251/432 (58%), Gaps = 12/432 (2%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           KIH H+  +  + +  +   L+ L+ KCG++  A ++FD++ ++ + ++  +IAGY +N 
Sbjct: 72  KIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQND 131

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              E++ L+  ++    +P+G+TF+ +LKA+     +      +G  +HA  +KCD   D
Sbjct: 132 MPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADS-----GIGGQIHALAVKCDWHED 186

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----R 241
             + +AL+D Y + GK   A  VFD +  KN +   ++ISGF  +G  E A  +F    R
Sbjct: 187 VYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQR 246

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
              E     Y+++  G +  I    +   VH  ++K+       +G+ ++DMYAK G + 
Sbjct: 247 NGFEATHFTYSSIFSGLA-GIGALEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMI 305

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           DAR+VF+ +  K++ TW SM+  + + G   +A+  F  M++  +  N +TFL  L+AC 
Sbjct: 306 DARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQITFLCILTACS 365

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
           H GLV +G+  F+ M ++Y+++P++EHY  +VDLLGRAG L  AL F+ +MP +P + VW
Sbjct: 366 HGGLVKEGKHYFD-MIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVW 424

Query: 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
            ALL++CR+H + ++   AA+ +F+L+ +D  G  V L N  A+ G WD+   +R+ MK 
Sbjct: 425 GALLAACRMHKNAKVGQFAADHVFQLDPDD-SGPPVLLYNIYASTGHWDAAARVRKMMKA 483

Query: 482 RGVLKDTGCSWV 493
            GV K+  CSWV
Sbjct: 484 TGVKKEPACSWV 495



 Score =  106 bits (264), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 129/264 (48%), Gaps = 11/264 (4%)

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
            R +H  +     + D  L  +L+  Y K G    A  VFD M +K+++  TS+I+G+  
Sbjct: 70  ARKIHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRKKDMVSWTSLIAGYAQ 129

Query: 230 QGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
                +A      + +   + +   + ++++      ++     ++H   +K  + EDV 
Sbjct: 130 NDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSGIGG-QIHALAVKCDWHEDVY 188

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           +GSAL+DMYA+CGK+D A  VFD +  KN  +W ++I G+ + G+   AL +F  MQ   
Sbjct: 189 VGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNG 248

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA--CMVDLLGRAGSLE 403
            +  + T+    S     G +++G+ +   M +    + K+  +    M+D+  ++GS+ 
Sbjct: 249 FEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKS---RQKLTAFVGNTMLDMYAKSGSMI 305

Query: 404 QALKFVLEMPEKPNSDVWAALLSS 427
            A K V E     +   W ++L++
Sbjct: 306 DARK-VFERVLNKDLVTWNSMLTA 328



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 67/246 (27%), Positives = 115/246 (46%), Gaps = 12/246 (4%)

Query: 250 VYNAMIEG--YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVF 307
           VY+A I     S +++ ARK   +H  L  + F  D  L ++L+ +Y KCG + +A +VF
Sbjct: 53  VYHAFITACAQSKNLDDARK---IHGHLASSRFEGDAFLDNSLIHLYCKCGSVVEAHKVF 109

Query: 308 DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367
           D M++K++ +WTS+I GY +N  P +A+ L   M +   +PN  TF   L A G      
Sbjct: 110 DKMRKKDMVSWTSLIAGYAQNDMPAEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSG 169

Query: 368 KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
            G +I  ++         +   + ++D+  R G ++ A   V +  +  N   W AL+S 
Sbjct: 170 IGGQI-HALAVKCDWHEDVYVGSALLDMYARCGKMDMATA-VFDKLDSKNGVSWNALISG 227

Query: 428 CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA-----AGKWDSVTELREKMKLR 482
                D E A +   E+ +         Y ++ + LA       GKW     ++ + KL 
Sbjct: 228 FARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIGALEQGKWVHAHMVKSRQKLT 287

Query: 483 GVLKDT 488
             + +T
Sbjct: 288 AFVGNT 293



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 95/208 (45%), Gaps = 8/208 (3%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           N  T  SL  A   Y +S     G +IHA   K     +  +   LL ++ +CG +  A 
Sbjct: 151 NGFTFASLLKAAGAYADSGI---GGQIHALAVKCDWHEDVYVGSALLDMYARCGKMDMAT 207

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
            +FD+L  +   ++N +I+G+ + G  E +L +  ++  +G     +T+S I        
Sbjct: 208 AVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQRNGFEATHFTYSSIFSGLAGIG 267

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           +        G+ VHA ++K   K    +   ++D Y K G    AR VF+ +L K+++  
Sbjct: 268 A-----LEQGKWVHAHMVKSRQKLTAFVGNTMLDMYAKSGSMIDARKVFERVLNKDLVTW 322

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDI 248
            SM++ F   G  ++A   F +  +  I
Sbjct: 323 NSMLTAFAQYGLGKEAVSHFEEMRKSGI 350


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 156/458 (34%), Positives = 268/458 (58%), Gaps = 15/458 (3%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           N +T T+  S+    ++ +    G++IH  +  +G   ++ IS  L+ ++ KCG L+ A 
Sbjct: 206 NSVTITTAISSCARLLDLNR---GMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAI 262

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           ++F+++P++T+ A+N MI+GY   G +   + L +++ + G +P   T S ++    C R
Sbjct: 263 EIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIM--VCSR 320

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           S   L    G+ VH   ++  ++ D  + ++L+D Y K GK   A  +F ++ +  V+  
Sbjct: 321 SARLLE---GKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSW 377

Query: 221 TSMISGFMSQGFVEDAEEIF---RKT-VEKDIVVYNAMIEGYSISIETARKALEVHCQLI 276
             MISG++++G + +A  +F   RK+ VE D + + +++   S  +    K  E+H  +I
Sbjct: 378 NVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACS-QLAALEKGKEIHNLII 436

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           +     +  +  AL+DMYAKCG +D+A  VF  + ++++ +WTSMI  YG +G+   ALE
Sbjct: 437 EKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGALE 496

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           LF  M +  V+P+ V FL  LSACGHAGLVD+G   F  M   Y + P++EHY+C++DLL
Sbjct: 497 LFAEMLQSNVKPDRVAFLAILSACGHAGLVDEGCYYFNQMINVYGIIPRVEHYSCLIDLL 556

Query: 397 GRAGSLEQALKFVLEMPE-KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA 455
           GRAG L +A + + + PE + + ++ + L S+CRLH ++++    A  +   + +D    
Sbjct: 557 GRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDD-SST 615

Query: 456 YVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           Y+ LSN  A+A KWD V  +R KMK  G+ K+ GCSW+
Sbjct: 616 YILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWI 653



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 205/414 (49%), Gaps = 18/414 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH  + KTG+  +  +   L+ ++ KC A + A  +F+E+P++ ++ +N +I+ Y +
Sbjct: 125 GKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQ 184

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G  +++L     +   G  P+  T +  +  S+C R    L  N G  +H +++     
Sbjct: 185 SGNFKDALEYFGLMRRFGFEPNSVTITTAI--SSCAR---LLDLNRGMEIHEELINSGFL 239

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  + +ALVD Y K G    A  +F+ M +K V+   SMISG+  +G +    ++F++ 
Sbjct: 240 LDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRM 299

Query: 244 VEKDIVVYNAMIEGYSISIETARKALE---VHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
             + +      +    +    + + LE   VH   I+N    DV + S+L+D+Y KCGK+
Sbjct: 300 YNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKV 359

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           + A ++F  + +  V +W  MI GY   G   +AL LF  M++  V+ + +TF   L+AC
Sbjct: 360 ELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTAC 419

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEH----YACMVDLLGRAGSLEQALKFVLEMPEKP 416
                ++KG+EI      +  ++ K+++       ++D+  + G++++A      +P K 
Sbjct: 420 SQLAALEKGKEI-----HNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP-KR 473

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
           +   W +++++   H     A     E+ + N      A++A+ +    AG  D
Sbjct: 474 DLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDRVAFLAILSACGHAGLVD 527



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 111/381 (29%), Positives = 184/381 (48%), Gaps = 14/381 (3%)

Query: 52  LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRT- 110
           L+  +NS +   G  IH  +   G++ +  +   L+  +L C    +A  +FD +     
Sbjct: 10  LRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNMENPCE 69

Query: 111 LSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNL 169
           +S +N ++AGY KN    E+L L  KL+     +PD YT+  + KA       V     L
Sbjct: 70  ISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYV-----L 124

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           G+M+H  ++K  +  D V+ ++LV  Y K      A  +F+ M EK+V C  ++IS +  
Sbjct: 125 GKMIHTCLIKTGLMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQ 184

Query: 230 QGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
            G  +DA E F    R   E + V     I   +  ++  R  +E+H +LI + F  D  
Sbjct: 185 SGNFKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNR-GMEIHEELINSGFLLDSF 243

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           + SALVDMY KCG ++ A  +F+ M +K V  W SMI GYG  G+    ++LF  M    
Sbjct: 244 ISSALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEG 303

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
           V+P   T    +  C  +  + +G+ +     R+  ++P +   + ++DL  + G +E A
Sbjct: 304 VKPTLTTLSSLIMVCSRSARLLEGKFVHGYTIRN-RIQPDVFVNSSLMDLYFKCGKVELA 362

Query: 406 LKFVLEMPEKPNSDVWAALLS 426
            K    +P K     W  ++S
Sbjct: 363 EKIFKLIP-KSKVVSWNVMIS 382



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 144/292 (49%), Gaps = 21/292 (7%)

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           G+++H +++   ++ D  L   L++ Y+      +A+ VFD M      C  S+ +G M+
Sbjct: 22  GKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNMENP---CEISLWNGLMA 78

Query: 230 QGFVE-----DAEEIFRKTV-----EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
            G+ +     +A E+F K +     + D   Y ++ +     +        +H  LIK  
Sbjct: 79  -GYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACG-GLHRYVLGKMIHTCLIKTG 136

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
              D+ +GS+LV MY KC   + A  +F+ M +K+V  W ++I  Y ++GN   ALE F 
Sbjct: 137 LMMDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFG 196

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
           +M+    +PN VT   A+S+C     +++G EI E +     +       A +VD+ G+ 
Sbjct: 197 LMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSA-LVDMYGKC 255

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451
           G LE A++   +MP+K     W +++S   L  D+    I+  ++FK   N+
Sbjct: 256 GHLEMAIEIFEQMPKK-TVVAWNSMISGYGLKGDI----ISCIQLFKRMYNE 302


>gi|125533803|gb|EAY80351.1| hypothetical protein OsI_35522 [Oryza sativa Indica Group]
          Length = 470

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 148/435 (34%), Positives = 255/435 (58%), Gaps = 18/435 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G + HA     G  P+  +   L++++ +CG  + A ++FD +   ++ AYN ++A    
Sbjct: 25  GEQAHARAVVGGWLPDATLETDLVLMYCRCGERRRARRVFDGMRAPSMHAYNVLLAA--- 81

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRN-LGRMVHAQILKCDV 182
                +++ +  +L++SG RPDGY+   +++A +       LP   LG ++H   ++  +
Sbjct: 82  -SPPRDAMEVFSRLLASGLRPDGYSVPAVVRACS------ELPDAVLGGVIHGFAVRLGL 134

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             + V+  AL+D Y K G    A  VFD M E++ +    M++G+   G   +  EIF +
Sbjct: 135 MGNVVVAAALLDMYAKAGFLDDAVRVFDEMTERDAVVWNCMVAGYARAGRAVETFEIFSR 194

Query: 243 TVEKDIVVYNAMIEGYSISIETAR-----KALEVHCQLIKNVFFE-DVKLGSALVDMYAK 296
              + + + N +    S+    A+     K  E+H ++++ + F+ D+ +G+AL++MYAK
Sbjct: 195 AQVEAVNMVNGLQAVPSVLNICAKEGELMKGREIHGRMVRCLAFDSDIAVGNALINMYAK 254

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG+++ ++ VF  MQQ++V +W++MI  Y  +G   QAL+++  M    V+PN++TF   
Sbjct: 255 CGRVNVSQAVFSGMQQRDVVSWSTMIHSYSIHGKGEQALKVYMEMLSEGVKPNWITFTSV 314

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           LS+C H+GLV +GR+IFESM + + + P  EHYACMVDLLGRAG++E+A+  + +MP +P
Sbjct: 315 LSSCSHSGLVTEGRKIFESMTKVHGVHPAAEHYACMVDLLGRAGAIEEAVGLIRKMPMEP 374

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
            + VW ALLS+C +H++V++  IAA  +F+L        YV L     A G+ D V  LR
Sbjct: 375 CASVWGALLSACAMHNNVDVGEIAAFRLFELEEGSASN-YVTLCGIYDAVGQSDGVAGLR 433

Query: 477 EKMKLRGVLKDTGCS 491
            +M+  G++K  GCS
Sbjct: 434 SRMRELGMVKTPGCS 448



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 154/343 (44%), Gaps = 25/343 (7%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           S+P+ ++          G  IH    + G+  N  ++  LL ++ K G L  A ++FDE+
Sbjct: 105 SVPAVVRACSELPDAVLGGVIHGFAVRLGLMGNVVVAAALLDMYAKAGFLDDAVRVFDEM 164

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLV-RKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
            +R    +N M+AGY + G+  E+  +  R  V +    +G     +      C     L
Sbjct: 165 TERDAVVWNCMVAGYARAGRAVETFEIFSRAQVEAVNMVNG--LQAVPSVLNICAKEGEL 222

Query: 166 PRNLGRMVHAQILKC-DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
            +  GR +H ++++C    +D  +  AL++ Y K G+ + ++ VF  M +++V+  ++MI
Sbjct: 223 MK--GREIHGRMVRCLAFDSDIAVGNALINMYAKCGRVNVSQAVFSGMQQRDVVSWSTMI 280

Query: 225 SGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSIS--IETARKALEVHCQLIKN 278
             +   G  E A     E+  + V+ + + + +++   S S  +   RK  E   ++  +
Sbjct: 281 HSYSIHGKGEQALKVYMEMLSEGVKPNWITFTSVLSSCSHSGLVTEGRKIFESMTKV--H 338

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT-WTSMIDGYGKNGNPN----Q 333
                 +  + +VD+  + G I++A  +   M  +   + W +++     + N +     
Sbjct: 339 GVHPAAEHYACMVDLLGRAGAIEEAVGLIRKMPMEPCASVWGALLSACAMHNNVDVGEIA 398

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGH----AGLVDKGREI 372
           A  LF + +      NYVT  G   A G     AGL  + RE+
Sbjct: 399 AFRLFELEEGS--ASNYVTLCGIYDAVGQSDGVAGLRSRMREL 439



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 6/162 (3%)

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
           R   + H + +   +  D  L + LV MY +CG+   ARRVFD M+  ++  +  ++   
Sbjct: 23  RPGEQAHARAVVGGWLPDATLETDLVLMYCRCGERRRARRVFDGMRAPSMHAYNVLL--- 79

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
                P  A+E+F  +    ++P+  +    + AC        G  I     R   +   
Sbjct: 80  -AASPPRDAMEVFSRLLASGLRPDGYSVPAVVRACSELPDAVLGGVIHGFAVR-LGLMGN 137

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
           +   A ++D+  +AG L+ A++   EM E+ ++ VW  +++ 
Sbjct: 138 VVVAAALLDMYAKAGFLDDAVRVFDEMTER-DAVVWNCMVAG 178


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 153/434 (35%), Positives = 249/434 (57%), Gaps = 16/434 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H  I + G + +  +   L+ L+ KCG +  A  +F  L  RT+ ++  +I+GY +
Sbjct: 192 GRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQ 251

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NGQ  E+L +  ++  +  RPD      +L+A T            G+ +H  ++K  ++
Sbjct: 252 NGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVED-----LEHGKSIHGCVIKMGLE 306

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR-- 241
            +  L  +L   Y K G    AR+ F+ +   ++I   +MISG++  G+ E+A E+FR  
Sbjct: 307 CEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLM 366

Query: 242 --KTVEKDIVVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
             K +  D +   + I   +   S+E AR   E    +  + F  DV + ++L+D YAKC
Sbjct: 367 KSKNIRPDSITVTSSIAACAQIGSLELARWMDE---YISMSEFRNDVIVNTSLIDTYAKC 423

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G +D AR VFD +  K+V  W++M+ GYG +G   +++ LF  M++  V PN VTF+G L
Sbjct: 424 GSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLL 483

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           +AC ++GLV++G ++F  M RDY ++P+ +HYAC+VDLLGRAG L++A  FV+ MP +P 
Sbjct: 484 TACKNSGLVEEGWDLFHRM-RDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPG 542

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
             VW ALLS+C++H  V +   AA  +F L+  +  G YV LSN  A++  WD V ++R 
Sbjct: 543 VSVWGALLSACKIHRHVTLGEYAAERLFSLDPYN-TGHYVQLSNLYASSCLWDCVAKVRV 601

Query: 478 KMKLRGVLKDTGCS 491
            M+ +G+ K  G S
Sbjct: 602 LMREKGLTKHLGYS 615



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 205/424 (48%), Gaps = 14/424 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +I+A +  TG++    +  KL+      G +  A ++FD+ P   +  +N ++  Y ++G
Sbjct: 93  QIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHG 152

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR-NLGRMVHAQILKCDVKA 184
               ++ +  ++  +   PDG++F  +LKA +       LP   +GR VH QI +   ++
Sbjct: 153 FFGHAIEMYARMQVACVSPDGFSFPCVLKACSA------LPALEMGRRVHGQIFRHGFES 206

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF---R 241
           D  +   LV  Y K G+   A  VF  ++++ ++  TS+ISG+   G   +A  IF   R
Sbjct: 207 DVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMR 266

Query: 242 KT-VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           KT V  D +   +++  Y+  +E       +H  +IK     +  L  +L  +YAKCG +
Sbjct: 267 KTNVRPDWIALVSVLRAYT-DVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHV 325

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
             AR  F+ ++  ++  W +MI GY KNG   +A+ELF +M+   ++P+ +T   +++AC
Sbjct: 326 MVARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAAC 385

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
              G ++  R + E +      +  +     ++D   + GS++ A +FV +     +  V
Sbjct: 386 AQIGSLELARWMDEYISMS-EFRNDVIVNTSLIDTYAKCGSVDMA-RFVFDRIPDKDVVV 443

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W+A++    LH     + I  + + +   +     +V L      +G  +   +L  +M+
Sbjct: 444 WSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMR 503

Query: 481 LRGV 484
             G+
Sbjct: 504 DYGI 507



 Score = 95.9 bits (237), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 161/370 (43%), Gaps = 40/370 (10%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +L S L+ Y + +   +G  IH  + K G++   ++ I L  L+ KCG +  A   F+++
Sbjct: 276 ALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVMVARLFFNQV 335

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
              +L  +N MI+GY+KNG  EE++ L R + S   RPD  T +  + A     S     
Sbjct: 336 ENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACAQIGS----- 390

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
             L R +   I   + + D ++ T+L+D+Y K G    AR VFD + +K+V+  ++M+ G
Sbjct: 391 LELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWSAMMVG 450

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
           +   G              + I++++AM +      +     L   C+            
Sbjct: 451 YGLHG-----------QGRESIILFHAMRQAGVSPNDVTFVGLLTACK------------ 487

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
            S LV+        D   R+ D+  +     +  ++D  G+ G+ ++A      M    +
Sbjct: 488 NSGLVE-----EGWDLFHRMRDYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMP---I 539

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQA 405
           +P    +   LSAC     V  G     + ER +S+ P    HY  + +L   +   +  
Sbjct: 540 EPGVSVWGALLSACKIHRHVTLGE---YAAERLFSLDPYNTGHYVQLSNLYASSCLWDCV 596

Query: 406 LKFVLEMPEK 415
            K  + M EK
Sbjct: 597 AKVRVLMREK 606


>gi|147859209|emb|CAN83551.1| hypothetical protein VITISV_001173 [Vitis vinifera]
          Length = 728

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 160/443 (36%), Positives = 249/443 (56%), Gaps = 41/443 (9%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           +L  +++ G L+ A ++FDE+P+R   +++ MIA Y ++G  EE+L L  K+V  G +P+
Sbjct: 256 ILDAYVETGDLREARRIFDEMPERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPN 315

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
              F+  L A    R+      + G  +H  + K  +  D  + ++L+D Y K GK    
Sbjct: 316 ISCFACTLSALASLRA-----LSAGINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDG 370

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY------- 258
           R+VFD++LEKNV+C  SM+ G+   G +E+ EE+F    EK+   +  +J GY       
Sbjct: 371 RLVFDLILEKNVVCWNSMVGGYSINGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCE 430

Query: 259 ---------------------------SISIETARKALEVHCQLIKNVFFEDVKLGSALV 291
                                        SI +  K + VH ++IK     D+ +G+AL 
Sbjct: 431 KVLEVFNTLLVSGQTPNKSTFSSVLCACASIASLDKGMNVHGKIIKLGIQYDIFVGTALT 490

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNY 350
           DMYAKCG I  +++VF+ M +KN  +WT MI G  ++G   ++L LF  M+    V PN 
Sbjct: 491 DMYAKCGDIGSSKQVFERMPEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNE 550

Query: 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410
           +  L  L AC H GLVDKG   F SME+ Y +KPK +HY C+VDLL R+G L +A +F+ 
Sbjct: 551 LMLLSVLFACSHCGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIR 610

Query: 411 EMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
            +P +P ++ WAALLS C+ + D ++A   A ++++L  N+  G YV LSN  A+AG+W 
Sbjct: 611 TIPFQPEANAWAALLSGCKKYKDEKIAERTAKKLWQLAENNSAG-YVLLSNIYASAGRWI 669

Query: 471 SVTELREKMKLRGVLKDTGCSWV 493
            V+ +R+ M+ +G+ K  GCSWV
Sbjct: 670 DVSNIRKLMREKGLKKSGGCSWV 692



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/349 (25%), Positives = 146/349 (41%), Gaps = 78/349 (22%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           A +  S L+ + N      G  +HAH+ KTG      I+IKLLIL+L C       Q+  
Sbjct: 21  AQTCVSLLKKFSNQGLITQGNVLHAHLIKTGFSSQRYIAIKLLILYLNCRKFAEIDQIVK 80

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP 164
           E     L   N MI+ Y++ G      +LV+  +   E P+                   
Sbjct: 81  EFDGSDLVVSNCMISAYVQWG------NLVQARLLFDEMPE------------------- 115

Query: 165 LPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
             RN                 +V ++AL+   +K G+   +   F+    +NV+  T+ I
Sbjct: 116 --RN-----------------EVSWSALISGLMKYGRVEESMWYFERNPFQNVVSWTAAI 156

Query: 225 SGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIE----------GYSISIETARKALE 270
           SGF+  G   +A ++F + +E  +    V + +++           G SI     +   E
Sbjct: 157 SGFVRNGLNFEALKLFFRLLESGVRPNDVTFTSVVRACGELGDFGLGMSILGLVVKAGFE 216

Query: 271 VH----------------CQLIKNVF----FEDVKLGSALVDMYAKCGKIDDARRVFDHM 310
            +                  L + VF      DV   +A++D Y + G + +ARR+FD M
Sbjct: 217 HYLSVSNSLITLSLRMGEIDLARRVFDRMEKRDVVSWTAILDAYVETGDLREARRIFDEM 276

Query: 311 QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
            ++N  +W++MI  Y ++G   +AL+LF  M +   +PN   F   LSA
Sbjct: 277 PERNEISWSAMIARYSQSGYAEEALKLFSKMVQEGFKPNISCFACTLSA 325



 Score = 93.2 bits (230), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 135/305 (44%), Gaps = 56/305 (18%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD------------------- 104
           G+ IH H+TK G+  +  I   L+ L+ KCG       +FD                   
Sbjct: 335 GINIHGHVTKIGIDKDVFIGSSLIDLYCKCGKPDDGRLVFDLILEKNVVCWNSMVGGYSI 394

Query: 105 ------------ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
                        +P++   ++  +JAGYL+N Q E+ L +   L+ SG+ P+  TFS +
Sbjct: 395 NGRLEEXEELFELIPEKNDXSWGTIJAGYLENEQCEKVLEVFNTLLVSGQTPNKSTFSSV 454

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L A   C S   L +  G  VH +I+K  ++ D  + TAL D Y K G    ++ VF+ M
Sbjct: 455 LCA---CASIASLDK--GMNVHGKIIKLGIQYDIFVGTALTDMYAKCGDIGSSKQVFERM 509

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVH 272
            EKN I  T MI G    GF  ++  +F +      V  N ++    +S+  A      H
Sbjct: 510 PEKNEISWTVMIQGLAESGFAVESLILFEEMERTSEVAPNELM---LLSVLFACS----H 562

Query: 273 CQLI-KNVFF----EDV-------KLGSALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWT 319
           C L+ K +++    E V       K  + +VD+ ++ G++ +A      +  Q     W 
Sbjct: 563 CGLVDKGLWYFNSMEKVYGIKPKGKHYTCVVDLLSRSGRLYEAEEFIRTIPFQPEANAWA 622

Query: 320 SMIDG 324
           +++ G
Sbjct: 623 ALLSG 627


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  276 bits (707), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 153/434 (35%), Positives = 254/434 (58%), Gaps = 12/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKC---GALKYAGQMFDELPQRTLSAYNYMIAG 120
           G ++H+   + G++ ++ +S  L+ ++ K     +L  A ++F+ +P+  + A+  +++G
Sbjct: 274 GQQLHSLALRLGLESDSCVSCGLVDMYAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSG 333

Query: 121 YLKNG-QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           Y++ G Q  + + L  K+++ G RP+  T+S +LKA     +N+   ++ GR +H   +K
Sbjct: 334 YVQRGSQDNQVMILFCKMLNEGIRPNHITYSSMLKAC----ANLG-DQDSGRQIHTHCVK 388

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
            ++   +V+  ALV  Y + G    AR  FD + EKN++  +  + G       +D + I
Sbjct: 389 SNLADLNVVGNALVSMYAESGSIEEARHAFDQLYEKNMVSFSGNLDGDGRSNTYQDYQ-I 447

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            R  +      + ++I   + S+    K   +H   +K  F  D  +G++LV MY++CG 
Sbjct: 448 ERMELGISTFTFGSLISA-AASVGMLTKGQRLHALSLKAGFGSDRAIGNSLVSMYSRCGY 506

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           + DA +VFD M   NV +WTSMI G  K+G   +ALELF  M    V+PN VT++  LSA
Sbjct: 507 LVDACQVFDEMNDHNVISWTSMISGLAKHGYAARALELFHDMIAAGVKPNDVTYIAVLSA 566

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C HAGLV +G+E F  M++ + + P+MEHYACMVDLLGR+G +E AL F+ EMP + ++ 
Sbjct: 567 CSHAGLVKEGKEHFRMMQKHHGLIPRMEHYACMVDLLGRSGLVEDALDFINEMPCQVDAL 626

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW  LL +C+ H+++++  IAAN + +L   D P  YV LSN  A AG WD V  +R  M
Sbjct: 627 VWKTLLGACKTHNNMDIGEIAANHVIQLEPQD-PAPYVLLSNLYAEAGLWDQVARIRSLM 685

Query: 480 KLRGVLKDTGCSWV 493
           + + ++K+ G SW+
Sbjct: 686 RDKNLMKEKGLSWM 699



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/365 (27%), Positives = 177/365 (48%), Gaps = 19/365 (5%)

Query: 64  GLKIHAHITKTG--VKPNTNISIKLLILHLKCGALKYAGQMFDELP--QRTLSAYNYMIA 119
           G  +  H+ +TG  ++ +  ++  LL L+ KC A+  A  +FD +P   R L ++  M +
Sbjct: 66  GRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMAS 125

Query: 120 GYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
              +NG   E+L L  + +  G  P+ +T   +  A+  C ++  L    G  V   + K
Sbjct: 126 CLSRNGAEAEALRLFGETLEEGLLPNAFT---LCAATQACFAS-ELFHLAGGAVLGLVFK 181

Query: 180 CDVKADDV-LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
                 DV +  AL+D + K G     R VFD + E+ V+  T +I+ +   G+ ++A E
Sbjct: 182 LGFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVE 241

Query: 239 IFRKTVEK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
           +F   +E     D    ++M+   +  + + R   ++H   ++     D  +   LVDMY
Sbjct: 242 LFLDMLENGFQPDQYTLSSMLSACT-ELGSFRLGQQLHSLALRLGLESDSCVSCGLVDMY 300

Query: 295 AKC---GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP-NQALELFCMMQECCVQPNY 350
           AK      + +AR VF+ M + NV  WT+++ GY + G+  NQ + LFC M    ++PN+
Sbjct: 301 AKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNH 360

Query: 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410
           +T+   L AC + G  D GR+I     +       +   A +V +   +GS+E+A     
Sbjct: 361 ITYSSMLKACANLGDQDSGRQIHTHCVKSNLADLNVVGNA-LVSMYAESGSIEEARHAFD 419

Query: 411 EMPEK 415
           ++ EK
Sbjct: 420 QLYEK 424



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 186/363 (51%), Gaps = 25/363 (6%)

Query: 79  NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLV 138
           + ++   L+ +  K G L    ++FD L +RT+  +  +I  Y ++G  +E++ L   ++
Sbjct: 188 DVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDML 247

Query: 139 SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVK 198
            +G +PD YT S +L A T   S       LG+ +H+  L+  +++D  +   LVD Y K
Sbjct: 248 ENGFQPDQYTLSSMLSACTELGS-----FRLGQQLHSLALRLGLESDSCVSCGLVDMYAK 302

Query: 199 ---GGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI-FRKTVEKDI----VV 250
              G     AR VF+ M + NV+  T+++SG++ +G  ++   I F K + + I    + 
Sbjct: 303 SHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHIT 362

Query: 251 YNAMIEG-YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309
           Y++M++   ++  + + + +  HC  +K+   +   +G+ALV MYA+ G I++AR  FD 
Sbjct: 363 YSSMLKACANLGDQDSGRQIHTHC--VKSNLADLNVVGNALVSMYAESGSIEEARHAFDQ 420

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKG 369
           + +KN+ +++  +DG G++ N  Q  ++  M     +  +  TF   +SA    G++ KG
Sbjct: 421 LYEKNMVSFSGNLDGDGRS-NTYQDYQIERME----LGISTFTFGSLISAAASVGMLTKG 475

Query: 370 REIFE-SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
           + +   S++  +     + +   +V +  R G L  A +   EM +  N   W +++S  
Sbjct: 476 QRLHALSLKAGFGSDRAIGN--SLVSMYSRCGYLVDACQVFDEMNDH-NVISWTSMISGL 532

Query: 429 RLH 431
             H
Sbjct: 533 AKH 535



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 134/276 (48%), Gaps = 24/276 (8%)

Query: 168 NLGRMVHAQILKCD--VKADDVLYTALVDSYVKGGKTSYARIVFDMMLE--KNVICSTSM 223
           +LGR +   +L+    ++ D V+  +L+  Y K    + AR VFD M    ++++  T+M
Sbjct: 64  HLGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAM 123

Query: 224 ISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE- 282
            S     G   +A  +F +T+E+ ++  NA     +     A +   +    +  + F+ 
Sbjct: 124 ASCLSRNGAEAEALRLFGETLEEGLLP-NAFTLCAATQACFASELFHLAGGAVLGLVFKL 182

Query: 283 -----DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
                DV +G AL+DM+AK G +   RRVFD + ++ V  WT +I  Y ++G  ++A+EL
Sbjct: 183 GFWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVEL 242

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC----MV 393
           F  M E   QP+  T    LSAC   G    G+++        +++  +E  +C    +V
Sbjct: 243 FLDMLENGFQPDQYTLSSMLSACTELGSFRLGQQL-----HSLALRLGLESDSCVSCGLV 297

Query: 394 DLLGRA---GSLEQALKFVLEMPEKPNSDVWAALLS 426
           D+  ++    SL  A +    MP K N   W ALLS
Sbjct: 298 DMYAKSHNGQSLHNAREVFNRMP-KHNVMAWTALLS 332


>gi|359484390|ref|XP_002281719.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Vitis vinifera]
          Length = 662

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 159/468 (33%), Positives = 265/468 (56%), Gaps = 45/468 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G K++  + K+G++ +T +   L+ ++ + G ++   Q+F+E+PQR + ++N +I+GY+K
Sbjct: 151 GEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVK 210

Query: 124 NGQVEESLSLVRKLVS-SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
             + E+++ + R++   S  RP+  T    L A    +  + L + + R V  Q L   +
Sbjct: 211 CRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKM-LELGKEIHRYVREQ-LGFTI 268

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           K  +    ALVD Y K G  S AR +F+ M  K VIC TSM+SG+++ G +++A E+F +
Sbjct: 269 KIGN----ALVDMYCKCGHLSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFER 324

Query: 243 TVEKDIVVYNAMIEGY----------------------------------SISIETARKA 268
           +  +D+V++ AMI GY                                     + T  + 
Sbjct: 325 SPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQG 384

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
             +H  + +N    D  +G+AL++MYAKCG I+ +  +F+ +++K+  +WTS+I G   N
Sbjct: 385 KWIHGYIDENKIMIDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIICGLAMN 444

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G  ++ALELF  M +  V+P+ +TF+G LSAC H GLV++GR+ F SM   Y ++PK+EH
Sbjct: 445 GKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEH 504

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDV---WAALLSSCRLHDDVEMANIAANEIF 445
           Y C++DLLGRAG L++A + + + P   N  +   + ALLS+CR H +VEM    A  + 
Sbjct: 505 YGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERVAKRLV 564

Query: 446 KLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            + + D    +  L+N  A+A +W+ VT++R KMK  GV K  GCS V
Sbjct: 565 GIESGD-SSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSV 611



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 185/397 (46%), Gaps = 45/397 (11%)

Query: 66  KIHAHITKTGVKPNTNISIKLLI--LHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           +I   I +TG   + +   K ++       G L YA ++F+ +    L  YN +I  + K
Sbjct: 50  QIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGLFIYNLVIKAFTK 109

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG   +++ L R+L   G  PD +T+  + KA  C           G  V+  ++K  ++
Sbjct: 110 NGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGE-----VREGEKVYGFVVKSGLE 164

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +  +L+D Y + G+    R VF+ M +++V+    +ISG++     EDA ++FR+ 
Sbjct: 165 FDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRRM 224

Query: 244 VEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            ++  +  N      ++S   A K L    E+H  + + + F  +K+G+ALVDMY KCG 
Sbjct: 225 QQQSSLRPNEATVVSTLSACIALKMLELGKEIHRYVREQLGF-TIKIGNALVDMYCKCGH 283

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM------------------- 340
           +  AR +F+ M  K V  WTSM+ GY   G  ++A ELF                     
Sbjct: 284 LSIAREIFNDMPIKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGYVQF 343

Query: 341 ------------MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
                       MQ   V P+  T +  L+ C   G +++G+ I   ++ +  M   +  
Sbjct: 344 NRFDDAVALFREMQIKRVSPDRFTLVALLTGCAQLGTLEQGKWIHGYIDENKIMIDAVVG 403

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
            A ++++  + G +E++L+    + EK  +  W +++
Sbjct: 404 TA-LIEMYAKCGFIEKSLEIFNGLKEKDTAS-WTSII 438



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/312 (24%), Positives = 144/312 (46%), Gaps = 27/312 (8%)

Query: 200 GKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK----DIVVYNAMI 255
           G   YA  +F+ +    +     +I  F   G    A  +FR+  E+    D   Y  + 
Sbjct: 80  GNLHYAERIFNYIDIPGLFIYNLVIKAFTKNGSFRKAVLLFRQLREEGLSPDNFTYPFVF 139

Query: 256 EGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
           +     +   R+  +V+  ++K+    D  + ++L+DMYA+ G++ + R+VF+ M Q++V
Sbjct: 140 KAIG-CLGEVREGEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDV 198

Query: 316 FTWTSMIDGYGKNGNPNQALELF-CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374
            +W  +I GY K      A+++F  M Q+  ++PN  T +  LSAC    +++ G+EI  
Sbjct: 199 VSWNVLISGYVKCRRYEDAVDVFRRMQQQSSLRPNEATVVSTLSACIALKMLELGKEIHR 258

Query: 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS---SCRLH 431
            +        K+ +   +VD+  + G L  A +   +MP K     W +++S   +C   
Sbjct: 259 YVREQLGFTIKIGN--ALVDMYCKCGHLSIAREIFNDMPIK-TVICWTSMVSGYVNCGQL 315

Query: 432 DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD---- 487
           D+       A E+F+ +       + A+ N      ++D    L  +M+++ V  D    
Sbjct: 316 DE-------ARELFERSPVRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTL 368

Query: 488 ----TGCSWVGT 495
               TGC+ +GT
Sbjct: 369 VALLTGCAQLGT 380


>gi|115484703|ref|NP_001067495.1| Os11g0213500 [Oryza sativa Japonica Group]
 gi|77549336|gb|ABA92133.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|113644717|dbj|BAF27858.1| Os11g0213500 [Oryza sativa Japonica Group]
 gi|125576589|gb|EAZ17811.1| hypothetical protein OsJ_33354 [Oryza sativa Japonica Group]
          Length = 470

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 148/435 (34%), Positives = 254/435 (58%), Gaps = 18/435 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G + HA     G  P+  +   L++++ +CG  + A ++FD +   ++ AYN ++A    
Sbjct: 25  GEQAHARAVVGGWLPDATLETDLVLMYCRCGERRRARRVFDGMRAPSMHAYNVLLAA--- 81

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRN-LGRMVHAQILKCDV 182
                +++ +  +L++SG RPDGY+   +++A         LP   LG ++H   ++  +
Sbjct: 82  -SPPRDAMEVFSRLLASGLRPDGYSVPAVVRACA------ELPDAVLGGVIHGFAVRLGL 134

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             + V+  AL+D Y K G    A  VFD M E++ +    M++G+   G   +  EIF +
Sbjct: 135 MGNVVVAAALLDMYAKAGFLDDAVRVFDEMTERDAVVWNCMVAGYARAGRAVETFEIFSR 194

Query: 243 TVEKDIVVYNAMIEGYSISIETAR-----KALEVHCQLIKNVFFE-DVKLGSALVDMYAK 296
              + + + N +    S+    A+     K  E+H ++++ + F+ D+ +G+AL++MYAK
Sbjct: 195 AQVEAVNMVNGLQAVPSVLNICAKEGELMKGREIHGRMVRCLAFDSDIAVGNALINMYAK 254

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG+++ ++ VF  MQQ++V +W++MI  Y  +G   QAL+++  M    V+PN++TF   
Sbjct: 255 CGRVNVSQAVFSGMQQRDVVSWSTMIHSYSIHGKGEQALKVYMEMLSEGVKPNWITFTSV 314

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           LS+C H+GLV +GR+IFESM + + + P  EHYACMVDLLGRAG++E+A+  + +MP +P
Sbjct: 315 LSSCSHSGLVTEGRKIFESMTKVHGVHPAAEHYACMVDLLGRAGAIEEAVGLIRKMPMEP 374

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
            + VW ALLS+C +H++V++  IAA  +F+L        YV L     A G+ D V  LR
Sbjct: 375 CASVWGALLSACAMHNNVDVGEIAAFRLFELEEGSASN-YVTLCGIYDAVGQSDGVAGLR 433

Query: 477 EKMKLRGVLKDTGCS 491
            +M+  G++K  GCS
Sbjct: 434 SRMRELGMVKTPGCS 448



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 154/343 (44%), Gaps = 25/343 (7%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           S+P+ ++          G  IH    + G+  N  ++  LL ++ K G L  A ++FDE+
Sbjct: 105 SVPAVVRACAELPDAVLGGVIHGFAVRLGLMGNVVVAAALLDMYAKAGFLDDAVRVFDEM 164

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLV-RKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
            +R    +N M+AGY + G+  E+  +  R  V +    +G     +      C     L
Sbjct: 165 TERDAVVWNCMVAGYARAGRAVETFEIFSRAQVEAVNMVNG--LQAVPSVLNICAKEGEL 222

Query: 166 PRNLGRMVHAQILKC-DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
            +  GR +H ++++C    +D  +  AL++ Y K G+ + ++ VF  M +++V+  ++MI
Sbjct: 223 MK--GREIHGRMVRCLAFDSDIAVGNALINMYAKCGRVNVSQAVFSGMQQRDVVSWSTMI 280

Query: 225 SGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSIS--IETARKALEVHCQLIKN 278
             +   G  E A     E+  + V+ + + + +++   S S  +   RK  E   ++  +
Sbjct: 281 HSYSIHGKGEQALKVYMEMLSEGVKPNWITFTSVLSSCSHSGLVTEGRKIFESMTKV--H 338

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT-WTSMIDGYGKNGNPN----Q 333
                 +  + +VD+  + G I++A  +   M  +   + W +++     + N +     
Sbjct: 339 GVHPAAEHYACMVDLLGRAGAIEEAVGLIRKMPMEPCASVWGALLSACAMHNNVDVGEIA 398

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGH----AGLVDKGREI 372
           A  LF + +      NYVT  G   A G     AGL  + RE+
Sbjct: 399 AFRLFELEEGS--ASNYVTLCGIYDAVGQSDGVAGLRSRMREL 439



 Score = 45.1 bits (105), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 6/162 (3%)

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
           R   + H + +   +  D  L + LV MY +CG+   ARRVFD M+  ++  +  ++   
Sbjct: 23  RPGEQAHARAVVGGWLPDATLETDLVLMYCRCGERRRARRVFDGMRAPSMHAYNVLL--- 79

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
                P  A+E+F  +    ++P+  +    + AC        G  I     R   +   
Sbjct: 80  -AASPPRDAMEVFSRLLASGLRPDGYSVPAVVRACAELPDAVLGGVIHGFAVR-LGLMGN 137

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
           +   A ++D+  +AG L+ A++   EM E+ ++ VW  +++ 
Sbjct: 138 VVVAAALLDMYAKAGFLDDAVRVFDEMTER-DAVVWNCMVAG 178


>gi|356565531|ref|XP_003550993.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Glycine max]
          Length = 628

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 164/478 (34%), Positives = 257/478 (53%), Gaps = 55/478 (11%)

Query: 57  NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNY 116
           NS +  + L+IHA + + G+  +  ++ KL   +   G L ++  +F   P   +  + +
Sbjct: 32  NSKSTHHLLQIHAALLRRGLHHHPILNFKLQRSYASLGHLHHSVTLFHRTPNPNVFLWTH 91

Query: 117 MIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
           +I  +        +LS   ++++   +P+ +T S +LKA T          +  R VH+ 
Sbjct: 92  IINAHAHFDLFHHALSYYSQMLTHPIQPNAFTLSSLLKACTL---------HPARAVHSH 142

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
            +K  + +   + T LVD+Y +GG  + A+ +FD M E++++  T+M++ +   G + +A
Sbjct: 143 AIKFGLSSHLYVSTGLVDAYARGGDVASAQKLFDAMPERSLVSYTAMLTCYAKHGMLPEA 202

Query: 237 EEIFRKTVEKDIVVYNAMIEGYSI------SIETARK----------------------- 267
             +F     KD+V +N MI+GY+       ++   RK                       
Sbjct: 203 RVLFEGMGMKDVVCWNVMIDGYAQHGCPNEALVFFRKMMMMMGGNGNGKVRPNEITVVAV 262

Query: 268 --------ALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
                   ALE    VH  +  N    +V++G+ALVDMY KCG ++DAR+VFD M+ K+V
Sbjct: 263 LSSCGQVGALECGKWVHSYVENNGIKVNVRVGTALVDMYCKCGSLEDARKVFDVMEGKDV 322

Query: 316 FTWTSMIDGYGKNGNPNQALELFCMMQECC--VQPNYVTFLGALSACGHAGLVDKGREIF 373
             W SMI GYG +G  ++AL+LF  M  CC  V+P+ +TF+  L+AC HAGLV KG E+F
Sbjct: 323 VAWNSMIMGYGIHGFSDEALQLFHEM--CCIGVKPSDITFVAVLTACAHAGLVSKGWEVF 380

Query: 374 ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDD 433
           +SM+  Y M+PK+EHY CMV+LLGRAG +++A   V  M  +P+  +W  LL +CR+H +
Sbjct: 381 DSMKDGYGMEPKVEHYGCMVNLLGRAGRMQEAYDLVRSMEVEPDPVLWGTLLWACRIHSN 440

Query: 434 VEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
           V +    A EI   N     G YV LSN  AAA  W  V ++R  MK  GV K+ GCS
Sbjct: 441 VSLGEEIA-EILVSNGLASSGTYVLLSNMYAAARNWVGVAKVRSMMKGSGVEKEPGCS 497


>gi|296081956|emb|CBI20961.3| unnamed protein product [Vitis vinifera]
          Length = 553

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 157/438 (35%), Positives = 258/438 (58%), Gaps = 20/438 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           KIHAHI K  +  ++ +  K++ +    G  +YA  +F  +       YN MI  Y  N 
Sbjct: 77  KIHAHIVKFSLSQSSFLVTKMVDVCNHYGETEYANLLFKGVADPNAFLYNAMIRAYKHNK 136

Query: 126 QVEESLSLVRKLVSS--GERP---DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
               ++++ ++++ +  GE P   D +TF  ++K+         +  +LG+ VH  + K 
Sbjct: 137 VYVLAITVYKQMLGNPHGENPIFPDKFTFPFVVKSCAGL-----MCYDLGKQVHGHVFKF 191

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN--VICSTSMISGFMSQGFVEDAEE 238
             K++ V+  +LV+ YVK      A  VF+ M E++  +   T+++SG+   G   DA E
Sbjct: 192 GQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGYARIGCYADALE 251

Query: 239 IFRKTVEKDIVVYNAMIEGYSISIETAR-KALE----VHCQLIKNVFFEDVKLGSALVDM 293
            FR+   + + +    I   S+  + A+  ALE    +H    K  F  ++ + +AL++M
Sbjct: 252 FFRRM--QMVGIEPDEISLVSVLPDCAQLGALELGKWIHIYADKAGFLRNICVCNALIEM 309

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           YAKCG ID  RR+FD M++++V +W++MI G   +G   +A+ELF  MQ+  ++P+ +TF
Sbjct: 310 YAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQEMQKAKIEPSIITF 369

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           +G L+AC HAGL+++G   FESM+RDY+++P +EHY C+V+LLG +G L+QAL+ V +MP
Sbjct: 370 VGLLTACAHAGLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGLSGRLDQALELVKKMP 429

Query: 414 EKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473
            KP+S +W +LLSSCR H ++++A IA   + +L   D  G YV LSN  A  GKWD V+
Sbjct: 430 RKPDSPIWGSLLSSCRSHGNLKIAVIAMEHLLELEPAD-TGNYVLLSNLYADLGKWDGVS 488

Query: 474 ELREKMKLRGVLKDTGCS 491
            +R+ M+ + + K  GCS
Sbjct: 489 RMRKLMRSKSMKKTPGCS 506



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 132/275 (48%), Gaps = 14/275 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQR--TLSAYNYMIAGY 121
           G ++H H+ K G K NT +   L+ +++KC +L  A ++F+E+ +R  T+ ++  +++GY
Sbjct: 181 GKQVHGHVFKFGQKSNTVVENSLVEMYVKCDSLDDAHRVFEEMTERDATIFSWTAIVSGY 240

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            + G   ++L   R++   G  PD  +   +L    C +        LG+ +H    K  
Sbjct: 241 ARIGCYADALEFFRRMQMVGIEPDEISLVSVL--PDCAQLGA---LELGKWIHIYADKAG 295

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
              +  +  AL++ Y K G     R +FD M E++VI  ++MI G  + G   +A E+F+
Sbjct: 296 FLRNICVCNALIEMYAKCGSIDQGRRLFDQMKERDVISWSTMIVGLANHGRAREAIELFQ 355

Query: 242 K----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE-DVKLGSALVDMYAK 296
           +     +E  I+ +  ++   + +     + L     + ++   E  V+    LV++   
Sbjct: 356 EMQKAKIEPSIITFVGLLTACAHA-GLLNEGLRYFESMKRDYNIEPGVEHYGCLVNLLGL 414

Query: 297 CGKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNGN 330
            G++D A  +   M +K +   W S++     +GN
Sbjct: 415 SGRLDQALELVKKMPRKPDSPIWGSLLSSCRSHGN 449


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 153/434 (35%), Positives = 250/434 (57%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH +  ++G     NIS  L+ ++ KCG+L+ A Q+FD + +R + ++N MI  Y++
Sbjct: 255 GKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQ 314

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N   +E++ + +K++  G +P   +   ++ A   C     L R  GR +H   ++  + 
Sbjct: 315 NENPKEAMLIFQKMLDEGVKPTDVS---VMGALHACADLGDLER--GRFIHKLSVELGLD 369

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR-- 241
            +  +  +L+  Y K  +   A  +F  +  + ++   +MI GF   G   DA   F   
Sbjct: 370 RNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQM 429

Query: 242 --KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
             +TV+ D   Y ++I   +  +     A  +H  ++++   ++V + +ALVDMYAKCG 
Sbjct: 430 RSRTVKPDTFTYVSVITAIA-ELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGA 488

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I  AR +FD M +++V TW +MIDGYG +G    ALELF  MQ+  ++PN VTFL  +SA
Sbjct: 489 IMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISA 548

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H+GLV+ G + F  M+ +YS++  M+HY  MVDLLGRAG L +A  F+++MP KP  +
Sbjct: 549 CSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVN 608

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           V+ A+L +C++H +V  A  AA  +F+LN +D  G +V L+N   AA  W+ V ++R  M
Sbjct: 609 VYGAMLGACQIHKNVNFAEKAAERLFELNPDD-GGYHVLLANIYRAASMWEKVGQVRVSM 667

Query: 480 KLRGVLKDTGCSWV 493
             +G+ K  GCS V
Sbjct: 668 LRQGLRKTPGCSMV 681



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 90/309 (29%), Positives = 160/309 (51%), Gaps = 16/309 (5%)

Query: 71  ITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEES 130
           + K G+        KL+ L  + G++  A ++F+ +  +    Y+ M+ G+ K   ++++
Sbjct: 60  VFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKA 119

Query: 131 LSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT 190
           L    ++      P  Y F+ +LK    C     L   +G+ +H  ++K     D    T
Sbjct: 120 LQFFVRMRYDDVEPVVYNFTYLLKV---CGDEAEL--RVGKEIHGLLVKSGFSLDLFAMT 174

Query: 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV 250
            L + Y K  + + AR VFD M E++++   ++++G+   G    A E+ +   E+++  
Sbjct: 175 GLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKP 234

Query: 251 YNAMIEGYSISIETARKAL-------EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
               I    +S+  A  AL       E+H   +++ F   V + +ALVDMYAKCG ++ A
Sbjct: 235 SFITI----VSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETA 290

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
           R++FD M ++NV +W SMID Y +N NP +A+ +F  M +  V+P  V+ +GAL AC   
Sbjct: 291 RQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADL 350

Query: 364 GLVDKGREI 372
           G +++GR I
Sbjct: 351 GDLERGRFI 359



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 182/376 (48%), Gaps = 20/376 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH  + K+G   +      L  ++ KC  +  A ++FD +P+R L ++N ++AGY +
Sbjct: 154 GKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQ 213

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG    +L +V+ +     +P   T   +L A +  R       ++G+ +H   ++    
Sbjct: 214 NGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALR-----LISVGKEIHGYAMRSGFD 268

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +   + TALVD Y K G    AR +FD MLE+NV+   SMI  ++     ++A  IF+K 
Sbjct: 269 SLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKM 328

Query: 244 VEK-----DIVVYNAMIEGYSIS-IETAR--KALEVHCQLIKNVFFEDVKLGSALVDMYA 295
           +++     D+ V  A+     +  +E  R    L V   L +N     V + ++L+ MY 
Sbjct: 329 LDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRN-----VSVVNSLISMYC 383

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KC ++D A  +F  +Q + + +W +MI G+ +NG P  AL  F  M+   V+P+  T++ 
Sbjct: 384 KCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVS 443

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            ++A     +    + I   + R   +   +     +VD+  + G++  A + + +M  +
Sbjct: 444 VITAIAELSITHHAKWIHGVVMRS-CLDKNVFVTTALVDMYAKCGAIMIA-RLIFDMMSE 501

Query: 416 PNSDVWAALLSSCRLH 431
            +   W A++     H
Sbjct: 502 RHVTTWNAMIDGYGTH 517



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 71/267 (26%), Positives = 130/267 (48%), Gaps = 19/267 (7%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           R +   + K  +  +    T LV  + + G    A  VF+ +  K  +   +M+ GF   
Sbjct: 54  RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKV 113

Query: 231 GFVEDAEEIFRKTVEKDI--VVYNAMIEGYSISI----ETARKALEVHCQLIKNVFFEDV 284
             ++ A + F +    D+  VVYN     Y + +       R   E+H  L+K+ F  D+
Sbjct: 114 SDLDKALQFFVRMRYDDVEPVVYNFT---YLLKVCGDEAELRVGKEIHGLLVKSGFSLDL 170

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
              + L +MYAKC ++++AR+VFD M ++++ +W +++ GY +NG    ALE+   M E 
Sbjct: 171 FAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEE 230

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA----CMVDLLGRAG 400
            ++P+++T +  L A     L+  G+EI       Y+M+   +        +VD+  + G
Sbjct: 231 NLKPSFITIVSVLPAVSALRLISVGKEI-----HGYAMRSGFDSLVNISTALVDMYAKCG 285

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSS 427
           SLE A +    M E+ N   W +++ +
Sbjct: 286 SLETARQLFDGMLER-NVVSWNSMIDA 311


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 158/434 (36%), Positives = 252/434 (58%), Gaps = 10/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+  H+++   G+  +  +   L+ ++   G    A  +FD +  R+L ++N MI+GY++
Sbjct: 265 GMCAHSYVLALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQ 324

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG + ES +L R+LV SG   D  T   +++    C     L    GR++H+ I++ +++
Sbjct: 325 NGMIPESYALFRRLVQSGSGFDSGTLVSLIRG---CSQTSDLEN--GRILHSCIIRKELE 379

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +  VL TA+VD Y K G    A IVF  M +KNVI  T+M+ G    G+ EDA ++F + 
Sbjct: 380 SHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQM 439

Query: 244 VEKDIVVYNAMIEGY---SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
            E+ +   +  +         + +  K   VH   I++ +  D  + SAL+DMYAKCGKI
Sbjct: 440 QEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKI 499

Query: 301 DDARRVFDH-MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
             A ++F++    K+V    SMI GYG +G+   AL ++  M E  ++PN  TF+  L+A
Sbjct: 500 HSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTA 559

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H+GLV++G+ +F SMERD+ ++P+ +HYAC+VDL  RAG LE+A + V +MP +P++D
Sbjct: 560 CSHSGLVEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTD 619

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           V  ALLS CR H +  M    A+ +  L+  +  G YV LSN  A A KW+SV  +R  M
Sbjct: 620 VLEALLSGCRTHKNTNMGIQIADRLISLDYLN-SGIYVMLSNIYAEARKWESVNYIRGLM 678

Query: 480 KLRGVLKDTGCSWV 493
           +++G+ K  G S +
Sbjct: 679 RMQGMKKIPGYSLI 692



 Score =  169 bits (429), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 125/463 (26%), Positives = 217/463 (46%), Gaps = 55/463 (11%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++I     + G   +  +   ++   +K G L  A ++FD +P++ +  +N +I GY++
Sbjct: 164 GMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQ 223

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G   ES+ +  +++  G RP   T + +LKA  C +S +   + +G   H+ +L   + 
Sbjct: 224 KGLFWESIQMFLEMIGGGLRPSPVTMANLLKA--CGQSGL---KKVGMCAHSYVLALGMG 278

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  + T+LVD Y   G T  A +VFD M  +++I   +MISG++  G + ++  +FR+ 
Sbjct: 279 NDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRL 338

Query: 244 VEK----DIVVYNAMIEGYSIS--IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           V+     D     ++I G S +  +E  R    +H  +I+      + L +A+VDMY+KC
Sbjct: 339 VQSGSGFDSGTLVSLIRGCSQTSDLENGRI---LHSCIIRKELESHLVLSTAIVDMYSKC 395

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G I  A  VF  M +KNV TWT+M+ G  +NG    AL+LFC MQE  V  N VT +  +
Sbjct: 396 GAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLV 455

Query: 358 SACGHAGLVDKGREIFESMERD-YSMKPKMEHYACMVDLLGRAGSLEQALKF-------- 408
             C H G + KGR +     R  Y+    +   + ++D+  + G +  A K         
Sbjct: 456 HCCAHLGSLTKGRTVHAHFIRHGYAFDAVIT--SALIDMYAKCGKIHSAEKLFNNEFHLK 513

Query: 409 ---------------------------VLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441
                                      ++E   KPN   + +LL++C  H  +     A 
Sbjct: 514 DVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACS-HSGLVEEGKAL 572

Query: 442 NEIFKLNANDRP--GAYVALSNTLAAAGKWDSVTELREKMKLR 482
               + + + RP    Y  L +  + AG+ +   EL ++M  +
Sbjct: 573 FHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQ 615



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 182/389 (46%), Gaps = 21/389 (5%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           A S+ S+L H   S+T  +   IHA I K  V   + ++ KL+ ++   G L +A  +FD
Sbjct: 45  APSVFSSLLHQF-SNTLIHVKSIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNVFD 103

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP 164
           +      +  N MIAG+L+N Q  E   L R + S     + YT    LKA T       
Sbjct: 104 QCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACT------- 156

Query: 165 LPRNLGRMVHAQILKCDVKADDVLY----TALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
               L   V  +I++  V+    L+    +++V+  VK G  + A+ VFD M EK+V+C 
Sbjct: 157 --DLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCW 214

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLI 276
            S+I G++ +G   ++ ++F + +   +    V    +++    S    +  +  H  ++
Sbjct: 215 NSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQS-GLKKVGMCAHSYVL 273

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
                 DV + ++LVDMY+  G    A  VFD M  +++ +W +MI GY +NG   ++  
Sbjct: 274 ALGMGNDVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYA 333

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           LF  + +     +  T +  +  C     ++ GR +   + R   ++  +     +VD+ 
Sbjct: 334 LFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRK-ELESHLVLSTAIVDMY 392

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALL 425
            + G+++QA   V     K N   W A+L
Sbjct: 393 SKCGAIKQA-TIVFGRMGKKNVITWTAML 420


>gi|345505216|gb|AEN99832.1| chlororespiratory reduction 4 [Capsella bursa-pastoris]
          Length = 617

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 157/472 (33%), Positives = 249/472 (52%), Gaps = 60/472 (12%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           GL+IH  + KTG+  +  +   L+ L+LKCG L +A Q+FD +PQR   ++N MI GY+K
Sbjct: 144 GLQIHGILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYVK 203

Query: 124 NGQVEESLSL-------VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
            G +E +  L       V+ L+S      GY       A T     V +  NL     A+
Sbjct: 204 RGLIESARELFDLMPREVKNLISWNSIISGY-------AQTS--DGVDIASNL----FAE 250

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
           + + D+    + + +++D YVK G+   A+ +FD M  ++V+   +MI G+   GFV  A
Sbjct: 251 MPEKDL----ISWNSMIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQA 306

Query: 237 EEIFRKTVEKDIVVYNAMIEGY---------------------------------SISIE 263
           + +F +   +D+V YN+M+ GY                                 S   +
Sbjct: 307 KTLFDQMPHRDVVSYNSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQ 366

Query: 264 TAR--KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
             R  KA+++H  +++  FF   KLG AL+DMY+KCG I  A  VF+ ++ K++  W +M
Sbjct: 367 LGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAM 426

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           I G   +G    A ++   ++   ++P+ +TF+G L+AC H+GLV +G   FE M R + 
Sbjct: 427 IGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHK 486

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441
           ++P+++HY CMVD+L R+GS+E A   + EMP +PN  +W   L++C  H + E   +  
Sbjct: 487 IEPRLQHYGCMVDILSRSGSIELAKNLIQEMPIEPNDVIWRTFLTACNHHKEFETGELVG 546

Query: 442 NEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             +  L A   P +YV LSN  A+ GKW  V  +R  MK R + K  GCSW+
Sbjct: 547 KHLI-LQAGYNPSSYVLLSNMYASFGKWKDVRRIRTMMKERKIEKIPGCSWI 597



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 117/481 (24%), Positives = 215/481 (44%), Gaps = 73/481 (15%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSA------------ 113
           KIHA +  TG+  N+N+S + ++L        Y  + F  L  R                
Sbjct: 33  KIHARLITTGLIKNSNLSTR-IVLAFAASPRPYLAE-FARLVFREYHVCSSSPGGEVEDP 90

Query: 114 --YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR 171
             +N +I  +      +++L L   ++ +G   D ++ S++LKA  C R         G 
Sbjct: 91  FLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKA--CSRLGFV---KGGL 145

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
            +H  + K  + +D  L   L+  Y+K G   +AR +FD M +++ +   SMI G++ +G
Sbjct: 146 QIHGILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSFNSMIDGYVKRG 205

Query: 232 FVEDAEEIFRKTVE--KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSA 289
            +E A E+F       K+++ +N++I GY+         +++   L   +  +D+   ++
Sbjct: 206 LIESARELFDLMPREVKNLISWNSIISGYA----QTSDGVDIASNLFAEMPEKDLISWNS 261

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ---------------- 333
           ++D Y K G+I+DA+ +FD M +++V TW +MIDGY K G  +Q                
Sbjct: 262 MIDGYVKHGRIEDAKDLFDAMPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVSY 321

Query: 334 ---------------ALELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREI-FESM 376
                          ALE+F  M +E  + P+  T +  LSA    G + K  ++    +
Sbjct: 322 NSMMAGYVQNKYHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIV 381

Query: 377 ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEM 436
           E+ + +  K+     ++D+  + GS++ A+  V E  E  + D W A++    +H   E 
Sbjct: 382 EKQFFLGGKLG--VALIDMYSKCGSIQHAM-LVFEGIENKSIDHWNAMIGGLAIHGLGES 438

Query: 437 ANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE-------LREKMKLRGVLKDTG 489
           A     +I + +       +V + N  + +G    V E       +R K K+   L+  G
Sbjct: 439 AFDMLLQIERRSIKPDDITFVGVLNACSHSGL---VKEGLLCFELMRRKHKIEPRLQHYG 495

Query: 490 C 490
           C
Sbjct: 496 C 496



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/165 (23%), Positives = 71/165 (43%), Gaps = 13/165 (7%)

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK---IDDARRVFDHM--------- 310
           +T+    ++H +LI     ++  L + +V  +A   +    + AR VF            
Sbjct: 26  KTSEDVSKIHARLITTGLIKNSNLSTRIVLAFAASPRPYLAEFARLVFREYHVCSSSPGG 85

Query: 311 QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR 370
           + ++ F W ++I  +    +P QAL LFC+M E  V  +  +    L AC   G V  G 
Sbjct: 86  EVEDPFLWNAVIKSHSHGKDPKQALLLFCLMLENGVSVDKFSMSLVLKACSRLGFVKGGL 145

Query: 371 EIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
           +I   + R   +   +    C++ L  + G L  A +    MP++
Sbjct: 146 QI-HGILRKTGLCSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQR 189


>gi|449461943|ref|XP_004148701.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
 gi|449517215|ref|XP_004165641.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Cucumis sativus]
          Length = 706

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 145/432 (33%), Positives = 251/432 (58%), Gaps = 19/432 (4%)

Query: 70  HITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEE 129
           ++   G +P+  +  ++L++H+KCG +  A ++FDE+P R   ++  +I+GY+ +G   E
Sbjct: 157 YMVDNGFEPDQYMRNRVLLMHVKCGMMIDACRLFDEMPARNAVSWGTIISGYVDSGNYVE 216

Query: 130 SLSLV----RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           +  L      +    G R    TF+ +++AS       P     GR +H+  +K  +  D
Sbjct: 217 AFRLFILMREEFYDCGPR----TFATMIRASAGLEIIFP-----GRQLHSCAIKAGLGQD 267

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT-- 243
             +  AL+D Y K G    A  VFD M +K ++   S+I+G+   G+ E+A +++ +   
Sbjct: 268 IFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGYALHGYSEEALDLYHEMRD 327

Query: 244 --VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
             V+ D   ++ +I   S     AR A +VH  L++N F  DV   +ALVD Y+K GK+D
Sbjct: 328 SGVKMDHFTFSIIIRICSRLASVAR-AKQVHASLVRNGFGLDVVANTALVDFYSKWGKVD 386

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           DAR VFD M  +N+ +W ++I GYG +G+  +A+++F  M    + PN+VTFL  LSAC 
Sbjct: 387 DARHVFDRMSCRNIISWNALIAGYGNHGHGEEAIDMFEKMLREGMMPNHVTFLAVLSACS 446

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
            +GL ++G EIF+SM RD+ +KP+  H+ACM++LLGR G L++A   + + P +P +++W
Sbjct: 447 ISGLFERGWEIFQSMTRDHKVKPRAMHFACMIELLGREGLLDEAYALIRKAPFQPTANMW 506

Query: 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
           AALL +CR+H ++E+   AA +++ +   ++   Y+ L N   ++GK     ++ + +K 
Sbjct: 507 AALLRACRVHGNLELGKFAAEKLYGMEP-EKLSNYIVLLNIYNSSGKLKEAADVFQTLKR 565

Query: 482 RGVLKDTGCSWV 493
           +G+     CSW+
Sbjct: 566 KGLRMLPACSWI 577



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 94/349 (26%), Positives = 172/349 (49%), Gaps = 47/349 (13%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           F G ++H+   K G+  +  +S  L+ ++ KCG+L+ A  +FDE+P +T+  +N +IAGY
Sbjct: 250 FPGRQLHSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVGWNSIIAGY 309

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
             +G  EE+L L  ++  SG + D +TFS+I++    C     + R   + VHA +++  
Sbjct: 310 ALHGYSEEALDLYHEMRDSGVKMDHFTFSIIIRI---CSRLASVAR--AKQVHASLVRNG 364

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
              D V  TALVD Y K GK   AR VFD M  +N+I   ++I+G+ + G  E+A ++F 
Sbjct: 365 FGLDVVANTALVDFYSKWGKVDDARHVFDRMSCRNIISWNALIAGYGNHGHGEEAIDMFE 424

Query: 242 KTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           K + + +    V + A++   SIS     +  E+   + +                    
Sbjct: 425 KMLREGMMPNHVTFLAVLSACSIS-GLFERGWEIFQSMTR-------------------- 463

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
                     DH  +     +  MI+  G+ G  ++A   + ++++   QP    +   L
Sbjct: 464 ----------DHKVKPRAMHFACMIELLGREGLLDEA---YALIRKAPFQPTANMWAALL 510

Query: 358 SACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQA 405
            AC   G ++ G+    + E+ Y M+P K+ +Y  ++++   +G L++A
Sbjct: 511 RACRVHGNLELGK---FAAEKLYGMEPEKLSNYIVLLNIYNSSGKLKEA 556



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 90/187 (48%), Gaps = 3/187 (1%)

Query: 251 YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM 310
           Y+A+I    I +++ R    +   ++ N F  D  + + ++ M+ KCG + DA R+FD M
Sbjct: 135 YDALINA-CIGLKSIRGVKRLCNYMVDNGFEPDQYMRNRVLLMHVKCGMMIDACRLFDEM 193

Query: 311 QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR 370
             +N  +W ++I GY  +GN  +A  LF +M+E        TF   + A     ++  GR
Sbjct: 194 PARNAVSWGTIISGYVDSGNYVEAFRLFILMREEFYDCGPRTFATMIRASAGLEIIFPGR 253

Query: 371 EIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRL 430
           ++  S      +   +     ++D+  + GSLE A     EMP+K     W ++++   L
Sbjct: 254 QL-HSCAIKAGLGQDIFVSCALIDMYSKCGSLEDAHCVFDEMPDKTIVG-WNSIIAGYAL 311

Query: 431 HDDVEMA 437
           H   E A
Sbjct: 312 HGYSEEA 318


>gi|147770672|emb|CAN62482.1| hypothetical protein VITISV_010810 [Vitis vinifera]
          Length = 704

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 143/431 (33%), Positives = 245/431 (56%), Gaps = 9/431 (2%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           K+  ++  +G+ P+  +  ++L++H+KCG +  A ++FDE+P++ + ++N +I G +  G
Sbjct: 152 KVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAG 211

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              E+  L   +           F  +++AS             GR +H+  LK  V  D
Sbjct: 212 DYFEAFRLFLMMWQXFSDAGSRMFVTMIRASAGLGLIFA-----GRQLHSCSLKTGVGGD 266

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             +  AL+D Y K G    A+ VFD M EK  +   S+I+G+   G+ E+A  ++ +  +
Sbjct: 267 VFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRD 326

Query: 246 KDIVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
             + + N   ++I      + +   A + H  L+++ F  D+   +ALVD+Y+K G+I+D
Sbjct: 327 SGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIED 386

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           A+ VFD M  KNV +W ++I GYG +G   +A+E+F  M    + PN+VTFL  LSAC +
Sbjct: 387 AKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSY 446

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
           +GL D+G EIFESM RD+ +KP+  HYACM++LLGR G L++A   + + P KP  ++WA
Sbjct: 447 SGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWA 506

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
           ALL++CR+H + E+   AA +++ +   ++   YV L N    +G+ +    + + +K R
Sbjct: 507 ALLTACRVHKNFELGKFAAEKLYGMGP-EKLSNYVVLLNIYNXSGRLEEAAAVIQTLKRR 565

Query: 483 GVLKDTGCSWV 493
           G+     CSW+
Sbjct: 566 GLRMLPACSWI 576



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 173/350 (49%), Gaps = 49/350 (14%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           F G ++H+   KTGV  +  ++  L+ ++ KCG+++ A  +FD++P++T   +N +IAGY
Sbjct: 249 FAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGY 308

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
             +G  EE+LS+  ++  SG + D +TFS+I++    C     L     +  HA +++  
Sbjct: 309 ALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIR---ICARLASLEH--AKQAHAGLVRHG 363

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
              D V  TALVD Y K G+   A+ VFDMM  KNVI   ++I+G+ + G   +A E+F 
Sbjct: 364 FGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFE 423

Query: 242 KTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           + + + +    V + A++   S S  + R                    G  + +  ++ 
Sbjct: 424 RMLHEGMVPNHVTFLAVLSACSYSGLSDR--------------------GWEIFESMSR- 462

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
                     DH  +     +  MI+  G+ G  ++A   F ++++   +P    +   L
Sbjct: 463 ----------DHKIKPRAMHYACMIELLGREGLLDEA---FALIKDAPFKPTVNMWAALL 509

Query: 358 SACGHAGLVDKGREIFE-SMERDYSMKP-KMEHYACMVDLLGRAGSLEQA 405
           +AC     V K  E+ + + E+ Y M P K+ +Y  ++++   +G LE+A
Sbjct: 510 TAC----RVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNXSGRLEEA 555



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 11/195 (5%)

Query: 247 DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRV 306
           D   Y+A++    I +++ R   +V   +I +    D  L + ++ M+ KCG + DARR+
Sbjct: 130 DSETYDALVSA-CIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRL 188

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           FD M +KN+ +W ++I G    G+  +A  LF MM +         F+  + A    GL+
Sbjct: 189 FDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQXFSDAGSRMFVTMIRASAGLGLI 248

Query: 367 DKGREIFESMERDYSMKPKME---HYAC-MVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
             GR++        S+K  +      AC ++D+  + GS+E A     +MPEK     W 
Sbjct: 249 FAGRQLHSC-----SLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVG-WN 302

Query: 423 ALLSSCRLHDDVEMA 437
           ++++   LH   E A
Sbjct: 303 SIIAGYALHGYSEEA 317


>gi|242045096|ref|XP_002460419.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
 gi|241923796|gb|EER96940.1| hypothetical protein SORBIDRAFT_02g027830 [Sorghum bicolor]
          Length = 635

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 150/439 (34%), Positives = 251/439 (57%), Gaps = 16/439 (3%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           IH+H++++ +  +  +   L+ ++ KCGA+  A  +FD +P R + ++ Y+I GY +N  
Sbjct: 84  IHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIPTRDVVSWTYLITGYAQNDM 143

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
             E+L L+  ++ +  RP G+TF+  LKA+  C       R +G  +HA  +K ++  D 
Sbjct: 144 PAEALGLLPDMLRARFRPSGFTFTSFLKAAGACGG-----RGIGEQMHALAVKYNLDEDV 198

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
            + +AL+D Y +  +   A  VFD +  KN +   ++I+GF  +G   D E    K  E 
Sbjct: 199 YVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKG---DGETTLMKFAEM 255

Query: 247 DIVVYNAMIEGYSISIETARK--ALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
               + A    YS       +  ALE    VH  +IK+       + + ++ MYAK G +
Sbjct: 256 QRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKLTAFVANTILGMYAKSGSM 315

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
            DAR+VFD + Q+++ TW +M+  + + G   +A+  F  +++  +Q N +TFL  L+AC
Sbjct: 316 VDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAHFEEIRKYGIQLNQITFLSVLTAC 375

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            H GLV +G++ F+ M +DY+++P+++HY   VDLLGRAG L++AL FV +MP +P + V
Sbjct: 376 SHGGLVKEGKQYFDMM-KDYNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAV 434

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W ALL +CR+H + ++   AA+ +F+L+  D  G  V L N  A+ G+WD    +R+ MK
Sbjct: 435 WGALLGACRMHKNAKIGQYAADHVFELDPED-TGPPVLLYNIYASTGQWDDAARVRKMMK 493

Query: 481 LRGVLKDTGCSWVGTESGL 499
             GV K+  CSWV  E+ +
Sbjct: 494 ATGVKKEPACSWVEIENSV 512



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 65/264 (24%), Positives = 124/264 (46%), Gaps = 11/264 (4%)

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
            R +H+ + +  +  D  L  +L+  Y K G  S AR VFD +  ++V+  T +I+G+  
Sbjct: 81  ARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDGIPTRDVVSWTYLITGYAQ 140

Query: 230 QGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
                +A     ++ R         + + ++    +        ++H   +K    EDV 
Sbjct: 141 NDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAG-ACGGRGIGEQMHALAVKYNLDEDVY 199

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           +GSAL+DMYA+C ++D A RVFD +  KN  +W ++I G+ + G+    L  F  MQ   
Sbjct: 200 VGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFARKGDGETTLMKFAEMQRNG 259

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC--MVDLLGRAGSLE 403
               + T+    SA    G +++GR +   M +      K+  +    ++ +  ++GS+ 
Sbjct: 260 FGATHFTYSSVFSALARIGALEQGRWVHAHMIKS---GQKLTAFVANTILGMYAKSGSMV 316

Query: 404 QALKFVLEMPEKPNSDVWAALLSS 427
            A K V +  ++ +   W  +L++
Sbjct: 317 DARK-VFDRVDQRDLVTWNTMLTA 339



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 112/247 (45%), Gaps = 14/247 (5%)

Query: 250 VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309
           VY+++I   + S   A  A  +H  L ++    D  L ++L+ MY KCG + DAR VFD 
Sbjct: 64  VYHSIITACAQSKNLA-GARAIHSHLSRSRLAGDGFLLNSLIHMYCKCGAVSDARHVFDG 122

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKG 369
           +  ++V +WT +I GY +N  P +AL L   M     +P+  TF   L A G  G    G
Sbjct: 123 IPTRDVVSWTYLITGYAQNDMPAEALGLLPDMLRARFRPSGFTFTSFLKAAGACG----G 178

Query: 370 REIFESMER---DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           R I E M      Y++   +   + ++D+  R   ++ A++ V +  +  N   W AL++
Sbjct: 179 RGIGEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIR-VFDWLDSKNEVSWNALIA 237

Query: 427 SCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA-----AAGKWDSVTELREKMKL 481
                 D E   +   E+ +         Y ++ + LA       G+W     ++   KL
Sbjct: 238 GFARKGDGETTLMKFAEMQRNGFGATHFTYSSVFSALARIGALEQGRWVHAHMIKSGQKL 297

Query: 482 RGVLKDT 488
              + +T
Sbjct: 298 TAFVANT 304



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 125/305 (40%), Gaps = 52/305 (17%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA   K  +  +  +   LL ++ +C  +  A ++FD L  +   ++N +IAG+ +
Sbjct: 182 GEQMHALAVKYNLDEDVYVGSALLDMYARCQQMDMAIRVFDWLDSKNEVSWNALIAGFAR 241

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR----NLGRMVHAQILK 179
            G  E +L    ++  +G     +T+S +  A         L R      GR VHA ++K
Sbjct: 242 KGDGETTLMKFAEMQRNGFGATHFTYSSVFSA---------LARIGALEQGRWVHAHMIK 292

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
              K    +   ++  Y K G    AR VFD + +++++   +M++ F   G  ++A   
Sbjct: 293 SGQKLTAFVANTILGMYAKSGSMVDARKVFDRVDQRDLVTWNTMLTAFAQYGLGKEAVAH 352

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           F +            I  Y I             QL +  F        +++   +  G 
Sbjct: 353 FEE------------IRKYGI-------------QLNQITFL-------SVLTACSHGGL 380

Query: 300 IDDARRVFDHMQQKNVFT----WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           + + ++ FD M+  NV      + S +D  G+ G   +AL     M    ++P    +  
Sbjct: 381 VKEGKQYFDMMKDYNVEPEIDHYVSFVDLLGRAGLLKEALIFVFKMP---MEPTAAVWGA 437

Query: 356 ALSAC 360
            L AC
Sbjct: 438 LLGAC 442


>gi|240255401|ref|NP_189042.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332643322|gb|AEE76843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 665

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 157/513 (30%), Positives = 275/513 (53%), Gaps = 49/513 (9%)

Query: 29  FPPKL-------QNYDSLSNPLTATSLPSALQH-----------------YINSDTPFY- 63
           FPP+L       +  +SL  P++  S   +L+                  YI +D  FY 
Sbjct: 5   FPPRLLSQLKLSRRLNSLPAPVSEDSEDESLKFPSNDLLLRTSSNDLEGSYIPADRRFYN 64

Query: 64  --------------GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQR 109
                         G  +HAHI ++  + +  +   LL ++ KCG+L+ A ++F+++PQR
Sbjct: 65  TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQR 124

Query: 110 TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL 169
               +  +I+GY ++ +  ++L    +++  G  P+ +T S ++KA+   R         
Sbjct: 125 DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGC-----C 179

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           G  +H   +KC   ++  + +AL+D Y + G    A++VFD +  +N +   ++I+G   
Sbjct: 180 GHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHAR 239

Query: 230 QGFVEDAEEIFRKTVEKDIVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
           +   E A E+F+  +       +   A + G   S     +   VH  +IK+        
Sbjct: 240 RSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFA 299

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
           G+ L+DMYAK G I DAR++FD + +++V +W S++  Y ++G   +A+  F  M+   +
Sbjct: 300 GNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGI 359

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
           +PN ++FL  L+AC H+GL+D+G   +E M++D  + P+  HY  +VDLLGRAG L +AL
Sbjct: 360 RPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRAL 418

Query: 407 KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
           +F+ EMP +P + +W ALL++CR+H + E+   AA  +F+L+ +D PG +V L N  A+ 
Sbjct: 419 RFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDD-PGPHVILYNIYASG 477

Query: 467 GKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           G+W+    +R+KMK  GV K+  CSWV  E+ +
Sbjct: 478 GRWNDAARVRKKMKESGVKKEPACSWVEIENAI 510


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  276 bits (705), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 156/458 (34%), Positives = 268/458 (58%), Gaps = 15/458 (3%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           N +T T+  S+    ++ +    G++IH  +  +G   ++ IS  L+ ++ KCG L+ A 
Sbjct: 206 NSVTITTAISSCARLLDLNR---GMEIHEELINSGFLLDSFISSALVDMYGKCGHLEMAI 262

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           ++F+++P++T+ A+N MI+GY   G     + L +++ + G +P   T S ++    C R
Sbjct: 263 EVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIM--VCSR 320

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           S   L    G+ VH   ++  +++D  + ++L+D Y K GK   A  +F ++ +  V+  
Sbjct: 321 SARLLE---GKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSW 377

Query: 221 TSMISGFMSQGFVEDAEEIF---RKT-VEKDIVVYNAMIEGYSISIETARKALEVHCQLI 276
             MISG++++G + +A  +F   RK+ VE D + + +++   S  +    K  E+H  +I
Sbjct: 378 NVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACS-QLAALEKGEEIHNLII 436

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           +     +  +  AL+DMYAKCG +D+A  VF  + ++++ +WTSMI  YG +G    ALE
Sbjct: 437 EKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVALE 496

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           LF  M +  ++P+ VTFL  LSACGHAGLVD+G   F  M   Y + P++EHY+C++DLL
Sbjct: 497 LFAEMLQSNMKPDRVTFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHYSCLIDLL 556

Query: 397 GRAGSLEQALKFVLEMPE-KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA 455
           GRAG L +A + + + PE + + ++ + L S+CRLH ++++    A  +   + +D    
Sbjct: 557 GRAGRLHEAYEILQQNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDD-SST 615

Query: 456 YVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           Y+ LSN  A+A KWD V  +R KMK  G+ K+ GCSW+
Sbjct: 616 YILLSNMYASAHKWDEVRVVRSKMKELGLKKNPGCSWI 653



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 117/462 (25%), Positives = 221/462 (47%), Gaps = 21/462 (4%)

Query: 16  HNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTG 75
           + ++Y  V   + F  KL +Y  L     + + PS L+          G  IH  + KTG
Sbjct: 80  YTKNYMYVEALELFE-KLLHYPYLKPD--SYTYPSVLKACGGLYKYVLGKMIHTCLVKTG 136

Query: 76  VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVR 135
           +  +  +   L+ ++ KC A + A  +F+E+P++ ++ +N +I+ Y ++G  +E+L    
Sbjct: 137 LMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFG 196

Query: 136 KLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDS 195
            +   G  P+  T +  +  S+C R    L  N G  +H +++      D  + +ALVD 
Sbjct: 197 LMRRFGFEPNSVTITTAI--SSCAR---LLDLNRGMEIHEELINSGFLLDSFISSALVDM 251

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMI 255
           Y K G    A  VF+ M +K V+   SMISG+  +G      ++F++   + +      +
Sbjct: 252 YGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTL 311

Query: 256 EGYSISIETARKALE---VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ 312
               +    + + LE   VH   I+N    DV + S+L+D+Y KCGK++ A  +F  + +
Sbjct: 312 SSLIMVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAENIFKLIPK 371

Query: 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
             V +W  MI GY   G   +AL LF  M++  V+P+ +TF   L+AC     ++KG EI
Sbjct: 372 SKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKGEEI 431

Query: 373 FESMERDYSMKPKMEH----YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
                 +  ++ K+++       ++D+  + G++++A      +P K +   W +++++ 
Sbjct: 432 -----HNLIIEKKLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP-KRDLVSWTSMITAY 485

Query: 429 RLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
             H    +A     E+ + N       ++A+ +    AG  D
Sbjct: 486 GSHGQAYVALELFAEMLQSNMKPDRVTFLAILSACGHAGLVD 527



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 188/385 (48%), Gaps = 22/385 (5%)

Query: 52  LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRT- 110
           L+  +NS +   G  IH  +   G++ +  +   L+ L+L C    +A  +FD +     
Sbjct: 10  LRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNMENPCE 69

Query: 111 LSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNL 169
           +S +N ++AGY KN    E+L L  KL+     +PD YT+  +LKA       V     L
Sbjct: 70  ISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYV-----L 124

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           G+M+H  ++K  +  D V+ ++LV  Y K      A  +F+ M EK+V C  ++IS +  
Sbjct: 125 GKMIHTCLVKTGLMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQ 184

Query: 230 QGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
            G  ++A E F    R   E + V     I   +  ++  R  +E+H +LI + F  D  
Sbjct: 185 SGNFKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNR-GMEIHEELINSGFLLDSF 243

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           + SALVDMY KCG ++ A  VF+ M +K V  W SMI GYG  G+    ++LF  M    
Sbjct: 244 ISSALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEG 303

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH----YACMVDLLGRAGS 401
           V+P   T    +  C  +  + +G+ +       Y+++ +++      + ++DL  + G 
Sbjct: 304 VKPTLTTLSSLIMVCSRSARLLEGKFV-----HGYTIRNRIQSDVFINSSLMDLYFKCGK 358

Query: 402 LEQALKFVLEMPEKPNSDVWAALLS 426
           +E A + + ++  K     W  ++S
Sbjct: 359 VELA-ENIFKLIPKSKVVSWNVMIS 382



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/292 (27%), Positives = 148/292 (50%), Gaps = 21/292 (7%)

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           G+++H +++   ++ D  L   L++ Y+      +A+ VFD M      C  S+ +G M+
Sbjct: 22  GKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNMENP---CEISLWNGLMA 78

Query: 230 QGFVE-----DAEEIFRKTV-----EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
            G+ +     +A E+F K +     + D   Y ++++      +     + +H  L+K  
Sbjct: 79  -GYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKM-IHTCLVKTG 136

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
              D+ +GS+LV MYAKC   + A  +F+ M +K+V  W ++I  Y ++GN  +ALE F 
Sbjct: 137 LMMDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFG 196

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
           +M+    +PN VT   A+S+C     +++G EI E +     +       A +VD+ G+ 
Sbjct: 197 LMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSFISSA-LVDMYGKC 255

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451
           G LE A++   +MP+K     W +++S   L  D    +I+  ++FK   N+
Sbjct: 256 GHLEMAIEVFEQMPKK-TVVAWNSMISGYGLKGD----SISCIQLFKRMYNE 302


>gi|345505222|gb|AEN99835.1| chlororespiratory reduction 4, partial [Lepidium sativum]
          Length = 597

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 154/472 (32%), Positives = 246/472 (52%), Gaps = 60/472 (12%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+ IH  + KTG+  +  +   L+ L+LKCG L Y+ Q+FD +PQR   +YN MI GY+K
Sbjct: 124 GMXIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGYSRQVFDRMPQRDSVSYNSMIDGYVK 183

Query: 124 NGQVEESLSL-------VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
            G +E +  L       ++ L+S      GY       A T    N+           ++
Sbjct: 184 CGLIESARELFDLMPKEMKNLISWNCLISGY-------AQTSDGVNIA----------SK 226

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
           +     + D + + +++D YVK G+   A+ +FD+M  ++VI   +MI G+   GF+  A
Sbjct: 227 LFSEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDVMPRRDVITWATMIDGYAKLGFIHQA 286

Query: 237 EEIFRKTVEKDIVVYNAMIEGYS------------ISIETAR------------------ 266
           + +F +   +D+V YN+M+ GY             I +E                     
Sbjct: 287 KTLFDQIPHRDVVAYNSMMAGYVQNKYHMEALELFIKMEKESHLSPDETTLVIVLSAIAQ 346

Query: 267 -----KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
                KA+++H  ++K  FF   KLG AL+DMY+KCG I  A  VF  ++ KN+  W ++
Sbjct: 347 LGRLSKAMDMHFYIVKKQFFIGGKLGVALIDMYSKCGSIQHAMLVFKGLENKNIDHWNAI 406

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           I G   +G    A ++   ++   ++P+ +TF+G L+AC H+GLV +G   FE M R + 
Sbjct: 407 IGGLAIHGLGGPAFDMLLQIERLSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHK 466

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441
           ++P+++HY CMVD+L R+GS+E A   + +MP +PN  +W   L++C  H + EM  + A
Sbjct: 467 IEPRLQHYGCMVDILSRSGSIELAKILIEKMPIEPNDVIWRTFLTACSHHKEFEMGELVA 526

Query: 442 NEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             +  L A   P +YV LSN  A+ G W  V  +R  MK R + K  GCSW+
Sbjct: 527 KHLI-LQAGYNPSSYVLLSNMYASCGMWKDVRRVRTMMKERKIQKIPGCSWI 577



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 119/479 (24%), Positives = 217/479 (45%), Gaps = 70/479 (14%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQ----MFDELPQRTLS--------A 113
           KIHA +  TGV  N+N++ + ++L       +Y  +    +F+E    +L          
Sbjct: 14  KIHARLITTGVIKNSNLTTR-IVLAFASSRRQYLAEFARCVFEEHHVYSLPYGETEDPFL 72

Query: 114 YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMV 173
           +N +I  +        SL L   ++ +G   D ++ S++LKA  C R         G  +
Sbjct: 73  WNAVIKSHSHGTDPRRSLFLFCLMLENGVSVDKFSLSLVLKA--CSRLGFV---KAGMXI 127

Query: 174 HAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFV 233
           H  + K  + +D  L   L+  Y+K G   Y+R VFD M +++ +   SMI G++  G +
Sbjct: 128 HGFLRKTGLWSDLFLQNCLIGLYLKCGCLGYSRQVFDRMPQRDSVSYNSMIDGYVKCGLI 187

Query: 234 EDAEEIFRKTVE--KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALV 291
           E A E+F    +  K+++ +N +I GY+         + +  +L   +  +D+   ++++
Sbjct: 188 ESARELFDLMPKEMKNLISWNCLISGYA----QTSDGVNIASKLFSEMPEKDLISWNSMI 243

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ------------------ 333
           D Y K G+I+DA+ +FD M +++V TW +MIDGY K G  +Q                  
Sbjct: 244 DGYVKHGRIEDAKDLFDVMPRRDVITWATMIDGYAKLGFIHQAKTLFDQIPHRDVVAYNS 303

Query: 334 -------------ALELFCMMQ-ECCVQPNYVTFLGALSACGHAGLVDKGREI-FESMER 378
                        ALELF  M+ E  + P+  T +  LSA    G + K  ++ F  +++
Sbjct: 304 MMAGYVQNKYHMEALELFIKMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHFYIVKK 363

Query: 379 DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMAN 438
            + +  K+     ++D+  + GS++ A+  V +  E  N D W A++    +H     A 
Sbjct: 364 QFFIGGKLG--VALIDMYSKCGSIQHAM-LVFKGLENKNIDHWNAIIGGLAIHGLGGPAF 420

Query: 439 IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE-------LREKMKLRGVLKDTGC 490
               +I +L+       ++ + N  + +G    V E       +R K K+   L+  GC
Sbjct: 421 DMLLQIERLSIKPDDITFIGVLNACSHSG---LVKEGLLCFELMRRKHKIEPRLQHYGC 476



 Score = 46.6 bits (109), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 38/166 (22%), Positives = 72/166 (43%), Gaps = 12/166 (7%)

Query: 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK---IDDARRVFD--------H 309
           S +TA    ++H +LI     ++  L + +V  +A   +    + AR VF+        +
Sbjct: 5   SCKTADDVNKIHARLITTGVIKNSNLTTRIVLAFASSRRQYLAEFARCVFEEHHVYSLPY 64

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKG 369
            + ++ F W ++I  +    +P ++L LFC+M E  V  +  +    L AC   G V  G
Sbjct: 65  GETEDPFLWNAVIKSHSHGTDPRRSLFLFCLMLENGVSVDKFSLSLVLKACSRLGFVKAG 124

Query: 370 REIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
             I     R   +   +    C++ L  + G L  + +    MP++
Sbjct: 125 MXI-HGFLRKTGLWSDLFLQNCLIGLYLKCGCLGYSRQVFDRMPQR 169


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 165/464 (35%), Positives = 252/464 (54%), Gaps = 41/464 (8%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++ A+I + G+K N  +   L+ +++KCGA+  A ++FDE   R L  YN +++ Y +
Sbjct: 251 GERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYAR 310

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G   E+L+++ +++  G RPD  T   +L A +     V L    G++ H  +++  ++
Sbjct: 311 QGLAREALAILDEMLQQGPRPDRVT---MLSAISASAQLVDL--FYGKVCHGYVIRNGLE 365

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
             D +   ++D Y+K GK   A  VFD+M  K V+   S+ +GF+  G VE A E+F + 
Sbjct: 366 GWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQI 425

Query: 244 VEKDIVVYNAMIEG------YSISIETARK----------------------------AL 269
            E++ V +N MI G      +  +IE  R+                            A 
Sbjct: 426 PERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAK 485

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
            VH  + KN    D++L +ALVDM+A+CG    A +VF+ M +++V  WT+ I      G
Sbjct: 486 WVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEG 545

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
           N   A  LF  M    V+P+ V F+  L+AC H G V++G  IF  ME D+ + P++EHY
Sbjct: 546 NGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLME-DHGISPQIEHY 604

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
            CMVDLLGRAG L +A   +  MP +PN  VW +LL++CR+H +VEMA  AA  I +L A
Sbjct: 605 GCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINEL-A 663

Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             R G +V LSN  A+AGKW  V  +R  ++ +GV K  G S V
Sbjct: 664 PQRAGVHVLLSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSV 707



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 103/417 (24%), Positives = 200/417 (47%), Gaps = 43/417 (10%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+++H  + K G++ +  I   L+  + +CG + +  ++F+ + +R + ++  +I GY +
Sbjct: 150 GIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYAR 209

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
             + +E++SL  ++V +G RP   T   ++ A    R       ++G  V A I +  +K
Sbjct: 210 GDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRD-----LDMGERVCAYIGELGLK 264

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEI 239
            + V+  ALVD Y+K G    A+ +FD  +++N++   +++S +  QG   +A    +E+
Sbjct: 265 LNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEM 324

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            ++    D V   + I   +  ++     +  H  +I+N       +G+ ++DMY KCGK
Sbjct: 325 LQQGPRPDRVTMLSAISASAQLVDLFYGKV-CHGYVIRNGLEGWDSIGNVIIDMYMKCGK 383

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP-------NQ------------------- 333
            + A RVFD M  K V +W S+  G+ +NG+        NQ                   
Sbjct: 384 PEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQK 443

Query: 334 -----ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
                A+ELF  MQ   ++ + VT +G  SACG+ G  +  + +   +E++  +   M  
Sbjct: 444 SLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKN-GIPCDMRL 502

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIF 445
              +VD+  R G  + A++   +M E+  S  W A + +  +  + E A    N++ 
Sbjct: 503 NTALVDMFARCGDPQSAMQVFNKMTERDVS-AWTAAIGTMAMEGNGEGATGLFNQML 558



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 111/454 (24%), Positives = 201/454 (44%), Gaps = 40/454 (8%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGA---LKYAGQMFDELPQRT-----LSAYNYM 117
           ++H  ITK G+    +   KL+    +  +   L YA + F+   +       L   N +
Sbjct: 43  QLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKEDVRSDDALFMLNSL 102

Query: 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQI 177
           I GY   G   E++ L  +++  G  P+ YTF  +L   T   +        G  VH  +
Sbjct: 103 IRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCTKIAAFCE-----GIQVHGSV 157

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
           +K  ++ D  +   L+  Y + G   +   VF+ M E+NV+  TS+I G+      ++A 
Sbjct: 158 VKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAV 217

Query: 238 EIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG----SALVDM 293
            +F + VE  I   +  +    IS     + L++  ++   +    +KL     +ALVDM
Sbjct: 218 SLFFEMVEAGIRPSSVTMVCV-ISACAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDM 276

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           Y KCG ID A+R+FD    +N+  + +++  Y + G   +AL +   M +   +P+ VT 
Sbjct: 277 YMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLAREALAILDEMLQQGPRPDRVTM 336

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY----ACMVDLLGRAGSLEQALKFV 409
           L A+SA   A LVD     +  +   Y ++  +E +      ++D+  + G  E A + V
Sbjct: 337 LSAISA--SAQLVDL---FYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACR-V 390

Query: 410 LEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKW 469
            ++        W +L +    + DVE A    N+I + NA      +  + + L     +
Sbjct: 391 FDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAV----FWNTMISGLVQKSLF 446

Query: 470 DSVTELREKMKLRGVLKD--------TGCSWVGT 495
           +   EL  +M+  G+  D        + C ++G 
Sbjct: 447 EDAIELFREMQGEGIKADRVTMMGIASACGYLGA 480



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 67/270 (24%), Positives = 127/270 (47%), Gaps = 19/270 (7%)

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK---TSYARIVFDMMLE 214
           CC++      N  + +H QI K  +       T LV++  +        YAR  F++  E
Sbjct: 34  CCKT-----LNQLKQLHCQITKNGLDQIPSTLTKLVNAGAEIASPESLDYARKAFELFKE 88

Query: 215 K-----NVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETA 265
                  +    S+I G+ S G   +A  ++ +     V  +   +  ++ G +  I   
Sbjct: 89  DVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFVLSGCT-KIAAF 147

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
            + ++VH  ++K    EDV + + L+  YA+CG +D   +VF+ M ++NV +WTS+I GY
Sbjct: 148 CEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNVVSWTSLICGY 207

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
            +   P +A+ LF  M E  ++P+ VT +  +SAC     +D G  +   +  +  +K  
Sbjct: 208 ARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAYIG-ELGLKLN 266

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
                 +VD+  + G+++ A +   E  ++
Sbjct: 267 KVMVNALVDMYMKCGAIDAAKRLFDECVDR 296



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 68/297 (22%), Positives = 131/297 (44%), Gaps = 42/297 (14%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           FYG   H ++ + G++   +I   ++ +++KCG  + A ++FD +  +T+ ++N + AG+
Sbjct: 350 FYGKVCHGYVIRNGLEGWDSIGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGF 409

Query: 122 LKNGQV-------------------------------EESLSLVRKLVSSGERPDGYTFS 150
           ++NG V                               E+++ L R++   G + D  T  
Sbjct: 410 IRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVT-- 467

Query: 151 MILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFD 210
           M+  AS C     P    L + VH  I K  +  D  L TALVD + + G    A  VF+
Sbjct: 468 MMGIASACGYLGAP---ELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQSAMQVFN 524

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETAR 266
            M E++V   T+ I     +G  E A  +F +     V+ D+V++  ++   S   +   
Sbjct: 525 KMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQV-E 583

Query: 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM-QQKNVFTWTSMI 322
           + L +   +  +     ++    +VD+  + G + +A  +   M  + N   W S++
Sbjct: 584 QGLHIFSLMEDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLL 640


>gi|297794983|ref|XP_002865376.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311211|gb|EFH41635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 658

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 170/496 (34%), Positives = 268/496 (54%), Gaps = 50/496 (10%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGAL--KYAG 100
           L  +SL S L   IN +      +IH H+ + G+  +  I  KL+    K G     Y  
Sbjct: 48  LLVSSLISKLDDCINLNQI---KQIHGHVLRKGLDQSCYILTKLIRTLTKLGVPMDPYPR 104

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           ++ + +  R    +  +I GY   G+ +E++++   +      P  +TFS +LKA   C 
Sbjct: 105 RVIEPVQFRNPFLWTAVIRGYTIEGKFDEAIAMYGCMRKEEITPVSFTFSALLKA---CG 161

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           S   L  NLGR  HAQ  +        +   ++D YVK G    AR VFD M E++VI  
Sbjct: 162 SMGDL--NLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCGSIVCARKVFDEMPERDVISW 219

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVF 280
           T +I+ +   G +E A ++F     KD+V + AM+ G++ + +  ++ALE   ++ K+  
Sbjct: 220 TELIAAYARVGNMESAADLFESLPTKDMVAWTAMVTGFAQNAK-PQEALEYFDRMEKSGI 278

Query: 281 FED-------------------------------------VKLGSALVDMYAKCGKIDDA 303
             D                                     V +GSAL+DMY+KCG +++A
Sbjct: 279 RADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMYSKCGNVEEA 338

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF-CMMQECCVQPNYVTFLGALSACGH 362
             VF  M  KNVF+++SMI G   +G   +AL+LF  M+ +  ++PN VTF+GAL+AC H
Sbjct: 339 VNVFVSMNNKNVFSYSSMILGLATHGRAQEALDLFHYMVTQTAIKPNTVTFVGALTACSH 398

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
           +GLVD+GR++F SM + + ++P  +HY CMVDLLGRAG L++AL+ +  M  +P+  VW 
Sbjct: 399 SGLVDQGRQVFASMYQTFGVEPTRDHYTCMVDLLGRAGRLQEALELIKTMSVEPHGGVWG 458

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
           ALL +CR+H++ ++A IAA  +F+L   D  G Y+ LSN  ++AG W  V  +R+ +K +
Sbjct: 459 ALLGACRIHNNPDIAEIAAEHLFELEP-DIIGNYILLSNVYSSAGDWGGVLSVRKLIKEK 517

Query: 483 GVLKDTGCSWVGTESG 498
           G+ K    SWV  ++G
Sbjct: 518 GLKKTPAVSWVVDKNG 533


>gi|15240591|ref|NP_196831.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181128|sp|Q9LYU9.1|PP378_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g13270, chloroplastic; Flags: Precursor
 gi|7529282|emb|CAB86634.1| putative protein [Arabidopsis thaliana]
 gi|332004490|gb|AED91873.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 752

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 150/447 (33%), Positives = 248/447 (55%), Gaps = 12/447 (2%)

Query: 52  LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL 111
           L+  +N     +G +IHAH+ + G+  NT+I   ++ +++KCG L  A ++FD++  +  
Sbjct: 191 LKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKP 250

Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR 171
            A   ++ GY + G+  ++L L   LV+ G   D + FS++LKA   C S   L  NLG+
Sbjct: 251 VACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKA---CASLEEL--NLGK 305

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
            +HA + K  ++++  + T LVD Y+K      A   F  + E N +  +++ISG+    
Sbjct: 306 QIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMS 365

Query: 232 FVEDAEEIFRKTVEKDIVV-----YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
             E+A + F+    K+  +     Y ++ +  S+ +       +VH   IK         
Sbjct: 366 QFEEAVKTFKSLRSKNASILNSFTYTSIFQACSV-LADCNIGGQVHADAIKRSLIGSQYG 424

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
            SAL+ MY+KCG +DDA  VF+ M   ++  WT+ I G+   GN ++AL LF  M  C +
Sbjct: 425 ESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGM 484

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
           +PN VTF+  L+AC HAGLV++G+   ++M R Y++ P ++HY CM+D+  R+G L++AL
Sbjct: 485 KPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEAL 544

Query: 407 KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
           KF+  MP +P++  W   LS C  H ++E+  IA  E+ +L+  D  G YV   N    A
Sbjct: 545 KFMKNMPFEPDAMSWKCFLSGCWTHKNLELGEIAGEELRQLDPEDTAG-YVLPFNLYTWA 603

Query: 467 GKWDSVTELREKMKLRGVLKDTGCSWV 493
           GKW+   E+ + M  R + K+  CSW+
Sbjct: 604 GKWEEAAEMMKLMNERMLKKELSCSWI 630



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 103/461 (22%), Positives = 203/461 (44%), Gaps = 55/461 (11%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G  +H  +      P+  +   +L ++ +C +L+ A ++FDE+ +    +   MI+ Y 
Sbjct: 101 HGRLLHDRMRMGIENPSVLLQNCVLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYA 160

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           + G +++++ L   +++SG++P    ++ +LK+        P   + GR +HA +++  +
Sbjct: 161 EQGILDKAVGLFSGMLASGDKPPSSMYTTLLKSLV-----NPRALDFGRQIHAHVIRAGL 215

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-- 240
            ++  + T +V+ YVK G    A+ VFD M  K  +  T ++ G+   G   DA ++F  
Sbjct: 216 CSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVD 275

Query: 241 --RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
              + VE D  V++ +++  + S+E      ++H  + K     +V +G+ LVD Y KC 
Sbjct: 276 LVTEGVEWDSFVFSVVLKACA-SLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCS 334

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF-CMMQECCVQPNYVTFLGAL 357
             + A R F  +++ N  +W+++I GY +     +A++ F  +  +     N  T+    
Sbjct: 335 SFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIF 394

Query: 358 SACG-----------HA------------------------GLVDKGREIFESMERDYSM 382
            AC            HA                        G +D   E+FESM+     
Sbjct: 395 QACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMD----- 449

Query: 383 KPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSCRLHDDVEMANI 439
            P +  +   +      G+  +AL+   +M     KPNS  + A+L++C     VE    
Sbjct: 450 NPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKH 509

Query: 440 AANEIF-KLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
             + +  K N       Y  + +  A +G  D   +  + M
Sbjct: 510 CLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALKFMKNM 550


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 148/434 (34%), Positives = 247/434 (56%), Gaps = 9/434 (2%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           I  +I +   + +  +   ++ ++ KCG ++ A ++FD + ++ + +++ MIA Y  +GQ
Sbjct: 153 IDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQ 212

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
             ++L L R ++SSG  PD  T + +L A +  ++       +GR++H  + K  +  D 
Sbjct: 213 GRKALDLFRMMLSSGMLPDKITLASLLYACSDLKN-----LQMGRLIHHIVYKFGLDLDH 267

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
            +  ALVD Y K  +   AR +FD M E++++  T MI G+   G   ++  +F K  E+
Sbjct: 268 FVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREE 327

Query: 247 DIV---VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
            +V   V    +      +    KA  +   + +  F  DV LG+A++DM+AKCG ++ A
Sbjct: 328 GVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESA 387

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
           R +FD M++KNV +W++MI  YG +G   +AL+LF MM    + PN +T +  L AC HA
Sbjct: 388 REIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHA 447

Query: 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA 423
           GLV++G   F  M  DYS++  ++HY C+VDLLGRAG L++ALK +  M  + +  +W A
Sbjct: 448 GLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGA 507

Query: 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483
            L +CR H DV +A  AA  + +L   + PG Y+ LSN  A AG+W+ V + R+ M  R 
Sbjct: 508 FLGACRTHKDVVLAEKAATSLLELQPQN-PGHYILLSNIYANAGRWEDVAKTRDLMSQRR 566

Query: 484 VLKDTGCSWVGTES 497
           + K  G +W+  ++
Sbjct: 567 LKKIPGWTWIEVDN 580



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 98/304 (32%), Positives = 156/304 (51%), Gaps = 13/304 (4%)

Query: 117 MIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
           M+ G+ K G         R+L+  G RPD YT   +++A   CR    L   +GR++H  
Sbjct: 1   MVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRA---CRDLKNL--QMGRLIHHI 55

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
           + K  +  D  +  ALVD YVK  +   AR +FD M E++++  T MI G+   G   ++
Sbjct: 56  VYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANES 115

Query: 237 EEIFRKTVEKDIV---VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDM 293
             +F K  E+ +V   V    +      +    KA  +   + +  F  DV LG+A++DM
Sbjct: 116 LVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDM 175

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           YAKCG ++ AR +FD M++KNV +W++MI  YG +G   +AL+LF MM    + P+ +T 
Sbjct: 176 YAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITL 235

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC--MVDLLGRAGSLEQALKFVLE 411
              L AC     +  GR I   +   Y     ++H+ C  +VD+ G+   +E A     +
Sbjct: 236 ASLLYACSDLKNLQMGRLIHHIV---YKFGLDLDHFVCAALVDMYGKCREIEDARFLFDK 292

Query: 412 MPEK 415
           MPE+
Sbjct: 293 MPER 296



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/372 (29%), Positives = 189/372 (50%), Gaps = 12/372 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH  + K G+  +  +   L+ +++KC  ++ A  +FD++ +R L  +  MI GY +
Sbjct: 49  GRLIHHIVYKFGLDLDHFVCAALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAE 108

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G+  ESL L  K+   G  PD    +M+     C +       +  R++   I +   +
Sbjct: 109 CGKANESLVLFEKMREEGVVPD--KVAMVTVVFACAKLG---AMHKARIIDDYIQRKKFQ 163

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D +L TA++D Y K G    AR +FD M EKNVI  ++MI+ +   G    A ++FR  
Sbjct: 164 LDVILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMM 223

Query: 244 VEK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           +      D +   +++   S  ++  +    +H  + K     D  + +ALVDMY KC +
Sbjct: 224 LSSGMLPDKITLASLLYACS-DLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCRE 282

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I+DAR +FD M ++++ TWT MI GY + GN N++L LF  M+E  V P+ V  +  + A
Sbjct: 283 IEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFA 342

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C   G + K R I + ++R    +  +     M+D+  + G +E A +    M EK N  
Sbjct: 343 CAKLGAMHKARTIDDYIQRK-KFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEK-NVI 400

Query: 420 VWAALLSSCRLH 431
            W+A++++   H
Sbjct: 401 SWSAMIAAYGYH 412


>gi|110738388|dbj|BAF01120.1| hypothetical protein [Arabidopsis thaliana]
          Length = 596

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 160/496 (32%), Positives = 253/496 (51%), Gaps = 30/496 (6%)

Query: 8   RSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKI 67
           R S  +  H R   ++P   TFPP L+    L +                   PF   + 
Sbjct: 86  RLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRD-----------------SNPF---QF 125

Query: 68  HAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV 127
           HAHI K G+  +  +   L+  +   G   +A ++FD    + +  +  MI G+++NG  
Sbjct: 126 HAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSA 185

Query: 128 EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD-VKADD 186
            E++    ++  +G   +  T   +LKA+      V   R  GR VH   L+   VK D 
Sbjct: 186 SEAMVYFVEMKKTGVAANEMTVVSVLKAA----GKVEDVR-FGRSVHGLYLETGRVKCDV 240

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
            + ++LVD Y K      A+ VFD M  +NV+  T++I+G++     +    +F + ++ 
Sbjct: 241 FIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKS 300

Query: 247 DIVVYNAMIEGY---SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
           D+      +         +    +   VHC +IKN    +   G+ L+D+Y KCG +++A
Sbjct: 301 DVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEA 360

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
             VF+ + +KNV+TWT+MI+G+  +G    A +LF  M    V PN VTF+  LSAC H 
Sbjct: 361 ILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHG 420

Query: 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA 423
           GLV++GR +F SM+  ++M+ K +HYACMVDL GR G LE+A   +  MP +P + VW A
Sbjct: 421 GLVEEGRRLFLSMKGRFNMELKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGA 480

Query: 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483
           L  SC LH D E+   AA+ + KL  +   G Y  L+N  + +  WD V  +R++MK + 
Sbjct: 481 LFGSCLLHKDYELGKYAASRVIKLQPS-HSGRYTLLANLYSESQNWDEVARVRKQMKDQQ 539

Query: 484 VLKDTGCSWVGTESGL 499
           V+K  G SW+  +  L
Sbjct: 540 VVKSPGFSWIEVKGKL 555


>gi|357154074|ref|XP_003576661.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Brachypodium distachyon]
          Length = 802

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 148/438 (33%), Positives = 251/438 (57%), Gaps = 12/438 (2%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           KIHAH+  +    +  +   L+ L+ KCG++  A ++FD++  + + ++  +IAGY +N 
Sbjct: 72  KIHAHLASSRFAGDAFLDNSLIHLYCKCGSVVEAHKVFDKMRNKDMVSWTSLIAGYAQND 131

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              E++ L+  ++    +P+G+TF+ +LKA      +      +G  +HA  +KCD   D
Sbjct: 132 MPAEAIGLLPGMLKGRFKPNGFTFASLLKAVGAYADS-----GIGGQIHALAVKCDWHED 186

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----R 241
             + +AL+D Y + GK   A  VFD +  KN +   ++ISGF  +G  E A  +F    R
Sbjct: 187 VYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGETALMVFAEMQR 246

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
              E     Y+++    +  I    +   VH  +IK+       +G+ ++DMYAK G + 
Sbjct: 247 NGFEATHFTYSSIFSALA-GIGALEQGKWVHAHMIKSRQKLTAFVGNTMLDMYAKSGSMI 305

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           DAR+VF+ +  K++ TW SM+  + + G   +A+  F  M++  +  N ++FL  L+AC 
Sbjct: 306 DARKVFERVLNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGIYLNQISFLCILTACS 365

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
           H GLV +G+  F+ M ++Y+++P++EHY  +VDLLGRAG L  AL F+ +MP +P + VW
Sbjct: 366 HGGLVKEGKHYFD-MIKEYNLEPEIEHYVTVVDLLGRAGLLNYALVFIFKMPMEPTAAVW 424

Query: 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
            ALL++CR+H + ++   AA+ +F+L+ +D  G  V L N  A+ G WD+   +R+ MK 
Sbjct: 425 GALLAACRMHKNAKVGQFAADHVFQLDPDDS-GPPVLLYNIYASTGHWDAAARVRKMMKA 483

Query: 482 RGVLKDTGCSWVGTESGL 499
            GV K+  CSWV  E+ +
Sbjct: 484 TGVKKEPACSWVEIENSV 501


>gi|75273443|sp|Q9LIQ7.1|PP252_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g24000, mitochondrial; Flags: Precursor
 gi|9294669|dbj|BAB03018.1| unnamed protein product [Arabidopsis thaliana]
          Length = 633

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 157/513 (30%), Positives = 275/513 (53%), Gaps = 49/513 (9%)

Query: 29  FPPKL-------QNYDSLSNPLTATSLPSALQH-----------------YINSDTPFY- 63
           FPP+L       +  +SL  P++  S   +L+                  YI +D  FY 
Sbjct: 5   FPPRLLSQLKLSRRLNSLPAPVSEDSEDESLKFPSNDLLLRTSSNDLEGSYIPADRRFYN 64

Query: 64  --------------GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQR 109
                         G  +HAHI ++  + +  +   LL ++ KCG+L+ A ++F+++PQR
Sbjct: 65  TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQR 124

Query: 110 TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL 169
               +  +I+GY ++ +  ++L    +++  G  P+ +T S ++KA+   R         
Sbjct: 125 DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGC-----C 179

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           G  +H   +KC   ++  + +AL+D Y + G    A++VFD +  +N +   ++I+G   
Sbjct: 180 GHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHAR 239

Query: 230 QGFVEDAEEIFRKTVEKDIVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
           +   E A E+F+  +       +   A + G   S     +   VH  +IK+        
Sbjct: 240 RSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFA 299

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
           G+ L+DMYAK G I DAR++FD + +++V +W S++  Y ++G   +A+  F  M+   +
Sbjct: 300 GNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGI 359

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
           +PN ++FL  L+AC H+GL+D+G   +E M++D  + P+  HY  +VDLLGRAG L +AL
Sbjct: 360 RPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRAL 418

Query: 407 KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
           +F+ EMP +P + +W ALL++CR+H + E+   AA  +F+L+ +D PG +V L N  A+ 
Sbjct: 419 RFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDD-PGPHVILYNIYASG 477

Query: 467 GKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           G+W+    +R+KMK  GV K+  CSWV  E+ +
Sbjct: 478 GRWNDAARVRKKMKESGVKKEPACSWVEIENAI 510


>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  275 bits (704), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 158/442 (35%), Positives = 244/442 (55%), Gaps = 18/442 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G   H  +   G   N  I+  L+ +H +  AL  A Q+FDEL +     +  +I+   +
Sbjct: 239 GRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTR 298

Query: 124 NGQVEESLSLVRKLVSS-GERPDGYTFSMILKASTCCRSNVPLPRNLGRM-----VHAQI 177
           N   +E+L     +    G  PDG+TF  +L A            NLGR+     VHA++
Sbjct: 299 NDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACG----------NLGRLKQGKEVHAKV 348

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
           +      + V+ ++LVD Y K G    ++ +FD M  KN +  ++++ G+   G  +   
Sbjct: 349 ITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVI 408

Query: 238 EIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           +IFRK  + D+  +  ++   +  +   R+  EVHCQ I+   + DV + SALVD+YAKC
Sbjct: 409 QIFRKMEKVDLYCFGTILRTCA-GLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKC 467

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G I+ A+ +FD M  +N+ TW SMI G+ +NG   +AL +F  M +  ++P+Y++F+G L
Sbjct: 468 GCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGIL 527

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            AC H GLVD+GRE F SM +DY +K  +EHY+CMVDLLGRAG LE+A   +     + +
Sbjct: 528 FACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDD 587

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
           S +WAALL +C    + E+A   A  + +L   D   +YV L+N   A G+W+    +R 
Sbjct: 588 SSLWAALLGACTTCTNYEIAERIAKRVMELEP-DYHLSYVLLANVYKAVGRWNDALRIRR 646

Query: 478 KMKLRGVLKDTGCSWVGTESGL 499
            MK RGV K  G SW+ T++ L
Sbjct: 647 LMKDRGVNKMPGKSWIETKNNL 668



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/424 (28%), Positives = 214/424 (50%), Gaps = 27/424 (6%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGA-LKYAGQMFDELPQRTLSAYNYMIAGY 121
           +GL+IHAH+ K+G++ +  +   LL L+ K G       ++FD L  + + ++  MI+GY
Sbjct: 136 HGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGY 195

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           ++ G+   SL L  K+++ G  P+ +T S ++KA   C     L   LGR+ H  +L   
Sbjct: 196 VRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKA---CSELGDL--KLGRIFHGVVLGRG 250

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
             ++ V+ +AL+D + +      AR +FD +LE + IC TS+IS      F ++A   F 
Sbjct: 251 FDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFF- 309

Query: 242 KTVEKDIVVYNAMIEGYSI-SIETA-------RKALEVHCQLIKNVFFEDVKLGSALVDM 293
            ++++D   +    +G++  ++ TA       ++  EVH ++I   F  +V + S+LVDM
Sbjct: 310 YSMQRD---HGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDM 366

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           Y KCG + +++R+FD M  KN  +W++++ GY +NG+    +++F  M++     +   F
Sbjct: 367 YGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEKV----DLYCF 422

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
              L  C     V +G+E+     R    +  +   A +VDL  + G +E A     +MP
Sbjct: 423 GTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESA-LVDLYAKCGCIEYAQTIFDQMP 481

Query: 414 EKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473
            + N   W +++     +   E A    N++ K     +P  Y++    L A      V 
Sbjct: 482 VR-NLITWNSMIGGFAQNGRGEEALRIFNQMVK--EGIKPD-YISFIGILFACSHRGLVD 537

Query: 474 ELRE 477
           E RE
Sbjct: 538 EGRE 541



 Score =  112 bits (279), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 158/312 (50%), Gaps = 16/312 (5%)

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           K+G++  +L L++ +      P   +   +L AS        L  N G  +HA ++K  +
Sbjct: 95  KSGELSGALQLLKSI-----DPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGL 149

Query: 183 KADDVLYTALVDSYVK-GGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           + D  +  +L+  Y K G      R VFD +  K+VI  TSMISG++  G   ++ E+F 
Sbjct: 150 EFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFW 209

Query: 242 KT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           K     VE +    +A+I+  S  +   +     H  ++   F  +  + SAL+DM+ + 
Sbjct: 210 KMLAYGVEPNAFTLSAVIKACS-ELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRN 268

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ-ECCVQPNYVTFLGA 356
             +DDAR++FD + + +   WTS+I    +N   ++AL  F  MQ +  + P+  TF   
Sbjct: 269 CALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTV 328

Query: 357 LSACGHAGLVDKGREIF-ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
           L+ACG+ G + +G+E+  + +   +     +E  + +VD+ G+ GS+ ++ +    MP K
Sbjct: 329 LTACGNLGRLKQGKEVHAKVITTGFCGNVVVE--SSLVDMYGKCGSVGESQRIFDRMPIK 386

Query: 416 PNSDVWAALLSS 427
            NS  W+ALL  
Sbjct: 387 -NSVSWSALLGG 397


>gi|357129337|ref|XP_003566320.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Brachypodium distachyon]
          Length = 661

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 163/523 (31%), Positives = 265/523 (50%), Gaps = 72/523 (13%)

Query: 39  LSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKY 98
           +S P     LPSAL+   +         +HA    +G+  +  ++  LL  +++ GA   
Sbjct: 14  VSFPPDPHLLPSALK---SCPAQPLARALHAAAVVSGLAEDPFVASSLLHSYIRLGATGA 70

Query: 99  AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA--- 155
           A  +FD +P++ +  ++ +IAGY   G  E +  L+ ++ S+G  P+  T++ ++     
Sbjct: 71  ARSVFDRMPEKNVVGWSALIAGYSARGDAEAAWGLLEQMRSAGVEPNVITWNGLVSGLNR 130

Query: 156 -------------------------STCCRSNVPLPR--NLGRMVHAQILKCDVKADDVL 188
                                     +C  S V   +  ++G+ VH  ++K   + D  +
Sbjct: 131 SGRALDAVTALVRMHSEGFFPDATGVSCALSAVGDVKEVSVGKQVHGYVVKAGCRLDACV 190

Query: 189 YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR----KTV 244
            TAL+D Y K G+      VF      +V    ++++G      V +A  +FR    + V
Sbjct: 191 VTALIDMYGKCGRADEIVRVFHESSHMDVASCNALVAGLSRNAQVSEALLLFREFICRGV 250

Query: 245 EKDIVVYNAMI------------------------EGYSISIETARKAL----------E 270
           E ++V + +++                        E  S++I     A            
Sbjct: 251 ELNVVSWTSIVACCVQNGRDLEAVDLFRTMQSIGVEPNSVTIPCVLPAFANVAALMHGRS 310

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
            HC  ++  F  DV +GSALVDMYAKCGK   AR +FD M  +NV +W +MI GY  +G+
Sbjct: 311 AHCFSLRKGFLHDVYVGSALVDMYAKCGKARHARTIFDAMPSRNVVSWNAMIGGYAMHGD 370

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
              A++LFC MQ+C  +P+ VTF   L AC  AGL ++GR  F  M++ + + P+MEHYA
Sbjct: 371 AANAVQLFCSMQKCKQKPDLVTFTCVLGACSQAGLTEEGRRYFNEMQQGHGISPRMEHYA 430

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
           CMV LLGR+G L++A   + EMP +P+S +W +LL SCR++ +V +A +AA ++F+L   
Sbjct: 431 CMVTLLGRSGKLDEAYDLINEMPFEPDSCIWGSLLGSCRVYGNVLLAEVAAEKLFQLEPG 490

Query: 451 DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           +  G YV LSN  A+   WD V  +R++MK  G+ K+ GCSW+
Sbjct: 491 N-AGNYVLLSNIYASKKMWDGVNRVRDEMKNMGLKKEKGCSWI 532


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 149/434 (34%), Positives = 242/434 (55%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+KIH  + K G   +  +   L+ L+ KCG L+ A ++FD++P + + ++  +I+GY+ 
Sbjct: 131 GVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIISGYIG 190

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G+  E++ + R+L+     PD +T   +L A T          N G  +H  I++  + 
Sbjct: 191 VGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGD-----LNSGEWIHKCIMEMGMV 245

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
            +  + T+LVD Y K G    AR VFD M EK+++   +MI G+   G  ++A ++F   
Sbjct: 246 RNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQM 305

Query: 241 -RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            R+ V+ D      ++   +  +        V   + +N F  +  LG+AL+D+YAKCG 
Sbjct: 306 QRENVKPDCYTVVGVLSACA-RLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGS 364

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +  A  VF  M++K+   W ++I G   NG    +  LF  +++  ++P+  TF+G L  
Sbjct: 365 MSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCG 424

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C HAGLVD+GR  F SM R +S+ P +EHY CMVDLLGRAG L++A + +  MP + N+ 
Sbjct: 425 CTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAI 484

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW ALL +CR+H D ++A +A  ++ +L   +  G YV LSN  +A  KWD   ++R  M
Sbjct: 485 VWGALLGACRIHRDTQLAELALKQLIELEPWN-SGNYVLLSNIYSANLKWDEAAKVRLSM 543

Query: 480 KLRGVLKDTGCSWV 493
             + + K  GCSW+
Sbjct: 544 NEKRIQKPPGCSWI 557



 Score =  165 bits (417), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 115/380 (30%), Positives = 197/380 (51%), Gaps = 24/380 (6%)

Query: 98  YAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           Y   +F ++ Q  +  +N MI G + N   ++++     + S G  P+ +TF  +LKA  
Sbjct: 64  YTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKA-- 121

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
           C R    L   LG  +H  ++K     D  + T+LV  Y K G    A  VFD + +KNV
Sbjct: 122 CARL---LDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNV 178

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKTVEKDIV--------VYNAMIE-GYSISIETARKA 268
           +  T++ISG++  G   +A ++FR+ +E ++         V +A  + G   S E   K 
Sbjct: 179 VSWTAIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKC 238

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
           + +   +++NVF     +G++LVDMYAKCG ++ AR VFD M +K++ +W +MI GY  N
Sbjct: 239 I-MEMGMVRNVF-----VGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALN 292

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER-DYSMKPKME 387
           G P +A++LF  MQ   V+P+  T +G LSAC   G ++ G  +   ++R ++   P + 
Sbjct: 293 GLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPVLG 352

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
               ++DL  + GS+ +A +    M EK +  VW A++S   ++  V+++     ++ KL
Sbjct: 353 --TALIDLYAKCGSMSRAWEVFKGMKEK-DRVVWNAIISGLAMNGYVKISFGLFGQVEKL 409

Query: 448 NANDRPGAYVALSNTLAAAG 467
                   ++ L      AG
Sbjct: 410 GIKPDGNTFIGLLCGCTHAG 429


>gi|7523419|emb|CAB86438.1| putative protein [Arabidopsis thaliana]
          Length = 1017

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 154/433 (35%), Positives = 242/433 (55%), Gaps = 10/433 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+++HA++ K G   N  +   L+ ++ KC    Y G+ F  +  + L ++  +IAGY +
Sbjct: 368 GMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQ 427

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N    E+L L R +       D      IL+AS+  +S + +     + +H  IL+  + 
Sbjct: 428 NDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIV-----KEIHCHILRKGL- 481

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D V+   LVD Y K     YA  VF+ +  K+V+  TSMIS     G   +A E+FR+ 
Sbjct: 482 LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRM 541

Query: 244 VEKDIVVYNAM---IEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           VE  +   +     I   + S+    K  E+HC L++  F  +  +  A+VDMYA CG +
Sbjct: 542 VETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDL 601

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
             A+ VFD +++K +  +TSMI+ YG +G    A+ELF  M+   V P++++FL  L AC
Sbjct: 602 QSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYAC 661

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            HAGL+D+GR   + ME +Y ++P  EHY C+VD+LGRA  + +A +FV  M  +P ++V
Sbjct: 662 SHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEV 721

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W ALL++CR H + E+  IAA  + +L   + PG  V +SN  A  G+W+ V ++R KMK
Sbjct: 722 WCALLAACRSHSEKEIGEIAAQRLLELEPKN-PGNLVLVSNVFAEQGRWNDVEKVRAKMK 780

Query: 481 LRGVLKDTGCSWV 493
             G+ K  GCSW+
Sbjct: 781 ASGMEKHPGCSWI 793



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 136/291 (46%), Gaps = 20/291 (6%)

Query: 93  CGALKYAGQ--MFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFS 150
           CG  +   Q  +FDE+P RT  A+N MI  Y+ NG+   +L+L   +   G      +F 
Sbjct: 90  CGKRRAVSQEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFP 149

Query: 151 MILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFD 210
            +LKA    R         G  +H+ ++K    +   +  ALV  Y K    S AR +FD
Sbjct: 150 ALLKACAKLRDIRS-----GSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFD 204

Query: 211 MMLEK-NVICSTSMISGFMSQGFVEDAEEIFRKT-----VEKDIVVYNAMI--EGYSISI 262
              EK + +   S++S + + G   +  E+FR+            + +A+   +G+S   
Sbjct: 205 GFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSY-- 262

Query: 263 ETARKALEVHCQLIKN-VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
             A+   E+H  ++K+     ++ + +AL+ MY +CGK+  A R+   M   +V TW S+
Sbjct: 263 --AKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSL 320

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           I GY +N    +ALE F  M     + + V+    ++A G    +  G E+
Sbjct: 321 IKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMEL 371



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 63/236 (26%), Positives = 106/236 (44%), Gaps = 33/236 (13%)

Query: 208 VFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIET--- 264
           VFD M ++      +MI  ++S G    A  ++          +N  +EG  + + +   
Sbjct: 101 VFDEMPDRTAFAWNTMIGAYVSNGEPASALALY----------WNMRVEGVPLGLSSFPA 150

Query: 265 ----------ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK- 313
                      R   E+H  L+K  +     + +ALV MYAK   +  ARR+FD  Q+K 
Sbjct: 151 LLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKG 210

Query: 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF 373
           +   W S++  Y  +G   + LELF  M      PN  T + AL+AC        G+EI 
Sbjct: 211 DAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIH 270

Query: 374 ESMERDYSMKPKMEHYAC--MVDLLGRAGSLEQALKFVLEMPEKPNSDV--WAALL 425
            S+ +  +   ++  Y C  ++ +  R G + QA + + +M    N+DV  W +L+
Sbjct: 271 ASVLKSSTHSSEL--YVCNALIAMYTRCGKMPQAERILRQM---NNADVVTWNSLI 321


>gi|334186228|ref|NP_191896.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646951|gb|AEE80472.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 884

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 154/433 (35%), Positives = 242/433 (55%), Gaps = 10/433 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+++HA++ K G   N  +   L+ ++ KC    Y G+ F  +  + L ++  +IAGY +
Sbjct: 405 GMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQ 464

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N    E+L L R +       D      IL+AS+  +S +     + + +H  IL+  + 
Sbjct: 465 NDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSML-----IVKEIHCHILRKGL- 518

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D V+   LVD Y K     YA  VF+ +  K+V+  TSMIS     G   +A E+FR+ 
Sbjct: 519 LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRM 578

Query: 244 VEKDIVVYNAM---IEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           VE  +   +     I   + S+    K  E+HC L++  F  +  +  A+VDMYA CG +
Sbjct: 579 VETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDL 638

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
             A+ VFD +++K +  +TSMI+ YG +G    A+ELF  M+   V P++++FL  L AC
Sbjct: 639 QSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYAC 698

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            HAGL+D+GR   + ME +Y ++P  EHY C+VD+LGRA  + +A +FV  M  +P ++V
Sbjct: 699 SHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEV 758

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W ALL++CR H + E+  IAA  + +L   + PG  V +SN  A  G+W+ V ++R KMK
Sbjct: 759 WCALLAACRSHSEKEIGEIAAQRLLELEPKN-PGNLVLVSNVFAEQGRWNDVEKVRAKMK 817

Query: 481 LRGVLKDTGCSWV 493
             G+ K  GCSW+
Sbjct: 818 ASGMEKHPGCSWI 830



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 155/321 (48%), Gaps = 23/321 (7%)

Query: 64  GLKIHAHITKTGVKPNTNISI---KLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120
           G ++H+ I KT   P+  +     KL+ ++ KCG+L  A ++FDE+P RT  A+N MI  
Sbjct: 99  GRQLHSRIFKTF--PSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGA 156

Query: 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
           Y+ NG+   +L+L   +   G      +F  +LKA    R         G  +H+ ++K 
Sbjct: 157 YVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRS-----GSELHSLLVKL 211

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK-NVICSTSMISGFMSQGFVEDAEEI 239
              +   +  ALV  Y K    S AR +FD   EK + +   S++S + + G   +  E+
Sbjct: 212 GYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLEL 271

Query: 240 FRKT-----VEKDIVVYNAMI--EGYSISIETARKALEVHCQLIKN-VFFEDVKLGSALV 291
           FR+            + +A+   +G+S     A+   E+H  ++K+     ++ + +AL+
Sbjct: 272 FREMHMTGPAPNSYTIVSALTACDGFSY----AKLGKEIHASVLKSSTHSSELYVCNALI 327

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
            MY +CGK+  A R+   M   +V TW S+I GY +N    +ALE F  M     + + V
Sbjct: 328 AMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEV 387

Query: 352 TFLGALSACGHAGLVDKGREI 372
           +    ++A G    +  G E+
Sbjct: 388 SMTSIIAASGRLSNLLAGMEL 408



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 123/275 (44%), Gaps = 34/275 (12%)

Query: 170 GRMVHAQILKCDVKAD-DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM 228
           GR +H++I K     + D L   LV  Y K G    A  VFD M ++      +MI  ++
Sbjct: 99  GRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYV 158

Query: 229 SQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIET-------------ARKALEVHCQL 275
           S G    A  ++          +N  +EG  + + +              R   E+H  L
Sbjct: 159 SNGEPASALALY----------WNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLL 208

Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNGNPNQA 334
           +K  +     + +ALV MYAK   +  ARR+FD  Q+K +   W S++  Y  +G   + 
Sbjct: 209 VKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLET 268

Query: 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC--M 392
           LELF  M      PN  T + AL+AC        G+EI  S+ +  +   ++  Y C  +
Sbjct: 269 LELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSEL--YVCNAL 326

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDV--WAALL 425
           + +  R G + QA + + +M    N+DV  W +L+
Sbjct: 327 IAMYTRCGKMPQAERILRQM---NNADVVTWNSLI 358



 Score = 78.6 bits (192), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 20/194 (10%)

Query: 247 DIVVYNAMIEGYSISIETA--RKALEVHCQLIKNVF-----FEDVKLGSALVDMYAKCGK 299
           D+   N+ +E ++  +E    R+A+    QL   +F     FE   L   LV MY KCG 
Sbjct: 72  DVSENNSPVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGS 131

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +DDA +VFD M  +  F W +MI  Y  NG P  AL L+  M+   V     +F   L A
Sbjct: 132 LDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKA 191

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYA------CMVDLLGRAGSLEQALKFVLEMP 413
           C     +  G E+       +S+  K+ +++       +V +  +   L  A +      
Sbjct: 192 CAKLRDIRSGSEL-------HSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQ 244

Query: 414 EKPNSDVWAALLSS 427
           EK ++ +W ++LSS
Sbjct: 245 EKGDAVLWNSILSS 258


>gi|225456313|ref|XP_002280013.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic [Vitis vinifera]
          Length = 704

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 143/431 (33%), Positives = 245/431 (56%), Gaps = 9/431 (2%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           K+  ++  +G+ P+  +  ++L++H+KCG +  A ++FDE+P++ + ++N +I G +  G
Sbjct: 152 KVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAG 211

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              E+  L   +           F  +++AS             GR +H+  LK  V  D
Sbjct: 212 DYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLGLIFA-----GRQLHSCSLKTGVGGD 266

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             +  AL+D Y K G    A+ VFD M EK  +   S+I+G+   G+ E+A  ++ +  +
Sbjct: 267 VFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRD 326

Query: 246 KDIVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
             + + N   ++I      + +   A + H  L+++ F  D+   +ALVD+Y+K G+I+D
Sbjct: 327 SGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIED 386

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           A+ VFD M  KNV +W ++I GYG +G   +A+E+F  M    + PN+VTFL  LSAC +
Sbjct: 387 AKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSY 446

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
           +GL D+G EIFESM RD+ +KP+  HYACM++LLGR G L++A   + + P KP  ++WA
Sbjct: 447 SGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWA 506

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
           ALL++CR+H + E+   AA +++ +   ++   YV L N    +G+ +    + + +K R
Sbjct: 507 ALLTACRVHKNFELGKFAAEKLYGMGP-EKLSNYVVLLNIYNRSGRLEEAAAVIQTLKRR 565

Query: 483 GVLKDTGCSWV 493
           G+     CSW+
Sbjct: 566 GLRMLPACSWI 576



 Score =  121 bits (304), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 174/350 (49%), Gaps = 49/350 (14%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           F G ++H+   KTGV  +  ++  L+ ++ KCG+++ A  +FD++P++T   +N +IAGY
Sbjct: 249 FAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGY 308

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
             +G  EE+LS+  ++  SG + D +TFS+I++    C     L     +  HA +++  
Sbjct: 309 ALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIR---ICARLASLEH--AKQAHAGLVRHG 363

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
              D V  TALVD Y K G+   A+ VFDMM  KNVI   ++I+G+ + G   +A E+F 
Sbjct: 364 FGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFE 423

Query: 242 KTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           + + + +    V + A++   S S  + R                    G  + +  ++ 
Sbjct: 424 RMLHEGMVPNHVTFLAVLSACSYSGLSDR--------------------GWEIFESMSR- 462

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
                     DH  +     +  MI+  G+ G  ++A   F ++++   +P    +   L
Sbjct: 463 ----------DHKIKPRAMHYACMIELLGREGLLDEA---FALIKDAPFKPTVNMWAALL 509

Query: 358 SACGHAGLVDKGREIFE-SMERDYSMKP-KMEHYACMVDLLGRAGSLEQA 405
           +AC     V K  E+ + + E+ Y M P K+ +Y  ++++  R+G LE+A
Sbjct: 510 TAC----RVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNRSGRLEEA 555



 Score = 74.7 bits (182), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 11/195 (5%)

Query: 247 DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRV 306
           D   Y+A++    I +++ R   +V   +I +    D  L + ++ M+ KCG + DARR+
Sbjct: 130 DSETYDALVSA-CIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRL 188

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           FD M +KN+ +W ++I G    G+  +A  LF MM +         F+  + A    GL+
Sbjct: 189 FDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLGLI 248

Query: 367 DKGREIFESMERDYSMKPKME---HYAC-MVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
             GR++        S+K  +      AC ++D+  + GS+E A     +MPEK     W 
Sbjct: 249 FAGRQLHSC-----SLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVG-WN 302

Query: 423 ALLSSCRLHDDVEMA 437
           ++++   LH   E A
Sbjct: 303 SIIAGYALHGYSEEA 317


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 154/433 (35%), Positives = 242/433 (55%), Gaps = 10/433 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+++HA++ K G   N  +   L+ ++ KC    Y G+ F  +  + L ++  +IAGY +
Sbjct: 405 GMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQ 464

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N    E+L L R +       D      IL+AS+  +S + +     + +H  IL+  + 
Sbjct: 465 NDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIV-----KEIHCHILRKGL- 518

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D V+   LVD Y K     YA  VF+ +  K+V+  TSMIS     G   +A E+FR+ 
Sbjct: 519 LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRM 578

Query: 244 VEKDIVVYNAM---IEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           VE  +   +     I   + S+    K  E+HC L++  F  +  +  A+VDMYA CG +
Sbjct: 579 VETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDL 638

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
             A+ VFD +++K +  +TSMI+ YG +G    A+ELF  M+   V P++++FL  L AC
Sbjct: 639 QSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYAC 698

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            HAGL+D+GR   + ME +Y ++P  EHY C+VD+LGRA  + +A +FV  M  +P ++V
Sbjct: 699 SHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEV 758

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W ALL++CR H + E+  IAA  + +L   + PG  V +SN  A  G+W+ V ++R KMK
Sbjct: 759 WCALLAACRSHSEKEIGEIAAQRLLELEPKN-PGNLVLVSNVFAEQGRWNDVEKVRAKMK 817

Query: 481 LRGVLKDTGCSWV 493
             G+ K  GCSW+
Sbjct: 818 ASGMEKHPGCSWI 830



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/321 (28%), Positives = 155/321 (48%), Gaps = 23/321 (7%)

Query: 64  GLKIHAHITKTGVKPNTNISI---KLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120
           G ++H+ I KT   P+  +     KL+ ++ KCG+L  A ++FDE+P RT  A+N MI  
Sbjct: 99  GRQLHSRIFKTF--PSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGA 156

Query: 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
           Y+ NG+   +L+L   +   G      +F  +LKA    R         G  +H+ ++K 
Sbjct: 157 YVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRS-----GSELHSLLVKL 211

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK-NVICSTSMISGFMSQGFVEDAEEI 239
              +   +  ALV  Y K    S AR +FD   EK + +   S++S + + G   +  E+
Sbjct: 212 GYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLEL 271

Query: 240 FRKT-----VEKDIVVYNAMI--EGYSISIETARKALEVHCQLIKN-VFFEDVKLGSALV 291
           FR+            + +A+   +G+S     A+   E+H  ++K+     ++ + +AL+
Sbjct: 272 FREMHMTGPAPNSYTIVSALTACDGFSY----AKLGKEIHASVLKSSTHSSELYVCNALI 327

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
            MY +CGK+  A R+   M   +V TW S+I GY +N    +ALE F  M     + + V
Sbjct: 328 AMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEV 387

Query: 352 TFLGALSACGHAGLVDKGREI 372
           +    ++A G    +  G E+
Sbjct: 388 SMTSIIAASGRLSNLLAGMEL 408



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 123/275 (44%), Gaps = 34/275 (12%)

Query: 170 GRMVHAQILKCDVKAD-DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM 228
           GR +H++I K     + D L   LV  Y K G    A  VFD M ++      +MI  ++
Sbjct: 99  GRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYV 158

Query: 229 SQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIET-------------ARKALEVHCQL 275
           S G    A  ++          +N  +EG  + + +              R   E+H  L
Sbjct: 159 SNGEPASALALY----------WNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLL 208

Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNGNPNQA 334
           +K  +     + +ALV MYAK   +  ARR+FD  Q+K +   W S++  Y  +G   + 
Sbjct: 209 VKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLET 268

Query: 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC--M 392
           LELF  M      PN  T + AL+AC        G+EI  S+ +  +   ++  Y C  +
Sbjct: 269 LELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSEL--YVCNAL 326

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDV--WAALL 425
           + +  R G + QA + + +M    N+DV  W +L+
Sbjct: 327 IAMYTRCGKMPQAERILRQM---NNADVVTWNSLI 358



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 20/194 (10%)

Query: 247 DIVVYNAMIEGYSISIETA--RKALEVHCQLIKNVF-----FEDVKLGSALVDMYAKCGK 299
           D+   N+ +E ++  +E    R+A+    QL   +F     FE   L   LV MY KCG 
Sbjct: 72  DVSENNSPVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGS 131

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +DDA +VFD M  +  F W +MI  Y  NG P  AL L+  M+   V     +F   L A
Sbjct: 132 LDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKA 191

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYA------CMVDLLGRAGSLEQALKFVLEMP 413
           C     +  G E+       +S+  K+ +++       +V +  +   L  A +      
Sbjct: 192 CAKLRDIRSGSEL-------HSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQ 244

Query: 414 EKPNSDVWAALLSS 427
           EK ++ +W ++LSS
Sbjct: 245 EKGDAVLWNSILSS 258


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 157/443 (35%), Positives = 248/443 (55%), Gaps = 15/443 (3%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G ++HA I   G++ +  +   LL ++ KCG++  A ++FD L    + ++  MI  Y 
Sbjct: 147 WGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYA 206

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           ++G  +E+  L+ ++   G +P+  T+  IL A   C S   L     + VH   L   +
Sbjct: 207 QSGNGKEAYRLMLQMEQEGFKPNAITYVSILNA---CASEGALK--WVKRVHRHALDAGL 261

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           + D  + TALV  Y K G    AR+VFD M  ++V+    MI  F   G   +A ++F +
Sbjct: 262 ELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQ 321

Query: 243 T----VEKDIVVYNAMIEGYSIS--IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
                 + D +++ +++   + +  +E  +K   +H   + +    DV++G+ALV MY+K
Sbjct: 322 MQTEGCKPDAIMFLSILNACASAGALEWVKK---IHRHALDSGLEVDVRVGTALVHMYSK 378

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
            G IDDAR VFD M+ +NV +W +MI G  ++G    ALE+F  M    V+P+ VTF+  
Sbjct: 379 SGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAV 438

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           LSAC HAGLVD+GR  + +M + Y ++P + H  CMVDLLGRAG L +A  F+  M   P
Sbjct: 439 LSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDP 498

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
           +   W ALL SCR + +VE+  + A E  KL+  +    YV LSN  A AGKWD V+ +R
Sbjct: 499 DEATWGALLGSCRTYGNVELGELVAKERLKLDPKN-AATYVLLSNIYAEAGKWDMVSWVR 557

Query: 477 EKMKLRGVLKDTGCSWVGTESGL 499
             M+ RG+ K+ G SW+  ++ +
Sbjct: 558 TMMRERGIRKEPGRSWIEVDNKI 580



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 110/371 (29%), Positives = 205/371 (55%), Gaps = 14/371 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++H  I K+ ++ N ++   LL ++++CG L+ A  +FD L +++ +++N MIAGY+++ 
Sbjct: 49  QVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHK 108

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             E+++ L R++   G +P+  T+ +ILKA   C S   L    G+ VHA I    +++D
Sbjct: 109 HAEDAMRLFREMCHEGVQPNAGTYMIILKA---CASLSALK--WGKEVHACIRHGGLESD 163

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----R 241
             + TAL+  Y K G  + AR +FD ++  ++I  T MI  +   G  ++A  +     +
Sbjct: 164 VRVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQ 223

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALE-VHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           +  + + + Y +++   + + E A K ++ VH   +      DV++G+ALV MYAK G I
Sbjct: 224 EGFKPNAITYVSILN--ACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSI 281

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           DDAR VFD M+ ++V +W  MI  + ++G  ++A +LF  MQ    +P+ + FL  L+AC
Sbjct: 282 DDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNAC 341

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
             AG ++  ++I      D  ++  +     +V +  ++GS++ A + V +  +  N   
Sbjct: 342 ASAGALEWVKKIHRH-ALDSGLEVDVRVGTALVHMYSKSGSIDDA-RVVFDRMKVRNVVS 399

Query: 421 WAALLSSCRLH 431
           W A++S    H
Sbjct: 400 WNAMISGLAQH 410



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 100/418 (23%), Positives = 189/418 (45%), Gaps = 64/418 (15%)

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
           + E++ ++   +  G   D + +  +LK   C +    +     + VH  I+K  ++ + 
Sbjct: 9   LSEAIVVLMNRLQRGLITDSFMYVEVLK--RCLKQKDLMA---AKQVHDCIIKSRMEQNA 63

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT--- 243
            +   L+  Y++ G+   AR VFD +++K+     +MI+G++     EDA  +FR+    
Sbjct: 64  HVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHE 123

Query: 244 -VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
            V+ +   Y  +++  + S+   +   EVH  +       DV++G+AL+ MY KCG I++
Sbjct: 124 GVQPNAGTYMIILKACA-SLSALKWGKEVHACIRHGGLESDVRVGTALLRMYGKCGSINE 182

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG- 361
           ARR+FD++   ++ +WT MI  Y ++GN  +A  L   M++   +PN +T++  L+AC  
Sbjct: 183 ARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACAS 242

Query: 362 ------------HA----------------------GLVDKGREIFESME-RDYSMKPKM 386
                       HA                      G +D  R +F+ M+ RD      +
Sbjct: 243 EGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRD------V 296

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSCRLHDDVEMANIAANE 443
             +  M+      G   +A    L+M     KP++ ++ ++L++C     +E        
Sbjct: 297 VSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKIHRH 356

Query: 444 IFK--LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
                L  + R G   AL +  + +G  D    + ++MK+R V+     SW    SGL
Sbjct: 357 ALDSGLEVDVRVG--TALVHMYSKSGSIDDARVVFDRMKVRNVV-----SWNAMISGL 407


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  275 bits (703), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 156/451 (34%), Positives = 250/451 (55%), Gaps = 11/451 (2%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +L  AL    +      G ++H    K+    N  ++  +L ++ KC AL  A  +FD +
Sbjct: 385 TLSGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMM 444

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
            +R   ++N +IA   +NG  EE+L+    ++ S   PD +T+  +LKA   C     L 
Sbjct: 445 ERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKA---CAGRQAL- 500

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
            N G  +H +I+K  +  D  +  ALVD Y K G    A  + D   +K ++   ++ISG
Sbjct: 501 -NTGMEIHTRIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISG 559

Query: 227 FMSQGFVEDAEEIFRKTVE----KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
           F      EDA + F + +E     D   Y A+++  + ++ T     ++H Q+IK     
Sbjct: 560 FSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCA-NLATVGLGKQIHAQIIKQELQS 618

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           DV + S LVDMY+KCG + D++ +F+    ++  TW +M+ GY  +G   +AL+LF  MQ
Sbjct: 619 DVYICSTLVDMYSKCGNMQDSQLMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFESMQ 678

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
              V+PN+ TF+  L AC H GLVDKG   F+ M  +Y + P+ EHY+CMVD+LGR+G +
Sbjct: 679 LVNVKPNHATFVSVLRACAHMGLVDKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRI 738

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
           ++AL  V +MP + ++ +W  LLS C++H +VE+A  A   + +L+  D   A V LSN 
Sbjct: 739 DEALNLVQKMPFEADAVIWRNLLSVCKIHGNVEVAEKATRALLQLDPQD-SSACVLLSNI 797

Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            A AG W +V+E+R+ M+   + K+ GCSW+
Sbjct: 798 YADAGMWGNVSEMRKMMRHNKLKKEPGCSWI 828



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/453 (23%), Positives = 219/453 (48%), Gaps = 56/453 (12%)

Query: 19  HYTLVPPNQTFPP-KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVK 77
           +++ +  NQT PP K++ +  +    +            NS  P  G + HA +   G +
Sbjct: 34  NFSTLAQNQTQPPAKIRTFSHIYQECSKQ----------NSLNP--GKQAHARMIFCGFE 81

Query: 78  PNTNISIKLLILHLKCGALKYAGQMFD-------------------------------EL 106
           P T +S  L+ +++KC  L YA ++FD                               E+
Sbjct: 82  PTTFVSNCLMQMYIKCLYLDYACKVFDKMYLRDVVSYNSIISGYASCGEMDIARKFFYEM 141

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P+R + ++N +I+G+L+NG+  +S+ +  ++   G   D  + +++LKA           
Sbjct: 142 PERDVVSWNSVISGFLQNGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEEC---- 197

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
            ++G  VH  ++K     D V  +AL+  Y K  +   +  VF  + EKN +  ++MI+G
Sbjct: 198 -DMGVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAG 256

Query: 227 FMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
            +      +  E+F++     V     +Y ++    + ++   R   E+H   +K+ F  
Sbjct: 257 CVQNDRNVEGLELFKEMQGVGVGVSQSIYASLFRSCA-ALSALRLGKELHSHALKSAFGS 315

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           D+ +G+A +DMYAKCG++ DA++V   M + ++ ++ ++I GY ++    QAL+ F ++ 
Sbjct: 316 DIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLLL 375

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
           +  +  + +T  GAL+AC       +GR++     +  SM       A ++D+ G+  +L
Sbjct: 376 KTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSNICVANA-ILDMYGKCKAL 434

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVE 435
            +A   + +M E+ ++  W A++++C  + + E
Sbjct: 435 AEASD-LFDMMERRDAVSWNAIIAACEQNGNEE 466



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/404 (23%), Positives = 192/404 (47%), Gaps = 10/404 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+++H  + K G   +      LL ++ KC  L  +  +F ELP++   +++ MIAG ++
Sbjct: 200 GVQVHGLVVKFGFDCDVVTGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQ 259

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N +  E L L +++   G       ++ + ++   C +   L   LG+ +H+  LK    
Sbjct: 260 NDRNVEGLELFKEMQGVGVGVSQSIYASLFRS---CAALSAL--RLGKELHSHALKSAFG 314

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +D ++ TA +D Y K G+ + A+ V   M + ++    ++I G+        A + F+  
Sbjct: 315 SDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSFQLL 374

Query: 244 VEKDIVVYNAMIEGYSISIETARKALE---VHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           ++  +      + G   +  + R  LE   VH   +K++   ++ + +A++DMY KC  +
Sbjct: 375 LKTGLGFDEITLSGALNACASIRGDLEGRQVHGLAVKSISMSNICVANAILDMYGKCKAL 434

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
            +A  +FD M++++  +W ++I    +NGN  + L  F  M    ++P+  T+   L AC
Sbjct: 435 AEASDLFDMMERRDAVSWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKAC 494

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
                ++ G EI   + +   M       A +VD+  + G +E+A K + +  E+     
Sbjct: 495 AGRQALNTGMEIHTRIIKS-GMGFDSFVGAALVDMYCKCGMIEKADK-IHDRTEQKTMVS 552

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464
           W A++S   L    E A+   + + ++  N     Y A+ +T A
Sbjct: 553 WNAIISGFSLLQQSEDAHKFFSRMLEMGVNPDNFTYAAVLDTCA 596



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 49/198 (24%), Positives = 100/198 (50%), Gaps = 10/198 (5%)

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
           L+  C++   ++  DV   ++++  YA CG++D AR+ F  M +++V +W S+I G+ +N
Sbjct: 100 LDYACKVFDKMYLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQN 159

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G   +++++F  M  C V  +  +    L ACG     D G ++   +   +     +  
Sbjct: 160 GECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQV-HGLVVKFGFDCDVVT 218

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
            + ++ +  +   L+ +L    E+PEK N   W+A+++ C  +D     N+   E+FK  
Sbjct: 219 GSALLGMYAKCKRLDDSLSVFSELPEK-NWVSWSAMIAGCVQND----RNVEGLELFK-- 271

Query: 449 ANDRPGAYVALSNTLAAA 466
             +  G  V +S ++ A+
Sbjct: 272 --EMQGVGVGVSQSIYAS 287


>gi|15233584|ref|NP_193218.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274931|sp|O23337.1|PP311_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g14820
 gi|2244839|emb|CAB10261.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268228|emb|CAB78524.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658106|gb|AEE83506.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 722

 Score =  275 bits (702), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 157/466 (33%), Positives = 244/466 (52%), Gaps = 40/466 (8%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           F G+++H    K     +  +    + ++  CG + YA  +FDE+  R +  +N MI  Y
Sbjct: 128 FEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERY 187

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            + G V+E+  L  ++  S   PD      I+  S C R+         R ++  +++ D
Sbjct: 188 CRFGLVDEAFKLFEEMKDSNVMPDEMILCNIV--SACGRTG---NMRYNRAIYEFLIEND 242

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           V+ D  L TALV  Y   G    AR  F  M  +N+  ST+M+SG+   G ++DA+ IF 
Sbjct: 243 VRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFD 302

Query: 242 KTVEKDIVVYNAMIEGYSIS---IETARKALEVHCQLIK--------------------- 277
           +T +KD+V +  MI  Y  S    E  R   E+ C  IK                     
Sbjct: 303 QTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDK 362

Query: 278 ----------NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
                     N    ++ + +AL++MYAKCG +D  R VF+ M ++NV +W+SMI+    
Sbjct: 363 AKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSM 422

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           +G  + AL LF  M++  V+PN VTF+G L  C H+GLV++G++IF SM  +Y++ PK+E
Sbjct: 423 HGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLE 482

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           HY CMVDL GRA  L +AL+ +  MP   N  +W +L+S+CR+H ++E+   AA  I +L
Sbjct: 483 HYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILEL 542

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
              D  GA V +SN  A   +W+ V  +R  M+ + V K+ G S +
Sbjct: 543 EP-DHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRI 587



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/433 (20%), Positives = 201/433 (46%), Gaps = 46/433 (10%)

Query: 38  SLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALK 97
           +L  P+ +T+  + L+      +  +  ++HAHI +T +    N  +  L +      L 
Sbjct: 2   TLPPPIASTAANTILEKLSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLSVSSSSINLS 61

Query: 98  YAGQMFDELPQRTLS-AYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAS 156
           YA  +F  +P    S  +N  +    ++ +   ++   +++   G R D ++F  ILKA 
Sbjct: 62  YALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAV 121

Query: 157 TCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216
           +   +        G  +H    K     D  + T  +D Y   G+ +YAR VFD M  ++
Sbjct: 122 SKVSALFE-----GMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRD 176

Query: 217 VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIV------------------------VYN 252
           V+   +MI  +   G V++A ++F +  + +++                        +Y 
Sbjct: 177 VVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYE 236

Query: 253 AMIEG----------YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
            +IE             +++      +++  +  + +   ++ + +A+V  Y+KCG++DD
Sbjct: 237 FLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDD 296

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC--VQPNYVTFLGALSAC 360
           A+ +FD  ++K++  WT+MI  Y ++  P +AL +F  M  CC  ++P+ V+    +SAC
Sbjct: 297 AQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEM--CCSGIKPDVVSMFSVISAC 354

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            + G++DK + +   +  +  ++ ++     ++++  + G L+       +MP + N   
Sbjct: 355 ANLGILDKAKWVHSCIHVN-GLESELSINNALINMYAKCGGLDATRDVFEKMPRR-NVVS 412

Query: 421 WAALLSSCRLHDD 433
           W++++++  +H +
Sbjct: 413 WSSMINALSMHGE 425



 Score = 52.0 bits (123), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 113/267 (42%), Gaps = 44/267 (16%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +H+ I   G++   +I+  L+ ++ KCG L     +F+++P+R + +++ MI     +G+
Sbjct: 366 VHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGE 425

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
             ++LSL  ++      P+  TF  +L    C  S +                  V+   
Sbjct: 426 ASDALSLFARMKQENVEPNEVTFVGVLYG--CSHSGL------------------VEEGK 465

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
            ++ ++ D Y    K  +   + D+    N++               E  E I    V  
Sbjct: 466 KIFASMTDEYNITPKLEHYGCMVDLFGRANLL--------------REALEVIESMPVAS 511

Query: 247 DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALV---DMYAKCGKIDDA 303
           ++V++ +++    I  E     LE+     K +   +     ALV   ++YA+  + +D 
Sbjct: 512 NVVIWGSLMSACRIHGE-----LELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDV 566

Query: 304 RRVFDHMQQKNVFTWT--SMIDGYGKN 328
           R +   M++KNVF     S ID  GK+
Sbjct: 567 RNIRRVMEEKNVFKEKGLSRIDQNGKS 593


>gi|224065074|ref|XP_002301657.1| predicted protein [Populus trichocarpa]
 gi|222843383|gb|EEE80930.1| predicted protein [Populus trichocarpa]
          Length = 504

 Score =  275 bits (702), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 148/381 (38%), Positives = 228/381 (59%), Gaps = 11/381 (2%)

Query: 117 MIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
           M  GY KNG + E+L +  +++ +   P  + FS  LKA    R        +GR VHAQ
Sbjct: 1   MAIGYSKNGFLREALLVYVEMLWNCMEPGNFAFSTALKACADLRE-----LWVGRGVHAQ 55

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
           ++K     D V+   L+  Y +    +    VFD M E+NV    S+ISGF+ +  + +A
Sbjct: 56  VVKSSEGPDQVVNNGLLRLYTQCECFNEVLKVFDQMPERNVASWNSLISGFVKEDKLGEA 115

Query: 237 EEIFRKTVEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVFFEDVKLGSALVD 292
            ++FR+ ++++ + ++ +     + I     AL    E+H Q++K+    DV + ++LVD
Sbjct: 116 LDVFRR-MQREGMGFSWVTLTTILPICARVTALLSGKEIHAQIVKSARRPDVLVLNSLVD 174

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           MY KCG +D  RR+FD M+ K++ +W +M+ GY  NG    A++LF  M  C ++P+ VT
Sbjct: 175 MYVKCGVVDYGRRLFDGMRSKDLTSWNTMLTGYAINGYMRVAMDLFNEMASCGIRPDDVT 234

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
           F+  LS C HAGL + G+++F  ME D+ + P +EHYAC+VD+LGRAG ++ AL  V  M
Sbjct: 235 FIALLSGCSHAGLTEDGQKLFHRMEMDFGVSPSLEHYACLVDMLGRAGRIDAALVVVKNM 294

Query: 413 PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSV 472
           P K +  +W +LL+SCRLH++V +A   AN +F+L   + PG YV LSN  A AG WDSV
Sbjct: 295 PMKTSGSIWGSLLNSCRLHNEVPLAEAIANRLFELEPYN-PGNYVMLSNIYANAGMWDSV 353

Query: 473 TELREKMKLRGVLKDTGCSWV 493
             +RE M+ R + K+ GCSW+
Sbjct: 354 NMVREMMQTRRIRKEAGCSWI 374



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/282 (26%), Positives = 142/282 (50%), Gaps = 10/282 (3%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +  +AL+   +    + G  +HA + K+   P+  ++  LL L+ +C       ++FD++
Sbjct: 32  AFSTALKACADLRELWVGRGVHAQVVKSSEGPDQVVNNGLLRLYTQCECFNEVLKVFDQM 91

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P+R ++++N +I+G++K  ++ E+L + R++   G      T + IL    C R    L 
Sbjct: 92  PERNVASWNSLISGFVKEDKLGEALDVFRRMQREGMGFSWVTLTTIL--PICARVTALLS 149

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
              G+ +HAQI+K   + D ++  +LVD YVK G   Y R +FD M  K++    +M++G
Sbjct: 150 ---GKEIHAQIVKSARRPDVLVLNSLVDMYVKCGVVDYGRRLFDGMRSKDLTSWNTMLTG 206

Query: 227 FMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
           +   G++  A ++F +     +  D V + A++ G S +  T       H   +      
Sbjct: 207 YAINGYMRVAMDLFNEMASCGIRPDDVTFIALLSGCSHAGLTEDGQKLFHRMEMDFGVSP 266

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT-WTSMID 323
            ++  + LVDM  + G+ID A  V  +M  K   + W S+++
Sbjct: 267 SLEHYACLVDMLGRAGRIDAALVVVKNMPMKTSGSIWGSLLN 308


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  275 bits (702), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 146/441 (33%), Positives = 259/441 (58%), Gaps = 19/441 (4%)

Query: 59  DTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMI 118
           D+   G  IH +I K G+  + ++   L  ++ KCG+L+ +  +F+++P +   ++  MI
Sbjct: 462 DSLSLGRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLEESYTVFEQMPDKDNVSWASMI 521

Query: 119 AGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
            G+ ++   E+++ L R+++    RPD  T +  L   T C +   L +  G+ VH   L
Sbjct: 522 TGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAAL---TACSALHSLEK--GKEVHGYAL 576

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
           +  V  + ++  ALV+ Y K G    AR VFDM+ +K+    +S++SG+   G++EDA  
Sbjct: 577 RARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDALL 636

Query: 239 IFRKTVEKDIVVYNAMIEGYSISIETARKAL--------EVHCQLIKNVFFEDVKLGSAL 290
           +F +    D+      I+ +++S      A+        ++H  + K     +V +GS+L
Sbjct: 637 LFHEIRMADL-----WIDSFTVSSVIGAVAILNSLDIGTQLHACVTKMGLNAEVSVGSSL 691

Query: 291 VDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY 350
           V MY+KCG ID+  +VF+ +++ ++ +WT+MI  Y ++G   +AL+++ +M++   +P+ 
Sbjct: 692 VTMYSKCGSIDECHKVFEQIEKPDLISWTAMIVSYAQHGKGAEALKVYDLMRKEGTKPDS 751

Query: 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410
           VTF+G LSAC H G+V++G     SM ++Y ++P   HYACMVDLLGR+G L++A +F+ 
Sbjct: 752 VTFVGVLSACSHNGMVEEGYSHLNSMAKEYGIEPGYYHYACMVDLLGRSGRLKEAERFIN 811

Query: 411 EMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
            MP +P++ +W  LL++C++H D+E+  +AA  + +L   +  GAYV LSN  A  G W+
Sbjct: 812 NMPIEPDALLWGILLAACKVHGDIELGRLAAKRVIELEPCE-AGAYVTLSNICADMGWWE 870

Query: 471 SVTELREKMKLRGVLKDTGCS 491
            V ++R  M+  GV K+ G S
Sbjct: 871 DVMKIRSLMEGTGVKKEPGWS 891



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 85/358 (23%), Positives = 174/358 (48%), Gaps = 15/358 (4%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G  +   + K G   +  +   ++ L+ KC  +  A + F  +P R + ++  +I+G++
Sbjct: 266 FGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGFV 325

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +      +    +++   GE+ + YT + +L A T      P+       +H+ I K   
Sbjct: 326 QKDDSISAFHFFKEMRKVGEKINNYTITSVLTACT-----EPVMIKEAVQLHSWIFKTGF 380

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVF-DMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
             D  + +AL++ Y K G    +  VF +M   KN+     MIS F   G    A E+F+
Sbjct: 381 YLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQ 440

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
           + +++ +             I++      +HC ++K   F D+ +GS+L  MY+KCG ++
Sbjct: 441 RMLQEGLRPDKFCSSSVLSIIDSLSLGRLIHCYILKIGLFTDISVGSSLFTMYSKCGSLE 500

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           ++  VF+ M  K+  +W SMI G+ ++ +  QA++LF  M    ++P+ +T   AL+AC 
Sbjct: 501 ESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTLTAALTACS 560

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHY----ACMVDLLGRAGSLEQALKFVLEMPEK 415
               ++KG+E+       Y+++ ++         +V++  + G++  A +    +P+K
Sbjct: 561 ALHSLEKGKEV-----HGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDMLPQK 613



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 119/449 (26%), Positives = 210/449 (46%), Gaps = 36/449 (8%)

Query: 2   PNLSRIRSSVFSSTHNRHYTLVPPNQTF-PPKLQNYDSLSNPLTATSLPSALQHYINSDT 60
           P+ + I  ++  S  N++++     + F   +   +D   N  T  S+ SA        +
Sbjct: 108 PHPNVISWNILISGCNQNFSFEDSWRNFCKMRFSGFDP--NQFTYGSVLSACTAL---GS 162

Query: 61  PFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120
           P YG  +++   K G   N  +   ++ L  K  + + A ++F ++    +  +N +I+G
Sbjct: 163 PLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISG 222

Query: 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
            +KN +   +L L  ++      P+ +TFS IL   T C +   L    GR V   ++KC
Sbjct: 223 AVKNRENWVALDLFCQMCCRFFMPNSFTFSSIL---TACAALEEL--EFGRGVQGWVIKC 277

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
               D  + TA++D Y K      A   F  M  +NV+  T++ISGF+ +     A   F
Sbjct: 278 GAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFF 337

Query: 241 ---RKTVEKDIVVYNAMIEGYSI-SIETA-------RKALEVHCQLIKNVFFEDVKLGSA 289
              RK  EK        I  Y+I S+ TA       ++A+++H  + K  F+ D  + SA
Sbjct: 338 KEMRKVGEK--------INNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDSNVSSA 389

Query: 290 LVDMYAKCGKIDDARRVFDHMQQ-KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348
           L++MY+K G +D + RVF  M+  KN+  W  MI  + ++G+  +A+ELF  M +  ++P
Sbjct: 390 LINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRMLQEGLRP 449

Query: 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKF 408
           +       LS      L   GR I   + +   +   +   + +  +  + GSLE++   
Sbjct: 450 DKFCSSSVLSIIDSLSL---GRLIHCYILK-IGLFTDISVGSSLFTMYSKCGSLEESYTV 505

Query: 409 VLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
             +MP+K N   WA++++    HD  E A
Sbjct: 506 FEQMPDKDNVS-WASMITGFSEHDHAEQA 533



 Score =  115 bits (287), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 182/371 (49%), Gaps = 22/371 (5%)

Query: 67  IHAHITKTGV-KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +HAH  KT + + NT ++  L+  + K  ++ +A ++FD+ P   + ++N +I+G  +N 
Sbjct: 67  LHAHFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGCNQNF 126

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             E+S     K+  SG  P+ +T+  +L A T   S  PL    G +V++  LK    ++
Sbjct: 127 SFEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGS--PL---YGELVYSLALKNGFFSN 181

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             +   ++D + K      A  VF  +L +NV+C  ++ISG      V++ E      + 
Sbjct: 182 GYVRAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGA-----VKNRENWVALDLF 236

Query: 246 KDIVVYNAMIEGYSIS-IETARKALE-------VHCQLIKNVFFEDVKLGSALVDMYAKC 297
             +     M   ++ S I TA  ALE       V   +IK    EDV +G+A++D+YAKC
Sbjct: 237 CQMCCRFFMPNSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKC 296

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
             +D A + F  M  +NV +WT++I G+ +  +   A   F  M++   + N  T    L
Sbjct: 297 RDMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVL 356

Query: 358 SACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           +AC    ++ +  ++   + +  + +   +   + ++++  + G ++ + +   EM    
Sbjct: 357 TACTEPVMIKEAVQLHSWIFKTGFYLDSNVS--SALINMYSKIGVVDLSERVFREMESTK 414

Query: 417 NSDVWAALLSS 427
           N  +WA ++S+
Sbjct: 415 NLAMWAVMISA 425



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 81/305 (26%), Positives = 139/305 (45%), Gaps = 23/305 (7%)

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV-KADDVLYTALVDSYVKGGKTSYARI 207
           FS   K+  C   N        +++HA  LK  + +++  +  +L+  Y K     +A  
Sbjct: 50  FSDYTKSGRCTLRNT-------KILHAHFLKTAILQSNTFMTNSLMGWYCKSNSMVHALR 102

Query: 208 VFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIE 263
           +FD     NVI    +ISG       ED+   F K      + +   Y +++   + ++ 
Sbjct: 103 LFDKTPHPNVISWNILISGCNQNFSFEDSWRNFCKMRFSGFDPNQFTYGSVLSACT-ALG 161

Query: 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMID 323
           +      V+   +KN FF +  + + ++D++AK    +DA RVF  +  +NV  W ++I 
Sbjct: 162 SPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIIS 221

Query: 324 GYGKNGNPNQALELFCMMQECC--VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           G  KN     AL+LFC M  CC    PN  TF   L+AC     ++ GR +   + +  +
Sbjct: 222 GAVKNRENWVALDLFCQM--CCRFFMPNSFTFSSILTACAALEELEFGRGVQGWVIKCGA 279

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441
            +      A ++DL  +   ++QA+K  L MP + N   W  ++S     DD    +I+A
Sbjct: 280 GEDVFVGTA-IIDLYAKCRDMDQAVKEFLRMPIR-NVVSWTTIISGFVQKDD----SISA 333

Query: 442 NEIFK 446
              FK
Sbjct: 334 FHFFK 338


>gi|224133790|ref|XP_002327681.1| predicted protein [Populus trichocarpa]
 gi|222836766|gb|EEE75159.1| predicted protein [Populus trichocarpa]
          Length = 654

 Score =  275 bits (702), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 159/473 (33%), Positives = 261/473 (55%), Gaps = 45/473 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLL--ILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           ++HA I   G+  +  +  KL+  +  L      Y   +F+++       YN +I GYL 
Sbjct: 64  QVHARILLNGLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNYPNPFLYNALIRGYLI 123

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
             +++ES      +   G  P  +TF+ + KA   C + + +   LGR +H Q +     
Sbjct: 124 EERLKESTEFYSLMRKEGVVPVSFTFTALFKA---CGAKMDV--GLGRQIHGQTILVGGF 178

Query: 184 ADDV-LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            +D+ +  +++D Y+K G     R VFD M  ++VI  T +IS ++  G +E A E+F  
Sbjct: 179 GEDLHVGNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDG 238

Query: 243 TVEKDIVVYNAMIEGYS-----------------ISIET------------ARKALEVHC 273
              KD+V +  M+ G++                   +ET            A+     + 
Sbjct: 239 LPVKDMVAWTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYA 298

Query: 274 QLIKNVFFED-------VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
             I++V  +        V +GSAL+DMY+KCG + DA RVF  M+++NV++++SMI G+ 
Sbjct: 299 DWIRDVAEKSEFGGKHSVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFA 358

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM 386
            +G  + A++LF  M +  ++PN VTF+G L+AC HAG+V++G +IFE ME+ Y +KP  
Sbjct: 359 MHGRVHDAMKLFDEMVKTEIKPNRVTFIGVLTACSHAGMVEQGWQIFELMEKCYGIKPSA 418

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446
           +HY CMVDLLGRAG L++A + V  MP +P+  VW ALL +CR+H   ++A IAAN +F+
Sbjct: 419 DHYTCMVDLLGRAGRLQEAHELVKTMPIEPHGGVWGALLGACRIHKSPDIAAIAANHLFE 478

Query: 447 LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           L      G Y+ L+N  A+ G+W+ V+ +R+ M+ RG+ K+   SW+ +E G+
Sbjct: 479 LEPYC-IGNYILLANIYASCGRWNDVSTVRKLMRTRGLRKNPAFSWIESEKGM 530


>gi|357510067|ref|XP_003625322.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355500337|gb|AES81540.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 1024

 Score =  275 bits (702), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 167/492 (33%), Positives = 255/492 (51%), Gaps = 41/492 (8%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           + + S   AL+     +T F G  ++  + K G      +   L+  + + G LK A Q+
Sbjct: 255 MDSRSFVFALKACQQFETVFEGESVYCVVWKMGFDCELLVRNGLIHFYAERGLLKNARQV 314

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           FDE   + +  +  MI GY  +   EE++ +   ++ S   P+  T   ++ A   C   
Sbjct: 315 FDESSDKDVVTWTTMIDGYAAHDCSEEAMEVFELMLLSHVEPNEVTLIAVVSA---CSDM 371

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
             L   +G+ VH ++ + +++    L+ AL+D YVK      AR +FD M  K+V   TS
Sbjct: 372 GNL--EMGKRVHEKVEEKNMRCSLSLHNALLDMYVKCDCLVDARELFDRMATKDVYSWTS 429

Query: 223 MISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS--------------------ISI 262
           M++G+   G +E A   F +T  K+ V ++AMI GYS                    + I
Sbjct: 430 MVNGYAKCGDLESARRFFDQTPRKNAVCWSAMIAGYSQNNKPKESLKLFHEMMERGVVPI 489

Query: 263 ETARKALEVHCQLIKNVFFED---------------VKLGSALVDMYAKCGKIDDARRVF 307
           E    ++   C  +  +   D               V L +A+VDMYAKCG ID A  VF
Sbjct: 490 EHTLVSVLSACGQLTCLNLGDWIHQYFVVGKIIPLSVTLENAIVDMYAKCGSIDAATEVF 549

Query: 308 DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367
             M ++N+ +W +MI GY  NG   QA+ +F  M+    +PN +TF+  L+AC H GL+ 
Sbjct: 550 STMPERNLISWNTMIAGYAANGRAKQAINVFDQMRNMGFEPNNITFVSLLTACSHGGLIS 609

Query: 368 KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
           +GRE F++MER Y +KP+  HYACMVDLLGR G LE+A K +  MP +P    W ALL++
Sbjct: 610 EGREYFDNMERKYGIKPERGHYACMVDLLGRTGLLEEAYKLIANMPMQPCEAAWGALLNA 669

Query: 428 CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487
           CR+H +VE+A ++A+ + +L+  D  G YV L+NT A   KW  V  +R  MK +GV K 
Sbjct: 670 CRMHGNVELARLSAHNLLRLDPED-SGIYVLLANTCANDRKWSDVRRVRSLMKDKGVKKI 728

Query: 488 TGCSWVGTESGL 499
            G S +  + G 
Sbjct: 729 PGYSLIEIDGGF 740



 Score = 47.4 bits (111), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 38/79 (48%)

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           A  G +  A  +F+ ++Q N F W +MI GY     P  A   F  M +  V+ +  +F+
Sbjct: 202 AHSGDLHYAHTIFNRVEQPNTFMWNTMIRGYQNARKPIFAFSFFVYMFQLRVEMDSRSFV 261

Query: 355 GALSACGHAGLVDKGREIF 373
            AL AC     V +G  ++
Sbjct: 262 FALKACQQFETVFEGESVY 280


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  275 bits (702), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 158/442 (35%), Positives = 244/442 (55%), Gaps = 18/442 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G   H  +   G   N  I+  L+ +H +  AL  A Q+FDEL +     +  +I+   +
Sbjct: 180 GRIFHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTR 239

Query: 124 NGQVEESLSLVRKLVSS-GERPDGYTFSMILKASTCCRSNVPLPRNLGRM-----VHAQI 177
           N   +E+L     +    G  PDG+TF  +L A            NLGR+     VHA++
Sbjct: 240 NDFFDEALRFFYSMQRDHGMCPDGFTFGTVLTACG----------NLGRLKQGKEVHAKV 289

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
           +      + V+ ++LVD Y K G    ++ +FD M  KN +  ++++ G+   G  +   
Sbjct: 290 ITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVI 349

Query: 238 EIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           +IFRK  + D+  +  ++   +  +   R+  EVHCQ I+   + DV + SALVD+YAKC
Sbjct: 350 QIFRKMEKVDLYCFGTILRTCA-GLAAVRQGKEVHCQYIRKGGWRDVIVESALVDLYAKC 408

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G I+ A+ +FD M  +N+ TW SMI G+ +NG   +AL +F  M +  ++P+Y++F+G L
Sbjct: 409 GCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGIL 468

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            AC H GLVD+GRE F SM +DY +K  +EHY+CMVDLLGRAG LE+A   +     + +
Sbjct: 469 FACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDD 528

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
           S +WAALL +C    + E+A   A  + +L   D   +YV L+N   A G+W+    +R 
Sbjct: 529 SSLWAALLGACTTCTNYEIAERIAKRVMELEP-DYHLSYVLLANVYKAVGRWNDALRIRR 587

Query: 478 KMKLRGVLKDTGCSWVGTESGL 499
            MK RGV K  G SW+ T++ L
Sbjct: 588 LMKDRGVNKMPGKSWIETKNNL 609



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/424 (28%), Positives = 214/424 (50%), Gaps = 27/424 (6%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGA-LKYAGQMFDELPQRTLSAYNYMIAGY 121
           +GL+IHAH+ K+G++ +  +   LL L+ K G       ++FD L  + + ++  MI+GY
Sbjct: 77  HGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGY 136

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           ++ G+   SL L  K+++ G  P+ +T S ++KA   C     L   LGR+ H  +L   
Sbjct: 137 VRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKA---CSELGDL--KLGRIFHGVVLGRG 191

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
             ++ V+ +AL+D + +      AR +FD +LE + IC TS+IS      F ++A   F 
Sbjct: 192 FDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFY 251

Query: 242 KTVEKDIVVYNAMIEGYSI-SIETA-------RKALEVHCQLIKNVFFEDVKLGSALVDM 293
            ++++D   +    +G++  ++ TA       ++  EVH ++I   F  +V + S+LVDM
Sbjct: 252 -SMQRD---HGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDM 307

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           Y KCG + +++R+FD M  KN  +W++++ GY +NG+    +++F  M++     +   F
Sbjct: 308 YGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKMEKV----DLYCF 363

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
              L  C     V +G+E+     R    +  +   A +VDL  + G +E A     +MP
Sbjct: 364 GTILRTCAGLAAVRQGKEVHCQYIRKGGWRDVIVESA-LVDLYAKCGCIEYAQTIFDQMP 422

Query: 414 EKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473
            + N   W +++     +   E A    N++ K     +P  Y++    L A      V 
Sbjct: 423 VR-NLITWNSMIGGFAQNGRGEEALRIFNQMVK--EGIKP-DYISFIGILFACSHRGLVD 478

Query: 474 ELRE 477
           E RE
Sbjct: 479 EGRE 482



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 158/312 (50%), Gaps = 16/312 (5%)

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           K+G++  +L L++ +      P   +   +L AS        L  N G  +HA ++K  +
Sbjct: 36  KSGELSGALQLLKSI-----DPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGL 90

Query: 183 KADDVLYTALVDSYVK-GGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           + D  +  +L+  Y K G      R VFD +  K+VI  TSMISG++  G   ++ E+F 
Sbjct: 91  EFDRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFW 150

Query: 242 KT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           K     VE +    +A+I+  S  +   +     H  ++   F  +  + SAL+DM+ + 
Sbjct: 151 KMLAYGVEPNAFTLSAVIKACS-ELGDLKLGRIFHGVVLGRGFDSNYVIASALIDMHGRN 209

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ-ECCVQPNYVTFLGA 356
             +DDAR++FD + + +   WTS+I    +N   ++AL  F  MQ +  + P+  TF   
Sbjct: 210 CALDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTV 269

Query: 357 LSACGHAGLVDKGREIF-ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
           L+ACG+ G + +G+E+  + +   +     +E  + +VD+ G+ GS+ ++ +    MP K
Sbjct: 270 LTACGNLGRLKQGKEVHAKVITTGFCGNVVVE--SSLVDMYGKCGSVGESQRIFDRMPIK 327

Query: 416 PNSDVWAALLSS 427
            NS  W+ALL  
Sbjct: 328 -NSVSWSALLGG 338


>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1112

 Score =  275 bits (702), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 152/439 (34%), Positives = 256/439 (58%), Gaps = 18/439 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKC---GALKYAGQMFDELPQRTLSAYNYMIAG 120
           G ++H+   ++G+  +   S  L+ ++ KC   G++    ++FD +   ++ ++  +I G
Sbjct: 288 GRQLHSWAIRSGLADDVECS--LVDMYAKCSADGSVDDCRKVFDRMQDHSVMSWTALITG 345

Query: 121 YLKNGQV-EESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
           Y++N  +  E+++L  ++++ G   P+ +TFS   KA      NV  PR +G+ V     
Sbjct: 346 YMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKAC----GNVSDPR-VGKQVLGHAF 400

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
           K  + ++  +  +++  +VK  +   AR  F+ + EKN++   + + G       E A E
Sbjct: 401 KRGLASNSSVSNSVISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEHAFE 460

Query: 239 IFRKTVEKDIVV----YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
           +  +  E+++ V    + +++ G + ++ + RK  ++H Q++K     +  + +AL+ MY
Sbjct: 461 LLSEIAERELGVSAFTFASLLSGVA-NVGSLRKGEQIHSQVLKLGLSCNQPVCNALISMY 519

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           +KCG ID A RVF  M  +NV +WTSMI G+ K+G   + LE F  M +  V+PN VT++
Sbjct: 520 SKCGSIDTASRVFSLMDNRNVISWTSMITGFAKHGFAERVLETFNQMTKEGVKPNEVTYV 579

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             LSAC H GLV +G   F SM  D+ +KPKMEHYACMVDLL RAG L  A +F+  MP 
Sbjct: 580 AILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPF 639

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
           + +  VW   L +CR+H + E+  +AA +I + + N+ P AY+ LSN  A+AGKW+  TE
Sbjct: 640 QADVLVWRTFLGACRVHSNTELGKLAARKILEFDPNE-PAAYIQLSNIYASAGKWEESTE 698

Query: 475 LREKMKLRGVLKDTGCSWV 493
           +R KMK R ++K+ GCSW+
Sbjct: 699 MRRKMKERNLVKEGGCSWI 717



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 181/346 (52%), Gaps = 22/346 (6%)

Query: 42  PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQ 101
           P+ + +  S L+  I +     G  +HA + +  ++P++ +   L+ L+ K G L  A  
Sbjct: 59  PMDSVTFSSLLKSCIRARHFRLGKLVHARLIEFEIEPDSVLYNSLISLYSKSGDLTKAKD 118

Query: 102 MFDEL---PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
           +F+ +    +R + +++ M+A +  NG+  +++ L  + +  G  P+ Y ++ +++A  C
Sbjct: 119 VFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGLVPNDYCYTAVIRA--C 176

Query: 159 CRSNVPLPRNLGRMVHAQILKC-DVKADDVLYTALVDSYVKGGKT-SYARIVFDMMLEKN 216
             S+      +GR++   ++K    ++D  +  +L+D +VKG  +   A  VFD M E N
Sbjct: 177 SNSDFV---GVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELN 233

Query: 217 VICSTSMISGFMSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSISIETARKALEVH 272
           V+  T MI+  M  GF  +A   F   V    E D    +++    +  +E      ++H
Sbjct: 234 VVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACA-ELENLSLGRQLH 292

Query: 273 CQLIKNVFFEDVKLGSALVDMYAKC---GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
              I++   +DV+   +LVDMYAKC   G +DD R+VFD MQ  +V +WT++I GY +N 
Sbjct: 293 SWAIRSGLADDVE--CSLVDMYAKCSADGSVDDCRKVFDRMQDHSVMSWTALITGYMQNC 350

Query: 330 N-PNQALELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREIF 373
           N   +A+ LF  M+ +  V+PN+ TF  A  ACG+      G+++ 
Sbjct: 351 NLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVL 396



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 82/268 (30%), Positives = 139/268 (51%), Gaps = 20/268 (7%)

Query: 117 MIAGYLKNGQVEESLSLVRKLVSSGERP-DGYTFSMILKASTCCRSNVPLPRNLGRMVHA 175
           +I  +L  G +  ++S +  +   G RP D  TFS +LK  +C R+       LG++VHA
Sbjct: 32  LILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLK--SCIRAR---HFRLGKLVHA 86

Query: 176 QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM---LEKNVICSTSMISGFMSQGF 232
           ++++ +++ D VLY +L+  Y K G  + A+ VF+ M    +++V+  ++M++ F + G 
Sbjct: 87  RLIEFEIEPDSVLYNSLISLYSKSGDLTKAKDVFETMGRFGKRDVVSWSAMMACFGNNGR 146

Query: 233 VEDAEEIFRKTVEKDIV----VYNAMIEGYSIS--IETARKALEVHCQLIKNVFFE-DVK 285
             DA ++F + +E  +V     Y A+I   S S  +   R  L     L+K   FE DV 
Sbjct: 147 EFDAIKLFVEFLEMGLVPNDYCYTAVIRACSNSDFVGVGRVILGF---LMKTGHFESDVC 203

Query: 286 LGSALVDMYAKC-GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
           +G +L+DM+ K     ++A +VFD M + NV TWT MI    + G P +A+  F  M   
Sbjct: 204 VGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLS 263

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREI 372
             + +  T     SAC     +  GR++
Sbjct: 264 GFESDKFTLSSVFSACAELENLSLGRQL 291


>gi|345505226|gb|AEN99837.1| chlororespiratory reduction 4, partial [Lobularia maritima]
          Length = 570

 Score =  274 bits (701), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 153/472 (32%), Positives = 244/472 (51%), Gaps = 59/472 (12%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH  +TKT +  +  +   L+ L++KC  L YA Q+FD +PQR   +YN MI GY+K
Sbjct: 104 GMQIHGFLTKTVICSDLFLQNCLIGLYIKCSCLGYARQVFDRMPQRDSVSYNSMIDGYVK 163

Query: 124 NGQVEESLSLV-------RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
            G +E +  L        + L+S      GY                   R  G  + ++
Sbjct: 164 CGLIESARELFDLMPKEKKNLISWNSMIGGYA-----------------QREDGVDIASK 206

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
           +     + D + + +L+D YVK G+   A+ +FD+M  ++V+   +MI G+   GFV  A
Sbjct: 207 LFAEMPEKDLISWNSLIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHKA 266

Query: 237 EEIFRKTVEKDIVVYNAMIEGY---------------------------------SISIE 263
           + +F     +D+V YN+M+ GY                                 S   +
Sbjct: 267 KSLFDVMPHRDVVAYNSMMGGYVQNKYHMEALEVFYDMEKESHLSPDETTLVIVLSAIAQ 326

Query: 264 TAR--KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
             R  KA+++H  +++  F  D KLG AL+DMY+KCG I  A  VF+ ++ K++  W +M
Sbjct: 327 LGRLSKAVDIHLYIVEKRFLLDGKLGVALIDMYSKCGSIQQAMAVFEGIENKSIDHWNAM 386

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           I G   +G    A ++   +++  ++P+Y+TF+G L+AC H+GLV +G   FE M R + 
Sbjct: 387 IGGLAVHGLGEAAFDMLMEIEKRFIKPDYITFVGVLNACSHSGLVKEGLLCFELMRRKHK 446

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441
           ++P+++HY CMVDLL R+GS+E A   + EMP +PN  +W   L++C  H + E   +  
Sbjct: 447 IEPRLQHYGCMVDLLARSGSIELAKHLISEMPIEPNDVIWRTFLNACSHHKEFETRELVV 506

Query: 442 NEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            E   L A   P +YV LSN  A+   W+ V  +R  MK R + K  GCSW+
Sbjct: 507 AENLILQAGYNPSSYVLLSNMYASFEMWEDVRRVRTMMKERKIEKVPGCSWI 558



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 52/186 (27%), Positives = 93/186 (50%), Gaps = 23/186 (12%)

Query: 252 NAMIEGYSISIET--------ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
           N  ++ +S+S+ T        A++ +++H  L K V   D+ L + L+ +Y KC  +  A
Sbjct: 80  NVPVDKFSLSLVTKACSRLGFAKEGMQIHGFLTKTVICSDLFLQNCLIGLYIKCSCLGYA 139

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
           R+VFD M Q++  ++ SMIDGY K G    A ELF +M +   + N +++   +   G+A
Sbjct: 140 RQVFDRMPQRDSVSYNSMIDGYVKCGLIESARELFDLMPK--EKKNLISWNSMIG--GYA 195

Query: 364 GL---VDKGREIFESM-ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
                VD   ++F  M E+D      +  +  ++D   + G +E A      MP + +  
Sbjct: 196 QREDGVDIASKLFAEMPEKD------LISWNSLIDGYVKHGRIEDAKGLFDVMPRR-DVV 248

Query: 420 VWAALL 425
            WA ++
Sbjct: 249 TWATMI 254


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  274 bits (701), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 154/439 (35%), Positives = 254/439 (57%), Gaps = 19/439 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCG---ALKYAGQMFDELPQRTLSAYNYMIAG 120
           GL++H+   + G+  +  +S  L+ ++ K     A+ YA ++F+ +P+  + ++  +I+G
Sbjct: 273 GLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISG 332

Query: 121 YLKNG-QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           Y+++G Q  + ++L  ++++   +P+  T+S ILK+      +     + GR VHA ++K
Sbjct: 333 YVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDH-----DSGRQVHAHVIK 387

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI-CSTSMISGFMSQGFVEDAEE 238
            +  +   +  ALV  Y + G    AR VF+ + E+++I C T        + F  D   
Sbjct: 388 SNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIPCITE------GRDFPLD-HR 440

Query: 239 IFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
           I R  V      + ++I   + S+    K  ++H   +K  F  D  + ++LV MY++CG
Sbjct: 441 IVRMDVGISSSTFASLISA-AASVGMLTKGQQLHAMSLKAGFGSDRFVSNSLVSMYSRCG 499

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            ++DA R F+ ++ +NV +WTSMI G  K+G   +AL LF  M    V+PN VT++  LS
Sbjct: 500 YLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLS 559

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC H GLV +G+E F SM+RD+ + P+MEHYACMVDLL R+G +++AL+F+ EMP K ++
Sbjct: 560 ACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALEFINEMPLKADA 619

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            VW  LL +CR HD++E+  I A  + +L   D P  YV LSN  A AG WD V  +R  
Sbjct: 620 LVWKTLLGACRSHDNIEVGEITAKNVVELEPRD-PAPYVLLSNLYADAGLWDEVARIRSA 678

Query: 479 MKLRGVLKDTGCSWVGTES 497
           M+   + K+TG SW+  E+
Sbjct: 679 MRDNNLNKETGLSWMEVEN 697



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 169/348 (48%), Gaps = 24/348 (6%)

Query: 82  ISIKLLILHLKCGALKYAGQMFDELPQ-RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSS 140
           ++  LL L+ +CGA+  A  +FD +   R + ++  M +   +NG    SL L+ +++ S
Sbjct: 86  VANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLIGEMLES 145

Query: 141 GERPDGYTFSMILKASTCCRSNVPLPRNL----GRMVHAQILKCDVKADDV-LYTALVDS 195
           G  P+ YT         C  ++   P  L    G +V   + K  +   DV + +AL+D 
Sbjct: 146 GLLPNAYTL--------CAAAHACFPHELYCLVGGVVLGLVHKMGLWGTDVAVGSALIDM 197

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVY 251
             + G  + AR VFD ++EK V+  T +IS ++     E+A E+F        E D    
Sbjct: 198 LARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTM 257

Query: 252 NAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG---KIDDARRVFD 308
           ++MI   +  + + R  L++H   ++     D  +   LVDMYAK      +D A +VF+
Sbjct: 258 SSMISACT-ELGSVRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFE 316

Query: 309 HMQQKNVFTWTSMIDGYGKNG-NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367
            M + +V +WT++I GY ++G   N+ + LF  M    ++PN++T+   L +C      D
Sbjct: 317 RMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHD 376

Query: 368 KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            GR++   + +           A +V +   +G +E+A +   ++ E+
Sbjct: 377 SGRQVHAHVIKSNQASAHTVGNA-LVSMYAESGCMEEARRVFNQLYER 423



 Score =  105 bits (262), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 166/352 (47%), Gaps = 26/352 (7%)

Query: 94  GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
           G L  A ++FD L ++T+  +  +I+ Y++    EE++ L    +  G  PD YT S ++
Sbjct: 202 GDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMI 261

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVK---GGKTSYARIVFD 210
            A T   S       LG  +H+  L+  + +D  +   LVD Y K   G    YA  VF+
Sbjct: 262 SACTELGS-----VRLGLQLHSLALRMGLASDACVSCGLVDMYAKSNIGQAMDYANKVFE 316

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDA-----EEIFRKTVEKDIVVYNAMIEGYSISIETA 265
            M + +VI  T++ISG++  G  E+       E+  ++++ + + Y+++++  + SI   
Sbjct: 317 RMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCA-SISDH 375

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
               +VH  +IK+       +G+ALV MYA+ G +++ARRVF+ + ++++    +     
Sbjct: 376 DSGRQVHAHVIKSNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIPCIT----- 430

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
                  +   L   +    V  +  TF   +SA    G++ KG+++  +M         
Sbjct: 431 -----EGRDFPLDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQL-HAMSLKAGFGSD 484

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
                 +V +  R G LE A +   E+ ++ N   W +++S    H   E A
Sbjct: 485 RFVSNSLVSMYSRCGYLEDACRSFNELKDR-NVISWTSMISGLAKHGYAERA 535



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 136/277 (49%), Gaps = 30/277 (10%)

Query: 169 LGRMVHAQILKCDV-KADDVLYTALVDSYVKGGKTSYARIVFDMMLE-KNVICSTSMISG 226
           LGR +H ++L+ D+   D V+  +L+  Y + G  + AR VFD M   ++++  T+M S 
Sbjct: 66  LGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASC 125

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI-SIETARKALEVHCQLIK-------- 277
               G    +  +  + +E  +     +   Y++ +   A    E++C +          
Sbjct: 126 LARNGAERGSLLLIGEMLESGL-----LPNAYTLCAAAHACFPHELYCLVGGVVLGLVHK 180

Query: 278 -NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
             ++  DV +GSAL+DM A+ G +  AR+VFD + +K V  WT +I  Y +     +A+E
Sbjct: 181 MGLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVE 240

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC----M 392
           LF    E   +P+  T    +SAC   G V  G ++        +++  +   AC    +
Sbjct: 241 LFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQL-----HSLALRMGLASDACVSCGL 295

Query: 393 VDLLGRAGSLEQALKFVLEMPEK-PNSDV--WAALLS 426
           VD+  ++ ++ QA+ +  ++ E+ P +DV  W AL+S
Sbjct: 296 VDMYAKS-NIGQAMDYANKVFERMPKNDVISWTALIS 331


>gi|356518302|ref|XP_003527818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 535

 Score =  274 bits (701), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 160/463 (34%), Positives = 255/463 (55%), Gaps = 41/463 (8%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           KIHAHI K  +  +  +  K+L L      + YA  +F +L    + +YN +I  Y  N 
Sbjct: 25  KIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLENPNVFSYNAIIRTYTHNH 84

Query: 126 QVEESLSLVRKLVSS-GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
           +   ++++  +++++    PD +TF  ++K+         L R LG+ VHA + K   K 
Sbjct: 85  KHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGL-----LCRRLGQQVHAHVCKFGPKT 139

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
             +   AL+D Y K G  S A  V++ M E++ +   S+ISG +  G ++ A E+F +  
Sbjct: 140 HAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMP 199

Query: 245 EKDIVVYNAMIEGYS-----------------ISIE-------------TARKALEV--- 271
            + IV +  MI GY+                 + IE                 ALEV   
Sbjct: 200 CRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGKW 259

Query: 272 -HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
            H    K+ F ++  + +ALV+MYAKCG ID+A  +F+ M +K+V +W++MI G   +G 
Sbjct: 260 IHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGLFNQMIEKDVISWSTMIGGLANHGK 319

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
              A+ +F  MQ+  V PN VTF+G LSAC HAGL ++G   F+ M  DY ++P++EHY 
Sbjct: 320 GYAAIRVFEDMQKAGVTPNGVTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQIEHYG 379

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
           C+VDLLGR+G +EQAL  +L+MP +P+S  W +LLSSCR+H ++E+A +A  ++ KL   
Sbjct: 380 CLVDLLGRSGQVEQALDTILKMPMQPDSRTWNSLLSSCRIHHNLEIAVVAMEQLLKLEP- 438

Query: 451 DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           +  G YV L+N  A   KW+ V+ +R+ ++ + + K  GCS +
Sbjct: 439 EESGNYVLLANIYAKLDKWEGVSNVRKLIRSKRIKKTPGCSLI 481



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/392 (23%), Positives = 158/392 (40%), Gaps = 75/392 (19%)

Query: 2   PNLSRIRSSVFSSTHNRHYTLVPP--NQTFPPKLQNYDSLSNPLTATSLPSALQHYINSD 59
           PN+    + + + THN  + L     NQ    K  + D  + P    S    L   +   
Sbjct: 68  PNVFSYNAIIRTYTHNHKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCAGLLCRRL--- 124

Query: 60  TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKC-------------------------- 93
               G ++HAH+ K G K +      L+ ++ KC                          
Sbjct: 125 ----GQQVHAHVCKFGPKTHAITENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLIS 180

Query: 94  -----GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYT 148
                G +K A ++FDE+P RT+ ++  MI GY + G   ++L + R++   G  PD  +
Sbjct: 181 GHVRLGQMKSAREVFDEMPCRTIVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEIS 240

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIV 208
              +L A  C +        +G+ +H    K     +  ++ ALV+ Y K G    A  +
Sbjct: 241 VISVLPA--CAQLGA---LEVGKWIHKYSEKSGFLKNAGVFNALVEMYAKCGCIDEAWGL 295

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKA 268
           F+ M+EK+VI  ++MI G  + G    A  +F + ++K  V  N                
Sbjct: 296 FNQMIEKDVISWSTMIGGLANHGKGYAAIRVF-EDMQKAGVTPNG--------------- 339

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
                     V F  V    A   ++ +  +  D  RV  H++ + +  +  ++D  G++
Sbjct: 340 ----------VTFVGVLSACAHAGLWNEGLRYFDVMRVDYHLEPQ-IEHYGCLVDLLGRS 388

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           G   QAL+    M    +QP+  T+   LS+C
Sbjct: 389 GQVEQALDTILKMP---MQPDSRTWNSLLSSC 417



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 144/348 (41%), Gaps = 63/348 (18%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           + +HA I+K  +   + L T ++D         YA ++F  +   NV    ++I  +   
Sbjct: 24  KKIHAHIVKLSLSQSNFLVTKMLDLCDNLSHVDYATMIFQQLENPNVFSYNAIIRTYTHN 83

Query: 231 GFVEDAEEIFR-----KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
                A  +F      K+   D   +  +I+  +  +   R   +VH  + K        
Sbjct: 84  HKHPLAITVFNQMLTTKSASPDKFTFPFVIKSCA-GLLCRRLGQQVHAHVCKFGPKTHAI 142

Query: 286 LGSALVDMYAKC-------------------------------GKIDDARRVFDHMQQKN 314
             +AL+DMY KC                               G++  AR VFD M  + 
Sbjct: 143 TENALIDMYTKCGDMSGAYQVYEEMTERDAVSWNSLISGHVRLGQMKSAREVFDEMPCRT 202

Query: 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374
           + +WT+MI+GY + G    AL +F  MQ   ++P+ ++ +  L AC   G ++ G+ I +
Sbjct: 203 IVSWTTMINGYARGGCYADALGIFREMQVVGIEPDEISVISVLPACAQLGALEVGKWIHK 262

Query: 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV--WAALL------- 425
             E+   +K     +  +V++  + G +++A     +M EK   DV  W+ ++       
Sbjct: 263 YSEKSGFLK-NAGVFNALVEMYAKCGCIDEAWGLFNQMIEK---DVISWSTMIGGLANHG 318

Query: 426 ---SSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
              ++ R+ +D++ A +  N +           +V + +  A AG W+
Sbjct: 319 KGYAAIRVFEDMQKAGVTPNGV----------TFVGVLSACAHAGLWN 356


>gi|359495698|ref|XP_003635064.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic-like [Vitis vinifera]
          Length = 650

 Score =  274 bits (701), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 171/499 (34%), Positives = 266/499 (53%), Gaps = 55/499 (11%)

Query: 37  DSLSNPLTATSLP-----SALQH--YINSDTPFYGLKIHAHITKTGVKPNTNISIKLLIL 89
           +S SNP +  SL      S LQ   +IN   P     IHA + + G   +  +  +LL  
Sbjct: 36  NSNSNPKSLKSLDQKQIISLLQRSKHINQVLP-----IHAQLIRNGHSQDPFMVFELLRS 90

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149
             KC A+ YA ++F       +  Y  +I G++ +G   +++ L  +++     PD Y  
Sbjct: 91  CSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLM 150

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVF 209
           + ILKA   C S + L    GR VH++ LK  + ++ ++   +++ Y K G+   AR VF
Sbjct: 151 ASILKA---CGSQLALRE--GREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVF 205

Query: 210 DMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL 269
           + M E +V+ ST MIS +  QG VE+A  +F +   KD V + AMI+G+ +  E   +AL
Sbjct: 206 EEMPE-DVVASTVMISSYSDQGLVEEAGAVFSRVRRKDTVCWTAMIDGF-VRNEEMNRAL 263

Query: 270 E-----------------------------------VHCQLIKNVFFEDVKLGSALVDMY 294
           E                                   VH  + K     ++ +G+AL++MY
Sbjct: 264 EAFRGMQGENVRPNEFTIVCVLSACSQLGALEIGRWVHSYMRKFEIELNLFVGNALINMY 323

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           ++CG ID+A+ VFD M+ ++V T+ +MI G   NG   QA+ELF +M    ++P  VTF+
Sbjct: 324 SRCGSIDEAQTVFDEMKDRDVITYNTMISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFV 383

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
           G L+AC H GLVD G +IF SM RDY ++P++EHY CMVDLLGR G LE+A   +  M  
Sbjct: 384 GVLNACSHGGLVDFGFKIFHSMTRDYGVEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKM 443

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
            P+  +   LLS+C++H ++E+    A ++ +       G YV LS+  A++GKW    +
Sbjct: 444 TPDHIMLGTLLSACKMHKNLELGEQVA-KVLEDRGQADSGTYVLLSHVYASSGKWKEAAQ 502

Query: 475 LREKMKLRGVLKDTGCSWV 493
           +R KMK  G+ K+ GCS +
Sbjct: 503 VRAKMKEAGMQKEPGCSSI 521


>gi|357462829|ref|XP_003601696.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490744|gb|AES71947.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  274 bits (701), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 165/491 (33%), Positives = 264/491 (53%), Gaps = 40/491 (8%)

Query: 38  SLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALK 97
           S S+  T  +L S L   +    PF   K+HA I K+G+  +      L+  + KCG LK
Sbjct: 2   SFSHSPTVLALKSQL-FSLGRKNPFIAKKLHAQIIKSGLNHHHPFPKTLIDAYGKCGLLK 60

Query: 98  YAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
            A ++FD LPQ+   A+  +++    +    ++ S+   ++  G +PD + FS ++KA  
Sbjct: 61  DALKLFDALPQQDHVAWATVLSACNLSNLPHKAFSISLPILHEGLQPDHFVFSSLIKA-- 118

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
            C +   +   LG+ +HA+ L      DDV+ ++LVD Y K     Y R VFD + E + 
Sbjct: 119 -CANLGSVHVKLGKQLHARFLLSPFFEDDVVKSSLVDMYAKFELPDYGRAVFDSIFELSS 177

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS----------IETARK 267
           I  T+MISG+   G   +A E+FR++  K++  + A+I G   S          +E  R+
Sbjct: 178 ISWTAMISGYARSGRKLEALELFRESPFKNLYAWTALISGLVQSGNANDALYLFVEMRRE 237

Query: 268 AL-------------------------EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
            +                         +VHC +I   +   + + +ALVDMYAKC  +  
Sbjct: 238 GVSIADPLVLSSVVGACANSAVRELGKQVHCVVITLGYESCLFISNALVDMYAKCSDVVA 297

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           A+ +F  M++K+V +WTS+I G  ++G   +AL L+  M    V+PN VTF+G + AC H
Sbjct: 298 AKYIFCEMRRKDVVSWTSIIVGTAQHGLAEEALTLYDDMVLAGVKPNEVTFVGLIYACSH 357

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
            GLV KGR +F+SM  D+ ++P ++HY C++DL  R+G L++A   +  MP KP+   WA
Sbjct: 358 VGLVSKGRALFKSMVEDFGIRPSLQHYTCLLDLFSRSGHLDEAENLIRTMPVKPDEPTWA 417

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
           ALLS+C+ H + +MA   A+ +  L   D P +Y+ LSN  A AG W++V+ +R+ M ++
Sbjct: 418 ALLSACKHHGNTKMAVRIADHLLDLKPED-PSSYILLSNIYAGAGMWENVSMVRKLMAVK 476

Query: 483 GVLKDTGCSWV 493
            V K  G S V
Sbjct: 477 EVKKVPGYSCV 487


>gi|224108029|ref|XP_002314694.1| predicted protein [Populus trichocarpa]
 gi|222863734|gb|EEF00865.1| predicted protein [Populus trichocarpa]
          Length = 631

 Score =  274 bits (701), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 157/451 (34%), Positives = 242/451 (53%), Gaps = 12/451 (2%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           + P A +       PF G +IHA   K G   +  +      ++ K G    A ++FDE+
Sbjct: 60  TFPCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEM 119

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P R ++ +N  I+  + +G+  +++    +    G  PD  TF   L A    R      
Sbjct: 120 PPRNVAVWNAYISNAVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARC----- 174

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
            +LGR +H  +++   + D  +   ++D Y K  +   A +VF+ M  +N +   +M++ 
Sbjct: 175 LDLGRQLHGLVIRSGFEGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAA 234

Query: 227 FMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
                  E A  +F    ++ +E    + +++I  Y+  I        VH   +K     
Sbjct: 235 CEQNDEKEKACVVFLMGRKEGIELTDYMVSSVISAYA-GISGLEFGRSVHALAVKACVEG 293

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           D+ +GSALVDMY KCG I+D  +VF  M ++N+ +W +MI GY   G+ + A+ LF  MQ
Sbjct: 294 DIFVGSALVDMYGKCGSIEDCEQVFHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQ 353

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
              V  NYVT +  LSAC   G V  G EIFESM   Y ++P  EHYAC+ D+LGRAG +
Sbjct: 354 SEAV-ANYVTLICVLSACSRGGAVKLGNEIFESMRDRYRIEPGAEHYACIADMLGRAGMV 412

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
           E+A +FV +MP +P   VW ALL++CR++ + E+  IAA+ +FKL+  D  G +V LSN 
Sbjct: 413 ERAYEFVQKMPIRPTISVWGALLNACRVYGEPELGKIAADNLFKLDPKD-SGNHVLLSNM 471

Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            AAAG+WD  T +R++MK  G+ K  GCSWV
Sbjct: 472 FAAAGRWDEATLVRKEMKDVGIKKGAGCSWV 502



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 180/385 (46%), Gaps = 23/385 (5%)

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P R +  +  +I+G ++NG    +L    K+     +P+ +TF    KAST     + LP
Sbjct: 19  PTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFTFPCAFKASTA----LCLP 74

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
              G+ +HA  LK     D  +  +  D Y K G    A+ +FD M  +NV    + IS 
Sbjct: 75  -FAGKQIHAIALKLGQINDKFVGCSAFDMYSKTGLKFEAQRLFDEMPPRNVAVWNAYISN 133

Query: 227 FMSQG----FVEDAEEIFRKTVEKDIVVYNAMIEGYSIS--IETARKALEVHCQLIKNVF 280
            +  G     ++   E  R   E D++ + A +   + +  ++  R   ++H  +I++ F
Sbjct: 134 AVLDGRPGKAIDKFIEFRRVGGEPDLITFCAFLNACADARCLDLGR---QLHGLVIRSGF 190

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             DV + + ++D+Y KC +++ A  VF+ M ++N  +W +M+    +N    +A  +F M
Sbjct: 191 EGDVSVANGIIDVYGKCKEVELAEMVFNGMGRRNSVSWCTMVAACEQNDEKEKACVVFLM 250

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
            ++  ++         +SA      ++ GR +  ++     ++  +   + +VD+ G+ G
Sbjct: 251 GRKEGIELTDYMVSSVISAYAGISGLEFGRSV-HALAVKACVEGDIFVGSALVDMYGKCG 309

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
           S+E   +   EMPE+ N   W A++S      DV+MA      +F+   ++    YV L 
Sbjct: 310 SIEDCEQVFHEMPER-NLVSWNAMISGYAHQGDVDMAMT----LFEEMQSEAVANYVTLI 364

Query: 461 NTLAAAGKWDSV---TELREKMKLR 482
             L+A  +  +V    E+ E M+ R
Sbjct: 365 CVLSACSRGGAVKLGNEIFESMRDR 389



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 115/278 (41%), Gaps = 47/278 (16%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           LT   + S +  Y       +G  +HA   K  V+ +  +   L+ ++ KCG+++   Q+
Sbjct: 258 LTDYMVSSVISAYAGISGLEFGRSVHALAVKACVEGDIFVGSALVDMYGKCGSIEDCEQV 317

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           F E+P+R L ++N MI+GY   G V+ +++L  ++ S  E    Y  ++I   S C R  
Sbjct: 318 FHEMPERNLVSWNAMISGYAHQGDVDMAMTLFEEMQS--EAVANYV-TLICVLSACSRGG 374

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY-VKGGKTSYARIVFDMMLEKNVICST 221
                              VK  + ++ ++ D Y ++ G   YA             C  
Sbjct: 375 A------------------VKLGNEIFESMRDRYRIEPGAEHYA-------------CIA 403

Query: 222 SMISGFMSQGFVEDAEEIFRKT-VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVF 280
            M+      G VE A E  +K  +   I V+ A++    +  E      E+      N+F
Sbjct: 404 DMLG---RAGMVERAYEFVQKMPIRPTISVWGALLNACRVYGEP-----ELGKIAADNLF 455

Query: 281 FEDVKLGS---ALVDMYAKCGKIDDARRVFDHMQQKNV 315
             D K       L +M+A  G+ D+A  V   M+   +
Sbjct: 456 KLDPKDSGNHVLLSNMFAAAGRWDEATLVRKEMKDVGI 493



 Score = 42.4 bits (98), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 62/138 (44%), Gaps = 2/138 (1%)

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           MY+K    + A+ +      + V TWT++I G  +NG  + AL  F  M+   ++PN  T
Sbjct: 1   MYSKLDLPNPAQLLLQLTPTRCVVTWTALISGSVQNGYFSSALLYFSKMRRENIKPNDFT 60

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
           F  A  A     L   G++I     +   +  K    +   D+  + G   +A +   EM
Sbjct: 61  FPCAFKASTALCLPFAGKQIHAIALKLGQINDKFVGCSAF-DMYSKTGLKFEAQRLFDEM 119

Query: 413 PEKPNSDVWAALLSSCRL 430
           P + N  VW A +S+  L
Sbjct: 120 PPR-NVAVWNAYISNAVL 136


>gi|345505218|gb|AEN99833.1| chlororespiratory reduction 4 [Crucihimalaya wallichii]
          Length = 617

 Score =  274 bits (701), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 154/472 (32%), Positives = 246/472 (52%), Gaps = 60/472 (12%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH  + KTG+  +  +   L+ L+LKCG L +A Q+FD +PQR   +YN MI GY+K
Sbjct: 144 GMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVK 203

Query: 124 NGQVEESLSL-------VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
            G  E +  L       ++ L+S      GY       A T          + G  + ++
Sbjct: 204 CGSTESARELFDLMPEEMKNLISWNSMISGY-------AQT----------SDGVDIASK 246

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
           +       D + + +++D YVK G+   A+ +FD+M  ++V+  ++MI G+   GFV  A
Sbjct: 247 LFSEMPDKDLISWNSMIDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKLGFVHQA 306

Query: 237 EEIFRKTVEKDIVVYNAMIEGY---------------------------------SISIE 263
           + +F +   +D+V YN+MI GY                                 S   +
Sbjct: 307 KTLFDQMPHRDVVSYNSMIAGYVQNRYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQ 366

Query: 264 TAR--KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
             R  KA+++H  +++  FF   KLG AL+DMY+KCG I  A  VF  ++ K++  W +M
Sbjct: 367 LGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQHAMLVFKGIENKSIDHWNAM 426

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           I G   +G    A ++   ++   ++P+ +TF+G L+AC H+GLV +G   FE M R + 
Sbjct: 427 IGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGLLNACSHSGLVKEGLLCFELMRRKHK 486

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441
           ++P+++HY CMVD+L R+GS+E A   + EMP +PN  +W   L++C  H + E   + A
Sbjct: 487 IEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLAACNHHKEFETGELVA 546

Query: 442 NEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             +    A   P +YV LSN  A+ GKW  V  +R  MK R + K  GCSW+
Sbjct: 547 KHLI-WEAGYNPSSYVLLSNLYASFGKWKDVRRIRTIMKERKIEKVPGCSWI 597



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 117/480 (24%), Positives = 218/480 (45%), Gaps = 70/480 (14%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHL---KCGALKYAGQMFDELPQRTLSA--------- 113
           KIHA +   G   N N++ ++++      +   +++A  +F E   R+ S          
Sbjct: 32  KIHARLVTNGFIKNPNLTTRIVLAFAASRRPYXVEFARFVFHEYXIRSFSPGGGDXEDXY 91

Query: 114 -YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRM 172
            +N +I  +        +L L   ++ +G   D ++ S++LKA  C R  +      G  
Sbjct: 92  LWNAVIKSHSHGTDPRRALLLFCLMLENGVSVDKFSLSLVLKA--CSRLGLV---KEGMQ 146

Query: 173 VHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGF 232
           +H  + K  + +D  L   L+  Y+K G   +AR +FD M +++ +   SMI G++  G 
Sbjct: 147 IHGFLKKTGLWSDLFLQNCLIGLYLKCGWLGFARQIFDRMPQRDSVSYNSMIDGYVKCGS 206

Query: 233 VEDAEEIFRKTVE--KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSAL 290
            E A E+F    E  K+++ +N+MI GY+         +++  +L   +  +D+   +++
Sbjct: 207 TESARELFDLMPEEMKNLISWNSMISGYA----QTSDGVDIASKLFSEMPDKDLISWNSM 262

Query: 291 VDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ----------------- 333
           +D Y K G+I+DA+ +FD M +++V TW++MIDGY K G  +Q                 
Sbjct: 263 IDGYVKHGRIEDAKYLFDVMPRRDVVTWSTMIDGYAKLGFVHQAKTLFDQMPHRDVVSYN 322

Query: 334 --------------ALELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREI-FESME 377
                         ALE+F  M +E  + P+  T +  LSA    G + K  ++    +E
Sbjct: 323 SMIAGYVQNRYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVE 382

Query: 378 RDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           + + +  K+     ++D+  + GS++ A+  V +  E  + D W A++    +H   E A
Sbjct: 383 KQFFLGGKLG--VALIDMYSKCGSIQHAM-LVFKGIENKSIDHWNAMIGGLAIHGLGESA 439

Query: 438 NIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE-------LREKMKLRGVLKDTGC 490
                +I + +       +V L N  + +G    V E       +R K K+   L+  GC
Sbjct: 440 FDMLLQIERRSIKPDDITFVGLLNACSHSGL---VKEGLLCFELMRRKHKIEPRLQHYGC 496


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  274 bits (700), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 157/442 (35%), Positives = 250/442 (56%), Gaps = 13/442 (2%)

Query: 57  NSDTPFYGLKIHAHITKTG-VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYN 115
           N  T   G  +H++  K   +      +  LL ++ KCG L  A ++F+ + ++T+ ++ 
Sbjct: 364 NIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWT 423

Query: 116 YMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA 175
            MI GY++ G  + ++ L  ++ S G  PD Y  + IL A   C  N  L    G++VH 
Sbjct: 424 SMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNA---CAINGNLKS--GKIVHD 478

Query: 176 QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
            I + +++ +  +  AL D Y K G    A  VF  M +K+VI   +MI G+       +
Sbjct: 479 YIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNE 538

Query: 236 AEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALV 291
           A  +F    R++      V  A I     S+    K  E+H   ++N + ED  + +A+V
Sbjct: 539 ALTLFAEMQRESKPDGTTV--ACILPACASLAALDKGREIHGYALRNGYSEDKYVTNAVV 596

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
           DMY KCG +  AR +FD +  K++ +WT MI GYG +G  ++A+  F  M+   ++P+ V
Sbjct: 597 DMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEV 656

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
           +F+  L AC H+GL+D+G +IF  M+++  ++P +EHYACMVDLL R G+L +A KF+  
Sbjct: 657 SFISILYACSHSGLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKA 716

Query: 412 MPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471
           MP KP++ +W ALL  CR+H DV++A   A  IF+L   +  G YV L+N  A A KW+ 
Sbjct: 717 MPIKPDATIWGALLCGCRIHHDVKLAEKVAERIFELEP-ENTGYYVLLANIYAEAEKWEE 775

Query: 472 VTELREKMKLRGVLKDTGCSWV 493
           V +LR+K+  RG+ K+ GCSW+
Sbjct: 776 VQKLRKKIGQRGLKKNPGCSWI 797



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 108/358 (30%), Positives = 187/358 (52%), Gaps = 14/358 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++ + I  +GV  +  + +KL+ +++KCG LK    +FD+L +  +  +N MI+ Y  
Sbjct: 169 GRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSG 228

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G   ES++L ++++  G +P+ YTFS ILK    C + V      GR VH  I K    
Sbjct: 229 SGNYGESINLFKQMLELGIKPNSYTFSSILK----CFAAVARVEE-GRQVHGLICKLGFN 283

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           + + +  +L+  Y  G K   A+ +FD + +++VI   SMISG++  G  +   EIF K 
Sbjct: 284 SYNTVVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKNGLDDRGIEIFIKM 343

Query: 244 ----VEKDI-VVYNAMIEGYSISIETARKALEVHCQLIKNVFFE-DVKLGSALVDMYAKC 297
               V+ D+  + N  +   +I      K L  H   IK    + +V+  + L+DMY+KC
Sbjct: 344 LVFGVDIDLATMVNVFVACANIGTLLLGKVL--HSYSIKAATLDREVRFNNTLLDMYSKC 401

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G ++ A RVF+ M +K V +WTSMI GY + G  + A++LF  M+   V P+       L
Sbjct: 402 GDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSIL 461

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
           +AC   G +  G+ + + + R+ +++        + D+  + GS++ A      M +K
Sbjct: 462 NACAINGNLKSGKIVHDYI-RENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKK 518


>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Vitis vinifera]
          Length = 847

 Score =  274 bits (700), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 150/429 (34%), Positives = 245/429 (57%), Gaps = 11/429 (2%)

Query: 75  GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV 134
           G +P+    + +L+  +K G ++   QMFD +   +LS++N +++GY +N   +E++ L 
Sbjct: 348 GFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLF 407

Query: 135 RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVD 194
           R++      PD  T ++IL +     + + L    GR VHA   K   + D  L + L+ 
Sbjct: 408 REMQFRSVHPDRTTLAIILSS----LAGMMLLEG-GRQVHAVSQKAVFRTDIYLASGLIG 462

Query: 195 SYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN-- 252
            Y K GK   A+ +FD + E +++C  SM++G       ++A   F+K  EK +      
Sbjct: 463 MYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFS 522

Query: 253 -AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311
            A +      + +  +  +VH Q+ +  +  D  +GSAL+DMY+KCG +D AR VFD M 
Sbjct: 523 YATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMML 582

Query: 312 QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371
            KN  TW  MI GY +NG  ++A+ L+  M     +P+ +TF+  L+AC H+GLVD G +
Sbjct: 583 GKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIK 642

Query: 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           IF SM++++ ++P ++HY C++D LGRAG L +A   + +MP K +  +W  LLSSCR++
Sbjct: 643 IFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRVY 702

Query: 432 DDVEMANIAANEIFKLN-ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGC 490
            DV +A  AA E+F L+  N  P  YV L+N  ++ G+WD    +RE M    V+KD G 
Sbjct: 703 ADVSLARRAAEELFHLDPQNSAP--YVLLANIYSSLGRWDDAKAVRELMSYNQVVKDPGY 760

Query: 491 SWVGTESGL 499
           SW+  ++G+
Sbjct: 761 SWIEHKNGM 769



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 106/433 (24%), Positives = 193/433 (44%), Gaps = 61/433 (14%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
           T L S LQ  I+      G  IHAH+ ++ +  +T +S +L+  + KC A+  + ++FD+
Sbjct: 6   TYLASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQ 65

Query: 106 LPQRTLSAYNYMIAGYLK-------------------------------NGQVEESLSLV 134
           +P+R +  +N ++  Y K                               NG  +++L + 
Sbjct: 66  MPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVY 125

Query: 135 RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVD 194
            ++   G  P  +T + +L A   C + V +    GR  H   +K  +  +  +  AL+ 
Sbjct: 126 YRMSREGFVPTHFTLASVLSA---CGALVDV--ECGRRCHGISIKIGLDNNIYVGNALLG 180

Query: 195 SYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAM 254
            Y K      A   F  + E N +  T+M+ G      V +A  +FR  +   I V +  
Sbjct: 181 MYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVS 240

Query: 255 IEGY----------SISIETARKAL-------EVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           +                +  +   L       +VHC  IK+ F  D+ L ++L+DMYAK 
Sbjct: 241 LSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKN 300

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G +D A  +F +M + +V +W  MI GYG+    ++A+E    MQ    +P+ +T++  L
Sbjct: 301 GNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNML 360

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK-- 415
            AC  +G ++ GR++F+ M       P +  +  ++    +  + ++A+K   EM  +  
Sbjct: 361 VACIKSGDIEAGRQMFDGMS-----SPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSV 415

Query: 416 -PNSDVWAALLSS 427
            P+    A +LSS
Sbjct: 416 HPDRTTLAIILSS 428



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 125/276 (45%), Gaps = 42/276 (15%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA   K   + +  ++  L+ ++ KCG ++ A ++FD + +  +  +N M+AG   
Sbjct: 438 GRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSL 497

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N   +E+ +  +K+   G  P  ++++ +L   +CC     L +  GR VH+QI +    
Sbjct: 498 NSLDKEAFTFFKKMREKGMFPSQFSYATVL---SCCAKLSSLSQ--GRQVHSQIAREGYM 552

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  + +AL+D Y K G    AR VFDMML KN +    MI G+   G  ++A       
Sbjct: 553 NDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEA------- 605

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
               +++Y  MI            A+   C                     +  G +D  
Sbjct: 606 ----VLLYEDMIGSGEKPDGITFVAVLTAC---------------------SHSGLVDTG 640

Query: 304 RRVFDHMQQKN-----VFTWTSMIDGYGKNGNPNQA 334
            ++F+ MQQ++     V  +T +ID  G+ G  ++A
Sbjct: 641 IKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEA 676



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 77/149 (51%), Gaps = 4/149 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H+ I + G   +  +   L+ ++ KCG +  A  +FD +  +    +N MI GY +
Sbjct: 539 GRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQ 598

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  +E++ L   ++ SGE+PDG TF  +L   T C S+  L     ++ ++   +  V+
Sbjct: 599 NGCGDEAVLLYEDMIGSGEKPDGITFVAVL---TAC-SHSGLVDTGIKIFNSMQQEHGVE 654

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMM 212
                YT ++DS  + G+   A ++ D M
Sbjct: 655 PLVDHYTCIIDSLGRAGRLHEAEVLIDKM 683


>gi|345505220|gb|AEN99834.1| chlororespiratory reduction 4 [Draba nemorosa]
          Length = 612

 Score =  274 bits (700), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 246/465 (52%), Gaps = 46/465 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH  + KTG+  +  +   L+ L++KCG L YA Q+FD +P+R   +YN MI GY+K
Sbjct: 140 GMQIHGFLRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDSVSYNSMIDGYVK 199

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G +E +  L   +    +    + F +   A           R  G  V  ++     +
Sbjct: 200 CGMIESARGLFDLMPKEKKNLISWNFMISGYAQ----------RADGVNVAKKLFDEMPE 249

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D + + +L+D YVK G+   A+ +F+ M +++V+   +M+ G+   GFV  A+ +F + 
Sbjct: 250 KDLISWNSLIDGYVKHGRMEDAKSLFNKMPKRDVVTWATMVDGYAKLGFVHQAKSLFDRM 309

Query: 244 VEKDIVVYNAMIEGY--------SISI-------------ETA--------------RKA 268
             +D+V YN+MI GY        +I I             ET                KA
Sbjct: 310 PLRDVVAYNSMITGYVQNRYHKEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKA 369

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
           +++H  ++ N F    KLG AL+D Y+KCG I  + RVF+ ++ K++  W +MI G   +
Sbjct: 370 VDIHLYIMDNKFRLGGKLGVALIDTYSKCGSIQKSMRVFEEIENKSIDHWNAMIGGLAIH 429

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G    A ++   +++  ++P+ +TF+G L+AC H+GLV +G   FE M R + ++PK++H
Sbjct: 430 GLGESAFDMLLQIEKRSIKPDDITFIGVLNACSHSGLVKEGLLCFELMRRKHKIEPKLQH 489

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
           Y CMVD+L R+GS+E A   + EMP +PN  +W   L++C  H + E   + A  +F L 
Sbjct: 490 YGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSNHKEFETGELVAKHLF-LQ 548

Query: 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
               P ++V LSN  A+ G W  V  +R  MK R + K  GCSW+
Sbjct: 549 GGYNPSSFVLLSNMYASFGMWKEVRRVRTTMKERKLRKIPGCSWI 593



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 113/476 (23%), Positives = 210/476 (44%), Gaps = 66/476 (13%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHL---KCGALKYAGQMFDELPQRTLS------AYNY 116
           KIHA +   G   N N++ ++++      +    ++A  +F E    +         +N 
Sbjct: 32  KIHARLITNGFIKNPNLTTRIVLDFADSRRSYLAEFARFVFHEYHVCSNGDFEDPFLWNA 91

Query: 117 MIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
           +I  +       ++L L   ++ +G   D ++ S++LKA  C R         G  +H  
Sbjct: 92  VIKSHSHGLDPRKALLLFCLMLETGVSVDKFSLSLVLKA--CSRLGFV---KEGMQIHGF 146

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
           + K  + +D  L   L+  Y+K G   YAR VFD M  ++ +   SMI G++  G +E A
Sbjct: 147 LRKTGIWSDLYLQNCLIGLYIKCGCLGYARQVFDRMPRRDSVSYNSMIDGYVKCGMIESA 206

Query: 237 EEIF--RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
             +F      +K+++ +N MI GY+   +     + V  +L   +  +D+   ++L+D Y
Sbjct: 207 RGLFDLMPKEKKNLISWNFMISGYAQRAD----GVNVAKKLFDEMPEKDLISWNSLIDGY 262

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM------------- 341
            K G+++DA+ +F+ M +++V TW +M+DGY K G  +QA  LF  M             
Sbjct: 263 VKHGRMEDAKSLFNKMPKRDVVTWATMVDGYAKLGFVHQAKSLFDRMPLRDVVAYNSMIT 322

Query: 342 -------------------QECCVQPNYVTFLGALSACGHAGLVDKGREI-FESMERDYS 381
                              +E  + P+  T +  LSA    G + K  +I    M+  + 
Sbjct: 323 GYVQNRYHKEAIGIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAVDIHLYIMDNKFR 382

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441
           +  K+     ++D   + GS++++++ V E  E  + D W A++    +H   E A    
Sbjct: 383 LGGKLG--VALIDTYSKCGSIQKSMR-VFEEIENKSIDHWNAMIGGLAIHGLGESAFDML 439

Query: 442 NEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE-------LREKMKLRGVLKDTGC 490
            +I K +       ++ + N  + +G    V E       +R K K+   L+  GC
Sbjct: 440 LQIEKRSIKPDDITFIGVLNACSHSG---LVKEGLLCFELMRRKHKIEPKLQHYGC 492


>gi|345505232|gb|AEN99840.1| chlororespiratory reduction 4, partial [Olimarabidopsis pumila]
          Length = 579

 Score =  274 bits (700), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 153/472 (32%), Positives = 248/472 (52%), Gaps = 60/472 (12%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           GL+IH  + KTG+  +  +   L+ L+LKCG L +A Q+FD +PQR   +YN MI GY+K
Sbjct: 106 GLQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVK 165

Query: 124 NGQVEESLSL-------VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
            G +E +  L       ++ L+S      GY       A T          + G  + ++
Sbjct: 166 CGSIESASELFDLMPREMKNLISWNSLISGY-------AQT----------SEGVDIASK 208

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
           +     + D + + +++D YVK G+   A+ +FDM+  ++V+   +MI G+   GFV  A
Sbjct: 209 LFAEMPEKDLISWNSMIDGYVKHGRIEDAKDLFDMVPRRDVVTWATMIDGYAKLGFVHQA 268

Query: 237 EEIFRKTVEKDIVVYNAMIEGY---------------------------------SISIE 263
           + +F +   +D+V YN+M+ GY                                 S   +
Sbjct: 269 KTLFDQMPHRDVVAYNSMMAGYVQNRFHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQ 328

Query: 264 TAR--KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
             R  KA+++H  +++  F    KLG AL+DMY+KCG I  A  VF+ ++ K++  W +M
Sbjct: 329 LGRLSKAMDMHLYIVEKQFLLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAM 388

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           I G   +G    A ++   ++   ++P+ +TF+G L+AC H+GLV +G   FE M R + 
Sbjct: 389 IGGLAIHGLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHK 448

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441
           ++P+++HY CMVD+L R+GS+E A   + EMP +PN  +W   L++C  H + E   + A
Sbjct: 449 IEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVA 508

Query: 442 NEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             +  L A+  P +YV LSN  A+ G W  V  +R  MK R + K  GCSW+
Sbjct: 509 KHLI-LQADYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWI 559



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 114/477 (23%), Positives = 212/477 (44%), Gaps = 74/477 (15%)

Query: 68  HAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNY----------- 116
           HA + KTG+  N+N++ + ++L        Y      E  +     Y+Y           
Sbjct: 2   HARLIKTGIIKNSNLTTR-IVLAFAASPRPYLA----EFARFVFHEYHYGGEVEDPYLWN 56

Query: 117 -MIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA 175
            MI  +        +L L   ++  G   D ++ S+++KA  C R         G  +H 
Sbjct: 57  AMIKSHSHGTDPRRALLLFCLMLEIGVPVDKFSLSLVMKA--CSRLGFV---KGGLQIHG 111

Query: 176 QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
            + K  + +D  L   L+  Y+K G   +AR +FD M +++ +   SMI G++  G +E 
Sbjct: 112 FLKKTGLWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGSIES 171

Query: 236 AEEIFRKTVE--KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDM 293
           A E+F       K+++ +N++I GY+ + E     +++  +L   +  +D+   ++++D 
Sbjct: 172 ASELFDLMPREMKNLISWNSLISGYAQTSE----GVDIASKLFAEMPEKDLISWNSMIDG 227

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ-------------------- 333
           Y K G+I+DA+ +FD + +++V TW +MIDGY K G  +Q                    
Sbjct: 228 YVKHGRIEDAKDLFDMVPRRDVVTWATMIDGYAKLGFVHQAKTLFDQMPHRDVVAYNSMM 287

Query: 334 -----------ALELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREI-FESMERDY 380
                      ALE+F  M +E  + P+  T +  LSA    G + K  ++    +E+ +
Sbjct: 288 AGYVQNRFHMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQF 347

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIA 440
            +  K+     ++D+  + GS++ A+  V E  E  + D W A++    +H   E A   
Sbjct: 348 LLGGKLG--VALIDMYSKCGSIQHAM-LVFEGIENKSIDHWNAMIGGLAIHGLGESAFDM 404

Query: 441 ANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE-------LREKMKLRGVLKDTGC 490
             +I + +       +V + N  + +G    V E       +R K K+   L+  GC
Sbjct: 405 LLQIERRSIKPDDITFVGVLNACSHSGL---VKEGLLCFELMRRKHKIEPRLQHYGC 458


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  274 bits (700), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 158/476 (33%), Positives = 257/476 (53%), Gaps = 30/476 (6%)

Query: 22  LVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTN 81
           L+P   T+P  L+         T TSL  AL           G +IH  + K+G + N  
Sbjct: 411 LMPNQYTYPSILR---------TCTSL-GALD---------LGEQIHTQVIKSGFQFNVY 451

Query: 82  ISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG 141
           +   L+ ++ K G L  A  +   L +  + ++  MIAGY ++    E+L L +++ + G
Sbjct: 452 VCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQG 511

Query: 142 ERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK 201
            R D   FS  + A    ++      N G+ +HAQ        D  +  ALV  Y + G+
Sbjct: 512 IRSDNIGFSSAISACAGIQA-----LNQGQQIHAQSYISGYSEDLSIGNALVSLYARCGR 566

Query: 202 TSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEG 257
              A + F+ +  K+ I   ++ISGF   G  E+A ++F +     VE ++  + + +  
Sbjct: 567 AQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSA 626

Query: 258 YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT 317
            + +    ++  ++H  +IK  +  + +  + L+ +Y+KCG I+DA+R F  M +KNV +
Sbjct: 627 -TANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMPEKNVVS 685

Query: 318 WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377
           W +MI GY ++G  ++A+ LF  M++  + PN+VTF+G LSAC H GLV++G   F SM 
Sbjct: 686 WNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGLSYFRSMS 745

Query: 378 RDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           +++ + PK EHY C+VDLLGRA  L  A +F+ EMP +P++ +W  LLS+C +H ++E+ 
Sbjct: 746 KEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTVHKNIEIG 805

Query: 438 NIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             AA  + +L   D    YV LSN  A +GKWD     R+ MK RGV K+ G SW+
Sbjct: 806 EFAARHLLELEPED-SATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRSWI 860



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 99/374 (26%), Positives = 195/374 (52%), Gaps = 12/374 (3%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           + G ++H+++ K G+  +  I   LL L++KC  ++ A + F       +  +N M+  Y
Sbjct: 331 YKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAY 390

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            + G + ES  +  ++   G  P+ YT+  IL+    C S   L  +LG  +H Q++K  
Sbjct: 391 GQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRT---CTSLGAL--DLGEQIHTQVIKSG 445

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
            + +  + + L+D Y K G+   AR +   + E++V+  T+MI+G+       +A ++F+
Sbjct: 446 FQFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQ 505

Query: 242 ----KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
               + +  D + +++ I   +  I+   +  ++H Q   + + ED+ +G+ALV +YA+C
Sbjct: 506 EMENQGIRSDNIGFSSAISACA-GIQALNQGQQIHAQSYISGYSEDLSIGNALVSLYARC 564

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G+  DA   F+ +  K+  +W ++I G+ ++G+  +AL++F  M +  V+ N  TF  A+
Sbjct: 565 GRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAV 624

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           SA  +   + +G++I   M +      + E    ++ L  + GS+E A +   EMPEK N
Sbjct: 625 SATANTANIKQGKQIHAMMIKT-GYDSETEASNVLITLYSKCGSIEDAKREFFEMPEK-N 682

Query: 418 SDVWAALLSSCRLH 431
              W A+++    H
Sbjct: 683 VVSWNAMITGYSQH 696



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 93/374 (24%), Positives = 187/374 (50%), Gaps = 11/374 (2%)

Query: 56  INSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYN 115
            NS +     K+HA I K+G      +  +L+ ++L  G +  A ++FD++P   +S +N
Sbjct: 21  FNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWN 80

Query: 116 YMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA 175
            +I+G L      + L L   +++    PD  TF+ +L+A +  ++    P  +   +HA
Sbjct: 81  KVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGGKA----PFQVTEQIHA 136

Query: 176 QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
           +I+     +  ++   L+D Y K G    A++VF+ +  K+ +   +MISG    G  ++
Sbjct: 137 KIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDE 196

Query: 236 AEEIFRKTVEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALV 291
           A  +F +  +  ++    V+++++   +  IE  +   ++H  ++K     +  + +ALV
Sbjct: 197 AILLFCQMHKSAVIPTPYVFSSVLSACT-KIELFKLGEQLHGFIVKWGLSSETFVCNALV 255

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
            +Y++ G +  A ++F  M +++  ++ S+I G  + G  ++AL+LF  MQ  C++P+ V
Sbjct: 256 TLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCV 315

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
           T    LSAC   G   KG+++  S      M   +     ++DL  +   +E A ++ L 
Sbjct: 316 TVASLLSACASVGAGYKGKQL-HSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFL- 373

Query: 412 MPEKPNSDVWAALL 425
             E  N  +W  +L
Sbjct: 374 TTETENVVLWNVML 387



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/373 (26%), Positives = 179/373 (47%), Gaps = 16/373 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IHA I   G   +  +   L+ L+ K G +  A  +F+ L  +   ++  MI+G  +NG
Sbjct: 133 QIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNG 192

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           + +E++ L  ++  S   P  Y FS +L A T     + L + LG  +H  I+K  + ++
Sbjct: 193 REDEAILLFCQMHKSAVIPTPYVFSSVLSACT----KIELFK-LGEQLHGFIVKWGLSSE 247

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT-- 243
             +  ALV  Y + G    A  +F  M  ++ I   S+ISG   +GF + A ++F K   
Sbjct: 248 TFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQL 307

Query: 244 --VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
             ++ D V   +++   + S+    K  ++H  +IK     D+ +  +L+D+Y KC  I+
Sbjct: 308 DCMKPDCVTVASLLSACA-SVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIE 366

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            A   F   + +NV  W  M+  YG+ GN +++  +F  MQ   + PN  T+   L  C 
Sbjct: 367 TAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCT 426

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYAC--MVDLLGRAGSLEQALKFVLEMPEKPNSD 419
             G +D G +I   + +      +   Y C  ++D+  + G L+ A + +L+   + +  
Sbjct: 427 SLGALDLGEQIHTQVIKS---GFQFNVYVCSVLIDMYAKHGELDTA-RGILQRLREEDVV 482

Query: 420 VWAALLSSCRLHD 432
            W A+++    HD
Sbjct: 483 SWTAMIAGYTQHD 495



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/197 (27%), Positives = 93/197 (47%), Gaps = 24/197 (12%)

Query: 241 RKTVEKDIVVYNAMIEG--YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
            + +  ++  Y  + EG   S S+  A+K   +H ++ K+ F  +  LGS L+D+Y   G
Sbjct: 3   ERGIRANVQTYLWLFEGCFNSGSLLDAKK---LHARIFKSGFDGEDVLGSRLIDIYLAHG 59

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           ++D+A ++FD +   NV  W  +I G       +Q L LF +M    V P+  TF   L 
Sbjct: 60  EVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLR 119

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYA-------C--MVDLLGRAGSLEQALKFV 409
           AC        G+  F+  E+   +  K+ H+        C  ++DL  + G ++ A K V
Sbjct: 120 AC------SGGKAPFQVTEQ---IHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLA-KLV 169

Query: 410 LEMPEKPNSDVWAALLS 426
            E     +S  W A++S
Sbjct: 170 FERLFLKDSVSWVAMIS 186


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  274 bits (700), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 159/434 (36%), Positives = 243/434 (55%), Gaps = 13/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IHA I K     +  ++  LL ++ KCG++  A  +FDE+P R L ++N MI G++K
Sbjct: 219 GQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVK 278

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N     ++ + R+++S G  PD  + S +L A   C   V L  + G+ VH  I+K  + 
Sbjct: 279 NKLYGRAIGVFREVLSLG--PDQVSISSVLSA---CAGLVEL--DFGKQVHGSIVKRGLV 331

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG-FMSQGFVEDA---EEI 239
               +  +LVD Y K G    A  +F    +++V+    MI G F  + F +     + +
Sbjct: 332 GLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAM 391

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            R+ VE D   Y+++    S SI    +   +H  ++K    ++ ++ S+LV MY KCG 
Sbjct: 392 IREGVEPDEASYSSLFHA-SASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGS 450

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           + DA +VF   ++ NV  WT+MI  + ++G  N+A++LF  M    V P Y+TF+  LSA
Sbjct: 451 MLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSA 510

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H G +D G + F SM   +++KP +EHYACMVDLLGR G LE+A +F+  MP +P+S 
Sbjct: 511 CSHTGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSL 570

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW ALL +C  H +VEM    A  +FKL   D PG Y+ LSN     G  +   E+R  M
Sbjct: 571 VWGALLGACGKHANVEMGREVAERLFKLEP-DNPGNYMLLSNIYIRHGMLEEADEVRRLM 629

Query: 480 KLRGVLKDTGCSWV 493
            + GV K++GCSW+
Sbjct: 630 GINGVRKESGCSWI 643



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 102/432 (23%), Positives = 179/432 (41%), Gaps = 69/432 (15%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G ++H  I K G+     +   L+ ++ KCG  + A ++F     R +  +N MI G  
Sbjct: 317 FGKQVHGSIVKRGLVGLVYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCF 376

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +    E++ +  + ++  G  PD  ++S +  AS    S   L +  G M+H+ +LK   
Sbjct: 377 RCRNFEQACTYFQAMIREGVEPDEASYSSLFHASA---SIAALTQ--GTMIHSHVLKTGH 431

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             +  + ++LV  Y K G    A  VF    E NV+C T+MI+ F   G   +A ++F +
Sbjct: 432 VKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEE 491

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
            + + +V                                E +   S L    +  GKIDD
Sbjct: 492 MLNEGVVP-------------------------------EYITFVSVL-SACSHTGKIDD 519

Query: 303 ARRVFDHMQ-----QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
             + F+ M      +  +  +  M+D  G+ G   +A      M     +P+ + +   L
Sbjct: 520 GFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMP---FEPDSLVWGALL 576

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKME-HYACMVDLLGRAGSLEQALKFVLEMPEKP 416
            ACG    V+ GRE+    ER + ++P    +Y  + ++  R G LE+A +    M    
Sbjct: 577 GACGKHANVEMGREV---AERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMG--- 630

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
                   ++  R        ++  N  F  NANDR     + S T    G    + +L+
Sbjct: 631 --------INGVRKESGCSWIDV-KNRTFVFNANDR-----SHSRTQEIYGM---LQKLK 673

Query: 477 EKMKLRGVLKDT 488
           E +K RG + +T
Sbjct: 674 ELIKRRGYVAET 685



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/166 (27%), Positives = 83/166 (50%), Gaps = 4/166 (2%)

Query: 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--KNVFTWT 319
           +++ + A ++H QL+       +   + L+ +YAKCG I     +F+       NV TWT
Sbjct: 110 LKSLKHATQIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWT 169

Query: 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD 379
           ++I+   ++  P QAL  F  M+   + PN+ TF   L AC HA L+ +G++I   + + 
Sbjct: 170 TLINQLSRSNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHALIHKH 229

Query: 380 YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
             +       A ++D+  + GS+  A     EMP + N   W +++
Sbjct: 230 CFLNDPFVATA-LLDMYAKCGSMLLAENVFDEMPHR-NLVSWNSMI 273


>gi|226492710|ref|NP_001145953.1| uncharacterized protein LOC100279479 [Zea mays]
 gi|219885099|gb|ACL52924.1| unknown [Zea mays]
          Length = 530

 Score =  274 bits (700), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 144/415 (34%), Positives = 243/415 (58%), Gaps = 12/415 (2%)

Query: 89  LHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYT 148
           ++ KCGA+  A  +FD++P R + ++ Y+IAGY +N    E++ L+  ++ +  RP+G+T
Sbjct: 1   MYCKCGAVSDARHVFDKMPSRDVVSWTYLIAGYAQNYMPAEAIGLLPDMLRARFRPNGFT 60

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIV 208
           F+ +LKA+  C        ++G  +HA  +K +   D  + +AL+D Y +  +   A +V
Sbjct: 61  FTSLLKATGACGGC-----SIGEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMV 115

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSISIET 264
           FD ++ KN +   ++I+GF  +   E       E+ R         Y++M   ++  I  
Sbjct: 116 FDRLVSKNEVSWNALIAGFARKADGETTLMKFAEMQRNGFGATHFTYSSMFSAFA-RIGA 174

Query: 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
             +   VH  LIK+       +G+ ++ MYAK G + DAR+VFD M ++++ TW +M+  
Sbjct: 175 LEQGRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTA 234

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP 384
             + G   +A+  F  +++C +Q N +TFL  L+AC H GLV +G+  F+ M +DY+++P
Sbjct: 235 LAQYGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACSHGGLVKEGKHYFDMM-KDYNVQP 293

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
           +++HY   VDLLGRAG L++AL FV +MP +P + VW ALL +CR+H + +M   AA+ +
Sbjct: 294 EIDHYVSFVDLLGRAGLLKEALIFVFKMPMEPTAAVWGALLGACRMHKNAKMGQYAADHV 353

Query: 445 FKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           F+L+ +D  G  V L N  A+ GKW+    +R+ MK  GV K+  CSWV  E+ +
Sbjct: 354 FELDPDD-TGPPVLLYNIYASTGKWNDAARVRKMMKATGVKKEPACSWVQIENSV 407



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 87/192 (45%), Gaps = 9/192 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA   K     +  +   LL ++ +C  +  A  +FD L  +   ++N +IAG+ +
Sbjct: 77  GEQMHALAVKYNWDEDVYVGSALLDMYARCEQMDMAIMVFDRLVSKNEVSWNALIAGFAR 136

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
               E +L    ++  +G     +T+S +  A     +        GR VHA ++K   K
Sbjct: 137 KADGETTLMKFAEMQRNGFGATHFTYSSMFSAFARIGA-----LEQGRWVHAHLIKSGQK 191

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEI 239
               +   ++  Y K G    AR VFD M +++++   +M++     G  ++A    EEI
Sbjct: 192 LTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQYGLGKEAVAHFEEI 251

Query: 240 FRKTVEKDIVVY 251
            +  ++ + + +
Sbjct: 252 RKCGIQLNQITF 263



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 50/94 (53%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +HAH+ K+G K    +   +L ++ K G++  A ++FD + +R L  +N M+    +
Sbjct: 178 GRWVHAHLIKSGQKLTAFVGNTMLGMYAKSGSMVDARKVFDRMDKRDLVTWNTMLTALAQ 237

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
            G  +E+++   ++   G + +  TF  +L A +
Sbjct: 238 YGLGKEAVAHFEEIRKCGIQLNQITFLSVLTACS 271


>gi|15241448|ref|NP_199236.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170229|sp|Q9FFG8.1|PP417_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g44230
 gi|9759524|dbj|BAB10990.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|91806984|gb|ABE66219.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332007694|gb|AED95077.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  274 bits (700), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 174/505 (34%), Positives = 270/505 (53%), Gaps = 52/505 (10%)

Query: 36  YDSLSN--PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKC 93
           +  +SN   L  +SL S L   IN +      +IH H+ + G+  +  I  KL+    K 
Sbjct: 38  FSEISNQKELLVSSLISKLDDCINLNQI---KQIHGHVLRKGLDQSCYILTKLIRTLTKL 94

Query: 94  GAL--KYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           G     YA ++ + +  R    +  +I GY   G+ +E++++   +      P  +TFS 
Sbjct: 95  GVPMDPYARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSA 154

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           +LKA   C +   L  NLGR  HAQ  +        +   ++D YVK      AR VFD 
Sbjct: 155 LLKA---CGTMKDL--NLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDE 209

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV 271
           M E++VI  T +I+ +   G +E A E+F     KD+V + AM+ G++ + +  ++ALE 
Sbjct: 210 MPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAK-PQEALEY 268

Query: 272 HCQLIKNVFFED-------------------------------------VKLGSALVDMY 294
             ++ K+    D                                     V +GSAL+DMY
Sbjct: 269 FDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMY 328

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF-CMMQECCVQPNYVTF 353
           +KCG +++A  VF  M  KNVFT++SMI G   +G   +AL LF  M+ +  ++PN VTF
Sbjct: 329 SKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTF 388

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           +GAL AC H+GLVD+GR++F+SM + + ++P  +HY CMVDLLGR G L++AL+ +  M 
Sbjct: 389 VGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMS 448

Query: 414 EKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473
            +P+  VW ALL +CR+H++ E+A IAA  +F+L   D  G Y+ LSN  A+AG W  V 
Sbjct: 449 VEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEP-DIIGNYILLSNVYASAGDWGGVL 507

Query: 474 ELREKMKLRGVLKDTGCSWVGTESG 498
            +R+ +K +G+ K    SWV  ++G
Sbjct: 508 RVRKLIKEKGLKKTPAVSWVVDKNG 532


>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
          Length = 768

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 150/429 (34%), Positives = 245/429 (57%), Gaps = 11/429 (2%)

Query: 75  GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV 134
           G +P+    + +L+  +K G ++   QMFD +   +LS++N +++GY +N   +E++ L 
Sbjct: 319 GFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLF 378

Query: 135 RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVD 194
           R++      PD  T ++IL +     + + L    GR VHA   K   + D  L + L+ 
Sbjct: 379 REMQFRSVHPDRTTLAIILSS----LAGMMLLEG-GRQVHAVSQKAVFRTDIYLASGLIG 433

Query: 195 SYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN-- 252
            Y K GK   A+ +FD + E +++C  SM++G       ++A   F+K  EK +      
Sbjct: 434 MYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTFFKKMREKGMFPSQFS 493

Query: 253 -AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311
            A +      + +  +  +VH Q+ +  +  D  +GSAL+DMY+KCG +D AR VFD M 
Sbjct: 494 YATVLSCCAKLSSLSQGRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMML 553

Query: 312 QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371
            KN  TW  MI GY +NG  ++A+ L+  M     +P+ +TF+  L+AC H+GLVD G +
Sbjct: 554 GKNTVTWNEMIHGYAQNGCGDEAVLLYEDMIGSGEKPDGITFVAVLTACSHSGLVDTGIK 613

Query: 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           IF SM++++ ++P ++HY C++D LGRAG L +A   + +MP K +  +W  LLSSCR++
Sbjct: 614 IFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEAEVLIDKMPCKYDPIIWEVLLSSCRVY 673

Query: 432 DDVEMANIAANEIFKLN-ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGC 490
            DV +A  AA E+F L+  N  P  YV L+N  ++ G+WD    +RE M    V+KD G 
Sbjct: 674 ADVSLARRAAEELFHLDPQNSAP--YVLLANIYSSLGRWDDAKAVRELMSYNQVVKDPGY 731

Query: 491 SWVGTESGL 499
           SW+  ++G+
Sbjct: 732 SWIEHKNGM 740



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 185/402 (46%), Gaps = 28/402 (6%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
           T L S LQ  I+      G  IHAH+ ++ +  +T +S +L+  + KC A+  + ++FD+
Sbjct: 6   TYLASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRRLFDQ 65

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           +P+R +  +N ++  Y K  ++E++  L  ++            S + +   C      +
Sbjct: 66  MPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGAC---GALV 122

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
               GR  H   +K  +  +  +  AL+  Y K      A   F  + E N +  T+M+ 
Sbjct: 123 DVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMG 182

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY----------SISIETARKAL------ 269
           G      V +A  +FR  +   I V +  +                +  +   L      
Sbjct: 183 GLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHG 242

Query: 270 -EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
            +VHC  IK+ F  D+ L ++L+DMYAK G +D A  +F +M + +V +W  MI GYG+ 
Sbjct: 243 QQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQK 302

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
              ++A+E    MQ    +P+ +T++  L AC  +G ++ GR++F+ M       P +  
Sbjct: 303 SQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMS-----SPSLSS 357

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEK---PNSDVWAALLSS 427
           +  ++    +  + ++A+K   EM  +   P+    A +LSS
Sbjct: 358 WNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSS 399



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/276 (25%), Positives = 125/276 (45%), Gaps = 42/276 (15%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA   K   + +  ++  L+ ++ KCG ++ A ++FD + +  +  +N M+AG   
Sbjct: 409 GRQVHAVSQKAVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSL 468

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N   +E+ +  +K+   G  P  ++++ +L   +CC     L +  GR VH+QI +    
Sbjct: 469 NSLDKEAFTFFKKMREKGMFPSQFSYATVL---SCCAKLSSLSQ--GRQVHSQIAREGYM 523

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  + +AL+D Y K G    AR VFDMML KN +    MI G+   G  ++A       
Sbjct: 524 NDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEA------- 576

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
               +++Y  MI            A+   C                     +  G +D  
Sbjct: 577 ----VLLYEDMIGSGEKPDGITFVAVLTAC---------------------SHSGLVDTG 611

Query: 304 RRVFDHMQQKN-----VFTWTSMIDGYGKNGNPNQA 334
            ++F+ MQQ++     V  +T +ID  G+ G  ++A
Sbjct: 612 IKIFNSMQQEHGVEPLVDHYTCIIDSLGRAGRLHEA 647



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 76/149 (51%), Gaps = 4/149 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H+ I + G   +  +   L+ ++ KCG +  A  +FD +  +    +N MI GY +
Sbjct: 510 GRQVHSQIAREGYMNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQ 569

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  +E++ L   ++ SGE+PDG TF  +L A     S+  L     ++ ++   +  V+
Sbjct: 570 NGCGDEAVLLYEDMIGSGEKPDGITFVAVLTAC----SHSGLVDTGIKIFNSMQQEHGVE 625

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMM 212
                YT ++DS  + G+   A ++ D M
Sbjct: 626 PLVDHYTCIIDSLGRAGRLHEAEVLIDKM 654


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 172/488 (35%), Positives = 270/488 (55%), Gaps = 32/488 (6%)

Query: 10  SVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHA 69
           +++S+ H     L P N TFP  ++          + ++ SAL+          G ++H 
Sbjct: 114 ALYSNMHGA--GLFPDNYTFPFVVR----------SCAVLSALRE---------GKEVHC 152

Query: 70  HITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEE 129
           +I K G   +  +   L+ ++ + G       +F E+  R + ++  +IAGY++N   +E
Sbjct: 153 NIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKE 212

Query: 130 SLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLY 189
            L + R++V SG +P+  T   +L A   C     L  NLG+++H   +K  V  D  L 
Sbjct: 213 GLGVFREMVGSGTQPNAVTLVSVLPA---CAGLEFL--NLGKLIHGYGIKLGVDPDVSLT 267

Query: 190 TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK-TVEKDI 248
            AL+  Y K G    AR +FD M+ +N++   +MI+ +       +A ++FR+   EK  
Sbjct: 268 NALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVD 327

Query: 249 VVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFE-DVKLGSALVDMYAKCGKIDDARR 305
             Y  M+   S   S+        +H +L+K    E +V + +AL+DMYAKCG ID AR 
Sbjct: 328 FDYITMVSVISACASLGALNTGRWMH-ELVKRKGLEINVSITNALIDMYAKCGNIDLARE 386

Query: 306 VFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365
           VF+ +  ++V +WTSMI     +G+   AL+LF  M++  V+PN  TF    +AC H+GL
Sbjct: 387 VFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHSGL 446

Query: 366 VDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
           V++GR+ FESM RDYS+ P +EH ACMVDLLGRAGSL +A +F+ +MP +P+  VW ALL
Sbjct: 447 VEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWGALL 506

Query: 426 SSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485
            SCR+H ++E+A + A ++F L+       YV +SN  A AG+W+    LR+ M+ R + 
Sbjct: 507 GSCRIHSNLELAELVAEKLFLLDPQTVT-FYVLMSNIYAEAGRWEDAARLRKLMEERELK 565

Query: 486 KDTGCSWV 493
           K  G S V
Sbjct: 566 KIPGHSLV 573



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 105/378 (27%), Positives = 195/378 (51%), Gaps = 15/378 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGA--LKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           +IHA +   G   N  +S KL+I    C A  + YA +MFD++P+R +  +N +I GY  
Sbjct: 47  RIHALVVTNGCGQNLLLSTKLIITAC-CLAPTMDYARKMFDQMPKRDVFLWNTLIRGYAD 105

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G  EE+L+L   +  +G  PD YTF  ++++       V      G+ VH  I+K    
Sbjct: 106 AGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCA-----VLSALREGKEVHCNIVKHGFD 160

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +D  + ++LV  Y + G+T    +VF  M+ +N++  T++I+G++   + ++   +FR+ 
Sbjct: 161 SDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFKEGLGVFREM 220

Query: 244 V----EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           V    + + V   +++   +  +E       +H   IK     DV L +AL+ +Y KCG 
Sbjct: 221 VGSGTQPNAVTLVSVLPACA-GLEFLNLGKLIHGYGIKLGVDPDVSLTNALIALYGKCGN 279

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ++ AR +FD M  +N+ +W +MI  Y +N     A++LF  MQ   V  +Y+T +  +SA
Sbjct: 280 VETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEKVDFDYITMVSVISA 339

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C   G ++ GR + E ++R   ++  +     ++D+  + G+++ A +    +P +    
Sbjct: 340 CASLGALNTGRWMHELVKRK-GLEINVSITNALIDMYAKCGNIDLAREVFERLPCRSVVS 398

Query: 420 VWAALLSSCRLHDDVEMA 437
            W +++ +C  H   E A
Sbjct: 399 -WTSMIGACASHGHGEDA 415



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 156/342 (45%), Gaps = 33/342 (9%)

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKT-SYARIVFDMMLEKN 216
           CC S   L R     +HA ++      + +L T L+ +      T  YAR +FD M +++
Sbjct: 38  CCSSLPDLSR-----IHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQMPKRD 92

Query: 217 VICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVH 272
           V    ++I G+   G  E+A  ++       +  D   +  ++   ++ +   R+  EVH
Sbjct: 93  VFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAV-LSALREGKEVH 151

Query: 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPN 332
           C ++K+ F  DV + S+LV MY++ G+      VF  M  +N+ +WT++I GY +N    
Sbjct: 152 CNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQNRYFK 211

Query: 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK----PKMEH 388
           + L +F  M     QPN VT +  L AC     ++ G+ I       Y +K    P +  
Sbjct: 212 EGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLI-----HGYGIKLGVDPDVSL 266

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI---F 445
              ++ L G+ G++E A      M  + N   W A++++       E  N  AN +    
Sbjct: 267 TNALIALYGKCGNVETARSLFDGMVVQ-NLVSWNAMIAA------YEQNNAGANAVKLFR 319

Query: 446 KLNANDRPGAYVALSNTLAAA---GKWDSVTELREKMKLRGV 484
           ++ A      Y+ + + ++A    G  ++   + E +K +G+
Sbjct: 320 RMQAEKVDFDYITMVSVISACASLGALNTGRWMHELVKRKGL 361


>gi|345505230|gb|AEN99839.1| chlororespiratory reduction 4 [Nasturtium officinale]
          Length = 614

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 156/473 (32%), Positives = 249/473 (52%), Gaps = 62/473 (13%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH  + KTG+  +  +   L+ L+LKCG L +A Q+FD +PQR   +YN MI GY+K
Sbjct: 141 GMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYIK 200

Query: 124 NGQVEESLSL-------VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
            G +E +  L       ++ L+S      GY       A T    N+           A 
Sbjct: 201 CGLIESARELFDLMPREMKNLISWNSMISGY-------AQTSDGVNI-----------AS 242

Query: 177 ILKCDVKADDVL-YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
            L  ++   D++ + +L+  YVK G+   A+ +F +M  ++V+   +MI G+   GFV  
Sbjct: 243 KLFAEMPEKDLISWNSLIYGYVKHGRMEDAKDLFHVMPRRDVVTWATMIDGYAKLGFVHK 302

Query: 236 AEEIFRKTVEKDIVVYNAMIEGY--------SISI-------------ETA--------- 265
           A+ +F +   +D+V YN+M+ GY        ++ I             ET          
Sbjct: 303 AKTLFDQMPHRDVVAYNSMMAGYVQNRHHMEALEIFSDMEKESHLTPDETTLVIVLSAIA 362

Query: 266 -----RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
                 KA+++H  +++  F+   KLG AL+DMY+KCG I  A  VF+ ++ K++  W +
Sbjct: 363 QLGQLSKAMDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQQAMCVFEGIENKSIDHWNA 422

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
           MI G   +G    A  +   ++   ++P+Y+TF+G L+AC H+GLV +G   FE M R +
Sbjct: 423 MIGGLAIHGLGESAFNILLEIERRSIEPDYITFVGVLNACSHSGLVKEGLLCFELMRRKH 482

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIA 440
            ++P+++HY CMVDLL R GS+E A   + EMP +PN  +W   L++C  H + E+  + 
Sbjct: 483 KIEPRLQHYGCMVDLLSRCGSIELAKNLIEEMPIEPNDVIWRTFLTACNHHKEFEIGELV 542

Query: 441 ANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           A  +  L A   P +YV LSN  A+ G+W  V  +R  MK R + K  GCSW+
Sbjct: 543 AKHLI-LQAGYNPSSYVLLSNMYASFGRWKDVRNVRTMMKERKLQKVPGCSWI 594



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 113/474 (23%), Positives = 212/474 (44%), Gaps = 60/474 (12%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHL---KCGALKYAGQMFDELPQRTLSA--------Y 114
           KIHA +  TG   N+N++ K+++      +    ++A  +F E    + +         +
Sbjct: 31  KIHARLITTGFIKNSNLTTKIVVAFADSRRPYLAEFARYVFREYHVCSFAPGDVKDPFLW 90

Query: 115 NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH 174
           N +I  +        +L     ++ +G   D ++FS++LKA  C R         G  +H
Sbjct: 91  NLVIKSHSHGVDPRRALLWFCLMLENGISVDKFSFSLVLKA--CSRLGF---LKGGMQIH 145

Query: 175 AQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVE 234
             + K  + +D  L   L+  Y+K G   +AR +FD M +++ +   SMI G++  G +E
Sbjct: 146 GFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYIKCGLIE 205

Query: 235 DAEEIFRKTVE--KDIVVYNAMIEGYSISIETARKALEVHCQL----------------- 275
            A E+F       K+++ +N+MI GY+ + +    A ++  ++                 
Sbjct: 206 SARELFDLMPREMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIYGYVK 265

Query: 276 ------IKNVFF----EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
                  K++F      DV   + ++D YAK G +  A+ +FD M  ++V  + SM+ GY
Sbjct: 266 HGRMEDAKDLFHVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGY 325

Query: 326 GKNGNPNQALELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREI-FESMERDYSMK 383
            +N +  +ALE+F  M +E  + P+  T +  LSA    G + K  ++    +E+ + + 
Sbjct: 326 VQNRHHMEALEIFSDMEKESHLTPDETTLVIVLSAIAQLGQLSKAMDMHLYIVEKQFYLG 385

Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANE 443
            K+     ++D+  + GS++QA+  V E  E  + D W A++    +H    +   A N 
Sbjct: 386 GKLG--VALIDMYSKCGSIQQAM-CVFEGIENKSIDHWNAMIGGLAIHG---LGESAFNI 439

Query: 444 IFKLNANDRPGAYVALSNTLAAAGKWDSVTE-------LREKMKLRGVLKDTGC 490
           + ++        Y+     L A      V E       +R K K+   L+  GC
Sbjct: 440 LLEIERRSIEPDYITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGC 493


>gi|356519383|ref|XP_003528352.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 614

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 156/466 (33%), Positives = 265/466 (56%), Gaps = 45/466 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G K+HA + KTG++ +  +    + ++ + G ++   Q+F+E+P R   ++N MI+GY++
Sbjct: 127 GEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVR 186

Query: 124 NGQVEESLSLVRKL-VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
             + EE++ + R++   S E+P+  T    L A    R+       LG+ +H  I   ++
Sbjct: 187 CKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRN-----LELGKEIHDYIAS-EL 240

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
               ++  AL+D Y K G  S AR +FD M  KNV C TSM++G++  G ++ A  +F +
Sbjct: 241 DLTTIMGNALLDMYCKCGHVSVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFER 300

Query: 243 TVEKDIVVYNAMIEGY--------------SISIETARK----------------ALE-- 270
           +  +DIV++ AMI GY               + I   +                 ALE  
Sbjct: 301 SPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQG 360

Query: 271 --VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
             +H  + +N    D  +G+AL++MYAKCG I+ +  +F+ +++K+  +WTS+I G   N
Sbjct: 361 KWIHNYIDENRIKVDAVVGTALIEMYAKCGCIEKSFEIFNGLKEKDTTSWTSIICGLAMN 420

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G P++ALELF  MQ C ++P+ +TF+  LSAC HAGLV++GR++F SM   Y ++P +EH
Sbjct: 421 GKPSEALELFKAMQTCGLKPDDITFVAVLSACSHAGLVEEGRKLFHSMSSMYHIEPNLEH 480

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDV---WAALLSSCRLHDDVEMANIAANEIF 445
           Y C +DLLGRAG L++A + V ++P + N  +   + ALLS+CR + +++M    A  + 
Sbjct: 481 YGCFIDLLGRAGLLQEAEELVKKLPAQNNEIIVPLYGALLSACRTYGNIDMGERLATALA 540

Query: 446 KLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
           K+ ++D    +  L++  A+A +W+ V ++R KMK  G+ K  G S
Sbjct: 541 KVKSSD-SSLHTLLASIYASADRWEDVRKVRNKMKDLGIKKVPGYS 585



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 182/396 (45%), Gaps = 43/396 (10%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHL--KCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           +I AHI   G++ + +   KL+   +    G   YA ++F+ +   +L  YN MI  ++K
Sbjct: 26  QIQAHIFCVGLQQDRDTLNKLMAFSMDSSLGDFNYANRIFNYIHDPSLFIYNLMIKAFVK 85

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G    ++SL ++L   G  PD YT+  +LK   C    +   R  G  VHA ++K  ++
Sbjct: 86  SGSFRSAISLFQQLREHGVWPDNYTYPYVLKGIGC----IGEVRE-GEKVHAFVVKTGLE 140

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +  + +D Y + G       VF+ M +++ +    MISG++     E+A +++R+ 
Sbjct: 141 FDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDAVSWNIMISGYVRCKRFEEAVDVYRRM 200

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE---DVKLGSALVDMYAKCGKI 300
             +     N      ++S     + LE+  ++   +  E      +G+AL+DMY KCG +
Sbjct: 201 WTESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIASELDLTTIMGNALLDMYCKCGHV 260

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQA-------------------------- 334
             AR +FD M  KNV  WTSM+ GY   G  +QA                          
Sbjct: 261 SVAREIFDAMTVKNVNCWTSMVTGYVICGQLDQARNLFERSPSRDIVLWTAMINGYVQFN 320

Query: 335 -----LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
                + LF  MQ   V+P+    +  L+ C  +G +++G+ I   ++ +  +K      
Sbjct: 321 RFEETIALFGEMQIRGVKPDKFIVVTLLTGCAQSGALEQGKWIHNYIDEN-RIKVDAVVG 379

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
             ++++  + G +E++ +    + EK  +  W +++
Sbjct: 380 TALIEMYAKCGCIEKSFEIFNGLKEKDTTS-WTSII 414



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/308 (22%), Positives = 141/308 (45%), Gaps = 21/308 (6%)

Query: 200 GKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK----DIVVYNAMI 255
           G  +YA  +F+ + + ++     MI  F+  G    A  +F++  E     D   Y  ++
Sbjct: 56  GDFNYANRIFNYIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYTYPYVL 115

Query: 256 EGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
           +G    I   R+  +VH  ++K     D  + ++ +DMYA+ G ++   +VF+ M  ++ 
Sbjct: 116 KGIG-CIGEVREGEKVHAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQVFEEMPDRDA 174

Query: 316 FTWTSMIDGYGKNGNPNQALELF-CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374
            +W  MI GY +     +A++++  M  E   +PN  T +  LSAC     ++ G+EI +
Sbjct: 175 VSWNIMISGYVRCKRFEEAVDVYRRMWTESNEKPNEATVVSTLSACAVLRNLELGKEIHD 234

Query: 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDV 434
            +  +  +   M +   ++D+  + G +  A +    M  K N + W ++++   +   +
Sbjct: 235 YIASELDLTTIMGN--ALLDMYCKCGHVSVAREIFDAMTVK-NVNCWTSMVTGYVICGQL 291

Query: 435 EMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD------- 487
           +     A  +F+ + +     + A+ N      +++    L  +M++RGV  D       
Sbjct: 292 DQ----ARNLFERSPSRDIVLWTAMINGYVQFNRFEETIALFGEMQIRGVKPDKFIVVTL 347

Query: 488 -TGCSWVG 494
            TGC+  G
Sbjct: 348 LTGCAQSG 355



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 43/182 (23%), Positives = 83/182 (45%), Gaps = 19/182 (10%)

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           M +  G  + A R+F+++   ++F +  MI  + K+G+   A+ LF  ++E  V P+  T
Sbjct: 51  MDSSLGDFNYANRIFNYIHDPSLFIYNLMIKAFVKSGSFRSAISLFQQLREHGVWPDNYT 110

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH--YAC--MVDLLGRAGSLEQALKF 408
           +   L   G  G V +G ++       + +K  +E   Y C   +D+    G +E   + 
Sbjct: 111 YPYVLKGIGCIGEVREGEKV-----HAFVVKTGLEFDPYVCNSFMDMYAELGLVEGFTQV 165

Query: 409 VLEMPEKPNSDVWAALLSS---C-RLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464
             EMP++ ++  W  ++S    C R  + V++      E     +N++P     +S   A
Sbjct: 166 FEEMPDR-DAVSWNIMISGYVRCKRFEEAVDVYRRMWTE-----SNEKPNEATVVSTLSA 219

Query: 465 AA 466
            A
Sbjct: 220 CA 221


>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Brachypodium distachyon]
          Length = 805

 Score =  273 bits (699), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 153/468 (32%), Positives = 260/468 (55%), Gaps = 12/468 (2%)

Query: 36  YDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGA 95
           +DSL N ++  S    +  +  + +    L++   + ++G +PN      +L   +K   
Sbjct: 307 FDSLPN-ISTVSWNILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASCIKARD 365

Query: 96  LKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           +  A  MFD++ + +++ +N +++GY +    ++++ L R++     +PD  T ++IL  
Sbjct: 366 VLSARAMFDKISRPSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLAVIL-- 423

Query: 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
           S+C R  +    +LG  VH+  ++  +  D  + + LVD Y K G+   ARI+F+ M E+
Sbjct: 424 SSCSRLGI---LDLGTQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARIIFNRMTER 480

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIV----VYNAMIEGYSISIETARKALEV 271
           +V+C  SMISG       E+A + F++     ++     Y +MI   +  + +  +  ++
Sbjct: 481 DVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPTESSYASMINSCA-RLSSVPQGRQI 539

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
           H Q++K+ + ++V +GSAL+DMYAKCG +DDAR  FD M  KN+  W  MI GY +NG  
Sbjct: 540 HAQIVKDGYDQNVYVGSALIDMYAKCGNMDDARVFFDCMVTKNIVAWNEMIHGYAQNGFG 599

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC 391
            +A++LF  M     +P+ VTF+  L+ C H+GLVD+    F SME  Y + P  EHY C
Sbjct: 600 EKAVDLFEYMLTTEQRPDGVTFIAVLTGCSHSGLVDEAIAFFNSMESTYGITPLAEHYTC 659

Query: 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451
           ++D LGRAG L +    +  MP K +  VW  LL++C +H + E+   AA  +F+L+  +
Sbjct: 660 LIDGLGRAGRLVEVEALIDNMPCKDDPIVWEVLLAACAVHHNAELGECAAKHLFRLDPKN 719

Query: 452 RPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
            P  YV LSN  A+ G+    + +R  M  RGV+K  G SW+  + G+
Sbjct: 720 -PSPYVLLSNIYASLGRHGDASGVRALMSSRGVVKGRGYSWIDHKDGV 766



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/366 (25%), Positives = 173/366 (47%), Gaps = 24/366 (6%)

Query: 77  KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRK 136
           +PN       L    + G L  A  + DE+P R + ++N +IA   ++ +  E+L L   
Sbjct: 71  RPNAYSYNAALSAARRAGDLDAARALLDEMPDRNVVSWNTVIAALARSERAGEALELYEG 130

Query: 137 LVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196
           ++  G  P  +T + +L A   C +   L  + GR  H   +K  +  +  +  AL+  Y
Sbjct: 131 MLREGLVPTHFTLASVLSA---CGAVAAL--DDGRRCHGLAVKVGLDENLFVENALLGMY 185

Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYN 252
            K G    A  +FD M   N +  T+M+ G +  G V+DA  +F    R  V  D V  +
Sbjct: 186 TKCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVS 245

Query: 253 AMIEGYSIS-------IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARR 305
           +++   + +       +   R    +H  +++  F  D  +G++L+DMY KC ++D+A +
Sbjct: 246 SVLGSCAQACASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVK 305

Query: 306 VFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365
           VFD +   +  +W  +I G+G+ G+  +ALE+  +M+E   +PN VT+   L++C  A  
Sbjct: 306 VFDSLPNISTVSWNILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASCIKARD 365

Query: 366 VDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVWA 422
           V   R +F+ + R     P +  +  ++    +    +  ++    M     +P+    A
Sbjct: 366 VLSARAMFDKISR-----PSVTTWNTLLSGYCQEELHQDTVELFRRMQHQNVQPDRTTLA 420

Query: 423 ALLSSC 428
            +LSSC
Sbjct: 421 VILSSC 426



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 92/417 (22%), Positives = 174/417 (41%), Gaps = 73/417 (17%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G + H    K G+  N  +   LL ++ KCG ++ A ++FD +      ++  M+ G ++
Sbjct: 159 GRRCHGLAVKVGLDENLFVENALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQ 218

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKA-STCCRSNVPLPR--NLGRMVHAQILKC 180
            G V+++L L  ++  SG R D    S +L + +  C S   + R   LG+ +HA I++ 
Sbjct: 219 AGSVDDALRLFARMCRSGVRVDPVAVSSVLGSCAQACASEFDVVRAFRLGQCIHALIVRK 278

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI- 239
              +D  +  +L+D Y K  +   A  VFD +   + +    +I+GF   G    A E+ 
Sbjct: 279 GFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSLPNISTVSWNILITGFGQAGSYAKALEVL 338

Query: 240 ----------------------------------FRKTVEKDIVVYNAMIEGY------S 259
                                             F K     +  +N ++ GY       
Sbjct: 339 NLMEESGSEPNEVTYSNMLASCIKARDVLSARAMFDKISRPSVTTWNTLLSGYCQEELHQ 398

Query: 260 ISIETARK----------------------------ALEVHCQLIKNVFFEDVKLGSALV 291
            ++E  R+                              +VH   ++ +   D+ + S LV
Sbjct: 399 DTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHSASVRFLLHNDMFVASGLV 458

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
           DMY+KCG+I  AR +F+ M +++V  W SMI G   +    +A + F  M+   + P   
Sbjct: 459 DMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRGNGMMPTES 518

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKF 408
           ++   +++C     V +GR+I   + +D      +   + ++D+  + G+++ A  F
Sbjct: 519 SYASMINSCARLSSVPQGRQIHAQIVKD-GYDQNVYVGSALIDMYAKCGNMDDARVF 574


>gi|357117655|ref|XP_003560579.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Brachypodium distachyon]
          Length = 614

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 141/436 (32%), Positives = 262/436 (60%), Gaps = 16/436 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HAH+ K   +P   ++ +L+IL+++CGAL  A  + D +P+R + ++  MI+GY +
Sbjct: 60  GRQVHAHMVKARYRPPVYLATRLIILYVRCGALDDARNVLDGMPERNVVSWTAMISGYSQ 119

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRM--VHAQILKCD 181
           +G+  E+L L  +++ +G + + +T + +L   T C    P+ +++ ++  VH+ ++K +
Sbjct: 120 SGRHAEALELFIRMLRAGCKANEFTLATVL---TSC----PVHQSIQQVEQVHSLVVKTN 172

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
            ++   + ++L+D Y K G    AR VFDM+ E++ +  T++ISG+   G  ++A ++FR
Sbjct: 173 FESHMFVGSSLLDMYGKSGNIQEARKVFDMLPERDTVSCTAIISGYAQLGLDDEALDLFR 232

Query: 242 KT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           +     ++ + V +  ++   S  + +     +VH  +++      + L ++L+DMY+KC
Sbjct: 233 QLYSSGMQCNYVTFTTLLTSLS-GLASLNYGKQVHGLILRKELPFFIVLQNSLIDMYSKC 291

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           GK+  +RRVFD+M Q++  +W +M+ GYG++G   + ++LF  M E  V+P+ VT L  L
Sbjct: 292 GKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEE-VKPDSVTLLAVL 350

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           S C H GLVD+G +IF+ + ++ +    + HY C++DLLGR+G L++AL  +  MP +P 
Sbjct: 351 SGCSHGGLVDEGLDIFDLIVKEQNAVIHIGHYGCVIDLLGRSGQLQKALDLIEHMPFEPT 410

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
             +W +LL +CR+H +V +  + A ++  +   +  G YV LSN  AAAG W  V  +R+
Sbjct: 411 PAIWGSLLGACRVHINVSVGEVVAQKLLDMEPGN-AGNYVILSNIYAAAGMWKDVFRVRK 469

Query: 478 KMKLRGVLKDTGCSWV 493
            M    V K+   SW+
Sbjct: 470 LMLENTVTKEPAKSWI 485



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 11/132 (8%)

Query: 27  QTFPPKLQ-NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIK 85
           Q +   +Q NY + +  LT+ S  ++L          YG ++H  I +  +     +   
Sbjct: 233 QLYSSGMQCNYVTFTTLLTSLSGLASLN---------YGKQVHGLILRKELPFFIVLQNS 283

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           L+ ++ KCG L Y+ ++FD +PQR+  ++N M+ GY ++G  +E + L R +     +PD
Sbjct: 284 LIDMYSKCGKLLYSRRVFDNMPQRSAISWNAMLMGYGRHGIGQEVVQLFRTMTEE-VKPD 342

Query: 146 GYTFSMILKAST 157
             T   +L   +
Sbjct: 343 SVTLLAVLSGCS 354


>gi|356542389|ref|XP_003539649.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Glycine max]
          Length = 676

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 167/492 (33%), Positives = 258/492 (52%), Gaps = 39/492 (7%)

Query: 10  SVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHA 69
           SV++S   R +   P N TFP  L+           T LP    HY +      GL +H+
Sbjct: 87  SVYASM--RQHGFAPDNFTFPFVLK---------ACTRLP----HYFH-----VGLSLHS 126

Query: 70  HITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEE 129
            + KTG   +  +   L+ L+ K G L  A ++FDE+P++ + ++  +I GY+++G   E
Sbjct: 127 LVIKTGFDWDVFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGE 186

Query: 130 SLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLY 189
           +L L R L+  G RPD +T   IL A  C R         GR +   + +     +  + 
Sbjct: 187 ALGLFRGLLEMGLRPDSFTLVRILYA--CSRVG---DLASGRWIDGYMRESGSVGNVFVA 241

Query: 190 TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVE 245
           T+LVD Y K G    AR VFD M+EK+V+C +++I G+ S G  ++A ++F    R+ V 
Sbjct: 242 TSLVDMYAKCGSMEEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVR 301

Query: 246 KD----IVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
            D    + V++A     ++ +    + L     +  + F  +  LG+AL+D YAKCG + 
Sbjct: 302 PDCYAMVGVFSACSRLGALELGNWARGL-----MDGDEFLSNPVLGTALIDFYAKCGSVA 356

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            A+ VF  M++K+   + ++I G    G+   A  +F  M +  +QP+  TF+G L  C 
Sbjct: 357 QAKEVFKGMRRKDCVVFNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCT 416

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
           HAGLVD G   F  M   +S+ P +EHY CMVDL  RAG L +A   +  MP + NS VW
Sbjct: 417 HAGLVDDGHRYFSGMSSVFSVTPTIEHYGCMVDLQARAGLLVEAQDLIRSMPMEANSIVW 476

Query: 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
            ALL  CRLH D ++A     ++ +L   +  G YV LSN  +A+ +WD   ++R  +  
Sbjct: 477 GALLGGCRLHKDTQLAEHVLKQLIELEPWN-SGHYVLLSNIYSASHRWDEAEKIRSSLNQ 535

Query: 482 RGVLKDTGCSWV 493
           +G+ K  GCSWV
Sbjct: 536 KGMQKLPGCSWV 547



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/410 (28%), Positives = 198/410 (48%), Gaps = 13/410 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           + H  + + G+  +T +   LL   L   A +YA  +F + P   +  YN +I G + N 
Sbjct: 21  QCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVSND 80

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              +++S+   +   G  PD +TF  +LKA T     +P   ++G  +H+ ++K     D
Sbjct: 81  AFRDAVSVYASMRQHGFAPDNFTFPFVLKACT----RLPHYFHVGLSLHSLVIKTGFDWD 136

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             + T LV  Y K G  + AR VFD + EKNV+  T++I G++  G   +A  +FR  +E
Sbjct: 137 VFVKTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLE 196

Query: 246 KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE-----DVKLGSALVDMYAKCGKI 300
             +   +  +    I    +R       + I     E     +V + ++LVDMYAKCG +
Sbjct: 197 MGLRPDSFTL--VRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATSLVDMYAKCGSM 254

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           ++ARRVFD M +K+V  W+++I GY  NG P +AL++F  MQ   V+P+    +G  SAC
Sbjct: 255 EEARRVFDGMVEKDVVCWSALIQGYASNGMPKEALDVFFEMQRENVRPDCYAMVGVFSAC 314

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
              G ++ G      M+ D  +   +   A ++D   + GS+ QA K V +   + +  V
Sbjct: 315 SRLGALELGNWARGLMDGDEFLSNPVLGTA-LIDFYAKCGSVAQA-KEVFKGMRRKDCVV 372

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
           + A++S   +   V  A     ++ K+        +V L      AG  D
Sbjct: 373 FNAVISGLAMCGHVGAAFGVFGQMVKVGMQPDGNTFVGLLCGCTHAGLVD 422



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 136/291 (46%), Gaps = 10/291 (3%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           +  H  +L+  +  D  L   L+ S +    T YA +VF      N+    ++I G +S 
Sbjct: 20  KQCHCLLLRLGLHQDTYLINLLLRSSLHFAATQYATVVFAQTPHPNIFLYNTLIRGMVSN 79

Query: 231 GFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
               DA  ++    +     D   +  +++  +         L +H  +IK  F  DV +
Sbjct: 80  DAFRDAVSVYASMRQHGFAPDNFTFPFVLKACTRLPHYFHVGLSLHSLVIKTGFDWDVFV 139

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
            + LV +Y+K G + DAR+VFD + +KNV +WT++I GY ++G   +AL LF  + E  +
Sbjct: 140 KTGLVCLYSKNGFLTDARKVFDEIPEKNVVSWTAIICGYIESGCFGEALGLFRGLLEMGL 199

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
           +P+  T +  L AC   G +  GR I   M    S+       + +VD+  + GS+E+A 
Sbjct: 200 RPDSFTLVRILYACSRVGDLASGRWIDGYMRESGSVGNVFVATS-LVDMYAKCGSMEEAR 258

Query: 407 KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN-ANDRPGAY 456
           +    M EK +   W+AL+     +    M   A +  F++   N RP  Y
Sbjct: 259 RVFDGMVEK-DVVCWSALIQG---YASNGMPKEALDVFFEMQRENVRPDCY 305


>gi|357454909|ref|XP_003597735.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240430|gb|ABD32288.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355486783|gb|AES67986.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 620

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 156/483 (32%), Positives = 267/483 (55%), Gaps = 16/483 (3%)

Query: 20  YTLVPPNQTFPPKLQNYDSLS------NPLTATSLPSALQHYINSDTPFYGLKIHAHITK 73
           + L P +Q+F   L  + + S       P T     S LQ  I+S     G ++HA    
Sbjct: 16  FNLFPFSQSFYHSLATHQTASVDSFPPQPTTHYGYTSLLQSCIDSKALNPGKQLHAQFYH 75

Query: 74  TGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL 133
            G+  N +++ KL+ L+    +L  A  +FD++P++ L  +N +I GY  NG  + ++ L
Sbjct: 76  LGIAYNQDLATKLVHLYAVSNSLLNARNLFDKIPKQNLFLWNVLIRGYAWNGPHDNAIIL 135

Query: 134 VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALV 193
             K++  G RPD +T   +LKA   C +   +    GR +H  ++K   + D  +  AL+
Sbjct: 136 YHKMLDYGLRPDNFTLPFVLKA---CSALSAIGE--GRSIHEYVIKSGWERDLFVGAALI 190

Query: 194 DSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNA 253
           D Y K G    A  VFD ++ ++ +   SM++ +   G  +++  + R+     +    A
Sbjct: 191 DMYAKCGCVMDAGRVFDKIVVRDAVLWNSMLAAYAQNGHPDESISLCREMAANGVRPTEA 250

Query: 254 -MIEGYSISIETA--RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM 310
            ++   S S + A      E+H    ++ F  + K+ +AL+DMYAKCG +  A  +F+ +
Sbjct: 251 TLVTVISSSADVACLPYGREIHGFGWRHGFQSNDKVKTALIDMYAKCGSVKVALALFERL 310

Query: 311 QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR 370
           ++K V +W ++I GY  +G    AL+LF  M++   +P+++TF+G L+AC    L+D+GR
Sbjct: 311 REKRVVSWNAIITGYAMHGLAVGALDLFDKMRKE-DRPDHITFVGVLAACSRGRLLDEGR 369

Query: 371 EIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRL 430
            ++  M RDY + P ++HY CM+DLLG  G L++A   +  M  KP+S VW ALL+SC++
Sbjct: 370 ALYNLMVRDYGITPTVQHYTCMIDLLGHCGQLDEAYDLIRNMSVKPDSGVWGALLNSCKI 429

Query: 431 HDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGC 490
           H +VE+A +A  ++ +L  +D  G YV L+N  A +GKW+ V +LR+ M  + + K+  C
Sbjct: 430 HGNVELAELALEKLIELEPDD-SGNYVILANMYAQSGKWEGVEKLRQVMIDKRIKKNIAC 488

Query: 491 SWV 493
           SW+
Sbjct: 489 SWI 491


>gi|296082436|emb|CBI21441.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 152/426 (35%), Positives = 234/426 (54%), Gaps = 40/426 (9%)

Query: 99  AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
           A  +FD+L Q  + A+  ++  Y +NG  +E +    ++   G  PD Y F  + +A   
Sbjct: 416 AQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFRA--- 472

Query: 159 CRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI 218
           C   + L   +G  VH  ++ C  + D  +  +L+D Y K G     R VFD M+E++V+
Sbjct: 473 CGQLLWL--EVGIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVL 530

Query: 219 CSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE-------- 270
              SMISG+  +  ++DA  +F      D+V +NAMI G+ + +E    ALE        
Sbjct: 531 SWNSMISGYCKR--IQDALNVFELMDRFDVVTWNAMILGF-VDLEMGHLALECFSKMQRS 587

Query: 271 -----------------------VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVF 307
                                  VH  + KN F   + + +AL+ MY+KCG I  A  +F
Sbjct: 588 GIMNNQITISTVLPACDLKSGKQVHAYITKNSFSSVIPVWNALIHMYSKCGCIGTAYSIF 647

Query: 308 DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367
            +M  +++ +W +MI G+G +G    AL+L   M    V PN VTF  ALSAC H+GLVD
Sbjct: 648 SNMISRDLVSWNTMIGGFGMHGLGQFALQLLRDMSHSDVCPNSVTFTSALSACSHSGLVD 707

Query: 368 KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
           +G E+F +M RD+   P MEH++C+VDLL RA  LE A+ F+ +MP KP+  +W+ALL++
Sbjct: 708 EGMELFHTMTRDFGFTPGMEHFSCVVDLLARADRLEDAVGFIEKMPLKPSKHIWSALLAA 767

Query: 428 CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487
           CR   +V +A +AA ++F+L   +  G YV LSN  A AG+WD    +R+ M+ RG++K 
Sbjct: 768 CRAQQNVSVAKLAAEQLFQLEP-EHAGNYVTLSNIYARAGRWDDAVAVRKLMEDRGLVKP 826

Query: 488 TGCSWV 493
           +G SW+
Sbjct: 827 SGYSWI 832



 Score = 62.0 bits (149), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 77/357 (21%), Positives = 157/357 (43%), Gaps = 48/357 (13%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+++H  +   G + +  +   L+ ++ K G +    ++FDE+ +R + ++N MI+GY K
Sbjct: 482 GIQVHKDVVICGCEFDLQVCNSLIDMYSKSGDVGSGRRVFDEMVERDVLSWNSMISGYCK 541

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTF-SMIL------------------KASTCCRSNVP 164
             +++++L++   +    +R D  T+ +MIL                  + S    + + 
Sbjct: 542 --RIQDALNVFELM----DRFDVVTWNAMILGFVDLEMGHLALECFSKMQRSGIMNNQIT 595

Query: 165 LPRNL-------GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
           +   L       G+ VHA I K    +   ++ AL+  Y K G    A  +F  M+ +++
Sbjct: 596 ISTVLPACDLKSGKQVHAYITKNSFSSVIPVWNALIHMYSKCGCIGTAYSIFSNMISRDL 655

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHC 273
           +   +MI GF   G  + A ++ R     D+    V + + +   S S     + +E+  
Sbjct: 656 VSWNTMIGGFGMHGLGQFALQLLRDMSHSDVCPNSVTFTSALSACSHS-GLVDEGMELFH 714

Query: 274 QLIKNV-FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNGNP 331
            + ++  F   ++  S +VD+ A+  +++DA    + M  K +   W++++       N 
Sbjct: 715 TMTRDFGFTPGMEHFSCVVDLLARADRLEDAVGFIEKMPLKPSKHIWSALLAACRAQQNV 774

Query: 332 N----QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP 384
           +     A +LF +  E     NYVT     +    AG  D    + + ME    +KP
Sbjct: 775 SVAKLAAEQLFQLEPEHA--GNYVTLSNIYA---RAGRWDDAVAVRKLMEDRGLVKP 826



 Score = 46.2 bits (108), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 32/135 (23%), Positives = 64/135 (47%), Gaps = 16/135 (11%)

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           K   A+ +FD + Q NVF WT+++  Y +NG  ++ +  +  M+   V P+   F     
Sbjct: 412 KNSSAQALFDKLSQPNVFAWTAILGFYSRNGLSDECVRTYSEMKLKGVLPDKYVFPKVFR 471

Query: 359 ACGHAGLVDKGREIFESM-----ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           ACG    ++ G ++ + +     E D      ++    ++D+  ++G +    +   EM 
Sbjct: 472 ACGQLLWLEVGIQVHKDVVICGCEFD------LQVCNSLIDMYSKSGDVGSGRRVFDEMV 525

Query: 414 EKPNSDV--WAALLS 426
           E+   DV  W +++S
Sbjct: 526 ER---DVLSWNSMIS 537


>gi|225447376|ref|XP_002274886.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 736

 Score =  273 bits (698), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 168/567 (29%), Positives = 275/567 (48%), Gaps = 117/567 (20%)

Query: 33  LQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAH-ITKTGVKPNTNISIKLLILHL 91
           LQ Y     PLT+    + LQ + N+ +   G ++HAH I+ + ++ NT ++ KL   + 
Sbjct: 52  LQQY-----PLTSLQCGALLQSFTNTKSFKQGQQLHAHMISFSILENNTYLNTKLAAFYA 106

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
            CG +  A  +FD +  +    +N+MI GY  NG   +SL L R+++  G+R D +T+  
Sbjct: 107 GCGLMSQAEVIFDGIVLKNSFLWNFMIRGYASNGLPMKSLVLYREMLCFGQRADNFTYPF 166

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA--------------------------- 184
           +LKA         L   +GR VH++++ C +++                           
Sbjct: 167 VLKAC-----GDLLLVEIGRRVHSEVVVCGLESDIYVGNSLLAMYAKFGDMGTARMVFDR 221

Query: 185 ----DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG-------------- 226
               D   +  ++  Y K   +  A +VFD+M +  +    + + G              
Sbjct: 222 MAERDLTSWNTMISGYAKNADSGTAFLVFDLMGKAGLFADCTTLLGLLSACADLKAVKEG 281

Query: 227 -----------------FMSQGFVE---------DAEEIFRKTVEKDIVVYNAMIEGYSI 260
                            F +   +E         DA  +F +   KD V +N+MI GY+ 
Sbjct: 282 KVIHGYAVRNSIGNYNKFFTNSLIEMYCNCNCMVDARRLFERVRWKDTVSWNSMILGYAR 341

Query: 261 S----------------------------------IETARKALEVHCQLIKNVFFEDVKL 286
           +                                  I   R  + +H  L+K  F  +  +
Sbjct: 342 NGDAFESLRLFRRMALDGSGPDQVTFIAVLGACDQIAALRYGMSIHSYLVKKGFDANTIV 401

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
           G+ALVDMY+KCG +  +RRVFD M  K++ +W++M+ GYG +G   +A+ +   M+   V
Sbjct: 402 GTALVDMYSKCGSLACSRRVFDEMPDKSLVSWSAMVAGYGLHGRGREAISILDGMKANSV 461

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
            P+   F   LSAC HAGLV +G+EIF  ME++Y++KP + HY+CMVDLLGRAG L++A 
Sbjct: 462 IPDNGVFTSILSACSHAGLVVEGKEIFYKMEKEYNVKPALSHYSCMVDLLGRAGHLDEAY 521

Query: 407 KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
             +  M  KP SD+WAALL++ RLH ++++A I+A ++F +N      +Y+ LSN  AA 
Sbjct: 522 VIIRTMEIKPTSDIWAALLTASRLHKNIKLAEISAQKVFDMNPK-VVSSYICLSNIYAAE 580

Query: 467 GKWDSVTELREKMKLRGVLKDTGCSWV 493
            +WD V  +R  ++ +G+ K  GCS++
Sbjct: 581 KRWDDVERVRAMVRRKGLKKSPGCSFI 607


>gi|414586388|tpg|DAA36959.1| TPA: hypothetical protein ZEAMMB73_269943 [Zea mays]
          Length = 643

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 159/477 (33%), Positives = 258/477 (54%), Gaps = 30/477 (6%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLK--CGALKYAG--- 100
            SLP+AL+          G  +HA   ++G   +   +  LL L+ K  C  L   G   
Sbjct: 51  ASLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKVPCSYLDSTGVAI 110

Query: 101 --------------QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDG 146
                         ++FDE+ +R + ++N ++ G  + G+  E+L  VRK+   G RPD 
Sbjct: 111 VDVPGSSTAFESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALGFVRKMCREGFRPDS 170

Query: 147 YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR 206
           +T S +L     C     + R L   VH    +    +D  + ++L+D Y    +T Y+ 
Sbjct: 171 FTLSTVLPIFAEC---ADVKRGLE--VHGFAFRNGFDSDVFVGSSLIDMYANCTRTDYSV 225

Query: 207 IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISI 262
            VFD +  ++ I   S+++G    G VE+A  IFR+ ++  +    V ++++I     ++
Sbjct: 226 KVFDNLPVRDHILWNSLLAGCAQNGSVEEALGIFRRMLQAGVRPVPVTFSSLIP-VCGNL 284

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
            + R   ++H  +I   F ++V + S+L+DMY KCG+I  A  +FD M   +V +WT+MI
Sbjct: 285 ASLRFGKQLHAYVICGGFEDNVFISSSLIDMYCKCGEISIAHCIFDKMSSPDVVSWTAMI 344

Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382
            GY  +G   +AL LF  M+    +PN++TFL  L+AC HAGLVDKG + F+SM   Y +
Sbjct: 345 MGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSNHYGI 404

Query: 383 KPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAAN 442
            P +EH+A + D LGRAG L++A  F+ +M  KP + VW+ LL +CR+H +  +A   A 
Sbjct: 405 VPTLEHFAALADTLGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAK 464

Query: 443 EIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           +I +L      G++V LSN  +A+G+W+    LRE M+ +G+ KD  CSW+  +S L
Sbjct: 465 KIMELEPRS-IGSHVVLSNMYSASGRWNEAAHLRESMRKKGMKKDPACSWIEVKSKL 520


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/435 (34%), Positives = 249/435 (57%), Gaps = 12/435 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH  + ++G   +  +S  L+ ++ KCG L+ A ++F+++ ++ + ++N MIAGY  
Sbjct: 418 GKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSL 477

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G  +  + L R++   G RP   T S IL A  C RS   +   LG+ +H  I++  V+
Sbjct: 478 KGDSKSCIELFRRMDEEGIRPTLTTLSSILMA--CSRS---VNLQLGKFIHGYIIRNRVE 532

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
           AD  + ++L+D Y K G    A  VF  M + NV+    MISG++  G   +A  IF   
Sbjct: 533 ADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDM 592

Query: 241 -RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            +  V+ D + + +++   S  +    K  E+H  +I++    +  +  AL+DMYAKCG 
Sbjct: 593 RKAGVKPDAITFTSVLPACS-QLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGA 651

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +D+A  +F+ + +++  +WTSMI  YG +G   +AL+LF  MQ+   +P+ VTFL  LSA
Sbjct: 652 VDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSA 711

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNS 418
           C HAGLVD+G   F  M  +Y  KP +EHY+C++DLLGR G L +A + +   P+ + + 
Sbjct: 712 CSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDV 771

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            + + L S+C LH  +++       + + + +D P  Y+ LSN  A+  KWD V ++R K
Sbjct: 772 GLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDD-PSTYIILSNMYASVKKWDEVRKVRLK 830

Query: 479 MKLRGVLKDTGCSWV 493
           +K  G+ K+ GCSW+
Sbjct: 831 IKELGLKKNPGCSWI 845



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 142/275 (51%), Gaps = 17/275 (6%)

Query: 169 LGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM 228
           LG+++H +I+   ++ +  L  +L++ Y        A++VF  +  +N +   ++ +G M
Sbjct: 213 LGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTI--ENPL-DITLWNGLM 269

Query: 229 SQG-----FVEDAEEIFR----KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
           +       F+E  E   R      ++ D   Y ++++  S  +        VH  +IK+ 
Sbjct: 270 AACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACS-GLGRVGYGKMVHTHVIKSG 328

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
           F  DV + S+ V MYAKC   +DA ++FD M +++V +W ++I  Y ++G P +ALELF 
Sbjct: 329 FAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFE 388

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD-YSMKPKMEHYACMVDLLGR 398
            M+    +P+ VT    +S+C     +++G+EI   + R  +++   +   + +VD+ G+
Sbjct: 389 EMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVS--SALVDMYGK 446

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDD 433
            G LE A K V E  ++ N   W ++++   L  D
Sbjct: 447 CGCLEMA-KEVFEQIQRKNVVSWNSMIAGYSLKGD 480



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 133/268 (49%), Gaps = 9/268 (3%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           T T+L S L     S     G  IH +I +  V+ +  ++  L+ L+ KCG +  A  +F
Sbjct: 499 TLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVF 558

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
             +P+  + ++N MI+GY+K G   E+L +   +  +G +PD  TF+ +L A   C    
Sbjct: 559 QNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPA---CSQLA 615

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
            L +  G+ +H  I++  ++ ++V+  AL+D Y K G    A  +F+ + E++ +  TSM
Sbjct: 616 VLEK--GKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSM 673

Query: 224 ISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNV 279
           I+ + S G   +A ++F K  + D     V + A++   S +          +  + +  
Sbjct: 674 IAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYG 733

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVF 307
           F   V+  S L+D+  + G++ +A  + 
Sbjct: 734 FKPAVEHYSCLIDLLGRVGRLREAYEIL 761


>gi|359483532|ref|XP_002265722.2| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 824

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 152/439 (34%), Positives = 244/439 (55%), Gaps = 8/439 (1%)

Query: 57  NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNY 116
           N+     G  +H +  K        ++  LL ++ K G L  A Q+F+ + +R++ ++  
Sbjct: 263 NTGMLLLGRALHGYAIKASFGKELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTS 322

Query: 117 MIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
           MIAGY + G  + S+ L  ++   G  PD +T + IL A  C      L  N G+ VH  
Sbjct: 323 MIAGYAREGLSDMSVRLFHEMEKEGISPDIFTITTILHACAC----TGLLEN-GKDVHNY 377

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
           I +  +++D  +  AL+D Y K G    A  VF  M  K+++   +MI G+       +A
Sbjct: 378 IKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEMQVKDIVSWNTMIGGYSKNSLPNEA 437

Query: 237 EEIFRKTV--EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
             +F +     K   +  A I     S+    +  E+H  +++N F  D  + +ALVDMY
Sbjct: 438 LNLFVEMQYNSKPNSITMACILPACASLAALERGQEIHGHILRNGFSLDRHVANALVDMY 497

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
            KCG +  AR +FD + +K++ +WT MI GYG +G  ++A+  F  M+   ++P+ V+F+
Sbjct: 498 LKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNEMRNSGIEPDEVSFI 557

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             L AC H+GL+D+G   F  M  +  ++PK EHYAC+VDLL RAG+L +A KF+  MP 
Sbjct: 558 SILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAGNLSKAYKFIKMMPI 617

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
           +P++ +W ALL  CR++ DV++A   A  +F+L   +  G YV L+N  A A KW+ V +
Sbjct: 618 EPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEP-ENTGYYVLLANIYAEAEKWEEVKK 676

Query: 475 LREKMKLRGVLKDTGCSWV 493
           LRE++  RG+ K+ GCSW+
Sbjct: 677 LRERIGRRGLRKNPGCSWI 695



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 118/436 (27%), Positives = 203/436 (46%), Gaps = 66/436 (15%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH+ I    V+ +  +  KL+ +++ CG L+   ++FD++    +  +N ++ GY K
Sbjct: 120 GRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAK 179

Query: 124 NGQVEESLSLVRKL---------------------------------VSSGERPDGYTF- 149
            G   ESLSL +++                                 VS+G    G    
Sbjct: 180 IGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLSEKGLDLF 239

Query: 150 -------------SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196
                        +M+   + C  + + L   LGR +H   +K     +  L   L+D Y
Sbjct: 240 EQMLLLGINTDLATMVSVVAGCSNTGMLL---LGRALHGYAIKASFGKELTLNNCLLDMY 296

Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYN 252
            K G  + A  VF+ M E++V+  TSMI+G+  +G  + +  +F    ++ +  DI    
Sbjct: 297 SKSGNLNSAIQVFETMGERSVVSWTSMIAGYAREGLSDMSVRLFHEMEKEGISPDIFTIT 356

Query: 253 AMIEGYSIS--IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM 310
            ++   + +  +E  +   +VH  + +N    D+ + +AL+DMYAKCG + DA  VF  M
Sbjct: 357 TILHACACTGLLENGK---DVHNYIKENKMQSDLFVSNALMDMYAKCGSMGDAHSVFSEM 413

Query: 311 QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR 370
           Q K++ +W +MI GY KN  PN+AL LF  MQ    +PN +T    L AC     +++G+
Sbjct: 414 QVKDIVSWNTMIGGYSKNSLPNEALNLFVEMQYNS-KPNSITMACILPACASLAALERGQ 472

Query: 371 EIFESMERD-YSMKPKMEHYA-CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
           EI   + R+ +S+     H A  +VD+  + G+L  A      +PEK +   W  +++  
Sbjct: 473 EIHGHILRNGFSLD---RHVANALVDMYLKCGALGLARLLFDMIPEK-DLVSWTVMIAGY 528

Query: 429 RLHDDVEMANIAANEI 444
            +H     A  A NE+
Sbjct: 529 GMHGYGSEAIAAFNEM 544



 Score = 66.6 bits (161), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 40/130 (30%), Positives = 65/130 (50%), Gaps = 17/130 (13%)

Query: 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
           SI+  R+   +H  +  N    D  LGS LV MY  CG + + RR+FD +  + VF W  
Sbjct: 116 SIQDGRR---IHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNL 172

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQ--------------PNYVTFLGALSACGHAGLV 366
           +++GY K GN  ++L LF  M+E  ++               + +++   +S     GL 
Sbjct: 173 LMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLS 232

Query: 367 DKGREIFESM 376
           +KG ++FE M
Sbjct: 233 EKGLDLFEQM 242


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 152/432 (35%), Positives = 238/432 (55%), Gaps = 11/432 (2%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IH +I +  V  +  +   L+ ++ KC  ++ A ++  +           MI+GY+ NG
Sbjct: 281 EIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNG 340

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           + +E+L   R LV    +P   TFS I  A     +      NLG+ +H  I+K  +   
Sbjct: 341 KNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAA-----LNLGKELHGSIIKTKLDEK 395

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT-- 243
             + +A++D Y K G+   A  VF+ + EK+ IC  SMI+     G   +A  +FR+   
Sbjct: 396 CHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGM 455

Query: 244 --VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
                D V  +  +   + ++       E+H  +IK     D+   S+L+DMYAKCG ++
Sbjct: 456 EGTRYDCVSISGALSACA-NLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLN 514

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            +RRVFD MQ++N  +W S+I  YG +G+  + L LF  M    +QP++VTFLG +SACG
Sbjct: 515 FSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACG 574

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
           HAG VD+G   +  M  +Y +  +MEHYAC+ D+ GRAG L++A + +  MP  P++ VW
Sbjct: 575 HAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSMPFPPDAGVW 634

Query: 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
             LL +C +H +VE+A +A+  +F L+  +  G YV L+N  A AGKW  V ++R  MK 
Sbjct: 635 GTLLGACHIHGNVELAEVASKHLFDLDPLN-SGYYVLLANVQAGAGKWRKVLKVRSIMKE 693

Query: 482 RGVLKDTGCSWV 493
           RGV K  G SW+
Sbjct: 694 RGVRKVPGYSWI 705



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/411 (27%), Positives = 210/411 (51%), Gaps = 12/411 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H      G++ ++ ++  LL ++ KC  L+ A ++FD  PQ  L ++N +I+GY++
Sbjct: 178 GTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQ 237

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG + E+  L R ++S+G +PD  TF+  L        N  L     + +H  I++  V 
Sbjct: 238 NGLMGEAEHLFRGMISAGIKPDSITFASFLPC-----VNELLSLKHCKEIHGYIIRHAVV 292

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  L +AL+D Y K      A+ +       + +  T+MISG++  G  ++A E FR  
Sbjct: 293 LDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWL 352

Query: 244 VEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           V++ +    V ++++   ++  +       E+H  +IK    E   +GSA++DMYAKCG+
Sbjct: 353 VQERMKPTSVTFSSIFPAFA-GLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGR 411

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +D A RVF+ + +K+   W SMI    +NG P +A+ LF  M     + + V+  GALSA
Sbjct: 412 LDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSA 471

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C +   +  G+EI   M +   ++  +   + ++D+  + G+L  + +    M E+ N  
Sbjct: 472 CANLPALHYGKEIHGLMIKG-PLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQER-NEV 529

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
            W +++S+   H D++      +E+ +         ++ + +    AG+ D
Sbjct: 530 SWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVD 580



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 197/415 (47%), Gaps = 32/415 (7%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H  +   G+K +  +   L+ L+ + G L  A  +FD +PQ+    +N M+ GY+K
Sbjct: 77  GKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVK 136

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG    ++ +  ++  S  +P+  TF+ +L   + C S   L  +LG  +H   + C ++
Sbjct: 137 NGDSGNAIKIFLEMRHSEIKPNSVTFACVL---SVCASEAML--DLGTQLHGIAVSCGLE 191

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +   L+  Y K      AR +FD   + +++    +ISG++  G + +AE +FR  
Sbjct: 192 LDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGM 251

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               ++ D + + + +   +  + + +   E+H  +I++    DV L SAL+D+Y KC  
Sbjct: 252 ISAGIKPDSITFASFLPCVN-ELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRD 310

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ++ A+++       +    T+MI GY  NG   +ALE F  + +  ++P  VTF     A
Sbjct: 311 VEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPA 370

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
                 ++ G+E+  S+ +   +  K    + ++D+  + G L+ A +    + EK ++ 
Sbjct: 371 FAGLAALNLGKELHGSIIKT-KLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEK-DAI 428

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG-KWDSVT 473
            W ++++SC                   + N RPG  + L   +   G ++D V+
Sbjct: 429 CWNSMITSC-------------------SQNGRPGEAINLFRQMGMEGTRYDCVS 464



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 139/269 (51%), Gaps = 10/269 (3%)

Query: 89  LHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYT 148
           ++++ G+LK A  +F  L     SA+N+MI G+   GQ   +L    K++ +G  PD YT
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIV 208
           F  ++KA  CC         +G++VH  +    +K D  + ++L+  Y + G  S A+ +
Sbjct: 61  FPYVVKA--CCGLK---SVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYL 115

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKA 268
           FD + +K+ +    M++G++  G   +A +IF +    +I   N++     +S+  +   
Sbjct: 116 FDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKP-NSVTFACVLSVCASEAM 174

Query: 269 LEVHCQL----IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
           L++  QL    +      D  + + L+ MY+KC  +  AR++FD   Q ++ +W  +I G
Sbjct: 175 LDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISG 234

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTF 353
           Y +NG   +A  LF  M    ++P+ +TF
Sbjct: 235 YVQNGLMGEAEHLFRGMISAGIKPDSITF 263



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 60/110 (54%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
            S+  AL    N     YG +IH  + K  ++ +      L+ ++ KCG L ++ ++FD 
Sbjct: 463 VSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDR 522

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           + +R   ++N +I+ Y  +G ++E L+L  +++ +G +PD  TF  I+ A
Sbjct: 523 MQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISA 572



 Score = 47.8 bits (112), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 2/134 (1%)

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           MY + G + DA+ +F  +Q      W  MI G+   G  N AL  +  M    V P+  T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
           F   + AC     V  G+ + E++     +K  +   + ++ L    G L  A      +
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNL-MGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 413 PEKPNSDVWAALLS 426
           P+K +S +W  +L+
Sbjct: 120 PQK-DSVLWNVMLN 132


>gi|15227619|ref|NP_180537.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75100656|sp|O82380.1|PP175_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g29760, chloroplastic; Flags: Precursor
 gi|3582328|gb|AAC35225.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253207|gb|AEC08301.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 738

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 150/463 (32%), Positives = 251/463 (54%), Gaps = 41/463 (8%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H    K+ V  +  ++  L+  +  CG L  A ++F  + ++ + ++N MI G+++
Sbjct: 150 GQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQ 209

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G  +++L L +K+ S   +    T   +L A    R+        GR V + I +  V 
Sbjct: 210 KGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRN-----LEFGRQVCSYIEENRVN 264

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +  L  A++D Y K G    A+ +FD M EK+ +  T+M+ G+      E A E+    
Sbjct: 265 VNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSM 324

Query: 244 VEKDIVVYNAMIEGY-------------------------------SISIETARKALE-- 270
            +KDIV +NA+I  Y                               ++S      ALE  
Sbjct: 325 PQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELG 384

Query: 271 --VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
             +H  + K+    +  + SAL+ MY+KCG ++ +R VF+ +++++VF W++MI G   +
Sbjct: 385 RWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMH 444

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G  N+A+++F  MQE  V+PN VTF     AC H GLVD+   +F  ME +Y + P+ +H
Sbjct: 445 GCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKH 504

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
           YAC+VD+LGR+G LE+A+KF+  MP  P++ VW ALL +C++H ++ +A +A   + +L 
Sbjct: 505 YACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELE 564

Query: 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
             +  GA+V LSN  A  GKW++V+ELR+ M++ G+ K+ GCS
Sbjct: 565 PRN-DGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCS 606



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 128/478 (26%), Positives = 223/478 (46%), Gaps = 53/478 (11%)

Query: 30  PPKLQNYDSLSNPLTATSLPSALQH--YINSDTPFYGLK-IHAHITKTGVKPNTNISIKL 86
           P  L  + + SNP   T+     +H   I        LK  H H+ +TG   +   + KL
Sbjct: 9   PLSLPRHPNFSNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKL 68

Query: 87  LILHL--KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE-R 143
             +       +L+YA ++FDE+P+    A+N +I  Y        S+     +VS  +  
Sbjct: 69  FAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCY 128

Query: 144 PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTS 203
           P+ YTF  ++KA+    S      +LG+ +H   +K  V +D  +  +L+  Y   G   
Sbjct: 129 PNKYTFPFLIKAAAEVSS-----LSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLD 183

Query: 204 YARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIE 263
            A  VF  + EK+V+   SMI+GF+ +G  + A E+F+K   +D+   +  + G   +  
Sbjct: 184 SACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACA 243

Query: 264 TARK---ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
             R      +V   + +N    ++ L +A++DMY KCG I+DA+R+FD M++K+  TWT+
Sbjct: 244 KIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTT 303

Query: 321 MIDGYG-------------------------------KNGNPNQALELFCMMQ-ECCVQP 348
           M+DGY                                +NG PN+AL +F  +Q +  ++ 
Sbjct: 304 MLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKL 363

Query: 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKF 408
           N +T +  LSAC   G ++ GR I  S  + + ++      + ++ +  + G LE++ + 
Sbjct: 364 NQITLVSTLSACAQVGALELGRWI-HSYIKKHGIRMNFHVTSALIHMYSKCGDLEKS-RE 421

Query: 409 VLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN-ANDRPGAYVALSNTLAA 465
           V    EK +  VW+A++    +H      N A +  +K+  AN +P   V  +N   A
Sbjct: 422 VFNSVEKRDVFVWSAMIGGLAMHG---CGNEAVDMFYKMQEANVKPNG-VTFTNVFCA 475


>gi|359491266|ref|XP_002280289.2| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 663

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 161/467 (34%), Positives = 246/467 (52%), Gaps = 44/467 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSA-YNYMIAGYLKN 124
           +IHA +   G+  NT++   L+  ++ C  L +A  +FD+ P    +  +N MI  Y K 
Sbjct: 73  QIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNLMIQAYSKT 132

Query: 125 GQVEESLSLVRKLVSSGERP---DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
              +ESL L  ++++ G RP   D YTF+ +  A  C R   P  R  G  VH  ++K  
Sbjct: 133 PSSQESLYLFHQMLAHG-RPTSADKYTFTFVFTA--CSRH--PTLRGYGENVHGMVVKDG 187

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
            ++D  +  +LV+ Y    +   A+ VFD M +++VI  TS++ G+  +G +  A E+F 
Sbjct: 188 YESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFD 247

Query: 242 KTVEKDIVVYNAMIEGYS----------------------------ISIETARKAL---- 269
               ++ V +  M+ GY                             +SI +A   L    
Sbjct: 248 MMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALD 307

Query: 270 ---EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
               +H  + KN       + +AL+DMYAKCG+ID ARRVFD + ++++ TWTSMI G  
Sbjct: 308 QGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISGLS 367

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM 386
            +G   + L  F  M     +P+ +T LG L+ C H+GLV++G  IF  M   + + PK+
Sbjct: 368 MHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCSHSGLVEEGLSIFHDMIPLWGIVPKL 427

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446
           EHY C++DLLGRAG LE A + +  MP +P+   W ALLS+CR+H DV++     N I +
Sbjct: 428 EHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERIINHIAE 487

Query: 447 LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           L      G YV LSN  A+ G+W+SVT++R+ M  RG     GCSW+
Sbjct: 488 LCPGSHGGGYVLLSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWI 534



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/301 (24%), Positives = 137/301 (45%), Gaps = 43/301 (14%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM--LEKNVICSTSMISGFM 228
           + +HAQ++   +  +  L   L+ SY+     S+ARIVFD    L   +I +  MI  + 
Sbjct: 72  KQIHAQVVTHGLAQNTSLLGPLIHSYIGCRNLSFARIVFDQFPSLPPTIIWNL-MIQAYS 130

Query: 229 SQGFVEDAEEIFRKTV------EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
                +++  +F + +        D   +  +    S           VH  ++K+ +  
Sbjct: 131 KTPSSQESLYLFHQMLAHGRPTSADKYTFTFVFTACSRHPTLRGYGENVHGMVVKDGYES 190

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           D+ +G++LV+MY+   ++ DA+RVFD M Q++V TWTS++ GY   G   +A ELF MM 
Sbjct: 191 DIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYAMRGELVRARELFDMMP 250

Query: 343 ------------------------EC-----C---VQPNYVTFLGALSACGHAGLVDKGR 370
                                   +C     C   V+PN    +  LSAC H G +D+G+
Sbjct: 251 GRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQGK 310

Query: 371 EIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRL 430
            I   ++++  +       A ++D+  + G ++ A + V +   K +   W +++S   +
Sbjct: 311 WIHVYIDKNRILLSSNISTA-LIDMYAKCGRIDCARR-VFDGLHKRDLLTWTSMISGLSM 368

Query: 431 H 431
           H
Sbjct: 369 H 369



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 94/464 (20%), Positives = 168/464 (36%), Gaps = 95/464 (20%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           YG  +H  + K G + +  +   L+ ++     +  A ++FDE+PQR +  +  ++ GY 
Sbjct: 175 YGENVHGMVVKDGYESDIFVGNSLVNMYSIFSRMVDAKRVFDEMPQRDVITWTSVVKGYA 234

Query: 123 KNGQVEESLSLV-----RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL-------- 169
             G++  +  L      R  VS      GY        +  C +++     +        
Sbjct: 235 MRGELVRARELFDMMPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLV 294

Query: 170 --------------GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
                         G+ +H  I K  +     + TAL+D Y K G+   AR VFD + ++
Sbjct: 295 SILSACAHLGALDQGKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKR 354

Query: 216 NVICSTSMISGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV 271
           +++  TSMISG    G   +      E+  +  + D +    ++ G S            
Sbjct: 355 DLLTWTSMISGLSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNGCS------------ 402

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
           H  L++    E + +   ++ ++    K++                +  +ID  G+ G  
Sbjct: 403 HSGLVE----EGLSIFHDMIPLWGIVPKLEH---------------YGCLIDLLGRAGRL 443

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC 391
             A E    M    ++P+ V +   LSAC   G VD G  I   +  +         Y  
Sbjct: 444 ESAFEAIKSMP---MEPDVVAWRALLSACRIHGDVDLGERIINHIA-ELCPGSHGGGYVL 499

Query: 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDV----WAAL-------LSSCRLHDDVEMANIA 440
           + +L    G  E   K    M ++ +       W  +       L++ +LH  +   N  
Sbjct: 500 LSNLYASMGQWESVTKVRKAMSQRGSEGCPGCSWIEIDGVVHEFLAADKLHPRISEINKK 559

Query: 441 ANEI------------------FKLNANDRPGAYVALSNTLAAA 466
            NE+                  F LN  D+  A    S  LA A
Sbjct: 560 LNEVLRRISIEGGYVPSTKQVLFDLNEEDKEQAVSWHSEKLAVA 603



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 60/246 (24%), Positives = 103/246 (41%), Gaps = 8/246 (3%)

Query: 1   MPNLSRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDT 60
           MP  + +  +V  + +  H       Q F   L + +   N     S+ SA  H    D 
Sbjct: 249 MPGRNDVSWAVMVAGYVGHRFYNEALQCFNDMLCHDEVKPNEAVLVSILSACAHLGALDQ 308

Query: 61  PFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120
              G  IH +I K  +  ++NIS  L+ ++ KCG +  A ++FD L +R L  +  MI+G
Sbjct: 309 ---GKWIHVYIDKNRILLSSNISTALIDMYAKCGRIDCARRVFDGLHKRDLLTWTSMISG 365

Query: 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
              +G   E L    ++++ G +PD  T   +L     C  +  +   L  + H  I   
Sbjct: 366 LSMHGLGAECLWTFSEMLAEGFKPDDITLLGVLNG---CSHSGLVEEGLS-IFHDMIPLW 421

Query: 181 DVKADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
            +      Y  L+D   + G+   A   +  M +E +V+   +++S     G V+  E I
Sbjct: 422 GIVPKLEHYGCLIDLLGRAGRLESAFEAIKSMPMEPDVVAWRALLSACRIHGDVDLGERI 481

Query: 240 FRKTVE 245
                E
Sbjct: 482 INHIAE 487


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 165/482 (34%), Positives = 258/482 (53%), Gaps = 43/482 (8%)

Query: 22  LVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTN 81
           +VP   T+P  L+   +L     AT L               G +IH  + KTG + N  
Sbjct: 434 IVPNQFTYPSILKTCTTLG----ATDL---------------GEQIHTQVLKTGFQFNVY 474

Query: 82  ISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG 141
           +S  L+ ++ K G L +A ++F  L +  + ++  MIAGY ++ +  E+L+L +++   G
Sbjct: 475 VSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQG 534

Query: 142 ERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK 201
            + D   F+  + A   C     L +  GR +HAQ        D  +  ALV  Y + GK
Sbjct: 535 IKSDNIGFASAISA---CAGIQALDQ--GRQIHAQSCLSGYSDDLSIGNALVSLYARCGK 589

Query: 202 TSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS 261
              A   FD +  K+ +   S++SGF   G+ E+A  IF +  +  + + N+   G ++S
Sbjct: 590 VREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEI-NSFTFGSAVS 648

Query: 262 ----IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT 317
               I   R   ++H  + K  +  + ++ +AL+ +YAKCG IDD              +
Sbjct: 649 AAANIANVRIGKQIHGMIRKTGYDSETEVSNALITLYAKCGTIDD-------------IS 695

Query: 318 WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377
           W SMI GY ++G   +AL+LF  M++  V PN+VTF+G LSAC H GLVD+G   F SM 
Sbjct: 696 WNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTFVGVLSACSHVGLVDEGISYFRSMS 755

Query: 378 RDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
             +++ PK EHYAC+VDLLGR+G L +A +FV EMP +P++ VW  LLS+C +H ++++ 
Sbjct: 756 EAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMPIQPDAMVWRTLLSACNVHKNIDIG 815

Query: 438 NIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTES 497
             AA+ + +L   D    YV +SN  A +GKWD     R+ MK RGV K+ G SWV  ++
Sbjct: 816 EFAASHLLELEPKD-SATYVLVSNMYAVSGKWDCRDRTRQMMKDRGVKKEPGRSWVEVDN 874

Query: 498 GL 499
            +
Sbjct: 875 SV 876



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 114/433 (26%), Positives = 212/433 (48%), Gaps = 37/433 (8%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G ++H  + K G    T +   L+ L+ + G L  A Q+F  + QR   +YN +I+G  
Sbjct: 269 FGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLA 328

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           + G +  +L+L +K+    ++PD  T + +L A   C S   LP   G+  H+  +K  +
Sbjct: 329 QQGYINRALALFKKMNLDCQKPDCVTVASLLSA---CASVGALPN--GKQFHSYAIKAGM 383

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            +D V+  +L+D YVK      A   F        +C   + +  +++ F     +IF +
Sbjct: 384 TSDIVVEGSLLDLYVKCSDIKTAHEFF--------LCYGQLDN--LNKSF-----QIFTQ 428

Query: 243 TVEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
              + IV     Y ++++  + ++       ++H Q++K  F  +V + S L+DMYAK G
Sbjct: 429 MQIEGIVPNQFTYPSILKTCT-TLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHG 487

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           K+D A ++F  +++ +V +WT+MI GY ++    +AL LF  MQ+  ++ + + F  A+S
Sbjct: 488 KLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAIS 547

Query: 359 ACGHAGLVDKGREIF-ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           AC     +D+GR+I  +S    YS    + +   +V L  R G + +A     ++  K N
Sbjct: 548 ACAGIQALDQGRQIHAQSCLSGYSDDLSIGN--ALVSLYARCGKVREAYAAFDQIYAKDN 605

Query: 418 SDVWAALLSSCRLHDDVEMA-NIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
              W +L+S        E A NI A    ++N            + ++AA    ++  +R
Sbjct: 606 VS-WNSLVSGFAQSGYFEEALNIFA----QMNKAGLEINSFTFGSAVSAAA---NIANVR 657

Query: 477 EKMKLRGVLKDTG 489
              ++ G+++ TG
Sbjct: 658 IGKQIHGMIRKTG 670



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 97/434 (22%), Positives = 189/434 (43%), Gaps = 40/434 (9%)

Query: 84  IKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGER 143
           +KL+  +L  G L  A  +FDE+P R+LS +N +   ++    +     L R++++    
Sbjct: 101 LKLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVE 160

Query: 144 PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTS 203
            D   F+++L+    C  N    R +   +HA+ +    ++   +   L+D Y K G  S
Sbjct: 161 FDERIFAVVLRG---CSGNAVSFRFV-EQIHAKTITSGFESSTFICNPLIDLYFKNGFLS 216

Query: 204 YARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIE 263
            A+ VF+ +  ++ +   +MISG    G+ E+A           ++++  ++      +E
Sbjct: 217 SAKKVFENLKARDSVSWVAMISGLSQNGYEEEA-----------MLLFCQIVLSACTKVE 265

Query: 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMID 323
                 ++H  ++K  F  +  + +ALV +Y++ G +  A ++F  M Q++  ++ S+I 
Sbjct: 266 FFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLIS 325

Query: 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK 383
           G  + G  N+AL LF  M   C +P+ VT    LSAC   G +  G++ F S      M 
Sbjct: 326 GLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQ-FHSYAIKAGMT 384

Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVL----------------EMPEK---PNSDVWAAL 424
             +     ++DL  +   ++ A +F L                +M  +   PN   + ++
Sbjct: 385 SDIVVEGSLLDLYVKCSDIKTAHEFFLCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSI 444

Query: 425 LSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGV 484
           L +C      ++      ++ K            L +  A  GK D   ++  ++K   V
Sbjct: 445 LKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDV 504

Query: 485 LKDTGCSWVGTESG 498
           +     SW    +G
Sbjct: 505 V-----SWTAMIAG 513



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 160/372 (43%), Gaps = 43/372 (11%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IHA    +G + +T I   L+ L+ K G L  A ++F+ L  R   ++  MI+G  +NG
Sbjct: 185 QIHAKTITSGFESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNG 244

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             EE++ L  ++V                 S C +         G+ +H  +LK    ++
Sbjct: 245 YEEEAMLLFCQIV----------------LSACTKVEF---FEFGKQLHGLVLKQGFSSE 285

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT-- 243
             +  ALV  Y + G  S A  +F  M +++ +   S+ISG   QG++  A  +F+K   
Sbjct: 286 TYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNL 345

Query: 244 -VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
             +K   V  A +     S+       + H   IK     D+ +  +L+D+Y KC  I  
Sbjct: 346 DCQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKT 405

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           A   F                 YG+  N N++ ++F  MQ   + PN  T+   L  C  
Sbjct: 406 AHEFF---------------LCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTT 450

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV-- 420
            G  D G +I   + +    +  +   + ++D+  + G L+ ALK    + E   +DV  
Sbjct: 451 LGATDLGEQIHTQVLKT-GFQFNVYVSSVLIDMYAKHGKLDHALKIFRRLKE---NDVVS 506

Query: 421 WAALLSSCRLHD 432
           W A+++    HD
Sbjct: 507 WTAMIAGYTQHD 518


>gi|115457318|ref|NP_001052259.1| Os04g0218100 [Oryza sativa Japonica Group]
 gi|113563830|dbj|BAF14173.1| Os04g0218100, partial [Oryza sativa Japonica Group]
          Length = 890

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 161/490 (32%), Positives = 259/490 (52%), Gaps = 66/490 (13%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++H +  + G  P+  +   L+  + KCG ++ A ++F+ +  + + ++N M+AGY ++G
Sbjct: 286 EVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSG 345

Query: 126 QVE-----------------------------------ESLSLVRKLVSSGERPDGYTFS 150
             E                                   E+L+L R+++ SG  P+  T  
Sbjct: 346 NFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTII 405

Query: 151 MILKASTCCRSNVPLPRNLGRMVHAQILK-CDVKADD---------VLYTALVDSYVKGG 200
            +L A   C S     +  G  +HA  LK C +  D+         ++Y AL+D Y K  
Sbjct: 406 SVLSA---CASLGAFSQ--GTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 460

Query: 201 KTSYARIVFD--MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY 258
               AR +FD   + E+NV+  T MI G    G   DA ++F + + +    Y      Y
Sbjct: 461 SFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP---YGVAPNAY 517

Query: 259 SIS--------IETARKALEVHCQLIKNVFFEDVK--LGSALVDMYAKCGKIDDARRVFD 308
           +IS        +   R   ++H  ++++  +E     + + L+DMY+KCG +D AR VFD
Sbjct: 518 TISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFD 577

Query: 309 HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDK 368
            M QK+  +WTSM+ GYG +G  ++AL++F  M++    P+ +TFL  L AC H G+VD+
Sbjct: 578 SMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQ 637

Query: 369 GREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
           G   F+SM  DY + P+ EHYAC +DLL R+G L++A + V +MP +P + VW ALLS+C
Sbjct: 638 GLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSAC 697

Query: 429 RLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDT 488
           R+H +VE+A  A N++ ++NA +  G+Y  +SN  A AG+W  V  +R  MK  G+ K  
Sbjct: 698 RVHSNVELAEHALNKLVEMNA-ENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRP 756

Query: 489 GCSWVGTESG 498
           GCSWV  + G
Sbjct: 757 GCSWVQGQKG 766



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 178/393 (45%), Gaps = 62/393 (15%)

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149
           +L CGA  YA  + + +       +N +I  ++K G+++ ++++  +++ +G RPD +T 
Sbjct: 99  YLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTL 158

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVF 209
             +LKA       +P  R  G   H  I     +++  +  ALV  Y + G    A ++F
Sbjct: 159 PHVLKAC----GELPSYR-CGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 213

Query: 210 DMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRK---------TVEKDIVVYNAMIEG 257
           D + ++   +VI   S++S  +       A ++F K         T E+  ++    I  
Sbjct: 214 DEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILP 273

Query: 258 YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT 317
              S++   +  EVH   I+N  F DV +G+AL+D YAKCG +++A +VF+ M+ K+V +
Sbjct: 274 ACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVS 333

Query: 318 WTSMIDGYGKNGNPNQALELFCMM--------------------QECCVQ---------- 347
           W +M+ GY ++GN   A ELF  M                    Q  C            
Sbjct: 334 WNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMI 393

Query: 348 -----PNYVTFLGALSACGHAGLVDKGREIFE--------SMERDYSMKPK-MEHYACMV 393
                PN VT +  LSAC   G   +G EI          +++ D+  + + +  Y  ++
Sbjct: 394 FSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALI 453

Query: 394 DLLGRAGSLEQALKFVLEMP-EKPNSDVWAALL 425
           D+  +  S + A     ++P E+ N   W  ++
Sbjct: 454 DMYSKCRSFKAARSIFDDIPLEERNVVTWTVMI 486



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 21/192 (10%)

Query: 64  GLKIHAHITKTGVKPNTNISIK--LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           G +IHA++ +     ++   +   L+ ++ KCG +  A  +FD + Q++  ++  M+ GY
Sbjct: 535 GKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGY 594

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
             +G+  E+L +  K+  +G  PD  TF ++L A + C            MV   +   D
Sbjct: 595 GMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHC-----------GMVDQGLSYFD 643

Query: 182 VKADDV-------LYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFV 233
             + D         Y   +D   + G+   A R V DM +E   +   +++S       V
Sbjct: 644 SMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNV 703

Query: 234 EDAEEIFRKTVE 245
           E AE    K VE
Sbjct: 704 ELAEHALNKLVE 715


>gi|225425100|ref|XP_002272744.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 622

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 159/463 (34%), Positives = 245/463 (52%), Gaps = 44/463 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLLIL--HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           +IH  + KTG+  +   + KLL        G+L YA  +FD + +     +N MI GY  
Sbjct: 36  QIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSN 95

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           + + EE+L L   ++      + YTF  +LKA   C S   L     + +HA I+K    
Sbjct: 96  SKEPEEALLLYHHMLYHSVPHNAYTFPFLLKA---CSSMSALEET--QQIHAHIIKMGFG 150

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           ++     +L++ Y K G    AR++FD + +++ +   SMI G+   G +E A EIF   
Sbjct: 151 SEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHM 210

Query: 244 VEKDIVVYNAMIEGYSISIETARKALE--------------------------------- 270
            E++I+ + +MI G  +     ++AL                                  
Sbjct: 211 PERNIISWTSMISG-CVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQG 269

Query: 271 --VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
             +H  + K+    D  LG  L+DMYAKCG +++A  VF  M++K V  WT+MI GY  +
Sbjct: 270 KWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIH 329

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G   +ALE F  MQ   V+PN +TF G L+AC HAGLV + + +FESMER +  KP +EH
Sbjct: 330 GRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEH 389

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
           Y CMVDLLGRAG L++A + +  MP KPN+ +W ALL++C +H ++E+       + +++
Sbjct: 390 YGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVD 449

Query: 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
                G Y+ L++  AAAG+W+    +R +MK +GV K  GCS
Sbjct: 450 PG-HGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCS 491



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 63/115 (54%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L   +L S LQ   +      G  IHA+I K  ++ +  +   L+ ++ KCG L+ A ++
Sbjct: 248 LDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEV 307

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           F ++ ++ +S +  MI+GY  +G+  E+L    K+ ++G  P+  TF+ IL A +
Sbjct: 308 FRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACS 362


>gi|21741755|emb|CAD39781.1| OSJNBa0060B20.9 [Oryza sativa Japonica Group]
          Length = 897

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 161/490 (32%), Positives = 259/490 (52%), Gaps = 66/490 (13%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++H +  + G  P+  +   L+  + KCG ++ A ++F+ +  + + ++N M+AGY ++G
Sbjct: 293 EVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSG 352

Query: 126 QVE-----------------------------------ESLSLVRKLVSSGERPDGYTFS 150
             E                                   E+L+L R+++ SG  P+  T  
Sbjct: 353 NFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMIFSGSLPNCVTII 412

Query: 151 MILKASTCCRSNVPLPRNLGRMVHAQILK-CDVKADD---------VLYTALVDSYVKGG 200
            +L A   C S     +  G  +HA  LK C +  D+         ++Y AL+D Y K  
Sbjct: 413 SVLSA---CASLGAFSQ--GTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 467

Query: 201 KTSYARIVFD--MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY 258
               AR +FD   + E+NV+  T MI G    G   DA ++F + + +    Y      Y
Sbjct: 468 SFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP---YGVAPNAY 524

Query: 259 SIS--------IETARKALEVHCQLIKNVFFEDVK--LGSALVDMYAKCGKIDDARRVFD 308
           +IS        +   R   ++H  ++++  +E     + + L+DMY+KCG +D AR VFD
Sbjct: 525 TISCILMACAHLAAIRIGKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFD 584

Query: 309 HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDK 368
            M QK+  +WTSM+ GYG +G  ++AL++F  M++    P+ +TFL  L AC H G+VD+
Sbjct: 585 SMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQ 644

Query: 369 GREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
           G   F+SM  DY + P+ EHYAC +DLL R+G L++A + V +MP +P + VW ALLS+C
Sbjct: 645 GLSYFDSMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSAC 704

Query: 429 RLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDT 488
           R+H +VE+A  A N++ ++NA +  G+Y  +SN  A AG+W  V  +R  MK  G+ K  
Sbjct: 705 RVHSNVELAEHALNKLVEMNA-ENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRP 763

Query: 489 GCSWVGTESG 498
           GCSWV  + G
Sbjct: 764 GCSWVQGQKG 773



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 178/393 (45%), Gaps = 62/393 (15%)

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149
           +L CGA  YA  + + +       +N +I  ++K G+++ ++++  +++ +G RPD +T 
Sbjct: 106 YLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRPDHFTL 165

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVF 209
             +LKA       +P  R  G   H  I     +++  +  ALV  Y + G    A ++F
Sbjct: 166 PHVLKAC----GELPSYR-CGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 220

Query: 210 DMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRK---------TVEKDIVVYNAMIEG 257
           D + ++   +VI   S++S  +       A ++F K         T E+  ++    I  
Sbjct: 221 DEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILP 280

Query: 258 YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT 317
              S++   +  EVH   I+N  F DV +G+AL+D YAKCG +++A +VF+ M+ K+V +
Sbjct: 281 ACGSLKAVPQTKEVHGNAIRNGTFPDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVS 340

Query: 318 WTSMIDGYGKNGNPNQALELFCMM--------------------QECCVQ---------- 347
           W +M+ GY ++GN   A ELF  M                    Q  C            
Sbjct: 341 WNAMVAGYSQSGNFEAAFELFKNMRKENIPLDVVTWTAVIAGYSQRGCSHEALNLFRQMI 400

Query: 348 -----PNYVTFLGALSACGHAGLVDKGREIFE--------SMERDYSMKPK-MEHYACMV 393
                PN VT +  LSAC   G   +G EI          +++ D+  + + +  Y  ++
Sbjct: 401 FSGSLPNCVTIISVLSACASLGAFSQGTEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALI 460

Query: 394 DLLGRAGSLEQALKFVLEMP-EKPNSDVWAALL 425
           D+  +  S + A     ++P E+ N   W  ++
Sbjct: 461 DMYSKCRSFKAARSIFDDIPLEERNVVTWTVMI 493



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 85/192 (44%), Gaps = 21/192 (10%)

Query: 64  GLKIHAHITKTGVKPNTNISIK--LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           G +IHA++ +     ++   +   L+ ++ KCG +  A  +FD + Q++  ++  M+ GY
Sbjct: 542 GKQIHAYVLRHHRYESSAYFVANCLIDMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGY 601

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
             +G+  E+L +  K+  +G  PD  TF ++L A + C            MV   +   D
Sbjct: 602 GMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHC-----------GMVDQGLSYFD 650

Query: 182 VKADDV-------LYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFV 233
             + D         Y   +D   + G+   A R V DM +E   +   +++S       V
Sbjct: 651 SMSADYGLTPRAEHYACAIDLLARSGRLDKAWRTVKDMPMEPTAVVWVALLSACRVHSNV 710

Query: 234 EDAEEIFRKTVE 245
           E AE    K VE
Sbjct: 711 ELAEHALNKLVE 722


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 146/441 (33%), Positives = 248/441 (56%), Gaps = 41/441 (9%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           L+  +++ G +  A ++FD++P R   ++  MIAGY +NG+ EE+L L+++L  SG  P 
Sbjct: 359 LITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPS 418

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
             + + I  A   C + V L    G  VH+  +K   + +     AL+  Y K     YA
Sbjct: 419 LSSLTSIFFA---CSNIVAL--ETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYA 473

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI----- 260
           R VF  M+ K+++   S ++  +    +++A   F   + +D V +  +I  Y+      
Sbjct: 474 RQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSN 533

Query: 261 -----------------------------SIETARKALEVHCQLIKNVFFEDVKLGSALV 291
                                        S+  ++   ++H   IK     ++ + +AL+
Sbjct: 534 EAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALI 593

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
            MY KCG   D+RR+FD M+++++FTW ++I GY ++G   +A++++  M+   V PN V
Sbjct: 594 SMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEV 652

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
           TF+G L+AC HAGLVD+G + F+SM +DY + P  EHYACMVDLLGR G ++ A +F+ +
Sbjct: 653 TFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYD 712

Query: 412 MPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471
           MP +P++ +W+ALL +C++H + E+   AA ++F++  ++  G YV LSN  ++ G W  
Sbjct: 713 MPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSN-AGNYVMLSNIYSSLGMWGE 771

Query: 472 VTELREKMKLRGVLKDTGCSW 492
           V E+R+ MK +GV+K+ GCSW
Sbjct: 772 VAEVRKIMKQQGVIKEPGCSW 792



 Score =  102 bits (253), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 171/374 (45%), Gaps = 66/374 (17%)

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           + G +  A ++FD +P+R + A+N MI+ Y  NG  + +  L   +     R    T ++
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR----TGAI 101

Query: 152 ILKASTCCRSNVPLPRNLGRMVHA-QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFD 210
           +L               LGR++ A ++    ++ + V + A++  YV+ G  + AR +FD
Sbjct: 102 LLSGYG----------RLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFD 151

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE 270
            M  ++V    SM++G+     + DA  +F K  E+++V +  MI GY   IE   KA +
Sbjct: 152 AMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYG-RIENHGKAWD 210

Query: 271 VHCQL-----------------------------------IKNVFFEDVKLGSALVDMYA 295
           + C++                                   +K  F  DV +G+A++++Y+
Sbjct: 211 IFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYS 270

Query: 296 K-CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM--MQECCVQPNYVT 352
           +    +D A + F+ M ++N +TW++MI      G  + A+ ++    ++    +   +T
Sbjct: 271 RDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALIT 330

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
               L+ CG    +D  R +FE +      +P +  +  ++    + G + +A +   +M
Sbjct: 331 ---GLAQCGR---IDDARILFEQIP-----EPIVVSWNALITGYMQNGMVNEAKELFDKM 379

Query: 413 PEKPNSDVWAALLS 426
           P + N+  WA +++
Sbjct: 380 PFR-NTISWAGMIA 392



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 158/335 (47%), Gaps = 26/335 (7%)

Query: 153 LKASTCCRSNVPLPRNLGRMVHA-QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           L+ S C      L R LGR+  A ++     + D + + +++ +Y   G    AR ++D 
Sbjct: 32  LEVSGCSARIRDLGR-LGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDA 90

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY--SISIETARKAL 269
           +   N+     ++SG+   G V +A  +F   +E++ V +NAMI  Y  +  I  AR+  
Sbjct: 91  ISGGNMRTGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARR-- 148

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
                L   +   DV   ++++  Y    ++ DAR +F+ M ++N+ +WT MI GYG+  
Sbjct: 149 -----LFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIE 203

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH- 388
           N  +A ++FC M    + P+   F  ALSA    G +D    + ES+ R  ++K   E  
Sbjct: 204 NHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLD----VLESL-RVLALKTGFERD 258

Query: 389 ---YACMVDLLGRAGS-LEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
                 ++++  R  S L+ A+KF   M E+ N   W+ ++++      ++    AA  +
Sbjct: 259 VVIGTAILNVYSRDTSVLDTAIKFFESMIER-NEYTWSTMIAALSHGGRID----AAIAV 313

Query: 445 FKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           ++ +         AL   LA  G+ D    L E++
Sbjct: 314 YERDPVKSIACRTALITGLAQCGRIDDARILFEQI 348



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 159/345 (46%), Gaps = 22/345 (6%)

Query: 78  PNTNISIKLLILHLKCGALKY--AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVR 135
           P+ ++S    +L   C +L+   A  +F+++P+R L ++  MI+GY +     ++  +  
Sbjct: 154 PSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFC 213

Query: 136 KLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDS 195
           K+   G  PD   F+  L A      N+ +  +L  +     LK   + D V+ TA+++ 
Sbjct: 214 KMHREGLLPDQSNFASALSAVKGL-GNLDVLESLRVLA----LKTGFERDVVIGTAILNV 268

Query: 196 YVKGGKTSYARI-VFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAM 254
           Y +        I  F+ M+E+N    ++MI+     G ++ A  ++ +   K I    A+
Sbjct: 269 YSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTAL 328

Query: 255 IEGYSI--SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ 312
           I G +    I+ AR   E   Q+ + +    V   +AL+  Y + G +++A+ +FD M  
Sbjct: 329 ITGLAQCGRIDDARILFE---QIPEPI----VVSWNALITGYMQNGMVNEAKELFDKMPF 381

Query: 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           +N  +W  MI GY +NG   +AL L   +    + P+  +      AC +   ++ G ++
Sbjct: 382 RNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQV 441

Query: 373 FESMERDYSMKPKMEHYAC--MVDLLGRAGSLEQALKFVLEMPEK 415
                +   +  +   +AC  ++ + G+  ++E A +    M  K
Sbjct: 442 HSLAVK---VGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTK 483



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH    K G+     ++  L+ ++ KCG    + ++FD + +R +  +N +I GY +
Sbjct: 570 GQQIHTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYAQ 628

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           +G   E++ + + + S+G  P+  TF  +L A +
Sbjct: 629 HGLGREAIKMYQHMESAGVLPNEVTFVGLLNACS 662


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 147/458 (32%), Positives = 255/458 (55%), Gaps = 10/458 (2%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L + +L S L     S   F G  +H +  KTG+   T+++  LL ++  C   +   Q+
Sbjct: 516 LDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQI 575

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           F  + Q+ + ++  MI  Y++ G  ++   L++++V  G RPD +  +  L A     S 
Sbjct: 576 FRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDES- 634

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
                  G+ VH   ++  ++    +  AL++ YVK      AR++FD +  K+VI   +
Sbjct: 635 ----LKQGKSVHGYTIRNGMEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNT 690

Query: 223 MISGFMSQGFVEDAEEIFRKTV---EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
           +I G+    F  ++  +F   +     + V    ++   + SI +  +  E+H   ++  
Sbjct: 691 LIGGYSRNNFPNESFSLFSDMLLQFRPNAVTMTCILPA-AASISSLERGREIHAYALRRG 749

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
           F ED    +ALVDMY KCG +  AR +FD + +KN+ +WT MI GYG +G    A+ LF 
Sbjct: 750 FLEDSYASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFE 809

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
            M+   ++P+  +F   L AC H+GL  +GR  F++M+++Y ++PK++HY C+VDLL R 
Sbjct: 810 QMRGSGIEPDAASFSAILYACCHSGLAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRT 869

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVAL 459
           G L++AL+F+  MP +P+S +W +LL  CR+H +V++A   A+++FKL   +  G YV L
Sbjct: 870 GDLKEALEFIESMPIEPDSSIWVSLLHGCRIHKNVKLAEKVADKVFKLEPEN-TGYYVLL 928

Query: 460 SNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTES 497
           +N  A A +W++V +L+ K+  RG+ ++TG SW+   S
Sbjct: 929 ANIYAEAERWEAVKKLKNKIGGRGLRENTGYSWIEVRS 966



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 86/282 (30%), Positives = 133/282 (47%), Gaps = 23/282 (8%)

Query: 85  KLLILHLKCGALKYAGQMFDELPQRT--LSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE 142
           +L++ +LKCG L  A  +FD +P +   +  +  +++ Y K G  +E++SL R++   G 
Sbjct: 141 RLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGV 200

Query: 143 RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKT 202
            PD +  S +LK   C  S   L    G ++H  + K  +     +  AL+  Y + G+ 
Sbjct: 201 SPDAHAVSCVLK---CVSSLGSLTE--GEVIHGLLEKLGLGQACAVANALIAVYSRCGRM 255

Query: 203 SYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMI------- 255
             A  VFD M  ++ I   SMI G  S G+   A ++F K   +   + +  +       
Sbjct: 256 EDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPAC 315

Query: 256 --EGYSISIETARKALEVHCQLIKNV-----FFEDVKLGSALVDMYAKCGKIDDARRVFD 308
              GY + I  A     V   L+  +       +D  LGS LV MY KCG +  ARRVFD
Sbjct: 316 AGLGYGL-IGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFD 374

Query: 309 HMQQK-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349
            M  K NV  W  ++ GY K G   ++L LF  M E  + P+
Sbjct: 375 AMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPD 416



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 118/439 (26%), Positives = 182/439 (41%), Gaps = 56/439 (12%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH  + K G+     ++  L+ ++ +CG ++ A ++FD +  R   ++N MI G   
Sbjct: 223 GEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFS 282

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG    ++ L  K+ S G      T   +L A  C      L   +G+ VH   +K  + 
Sbjct: 283 NGWHGTAVDLFSKMWSQGTEISSVTVLSVLPA--CAGLGYGL---IGKAVHGYSVKSGLL 337

Query: 184 A----------DDVLYTALVDSYVKGGKTSYARIVFDMMLEK-NVICSTSMISGFMSQGF 232
                      D  L + LV  YVK G  + AR VFD M  K NV     ++ G+   G 
Sbjct: 338 WGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGE 397

Query: 233 VEDAEEIFRKTVEKDIVVYNAMIEGYSISI---ETARKALEVHCQLIKNVFFEDVKLGSA 289
            E++  +F +  E  I      I      I     AR  L  H  ++K  F     + +A
Sbjct: 398 FEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNA 457

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349
           L+  YAK   I DA  VF+ M +++  +W S+I G   NG  ++A+ELF  M     + +
Sbjct: 458 LISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELD 517

Query: 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFV 409
            VT L  L AC  +     GR +       YS+K           L+G   SL  AL   
Sbjct: 518 SVTLLSVLPACAQSRYWFAGRVV-----HGYSVK---------TGLIGET-SLANAL--- 559

Query: 410 LEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKW 469
           L+M    N   W                  + N+IF+        ++ A+  +   AG +
Sbjct: 560 LDM--YSNCSDWQ-----------------STNQIFRSMGQKNVVSWTAMITSYMRAGLF 600

Query: 470 DSVTELREKMKLRGVLKDT 488
           D V  L ++M L G+  D 
Sbjct: 601 DKVAGLLQEMVLDGIRPDV 619



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/337 (25%), Positives = 148/337 (43%), Gaps = 34/337 (10%)

Query: 107 PQRTLSA-YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           P R LS+  N  I    + G +  +L    +L+ S    D  ++ M+++     RS +  
Sbjct: 61  PSRALSSDVNLRIQRLCQAGDLAGAL----RLLGSDGGVDVRSYCMVVQLCGEERS-LEA 115

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK--NVICSTSM 223
            +    ++ A           VL   LV +Y+K G    AR VFD M  +  +V   TS+
Sbjct: 116 AKRAHALIRASSAAATGGKGSVLGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSL 175

Query: 224 ISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
           +S +   G  ++A  +FR+     V  D    + +++  S S+ +  +   +H  L K  
Sbjct: 176 MSAYAKAGDFQEAVSLFRQMQCCGVSPDAHAVSCVLKCVS-SLGSLTEGEVIHGLLEKLG 234

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
             +   + +AL+ +Y++CG+++DA RVFD M  ++  +W SMI G   NG    A++LF 
Sbjct: 235 LGQACAVANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFS 294

Query: 340 MMQECCVQPNYVTFLGALSACGHA--GLVDK-------------GREIFESMERDYSMKP 384
            M     + + VT L  L AC     GL+ K             G +  +S   D ++  
Sbjct: 295 KMWSQGTEISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGS 354

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
           K      +V +  + G +  A +    M  K N  VW
Sbjct: 355 K------LVFMYVKCGDMASARRVFDAMSSKGNVHVW 385



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 4/145 (2%)

Query: 286 LGSALVDMYAKCGKIDDARRVFDHM--QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
           LG  LV  Y KCG + +AR VFD M  Q  +V  WTS++  Y K G+  +A+ LF  MQ 
Sbjct: 138 LGKRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQC 197

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE 403
           C V P+       L      G + +G E+   +     +         ++ +  R G +E
Sbjct: 198 CGVSPDAHAVSCVLKCVSSLGSLTEG-EVIHGLLEKLGLGQACAVANALIAVYSRCGRME 256

Query: 404 QALKFVLEMPEKPNSDVWAALLSSC 428
            A +    M  + ++  W +++  C
Sbjct: 257 DAARVFDSMHPR-DAISWNSMIGGC 280


>gi|225450911|ref|XP_002280644.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14330
           [Vitis vinifera]
 gi|296088358|emb|CBI36803.3| unnamed protein product [Vitis vinifera]
          Length = 652

 Score =  273 bits (697), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 164/428 (38%), Positives = 237/428 (55%), Gaps = 18/428 (4%)

Query: 79  NTNISIKLLILHLKCGALKYAGQMFDE------LPQRTLSAYNYMIAGYLKNGQVEESLS 132
           N  +  KL+ L   C  +  A ++F++      LP+   S +  M  GY +NG  +E+L 
Sbjct: 108 NPTLKGKLITLFSVCRRVDEARRVFEDGGEDVDLPE---SVWVAMGIGYSRNGYPKEALL 164

Query: 133 LVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTAL 192
           L  ++V    +   + FSM LKA   C     L    GR VHAQ+LK     D V+  AL
Sbjct: 165 LYYEMVCQFGQLGNFAFSMALKA---CSDLGDL--QTGRAVHAQVLKATEDPDQVVNNAL 219

Query: 193 VDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI---V 249
           +  Y + G    A  VFD M  +NV+   S+I+G + +  V +A E FR    K +    
Sbjct: 220 LRLYSEDGCFDEALRVFDGMPHRNVVSWNSLIAGLVKKDGVFEAIEAFRIMQGKGMGFSW 279

Query: 250 VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309
           V    I      +       E+H  ++K+    D  + ++LVDMYAKCG +D  RRVF+ 
Sbjct: 280 VTLTTILPVCARVTALGSGKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNG 339

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKG 369
           MQ K++ +W ++I GY  NG   +A+E F  M      P+ +TF+  LS C HAGL D G
Sbjct: 340 MQGKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDG 399

Query: 370 REIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCR 429
             +FE M+ DY + P +EHYAC+VD+LGRAG +++AL+ V  MP KP   +W +LL+SCR
Sbjct: 400 CRLFEMMKMDYGISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCR 459

Query: 430 LHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTG 489
           LH +V +A   A  +F+L  N+  G YV LSN  A AG W+SV  +RE M+ RG+ K+ G
Sbjct: 460 LHGNVPLAEAVAKRLFELEPNN-AGNYVMLSNIYANAGMWESVKVVREFMEKRGMTKEAG 518

Query: 490 CSWVGTES 497
           CSW+  +S
Sbjct: 519 CSWLQIKS 526



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 131/277 (47%), Gaps = 20/277 (7%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +HA + K    P+  ++  LL L+ + G    A ++FD +P R + ++N +IAG +K
Sbjct: 197 GRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFDEALRVFDGMPHRNVVSWNSLIAGLVK 256

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
              V E++   R +   G      T + IL    C R         G+ +HA I+K   K
Sbjct: 257 KDGVFEAIEAFRIMQGKGMGFSWVTLTTIL--PVCARVTA---LGSGKEIHAVIVKSTAK 311

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +  +LVD Y K G   Y R VF+ M  K++    ++I+G+   G + +A E F++ 
Sbjct: 312 PDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEM 371

Query: 244 V----EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE-----DVKLGSALVDMY 294
           +      D + + A++ G S +        +  C+L + +  +      V+  + LVD+ 
Sbjct: 372 ICSGFSPDGITFIALLSGCSHA-----GLADDGCRLFEMMKMDYGISPTVEHYACLVDVL 426

Query: 295 AKCGKIDDARRVFDHMQQKNVFT-WTSMIDGYGKNGN 330
            + G+I +A  +  +M  K   + W S+++    +GN
Sbjct: 427 GRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGN 463



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 92/183 (50%), Gaps = 5/183 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IHA I K+  KP+  +   L+ ++ KCGA+ Y  ++F+ +  + L+++N +I GY  
Sbjct: 298 GKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAI 357

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG++ E++   ++++ SG  PDG TF  +L  S C  S+  L  +  R+     +   + 
Sbjct: 358 NGRMTEAMESFQEMICSGFSPDGITFIALL--SGC--SHAGLADDGCRLFEMMKMDYGIS 413

Query: 184 ADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
                Y  LVD   + G+   A  IV +M  +       S+++     G V  AE + ++
Sbjct: 414 PTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKR 473

Query: 243 TVE 245
             E
Sbjct: 474 LFE 476


>gi|297822703|ref|XP_002879234.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297325073|gb|EFH55493.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 152/463 (32%), Positives = 248/463 (53%), Gaps = 41/463 (8%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H    K+ V  +  ++  L+  +  CG L  A ++F  + ++ + ++N MI G+++
Sbjct: 152 GQSLHGMAIKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQ 211

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G  +++L L +K+ S   +    T   +L A    R         GR V + I +  V 
Sbjct: 212 KGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRD-----LEFGRRVCSYIEENRVN 266

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +  L  A++D Y K G    A+ +FD M EK+ +  T+M+ G+      E A E+    
Sbjct: 267 VNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNAM 326

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVH-CQLIKNVFFEDVKL---------------- 286
            +KDIV +NA+I  Y  + +     L  H  QL KN+    + L                
Sbjct: 327 PKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKNIKLNQITLVSTLSACAQVGALELG 386

Query: 287 ------------------GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
                              SAL+ MY+KCG ++ AR VF+ +++++VF W++MI G   +
Sbjct: 387 RWIHSYIKKNGIKMNFYVTSALIHMYSKCGDLEKAREVFNSVEKRDVFVWSAMIGGLAMH 446

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G  ++A+++F  MQE  V+PN VTF     AC H GLVD+   +F  ME  Y + P+ +H
Sbjct: 447 GCGSEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFYKMESSYGIVPEDKH 506

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
           YAC+VD+LGR+G LE+A+KF+  MP  P++ VW ALL +C++H ++ +A +A   + +L 
Sbjct: 507 YACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLSLAEMACTRLLELE 566

Query: 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
             +  GA+V LSN  A +GKWD+V+ELR+ M++ G+ K+ GCS
Sbjct: 567 PRN-DGAHVLLSNIYAKSGKWDNVSELRKHMRVTGLKKEPGCS 608



 Score =  160 bits (405), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 139/501 (27%), Positives = 236/501 (47%), Gaps = 64/501 (12%)

Query: 30  PPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLK----IHAHITKTGVKPNTNISIK 85
           P  L  + + SNP   T+     +H I+       L+     HAH+ +TG+  +   + K
Sbjct: 9   PLSLPRHPNFSNPNQPTTNNERSRHTISLIDRCSSLRQLKQTHAHMIRTGMFSDPYSASK 68

Query: 86  LLILHL--KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGER 143
           L  +       +L+YA ++FDE+PQ     +N +I  Y        S+     +VSS  +
Sbjct: 69  LFAIAALSSFASLEYARKVFDEIPQPNSFTWNTLIRAYASGPDPVCSIWAFLDMVSSESQ 128

Query: 144 --PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK 201
             P+ YTF  ++KA+    S      +LG+ +H   +K  V +D  +  +L+  Y   G 
Sbjct: 129 CYPNKYTFPFLIKAAAEVSS-----LSLGQSLHGMAIKSAVGSDVFVANSLIHCYFSCGD 183

Query: 202 TSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS 261
              A  VF  + EK+V+   SMI+GF+ +G  + A E+F+K   +D+   +  + G  +S
Sbjct: 184 LDSACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGV-LS 242

Query: 262 IETARKALEVH---CQLI-KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT 317
                + LE     C  I +N    ++ L +A++DMY KCG I+DA+R+FD M++K+  T
Sbjct: 243 ACAKIRDLEFGRRVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVT 302

Query: 318 WTSMIDGYG-------------------------------KNGNPNQALELFCMMQ-ECC 345
           WT+M+DGY                                +NG PN+AL +F  +Q +  
Sbjct: 303 WTTMLDGYAISEDYEAAREVLNAMPKKDIVAWNALISAYEQNGKPNEALLVFHELQLQKN 362

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY--ACMVDLLGRAGSLE 403
           ++ N +T +  LSAC   G ++ GR I   ++++     KM  Y  + ++ +  + G LE
Sbjct: 363 IKLNQITLVSTLSACAQVGALELGRWIHSYIKKN---GIKMNFYVTSALIHMYSKCGDLE 419

Query: 404 QALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN-ANDRPGAYVALSNT 462
           +A + V    EK +  VW+A++    +H      + A +  +K+  AN +P   V  +N 
Sbjct: 420 KA-REVFNSVEKRDVFVWSAMIGGLAMHG---CGSEAVDMFYKMQEANVKPNG-VTFTNV 474

Query: 463 LAA---AGKWDSVTELREKMK 480
             A    G  D    L  KM+
Sbjct: 475 FCACSHTGLVDEAESLFYKME 495


>gi|359476090|ref|XP_003631788.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g20540-like [Vitis vinifera]
          Length = 515

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 160/467 (34%), Positives = 257/467 (55%), Gaps = 49/467 (10%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           KIHAH+ K  +  ++ +  K++ +    G  +YA  +F  +       YN MI  Y  N 
Sbjct: 6   KIHAHVVKFSLSXSSFLVTKMVDMCNHHGETEYANLLFKRVADPNAFLYNAMIRAYKHNK 65

Query: 126 QVEESLSLVRKLV--SSGERP---DGYTFSMILK--ASTCCRSNVPLPRNLGRMVHAQIL 178
               ++++ ++++  S GE P   D +TF  ++K  A   C        NLG+ VH    
Sbjct: 66  VYILAITVHKQMLGHSHGENPXFPDKFTFPFVVKXCAGLMCY-------NLGKQVHGHAF 118

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
           K   K++ V+  +LV+ YVK      A  VF+ M E++ +   ++ISG +  G +  A  
Sbjct: 119 KFGPKSNTVIENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVRLGQMRRARA 178

Query: 239 IFRKTVEKDIVVYNAMIEGYS------ISIETARK------------------------A 268
           IF +  +K I  + A++ GY+      +++E  R+                        A
Sbjct: 179 IFEELQDKTIFSWTAIVSGYARIGCHAVALEFFRRMQMVDIELDEISLVSVLPACAQLGA 238

Query: 269 LE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
           LE    +H    K  F  D+ + +AL+++YAK G +D+ RR+F  M +++V +W++MI G
Sbjct: 239 LELGKWIHIYADKAGFLRDICVCNALIEVYAKRGSMDEGRRLFHKMNERDVISWSTMIVG 298

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP 384
              +G   +A+ELF  MQ+  V+PN +TF+G LSAC HAGL+++G   FESMERD +++P
Sbjct: 299 LANHGRAREAIELFQEMQKAKVEPNIITFVGLLSACAHAGLLNEGLGYFESMERDDNIEP 358

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
            +EHY C+V+LLG +G L+QAL+ + +MP KP+SD+W  L SSCR H ++E+  IA   +
Sbjct: 359 GVEHYGCLVNLLGLSGRLDQALELIKKMPMKPDSDIWGLLSSSCRSHGNLEIVAIAMEHL 418

Query: 445 FKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
            +L  +D  G Y+ LSN  A  GKWD V+ +R+ M  + + K  GCS
Sbjct: 419 LELEPDD-TGNYITLSNLYADLGKWDGVSRMRKLMSSKYMNKTPGCS 464



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/287 (20%), Positives = 136/287 (47%), Gaps = 19/287 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H H  K G K NT I   L+ +++KC +L  A ++F+E+ +R   ++N +I+G+++
Sbjct: 110 GKQVHGHAFKFGPKSNTVIENSLVEMYVKCDSLDDAHRVFEEMTERDAVSWNTLISGHVR 169

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            GQ+  + ++  +L       D   FS     S   R        +      ++   D++
Sbjct: 170 LGQMRRARAIFEEL------QDKTIFSWTAIVSGYARIGC---HAVALEFFRRMQMVDIE 220

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVF----DMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
            D++   +++ +  + G     + +          +++    ++I  +  +G +++   +
Sbjct: 221 LDEISLVSVLPACAQLGALELGKWIHIYADKAGFLRDICVCNALIEVYAKRGSMDEGRRL 280

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           F K  E+D++ ++ MI G + +   AR+A+E+  ++ K     ++     L+   A  G 
Sbjct: 281 FHKMNERDVISWSTMIVGLA-NHGRAREAIELFQEMQKAKVEPNIITFVGLLSACAHAGL 339

Query: 300 IDDARRVFDHMQQKN-----VFTWTSMIDGYGKNGNPNQALELFCMM 341
           +++    F+ M++ +     V  +  +++  G +G  +QALEL   M
Sbjct: 340 LNEGLGYFESMERDDNIEPGVEHYGCLVNLLGLSGRLDQALELIKKM 386


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 146/441 (33%), Positives = 248/441 (56%), Gaps = 41/441 (9%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           L+  +++ G +  A ++FD++P R   ++  MIAGY +NG+ EE+L L+++L  SG  P 
Sbjct: 359 LITGYMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPS 418

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
             + + I  A   C + V L    G  VH+  +K   + +     AL+  Y K     YA
Sbjct: 419 LSSLTSIFFA---CSNIVAL--ETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYA 473

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI----- 260
           R VF  M+ K+++   S ++  +    +++A   F   + +D V +  +I  Y+      
Sbjct: 474 RQVFSRMVTKDIVSWNSFLAALVQNDLLDEARNTFDNMLSRDDVSWTTIISAYAHAEQSN 533

Query: 261 -----------------------------SIETARKALEVHCQLIKNVFFEDVKLGSALV 291
                                        S+  ++   ++H   IK     ++ + +AL+
Sbjct: 534 EAMGAFKTMFCEHELPNSPILTILLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALI 593

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
            MY KCG   D+RR+FD M+++++FTW ++I GY ++G   +A++++  M+   V PN V
Sbjct: 594 SMYFKCG-CADSRRIFDLMEERDIFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEV 652

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
           TF+G L+AC HAGLVD+G + F+SM +DY + P  EHYACMVDLLGR G ++ A +F+ +
Sbjct: 653 TFVGLLNACSHAGLVDEGWKFFKSMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYD 712

Query: 412 MPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471
           MP +P++ +W+ALL +C++H + E+   AA ++F++  ++  G YV LSN  ++ G W  
Sbjct: 713 MPIEPDTVIWSALLGACKIHKNAEIGKRAAEKLFRIEPSN-AGNYVMLSNIYSSLGMWGE 771

Query: 472 VTELREKMKLRGVLKDTGCSW 492
           V E+R+ MK +GV+K+ GCSW
Sbjct: 772 VAEVRKIMKQQGVIKEPGCSW 792



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/374 (22%), Positives = 171/374 (45%), Gaps = 66/374 (17%)

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           + G +  A ++FD +P+R + A+N MI+ Y  NG  + +  L   +     R    T ++
Sbjct: 46  RLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDAISGGNMR----TGAI 101

Query: 152 ILKASTCCRSNVPLPRNLGRMVHA-QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFD 210
           +L               LGR++ A ++    ++ + V + A++  YV+ G  + AR +FD
Sbjct: 102 LLSGYG----------RLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARRLFD 151

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE 270
            M  ++V    SM++G+     + DA  +F K  E+++V +  MI GY   IE   KA +
Sbjct: 152 AMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYG-RIENHGKAWD 210

Query: 271 VHCQL-----------------------------------IKNVFFEDVKLGSALVDMYA 295
           + C++                                   +K  F  DV +G+A++++Y+
Sbjct: 211 IFCKMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYS 270

Query: 296 K-CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM--MQECCVQPNYVT 352
           +    +D A + F+ M ++N +TW++MI      G  + A+ ++    ++    +   +T
Sbjct: 271 RDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTALIT 330

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
               L+ CG    +D  R +FE +      +P +  +  ++    + G + +A +   +M
Sbjct: 331 ---GLAQCGR---IDDARILFEQIP-----EPIVVSWNALITGYMQNGMVNEAKELFDKM 379

Query: 413 PEKPNSDVWAALLS 426
           P + N+  WA +++
Sbjct: 380 PFR-NTISWAGMIA 392



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 87/335 (25%), Positives = 158/335 (47%), Gaps = 26/335 (7%)

Query: 153 LKASTCCRSNVPLPRNLGRMVHA-QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           L+ S C      L R LGR+  A ++     + D + + +++ +Y   G    AR ++D 
Sbjct: 32  LEVSGCSARIRDLGR-LGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDA 90

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY--SISIETARKAL 269
           +   N+     ++SG+   G V +A  +F   +E++ V +NAMI  Y  +  I  AR+  
Sbjct: 91  ISGGNMRTGAILLSGYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNGDITMARR-- 148

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
                L   +   DV   ++++  Y    ++ DAR +F+ M ++N+ +WT MI GYG+  
Sbjct: 149 -----LFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIE 203

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH- 388
           N  +A ++FC M    + P+   F  ALSA    G +D    + ES+ R  ++K   E  
Sbjct: 204 NHGKAWDIFCKMHREGLLPDQSNFASALSAVKGLGNLD----VLESL-RVLALKTGFERD 258

Query: 389 ---YACMVDLLGRAGS-LEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
                 ++++  R  S L+ A+KF   M E+ N   W+ ++++      ++    AA  +
Sbjct: 259 VVIGTAILNVYSRDTSVLDTAIKFFESMIER-NEYTWSTMIAALSHGGRID----AAIAV 313

Query: 445 FKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           ++ +         AL   LA  G+ D    L E++
Sbjct: 314 YERDPVKSIACRTALITGLAQCGRIDDARILFEQI 348



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 159/345 (46%), Gaps = 22/345 (6%)

Query: 78  PNTNISIKLLILHLKCGALKY--AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVR 135
           P+ ++S    +L   C +L+   A  +F+++P+R L ++  MI+GY +     ++  +  
Sbjct: 154 PSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFC 213

Query: 136 KLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDS 195
           K+   G  PD   F+  L A      N+ +  +L  +     LK   + D V+ TA+++ 
Sbjct: 214 KMHREGLLPDQSNFASALSAVKGL-GNLDVLESLRVLA----LKTGFERDVVIGTAILNV 268

Query: 196 YVKGGKTSYARI-VFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAM 254
           Y +        I  F+ M+E+N    ++MI+     G ++ A  ++ +   K I    A+
Sbjct: 269 YSRDTSVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACRTAL 328

Query: 255 IEGYSI--SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ 312
           I G +    I+ AR   E   Q+ + +    V   +AL+  Y + G +++A+ +FD M  
Sbjct: 329 ITGLAQCGRIDDARILFE---QIPEPI----VVSWNALITGYMQNGMVNEAKELFDKMPF 381

Query: 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           +N  +W  MI GY +NG   +AL L   +    + P+  +      AC +   ++ G ++
Sbjct: 382 RNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQV 441

Query: 373 FESMERDYSMKPKMEHYAC--MVDLLGRAGSLEQALKFVLEMPEK 415
                +   +  +   +AC  ++ + G+  ++E A +    M  K
Sbjct: 442 HSLAVK---VGCQFNSFACNALITMYGKCRNMEYARQVFSRMVTK 483



 Score = 48.1 bits (113), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 25/94 (26%), Positives = 51/94 (54%), Gaps = 1/94 (1%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH    K G+     ++  L+ ++ KCG    + ++FD + +R +  +N +I GY +
Sbjct: 570 GQQIHTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIFDLMEERDIFTWNTIITGYAQ 628

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           +G   E++ + + + S+G  P+  TF  +L A +
Sbjct: 629 HGLGREAIKMYQHMESAGVLPNEVTFVGLLNACS 662


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 154/434 (35%), Positives = 243/434 (55%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH  + KTG + N  +S  L+ ++ K G L +A ++F  L ++ + ++  MIAGY +
Sbjct: 492 GEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQ 551

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           + +  E+L+L +++   G   D   F+  + A    ++      N G+ +HAQ       
Sbjct: 552 HEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQA-----LNQGQQIHAQACVSGYS 606

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +  ALV  Y + GK   A   FD +  K+ I   S+ISGF   G  E+A  +F + 
Sbjct: 607 DDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQM 666

Query: 244 VEKDIVVYNAMIEG----YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            +    + N+   G     + ++   +   ++H  +IK     + ++ + L+ +YAKCG 
Sbjct: 667 SKAGQEI-NSFTFGPAVSAAANVANVKLGKQIHAMIIKTGHDSETEVSNVLITLYAKCGN 725

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           IDDA R F  M +KN  +W +M+ GY ++G+  +AL LF  M++  V PN+VTF+G LSA
Sbjct: 726 IDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTFVGVLSA 785

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H GLVD+G + F+SM   + + PK EHYAC+VDLLGR+G L +A +FV EMP +P++ 
Sbjct: 786 CSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMPIQPDAM 845

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           V   LLS+C +H ++++   AA+ + +L   D    YV LSN  A  GKW      R+ M
Sbjct: 846 VCRTLLSACIVHKNIDIGEFAASHLLELEPKD-SATYVLLSNMYAVTGKWGCRDRTRQMM 904

Query: 480 KLRGVLKDTGCSWV 493
           K RGV K+ G SW+
Sbjct: 905 KDRGVKKEPGRSWI 918



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 187/372 (50%), Gaps = 12/372 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G + H++  K G+  +  +   LL L++KC  +K A + F       +  +N M+  Y  
Sbjct: 391 GKQFHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGL 450

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
              + ES  +  ++   G  P+ +T+  IL+  +  R+      +LG  +H Q+LK   +
Sbjct: 451 LDNLNESFKIFTQMQMEGIEPNQFTYPSILRTCSSLRA-----VDLGEQIHTQVLKTGFQ 505

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR-- 241
            +  + + L+D Y K GK  +A  +F  + EK+V+  T+MI+G+       +A  +F+  
Sbjct: 506 FNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEM 565

Query: 242 --KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
             + +  D + + + I   +  I+   +  ++H Q   + + +D+ +G+ALV +YA+CGK
Sbjct: 566 QDQGIHSDNIGFASAISACA-GIQALNQGQQIHAQACVSGYSDDLSVGNALVSLYARCGK 624

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           + DA   FD +  K+  +W S+I G+ ++G+  +AL LF  M +   + N  TF  A+SA
Sbjct: 625 VRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSA 684

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
             +   V  G++I  +M        + E    ++ L  + G+++ A +   EMPEK N  
Sbjct: 685 AANVANVKLGKQI-HAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEK-NEI 742

Query: 420 VWAALLSSCRLH 431
            W A+L+    H
Sbjct: 743 SWNAMLTGYSQH 754



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 109/381 (28%), Positives = 184/381 (48%), Gaps = 17/381 (4%)

Query: 59  DTPFYGL-KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYM 117
           D PF+ + KIHA     G + +  +   L+ L+ K G L  A ++FD L +R   ++  M
Sbjct: 183 DVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAM 242

Query: 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQI 177
           ++G  ++G  EE++ L  ++ +SG  P  Y FS +L A T     V   + +G  +H  +
Sbjct: 243 LSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACT----KVEFYK-VGEQLHGLV 297

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
           LK     +  +  ALV  Y + G    A  VF+ ML+++ +   S+ISG   QG+ + A 
Sbjct: 298 LKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKAL 357

Query: 238 EIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDM 293
           E+F+K     ++ D V   +++   S S+       + H   IK     D+ L  AL+D+
Sbjct: 358 ELFKKMCLDCLKPDCVTVASLLSACS-SVGALLVGKQFHSYAIKAGMSSDIILEGALLDL 416

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           Y KC  I  A   F   + +NV  W  M+  YG   N N++ ++F  MQ   ++PN  T+
Sbjct: 417 YVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTY 476

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
              L  C     VD G +I   + +    +  +   + ++D+  + G L+ ALK    + 
Sbjct: 477 PSILRTCSSLRAVDLGEQIHTQVLKT-GFQFNVYVSSVLIDMYAKLGKLDHALKIFRRLK 535

Query: 414 EKPNSDV--WAALLSSCRLHD 432
           EK   DV  W A+++    H+
Sbjct: 536 EK---DVVSWTAMIAGYAQHE 553



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 189/388 (48%), Gaps = 18/388 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G K+H  I K G      +  +L+ L++  G L  A  +FDE+P R LS +N ++  ++ 
Sbjct: 87  GWKLHGKILKMGFCAEVVLCERLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVA 146

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
                  L L R+++    +PD  T++ +L+   C   +VP   +    +HA+ +    +
Sbjct: 147 GKMAGRVLGLFRRMLQEKVKPDERTYAGVLRG--CGGGDVPF--HCVEKIHARTITHGYE 202

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               +   L+D Y K G  + A+ VFD + +++ +   +M+SG    G  E+A  +F + 
Sbjct: 203 NSLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQM 262

Query: 244 VEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               +     ++++++   +  +E  +   ++H  ++K  F  +  + +ALV +Y++ G 
Sbjct: 263 HTSGVYPTPYIFSSVLSACT-KVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGN 321

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
              A +VF+ M Q++  ++ S+I G  + G  ++ALELF  M   C++P+ VT    LSA
Sbjct: 322 FIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSA 381

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C   G +  G++ F S      M   +     ++DL  +   ++ A +F L   E  N  
Sbjct: 382 CSSVGALLVGKQ-FHSYAIKAGMSSDIILEGALLDLYVKCSDIKTAHEFFLS-TETENVV 439

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKL 447
           +W  +L +  L D++       NE FK+
Sbjct: 440 LWNVMLVAYGLLDNL-------NESFKI 460


>gi|356515406|ref|XP_003526391.1| PREDICTED: pentatricopeptide repeat-containing protein At3g24000,
           mitochondrial-like [Glycine max]
          Length = 647

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 153/440 (34%), Positives = 253/440 (57%), Gaps = 12/440 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H H+  +  K +  I   LL ++ +CG+L+ A ++FDE+P R + ++  MI GY +
Sbjct: 93  GKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEGARRLFDEMPHRDMVSWTSMITGYAQ 152

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N +  ++L L  +++S G  P+ +T S ++K   CC        N GR +HA   K    
Sbjct: 153 NDRASDALLLFPRMLSDGAEPNEFTLSSLVK---CC--GYMASYNCGRQIHACCWKYGCH 207

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
           ++  + ++LVD Y + G    A +VFD +  KN +   ++I+G+  +G  E+A  +F   
Sbjct: 208 SNVFVGSSLVDMYARCGYLGEAMLVFDKLGCKNEVSWNALIAGYARKGEGEEALALFVRM 267

Query: 241 -RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            R+        Y+A++   S S+    +   +H  L+K+       +G+ L+ MYAK G 
Sbjct: 268 QREGYRPTEFTYSALLSSCS-SMGCLEQGKWLHAHLMKSSQKLVGYVGNTLLHMYAKSGS 326

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I DA +VFD + + +V +  SM+ GY ++G   +A + F  M    ++PN +TFL  L+A
Sbjct: 327 IRDAEKVFDKLVKVDVVSCNSMLIGYAQHGLGKEAAQQFDEMIRFGIEPNDITFLSVLTA 386

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C HA L+D+G+  F  M R Y+++PK+ HYA +VDLLGRAG L+QA  F+ EMP +P   
Sbjct: 387 CSHARLLDEGKHYFGLM-RKYNIEPKVSHYATIVDLLGRAGLLDQAKSFIEEMPIEPTVA 445

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +W ALL + ++H + EM   AA  +F+L+ +  PG +  L+N  A+AG+W+ V ++R+ M
Sbjct: 446 IWGALLGASKMHKNTEMGAYAAQRVFELDPS-YPGTHTLLANIYASAGRWEDVAKVRKIM 504

Query: 480 KLRGVLKDTGCSWVGTESGL 499
           K  GV K+  CSWV  E+ +
Sbjct: 505 KDSGVKKEPACSWVEVENSV 524



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 118/251 (47%), Gaps = 8/251 (3%)

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
           ++E D  +YN +++     +   ++   VH  ++ + F  D+ + ++L+ MYA+CG ++ 
Sbjct: 69  SLEPDRTLYNTLLK-RCTQLGKLKEGKLVHFHVLNSNFKHDLVIQNSLLFMYARCGSLEG 127

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           ARR+FD M  +++ +WTSMI GY +N   + AL LF  M     +PN  T    +  CG+
Sbjct: 128 ARRLFDEMPHRDMVSWTSMITGYAQNDRASDALLLFPRMLSDGAEPNEFTLSSLVKCCGY 187

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
               + GR+I     + Y     +   + +VD+  R G L +A+  V +     N   W 
Sbjct: 188 MASYNCGRQIHACCWK-YGCHSNVFVGSSLVDMYARCGYLGEAM-LVFDKLGCKNEVSWN 245

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA-----AGKWDSVTELRE 477
           AL++      + E A      + +         Y AL ++ ++      GKW     ++ 
Sbjct: 246 ALIAGYARKGEGEEALALFVRMQREGYRPTEFTYSALLSSCSSMGCLEQGKWLHAHLMKS 305

Query: 478 KMKLRGVLKDT 488
             KL G + +T
Sbjct: 306 SQKLVGYVGNT 316


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 253/465 (54%), Gaps = 42/465 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH H+ K G      +   L+ ++ K G +  A ++FDELP++ +  YN +I G ++
Sbjct: 162 GRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMR 221

Query: 124 NGQVEES-------------------------------LSLVRKLVSSGERPDGYTFSMI 152
            G+VE+S                               + + R++     + D YTF  +
Sbjct: 222 CGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSV 281

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L   T C   + L    G+ VHA I++ D K +  + +ALVD Y K      A  VF  M
Sbjct: 282 L---TACGGVMALQE--GKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKM 336

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKA 268
             KNV+  T+M+ G+   G+ E+A + F    +  +E D     ++I   + ++ +  + 
Sbjct: 337 TCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCA-NLASLEEG 395

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
            + H + + +     + + +ALV +Y KCG I+D+ R+F+ +  K+  TWT+++ GY + 
Sbjct: 396 AQFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQF 455

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G  N+ + LF  M    ++P+ VTF+G LSAC  AGLV+KG +IFESM  ++ + P  +H
Sbjct: 456 GKANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDH 515

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
           Y CM+DL  RAG +E+A  F+ +MP  P++  WA LLSSCR + ++++   AA  + +L+
Sbjct: 516 YTCMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAEFLMELD 575

Query: 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            ++   +YV LS+  AA GKW+ V  LR+ M+ +G+ K+ GCSW+
Sbjct: 576 PHN-TASYVLLSSVYAAKGKWEEVARLRKDMRDKGLRKEPGCSWI 619



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 116/426 (27%), Positives = 202/426 (47%), Gaps = 72/426 (16%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +H+HI KT   P T +   L+  + K G++ YA ++FD++P   L ++N +++ Y K G+
Sbjct: 31  LHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPNLYSWNTILSAYSKLGR 90

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCC--------RSNVPLPRN---------- 168
           V E    +  L  +  R DG +++ ++     C          N+ L  +          
Sbjct: 91  VSE----MEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLKNDGSFNLNRITF 146

Query: 169 --------------LGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE 214
                         LGR +H  ++K    +   + + LVD Y K G  S AR VFD + E
Sbjct: 147 STLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMISCARKVFDELPE 206

Query: 215 KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI-------------- 260
           KNV+   ++I G M  G VED++ +F +  E+D + + +MI G++               
Sbjct: 207 KNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNGLDRDAIDIFREM 266

Query: 261 -------------SIETA-------RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
                        S+ TA       ++  +VH  +I+  + +++ + SALVDMY KC  I
Sbjct: 267 KLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNI 326

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
             A  VF  M  KNV +WT+M+ GYG+NG   +A++ F  MQ+  ++P+  T    +S+C
Sbjct: 327 KSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSC 386

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            +   +++G + F +      +   +     +V L G+ GS+E + +   E+  K +   
Sbjct: 387 ANLASLEEGAQ-FHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFK-DEVT 444

Query: 421 WAALLS 426
           W AL+S
Sbjct: 445 WTALVS 450



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 84/337 (24%), Positives = 146/337 (43%), Gaps = 76/337 (22%)

Query: 158 CCRS-NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216
           CC + N    +NL    H+ I+K     +  L   L+ SY K G   YA  VFD M   N
Sbjct: 19  CCETHNFTKAKNL----HSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMPHPN 74

Query: 217 VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS----------------- 259
           +    +++S +   G V + E +F     +D V +N++I GY+                 
Sbjct: 75  LYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNLMLK 134

Query: 260 ---------ISIET----------ARKALEVHCQLIKNVFFEDVKLGSALVDMYAK---- 296
                    I+  T           +   ++H  ++K  F   V +GS LVDMY+K    
Sbjct: 135 NDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSKMGMI 194

Query: 297 ---------------------------CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
                                      CG+++D++R+F  M++++  +WTSMI G+ +NG
Sbjct: 195 SCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGFTQNG 254

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER-DYSMKPKMEH 388
               A+++F  M+   +Q +  TF   L+ACG    + +G+++   + R DY  K  +  
Sbjct: 255 LDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDY--KDNIFV 312

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
            + +VD+  +  +++ A     +M  K N   W A+L
Sbjct: 313 ASALVDMYCKCKNIKSAEAVFKKMTCK-NVVSWTAML 348


>gi|357493705|ref|XP_003617141.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355518476|gb|AET00100.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 684

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 162/483 (33%), Positives = 262/483 (54%), Gaps = 20/483 (4%)

Query: 26  NQTFPPKLQNYDSLSNPLTAT---SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNI 82
           N+ F P L ++ ++          + P   +       P  G +IH    K G+  +  +
Sbjct: 86  NRRFLPALLHFTNMRRDNVQPNDFTFPCVFKASAFVQIPMTGKQIHGLALKGGMIYDVFV 145

Query: 83  SIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE 142
                 ++ K G    A  MFDE+PQR L+ +N  I+  +++ +  +++   ++ +    
Sbjct: 146 GCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISNAVQDRRSLDAIVAFKEFLCVHG 205

Query: 143 RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKT 202
            P+  TF   L A   C   V L  NLGR +HA I++C  K D  +   L+D Y K G  
Sbjct: 206 EPNSITFCAFLNA---CVDMVRL--NLGRQLHAFIVRCGYKEDVSVANGLIDFYGKCGDI 260

Query: 203 SYARIVFDMML-EKNVICSTSMISGFMSQGFVEDAEEIF---RKTVE-KDIVVYNAMIEG 257
             A +VF+ +   KNV+   SM++  +     E A  +F   RK VE  D ++ + +   
Sbjct: 261 VSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFLQARKEVEPTDFMISSVLSAC 320

Query: 258 YSIS-IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF 316
             +  +E  R    VH   +K    +++ +GSALVDMY KCG I++A +VF  + ++N+ 
Sbjct: 321 AELGGLELGRS---VHALAVKACVEDNIFVGSALVDMYGKCGSIENAEQVFSELPERNLV 377

Query: 317 TWTSMIDGYGKNGNPNQALELFCMMQ--ECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374
           TW +MI GY   G+ + AL LF  M      ++P+YVT +  LS C   G V++G +IFE
Sbjct: 378 TWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRPSYVTLISILSVCSRVGAVERGIQIFE 437

Query: 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDV 434
           SM  +Y ++P  EH+AC+VDLLGR+G +++A +F+  M  +P   VW ALL +CR+H   
Sbjct: 438 SMRLNYGIEPGAEHFACVVDLLGRSGLVDRAYEFIQNMAIQPTISVWGALLGACRMHGKT 497

Query: 435 EMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVG 494
           E+  IAA ++F+L+  D  G +V LSN LA+AG+W+  T +R++MK  G+ K+ G SW+ 
Sbjct: 498 ELGKIAAEKLFELDHVD-SGNHVVLSNMLASAGRWEEATVVRKEMKDIGIKKNVGYSWIA 556

Query: 495 TES 497
            ++
Sbjct: 557 VKN 559



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 113/445 (25%), Positives = 208/445 (46%), Gaps = 23/445 (5%)

Query: 48  LPSALQHYINSDTPFYGLKIHAHITKTGVKP-NTNISIKLLILHLKCGALKYAGQMFDEL 106
           L S L+  +++     G  IHAHI +T V P  + +S  L+ ++ K   L  A  +    
Sbjct: 9   LGSLLESAVSTHCSILGRTIHAHIIRTHVTPLPSFLSNHLVNMYSKLDLLNSAQHVLSLT 68

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
             RT+  +  +I+G + N +   +L     +     +P+ +TF  + KAS    + V +P
Sbjct: 69  HLRTVVTWTSLISGCVHNRRFLPALLHFTNMRRDNVQPNDFTFPCVFKAS----AFVQIP 124

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
              G+ +H   LK  +  D  +  +  D Y K G    A  +FD M ++N+    + IS 
Sbjct: 125 MT-GKQIHGLALKGGMIYDVFVGCSCFDMYCKTGFRGDACNMFDEMPQRNLATWNAYISN 183

Query: 227 FMSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSISIETARKAL--EVHCQLIKNVF 280
            +      DA   F++ +    E + + + A +      ++  R  L  ++H  +++  +
Sbjct: 184 AVQDRRSLDAIVAFKEFLCVHGEPNSITFCAFLNA---CVDMVRLNLGRQLHAFIVRCGY 240

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHM-QQKNVFTWTSMIDGYGKNGNPNQALELFC 339
            EDV + + L+D Y KCG I  A  VF+ +  +KNV +W SM+    +N    +A  +F 
Sbjct: 241 KEDVSVANGLIDFYGKCGDIVSAEMVFNRIGNRKNVVSWCSMLAALVQNHEEERACMVFL 300

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
             ++  V+P        LSAC   G ++ GR +  ++     ++  +   + +VD+ G+ 
Sbjct: 301 QARK-EVEPTDFMISSVLSACAELGGLELGRSV-HALAVKACVEDNIFVGSALVDMYGKC 358

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVAL 459
           GS+E A +   E+PE+ N   W A++       D++MA     E+   +   RP +YV L
Sbjct: 359 GSIENAEQVFSELPER-NLVTWNAMIGGYAHQGDIDMALRLFEEMTLGSHGIRP-SYVTL 416

Query: 460 SNTLAAAGKWDSV---TELREKMKL 481
            + L+   +  +V    ++ E M+L
Sbjct: 417 ISILSVCSRVGAVERGIQIFESMRL 441


>gi|297828249|ref|XP_002882007.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297327846|gb|EFH58266.1| hypothetical protein ARALYDRAFT_483672 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 606

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 152/472 (32%), Positives = 245/472 (51%), Gaps = 60/472 (12%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH  + KTG+  +  +   L+ L+LKCG L +A QMFD +PQR   +YN MI GY+K
Sbjct: 133 GMQIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGFARQMFDRMPQRDSVSYNSMINGYVK 192

Query: 124 NGQVEESLSL-------VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
            G +E +  L       ++ L+S      GY             +      N+   + A+
Sbjct: 193 CGLIESARELFDLMPREMKNLISWNSMISGY-------------AQTSEGVNIASKLFAE 239

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
           + + D+    + + +++D YVK G+   A+ +FD+M  ++V+   +MI G+   GFV  A
Sbjct: 240 MPEKDL----ISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQA 295

Query: 237 EEIFRKTVEKDIVVYNAMIEGY---------------------------------SISIE 263
           + +F +   +D+V YN+M+ GY                                 S   +
Sbjct: 296 KTLFDQMPLRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVIILSAIAQ 355

Query: 264 TAR--KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
             R  KA ++H  +++  F+   KLG AL+DMY+KCG I  A  VF+ ++ K++  W +M
Sbjct: 356 LGRLSKATDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNAM 415

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           I G   +G    A  +   ++   + P+ +TF+G L+AC H+GLV +G   FE M R + 
Sbjct: 416 IGGLAVHGLGESAFNMLLQIERLSIIPDDITFVGVLNACSHSGLVKEGLLCFELMRRKHK 475

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441
           ++P+++HY CMVD+L R+GS+E A   + EMP +PN  +W   L++C  H + E   + A
Sbjct: 476 IEPRLQHYGCMVDILSRSGSIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVA 535

Query: 442 NEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             +  L A   P +YV LSN  A+ G W  V  +R  MK R + K  GCSW+
Sbjct: 536 KHLI-LQAGYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWI 586



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 120/497 (24%), Positives = 224/497 (45%), Gaps = 68/497 (13%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLIL-----------HLKCGA 95
           S+ S +Q   +  T +   KIH  + KTG+  N+N++ ++++              +C  
Sbjct: 4   SISSTIQVLGSCKTSYDVNKIHGGLIKTGIIKNSNLTTRIVLAFAASRRPYLAEFARCVF 63

Query: 96  LKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
            +Y    F          +N +I  +       ++L L   ++ +G   D ++ S++LKA
Sbjct: 64  HEYHVCSFSPGEMEDPFLWNAVIKSHSHGKDPRQALLLFCLMLENGVSVDKFSLSLVLKA 123

Query: 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
             C R         G  +H  + K  + +D  L   L+  Y+K G   +AR +FD M ++
Sbjct: 124 --CSRLGFV---KGGMQIHGFLRKTGLWSDLFLQNCLIGLYLKCGCLGFARQMFDRMPQR 178

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVE--KDIVVYNAMIEGYSISIETARKALEVHC 273
           + +   SMI+G++  G +E A E+F       K+++ +N+MI GY+ + E    A ++  
Sbjct: 179 DSVSYNSMINGYVKCGLIESARELFDLMPREMKNLISWNSMISGYAQTSEGVNIASKLFA 238

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
           ++ +    +D+   ++++D Y K G+I+DA+ +FD M +++V T  +MIDGY K G  +Q
Sbjct: 239 EMPE----KDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTCATMIDGYAKLGFVHQ 294

Query: 334 ALELF----------------------CMMQ----------ECCVQPNYVTFLGALSACG 361
           A  LF                      C M+          E  + P+  T +  LSA  
Sbjct: 295 AKTLFDQMPLRDVVAYNSMMAGYVQNKCHMEALEIFNDMEKESHLSPDETTLVIILSAIA 354

Query: 362 HAGLVDKGREI-FESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
             G + K  ++    +E+ + +  K+     ++D+  + GS++ A+  V E  E  + D 
Sbjct: 355 QLGRLSKATDMHLYIVEKQFYLGGKLG--VALIDMYSKCGSIQHAM-LVFEGIENKSIDH 411

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE------ 474
           W A++    +H   E A     +I +L+       +V + N  + +G    V E      
Sbjct: 412 WNAMIGGLAVHGLGESAFNMLLQIERLSIIPDDITFVGVLNACSHSGL---VKEGLLCFE 468

Query: 475 -LREKMKLRGVLKDTGC 490
            +R K K+   L+  GC
Sbjct: 469 LMRRKHKIEPRLQHYGC 485


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 150/435 (34%), Positives = 249/435 (57%), Gaps = 12/435 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH  + ++G   +  +S  L+ ++ KCG L+ A ++F+++ ++ + ++N MIAGY  
Sbjct: 226 GKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSL 285

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G  +  + L R++   G RP   T S IL A  C RS   +   LG+ +H  I++  V+
Sbjct: 286 KGDSKSCIELFRRMDEEGIRPTLTTLSSILMA--CSRS---VNLQLGKFIHGYIIRNRVE 340

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
           AD  + ++L+D Y K G    A  VF  M + NV+    MISG++  G   +A  IF   
Sbjct: 341 ADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDM 400

Query: 241 -RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            +  V+ D + + +++   S  +    K  E+H  +I++    +  +  AL+DMYAKCG 
Sbjct: 401 RKAGVKPDAITFTSVLPACS-QLAVLEKGKEIHNFIIESKLEINEVVMGALLDMYAKCGA 459

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +D+A  +F+ + +++  +WTSMI  YG +G   +AL+LF  MQ+   +P+ VTFL  LSA
Sbjct: 460 VDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSA 519

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNS 418
           C HAGLVD+G   F  M  +Y  KP +EHY+C++DLLGR G L +A + +   P+ + + 
Sbjct: 520 CSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQRTPDIREDV 579

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            + + L S+C LH  +++       + + + +D P  Y+ LSN  A+  KWD V ++R K
Sbjct: 580 GLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDD-PSTYIILSNMYASVKKWDEVRKVRLK 638

Query: 479 MKLRGVLKDTGCSWV 493
           +K  G+ K+ GCSW+
Sbjct: 639 IKELGLKKNPGCSWI 653



 Score =  187 bits (474), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 228/434 (52%), Gaps = 20/434 (4%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           A + PS L+         YG  +H H+ K+G   +  +    + ++ KC   + A ++FD
Sbjct: 106 AFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFD 165

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP 164
           E+P+R ++++N +I+ Y ++GQ E++L L  ++  SG +PD  T + ++  S+C R    
Sbjct: 166 EMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVI--SSCAR---L 220

Query: 165 LPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
           L    G+ +H ++++     D  + +ALVD Y K G    A+ VF+ +  KNV+   SMI
Sbjct: 221 LDLERGKEIHMELVRSGFALDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMI 280

Query: 225 SGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVF 280
           +G+  +G  +   E+FR+  E+ I       ++++   S S+        +H  +I+N  
Sbjct: 281 AGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKF-IHGYIIRNRV 339

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             D+ + S+L+D+Y KCG I  A  VF +M + NV +W  MI GY K G+  +AL +F  
Sbjct: 340 EADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTD 399

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME----HYACMVDLL 396
           M++  V+P+ +TF   L AC    +++KG+EI      ++ ++ K+E        ++D+ 
Sbjct: 400 MRKAGVKPDAITFTSVLPACSQLAVLEKGKEI-----HNFIIESKLEINEVVMGALLDMY 454

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456
            + G++++AL    ++PE+     W +++++   H     A     ++ + +A      +
Sbjct: 455 AKCGAVDEALHIFNQLPERDFVS-WTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDKVTF 513

Query: 457 VALSNTLAAAGKWD 470
           +A+ +  + AG  D
Sbjct: 514 LAILSACSHAGLVD 527



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 80/285 (28%), Positives = 141/285 (49%), Gaps = 43/285 (15%)

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
           +L T +   Y+K GK  + +IV  + L+ N+    S+I+ + S    + A+ +F+ T+E 
Sbjct: 9   LLKTCIDSKYLKQGKLIHQKIV-SLGLQNNITLCKSLINLYFSCHLFQSAKLVFQ-TIEN 66

Query: 247 --DIVVYNAM----------IEGYSI------------------SIETARKALE------ 270
             DI ++N +          IEG  +                  S+  A   L       
Sbjct: 67  PLDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGK 126

Query: 271 -VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
            VH  +IK+ F  DV + S+ V MYAKC   +DA ++FD M +++V +W ++I  Y ++G
Sbjct: 127 MVHTHVIKSGFAMDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDG 186

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD-YSMKPKMEH 388
            P +ALELF  M+    +P+ VT    +S+C     +++G+EI   + R  +++   +  
Sbjct: 187 QPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGFVS- 245

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDD 433
            + +VD+ G+ G LE A K V E  ++ N   W ++++   L  D
Sbjct: 246 -SALVDMYGKCGCLEMA-KEVFEQIQRKNVVSWNSMIAGYSLKGD 288



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 133/268 (49%), Gaps = 9/268 (3%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           T T+L S L     S     G  IH +I +  V+ +  ++  L+ L+ KCG +  A  +F
Sbjct: 307 TLTTLSSILMACSRSVNLQLGKFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVF 366

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
             +P+  + ++N MI+GY+K G   E+L +   +  +G +PD  TF+ +L A   C    
Sbjct: 367 QNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPA---CSQLA 423

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
            L +  G+ +H  I++  ++ ++V+  AL+D Y K G    A  +F+ + E++ +  TSM
Sbjct: 424 VLEK--GKEIHNFIIESKLEINEVVMGALLDMYAKCGAVDEALHIFNQLPERDFVSWTSM 481

Query: 224 ISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNV 279
           I+ + S G   +A ++F K  + D     V + A++   S +          +  + +  
Sbjct: 482 IAAYGSHGQAFEALKLFEKMQQSDAKPDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYG 541

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVF 307
           F   V+  S L+D+  + G++ +A  + 
Sbjct: 542 FKPAVEHYSCLIDLLGRVGRLREAYEIL 569


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  272 bits (695), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 143/446 (32%), Positives = 251/446 (56%), Gaps = 11/446 (2%)

Query: 52  LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL 111
           L+  +N      G +IH+H  ++G+  N +++  +  +++KCG L+ A  +F+++ ++  
Sbjct: 118 LRSLLNPSGLEIGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNA 177

Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR 171
            A+  ++ GY +  +  ++L+L  K+V+ G   D Y FS++LKA   C     L  N GR
Sbjct: 178 VAWTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKA---CAGLEEL--NFGR 232

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
            +H  I+K  ++++  + T LVD YVK      A   F+ + E N +  +++I+G+   G
Sbjct: 233 QIHGHIVKLGLESEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMG 292

Query: 232 FVEDAEEIFR----KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG 287
             E+A + F     ++V+ +   Y ++ +  S ++       + H   IK+         
Sbjct: 293 EFEEALKTFESLRTRSVDINSFTYTSIFQACS-ALADFNSGAQAHADAIKSSLVAYQHGE 351

Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347
           SA++ MY++CG++D A RVF+ +   +   WT++I GY   GN  +AL+LF  MQ+C V+
Sbjct: 352 SAMITMYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVR 411

Query: 348 PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALK 407
           PN VTF+  L+AC H+GLV +GR+  ESM  +Y +   ++HY CMVD+  RAG L++AL+
Sbjct: 412 PNAVTFIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALE 471

Query: 408 FVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG 467
            +  MP  P++  W  LL  C  + ++E+  +AA  +F+L+  D  G Y+ + N  A+ G
Sbjct: 472 LIRSMPFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPEDTAG-YILMFNLYASFG 530

Query: 468 KWDSVTELREKMKLRGVLKDTGCSWV 493
           KW     +R+ M  R + K+  CSW+
Sbjct: 531 KWKEAANVRKMMAERNLRKELSCSWI 556



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 180/369 (48%), Gaps = 12/369 (3%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           F G   H  + +T   P   +   +L ++ KCG+L  A ++FDE+ +R L ++N +I+ Y
Sbjct: 27  FDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGSLADARKVFDEMRERNLVSWNTIISAY 86

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            +NG  ++   +   ++    +P+G T+   L++        P    +G+ +H+  ++  
Sbjct: 87  AENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLL-----NPSGLEIGKQIHSHAIRSG 141

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           + ++  + TA+ + YVK G    A +VF+ M EKN +  T ++ G+       DA  +F 
Sbjct: 142 LGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYTQAERQMDALALFA 201

Query: 242 KT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           K     VE D  V++ +++  +  +E      ++H  ++K     +V +G+ LVD Y KC
Sbjct: 202 KMVNEGVELDEYVFSIVLKACA-GLEELNFGRQIHGHIVKLGLESEVSVGTPLVDFYVKC 260

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
             ++ A + F+ + + N  +W+++I GY + G   +AL+ F  ++   V  N  T+    
Sbjct: 261 SNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTRSVDINSFTYTSIF 320

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            AC      + G +      +  S+       + M+ +  R G L+ A + V E  + P+
Sbjct: 321 QACSALADFNSGAQAHADAIKS-SLVAYQHGESAMITMYSRCGRLDYATR-VFESIDDPD 378

Query: 418 SDVWAALLS 426
           +  W A+++
Sbjct: 379 AVAWTAIIA 387


>gi|225439325|ref|XP_002267596.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Vitis vinifera]
          Length = 623

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 160/467 (34%), Positives = 249/467 (53%), Gaps = 48/467 (10%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGA----LKYAGQMFDELPQRTLSAYNYMIAGYL 122
           IHA++ +T +  +   + +L+   +   +    + YA ++F ++    L  +N MI G+ 
Sbjct: 36  IHAYMIRTHIICDVFAASRLIAFCVDPSSGTSLIDYASRIFSQIQNPNLFIFNAMIRGHS 95

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST--CCRSNVPLPRNLGRMVHAQILKC 180
            +   +++     +    G  PD  TF  ++K+ T   C S       +G   H  I+K 
Sbjct: 96  GSKNPDQAFHFYVQSQRQGLLPDNLTFPFLVKSCTKLHCIS-------MGSQAHGHIIKH 148

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
             + D  +  +LV  Y   G T  A ++F  M   +V+  TSMI GF   G VE A ++F
Sbjct: 149 GFEKDVYVQNSLVHMYATFGDTEAATLIFQRMYYVDVVSWTSMIRGFNKCGDVESARKLF 208

Query: 241 RKTVEKDIVVYNAMIEGYS------------------------------ISIETARKALE 270
            +  EK++V ++ MI GY+                              IS      ALE
Sbjct: 209 DQMPEKNLVTWSTMISGYAQNNHFDKAVELFKVLQSQGVRANETVMVSVISSCAHLGALE 268

Query: 271 V----HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
           +    H  ++KN    ++ LG+ALVDMYA+CG ID A  VF+ + +++  +WT++I G  
Sbjct: 269 LGERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLA 328

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM 386
            +G   ++L+ F  M E  + P  +TF   LSAC H GLV++G +IFESM+RD+ ++P++
Sbjct: 329 MHGYSERSLKYFATMVEAGLTPRDITFTAVLSACSHGGLVERGFQIFESMKRDHRVEPRL 388

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446
           EHY CMVDLLGRAG LE+A +FVL+MP KPN+ VW ALL +CR+H + E+       + +
Sbjct: 389 EHYGCMVDLLGRAGKLEEAERFVLKMPVKPNAPVWGALLGACRIHKNAEIGERVGKILIQ 448

Query: 447 LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           L      G YV LSN  A A +W+ VTE+R+ MK +G+ K  G S +
Sbjct: 449 L-LPQHSGYYVLLSNIYANAKEWEKVTEMRQMMKAKGLKKPPGHSLI 494



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 9/156 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G + H ++ K G+  N  +   L+ ++ +CG++  A  +F++LP+R   ++  +IAG   
Sbjct: 270 GERAHDYVVKNGMTLNLILGTALVDMYARCGSIDKAVWVFEDLPERDTLSWTALIAGLAM 329

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G  E SL     +V +G  P   TF+ +L A   C     + R        + +K D +
Sbjct: 330 HGYSERSLKYFATMVEAGLTPRDITFTAVLSA---CSHGGLVERGFQIF---ESMKRDHR 383

Query: 184 ADDVL--YTALVDSYVKGGKTSYA-RIVFDMMLEKN 216
            +  L  Y  +VD   + GK   A R V  M ++ N
Sbjct: 384 VEPRLEHYGCMVDLLGRAGKLEEAERFVLKMPVKPN 419


>gi|147800371|emb|CAN70930.1| hypothetical protein VITISV_000387 [Vitis vinifera]
          Length = 773

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 162/428 (37%), Positives = 240/428 (56%), Gaps = 18/428 (4%)

Query: 79  NTNISIKLLILHLKCGALKYAGQMFDE------LPQRTLSAYNYMIAGYLKNGQVEESLS 132
           N  +  KL+ L   CG +  A ++F++      LP+   S +  M  GY +NG  +E+L 
Sbjct: 107 NPTLKGKLITLFSVCGRVDEARRVFEDGGEDVDLPE---SVWVAMGIGYSRNGYPKEALL 163

Query: 133 LVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTAL 192
           L  ++V    +   + FSM LKA     S++   R  GR VHAQ+LK     D V+  AL
Sbjct: 164 LYYEMVCQFGQLGNFAFSMALKAC----SDLGDLRT-GRAVHAQVLKATEDPDQVVNNAL 218

Query: 193 VDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI---V 249
           +  Y + G    A  +FD M  +N++   S+I+G + +  V +A E FR    K +    
Sbjct: 219 LRLYSEDGCFEEALRMFDGMPHRNLVSWNSLIAGLVKKEGVFEAIEAFRIMQGKGMGFSW 278

Query: 250 VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309
           V    I      +       E+H  ++K+    D  + ++LVDMYAKCG +D  RRVF+ 
Sbjct: 279 VTLTTILPVCARVTALGSGKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNG 338

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKG 369
           MQ K++ +W ++I GY  NG   +A+E F  M      P+ +TF+  LS C HAGL D G
Sbjct: 339 MQGKDLTSWNTLITGYAINGRMTEAMESFQEMICSGFSPDGITFIALLSGCSHAGLADDG 398

Query: 370 REIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCR 429
             +FE M+ D+ + P +EHYAC+VD+LGRAG +++AL+ V  MP KP   +W +LL+SCR
Sbjct: 399 CRLFEMMKMDHGISPTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCR 458

Query: 430 LHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTG 489
           LH +V +A   A  +F+L  N+  G YV LSN  A AG W+SV  +RE M+ RG+ K+ G
Sbjct: 459 LHGNVPLAEAVAKRLFELEPNN-AGNYVMLSNIYANAGMWESVKVVREFMEKRGMTKEAG 517

Query: 490 CSWVGTES 497
           CSW+  +S
Sbjct: 518 CSWLQIKS 525



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/277 (26%), Positives = 132/277 (47%), Gaps = 20/277 (7%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +HA + K    P+  ++  LL L+ + G  + A +MFD +P R L ++N +IAG +K
Sbjct: 196 GRAVHAQVLKATEDPDQVVNNALLRLYSEDGCFEEALRMFDGMPHRNLVSWNSLIAGLVK 255

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
              V E++   R +   G      T + IL    C R         G+ +HA I+K   K
Sbjct: 256 KEGVFEAIEAFRIMQGKGMGFSWVTLTTILP--VCARVTA---LGSGKEIHAVIVKSTAK 310

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +  +LVD Y K G   Y R VF+ M  K++    ++I+G+   G + +A E F++ 
Sbjct: 311 PDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAINGRMTEAMESFQEM 370

Query: 244 V----EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE-----DVKLGSALVDMY 294
           +      D + + A++ G S +        +  C+L + +  +      V+  + LVD+ 
Sbjct: 371 ICSGFSPDGITFIALLSGCSHA-----GLADDGCRLFEMMKMDHGISPTVEHYACLVDVL 425

Query: 295 AKCGKIDDARRVFDHMQQKNVFT-WTSMIDGYGKNGN 330
            + G+I +A  +  +M  K   + W S+++    +GN
Sbjct: 426 GRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGN 462



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 92/183 (50%), Gaps = 5/183 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IHA I K+  KP+  +   L+ ++ KCGA+ Y  ++F+ +  + L+++N +I GY  
Sbjct: 297 GKEIHAVIVKSTAKPDAPVLNSLVDMYAKCGAMDYCRRVFNGMQGKDLTSWNTLITGYAI 356

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG++ E++   ++++ SG  PDG TF  +L  S C  S+  L  +  R+     +   + 
Sbjct: 357 NGRMTEAMESFQEMICSGFSPDGITFIALL--SGC--SHAGLADDGCRLFEMMKMDHGIS 412

Query: 184 ADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
                Y  LVD   + G+   A  IV +M  +       S+++     G V  AE + ++
Sbjct: 413 PTVEHYACLVDVLGRAGRIKEALEIVKNMPFKPTGSIWGSLLNSCRLHGNVPLAEAVAKR 472

Query: 243 TVE 245
             E
Sbjct: 473 LFE 475


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 156/457 (34%), Positives = 251/457 (54%), Gaps = 14/457 (3%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           NP   TS+   L+  +   +   G  IH    KT      ++   LL ++ KCG +K A 
Sbjct: 262 NPFALTSV---LKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDAR 318

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
             F+ +P   +   ++MI+ Y ++ Q E++  L  +L+ S   P+ Y+ S +L+A   C 
Sbjct: 319 LAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQA---CT 375

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           + V L  + G+ +H   +K   ++D  +  AL+D Y K      +  +F  + + N +  
Sbjct: 376 NMVQL--DFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSW 433

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLI 276
            +++ GF   G  E+A  +F +     +    V Y++++   + S  + R A ++HC + 
Sbjct: 434 NTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACA-STASIRHAGQIHCSIE 492

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           K+ F  D  +G++L+D YAKCG I DA +VF H+ ++++ +W ++I GY  +G    ALE
Sbjct: 493 KSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALE 552

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           LF  M +  V+ N +TF+  LS C   GLV+ G  +F+SM  D+ +KP MEHY C+V LL
Sbjct: 553 LFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLL 612

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456
           GRAG L  AL+F+ ++P  P++ VW ALLSSC +H +V +   +A +I ++   D    Y
Sbjct: 613 GRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDET-TY 671

Query: 457 VALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           V LSN  AAAG  D V  LR+ M+  GV K  G SWV
Sbjct: 672 VLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWV 708



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 148/315 (46%), Gaps = 12/315 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHL--KCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           G  +H H+ + G     ++    ++L++  K G L  A ++FD +P+R + ++  ++  +
Sbjct: 78  GRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAH 137

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            + G  E + +L R+L   G   + +  + +LK +    +       L   VH+   K  
Sbjct: 138 AQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDA-----AGLAGGVHSCAWKLG 192

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
              +  + + L+D+Y      S A  VF+ ++ K+ +  T+M+S +      E+A  +F 
Sbjct: 193 HDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFS 252

Query: 242 KT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           K      + +     ++++  ++ + +      +H   IK +   +  +G AL+DMYAKC
Sbjct: 253 KMRVSGCKPNPFALTSVLKA-AVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKC 311

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G I DAR  F+ +   +V   + MI  Y ++    QA ELF  +    V PN  +    L
Sbjct: 312 GDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVL 371

Query: 358 SACGHAGLVDKGREI 372
            AC +   +D G++I
Sbjct: 372 QACTNMVQLDFGKQI 386


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 155/461 (33%), Positives = 252/461 (54%), Gaps = 47/461 (10%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG----------------------- 100
           G +IH H+ K G++ +  +   L+ ++ + G L YA                        
Sbjct: 151 GKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTL 210

Query: 101 --------QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
                   ++F+E+P R   ++N MIAGY ++G+ EE+L+  +++  +   P+  T   +
Sbjct: 211 RGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTV 270

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L A  C +S       LG  V + I    + ++  L  AL+D Y K G    AR +F+ +
Sbjct: 271 LSA--CAQSG---SLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGI 325

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRK----TVEKDIVVYNAMIEG--YSISIETAR 266
            EK++I    MI G+      ++A  +FRK     VE + V + +++    Y  +++  +
Sbjct: 326 CEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLGK 385

Query: 267 KALEVHCQLIKNVF-FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
               +H  + K      +  L ++L+DMYAKCG I+ A++VF  M+ K++ +W +MI G 
Sbjct: 386 W---IHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGL 442

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
             +G+ N ALELF  M++   +P+ +TF+G LSAC HAGLV+ GR+ F SM  DY + PK
Sbjct: 443 AMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPK 502

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIF 445
           ++HY CM+DLLGRAG  ++A   +  M  KP+  +W +LL +CR+H +VE+   AA  +F
Sbjct: 503 LQHYGCMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLF 562

Query: 446 KLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLK 486
           +L   + PGAYV LSN  A AG+WD V  +R K+  +G+ K
Sbjct: 563 ELEP-ENPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKK 602



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 124/452 (27%), Positives = 215/452 (47%), Gaps = 47/452 (10%)

Query: 25  PNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLK-IHAHITKTGVKPNTNIS 83
           P+   PP   ++   S+P             +++   F  LK IH+ I KTG+  NT  +
Sbjct: 8   PSLVMPPPTLHFQPTSDPPYKLLQNHPSLTLLSTCKSFQNLKQIHSQIIKTGLH-NTQFA 66

Query: 84  IKLLILHLKC---GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSS 140
           +  LI        G L YA  +F+ + Q     +N MI G   +     ++    +++  
Sbjct: 67  LSKLIEFCAISPFGNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLC 126

Query: 141 GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGG 200
           G  P+ YTF  +LK  +C +         G+ +H  +LK  +++D  ++T+L++ Y + G
Sbjct: 127 GVEPNSYTFPFLLK--SCAKVGA---TQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNG 181

Query: 201 KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI 260
           +  YA +VF     ++ +  T++I+G+  +G ++DA  +F +   +D V +NAMI GY+ 
Sbjct: 182 ELGYAELVFSKSSLRDAVSFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQ 241

Query: 261 S----------IETARKALEVHCQLIKNV------------------FFEDVKLGS---- 288
           S           E  R  +  +   +  V                  + ED  LGS    
Sbjct: 242 SGRFEEALAFFQEMKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRL 301

Query: 289 --ALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
             AL+DMY+KCG +D AR +F+ + +K++ +W  MI GY    +  +AL LF  MQ+  V
Sbjct: 302 VNALIDMYSKCGDLDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNV 361

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
           +PN VTF+  L AC + G +D G+ I   +++ +        +  ++D+  + G++E A 
Sbjct: 362 EPNDVTFVSILPACAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAK 421

Query: 407 KFVLEMPEKPNS-DVWAALLSSCRLHDDVEMA 437
           +    M  KP S   W A++S   +H    MA
Sbjct: 422 QVFAGM--KPKSLGSWNAMISGLAMHGHANMA 451



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 82/171 (47%), Gaps = 10/171 (5%)

Query: 32  KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVK-PNTNISIKLLILH 90
           K+Q  +   N +T  S+  A  +    D    G  IHA+I K  +   NT++   L+ ++
Sbjct: 355 KMQQSNVEPNDVTFVSILPACAYLGALDL---GKWIHAYIDKKFLGLTNTSLWTSLIDMY 411

Query: 91  LKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFS 150
            KCG ++ A Q+F  +  ++L ++N MI+G   +G    +L L R++   G  PD  TF 
Sbjct: 412 AKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFV 471

Query: 151 MILKASTCCRSNVPLPRNLGRMVHAQILK-CDVKADDVLYTALVDSYVKGG 200
            +L A  C  + +     LGR   + +++  D+      Y  ++D   + G
Sbjct: 472 GVLSA--CSHAGLV---ELGRQCFSSMVEDYDISPKLQHYGCMIDLLGRAG 517


>gi|413952892|gb|AFW85541.1| hypothetical protein ZEAMMB73_780855 [Zea mays]
          Length = 787

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 158/455 (34%), Positives = 250/455 (54%), Gaps = 14/455 (3%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           +T+L S+L+    +     G  +H +  K G+  + ++   L+ L+ KCG +  A  +FD
Sbjct: 212 STTLASSLRAAAEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFD 271

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP 164
            +    L AYN +I+GY  NG VE S+ L ++L +SG RP+  T   ++   +      P
Sbjct: 272 RMDNPDLVAYNALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYS------P 325

Query: 165 LPRNL-GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
               L  R +HA ++K  + AD ++ TAL   Y +      AR +FD MLEK +    +M
Sbjct: 326 FGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEKTMESWNAM 385

Query: 224 ISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNV 279
           ISG+   G  E A  +F+   E + V  N +    ++S      AL     VH  + K  
Sbjct: 386 ISGYAQNGLTEMAVALFQLMQELN-VQPNPITISSTLSACAHLGALSLGKWVHRIISKEK 444

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
              +V + +AL+DMYAKCG I +AR +FD M  KNV +W +MI GYG +G   +AL+L+ 
Sbjct: 445 LELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGQGAEALKLYK 504

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
            M +  + P   TFL  + AC H GLVD+G+++F  M  +Y + P +EH  CMVDLLGRA
Sbjct: 505 DMLDARILPTSSTFLSVIYACSHGGLVDEGQKVFRVMTNEYRITPGIEHCTCMVDLLGRA 564

Query: 400 GSLEQALKFVLEMPEKP-NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVA 458
           G L +AL+ + E P+      VW ALL +C +H + ++A +A+ ++F+L++ +  G YV 
Sbjct: 565 GKLNEALELISEFPQSAIGPGVWGALLGACMVHKNSDLAKLASQKLFELDSEN-AGYYVL 623

Query: 459 LSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           LSN   +   +     +R++ K R ++K  GC+ +
Sbjct: 624 LSNLYTSKKHYSEAAVVRQEAKTRKLVKTPGCTLI 658



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 176/373 (47%), Gaps = 23/373 (6%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +H      G   +T ++  L  L+ K      A ++FD +P      +N ++AG   +  
Sbjct: 136 LHGLSVAAGYAADTFVASALAKLYFKLSRGDDARKVFDTVPSPDTILWNTLLAGLPGS-- 193

Query: 127 VEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             E+L    ++V +G  RPD  T +  L+A+            +GR VH   +KC +   
Sbjct: 194 --EALEAFVRMVDAGRVRPDSTTLASSLRAAAEASHMA-----MGRCVHGYGVKCGLAEH 246

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV- 244
           + + T L+  Y K G    A+ +FD M   +++   ++ISG+   G VE + E+F++   
Sbjct: 247 EHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYNALISGYSVNGMVESSVELFKELTA 306

Query: 245 ---EKDIVVYNAMIEGYS-ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
                +     A+I  YS    E   + L  H  ++K     D  + +AL  +Y +   +
Sbjct: 307 SGWRPNSSTLVAVIPVYSPFGHELLARCL--HAFVVKARLDADALVSTALTTLYCRLNDM 364

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           + AR +FD M +K + +W +MI GY +NG    A+ LF +MQE  VQPN +T    LSAC
Sbjct: 365 ESARSIFDAMLEKTMESWNAMISGYAQNGLTEMAVALFQLMQELNVQPNPITISSTLSAC 424

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHY--ACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
            H G +  G+ +   + ++   K ++  Y    ++D+  + GS+ +A      M  K N 
Sbjct: 425 AHLGALSLGKWVHRIISKE---KLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNK-NV 480

Query: 419 DVWAALLSSCRLH 431
             W A++S   LH
Sbjct: 481 VSWNAMISGYGLH 493



 Score = 76.6 bits (187), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 84/357 (23%), Positives = 151/357 (42%), Gaps = 35/357 (9%)

Query: 144 PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTS 203
           PD ++F+    + +   S+        R +H   +     AD  + +AL   Y K  +  
Sbjct: 107 PDSFSFAFAATSLSSSCSSRGNDAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSRGD 166

Query: 204 YARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI--S 261
            AR VFD +   + I   ++++G        +A E F + V+   V  ++     S+  +
Sbjct: 167 DARKVFDTVPSPDTILWNTLLAGLPGS----EALEAFVRMVDAGRVRPDSTTLASSLRAA 222

Query: 262 IETARKALE--VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWT 319
            E +  A+   VH   +K    E   + + L+ +Y+KCG +D A+ +FD M   ++  + 
Sbjct: 223 AEASHMAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDSAQFLFDRMDNPDLVAYN 282

Query: 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL---SACGHAGLVDKGREIFESM 376
           ++I GY  NG    ++ELF  +     +PN  T +  +   S  GH        E+    
Sbjct: 283 ALISGYSVNGMVESSVELFKELTASGWRPNSSTLVAVIPVYSPFGH--------ELLARC 334

Query: 377 ERDYSMKPKMEHYA----CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHD 432
              + +K +++  A     +  L  R   +E A      M EK   + W A++S    + 
Sbjct: 335 LHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMLEK-TMESWNAMISGYAQNG 393

Query: 433 DVEMANIAANEIFKLNANDRPGAYVALSNTLAAA--------GKWDSVTELREKMKL 481
             EMA      + +LN    P   + +S+TL+A         GKW      +EK++L
Sbjct: 394 LTEMAVALFQLMQELNVQPNP---ITISSTLSACAHLGALSLGKWVHRIISKEKLEL 447


>gi|297811443|ref|XP_002873605.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319442|gb|EFH49864.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 750

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 156/498 (31%), Positives = 262/498 (52%), Gaps = 16/498 (3%)

Query: 1   MPNLSRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDT 60
           M +L+ +  +   S +     L      F   L++ D   + +  T L S     +N   
Sbjct: 142 MSDLNAVSRTTMISAYAEQGLLDKAVGLFSRMLESGDKPPSSMYTTLLKS----LVNPRA 197

Query: 61  PFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120
              G +IHAH+ + G+  N +I   ++ +++KCG L  A ++FD++  +   A+  ++ G
Sbjct: 198 LDIGRQIHAHVIRAGLCSNASIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVAWTGLMVG 257

Query: 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
           Y + G+  ++L L   L++ G   D + FS++LKA   C S   L    G+ +HA + K 
Sbjct: 258 YTQAGRARDALKLFVDLITEGVEWDSFVFSVVLKA---CASLEEL--RFGKQIHACVAKL 312

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
            ++ +  + T LVD Y+K      A   F  + E N +  +++ISG+      E+A + F
Sbjct: 313 GLECEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTF 372

Query: 241 RKTVEKDIVV-----YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
           +    K+ VV     Y ++ +  S+ +       +VH   IK          SAL+ MY+
Sbjct: 373 KSLRSKNAVVLNSFTYTSIFQACSV-LADCNIGGQVHADAIKRSLIGSQYGESALITMYS 431

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KCG +DDA  VF+ M   ++  WT+ I G+   GN ++AL LF  M  C ++PN VTF+ 
Sbjct: 432 KCGCLDDAHEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIA 491

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            L+AC HAGLV++G+   ++M R Y++ P ++HY CM+D+  R+G L++AL+F+  MP +
Sbjct: 492 VLTACSHAGLVEQGKHYLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALRFMKNMPFE 551

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
           P++  W   LS C  H ++E+  IA  E+ +L+  D  G YV   N    AGKW+   E+
Sbjct: 552 PDAMSWKCFLSGCWTHKNLELGKIAGEELRQLDPEDTAG-YVLPFNLYTWAGKWEEAAEV 610

Query: 476 REKMKLRGVLKDTGCSWV 493
            + M  R + K+  CSW+
Sbjct: 611 MKLMNERMLKKELSCSWI 628



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 9/149 (6%)

Query: 230 QGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV-HCQLIKN-----VFFED 283
            G + +A E F+   E D    +  +  Y    E  R+   + H +L+ N     +    
Sbjct: 59  HGKLNEAFEFFQ---EMDKAGVSVSLYSYQCLFEACRELRSLSHGRLLHNRMRMGIENPS 115

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
           V L + ++ MY +CG ++DA ++FD M   N  + T+MI  Y + G  ++A+ LF  M E
Sbjct: 116 VLLQNCVLQMYCECGSLEDADKLFDEMSDLNAVSRTTMISAYAEQGLLDKAVGLFSRMLE 175

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREI 372
              +P    +   L +  +   +D GR+I
Sbjct: 176 SGDKPPSSMYTTLLKSLVNPRALDIGRQI 204


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 150/457 (32%), Positives = 256/457 (56%), Gaps = 11/457 (2%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           + PS L+   +    + G +IH H+ KTG + N  +   L+ ++ K G L  A ++   L
Sbjct: 465 TYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRL 524

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P+  + ++  MIAGY+++    E+L L  ++   G + D   F+  + A    R+     
Sbjct: 525 PEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRA----- 579

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
              G+ +HAQ       AD  +  AL+  Y + G+   A + F+ + +KN I   S++SG
Sbjct: 580 LRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSG 639

Query: 227 FMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
               G+ E+A ++F    R   E ++  Y + I   + S+   ++  ++H  ++K  +  
Sbjct: 640 LAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAIS-AAASLANIKQGQQIHSMVLKTGYDS 698

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           + ++ ++L+ +YAK G I DA R F+ M ++NV +W +MI GY ++G   +AL LF  M+
Sbjct: 699 EREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMK 758

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
            C + PN+VTF+G LSAC H GLV +G + FESM + + + PK EHY C+VDLLGRAG L
Sbjct: 759 VCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQL 818

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
           ++A++++ EMP   ++ +W  LLS+C +H ++E+   AA+ + +L   D    YV +SN 
Sbjct: 819 DRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPED-SATYVLISNI 877

Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
            A + +W      R+ MK RGV K+ G SW+  ++ +
Sbjct: 878 YAVSRQWIHRDWSRKLMKDRGVKKEPGRSWIEVKNAV 914



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 206/434 (47%), Gaps = 22/434 (5%)

Query: 3   NLSRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYI------ 56
           N+ R+     +++H+   T +   Q    ++Q    L N +    + S  Q+Y+      
Sbjct: 13  NVVRVSGVGATNSHSFDQTTLHMEQGKSKRIQ----LMNFMEERGVRSNYQNYLWLLEGC 68

Query: 57  -NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYN 115
             S + F  +++H  I+K+G      +   L+  + + G    A ++FDE   R++ ++N
Sbjct: 69  LTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWN 128

Query: 116 YMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA 175
            MI  ++      +   L R++++ G  P+GYTF+ +LKA  C   ++    N  + VH+
Sbjct: 129 KMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKA--CVGGDIAF--NYVKQVHS 184

Query: 176 QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
           +       +  ++   L+D Y K G    A+ VF+ +  K+++   +MISG    G  E+
Sbjct: 185 RTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEE 244

Query: 236 AEEIFRKTVEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALV 291
           A  +F      +I     V ++++   S  I+      ++HC +IK  F  +  + + LV
Sbjct: 245 AILLFCDMHASEIFPTPYVLSSVLSA-STKIQLFELGEQLHCLVIKWGFHSETYVCNGLV 303

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
            +Y++  K+  A R+F  M  ++  ++ S+I G  + G  ++ALELF  MQ  C++P+ +
Sbjct: 304 ALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCI 363

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
           T    LSAC   G + KG ++  S      M   +     ++DL  +   +E A KF L 
Sbjct: 364 TVASLLSACASVGALHKGMQL-HSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFL- 421

Query: 412 MPEKPNSDVWAALL 425
             E  N  +W  +L
Sbjct: 422 TTETENIVLWNVML 435



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 187/395 (47%), Gaps = 21/395 (5%)

Query: 47  SLPSALQHYINSDTPF-YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
           +    L+  +  D  F Y  ++H+     G   +  ++  L+ L+ K G ++ A ++F+ 
Sbjct: 161 TFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNC 220

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           +  + +  +  MI+G  +NG  EE++ L   + +S   P  Y  S +L AST     + L
Sbjct: 221 ICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSAST----KIQL 276

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
              LG  +H  ++K    ++  +   LV  Y +  K   A  +F  M  ++ +   S+IS
Sbjct: 277 FE-LGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLIS 335

Query: 226 GFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFF 281
           G + QGF + A E+F    R  ++ D +   +++   + S+    K +++H   IK    
Sbjct: 336 GLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACA-SVGALHKGMQLHSHAIKAGMS 394

Query: 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM 341
            D+ L  +L+D+Y+KC  ++ A + F   + +N+  W  M+  YG+  N + + E+F  M
Sbjct: 395 ADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQM 454

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC--MVDLLGRA 399
           Q   + PN  T+   L  C   G +  G +I   + +      ++  Y C  ++D+  + 
Sbjct: 455 QMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIK---TGFQLNVYVCSVLIDMYAKY 511

Query: 400 GSLEQALKFVLEMPEKPNSDV--WAALLSSCRLHD 432
           G L  AL+ +  +PE    DV  W A+++    HD
Sbjct: 512 GQLALALRILRRLPE---DDVVSWTAMIAGYVQHD 543


>gi|359496846|ref|XP_002272372.2| PREDICTED: uncharacterized protein LOC100258406 [Vitis vinifera]
          Length = 1286

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 152/441 (34%), Positives = 251/441 (56%), Gaps = 13/441 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLI-LHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G  +HAH+  +    N  +   +++ ++ KCG L  A +MFDE+P + +  +  +IAG+ 
Sbjct: 106 GRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFS 165

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +N +  ++L L  +++  G +P+ +T S +LKAS       P     G  +HA  LK   
Sbjct: 166 QNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDP-----GTQLHAFCLKYGY 220

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-- 240
           ++   + +ALVD Y + G    A++ FD M  K+ +   ++ISG   +G  E A  +   
Sbjct: 221 QSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWK 280

Query: 241 --RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
             RK  +     Y++++   + SI    +   VH  +IK+       +G+ L+DMYAK G
Sbjct: 281 MQRKNFQPTHFTYSSVLSACA-SIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAG 339

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            IDDA+RVFD + + +V +W +M+ G  ++G   + L+ F  M    ++PN ++FL  L+
Sbjct: 340 SIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLT 399

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC H+GL+D+G   FE M++ Y ++P + HY   VDLLGR G L++A +F+ EMP +P +
Sbjct: 400 ACSHSGLLDEGLYYFELMKK-YKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTA 458

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            VW ALL +CR+H ++E+   AA   F+L+ +D  G  + LSN  A+AG+W  V ++R+ 
Sbjct: 459 AVWGALLGACRMHKNMELGVYAAERAFELDPHD-SGPRMLLSNIYASAGRWRDVAKVRKM 517

Query: 479 MKLRGVLKDTGCSWVGTESGL 499
           MK  GV K   CSWV  E+ +
Sbjct: 518 MKESGVKKQPACSWVEIENAV 538



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 76/287 (26%), Positives = 133/287 (46%), Gaps = 49/287 (17%)

Query: 188 LYTALVDSYVKGGKTSYARIVFDMM-----LEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           LY+ L+    + GK    RIV   +     L+ +++    +++ +   G ++DA  +F +
Sbjct: 89  LYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDE 148

Query: 243 TVEKDIVVYNAMIEGYS------------------------ISIETARKA---------- 268
              KD+V + A+I G+S                         ++ +  KA          
Sbjct: 149 MPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGFQPNHFTLSSLLKASGSEHGLDPG 208

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
            ++H   +K  +   V +GSALVDMYA+CG +D A+  FD M  K+  +W ++I G+ + 
Sbjct: 209 TQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARK 268

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G    AL L   MQ    QP + T+   LSAC   G +++G+ +   M     +K  ++ 
Sbjct: 269 GEGEHALHLLWKMQRKNFQPTHFTYSSVLSACASIGALEQGKWVHAHM-----IKSGLKL 323

Query: 389 YA----CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
            A     ++D+  +AGS++ A K V +   KP+   W  +L+ C  H
Sbjct: 324 IAFIGNTLLDMYAKAGSIDDA-KRVFDRLVKPDVVSWNTMLTGCAQH 369


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 149/459 (32%), Positives = 257/459 (55%), Gaps = 10/459 (2%)

Query: 38  SLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALK 97
           +L   + + +L + L    N      G  +HA+  K G       +  LL ++ KCG L 
Sbjct: 252 NLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLN 311

Query: 98  YAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
            A ++F ++ + T+ ++  +IA +++ G   E++ L  ++ S G RPD Y  + ++ A  
Sbjct: 312 GANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACA 371

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
           C  S      + GR VH  I K ++ ++  +  AL++ Y K G    A ++F  +  KN+
Sbjct: 372 CSNS-----LDKGREVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNI 426

Query: 218 ICSTSMISGFMSQGFVEDAEEIF---RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQ 274
           +   +MI G+       +A ++F   +K ++ D V    ++   +  +    K  E+H  
Sbjct: 427 VSWNTMIGGYSQNSLPNEALQLFLDMQKQLKPDDVTMACVLPACA-GLAALEKGREIHGH 485

Query: 275 LIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQA 334
           +++  +F D+ +  ALVDMY KCG +  A+++FD + +K++  WT MI GYG +G   +A
Sbjct: 486 ILRKGYFSDLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEA 545

Query: 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394
           +  F  M+   ++P   +F   L AC H+GL+ +G ++F+SM+ + +++PK+EHYACMVD
Sbjct: 546 ISTFEKMRVAGIEPEESSFTSILYACTHSGLLKEGWKLFDSMKSECNIEPKLEHYACMVD 605

Query: 395 LLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG 454
           LL R+G+L +A KF+  MP KP++ +W ALLS CR+H DVE+A   A  IF+L   +   
Sbjct: 606 LLIRSGNLSRAYKFIETMPIKPDAAIWGALLSGCRIHHDVELAEKVAEHIFELEPENTR- 664

Query: 455 AYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            YV L+N  A A KW+ V +++ ++   G+  D GCSW+
Sbjct: 665 YYVLLANVYAEAEKWEEVKKIQRRISKGGLKNDQGCSWI 703



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/357 (26%), Positives = 178/357 (49%), Gaps = 13/357 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H+ I+  G+  +  +  KL+ +++ CG L    ++FD +    +  +N +++ Y K
Sbjct: 76  GKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAK 135

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G   ES+ L  K+   G R D YTF+ +LK            R     VH  +LK    
Sbjct: 136 IGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVRECKR-----VHGYVLKLGFG 190

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           + + +  +L+ +Y K G+   ARI+FD + +++V+   SMISG    GF  +  E F + 
Sbjct: 191 SYNAVVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQM 250

Query: 244 VEKDI-----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
           +   +      + N ++   ++   T  +AL  H   +K  F   V   + L+DMY+KCG
Sbjct: 251 LNLGVDVDSATLVNVLVACANVGNLTLGRAL--HAYGVKAGFSGGVMFNNTLLDMYSKCG 308

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            ++ A  VF  M +  + +WTS+I  + + G   +A+ LF  MQ   ++P+       + 
Sbjct: 309 NLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVH 368

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
           AC  +  +DKGRE+   ++++ +M   +     ++++  + GS+E+A     ++P K
Sbjct: 369 ACACSNSLDKGREVHNHIKKN-NMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVK 424


>gi|356547226|ref|XP_003542017.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Glycine max]
          Length = 693

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 151/461 (32%), Positives = 250/461 (54%), Gaps = 33/461 (7%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HAH   +   P   IS +LL ++ KCG+L  A  +FDE+  R L ++N MI GY K
Sbjct: 106 GRRVHAHTKASNFVPGVFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAK 165

Query: 124 NGQVEESLSLVRKL---------------VSSGERPDGYTFSMILKASTCCRSN------ 162
            G++E++  L  ++               V+  +  +      +++      SN      
Sbjct: 166 LGRLEQARKLFDEMPQRDNFSWNAAISGYVTHNQPREALELFRVMQRHERSSSNKFTLSS 225

Query: 163 -------VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
                  +P  R LG+ +H  +++ ++  D+V+++AL+D Y K G    AR +FD M ++
Sbjct: 226 ALAASAAIPCLR-LGKEIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDR 284

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEG-YSISIETARKAL--EVH 272
           +V+  T+MI      G  E+   +FR  ++  +        G  +   + A + L  EVH
Sbjct: 285 DVVSWTTMIHRCFEDGRREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVH 344

Query: 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPN 332
             ++   +       SALV MY+KCG    ARRVF+ M Q ++ +WTS+I GY +NG P+
Sbjct: 345 GYMMHAGYDPGSFAISALVHMYSKCGNTRVARRVFNEMHQPDLVSWTSLIVGYAQNGQPD 404

Query: 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACM 392
           +AL  F ++ +   +P+ VT++G LSAC HAGLVDKG E F S++  + +    +HYAC+
Sbjct: 405 EALHFFELLLQSGTKPDQVTYVGVLSACTHAGLVDKGLEYFHSIKEKHGLMHTADHYACV 464

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR 452
           +DLL R+G  ++A   +  MP KP+  +WA+LL  CR+H ++E+A  AA  ++++   + 
Sbjct: 465 IDLLARSGRFKEAENIIDNMPVKPDKFLWASLLGGCRIHGNLELAKRAAKALYEIEPEN- 523

Query: 453 PGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           P  Y+ L+N  A AG W  V  +R+ M   G++K  G SW+
Sbjct: 524 PATYITLANIYANAGLWSEVANVRKDMDNMGIVKKPGKSWI 564



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 151/336 (44%), Gaps = 47/336 (13%)

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           +V+E++ L+ +   +  RP    +S ++ A  C R        LGR VHA     +    
Sbjct: 70  RVKEAVELLHR---TDHRPSARVYSTLIAA--CVRHRA---LELGRRVHAHTKASNFVPG 121

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             +   L+D Y K G    A+++FD M  +++    +MI G+   G +E A ++F +  +
Sbjct: 122 VFISNRLLDMYAKCGSLVDAQMLFDEMGHRDLCSWNTMIVGYAKLGRLEQARKLFDEMPQ 181

Query: 246 KDIVVYNAMIEGYSISIETARKAL------------------------------------ 269
           +D   +NA I GY ++    R+AL                                    
Sbjct: 182 RDNFSWNAAISGY-VTHNQPREALELFRVMQRHERSSSNKFTLSSALAASAAIPCLRLGK 240

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
           E+H  LI+     D  + SAL+D+Y KCG +D+AR +FD M+ ++V +WT+MI    ++G
Sbjct: 241 EIHGYLIRTELNLDEVVWSALLDLYGKCGSLDEARGIFDQMKDRDVVSWTTMIHRCFEDG 300

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
              +   LF  + +  V+PN  TF G L+AC        G+E+   M       P     
Sbjct: 301 RREEGFLLFRDLMQSGVRPNEYTFAGVLNACADHAAEHLGKEVHGYMMH-AGYDPGSFAI 359

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
           + +V +  + G+   A +   EM  +P+   W +L+
Sbjct: 360 SALVHMYSKCGNTRVARRVFNEM-HQPDLVSWTSLI 394


>gi|297835272|ref|XP_002885518.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331358|gb|EFH61777.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 904

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 167/502 (33%), Positives = 275/502 (54%), Gaps = 48/502 (9%)

Query: 29  FPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLI 88
           F   +++ D + N +T   + SA     + +T   G K++  I  +G++ N  +   L+ 
Sbjct: 222 FFRMVRDEDVIPNSVTMVCVISACAKLEDLET---GEKVYDFIRDSGIEVNDLMISALVD 278

Query: 89  LHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYT 148
           +++KC A+  A ++FDE     L   N M + Y++ G  +E+L ++  ++ SG RPD   
Sbjct: 279 MYMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPD--R 336

Query: 149 FSMILKASTCCRSNVPLPRNL--GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR 206
            SM+   S+C +      RN+  G+  H  +L+   ++ D +  AL+D Y+K  +   A 
Sbjct: 337 ISMLSAISSCSQ-----LRNILWGKSCHGYVLRNGFESWDNICNALIDMYMKCHRQDTAF 391

Query: 207 IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEG------YSI 260
            +FD M  K V+   S+++G++  G V+ A E F    EK+IV +N +I        Y  
Sbjct: 392 RIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMPEKNIVSWNTIISALVQENMYEE 451

Query: 261 SIETARKALEVHC---------------------QLIKNVFFE--------DVKLGSALV 291
           +IE         C                      L K +++         DV+LG+ LV
Sbjct: 452 AIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAKWIYYYIEKNRIQLDVRLGTTLV 511

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
           DM+++CG  + A  +F+ +  ++V  WT+ I      GN  +A+ELF  M E  ++P+ V
Sbjct: 512 DMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAMAMAGNVERAIELFNEMIEQGLKPDGV 571

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
            F+GAL+AC H GLV +G+EIF SME+ + + P+  HY CMVDLLGRAG LE+AL+ + +
Sbjct: 572 VFIGALTACCHGGLVQQGKEIFNSMEKLHGVSPEDVHYGCMVDLLGRAGLLEEALQLIKD 631

Query: 412 MPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471
           MP +PN  +W +LL++CR+  +VEMA  AA +I ++ A +R G+YV LSN  A+AG+W+ 
Sbjct: 632 MPTEPNDVIWNSLLAACRVQGNVEMAAFAAEKI-QVLAPERTGSYVLLSNVYASAGRWND 690

Query: 472 VTELREKMKLRGVLKDTGCSWV 493
           + ++R  MK +G+ K  G S +
Sbjct: 691 MAKVRLSMKEKGLRKPPGTSVI 712



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/309 (31%), Positives = 158/309 (51%), Gaps = 23/309 (7%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCG---ALKYAGQMFDELPQR-TLSAYNYMIAGYL 122
            H  +TK G+  + +   KL+    + G   +L +A ++F+      T   YN +I GY 
Sbjct: 50  FHLSLTKQGLDDDVSAITKLVARSCELGTRESLSFAKEVFENGESYGTCFMYNSLIRGYA 109

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            +G  +E++ L  ++++SG  PD YTF   L  S C +S     +  G  +H  I+K D 
Sbjct: 110 SSGLCKEAILLFIRMMNSGISPDKYTFPFGL--SVCAKSR---DKGNGIQIHGLIIKMDY 164

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             D  +  +LV  Y + G+   AR VFD M E+NV+  TSMI G+  + F +DA ++F +
Sbjct: 165 AKDLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFR 224

Query: 243 TVEKDIVVYNAMIEGYSIS-------IETARKALEVHCQLIKNVFFE--DVKLGSALVDM 293
            V  + V+ N++     IS       +ET  K  +     I++   E  D+ + SALVDM
Sbjct: 225 MVRDEDVIPNSVTMVCVISACAKLEDLETGEKVYD----FIRDSGIEVNDLMI-SALVDM 279

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           Y KC  ID A+R+FD     N+    +M   Y + G   +AL +  +M +  ++P+ ++ 
Sbjct: 280 YMKCNAIDIAKRLFDEYGASNLDLCNAMASNYVRQGLTKEALGVLNLMMDSGIRPDRISM 339

Query: 354 LGALSACGH 362
           L A+S+C  
Sbjct: 340 LSAISSCSQ 348



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 188/436 (43%), Gaps = 43/436 (9%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           + P  L     S     G++IH  I K     +  +   L+  + +CG L  A ++FDE+
Sbjct: 135 TFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAKDLFVQNSLVHFYAECGELDCARKVFDEM 194

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGER-PDGYTFSMILKASTCCRSNVPL 165
            +R + ++  MI GY +    ++++ L  ++V   +  P+  T  M+   S C +     
Sbjct: 195 SERNVVSWTSMICGYARREFAKDAVDLFFRMVRDEDVIPNSVT--MVCVISACAKLE--- 249

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
               G  V+  I    ++ +D++ +ALVD Y+K      A+ +FD     N+    +M S
Sbjct: 250 DLETGEKVYDFIRDSGIEVNDLMISALVDMYMKCNAIDIAKRLFDEYGASNLDLCNAMAS 309

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL---EVHCQLIKNVFFE 282
            ++ QG  ++A  +    ++  I      +     S    R  L     H  +++N F  
Sbjct: 310 NYVRQGLTKEALGVLNLMMDSGIRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFES 369

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
              + +AL+DMY KC + D A R+FD M  K V TW S++ GY +NG  + A E F  M 
Sbjct: 370 WDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYIENGEVDAAWETFNTMP 429

Query: 343 EC--------------------------------CVQPNYVTFLGALSACGHAGLVDKGR 370
           E                                 CV  + VT +   SACGH G +D  +
Sbjct: 430 EKNIVSWNTIISALVQENMYEEAIEVFHYMQSQECVNVDGVTMMSIASACGHLGALDLAK 489

Query: 371 EIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRL 430
            I+  +E++  ++  +     +VD+  R G  E A+     +  +  S  W A + +  +
Sbjct: 490 WIYYYIEKN-RIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVS-AWTAAIGAMAM 547

Query: 431 HDDVEMANIAANEIFK 446
             +VE A    NE+ +
Sbjct: 548 AGNVERAIELFNEMIE 563



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 129/250 (51%), Gaps = 11/250 (4%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGG---KTSYARIVFDMMLEKNVIC--STSMIS 225
           +M H  + K  +  D    T LV    + G     S+A+ VF+   E    C    S+I 
Sbjct: 48  KMFHLSLTKQGLDDDVSAITKLVARSCELGTRESLSFAKEVFENG-ESYGTCFMYNSLIR 106

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE-GYSISIETARKA--LEVHCQLIKNVFFE 282
           G+ S G  ++A  +F + +   I         G S+  ++  K   +++H  +IK  + +
Sbjct: 107 GYASSGLCKEAILLFIRMMNSGISPDKYTFPFGLSVCAKSRDKGNGIQIHGLIIKMDYAK 166

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC-MM 341
           D+ + ++LV  YA+CG++D AR+VFD M ++NV +WTSMI GY +      A++LF  M+
Sbjct: 167 DLFVQNSLVHFYAECGELDCARKVFDEMSERNVVSWTSMICGYARREFAKDAVDLFFRMV 226

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGS 401
           ++  V PN VT +  +SAC     ++ G ++++ + RD  ++      + +VD+  +  +
Sbjct: 227 RDEDVIPNSVTMVCVISACAKLEDLETGEKVYDFI-RDSGIEVNDLMISALVDMYMKCNA 285

Query: 402 LEQALKFVLE 411
           ++ A +   E
Sbjct: 286 IDIAKRLFDE 295


>gi|296082238|emb|CBI21243.3| unnamed protein product [Vitis vinifera]
          Length = 778

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 143/430 (33%), Positives = 248/430 (57%), Gaps = 15/430 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G + HAH+   G + +  ++  L+ ++ + G   ++ Q+F+ +P+R + +++ M+  Y  
Sbjct: 119 GARAHAHVVVFGYESDVFVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAH 178

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG+ EE L L  ++++ G  P+  +   I+ A  C         +  R+V    +   + 
Sbjct: 179 NGRYEEGLLLFWRMLNEGIAPNRGS---IVNAMACIHREHE-ADDFCRVV----IDNGLD 230

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +D  +  A +  Y + G+   AR  F  +L+K+++  TSMI  ++      +A E+F++ 
Sbjct: 231 SDQSVQNAAMGMYARCGRIDVARRFFYGILDKDLVAWTSMIEAYVQADLPINALELFKQM 290

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               +  D V   ++I   S ++ + + A  VH  + ++ F   + L +A++D+Y KCG 
Sbjct: 291 KLLGIVPDSVTLLSLIHAVS-NLASFQLARFVHGVITRSFFKNHIALDTAVIDLYVKCGN 349

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ++ AR+ FD M  +N+ +W++MI GYG +G+  +AL LF  M+   ++P+++ F+  LSA
Sbjct: 350 LEYARKCFDRMSARNLISWSTMISGYGMHGHGREALCLFDQMK-ASIKPDHIAFVMVLSA 408

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H GL+ +G E F++M RD+ + P+ EHYACMVDLLGRAG L +A  F+  MP  P++ 
Sbjct: 409 CSHGGLIAEGWECFKAMNRDFGVTPRTEHYACMVDLLGRAGRLSEAQAFIERMPITPDAG 468

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW ALL +CR+H ++E A  AA  +F L+A + PG Y+ LSN  A++GK     ++R  M
Sbjct: 469 VWGALLGACRIHSNLETAETAARHLFNLDA-ENPGRYILLSNIYASSGKRKEADDIRALM 527

Query: 480 KLRGVLKDTG 489
           K RGV K  G
Sbjct: 528 KSRGVRKTVG 537



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 168/365 (46%), Gaps = 9/365 (2%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +HA I K+ + P+  +   L+  +   G++ +A  +F       +  +N++I  +     
Sbjct: 23  LHASILKSHLHPH--LCTSLIAQYASLGSISHAYALFSTSHSSNVFLWNHIIRAFSNTPH 80

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
              SL L  +++  G +   +TF  +LKA  C          LG   HA ++    ++D 
Sbjct: 81  SRNSLRLYSRMLQLGIQATNFTFPFLLKACGCLAD-----FELGARAHAHVVVFGYESDV 135

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
            +  +L+  Y + G   ++R VF+ M E+NV+  +SM+  +   G  E+   +F + + +
Sbjct: 136 FVANSLMAMYGRFGCFDFSRQVFERMPERNVVSWSSMVGAYAHNGRYEEGLLLFWRMLNE 195

Query: 247 DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRV 306
            I      I      I    +A +    +I N    D  + +A + MYA+CG+ID ARR 
Sbjct: 196 GIAPNRGSIVNAMACIHREHEADDFCRVVIDNGLDSDQSVQNAAMGMYARCGRIDVARRF 255

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           F  +  K++  WTSMI+ Y +   P  ALELF  M+   + P+ VT L  + A  +    
Sbjct: 256 FYGILDKDLVAWTSMIEAYVQADLPINALELFKQMKLLGIVPDSVTLLSLIHAVSNLASF 315

Query: 367 DKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
              R +   + R +  K  +     ++DL  + G+LE A K    M  + N   W+ ++S
Sbjct: 316 QLARFVHGVITRSF-FKNHIALDTAVIDLYVKCGNLEYARKCFDRMSAR-NLISWSTMIS 373

Query: 427 SCRLH 431
              +H
Sbjct: 374 GYGMH 378


>gi|242076234|ref|XP_002448053.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
 gi|241939236|gb|EES12381.1| hypothetical protein SORBIDRAFT_06g020256 [Sorghum bicolor]
          Length = 693

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 154/436 (35%), Positives = 246/436 (56%), Gaps = 15/436 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  I A+  K G+  +  +   L+ ++  C  +  A  +FD + +  +  +N +I  Y+K
Sbjct: 138 GRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVEENGVVMWNAIITAYMK 197

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG   E + + + ++  G   D  T   ++ A  C R        LG+ V   + +  + 
Sbjct: 198 NGNWMEVVEMFKGMLEVGVAFDEITLVSVVTA--CGRIG---DAKLGKWVAEYVDEKGLV 252

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +  L TAL+D Y K G+   AR +FD M  ++V+  ++MISG+       +A  +F + 
Sbjct: 253 RNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQCREALALFSEM 312

Query: 244 ----VEKDIVVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
               VE + V   +++   ++  ++ET +    VH  + +      + LG+ALVD YAKC
Sbjct: 313 QLAEVEPNDVTMVSVLSACAVLGALETGKW---VHSYIRRKRLSLTIILGTALVDFYAKC 369

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G IDDA   F+ M  KN +TWT++I G   NG   +ALELF  M++  ++P  VTF+G L
Sbjct: 370 GCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMRKASIEPTDVTFIGVL 429

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            AC H+ LV++GR  F+SM +DY +KP+ EHY C+VDLLGRAG +++A +F+  MP +PN
Sbjct: 430 MACSHSCLVEEGRRHFDSMTQDYGIKPRAEHYGCVVDLLGRAGLIDEAYQFIRTMPIEPN 489

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
           + +W ALLSSC +H +VE+   A  +I  LN +   G Y+ LSN  A+ G+W +   +R+
Sbjct: 490 AVIWRALLSSCAVHKNVEIGEEALKQIVSLNPS-HSGDYILLSNIYASVGQWKNAAMIRK 548

Query: 478 KMKLRGVLKDTGCSWV 493
           +MK RG+ K  GCS +
Sbjct: 549 EMKDRGIEKTPGCSLI 564



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 112/395 (28%), Positives = 188/395 (47%), Gaps = 22/395 (5%)

Query: 42  PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGA-----L 96
           P  A + P+     + +D P Y  ++HA + K+G       S K     L+  A     L
Sbjct: 11  PTPAGAGPAPPHAPLRTD-PRYLPQLHAALIKSG---ELTGSPKCFHSLLEAAAASPTLL 66

Query: 97  KYAGQMFDELPQRTLSA--YNYMIAGYLKNGQVEESLSL-VRKLVSSGERPDGYTFSMIL 153
            YA  +F   P+  LS   YN ++   L  G  E++L L V  L  +   PD +T +  L
Sbjct: 67  PYAVSLFRLGPRPPLSTPCYNVLMRALLHAGHPEDALHLFVEMLDVASVCPDQHTVACAL 126

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
           K  +C R       ++GR + A  +K  + AD  + ++L+  Y      + A+++FD + 
Sbjct: 127 K--SCSRMCT---LDVGRGIQAYAVKRGLMADRFVLSSLIHMYASCRDVAAAQLLFDAVE 181

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS---IETARKALE 270
           E  V+   ++I+ +M  G   +  E+F+  +E  +      +     +   I  A+    
Sbjct: 182 ENGVVMWNAIITAYMKNGNWMEVVEMFKGMLEVGVAFDEITLVSVVTACGRIGDAKLGKW 241

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           V   + +     +  L +AL+DMYAKCG++  ARR+FD MQ ++V  W++MI GY +   
Sbjct: 242 VAEYVDEKGLVRNRNLMTALIDMYAKCGELGKARRLFDGMQSRDVVAWSAMISGYTQADQ 301

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
             +AL LF  MQ   V+PN VT +  LSAC   G ++ G+ +   + R   +   +    
Sbjct: 302 CREALALFSEMQLAEVEPNDVTMVSVLSACAVLGALETGKWVHSYIRRK-RLSLTIILGT 360

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
            +VD   + G ++ A++    MP K NS  W AL+
Sbjct: 361 ALVDFYAKCGCIDDAVEAFESMPVK-NSWTWTALI 394


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 156/457 (34%), Positives = 251/457 (54%), Gaps = 14/457 (3%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           NP   TS+   L+  +   +   G  IH    KT      ++   LL ++ KCG +K A 
Sbjct: 262 NPFALTSV---LKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDAR 318

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
             F+ +P   +   ++MI+ Y ++ Q E++  L  +L+ S   P+ Y+ S +L+A   C 
Sbjct: 319 LAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQA---CT 375

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           + V L  + G+ +H   +K   ++D  +  AL+D Y K      +  +F  + + N +  
Sbjct: 376 NMVQL--DFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSW 433

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLI 276
            +++ GF   G  E+A  +F +     +    V Y++++   + S  + R A ++HC + 
Sbjct: 434 NTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACA-STASIRHAGQIHCSIE 492

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           K+ F  D  +G++L+D YAKCG I DA +VF H+ ++++ +W ++I GY  +G    ALE
Sbjct: 493 KSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALE 552

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           LF  M +  V+ N +TF+  LS C   GLV+ G  +F+SM  D+ +KP MEHY C+V LL
Sbjct: 553 LFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLL 612

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456
           GRAG L  AL+F+ ++P  P++ VW ALLSSC +H +V +   +A +I ++   D    Y
Sbjct: 613 GRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDET-TY 671

Query: 457 VALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           V LSN  AAAG  D V  LR+ M+  GV K  G SWV
Sbjct: 672 VLLSNMYAAAGSLDQVALLRKSMRNIGVRKVPGLSWV 708



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 148/315 (46%), Gaps = 12/315 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHL--KCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           G  +H H+ + G     ++    ++L++  K G L  A ++FD +P+R + ++  ++  +
Sbjct: 78  GRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAH 137

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            + G  E + +L R+L   G   + +  + +LK +    +       L   VH+   K  
Sbjct: 138 AQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDAA-----GLAGGVHSCAWKLG 192

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
              +  + + L+D+Y      S A  VF+ ++ K+ +  T+M+S +      E+A  +F 
Sbjct: 193 HDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFS 252

Query: 242 KT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           K      + +     ++++  ++ + +      +H   IK +   +  +G AL+DMYAKC
Sbjct: 253 KMRVSGCKPNPFALTSVLKA-AVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKC 311

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G I DAR  F+ +   +V   + MI  Y ++    QA ELF  +    V PN  +    L
Sbjct: 312 GDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVL 371

Query: 358 SACGHAGLVDKGREI 372
            AC +   +D G++I
Sbjct: 372 QACTNMVQLDFGKQI 386


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  271 bits (694), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 153/432 (35%), Positives = 236/432 (54%), Gaps = 11/432 (2%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IH +I +  V  +  +   L+ ++ KC  ++ A +   +           MI+GY+ NG
Sbjct: 281 EIHGYIIRHAVVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNG 340

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           + +E+L   R LV    +P   TFS I  A     +      NLG+ +H  I+K  +   
Sbjct: 341 KNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAA-----LNLGKELHGSIIKTKLDEK 395

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT-- 243
             + +A++D Y K G+   A  VF+ + EK+ IC  SMI+     G   +A  +FR+   
Sbjct: 396 CHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGM 455

Query: 244 --VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
                D V  +  +   + ++       E+H  +IK     D+   S+L+DMYAKCG ++
Sbjct: 456 EGTRYDCVSISGALSACA-NLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLN 514

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            +RRVFD MQ+KN  +W S+I  YG +G+  + L LF  M    +QP++VTFLG +SACG
Sbjct: 515 FSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACG 574

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
           HAG VD+G   +  M  +Y +  +MEHYAC+ D+ GRAG L +A + +  MP  P++ VW
Sbjct: 575 HAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINSMPFPPDAGVW 634

Query: 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
             LL +C +H +VE+A +A+  +F L+  +  G YV L+N  A AGKW  V ++R  MK 
Sbjct: 635 GTLLGACHIHGNVELAEVASKHLFDLDPLN-SGYYVLLANVQAGAGKWRKVLKVRSIMKE 693

Query: 482 RGVLKDTGCSWV 493
           RGV K  G SW+
Sbjct: 694 RGVRKVPGYSWI 705



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/411 (27%), Positives = 210/411 (51%), Gaps = 12/411 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H      G++ ++ ++  LL ++ KC  L+ A ++FD LPQ  L ++N +I+GY++
Sbjct: 178 GTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQ 237

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG + E+  L R ++S+G +PD  TF+  L        N  L     + +H  I++  V 
Sbjct: 238 NGLMGEAEHLFRGMISAGIKPDSITFASFLPC-----VNELLSLKHCKEIHGYIIRHAVV 292

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  L +AL+D Y K      A+         + +  T+MISG++  G  ++A E FR  
Sbjct: 293 LDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWL 352

Query: 244 VEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           V++ +    V ++++   ++  +       E+H  +IK    E   +GSA++DMYAKCG+
Sbjct: 353 VQERMKPTSVTFSSIFPAFA-GLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGR 411

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +D A RVF+ + +K+   W SMI    +NG P +A+ LF  M     + + V+  GALSA
Sbjct: 412 LDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSA 471

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C +   +  G+EI   M +   ++  +   + ++D+  + G+L  + +    M EK N  
Sbjct: 472 CANLPALHYGKEIHGLMIKG-PLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEK-NEV 529

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
            W +++S+   H D++      +E+ +         ++ + +    AG+ D
Sbjct: 530 SWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISACGHAGQVD 580



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 197/415 (47%), Gaps = 32/415 (7%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H  +   G+K +  +   L+ L+ + G L  A  +FD +PQ+    +N M+ GY+K
Sbjct: 77  GKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVK 136

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG    ++ +  ++  S  +P+  TF+ +L   + C S   L  +LG  +H   + C ++
Sbjct: 137 NGDSGNAIKIFLEMRHSEIKPNSVTFACVL---SVCASEAML--DLGTQLHGIAVGCGLE 191

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR-- 241
            D  +   L+  Y K      AR +FD + + +++    +ISG++  G + +AE +FR  
Sbjct: 192 LDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGM 251

Query: 242 --KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               ++ D + + + +   +  + + +   E+H  +I++    DV L SAL+D+Y KC  
Sbjct: 252 ISAGIKPDSITFASFLPCVN-ELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRD 310

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ++ A++        +    T+MI GY  NG   +ALE F  + +  ++P  VTF     A
Sbjct: 311 VEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPA 370

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
                 ++ G+E+  S+ +   +  K    + ++D+  + G L+ A +    + EK ++ 
Sbjct: 371 FAGLAALNLGKELHGSIIKT-KLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEK-DAI 428

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG-KWDSVT 473
            W ++++SC                   + N RPG  + L   +   G ++D V+
Sbjct: 429 CWNSMITSC-------------------SQNGRPGEAINLFRQMGMEGTRYDCVS 464



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 75/269 (27%), Positives = 140/269 (52%), Gaps = 10/269 (3%)

Query: 89  LHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYT 148
           ++++ G+LK A  +F  L     SA+N+MI G+   GQ   +L    K++ +G  PD YT
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIV 208
           F  ++KA  CC         +G++VH  +    +K D  + ++L+  Y + G  S A+ +
Sbjct: 61  FPYVVKA--CCGLK---SVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYL 115

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKA 268
           FD + +K+ +    M++G++  G   +A +IF +    +I   N++     +S+  +   
Sbjct: 116 FDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKP-NSVTFACVLSVCASEAM 174

Query: 269 LEVHCQL----IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
           L++  QL    +      D  + + L+ MY+KC  +  AR++FD + Q ++ +W  +I G
Sbjct: 175 LDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISG 234

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTF 353
           Y +NG   +A  LF  M    ++P+ +TF
Sbjct: 235 YVQNGLMGEAEHLFRGMISAGIKPDSITF 263



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 60/110 (54%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
            S+  AL    N     YG +IH  + K  ++ +      L+ ++ KCG L ++ ++FD 
Sbjct: 463 VSISGALSACANLPALHYGKEIHGLMIKGPLRSDLYAESSLIDMYAKCGNLNFSRRVFDR 522

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           + ++   ++N +I+ Y  +G ++E L+L  +++ +G +PD  TF  I+ A
Sbjct: 523 MQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFLGIISA 572



 Score = 47.8 bits (112), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 2/134 (1%)

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           MY + G + DA+ +F  +Q      W  MI G+   G  N AL  +  M    V P+  T
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
           F   + AC     V  G+ + E++     +K  +   + ++ L    G L  A      +
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNL-MGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 413 PEKPNSDVWAALLS 426
           P+K +S +W  +L+
Sbjct: 120 PQK-DSVLWNVMLN 132


>gi|297606175|ref|NP_001058069.2| Os06g0613100 [Oryza sativa Japonica Group]
 gi|255677226|dbj|BAF19983.2| Os06g0613100 [Oryza sativa Japonica Group]
          Length = 590

 Score =  271 bits (694), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 143/448 (31%), Positives = 261/448 (58%), Gaps = 12/448 (2%)

Query: 50  SALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQR 109
           +A+   I     + G ++HA +     +P   +  +L+ ++++CGAL  A  + D +P+R
Sbjct: 15  AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPER 74

Query: 110 TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL 169
           ++ ++  MI+GY +  +  E+L L  K++ +G  P+ YT + +L   T C    P     
Sbjct: 75  SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVL---TSCSG--PQSIYQ 129

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           G+ VH+ ++K + ++   + ++L+D Y K      AR VFD + E++V+  T++ISG+  
Sbjct: 130 GKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQ 189

Query: 230 QGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
           +G  E+A ++FR+   + +    V +  ++   S  + +     +VH  +++      V 
Sbjct: 190 KGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALS-GLASLDYGKQVHALILRKELPFFVA 248

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           L ++L+DMY+KCGK+  +RRVFD+M +++V +W +M+ GYG++G  ++ + LF  + +  
Sbjct: 249 LQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE- 307

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
           V+P+ VT L  LS C H GLVD+G +IF+++ ++ S      HY C++DLLGR+G LE+A
Sbjct: 308 VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKA 367

Query: 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465
           L  +  MP +    +W +LL +CR+H +V +  + A ++ ++   +  G YV LSN  AA
Sbjct: 368 LNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPEN-AGNYVILSNIYAA 426

Query: 466 AGKWDSVTELREKMKLRGVLKDTGCSWV 493
           AG W  V ++R+ M  + V K+ G SW+
Sbjct: 427 AGMWKDVFKVRKLMLEKTVTKEPGQSWI 454



 Score =  101 bits (251), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 97/372 (26%), Positives = 176/372 (47%), Gaps = 50/372 (13%)

Query: 33  LQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLK 92
           + N  +L+  LT+ S P ++         + G ++H+ + KT  + +  +   LL ++ K
Sbjct: 108 IPNEYTLATVLTSCSGPQSI---------YQGKQVHSLLVKTNFESHMFVGSSLLDMYAK 158

Query: 93  CGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
              ++ A ++FD LP+R + +   +I+GY + G  EE+L L R+L S G + +  TF+ +
Sbjct: 159 SENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTL 218

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           + A +   S      + G+ VHA IL+ ++     L  +L+D Y K GK  Y+R VFD M
Sbjct: 219 VTALSGLAS-----LDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNM 273

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFR---KTVEKDIVVYNAMIEGYSISIETARKAL 269
           LE++V+   +M+ G+   G   +   +F+   K V+ D V   A++ G S          
Sbjct: 274 LERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKEVKPDSVTLLAVLSGCS---------- 323

Query: 270 EVHCQLIK---NVFFEDVKLGSAL---------VDMYAKCGKIDDARRVFDHMQ-QKNVF 316
             H  L+    ++F   VK  SAL         +D+  + G+++ A  + ++M  +    
Sbjct: 324 --HGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPS 381

Query: 317 TWTSMIDGYGKNGNPN----QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
            W S++     + N +     A +L  M  E     NYV      +A G    V K R++
Sbjct: 382 IWGSLLGACRVHANVHVGELVAQKLLEMEPENA--GNYVILSNIYAAAGMWKDVFKVRKL 439

Query: 373 FESMERDYSMKP 384
              +E+  + +P
Sbjct: 440 M--LEKTVTKEP 449


>gi|449440359|ref|XP_004137952.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g37310-like [Cucumis sativus]
          Length = 595

 Score =  271 bits (694), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 151/469 (32%), Positives = 253/469 (53%), Gaps = 41/469 (8%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++H+ I + G++ +  +   L+  + +C  L  A  MFD +P+R + ++N M+AGY + G
Sbjct: 129 EVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDIVSWNAMLAGYSQGG 188

Query: 126 QVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
             E+   L R ++SS E +P+  T   +L+A  C +SN  +    G  VH  + +  +K 
Sbjct: 189 SYEKCKELFRVMLSSLEVKPNALTAVSVLQA--CAQSNDLI---FGIEVHRFVNESQIKM 243

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
           D  L+ A++  Y K G   YAR +F+ MLEK+ I   SMISG+M  GFV  A ++FR+  
Sbjct: 244 DVSLWNAVIGLYAKCGSLDYARELFEEMLEKDAITYCSMISGYMVHGFVNQAMDLFREQE 303

Query: 245 EKDIVVYNAMIEGY--------SISI--------------------------ETARKALE 270
              +  +NA+I G         ++ I                           T +   E
Sbjct: 304 RPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKE 363

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           +H   I+N +  ++ + +A++D YAKCG +  A+ VFD ++ +++  WTS+I  Y  +G+
Sbjct: 364 IHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGD 423

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
            N AL LF  M    +QP+ VTF   L+AC H+G +D+  +IF  +  +Y ++P +EHYA
Sbjct: 424 ANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYA 483

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
           CMV +L RAG L  A++F+ +MP +P + VW ALL+   +  DVE+     + +F++   
Sbjct: 484 CMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEP- 542

Query: 451 DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           +  G YV ++N  + +G+W     +R+ MK   + K  G SW+ T  G+
Sbjct: 543 ENTGNYVIMANLYSQSGRWKDADTIRDLMKEVRLKKIPGNSWIETSGGM 591



 Score =  144 bits (363), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 122/469 (26%), Positives = 218/469 (46%), Gaps = 54/469 (11%)

Query: 58  SDTPFY--GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYN 115
           +D  F+  G ++HA +  + V P+  +  KL+  + K G+++ A  +F ++P++ + ++N
Sbjct: 14  TDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWN 73

Query: 116 YMIAGYLKNGQVEESLSLVRKLVSSGE---RPDGYTFSMILKASTCCRSNVPLPRNLGRM 172
            ++  Y  +    + L L   LV+S     +PD +T +  LKA     SN      L + 
Sbjct: 74  ALLISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCALKALASLFSN----SGLAKE 129

Query: 173 VHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGF 232
           VH+ IL+  ++ D  +  AL+  Y +  +   ARI+FD M E++++   +M++G+   G 
Sbjct: 130 VHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDIVSWNAMLAGYSQGGS 189

Query: 233 VEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARK-----ALEVHCQLIKNVFFEDVKLG 287
            E  +E+FR  +    V  NA+    S+    A+       +EVH  + ++    DV L 
Sbjct: 190 YEKCKELFRVMLSSLEVKPNAL-TAVSVLQACAQSNDLIFGIEVHRFVNESQIKMDVSLW 248

Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL---------- 337
           +A++ +YAKCG +D AR +F+ M +K+  T+ SMI GY  +G  NQA++L          
Sbjct: 249 NAVIGLYAKCGSLDYARELFEEMLEKDAITYCSMISGYMVHGFVNQAMDLFREQERPRLP 308

Query: 338 ---------------------FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM 376
                                F  MQ    +PN VT    L    H   +  G+EI    
Sbjct: 309 TWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHGYA 368

Query: 377 ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEM 436
            R+ +    +     ++D   + G L  A + V +  +  +   W +++S+  +H D   
Sbjct: 369 IRN-TYDRNIYVATAIIDSYAKCGYLHGA-QLVFDQIKGRSLIAWTSIISAYAVHGD--- 423

Query: 437 ANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485
           AN+A +  +++  N      V  ++ LAA        EL E  K+  VL
Sbjct: 424 ANVALSLFYEMLTNGIQPDQVTFTSVLAACAH---SGELDEAWKIFNVL 469



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 151/328 (46%), Gaps = 14/328 (4%)

Query: 169 LGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM 228
           +G+ +HA+++   V  D+ L + L+  Y K G    A  VF  +  KN+    +++  + 
Sbjct: 21  VGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNALLISYT 80

Query: 229 SQGFVEDAEEIFRKTV-------EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFF 281
                 D  ++F   V       + D       ++  +     +  A EVH  +++    
Sbjct: 81  LHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCALKALASLFSNSGLAKEVHSFILRRGLE 140

Query: 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF-CM 340
            D+ + +AL+  Y++C ++  AR +FD M ++++ +W +M+ GY + G+  +  ELF  M
Sbjct: 141 YDIFVVNALITFYSRCDELVLARIMFDRMPERDIVSWNAMLAGYSQGGSYEKCKELFRVM 200

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           +    V+PN +T +  L AC  +  +  G E+   +     +K  +  +  ++ L  + G
Sbjct: 201 LSSLEVKPNALTAVSVLQACAQSNDLIFGIEVHRFVNES-QIKMDVSLWNAVIGLYAKCG 259

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
           SL+ A +   EM EK ++  + +++S   +H  V      A ++F+     R   + A+ 
Sbjct: 260 SLDYARELFEEMLEK-DAITYCSMISGYMVHGFVNQ----AMDLFREQERPRLPTWNAVI 314

Query: 461 NTLAAAGKWDSVTELREKMKLRGVLKDT 488
           + L    + +   ++   M+  G   +T
Sbjct: 315 SGLVQNNRQEGAVDIFRAMQSHGCRPNT 342



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 84/391 (21%), Positives = 193/391 (49%), Gaps = 33/391 (8%)

Query: 27  QTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKL 86
           + F   L + +   N LTA S+   LQ    S+   +G+++H  + ++ +K + ++   +
Sbjct: 195 ELFRVMLSSLEVKPNALTAVSV---LQACAQSNDLIFGIEVHRFVNESQIKMDVSLWNAV 251

Query: 87  LILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDG 146
           + L+ KCG+L YA ++F+E+ ++    Y  MI+GY+ +G V +++ L R+     ERP  
Sbjct: 252 IGLYAKCGSLDYARELFEEMLEKDAITYCSMISGYMVHGFVNQAMDLFRE----QERPRL 307

Query: 147 YTFSMILKASTCCRSNVPLPRNLGRM-VHAQILKCDVKADDVLYTALVD-----SYVKGG 200
            T++ ++  S   ++N    R  G + +   +     + + V   +++      S +KGG
Sbjct: 308 PTWNAVI--SGLVQNN----RQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGG 361

Query: 201 KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI 260
           K  +   + +   ++N+  +T++I  +   G++  A+ +F +   + ++ + ++I  Y++
Sbjct: 362 KEIHGYAIRNTY-DRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAV 420

Query: 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ-----QKNV 315
             + A  AL +  +++ N    D    ++++   A  G++D+A ++F+ +      Q  V
Sbjct: 421 HGD-ANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLV 479

Query: 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES 375
             +  M+    + G  + A+E    M    ++P    +   L+    AG V+ G+ +F  
Sbjct: 480 EHYACMVGVLSRAGKLSDAVEFISKMP---LEPTAKVWGALLNGASVAGDVELGKYVF-- 534

Query: 376 MERDYSMKPK-MEHYACMVDLLGRAGSLEQA 405
            +R + ++P+   +Y  M +L  ++G  + A
Sbjct: 535 -DRLFEIEPENTGNYVIMANLYSQSGRWKDA 564


>gi|357481283|ref|XP_003610927.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512262|gb|AES93885.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 802

 Score =  271 bits (694), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 151/460 (32%), Positives = 248/460 (53%), Gaps = 31/460 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HAH   +   P   IS +L+ ++ KCG+L  A  +FDE+PQ+ L ++N MI+GY  
Sbjct: 82  GKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYAN 141

Query: 124 NGQVEESLSLVRKL----------VSSGERPDGY------TFSMILK--ASTC------- 158
            G++E++  L  ++          V SG    G+       F M+ +  +S C       
Sbjct: 142 VGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLSS 201

Query: 159 --CRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216
               +        G+ +H  +++  ++ D+V++TAL+D Y K G  + AR +FD M +K+
Sbjct: 202 ALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADKD 261

Query: 217 VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY---SISIETARKALEVHC 273
           ++  T+MI      G  ++   +FR  +   +        G       +   +   EVH 
Sbjct: 262 IVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVHG 321

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
            + +  +       SALV +Y+KCG  + ARRVF+ M + ++ +WTS+I GY +NG P+ 
Sbjct: 322 YMTRVGYDPFSFAASALVHVYSKCGNTETARRVFNQMPRPDLVSWTSLIVGYAQNGQPDM 381

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMV 393
           AL+ F  +     +P+ +TF+G LSAC HAGLVD G E F S++  + +    +HYAC++
Sbjct: 382 ALQFFESLLRSGTKPDEITFVGVLSACTHAGLVDIGLEYFHSVKEKHGLVHTADHYACVI 441

Query: 394 DLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRP 453
           DLL R+G  ++A   +  MP KP+  +WA+LL  CR+H ++E+A  AA  +F+L   + P
Sbjct: 442 DLLARSGRFKEAENIIDNMPMKPDKFLWASLLGGCRIHGNIELAERAAKALFELEPEN-P 500

Query: 454 GAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             Y+ LSN  A AG W   T++R  M  RG++K  G SW+
Sbjct: 501 ATYITLSNIYANAGLWTEETKVRNDMDNRGIVKKPGKSWI 540



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 78/292 (26%), Positives = 137/292 (46%), Gaps = 37/292 (12%)

Query: 169 LGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM 228
           LG+ VHA     +     V+   L+  Y K G    A+++FD + +K++    +MISG+ 
Sbjct: 81  LGKRVHAHTKASNFIPGIVISNRLIHMYAKCGSLVDAQMLFDEIPQKDLCSWNTMISGYA 140

Query: 229 SQGFVEDAEEIFRKTVEKDIVVYNAMIEGY------------------------------ 258
           + G +E A ++F +   +D   +NA+I GY                              
Sbjct: 141 NVGRIEQARKLFDEMPHRDNFSWNAVISGYVSQGWYMEALDLFRMMQENESSNCNMFTLS 200

Query: 259 -----SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK 313
                + +I + R+  E+H  LI++    D  + +AL+D+Y KCG +++AR +FD M  K
Sbjct: 201 SALAAAAAISSLRRGKEIHGYLIRSGLELDEVVWTALLDLYGKCGSLNEARGIFDQMADK 260

Query: 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF 373
           ++ +WT+MI    ++G   +   LF  +    V+PN  TF G L+AC        G+E+ 
Sbjct: 261 DIVSWTTMIHRCFEDGRKKEGFSLFRDLMGSGVRPNEYTFAGVLNACADLAAEQMGKEVH 320

Query: 374 ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
             M R     P     + +V +  + G+ E A +   +MP +P+   W +L+
Sbjct: 321 GYMTR-VGYDPFSFAASALVHVYSKCGNTETARRVFNQMP-RPDLVSWTSLI 370


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  271 bits (693), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 162/438 (36%), Positives = 245/438 (55%), Gaps = 20/438 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+ I    +K G+  +  +   L+ L+ KCG       +FD++ Q  L +YN MI+GY  
Sbjct: 233 GMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTF 292

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRN---LGRMVHAQILKC 180
           N + E +++L R+L++SG+R +  T   ++         V LP N   L R++    LK 
Sbjct: 293 NHETESAVTLFRELLASGQRVNSSTLVGLIP--------VYLPFNHLQLSRLIQNLSLKI 344

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
            +     + TAL   Y +  +  +AR +FD   EK++    +MISG+   G  + A  +F
Sbjct: 345 GIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLF 404

Query: 241 RKTVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFE-DVKLGSALVDMYA 295
           ++ + +  +  N +     +S      AL     VH  LIK+   E +V + +ALVDMYA
Sbjct: 405 QEMMPQ--LSPNPVTVTSILSACAQLGALSIGKWVH-GLIKSERLESNVYVSTALVDMYA 461

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KCG I +AR++FD M  KNV TW +MI GYG +G+  +AL+LF  M +  + P  VTFL 
Sbjct: 462 KCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLS 521

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            L AC H+GLV +G EIF SM  +Y  +P  EHYACMVD+LGRAG L  AL+F+  MP +
Sbjct: 522 ILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLE 581

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
           P   VW ALL +C +H + EMAN+A+  +F+L+  +  G YV LSN  +    +     +
Sbjct: 582 PGPAVWGALLGACMIHKNTEMANVASKRLFQLDP-ENVGYYVLLSNIYSTDRNFPKAASV 640

Query: 476 REKMKLRGVLKDTGCSWV 493
           R+ +K R + K  GC+ +
Sbjct: 641 RQVVKKRKLAKTPGCTLI 658



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 112/434 (25%), Positives = 203/434 (46%), Gaps = 43/434 (9%)

Query: 8   RSSVFSSTHNRHYT-LVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLK 66
           +SS+F  TH R  T L P N T+   +     L +                      G+ 
Sbjct: 94  KSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERV-------------------GVL 134

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +HAH    GV  N  +   ++ L+ K    + A ++FD +P+R    +N MI+G+ +N  
Sbjct: 135 LHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSY 194

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
            E+S+ +   ++  G   D  T + +L A    +        LG  +     K  + +D 
Sbjct: 195 FEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQE-----YRLGMGIQCLASKKGLHSDV 249

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
            + T L+  Y K GK+   RI+FD + + ++I   +MISG+      E A  +FR+ +  
Sbjct: 250 YVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLAS 309

Query: 247 DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG--------SALVDMYAKCG 298
              V ++ + G  I +      L++  +LI+N+    +K+G        +AL  +Y +  
Sbjct: 310 GQRVNSSTLVGL-IPVYLPFNHLQL-SRLIQNL---SLKIGIILQPSVSTALTTVYCRLN 364

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC-MMQECCVQPNYVTFLGAL 357
           ++  AR++FD   +K++ +W +MI GY +NG  ++A+ LF  MM +  + PN VT    L
Sbjct: 365 EVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ--LSPNPVTVTSIL 422

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           SAC   G +  G+ +   + +   ++  +     +VD+  + GS+ +A +    M +K N
Sbjct: 423 SACAQLGALSIGKWV-HGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDK-N 480

Query: 418 SDVWAALLSSCRLH 431
              W A+++   LH
Sbjct: 481 VVTWNAMITGYGLH 494



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 181/397 (45%), Gaps = 27/397 (6%)

Query: 44  TATSLPSALQHYI----NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYA 99
           TATS     + ++    N+ T    L+I A +   G+  + +   KL       GA+ + 
Sbjct: 6   TATSAIRGQRFFLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHV 65

Query: 100 GQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVS-SGERPDGYTFSMILKASTC 158
            Q+F+++ +  L  +N +I G+  NG  + S+ L   L   +  RPD +T++  + A++ 
Sbjct: 66  RQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASR 125

Query: 159 CRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI 218
                     +G ++HA  +   V ++  + +A+VD Y K  +   AR VFD+M E++ +
Sbjct: 126 LED-----ERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTV 180

Query: 219 CSTSMISGFMSQGFVEDAEEIFRKTVEKDI--------VVYNAMIEGYSISIETARKALE 270
              +MISGF    + ED+  +F   ++  +         V  A+ E     ++  R  + 
Sbjct: 181 LWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAE-----LQEYRLGMG 235

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           + C   K     DV + + L+ +Y+KCGK    R +FD + Q ++ ++ +MI GY  N  
Sbjct: 236 IQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHE 295

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE-SMERDYSMKPKMEHY 389
              A+ LF  +     + N  T +G +        +   R I   S++    ++P +   
Sbjct: 296 TESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVS-- 353

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
             +  +  R   ++ A +   E PEK  +  W A++S
Sbjct: 354 TALTTVYCRLNEVQFARQLFDESPEKSLAS-WNAMIS 389


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  271 bits (693), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 162/438 (36%), Positives = 245/438 (55%), Gaps = 20/438 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+ I    +K G+  +  +   L+ L+ KCG       +FD++ Q  L +YN MI+GY  
Sbjct: 233 GMGIQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTF 292

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRN---LGRMVHAQILKC 180
           N + E +++L R+L++SG+R +  T   ++         V LP N   L R++    LK 
Sbjct: 293 NHETESAVTLFRELLASGQRVNSSTLVGLIP--------VYLPFNHLQLSRLIQNLSLKI 344

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
            +     + TAL   Y +  +  +AR +FD   EK++    +MISG+   G  + A  +F
Sbjct: 345 GIILQPSVSTALTTVYCRLNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLF 404

Query: 241 RKTVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFE-DVKLGSALVDMYA 295
           ++ + +  +  N +     +S      AL     VH  LIK+   E +V + +ALVDMYA
Sbjct: 405 QEMMPQ--LSPNPVTVTSILSACAQLGALSIGKWVH-GLIKSERLESNVYVSTALVDMYA 461

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KCG I +AR++FD M  KNV TW +MI GYG +G+  +AL+LF  M +  + P  VTFL 
Sbjct: 462 KCGSIVEARQLFDLMVDKNVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLS 521

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            L AC H+GLV +G EIF SM  +Y  +P  EHYACMVD+LGRAG L  AL+F+  MP +
Sbjct: 522 ILYACSHSGLVSEGNEIFHSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLE 581

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
           P   VW ALL +C +H + EMAN+A+  +F+L+  +  G YV LSN  +    +     +
Sbjct: 582 PGPAVWGALLGACMIHKNTEMANVASKRLFQLDP-ENVGYYVLLSNIYSTDRNFPKAASV 640

Query: 476 REKMKLRGVLKDTGCSWV 493
           R+ +K R + K  GC+ +
Sbjct: 641 RQVVKKRKLAKTPGCTLI 658



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 112/434 (25%), Positives = 203/434 (46%), Gaps = 43/434 (9%)

Query: 8   RSSVFSSTHNRHYT-LVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLK 66
           +SS+F  TH R  T L P N T+   +     L +                      G+ 
Sbjct: 94  KSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERV-------------------GVL 134

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +HAH    GV  N  +   ++ L+ K    + A ++FD +P+R    +N MI+G+ +N  
Sbjct: 135 LHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSY 194

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
            E+S+ +   ++  G   D  T + +L A    +        LG  +     K  + +D 
Sbjct: 195 FEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQE-----YRLGMGIQCLASKKGLHSDV 249

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
            + T L+  Y K GK+   RI+FD + + ++I   +MISG+      E A  +FR+ +  
Sbjct: 250 YVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLAS 309

Query: 247 DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG--------SALVDMYAKCG 298
              V ++ + G  I +      L++  +LI+N+    +K+G        +AL  +Y +  
Sbjct: 310 GQRVNSSTLVGL-IPVYLPFNHLQL-SRLIQNL---SLKIGIILQPSVSTALTTVYCRLN 364

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC-MMQECCVQPNYVTFLGAL 357
           ++  AR++FD   +K++ +W +MI GY +NG  ++A+ LF  MM +  + PN VT    L
Sbjct: 365 EVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ--LSPNPVTVTSIL 422

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           SAC   G +  G+ +   + +   ++  +     +VD+  + GS+ +A +    M +K N
Sbjct: 423 SACAQLGALSIGKWV-HGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDK-N 480

Query: 418 SDVWAALLSSCRLH 431
              W A+++   LH
Sbjct: 481 VVTWNAMITGYGLH 494



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 96/397 (24%), Positives = 181/397 (45%), Gaps = 27/397 (6%)

Query: 44  TATSLPSALQHYI----NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYA 99
           TATS     + ++    N+ T    L+I A +   G+  + +   KL       GA+ + 
Sbjct: 6   TATSAIRGQRFFLTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHV 65

Query: 100 GQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL-VSSGERPDGYTFSMILKASTC 158
            Q+F+++ +  L  +N +I G+  NG  + S+ L   L   +  RPD +T++  + A++ 
Sbjct: 66  RQLFNKVSKPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASR 125

Query: 159 CRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI 218
                     +G ++HA  +   V ++  + +A+VD Y K  +   AR VFD+M E++ +
Sbjct: 126 LED-----ERVGVLLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTV 180

Query: 219 CSTSMISGFMSQGFVEDAEEIFRKTVEKDI--------VVYNAMIEGYSISIETARKALE 270
              +MISGF    + ED+  +F   ++  +         V  A+ E     ++  R  + 
Sbjct: 181 LWNTMISGFSRNSYFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAE-----LQEYRLGMG 235

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           + C   K     DV + + L+ +Y+KCGK    R +FD + Q ++ ++ +MI GY  N  
Sbjct: 236 IQCLASKKGLHSDVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHE 295

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE-SMERDYSMKPKMEHY 389
              A+ LF  +     + N  T +G +        +   R I   S++    ++P +   
Sbjct: 296 TESAVTLFRELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVS-- 353

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
             +  +  R   ++ A +   E PEK  +  W A++S
Sbjct: 354 TALTTVYCRLNEVQFARQLFDESPEKSLAS-WNAMIS 389


>gi|225434871|ref|XP_002280683.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g59600-like [Vitis vinifera]
          Length = 545

 Score =  271 bits (693), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 164/523 (31%), Positives = 263/523 (50%), Gaps = 79/523 (15%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           ++ +   A+  Y      + G  +HAH+   G+   T  + KL+  + +CG L  A ++F
Sbjct: 26  SSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLF 85

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           D++P   +  +  +     + G  EE+LS   ++   G RP+ +    ILKA  C   + 
Sbjct: 86  DKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKA--CGHLS- 142

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
              R  G  +H  ILK   ++D  + +AL+  Y K G    A  VFD +++K+++   +M
Sbjct: 143 --DRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAM 200

Query: 224 ISGFMSQGFVEDA-----------------------------------EEIFR----KTV 244
           +SG+   GFV +A                                    E+FR      V
Sbjct: 201 VSGYAQHGFVHEALNLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGV 260

Query: 245 EKDIVVYNAMIEGY------------------------SISIETA----------RKALE 270
           E D+V + ++I G+                        S++I +           R   E
Sbjct: 261 EPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKE 320

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           +H   +     +DV + SALVDMYAKCG I +A+ +F  M ++N  TW S+I GY  +G 
Sbjct: 321 IHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGY 380

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
            N+A+ELF  M+E   + +++TF   L+AC HAG+V+ G  +F  M+  Y ++P++EHYA
Sbjct: 381 CNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQEKYRIEPRLEHYA 440

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
           CMVDLLGRAG L +A   +  MP +P+  VW ALL +CR H ++E+A +AA  +F+L   
Sbjct: 441 CMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEP- 499

Query: 451 DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           + PG+ + LSN  A AG+W +  ++++ MK R   K  GCSW+
Sbjct: 500 ESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWI 542


>gi|357151860|ref|XP_003575929.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14820-like, partial [Brachypodium
           distachyon]
          Length = 498

 Score =  271 bits (693), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 156/462 (33%), Positives = 247/462 (53%), Gaps = 44/462 (9%)

Query: 68  HAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV 127
           H    + G   +  +   L+  +  C  +  A ++FD +P+R L A+  M+  Y      
Sbjct: 16  HGIAVRVGADEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSYFNTQNY 75

Query: 128 EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL--GRMVHAQILKCDVKAD 185
            E+L L+ K+  S   PD    + +L  STC  +     R+L  G+ +H+ I   D+  D
Sbjct: 76  RETLLLLNKMKRSRVVPDQVILATVL--STCGHT-----RHLRSGKTIHSYIQVSDIFVD 128

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             L +AL++ Y        A  ++  M  K+++ ST+M+ G+   G +E A  IF    E
Sbjct: 129 ARLSSALINMYASCMDMEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAE 188

Query: 246 KDIVVYNAMIEGYS----------------------------------ISIETARKALEV 271
           KD+V ++AMI  Y+                                   +I +  KA  +
Sbjct: 189 KDVVSWSAMISAYAENNQPSEVLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKARWI 248

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
           H  +  + F++ + + +AL+DM++KCG +  A  +F+ M +KNV TWTSMI  +  +G+ 
Sbjct: 249 HSIVGNHGFYKILSICNALIDMFSKCGSLTLALNMFNAMPRKNVITWTSMIAAFAMHGDG 308

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC 391
             AL LF  M+   V+PN VTFL  L AC HAGLV +GR +FE M ++Y ++PK EHY C
Sbjct: 309 PSALTLFGQMKGEGVEPNGVTFLVLLYACCHAGLVYEGRSLFECMLQEYRIEPKHEHYGC 368

Query: 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451
           MVDL+GRA  +++A+  +  M  +PN  +W +LL++C +H D+E+   AA +I +L+ N 
Sbjct: 369 MVDLMGRAKLMQEAVDLIESMHIRPNVAIWGSLLAACWMHGDIELGEFAAKKILELDPN- 427

Query: 452 RPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             GAYV LSN  A +G W++  +LR  MK+ GV K+TG SW+
Sbjct: 428 HDGAYVLLSNIHAKSGNWNNAQKLRVMMKVHGVSKETGYSWL 469



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 143/300 (47%), Gaps = 42/300 (14%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI-SGFMS 229
           R  H   ++     D  + TALV +Y    + + AR VFD M E++++    M+ S F +
Sbjct: 13  RGTHGIAVRVGADEDGFVGTALVGAYAACQRVAEARRVFDGMPERDLVAWGVMLDSYFNT 72

Query: 230 QGFVED---AEEIFRKTVEKDIVVYNAMIE--GYSISIETARKALEVHCQLIKNVFFEDV 284
           Q + E      ++ R  V  D V+   ++   G++  + + +    +H  +  +  F D 
Sbjct: 73  QNYRETLLLLNKMKRSRVVPDQVILATVLSTCGHTRHLRSGKT---IHSYIQVSDIFVDA 129

Query: 285 KLGSALVDMYAKC-------------------------------GKIDDARRVFDHMQQK 313
           +L SAL++MYA C                               GKI+ AR +F+HM +K
Sbjct: 130 RLSSALINMYASCMDMEMADKIYSGMQRKDLVSSTAMVCGYAKNGKIEIARSIFNHMAEK 189

Query: 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF 373
           +V +W++MI  Y +N  P++ L LF  MQ C V P+ +T L  +SAC + G +DK R I 
Sbjct: 190 DVVSWSAMISAYAENNQPSEVLNLFNKMQGCGVSPDEITMLSVISACANIGSLDKARWI- 248

Query: 374 ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDD 433
            S+  ++     +     ++D+  + GSL  AL     MP K N   W +++++  +H D
Sbjct: 249 HSIVGNHGFYKILSICNALIDMFSKCGSLTLALNMFNAMPRK-NVITWTSMIAAFAMHGD 307



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/218 (23%), Positives = 98/218 (44%), Gaps = 10/218 (4%)

Query: 32  KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHL 91
           K+Q      + +T  S+ SA  +  + D   +   IH+ +   G     +I   L+ +  
Sbjct: 216 KMQGCGVSPDEITMLSVISACANIGSLDKARW---IHSIVGNHGFYKILSICNALIDMFS 272

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           KCG+L  A  MF+ +P++ +  +  MIA +  +G    +L+L  ++   G  P+G TF +
Sbjct: 273 KCGSLTLALNMFNAMPRKNVITWTSMIAAFAMHGDGPSALTLFGQMKGEGVEPNGVTFLV 332

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILK-CDVKADDVLYTALVDSYVKGGKTSYA-RIVF 209
           +L A  CC + +      GR +   +L+   ++     Y  +VD   +      A  ++ 
Sbjct: 333 LLYA--CCHAGLVYE---GRSLFECMLQEYRIEPKHEHYGCMVDLMGRAKLMQEAVDLIE 387

Query: 210 DMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKD 247
            M +  NV    S+++     G +E  E   +K +E D
Sbjct: 388 SMHIRPNVAIWGSLLAACWMHGDIELGEFAAKKILELD 425


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  271 bits (693), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 155/438 (35%), Positives = 250/438 (57%), Gaps = 17/438 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCG---ALKYAGQMFDELPQRTLSAYNYMIAG 120
           GL++H+   + G   +  +S  L+ ++ K     A+ YA ++F+ + +  + ++  +I+G
Sbjct: 273 GLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFERMRKNDVISWTALISG 332

Query: 121 YLKNG-QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           Y+++G Q  + + L  ++++   +P+  T+S ILKA     +N+    + GR VHA ++K
Sbjct: 333 YVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKAC----ANIS-DHDSGRQVHAHVIK 387

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
            +  A   +  ALV  Y + G    AR VF+ + E+      SMIS             I
Sbjct: 388 SNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYER------SMISCITEGRDAPLDHRI 441

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            R  +      + ++I   + S+    K  ++H   +K  F  D  + ++LV MY++CG 
Sbjct: 442 GRMDMGISSSTFASLISA-AASVGMLTKGQQLHAMTLKAGFGSDRFVSNSLVSMYSRCGY 500

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ++DA R F+ ++ +NV +WTSMI G  K+G   +AL LF  M    V+PN VT++  LSA
Sbjct: 501 LEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVKPNDVTYIAVLSA 560

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H GLV +G+E F SM+RD+ + P+MEHYACMVDLL R+G +++AL+F+ EMP K ++ 
Sbjct: 561 CSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALEFINEMPLKADAL 620

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW  LL +CR HD++E+  IAA  + +L   D P  YV LSN  A AG WD V  +R  M
Sbjct: 621 VWKTLLGACRSHDNIEVGEIAAKNVIELEPRD-PAPYVLLSNLYADAGLWDEVARIRSAM 679

Query: 480 KLRGVLKDTGCSWVGTES 497
           +   + K+TG SW+  E+
Sbjct: 680 RDNNLNKETGLSWMEVEN 697



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 96/348 (27%), Positives = 173/348 (49%), Gaps = 24/348 (6%)

Query: 82  ISIKLLILHLKCGALKYAGQMFDELPQ-RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSS 140
           ++  LL L+ +CGA+  A  +FD +   R + ++  M +   +NG   ESL L+ +++ S
Sbjct: 86  VANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLIGEMLES 145

Query: 141 GERPDGYTFSMILKASTCCRSNVPLPRNL----GRMVHAQILKCDVKADDV-LYTALVDS 195
           G  P+ YT         C  ++   P  L    G +V   + K  +   D+ + +AL+D 
Sbjct: 146 GLLPNAYTL--------CAVAHACFPHELYCLVGGVVLGLVHKMGLWGTDIAVGSALIDM 197

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVY 251
             + G  + AR VFD ++EK V+  T +IS ++     E+A EIF        E D    
Sbjct: 198 LARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTM 257

Query: 252 NAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG---KIDDARRVFD 308
           ++MI   +  + + R  L++H   ++  F  D  +   LVDMYAK      +D A +VF+
Sbjct: 258 SSMISACT-ELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYAKSNIEQAMDYANKVFE 316

Query: 309 HMQQKNVFTWTSMIDGYGKNG-NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367
            M++ +V +WT++I GY ++G   N+ + LF  M    ++PN++T+   L AC +    D
Sbjct: 317 RMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHD 376

Query: 368 KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            GR++   + +           A +V +   +G +E+A +   ++ E+
Sbjct: 377 SGRQVHAHVIKSNQAAAHTVGNA-LVSMYAESGCMEEARRVFNQLYER 423



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 176/368 (47%), Gaps = 28/368 (7%)

Query: 80  TNISI--KLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL 137
           T+I++   L+ +  + G L  A ++FD L ++T+  +  +I+ Y++    EE++ +    
Sbjct: 186 TDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDF 245

Query: 138 VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYV 197
           +  G  PD YT S ++ A T   S       LG  +H+  L+    +D  +   LVD Y 
Sbjct: 246 LEDGFEPDRYTMSSMISACTELGS-----VRLGLQLHSLALRMGFASDACVSCGLVDMYA 300

Query: 198 KGG---KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA-----EEIFRKTVEKDIV 249
           K        YA  VF+ M + +VI  T++ISG++  G  E+       E+  ++++ + +
Sbjct: 301 KSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHI 360

Query: 250 VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309
            Y+++++  + +I       +VH  +IK+       +G+ALV MYA+ G +++ARRVF+ 
Sbjct: 361 TYSSILKACA-NISDHDSGRQVHAHVIKSNQAAAHTVGNALVSMYAESGCMEEARRVFNQ 419

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKG 369
           + ++++ +  +     G++   +  +    M        +  TF   +SA    G++ KG
Sbjct: 420 LYERSMISCIT----EGRDAPLDHRIGRMDM------GISSSTFASLISAAASVGMLTKG 469

Query: 370 REIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCR 429
           +++  +M               +V +  R G LE A +   E+ ++ N   W +++S   
Sbjct: 470 QQL-HAMTLKAGFGSDRFVSNSLVSMYSRCGYLEDACRSFNELKDR-NVISWTSMISGLA 527

Query: 430 LHDDVEMA 437
            H   E A
Sbjct: 528 KHGYAERA 535



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 72/277 (25%), Positives = 134/277 (48%), Gaps = 30/277 (10%)

Query: 169 LGRMVHAQILKCDV-KADDVLYTALVDSYVKGGKTSYARIVFDMMLE-KNVICSTSMISG 226
           LGR +H ++L+ D+   D V+  +L+  Y + G  + AR VFD M   ++++  T+M S 
Sbjct: 66  LGRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASC 125

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI-SIETARKALEVHCQLIK-------- 277
               G   ++  +  + +E  +     +   Y++ ++  A    E++C +          
Sbjct: 126 LARNGAERESLLLIGEMLESGL-----LPNAYTLCAVAHACFPHELYCLVGGVVLGLVHK 180

Query: 278 -NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
             ++  D+ +GSAL+DM A+ G +  AR+VFD + +K V  WT +I  Y +     +A+E
Sbjct: 181 MGLWGTDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVE 240

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC----M 392
           +F    E   +P+  T    +SAC   G V  G ++        +++      AC    +
Sbjct: 241 IFLDFLEDGFEPDRYTMSSMISACTELGSVRLGLQL-----HSLALRMGFASDACVSCGL 295

Query: 393 VDLLGRAGSLEQALKF---VLEMPEKPNSDVWAALLS 426
           VD+  ++ ++EQA+ +   V E   K +   W AL+S
Sbjct: 296 VDMYAKS-NIEQAMDYANKVFERMRKNDVISWTALIS 331


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  271 bits (693), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 150/435 (34%), Positives = 243/435 (55%), Gaps = 14/435 (3%)

Query: 64   GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
            G  +H    K         +  LL ++ KCG L  A Q F+++ Q+T+ ++  +IA Y++
Sbjct: 673  GRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVR 732

Query: 124  NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
             G  ++++ L  ++ S G  PD Y+ + +L A  C  S      + GR VH  I K ++ 
Sbjct: 733  EGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNS-----LDKGRDVHNYIRKNNMA 787

Query: 184  ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
                +  AL+D Y K G    A +VF  +  K+++   +MI G+       +A ++F   
Sbjct: 788  LCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEM 847

Query: 241  RKTVEKDIVVYNAMIE--GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
            +K    D +    ++   G   ++E  R    +H  +++N +  ++ + +AL+DMY KCG
Sbjct: 848  QKESRPDGITMACLLPACGSLAALEIGRG---IHGCILRNGYSSELHVANALIDMYVKCG 904

Query: 299  KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
             +  AR +FD + +K++ TWT MI G G +G  N+A+  F  M+   ++P+ +TF   L 
Sbjct: 905  SLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILY 964

Query: 359  ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
            AC H+GL+++G   F SM  + +M+PK+EHYACMVDLL R G+L +A   +  MP KP++
Sbjct: 965  ACSHSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDA 1024

Query: 419  DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
             +W ALL  CR+H DVE+A   A  +F+L   D  G YV L+N  A A KW+ V +LRE+
Sbjct: 1025 TIWGALLCGCRIHHDVELAEKVAEHVFELEP-DNAGYYVLLANIYAEAEKWEEVKKLRER 1083

Query: 479  MKLRGVLKDTGCSWV 493
            +  RG+ K  GCSW+
Sbjct: 1084 IGKRGLKKSPGCSWI 1098



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 105/364 (28%), Positives = 183/364 (50%), Gaps = 26/364 (7%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE-LPQRTLSAYNYMIAGYL 122
           G  +H+ I+  G+     +  KL+ +++ CGAL+   ++FD  L    +  +N M++ Y 
Sbjct: 470 GKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYA 529

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRM-----VHAQI 177
           K G   ES+ L +K+   G   + YTFS ILK              LGR+     +H  +
Sbjct: 530 KIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFA----------TLGRVGECKRIHGCV 579

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
            K    + + +  +L+ +Y K G+   A  +FD + +++V+   SMISG +  GF   A 
Sbjct: 580 YKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSAL 639

Query: 238 EIF------RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALV 291
           E F      R  V+   +V N++    ++   +  +AL  H Q +K  F  +V   + L+
Sbjct: 640 EFFVQMLILRVGVDLATLV-NSVAACANVGSLSLGRAL--HGQGVKACFSREVMFNNTLL 696

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
           DMY+KCG ++DA + F+ M QK V +WTS+I  Y + G  + A+ LF  M+   V P+  
Sbjct: 697 DMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVY 756

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
           +    L AC     +DKGR++   + ++ +M   +     ++D+  + GS+E+A     +
Sbjct: 757 SMTSVLHACACGNSLDKGRDVHNYIRKN-NMALCLPVSNALMDMYAKCGSMEEAYLVFSQ 815

Query: 412 MPEK 415
           +P K
Sbjct: 816 IPVK 819



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 188/371 (50%), Gaps = 15/371 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IH  + K G      +   L+  + K G +  A ++FDEL  R + ++N MI+G + NG
Sbjct: 574 RIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNG 633

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
               +L    +++       G   + ++ +   C +   L  +LGR +H Q +K     +
Sbjct: 634 FSHSALEFFVQMLI---LRVGVDLATLVNSVAACANVGSL--SLGRALHGQGVKACFSRE 688

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----R 241
            +    L+D Y K G  + A   F+ M +K V+  TS+I+ ++ +G  +DA  +F     
Sbjct: 689 VMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMES 748

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
           K V  D+    +++   +    +  K  +VH  + KN     + + +AL+DMYAKCG ++
Sbjct: 749 KGVSPDVYSMTSVLHACACG-NSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSME 807

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           +A  VF  +  K++ +W +MI GY KN  PN+AL+LF  MQ+   +P+ +T    L ACG
Sbjct: 808 EAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQK-ESRPDGITMACLLPACG 866

Query: 362 HAGLVDKGREIFESMERD-YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
               ++ GR I   + R+ YS +  + +   ++D+  + GSL  A + + +M  + +   
Sbjct: 867 SLAALEIGRGIHGCILRNGYSSELHVAN--ALIDMYVKCGSLVHA-RLLFDMIPEKDLIT 923

Query: 421 WAALLSSCRLH 431
           W  ++S C +H
Sbjct: 924 WTVMISGCGMH 934



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/319 (23%), Positives = 151/319 (47%), Gaps = 17/319 (5%)

Query: 115 NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH 174
           N  I  + + G +  ++ L+R  +S     D   +S IL+    C  +  L    G+MVH
Sbjct: 422 NTKICKFCEVGDLRNAVELLR--MSQKSELDLNAYSSILQL---CAEHKCLQE--GKMVH 474

Query: 175 AQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN-VICSTSMISGFMSQGFV 233
           + I    +  + VL   LV  YV  G     R +FD +L  N V     M+S +   G  
Sbjct: 475 SVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDY 534

Query: 234 EDAEEIFRKTVEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSA 289
            ++  +F+K  +  I      ++ +++ ++ ++    +   +H  + K  F     + ++
Sbjct: 535 RESIYLFKKMQKLGITGNSYTFSCILKCFA-TLGRVGECKRIHGCVYKLGFGSYNTVVNS 593

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349
           L+  Y K G++D A ++FD +  ++V +W SMI G   NG  + ALE F  M    V  +
Sbjct: 594 LIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVD 653

Query: 350 YVTFLGALSACGHAGLVDKGREIF-ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKF 408
             T + +++AC + G +  GR +  + ++  +S +    +   ++D+  + G+L  A++ 
Sbjct: 654 LATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNT--LLDMYSKCGNLNDAIQA 711

Query: 409 VLEMPEKPNSDVWAALLSS 427
             +M +K     W +L+++
Sbjct: 712 FEKMGQKTVVS-WTSLIAA 729


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  271 bits (693), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 147/434 (33%), Positives = 237/434 (54%), Gaps = 10/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H+   K            LL ++ KCG L  A  +F E+  R++ +Y  MIAGY +
Sbjct: 164 GRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAR 223

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G   E++ L  ++   G  PD YT + +L    CC     L    G+ VH  I + D+ 
Sbjct: 224 EGLAGEAVKLFEEMEEEGISPDVYTVTAVL---NCCARYRLLDE--GKRVHEWIKENDLG 278

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +  AL+D Y K G    A +VF  M  K++I   ++I G+    +  +A  +F   
Sbjct: 279 FDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLL 338

Query: 244 VEKDIVVYN----AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           +E+     +    A +     S+    K  E+H  +++N +F D  + ++LVDMYAKCG 
Sbjct: 339 LEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGA 398

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +  A  +FD +  K++ +WT MI GYG +G   +A+ LF  M++  ++ + ++F+  L A
Sbjct: 399 LLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYA 458

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H+GLVD+G   F  M  +  ++P +EHYAC+VD+L R G L +A +F+  MP  P++ 
Sbjct: 459 CSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDAT 518

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +W ALL  CR+H DV++A   A ++F+L   +  G YV ++N  A A KW+ V  LR+++
Sbjct: 519 IWGALLCGCRIHHDVKLAEKVAEKVFELEPEN-TGYYVLMANIYAEAEKWEQVKRLRKRI 577

Query: 480 KLRGVLKDTGCSWV 493
             RG+ K+ GCSW+
Sbjct: 578 GQRGLRKNPGCSWI 591



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 116/400 (29%), Positives = 198/400 (49%), Gaps = 31/400 (7%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H  I K+G     ++   L+  +LK   +  A ++FDE+ +R + ++N +I GY+ 
Sbjct: 63  GEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVS 122

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  E+ LS+  +++ SG   D  T   +   + C  S +    +LGR VH+  +K    
Sbjct: 123 NGLAEKGLSVFVQMLVSGIEIDLATIVSVF--AGCADSRLI---SLGRAVHSIGVKACFS 177

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +D     L+D Y K G    A+ VF  M +++V+  TSMI+G+  +G   +A ++F + 
Sbjct: 178 REDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEM 237

Query: 244 VEK----DIVVYNAMIE---GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
            E+    D+    A++     Y +  E  R    VH  + +N    D+ + +AL+DMYAK
Sbjct: 238 EEEGISPDVYTVTAVLNCCARYRLLDEGKR----VHEWIKENDLGFDIFVSNALMDMYAK 293

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF-CMMQECCVQPNYVTFLG 355
           CG + +A  VF  M+ K++ +W ++I GY KN   N+AL LF  +++E    P+  T   
Sbjct: 294 CGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVAC 353

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA-CMVDLLGRAGSLEQALKFVLEMPE 414
            L AC      DKGREI   + R+     +  H A  +VD+  + G+L  A     ++  
Sbjct: 354 VLPACASLSAFDKGREIHGYIMRNGYFSDR--HVANSLVDMYAKCGALLLAHMLFDDIAS 411

Query: 415 KPNSDVWAALLSSCRLH----------DDVEMANIAANEI 444
           K     W  +++   +H          + +  A I A+EI
Sbjct: 412 KDLVS-WTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEI 450



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/320 (30%), Positives = 163/320 (50%), Gaps = 17/320 (5%)

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           FDE+       +N ++    K+G    S+ L +K++SSG   D YTFS + K+ +  RS 
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRS- 59

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
                + G  +H  ILK      + +  +LV  Y+K  +   AR VFD M E++VI   S
Sbjct: 60  ----VHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNS 115

Query: 223 MISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSIS--IETARKALEVHCQLI 276
           +I+G++S G  E    +F +     +E D+    ++  G + S  I   R    VH   +
Sbjct: 116 IINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRA---VHSIGV 172

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           K  F  + +  + L+DMY+KCG +D A+ VF  M  ++V ++TSMI GY + G   +A++
Sbjct: 173 KACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVK 232

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVDL 395
           LF  M+E  + P+  T    L+ C    L+D+G+ + E + E D      + +   ++D+
Sbjct: 233 LFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSN--ALMDM 290

Query: 396 LGRAGSLEQALKFVLEMPEK 415
             + GS+++A     EM  K
Sbjct: 291 YAKCGSMQEAELVFSEMRVK 310


>gi|115462159|ref|NP_001054679.1| Os05g0153400 [Oryza sativa Japonica Group]
 gi|52353594|gb|AAU44160.1| unknown protein [Oryza sativa Japonica Group]
 gi|54287570|gb|AAV31314.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578230|dbj|BAF16593.1| Os05g0153400 [Oryza sativa Japonica Group]
 gi|215766042|dbj|BAG98270.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218196115|gb|EEC78542.1| hypothetical protein OsI_18502 [Oryza sativa Indica Group]
 gi|222630240|gb|EEE62372.1| hypothetical protein OsJ_17161 [Oryza sativa Japonica Group]
          Length = 507

 Score =  271 bits (693), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 150/444 (33%), Positives = 251/444 (56%), Gaps = 16/444 (3%)

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           + ++A + K G+  +  ++  L  L L+CG   YA ++FDE+P R + ++  +I G+   
Sbjct: 38  MPLYAVLLKLGLSASAILATSLAHLALRCGLPGYARRVFDEMPHRDVVSWTSLITGHAHQ 97

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
           G  ++SL+L+R++V SG  P+GY+ S  L A   C    P     G+ +HA+++K  +  
Sbjct: 98  GLYQDSLALLRRMVISGVVPNGYSLSGALLA---CAGIGPGALAAGKEIHARVVKMSLHG 154

Query: 185 --DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             D V+   ++D Y + GK  YAR +F +ML ++++   SM++G +  G  E+A  +F  
Sbjct: 155 SVDAVVENGVLDMYTRCGKIDYARKLFGVMLVRDIVAWNSMMAGCLRSGQAEEALGLFSS 214

Query: 243 TVEKDIVVYNAMIEGYSISIETA------RKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
            V   +   +A    ++IS++        ++ ++ H ++I+  F  DV + ++LVDMYAK
Sbjct: 215 MVSSGV---DADGFSFAISVDACGELALLKQGMQAHARVIRGGFDSDVVVRNSLVDMYAK 271

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG +D A  VF      +   WT+MI  YGK G  + A+ +F  M +  ++ + V +L  
Sbjct: 272 CGCVDSAGLVFRDALSSDAVLWTTMISAYGKFGRVHDAICMFDRMSQLGIKRDGVAYLAV 331

Query: 357 LSACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
           LSAC H+GLV +G   F+ M     S+K + EHY CM DLL R+G LE+AL F+  MP +
Sbjct: 332 LSACSHSGLVKEGWNYFKLMFHGQNSVKMQPEHYGCMADLLCRSGYLEEALDFITNMPFE 391

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
            +   W+ALL+SCR+H + ++  +AA+ + +L+  +    +VALSN  A+   W     +
Sbjct: 392 SSIAAWSALLNSCRIHGNAKLGQLAASRLVQLDPENHSN-WVALSNVHASESDWHETWMI 450

Query: 476 REKMKLRGVLKDTGCSWVGTESGL 499
           RE M +  V K+ GCSWV    G+
Sbjct: 451 RESMSIECVKKEPGCSWVELHDGV 474


>gi|242076494|ref|XP_002448183.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
 gi|241939366|gb|EES12511.1| hypothetical protein SORBIDRAFT_06g022570 [Sorghum bicolor]
          Length = 549

 Score =  271 bits (693), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 158/477 (33%), Positives = 261/477 (54%), Gaps = 30/477 (6%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLK--CGALKYAG--- 100
            SLP+AL+          G  +HA   ++G   +   +  LL L+ K  C  L   G   
Sbjct: 52  ASLPAALKSCAALGLSALGASLHALAIRSGAFADRFTANALLNLYCKLPCSYLHSTGVTS 111

Query: 101 --------------QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDG 146
                         ++FDE+ +R + ++N ++ G  + G+  E+L LVRK+   G RPD 
Sbjct: 112 VGGTGSSTALESVRKVFDEMIERDVVSWNTLVLGCAEEGRHHEALVLVRKMWREGFRPDS 171

Query: 147 YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR 206
           +T S +L     C ++V      G  VH   ++     D  + ++L+D Y    +T Y+ 
Sbjct: 172 FTLSSVLPIFAEC-ADV----KRGSEVHGFAVRNGFDNDVFVGSSLIDMYANCTRTDYSV 226

Query: 207 IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISI 262
            VFD +  ++ I   S+++G    G VE+A  IFR+ ++  +    V ++++I     ++
Sbjct: 227 KVFDNLPVRDPILWNSVLAGCAQNGSVEEALGIFRRMLQTGVRPVPVTFSSLIPVCG-NL 285

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
            + R   ++H  +I+  F ++V + S+L+DMY KCG+I  A  +FD M   +V +WT+MI
Sbjct: 286 ASLRFGKQLHAYVIRGGFEDNVFISSSLIDMYCKCGEISIAHHIFDRMCSPDVVSWTAMI 345

Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382
            GY  +G   +AL LF  M+    +PN++TFL  L+AC HAGLVDKG + F+SM   Y +
Sbjct: 346 MGYALHGPAREALVLFERMELGNAKPNHITFLAVLTACSHAGLVDKGWKYFKSMSDHYGI 405

Query: 383 KPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAAN 442
            P +EH A + D+LGRAG L++A  F+ +M  KP + VW+ LL +CR+H +  +A   A 
Sbjct: 406 VPTLEHCAALADILGRAGELDEAYNFISKMQIKPTASVWSTLLRACRVHKNTMLAEEVAK 465

Query: 443 EIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           +I +L      G++V LSN  +A+G+W+    LR+ M+ +G+ KD  CSW+  ++ L
Sbjct: 466 KIMELEPRS-IGSHVVLSNMYSASGRWNEAAHLRKSMRKKGMKKDPACSWIEVKNKL 521


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 149/434 (34%), Positives = 248/434 (57%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH +  + G +   N+S  L+ ++ KCG++  A  +FD +  +T+ ++N MI GY++
Sbjct: 295 GRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQ 354

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG    ++ + +K++         T   ++ A   C     + +  GR VH  + + ++ 
Sbjct: 355 NGDPGAAMEIFQKMMDEQVEMTNVT---VMGALHACADLGDVEQ--GRFVHKLLDQLELG 409

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK- 242
           +D  +  +L+  Y K  +   A  +F+ +  K ++   +MI G+   G + +A + F K 
Sbjct: 410 SDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKM 469

Query: 243 ---TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               ++ D     ++I   +  +    +A  +H  +I+    ++V + +ALVDMYAKCG 
Sbjct: 470 QLQNIKPDSFTMVSVIPALA-ELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGA 528

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +  AR++FD M +++V TW +MIDGYG +G    ALELF  M++  ++PN VTFL  LSA
Sbjct: 529 VHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSA 588

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H+GLV++G + F SM++DY ++P M+HY  MVDLLGRA  L +A  F+ +MP +P   
Sbjct: 589 CSHSGLVEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAIS 648

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           V+ A+L +CR+H +VE+   AAN IF L+ +D  G +V L+N  A A  WD V  +R  M
Sbjct: 649 VFGAMLGACRIHKNVELGEKAANRIFDLDPDD-GGYHVLLANIYATASMWDKVARVRTTM 707

Query: 480 KLRGVLKDTGCSWV 493
           + +G+ K  G S V
Sbjct: 708 EKKGIQKTPGWSVV 721



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 104/371 (28%), Positives = 188/371 (50%), Gaps = 10/371 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH  +   G   N      ++ ++ KC  ++ A +MFD +P+R L  +N +I+GY +
Sbjct: 194 GKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQ 253

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  + +L LV ++   G+RPD  T   IL A     S       +GR +H   ++   +
Sbjct: 254 NGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGS-----LRIGRSIHGYSMRAGFE 308

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +   + TALVD Y K G    AR++FD M  K V+   SMI G++  G    A EIF+K 
Sbjct: 309 SFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKM 368

Query: 244 VEKDIVVYNAMIEG---YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           +++ + + N  + G       +    +   VH  L +     DV + ++L+ MY+KC ++
Sbjct: 369 MDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELGSDVSVMNSLISMYSKCKRV 428

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           D A  +F+++Q K + +W +MI GY +NG  N+A++ FC MQ   ++P+  T +  + A 
Sbjct: 429 DIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPAL 488

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
               ++ + + I   + R   +   +     +VD+  + G++  A K + +M ++ +   
Sbjct: 489 AELSVLPQAKWIHGLVIRT-CLDKNVFVATALVDMYAKCGAVHTARK-LFDMMDERHVTT 546

Query: 421 WAALLSSCRLH 431
           W A++     H
Sbjct: 547 WNAMIDGYGTH 557



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 95/312 (30%), Positives = 165/312 (52%), Gaps = 10/312 (3%)

Query: 71  ITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEES 130
           I K G+        KL+ L  K G+L  A ++F  +  +    Y+ M+ GY +N  ++++
Sbjct: 100 IIKNGLYSEHLFQTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDA 159

Query: 131 LSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT 190
           +S   ++   G RP  Y F+ +LK    C  N  L +  G+ +H Q++     ++    T
Sbjct: 160 VSFFCRMRYDGVRPVVYNFTYLLKV---CGDNADLRK--GKEIHCQLIVNGFASNVFAMT 214

Query: 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK---- 246
            +V+ Y K      A  +FD M E++++C  ++ISG+   GF + A E+  +  E+    
Sbjct: 215 GVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRP 274

Query: 247 DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRV 306
           D +   +++   +  + + R    +H   ++  F   V + +ALVDMY+KCG +  AR +
Sbjct: 275 DSITIVSILPAVA-DVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVGTARLI 333

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           FD M  K V +W SMIDGY +NG+P  A+E+F  M +  V+   VT +GAL AC   G V
Sbjct: 334 FDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDV 393

Query: 367 DKGREIFESMER 378
           ++GR + + +++
Sbjct: 394 EQGRFVHKLLDQ 405


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 158/436 (36%), Positives = 248/436 (56%), Gaps = 14/436 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H  I + G + +  +   LL  ++ CG +  A Q+FDE   + +  +N +I GY +
Sbjct: 124 GKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYAR 183

Query: 124 NGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            G V +S  + +++V   E RP+  T   ++ A  C  S       LGR +H  ++K  V
Sbjct: 184 QGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVA--CIESK---NLKLGRAIHGYMMKDMV 238

Query: 183 KADDV-LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
             + V L  AL++ YVK G    AR +FD + EKN +   S+I G+   G + +  E+ R
Sbjct: 239 LREGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLR 298

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFEDVKLGSALVDMYAKC 297
           +    ++      + G  +S      A      VH +  +     DV +G+AL+DMYAKC
Sbjct: 299 EMHLSNLKPDRFTVSGV-LSACAQMGAFNLGNWVH-RFAEKKGIWDVFIGTALIDMYAKC 356

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G I  AR+VFD M ++NV TW +++ GY  +G    A+ELF  M+E   +P+ +TFL  L
Sbjct: 357 GFIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVL 416

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            AC H+GLV+ G++ F+ M + Y + P++EHY CMVDLLGRAG L++A + +  M  +PN
Sbjct: 417 HACAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPN 476

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
             VW ALLS+C +H ++E+   AA+ + KLNA D  G+YV L+N  A+A +++ V  +RE
Sbjct: 477 VVVWGALLSACSIHGNIEIGEWAAHHMIKLNAMD-GGSYVILANLYASAQRFNRVKAVRE 535

Query: 478 KMKLRGVLKDTGCSWV 493
            M  +G+ K  GCS +
Sbjct: 536 MMVEKGICKSHGCSMI 551



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 118/426 (27%), Positives = 207/426 (48%), Gaps = 15/426 (3%)

Query: 49  PSALQHYINSDTPFYGLK-IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP 107
           P ++   I + T    LK IHA    + +     I  K++   L    L YA Q+F++  
Sbjct: 6   PKSVLALIETCTNIQQLKQIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQVFNQTQ 65

Query: 108 QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLP 166
           +     YN MI  Y  +     ++S+  K+ +      D YT+  + KA   C S   + 
Sbjct: 66  EPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKA---CASQFAVE 122

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
           +  G+ VH  I++   + D  L ++L++ Y+  G+   A+ VFD    K+V+   ++I+G
Sbjct: 123 K--GKEVHGVIVRIGYELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITG 180

Query: 227 FMSQGFVEDAEEIFRKTVE-KDIVVYNAMIEGYSIS-IETARKAL--EVHCQLIKN-VFF 281
           +  QG V D+  +F++ VE K++      + G  ++ IE+    L   +H  ++K+ V  
Sbjct: 181 YARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLR 240

Query: 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM 341
           E VKL +AL+++Y KCG +D AR++FD + +KN   W S+I GY + G+ N+ +EL   M
Sbjct: 241 EGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREM 300

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGS 401
               ++P+  T  G LSAC   G  + G  +    E+       +     ++D+  + G 
Sbjct: 301 HLSNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIWDVFIG--TALIDMYAKCGF 358

Query: 402 LEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSN 461
           +  A K   +M E+ N   W A+LS    H   E A    +E+ +  A      ++A+ +
Sbjct: 359 IGAARKVFDQMNER-NVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLH 417

Query: 462 TLAAAG 467
             A +G
Sbjct: 418 ACAHSG 423


>gi|413943774|gb|AFW76423.1| hypothetical protein ZEAMMB73_944105 [Zea mays]
          Length = 446

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 152/398 (38%), Positives = 224/398 (56%), Gaps = 47/398 (11%)

Query: 137 LVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD-VLYTALVDS 195
           ++++G  PD  T S ++ A     + +   R  GR VHA ++K D   DD VL  ALVD 
Sbjct: 1   MMATGFFPDEVTLSSVMSAC----AGLAAERE-GRQVHAHMVKRDRLRDDMVLNNALVDM 55

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMI 255
           Y K G+T  AR +FD M  ++V+  TS+++G+     VEDA+ +F + VEK+++ +N +I
Sbjct: 56  YAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLI 115

Query: 256 EGYS----------ISIETARKAL------------------------EVHCQLIKNVF- 280
             Y+          + ++  R ++                        + H  ++K  F 
Sbjct: 116 AAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFR 175

Query: 281 FE-----DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
           F+     DV +G++LVDMY K G IDD  +VF+ M  ++  +W +MI GY +NG    AL
Sbjct: 176 FDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDAL 235

Query: 336 ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDL 395
            LF  M      P+ VT +G LSACGH+GLVD+GR  F  M  D+ + P  +HY CMVDL
Sbjct: 236 HLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDL 295

Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA 455
           LGRAG L++A + + +MP +P+S +WA+LL +CRLH +VE+    A  +F+L+  +  G 
Sbjct: 296 LGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAGRLFELDPEN-SGP 354

Query: 456 YVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           YV LSN  A  GKW  V  +R  MK RGV K  GCSW+
Sbjct: 355 YVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCSWI 392



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/334 (22%), Positives = 143/334 (42%), Gaps = 71/334 (21%)

Query: 64  GLKIHAHITKTG-VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLS---------- 112
           G ++HAH+ K   ++ +  ++  L+ ++ KCG    A  +FD +P R++           
Sbjct: 29  GRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYA 88

Query: 113 ---------------------AYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
                                A+N +IA Y +NG+ EE++ L  +L      P  YT+  
Sbjct: 89  KSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGN 148

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           +L A      N+ + + LG+  H  +LK   +                         FD 
Sbjct: 149 VLNAC----GNIAVLQ-LGQQAHVHVLKEGFR-------------------------FDF 178

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV 271
             E +V    S++  ++  G ++D  ++F +   +D V +NAMI GY+ +   A+ AL +
Sbjct: 179 GPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQN-GRAKDALHL 237

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT-----WTSMIDGYG 326
             +++ +    D      ++      G +D+ RR F  M + +  T     +T M+D  G
Sbjct: 238 FERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHYTCMVDLLG 297

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           + G+  +A EL   +++   +P+ V +   L AC
Sbjct: 298 RAGHLKEAEEL---IKDMPTEPDSVLWASLLGAC 328



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 85/191 (44%), Gaps = 11/191 (5%)

Query: 64  GLKIHAHITKTGVK----PNTNISI--KLLILHLKCGALKYAGQMFDELPQRTLSAYNYM 117
           G + H H+ K G +    P +++ +   L+ ++LK G++    ++F+ +  R   ++N M
Sbjct: 162 GQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAM 221

Query: 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQI 177
           I GY +NG+ +++L L  +++ S E PD  T  MI   S C  S   L     R  H   
Sbjct: 222 IVGYAQNGRAKDALHLFERMLCSNENPDSVT--MIGVLSACGHSG--LVDEGRRHFHFMT 277

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
               +      YT +VD   + G    A  ++ DM  E + +   S++        VE  
Sbjct: 278 EDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELG 337

Query: 237 EEIFRKTVEKD 247
           E    +  E D
Sbjct: 338 ERTAGRLFELD 348


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 153/451 (33%), Positives = 260/451 (57%), Gaps = 11/451 (2%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +L SAL+          G ++H+ + K  ++ +  +S+ L+ ++ KC  L+ A   F+ L
Sbjct: 361 TLSSALKACAGMGLKELGRQLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLL 420

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P++ L A+N +I+GY +  +  E+LSL  ++   G   +  T S ILK++   +      
Sbjct: 421 PEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQV----- 475

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
            ++ R VH   +K    +D  +  +L+DSY K      A  +F+     +++  TSMI+ 
Sbjct: 476 VHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITA 535

Query: 227 FMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
           +   G  E+A ++F +     ++ D  V ++++   + ++    +  ++H  ++K  F  
Sbjct: 536 YAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACA-NLSAFEQGKQLHVHILKYGFVL 594

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           D+  G++LV+MYAKCG IDDA R F  + ++ + +W++MI G  ++G+  QAL+LF  M 
Sbjct: 595 DIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQML 654

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
           +  V PN++T +  L AC HAGLV + +  FESME  +  KP  EHYACM+DLLGRAG +
Sbjct: 655 KEGVSPNHITLVSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKI 714

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
            +A++ V +MP + N+ VW ALL + R+H DVE+   AA  +F L   ++ G +V L+N 
Sbjct: 715 NEAVELVNKMPFEANASVWGALLGAARIHKDVELGRRAAEMLFILEP-EKSGTHVLLANI 773

Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            A+AGKW++V E+R  M+   V K+ G SW+
Sbjct: 774 YASAGKWENVAEVRRLMRDSKVKKEPGMSWI 804



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/367 (28%), Positives = 189/367 (51%), Gaps = 12/367 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           GL+IHAHITK+G+  + +I   L+ L+ KC    YA ++ DE  +  L +++ +I+GY +
Sbjct: 75  GLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQ 134

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG    +L    ++   G + + +TFS +LKA +  +        +G+ VH  ++    +
Sbjct: 135 NGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKD-----LRIGKQVHGVVVVSGFE 189

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +   LV  Y K  +   ++ +FD + E+NV+   ++ S ++   F  +A  +F + 
Sbjct: 190 GDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEM 249

Query: 244 VEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           V   I       ++M+   +   +++R  + +H  LIK  +  D    +ALVDMYAK G 
Sbjct: 250 VLSGIKPNEFSLSSMVNACTGLRDSSRGKI-IHGYLIKLGYDWDPFSANALVDMYAKVGD 308

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           + DA  VF+ ++Q ++ +W ++I G   + +  QALEL   M+   + PN  T   AL A
Sbjct: 309 LADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKA 368

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C   GL + GR++  S+ +   M+  +     +VD+  +   LE A      +PEK +  
Sbjct: 369 CAGMGLKELGRQLHSSLMK-MDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEK-DLI 426

Query: 420 VWAALLS 426
            W A++S
Sbjct: 427 AWNAIIS 433



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 148/301 (49%), Gaps = 18/301 (5%)

Query: 144 PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTS 203
           P   ++S +L  S CC +    P   G  +HA I K  +  D  +   L++ Y K     
Sbjct: 54  PTSVSYSKLL--SQCCTTKSLRP---GLQIHAHITKSGLSDDPSIRNHLINLYSKCRNFG 108

Query: 204 YARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYS 259
           YAR + D   E +++  +++ISG+   G    A   F +     V+ +   ++++++  S
Sbjct: 109 YARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168

Query: 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWT 319
           I ++  R   +VH  ++ + F  DV + + LV MYAKC +  D++R+FD + ++NV +W 
Sbjct: 169 I-VKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWN 227

Query: 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR-EIFES--M 376
           ++   Y +     +A+ LF  M    ++PN  +    ++AC   GL D  R +I     +
Sbjct: 228 ALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNAC--TGLRDSSRGKIIHGYLI 285

Query: 377 ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEM 436
           +  Y   P   +   +VD+  + G L  A+  V E  ++P+   W A+++ C LH+  E 
Sbjct: 286 KLGYDWDPFSAN--ALVDMYAKVGDLADAIS-VFEKIKQPDIVSWNAVIAGCVLHEHHEQ 342

Query: 437 A 437
           A
Sbjct: 343 A 343


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 147/434 (33%), Positives = 237/434 (54%), Gaps = 10/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H+   K            LL ++ KCG L  A  +F E+  R++ +Y  MIAGY +
Sbjct: 315 GRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAR 374

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G   E++ L  ++   G  PD YT + +L    CC     L    G+ VH  I + D+ 
Sbjct: 375 EGLAGEAVKLFEEMEEEGISPDVYTVTAVL---NCCARYRLLDE--GKRVHEWIKENDLG 429

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +  AL+D Y K G    A +VF  M  K++I   ++I G+    +  +A  +F   
Sbjct: 430 FDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLL 489

Query: 244 VEKDIVVYN----AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           +E+     +    A +     S+    K  E+H  +++N +F D  + ++LVDMYAKCG 
Sbjct: 490 LEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGA 549

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +  A  +FD +  K++ +WT MI GYG +G   +A+ LF  M++  ++ + ++F+  L A
Sbjct: 550 LLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYA 609

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H+GLVD+G   F  M  +  ++P +EHYAC+VD+L R G L +A +F+  MP  P++ 
Sbjct: 610 CSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDAT 669

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +W ALL  CR+H DV++A   A ++F+L   +  G YV ++N  A A KW+ V  LR+++
Sbjct: 670 IWGALLCGCRIHHDVKLAEKVAEKVFELEPEN-TGYYVLMANIYAEAEKWEQVKRLRKRI 728

Query: 480 KLRGVLKDTGCSWV 493
             RG+ K+ GCSW+
Sbjct: 729 GQRGLRKNPGCSWI 742



 Score =  163 bits (412), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 113/376 (30%), Positives = 192/376 (51%), Gaps = 17/376 (4%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +L S LQ   +S +   G ++   I   G   ++N+  KL +++  CG LK A ++FDE+
Sbjct: 96  TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEV 155

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
                  +N ++    K+G    S+ L +K++SSG   D YTFS + K+ +  RS     
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRS----- 210

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
            + G  +H  ILK      + +  +LV  Y+K  +   AR VFD M E++VI   S+I+G
Sbjct: 211 VHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 270

Query: 227 FMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSIS--IETARKALEVHCQLIKNVF 280
           ++S G  E    +F +     +E D+    ++  G + S  I   R    VH   +K  F
Sbjct: 271 YVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRA---VHSIGVKACF 327

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             + +  + L+DMY+KCG +D A+ VF  M  ++V ++TSMI GY + G   +A++LF  
Sbjct: 328 SREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEE 387

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVDLLGRA 399
           M+E  + P+  T    L+ C    L+D+G+ + E + E D      + +   ++D+  + 
Sbjct: 388 MEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSN--ALMDMYAKC 445

Query: 400 GSLEQALKFVLEMPEK 415
           GS+++A     EM  K
Sbjct: 446 GSMQEAELVFSEMRVK 461



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/312 (22%), Positives = 139/312 (44%), Gaps = 13/312 (4%)

Query: 109 RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRN 168
           R+++  N  +  + ++G +E ++ L+   VS     D  T   +L+    C  +  L   
Sbjct: 59  RSVTDANTQLRRFCESGNLENAVKLL--CVSGKWDIDPRTLCSVLQL---CADSKSLKD- 112

Query: 169 LGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM 228
            G+ V   I       D  L + L   Y   G    A  VFD +  +  +    +++   
Sbjct: 113 -GKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELA 171

Query: 229 SQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDV 284
             G    +  +F+K     VE D   ++ + + +S S+ +     ++H  ++K+ F E  
Sbjct: 172 KSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFS-SLRSVHGGEQLHGFILKSGFGERN 230

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
            +G++LV  Y K  ++D AR+VFD M +++V +W S+I+GY  NG   + L +F  M   
Sbjct: 231 SVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVS 290

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQ 404
            ++ +  T +   + C  + L+  GR +  S+        +      ++D+  + G L+ 
Sbjct: 291 GIEIDLATIVSVFAGCADSRLISLGRAV-HSIGVKACFSREDRFCNTLLDMYSKCGDLDS 349

Query: 405 ALKFVLEMPEKP 416
           A     EM ++ 
Sbjct: 350 AKAVFREMSDRS 361


>gi|225450928|ref|XP_002280725.1| PREDICTED: pentatricopeptide repeat-containing protein At3g05340
           [Vitis vinifera]
          Length = 656

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 154/434 (35%), Positives = 241/434 (55%), Gaps = 11/434 (2%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           IH+ +   G +    +   L+  + +CG      ++FDE+ ++ +  +  +I+G L  GQ
Sbjct: 178 IHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISG-LSQGQ 236

Query: 127 V-EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             EESL L  K+      P+  T+   L +   C S +   R  GR +H  + K  V  D
Sbjct: 237 FYEESLKLFGKMRDGPVDPNSLTY---LSSLMAC-SGLQAIRE-GRQIHGLVWKLGVHFD 291

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             + +AL+D Y K G    A  +F+   E + +  T ++ G    GF E++ ++F K V+
Sbjct: 292 LCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVK 351

Query: 246 KDIVVYNAMIEGY--SISIETARK-ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
             +V+   MI        I+T+     ++H  +IK  F  +  + + L++MY+KCG +DD
Sbjct: 352 NGVVIDPNMISAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDD 411

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           + ++F  M Q+N  +W SMI  + ++GN ++AL+L+  M+   V P  VTFL  L AC H
Sbjct: 412 SIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAH 471

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
            GLV+KG    ESM +DY + P+MEHYAC+VD++GRAG L +A KF+  +PEKP   VW 
Sbjct: 472 VGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILVWQ 531

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
           ALL +C +H + EM   AAN++F L A + P  Y+ L+N  ++ GKW       +KMK  
Sbjct: 532 ALLGACSIHGNSEMGKYAANQLF-LQAPESPAPYILLANIYSSEGKWKERARTIKKMKDM 590

Query: 483 GVLKDTGCSWVGTE 496
           GV K+TG SW+  E
Sbjct: 591 GVTKETGISWIEIE 604



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 92/355 (25%), Positives = 185/355 (52%), Gaps = 17/355 (4%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG-ERP 144
           LL ++ +CG L+ A ++FD +P +   ++N  I+G L NG +E    + ++L  SG  + 
Sbjct: 95  LLSMYSRCGELRDATKVFDHMPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQF 154

Query: 145 DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSY 204
           D  T + +L   T C  + P    + +M+H+ +     + +  +  AL+ SY + G  S 
Sbjct: 155 DQATLTTVL---TAC--DKPEFCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSS 209

Query: 205 ARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSI 260
            R VFD M EKNV+  T++ISG     F E++ ++F K     V+ + + Y + +   S 
Sbjct: 210 GRRVFDEMSEKNVVTWTAVISGLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACS- 268

Query: 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
            ++  R+  ++H  + K     D+ + SAL+DMY+KCG ++DA ++F+  ++ +  + T 
Sbjct: 269 GLQAIREGRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTV 328

Query: 321 MIDGYGKNGNPNQALELFCMMQE--CCVQPNYVTFLGALSACGHAGLVDKGREIFESMER 378
           ++ G  +NG   +++++F  M +    + PN ++ +  L   G    +  G++I  S+  
Sbjct: 329 ILVGLAQNGFEEESIQVFVKMVKNGVVIDPNMISAI--LGVFGIDTSLALGKQI-HSLII 385

Query: 379 DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDD 433
             S          ++++  + G L+ ++K    MP++ NS  W +++++   H +
Sbjct: 386 KKSFGSNYFVNNGLINMYSKCGDLDDSIKIFCWMPQR-NSVSWNSMIAAFARHGN 439



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 74/265 (27%), Positives = 131/265 (49%), Gaps = 22/265 (8%)

Query: 168 NLGRMVHAQILKC----------DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
           +LG  +HA I+K           +++   V++ +L+  Y + G+   A  VFD M  K+ 
Sbjct: 61  HLGSSLHASIIKNFGFLDGNNRDNLRNVIVVWNSLLSMYSRCGELRDATKVFDHMPMKDT 120

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE------- 270
           I   S ISG +  G +E    +F++  E  I  ++   +    ++ TA    E       
Sbjct: 121 ISWNSRISGLLGNGDIEMGFRVFKQLYESGIYQFD---QATLTTVLTACDKPEFCYVSKM 177

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           +H  +    +  ++ +G+AL+  Y +CG     RRVFD M +KNV TWT++I G  +   
Sbjct: 178 IHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISGLSQGQF 237

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
             ++L+LF  M++  V PN +T+L +L AC     + +GR+I   +     +   +   +
Sbjct: 238 YEESLKLFGKMRDGPVDPNSLTYLSSLMACSGLQAIREGRQI-HGLVWKLGVHFDLCIES 296

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEK 415
            ++D+  + GSLE A K + E  E+
Sbjct: 297 ALMDMYSKCGSLEDAWK-IFESAEE 320



 Score = 68.9 bits (167), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 122/274 (44%), Gaps = 14/274 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH  + K GV  +  I   L+ ++ KCG+L+ A ++F+   +    +   ++ G  +
Sbjct: 276 GRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQ 335

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  EES+ +  K+V +G   D    S IL         +     LG+ +H+ I+K    
Sbjct: 336 NGFEEESIQVFVKMVKNGVVIDPNMISAILGV-----FGIDTSLALGKQIHSLIIKKSFG 390

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           ++  +   L++ Y K G    +  +F  M ++N +   SMI+ F   G    A +++ + 
Sbjct: 391 SNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEM 450

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG------SALVDMYAKC 297
             +   V+   +   S+    A   L            +D  +G      + +VDM  + 
Sbjct: 451 RLEG--VWPTDVTFLSLLHACAHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRA 508

Query: 298 GKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNGN 330
           G +++A++  + + +K  +  W +++     +GN
Sbjct: 509 GLLNEAKKFIERLPEKPGILVWQALLGACSIHGN 542



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 99/235 (42%), Gaps = 29/235 (12%)

Query: 271 VHCQLIKNVFFED----------VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
           +H  +IKN  F D          + + ++L+ MY++CG++ DA +VFDHM  K+  +W S
Sbjct: 66  LHASIIKNFGFLDGNNRDNLRNVIVVWNSLLSMYSRCGELRDATKVFDHMPMKDTISWNS 125

Query: 321 MIDGYGKNGNPNQALELFCMMQECCV-QPNYVTFLGALSACGHAGLVDKGREIFESMERD 379
            I G   NG+      +F  + E  + Q +  T    L+AC         + I  S+   
Sbjct: 126 RISGLLGNGDIEMGFRVFKQLYESGIYQFDQATLTTVLTACDKPEFCYVSKMI-HSLVFL 184

Query: 380 YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANI 439
           Y  + ++     ++    R G      +   EM EK N   W A++S        E    
Sbjct: 185 YGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEK-NVVTWTAVISGLSQGQFYE---- 239

Query: 440 AANEIFKLNANDR-----PGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTG 489
              E  KL    R     P +   LS+ +A +G    +  +RE  ++ G++   G
Sbjct: 240 ---ESLKLFGKMRDGPVDPNSLTYLSSLMACSG----LQAIREGRQIHGLVWKLG 287


>gi|51090919|dbj|BAD35524.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|51090953|dbj|BAD35556.1| selenium-binding protein-like [Oryza sativa Japonica Group]
          Length = 615

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 143/448 (31%), Positives = 261/448 (58%), Gaps = 12/448 (2%)

Query: 50  SALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQR 109
           +A+   I     + G ++HA +     +P   +  +L+ ++++CGAL  A  + D +P+R
Sbjct: 47  AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPER 106

Query: 110 TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL 169
           ++ ++  MI+GY +  +  E+L L  K++ +G  P+ YT + +L   T C    P     
Sbjct: 107 SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVL---TSCSG--PQSIYQ 161

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           G+ VH+ ++K + ++   + ++L+D Y K      AR VFD + E++V+  T++ISG+  
Sbjct: 162 GKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQ 221

Query: 230 QGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
           +G  E+A ++FR+   + +    V +  ++   S  + +     +VH  +++      V 
Sbjct: 222 KGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALS-GLASLDYGKQVHALILRKELPFFVA 280

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           L ++L+DMY+KCGK+  +RRVFD+M +++V +W +M+ GYG++G  ++ + LF  + +  
Sbjct: 281 LQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE- 339

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
           V+P+ VT L  LS C H GLVD+G +IF+++ ++ S      HY C++DLLGR+G LE+A
Sbjct: 340 VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKA 399

Query: 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465
           L  +  MP +    +W +LL +CR+H +V +  + A ++ ++   +  G YV LSN  AA
Sbjct: 400 LNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPEN-AGNYVILSNIYAA 458

Query: 466 AGKWDSVTELREKMKLRGVLKDTGCSWV 493
           AG W  V ++R+ M  + V K+ G SW+
Sbjct: 459 AGMWKDVFKVRKLMLEKTVTKEPGQSWI 486



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 151/306 (49%), Gaps = 42/306 (13%)

Query: 33  LQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLK 92
           + N  +L+  LT+ S P ++         + G ++H+ + KT  + +  +   LL ++ K
Sbjct: 140 IPNEYTLATVLTSCSGPQSI---------YQGKQVHSLLVKTNFESHMFVGSSLLDMYAK 190

Query: 93  CGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
              ++ A ++FD LP+R + +   +I+GY + G  EE+L L R+L S G + +  TF+ +
Sbjct: 191 SENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTL 250

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           + A +   S      + G+ VHA IL+ ++     L  +L+D Y K GK  Y+R VFD M
Sbjct: 251 VTALSGLAS-----LDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNM 305

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFR---KTVEKDIVVYNAMIEGYSISIETARKAL 269
           LE++V+   +M+ G+   G   +   +F+   K V+ D V   A++ G S          
Sbjct: 306 LERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKEVKPDSVTLLAVLSGCS---------- 355

Query: 270 EVHCQLIK---NVFFEDVKLGSAL---------VDMYAKCGKIDDARRVFDHMQ-QKNVF 316
             H  L+    ++F   VK  SAL         +D+  + G+++ A  + ++M  +    
Sbjct: 356 --HGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPS 413

Query: 317 TWTSMI 322
            W S++
Sbjct: 414 IWGSLL 419


>gi|297835482|ref|XP_002885623.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331463|gb|EFH61882.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  271 bits (692), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 156/504 (30%), Positives = 274/504 (54%), Gaps = 40/504 (7%)

Query: 29  FPPKL-------QNYDSLSNPLTATSLPSALQH--------YINSDTPFY---------- 63
           FP +L       +   SL  PL+  S   +L+         YI  D  FY          
Sbjct: 5   FPSRLLSQLKLSRRLHSLPAPLSEDSDDESLKFPSNDLEGSYIPVDRRFYNTLLKKCTVF 64

Query: 64  -----GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMI 118
                G  +H H+ ++  + +  ++  LL ++ KCG+L+ A ++FD++P+R    +  +I
Sbjct: 65  KLLTQGRIVHGHLIQSIFRHDLVMNNTLLNMYAKCGSLEEARKVFDKMPERDFVTWTTLI 124

Query: 119 AGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
           +GY ++ +  ++L L  +++  G  P+ +T S ++KA+   R         G  +H   +
Sbjct: 125 SGYSQHDRPFDALVLFNQMLRFGFSPNEFTLSSVIKAAAAERRGC-----CGHQLHGFCV 179

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
           KC   ++  + +AL+D Y + G    A++VFD +  +N +   ++I+G   +   E A E
Sbjct: 180 KCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHARRCGTEKALE 239

Query: 239 IFRKTVEKDIVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
           +F+  + +     +   A + G   S     +   VH  +IK+        G+ L+DMYA
Sbjct: 240 LFQGMLREGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFAGNTLLDMYA 299

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           K G I DAR++FD + +++V +W S++  Y ++G  N+A+  F  M+   ++PN ++FL 
Sbjct: 300 KSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGNEAVCWFEEMRRGGIRPNEISFLS 359

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            L+AC H+GL+D+G   +E M++D  +  +  HY  +VDLLGRAG L +AL+F+ EMP +
Sbjct: 360 VLTACSHSGLLDEGWHYYELMKKD-GIVLEAWHYVTIVDLLGRAGDLNRALRFIEEMPIE 418

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
           P + +W ALL++CR+H + E+   AA  +F+L+ +D PG +V L N  A+ G+W+    +
Sbjct: 419 PTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDD-PGPHVILYNIYASGGRWNDAARV 477

Query: 476 REKMKLRGVLKDTGCSWVGTESGL 499
           R+KMK  GV K+  CSWV  E+ +
Sbjct: 478 RKKMKESGVKKEPACSWVEIENAI 501


>gi|224131262|ref|XP_002328495.1| predicted protein [Populus trichocarpa]
 gi|222838210|gb|EEE76575.1| predicted protein [Populus trichocarpa]
          Length = 580

 Score =  271 bits (692), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 164/464 (35%), Positives = 251/464 (54%), Gaps = 44/464 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IH     TG+     +   L+ ++L+ G ++ A Q+F+++P   + ++N MI GY K G
Sbjct: 84  QIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPSPDIVSFNVMIVGYAKKG 143

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQI--LKCDVK 183
              E++ L  ++V  G  PD +T   +L  S     NV      G+ VH  +   K  + 
Sbjct: 144 FGLEAMRLFHEMVGLGLEPDEFTILGLL-VSCGQLGNV----KFGKAVHGWMERRKPTIS 198

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           ++ +L  AL+D YVK  K   A   F  + EK+++    +++G    G +E A   F + 
Sbjct: 199 SNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVGELEQARLFFYQM 258

Query: 244 VEKDIVVYNAMIEGYS------------------------------ISIETARKALE--- 270
             +DIV +N+++ GY+                              +S  T   AL+   
Sbjct: 259 PCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMISLVSAATESGALDQGR 318

Query: 271 -VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
             H  +I+     D  LGSAL+DMY KCG I+ A RVF  + +K+V  WT+MI G   +G
Sbjct: 319 WAHGWVIRMQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKKDVTVWTTMITGLAFHG 378

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
             ++ALELF  MQE  V P+ VTF+  LSAC H+GLVD+G ++F SM  DY ++P +EHY
Sbjct: 379 YGSKALELFSEMQED-VSPDDVTFVSVLSACSHSGLVDQGIKVFSSM-TDYGIEPGVEHY 436

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
            C+VDLL R+G L +A   + +MP KP+  +W A+L++C+   DVE+A IA+ E+  L+ 
Sbjct: 437 GCLVDLLARSGRLSEAKDIIDQMPMKPSRSIWGAMLNACQAQGDVELAEIASRELLNLDP 496

Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            +  G Y  LSN  AA+G+W    ++RE M+ RGV K  GCS V
Sbjct: 497 EEE-GGYTLLSNIYAASGRWSYSKKIRETMESRGVKKTAGCSSV 539



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 164/375 (43%), Gaps = 52/375 (13%)

Query: 96  LKYAGQMFDEL-PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
           L  A  +F+   P   L  YN +I+ +    ++E S  L   L+SSGE PD  T   +L+
Sbjct: 16  LDLAITLFNHFTPNPNLFIYNTLISAFSSLKKIE-SFYLYNVLLSSGECPDKQTLLYLLQ 74

Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE 214
           A     S V       + +H Q +   + +   L   L+  Y++ G    A  VF+ M  
Sbjct: 75  AVNFI-SQV-------KQIHCQAIVTGLFSFGYLQNTLIKVYLENGLVRLAHQVFEKMPS 126

Query: 215 KNVICSTSMISGFMSQGFVEDAEEIFRKTV-----EKDIVVYNAMIEGYSISIETARKAL 269
            +++    MI G+  +GF  +A  +F + V       +  +   ++    +      KA+
Sbjct: 127 PDIVSFNVMIVGYAKKGFGLEAMRLFHEMVGLGLEPDEFTILGLLVSCGQLGNVKFGKAV 186

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
               +  K     ++ LG+AL+DMY KC K++ A R F  +++K++ +W  ++ G  K G
Sbjct: 187 HGWMERRKPTISSNLILGNALLDMYVKCQKVELALRTFGALKEKDIVSWNMIVAGCAKVG 246

Query: 330 NPNQALELFCMM------------------------QECCVQ-------PNYVTFLGALS 358
              QA   F  M                        +E  V        P+ VT +  +S
Sbjct: 247 ELEQARLFFYQMPCRDIVSWNSLVTGYACRGDFASVKELIVDMVMEKVIPDTVTMISLVS 306

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHY--ACMVDLLGRAGSLEQALKFVLEMPEKP 416
           A   +G +D+GR     + R   M+ K++ +  + ++D+  + GS+E+A +   E+ +K 
Sbjct: 307 AATESGALDQGRWAHGWVIR---MQIKLDAFLGSALIDMYCKCGSIERASRVFKEINKK- 362

Query: 417 NSDVWAALLSSCRLH 431
           +  VW  +++    H
Sbjct: 363 DVTVWTTMITGLAFH 377


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  271 bits (692), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 164/523 (31%), Positives = 263/523 (50%), Gaps = 79/523 (15%)

Query: 44   TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
            ++ +   A+  Y      + G  +HAH+   G+   T  + KL+  + +CG L  A ++F
Sbjct: 802  SSDTYAKAIDMYARDRALYRGRALHAHLVIIGLARLTYFAAKLMSFYTECGQLSNARKLF 861

Query: 104  DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
            D++P   +  +  +     + G  EE+LS   ++   G RP+ +    ILKA  C   + 
Sbjct: 862  DKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKA--CGHLS- 918

Query: 164  PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
               R  G  +H  ILK   ++D  + +AL+  Y K G    A  VFD +++K+++   +M
Sbjct: 919  --DRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAM 976

Query: 224  ISGFMSQGFVEDA-----------------------------------EEIFR----KTV 244
            +SG+   GFV +A                                    E+FR      V
Sbjct: 977  VSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGV 1036

Query: 245  EKDIVVYNAMIEGY------------------------SISIETA----------RKALE 270
            E D+V + ++I G+                        S++I +           R   E
Sbjct: 1037 EPDVVSWTSVISGFVQNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKE 1096

Query: 271  VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
            +H   +     +DV + SALVDMYAKCG I +A+ +F  M ++N  TW S+I GY  +G 
Sbjct: 1097 IHGYAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGY 1156

Query: 331  PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
             N+A+ELF  M+E   + +++TF   L+AC HAG+V+ G  +F  M+  Y ++P++EHYA
Sbjct: 1157 CNEAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYA 1216

Query: 391  CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
            CMVDLLGRAG L +A   +  MP +P+  VW ALL +CR H ++E+A +AA  +F+L   
Sbjct: 1217 CMVDLLGRAGKLSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEP- 1275

Query: 451  DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            + PG+ + LSN  A AG+W +  ++++ MK R   K  GCSW+
Sbjct: 1276 ESPGSSLLLSNLYADAGRWGNAAKMKKMMKQRKFGKFPGCSWI 1318



 Score =  268 bits (684), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 149/464 (32%), Positives = 255/464 (54%), Gaps = 21/464 (4%)

Query: 35  NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           N+ + S  L      SA+Q          G ++HAH+ K      T +   LL L+ KCG
Sbjct: 213 NHYTYSTMLAVCGTISAIQE---------GKQLHAHVVKMQYLSETAVGNALLTLYSKCG 263

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
            ++ A  +F+ L QR + ++   I G+ ++G  +++L     +  SG  P+ +TFS++L 
Sbjct: 264 MMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLA 323

Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM-L 213
           +  C +  +      GRM H Q++K  + +   + TA++D Y   G+   A   F  M  
Sbjct: 324 SCGCVKDFID-----GRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGR 378

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIV----VYNAMIEGYSISIETARKAL 269
             + +   ++I+G++    +E A E F + V++D+      Y+ + +  S S  +    +
Sbjct: 379 AASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFKACS-SFPSLATTV 437

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
           ++H +LIK+    ++ + S+L++ Y +CG +++A +VF  +   +V +W S+I  Y +NG
Sbjct: 438 QIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVVSWNSIIKAYSQNG 497

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
           +P +A+ L   M E   +P   TFL  LSAC H+GLV +G+E F+SM +DYS++P+  H 
Sbjct: 498 DPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFKSMVQDYSIQPEETHC 557

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
           +CMVD+LGRAG LE AL F+ ++  KP + +W  LL++CR + +++MA   A +I  L  
Sbjct: 558 SCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYNSNLQMAEYVAEKILDLEP 617

Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           ND    YV LSN  A  G+W      R  M+ + + K+ GCSW+
Sbjct: 618 ND-ATVYVTLSNMYAEVGRWADAENQRRLMEQKEISKEPGCSWI 660



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 164/331 (49%), Gaps = 22/331 (6%)

Query: 147 YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR 206
           Y FS +   S C R        LGR  H  ++K  + +D+ + T+L+D Y K G+   A 
Sbjct: 115 YVFSAL---SFCGREGCV---ELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAV 168

Query: 207 IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISI 262
            V+D M   +      +IS +   GF   A ++F +        +   Y+ M+     +I
Sbjct: 169 RVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTML-AVCGTI 227

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
              ++  ++H  ++K  +  +  +G+AL+ +Y+KCG +++A  VF+ ++Q+N+ +WT+ I
Sbjct: 228 SAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASI 287

Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382
           +G+ ++G+  +AL+ F MM+E  ++PN  TF   L++CG       GR +F +      M
Sbjct: 288 NGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCGCVKDFIDGR-MFHTQVIKKGM 346

Query: 383 KPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA----- 437
              +     ++D+    G +++A K   +M    ++  W AL++   L++ +E A     
Sbjct: 347 ASGVFVGTAIIDMYSGLGEMDEAEKQFKQMGRAASNVSWNALIAGYVLNEKIEKAMEAFC 406

Query: 438 -----NIAANEIFKLNANDRPGAYVALSNTL 463
                ++A NE    N      ++ +L+ T+
Sbjct: 407 RMVKEDVACNEFTYSNIFKACSSFPSLATTV 437



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/380 (23%), Positives = 176/380 (46%), Gaps = 25/380 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G + H  + K G+  +  +   L+ ++ KCG +  A +++D++     +  N +I+ Y +
Sbjct: 132 GRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYAR 191

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG   ++  +  ++ + G RP+ YT+S +L     C +   +    G+ +HA ++K    
Sbjct: 192 NGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAV---CGTISAIQE--GKQLHAHVVKMQYL 246

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           ++  +  AL+  Y K G    A IVF+ + ++N+I  T+ I+GF   G  + A + F   
Sbjct: 247 SETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMM 306

Query: 244 VEKDIVVYNAMIEGYSISIETARKALE---VHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
            E  I            S    +  ++    H Q+IK      V +G+A++DMY+  G++
Sbjct: 307 RESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASGVFVGTAIIDMYSGLGEM 366

Query: 301 DDARRVFDHMQQ--KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           D+A + F  M +   NV +W ++I GY  N    +A+E FC M +  V  N  T+     
Sbjct: 367 DEAEKQFKQMGRAASNV-SWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIFK 425

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---- 414
           AC     +    +I   + +  +++  +   + +++   + GSLE A++   ++ +    
Sbjct: 426 ACSSFPSLATTVQIHSRLIKS-NVESNLHVASSLIEAYTQCGSLENAVQVFTQISDADVV 484

Query: 415 ---------KPNSDVWAALL 425
                      N D W A+ 
Sbjct: 485 SWNSIIKAYSQNGDPWKAIF 504


>gi|357118962|ref|XP_003561216.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 900

 Score =  271 bits (692), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 158/433 (36%), Positives = 241/433 (55%), Gaps = 13/433 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++HA   + G     N+S  +L ++ KCGA+  A ++FD +  R   ++N MI GY +NG
Sbjct: 348 EVHAFAVRGGFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENG 407

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              E+L+L +++V  GE  D    S++     C         + GR VH  +++  ++++
Sbjct: 408 DATEALALFKRMV--GEGVDVTDVSVLAALHACGELGF---LDEGRRVHELLVRIGLESN 462

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK--- 242
             +  AL+  Y K  +T  A  VFD +  K  +   +MI G    G  EDA  +F +   
Sbjct: 463 VNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQL 522

Query: 243 -TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
             V+ D     ++I   +  I    +A  +H   I+    +DV + +AL+DMYAKCG++ 
Sbjct: 523 ENVKPDSFTLVSIIPALA-DISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVS 581

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            AR +F+  + ++V TW +MI GYG +G+   A+ELF  M+     PN  TFL  LSAC 
Sbjct: 582 IARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACS 641

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
           HAGLVD+G+E F SM+ DY ++P MEHY  MVDLLGRAG L +A  F+ +MP +P   V+
Sbjct: 642 HAGLVDEGQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFIQKMPMEPGISVY 701

Query: 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY-VALSNTLAAAGKWDSVTELREKMK 480
            A+L +C+LH +VE+A  +A  IF+L   +  G Y V L+N  A A  W  V  +R  M+
Sbjct: 702 GAMLGACKLHKNVELAEESAQRIFELEPEE--GVYHVLLANIYANASLWKDVARVRTAME 759

Query: 481 LRGVLKDTGCSWV 493
            +G+ K  G S V
Sbjct: 760 KKGLQKTPGWSIV 772



 Score =  134 bits (338), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 92/305 (30%), Positives = 151/305 (49%), Gaps = 19/305 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +HA +   G+ P    +  L  ++ KC     A ++FD +P R   A+N ++AGY +
Sbjct: 244 GRAVHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYAR 303

Query: 124 NGQVEESLSLVRKLVSS-GERPDGYTFSMILKASTCCRSNVPLPRNLG--RMVHAQILKC 180
           NG  E ++ +V ++    GERPD  T   +L A  C  +       LG  R VHA  ++ 
Sbjct: 304 NGLAEAAVGMVVRMQEEDGERPDAVTLVSVLPA--CADAQA-----LGACREVHAFAVRG 356

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
                  + TA++D Y K G    AR VFD M ++N +   +MI G+   G   +A  +F
Sbjct: 357 GFDEQVNVSTAILDVYCKCGAVDSARKVFDGMQDRNSVSWNAMIKGYAENGDATEALALF 416

Query: 241 RKTVEK-----DIVVYNAMIEGYSIS-IETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
           ++ V +     D+ V  A+     +  ++  R+   VH  L++     +V + +AL+ MY
Sbjct: 417 KRMVGEGVDVTDVSVLAALHACGELGFLDEGRR---VHELLVRIGLESNVNVMNALITMY 473

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
            KC + D A +VFD +  K   +W +MI G  +NG+   A+ LF  MQ   V+P+  T +
Sbjct: 474 CKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQNGSSEDAVRLFSRMQLENVKPDSFTLV 533

Query: 355 GALSA 359
             + A
Sbjct: 534 SIIPA 538



 Score = 96.7 bits (239), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 149/328 (45%), Gaps = 50/328 (15%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H  + + G++ N N+   L+ ++ KC     A Q+FDEL  +T  ++N MI G  +
Sbjct: 447 GRRVHELLVRIGLESNVNVMNALITMYCKCKRTDLAAQVFDELGYKTRVSWNAMILGCTQ 506

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  E+++ L  ++     +PD +T   I+ A     +++  P    R +H   ++  + 
Sbjct: 507 NGSSEDAVRLFSRMQLENVKPDSFTLVSIIPA----LADISDPLQ-ARWIHGYSIRLHLD 561

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  + TAL+D Y K G+ S AR +F+   +++VI   +MI G+ S G  + A E+F + 
Sbjct: 562 QDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHGYGSHGSGKVAVELFEE- 620

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
                     M     +  ET   ++   C                     +  G +D+ 
Sbjct: 621 ----------MKSSGKVPNETTFLSVLSAC---------------------SHAGLVDEG 649

Query: 304 RRVFDHMQQK-----NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           +  F  M++       +  + +M+D  G+ G  ++A   +  +Q+  ++P    +   L 
Sbjct: 650 QEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEA---WSFIQKMPMEPGISVYGAMLG 706

Query: 359 ACGHAGLVDKGREIF-ESMERDYSMKPK 385
           AC     + K  E+  ES +R + ++P+
Sbjct: 707 ACK----LHKNVELAEESAQRIFELEPE 730



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 3/156 (1%)

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           VH QL       +    +AL +MYAKC +  DARRVFD M  ++   W +++ GY +NG 
Sbjct: 247 VHAQLAARGLSPEALAATALANMYAKCRRPGDARRVFDRMPARDRVAWNALVAGYARNGL 306

Query: 331 PNQALELFCMMQ-ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
              A+ +   MQ E   +P+ VT +  L AC  A  +   RE+     R      ++   
Sbjct: 307 AEAAVGMVVRMQEEDGERPDAVTLVSVLPACADAQALGACREVHAFAVRG-GFDEQVNVS 365

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
             ++D+  + G+++ A K    M ++ NS  W A++
Sbjct: 366 TAILDVYCKCGAVDSARKVFDGMQDR-NSVSWNAMI 400



 Score = 48.1 bits (113), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 56/258 (21%), Positives = 102/258 (39%), Gaps = 42/258 (16%)

Query: 61  PFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120
           P     IH +  +  +  +  +   L+ ++ KCG +  A  +F+    R +  +N MI G
Sbjct: 545 PLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVSIARSLFNSARDRHVITWNAMIHG 604

Query: 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
           Y  +G  + ++ L  ++ SSG+ P+  TF  +L A +                       
Sbjct: 605 YGSHGSGKVAVELFEEMKSSGKVPNETTFLSVLSACS----------------------- 641

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
                   +  LVD     G+  ++ +  D  LE  +    +M+      G + +A    
Sbjct: 642 --------HAGLVDE----GQEYFSSMKEDYGLEPGMEHYGTMVDLLGRAGKLHEAWSFI 689

Query: 241 RKT-VEKDIVVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           +K  +E  I VY AM+    +  ++E A    E   Q I  +  E+      L ++YA  
Sbjct: 690 QKMPMEPGISVYGAMLGACKLHKNVELA----EESAQRIFELEPEEGVYHVLLANIYANA 745

Query: 298 GKIDDARRVFDHMQQKNV 315
               D  RV   M++K +
Sbjct: 746 SLWKDVARVRTAMEKKGL 763


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  270 bits (691), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 137/405 (33%), Positives = 239/405 (59%), Gaps = 9/405 (2%)

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           KCG+L YA ++F  +  +TL+++N +I GY ++     SL    ++ +SG  PD +T   
Sbjct: 426 KCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCS 485

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           +L A +  +S       LG+ VH  I++  ++ D  +Y +++  Y+  G+    +++FD 
Sbjct: 486 LLSACSKLKS-----LRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQVLFDA 540

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIV---VYNAMIEGYSISIETARKA 268
           M + +++   ++I+G +  GF E A  +FR+ V   I    +    + G    + + R  
Sbjct: 541 MEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMTVFGACSLLPSLRLG 600

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
            E H   +K++  ++  +  +++DMYAK G I  + +VF+ +++K+  +W +MI GYG +
Sbjct: 601 REAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGMH 660

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G   +A++LF  MQ     P+ +TFLG L+AC H+GL+ +G    + M+  + +KP ++H
Sbjct: 661 GRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRYLDQMKSSFGLKPNLKH 720

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
           YAC++D+LGRAG L+ AL+   EM E+P+  +W +LLS CR+H ++EM    A ++F L 
Sbjct: 721 YACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGEKVAAKLFVLE 780

Query: 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             ++P  YV LSN  A  GKWD V ++R++MK   + KD GCSW+
Sbjct: 781 P-EKPENYVLLSNLYAGLGKWDDVRQVRQRMKEMSLRKDAGCSWI 824



 Score =  122 bits (305), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/324 (25%), Positives = 154/324 (47%), Gaps = 26/324 (8%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           GL +H  + KTG+  +  +   L+  +   G +  A ++FD +P+R L ++N MI  +  
Sbjct: 206 GLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSD 265

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG                  PD  T   +L    C R        +G+ VH   +K  + 
Sbjct: 266 NGD------------DGAFMPDVATVVTVLP--VCARER---EIGVGKGVHGWAVKLSLD 308

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            + V+  AL+D Y K G    ++++F +   KNV+   +M+ GF ++G +    ++ R+ 
Sbjct: 309 KELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQM 368

Query: 244 VE-------KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
           +         ++ + NA+   +  S+  + K  E+HC  +K  F  D  L +A V  YAK
Sbjct: 369 LAGSEDVKADEVTILNAVPVCFDESVLPSLK--ELHCYSLKQEFVYDELLANAFVASYAK 426

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG +  A+RVF  ++ K + +W ++I GY ++ +P  +L+    M+   + P+  T    
Sbjct: 427 CGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDAHLQMKNSGLLPDNFTVCSL 486

Query: 357 LSACGHAGLVDKGREIFESMERDY 380
           LSAC     +  G+E+   + R++
Sbjct: 487 LSACSKLKSLRLGKEVHGFIIRNW 510



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 140/301 (46%), Gaps = 18/301 (5%)

Query: 64  GLKIHAHIT-KTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G KIH  ++  T ++ +  +  +++ ++  CG+   +   FD L  + L  +N +I+ Y 
Sbjct: 103 GRKIHHLVSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYS 162

Query: 123 KNGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           +N    E L +  K++S     PD +TF  ++KA     S+V     +G  VH  ++K  
Sbjct: 163 RNELYHEVLEMFIKMISKTHLLPDNFTFPCVIKACAGI-SDV----GIGLAVHGLVVKTG 217

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +  D  +  ALV  Y   G  S A  +FD+M E+N++   SMI  F   G     +  F 
Sbjct: 218 LVEDLFVGNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNG----DDGAFM 273

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
             V   + V         I +        VH   +K    +++ + +AL+DMY+K G I 
Sbjct: 274 PDVATVVTVLPVCAREREIGVGKG-----VHGWAVKLSLDKELVVNNALMDMYSKWGCII 328

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC--VQPNYVTFLGALSA 359
           D++ +F     KNV +W +M+ G+   G+ +   +L   M      V+ + VT L A+  
Sbjct: 329 DSQMIFKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPV 388

Query: 360 C 360
           C
Sbjct: 389 C 389



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 147/297 (49%), Gaps = 15/297 (5%)

Query: 32  KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHL 91
           +++N   L +  T  SL SA        +   G ++H  I +  ++ +  + + +L L++
Sbjct: 470 QMKNSGLLPDNFTVCSLLSACSKL---KSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYI 526

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
            CG L     +FD +   +L ++N +I G+L+NG  E +L L R++V  G +P G   SM
Sbjct: 527 HCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCG--ISM 584

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           +     C  S +P  R LGR  HA  LK  ++ +  +  +++D Y K G  + +  VF+ 
Sbjct: 585 MTVFGAC--SLLPSLR-LGREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNG 641

Query: 212 MLEKNVICSTSMISGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSISIETARK 267
           + EK+     +MI G+   G  ++A    EE+ R     D + +  ++   + S     +
Sbjct: 642 LKEKSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHS-GLLHE 700

Query: 268 ALEVHCQLIKNVFFE-DVKLGSALVDMYAKCGKIDDARRVFDHM-QQKNVFTWTSMI 322
            L    Q+  +   + ++K  + ++DM  + G++D+A RV   M ++ +V  W S++
Sbjct: 701 GLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLL 757



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 56/224 (25%), Positives = 105/224 (46%), Gaps = 16/224 (7%)

Query: 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGY------TFSMILKASTCCRSNVPLPRNLGR 171
           I+ + + G +++S  +V++     E              ++L+AS   R ++ + R +  
Sbjct: 50  ISNFCETGDLDKSFRVVQEFAGDDESSSDVFLLVREALGLLLQASGK-RKDIEMGRKIHH 108

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
           +V        +++DDVL T ++  Y   G    +R  FD +  KN+    ++IS +    
Sbjct: 109 LVSGST---RLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNE 165

Query: 232 FVEDAEEIFRKTVEK-----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
              +  E+F K + K     D   +  +I+  +  I      L VH  ++K    ED+ +
Sbjct: 166 LYHEVLEMFIKMISKTHLLPDNFTFPCVIKACA-GISDVGIGLAVHGLVVKTGLVEDLFV 224

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           G+ALV  Y   G + DA ++FD M ++N+ +W SMI  +  NG+
Sbjct: 225 GNALVSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNGD 268



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 5/145 (3%)

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC-MM 341
           D  L + ++ MYA CG  DD+R  FD ++ KN+F W ++I  Y +N   ++ LE+F  M+
Sbjct: 119 DDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMI 178

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREI-FESMERDYSMKPKMEHYACMVDLLGRAG 400
            +  + P+  TF   + AC  AG+ D G  +    +     +   +     +V   G  G
Sbjct: 179 SKTHLLPDNFTFPCVIKAC--AGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHG 236

Query: 401 SLEQALKFVLEMPEKPNSDVWAALL 425
            +  ALK    MPE+ N   W +++
Sbjct: 237 FVSDALKLFDIMPER-NLVSWNSMI 260



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 61/252 (24%), Positives = 112/252 (44%), Gaps = 42/252 (16%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G + HA+  K  ++ N  I+  ++ ++ K GA+  + ++F+ L +++ +++N MI GY  
Sbjct: 600 GREAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKEKSAASWNAMIMGYGM 659

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP--RNLGRMVHAQILKCD 181
           +G+ +E++ L  ++  +G  PD  TF  +L A  C  S +     R L +M  +  LK +
Sbjct: 660 HGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTA--CNHSGLLHEGLRYLDQMKSSFGLKPN 717

Query: 182 VKADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
           +K     Y  ++D   + G+   A R+  +M  E +V    S++S       +E  E   
Sbjct: 718 LKH----YACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIHQNLEMGE--- 770

Query: 241 RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
            K   K  V+     E Y +                             L ++YA  GK 
Sbjct: 771 -KVAAKLFVLEPEKPENYVL-----------------------------LSNLYAGLGKW 800

Query: 301 DDARRVFDHMQQ 312
           DD R+V   M++
Sbjct: 801 DDVRQVRQRMKE 812


>gi|147799187|emb|CAN74829.1| hypothetical protein VITISV_002140 [Vitis vinifera]
          Length = 542

 Score =  270 bits (691), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 154/434 (35%), Positives = 241/434 (55%), Gaps = 11/434 (2%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           IH+ +   G +    +   L+  + +CG      ++FDE+ ++ +  +  +I+G L  GQ
Sbjct: 64  IHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVISG-LSQGQ 122

Query: 127 V-EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             EESL L  K+      P+  T+   L +   C S +   R  GR +H  + K  V  D
Sbjct: 123 FYEESLKLFGKMRDGPVDPNSLTY---LSSLMAC-SGLQAIRE-GRQIHGLVWKLGVHFD 177

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             + +AL+D Y K G    A  +F+   E + +  T ++ G    GF E++ ++F K V+
Sbjct: 178 LCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKMVK 237

Query: 246 KDIVVYNAMIEGY--SISIETARK-ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
             +V+   MI        I+T+     ++H  +IK  F  +  + + L++MY+KCG +DD
Sbjct: 238 NGVVIDPNMISAILGVFGIDTSLALGKQIHSLIIKKSFGSNYFVNNGLINMYSKCGDLDD 297

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           + ++F  M Q+N  +W SMI  + ++GN ++AL+L+  M+   V P  VTFL  L AC H
Sbjct: 298 SIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEMRLEGVWPTDVTFLSLLHACAH 357

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
            GLV+KG    ESM +DY + P+MEHYAC+VD++GRAG L +A KF+  +PEKP   VW 
Sbjct: 358 VGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRAGLLNEAKKFIERLPEKPGILVWQ 417

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
           ALL +C +H + EM   AAN++F L A + P  Y+ L+N  ++ GKW       +KMK  
Sbjct: 418 ALLGACSIHGNSEMGKYAANQLF-LQAPESPAPYILLANIYSSEGKWKERARTIKKMKDM 476

Query: 483 GVLKDTGCSWVGTE 496
           GV K+TG SW+  E
Sbjct: 477 GVTKETGISWIEIE 490



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 81/334 (24%), Positives = 166/334 (49%), Gaps = 15/334 (4%)

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           +P +   ++N  I+G L NG +E    + ++L  SG     Y F      +     + P 
Sbjct: 1   MPMKDTISWNSRISGLLGNGDIEMGFRVFKQLYESGI----YQFDQATLTTVLTACDKPE 56

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
              + +M+H+ +     + +  +  AL+ SY + G  S  R VFD M EKNV+  T++IS
Sbjct: 57  FCYVSKMIHSLVFLYGYEREITVGNALITSYFRCGCCSSGRRVFDEMSEKNVVTWTAVIS 116

Query: 226 GFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFF 281
           G     F E++ ++F K     V+ + + Y + +   S  ++  R+  ++H  + K    
Sbjct: 117 GLSQGQFYEESLKLFGKMRDGPVDPNSLTYLSSLMACS-GLQAIREGRQIHGLVWKLGVH 175

Query: 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM 341
            D+ + SAL+DMY+KCG ++DA ++F+  ++ +  + T ++ G  +NG   +++++F  M
Sbjct: 176 FDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQNGFEEESIQVFVKM 235

Query: 342 QE--CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
            +    + PN ++ +  L   G    +  G++I  S+    S          ++++  + 
Sbjct: 236 VKNGVVIDPNMISAI--LGVFGIDTSLALGKQI-HSLIIKKSFGSNYFVNNGLINMYSKC 292

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDD 433
           G L+ ++K    MP++ NS  W +++++   H +
Sbjct: 293 GDLDDSIKIFCWMPQR-NSVSWNSMIAAFARHGN 325



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 60/274 (21%), Positives = 122/274 (44%), Gaps = 14/274 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH  + K GV  +  I   L+ ++ KCG+L+ A ++F+   +    +   ++ G  +
Sbjct: 162 GRQIHGLVWKLGVHFDLCIESALMDMYSKCGSLEDAWKIFESAEEVDEVSMTVILVGLAQ 221

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  EES+ +  K+V +G   D    S IL         +     LG+ +H+ I+K    
Sbjct: 222 NGFEEESIQVFVKMVKNGVVIDPNMISAILGV-----FGIDTSLALGKQIHSLIIKKSFG 276

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           ++  +   L++ Y K G    +  +F  M ++N +   SMI+ F   G    A +++ + 
Sbjct: 277 SNYFVNNGLINMYSKCGDLDDSIKIFCWMPQRNSVSWNSMIAAFARHGNGSRALQLYEEM 336

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG------SALVDMYAKC 297
             +   V+   +   S+    A   L            +D  +G      + +VDM  + 
Sbjct: 337 RLEG--VWPTDVTFLSLLHACAHVGLVEKGMGFLESMAKDYGIGPRMEHYACVVDMMGRA 394

Query: 298 GKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNGN 330
           G +++A++  + + +K  +  W +++     +GN
Sbjct: 395 GLLNEAKKFIERLPEKPGILVWQALLGACSIHGN 428


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  270 bits (691), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 156/439 (35%), Positives = 246/439 (56%), Gaps = 12/439 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH  + ++ ++ +  +   L+ ++ KCG + YA ++FD++  +++ A+N MI GY  
Sbjct: 246 GKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSL 305

Query: 124 NGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           N Q  ES + VRK+   G+  PD  T  MI     C +    L   LG+ VH   ++   
Sbjct: 306 NAQSFESFAYVRKMQEGGKLHPDWIT--MINLLPPCAQLEAIL---LGKSVHGFAIRNGF 360

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR- 241
               VL TALVD Y + GK   A  +F  M E+N+I   +MI+ +   G    A  +F+ 
Sbjct: 361 LPHLVLETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQD 420

Query: 242 ---KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
              KT++ D     +++  Y+  + + R+A ++H  + K     +  + +++V MY KCG
Sbjct: 421 LCNKTLKPDATTIASILPAYA-ELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCG 479

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            +  AR +FD M  K+V +W ++I  Y  +G    ++ELF  M+E   +PN  TF+  L 
Sbjct: 480 NLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLL 539

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           +C  AGLV++G E F SM+RDY++ P +EHY C++DL+GR G+L+ A  F+ EMP  P +
Sbjct: 540 SCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRTGNLDHAKNFIEEMPLAPTA 599

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            +W +LL++ R   DVE+A IAA  I  L  +D  G YV LSN  A AG+W+ V  ++  
Sbjct: 600 RIWGSLLTASRNKGDVELAEIAAEHILSLE-HDNTGCYVLLSNMYAEAGRWEDVERIKFH 658

Query: 479 MKLRGVLKDTGCSWVGTES 497
           MK  G+ K  GCS V   S
Sbjct: 659 MKKEGLEKSVGCSVVDLSS 677



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 123/464 (26%), Positives = 205/464 (44%), Gaps = 59/464 (12%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H  + K+G+  +  I   L+I++ K G ++ A  +F E+P R L ++N MI+GY+ 
Sbjct: 145 GERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVFREMPVRDLVSWNSMISGYVS 204

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G    SLS  R++ +SG + D ++   IL A +         RN G+ +H Q+++  ++
Sbjct: 205 VGDGWRSLSCFREMQASGIKLDRFSVIGILGACSL----EGFLRN-GKEIHCQMMRSRLE 259

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D ++ T+LVD Y K G+  YA  +FD + +K+++   +MI G+       ++    RK 
Sbjct: 260 LDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKM 319

Query: 244 VEKD------IVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
            E        I + N +       +E       VH   I+N F   + L +ALVDMY +C
Sbjct: 320 QEGGKLHPDWITMINLLPP--CAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGEC 377

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           GK+  A  +F  M ++N+ +W +MI  Y KNG   +A+ LF  +    ++P+  T    L
Sbjct: 378 GKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASIL 437

Query: 358 SA-----------------------------------CGHAGLVDKGREIFESMERDYSM 382
            A                                    G  G + + REIF+ M     +
Sbjct: 438 PAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFDRMTFKDVI 497

Query: 383 KPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK---PNSDVWAALLSSCRLHDDVEMANI 439
                  A  +   GR      +++   EM EK   PN   + +LL SC +   V     
Sbjct: 498 SWNTVIMAYAIHGFGRI-----SIELFSEMREKGFEPNGSTFVSLLLSCSVAGLVNEGWE 552

Query: 440 AANEIFKLNANDRPGA--YVALSNTLAAAGKWDSVTELREKMKL 481
             N + K + N  PG   Y  + + +   G  D      E+M L
Sbjct: 553 YFNSM-KRDYNINPGIEHYGCILDLIGRTGNLDHAKNFIEEMPL 595



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 98/356 (27%), Positives = 175/356 (49%), Gaps = 11/356 (3%)

Query: 76  VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVR 135
           V+ N+    + L  +++ G +K A  +F+ + Q     +N MI G++ NG   +++    
Sbjct: 56  VERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYH 115

Query: 136 KLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDS 195
           ++   G R D +T+  ++KA   C     L    G  VH +++K  +  D  +  +L+  
Sbjct: 116 RMEFGGVRGDNFTYPFVIKA---CGGLYDLAE--GERVHGKVIKSGLDLDIYIGNSLIIM 170

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMI 255
           Y K G    A +VF  M  ++++   SMISG++S G    +   FR+     I +    +
Sbjct: 171 YAKIGCIESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSV 230

Query: 256 EGY--SISIET-ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ 312
            G   + S+E   R   E+HCQ++++    DV + ++LVDMYAKCG++D A R+FD +  
Sbjct: 231 IGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITD 290

Query: 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNYVTFLGALSACGHAGLVDKGRE 371
           K++  W +MI GY  N    ++      MQE   + P+++T +  L  C     +  G+ 
Sbjct: 291 KSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKS 350

Query: 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
           +     R+    P +     +VD+ G  G L+ A     +M E+ N   W A+++S
Sbjct: 351 VHGFAIRN-GFLPHLVLETALVDMYGECGKLKPAECLFGQMNER-NLISWNAMIAS 404



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 70/304 (23%), Positives = 136/304 (44%), Gaps = 43/304 (14%)

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
           N   PRN  R   A+  + +   D +L   +        KT+ ++     ++E+N +  T
Sbjct: 12  NSKRPRNASREKRARTPQTNPDTDLILKPRIF-------KTARSKRNQSFLVERNSVSLT 64

Query: 222 SMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEG------------------------ 257
             +S ++ +G++++A ++F    + D  ++N MI G                        
Sbjct: 65  RALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHRMEFGGVRG 124

Query: 258 ----YSISIETA------RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVF 307
               Y   I+         +   VH ++IK+    D+ +G++L+ MYAK G I+ A  VF
Sbjct: 125 DNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVF 184

Query: 308 DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367
             M  +++ +W SMI GY   G+  ++L  F  MQ   ++ +  + +G L AC   G + 
Sbjct: 185 REMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGACSLEGFLR 244

Query: 368 KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
            G+EI   M R   ++  +     +VD+  + G ++ A +   ++ +K +   W A++  
Sbjct: 245 NGKEIHCQMMRS-RLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDK-SIVAWNAMIGG 302

Query: 428 CRLH 431
             L+
Sbjct: 303 YSLN 306



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/114 (28%), Positives = 60/114 (52%), Gaps = 1/114 (0%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           AT++ S L  Y    +     +IH ++TK  +  NT +S  ++ ++ KCG L  A ++FD
Sbjct: 430 ATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIFD 489

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF-SMILKAST 157
            +  + + ++N +I  Y  +G    S+ L  ++   G  P+G TF S++L  S 
Sbjct: 490 RMTFKDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLLLSCSV 543


>gi|125597850|gb|EAZ37630.1| hypothetical protein OsJ_21964 [Oryza sativa Japonica Group]
          Length = 583

 Score =  270 bits (691), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 143/448 (31%), Positives = 261/448 (58%), Gaps = 12/448 (2%)

Query: 50  SALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQR 109
           +A+   I     + G ++HA +     +P   +  +L+ ++++CGAL  A  + D +P+R
Sbjct: 15  AAITACIERRALWEGRQVHARMITARYRPAVFLGTRLVTMYVRCGALDDARNVLDRMPER 74

Query: 110 TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL 169
           ++ ++  MI+GY +  +  E+L L  K++ +G  P+ YT + +L   T C    P     
Sbjct: 75  SVVSWTTMISGYSQTERHVEALDLFIKMLRAGCIPNEYTLATVL---TSCSG--PQSIYQ 129

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           G+ VH+ ++K + ++   + ++L+D Y K      AR VFD + E++V+  T++ISG+  
Sbjct: 130 GKQVHSLLVKTNFESHMFVGSSLLDMYAKSENIQEARRVFDTLPERDVVSCTAIISGYAQ 189

Query: 230 QGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
           +G  E+A ++FR+   + +    V +  ++   S  + +     +VH  +++      V 
Sbjct: 190 KGLDEEALDLFRQLYSEGMQCNHVTFTTLVTALS-GLASLDYGKQVHALILRKELPFFVA 248

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           L ++L+DMY+KCGK+  +RRVFD+M +++V +W +M+ GYG++G  ++ + LF  + +  
Sbjct: 249 LQNSLIDMYSKCGKLLYSRRVFDNMLERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKE- 307

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
           V+P+ VT L  LS C H GLVD+G +IF+++ ++ S      HY C++DLLGR+G LE+A
Sbjct: 308 VKPDSVTLLAVLSGCSHGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKA 367

Query: 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465
           L  +  MP +    +W +LL +CR+H +V +  + A ++ ++   +  G YV LSN  AA
Sbjct: 368 LNLIENMPFESTPSIWGSLLGACRVHANVHVGELVAQKLLEMEPEN-AGNYVILSNIYAA 426

Query: 466 AGKWDSVTELREKMKLRGVLKDTGCSWV 493
           AG W  V ++R+ M  + V K+ G SW+
Sbjct: 427 AGMWKDVFKVRKLMLEKTVTKEPGQSWI 454



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 82/306 (26%), Positives = 151/306 (49%), Gaps = 42/306 (13%)

Query: 33  LQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLK 92
           + N  +L+  LT+ S P ++         + G ++H+ + KT  + +  +   LL ++ K
Sbjct: 108 IPNEYTLATVLTSCSGPQSI---------YQGKQVHSLLVKTNFESHMFVGSSLLDMYAK 158

Query: 93  CGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
              ++ A ++FD LP+R + +   +I+GY + G  EE+L L R+L S G + +  TF+ +
Sbjct: 159 SENIQEARRVFDTLPERDVVSCTAIISGYAQKGLDEEALDLFRQLYSEGMQCNHVTFTTL 218

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           + A +   S      + G+ VHA IL+ ++     L  +L+D Y K GK  Y+R VFD M
Sbjct: 219 VTALSGLAS-----LDYGKQVHALILRKELPFFVALQNSLIDMYSKCGKLLYSRRVFDNM 273

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFR---KTVEKDIVVYNAMIEGYSISIETARKAL 269
           LE++V+   +M+ G+   G   +   +F+   K V+ D V   A++ G S          
Sbjct: 274 LERSVVSWNAMLMGYGRHGLGHEVISLFKDLHKEVKPDSVTLLAVLSGCS---------- 323

Query: 270 EVHCQLIK---NVFFEDVKLGSAL---------VDMYAKCGKIDDARRVFDHMQ-QKNVF 316
             H  L+    ++F   VK  SAL         +D+  + G+++ A  + ++M  +    
Sbjct: 324 --HGGLVDEGLDIFDTVVKEQSALLHTGHYGCIIDLLGRSGRLEKALNLIENMPFESTPS 381

Query: 317 TWTSMI 322
            W S++
Sbjct: 382 IWGSLL 387


>gi|86439692|emb|CAJ19324.1| selenium binding protein [Triticum aestivum]
          Length = 624

 Score =  270 bits (691), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 148/438 (33%), Positives = 248/438 (56%), Gaps = 12/438 (2%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           KIHAH+  +    +  +   L+ ++ KC ++  A  +FD++ ++ + ++  +IAGY +N 
Sbjct: 72  KIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMRRKDMVSWTSLIAGYAQND 131

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              E++ L+  ++    +P+G+TF+ +LKA+     +       GR +HA  +KC    D
Sbjct: 132 MPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADS-----GTGRQIHALAVKCGWHED 186

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEIFR 241
             + +AL+D Y + GK   A  VFD +  KN +   ++ISGF  +G  E A     E+ R
Sbjct: 187 VYVGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLR 246

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
              E     Y+++    +  +    +   VH  +IK+       +G+ L+DMYAK G + 
Sbjct: 247 NGFEATHFTYSSVFSSIA-RLGALEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMI 305

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           DAR+VFD +  K++ TW SM+  + + G   +A+  F  M++  V  N +TFL  L+AC 
Sbjct: 306 DARKVFDRVDNKDLVTWNSMLTAFAQYGLGKEAVSHFEEMRKSGVYLNQITFLCILTACS 365

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
           H GLV +G+  FE M ++Y ++P+++HY  +V LLGRAG L  AL F+ +MP +P + VW
Sbjct: 366 HGGLVKEGKRYFEMM-KEYDLEPEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVW 424

Query: 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
            ALL++CR+H + ++   AA+ +F+L+ +D  G  V L N  A+ G+WD+   +R  MK 
Sbjct: 425 GALLAACRMHKNAKVGQFAADHVFELDPDD-SGPPVLLYNIYASTGQWDAAARVRMMMKT 483

Query: 482 RGVLKDTGCSWVGTESGL 499
            GV K+  CSWV  E+ +
Sbjct: 484 TGVKKEPACSWVEMENSV 501



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 128/264 (48%), Gaps = 11/264 (4%)

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
            R +HA +       D  L  +L+  Y K      AR VFD M  K+++  TS+I+G+  
Sbjct: 70  ARKIHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVFDQMRRKDMVSWTSLIAGYAQ 129

Query: 230 QGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
                +A      + +   + +   + ++++      ++     ++H   +K  + EDV 
Sbjct: 130 NDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSG-TGRQIHALAVKCGWHEDVY 188

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           +GSAL+DMYA+CGK+D A  VFD +  KN  +W ++I G+ + G+   AL  F  M    
Sbjct: 189 VGSALLDMYARCGKMDMATAVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNG 248

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA--CMVDLLGRAGSLE 403
            +  + T+    S+    G +++G+ +   + +    + K+  +    ++D+  ++GS+ 
Sbjct: 249 FEATHFTYSSVFSSIARLGALEQGKWVHAHVIKS---RQKLTAFVGNTLLDMYAKSGSMI 305

Query: 404 QALKFVLEMPEKPNSDVWAALLSS 427
            A K V +  +  +   W ++L++
Sbjct: 306 DARK-VFDRVDNKDLVTWNSMLTA 328



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/246 (28%), Positives = 115/246 (46%), Gaps = 12/246 (4%)

Query: 250 VYNAMIEG--YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVF 307
           VY + I     S ++E ARK   +H  L  + F  D  L ++L+ MY KC  + DAR VF
Sbjct: 53  VYRSFITACAQSKNLEDARK---IHAHLGSSRFAGDAFLDNSLIHMYCKCRSVLDARNVF 109

Query: 308 DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367
           D M++K++ +WTS+I GY +N  P +A+ L   M +   +PN  TF   L A G      
Sbjct: 110 DQMRRKDMVSWTSLIAGYAQNDMPVEAIGLLPGMLKGRFKPNGFTFASLLKAAGAYADSG 169

Query: 368 KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
            GR+I  ++         +   + ++D+  R G ++ A   V +  +  N   W AL+S 
Sbjct: 170 TGRQI-HALAVKCGWHEDVYVGSALLDMYARCGKMDMATA-VFDKLDSKNGVSWNALISG 227

Query: 428 CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA-----AAGKWDSVTELREKMKLR 482
                D E A +   E+ +         Y ++ +++A       GKW     ++ + KL 
Sbjct: 228 FARKGDGESALMTFAEMLRNGFEATHFTYSSVFSSIARLGALEQGKWVHAHVIKSRQKLT 287

Query: 483 GVLKDT 488
             + +T
Sbjct: 288 AFVGNT 293



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/202 (27%), Positives = 96/202 (47%), Gaps = 8/202 (3%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           N  T  SL  A   Y +S T   G +IHA   K G   +  +   LL ++ +CG +  A 
Sbjct: 151 NGFTFASLLKAAGAYADSGT---GRQIHALAVKCGWHEDVYVGSALLDMYARCGKMDMAT 207

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
            +FD+L  +   ++N +I+G+ + G  E +L    +++ +G     +T+S +   S+  R
Sbjct: 208 AVFDKLDSKNGVSWNALISGFARKGDGESALMTFAEMLRNGFEATHFTYSSVF--SSIAR 265

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
                    G+ VHA ++K   K    +   L+D Y K G    AR VFD +  K+++  
Sbjct: 266 LGA---LEQGKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTW 322

Query: 221 TSMISGFMSQGFVEDAEEIFRK 242
            SM++ F   G  ++A   F +
Sbjct: 323 NSMLTAFAQYGLGKEAVSHFEE 344



 Score = 45.1 bits (105), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 39/164 (23%), Positives = 79/164 (48%), Gaps = 6/164 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +HAH+ K+  K    +   LL ++ K G++  A ++FD +  + L  +N M+  + +
Sbjct: 272 GKWVHAHVIKSRQKLTAFVGNTLLDMYAKSGSMIDARKVFDRVDNKDLVTWNSMLTAFAQ 331

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G  +E++S   ++  SG   +  TF  IL   T C S+  L +  G+     + + D++
Sbjct: 332 YGLGKEAVSHFEEMRKSGVYLNQITFLCIL---TAC-SHGGLVKE-GKRYFEMMKEYDLE 386

Query: 184 ADDVLYTALVDSYVKGGKTSYARI-VFDMMLEKNVICSTSMISG 226
            +   Y  +V    + G  +YA + +F M +E       ++++ 
Sbjct: 387 PEIDHYVTVVALLGRAGLLNYALVFIFKMPMEPTAAVWGALLAA 430


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 158/435 (36%), Positives = 256/435 (58%), Gaps = 12/435 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H    K     +  + I LL L+ K G +  A Q F+E+P+  L  ++ MI+ Y +
Sbjct: 224 GKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQ 283

Query: 124 NGQVEESLSLV-RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           + + +E+L L  R   SS   P+ +TF+ +L+A   C S V L  NLG  +H+ +LK  +
Sbjct: 284 SDKSKEALELFCRMRQSSVVVPNNFTFASVLQA---CASLVLL--NLGNQIHSCVLKVGL 338

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            ++  +  AL+D Y K G+   +  +F    EKN +   ++I G++  G  E A  +F  
Sbjct: 339 DSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSN 398

Query: 243 TVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
            +  DI    V Y++++   S S+       ++H   IK ++ +D  + ++L+DMYAKCG
Sbjct: 399 MLGLDIQPTEVTYSSVLRA-SASLVALEPGRQIHSLTIKTMYNKDSVVANSLIDMYAKCG 457

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           +IDDAR  FD M +++  +W ++I GY  +G   +AL LF MMQ+   +PN +TF+G LS
Sbjct: 458 RIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLS 517

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC +AGL+DKGR  F+SM +DY ++P +EHY CMV LLGR+G  ++A+K + E+P +P+ 
Sbjct: 518 ACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSV 577

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            VW ALL +C +H ++++  + A  + ++   D    +V LSN  A A +WD+V  +R+ 
Sbjct: 578 MVWRALLGACVIHKNLDLGKVCAQRVLEMEPQD-DATHVLLSNMYATAKRWDNVAYVRKN 636

Query: 479 MKLRGVLKDTGCSWV 493
           MK + V K+ G SWV
Sbjct: 637 MKKKKVKKEPGLSWV 651



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 108/417 (25%), Positives = 193/417 (46%), Gaps = 36/417 (8%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           + + S  + LQ  I +  P  G  +H HI K G   +      LL  ++  G L+ A ++
Sbjct: 1   MDSHSYANMLQQAIRNRDPNAGKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKL 60

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK-------A 155
           FDE+P     ++  +  G+ ++ Q + +  L+ +L   G   + + F+ +LK       A
Sbjct: 61  FDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLA 120

Query: 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
            TC              VHA + K   +AD  + TAL+D+Y   G    AR VFD +  K
Sbjct: 121 DTCLS------------VHAYVYKLGHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFK 168

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS--------IETARK 267
           +++  T M++ +      ED+  +F    +  I+ Y      ++IS        +E  + 
Sbjct: 169 DMVSWTGMVACYAENYCHEDSLLLF---CQMRIMGYRP--NNFTISAALKSCNGLEAFKV 223

Query: 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
              VH   +K  +  D+ +G AL+++Y K G+I +A++ F+ M + ++  W+ MI  Y +
Sbjct: 224 GKSVHGCALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQ 283

Query: 328 NGNPNQALELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM 386
           +    +ALELFC M Q   V PN  TF   L AC    L++ G +I   + +   +   +
Sbjct: 284 SDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLK-VGLDSNV 342

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS-CRLHDDVEMANIAAN 442
                ++D+  + G +E ++K      EK N   W  ++    +L D  +  N+ +N
Sbjct: 343 FVSNALMDVYAKCGEIENSVKLFTGSTEK-NEVAWNTIIVGYVQLGDGEKALNLFSN 398


>gi|297804786|ref|XP_002870277.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297316113|gb|EFH46536.1| hypothetical protein ARALYDRAFT_493409 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 684

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 162/491 (32%), Positives = 254/491 (51%), Gaps = 32/491 (6%)

Query: 9   SSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIH 68
           +++F     R   + P + TFP   +   SL  P+T                   G +IH
Sbjct: 91  TALFEFFEMRREGVAPNDFTFPCVFKAVASLRLPVT-------------------GKQIH 131

Query: 69  AHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVE 128
           A   K G   +  +      ++ K      A ++FDE+P+R L  +N  I+  + +G+ +
Sbjct: 132 ALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAYISNSVTDGRPK 191

Query: 129 ESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVL 188
           E++    +    G +P+  TF   L A   C   + L  +LG  +H  + +     D  +
Sbjct: 192 EAIEAFIEFRRIGGQPNSITFCGFLNA---CSDGLLL--DLGMQMHGLVFRSGFDTDVSV 246

Query: 189 YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI 248
           Y  L+D Y K  +   + I+F  M  KN +   S+++ ++     E A  ++ ++  K+I
Sbjct: 247 YNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEKASVLYLRS-RKEI 305

Query: 249 VVYNAMIEGYSISIETARKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDAR 304
           V  +  +    +S       LE    +H   +K     ++ +GSALVDMY KCG I+D+ 
Sbjct: 306 VETSDFMISSVLSACAGMAGLELGRSIHAHAVKACVERNIFVGSALVDMYGKCGCIEDSE 365

Query: 305 RVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM--QECCVQPNYVTFLGALSACGH 362
           + FD M +KN+ T  S+I GY   G  + AL LF  M  + C   PNY+TF+  LSAC  
Sbjct: 366 QAFDEMPEKNLVTLNSLIGGYAHQGQVDMALALFEDMAPRGCGPAPNYMTFVSLLSACSR 425

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
           AG V+ G +IF+SM+  Y ++P  EHY+C+VD+LGRAG +EQA +F+ +MP KP   VW 
Sbjct: 426 AGAVENGMKIFDSMKSTYGIEPGAEHYSCIVDMLGRAGMVEQAFEFIKKMPIKPTISVWG 485

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
           AL ++CR+H    +  +AA  +FKL+  D  G +V LSNT AAAG+W     +RE+MK  
Sbjct: 486 ALQNACRMHGKPHLGILAAENLFKLDPKD-SGNHVLLSNTFAAAGRWAEANTVREEMKGV 544

Query: 483 GVLKDTGCSWV 493
           G+ K  G SW+
Sbjct: 545 GIKKGAGYSWI 555



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 113/454 (24%), Positives = 206/454 (45%), Gaps = 33/454 (7%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLI-LHLKCGALKYAGQ 101
           LTA +L   L++ I++ +   G  +HA I KT   P        LI ++ K    + A  
Sbjct: 4   LTADALGLLLKNAISTSSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARL 63

Query: 102 MFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161
           +    P R + ++  +++G  +NG    +L    ++   G  P+ +TF  + KA    R 
Sbjct: 64  VLRLTPARNVVSWTSLVSGLAQNGHFSTALFEFFEMRREGVAPNDFTFPCVFKAVASLR- 122

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
              LP   G+ +HA  +KC    D  +  +  D Y K      AR +FD + E+N+    
Sbjct: 123 ---LPVT-GKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWN 178

Query: 222 SMISGFMSQGFVEDAEEIF----RKTVEKDIVVY----NAMIEGYSISIETARKALEVHC 273
           + IS  ++ G  ++A E F    R   + + + +    NA  +G  + +      +++H 
Sbjct: 179 AYISNSVTDGRPKEAIEAFIEFRRIGGQPNSITFCGFLNACSDGLLLDL-----GMQMHG 233

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
            + ++ F  DV + + L+D Y KC +I  +  +F  M  KN  +W S++  Y +N    +
Sbjct: 234 LVFRSGFDTDVSVYNGLIDFYGKCKQIRSSEIIFAEMGMKNAVSWCSLVAAYVQNHEDEK 293

Query: 334 ALELFCMMQECCVQPNYVTFLGALSAC-GHAGLVDKGREIFESMERDYSMKPKMEHY--- 389
           A  L+   ++  V+ +       LSAC G AGL + GR I       +++K  +E     
Sbjct: 294 ASVLYLRSRKEIVETSDFMISSVLSACAGMAGL-ELGRSI-----HAHAVKACVERNIFV 347

Query: 390 -ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
            + +VD+ G+ G +E + +   EMPEK N     +L+        V+MA     ++    
Sbjct: 348 GSALVDMYGKCGCIEDSEQAFDEMPEK-NLVTLNSLIGGYAHQGQVDMALALFEDMAPRG 406

Query: 449 ANDRPG--AYVALSNTLAAAGKWDSVTELREKMK 480
               P    +V+L +  + AG  ++  ++ + MK
Sbjct: 407 CGPAPNYMTFVSLLSACSRAGAVENGMKIFDSMK 440


>gi|147856457|emb|CAN80769.1| hypothetical protein VITISV_013866 [Vitis vinifera]
          Length = 761

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 160/458 (34%), Positives = 266/458 (58%), Gaps = 53/458 (11%)

Query: 76  VKPNTNI--SIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL 133
           V P  N+     ++  + K   L+ A + FD +P+R++ ++N M++GY +NG  EE L L
Sbjct: 188 VMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRL 247

Query: 134 VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA-QI-LKCDVKADDVLYTA 191
             ++V++G  PD  T+  ++ A +  R +  L  +L R +H  QI L C V+      TA
Sbjct: 248 FDEMVNAGIEPDETTWVTVISACSS-RGDPCLAASLVRTLHQKQIQLNCFVR------TA 300

Query: 192 LVDSYVKGGKTSYARIVFDMM-LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV 250
           L+D Y K G    AR +FD +   +N +   +MIS +   G ++ A E+F     +++V 
Sbjct: 301 LLDMYAKCGSIGAARRIFDELGAYRNSVTWNAMISAYTRVGNLDSARELFNTMPGRNVVT 360

Query: 251 YNAMIEGYS------ISIE------TARK-------------------ALEVHCQLIKNV 279
           +N+MI GY+      ++IE      TA+K                   ALE+   +++ +
Sbjct: 361 WNSMIAGYAQNGQSAMAIELFKEMITAKKLTPDEVTMVSVISACGHLGALELGNWVVRFL 420

Query: 280 FFEDVKLG----SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
               +KL     +A++ MY++CG ++DA+RVF  M  ++V ++ ++I G+  +G+  +A+
Sbjct: 421 TENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEAI 480

Query: 336 ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDL 395
            L   M+E  ++P+ VTF+G L+AC HAGL+++GR++FES++      P ++HYACMVDL
Sbjct: 481 NLMSTMKEGGIEPDRVTFIGVLTACSHAGLLEEGRKVFESIK-----DPAIDHYACMVDL 535

Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA 455
           LGR G LE A + +  MP +P++ V+ +LL++ R+H  VE+  +AAN++F+L   D  G 
Sbjct: 536 LGRVGELEDAKRTMERMPMEPHAGVYGSLLNASRIHKQVELGELAANKLFELEP-DNSGN 594

Query: 456 YVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           ++ LSN  A+AG+W  V  +RE MK  GV K TG SWV
Sbjct: 595 FILLSNIYASAGRWKDVERIREAMKKGGVKKTTGWSWV 632



 Score =  105 bits (261), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 91/407 (22%), Positives = 172/407 (42%), Gaps = 64/407 (15%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALK----YAGQMFDELPQRTLSAYNYMIAGY 121
           ++HA I    +  + N  + LLI H  C  L+    Y   +F+      +  +  M+  Y
Sbjct: 19  QLHAQIIHNSLHHH-NYWVALLINH--CTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRFY 75

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
                  + + +   +   G RPD + + +++K++           N G   HA +LK  
Sbjct: 76  SHLQDHAKVVLMFEHMQGCGVRPDAFVYPILIKSAG----------NGGIGFHAHVLKLG 125

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMM--LEKNVICSTSMISGFMSQGFVEDAEEI 239
             +D  +  A++D Y + G   +AR VFD +   E+ V    +M+SG+        A+ +
Sbjct: 126 HGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWL 185

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           F    E++++ + AM+ GY                                    AK   
Sbjct: 186 FDVMPERNVITWTAMVTGY------------------------------------AKVKD 209

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ++ ARR FD M +++V +W +M+ GY +NG   + L LF  M    ++P+  T++  +SA
Sbjct: 210 LEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEVLRLFDEMVNAGIEPDETTWVTVISA 269

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C   G       +  ++ +   ++        ++D+  + GS+  A +   E+    NS 
Sbjct: 270 CSSRGDPCLAASLVRTLHQK-QIQLNCFVRTALLDMYAKCGSIGAARRIFDELGAYRNSV 328

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
            W A++S+     +++    +A E+F    N  PG  V   N++ A 
Sbjct: 329 TWNAMISAYTRVGNLD----SARELF----NTMPGRNVVTWNSMIAG 367



 Score = 51.6 bits (122), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 107/249 (42%), Gaps = 49/249 (19%)

Query: 71  ITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEES 130
           +T+  +K + +    ++ ++ +CG+++ A ++F E+  R + +YN +I+G+  +G   E+
Sbjct: 420 LTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEA 479

Query: 131 LSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT 190
           ++L+  +   G  PD  TF  +L A +                HA +L+   K  + +  
Sbjct: 480 INLMSTMKEGGIEPDRVTFIGVLTACS----------------HAGLLEEGRKVFESIKD 523

Query: 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV 250
             +D Y                          M+      G +EDA    ++T+E+  + 
Sbjct: 524 PAIDHY------------------------ACMVDLLGRVGELEDA----KRTMERMPME 555

Query: 251 YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSA----LVDMYAKCGKIDDARRV 306
            +A + G  ++     K +E+  +L  N  FE     S     L ++YA  G+  D  R+
Sbjct: 556 PHAGVYGSLLNASRIHKQVEL-GELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERI 614

Query: 307 FDHMQQKNV 315
            + M++  V
Sbjct: 615 REAMKKGGV 623


>gi|147832325|emb|CAN66581.1| hypothetical protein VITISV_030261 [Vitis vinifera]
          Length = 622

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 156/463 (33%), Positives = 245/463 (52%), Gaps = 44/463 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLLIL--HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           +IH  + KTG+  +   + KLL        G+L YA  +FD + +     +N MI GY  
Sbjct: 36  QIHGQMLKTGLILDEIPASKLLAFCASPNSGSLAYARTVFDRIFRPNTFMWNTMIRGYSN 95

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           + + EE+L L   ++      + YTF  +LKA +   ++        + +HA I+K    
Sbjct: 96  SKEPEEALLLYHHMLYHSVPHNAYTFPFLLKACSSMSASEET-----QQIHAHIIKMGFG 150

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           ++     +L++ Y K G    AR++FD + +++ +   SMI G+   G +E A EIF   
Sbjct: 151 SEIYTTNSLLNVYSKSGDIKSARLLFDQVDQRDTVSWNSMIDGYTKCGEIEMAYEIFNHM 210

Query: 244 VEKDIVVYNAMIEGYSISIETARKALE--------------------------------- 270
            E++I+ + +MI G  +     ++AL                                  
Sbjct: 211 PERNIISWTSMISG-CVGAGKPKEALNLFHRMQTAGIKLDNVALVSTLQACADLGVLDQG 269

Query: 271 --VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
             +H  + K+    D  LG  L+DMYAKCG +++A  VF  M++K V  WT+MI GY  +
Sbjct: 270 KWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEVFRKMEEKGVSVWTAMISGYAIH 329

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G   +ALE F  MQ   V+PN +TF G L+AC HAGLV + + +FESMER +  KP +EH
Sbjct: 330 GRGREALEWFMKMQTAGVEPNQMTFTGILTACSHAGLVHEAKLLFESMERIHGFKPSIEH 389

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
           Y CMVDLLGRAG L++A + +  MP KPN+ +W ALL++C +H ++E+       + +++
Sbjct: 390 YGCMVDLLGRAGLLKEAEELIENMPVKPNAAIWGALLNACHIHGNLELGKQIGKILIQVD 449

Query: 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
                G Y+ L++  AAAG+W+    +R +MK +GV K  GCS
Sbjct: 450 PG-HGGRYIHLASIHAAAGEWNQAARVRRQMKEQGVSKLPGCS 491



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 63/115 (54%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L   +L S LQ   +      G  IHA+I K  ++ +  +   L+ ++ KCG L+ A ++
Sbjct: 248 LDNVALVSTLQACADLGVLDQGKWIHAYIKKHEIEIDPILGCVLIDMYAKCGDLEEAIEV 307

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           F ++ ++ +S +  MI+GY  +G+  E+L    K+ ++G  P+  TF+ IL A +
Sbjct: 308 FRKMEEKGVSVWTAMISGYAIHGRGREALEWFMKMQTAGVEPNQMTFTGILTACS 362


>gi|147766033|emb|CAN70212.1| hypothetical protein VITISV_038740 [Vitis vinifera]
          Length = 724

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 152/441 (34%), Positives = 250/441 (56%), Gaps = 13/441 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLI-LHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G  +HAH+  +    N  +   +++ ++ KCG L  A +MFDE+P + +  +  +IAG+ 
Sbjct: 106 GRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDEMPTKDMVTWTALIAGFS 165

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +N +  ++L L  +++  G +P+ +T S +LKAS       P     G  +HA  LK   
Sbjct: 166 QNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDP-----GTQLHAFCLKYGY 220

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-- 240
           ++   + +ALVD Y + G    A++ FD M  K+ +   ++ISG   +G  E A  +   
Sbjct: 221 QSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARKGEGEHALHLLWK 280

Query: 241 --RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
             RK  +     Y+++    + SI    +   VH  +IK+       +G+ L+DMYAK G
Sbjct: 281 MQRKNFQPTHFTYSSVFSACA-SIGALEQGKWVHAHMIKSGLKLIAFIGNTLLDMYAKAG 339

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            IDDA+RVFD + + +V +W +M+ G  ++G   + L+ F  M    ++PN ++FL  L+
Sbjct: 340 SIDDAKRVFDRLVKPDVVSWNTMLTGCAQHGLGKETLDRFEQMLRIGIEPNEISFLCVLT 399

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC H+GL+D+G   FE M++ Y ++P + HY   VDLLGR G L++A +F+ EMP +P +
Sbjct: 400 ACSHSGLLDEGLYYFELMKK-YKVEPDVPHYVTFVDLLGRVGLLDRAERFIREMPIEPTA 458

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            VW ALL +CR+H ++E+   AA   F+L+ +D  G  + LSN  A+AG+W  V ++R+ 
Sbjct: 459 AVWGALLGACRMHKNMELGVYAAERAFELDPHDS-GPRMLLSNIYASAGRWRDVAKVRKM 517

Query: 479 MKLRGVLKDTGCSWVGTESGL 499
           MK  GV K   CSWV  E+ +
Sbjct: 518 MKESGVKKQPACSWVEIENAV 538



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 132/287 (45%), Gaps = 49/287 (17%)

Query: 188 LYTALVDSYVKGGKTSYARIVFDMM-----LEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           LY+ L+    + GK    RIV   +     L+ +++    +++ +   G ++DA  +F +
Sbjct: 89  LYSKLLKECTRLGKVEQGRIVHAHLVDSHFLDNHLVLQNIIVNMYAKCGCLDDARRMFDE 148

Query: 243 TVEKDIVVYNAMIEGYS------------------------ISIETARKA---------- 268
              KD+V + A+I G+S                         ++ +  KA          
Sbjct: 149 MPTKDMVTWTALIAGFSQNNRPRDALLLFPQMLRLGLQPNHFTLSSLLKASGSEHGLDPG 208

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
            ++H   +K  +   V +GSALVDMYA+CG +D A+  FD M  K+  +W ++I G+ + 
Sbjct: 209 TQLHAFCLKYGYQSSVYVGSALVDMYARCGHMDAAQLAFDGMPTKSEVSWNALISGHARK 268

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G    AL L   MQ    QP + T+    SAC   G +++G+ +   M     +K  ++ 
Sbjct: 269 GEGEHALHLLWKMQRKNFQPTHFTYSSVFSACASIGALEQGKWVHAHM-----IKSGLKL 323

Query: 389 YA----CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
            A     ++D+  +AGS++ A K V +   KP+   W  +L+ C  H
Sbjct: 324 IAFIGNTLLDMYAKAGSIDDA-KRVFDRLVKPDVVSWNTMLTGCAQH 369


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 145/437 (33%), Positives = 241/437 (55%), Gaps = 11/437 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH+H+ +  +  N  +   +  ++++CG L+ A  +FD +  +    +  ++ GY +
Sbjct: 207 GKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQ 266

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
             ++E +L L  ++   G   D + FS++LK   CC        ++GR +H+ I+K   +
Sbjct: 267 AKKLEVALELFARMAMEGVELDEFVFSIVLK--VCCGLE---DWDMGRQIHSHIVKLGAE 321

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           ++  + T LVD YVK G    A   F  + E N +  +++ISGF   G +ED  +IF  +
Sbjct: 322 SEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIF-TS 380

Query: 244 VEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           +  + VV N+ I         A+  L    + H   IK      +   SA+V MY+KCG+
Sbjct: 381 LRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGR 440

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +D ARR F+ + + +   WT++I GY  +GN  +AL  F  MQ   V+PN VTF+  L+A
Sbjct: 441 LDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTA 500

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H+GLV + ++   SM RDY +KP ++HY CM+D   RAG L++AL+ +  MP +P++ 
Sbjct: 501 CSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLQEALELINRMPFEPDAM 560

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
            W +LL  C  H D+++  IAA  +F+L+  D  G Y+ L N  +A GKW+    +R+ M
Sbjct: 561 SWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAG-YILLFNLYSAFGKWEEAGHVRKLM 619

Query: 480 KLRGVLKDTGCSWVGTE 496
             R + K+  CSW+  +
Sbjct: 620 AERELKKEVSCSWISVK 636



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 192/379 (50%), Gaps = 14/379 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH  + +T   P+ +I   LL ++  CG+     ++FDE+  + L ++  +I+ Y K
Sbjct: 106 GRLIHDRLRRTVKNPSGSIENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAK 165

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG++E+++ L   + +SG RP+   +  +L++   C    P    LG+ +H+ +++  + 
Sbjct: 166 NGELEKAIRLFSDMQASGIRPNSAVYMSLLQS---CLG--PSFLELGKQIHSHVIRAQLN 220

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           A+  + TA+ + YV+ G    A++VFD M  +N +  T ++ G+     +E A E+F + 
Sbjct: 221 ANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARM 280

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               VE D  V++ +++     +E      ++H  ++K     +V +G+ LVD Y KCG 
Sbjct: 281 AMEGVELDEFVFSIVLK-VCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGD 339

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I+ A R F  + + N  +W+++I G+ ++G     +++F  ++   V  N   +     A
Sbjct: 340 IESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQA 399

Query: 360 CGHAGLVDKGREIF-ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           C     ++ G +   ++++R   +   +   + MV +  + G L+ A +   E  ++P++
Sbjct: 400 CAAQANLNMGSQAHGDAIKR--GLVSYLYGESAMVTMYSKCGRLDYARR-AFESIDEPDA 456

Query: 419 DVWAALLSSCRLHDDVEMA 437
             W A++S    H +   A
Sbjct: 457 VAWTAIISGYAYHGNAAEA 475



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 93/200 (46%), Gaps = 7/200 (3%)

Query: 230 QGFVEDAEEIFRKTVEKDIVV----YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
           QG +++A +  ++  + D+ V    Y  + E     + +      +H +L + V      
Sbjct: 65  QGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACG-KLRSLADGRLIHDRLRRTVKNPSGS 123

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           + + L+ MY  CG   D ++VFD M  KN+ +W  +I  Y KNG   +A+ LF  MQ   
Sbjct: 124 IENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASG 183

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
           ++PN   ++  L +C     ++ G++I   + R   +   +     + ++  R G LE A
Sbjct: 184 IRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIR-AQLNANITVETAICNMYVRCGWLEGA 242

Query: 406 LKFVLEMPEKPNSDVWAALL 425
            K V +  +  N+  W  L+
Sbjct: 243 -KLVFDGMDAQNAVTWTGLM 261


>gi|224124674|ref|XP_002330082.1| predicted protein [Populus trichocarpa]
 gi|222871507|gb|EEF08638.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 181/542 (33%), Positives = 269/542 (49%), Gaps = 87/542 (16%)

Query: 28  TFPPKLQNYD-SLSNPLTATSLPSALQHYIN--SDTPFYGLK-IHAHITKTGVKPNTNIS 83
             P  L + D S  N  T+      +   +N  S T  + LK +HA   +TG   +  +S
Sbjct: 6   NLPYHLASKDFSTENKFTSQLSQKTILDLLNTKSSTSLHHLKQVHAVALRTGHFQDHYVS 65

Query: 84  IKLLILHLKCGA------LKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL 137
             L+    KC A      L +A ++F+ +P   +  +N +I G L+N +  +++    K+
Sbjct: 66  GTLV----KCYANPHFSNLNFALKVFEYVPNPNVFVFNIIIKGCLQNNEPCKAICCYYKM 121

Query: 138 VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC----------------- 180
           + +  RP+ +T+  + KA T            G  VHA ++K                  
Sbjct: 122 MIAHARPNKFTYPTLFKACT-----AAEAAEEGVQVHAHVIKQGLSGDVHIRSAGIQMYG 176

Query: 181 --------------DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
                         D  +D + + A++D Y+K G+   A+ +F  M +KNV     M+SG
Sbjct: 177 SFGEVEGARRMLGEDGNSDVICFNAMIDGYLKCGEVEAAKELFWSMEDKNVGSWNVMVSG 236

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV--------------- 271
               G +E+A E+F +  EK+ + ++AMI+GY I     ++ALEV               
Sbjct: 237 MAKCGMIEEARELFNEMKEKNEISWSAMIDGY-IKGGYYKEALEVFNVMQREEIRPRKFV 295

Query: 272 --------------------HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311
                               H  +  N    D  LG+ALVDMYAKCG++D A  VF+ M+
Sbjct: 296 LSSVLAACANLGALDQGRWIHAYVNNNSNSFDAVLGTALVDMYAKCGRLDMAWDVFEKME 355

Query: 312 QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371
           +K VFTW +MI G G +G    A+ELF  MQ+   +PN +T LG LSAC H+G+VD+G  
Sbjct: 356 KKEVFTWNAMICGLGMHGRAEDAIELFFKMQKQKFRPNGITLLGVLSACAHSGMVDEGLR 415

Query: 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           IF SME  Y ++P MEHY C+VDLLGRAG L +A + +  MP +P++ VW ALL +CR H
Sbjct: 416 IFNSMEEVYGIEPGMEHYGCVVDLLGRAGLLGEAEEVMYSMPMEPSAAVWGALLGACRKH 475

Query: 432 DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
            DVE+       + +L   +  G Y  LSN  A AG+WD V  +R+ MK RGV   TG S
Sbjct: 476 GDVELGERVGKILLELEPQN-SGRYALLSNIYARAGRWDDVANVRKLMKERGVKTSTGIS 534

Query: 492 WV 493
            +
Sbjct: 535 MI 536


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 151/434 (34%), Positives = 250/434 (57%), Gaps = 12/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IHA+  K  +  N  I   L+ ++ KC  + YAG +FD++  + L ++  +IA Y +
Sbjct: 232 GKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQ 291

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N    E+L L+RK+ + G   D       L A +  R       +  + VH   LK  + 
Sbjct: 292 NNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRC-----LSHAKEVHGYTLKRGL- 345

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
           +D ++   ++D Y   G  +YA  +F+ +  K+V+  TSMIS ++  G   +A  +F   
Sbjct: 346 SDLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLM 405

Query: 241 -RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
              +VE D +   + I   + S+    K  E+H  + +  F  +    ++LVDMYA CG 
Sbjct: 406 KETSVEPDSITLVS-ILSAAASLSALNKGKEIHGFIFRKGFMLEGSTVNSLVDMYACCGS 464

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +++A +VF   + K++  WT+MI+ YG +G    A+ELF +M++  + P+++TFL  L A
Sbjct: 465 LENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITFLALLYA 524

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H+GL+++G+ + E+M+  Y ++P  EHYAC+VDLLGRA  LE+A  FV  M  +P ++
Sbjct: 525 CSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQIEPTAE 584

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW A L +CR+H + ++  IAA ++  L+  D PG+YV +SN  AA+G+W  V E+R +M
Sbjct: 585 VWCAFLGACRIHSNKKLGEIAAQKLLDLDP-DSPGSYVLISNVFAASGRWKDVEEVRMRM 643

Query: 480 KLRGVLKDTGCSWV 493
           K  G+ K+ GCSW+
Sbjct: 644 KGGGLKKNPGCSWI 657



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 130/443 (29%), Positives = 225/443 (50%), Gaps = 19/443 (4%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +L +ALQ   +S     G++IHA I K+    +  ++  L+ +H++ G + YA ++FDEL
Sbjct: 114 TLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDEL 173

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
            ++    +N MIAG+ +NG   E+L     L  +  +PD  +   IL AS   R    L 
Sbjct: 174 DEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASG--RLGYLLN 231

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
              G+ +HA  +K  + ++  +   L+D Y K    +YA +VFD M+ K++I  T++I+ 
Sbjct: 232 ---GKEIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAA 288

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETAR---KALEVHCQLIKNVFFED 283
           +       +A ++ RK   K + V   MI    ++    R    A EVH   +K     D
Sbjct: 289 YAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLKR-GLSD 347

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
           + + + ++D+YA CG I+ A R+F+ ++ K+V +WTSMI  Y  NG  N+AL +F +M+E
Sbjct: 348 LMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKE 407

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE 403
             V+P+ +T +  LSA      ++KG+EI   + R   M  +      +VD+    GSLE
Sbjct: 408 TSVEPDSITLVSILSAAASLSALNKGKEIHGFIFRKGFM-LEGSTVNSLVDMYACCGSLE 466

Query: 404 QALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR--PG--AYVAL 459
            A K V       +  +W  ++++  +H   +    AA E+F +  + +  P    ++AL
Sbjct: 467 NAYK-VFICTRSKSLVLWTTMINAYGMHGRGK----AAVELFSIMEDQKLIPDHITFLAL 521

Query: 460 SNTLAAAGKWDSVTELREKMKLR 482
               + +G  +    L E MK +
Sbjct: 522 LYACSHSGLINEGKRLLETMKCK 544



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 194/405 (47%), Gaps = 27/405 (6%)

Query: 39  LSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKY 98
           L  P  + + P  L+     +    G +IH  I K G      ++  L+ ++ KC  +  
Sbjct: 4   LGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILG 63

Query: 99  AGQMFDELPQRT-LSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           A ++FD + +R  + ++N +I+ Y  NGQ  E+L L R++  +G   + YT    L+A  
Sbjct: 64  ARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQA-- 121

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
           C  S+    + LG  +HA ILK +   D  +  ALV  +V+ GK SYA  +FD + EK+ 
Sbjct: 122 CEDSSF---KKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDN 178

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL-------E 270
           I   SMI+GF   G   +A + F    + ++      +    ISI  A   L       E
Sbjct: 179 ITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSL----ISILAASGRLGYLLNGKE 234

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           +H   +KN    ++++G+ L+DMY+KC  +  A  VFD M  K++ +WT++I  Y +N  
Sbjct: 235 IHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNC 294

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
             +AL+L   +Q   +  + +     L AC     +   +E+       Y++K  +    
Sbjct: 295 HTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEV-----HGYTLKRGLSDLM 349

Query: 391 ---CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHD 432
               ++D+    G++  A + + E  +  +   W +++ SC +H+
Sbjct: 350 MQNMIIDVYADCGNINYATR-MFESIKCKDVVSWTSMI-SCYVHN 392


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  270 bits (690), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 159/453 (35%), Positives = 252/453 (55%), Gaps = 13/453 (2%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +L S L+    +     G +IH  + K     +  +++ L+ ++ K G L  A ++FD +
Sbjct: 308 TLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEFVAVGLVDMYAKHGFLDDARKVFDFM 367

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD--GYTFSMILKASTCCRSNVP 164
           P+R L  +N +I+G   +G+  E LSL  ++   G   D    T + +LK++    +   
Sbjct: 368 PRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASVLKSTASSEAICH 427

Query: 165 LPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
                 R VHA   K  + +D  +   L+DSY K G+  YA  VF      ++I ST+M+
Sbjct: 428 T-----RQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMM 482

Query: 225 SGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVF 280
           +        EDA ++F    RK +E D  V ++++   + S+    +  +VH  LIK  F
Sbjct: 483 TALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACT-SLSAYEQGKQVHAHLIKRQF 541

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             DV  G+ALV  YAKCG I+DA   F  + ++ + +W++MI G  ++G+  +AL+LF  
Sbjct: 542 TSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHR 601

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           M +  V PN++T    LSAC HAGLVD  ++ FESM+  + +    EHYACM+D+LGRAG
Sbjct: 602 MLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAG 661

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
            LE A++ V  MP + N+ VW ALL + R+H D E+  +AA ++F L   ++ G +V L+
Sbjct: 662 KLEDAMELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEP-EKSGTHVLLA 720

Query: 461 NTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           NT A+AG WD + ++R+ MK   V K+   SWV
Sbjct: 721 NTYASAGMWDEMAKVRKLMKDSNVKKEPAMSWV 753



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/400 (28%), Positives = 191/400 (47%), Gaps = 28/400 (7%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           T  ++ SAL  +  S + F G  +H+H+ K+G+      S  LL L+ +C     A  +F
Sbjct: 3   TPETIGSALARFGTSRSLFAGAHLHSHLLKSGLL--AGFSNHLLTLYSRCRLPSAARAVF 60

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           DE+P     +++ ++  Y  NG   ++L   R +   G   + +   ++LK    C  +V
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLK----CAPDV 116

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML----EKNVIC 219
                 G  VHA  +   +  D  +  ALV  Y   G    AR +FD  +    E+N + 
Sbjct: 117 ----RFGAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVS 172

Query: 220 STSMISGFMSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSIS--IETARKALEVHC 273
             +MIS ++      DA  +FR+ V      +   ++ ++   + S  +E  R   +VH 
Sbjct: 173 WNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGR---QVHG 229

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
            +++  + +DV   +ALVDMY+K G I+ A  VF+ M   +V +W + I G   +G+ ++
Sbjct: 230 AVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHR 289

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC-M 392
           ALEL   M+   + PN  T    L AC  AG  + GR+I   M +  ++    E  A  +
Sbjct: 290 ALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVK--AVADFDEFVAVGL 347

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHD 432
           VD+  + G L+ A K    MP + +  +W AL+S C  HD
Sbjct: 348 VDMYAKHGFLDDARKVFDFMPRR-DLILWNALISGCS-HD 385



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 108/460 (23%), Positives = 206/460 (44%), Gaps = 48/460 (10%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H  + +TG + +   +  L+ ++ K G ++ A  +F+++P   + ++N  I+G + 
Sbjct: 224 GRQVHGAVVRTGYEKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVT 283

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G    +L L+ ++ SSG  P+ +T S +LKA  C  +      NLGR +H  ++K    
Sbjct: 284 HGHDHRALELLLQMKSSGLVPNVFTLSSVLKA--CAGAGA---FNLGRQIHGFMVKAVAD 338

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D+ +   LVD Y K G    AR VFD M  +++I   ++ISG    G   +   +F + 
Sbjct: 339 FDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRM 398

Query: 244 VEK--DIVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
            ++  D+ V     A +   + S E      +VH    K     D  + + L+D Y KCG
Sbjct: 399 RKEGLDLDVNRTTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCG 458

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           ++D A +VF   +  ++ + T+M+    +  +   A++LF  M    ++P+       L+
Sbjct: 459 QLDYAIKVFKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLN 518

Query: 359 ACGHAGLVDKGREI----------------------------FESMERDYSMKPK--MEH 388
           AC      ++G+++                             E  +  +S  P+  +  
Sbjct: 519 ACTSLSAYEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVS 578

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEK---PNSDVWAALLSSCR---LHDDVEMANIAAN 442
           ++ M+  L + G  ++AL     M ++   PN     ++LS+C    L DD +    +  
Sbjct: 579 WSAMIGGLAQHGHGKRALDLFHRMLDEGVAPNHITLTSVLSACNHAGLVDDAKKYFESMK 638

Query: 443 EIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
           E F ++  +    Y  + + L  AGK +   EL   M  +
Sbjct: 639 ETFGIDRTEEH--YACMIDILGRAGKLEDAMELVNNMPFQ 676



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 67/299 (22%), Positives = 139/299 (46%), Gaps = 26/299 (8%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
           T+L S L+   +S+   +  ++HA   K G+  ++++   L+  + KCG L YA ++F E
Sbjct: 410 TTLASVLKSTASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKE 469

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
                + +   M+    +    E+++ L  +++  G  PD +  S +L A T   +    
Sbjct: 470 SRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSA---- 525

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
               G+ VHA ++K    +D     ALV +Y K G    A + F  + E+ ++  ++MI 
Sbjct: 526 -YEQGKQVHAHLIKRQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIG 584

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV--FFED 283
           G    G  + A ++F + +++ +   +       I++ +   A   H  L+ +   +FE 
Sbjct: 585 GLAQHGHGKRALDLFHRMLDEGVAPNH-------ITLTSVLSACN-HAGLVDDAKKYFES 636

Query: 284 VK--LG--------SALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNP 331
           +K   G        + ++D+  + GK++DA  + ++M  Q N   W +++     + +P
Sbjct: 637 MKETFGIDRTEEHYACMIDILGRAGKLEDAMELVNNMPFQANAAVWGALLGASRVHRDP 695


>gi|449508565|ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 138/401 (34%), Positives = 234/401 (58%), Gaps = 19/401 (4%)

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           ++F+ +P++ L ++N +IAG  +NG  EE+L ++R++  +  +PD +T S +L       
Sbjct: 194 KIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIA--- 250

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
            NV + R  G+ +H   ++  + AD  + ++L+D Y K  + + +  VF ++ E++ I  
Sbjct: 251 ENVDISR--GKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISW 308

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS--------IETARKALEVH 272
            S+I+G +  G  ++    FR+ +   I       + YS S        + T     ++H
Sbjct: 309 NSIIAGCVQNGLFDEGLRFFRQMLMAKI-----KPKSYSFSSIMPACAHLTTLHLGKQLH 363

Query: 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPN 332
             + +N F E++ + S+LVDMYAKCG I  A+++FD M+ +++ +WT+MI G   +G   
Sbjct: 364 GYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAP 423

Query: 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACM 392
            A+ELF  M+   ++PN+V F+  L+AC H GLVD+  + F SM RD+ + P +EHYA +
Sbjct: 424 DAIELFEQMETEGIKPNHVAFMAVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAV 483

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR 452
            DLLGRAG LE+A  F+  M   P   +WA LLS+CR+H +++MA   AN I +++ N+ 
Sbjct: 484 SDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHXNIDMAEKVANRILEVDPNN- 542

Query: 453 PGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            GAY+ L+N  +AA +W    + R  M+  G+ K   CSW+
Sbjct: 543 TGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWI 583



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/376 (22%), Positives = 166/376 (44%), Gaps = 48/376 (12%)

Query: 113 AYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRM 172
           A+  +I  Y  +G   +SL     +++SG  PD   F  +LK+       + +  NLG  
Sbjct: 73  AWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCA-----LLMDLNLGES 127

Query: 173 VHAQILKCDVKADDVLYTALVDSYVK------GGKTSYA--------------------- 205
           +H  I++  +  D     AL++ Y K       G+                         
Sbjct: 128 LHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVL 187

Query: 206 -----RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK----TVEKDIVVYNAMIE 256
                R +F+MM EK+++   ++I+G    G  E+   + R+     ++ D    ++++ 
Sbjct: 188 SEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLP 247

Query: 257 GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF 316
             + +++ +R   E+H   I+     D+ + S+L+DMYAKC ++ D+ RVF  + +++  
Sbjct: 248 LIAENVDISRGK-EIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGI 306

Query: 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM 376
           +W S+I G  +NG  ++ L  F  M    ++P   +F   + AC H   +  G+++   +
Sbjct: 307 SWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYI 366

Query: 377 ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH----D 432
            R+      +   + +VD+  + G++  A K + +     +   W A++  C LH    D
Sbjct: 367 TRN-GFDENIFIASSLVDMYAKCGNIRTA-KQIFDRMRLRDMVSWTAMIMGCALHGQAPD 424

Query: 433 DVEMANIAANEIFKLN 448
            +E+      E  K N
Sbjct: 425 AIELFEQMETEGIKPN 440



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 135/302 (44%), Gaps = 45/302 (14%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH    + G+  +  ++  L+ ++ KC  +  + ++F  L +R   ++N +IAG ++
Sbjct: 258 GKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQ 317

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  +E L   R+++ +  +P  Y+FS I+ A   C     L  +LG+ +H  I +    
Sbjct: 318 NGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPA---CAHLTTL--HLGKQLHGYITRNGFD 372

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +  + ++LVD Y K G    A+ +FD M  ++++  T+MI G    G   DA E+F + 
Sbjct: 373 ENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQ- 431

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
           +E + +  N                   H   +            A++   +  G +D+A
Sbjct: 432 METEGIKPN-------------------HVAFM------------AVLTACSHGGLVDEA 460

Query: 304 RRVFDHMQQK-----NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            + F+ M +       V  + ++ D  G+ G   +A +  C M    + P    +   LS
Sbjct: 461 WKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMH---IGPTGSIWATLLS 517

Query: 359 AC 360
           AC
Sbjct: 518 AC 519



 Score = 40.0 bits (92), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 5/104 (4%)

Query: 260 ISIETARKALEVHCQLIKNVFFE--DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT 317
           +SI++  +A ++H Q++K   F+   +   S L+ +Y+    + D+ R+F+ +       
Sbjct: 17  LSIKSRSQAQQLHAQVLK---FQASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPPALA 73

Query: 318 WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           W S+I  Y  +G P+Q+L  F  M    + P++  F   L +C 
Sbjct: 74  WKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCA 117


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  270 bits (689), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 165/490 (33%), Positives = 253/490 (51%), Gaps = 50/490 (10%)

Query: 18  RHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVK 77
           R++ ++P   TFP  L+ +  L N                 + PF   + +AHI K G+ 
Sbjct: 96  RNHGVIPDRHTFPLLLKAFSKLRN-----------------ENPF---QFYAHIVKFGLD 135

Query: 78  PNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL 137
            +  +   L+     CG +  + ++F E  ++ + ++  +I G L+NG+  E+L    ++
Sbjct: 136 FDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEM 195

Query: 138 VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD-VKADDVLYTALVDSY 196
            SSG   D  T   +L A+   R         GR VH   ++   V  D  + +ALVD Y
Sbjct: 196 RSSGVEVDEVTIVSVLCAAAMLRDVW-----FGRWVHGFYVESGRVIWDVYVGSALVDMY 250

Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE 256
            K G    A  VF+ M  +N++   ++I+G++     ++A ++F++ +          IE
Sbjct: 251 SKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMI----------IE 300

Query: 257 GYSISIETARKALEVHCQL-------------IKNVFFEDVKLGSALVDMYAKCGKIDDA 303
           G   +  T   AL    QL              ++    + KLG+ALVDMY+KCG +D+A
Sbjct: 301 GIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEA 360

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
             VF+ +  K+V+ WT+MI+G    G+   +L LF  M    VQPN VTFLG LSAC H 
Sbjct: 361 LLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHG 420

Query: 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA 423
           GLVD+G E+F  M  DY ++P ++HY CMVDLLGRAG LE+A+KF+  MP +P   VW A
Sbjct: 421 GLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGA 480

Query: 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483
           L S C +H   E+     N + KL  +   G Y+ L+N  +   KW++   +R  MK +G
Sbjct: 481 LFSGCMIHKAFELGEHIGNHLIKLQPH-HSGRYILLANLYSRCQKWEAAANVRRLMKGKG 539

Query: 484 VLKDTGCSWV 493
           V K  GCSW+
Sbjct: 540 VDKSPGCSWI 549



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 173/349 (49%), Gaps = 26/349 (7%)

Query: 96  LKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           L Y   +FD L    +  +N +I G+  + Q +  L    +L + G  PD +TF ++LKA
Sbjct: 54  LGYTLLLFDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKA 113

Query: 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
            +  R+  P         +A I+K  +  D  +  +LV ++   G    +R +F    +K
Sbjct: 114 FSKLRNENPF------QFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKK 167

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE----- 270
           +V+  T++I+G +  G   +A E F +     + V    I    +S+  A   L      
Sbjct: 168 DVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTI----VSVLCAAAMLRDVWFG 223

Query: 271 --VHCQLIKN-VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
             VH   +++     DV +GSALVDMY+KCG  DDA +VF+ M  +N+ +W ++I GY +
Sbjct: 224 RWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQ 283

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD-YSMKPKM 386
                +AL++F  M    ++PN  T   AL+AC   G +D+GR + E ++R    +  K+
Sbjct: 284 CNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKL 343

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV--WAALLSSCRLHDD 433
                +VD+  + G +++AL    ++P K   DV  W A+++   +  D
Sbjct: 344 G--TALVDMYSKCGCVDEALLVFEKLPAK---DVYPWTAMINGLAMRGD 387


>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
          Length = 716

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 156/452 (34%), Positives = 243/452 (53%), Gaps = 17/452 (3%)

Query: 56  INSDTPFYGLK----IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL 111
           I + +  +GL     +H  + K G+  N+ IS  LL +++KCG L +A  +FDEL    L
Sbjct: 273 ITACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSYIDL 332

Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR 171
             +  MI GY +NG   ++L L      +   P+  T + +L AS   R       +LG+
Sbjct: 333 VLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLRD-----LSLGK 387

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
            +H   +K  +   +V+  ALVD Y K    S A  +F  +  K+V+   SMISG+    
Sbjct: 388 SIHGLAVKLGLVEYNVVGNALVDMYAKCQAVSEADRIFGRISNKDVVAWNSMISGYAENN 447

Query: 232 FVEDAEEIFRK-----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
             +DA  +F++     +    I V NA+    S+ +        +H   +K+ F  ++ +
Sbjct: 448 MGDDALMLFKQMSLQGSSPDAISVVNAL--SASVCLGDLLIGKSIHGYAVKHAFVSNIYV 505

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
            +AL+++Y KCG +  ARRVFD M  +N  TW +MI GYG  G+   ++ LF  M +  V
Sbjct: 506 DTALLNLYNKCGDLLSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIHLFGEMLKDGV 565

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
            PN + F   LS C H+G+V  G+  F+SM + +++ P M+HYACMVD+L RAG+LE AL
Sbjct: 566 YPNDIAFTSILSTCSHSGMVTAGKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEDAL 625

Query: 407 KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
           +F+  MP + ++ VW A L  C LH  ++ A  A   +  L+  +RP  YV +SN   + 
Sbjct: 626 EFIDNMPMQADTSVWGAFLHGCELHSRLQFAEEAIKRMMVLHP-ERPDLYVLISNLYTSN 684

Query: 467 GKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498
           G WD    +R  M+ +G++K  GCS VG E+G
Sbjct: 685 GMWDKSLAIRRWMQEKGLVKLPGCSSVGHENG 716



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 145/298 (48%), Gaps = 20/298 (6%)

Query: 85  KLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL---VRKLVSSG 141
           KLL  +   G L  A  +FD  P+    +Y  M+   ++  +  ++++L   +R+     
Sbjct: 102 KLLSCYAALGDLASARMVFDGTPRPDAYSYGAMLWCLVQTERHADAVALHHDMRRRRPCP 161

Query: 142 ERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK 201
           E  D +  S+ LKA  C RS      + GR +H   +K    AD  +  +LVD Y K   
Sbjct: 162 EAQDDFVLSLALKA--CIRSA---EYSYGRSLHCDAIKVG-GADGFVMNSLVDMYAKAED 215

Query: 202 TSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS 261
              AR VF+ + ++NV+  TSMISG +  GF  D   +F K  + ++      I     +
Sbjct: 216 LECARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIA----T 271

Query: 262 IETARKAL-------EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKN 314
           + TA  AL        +H  +IK     +  + +AL+DMY KCG++D AR VFD +   +
Sbjct: 272 VITACSALFGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELDHARCVFDELSYID 331

Query: 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           +  WT+MI GY +NGNP  AL LF   +   + PN VT    LSA      +  G+ I
Sbjct: 332 LVLWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSVTTATVLSASAQLRDLSLGKSI 389



 Score = 73.6 bits (179), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 74/275 (26%), Positives = 124/275 (45%), Gaps = 27/275 (9%)

Query: 190 TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEIFRK--- 242
           T L+  Y   G  + AR+VFD     +     +M+   +      DA     ++ R+   
Sbjct: 101 TKLLSCYAALGDLASARMVFDGTPRPDAYSYGAMLWCLVQTERHADAVALHHDMRRRRPC 160

Query: 243 -TVEKDIVVYNAMIEGYSISIETARKAL--EVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
              + D V+  A+       I +A  +    +HC  IK V   D  + ++LVDMYAK   
Sbjct: 161 PEAQDDFVLSLAL----KACIRSAEYSYGRSLHCDAIK-VGGADGFVMNSLVDMYAKAED 215

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ++ AR+VF+ +  +NV +WTSMI G  +NG  +  L LF  M++  V P+  T    ++A
Sbjct: 216 LECARKVFERIPDRNVVSWTSMISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITA 275

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C     + +GR +  S+ +   M       A ++D+  + G L+ A + V +     +  
Sbjct: 276 CSALFGLHQGRWMHGSVIKQGLMSNSFIS-AALLDMYVKCGELDHA-RCVFDELSYIDLV 333

Query: 420 VWAAL----------LSSCRLHDDVEMANIAANEI 444
           +W  +          L + RL  D   ANIA N +
Sbjct: 334 LWTTMIVGYTQNGNPLDALRLFLDKRFANIAPNSV 368



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/119 (31%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           A S+ +AL   +       G  IH +  K     N  +   LL L+ KCG L  A ++FD
Sbjct: 468 AISVVNALSASVCLGDLLIGKSIHGYAVKHAFVSNIYVDTALLNLYNKCGDLLSARRVFD 527

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           E+  R    +  MI GY   G    S+ L  +++  G  P+   F+ IL  STC  S +
Sbjct: 528 EMNDRNSVTWCAMIGGYGMQGDSAGSIHLFGEMLKDGVYPNDIAFTSIL--STCSHSGM 584


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 163/456 (35%), Positives = 254/456 (55%), Gaps = 17/456 (3%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
            SL S L    N      G ++H  + K+G++        L+ +++KCGA++ A  +F  
Sbjct: 552 VSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKCGAIEAARYVFSC 611

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           +P R++ + N +IAGY +N  VE ++ L +++ + G  P   TF+ +L A T      P 
Sbjct: 612 MPSRSVVSMNAIIAGYAQNDLVE-AIDLFQEMQNEGLNPSEITFASLLDACTG-----PY 665

Query: 166 PRNLGRMVHAQILKCDVKAD-DVLYTALVDSYVKGGKTSYARIVF-DMMLEKNVICSTSM 223
             NLGR +H  I K  +  D D L  +L+  Y+   + + A I+F +    K+ I  T++
Sbjct: 666 KLNLGRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQYPKSTILWTAI 725

Query: 224 ISGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
           ISG    G  E+A    +E+ R     D   + +++   SI + +      +H  +    
Sbjct: 726 ISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSI-LASLGDGRMIHSLIFHVG 784

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKN-VFTWTSMIDGYGKNGNPNQALELF 338
              D   GSA+VDMYAKCG +  + +VF+ M  KN V +W SMI G+ KNG    AL++F
Sbjct: 785 LDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMIVGFAKNGYAENALKIF 844

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398
             M+   ++P+ VTFLG L+AC HAG V +GREIF+ M   Y + P+++H ACM+DLLGR
Sbjct: 845 DEMKHTRIRPDDVTFLGVLTACSHAGRVSEGREIFDIMVHSYKIVPRLDHCACMIDLLGR 904

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN-ANDRPGAYV 457
            G L++A +F+ ++  +PN+ +WA LL +CR+H D      AA ++ +L   N  P  YV
Sbjct: 905 WGFLKEAEEFIDKLNFEPNAMIWATLLGACRIHGDDIRGRRAAEKLIELEPENSSP--YV 962

Query: 458 ALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            LSN  AA+G WD V  +R  M+ +G+ K  GCSW+
Sbjct: 963 LLSNIYAASGNWDEVNSVRRAMREKGLRKLPGCSWI 998



 Score =  158 bits (400), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 104/428 (24%), Positives = 202/428 (47%), Gaps = 76/428 (17%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           IHA   K G      +   ++ L+ KCG +++A + F++L +R + A+N +++ Y + G 
Sbjct: 103 IHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGS 162

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
           +E+ +     L + G  P+ +T++++L  S+C R    +  +LG+ VH  ++K   + + 
Sbjct: 163 LEQVIWCFGSLQNCGVSPNQFTYAIVL--SSCAR---LVDIDLGKQVHCGVIKMGFEFNS 217

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGF-------------- 232
               +L+D Y K G    AR +FD +++ + +  T+MI+G++  G               
Sbjct: 218 FCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKL 277

Query: 233 ---------------------VEDAEEIFRKTVEKDIVVYNAMIEGYS------------ 259
                                ++DA ++F +    ++V +N MI G+             
Sbjct: 278 GLVPDQVAFVTVITACVGLGRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFF 337

Query: 260 ----------------------ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
                                  S+E     L VH Q IK     +V +GS+L++MYAKC
Sbjct: 338 KNMWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKC 397

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
            K++ A++VFD + ++N+  W +M+ GY +NG  ++ ++LF  M+ C   P+  T+   L
Sbjct: 398 EKMEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSIL 457

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           SAC     ++ GR++  S    ++ +  +     +VD+  + G+LE+A +   E     +
Sbjct: 458 SACACLECLEMGRQL-HSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQ-QFEFIRNRD 515

Query: 418 SDVWAALL 425
           +  W A++
Sbjct: 516 NVSWNAII 523



 Score =  157 bits (398), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 106/375 (28%), Positives = 187/375 (49%), Gaps = 13/375 (3%)

Query: 1   MPNLSRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDT 60
           MPN + +  +V  S H +    +     F    +N        T ++L S L    + + 
Sbjct: 309 MPNTNVVAWNVMISGHVKRGCDIEAIDFF----KNMWKTGVKSTRSTLGSVLSAIASLEA 364

Query: 61  PFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120
             YGL +HA   K G+  N  +   L+ ++ KC  ++ A ++FD L +R L  +N M+ G
Sbjct: 365 LNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLGG 424

Query: 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
           Y +NG   + + L  ++   G  PD +T++ IL A  C          +GR +H+ I+K 
Sbjct: 425 YAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLEC-----LEMGRQLHSFIIKH 479

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
           + + +  +   LVD Y K G    AR  F+ +  ++ +   ++I G++ +   ++A  +F
Sbjct: 480 NFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMF 539

Query: 241 RKTVEKDIV---VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           R+ +   I    V  A I     +++   +  +VHC L+K+     +  GS+L+DMY KC
Sbjct: 540 RRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMYVKC 599

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G I+ AR VF  M  ++V +  ++I GY +N +  +A++LF  MQ   + P+ +TF   L
Sbjct: 600 GAIEAARYVFSCMPSRSVVSMNAIIAGYAQN-DLVEAIDLFQEMQNEGLNPSEITFASLL 658

Query: 358 SACGHAGLVDKGREI 372
            AC     ++ GR+I
Sbjct: 659 DACTGPYKLNLGRQI 673



 Score =  105 bits (261), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 64/212 (30%), Positives = 115/212 (54%), Gaps = 9/212 (4%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           + +HAQ LK    +   L +A+VD Y K G   +A   F+ + +++++   S++S +  Q
Sbjct: 101 KTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQ 160

Query: 231 GFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL------EVHCQLIKNVFFEDV 284
           G +E     F  +++   V  N     Y+I + +  + +      +VHC +IK  F  + 
Sbjct: 161 GSLEQVIWCF-GSLQNCGVSPNQFT--YAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNS 217

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
               +L+DMY+KCG + DAR++FD +   +  +WT+MI GY + G P +AL++F  MQ+ 
Sbjct: 218 FCEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKL 277

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESM 376
            + P+ V F+  ++AC   G +D   ++F  M
Sbjct: 278 GLVPDQVAFVTVITACVGLGRLDDACDLFVQM 309



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 89/165 (53%), Gaps = 4/165 (2%)

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
           + +R +  +H Q +K  F    +LGSA+VD+YAKCG ++ A + F+ ++++++  W S++
Sbjct: 95  QASRTSKTIHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVL 154

Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF-ESMERDYS 381
             Y + G+  Q +  F  +Q C V PN  T+   LS+C     +D G+++    ++  + 
Sbjct: 155 SMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFE 214

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
                E    ++D+  + GSL  A K + +    P++  W A+++
Sbjct: 215 FNSFCE--GSLIDMYSKCGSLVDARK-IFDAVVDPDTVSWTAMIA 256


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 150/449 (33%), Positives = 251/449 (55%), Gaps = 6/449 (1%)

Query: 55  YINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAY 114
           +  +D    G ++H    K+G+  + +++  L+ ++ K G   +A ++F+++    L ++
Sbjct: 296 WAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISW 355

Query: 115 NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH 174
           N MI+   ++   EES++L   L+  G +PD +T + I  A+        +  + G+ +H
Sbjct: 356 NSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIH 415

Query: 175 AQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVE 234
           A  +K    +D  + + ++D Y+K G    A IVF+ +   + +  TSMISG +  G  +
Sbjct: 416 AHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNED 475

Query: 235 DAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSAL 290
            A  I+ +     V  D   +  +I+  S  +    +  ++H  +IK     D  +G++L
Sbjct: 476 QALRIYHRMRQSRVMPDEYTFATLIKASS-CVTALEQGRQLHANVIKLDCVSDPFVGTSL 534

Query: 291 VDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY 350
           VDMYAKCG I+DA R+F  M  +N+  W +M+ G  ++GN  +A+ LF  M+   ++P+ 
Sbjct: 535 VDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDR 594

Query: 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410
           V+F+G LSAC HAGL  +  E   SM  DY ++P++EHY+C+VD LGRAG +++A K + 
Sbjct: 595 VSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIE 654

Query: 411 EMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
            MP K ++ +  ALL +CR+  DVE     A  +F L   D   AYV LSN  AAA +WD
Sbjct: 655 TMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFD-SAAYVLLSNIYAAANRWD 713

Query: 471 SVTELREKMKLRGVLKDTGCSWVGTESGL 499
            VT+ R+ MK + V KD G SW+  ++ L
Sbjct: 714 DVTDARKMMKRKNVKKDPGFSWIDVKNML 742



 Score =  154 bits (390), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 110/405 (27%), Positives = 201/405 (49%), Gaps = 19/405 (4%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           T  +L   L+  +NS   +    +H +  K G++ +  +S  L+ ++ KCG ++ A  +F
Sbjct: 182 TRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLF 241

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           D + +R +  +N M+ GY++ G  +E+  L  +   SG RPD ++  +IL       ++ 
Sbjct: 242 DWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTD- 300

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
                LG+ VH   +K  + +D  +  +LV+ Y K G   +AR VF+ M   ++I   SM
Sbjct: 301 --DLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSM 358

Query: 224 ISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL----------EVHC 273
           IS        E++  +F   + + +   +  +   SI++ TA KA           ++H 
Sbjct: 359 ISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLA--SITLATAAKACGCLVLLDQGKQIHA 416

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
             IK  F  D+ + S ++DMY KCG + +A  VF+++   +   WTSMI G   NGN +Q
Sbjct: 417 HAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQ 476

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES-MERDYSMKPKMEHYACM 392
           AL ++  M++  V P+  TF   + A      +++GR++  + ++ D    P +     +
Sbjct: 477 ALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSDPFVG--TSL 534

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           VD+  + G++E A +   +M  + N  +W A+L     H + E A
Sbjct: 535 VDMYAKCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAEEA 578



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 185/395 (46%), Gaps = 28/395 (7%)

Query: 52  LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL 111
           L+  I++     G   HA I  +G   +  +S  LL ++ KCG+L  A Q+FD  P+R L
Sbjct: 84  LRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDL 143

Query: 112 SAYNYMIAGYL-----KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
             +N ++  Y       +G  +E L L R L +S       T + +LK   C  S     
Sbjct: 144 VTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLK--LCLNSGCLWA 201

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
                 VH   +K  ++ D  +  ALV+ Y K G+   AR++FD M E++V+    M+ G
Sbjct: 202 ---AEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKG 258

Query: 227 FMSQGFVEDAEEIF----RKTVEKD----IVVYNAMIEGYSISIETARKALEVHCQLIKN 278
           ++  G  ++A ++F    R  +  D     ++ N  +   +  +E  +   +VH   +K+
Sbjct: 259 YVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGCLWAGTDDLELGK---QVHGIAVKS 315

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
               DV + ++LV+MY+K G    AR VF+ M+  ++ +W SMI    ++    +++ LF
Sbjct: 316 GLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLF 375

Query: 339 CMMQECCVQPNY-----VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMV 393
             +    ++P++     +T   A  ACG   L+D+G++I     +       +   + ++
Sbjct: 376 IDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQGKQIHAHAIK-AGFDSDLHVNSGIL 434

Query: 394 DLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
           D+  + G +  A   V      P+   W +++S C
Sbjct: 435 DMYIKCGDMVNA-GIVFNYISAPDDVAWTSMISGC 468



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 141/316 (44%), Gaps = 26/316 (8%)

Query: 169 LGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM 228
           LG+  HA+I+      D  L   L+  Y K G  S AR VFD   E++++   +++  + 
Sbjct: 95  LGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYA 154

Query: 229 S-----QGFVEDAEEIFR---KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVF 280
           +      G  ++   +FR    ++     +  A +    ++      A  VH   IK   
Sbjct: 155 ASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGL 214

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             DV +  ALV++Y+KCG++ DAR +FD M++++V  W  M+ GY + G   +A +LF  
Sbjct: 215 EWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSE 274

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVD-------KGREIFESMERDYSMKPKMEHYACMV 393
                ++P+  +    L+ C  AG  D        G  +   ++ D S+         +V
Sbjct: 275 FHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANS------LV 328

Query: 394 DLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHD-DVEMANIAANEIFKLNANDR 452
           ++  + G    A +   +M +  +   W +++SSC     + E  N+    I  L+   +
Sbjct: 329 NMYSKMGCAYFAREVFNDM-KHLDLISWNSMISSCAQSSLEEESVNLF---IDLLHEGLK 384

Query: 453 PGAYVALSNTLAAAGK 468
           P  +   S TLA A K
Sbjct: 385 PDHFTLASITLATAAK 400


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 155/465 (33%), Positives = 251/465 (53%), Gaps = 42/465 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +I+  I K G   +  +   L+ ++ K G +  A + FDE+P+R +   N MI G ++
Sbjct: 157 GRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMR 216

Query: 124 NGQVEES-------------------------------LSLVRKLVSSGERPDGYTFSMI 152
            G +EES                               L + R++  +G   D +TF  +
Sbjct: 217 CGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSV 276

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L   T C S + L    G+ +HA +++ D K +  + +ALVD Y K      A  VF  M
Sbjct: 277 L---TACGSLLALGE--GKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRM 331

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKA 268
            +KNVI  T+M+ G+   GF E+A +IF    R  VE D     ++I   + ++ +  + 
Sbjct: 332 PQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCA-NLASLEEG 390

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
            + HC+ + +     + + +AL+ +Y KCG  +++ R+F  M  ++  +WT+++ GY + 
Sbjct: 391 AQFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQF 450

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G  N+ + LF  M    ++P+ VTF+G LSAC  AGLV+KG + FESM +++ + P ++H
Sbjct: 451 GKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDH 510

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
             C++DLLGRAG LE+A  F+  MP  P+   WA LLSSCR+H D+E+   AA+ +  L 
Sbjct: 511 CTCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALE 570

Query: 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             + P +YV LS+  A+ GKWD V +LR  M+ + V K+ G SW+
Sbjct: 571 PQN-PASYVLLSSLYASKGKWDKVAQLRRGMRDKRVRKEPGYSWI 614



 Score =  159 bits (401), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 121/422 (28%), Positives = 202/422 (47%), Gaps = 63/422 (14%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           K+H  I KT  +P T +S  L+  + K G L YA  +FD +PQ  L ++N +++ Y K G
Sbjct: 26  KLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPNLFSWNTILSVYSKLG 85

Query: 126 ---QVEESLSLV--RKLVSSGERPDGY-----------TFSMILKASTCCRSNVPLPR-- 167
              Q+++  +L+  R  VS      GY            + ++LK +    + +      
Sbjct: 86  LLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKDAAMNLNRITFSTML 145

Query: 168 ---------NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI 218
                    +LGR ++ QILK    +D  + + LVD Y K G    A+  FD M E+NV+
Sbjct: 146 ILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYDAKRYFDEMPERNVV 205

Query: 219 CSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMI---------------------EG 257
              +MI+G M  G +E+++ +F    E+D + +  MI                      G
Sbjct: 206 MCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREALDMFREMRLAG 265

Query: 258 YSI------SIETARKAL-------EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDAR 304
           +++      S+ TA  +L       ++H  +I+    ++V +GSALVDMY+KC  I  A 
Sbjct: 266 FAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAE 325

Query: 305 RVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG 364
            VF  M QKNV +WT+M+ GYG+NG   +A+++F  MQ   V+P+  T    +S+C +  
Sbjct: 326 TVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLA 385

Query: 365 LVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAAL 424
            +++G + F        +   +     ++ L G+ GS E + +   EM  +     W AL
Sbjct: 386 SLEEGAQ-FHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVS-WTAL 443

Query: 425 LS 426
           L+
Sbjct: 444 LA 445



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 140/334 (41%), Gaps = 71/334 (21%)

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
           CC S     +   + +H  ILK   + +  L   L+ +Y K G  +YA  VFD + + N+
Sbjct: 15  CCESQ---NQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAHHVFDHIPQPNL 71

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS-------------ISIET 264
               +++S +   G +   ++IF     +D V +N  I GY+             + ++ 
Sbjct: 72  FSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYKLMLKD 131

Query: 265 ARKAL----------------------EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
           A   L                      +++ Q++K  F  DV +GS LVDMY K G I D
Sbjct: 132 AAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKLGLIYD 191

Query: 303 ARRVFDHMQQKNV-------------------------------FTWTSMIDGYGKNGNP 331
           A+R FD M ++NV                                +WT MI G  +NG  
Sbjct: 192 AKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLE 251

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC 391
            +AL++F  M+      +  TF   L+ACG    + +G++I   + R    K  +   + 
Sbjct: 252 REALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRT-DHKDNVFVGSA 310

Query: 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
           +VD+  +  S++ A      MP+K N   W A+L
Sbjct: 311 LVDMYSKCRSIKSAETVFKRMPQK-NVISWTAML 343


>gi|449523774|ref|XP_004168898.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 154/443 (34%), Positives = 246/443 (55%), Gaps = 20/443 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA   K G+  +  +   +  ++ K G L  A ++FDE+P R L  +N  I+  + 
Sbjct: 127 GKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISNSVL 186

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G+ E+S+    +L+  G +PD  TF   L A   C   + L    G  +H  I++    
Sbjct: 187 HGRPEDSVIAFIELLRVGGKPDSITFCXFLNA---CSDKLGL--GPGCQLHGFIIRSGYG 241

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +  +   L+D Y K G+   + +VFD M E+N +  +S+I+ ++     E A  +F + 
Sbjct: 242 QNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRA 301

Query: 244 VEKDIVVYNAMIEGYSIS------IETAR--KALEVHCQLIKNVFFEDVKLGSALVDMYA 295
            ++DI   + M+     +      IE  R  +AL V   + +N+F     + SALVDMY 
Sbjct: 302 RKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIF-----VASALVDMYG 356

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNYVTFL 354
           KCG ID+A + F+ M ++N+ +W +++ GY   G+ N+A+ L   M     + P+YV+ +
Sbjct: 357 KCGSIDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLI 416

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
            ALSAC  AG +  G +IFESM+  Y ++P  EHYAC+VDLLGRAG +E A  F+  MP 
Sbjct: 417 CALSACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPF 476

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
            P   +W ALL +CR+H   E+  +AA ++F+L+  D  G +V LSN  AA G+W+ VT 
Sbjct: 477 PPTISIWGALLGACRMHGKPELGKLAAEKLFELDPKDS-GNHVVLSNMFAATGRWEEVTV 535

Query: 475 LREKMKLRGVLKDTGCSWVGTES 497
           +R +MK  G+ K  G SW+  +S
Sbjct: 536 VRNEMKEVGIKKGAGFSWITVDS 558



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 116/448 (25%), Positives = 209/448 (46%), Gaps = 18/448 (4%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLI-LHLKCGALKYAGQ 101
           L+  SL S ++  ++  +   G   HA I KT   P        L+ ++ K   L  A  
Sbjct: 4   LSQNSLASVVELAVSVRSSLLGRAAHAQILKTLKTPFPAFLYNHLVNMYAKLDHLNSAKL 63

Query: 102 MFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161
           + +  P R++  +  +IAG ++NG    +L     ++S   RP+ +TF  +LKAST  R 
Sbjct: 64  ILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRM 123

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
           +       G+ +HA  +K  +  D  +  ++ D Y K G  + A  VFD M  +N+    
Sbjct: 124 DTT-----GKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWN 178

Query: 222 SMISGFMSQGFVEDAE----EIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIK 277
           + IS  +  G  ED+     E+ R   + D + +   +   S  +       ++H  +I+
Sbjct: 179 AYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCXFLNACSDKLGLG-PGCQLHGFIIR 237

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
           + + ++V + + L+D Y KCG+++ +  VFD M ++N  +W+S+I  Y +N    +A  L
Sbjct: 238 SGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCL 297

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
           F   ++  ++P        L AC     ++ GR + +++     ++  +   + +VD+ G
Sbjct: 298 FLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSV-QALAVKACVEQNIFVASALVDMYG 356

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457
           + GS++ A +    MPE+ N   W ALL     H       +A  E     A   P +YV
Sbjct: 357 KCGSIDNAEQAFNAMPER-NLVSWNALLGG-YAHQGHANKAVALLEEMTSAAGIVP-SYV 413

Query: 458 ALSNTLAA---AGKWDSVTELREKMKLR 482
           +L   L+A   AG   +  ++ E MK R
Sbjct: 414 SLICALSACSRAGDLKTGMKIFESMKER 441


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 155/461 (33%), Positives = 247/461 (53%), Gaps = 42/461 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +I  H+ + G   +  +   ++ + + CG L  A ++FDE   R L ++N +I GY++ G
Sbjct: 176 EILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCG 235

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             +E+  L  K+      PD  T   ++ AS    +       LGR +H  I +  +   
Sbjct: 236 LADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLEN-----LALGRKLHQSIEEMGLNLT 290

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             L  AL+D Y+K      A+I+F+ M +K V+  T+M+ G+   G +E A  +F +  E
Sbjct: 291 VPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPE 350

Query: 246 KDIVVYNAMIEGYSISIETARKALEV---------------------------------- 271
           KD+V++NA+I G+ +  + +++AL +                                  
Sbjct: 351 KDVVLWNALIGGF-VQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIW 409

Query: 272 -HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
            H  + K+    +V LG+ALVDMYAKCG I  A +VF+ M  +N  TWT++I G   +G 
Sbjct: 410 MHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQ 469

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
           P+ A+  F  M    + P+ +TF+G LSAC H GLVD+GR+ F  M   Y + PK++HY+
Sbjct: 470 PHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYS 529

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
           C+VDLLGRAG LE+A + +  MP +P++ VW AL    R+H +V M   AA+++ +L+ +
Sbjct: 530 CLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPH 589

Query: 451 DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
           D  G YV L+N    A  W+   ++R+ M+ RGV K  GCS
Sbjct: 590 D-GGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCS 629



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 77/333 (23%), Positives = 146/333 (43%), Gaps = 47/333 (14%)

Query: 135 RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRM--VHAQILKCDVKADDVLYTAL 192
           R L    ++P  +  S +L  S    S +    ++ +M  +HAQ++   + +D    + L
Sbjct: 33  RSLPHHKDKPTNWNASHVLIQSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRL 92

Query: 193 VD--SYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK---- 246
           V   +  +     Y   + +     NV      I G++      +A  ++R  + K    
Sbjct: 93  VAFCAISEWRNLDYCDKILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAI 152

Query: 247 -DIVVYNAMIE---GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
            D   Y  + +   G+S+S      A E+   +I+  F  D+ + +A++ +   CG++  
Sbjct: 153 PDNYTYPLLFKVCAGFSLS----WTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLA 208

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           AR++FD    +++ +W S+I+GY + G  ++A +L+  M E  V P+ VT +G +SA   
Sbjct: 209 ARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQ 268

Query: 363 AGLVDKGREIFESMER--------------DYSMKPK----------------MEHYACM 392
              +  GR++ +S+E               D  +K K                +  +  M
Sbjct: 269 LENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTM 328

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
           V    + G LE A++   EMPEK +  +W AL+
Sbjct: 329 VIGYAKFGLLESAVRLFNEMPEK-DVVLWNALI 360



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 108/255 (42%), Gaps = 42/255 (16%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+ +H ++ K  +  N  +   L+ ++ KCG +K A Q+F+E+P R    +  +I G   
Sbjct: 407 GIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLAL 466

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +GQ   ++S   +++S G  PD  TF  +L  S CC                        
Sbjct: 467 HGQPHAAISYFSEMISIGLVPDEITFIGVL--SACC------------------------ 500

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
                +  LVD     G+  + ++     +   +   + ++      GF+E+AEE+ R  
Sbjct: 501 -----HGGLVDQ----GRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSM 551

Query: 244 -VEKDIVVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
             E D VV+ A+  G  I  ++    +A     +L  +    D  +   L +MY      
Sbjct: 552 PFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPH----DGGIYVLLANMYGDANMW 607

Query: 301 DDARRVFDHMQQKNV 315
           + AR+V   M+++ V
Sbjct: 608 EQARKVRKMMEERGV 622



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/311 (21%), Positives = 128/311 (41%), Gaps = 57/311 (18%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G K+H  I + G+     ++  L+ +++KC  ++ A  +F+ + ++T+ ++  M+ GY K
Sbjct: 275 GRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAK 334

Query: 124 NGQVE-------------------------------ESLSLVRKLVSSGERPDGYTFSMI 152
            G +E                               E+L+L  ++ +S   PD  T   +
Sbjct: 335 FGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKIT---V 391

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           +   + C     L  ++G  +H  + K ++  +  L TALVD Y K G    A  VF+ M
Sbjct: 392 VNCLSACSQLGAL--DVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEM 449

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVH 272
             +N +  T++I G    G    A   F + +   +V       G   +          H
Sbjct: 450 PGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSAC--------CH 501

Query: 273 CQLI---KNVFFE---------DVKLGSALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWT 319
             L+   ++ F++          +K  S LVD+  + G +++A  +   M  + +   W 
Sbjct: 502 GGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWG 561

Query: 320 SMIDGYGKNGN 330
           ++  G   +GN
Sbjct: 562 ALFFGSRIHGN 572


>gi|449435364|ref|XP_004135465.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Cucumis sativus]
          Length = 614

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 153/432 (35%), Positives = 232/432 (53%), Gaps = 43/432 (9%)

Query: 96  LKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE--RPDGYTFSMIL 153
           L Y+ Q+ D+  + TL A N MI  Y K+    +S     K++ S +   PD YTF+ ++
Sbjct: 59  LLYSNQILDQCAKPTLFALNSMIRAYSKSLTPHKSFQFYNKILQSNDVMSPDNYTFNFLV 118

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
           +  TC +S        G  VH  ++K   + D  + + L+  Y +    S    VF+ + 
Sbjct: 119 R--TCAQSAC----EAGPAVHGALIKHGFEYDPHVESGLIFMYAEMSCLSSCHRVFESVQ 172

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS-------------- 259
           + +++C T+M+S     G +  A  +F    ++D V +NAMI GY+              
Sbjct: 173 KPDLVCQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKL 232

Query: 260 -------------ISIETARKALEV-------HCQLIKNVFFEDVKLGSALVDMYAKCGK 299
                        IS+ TA   L         H  + KN     V LG+ALVDMY KCG 
Sbjct: 233 MQMDGVKVNEVSMISVVTACTHLGALDQGKWAHAYIEKNKIQMTVNLGTALVDMYFKCGN 292

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +D A +VF  M +KNV+TW++ I G   NG   + LELF  M+   + PN +TF+  L  
Sbjct: 293 VDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFISVLKG 352

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C   G VD+GR  F+SM+RD+ ++P++EHY CMVDL GRAG LE+AL F+  MP KP++ 
Sbjct: 353 CSVVGFVDEGRSHFDSMKRDHGIEPRLEHYGCMVDLYGRAGRLEEALNFINTMPLKPHAG 412

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
            W ALL++CR++ ++E+   A+ ++ ++   +  GAYV+LSN  A  G WD V+ +R+ M
Sbjct: 413 AWGALLNACRMYKNMELGEFASRKLIEVEGKNH-GAYVSLSNIYADTGNWDRVSNVRQSM 471

Query: 480 KLRGVLKDTGCS 491
           K  G+ K  GCS
Sbjct: 472 KAEGISKLPGCS 483



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/289 (26%), Positives = 121/289 (41%), Gaps = 45/289 (15%)

Query: 77  KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRK 136
           KP+      ++    KCG + +A  +FD +PQR   ++N MIAGY + GQ  E+L+L + 
Sbjct: 173 KPDLVCQTTMVSACAKCGDIGFARNLFDSMPQRDFVSWNAMIAGYAQRGQSREALNLFKL 232

Query: 137 LVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196
           +   G + +    SMI   + C         + G+  HA I K  ++    L TALVD Y
Sbjct: 233 MQMDGVKVN--EVSMISVVTACTHLGA---LDQGKWAHAYIEKNKIQMTVNLGTALVDMY 287

Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE 256
            K G    A  VF  M EKNV   ++ I G    G+ +   E+F     + I        
Sbjct: 288 FKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAP------ 341

Query: 257 GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF 316
                                 + F  V  G ++V      G +D+ R  FD M++ +  
Sbjct: 342 --------------------NEITFISVLKGCSVV------GFVDEGRSHFDSMKRDHGI 375

Query: 317 T-----WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
                 +  M+D YG+ G   +AL     M    ++P+   +   L+AC
Sbjct: 376 EPRLEHYGCMVDLYGRAGRLEEALNFINTMP---LKPHAGAWGALLNAC 421



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 60/127 (47%), Gaps = 4/127 (3%)

Query: 32  KLQNYDSLS-NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILH 90
           KL   D +  N ++  S+ +A  H    D    G   HA+I K  ++   N+   L+ ++
Sbjct: 231 KLMQMDGVKVNEVSMISVVTACTHLGALDQ---GKWAHAYIEKNKIQMTVNLGTALVDMY 287

Query: 91  LKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFS 150
            KCG +  A ++F E+ ++ +  ++  I G   NG  ++ L L   +   G  P+  TF 
Sbjct: 288 FKCGNVDRALKVFWEMNEKNVYTWSTAIGGLAMNGYGQKCLELFSFMKHEGIAPNEITFI 347

Query: 151 MILKAST 157
            +LK  +
Sbjct: 348 SVLKGCS 354


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 155/461 (33%), Positives = 247/461 (53%), Gaps = 42/461 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +I  H+ + G   +  +   ++ + + CG L  A ++FDE   R L ++N +I GY++ G
Sbjct: 176 EILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCG 235

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             +E+  L  K+      PD  T   ++ AS    +       LGR +H  I +  +   
Sbjct: 236 LADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLEN-----LALGRKLHQSIEEMGLNLT 290

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             L  AL+D Y+K      A+I+F+ M +K V+  T+M+ G+   G +E A  +F +  E
Sbjct: 291 VPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPE 350

Query: 246 KDIVVYNAMIEGYSISIETARKALEV---------------------------------- 271
           KD+V++NA+I G+ +  + +++AL +                                  
Sbjct: 351 KDVVLWNALIGGF-VQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIW 409

Query: 272 -HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
            H  + K+    +V LG+ALVDMYAKCG I  A +VF+ M  +N  TWT++I G   +G 
Sbjct: 410 MHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQ 469

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
           P+ A+  F  M    + P+ +TF+G LSAC H GLVD+GR+ F  M   Y + PK++HY+
Sbjct: 470 PHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYS 529

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
           C+VDLLGRAG LE+A + +  MP +P++ VW AL    R+H +V M   AA+++ +L+ +
Sbjct: 530 CLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPH 589

Query: 451 DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
           D  G YV L+N    A  W+   ++R+ M+ RGV K  GCS
Sbjct: 590 D-GGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCS 629



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 76/333 (22%), Positives = 145/333 (43%), Gaps = 47/333 (14%)

Query: 135 RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRM--VHAQILKCDVKADDVLYTAL 192
           R L    ++P  +  S +L  S    S +    ++ +M  +HAQ++   + +D    + L
Sbjct: 33  RSLPHHKDKPTNWNASHVLIQSNPLLSLLEACTSMAKMKEIHAQMISTGLISDGFALSRL 92

Query: 193 VD--SYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK---- 246
           V   +  +     Y   + +     N       I G++      +A  ++R  + K    
Sbjct: 93  VAFCAISEWRNLDYCDKILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAI 152

Query: 247 -DIVVYNAMIE---GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
            D   Y  + +   G+S+S      A E+   +I+  F  D+ + +A++ +   CG++  
Sbjct: 153 PDNYTYPLLFKVCAGFSLS----WTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLA 208

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           AR++FD    +++ +W S+I+GY + G  ++A +L+  M E  V P+ VT +G +SA   
Sbjct: 209 ARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQ 268

Query: 363 AGLVDKGREIFESMER--------------DYSMKPK----------------MEHYACM 392
              +  GR++ +S+E               D  +K K                +  +  M
Sbjct: 269 LENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTM 328

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
           V    + G LE A++   EMPEK +  +W AL+
Sbjct: 329 VIGYAKFGLLESAVRLFNEMPEK-DVVLWNALI 360



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/255 (23%), Positives = 108/255 (42%), Gaps = 42/255 (16%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+ +H ++ K  +  N  +   L+ ++ KCG +K A Q+F+E+P R    +  +I G   
Sbjct: 407 GIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLAL 466

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +GQ   ++S   +++S G  PD  TF  +L  S CC                        
Sbjct: 467 HGQPHAAISYFSEMISIGLVPDEITFIGVL--SACC------------------------ 500

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
                +  LVD     G+  + ++     +   +   + ++      GF+E+AEE+ R  
Sbjct: 501 -----HGGLVDQ----GRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSM 551

Query: 244 -VEKDIVVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
             E D VV+ A+  G  I  ++    +A     +L  +    D  +   L +MY      
Sbjct: 552 PFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPH----DGGIYVLLANMYGDANMW 607

Query: 301 DDARRVFDHMQQKNV 315
           + AR+V   M+++ V
Sbjct: 608 EQARKVRKMMEERGV 622



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/311 (21%), Positives = 128/311 (41%), Gaps = 57/311 (18%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G K+H  I + G+     ++  L+ +++KC  ++ A  +F+ + ++T+ ++  M+ GY K
Sbjct: 275 GRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAK 334

Query: 124 NGQVE-------------------------------ESLSLVRKLVSSGERPDGYTFSMI 152
            G +E                               E+L+L  ++ +S   PD  T   +
Sbjct: 335 FGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKIT---V 391

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           +   + C     L  ++G  +H  + K ++  +  L TALVD Y K G    A  VF+ M
Sbjct: 392 VNCLSACSQLGAL--DVGIWMHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEM 449

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVH 272
             +N +  T++I G    G    A   F + +   +V       G   +          H
Sbjct: 450 PGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSAC--------CH 501

Query: 273 CQLI---KNVFFE---------DVKLGSALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWT 319
             L+   ++ F++          +K  S LVD+  + G +++A  +   M  + +   W 
Sbjct: 502 GGLVDQGRDYFYQMTSKYGISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWG 561

Query: 320 SMIDGYGKNGN 330
           ++  G   +GN
Sbjct: 562 ALFFGSRIHGN 572


>gi|357124213|ref|XP_003563798.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 637

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 156/459 (33%), Positives = 252/459 (54%), Gaps = 12/459 (2%)

Query: 40  SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYA 99
           S+P +     S LQ  + S +   G ++H  +  +G+ P+T ++ KL+ L+  CG + +A
Sbjct: 57  SSPNSYHHYTSVLQSCVASRSLGTGRQLHGRLLVSGLGPDTVLATKLVDLYAACGLVGHA 116

Query: 100 GQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCC 159
            ++FD +P+R +  +N +I  Y ++G  E ++ L R +V  G  PD +T+ + LKA    
Sbjct: 117 RRLFDGMPKRNVFLWNVLIRAYARDGPHEVAIQLYRGMVDYGVEPDNFTYPLALKACAAL 176

Query: 160 RSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVIC 219
                     GR VH ++L      D  +   LVD Y K G    AR VFD +  ++ + 
Sbjct: 177 LDL-----ETGREVHERVLGTHWGEDMFVCAGLVDMYAKCGCVDDARAVFDRIRVRDSVV 231

Query: 220 STSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL----EVHCQL 275
             SMI+ +   G   +A  + R      +    A +   +IS      AL    E+H   
Sbjct: 232 WNSMIAAYGQNGRPMEALSLCRDMAANGVGPTIATLVS-TISAAADAAALPRGRELHGFG 290

Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
            +  F    KL ++LVDMYAK G +  AR +F+ + ++ + +W +MI GYG +G+ ++AL
Sbjct: 291 WRRGFDRQDKLKTSLVDMYAKSGWVQVARVLFEQLMKRELVSWNAMICGYGMHGHFDEAL 350

Query: 336 ELFCMMQ-ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394
           +LF  M+ E  V P+ +TF+G LSAC H G+V + +E F  M   YS+KP ++H+ C+VD
Sbjct: 351 KLFNKMRVEAQVTPDNITFVGVLSACNHGGMVKEAKEFFGLMVDVYSIKPTVQHFTCLVD 410

Query: 395 LLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG 454
           +LG AG  E+A   +  MP +P+S +W ALL+ C++H +VE+  +A  ++ +L   D  G
Sbjct: 411 VLGHAGRFEEAYDLIKGMPMQPDSGIWGALLNGCKIHKNVELGELALQKLIELEPED-AG 469

Query: 455 AYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            YV LSN  A +GKW+    +R+ M  RG+ K  GCSW+
Sbjct: 470 NYVLLSNIYAQSGKWEKAARVRKLMTNRGLKKIIGCSWI 508


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 162/436 (37%), Positives = 239/436 (54%), Gaps = 18/436 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH+  TKTG   +  +    + L+ KCG +K A  +F E  +  + AYN MI GY  
Sbjct: 240 GMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTS 299

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRM--VHAQILKCD 181
           NG+ E SLSL ++L+ SG +         LK+ST   S VP+  +L  +  +H   LK +
Sbjct: 300 NGETELSLSLFKELMLSGAK---------LKSSTLV-SLVPVSGHLMLIYAIHGYSLKSN 349

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
             +   + TAL   Y K  +   AR +FD   EK++    +MISG+   G  EDA  +FR
Sbjct: 350 FLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFR 409

Query: 242 KTVEKDIV---VYNAMIEGYSISIETARKALEVHCQLIKNVFFED-VKLGSALVDMYAKC 297
           +    +     V    I      +        VH  L+++  FE  + + +AL+ MYAKC
Sbjct: 410 EMQNSEFSPNPVTITCILSACAQLGALSLGKWVH-DLVRSTDFESSIYVSTALIGMYAKC 468

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G I +ARR+FD M +KN  TW +MI GYG +G+  +AL +F  M    + P  VTFL  L
Sbjct: 469 GSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVL 528

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            AC HAGLV +G EIF SM   Y  +P ++HYAC+VD+LGRAG L++AL+F+  MP +P 
Sbjct: 529 YACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPG 588

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
             VW  LL +CR+H D  +A   + ++F+L+  D  G +V LSN  +A   +     +R+
Sbjct: 589 PSVWETLLGACRIHKDTNLARTVSEKLFELDP-DNVGYHVLLSNIHSADRNYPQAATVRQ 647

Query: 478 KMKLRGVLKDTGCSWV 493
             K R + K  G + +
Sbjct: 648 TAKKRKLAKAPGYTLI 663



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 183/411 (44%), Gaps = 20/411 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH      G      +   ++ ++ K   ++ A ++FD +P++    +N MI+GY K
Sbjct: 138 GCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRK 197

Query: 124 NGQVEESLSLVRKLVS-SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           N    ES+ + R L++ S  R D  T   IL A    +        LG  +H+   K   
Sbjct: 198 NEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQE-----LRLGMQIHSLATKTGC 252

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            + D + T  +  Y K GK   A  +F      +++   +MI G+ S G  E +  +F++
Sbjct: 253 YSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKE 312

Query: 243 ------TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
                  ++   +V    + G+ + I        +H   +K+ F     + +AL  +Y+K
Sbjct: 313 LMLSGAKLKSSTLVSLVPVSGHLMLI------YAIHGYSLKSNFLSHTSVSTALTTVYSK 366

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
             +I+ AR++FD   +K++ +W +MI GY +NG    A+ LF  MQ     PN VT    
Sbjct: 367 LNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCI 426

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           LSAC   G +  G+ + + + R    +  +     ++ +  + GS+ +A +    MP+K 
Sbjct: 427 LSACAQLGALSLGKWVHD-LVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKK- 484

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG 467
           N   W  ++S   LH   + A    +E+        P  ++ +    + AG
Sbjct: 485 NEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAG 535



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 161/370 (43%), Gaps = 23/370 (6%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           + HA I   G + + ++  KL       GA+ YA  +F  + +  +  +N ++ G+  N 
Sbjct: 38  QTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNE 97

Query: 126 QVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
               SL++   L  S + +P+  T++  + A++  R +       G ++H Q +     +
Sbjct: 98  SPHSSLAVFAHLRKSTDLKPNSSTYAFAISAASGFRDD-----RAGCVIHGQAIVDGCDS 152

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
           + +L + +V  Y K  +   AR VFD M EK+ I   +MISG+       ++ ++FR  +
Sbjct: 153 ELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLI 212

Query: 245 EKDIVVYNAM----IEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
            +     +      I      ++  R  +++H    K   +    + +  + +Y+KCGKI
Sbjct: 213 NESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKI 272

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
             A  +F   ++ ++  + +MI GY  NG    +L LF  +     +    T +  +   
Sbjct: 273 KMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVS 332

Query: 361 GHAGLVDKGREIFESMERDYSMKPK-MEHYA---CMVDLLGRAGSLEQALKFVLEMPEKP 416
           GH  L+             YS+K   + H +    +  +  +   +E A K   E PEK 
Sbjct: 333 GHLMLI--------YAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEK- 383

Query: 417 NSDVWAALLS 426
           +   W A++S
Sbjct: 384 SLPSWNAMIS 393


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 147/454 (32%), Positives = 253/454 (55%), Gaps = 10/454 (2%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           T  +  + L   I  D   +G ++H  + K     N  ++  LL  + K   +  A ++F
Sbjct: 298 TEFTFAAILTAGIQLDDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLF 357

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
            E+P+    +YN ++  Y  NG+V+ESL L ++L  +G     + F+ +L  +      +
Sbjct: 358 YEMPEVDGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAA-----I 412

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
            L  ++GR +H+Q +  D  ++ ++  +LVD Y K G+   A  +F  +  ++ +  T+M
Sbjct: 413 SLNLDIGRQIHSQTIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAM 472

Query: 224 ISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
           IS ++ +G  ED  ++F    R  +  D   Y +++   + S+ +     ++H  +I + 
Sbjct: 473 ISSYVQKGLHEDGLKLFVEMQRAKIGADAATYASIVRACA-SLASLTLGKQLHSHIIGSG 531

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
           +  +V  GSALVDMYAKCG I DA ++F  M  +N  +W ++I  Y +NG+ +  L LF 
Sbjct: 532 YISNVFSGSALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFE 591

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
            M    +QP+ V+ L  L AC H GLV++G + F+SM R Y + PK EHYA  +D+L R 
Sbjct: 592 EMVRSGLQPDSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRG 651

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVAL 459
           G  ++A K + +MP +P+  +W+++L+SC +H + E+A  AAN++F +        YV +
Sbjct: 652 GRFDEAEKLMAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTM 711

Query: 460 SNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           SN  AAAG+WD+V ++++ M+ RGV K    SWV
Sbjct: 712 SNIYAAAGEWDNVGKVKKAMRERGVKKVPAYSWV 745



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 192/389 (49%), Gaps = 18/389 (4%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
            SL + L  +   D+     ++H+H+ K G      +S  LL  + K  +L  A Q+F++
Sbjct: 199 VSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFND 258

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           +P+R    +N ++ GY K G   E+++L  K+   G RP  +TF+ IL A       + L
Sbjct: 259 IPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAG------IQL 312

Query: 166 PR-NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
                G+ VH  ++KC+   +  +  AL+D Y K  +   A  +F  M E + I    ++
Sbjct: 313 DDIEFGQQVHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLV 372

Query: 225 SGFMSQGFVEDAEEIFRKT----VEKDIVVYNAM--IEGYSISIETARKALEVHCQLIKN 278
           + +   G V+++ E+F++      ++    +  +  I   S++++  R   ++H Q I  
Sbjct: 373 TCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGR---QIHSQTIVT 429

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
               ++ +G++LVDMYAKCG+  +A R+F  +  ++   WT+MI  Y + G     L+LF
Sbjct: 430 DAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLHEDGLKLF 489

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398
             MQ   +  +  T+   + AC     +  G+++   +     +       A +VD+  +
Sbjct: 490 VEMQRAKIGADAATYASIVRACASLASLTLGKQLHSHIIGSGYISNVFSGSA-LVDMYAK 548

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALLSS 427
            GS++ AL+   EMP + NS  W AL+S+
Sbjct: 549 CGSIKDALQMFQEMPVR-NSVSWNALISA 576



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 99/406 (24%), Positives = 181/406 (44%), Gaps = 44/406 (10%)

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           L + A I KTG  PNT  S  L+   L+ G L  A ++FDE+P + + + N MI GY+K+
Sbjct: 86  LHVDASIIKTGFNPNTYRSNFLVKSFLQRGDLNGARKLFDEMPHKNIFSTNTMIMGYIKS 145

Query: 125 G-------------------------------QVEESLSLVRKLVSSGERPDGYTFSMIL 153
           G                               Q  E+  L  ++   G  PD  + + +L
Sbjct: 146 GNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFIEMGRHGIDPDHVSLATLL 205

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
              T   S      N  R VH+ ++K    +  V+  +L+DSY K      A  +F+ + 
Sbjct: 206 SGFTEFDS-----VNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTRSLGLAFQLFNDIP 260

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVE---KDIVVYNAMIEGYSISIETARKALE 270
           E++ +   ++++G+  +GF  +A  +F K  E   +      A I    I ++      +
Sbjct: 261 ERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAILTAGIQLDDIEFGQQ 320

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           VH  ++K  F  +V + +AL+D Y+K  ++ +A ++F  M + +  ++  ++  Y  NG 
Sbjct: 321 VHGFVVKCNFVWNVFVANALLDFYSKHDRVVEASKLFYEMPEVDGISYNVLVTCYAWNGR 380

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
             ++LELF  +Q          F   LS    +  +D GR+I        ++   +   +
Sbjct: 381 VKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIHSQTIVTDAISEILVGNS 440

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC---RLHDD 433
            +VD+  + G   +A +   ++  + +S  W A++SS     LH+D
Sbjct: 441 -LVDMYAKCGEFGEANRIFSDLAIQ-SSVPWTAMISSYVQKGLHED 484


>gi|297596302|ref|NP_001042337.2| Os01g0205200 [Oryza sativa Japonica Group]
 gi|56201494|dbj|BAD72991.1| pentatricopeptide repeat protein -like [Oryza sativa Japonica
           Group]
 gi|255672984|dbj|BAF04251.2| Os01g0205200 [Oryza sativa Japonica Group]
          Length = 658

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 145/453 (32%), Positives = 250/453 (55%), Gaps = 8/453 (1%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L +T+L S +   + S   F G  +H +  +TG+   T++   LL ++  C   +   ++
Sbjct: 83  LDSTTLLSVMPACVQSHYSFIGGVVHGYSVRTGLISETSLGNALLDMYSNCSDWRSTNKI 142

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           F  + Q+ + ++  MI  Y + G  ++   L +++   G RPD +  +  L A      N
Sbjct: 143 FRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEMGLEGIRPDVFAITSALDAFA---GN 199

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
             L    G+ VH   ++  ++    +  AL++ YVK G    AR +FD + +K+ I   +
Sbjct: 200 ESLKH--GKSVHGYAIRNGIEEVLPVANALMEMYVKCGYMEEARFIFDHVTKKDTISWNT 257

Query: 223 MISGFMSQGFVEDAEEIFRKTVE--KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVF 280
           +I G+       +A  +F + +   +   V  A I   + S+ +  +  E+H   ++  +
Sbjct: 258 LIGGYSRSNLANEAFTLFNEMLLQLRPNAVTMACILPAAASLSSLERGREMHAYAVRRGY 317

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
            ED  + +ALVDMY KCG +  ARR+FD +  KN+ +WT MI GYG +G    A+ LF  
Sbjct: 318 LEDNFVANALVDMYVKCGALLLARRLFDMLTNKNLISWTIMIAGYGMHGRGRDAIALFEQ 377

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           M+   +QP+  +F   L AC H+GL D+G   F +M  ++ ++PK++HYACMVDLL   G
Sbjct: 378 MKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAMRNEHRIEPKLKHYACMVDLLCHTG 437

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
           +L++A +F+  MP +P+S +W +LL  CR+H +V++A   A  +F+L   +  G YV L+
Sbjct: 438 NLKEAYEFIETMPIEPDSSIWVSLLRGCRIHRNVKLAEKVAEMVFELEPEN-TGYYVLLA 496

Query: 461 NTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           N  A A +W++V +L+ K+  RG+ ++TGCSW+
Sbjct: 497 NIYAEAERWEAVRKLKNKVGGRGLRENTGCSWI 529



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 102/435 (23%), Positives = 204/435 (46%), Gaps = 17/435 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           GL +H ++ K G      +   L+  + K   ++ A  +FDE+PQR + ++N +I G   
Sbjct: 3   GLVVHGYLVKYGFGAQCAVCNALISFYAKSNRIEDALMVFDEMPQRDIISWNSIIGGCAS 62

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  ++++ L  ++   G+  D  T   ++ A  C +S+      +G +VH   ++  + 
Sbjct: 63  NGLYDKAVELFVRMWLEGQELDSTTLLSVMPA--CVQSHYSF---IGGVVHGYSVRTGLI 117

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           ++  L  AL+D Y           +F  M +KNV+  T+MI+ +   G  +    +F++ 
Sbjct: 118 SETSLGNALLDMYSNCSDWRSTNKIFRNMEQKNVVSWTAMITSYTRAGHFDKVAGLFQEM 177

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               +  D+    + ++ ++ + E+ +    VH   I+N   E + + +AL++MY KCG 
Sbjct: 178 GLEGIRPDVFAITSALDAFAGN-ESLKHGKSVHGYAIRNGIEEVLPVANALMEMYVKCGY 236

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +++AR +FDH+ +K+  +W ++I GY ++   N+A  LF  M    ++PN VT    L A
Sbjct: 237 MEEARFIFDHVTKKDTISWNTLIGGYSRSNLANEAFTLFNEML-LQLRPNAVTMACILPA 295

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
                 +++GRE+     R   ++      A +VD+  + G+L  A + + +M    N  
Sbjct: 296 AASLSSLERGREMHAYAVRRGYLEDNFVANA-LVDMYVKCGALLLARR-LFDMLTNKNLI 353

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG----KWDSVTEL 475
            W  +++   +H     A     ++         G++ A+    + +G     W     +
Sbjct: 354 SWTIMIAGYGMHGRGRDAIALFEQMKGSGIQPDAGSFSAILYACSHSGLRDEGWRFFNAM 413

Query: 476 REKMKLRGVLKDTGC 490
           R + ++   LK   C
Sbjct: 414 RNEHRIEPKLKHYAC 428


>gi|359473281|ref|XP_003631282.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Vitis vinifera]
          Length = 615

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 150/433 (34%), Positives = 230/433 (53%), Gaps = 44/433 (10%)

Query: 96  LKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE--RPDGYTFSMIL 153
           L Y+ Q+ D     TL  +N MI  + K+     S     +++ S     PD YTF+ ++
Sbjct: 59  LHYSNQVLDNSQNPTLFTFNSMIRAHSKSSTPHRSFHFYSRILHSAGYLAPDNYTFTFLV 118

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
           + S        L    G  VH   +K   + D  + + L+  Y + G       VF  + 
Sbjct: 119 RTSAQL-----LAHGTGSSVHGAAVKYGFEYDPHVQSGLIYMYAELGGLDACHRVFSSIC 173

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV-- 271
           E +++C T+M+S     G V  A ++F K   KD + +NAMI GY +    +R+AL +  
Sbjct: 174 EPDLVCQTAMVSACAKMGDVGFARKLFDKMSHKDPIAWNAMISGY-VQCGQSREALSLFN 232

Query: 272 ---------------------------------HCQLIKNVFFEDVKLGSALVDMYAKCG 298
                                            H  + +N     + LG+AL+DMYAKCG
Sbjct: 233 LMQREGVKVNEVSMVSVLSACSHLGALDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCG 292

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            ++ A  VF  M++KNV+TW+S I G   NG   + LELF +M++  VQPN +TF+  L 
Sbjct: 293 NMNKAMEVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLR 352

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
            C   GLV++GR+ FESM + Y ++P++EHY CMVDL GRAG L++AL F+  MP +P+ 
Sbjct: 353 GCSVVGLVEEGRKHFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHV 412

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
             W ALL++C+++ ++EM  +A+ +I +L A +  GAYV LSN  A +  WD V+ +R+ 
Sbjct: 413 GAWGALLNACKIYRNMEMGELASRKIVELEAKNH-GAYVLLSNIYADSKDWDRVSNVRQT 471

Query: 479 MKLRGVLKDTGCS 491
           M ++GV K  GCS
Sbjct: 472 MNVKGVRKQPGCS 484



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/242 (28%), Positives = 120/242 (49%), Gaps = 18/242 (7%)

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           K G + +A ++FD++  +   A+N MI+GY++ GQ  E+LSL   +   G + +    SM
Sbjct: 189 KMGDVGFARKLFDKMSHKDPIAWNAMISGYVQCGQSREALSLFNLMQREGVKVN--EVSM 246

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           +   S C         + GR  HA I +  ++    L TAL+D Y K G  + A  VF  
Sbjct: 247 VSVLSACSHLGA---LDQGRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAMEVFWG 303

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSIS--IETA 265
           M EKNV   +S I G    G  E   E+F    + +V+ + + + +++ G S+   +E  
Sbjct: 304 MKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCSVVGLVEEG 363

Query: 266 RKALEVHCQLIKNVFFEDVKLG--SALVDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMI 322
           RK    H + +  V+  + +L     +VD+Y + G +D+A    + M  + +V  W +++
Sbjct: 364 RK----HFESMSKVYGIEPRLEHYGCMVDLYGRAGHLDEALNFINSMPVRPHVGAWGALL 419

Query: 323 DG 324
           + 
Sbjct: 420 NA 421



 Score = 42.4 bits (98), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 27/117 (23%), Positives = 54/117 (46%), Gaps = 3/117 (2%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           N ++  S+ SA  H    D    G   HA+I +  ++    +   L+ ++ KCG +  A 
Sbjct: 242 NEVSMVSVLSACSHLGALDQ---GRWAHAYIERNKLRMTLTLGTALIDMYAKCGNMNKAM 298

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           ++F  + ++ +  ++  I G   NG  E+ L L   +     +P+  TF  +L+  +
Sbjct: 299 EVFWGMKEKNVYTWSSAIGGLAMNGAGEKCLELFSLMKQDSVQPNEITFVSVLRGCS 355


>gi|147840590|emb|CAN72716.1| hypothetical protein VITISV_032470 [Vitis vinifera]
          Length = 694

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 156/445 (35%), Positives = 249/445 (55%), Gaps = 26/445 (5%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHL--KCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           +IHA + +TG+  +   + +L+         +L YA Q+FD++P   L  +N +I  Y  
Sbjct: 53  QIHAQMLRTGLFFDPFSASRLITAAALSPFPSLDYAQQVFDQIPHPNLYTWNTLIRAYAS 112

Query: 124 NGQVEESLSL-VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +    +SL + +R L  S + PD +TF  ++KA++            G+  H  ++K  +
Sbjct: 113 SSNPHQSLLIFLRMLHQSPDFPDKFTFPFLIKAASELEELFT-----GKAFHGMVIKVLL 167

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            +D  +  +L+  Y K G+      VF     ++V+   SMI+ F+  G  E+A E+F++
Sbjct: 168 GSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAFVQGGCPEEALELFQE 227

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCG 298
            +E   V  N +     +S    +   E    VH  + +N   E + L +A++DMY KCG
Sbjct: 228 -METQNVKPNGITMVGVLSACAKKSDFEFGRWVHSYIERNRIXESLTLSNAMLDMYTKCG 286

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGK------------NGNPNQALELFCMMQECCV 346
            ++DA+R+FD M +K++ +WT+M+ GY K            +G+   A+ LF  MQE  V
Sbjct: 287 SVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAMHGHGKDAIALFSKMQEDKV 346

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
           +PN VTF   L AC H GLV++GR  F  ME  Y + P ++HYACMVD+LGRAG LE+A+
Sbjct: 347 KPNAVTFTNILCACSHVGLVEEGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAV 406

Query: 407 KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
           + + +MP  P + VW ALL +C +H++V +A  A +++ +L   +  GAYV LSN  A A
Sbjct: 407 ELIEKMPMAPAASVWGALLGACTIHENVVLAEQACSQLIELEPGNH-GAYVLLSNIYAKA 465

Query: 467 GKWDSVTELREKMKLRGVLKDTGCS 491
           GKWD V+ LR+ M+  G+ K+ GCS
Sbjct: 466 GKWDRVSGLRKLMRDVGLKKEPGCS 490



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/300 (23%), Positives = 129/300 (43%), Gaps = 30/300 (10%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           F G   H  + K  +  +  I   L+  + KCG L    ++F   P+R + ++N MI  +
Sbjct: 153 FTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNXPRRDVVSWNSMITAF 212

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           ++ G  EE+L L +++ +   +P+G T   +L  S C + +       GR VH+ I +  
Sbjct: 213 VQGGCPEEALELFQEMETQNVKPNGITMVGVL--SACAKKS---DFEFGRWVHSYIERNR 267

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +     L  A++D Y K G    A+ +FD M EK+++  T+M+ G+   G  + A+ +  
Sbjct: 268 IXESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAKIGEYDAAQGLAM 327

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
               KD +   + ++   +                  V F ++    + V      G ++
Sbjct: 328 HGHGKDAIALFSKMQEDKVKPNA--------------VTFTNILCACSHV------GLVE 367

Query: 302 DARRVFDHMQ-----QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           + R  F+ M+        V  +  M+D  G+ G   +A+EL   M        +   LGA
Sbjct: 368 EGRTFFNQMELVYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGA 427


>gi|449433319|ref|XP_004134445.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Cucumis sativus]
          Length = 606

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 154/443 (34%), Positives = 246/443 (55%), Gaps = 20/443 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA   K G+  +  +   +  ++ K G L  A ++FDE+P R L  +N  I+  + 
Sbjct: 127 GKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWNAYISNSVL 186

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G+ E+S+    +L+  G +PD  TF   L A   C   + L    G  +H  I++    
Sbjct: 187 HGRPEDSVIAFIELLRVGGKPDSITFCAFLNA---CSDKLGL--GPGCQLHGFIIRSGYG 241

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +  +   L+D Y K G+   + +VFD M E+N +  +S+I+ ++     E A  +F + 
Sbjct: 242 QNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCLFLRA 301

Query: 244 VEKDIVVYNAMIEGYSIS------IETAR--KALEVHCQLIKNVFFEDVKLGSALVDMYA 295
            ++DI   + M+     +      IE  R  +AL V   + +N+F     + SALVDMY 
Sbjct: 302 RKEDIEPTDFMVSSVLCACAGLSEIEFGRSVQALAVKACVEQNIF-----VASALVDMYG 356

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNYVTFL 354
           KCG ID+A + F+ M ++N+ +W +++ GY   G+ N+A+ L   M     + P+YV+ +
Sbjct: 357 KCGSIDNAEQAFNAMPERNLVSWNALLGGYAHQGHANKAVALLEEMTSAAGIVPSYVSLI 416

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
            ALSAC  AG +  G +IFESM+  Y ++P  EHYAC+VDLLGRAG +E A  F+  MP 
Sbjct: 417 CALSACSRAGDLKTGMKIFESMKERYGVEPGPEHYACLVDLLGRAGMVECAYDFIKRMPF 476

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
            P   +W ALL +CR+H   E+  +AA ++F+L+  D  G +V LSN  AA G+W+ VT 
Sbjct: 477 PPTISIWGALLGACRMHGKPELGKLAAEKLFELDPKDS-GNHVVLSNMFAATGRWEEVTV 535

Query: 475 LREKMKLRGVLKDTGCSWVGTES 497
           +R +MK  G+ K  G SW+  +S
Sbjct: 536 VRNEMKEVGIKKGAGFSWITVDS 558



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 117/448 (26%), Positives = 210/448 (46%), Gaps = 18/448 (4%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLI-LHLKCGALKYAGQ 101
           L+  SL S ++  ++  +   G   HA I KT   P        L+ ++ K   L  A  
Sbjct: 4   LSQNSLASVVELAVSVRSSLLGRAAHAQILKTLKTPFPAFLYNHLVNMYAKLDHLNSAKL 63

Query: 102 MFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161
           + +  P R++  +  +IAG ++NG    +L     ++S   RP+ +TF  +LKAST  R 
Sbjct: 64  ILELAPCRSVVTWTALIAGSVQNGCFVSALLHFSDMLSDCVRPNDFTFPCVLKASTGLRM 123

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
           +       G+ +HA  +K  +  D  +  ++ D Y K G  + A  VFD M  +N+    
Sbjct: 124 DTT-----GKQLHALAVKEGLINDVFVGCSVFDMYSKLGFLNDAYKVFDEMPHRNLETWN 178

Query: 222 SMISGFMSQGFVEDAE----EIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIK 277
           + IS  +  G  ED+     E+ R   + D + + A +   S  +       ++H  +I+
Sbjct: 179 AYISNSVLHGRPEDSVIAFIELLRVGGKPDSITFCAFLNACSDKLGLG-PGCQLHGFIIR 237

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
           + + ++V + + L+D Y KCG+++ +  VFD M ++N  +W+S+I  Y +N    +A  L
Sbjct: 238 SGYGQNVSVSNGLIDFYGKCGEVECSEMVFDRMGERNSVSWSSLIAAYVQNNEEEKASCL 297

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
           F   ++  ++P        L AC     ++ GR + +++     ++  +   + +VD+ G
Sbjct: 298 FLRARKEDIEPTDFMVSSVLCACAGLSEIEFGRSV-QALAVKACVEQNIFVASALVDMYG 356

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457
           + GS++ A +    MPE+ N   W ALL     H       +A  E     A   P +YV
Sbjct: 357 KCGSIDNAEQAFNAMPER-NLVSWNALLGG-YAHQGHANKAVALLEEMTSAAGIVP-SYV 413

Query: 458 ALSNTLAA---AGKWDSVTELREKMKLR 482
           +L   L+A   AG   +  ++ E MK R
Sbjct: 414 SLICALSACSRAGDLKTGMKIFESMKER 441


>gi|356502400|ref|XP_003520007.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Glycine max]
          Length = 591

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 154/466 (33%), Positives = 269/466 (57%), Gaps = 45/466 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G KIHA + KTG++ +  +   L+ ++ + G ++   Q+F+E+P+R   ++N MI+GY++
Sbjct: 127 GEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVR 186

Query: 124 NGQVEESLSLVRKL-VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
             + EE++ + R++ + S E+P+  T    L A    R+       LG+ +H  I   ++
Sbjct: 187 CKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRN-----LELGKEIHDYIAN-EL 240

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
               ++  AL+D Y K G  S AR +FD M+ KNV C TSM++G++  G ++ A  +F +
Sbjct: 241 DLTPIMGNALLDMYCKCGCVSVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFER 300

Query: 243 TVEKDIVVYNAMIEGY--------SISI--ETARKALE---------------------- 270
           +  +D+V++ AMI GY        +I++  E   + +E                      
Sbjct: 301 SPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQG 360

Query: 271 --VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
             +H  + +N    D  + +AL++MYAKCG I+ +  +F+ ++  +  +WTS+I G   N
Sbjct: 361 KWIHNYIDENRIKMDAVVSTALIEMYAKCGCIEKSLEIFNGLKDMDTTSWTSIICGLAMN 420

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G  ++ALELF  MQ C ++P+ +TF+  LSACGHAGLV++GR++F SM   Y ++P +EH
Sbjct: 421 GKTSEALELFEAMQTCGLKPDDITFVAVLSACGHAGLVEEGRKLFHSMSSIYHIEPNLEH 480

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDV---WAALLSSCRLHDDVEMANIAANEIF 445
           Y C +DLLGRAG L++A + V ++P++ N  +   + ALLS+CR + +++M    A  + 
Sbjct: 481 YGCFIDLLGRAGLLQEAEELVKKLPDQNNEIIVPLYGALLSACRTYGNIDMGERLATALA 540

Query: 446 KLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
           K+ ++D    +  L++  A+A +W+ V ++R KMK  G+ K  G S
Sbjct: 541 KVKSSD-SSLHTLLASIYASADRWEDVRKVRSKMKDLGIKKVPGYS 585



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/381 (25%), Positives = 178/381 (46%), Gaps = 46/381 (12%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHL--KCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           +I AHI   G++ + +I  KL+   +    G   YA ++F+ +   +L  YN MI  ++K
Sbjct: 26  QIQAHIFCFGLQQDRDILNKLMAFSMDSSLGDFNYANRIFNHIHHPSLFIYNLMIKAFVK 85

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G +  ++SL ++L   G  PD YT+  +LK   C    +   R  G  +HA ++K  ++
Sbjct: 86  RGSLRSAISLFQQLRERGVWPDNYTYPYVLKGIGC----IGEVRE-GEKIHAFVVKTGLE 140

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +  +L+D Y + G       VF+ M E++ +    MISG++     E+A +++R+ 
Sbjct: 141 FDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDAVSWNIMISGYVRCKRFEEAVDVYRRM 200

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQL---IKNVFFEDVKLGSALVDMYAKCGKI 300
             +     N      ++S     + LE+  ++   I N       +G+AL+DMY KCG +
Sbjct: 201 QMESNEKPNEATVVSTLSACAVLRNLELGKEIHDYIANELDLTPIMGNALLDMYCKCGCV 260

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ--------------------------- 333
             AR +FD M  KNV  WTSM+ GY   G  +Q                           
Sbjct: 261 SVAREIFDAMIVKNVNCWTSMVTGYVICGQLDQARYLFERSPSRDVVLWTAMINGYVQFN 320

Query: 334 ----ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
               A+ LF  MQ   V+P+    +  L+ C   G +++G+ I   ++ +   + KM+  
Sbjct: 321 HFEDAIALFGEMQIRGVEPDKFIVVTLLTGCAQLGALEQGKWIHNYIDEN---RIKMDAV 377

Query: 390 A--CMVDLLGRAGSLEQALKF 408
               ++++  + G +E++L+ 
Sbjct: 378 VSTALIEMYAKCGCIEKSLEI 398



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 70/309 (22%), Positives = 147/309 (47%), Gaps = 21/309 (6%)

Query: 200 GKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK----DIVVYNAMI 255
           G  +YA  +F+ +   ++     MI  F+ +G +  A  +F++  E+    D   Y  ++
Sbjct: 56  GDFNYANRIFNHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYTYPYVL 115

Query: 256 EGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
           +G    I   R+  ++H  ++K     D  + ++L+DMYA+ G ++   +VF+ M +++ 
Sbjct: 116 KGIG-CIGEVREGEKIHAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQVFEEMPERDA 174

Query: 316 FTWTSMIDGYGKNGNPNQALELFCMMQ-ECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374
            +W  MI GY +     +A++++  MQ E   +PN  T +  LSAC     ++ G+EI +
Sbjct: 175 VSWNIMISGYVRCKRFEEAVDVYRRMQMESNEKPNEATVVSTLSACAVLRNLELGKEIHD 234

Query: 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDV 434
            +  +  + P M +   ++D+  + G +  A +    M  K N + W ++++   +   +
Sbjct: 235 YIANELDLTPIMGN--ALLDMYCKCGCVSVAREIFDAMIVK-NVNCWTSMVTGYVICGQL 291

Query: 435 EMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD------- 487
           + A      +F+ + +     + A+ N       ++    L  +M++RGV  D       
Sbjct: 292 DQARY----LFERSPSRDVVLWTAMINGYVQFNHFEDAIALFGEMQIRGVEPDKFIVVTL 347

Query: 488 -TGCSWVGT 495
            TGC+ +G 
Sbjct: 348 LTGCAQLGA 356



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/181 (23%), Positives = 83/181 (45%), Gaps = 17/181 (9%)

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           M +  G  + A R+F+H+   ++F +  MI  + K G+   A+ LF  ++E  V P+  T
Sbjct: 51  MDSSLGDFNYANRIFNHIHHPSLFIYNLMIKAFVKRGSLRSAISLFQQLRERGVWPDNYT 110

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH--YAC--MVDLLGRAGSLEQALKF 408
           +   L   G  G V +G +I       + +K  +E   Y C  ++D+    G +E   + 
Sbjct: 111 YPYVLKGIGCIGEVREGEKI-----HAFVVKTGLEFDPYVCNSLMDMYAELGLVEGFTQV 165

Query: 409 VLEMPEKPNSDVWAALLSS---CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465
             EMPE+ ++  W  ++S    C+  ++     +      ++ +N++P     +S   A 
Sbjct: 166 FEEMPER-DAVSWNIMISGYVRCKRFEEA----VDVYRRMQMESNEKPNEATVVSTLSAC 220

Query: 466 A 466
           A
Sbjct: 221 A 221


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 154/434 (35%), Positives = 246/434 (56%), Gaps = 12/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA+  K  +  +  +   L+ ++ KC +L  A ++F+ +    L +YN MI GY +
Sbjct: 362 GRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSR 421

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
             ++ E+L L R++  S   P    F  +L  S            L   +H  I+K  V 
Sbjct: 422 QDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYH-----LELSNQIHGLIIKYGVS 476

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR-- 241
            D+   +AL+D Y K  +   AR+VF+ + +K+++  T+M SG+  Q   E++ ++++  
Sbjct: 477 LDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKCL 536

Query: 242 --KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               ++ +   + A+I   S +I + R   + H Q+IK  F +D  + + LVDMYAK G 
Sbjct: 537 QMSRLKPNEFTFAAVITAAS-NIASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAKSGS 595

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I++A + F     K+   W SMI  Y ++G   +AL++F  M    ++PNYVTF+G LSA
Sbjct: 596 IEEAHKAFISTNWKDTACWNSMIATYAQHGEAEKALQVFEDMIMEGLKPNYVTFVGVLSA 655

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H GL+D G + F+SM + + ++P +EHY CMV LLGRAG L +A +F+ +MP K  + 
Sbjct: 656 CSHTGLLDLGFDHFDSMSQ-FGIEPGIEHYVCMVSLLGRAGKLYEAKEFIEKMPIKQAAV 714

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW +LLS+CR+  +VE+   AA      N  D  G+YV LSN  A+ G W +V  LREKM
Sbjct: 715 VWRSLLSACRVSGNVELGTYAAEMAISCNPAD-SGSYVLLSNIFASKGMWVNVRRLREKM 773

Query: 480 KLRGVLKDTGCSWV 493
            + GV+K+ GCSW+
Sbjct: 774 DISGVVKEPGCSWI 787



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 200/378 (52%), Gaps = 12/378 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH ++ ++G+  + ++    +  + KC  ++   ++FD +  + + ++  +IAG ++
Sbjct: 261 GKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQ 320

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N    ++L L  ++   G  PD +  + +L +   C S V L +  GR VHA  +K ++ 
Sbjct: 321 NSFHRDALDLFVEMARMGWNPDAFGCTSVLNS---CGSLVALEK--GRQVHAYAIKVNID 375

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK- 242
            DD +   L+D Y K    + AR VF++M   +++   +MI G+  Q  + +A ++FR+ 
Sbjct: 376 NDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREM 435

Query: 243 --TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
             ++    ++    + G S S+     + ++H  +IK     D   GSAL+D+Y+KC ++
Sbjct: 436 RLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKYGVSLDEFAGSALIDVYSKCSRV 495

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
            DAR VF+ +Q K++  WT+M  GY +     ++L+L+  +Q   ++PN  TF   ++A 
Sbjct: 496 GDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFTFAAVITAA 555

Query: 361 GHAGLVDKGREIF-ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
            +   +  G++   + ++  +   P + +   +VD+  ++GS+E+A K  +    K ++ 
Sbjct: 556 SNIASLRHGQQFHNQVIKMGFDDDPFVAN--TLVDMYAKSGSIEEAHKAFISTNWK-DTA 612

Query: 420 VWAALLSSCRLHDDVEMA 437
            W +++++   H + E A
Sbjct: 613 CWNSMIATYAQHGEAEKA 630



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 182/400 (45%), Gaps = 32/400 (8%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
            L+IH  + K G   +  +   L+  + K   +  A  +FD L  +T   +  +IAGY K
Sbjct: 160 ALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSK 219

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G+ + SL L  ++      PD Y  S +L A    +         G+ +H  +L+  + 
Sbjct: 220 QGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSACLMLKF-----LEGGKQIHCYVLRSGIV 274

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
            D  +    +D Y K  K    R +FD M++KNV+  T++I+G M   F  DA ++F   
Sbjct: 275 MDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEM 334

Query: 241 -RKTVEKDIVVYNAMIE--GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
            R     D     +++   G  +++E  R   +VH   IK     D  + + L+DMYAKC
Sbjct: 335 ARMGWNPDAFGCTSVLNSCGSLVALEKGR---QVHAYAIKVNIDNDDFVKNGLIDMYAKC 391

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN---YVTFL 354
             + DAR+VF+ M   ++ ++ +MI+GY +     +AL+LF  M+     P    +V+ L
Sbjct: 392 DSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLL 451

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
           G  ++  H  L ++       +   Y +       + ++D+  +   +  A + V E  +
Sbjct: 452 GVSASLYHLELSNQ----IHGLIIKYGVSLDEFAGSALIDVYSKCSRVGDA-RLVFEEIQ 506

Query: 415 KPNSDVWAALLS----------SCRLHDDVEMANIAANEI 444
             +  VW A+ S          S +L+  ++M+ +  NE 
Sbjct: 507 DKDIVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEF 546



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 170/352 (48%), Gaps = 21/352 (5%)

Query: 66  KIHAHITKTGV-KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           KIH+ I   G  K +  +   LL  + K   + +A ++FD +  + L  ++ M++ Y  +
Sbjct: 59  KIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTHH 118

Query: 125 GQVEESLSL-VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
               E+L L V+ + S  E+P+ Y  + +++A T      P        +H  ++K    
Sbjct: 119 SHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNP-----ALQIHGLVVKGGYV 173

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  + T+L+D Y K      AR++FD +  K     T++I+G+  QG  + + ++F + 
Sbjct: 174 QDVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQM 233

Query: 244 VE----KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            E     D  V ++++    + ++      ++HC ++++    DV + +  +D Y KC K
Sbjct: 234 KEGHVCPDKYVLSSVLSA-CLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHK 292

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +   R++FD M  KNV +WT++I G  +N     AL+LF  M      P+       L++
Sbjct: 293 VQLGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNS 352

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEH----YACMVDLLGRAGSLEQALK 407
           CG    ++KGR++       Y++K  +++       ++D+  +  SL  A K
Sbjct: 353 CGSLVALEKGRQV-----HAYAIKVNIDNDDFVKNGLIDMYAKCDSLTDARK 399



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 131/285 (45%), Gaps = 15/285 (5%)

Query: 171 RMVHAQILKCDVKADDV-LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           + +H++I+       D+ L   L+ +Y K    ++A  +FD M  KN++  +SM+S +  
Sbjct: 58  KKIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTH 117

Query: 230 QGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
                +A  +F    R   EK      A +            AL++H  ++K  + +DV 
Sbjct: 118 HSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNPALQIHGLVVKGGYVQDVY 177

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           + ++L+D Y K   IDDAR +FD +Q K  FTWT++I GY K G    +L+LF  M+E  
Sbjct: 178 VCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGH 237

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
           V P+       LSAC     ++ G++I   + R   +   +      +D   +   ++  
Sbjct: 238 VCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRS-GIVMDVSMVNGFIDFYFKCHKVQLG 296

Query: 406 LKFVLEMPEKPNSDVWAALLSSC---RLHDD-----VEMANIAAN 442
            K    M +K N   W  +++ C     H D     VEMA +  N
Sbjct: 297 RKLFDRMVDK-NVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWN 340


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  269 bits (688), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 162/460 (35%), Positives = 257/460 (55%), Gaps = 16/460 (3%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           +P+T TSL  A     N      G  +H ++   G+  +  +    + ++ K G ++ A 
Sbjct: 230 SPITMTSLIQACGGIGNLK---LGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESAR 286

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
            +F ++P R L ++N MI+G ++NG V ES  L  +LV S     G+  + I+     C 
Sbjct: 287 WVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRS---SGGFDLTTIVSLLQGCS 343

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
               L    G+++H   ++   +++ +L TA+VD Y K G    A  VF+ M ++NVI  
Sbjct: 344 QTASLAT--GKILHGCAIR-SFESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITW 400

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLI 276
           T+M+ G    G  EDA  +F +  E+ I    V + +++   +  + + ++   +H  L 
Sbjct: 401 TAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCA-HLGSLKRGRSIHGHLF 459

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQAL 335
           +  F  D+   +ALVDMYAKCGKI+ A R+F H    K+V  W SMI GYG +G+  QA+
Sbjct: 460 RLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAV 519

Query: 336 ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDL 395
            ++  M E  ++PN  TFL  LSAC H+ LV++G  +F SMERD++++P  +HYAC+VDL
Sbjct: 520 GIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMERDHNIRPIEKHYACLVDL 579

Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA 455
           L RAG  E+A   + +MP +P + V  ALLS CR H ++ +    ++++  L+A + PG 
Sbjct: 580 LSRAGRFEEAQALIEKMPFQPGTAVLEALLSGCRTHKNINLGIQTSDKLLALDAMN-PGI 638

Query: 456 YVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGT 495
           Y+ LSN  A A +WD V  +R  M+ RG+ K  G S V T
Sbjct: 639 YIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTPGYSLVET 678



 Score =  167 bits (424), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 124/459 (27%), Positives = 218/459 (47%), Gaps = 48/459 (10%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++I +   + G++ N  +   ++   +K G +  A ++FD +P + +  +N +I GY++
Sbjct: 149 GMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCWNSIIGGYVQ 208

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G  + +  L  ++  SG +P   T + +++A   C     L   LG+ +H  +L   + 
Sbjct: 209 AGCFDVAFQLFFEMHGSGIKPSPITMTSLIQA---CGGIGNL--KLGKCMHGYVLGLGLG 263

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D ++ T+ VD Y K G    AR VF  M  +N++   +MISG +  G V ++ ++F + 
Sbjct: 264 NDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRL 323

Query: 244 VEK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           V      D+    ++++G S +   A   +   C +    F  ++ L +A+VD+Y+KCG 
Sbjct: 324 VRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAI--RSFESNLILSTAIVDLYSKCGS 381

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +  A  VF+ M+ +NV TWT+M+ G  +NG+   AL LF  MQE  +  N VTF+  + +
Sbjct: 382 LKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHS 441

Query: 360 CGHAGLVDKGREIFESMER------DYSMKPKMEHYA----------------------- 390
           C H G + +GR I   + R        +M   ++ YA                       
Sbjct: 442 CAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVL 501

Query: 391 --CMVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSCRLHDDVEMANIAANEIF 445
              M+   G  G   QA+    +M E   KPN   + +LLS+C  H  +    I+     
Sbjct: 502 WNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACS-HSRLVEQGISLFNSM 560

Query: 446 KLNANDRP--GAYVALSNTLAAAGKWDSVTELREKMKLR 482
           + + N RP    Y  L + L+ AG+++    L EKM  +
Sbjct: 561 ERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQ 599



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 104/429 (24%), Positives = 194/429 (45%), Gaps = 31/429 (7%)

Query: 38  SLSNPL---TATSLPSALQHYIN-----SDTPFYGLKIHAHITKTGVKPNTNISIKLLIL 89
           S  NPL       LP+ + ++++     S    +    HA I    +  +  ++ KL+  
Sbjct: 14  STCNPLKDGQFNQLPTIIHNFLSLLRESSKNLIWVKSTHAQIITNSLSTDQFVATKLVKA 73

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149
           +    +L+ A  +FD+  Q      N M+ GYL++G+  E+L L   + S     D  + 
Sbjct: 74  YSDLRSLEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSC 133

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVF 209
           +  LKA   C S+  L   +G  + +  ++  ++ +  + ++++   VK GK   A+ VF
Sbjct: 134 TFALKA---CASS--LDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVF 188

Query: 210 DMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETA 265
           D M  K+V+C  S+I G++  G  + A ++F +     ++   +   ++I+     I   
Sbjct: 189 DGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACG-GIGNL 247

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
           +    +H  ++      D+ + ++ VDMY+K G I+ AR VF  M  +N+ +W +MI G 
Sbjct: 248 KLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGC 307

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
            +NG   ++ +LF  +       +  T +  L  C     +  G+ +     R  S +  
Sbjct: 308 VRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIR--SFESN 365

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL----------SSCRLHDDVE 435
           +     +VDL  + GSL+QA  FV    +  N   W A+L           + RL   ++
Sbjct: 366 LILSTAIVDLYSKCGSLKQA-TFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQ 424

Query: 436 MANIAANEI 444
              IAAN +
Sbjct: 425 EEGIAANSV 433


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 144/456 (31%), Positives = 253/456 (55%), Gaps = 10/456 (2%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           + L +T+L S L     S   F G  +H +  KTG+   T+++  LL ++  C       
Sbjct: 507 HELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTN 566

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           Q+F  + Q+ + ++  MI  Y + G  ++   L++++V  G +PD +  + +L       
Sbjct: 567 QIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFA--- 623

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
            +  L +  G+ VH   ++  ++    +  AL++ YV       AR+VFD +  K++I  
Sbjct: 624 GDESLKQ--GKSVHGYAIRNGMEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISW 681

Query: 221 TSMISGFMSQGFVEDAEEIFRKTV---EKDIVVYNAMIEGYSISIETARKALEVHCQLIK 277
            ++I G+    F  ++  +F   +   + + V    ++   + SI +  +  E+H   ++
Sbjct: 682 NTLIGGYSRNNFANESFSLFSDMLLQFKPNTVTMTCILPAVA-SISSLERGREIHAYALR 740

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
             F ED    +ALVDMY KCG +  AR +FD + +KN+ +WT MI GYG +G    A+ L
Sbjct: 741 RGFLEDSYTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVAL 800

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
           F  M+   V+P+  +F   L AC H+GL  +G + F +M ++Y ++PK++HY C+VDLL 
Sbjct: 801 FEQMRGSGVEPDTASFSAILYACCHSGLTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLS 860

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457
             G+L++A +F+  MP +P+S +W +LL  CR+H DV++A   A+ +FKL   +  G YV
Sbjct: 861 HTGNLKEAFEFIESMPIEPDSSIWVSLLHGCRIHRDVKLAEKVADRVFKLEPEN-TGYYV 919

Query: 458 ALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            L+N  A A +W++V +L+ K+  RG+ ++TGCSW+
Sbjct: 920 LLANIYAEAERWEAVKKLKNKIGGRGLRENTGCSWI 955



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 120/439 (27%), Positives = 191/439 (43%), Gaps = 57/439 (12%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH  + K G+     ++  L+ L+ +CG ++ A Q+FD +  R   ++N  I+GY  
Sbjct: 217 GEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFS 276

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC--- 180
           NG  + ++ L  K+ S G      T   +L A  C      L   +G++VH   +K    
Sbjct: 277 NGWHDRAVDLFSKMWSEGTEISSVTVLSVLPA--CAELGFEL---VGKVVHGYSMKSGLL 331

Query: 181 -DVKA-----DDVLYTALVDSYVKGGKTSYARIVFDMMLEK-NVICSTSMISGFMSQGFV 233
            D+++     D+ L + LV  YVK G    AR VFD M  K NV     ++ G+      
Sbjct: 332 WDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEF 391

Query: 234 EDAEEIFRKTVEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSA 289
           E++  +F +  E  I       + +++  +  +  AR  L  H  L+K  F     + +A
Sbjct: 392 EESLLLFEQMHELGITPDEHALSCLLKCIT-CLSCARDGLVAHGYLVKLGFGTQCAVCNA 450

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349
           L+  YAK   ID+A  VFD M  ++  +W S+I G   NG  ++A+ELF  M     + +
Sbjct: 451 LISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELD 510

Query: 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFV 409
             T L  L AC  +     GR +       YS+K           L+G   SL  AL   
Sbjct: 511 STTLLSVLPACARSHYWFVGRVV-----HGYSVK---------TGLIGET-SLANAL--- 552

Query: 410 LEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKW 469
           L+M    N   W                  + N+IF+  A     ++ A+  +   AG +
Sbjct: 553 LDM--YSNCSDWH-----------------STNQIFRNMAQKNVVSWTAMITSYTRAGLF 593

Query: 470 DSVTELREKMKLRGVLKDT 488
           D V  L ++M L G+  D 
Sbjct: 594 DKVAGLLQEMVLDGIKPDV 612



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/318 (29%), Positives = 145/318 (45%), Gaps = 29/318 (9%)

Query: 74  TGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRT--LSAYNYMIAGYLKNGQVEESL 131
           TG    + +  +L++ +LKCG L  A  +FDE+P R   +  +  +++ Y K G  +E +
Sbjct: 124 TGGIIGSVLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGV 183

Query: 132 SLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTA 191
           SL R++   G  PD +  S +LK   C  S   +    G ++H  + K  +     +  A
Sbjct: 184 SLFRQMQCCGVSPDAHAVSCVLK---CIASLGSITE--GEVIHGLLEKLGLGEACAVANA 238

Query: 192 LVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK-----TVEK 246
           L+  Y + G    A  VFD M  ++ I   S ISG+ S G+ + A ++F K     T   
Sbjct: 239 LIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEIS 298

Query: 247 DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK---------LGSALVDMYAKC 297
            + V + +     +  E   K   VH   +K+    D++         LGS LV MY KC
Sbjct: 299 SVTVLSVLPACAELGFELVGKV--VHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKC 356

Query: 298 GKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           G +  ARRVFD M  K NV  W  ++ GY K     ++L LF  M E  + P+       
Sbjct: 357 GDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCL 416

Query: 357 LS-----ACGHAGLVDKG 369
           L      +C   GLV  G
Sbjct: 417 LKCITCLSCARDGLVAHG 434



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 119/254 (46%), Gaps = 25/254 (9%)

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEK--NVICSTSMISGFMSQGFVEDAEEIFRKT- 243
           VL   LV +Y+K G    AR+VFD M  +  +V   TS++S +   G  ++   +FR+  
Sbjct: 131 VLGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQ 190

Query: 244 ---VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
              V  D    + +++  + S+ +  +   +H  L K    E   + +AL+ +Y++CG +
Sbjct: 191 CCGVSPDAHAVSCVLKCIA-SLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCM 249

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           +DA +VFD M  ++  +W S I GY  NG  ++A++LF  M     + + VT L  L AC
Sbjct: 250 EDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPAC 309

Query: 361 GHAGLVDKGREIFESMERDYSMKP----KMEHYACMVD-LLG--------RAGSLEQALK 407
              G      E+   +   YSMK      +E     +D  LG        + G +  A +
Sbjct: 310 AELGF-----ELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARR 364

Query: 408 FVLEMPEKPNSDVW 421
               MP K N  VW
Sbjct: 365 VFDAMPSKGNVHVW 378


>gi|345505208|gb|AEN99828.1| chlororespiratory reduction 4 [Arabis hirsuta]
          Length = 615

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 149/465 (32%), Positives = 246/465 (52%), Gaps = 46/465 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++ H  + KTG+  +  +   L+ L+LKCG L +A Q+FD + QR   +YN MI GY+K
Sbjct: 142 GMQXHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVK 201

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G +E +  L   + S  E+ +  +++ ++         V +  NL   +  +       
Sbjct: 202 CGLIESARELFDLMPS--EKKNLISWNSMINGYAQRADGVDIASNLFDEMPEK------- 252

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D + + +L+D YVK G+   A+ +FD M  ++V+   +M+ G+   GFV  A+ +F + 
Sbjct: 253 -DLISWNSLIDGYVKHGRIEDAKDLFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQM 311

Query: 244 VEKDIVVYNAMIEGY--------SISI-------------ETA--------------RKA 268
            ++D+V YN+M+ GY        +I I             ET                KA
Sbjct: 312 PQRDVVAYNSMMAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKA 371

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
           +++H   ++  F    KLG AL+DMY+KCG I  A  VF+ ++ K++  W +MI G   +
Sbjct: 372 MDMHLYTVEKKFLLGGKLGVALIDMYSKCGSIQQAMGVFERIENKSIDHWNAMIGGLAIH 431

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G    A ++   ++   ++P+ +TF+G L+AC H+GLV +G   FE M+R + ++P+++H
Sbjct: 432 GLGESAFDMLLQIERRSIKPDDITFVGVLNACSHSGLVKEGLLCFELMKRKHKIEPRLQH 491

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
           Y CMVD+L R+G +E A   + EMP +PN  +W   L++C  H + E   + A  +  L 
Sbjct: 492 YGCMVDILSRSGRIELAKNLIEEMPIEPNDVIWRTFLTACSHHKEFETGELVAKHLI-LQ 550

Query: 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           A   P +YV LSN  A+ G W  V  +R  MK R + K  GCSW+
Sbjct: 551 AGYNPSSYVLLSNMYASLGMWKEVRRVRTMMKERKIQKIPGCSWI 595



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 194/412 (47%), Gaps = 58/412 (14%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHL---KCGALKYAGQMFDELPQRTLSA--------Y 114
           KIHA    TG   NTN++ ++++      +    ++A  +F E    +  +        +
Sbjct: 32  KIHARKGTTGFIKNTNLTTRIVLAFAASRRSYLAEFARCVFHEYHVSSXXSGNVEDPFLW 91

Query: 115 NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH 174
           N +I  +    +  ++L L   ++ +G   D ++ S++LKA  C R         G   H
Sbjct: 92  NAVIKSHSHGVEPRKALLLFFLMLKNGVSVDKFSLSLVLKA--CSRLGFV---KEGMQXH 146

Query: 175 AQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVE 234
             + K  + +D  L   L+  Y+K G   +AR VFD M +++ +   SMI G++  G +E
Sbjct: 147 GFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMSQRDSVSYNSMIDGYVKCGLIE 206

Query: 235 DAEEIF--RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVD 292
            A E+F    + +K+++ +N+MI GY+   +     +++   L   +  +D+   ++L+D
Sbjct: 207 SARELFDLMPSEKKNLISWNSMINGYAQRAD----GVDIASNLFDEMPEKDLISWNSLID 262

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM----------- 341
            Y K G+I+DA+ +FD M +++V TW +M+DGY K G  +QA  LF  M           
Sbjct: 263 GYVKHGRIEDAKDLFDKMPRRDVVTWATMVDGYAKLGFVHQAKSLFDQMPQRDVVAYNSM 322

Query: 342 ---------------------QECCVQPNYVTFLGALSACGHAGLVDKGREI-FESMERD 379
                                +E  + P+  T +  LSA    G + K  ++   ++E+ 
Sbjct: 323 MAGYVQNRYHMEAIDIFNDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYTVEKK 382

Query: 380 YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           + +  K+     ++D+  + GS++QA+  V E  E  + D W A++    +H
Sbjct: 383 FLLGGKLG--VALIDMYSKCGSIQQAMG-VFERIENKSIDHWNAMIGGLAIH 431


>gi|297817744|ref|XP_002876755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322593|gb|EFH53014.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 597

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 171/460 (37%), Positives = 259/460 (56%), Gaps = 33/460 (7%)

Query: 42  PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQ 101
           PLT   L   L+   +S  P    KIHA + +TG     ++  +LL   +  G + YA Q
Sbjct: 7   PLTKQMLSELLR--ASSSKPKQLKKIHAVVIRTGFSEKNSLLTQLLENLVLVGDMCYARQ 64

Query: 102 MFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161
           +FDE+P+  +  +N +  GY++N    ES+ L +K+   G RPD +T+  ++KA +    
Sbjct: 65  VFDEMPKPRIFLWNTLFKGYVRNQLPFESVLLYKKMRDLGVRPDEFTYPFVVKAISQLGV 124

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
              LP   G  +HA +LK   +   ++ T LV  Y+K G+ S A  +F+ M  K+++   
Sbjct: 125 ---LP--CGVSLHAHVLKNGFECLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAWN 179

Query: 222 SMISGFMSQGFVEDAEEIFRK----TVEKDIVVYNAMIEGY----SISI-----ETARKA 268
           + I+  +  G    A E F K     V+ D     +M+       S+ I     + ARK 
Sbjct: 180 AFIAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLSACGQLGSLDIGEEIYDRARKE 239

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
            E+ C    N+  E+ +L     DM+ KCG  + AR +FD M+Q+NV +W++MI GY  N
Sbjct: 240 -EIEC----NIIVENARL-----DMHLKCGSTEAARVLFDDMKQRNVVSWSTMIVGYAMN 289

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER--DYSMKPKM 386
           G+  +AL LF MMQ   ++PNYVTFLG LSAC HAGLV++G+  F  M R  D +++P+ 
Sbjct: 290 GDSGEALALFTMMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVRLNDKNLEPRK 349

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446
           EHYACMVDLLGR+G LE+A +F+ +M  +P++ +W ALL +C +H D+ +    A+ + +
Sbjct: 350 EHYACMVDLLGRSGLLEEAYEFIKKMRVEPDTGIWGALLGACAVHRDMILGQKVADVLVE 409

Query: 447 LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLK 486
             A D    +V LSN  AAAGKWD V ++R KM+  G  K
Sbjct: 410 -TAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKK 448


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 162/465 (34%), Positives = 249/465 (53%), Gaps = 46/465 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALK-------------------------- 97
           G +IHAH+ K G   +  I   L+ ++ + G +                           
Sbjct: 148 GKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYAL 207

Query: 98  -----YAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
                 A Q+FDE+P + + ++N MIAGY + G+ +E+L L   +  +   P+  T   +
Sbjct: 208 WGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSV 267

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L  S C +SN     +LG  + + I    + ++  L  AL+D Y K G    AR +FD M
Sbjct: 268 L--SACAQSNA---LDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDM 322

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIE--GYSISIETAR 266
           LE++VI    MI G+      ++A  +FR+     VE   + + +++    +  +I+  +
Sbjct: 323 LERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGK 382

Query: 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
               +H  + KN       L ++L+D+YAKCG I  AR+VFD M+ K++ +W +MI G  
Sbjct: 383 W---IHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLA 439

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM 386
            +G  ++A ELF  M    ++PN +TF+G LSAC HAGLVD G++ F SM +DY + PK 
Sbjct: 440 MHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKS 499

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446
           +HY CM+DLLGRAG  E+A   +  M  KP+  +W +LL +CR H  VE+  + A  +F+
Sbjct: 500 QHYGCMIDLLGRAGLFEEAESLLQNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFE 559

Query: 447 LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
           L   D PGAYV LSN  A AGKWD V  +R ++  RG+ K  GC+
Sbjct: 560 LEP-DNPGAYVLLSNIYAGAGKWDDVARIRTRLNDRGMKKVPGCT 603



 Score =  166 bits (420), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 117/409 (28%), Positives = 205/409 (50%), Gaps = 45/409 (11%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHL---KCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +IHAHI KTG+  NT  ++  LI      + G + YA  +F+ + +  L  +N MI G  
Sbjct: 47  QIHAHIIKTGLH-NTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLS 105

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            +     +L    +++ SG  P+ YTF  +LK+     S      + G+ +HA +LK   
Sbjct: 106 MSLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLAS-----AHEGKQIHAHVLKLGF 160

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            +D  ++T+L++ Y + G+ + A++VFD    ++ I  T++I+G+   G+++ A ++F +
Sbjct: 161 VSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDE 220

Query: 243 TVEKDIVVYNAMIEGYS---------ISIETARKA-LEVHCQLIKNV------------- 279
              KD+V +NAMI GY+         +  E  RKA +  +   I +V             
Sbjct: 221 MPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLG 280

Query: 280 -----FFED------VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
                + ED      +KL +AL+DMY+KCG +  AR +FD M +++V +W  MI GY   
Sbjct: 281 NSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHM 340

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
            +  +AL LF  M    V+P  +TFL  L +C H G +D G+ I   + ++++       
Sbjct: 341 CSYKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINKNFNSVSTSLS 400

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
            + ++DL  + G++  A +    M  K  +  W A++    +H   + A
Sbjct: 401 TS-LIDLYAKCGNIVAARQVFDGMKIKSLAS-WNAMICGLAMHGQADKA 447



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 148/351 (42%), Gaps = 54/351 (15%)

Query: 42  PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQ 101
           P   +++ S L     S+    G  + + I   G+  N  +   L+ ++ KCG L+ A +
Sbjct: 258 PPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARE 317

Query: 102 MFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161
           +FD++ +R + ++N MI GY      +E+L+L R++++SG  P   TF  IL   +C   
Sbjct: 318 LFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILP--SCAHL 375

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
                 +LG+ +HA I K        L T+L+D Y K G    AR VFD M  K++    
Sbjct: 376 GAI---DLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWN 432

Query: 222 SMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFF 281
           +MI G    G  + A E+F K            IE   I+                    
Sbjct: 433 AMICGLAMHGQADKAFELFSKMSSDG-------IEPNEIT-------------------- 465

Query: 282 EDVKLGSALVDMYAKC---GKIDDARRVFDHMQQKNVFT-----WTSMIDGYGKNGNPNQ 333
                    V + + C   G +D  ++ F  M Q    +     +  MID  G+ G   +
Sbjct: 466 --------FVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEE 517

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP 384
           A  L   M+   V+P+   +   L AC   G V+ G  +    ER + ++P
Sbjct: 518 AESLLQNME---VKPDGAIWGSLLGACRDHGRVELGELV---AERLFELEP 562


>gi|449494221|ref|XP_004159483.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 151/437 (34%), Positives = 255/437 (58%), Gaps = 17/437 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G   HA I   G+K +   S  L+ ++ KCG++ +A Q+FDE+P R+L ++N MI    +
Sbjct: 83  GKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQ 142

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG+  E+L L+ ++   G     +T S +L A   C +   L     +++HA  +K  + 
Sbjct: 143 NGEENEALDLLLQMQREGTPFSEFTISSVLCA---CAAKCALSE--CQLLHAFAIKAAMD 197

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +  + TAL+D Y K G    A  VF+ M +++V+  +SM +G++     E A  +FRK 
Sbjct: 198 LNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKA 257

Query: 244 VE----KDIVVYNAMI---EGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
            E     D  + +++I    G +  IE      +V+  L K+ F  ++ + S+L+DMYAK
Sbjct: 258 WETGLKHDQFLMSSVICACAGLAAMIEGK----QVNALLSKSGFCSNIFVASSLIDMYAK 313

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG I+++ +VF  ++++NV  W +MI G  ++    + + LF  MQ+  + PN VTF+  
Sbjct: 314 CGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSV 373

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           LSACGH GLV KG++ F+ M +++ + P + HY+CMVD L RAG + +A   + ++P   
Sbjct: 374 LSACGHMGLVKKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNA 433

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
           ++ +W +LL+SCR H ++E+A +AA ++F +  ++  G Y+ LSN  AA GKWD V ++R
Sbjct: 434 SASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHN-SGNYLLLSNMYAANGKWDEVAKMR 492

Query: 477 EKMKLRGVLKDTGCSWV 493
           + +K   V K+ G SW+
Sbjct: 493 KLLKESDVKKERGKSWI 509


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 149/435 (34%), Positives = 242/435 (55%), Gaps = 13/435 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA + ++    N  ++  LL  + KC  L    ++FDE+P+R   +YN +IA Y  
Sbjct: 255 GHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAW 314

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR-NLGRMVHAQILKCDV 182
           N      L L R++   G       ++ +L  +        LP  ++G+ +HAQ++   +
Sbjct: 315 NQCAATVLRLFREMQKLGFDRQVLPYATMLSVAG------SLPDVHIGKQIHAQLVLLGL 368

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-- 240
            ++D+L  AL+D Y K G    A+  F    EK+ I  T++I+G++  G  E+A ++F  
Sbjct: 369 ASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSD 428

Query: 241 --RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
             R  +  D   ++++I+  S S+       ++H  LI++ +   V  GS LVDMYAKCG
Sbjct: 429 MRRAGLRPDRATFSSIIKASS-SLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCG 487

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            +D+A R FD M ++N  +W ++I  Y   G    A+++F  M  C   P+ VTFL  L+
Sbjct: 488 CLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLA 547

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC H GL D+  + F  M+  YS+ P  EHYAC++D LGR G   Q  K ++EMP K + 
Sbjct: 548 ACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADP 607

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            +W ++L SCR+H + E+A +AA+++F +   D    YV LSN  A AG+W+    +++ 
Sbjct: 608 IIWTSILHSCRIHGNQELARVAADKLFGMEPTD-ATPYVILSNIYARAGQWEDAACVKKI 666

Query: 479 MKLRGVLKDTGCSWV 493
           M+ RGV K++G SWV
Sbjct: 667 MRDRGVRKESGYSWV 681



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 177/365 (48%), Gaps = 12/365 (3%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +H    K G+  +  +   LL  + K G L  A ++F E+  +    YN M+ G  K G 
Sbjct: 157 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL 216

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
             ++L L   +  +G     +TFS IL  +      +     LG  VHA +L+     + 
Sbjct: 217 HTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLL-----LGHQVHALVLRSTSVLNV 271

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT--- 243
            +  +L+D Y K       R +FD M E++ +    +I+ +           +FR+    
Sbjct: 272 FVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKL 331

Query: 244 -VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
             ++ ++ Y  M+   + S+       ++H QL+      +  LG+AL+DMY+KCG +D 
Sbjct: 332 GFDRQVLPYATMLS-VAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDA 390

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           A+  F +  +K+  +WT++I GY +NG   +AL+LF  M+   ++P+  TF   + A   
Sbjct: 391 AKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSS 450

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
             ++  GR++   + R    K  +   + +VD+  + G L++AL+   EMPE+ NS  W 
Sbjct: 451 LAMIGLGRQLHSYLIRS-GYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPER-NSISWN 508

Query: 423 ALLSS 427
           A++S+
Sbjct: 509 AVISA 513



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 138/303 (45%), Gaps = 21/303 (6%)

Query: 78  PNTNISIKLLIL--HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVR 135
           P+ NI    LIL  +   G L  A  +F   P R  + +  M+  +   G+  ++LSL R
Sbjct: 70  PHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFR 129

Query: 136 KLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDS 195
            ++  G  PD  T + +L    C    VP        +H   +K  +     +   L+D+
Sbjct: 130 AMLGEGVIPDRVTVTTVLNLPGC---TVP-------SLHPFAIKFGLDTHVFVCNTLLDA 179

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVY 251
           Y K G  + AR VF  M +K+ +   +M+ G   +G    A ++F    R  +      +
Sbjct: 180 YCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTF 239

Query: 252 NAMIEGYSISIETARKAL--EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309
           ++++   +++   A   L  +VH  ++++    +V + ++L+D Y+KC  +DD RR+FD 
Sbjct: 240 SSIL---TVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDE 296

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKG 369
           M +++  ++  +I  Y  N      L LF  MQ+       + +   LS  G    V  G
Sbjct: 297 MPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIG 356

Query: 370 REI 372
           ++I
Sbjct: 357 KQI 359



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 108/254 (42%), Gaps = 34/254 (13%)

Query: 195 SYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAM 254
           S +  G    AR +FD M  KN+     ++S + S G +  A+ +F  +  ++   +  M
Sbjct: 52  SLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIM 111

Query: 255 IEGYSISIETARKALEVHCQLIKNVFFED----------------------VKLG----- 287
           +  ++ +  T+  AL +   ++      D                      +K G     
Sbjct: 112 MRAHAAAGRTS-DALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHV 170

Query: 288 ---SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
              + L+D Y K G +  ARRVF  M  K+  T+ +M+ G  K G   QAL+LF  M+  
Sbjct: 171 FVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRA 230

Query: 345 CVQPNYVTFLGALS-ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE 403
            +   + TF   L+ A G A L+  G ++   + R  S+     + + ++D   +   L+
Sbjct: 231 GIPATHFTFSSILTVAAGMAHLL-LGHQVHALVLRSTSVLNVFVNNS-LLDFYSKCDCLD 288

Query: 404 QALKFVLEMPEKPN 417
              +   EMPE+ N
Sbjct: 289 DMRRLFDEMPERDN 302


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 149/451 (33%), Positives = 252/451 (55%), Gaps = 11/451 (2%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           + PS L+   +    + G +IH H+ KTG + N  +   L+ ++ K G L  A ++   L
Sbjct: 465 TYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALALRILRRL 524

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P+  + ++  MIAGY+++    E+L L  ++   G + D   F+  + A    R+     
Sbjct: 525 PEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRA----- 579

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
              G+ +HAQ       AD  +  AL+  Y + G+   A + F+ + +KN I   S++SG
Sbjct: 580 LRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSG 639

Query: 227 FMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
               G+ E+A ++F    R   E ++  Y + I   + S+   ++  ++H  ++K  +  
Sbjct: 640 LAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAIS-AAASLANIKQGQQIHSMVLKTGYDS 698

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           + ++ ++L+ +YAK G I DA R F+ M ++NV +W +MI GY ++G   +AL LF  M+
Sbjct: 699 EREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMK 758

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
            C + PN+VTF+G LSAC H GLV +G + FESM + + + PK EHY C+VDLLGRAG L
Sbjct: 759 VCGIMPNHVTFVGVLSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQL 818

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
           ++A++++ EMP   ++ +W  LLS+C +H ++E+   AA+ + +L   D    YV +SN 
Sbjct: 819 DRAMEYIKEMPIPADAMIWRTLLSACVIHKNIEIGERAAHHLLELEPED-SATYVLISNI 877

Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            A + +W      R+ MK  GV K+ G SW+
Sbjct: 878 YAVSRQWIHRDWSRKLMKDXGVKKEPGRSWI 908



 Score =  145 bits (365), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 110/434 (25%), Positives = 206/434 (47%), Gaps = 22/434 (5%)

Query: 3   NLSRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYI------ 56
           N+ R+     +++H+   T +   Q    ++Q    L N +    + S  Q+Y+      
Sbjct: 13  NVVRVSGVGATNSHSFDQTTLHMEQGKSKRIQ----LMNFMEERGVRSNYQNYLWLLEGC 68

Query: 57  -NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYN 115
             S + F  +++H  I+K+G      +   L+  + + G    A ++FDE   R++ ++N
Sbjct: 69  LTSGSLFETMRLHCRISKSGFDGEPLLIDSLVDNYFRHGDQHGAVKVFDENSNRSVFSWN 128

Query: 116 YMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA 175
            MI  ++      +   L R++++ G  P+GYTF+ +LKA  C   ++    N  + VH+
Sbjct: 129 KMIHVFVAQKSNFQVFCLFRRMLAEGITPNGYTFAGVLKA--CVGGDIAF--NYVKQVHS 184

Query: 176 QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
           +       +  ++   L+D Y K G    A+ VF+ +  K+++   +MISG    G  E+
Sbjct: 185 RTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEE 244

Query: 236 AEEIFRKTVEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALV 291
           A  +F      +I     V ++++   S  I+      ++HC +IK  F  +  + + LV
Sbjct: 245 AILLFCDMHASEIFPTPYVLSSVLSA-STKIQLFELGEQLHCLVIKWGFHSETYVCNGLV 303

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
            +Y++  K+  A R+F  M  ++  ++ S+I G  + G  ++ALELF  MQ  C++P+ +
Sbjct: 304 ALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCI 363

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
           T    LSAC   G + KG ++  S      M   +     ++DL  +   +E A KF L 
Sbjct: 364 TVASLLSACASVGALHKGMQL-HSHAIKAGMSADIILEGSLLDLYSKCADVETAHKFFL- 421

Query: 412 MPEKPNSDVWAALL 425
             E  N  +W  +L
Sbjct: 422 XTETENIVLWNVML 435



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/395 (25%), Positives = 187/395 (47%), Gaps = 21/395 (5%)

Query: 47  SLPSALQHYINSDTPF-YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
           +    L+  +  D  F Y  ++H+     G   +  ++  L+ L+ K G ++ A ++F+ 
Sbjct: 161 TFAGVLKACVGGDIAFNYVKQVHSRTFYYGFDSSPLVANLLIDLYSKNGYIESAKKVFNC 220

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           +  + +  +  MI+G  +NG  EE++ L   + +S   P  Y  S +L AST     + L
Sbjct: 221 ICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSAST----KIQL 276

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
              LG  +H  ++K    ++  +   LV  Y +  K   A  +F  M  ++ +   S+IS
Sbjct: 277 FE-LGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLIS 335

Query: 226 GFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFF 281
           G + QGF + A E+F    R  ++ D +   +++   + S+    K +++H   IK    
Sbjct: 336 GLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACA-SVGALHKGMQLHSHAIKAGMS 394

Query: 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM 341
            D+ L  +L+D+Y+KC  ++ A + F   + +N+  W  M+  YG+  N + + E+F  M
Sbjct: 395 ADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQM 454

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC--MVDLLGRA 399
           Q   + PN  T+   L  C   G +  G +I   + +      ++  Y C  ++D+  + 
Sbjct: 455 QMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIK---TGFQLNVYVCSVLIDMYAKY 511

Query: 400 GSLEQALKFVLEMPEKPNSDV--WAALLSSCRLHD 432
           G L  AL+ +  +PE    DV  W A+++    HD
Sbjct: 512 GQLALALRILRRLPE---DDVVSWTAMIAGYVQHD 543


>gi|356510758|ref|XP_003524101.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial-like [Glycine max]
          Length = 854

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 179/523 (34%), Positives = 281/523 (53%), Gaps = 58/523 (11%)

Query: 2   PNLSRIRS-SVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINS-- 58
           P  SR  S SV SS  + HY  VPP           +SL N      LPSA+ H ++S  
Sbjct: 230 PTSSRCCSYSVNSSLVSPHY--VPPET---------ESLLNHCYRRDLPSAM-HVLDSME 277

Query: 59  ------DTPFY---------------GLKIHAHITKTGVKPNTNISIKLLILHLKCGALK 97
                 D+  Y               G ++H HI   G  P T ++  L+ +++K   L+
Sbjct: 278 RRGVWADSITYSELIKCCLAHGAVREGKRVHRHIFSNGYHPKTFLTNILINMYVKFNLLE 337

Query: 98  YAGQMFDELPQRTLSAYNYMIAGYLKNGQV-EESLSLVRKLVSSGERPDGYTFSMILKAS 156
            A  +FD++P+R + ++  MI+ Y  N Q+ + ++ L+  +   G  P+ +TFS +L+A 
Sbjct: 338 EAQVLFDKMPERNVVSWTTMISAY-SNAQLNDRAMRLLAFMFRDGVMPNMFTFSSVLRA- 395

Query: 157 TCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216
             C     L     + +H+ I+K  +++D  + +AL+D Y K G+   A  VF  M+  +
Sbjct: 396 --CERLYDL-----KQLHSWIMKVGLESDVFVRSALIDVYSKMGELLEALKVFREMMTGD 448

Query: 217 VICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEG-YSISI-ETARKALE 270
            +   S+I+ F      ++A  ++    R     D     +++    S+S+ E  R+A  
Sbjct: 449 SVVWNSIIAAFAQHSDGDEALHLYKSMRRVGFPADQSTLTSVLRACTSLSLLELGRQA-- 506

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
            H  ++K  F +D+ L +AL+DMY KCG ++DA+ +F+ M +K+V +W++MI G  +NG 
Sbjct: 507 -HVHVLK--FDQDLILNNALLDMYCKCGSLEDAKFIFNRMAKKDVISWSTMIAGLAQNGF 563

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
             +AL LF  M+    +PN++T LG L AC HAGLV++G   F SM   Y + P  EHY 
Sbjct: 564 SMEALNLFESMKVQGPKPNHITILGVLFACSHAGLVNEGWYYFRSMNNLYGIDPGREHYG 623

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
           CM+DLLGRA  L+  +K + EM  +P+   W  LL +CR   +V++A  AA EI KL+  
Sbjct: 624 CMLDLLGRAEKLDDMVKLIHEMNCEPDVVTWRTLLDACRARQNVDLATYAAKEILKLDPQ 683

Query: 451 DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           D  GAYV LSN  A + +W+ V E+R  MK RG+ K+ GCSW+
Sbjct: 684 D-TGAYVLLSNIYAISKRWNDVAEVRRTMKKRGIRKEPGCSWI 725


>gi|357468161|ref|XP_003604365.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355505420|gb|AES86562.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 874

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 164/484 (33%), Positives = 262/484 (54%), Gaps = 46/484 (9%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHL--KCGALKYAGQMFD 104
           + P  L+ +       YG  +  H    G   ++N+ ++   +HL   CG + YA ++FD
Sbjct: 137 TFPFLLKGFTKDMALKYGKVLLNHAVIHGF-LDSNLFVQKGFIHLFSLCGLVNYARKIFD 195

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE--RPDGYTFSMILKASTCCRSN 162
                 +  +N +++GY +  + EES  L  ++    E   P+  T  ++L A +  +  
Sbjct: 196 MGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEMEKKCECVSPNSVTLVLMLSACSKLKDL 255

Query: 163 VPLPRNLGRMVHAQILKCD-VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
           V      G+ ++ + +K   V+ + +L  AL+D +   G+   AR VFD M  ++VI  T
Sbjct: 256 VG-----GKCIYNKYIKEGIVEPNLILENALIDMFASCGEMDAARGVFDEMKTRDVISWT 310

Query: 222 SMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY----------------------- 258
           S+++GF +   ++ A + F +  E+D V + AMI+GY                       
Sbjct: 311 SIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYLRMNRFKEVLTLFRDMQMSNVKP 370

Query: 259 ----SISIETA---RKALEV----HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVF 307
                +SI TA     ALE+       + KN    D  +G+AL+DMY KCG ++ A+++F
Sbjct: 371 DEFTMVSILTACAHLGALELGEWAKTYIDKNKIKNDTFIGNALIDMYFKCGNVEKAKKIF 430

Query: 308 DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367
           + MQ+K+ FTWT+MI G   NG+  +AL +F  M E  V P+ +T++G + AC H GLV 
Sbjct: 431 NEMQKKDKFTWTAMIVGLANNGHGEEALTMFSYMLEASVTPDEITYIGVMCACTHVGLVA 490

Query: 368 KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
           KG+  F +M   + +KP + HY CMVDLLGRAG L++AL+ ++ MP KPNS VW +LL +
Sbjct: 491 KGKHFFSNMAVQHGIKPNLTHYGCMVDLLGRAGHLKEALEVIMNMPVKPNSIVWGSLLGA 550

Query: 428 CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487
           CR+H +V++A +AANEI +L   +    YV L N  AA  KW ++  +R+ M  RG+ K 
Sbjct: 551 CRVHKNVQLAEMAANEILELEP-ENGAVYVLLCNIYAACKKWKNLHNVRKMMMERGIKKI 609

Query: 488 TGCS 491
            GCS
Sbjct: 610 PGCS 613



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/401 (26%), Positives = 194/401 (48%), Gaps = 49/401 (12%)

Query: 66  KIHAHITKTGVKPNTNISIKLLIL--HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           +IH+   KTG+  N     K++I     + G + YA ++FDE+PQ ++  +N MI GY +
Sbjct: 53  QIHSQTIKTGLSSNHLFLTKVIIFCCTKESGDVYYARKVFDEIPQPSVFIWNTMIKGYSR 112

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
               E  +SL + ++    +PDG+TF  +LK  T    ++ L      + HA ++   + 
Sbjct: 113 INCSESGVSLYKLMLVHNIKPDGFTFPFLLKGFT---KDMALKYGKVLLNHA-VIHGFLD 168

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           ++  +    +  +   G  +YAR +FDM     V+    ++SG+      E+++ +F + 
Sbjct: 169 SNLFVQKGFIHLFSLCGLVNYARKIFDMGDGWEVVTWNVVLSGYNRFKRYEESKRLFIEM 228

Query: 244 VEK-DIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFE-DVKLGSALVDMYAKC 297
            +K + V  N++     +S  +  K L     ++ + IK    E ++ L +AL+DM+A C
Sbjct: 229 EKKCECVSPNSVTLVLMLSACSKLKDLVGGKCIYNKYIKEGIVEPNLILENALIDMFASC 288

Query: 298 GKIDDARRVFDHMQQKNVFTWTS-------------------------------MIDGYG 326
           G++D AR VFD M+ ++V +WTS                               MIDGY 
Sbjct: 289 GEMDAARGVFDEMKTRDVISWTSIVTGFANTCRIDLARKYFDQMPERDYVSWTAMIDGYL 348

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM 386
           +     + L LF  MQ   V+P+  T +  L+AC H G ++ G      ++++   K K 
Sbjct: 349 RMNRFKEVLTLFRDMQMSNVKPDEFTMVSILTACAHLGALELGEWAKTYIDKN---KIKN 405

Query: 387 EHYA--CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
           + +    ++D+  + G++E+A K   EM +K +   W A++
Sbjct: 406 DTFIGNALIDMYFKCGNVEKAKKIFNEM-QKKDKFTWTAMI 445


>gi|345505210|gb|AEN99829.1| chlororespiratory reduction 4, partial [Barbarea verna]
          Length = 588

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 153/473 (32%), Positives = 245/473 (51%), Gaps = 62/473 (13%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH  + KTG+  +  +   L+ L+LKCG L +A Q+FD +PQR   +YN MI GY+K
Sbjct: 115 GMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVK 174

Query: 124 NGQVEESLSL-------VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
            G +  +  L       ++ L+S      GY       A T    N+           A 
Sbjct: 175 CGLIGSARELFDLMPKEMKNLISWNSMISGY-------AQTSDGVNI-----------AS 216

Query: 177 ILKCDVKADDVL-YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
            L  ++   D++ + +L+D YVK G+   A+ +F +M  ++V+   +MI G+   GFV  
Sbjct: 217 KLFAEMPEKDLISWNSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHK 276

Query: 236 AEEIFRKTVEKDIVVYNAMIEGY---------------------------------SISI 262
           A+ +F +   +D+V YN+M+ GY                                 S   
Sbjct: 277 AKTLFDQMPHRDVVAYNSMMAGYVQNKYNMEALEIFSDMEKESHLSPDETTLVIVLSAIA 336

Query: 263 ETAR--KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
           +  R  KA+++H  +++  FF   KLG AL+DMY+KCG I  A  VF+ ++ K++  W +
Sbjct: 337 QLGRLSKAMDMHLYIVEKQFFLGGKLGVALIDMYSKCGSIQQAMLVFERIENKSIDHWNA 396

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
           MI G   +G    A ++   ++   ++P+ +TF+G L+AC H+GLV +G   FE M R +
Sbjct: 397 MIGGLAIHGLGESAFDMLLEIERRSIKPDDITFVGILNACSHSGLVKEGLLCFELMRRKH 456

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIA 440
            ++P+++HY CMVD+L R+GS+E A   + EMP +PN  +W   L++C  H + E   + 
Sbjct: 457 KIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPMEPNDVIWRTFLTACSHHKEFETGEVV 516

Query: 441 ANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           A  +  L A   P +YV LSN  A+ G W     +R  MK R + K  GCSW+
Sbjct: 517 AKHLI-LQAGYNPSSYVLLSNMYASFGMWKDARRVRTMMKERELQKVPGCSWI 568



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 111/473 (23%), Positives = 209/473 (44%), Gaps = 60/473 (12%)

Query: 67  IHAHITKTGVKPNTNISIKLLIL-----------HLKCGALKYAGQMFDELPQRTLSAYN 115
           I A + KTG   N+N++ ++++              +C    Y    F          +N
Sbjct: 6   IXARLIKTGFIXNSNLTTRIVLAFAASRRPYLAEFARCVFQNYHSCSFAHGEVEDPFLWN 65

Query: 116 YMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA 175
            +I  +      + +L     ++ +G   D ++ S++LKA  C R         G  +H 
Sbjct: 66  AVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKA--CSRLGFV---QEGMQIHG 120

Query: 176 QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
            + K  + +D  L   L+  Y+K G   +AR +FD M +++ +   SMI G++  G +  
Sbjct: 121 FLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIGS 180

Query: 236 AEEIFRKTVE--KDIVVYNAMIEGYSISIETARKALEVHCQL------------------ 275
           A E+F    +  K+++ +N+MI GY+ + +    A ++  ++                  
Sbjct: 181 ARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVKH 240

Query: 276 -----IKNVFF----EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
                 K++F+     DV   + ++D YAK G +  A+ +FD M  ++V  + SM+ GY 
Sbjct: 241 GRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGYV 300

Query: 327 KNGNPNQALELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREI-FESMERDYSMKP 384
           +N    +ALE+F  M +E  + P+  T +  LSA    G + K  ++    +E+ + +  
Sbjct: 301 QNKYNMEALEIFSDMEKESHLSPDETTLVIVLSAIAQLGRLSKAMDMHLYIVEKQFFLGG 360

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
           K+     ++D+  + GS++QA+  V E  E  + D W A++    +H   E A     EI
Sbjct: 361 KLG--VALIDMYSKCGSIQQAM-LVFERIENKSIDHWNAMIGGLAIHGLGESAFDMLLEI 417

Query: 445 FKLNANDRPGAYVALSNTLAAAGKWDSVTE-------LREKMKLRGVLKDTGC 490
            + +       +V + N  + +G    V E       +R K K+   L+  GC
Sbjct: 418 ERRSIKPDDITFVGILNACSHSGL---VKEGLLCFELMRRKHKIEPRLQHYGC 467


>gi|255559100|ref|XP_002520572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540232|gb|EEF41805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 143/439 (32%), Positives = 259/439 (58%), Gaps = 13/439 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA   K     +  +   +L+++ +C +++ + ++F+++P++ + ++N MI+G+++
Sbjct: 223 GQQMHAFTMKNHTVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGFIQ 282

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  EE L LV ++   G   D  T + +L A++  R+     R +G+  HA +++  +K
Sbjct: 283 NGLDEEGLMLVYEMQKQGFIADSVTVTSLLSAASNLRN-----REIGKQTHAYLIRHGIK 337

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDM--MLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
            D  + + L+D Y K G    ++ VF+   +  ++     ++I+G+   G VE A   FR
Sbjct: 338 FDG-MDSYLIDMYAKSGLIRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVEQAFITFR 396

Query: 242 KTVEKDI---VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
             +E+++    V  A I     S+ +     ++H   I+    +++ + +ALVDMY+K G
Sbjct: 397 LMLEQNLRPNAVTLASILPACSSLGSINLGKQLHGVSIRYSLDQNIFVRTALVDMYSKSG 456

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            I+ A  VF    ++N  T+T+MI GYG++G    AL LF  M++  +QP+ +TF+  LS
Sbjct: 457 AINYAESVFTQSSERNSVTYTTMILGYGQHGMGENALSLFHSMKKSGIQPDAITFVAVLS 516

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC +AGLVD+G  IFESM+RD+ ++P   HY C+ D+LGR G + +A +FV ++ E+ + 
Sbjct: 517 ACSYAGLVDEGLRIFESMKRDFKIQPSTAHYCCVADMLGRVGRVIEAYEFVKQLGEEGHV 576

Query: 419 -DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY-VALSNTLAAAGKWDSVTELR 476
            ++W +LL +CRLH  +E+    +N + ++N+ DR   Y V LSN  A    W++V +LR
Sbjct: 577 IEIWGSLLGACRLHGHIELGEEVSNRLLEMNSVDRLAGYQVLLSNMYAEEANWETVDKLR 636

Query: 477 EKMKLRGVLKDTGCSWVGT 495
           + M+ +G+ K+ GCSW+ T
Sbjct: 637 KSMREKGLRKEVGCSWIDT 655



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 99/399 (24%), Positives = 184/399 (46%), Gaps = 16/399 (4%)

Query: 89  LHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL-VRKLVSSGERPDGY 147
           ++ + G L    ++FD   +++   +N MI G+++N    E + L ++ + +     D  
Sbjct: 146 MYAELGCLDLCRKVFDSCLEKSAEVWNTMIGGHIQNNSFLEGVYLFLQAMKTEHTILDDV 205

Query: 148 TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARI 207
           TF   L A +  +        LG+ +HA  +K        +  A++  Y +      +  
Sbjct: 206 TFLSALTAVSQLQC-----LGLGQQMHAFTMKNHTVLSVTVLNAILVMYSRCNSVQTSFE 260

Query: 208 VFDMMLEKNVICSTSMISGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSISIE 263
           VF+ M EK+V+   +MISGF+  G  E+      E+ ++    D V   +++   S ++ 
Sbjct: 261 VFEKMPEKDVVSWNTMISGFIQNGLDEEGLMLVYEMQKQGFIADSVTVTSLLSAAS-NLR 319

Query: 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFD--HMQQKNVFTWTSM 321
                 + H  LI++    D  + S L+DMYAK G I  ++RVF+  ++Q ++  TW ++
Sbjct: 320 NREIGKQTHAYLIRHGIKFD-GMDSYLIDMYAKSGLIRISQRVFENNNIQNRDQATWNAV 378

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           I GY +NG   QA   F +M E  ++PN VT    L AC   G ++ G+++   +   YS
Sbjct: 379 IAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLASILPACSSLGSINLGKQL-HGVSIRYS 437

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441
           +   +     +VD+  ++G++  A     +  E+ NS  +  ++     H   E A    
Sbjct: 438 LDQNIFVRTALVDMYSKSGAINYAESVFTQSSER-NSVTYTTMILGYGQHGMGENALSLF 496

Query: 442 NEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           + + K         +VA+ +  + AG  D    + E MK
Sbjct: 497 HSMKKSGIQPDAITFVAVLSACSYAGLVDEGLRIFESMK 535



 Score = 85.5 bits (210), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 87/380 (22%), Positives = 175/380 (46%), Gaps = 19/380 (5%)

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           ++F  + +R + A+N M++ Y+K  +  E++   R ++  G +P   +F  +  A     
Sbjct: 55  KVFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVNVFPAI---- 110

Query: 161 SNVPLPRNLGRMVHAQILKC--DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI 218
           S+V   +N   +++  +LK   +   D  + ++ +  Y + G     R VFD  LEK+  
Sbjct: 111 SSVGDFKN-ANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDLCRKVFDSCLEKSAE 169

Query: 219 CSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL----EVHCQ 274
              +MI G +      +   +F + ++ +  + + +    +++  +  + L    ++H  
Sbjct: 170 VWNTMIGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAF 229

Query: 275 LIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQA 334
            +KN     V + +A++ MY++C  +  +  VF+ M +K+V +W +MI G+ +NG   + 
Sbjct: 230 TMKNHTVLSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEG 289

Query: 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394
           L L   MQ+     + VT    LSA  +    + G++    + R       M+ Y  ++D
Sbjct: 290 LMLVYEMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYLIRHGIKFDGMDSY--LID 347

Query: 395 LLGRAGSLEQALKFVLEMPEKPNSD--VWAALLSSCRLHDDVEMANIAANEIFKLNANDR 452
           +  ++G +  + + V E     N D   W A+++    +  VE A I       L  N R
Sbjct: 348 MYAKSGLIRISQR-VFENNNIQNRDQATWNAVIAGYTQNGLVEQAFITFR--LMLEQNLR 404

Query: 453 PGAYVALSNTLAAAGKWDSV 472
           P A V L++ L A     S+
Sbjct: 405 PNA-VTLASILPACSSLGSI 423


>gi|224055823|ref|XP_002298671.1| predicted protein [Populus trichocarpa]
 gi|222845929|gb|EEE83476.1| predicted protein [Populus trichocarpa]
          Length = 609

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 163/475 (34%), Positives = 257/475 (54%), Gaps = 44/475 (9%)

Query: 61  PFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120
           P    KIHA I K+G+     +   LL  + KC  L+ A  +FDE+PQR   ++  ++  
Sbjct: 18  PLNAKKIHAQIVKSGLNQCQPLPNTLLDAYGKCNLLQDAHYLFDEMPQRDHVSWASILTA 77

Query: 121 YLKNGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           Y +     ++LS+   + ++   +PD + ++ +LKA   C S   L   LG+ VHA+ + 
Sbjct: 78  YNQAKLPNKTLSIFHYMFTTDRLQPDHFVYATLLKA---CASLCSL--RLGKQVHARFVL 132

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
                DDV+ ++LVD Y K G  S AR VFD +L K  +  T+M+SG+   G  ++A E+
Sbjct: 133 SPFVDDDVVKSSLVDMYAKCGLPSIARSVFDSILVKTSVSWTAMLSGYARSGLKDEAMEL 192

Query: 240 FRKTVEKDIVVYNAMIEG-----YSIS-----IETARKAL-------------------- 269
           F +T  +++  + A+I G     Y I      IE  R+ +                    
Sbjct: 193 FLRTPVRNLYSWTALISGLVQSGYCIDGCYMFIEMRREGVDIVDPLVLSSVVGACANLAV 252

Query: 270 -----EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
                ++H  +I + +   + + +ALVDMYAKC  I  AR VF+ M  ++V +WTS+I G
Sbjct: 253 LGLGKQIHGLVIGSGYESCLFISNALVDMYAKCSDILAARNVFNRMLHRDVVSWTSIIVG 312

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP 384
             ++G   +AL+L+  M    ++PN VTF+G + AC HAGLV KGR++F++M  DY + P
Sbjct: 313 AAQHGRAKEALDLYDQMVLAEIKPNEVTFVGLIYACSHAGLVSKGRKLFKAMIEDYRISP 372

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
            ++ + C +DLL R+G L +A   +  MP KP+   WAALLS+C+ H + EM    A+ +
Sbjct: 373 SLQLFTCFLDLLSRSGHLNEAEDLIKTMPHKPDEPTWAALLSACKHHGNTEMGVRIADRL 432

Query: 445 FKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV--GTES 497
             LN ++ P  YV LSN  A AGKW+ ++ +R+ M    V +  G S +  G ES
Sbjct: 433 LSLNMHE-PSTYVLLSNVYAGAGKWEQMSRVRKLMTDMEVKRKPGYSSIDLGKES 486


>gi|225427963|ref|XP_002277549.1| PREDICTED: pentatricopeptide repeat-containing protein At2g21090
           [Vitis vinifera]
          Length = 612

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 169/533 (31%), Positives = 271/533 (50%), Gaps = 75/533 (14%)

Query: 33  LQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVK-PNTNISIKLLILHL 91
           L+N       L + +L S LQH  +S     G ++H H+  TG+K P T +S  L+ ++ 
Sbjct: 47  LENLARRGLRLDSRTLASLLQHCADSRALREGKRVHLHLKLTGLKRPGTFLSNHLINMYA 106

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV------------------------ 127
           KCG    A ++FD++  R L ++N M++GY K G +                        
Sbjct: 107 KCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPARKLFDKMPEKDVVSWNTMVIA 166

Query: 128 -------EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR-NLGRMVHAQILK 179
                  +E+L    +    G + +G++F+ +L   T C   V L    L R VH QIL 
Sbjct: 167 HAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVL---TVC---VKLKEVGLTRQVHGQILV 220

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
               ++ VL ++++D+YVK G    AR +FD M  ++V+  T+M+SG+   G ++ A E+
Sbjct: 221 AGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMVSGYAKWGDMKSANEL 280

Query: 240 FRKTVEKDIVVYNAMIEGYS----------------------------------ISIETA 265
           F +  EK+ V + A+I GY+                                   SI + 
Sbjct: 281 FVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQFTFSSCLCACASIASL 340

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMIDG 324
           +   ++H  L++  F  +  + SAL+DMY+KCG +   R+VFD M  K +V  W ++I  
Sbjct: 341 KHGKQIHAYLLRINFQPNTIVVSALIDMYSKCGSLGIGRKVFDLMGNKLDVVLWNTIISA 400

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP 384
             ++G   +A+++   M     +P+ +TF+  L+AC H+GLV +G   FESM  DY + P
Sbjct: 401 LAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSGLVQQGLNFFESMSCDYGIVP 460

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
             EHYAC++DLLGRAG  E+ +  + +MP KP+  VW ALL  CR+H  +E+   AA  +
Sbjct: 461 SQEHYACLIDLLGRAGCFEEVMDQLEKMPYKPDDRVWNALLGVCRIHGHIELGRKAAERL 520

Query: 445 FKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTES 497
            +L       AYV LS+  A  G+W+SV ++R+ M  R V K+   SW+  E+
Sbjct: 521 IELEPQSST-AYVLLSSIYAVLGRWESVQKVRQLMNERQVKKERAISWLEIEN 572



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/416 (25%), Positives = 176/416 (42%), Gaps = 72/416 (17%)

Query: 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQI 177
           I    K  ++ E++S +  L   G R D  T + +L+    C  +  L    G+ VH  +
Sbjct: 31  IVKLCKKNKLNEAVSSLENLARRGLRLDSRTLASLLQH---CADSRALRE--GKRVHLHL 85

Query: 178 LKCDVK-ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
               +K     L   L++ Y K GK   AR VFD M  +N+    +M+SG+   G ++ A
Sbjct: 86  KLTGLKRPGTFLSNHLINMYAKCGKEVEARKVFDKMSARNLYSWNNMLSGYAKLGMIKPA 145

Query: 237 EEIFRKTVEKDIVVYNAMI--------------------------EGYS--------ISI 262
            ++F K  EKD+V +N M+                           G+S        + +
Sbjct: 146 RKLFDKMPEKDVVSWNTMVIAHAQCGYWDEALRFYSEFRQLGIQCNGFSFAGVLTVCVKL 205

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
           +      +VH Q++   F  +V L S+++D Y KCG + DAR++FD M  ++V  WT+M+
Sbjct: 206 KEVGLTRQVHGQILVAGFLSNVVLSSSVLDAYVKCGLMGDARKLFDEMSARDVLAWTTMV 265

Query: 323 DGYGK-------------------------------NGNPNQALELFCMMQECCVQPNYV 351
            GY K                               NG  ++ALELF  M    V+P+  
Sbjct: 266 SGYAKWGDMKSANELFVEMPEKNPVSWTALISGYARNGMGHKALELFTKMMLFHVRPDQF 325

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
           TF   L AC     +  G++I   + R  + +P     + ++D+  + GSL    K    
Sbjct: 326 TFSSCLCACASIASLKHGKQIHAYLLR-INFQPNTIVVSALIDMYSKCGSLGIGRKVFDL 384

Query: 412 MPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG 467
           M  K +  +W  ++S+   H   E A    +++ +  A      +V + N  + +G
Sbjct: 385 MGNKLDVVLWNTIISALAQHGCGEEAIQMLDDMVRSGAKPDKITFVVILNACSHSG 440


>gi|356536005|ref|XP_003536531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Glycine max]
          Length = 686

 Score =  269 bits (687), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 162/501 (32%), Positives = 265/501 (52%), Gaps = 37/501 (7%)

Query: 6   RIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGL 65
           R  S++   ++ R   ++P + TFP   +   SL  P+T   L +      N    F G 
Sbjct: 89  RFTSALLHFSNMRRECVLPNDFTFPCVFKASASLHMPVTGKQLHALALKGGNILDVFVGC 148

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
                 +KTG++P                    A  MFDE+P R L+ +N  ++  +++G
Sbjct: 149 SAFDMYSKTGLRPE-------------------ARNMFDEMPHRNLATWNAYMSNAVQDG 189

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           +  ++++  +K +     P+  TF   L A   C   V L   LGR +H  I++   + D
Sbjct: 190 RCLDAIAAFKKFLCVDGEPNAITFCAFLNA---CADIVSL--ELGRQLHGFIVRSRYRED 244

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMML--EKNVICSTSMISGFMSQGFVEDAEEIF--- 240
             ++  L+D Y K G    + +VF  +    +NV+   S+++  +     E A  +F   
Sbjct: 245 VSVFNGLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEERACMVFLQA 304

Query: 241 RKTVEKDIVVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
           RK VE    + ++++   +    +E  R    VH   +K    E++ +GSALVD+Y KCG
Sbjct: 305 RKEVEPTDFMISSVLSACAELGGLELGRS---VHALALKACVEENIFVGSALVDLYGKCG 361

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE--CCVQPNYVTFLGA 356
            I+ A +VF  M ++N+ TW +MI GY   G+ + AL LF  M    C +  +YVT +  
Sbjct: 362 SIEYAEQVFREMPERNLVTWNAMIGGYAHLGDVDMALSLFQEMTSGSCGIALSYVTLVSV 421

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           LSAC  AG V++G +IFESM   Y ++P  EHYAC+VDLLGR+G +++A +F+  MP  P
Sbjct: 422 LSACSRAGAVERGLQIFESMRGRYGIEPGAEHYACVVDLLGRSGLVDRAYEFIKRMPILP 481

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
              VW ALL +C++H   ++  IAA ++F+L+ +D  G +V  SN LA+AG+W+  T +R
Sbjct: 482 TISVWGALLGACKMHGKTKLGKIAAEKLFELDPDD-SGNHVVFSNMLASAGRWEEATIVR 540

Query: 477 EKMKLRGVLKDTGCSWVGTES 497
           ++M+  G+ K+ G SWV  ++
Sbjct: 541 KEMRDIGIKKNVGYSWVAVKN 561



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 116/456 (25%), Positives = 209/456 (45%), Gaps = 30/456 (6%)

Query: 42  PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQ 101
           P     L S L+  + S +   G  +HAHI +T   P  +     L+       L  + Q
Sbjct: 4   PRPPNLLGSFLESAVLSRSSLLGRAVHAHILRTHDTPLPSFLCNHLVNMYSKLDLPNSAQ 63

Query: 102 MFDELPQ-RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           +   L   RT+  +  +I+G + N +   +L     +      P+ +TF  + KAS    
Sbjct: 64  LVLSLTNPRTVVTWTSLISGCVHNRRFTSALLHFSNMRRECVLPNDFTFPCVFKAS---- 119

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           +++ +P   G+ +HA  LK     D  +  +  D Y K G    AR +FD M  +N+   
Sbjct: 120 ASLHMPVT-GKQLHALALKGGNILDVFVGCSAFDMYSKTGLRPEARNMFDEMPHRNLATW 178

Query: 221 TSMISGFMSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYS--ISIETARKALEVHCQ 274
            + +S  +  G   DA   F+K +    E + + + A +   +  +S+E  R   ++H  
Sbjct: 179 NAYMSNAVQDGRCLDAIAAFKKFLCVDGEPNAITFCAFLNACADIVSLELGR---QLHGF 235

Query: 275 LIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM--QQKNVFTWTSMIDGYGKNGNPN 332
           ++++ + EDV + + L+D Y KCG I  +  VF  +   ++NV +W S++    +N    
Sbjct: 236 IVRSRYREDVSVFNGLIDFYGKCGDIVSSELVFSRIGSGRRNVVSWCSLLAALVQNHEEE 295

Query: 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACM 392
           +A  +F   ++  V+P        LSAC   G ++ GR +  ++     ++  +   + +
Sbjct: 296 RACMVFLQARK-EVEPTDFMISSVLSACAELGGLELGRSV-HALALKACVEENIFVGSAL 353

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR 452
           VDL G+ GS+E A +   EMPE+ N   W A++       DV+M    A  +F+   +  
Sbjct: 354 VDLYGKCGSIEYAEQVFREMPER-NLVTWNAMIGGYAHLGDVDM----ALSLFQEMTSGS 408

Query: 453 PG---AYVALSNTLAA---AGKWDSVTELREKMKLR 482
            G   +YV L + L+A   AG  +   ++ E M+ R
Sbjct: 409 CGIALSYVTLVSVLSACSRAGAVERGLQIFESMRGR 444


>gi|356559933|ref|XP_003548250.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Glycine max]
          Length = 512

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 166/465 (35%), Positives = 249/465 (53%), Gaps = 47/465 (10%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IH +  + G+   T I I+ L   L+   L YA ++    P+ TL  YN +I  Y  + 
Sbjct: 6   QIHGYTLRNGID-QTKILIEKL---LEIPNLHYAHKVLHHSPKPTLFLYNKLIQAYSSHP 61

Query: 126 QVE-ESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
           Q + +  SL  +++     P+ +TF+ +  A T   S      +LG+M+H   +K   + 
Sbjct: 62  QHQHQCFSLYSQMLLHSFLPNQHTFNFLFSACTSLSS-----PSLGQMLHTHFIKSGFEP 116

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
           D    TAL+D Y K G    AR +FD M  + V    +M++G    G ++ A E+FR   
Sbjct: 117 DLFAATALLDMYTKVGTLELARKLFDQMPVRGVPTWNAMMAGHARFGDMDVALELFRLMP 176

Query: 245 EKDIVVYNAMIEGYSISIETARK-------------------------------ALE--- 270
            +++V +  MI GYS S +                                   ALE   
Sbjct: 177 SRNVVSWTTMISGYSRSKKYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALEIGQ 236

Query: 271 -VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-KNVFTWTSMIDGYGKN 328
            V     KN FF+++ + +A+++MYAKCGKID A +VF+ +   +N+ +W SMI G   +
Sbjct: 237 RVEAYARKNGFFKNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLRNLCSWNSMIMGLAVH 296

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G   + L+L+  M      P+ VTF+G L AC H G+V+KGR IF+SM   +++ PK+EH
Sbjct: 297 GECCKTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNIIPKLEH 356

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
           Y CMVDLLGRAG L +A + +  MP KP+S +W ALL +C  HD+VE+A IAA  +F L 
Sbjct: 357 YGCMVDLLGRAGQLREAYEVIQRMPMKPDSVIWGALLGACSFHDNVELAEIAAESLFALE 416

Query: 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             + PG YV LSN  A+AG+WD V +LR+ MK   + K  G S++
Sbjct: 417 PWN-PGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSAGHSFI 460



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 97/437 (22%), Positives = 190/437 (43%), Gaps = 44/437 (10%)

Query: 27  QTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKL 86
            +F P    ++ L +  T+ S PS             G  +H H  K+G +P+   +  L
Sbjct: 77  HSFLPNQHTFNFLFSACTSLSSPS------------LGQMLHTHFIKSGFEPDLFAATAL 124

Query: 87  LILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV-----RKLVSSG 141
           L ++ K G L+ A ++FD++P R +  +N M+AG+ + G ++ +L L      R +VS  
Sbjct: 125 LDMYTKVGTLELARKLFDQMPVRGVPTWNAMMAGHARFGDMDVALELFRLMPSRNVVSWT 184

Query: 142 ERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK 201
               GY+ S   K        + + +  G M +A  L     A   L    +   V+   
Sbjct: 185 TMISGYSRSK--KYGEALGLFLRMEQEKGMMPNAVTLASIFPAFANLGALEIGQRVE--- 239

Query: 202 TSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE-KDIVVYNAMIEGYSI 260
            +YAR        KN+  S +++  +   G ++ A ++F +    +++  +N+MI G ++
Sbjct: 240 -AYAR---KNGFFKNLYVSNAVLEMYAKCGKIDVAWKVFNEIGSLRNLCSWNSMIMGLAV 295

Query: 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-NVFT-- 317
             E   K L+++ Q++      D      L+      G ++  R +F  M    N+    
Sbjct: 296 HGECC-KTLKLYDQMLGEGTSPDDVTFVGLLLACTHGGMVEKGRHIFKSMTTSFNIIPKL 354

Query: 318 --WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES 375
             +  M+D  G+ G   +A E+   +Q   ++P+ V +   L AC     V+      ES
Sbjct: 355 EHYGCMVDLLGRAGQLREAYEV---IQRMPMKPDSVIWGALLGACSFHDNVELAEIAAES 411

Query: 376 MERDYSMKP-KMEHYACMVDLLGRAGSLEQALKF--VLEMPEKPNSDVWAALLSSCRLHD 432
           +   ++++P    +Y  + ++   AG  +   K   V++  +   S   + +    +LH 
Sbjct: 412 L---FALEPWNPGNYVILSNIYASAGQWDGVAKLRKVMKGSKITKSAGHSFIEEGGQLHK 468

Query: 433 DV--EMANIAANEIFKL 447
            +  + ++  +NEIF L
Sbjct: 469 FIVEDRSHPESNEIFAL 485


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 148/432 (34%), Positives = 253/432 (58%), Gaps = 11/432 (2%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++H+ + K  ++ +  +S+ L+ ++ KC  L+ A   F+ LP++ L A+N +I+GY +  
Sbjct: 353 QLHSSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYW 412

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           +  E+LSL  ++   G   +  T S ILK++   +       ++ R VH   +K    +D
Sbjct: 413 EDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQV-----VHVCRQVHGLSVKSGFHSD 467

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT-- 243
             +  +L+DSY K      A  +F+     +++  TSMI+ +   G  E+A ++F +   
Sbjct: 468 IYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQD 527

Query: 244 --VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
             ++ D  V ++++   + ++    +  ++H  ++K  F  D+  G++LV+MYAKCG ID
Sbjct: 528 MELKPDRFVCSSLLNACA-NLSAFEQGKQLHVHILKYGFVLDIFAGNSLVNMYAKCGSID 586

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           DA R F  + ++ + +W++MI G  ++G+  QAL+LF  M +  V PN++T +  L AC 
Sbjct: 587 DAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLVSVLGACN 646

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
           HAGLV + +  FESME  +  KP  EHYACM+DLLGRAG + +A++ V +MP + N+ VW
Sbjct: 647 HAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPFEANASVW 706

Query: 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
            ALL + R+H DVE+   AA  +F L   ++ G +V L+N  A+AGKW++V E+R  M+ 
Sbjct: 707 GALLGAARIHKDVELGRRAAEMLFILEP-EKSGTHVLLANIYASAGKWENVAEVRRLMRD 765

Query: 482 RGVLKDTGCSWV 493
             V K+ G SW+
Sbjct: 766 SKVKKEPGMSWI 777



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/283 (28%), Positives = 150/283 (53%), Gaps = 10/283 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           GL+IHAHITK+G+  + +I   L+ L+ KC    YA ++ DE  +  L +++ +I+GY +
Sbjct: 75  GLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQ 134

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG    +L    ++   G + + +TFS +LKA +  +        +G+ VH  ++    +
Sbjct: 135 NGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIVKD-----LRIGKQVHGVVVVSGFE 189

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +   LV  Y K  +   ++ +FD + E+NV+   ++ S ++   F  +A  +F + 
Sbjct: 190 GDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEM 249

Query: 244 VEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           V   I       ++M+   +   +++R  + +H  LIK  +  D    +ALVDMYAK G 
Sbjct: 250 VLSGIKPNEFSLSSMVNACTGLRDSSRGKI-IHGYLIKLGYDWDPFSANALVDMYAKVGD 308

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           + DA  VF+ ++Q ++ +W ++I G   + +  QALEL   M+
Sbjct: 309 LADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMK 351



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/418 (22%), Positives = 197/418 (47%), Gaps = 44/418 (10%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH ++ K G   +   +  L+ ++ K G L  A  +F+++ Q  + ++N +IAG + 
Sbjct: 277 GKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVL 336

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +   E++L L+ ++                                 R +H+ ++K D++
Sbjct: 337 HEHHEQALELLGQM--------------------------------KRQLHSSLMKMDME 364

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI-FRK 242
           +D  +   LVD Y K      AR+ F+++ EK++I   ++ISG+ SQ + ED E +    
Sbjct: 365 SDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGY-SQ-YWEDMEALSLFV 422

Query: 243 TVEKDIVVYN----AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
            + K+ + +N    + I   +  ++      +VH   +K+ F  D+ + ++L+D Y KC 
Sbjct: 423 EMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCS 482

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            ++DA R+F+     ++ ++TSMI  Y + G   +AL+LF  MQ+  ++P+       L+
Sbjct: 483 HVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLN 542

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC +    ++G+++   + + Y     +     +V++  + GS++ A +   E+ E+   
Sbjct: 543 ACANLSAFEQGKQLHVHILK-YGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIV 601

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
             W+A++     H     A    N++ K   +     ++ L + L A      VTE +
Sbjct: 602 S-WSAMIGGLAQHGHGRQALQLFNQMLKEGVSPN---HITLVSVLGACNHAGLVTEAK 655



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 148/301 (49%), Gaps = 18/301 (5%)

Query: 144 PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTS 203
           P   ++S +L  S CC +    P   G  +HA I K  +  D  +   L++ Y K     
Sbjct: 54  PTSVSYSKLL--SQCCTTKSLRP---GLQIHAHITKSGLSDDPSIRNHLINLYSKCRXFG 108

Query: 204 YARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYS 259
           YAR + D   E +++  +++ISG+   G    A   F +     V+ +   ++++++  S
Sbjct: 109 YARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACS 168

Query: 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWT 319
           I ++  R   +VH  ++ + F  DV + + LV MYAKC +  D++R+FD + ++NV +W 
Sbjct: 169 I-VKDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWN 227

Query: 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR-EIFES--M 376
           ++   Y +     +A+ LF  M    ++PN  +    ++AC   GL D  R +I     +
Sbjct: 228 ALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNAC--TGLRDSSRGKIIHGYLI 285

Query: 377 ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEM 436
           +  Y   P   +   +VD+  + G L  A+  V E  ++P+   W A+++ C LH+  E 
Sbjct: 286 KLGYDWDPFSAN--ALVDMYAKVGDLADAIS-VFEKIKQPDIVSWNAVIAGCVLHEHHEQ 342

Query: 437 A 437
           A
Sbjct: 343 A 343


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 165/437 (37%), Positives = 242/437 (55%), Gaps = 20/437 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH+  TKTG   +  +    + L+ KCG +K    +F E  +  + AYN MI GY  
Sbjct: 240 GMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTS 299

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRM--VHAQILKCD 181
           NG+ E SLSL ++L+ SG R         L++ST   S VP+  +L  +  +H   LK +
Sbjct: 300 NGETELSLSLFKELMLSGAR---------LRSSTLV-SLVPVSGHLMLIYAIHGYCLKSN 349

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
             +   + TAL   Y K  +   AR +FD   EK++    +MISG+   G  EDA  +FR
Sbjct: 350 FLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFR 409

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFED-VKLGSALVDMYAK 296
           + ++K     N +     +S      AL     VH  L+++  FE  + + +AL+ MYAK
Sbjct: 410 E-MQKSEFSPNPVTITCILSACAQLGALSLGKWVH-DLVRSTDFESSIYVSTALIGMYAK 467

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG I +ARR+FD M +KN  TW +MI GYG +G   +AL +F  M    + P  VTFL  
Sbjct: 468 CGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCV 527

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           L AC HAGLV +G EIF SM   Y  +P ++HYACMVD+LGRAG L++AL+F+  M  +P
Sbjct: 528 LYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEP 587

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
            S VW  LL +CR+H D  +A   + ++F+L+  D  G +V LSN  +A   +     +R
Sbjct: 588 GSSVWETLLGACRIHKDTNLARTVSEKLFELDP-DNVGYHVLLSNIHSADRNYPQAATVR 646

Query: 477 EKMKLRGVLKDTGCSWV 493
           +  K R + K  G + +
Sbjct: 647 QTAKKRKLAKAPGYTLI 663



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/375 (24%), Positives = 171/375 (45%), Gaps = 20/375 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH      G      +   ++ ++ K   ++ A ++FD +P++    +N MI+GY K
Sbjct: 138 GRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRK 197

Query: 124 NGQVEESLSLVRKLVS-SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           N    ES+ + R L++ S  R D  T   IL A    +        LG  +H+   K   
Sbjct: 198 NEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQE-----LRLGMQIHSLATKTGC 252

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            + D + T  +  Y K GK      +F    + +++   +MI G+ S G  E +  +F++
Sbjct: 253 YSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKE 312

Query: 243 ------TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
                  +    +V    + G+ + I        +H   +K+ F     + +AL  +Y+K
Sbjct: 313 LMLSGARLRSSTLVSLVPVSGHLMLI------YAIHGYCLKSNFLSHASVSTALTTVYSK 366

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
             +I+ AR++FD   +K++ +W +MI GY +NG    A+ LF  MQ+    PN VT    
Sbjct: 367 LNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCI 426

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           LSAC   G +  G+ + + + R    +  +     ++ +  + GS+ +A + + ++  K 
Sbjct: 427 LSACAQLGALSLGKWVHD-LVRSTDFESSIYVSTALIGMYAKCGSIAEARR-LFDLMTKK 484

Query: 417 NSDVWAALLSSCRLH 431
           N   W  ++S   LH
Sbjct: 485 NEVTWNTMISGYGLH 499



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 83/370 (22%), Positives = 158/370 (42%), Gaps = 23/370 (6%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           + HA I   G + + ++  KL       GA+ YA  +F  + +  +  +N ++ G+  N 
Sbjct: 38  QTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNE 97

Query: 126 QVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
               SLS+   L  S + +P+  T++  + A++  R +       GR++H Q +     +
Sbjct: 98  SPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDD-----RAGRVIHGQAVVDGCDS 152

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
           + +L + +V  Y K  +   AR VFD M EK+ I   +MISG+       ++ ++FR  +
Sbjct: 153 ELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLI 212

Query: 245 EKDIVVYNAM----IEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
            +     +      I      ++  R  +++H    K   +    + +  + +Y+KCGKI
Sbjct: 213 NESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKI 272

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
                +F   ++ ++  + +MI GY  NG    +L LF  +     +    T +  +   
Sbjct: 273 KMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVS 332

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYA----CMVDLLGRAGSLEQALKFVLEMPEKP 416
           GH  L+             Y +K     +A     +  +  +   +E A K   E PEK 
Sbjct: 333 GHLMLI--------YAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKS 384

Query: 417 NSDVWAALLS 426
               W A++S
Sbjct: 385 LPS-WNAMIS 393


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  268 bits (686), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 149/435 (34%), Positives = 242/435 (55%), Gaps = 13/435 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA + ++    N  ++  LL  + KC  L    ++FDE+P+R   +YN +IA Y  
Sbjct: 255 GHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAW 314

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR-NLGRMVHAQILKCDV 182
           N      L L R++   G       ++ +L  +        LP  ++G+ +HAQ++   +
Sbjct: 315 NQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGS------LPDVHIGKQIHAQLVLLGL 368

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-- 240
            ++D+L  AL+D Y K G    A+  F    EK+ I  T++I+G++  G  E+A ++F  
Sbjct: 369 ASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSD 428

Query: 241 --RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
             R  +  D   ++++I+  S S+       ++H  LI++ +   V  GS LVDMYAKCG
Sbjct: 429 MRRAGLRPDRATFSSIIKASS-SLAMIGLGRQLHSYLIRSGYKSSVFSGSVLVDMYAKCG 487

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            +D+A R FD M ++N  +W ++I  Y   G    A+++F  M  C   P+ VTFL  L+
Sbjct: 488 CLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPDSVTFLSVLA 547

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC H GL D+  + F  M+  YS+ P  EHYAC++D LGR G   Q  K ++EMP K + 
Sbjct: 548 ACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKMLVEMPFKADP 607

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            +W ++L SCR+H + E+A +AA+++F +   D    YV LSN  A AG+W+    +++ 
Sbjct: 608 IIWTSILHSCRIHGNQELARVAADKLFGMEPTD-ATPYVILSNIYARAGQWEDAACVKKI 666

Query: 479 MKLRGVLKDTGCSWV 493
           M+ RGV K++G SWV
Sbjct: 667 MRDRGVRKESGYSWV 681



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 98/365 (26%), Positives = 177/365 (48%), Gaps = 12/365 (3%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +H    K G+  +  +   LL  + K G L  A ++F E+  +    YN M+ G  K G 
Sbjct: 157 LHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGL 216

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
             ++L L   +  +G     +TFS IL  +      +     LG  VHA +L+     + 
Sbjct: 217 HTQALQLFAAMRRAGIPATHFTFSSILTVAAGMAHLL-----LGHQVHALVLRSTSVLNV 271

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT--- 243
            +  +L+D Y K       R +FD M E++ +    +I+ +           +FR+    
Sbjct: 272 FVNNSLLDFYSKCDCLDDMRRLFDEMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKL 331

Query: 244 -VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
             ++ ++ Y  M+   + S+       ++H QL+      +  LG+AL+DMY+KCG +D 
Sbjct: 332 GFDRQVLPYATMLS-VAGSLPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDA 390

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           A+  F +  +K+  +WT++I GY +NG   +AL+LF  M+   ++P+  TF   + A   
Sbjct: 391 AKSNFSNRSEKSAISWTALITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASSS 450

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
             ++  GR++   + R    K  +   + +VD+  + G L++AL+   EMPE+ NS  W 
Sbjct: 451 LAMIGLGRQLHSYLIRS-GYKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPER-NSISWN 508

Query: 423 ALLSS 427
           A++S+
Sbjct: 509 AVISA 513



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 76/303 (25%), Positives = 138/303 (45%), Gaps = 21/303 (6%)

Query: 78  PNTNISIKLLIL--HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVR 135
           P+ NI    LIL  +   G L  A  +F   P R  + +  M+  +   G+  ++LSL R
Sbjct: 70  PHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFR 129

Query: 136 KLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDS 195
            ++  G  PD  T + +L    C    VP        +H   +K  +     +   L+D+
Sbjct: 130 AMLGEGVIPDRVTVTTVLNLPGC---TVP-------SLHPFAIKFGLDTHVFVCNTLLDA 179

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVY 251
           Y K G  + AR VF  M +K+ +   +M+ G   +G    A ++F    R  +      +
Sbjct: 180 YCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTF 239

Query: 252 NAMIEGYSISIETARKAL--EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309
           ++++   +++   A   L  +VH  ++++    +V + ++L+D Y+KC  +DD RR+FD 
Sbjct: 240 SSIL---TVAAGMAHLLLGHQVHALVLRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDE 296

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKG 369
           M +++  ++  +I  Y  N      L LF  MQ+       + +   LS  G    V  G
Sbjct: 297 MPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIG 356

Query: 370 REI 372
           ++I
Sbjct: 357 KQI 359



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 108/254 (42%), Gaps = 34/254 (13%)

Query: 195 SYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAM 254
           S +  G    AR +FD M  KN+     ++S + S G +  A+ +F  +  ++   +  M
Sbjct: 52  SLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIM 111

Query: 255 IEGYSISIETARKALEVHCQLIKNVFFED----------------------VKLG----- 287
           +  ++ +  T+  AL +   ++      D                      +K G     
Sbjct: 112 MRAHAAAGRTS-DALSLFRAMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIKFGLDTHV 170

Query: 288 ---SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
              + L+D Y K G +  ARRVF  M  K+  T+ +M+ G  K G   QAL+LF  M+  
Sbjct: 171 FVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRA 230

Query: 345 CVQPNYVTFLGALS-ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE 403
            +   + TF   L+ A G A L+  G ++   + R  S+     + + ++D   +   L+
Sbjct: 231 GIPATHFTFSSILTVAAGMAHLL-LGHQVHALVLRSTSVLNVFVNNS-LLDFYSKCDCLD 288

Query: 404 QALKFVLEMPEKPN 417
              +   EMPE+ N
Sbjct: 289 DMRRLFDEMPERDN 302


>gi|414869441|tpg|DAA47998.1| TPA: hypothetical protein ZEAMMB73_181337 [Zea mays]
          Length = 639

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 159/469 (33%), Positives = 258/469 (55%), Gaps = 29/469 (6%)

Query: 40  SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTN-----ISIKLLILHLKCG 94
           ++P++ T L   ++  +   T  +G  IH H+   G  P+       +S  L  ++ K G
Sbjct: 62  ADPVSLTRL---VKLCVRHGTADHGRLIHRHVEAHGPLPHDGAGGLFVSNSLASMYAKFG 118

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLK-NGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
            L  A +MFD +P R +  +  ++A     +G+ +E+L  +  +   G  P+ YTFS +L
Sbjct: 119 LLDDALRMFDGMPVRNVVTWTTVVAALASADGRKQEALRFLVAMRRDGVAPNAYTFSSVL 178

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
            A T        P  L   VHA  +K  + +D  + ++L+D+YVK G     R VFD M+
Sbjct: 179 GACTT-------PGML-TAVHASTVKAGLDSDVFVRSSLIDAYVKLGDLDGGRRVFDEMV 230

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY------SISIETARK 267
            ++++   S+I+GF   G    A E+F +  +         +          + +E  R 
Sbjct: 231 TRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSSNQGTLTSVLRACTGMVMLEAGR- 289

Query: 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
             +VH  ++K  +  D+ L +AL+DMY KCG ++DA  +F  M Q++V +W++M+ G  +
Sbjct: 290 --QVHAHVLK--YDRDLILHNALLDMYCKCGSLEDADALFHRMPQRDVISWSTMVSGLAQ 345

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           NG   +AL +F +M+   V PN+VT +G L AC HAGLV+ G   F SM+R + ++P+ E
Sbjct: 346 NGKSVEALRVFDLMKSQGVAPNHVTMVGVLFACSHAGLVEDGWHYFRSMKRLFGIQPERE 405

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           H+ CMVDLLGRAG L++A++F+  M  +P+S +W  LL +CR+H +  +A  AA EI KL
Sbjct: 406 HHNCMVDLLGRAGKLDEAVEFIHGMSLEPDSVIWRTLLGACRMHKNASLAAYAAREILKL 465

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
             +D+ GA V LSNT A   +W    +  + M+ RG+ K+ G SW+  E
Sbjct: 466 EPDDQ-GARVLLSNTYADLRQWTDAEKPWKAMRDRGMRKEPGRSWIELE 513


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 159/470 (33%), Positives = 255/470 (54%), Gaps = 20/470 (4%)

Query: 34  QNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKC 93
           +N    ++ L+A +LP  + +         G +IH    K G+    ++   L+ ++ KC
Sbjct: 207 ENEFVFTSVLSALTLPELVNN---------GKQIHCIAVKNGLLSIVSVGNALVTMYAKC 257

Query: 94  GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
           G+L  A Q F+    +    ++ MI GY ++G  +++L L   +  SG RP  +TF  ++
Sbjct: 258 GSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVI 317

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
            A  C           G+ VH  +LK   ++   + TALVD Y K      AR  FD + 
Sbjct: 318 NA--CSDLGAAWE---GKQVHDYLLKLGFESQIYVMTALVDMYAKCSSIVDARKGFDYLQ 372

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE--- 270
           E +++  TSMI G++  G  EDA  ++ + +E + ++ N +     +   ++  ALE   
Sbjct: 373 EPDIVLWTSMIGGYVQNGENEDALSLYGR-MEMEGILPNELTMASVLKACSSLAALEQGK 431

Query: 271 -VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
            +H + +K  F  +V +GSAL  MYAKCG + D   VF  M  ++V +W +MI G  +NG
Sbjct: 432 QIHARTVKYGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNG 491

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
              +ALELF  MQ    +P+YVTF+  LSAC H GLV++G   F  M  ++ M P++EHY
Sbjct: 492 CGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHY 551

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
           ACMVD+L RAG L++A++F           +W  +L +CR + + E+   A  ++ +L +
Sbjct: 552 ACMVDILSRAGKLKEAIEFTESATIDHGMCLWRIILGACRNYRNYELGAYAGEKLMELGS 611

Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
            +   AYV LS+  +A G+W+ V  +R  MKLRGV K+ GCSW+  +SG+
Sbjct: 612 QE-SSAYVLLSSIYSALGRWEDVERVRRMMKLRGVSKEPGCSWIELKSGV 660



 Score =  175 bits (444), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 213/418 (50%), Gaps = 33/418 (7%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           S  +AL  Y ++ +   G  +HA I K+       I+  L+ L+ KC  L+ A  +F+ +
Sbjct: 8   SFFTALLQYTHNRSLQKGKALHAQIIKSS-SSCVYIANSLVNLYAKCQRLREAKFVFERI 66

Query: 107 PQRTLSAYNYMIAGYLKNGQVEES--LSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP 164
             + + ++N +I GY ++G    S  + L +++ +    P+ +TF+ +  A++       
Sbjct: 67  QNKDVVSWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAG 126

Query: 165 LPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
                GR+ HA  +K D   D  + ++L++ Y K G T  AR VFD M E+N +   +MI
Sbjct: 127 -----GRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMI 181

Query: 225 SGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVF 280
           SG+ SQ    +A  +F    R+   ++  V+ +++   ++  E      ++HC  +KN  
Sbjct: 182 SGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSALTLP-ELVNNGKQIHCIAVKNGL 240

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
              V +G+ALV MYAKCG +DDA + F+    KN  TW++MI GY ++G+ ++AL+LF  
Sbjct: 241 LSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSS 300

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH----YACMVDLL 396
           M    ++P+  TF+G ++AC   G   +G+++      DY +K   E        +VD+ 
Sbjct: 301 MHLSGIRPSEFTFVGVINACSDLGAAWEGKQV-----HDYLLKLGFESQIYVMTALVDMY 355

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLS----------SCRLHDDVEMANIAANEI 444
            +  S+  A K   +  ++P+  +W +++           +  L+  +EM  I  NE+
Sbjct: 356 AKCSSIVDARKG-FDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNEL 412



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 173/369 (46%), Gaps = 16/369 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G   HA   K     +  +   L+ ++ K G    A ++FD +P+R   ++  MI+GY  
Sbjct: 127 GRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYAS 186

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
                E+L L R +    E  + + F+ +L A T     +P   N G+ +H   +K  + 
Sbjct: 187 QKLAAEALGLFRLMRREEEGENEFVFTSVLSALT-----LPELVNNGKQIHCIAVKNGLL 241

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +   +  ALV  Y K G    A   F+   +KN I  ++MI+G+   G  + A ++F   
Sbjct: 242 SIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSM 301

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               +      +  +I   S  +  A +  +VH  L+K  F   + + +ALVDMYAKC  
Sbjct: 302 HLSGIRPSEFTFVGVINACS-DLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAKCSS 360

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I DAR+ FD++Q+ ++  WTSMI GY +NG    AL L+  M+   + PN +T    L A
Sbjct: 361 IVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKA 420

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C     +++G++I     + Y    ++   + +  +  + G L+        MP +   D
Sbjct: 421 CSSLAALEQGKQIHARTVK-YGFGLEVPIGSALSTMYAKCGCLKDGTLVFRRMPAR---D 476

Query: 420 V--WAALLS 426
           V  W A++S
Sbjct: 477 VISWNAMIS 485


>gi|449487256|ref|XP_004157540.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  268 bits (686), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 147/446 (32%), Positives = 250/446 (56%), Gaps = 44/446 (9%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE-RP 144
           L+ L+++ G  + A   F+++P R + ++N MI+GY + G   E+L++  K+++    +P
Sbjct: 214 LISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKP 273

Query: 145 DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSY 204
           D +T + IL A   C +   L  N+G+ +HA IL+ + +    +  AL+  Y K G    
Sbjct: 274 DNFTLASILSA---CANLEKL--NIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEI 328

Query: 205 ARIVFDMMLEKN--VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS--- 259
           AR++ +     N  +I  TS++ G+   G V+ A EIF K  ++D+V + AMI GY    
Sbjct: 329 ARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNG 388

Query: 260 ---------------------------ISIETARKALE----VHCQLIKNVFFEDVKLGS 288
                                      +S+ ++   LE    +H   IK        + +
Sbjct: 389 LWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTN 448

Query: 289 ALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347
           AL+ MYAK G I+ A+RVFD    +K + +WTSMI    ++G   +A+ LF  M    ++
Sbjct: 449 ALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMK 508

Query: 348 PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALK 407
           P+++T++G LSAC H GLV++GR+ +  M   + ++P + HYACM+DL GRAG L++A  
Sbjct: 509 PDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYL 568

Query: 408 FVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG 467
           F+  MP +P++  W +LL+SC++H + ++A +AA  +  ++  +  GAY+AL+N  +A G
Sbjct: 569 FIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGN-SGAYLALANVYSACG 627

Query: 468 KWDSVTELREKMKLRGVLKDTGCSWV 493
           KW++  + R+ MK RGV K+ G SW+
Sbjct: 628 KWENAAQTRKLMKDRGVRKEKGISWI 653



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 121/493 (24%), Positives = 212/493 (43%), Gaps = 109/493 (22%)

Query: 40  SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYA 99
           ++P ++      LQ  +    PF G  +H  I K G+     +   L+  + K G+L++A
Sbjct: 5   NSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFA 64

Query: 100 GQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV------------------------- 134
             +FDE+P ++  ++N +I+GY K G  E S  L+                         
Sbjct: 65  HHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFD 124

Query: 135 ------RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVL 188
                  K++S    P  +T S +L   + C +N  L  ++GR +H+ ++K  + +   +
Sbjct: 125 NAIWMFAKMISERVPPSQFTVSNVL---SSCAANQTL--DIGRKIHSFVVKLGLGSCVPV 179

Query: 189 YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI 248
            T+L++ Y K G    A++VFD M  KN+    ++IS +M  G  E A   F K  ++DI
Sbjct: 180 ATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDI 239

Query: 249 VVYNAMIEGYS----------------------------ISIETARKALE-------VHC 273
           V +N+MI GYS                             SI +A   LE       +H 
Sbjct: 240 VSWNSMISGYSQQGYNLEALAIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHA 299

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKID-------------------------------- 301
            +++        +G+AL+ MYAK G ++                                
Sbjct: 300 YILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNV 359

Query: 302 -DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
             AR +F+ ++ ++V  WT+MI GY +NG  N ALELF +M     +PN  T    LS  
Sbjct: 360 KPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVS 419

Query: 361 GHAGLVDKGREIFES-MERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
               +++ G++I  S ++   S  P + +   ++ +  + G++  A K V ++P      
Sbjct: 420 SSLTILEHGKQIHASAIKAGESSTPSVTN--ALIAMYAKTGNINVA-KRVFDLPNGKKEI 476

Query: 420 V-WAALLSSCRLH 431
           V W +++ +   H
Sbjct: 477 VSWTSMIMALAQH 489



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 144/312 (46%), Gaps = 23/312 (7%)

Query: 64  GLKIHAHITKTGVKPNTNIS--IKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           G++I   I +     N NI     LL  + K G +K A ++F++L  R + A+  MI GY
Sbjct: 325 GVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGY 384

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           ++NG   ++L L R +V+ G  P+ YT + +L  S    S++ +  + G+ +HA  +K  
Sbjct: 385 VQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVS----SSLTILEH-GKQIHASAIKAG 439

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDM-MLEKNVICSTSMISGFMSQGFVEDAEEIF 240
             +   +  AL+  Y K G  + A+ VFD+   +K ++  TSMI      G  ++A  +F
Sbjct: 440 ESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLF 499

Query: 241 RKTV----EKDIVVYNAMIEG--YSISIETARKALEVHCQLIKNVFFEDVKLG--SALVD 292
            + +    + D + Y  ++    +   +E  RK    +  ++  V   +  L   + ++D
Sbjct: 500 ERMLSVGMKPDHITYVGVLSACTHVGLVEQGRK----YYNMMTEVHEIEPTLSHYACMID 555

Query: 293 MYAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDG--YGKNGNPNQALELFCMMQECCVQPN 349
           +Y + G + +A    + M  + +   W S++      KN +  +      ++ +      
Sbjct: 556 LYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGA 615

Query: 350 YVTFLGALSACG 361
           Y+      SACG
Sbjct: 616 YLALANVYSACG 627



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 99/199 (49%), Gaps = 20/199 (10%)

Query: 31  PKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILH 90
           P+  +Y +L+  L+ +S  + L+H         G +IHA   K G     +++  L+ ++
Sbjct: 405 PEPNSY-TLAAMLSVSSSLTILEH---------GKQIHASAIKAGESSTPSVTNALIAMY 454

Query: 91  LKCGALKYAGQMFDELP--QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYT 148
            K G +  A ++FD LP  ++ + ++  MI    ++G  +E+++L  +++S G +PD  T
Sbjct: 455 AKTGNINVAKRVFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHIT 513

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKC-DVKADDVLYTALVDSYVKGGKTSYARI 207
           +  +L A T    +V L    GR  +  + +  +++     Y  ++D Y + G    A +
Sbjct: 514 YVGVLSACT----HVGLVEQ-GRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYL 568

Query: 208 VFDMM-LEKNVICSTSMIS 225
             + M +E + I   S+++
Sbjct: 569 FIESMPIEPDNIAWGSLLA 587


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  268 bits (685), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 157/435 (36%), Positives = 244/435 (56%), Gaps = 11/435 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH    KTG      +   ++ ++ KCG +  A  MF+ +P R L ++N MIAGY  
Sbjct: 92  GRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAACMFEVMPVRNLISWNAMIAGYTV 151

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV- 182
            G  E++L L +K+   G   D +TF+  LKA     S++   +  G  +HA ++     
Sbjct: 152 AGFCEKALVLFQKMQEVGGFLDEFTFTSTLKAC----SDLGAIKE-GNQIHAFLITGGFL 206

Query: 183 -KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
              +  +  AL+D YVK GK   AR VF  + EK+VI  T++I G+  +G + ++ E+FR
Sbjct: 207 YSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFR 266

Query: 242 KTVEKDIVVYNAMIE---GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
           +  E  I V   ++    G        ++  ++H   IK     D+ + ++++DMY KCG
Sbjct: 267 QLRESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCG 326

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            I++A R+F  M  +NV +WT MI GYGK+G   +A+ LF  MQ    +P+ VT+L  L 
Sbjct: 327 MINEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLL 386

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
            C H+GLV+KG+E F  +   + +K ++EHYACMVDLLGRAG L++A   V  MP + N 
Sbjct: 387 GCSHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANV 446

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            +W  LLS+CR+H D+E+       + +L++ + P  YV +SN  A AG W     +RE 
Sbjct: 447 GIWQTLLSACRVHGDLELGKEVGGILLRLDSEN-PVNYVMMSNIYADAGYWKECERIREL 505

Query: 479 MKLRGVLKDTGCSWV 493
           +K + + K+ G SWV
Sbjct: 506 VKSKKLKKEAGRSWV 520



 Score =  155 bits (391), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 105/390 (26%), Positives = 205/390 (52%), Gaps = 32/390 (8%)

Query: 75  GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV 134
           G   +  +S  L++++ KCG L  A  +FD + +R + ++  ++ G+++NG   ESL L 
Sbjct: 2   GFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLF 61

Query: 135 RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVD 194
            K+  SG +P+ +TFS  LKA  C   N     ++GR +H   +K      +V+  +++D
Sbjct: 62  SKMGLSGVKPNDFTFSTNLKA--CGLLN---GLDIGRQIHDICVKTGFDMVNVVGNSIID 116

Query: 195 SYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK----DIVV 250
            Y K G+ + A  +F++M  +N+I   +MI+G+   GF E A  +F+K  E     D   
Sbjct: 117 MYSKCGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFT 176

Query: 251 YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK--LGSALVDMYAKCGKIDDARRVFD 308
           + + ++  S  +   ++  ++H  LI   F   V   +  AL+D+Y KCGK+  ARRVF 
Sbjct: 177 FTSTLKACS-DLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFS 235

Query: 309 HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDK 368
           H+++K+V +WT++I GY + GN  +++ELF  ++E  +Q +       +       LV +
Sbjct: 236 HIEEKHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQ 295

Query: 369 GREIFESMERDYSMK--PKMEHYAC--MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAAL 424
           G+++       +++K    ++   C  ++D+  + G + +A +   EMP + N   W  +
Sbjct: 296 GKQM-----HAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPAR-NVISWTVM 349

Query: 425 LS----------SCRLHDDVEMANIAANEI 444
           ++          + RL D++++ +   +++
Sbjct: 350 ITGYGKHGLGKEAIRLFDEMQLDSTEPDDV 379


>gi|307136183|gb|ADN34022.1| hypothetical protein [Cucumis melo subsp. melo]
          Length = 773

 Score =  268 bits (685), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 139/401 (34%), Positives = 235/401 (58%), Gaps = 19/401 (4%)

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           ++F+ +P++ L ++N +IAG  +NG   E+L++VR++  +  +PD +T S +L       
Sbjct: 255 KIFEMMPEKDLVSWNTIIAGNARNGLYGETLTMVREMGGANLKPDSFTLSSVLPLIA--- 311

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
            NV + +  G+ +H   ++  + A+  + ++L+D Y K  +   +  VF ++ E++ I  
Sbjct: 312 ENVDISK--GKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISW 369

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS--------IETARKALEVH 272
            S+I+G +  G  ++  + FR+ +   I       + YS S        + T     ++H
Sbjct: 370 NSIIAGCVQNGLFDEGLKFFRQMLMAKI-----KPKSYSFSSIMPACAHLTTLHLGKQLH 424

Query: 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPN 332
             + +N F E++ + S+LVDMYAKCG I  AR++FD M+ +++ +WT+MI G   +G+  
Sbjct: 425 GYITRNGFDENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHAL 484

Query: 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACM 392
            A+ELF  M+   ++PNYV F+  L+AC HAGLVD+  + F SM  D+ + P +EHYA +
Sbjct: 485 DAIELFEQMKTEGIEPNYVAFMAVLTACSHAGLVDEAWKYFNSMTLDFGIAPGVEHYAAV 544

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR 452
            DLLGRAG LE+A  F+  MP  P   VWA LLS+CR+H +V+MA   AN I +++  + 
Sbjct: 545 SDLLGRAGRLEEAYDFICGMPIGPTGSVWATLLSACRVHKNVDMAEKVANRILEVDPKN- 603

Query: 453 PGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            GAY+ L+N  +AA +W    + R  ++  G+ K   CSW+
Sbjct: 604 TGAYILLANIYSAARRWKEAAKWRASLRRTGIRKTPACSWI 644



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/306 (23%), Positives = 131/306 (42%), Gaps = 53/306 (17%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH    + G+     ++  L+ ++ KC  +  + ++F  L +R   ++N +IAG ++
Sbjct: 319 GKEIHGCSIRQGLDAEVYVASSLIDMYAKCTRVVDSYRVFTLLTERDGISWNSIIAGCVQ 378

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  +E L   R+++ +  +P  Y+FS I+ A   C     L  +LG+ +H  I +    
Sbjct: 379 NGLFDEGLKFFRQMLMAKIKPKSYSFSSIMPA---CAHLTTL--HLGKQLHGYITRNGFD 433

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +  + ++LVD Y K G    AR +FD M  ++++  T+MI G    G   DA E+F + 
Sbjct: 434 ENIFIASSLVDMYAKCGNIRTARQIFDRMRLRDMVSWTAMIMGCALHGHALDAIELFEQM 493

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               +E + V + A++   S                                      G 
Sbjct: 494 KTEGIEPNYVAFMAVLTACS------------------------------------HAGL 517

Query: 300 IDDARRVFDHMQ-----QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           +D+A + F+ M         V  + ++ D  G+ G   +A +  C M    + P    + 
Sbjct: 518 VDEAWKYFNSMTLDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMP---IGPTGSVWA 574

Query: 355 GALSAC 360
             LSAC
Sbjct: 575 TLLSAC 580



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 143/337 (42%), Gaps = 32/337 (9%)

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           ++F+ L      A+  +I  Y  +G   +SL     +++SG  PD   F  +LKA     
Sbjct: 63  RLFNTLHFPPALAWKSVIRCYTSHGLPHKSLGSFIGMLASGLYPDHNVFPSVLKACA--- 119

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVK-------GGKTSYARIVFDMML 213
             + +  NLG  +H  I++  +  D     AL++ Y K       G +   A  V D M 
Sbjct: 120 --MLMDLNLGESLHGYIIRVGLDFDLYTGNALMNMYSKLRFLKKSGRQRLGASQVLDEMT 177

Query: 214 EKN-VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVH 272
           E+   + + S++ G  +QG         RK    DI  +N  +   S   E   + LE+ 
Sbjct: 178 ERTRSVRTASVLVG--NQG---------RKV--SDIEAFNYDVSCRSREFEA--QVLEID 222

Query: 273 CQLIKNVF-FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
            +        E   LG  + D+ +    +D  R++F+ M +K++ +W ++I G  +NG  
Sbjct: 223 YKPRSEYREMEACNLGQQIKDI-SHSMSVDSVRKIFEMMPEKDLVSWNTIIAGNARNGLY 281

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC 391
            + L +   M    ++P+  T    L        + KG+EI     R   +  ++   + 
Sbjct: 282 GETLTMVREMGGANLKPDSFTLSSVLPLIAENVDISKGKEIHGCSIRQ-GLDAEVYVASS 340

Query: 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
           ++D+  +   +  + +    + E+ +   W ++++ C
Sbjct: 341 LIDMYAKCTRVVDSYRVFTLLTER-DGISWNSIIAGC 376


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 148/438 (33%), Positives = 241/438 (55%), Gaps = 41/438 (9%)

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149
           +++ G +  A ++FD +P R   ++  MIAGY +NG+ EE+L L++ L  +G  P   + 
Sbjct: 362 YMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSL 421

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVF 209
           +    A   C     L    GR VH+  +K   + +  +  AL+  Y K     Y R VF
Sbjct: 422 TSSFLA---CSHIGAL--ETGRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVF 476

Query: 210 DMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS-------- 261
           + M  K+ +   S I+  +    +EDA  IF   + +D+V +  +I  Y+ +        
Sbjct: 477 NRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVE 536

Query: 262 --------------------------IETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
                                     + +A+   ++H   IK+    ++ + +AL+ MY 
Sbjct: 537 FFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYF 596

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KCG   D+ +VFD M+++++FTW + I G  ++G   +A++++  M+   V PN VTF+G
Sbjct: 597 KCG-CADSHKVFDSMEERDIFTWNTFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVG 655

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            L+AC HAGLVD+G + F+SM RDY + P +EHYACMVDLLGR G ++ A KF+ +MP +
Sbjct: 656 LLNACSHAGLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIE 715

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
           P++ +W+ALL +C++H + E+   AA ++F    ++  G YV LSN  ++ G W  V EL
Sbjct: 716 PDTVIWSALLGACKIHKNAEIGRRAAEKLFTTEPSN-AGNYVMLSNIYSSLGMWVEVAEL 774

Query: 476 REKMKLRGVLKDTGCSWV 493
           R+ MK RGV K+ GCSW+
Sbjct: 775 RKIMKQRGVSKEPGCSWM 792



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 87/372 (23%), Positives = 169/372 (45%), Gaps = 62/372 (16%)

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           + G L+ A ++FD +P R + A+N MI+ Y  +G +E++  L   +     R    T ++
Sbjct: 45  RLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVR----TATI 100

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQ-ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFD 210
           +L               LGR++ A+ +     + + V + A+V  YV+ G  + AR +FD
Sbjct: 101 LLSGYA----------RLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARRLFD 150

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKA-- 268
            M  ++V    SM++G+     + DA  +F++  ++++V +  MI GY + IE   K   
Sbjct: 151 AMPSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGY-VRIEQHGKGWD 209

Query: 269 --------------------------------LEVHCQLIKNVFFE-DVKLGSALVDMYA 295
                                           LEV   L+    FE DV +G++++++Y 
Sbjct: 210 IFRMMHHEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYT 269

Query: 296 K-CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           +    +D A + FD M ++N +TW++MI      G  + A+ ++       + P+    L
Sbjct: 270 RDASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSI-PSQTALL 328

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             L+ CG    + + R +FE +       P +  +  M+    + G +++A +    MP 
Sbjct: 329 TGLARCGR---ITEARILFEQIP-----DPIVVSWNAMITGYMQNGMVDEAKELFDRMPF 380

Query: 415 KPNSDVWAALLS 426
           + N+  WA +++
Sbjct: 381 R-NTISWAGMIA 391



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 135/279 (48%), Gaps = 19/279 (6%)

Query: 99  AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
           A  +F ++PQR L  +  MI+GY++  Q  +   + R +   G  PD   F+ +L A T 
Sbjct: 176 AWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVLSAVTG 235

Query: 159 CRSNVPLPRNLG--RMVHAQILKCDVKADDVLYTALVDSYVKGGKT-SYARIVFDMMLEK 215
            +       +LG   ++   +LK   ++D V+ T++++ Y +       A   FD M+E+
Sbjct: 236 LQ-------DLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALDIAIKFFDGMVER 288

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI--SIETARKALEVHC 273
           N    ++MI+     G ++ A  ++ +   K I    A++ G +    I  AR   E   
Sbjct: 289 NEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSIPSQTALLTGLARCGRITEARILFE--- 345

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
           Q+   +    V   +A++  Y + G +D+A+ +FD M  +N  +W  MI GY +NG   +
Sbjct: 346 QIPDPI----VVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSEE 401

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           AL+L   +    + P+  +   +  AC H G ++ GR++
Sbjct: 402 ALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQV 440



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 125/264 (47%), Gaps = 15/264 (5%)

Query: 169 LGRMVHA-QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
           LGR+  A ++       D + + +++ +Y   G    ARI+FD +   NV  +T ++SG+
Sbjct: 46  LGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTATILLSGY 105

Query: 228 MSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY--SISIETARKALEVHCQLIKNVFFEDVK 285
              G V DA  +F    E++ V +NAM+  Y  +  I  AR+       L   +   DV 
Sbjct: 106 ARLGRVLDARRVFDGMPERNTVAWNAMVSCYVQNGDITMARR-------LFDAMPSRDVT 158

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
             +++V  Y    ++ DA  +F  M Q+N+ TWT MI GY +     +  ++F MM    
Sbjct: 159 SWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEG 218

Query: 346 VQPNYVTFLGALSACGHAGLVDKG-REIFESMERDYSMKPKMEHYACMVDLLGR-AGSLE 403
             P+   F   LSA    GL D G  E+   +      +  +     ++++  R A +L+
Sbjct: 219 ASPDQSNFASVLSAV--TGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASALD 276

Query: 404 QALKFVLEMPEKPNSDVWAALLSS 427
            A+KF   M E+ N   W+ ++++
Sbjct: 277 IAIKFFDGMVER-NEYTWSTMIAA 299



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 63/324 (19%), Positives = 137/324 (42%), Gaps = 27/324 (8%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H+   K G + N+ +   L+ ++ KC  ++Y  Q+F+ +  +   ++N  IA  ++
Sbjct: 437 GRQVHSLAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQ 496

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N  +E++  +   ++S     D  +++ I+ A                M+H        K
Sbjct: 497 NNMLEDARHIFDNMLSR----DVVSWTTIISAYAQAERGDEAVEFFKTMLHEH-----EK 547

Query: 184 ADDVLYTALVDSYVKGGKTS------YARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
            +  + T L+   V GG  S         +     ++  +I + +++S +   G   D+ 
Sbjct: 548 PNSPILTILLS--VCGGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCG-CADSH 604

Query: 238 EIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           ++F    E+DI  +N  I G +      R+A++++  +       +      L++  +  
Sbjct: 605 KVFDSMEERDIFTWNTFITGCA-QHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHA 663

Query: 298 GKIDDARRVFDHMQQKNVFT-----WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           G +D+  + F  M +    T     +  M+D  G+ G+  Q  E F  + +  ++P+ V 
Sbjct: 664 GLVDEGWQFFKSMSRDYGLTPLLEHYACMVDLLGRTGDV-QGAEKF--IYDMPIEPDTVI 720

Query: 353 FLGALSACGHAGLVDKGREIFESM 376
           +   L AC      + GR   E +
Sbjct: 721 WSALLGACKIHKNAEIGRRAAEKL 744


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 149/434 (34%), Positives = 251/434 (57%), Gaps = 13/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCG---ALKYAGQMFDELPQRTLSAYNYMIAG 120
           G ++H+   + G+  ++ +S  L+ ++ K     ++++A ++F  +P+  + ++  +I+G
Sbjct: 265 GQQLHSVALRLGLVSDSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISG 324

Query: 121 YLKNGQVEES-LSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           Y+++G  E + ++L R++++   RP+  T+S +LKA     +N+   ++ GR +HA +LK
Sbjct: 325 YVQSGVQENNVMALFREMLNESIRPNHITYSNLLKAC----ANLS-DQDSGRQIHAHVLK 379

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
             +   +V+  ALV  Y + G    AR  FD + E N++  +  +    +        E 
Sbjct: 380 TSIAHVNVVGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETERNNASCSSKIEG 439

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               V      + +++   + S+    K  ++H   +K  F  D  + ++LV MYA+CG 
Sbjct: 440 MDDGVST--FTFASLLSA-AASVGLLTKGQKLHALSMKAGFRSDQGISNSLVSMYARCGY 496

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ++DA R FD M+  NV +WTS+I G  K+G   QAL +F  M    V+PN VT++  LSA
Sbjct: 497 LEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAVLSA 556

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H GLV +G+E F SM++D+ + P+MEHYAC+VDLL R+G +E+A +F+ EMP K ++ 
Sbjct: 557 CSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQFINEMPCKADAL 616

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW  LLS+CR + + E+  IAAN +  L   D P  YV LSN  A AG WD V  +R  M
Sbjct: 617 VWKTLLSACRTYGNTEIGEIAANHVINLEPRD-PAPYVLLSNLYADAGLWDEVARIRSLM 675

Query: 480 KLRGVLKDTGCSWV 493
           + + + K+TG SW+
Sbjct: 676 RDKNLSKETGLSWM 689



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 175/363 (48%), Gaps = 33/363 (9%)

Query: 64  GLKIHAHITKTGV-KPNTNISIKLLILHLKCGALKYAGQMFDEL-PQRTLSAYNYMIAGY 121
           G  +H  + ++ +   +  ++  LL ++ KCGA++ A ++FD++   R L ++  M +  
Sbjct: 59  GRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAMASCL 118

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRM----VHAQI 177
            +NG   ESL L+ +++  G RP+ +T         C  +    P+ L R+    V   +
Sbjct: 119 ARNGAERESLRLLGEMLELGLRPNAFTL--------CAAARACFPQELFRLAGGVVLGFV 170

Query: 178 LKCDVKADDV-LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
           LK      DV +  AL+D + + G    A+ VFD ++E+  +  T +I+ ++  G     
Sbjct: 171 LKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKV 230

Query: 237 EEIFRKTV----EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVD 292
            E+F   +    E D    ++MI   +  + + R   ++H   ++     D  +   LVD
Sbjct: 231 VELFLHMLDDGFEPDGYSMSSMISACT-ELGSVRLGQQLHSVALRLGLVSDSCVSCGLVD 289

Query: 293 MYAKCG---KIDDARRVFDHMQQKNVFTWTSMIDGYGKNG-NPNQALELFCMMQECCVQP 348
           MYAK      ++ AR+VF  M + NV +WT++I GY ++G   N  + LF  M    ++P
Sbjct: 290 MYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNESIRP 349

Query: 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY----ACMVDLLGRAGSLEQ 404
           N++T+   L AC +    D GR+I       + +K  + H       +V +   +G +E+
Sbjct: 350 NHITYSNLLKACANLSDQDSGRQIHA-----HVLKTSIAHVNVVGNALVSMYAESGCMEE 404

Query: 405 ALK 407
           A K
Sbjct: 405 ARK 407



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 103/429 (24%), Positives = 198/429 (46%), Gaps = 30/429 (6%)

Query: 71  ITKTGV-KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEE 129
           + KTG    + ++   L+ +  + G L  A ++FD L +RT   +  +I  Y++ G   +
Sbjct: 170 VLKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASK 229

Query: 130 SLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLY 189
            + L   ++  G  PDGY+ S ++ A T   S       LG+ +H+  L+  + +D  + 
Sbjct: 230 VVELFLHMLDDGFEPDGYSMSSMISACTELGS-----VRLGQQLHSVALRLGLVSDSCVS 284

Query: 190 TALVDSYVK---GGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA-----EEIFR 241
             LVD Y K        +AR VF  M   NV+  T++ISG++  G  E+       E+  
Sbjct: 285 CGLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLN 344

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
           +++  + + Y+ +++  + ++       ++H  ++K        +G+ALV MYA+ G ++
Sbjct: 345 ESIRPNHITYSNLLKACA-NLSDQDSGRQIHAHVLKTSIAHVNVVGNALVSMYAESGCME 403

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           +AR+ FD + + N+ + +  ++    N + +  +E    M +     +  TF   LSA  
Sbjct: 404 EARKAFDQLYETNILSMSPDVETERNNASCSSKIE---GMDD---GVSTFTFASLLSAAA 457

Query: 362 HAGLVDKGREIFE-SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
             GL+ KG+++   SM+  +     + +   +V +  R G LE A +   EM +  N   
Sbjct: 458 SVGLLTKGQKLHALSMKAGFRSDQGISN--SLVSMYARCGYLEDACRAFDEMKDH-NVIS 514

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W +++S    H   + A    +++           Y+A+   L+A      V E +E   
Sbjct: 515 WTSIISGLAKHGYAKQALSMFHDMILAGVKPNDVTYIAV---LSACSHVGLVKEGKE--H 569

Query: 481 LRGVLKDTG 489
            R + KD G
Sbjct: 570 FRSMQKDHG 578


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 140/432 (32%), Positives = 254/432 (58%), Gaps = 13/432 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+ +H ++ K G++ +  +S  L+ ++ K G L+ A ++FD +  R L ++N +IA Y +
Sbjct: 267 GVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQ 326

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD-V 182
           N     +L   ++++  G RPD    +++  AS   + +    R +GR VH  +++C  +
Sbjct: 327 NDDPVTALGFFKEMLFVGMRPD--LLTVVSLASIFGQLS---DRRIGRAVHGFVVRCRWL 381

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           + D V+  ALV+ Y K G    AR VF+ +  ++VI   ++I+G+   G   +A + +  
Sbjct: 382 EVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNM 441

Query: 243 TVEKDIVVYN-----AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
             E   +V N     +++  YS  +   ++ +++H +LIKN  F DV + + L+DMY KC
Sbjct: 442 MEEGRTIVPNQGTWVSILPAYS-HVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKC 500

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G+++DA  +F  + Q+    W ++I   G +G+  +AL+LF  M+   V+ +++TF+  L
Sbjct: 501 GRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLL 560

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           SAC H+GLVD+ +  F++M+++Y +KP ++HY CMVDL GRAG LE+A   V  MP + +
Sbjct: 561 SACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQAD 620

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
           + +W  LL++CR+H + E+   A++ + ++++ +  G YV LSN  A  GKW+   ++R 
Sbjct: 621 ASIWGTLLAACRIHGNAELGTFASDRLLEVDSEN-VGYYVLLSNIYANVGKWEGAVKVRS 679

Query: 478 KMKLRGVLKDTG 489
             + RG+ K  G
Sbjct: 680 LARDRGLRKTPG 691



 Score =  168 bits (425), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 130/483 (26%), Positives = 246/483 (50%), Gaps = 52/483 (10%)

Query: 24  PPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNIS 83
           P   TFPP L+   SL++                      G K+H  + K G + +  ++
Sbjct: 148 PDFYTFPPVLKACLSLAD----------------------GEKMHCWVLKMGFEHDVYVA 185

Query: 84  IKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGER 143
             L+ L+ + GA++ A ++F ++P R + ++N MI+G+ +NG V E+L ++ ++ +   +
Sbjct: 186 ASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMKTEEVK 245

Query: 144 PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTS 203
            D  T S +L    C +SN  +    G +VH  ++K  +++D  +  AL++ Y K G+  
Sbjct: 246 MDTVTVSSML--PICAQSNDVVG---GVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQ 300

Query: 204 YARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV----EKDI--VVYNAMIEG 257
            A+ VFD M  ++++   S+I+ +        A   F++ +      D+  VV  A I G
Sbjct: 301 DAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSLASIFG 360

Query: 258 YSISIETARKALEVHCQLIKNVFFE-DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF 316
               +   R    VH  +++  + E D+ +G+ALV+MYAK G ID AR VF+ +  ++V 
Sbjct: 361 ---QLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVI 417

Query: 317 TWTSMIDGYGKNGNPNQALELFCMMQEC-CVQPNYVTFLGALSACGHAGLVDKGREIFES 375
           +W ++I GY +NG  ++A++ + MM+E   + PN  T++  L A  H G + +G +I   
Sbjct: 418 SWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGR 477

Query: 376 MERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVE 435
           + ++  +   +    C++D+ G+ G LE A+    E+P++  S  W A++SS  +H   E
Sbjct: 478 LIKN-CLFLDVFVATCLIDMYGKCGRLEDAMSLFYEIPQE-TSVPWNAIISSLGIHGHGE 535

Query: 436 MANIAANEIFK-LNANDRPGAYVALSNTLAAAGKWDSVTE-------LREKMKLRGVLKD 487
                A ++FK + A+     ++   + L+A      V E       ++++ +++  LK 
Sbjct: 536 ----KALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQWCFDTMQKEYRIKPNLKH 591

Query: 488 TGC 490
            GC
Sbjct: 592 YGC 594



 Score =  137 bits (346), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 110/419 (26%), Positives = 194/419 (46%), Gaps = 41/419 (9%)

Query: 25  PNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPF---------------------- 62
           P + F P LQ    L  P       S+LQH I+ D                         
Sbjct: 9   PPRNFKPILQ----LQQPCIYHFFSSSLQHKISHDPDNKNNKNNNVVVDFNLVFRSCTNI 64

Query: 63  -YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
               ++HA +   G   +  +  +L+ L+   G L  +   F  + ++ + ++N M++ Y
Sbjct: 65  NVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAY 124

Query: 122 LKNGQVEESLSLVRKLVS-SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
           ++ G+  +S+  V +L+S SG RPD YTF  +LKA   C S        G  +H  +LK 
Sbjct: 125 VRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKA---CLSLAD-----GEKMHCWVLKM 176

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
             + D  +  +L+  Y + G    A  VF  M  ++V    +MISGF   G V +A  + 
Sbjct: 177 GFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVL 236

Query: 241 RKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
            +     V+ D V  ++M+   + S +     L VH  +IK+    DV + +AL++MY+K
Sbjct: 237 DRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVL-VHLYVIKHGLESDVFVSNALINMYSK 295

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
            G++ DA+RVFD M+ +++ +W S+I  Y +N +P  AL  F  M    ++P+ +T +  
Sbjct: 296 FGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSL 355

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            S  G       GR +   + R   ++  +     +V++  + GS++ A     ++P +
Sbjct: 356 ASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSR 414



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 68/275 (24%), Positives = 130/275 (47%), Gaps = 19/275 (6%)

Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
           N+ + +HA +L      D VL T LV  Y   G  S +   F  +  KN+    SM+S +
Sbjct: 65  NVAKQLHALLLVLGKAQDVVLLTQLVTLYATLGDLSLSSTTFKHIQRKNIFSWNSMVSAY 124

Query: 228 MSQGFVEDA-----EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
           + +G   D+     E +    V  D   +  +++   +S+    K   +HC ++K  F  
Sbjct: 125 VRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKA-CLSLADGEK---MHCWVLKMGFEH 180

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           DV + ++L+ +Y++ G ++ A +VF  M  ++V +W +MI G+ +NGN  +AL +   M+
Sbjct: 181 DVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMK 240

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA----CMVDLLGR 398
              V+ + VT    L  C  +  V  G      +   Y +K  +E        ++++  +
Sbjct: 241 TEEVKMDTVTVSSMLPICAQSNDVVGG-----VLVHLYVIKHGLESDVFVSNALINMYSK 295

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDD 433
            G L+ A + V +  E  +   W +++++   +DD
Sbjct: 296 FGRLQDAQR-VFDGMEVRDLVSWNSIIAAYEQNDD 329


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  268 bits (685), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 136/435 (31%), Positives = 254/435 (58%), Gaps = 11/435 (2%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G  +H  I + G+  +      L+ ++ K   +    ++F+ +P++ + +YN +IAGY 
Sbjct: 123 FGESVHGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYA 182

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           ++G  E++L +VR++ +S  +PD +T S +L   +     V + +  G+ +H  +++  +
Sbjct: 183 QSGMYEDALRMVREMGTSDLKPDAFTLSSVLPIFS---EYVDVLK--GKEIHGYVIRKGI 237

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            +D  + ++LVD Y K  +   +  VF  +  ++ I   S+++G++  G   +A  +FR+
Sbjct: 238 DSDVYIGSSLVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQ 297

Query: 243 TVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
            V   +    V ++++I   +  + T     ++H  +++  F  ++ + SALVDMY+KCG
Sbjct: 298 MVSAKVRPGAVAFSSVIPACA-HLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCG 356

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            I  AR++FD M   +  +WT++I G+  +G+ ++A+ LF  M+   V+PN V F+  L+
Sbjct: 357 NIQAARKIFDRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLT 416

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC H GLVD+    F SM + Y +  ++EHYA + DLLGRAG LE+A  F+ +M  +P  
Sbjct: 417 ACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTG 476

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            VW+ LLSSC +H ++E+A   A +IF +++ +  GAYV + N  A+ G+W  + +LR +
Sbjct: 477 SVWSTLLSSCSVHKNLELAEKVAEKIFTIDSENM-GAYVLMCNMYASNGRWKEMAKLRLR 535

Query: 479 MKLRGVLKDTGCSWV 493
           ++ +G+ K   CSW+
Sbjct: 536 VRKKGLRKKPACSWI 550



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 115/466 (24%), Positives = 209/466 (44%), Gaps = 51/466 (10%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++HA   +T    +T+ SI ++ ++     L  A  +F  L    + A+  +I  +    
Sbjct: 26  QLHAQFIRTQSLSHTSASI-VISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCFTDQS 84

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
               +L+   ++ +SG  PD   F  +LK+ T     + +    G  VH  I++  +  D
Sbjct: 85  LFSRALASFVEMRASGRCPDHNVFPSVLKSCT-----MMMDLRFGESVHGFIVRLGMDCD 139

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT-- 243
                AL++ Y K       R VF++M  K+V+   ++I+G+   G  EDA  + R+   
Sbjct: 140 LYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGT 199

Query: 244 --VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
             ++ D    ++++  +S  ++   K  E+H  +I+     DV +GS+LVDMYAK  +I+
Sbjct: 200 SDLKPDAFTLSSVLPIFSEYVDVL-KGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIE 258

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           D+ RVF H+ +++  +W S++ GY +NG  N+AL LF  M    V+P  V F   + AC 
Sbjct: 259 DSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACA 318

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM--------- 412
           H   +  G+++   + R       +   + +VD+  + G+++ A K    M         
Sbjct: 319 HLATLHLGKQLHGYVLRG-GFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWT 377

Query: 413 -------------------------PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
                                      KPN   + A+L++C     V+ A    N + K+
Sbjct: 378 AIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKV 437

Query: 448 -NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSW 492
              N     Y A+++ L  AGK +   +   KM+    ++ TG  W
Sbjct: 438 YGLNQELEHYAAVADLLGRAGKLEEAYDFISKMR----VEPTGSVW 479



 Score = 91.7 bits (226), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 168/382 (43%), Gaps = 59/382 (15%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           A +L S L  +        G +IH ++ + G+  +  I   L+ ++ K   ++ + ++F 
Sbjct: 206 AFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFS 265

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP 164
            L +R   ++N ++AGY++NG+  E+L L R++VS+  RP    FS ++ A   C     
Sbjct: 266 HLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPA---CAHLAT 322

Query: 165 LPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
           L  +LG+ +H  +L+     +  + +ALVD Y K G    AR +FD M   + +  T++I
Sbjct: 323 L--HLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWTAII 380

Query: 225 SGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVF 280
            G    G   +A    EE+ R+ V+ + V + A++   S                     
Sbjct: 381 MGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACS--------------------- 419

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-----KNVFTWTSMIDGYGKNGNPNQAL 335
                            G +D+A   F+ M +     + +  + ++ D  G+ G   +A 
Sbjct: 420 ---------------HVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAY 464

Query: 336 ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM-ERDYSMKPK-MEHYACMV 393
           +    M+   V+P    +   LS+C     V K  E+ E + E+ +++  + M  Y  M 
Sbjct: 465 DFISKMR---VEPTGSVWSTLLSSCS----VHKNLELAEKVAEKIFTIDSENMGAYVLMC 517

Query: 394 DLLGRAGSLEQALKFVLEMPEK 415
           ++    G  ++  K  L + +K
Sbjct: 518 NMYASNGRWKEMAKLRLRVRKK 539


>gi|449448280|ref|XP_004141894.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
 gi|449513125|ref|XP_004164238.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Cucumis sativus]
          Length = 645

 Score =  268 bits (684), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 154/464 (33%), Positives = 248/464 (53%), Gaps = 50/464 (10%)

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           L+IHA + + G+  N  ++ KL   +   G L  +  +F+   +  + +++ +I  ++++
Sbjct: 64  LQIHASLLRRGLYHNPILNFKLQRSYAALGRLDCSVFVFNTFDEPNVFSFSAIIHSHVQS 123

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
              + +     +++S G  P+ +TFS +LK+ +            G+++H Q +K  + +
Sbjct: 124 RLFDRAFGYYSQMLSCGVEPNAFTFSSVLKSCSL---------ESGKVLHCQAIKLGLGS 174

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
           D  + T LVD Y +GG    AR +FD M E++++  T+M++ +   G ++ A  +F    
Sbjct: 175 DLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSKMGELDKARSLFEGMK 234

Query: 245 EKDIVVYNAMIEGYSIS------IETARK------------------------ALE---- 270
           E+D+V +N MI GY+ S      ++  R+                        ALE    
Sbjct: 235 ERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAVLSACGQLGALESGRW 294

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           +H  +       +V +G+AL+DMY+KCG ++DAR VFD ++ K+V  W SMI GY  +G 
Sbjct: 295 IHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAMHGF 354

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
              AL+LF  M E   +P  +TF+G LSACGH GLV++GR  F  M   Y ++PK+EHY 
Sbjct: 355 SQHALQLFEEMTETGHKPTDITFIGILSACGHGGLVEEGRSFFRLMRDKYGIEPKIEHYG 414

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
           CMV+LLGRAG LE+A   V  M    +  +W  LL  CRLH ++++      EI K   +
Sbjct: 415 CMVNLLGRAGHLEEAYGLVKNMTIAADPVLWGTLLGCCRLHVNIKL----GEEIAKFLVD 470

Query: 451 DR---PGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
            +    G YV LSN  AA G W+ V ++R  MK  G+ K+ GCS
Sbjct: 471 QKLANSGTYVLLSNMYAATGNWEGVAKMRTLMKEHGIEKEHGCS 514



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/213 (26%), Positives = 98/213 (46%), Gaps = 36/213 (16%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSA---------- 113
           G  +H    K G+  +  +   L+ ++ + G +  A Q+FD++P+R+L +          
Sbjct: 160 GKVLHCQAIKLGLGSDLYVRTGLVDVYARGGDVVCARQLFDKMPERSLVSLTTMLTCYSK 219

Query: 114 ---------------------YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
                                +N MI GY ++G   ESL L R+++ +   P+  T   +
Sbjct: 220 MGELDKARSLFEGMKERDVVCWNVMIGGYAQSGVPNESLKLFRRMLVAKAIPNEVTVLAV 279

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L A   C     L    GR +H+ I    ++ +  + TAL+D Y K G    AR+VFD +
Sbjct: 280 LSA---CGQLGALES--GRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRI 334

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
            +K+V+   SMI G+   GF + A ++F +  E
Sbjct: 335 RDKDVVAWNSMIVGYAMHGFSQHALQLFEEMTE 367



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 53/92 (57%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH++I   G++ N ++   L+ ++ KCG+L+ A  +FD +  + + A+N MI GY  
Sbjct: 292 GRWIHSYIENKGIQINVHVGTALIDMYSKCGSLEDARLVFDRIRDKDVVAWNSMIVGYAM 351

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           +G  + +L L  ++  +G +P   TF  IL A
Sbjct: 352 HGFSQHALQLFEEMTETGHKPTDITFIGILSA 383


>gi|15239979|ref|NP_201453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171133|sp|Q9FJY7.1|PP449_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g66520
 gi|10177533|dbj|BAB10928.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332010841|gb|AED98224.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 620

 Score =  268 bits (684), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 158/469 (33%), Positives = 250/469 (53%), Gaps = 45/469 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGA---LKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +IHA + KTG+  ++    K L   +   +   L YA  +FD   +     +N MI G+ 
Sbjct: 32  QIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFS 91

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            + + E SL L ++++ S    + YTF  +LKA     SN+       + +HAQI K   
Sbjct: 92  CSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKAC----SNLSAFEETTQ-IHAQITKLGY 146

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           + D     +L++SY   G    A ++FD + E + +   S+I G++  G ++ A  +FRK
Sbjct: 147 ENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRK 206

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALE-------------------------------- 270
             EK+ + +  MI GY +  +  ++AL+                                
Sbjct: 207 MAEKNAISWTTMISGY-VQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQ 265

Query: 271 ---VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
              +H  L K     D  LG  L+DMYAKCG++++A  VF ++++K+V  WT++I GY  
Sbjct: 266 GKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAY 325

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           +G+  +A+  F  MQ+  ++PN +TF   L+AC + GLV++G+ IF SMERDY++KP +E
Sbjct: 326 HGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIE 385

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           HY C+VDLLGRAG L++A +F+ EMP KPN+ +W ALL +CR+H ++E+       +  +
Sbjct: 386 HYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAI 445

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
           +     G YV  +N  A   KWD   E R  MK +GV K  GCS +  E
Sbjct: 446 DPY-HGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLE 493



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 138/314 (43%), Gaps = 31/314 (9%)

Query: 40  SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYA 99
           S P  A + PS L+   N        +IHA ITK G + +      L+  +   G  K A
Sbjct: 110 SAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLA 169

Query: 100 GQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL-----VSSGERPDGYTFSMI-- 152
             +FD +P+    ++N +I GY+K G+++ +L+L RK+     +S      GY  + +  
Sbjct: 170 HLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNK 229

Query: 153 --------LKASTCCRSNVPLPRNL-----------GRMVHAQILKCDVKADDVLYTALV 193
                   ++ S     NV L   L           G+ +H+ + K  ++ D VL   L+
Sbjct: 230 EALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLI 289

Query: 194 DSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEIFRKTVEKDIV 249
           D Y K G+   A  VF  + +K+V   T++ISG+   G   +A     E+ +  ++ +++
Sbjct: 290 DMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVI 349

Query: 250 VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309
            + A++   S +       L  +           ++    +VD+  + G +D+A+R    
Sbjct: 350 TFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQE 409

Query: 310 MQQK-NVFTWTSMI 322
           M  K N   W +++
Sbjct: 410 MPLKPNAVIWGALL 423



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 104/215 (48%), Gaps = 20/215 (9%)

Query: 32  KLQNYD------SLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIK 85
           ++QN D      SL+N L+A +   AL+          G  IH+++ KT ++ ++ +   
Sbjct: 237 EMQNSDVEPDNVSLANALSACAQLGALEQ---------GKWIHSYLNKTRIRMDSVLGCV 287

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           L+ ++ KCG ++ A ++F  + ++++ A+  +I+GY  +G   E++S   ++   G +P+
Sbjct: 288 LIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPN 347

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
             TF+ +L   T C S   L      + ++     ++K     Y  +VD   + G    A
Sbjct: 348 VITFTAVL---TAC-SYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEA 403

Query: 206 -RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
            R + +M L+ N +   +++        +E  EEI
Sbjct: 404 KRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEI 438


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  268 bits (684), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 150/466 (32%), Positives = 249/466 (53%), Gaps = 44/466 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++H    + G   +  +   L+ ++ KC   + A  +F+ +P R + ++  M + Y+  G
Sbjct: 99  RVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCG 158

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
            + E+L   RK+  +GERP+  T S IL A T  +         GR VH  +++  +  +
Sbjct: 159 LLREALGAFRKMGLNGERPNSVTVSSILPACTDLKD-----LKSGREVHGFVVRNGMGGN 213

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             + +ALV+ Y        A++VFD M  ++ +    +I+ +      E    +F + + 
Sbjct: 214 VFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMS 273

Query: 246 KDI----VVYNAMIEG----------------------------------YSISIETARK 267
           + +      +NA+I G                                     ++E+ R 
Sbjct: 274 EGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRG 333

Query: 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
             ++H  + ++ FF+D+   +ALV MYAKCG ++ +RRVF  M +++  +W +MI     
Sbjct: 334 GKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSM 393

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           +GN  +AL LF  M +  V+PN VTF G LS C H+ LVD+G  IF+SM RD+S++P  +
Sbjct: 394 HGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDAD 453

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           H++CMVD+L RAG LE+A +F+ +MP +P +  W ALL  CR++ +VE+  IAAN +F++
Sbjct: 454 HHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGCRVYKNVELGRIAANRLFEI 513

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            + D PG YV LSN L +A  W   +E R+ M+ RGV K+ GCSW+
Sbjct: 514 ES-DNPGNYVLLSNILVSAKLWSEASETRKLMRDRGVTKNPGCSWI 558



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 99/414 (23%), Positives = 182/414 (43%), Gaps = 48/414 (11%)

Query: 81  NISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSS 140
           ++++K + ++   G L+ A  +FD++PQ  L  +  +I+   K+G+  E++         
Sbjct: 12  HLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHK 71

Query: 141 G-ERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKG 199
               PD      + KA    R  +   R     VH   ++    +D +L  AL+D Y K 
Sbjct: 72  NCVEPDKLLLLSVAKACASLRDVMNAKR-----VHEDAIRFGFCSDVLLGNALIDMYGKC 126

Query: 200 GKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK---TVEKDIVVYNAMIE 256
             +  AR+VF+ M  ++VI  TSM S +++ G + +A   FRK     E+   V  + I 
Sbjct: 127 RCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSIL 186

Query: 257 GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF 316
                ++  +   EVH  +++N    +V + SALV+MYA C  I  A+ VFD M +++  
Sbjct: 187 PACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTV 246

Query: 317 TWTSMIDGYG-----------------------------------KNGNPNQALELFCMM 341
           +W  +I  Y                                    +NG   +ALE+   M
Sbjct: 247 SWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRM 306

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGS 401
           Q    +PN +T    L AC +   +  G++I   + R +  +  +     +V +  + G 
Sbjct: 307 QNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQ-DLTTTTALVFMYAKCGD 365

Query: 402 LEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA 455
           LE + + V  M  K ++  W  ++ +  +H + E A +   E+  +++  RP +
Sbjct: 366 LELSRR-VFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREM--VDSGVRPNS 416



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 133/302 (44%), Gaps = 47/302 (15%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY-- 121
           G ++H  + + G+  N  +S  L+ ++  C +++ A  +FD + +R   ++N +I  Y  
Sbjct: 198 GREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYFL 257

Query: 122 ---------------------------------LKNGQVEESLSLVRKLVSSGERPDGYT 148
                                            ++NG+ E++L ++ ++ +SG +P+  T
Sbjct: 258 NKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQIT 317

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIV 208
            + +L A T    N+   R  G+ +H  I +     D    TALV  Y K G    +R V
Sbjct: 318 ITSVLPACT----NLESLRG-GKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELSRRV 372

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIET 264
           F MM +++ +   +MI      G  E+A  +FR+ V+  +    V +  ++ G S S   
Sbjct: 373 FSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHS-RL 431

Query: 265 ARKALEVHCQLIKNVFFE-DVKLGSALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMI 322
             + L +   + ++   E D    S +VD+ ++ G++++A      M  +     W +++
Sbjct: 432 VDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALL 491

Query: 323 DG 324
            G
Sbjct: 492 GG 493



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/181 (27%), Positives = 86/181 (47%), Gaps = 21/181 (11%)

Query: 32  KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHL 91
           ++QN     N +T TS+  A     N ++   G +IH +I +     +   +  L+ ++ 
Sbjct: 305 RMQNSGFKPNQITITSVLPACT---NLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYA 361

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           KCG L+ + ++F  + +R   ++N MI     +G  EE+L L R++V SG RP+  TF+ 
Sbjct: 362 KCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTG 421

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCD-------VKADDVLYTALVDSYVKGGKTSY 204
           +L  S C  S         R+V   +L  D       V+ D   ++ +VD   + G+   
Sbjct: 422 VL--SGCSHS---------RLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEE 470

Query: 205 A 205
           A
Sbjct: 471 A 471


>gi|225465296|ref|XP_002268999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g14470-like [Vitis vinifera]
          Length = 729

 Score =  268 bits (684), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 151/426 (35%), Positives = 254/426 (59%), Gaps = 21/426 (4%)

Query: 76  VKPNTNI--SIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL 133
           V P  N+     ++  + K   L+ A + FD +P+R++ ++N M++GY +NG  EE+L L
Sbjct: 188 VMPERNVITWTAMVTGYAKVKDLEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRL 247

Query: 134 VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ--ILKCDVKADDVLYTA 191
             ++V++G  PD  T+  ++ A +  R +  L  +L R +H +   L C V+      TA
Sbjct: 248 FDEMVNAGIEPDETTWVTVISACSS-RGDPCLAASLVRTLHQKRIQLNCFVR------TA 300

Query: 192 LVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVY 251
           L+D Y K G    AR +F+ M  +NV+   SMI+G+   G    A E+F++ +    +  
Sbjct: 301 LLDMYAKFGDLDSARKLFNTMPGRNVVTWNSMIAGYAQNGQSAMAIELFKEMITAKKLTP 360

Query: 252 NAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG----SALVDMYAKCGKIDDARRVF 307
           + +     IS      ALE+   +++ +    +KL     +A++ MY++CG ++DA+RVF
Sbjct: 361 DEVTMVSVISACGHLGALELGNWVVRFLTENQIKLSISGHNAMIFMYSRCGSMEDAKRVF 420

Query: 308 DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367
             M  ++V ++ ++I G+  +G+  +A+ L   M+E  ++P+ VTF+G L+AC HAGL++
Sbjct: 421 QEMATRDVVSYNTLISGFAAHGHGVEAINLMSTMKEGGIEPDRVTFIGVLTACSHAGLLE 480

Query: 368 KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
           +GR++FES++      P ++HYACMVDLLGR G LE A + +  MP +P++ V+ +LL++
Sbjct: 481 EGRKVFESIK-----DPAIDHYACMVDLLGRVGELEDAKRTMERMPMEPHAGVYGSLLNA 535

Query: 428 CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487
            R+H  VE+  +AAN++F+L   D  G ++ LSN  A+AG+W  V  +RE MK  GV K 
Sbjct: 536 SRIHKQVELGELAANKLFELEP-DNSGNFILLSNIYASAGRWKDVERIREAMKKGGVKKT 594

Query: 488 TGCSWV 493
           TG SWV
Sbjct: 595 TGWSWV 600



 Score = 98.2 bits (243), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 81/367 (22%), Positives = 156/367 (42%), Gaps = 57/367 (15%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALK----YAGQMFDELPQRTLSAYNYMIAGY 121
           ++HA I    +  + N  + LLI H  C  L+    Y   +F+      +  +  M+  Y
Sbjct: 19  QLHAQIIHNSLHHH-NYWVALLINH--CTRLRAPPHYTHLLFNSTLNPNVFVFTSMLRFY 75

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
                  + + +  ++   G RPD + + +++K++             G   HA +LK  
Sbjct: 76  SHLQDHAKVVLMYEQMQGCGVRPDAFVYPILIKSAGTG----------GIGFHAHVLKLG 125

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMM--LEKNVICSTSMISGFMSQGFVEDAEEI 239
             +D  +  A++D Y + G   +AR VFD +   E+ V    +M+SG+        A+ +
Sbjct: 126 HGSDAFVRNAVIDMYARLGPIGHARKVFDEIPDYERKVADWNAMVSGYWKWESEGQAQWL 185

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           F    E++++ + AM+ GY                                    AK   
Sbjct: 186 FDVMPERNVITWTAMVTGY------------------------------------AKVKD 209

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ++ ARR FD M +++V +W +M+ GY +NG   +AL LF  M    ++P+  T++  +SA
Sbjct: 210 LEAARRYFDCMPERSVVSWNAMLSGYAQNGLAEEALRLFDEMVNAGIEPDETTWVTVISA 269

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C   G       +  ++ +   ++        ++D+  + G L+ A K    MP + N  
Sbjct: 270 CSSRGDPCLAASLVRTLHQK-RIQLNCFVRTALLDMYAKFGDLDSARKLFNTMPGR-NVV 327

Query: 420 VWAALLS 426
            W ++++
Sbjct: 328 TWNSMIA 334



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 52/249 (20%), Positives = 107/249 (42%), Gaps = 49/249 (19%)

Query: 71  ITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEES 130
           +T+  +K + +    ++ ++ +CG+++ A ++F E+  R + +YN +I+G+  +G   E+
Sbjct: 388 LTENQIKLSISGHNAMIFMYSRCGSMEDAKRVFQEMATRDVVSYNTLISGFAAHGHGVEA 447

Query: 131 LSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT 190
           ++L+  +   G  PD  TF  +L A +                HA +L+   K  + +  
Sbjct: 448 INLMSTMKEGGIEPDRVTFIGVLTACS----------------HAGLLEEGRKVFESIKD 491

Query: 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV 250
             +D Y                          M+      G +EDA    ++T+E+  + 
Sbjct: 492 PAIDHY------------------------ACMVDLLGRVGELEDA----KRTMERMPME 523

Query: 251 YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSA----LVDMYAKCGKIDDARRV 306
            +A + G  ++     K +E+  +L  N  FE     S     L ++YA  G+  D  R+
Sbjct: 524 PHAGVYGSLLNASRIHKQVEL-GELAANKLFELEPDNSGNFILLSNIYASAGRWKDVERI 582

Query: 307 FDHMQQKNV 315
            + M++  V
Sbjct: 583 REAMKKGGV 591


>gi|356529928|ref|XP_003533538.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 690

 Score =  268 bits (684), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 139/436 (31%), Positives = 251/436 (57%), Gaps = 19/436 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++  ++  +G +P+  +  ++L +H+KCG +  A ++FDE+P++ ++++  MI G++ +G
Sbjct: 138 RVFNYMVNSGFEPDLYVMNRVLFVHVKCGLMLDARKLFDEMPEKDMASWMTMIGGFVDSG 197

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              E+  L   +          TF+ +++AS    + + L + +GR +H+  LK  V  D
Sbjct: 198 NFSEAFGLFLCMWEEFNDGRSRTFTTMIRAS----AGLGLVQ-VGRQIHSCALKRGVGDD 252

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             +  AL+D Y K G    A  VFD M EK  +   S+I+ +   G+ E+A   + +  +
Sbjct: 253 TFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSFYYEMRD 312

Query: 246 KDIVVYNAMIEGYSISI--------ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
                  A I+ ++ISI         +   A + H  L++  +  D+   +ALVD Y+K 
Sbjct: 313 S-----GAKIDHFTISIVIRICARLASLEYAKQAHAALVRRGYDTDIVANTALVDFYSKW 367

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G+++DA  VF+ M++KNV +W ++I GYG +G   +A+E+F  M    + PN+VTFL  L
Sbjct: 368 GRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQMLREGMIPNHVTFLAVL 427

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           SAC ++GL ++G EIF SM RD+ +KP+  HYACMV+LLGR G L++A + +   P KP 
Sbjct: 428 SACSYSGLSERGWEIFYSMSRDHKVKPRAMHYACMVELLGREGLLDEAYELIRSAPFKPT 487

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
           +++WA LL++CR+H+++E+  +AA  ++ +   ++   Y+ L N   ++GK      + +
Sbjct: 488 TNMWATLLTACRMHENLELGKLAAENLYGMEP-EKLCNYIVLLNLYNSSGKLKEAAGVLQ 546

Query: 478 KMKLRGVLKDTGCSWV 493
            +K +G+     C+W+
Sbjct: 547 TLKRKGLRMLPACTWI 562



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 89/347 (25%), Positives = 166/347 (47%), Gaps = 47/347 (13%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH+   K GV  +T +S  L+ ++ KCG+++ A  +FD++P++T   +N +IA Y  
Sbjct: 237 GRQIHSCALKRGVGDDTFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYAL 296

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G  EE+LS   ++  SG + D +T S++++   C R          +  HA +++    
Sbjct: 297 HGYSEEALSFYYEMRDSGAKIDHFTISIVIR--ICAR---LASLEYAKQAHAALVRRGYD 351

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D V  TALVD Y K G+   A  VF+ M  KNVI   ++I+G+ + G  E+A E+F + 
Sbjct: 352 TDIVANTALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYGNHGQGEEAVEMFEQM 411

Query: 244 VEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           + + +    V + A++   S S  + R            +F+   +              
Sbjct: 412 LREGMIPNHVTFLAVLSACSYSGLSERGW---------EIFYSMSR-------------- 448

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
                   DH  +     +  M++  G+ G  ++A EL   ++    +P    +   L+A
Sbjct: 449 --------DHKVKPRAMHYACMVELLGREGLLDEAYEL---IRSAPFKPTTNMWATLLTA 497

Query: 360 CGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQA 405
           C     ++ G+   E++   Y M+P K+ +Y  +++L   +G L++A
Sbjct: 498 CRMHENLELGKLAAENL---YGMEPEKLCNYIVLLNLYNSSGKLKEA 541



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 96/189 (50%), Gaps = 5/189 (2%)

Query: 250 VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309
            Y+A++    + + + R    V   ++ + F  D+ + + ++ ++ KCG + DAR++FD 
Sbjct: 119 TYDALVSA-CVGLRSIRGVKRVFNYMVNSGFEPDLYVMNRVLFVHVKCGLMLDARKLFDE 177

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKG 369
           M +K++ +W +MI G+  +GN ++A  LF  M E        TF   + A    GLV  G
Sbjct: 178 MPEKDMASWMTMIGGFVDSGNFSEAFGLFLCMWEEFNDGRSRTFTTMIRASAGLGLVQVG 237

Query: 370 REIFE-SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
           R+I   +++R       +     ++D+  + GS+E A     +MPEK     W ++++S 
Sbjct: 238 RQIHSCALKRGVGDDTFVS--CALIDMYSKCGSIEDAHCVFDQMPEKTTVG-WNSIIASY 294

Query: 429 RLHDDVEMA 437
            LH   E A
Sbjct: 295 ALHGYSEEA 303



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/95 (25%), Positives = 52/95 (54%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           Y  + HA + + G   +   +  L+  + K G ++ A  +F+ + ++ + ++N +IAGY 
Sbjct: 337 YAKQAHAALVRRGYDTDIVANTALVDFYSKWGRMEDAWHVFNRMRRKNVISWNALIAGYG 396

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
            +GQ EE++ +  +++  G  P+  TF  +L A +
Sbjct: 397 NHGQGEEAVEMFEQMLREGMIPNHVTFLAVLSACS 431


>gi|356502620|ref|XP_003520116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Glycine max]
          Length = 785

 Score =  268 bits (684), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 159/496 (32%), Positives = 265/496 (53%), Gaps = 69/496 (13%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G K+H+ + K G      ++  LL ++ KCG    A  +FD +  +  S +N MI+ +++
Sbjct: 164 GKKVHSFVVKLGQSGVVPVANSLLNMYAKCGDSVMAKVVFDRMRLKDTSTWNTMISMHMQ 223

Query: 124 NGQVEESLSLVRKL----------VSSGERPDGY------TFSMILKAST---------- 157
             Q + +L+L  ++          + +G    GY      TFS +LK+S+          
Sbjct: 224 FCQFDLALALFDQMTDPDIVSWNSIITGYCHQGYDIRALETFSFMLKSSSLKPDKFTLGS 283

Query: 158 ---CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE 214
               C +   L   LG+ +HA I++ DV     +  AL+  Y K G    A  + ++   
Sbjct: 284 VLSACANRESL--KLGKQIHAHIVRADVDIAGAVGNALISMYAKSGAVEVAHRIVEITGT 341

Query: 215 K--NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS------------- 259
              NVI  TS++ G+   G ++ A  IF     +D+V + AMI GY+             
Sbjct: 342 PSLNVIAFTSLLDGYFKIGDIDPARAIFDSLKHRDVVAWTAMIVGYAQNGLISDALVLFR 401

Query: 260 -----------------ISIETARKAL----EVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
                            +S+ ++  +L    ++H   I+      V +G+AL+ MY++ G
Sbjct: 402 LMIREGPKPNNYTLAAVLSVISSLASLDHGKQLHAVAIRLEEVSSVSVGNALITMYSRSG 461

Query: 299 KIDDARRVFDHM-QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
            I DAR++F+H+   ++  TWTSMI    ++G  N+A+ELF  M    ++P+++T++G L
Sbjct: 462 SIKDARKIFNHICSYRDTLTWTSMILSLAQHGLGNEAIELFEKMLRINLKPDHITYVGVL 521

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           SAC H GLV++G+  F  M+  ++++P   HYACM+DLLGRAG LE+A  F+  MP +P+
Sbjct: 522 SACTHVGLVEQGKSYFNLMKNVHNIEPTSSHYACMIDLLGRAGLLEEAYNFIRNMPIEPD 581

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
              W +LLSSCR+H  V++A +AA ++  ++ N+  GAY+AL+NTL+A GKW+   ++R+
Sbjct: 582 VVAWGSLLSSCRVHKYVDLAKVAAEKLLLIDPNN-SGAYLALANTLSACGKWEDAAKVRK 640

Query: 478 KMKLRGVLKDTGCSWV 493
            MK + V K+ G SWV
Sbjct: 641 SMKDKAVKKEQGFSWV 656



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 117/486 (24%), Positives = 203/486 (41%), Gaps = 118/486 (24%)

Query: 52  LQHYINSDTPFYGLKIHAHITKTGVK------PNT--NISIK------------------ 85
           LQ  I S  PF G  IHA I K G++       N   N+ +K                  
Sbjct: 19  LQSAIKSRDPFIGRCIHARIIKHGLRYLGVFLTNNLLNLYVKTGSSSDAHRLFDEMPLKT 78

Query: 86  ------LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVS 139
                 +L  H K G L  A ++FDE+PQ    ++  MI GY   G  + ++    ++VS
Sbjct: 79  TFSWNTILSAHAKAGNLDSARRVFDEIPQPDSVSWTTMIVGYNHLGLFKSAVHAFLRMVS 138

Query: 140 SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKG 199
           SG  P  +TF+ +L +    ++      ++G+ VH+ ++K        +  +L++ Y K 
Sbjct: 139 SGISPTQFTFTNVLASCAAAQA-----LDVGKKVHSFVVKLGQSGVVPVANSLLNMYAKC 193

Query: 200 GKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS 259
           G +  A++VFD M  K+     +MIS  M     + A  +F +  + DIV +N++I GY 
Sbjct: 194 GDSVMAKVVFDRMRLKDTSTWNTMISMHMQFCQFDLALALFDQMTDPDIVSWNSIITGYC 253

Query: 260 -------------------------------ISIETARKALEVHCQLIKNVFFEDVKL-- 286
                                          +S    R++L++  Q+  ++   DV +  
Sbjct: 254 HQGYDIRALETFSFMLKSSSLKPDKFTLGSVLSACANRESLKLGKQIHAHIVRADVDIAG 313

Query: 287 --GSALVDMYA---------------------------------KCGKIDDARRVFDHMQ 311
             G+AL+ MYA                                 K G ID AR +FD ++
Sbjct: 314 AVGNALISMYAKSGAVEVAHRIVEITGTPSLNVIAFTSLLDGYFKIGDIDPARAIFDSLK 373

Query: 312 QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371
            ++V  WT+MI GY +NG  + AL LF +M     +PN  T    LS       +D G++
Sbjct: 374 HRDVVAWTAMIVGYAQNGLISDALVLFRLMIREGPKPNNYTLAAVLSVISSLASLDHGKQ 433

Query: 372 IFESMERDYSMKPKMEHYA------CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
           +       +++  ++E  +       ++ +  R+GS++ A K    +    ++  W +++
Sbjct: 434 L-------HAVAIRLEEVSSVSVGNALITMYSRSGSIKDARKIFNHICSYRDTLTWTSMI 486

Query: 426 SSCRLH 431
            S   H
Sbjct: 487 LSLAQH 492


>gi|345505214|gb|AEN99831.1| chlororespiratory reduction 4 [Brassica rapa]
          Length = 612

 Score =  268 bits (684), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 150/472 (31%), Positives = 241/472 (51%), Gaps = 60/472 (12%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H  + KTG   +  +   L+ L++KCG L +A Q+FD +PQR   +YN MI GYLK
Sbjct: 147 GTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGCLGFARQVFDRMPQRDSVSYNSMIDGYLK 206

Query: 124 NGQVEESLSLV-------RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
            G VE +  L        R L++      GY                   R  G  V A+
Sbjct: 207 CGLVESAGELFGLMPREKRNLITWNSMIGGYA-----------------QRADGVNVAAK 249

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
           +     + D + + +++  YVK G+   A+ +FD+M  ++V+    MI G+   G V +A
Sbjct: 250 LFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHEA 309

Query: 237 EEIFRKTVEKDIVVYNAMIEG---------------------------------YSISIE 263
           + +F +   +D+VVYN+M+ G                                  S   +
Sbjct: 310 KTLFDQMPHRDVVVYNSMMSGXVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAXAQ 369

Query: 264 TAR--KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
             R  KA+++H  +++  F    KLG AL+DMY+KCG I  A RVF+ ++ K++  W +M
Sbjct: 370 LGRLSKAIDMHLYIVEKQFPSSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAM 429

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           I G   +G    A ++   ++   ++P+++TF+G L+AC H+GLV +G   FE M R + 
Sbjct: 430 IGGLAVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHK 489

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441
           ++P+++HY CMVD+L R+GS+E A   +  MP +PN  +W   L++C  H + E   + A
Sbjct: 490 IEPRLQHYGCMVDILARSGSIELAKNLIEGMPIEPNDVIWRTFLTACSHHKEFETGELVA 549

Query: 442 NEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             +  L A   P +YV LSN  A+ G W  V  +R  MK + + K  GCSW+
Sbjct: 550 KHLI-LQAGYNPSSYVLLSNMYASNGMWKDVRRVRTMMKEKNIEKIPGCSWI 600



 Score =  120 bits (300), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 188/419 (44%), Gaps = 57/419 (13%)

Query: 114 YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMV 173
           +N +I  +       ++L L+  ++ +G   D ++FS+ LKA  C R         G  V
Sbjct: 96  WNVVIKSHSHGVDPRKALFLLCLMLENGVPVDKFSFSLALKA--CSRLGFV---KEGTQV 150

Query: 174 HAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFV 233
           H  ++K    +D  L   L+  Y+K G   +AR VFD M +++ +   SMI G++  G V
Sbjct: 151 HGFLIKTGTWSDLFLQNCLIGLYIKCGCLGFARQVFDRMPQRDSVSYNSMIDGYLKCGLV 210

Query: 234 EDAEEIF--RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALV 291
           E A E+F      +++++ +N+MI GY+   +     + V  +L   +  +D+   ++++
Sbjct: 211 ESAGELFGLMPREKRNLITWNSMIGGYAQRAD----GVNVAAKLFDEMPEKDLISWNSMI 266

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM---------- 341
             Y K G+I+DA+ +FD M +++V TW  MIDGYGK G  ++A  LF  M          
Sbjct: 267 GGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHEAKTLFDQMPHRDVVVYNS 326

Query: 342 ----------------------QECCVQPNYVTFLGALSACGHAGLVDKGREI-FESMER 378
                                 +E  + P+  + +  LSA    G + K  ++    +E+
Sbjct: 327 MMSGXVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAXAQLGRLSKAIDMHLYIVEK 386

Query: 379 DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMAN 438
            +    K+     ++D+  + GS++ A++ V E  E  + D W A++    +H    +  
Sbjct: 387 QFPSSGKLG--VALIDMYSKCGSIQHAMR-VFEGIESKSIDHWNAMIGGLAVHG---LGE 440

Query: 439 IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE-------LREKMKLRGVLKDTGC 490
            A + + ++        ++     L A      V E       +R K K+   L+  GC
Sbjct: 441 SAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGC 499



 Score = 41.6 bits (96), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 55/122 (45%), Gaps = 3/122 (2%)

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           +A+C  +     V    + ++ F W  +I  +    +P +AL L C+M E  V  +  +F
Sbjct: 74  FARC--VFHEHHVSSSGEVEDPFLWNVVIKSHSHGVDPRKALFLLCLMLENGVPVDKFSF 131

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
             AL AC   G V +G ++   + +  +    +    C++ L  + G L  A +    MP
Sbjct: 132 SLALKACSRLGFVKEGTQVHGFLIKTGTWS-DLFLQNCLIGLYIKCGCLGFARQVFDRMP 190

Query: 414 EK 415
           ++
Sbjct: 191 QR 192


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  268 bits (684), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 150/431 (34%), Positives = 241/431 (55%), Gaps = 11/431 (2%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           IH    KT      ++   LL ++ KCG +K A   F+ +P   +   ++MI+ Y ++ Q
Sbjct: 266 IHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQ 325

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
            E++  L  +L+ S   P+ Y+ S +L+A   C + V L  + G+ +H   +K   ++D 
Sbjct: 326 NEQAFELFLRLMRSSVLPNEYSLSSVLQA---CTNMVQL--DFGKQIHNHAIKIGHESDL 380

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
            +  AL+D Y K      +  +F  + + N +   +++ GF   G  E+A  +F +    
Sbjct: 381 FVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAA 440

Query: 247 DI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
            +    V Y++++   + S  + R A ++HC + K+ F  D  +G++L+D YAKCG I D
Sbjct: 441 QMPCTQVTYSSVLRACA-STASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRD 499

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           A +VF H+ ++++ +W ++I GY  +G    ALELF  M +  V+ N +TF+  LS C  
Sbjct: 500 ALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALLSVCCS 559

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
            GLV+ G  +F+SM  D+ +KP MEHY C+V LLGRAG L  AL+F+ ++P  P++ VW 
Sbjct: 560 TGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIGDIPSAPSAMVWR 619

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
           ALLSSC +H +V +   +A +I ++   D    YV LSN  AAAG  D V  LR+ M+  
Sbjct: 620 ALLSSCIIHKNVALGRFSAEKILEIEPQDET-TYVLLSNMYAAAGSLDQVALLRKSMRNI 678

Query: 483 GVLKDTGCSWV 493
           GV K  G SWV
Sbjct: 679 GVRKVPGLSWV 689



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 93/382 (24%), Positives = 157/382 (41%), Gaps = 69/382 (18%)

Query: 22  LVPPNQTFPPKLQNYDSLSNPLTATS-LPSA-----------LQHYINSDTPFYGLKIHA 69
           + P  + F         L + LT+ + LPS            LQ  I       G  +H 
Sbjct: 24  VAPQRRGFAAYAAALQWLEDELTSLAILPSVPGVDSFACARQLQGCIARGDARGGRAVHG 83

Query: 70  HITKTGVKPNTNISIKLLILHL--KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV 127
           H+ + G     ++    ++L++  K G L  A ++FD +P+R + ++  ++  + + G  
Sbjct: 84  HVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDF 143

Query: 128 EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV 187
           E + +L R+L   G   + +  + +LK                                 
Sbjct: 144 EAAAALFRRLRWEGHEVNQFVLTTMLK--------------------------------- 170

Query: 188 LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKD 247
           L  A+  + + GG  S A   + +  + N    + +I  +     V DAE +F   V KD
Sbjct: 171 LAIAMDAAGLAGGVHSCA---WKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKD 227

Query: 248 IVVYNAMIEGYS-----------------ISIETARKALEVHCQLIKNVFFEDVKLGSAL 290
            VV+ AM+  YS                 ++I  AR+   +H   IK +   +  +G AL
Sbjct: 228 AVVWTAMVSCYSENDCPENAFRCAQSCSLLAISCARQG--IHGCAIKTLNDTEPHVGGAL 285

Query: 291 VDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY 350
           +DMYAKCG I DAR  F+ +   +V   + MI  Y ++    QA ELF  +    V PN 
Sbjct: 286 LDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNE 345

Query: 351 VTFLGALSACGHAGLVDKGREI 372
            +    L AC +   +D G++I
Sbjct: 346 YSLSSVLQACTNMVQLDFGKQI 367



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 90/363 (24%), Positives = 166/363 (45%), Gaps = 47/363 (12%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           SL S LQ   N     +G +IH H  K G + +  +   L+  + KC  +  + ++F  L
Sbjct: 347 SLSSVLQACTNMVQLDFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSL 406

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
                 ++N ++ G+ ++G  EE+LS+  ++ ++       T+S +L+A   C S   + 
Sbjct: 407 RDANEVSWNTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRA---CASTASI- 462

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
           R+ G+ +H  I K     D V+  +L+D+Y K G    A  VF  ++E+++I   ++ISG
Sbjct: 463 RHAGQ-IHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISG 521

Query: 227 FMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
           +   G   DA E+F    +  VE + + + A++   S+   T                  
Sbjct: 522 YALHGQAADALELFDRMNKSNVESNDITFVALL---SVCCSTGL---------------- 562

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
            V  G +L           D+ R+ DH  + ++  +T ++   G+ G  N AL+    + 
Sbjct: 563 -VNHGLSLF----------DSMRI-DHGIKPSMEHYTCIVRLLGRAGRLNDALQF---IG 607

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME-HYACMVDLLGRAGS 401
           +    P+ + +   LS+C     V  GR    S E+   ++P+ E  Y  + ++   AGS
Sbjct: 608 DIPSAPSAMVWRALLSSCIIHKNVALGR---FSAEKILEIEPQDETTYVLLSNMYAAAGS 664

Query: 402 LEQ 404
           L+Q
Sbjct: 665 LDQ 667



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 63/122 (51%), Gaps = 2/122 (1%)

Query: 42  PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQ 101
           P T  +  S L+   ++ +  +  +IH  I K+    +T I   L+  + KCG ++ A +
Sbjct: 443 PCTQVTYSSVLRACASTASIRHAGQIHCSIEKSTFNNDTVIGNSLIDTYAKCGYIRDALK 502

Query: 102 MFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161
           +F  L +R + ++N +I+GY  +GQ  ++L L  ++  S    +  TF  +L  S CC +
Sbjct: 503 VFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFVALL--SVCCST 560

Query: 162 NV 163
            +
Sbjct: 561 GL 562


>gi|147765322|emb|CAN64903.1| hypothetical protein VITISV_019802 [Vitis vinifera]
          Length = 625

 Score =  268 bits (684), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 154/445 (34%), Positives = 251/445 (56%), Gaps = 19/445 (4%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           F G  IH    +TG   +T ++  ++ ++ KCG    + ++FDE+  R   ++N +IAGY
Sbjct: 141 FSGKSIHGKSIRTGFVSDTVVANSIMSMYCKCGNFDESRKVFDEMTIRNSGSWNVLIAGY 200

Query: 122 LKNGQV---EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
             +G     EE+   V+++     RPD YT S +L     C  ++    + GR +H  I+
Sbjct: 201 AVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPL---CDGDMG-KWDYGRELHCYIV 256

Query: 179 KCDV----KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVE 234
           K ++     +D  L   L+D Y +  K    R VFD M  +NV   T+MI+G++  G  +
Sbjct: 257 KNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSD 316

Query: 235 DAEEIFRKT-----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSA 289
           +A  +FR       VE + V   +++   S S        ++H   ++     +V L +A
Sbjct: 317 EALSLFRDMQVIDGVEPNRVSLVSVLPACS-SFSGLLSGRQIHGFAVRKELNNEVSLCNA 375

Query: 290 LVDMYAKCGKIDDARRVF-DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348
           L+DMY+KCG +D ARRVF D    K+  +W+SMI GYG +G   +A+ L+  M +  ++P
Sbjct: 376 LIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRP 435

Query: 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKF 408
           + +T +G LSACG +GLV++G  I+ S+  DY ++P +E  AC+VD+LGRAG L++AL F
Sbjct: 436 DMITTVGILSACGRSGLVNEGLNIYSSVINDYGIEPTLEICACIVDMLGRAGQLDRALDF 495

Query: 409 VLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGK 468
           +  +P +P   VW AL+S   +H D+EM  +A   + +L   + P  YV++SN  A++ +
Sbjct: 496 IKAIPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEPKN-PSNYVSISNLYASSRR 554

Query: 469 WDSVTELREKMKLRGVLKDTGCSWV 493
           WD+V E+R  MK + + K  GCSW+
Sbjct: 555 WDAVAEVRRMMKDKRLRKVPGCSWI 579



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 125/472 (26%), Positives = 218/472 (46%), Gaps = 39/472 (8%)

Query: 20  YTLVPPNQ-----TFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKT 74
           +TL+P         F P L    SL   +T  SL    Q              H+ I   
Sbjct: 6   FTLIPSRYYASAFEFDPSLALLQSLHFSVTHKSLKLTRQS-------------HSRILSL 52

Query: 75  GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV 134
           G+  N+ ++ KL+  +  C    ++  +FD L  + +  +N +I G +KN    E+  L 
Sbjct: 53  GLSQNSFLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGCVKNRLYNEAFQLF 112

Query: 135 RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVD 194
            ++ SS   PD +T S + K S+   +        G+ +H + ++    +D V+  +++ 
Sbjct: 113 NQMCSSDVLPDDFTLSTLSKVSSELGALFS-----GKSIHGKSIRTGFVSDTVVANSIMS 167

Query: 195 SYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG---FVEDAEEIFRKT----VEKD 247
            Y K G    +R VFD M  +N      +I+G+   G   F E+  E  ++     V  D
Sbjct: 168 MYCKCGNFDESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWEFVKQMQMDEVRPD 227

Query: 248 IVVYNAMIEGYSISIETARKALEVHCQLIKNVFF----EDVKLGSALVDMYAKCGKIDDA 303
               ++++      +       E+HC ++KN        DV LG  L+DMY++  K+   
Sbjct: 228 AYTISSLLPLCDGDMGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVG 287

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC-CVQPNYVTFLGALSACGH 362
           RRVFD M+ +NVF+WT+MI+GY +NG+ ++AL LF  MQ    V+PN V+ +  L AC  
Sbjct: 288 RRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGVEPNRVSLVSVLPACSS 347

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
              +  GR+I     R   +  ++     ++D+  + GSL+ A +   +     ++  W+
Sbjct: 348 FSGLLSGRQIHGFAVRK-ELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWS 406

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
           +++S   LH   + A +  +++  L A  RP   +     L+A G+   V E
Sbjct: 407 SMISGYGLHGKGQEAILLYDKM--LQAGIRPDM-ITTVGILSACGRSGLVNE 455



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 8/223 (3%)

Query: 258 YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT 317
           +S++ ++ +   + H +++     ++  L + L+  YA C     +R VFD +Q KNVF 
Sbjct: 32  FSVTHKSLKLTRQSHSRILSLGLSQNSFLATKLIFAYAICQHPYHSRLVFDSLQHKNVFL 91

Query: 318 WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377
           W S+I+G  KN   N+A +LF  M    V P+  T           G +  G+ I     
Sbjct: 92  WNSLINGCVKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSI 151

Query: 378 RDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           R   +   +   + M  +  + G+ +++ K   EM  + NS  W  L++   +  +    
Sbjct: 152 RTGFVSDTVVANSIM-SMYCKCGNFDESRKVFDEMTIR-NSGSWNVLIAGYAVSGNCNFR 209

Query: 438 NIAANEIFKLNAND-RPGAYVALSNTL----AAAGKWDSVTEL 475
                 + ++  ++ RP AY  +S+ L       GKWD   EL
Sbjct: 210 EETWEFVKQMQMDEVRPDAY-TISSLLPLCDGDMGKWDYGREL 251


>gi|334184919|ref|NP_182060.2| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
 gi|218546767|sp|O22137.2|PP202_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g45350, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 4; Flags: Precursor
 gi|330255448|gb|AEC10542.1| chlororespiratory reduction 4 protein [Arabidopsis thaliana]
          Length = 613

 Score =  268 bits (684), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 150/473 (31%), Positives = 244/473 (51%), Gaps = 62/473 (13%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH  + KTG+  +  +   L+ L+LKCG L  + QMFD +P+R   +YN MI GY+K
Sbjct: 140 GMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVK 199

Query: 124 NGQVEESLSL-------VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
            G +  +  L       ++ L+S      GY       A T    ++           A 
Sbjct: 200 CGLIVSARELFDLMPMEMKNLISWNSMISGY-------AQTSDGVDI-----------AS 241

Query: 177 ILKCDVKADDVL-YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
            L  D+   D++ + +++D YVK G+   A+ +FD+M  ++V+   +MI G+   GFV  
Sbjct: 242 KLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHH 301

Query: 236 AEEIFRKTVEKDIVVYNAMIEGYS-----------------------------------I 260
           A+ +F +   +D+V YN+M+ GY                                     
Sbjct: 302 AKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIA 361

Query: 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
            +    KA+++H  +++  F+   KLG AL+DMY+KCG I  A  VF+ ++ K++  W +
Sbjct: 362 QLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNA 421

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
           MI G   +G    A ++   ++   ++P+ +TF+G L+AC H+GLV +G   FE M R +
Sbjct: 422 MIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKH 481

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIA 440
            ++P+++HY CMVD+L R+GS+E A   + EMP +PN  +W   L++C  H + E   + 
Sbjct: 482 KIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELV 541

Query: 441 ANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           A  +  L A   P +YV LSN  A+ G W  V  +R  MK R + K  GCSW+
Sbjct: 542 AKHLI-LQAGYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWI 593



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 125/482 (25%), Positives = 218/482 (45%), Gaps = 76/482 (15%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCG---ALKYAGQMFDELPQRTLS--------AY 114
           +IH  + KTG+  N+N++ ++++            +A  +F E    + S         +
Sbjct: 30  QIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEYHVCSFSFGEVEDPFLW 89

Query: 115 NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH 174
           N +I  +       ++L L+  ++ +G   D ++ S++LKA  C R         G  +H
Sbjct: 90  NAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKA--CSRLGFV---KGGMQIH 144

Query: 175 AQI-------------------LKCDV------------KADDVLYTALVDSYVKGGKTS 203
             +                   LKC              K D V Y +++D YVK G   
Sbjct: 145 GFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIV 204

Query: 204 YARIVFDMM-LE-KNVICSTSMISGF--MSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY- 258
            AR +FD+M +E KN+I   SMISG+   S G V+ A ++F    EKD++ +N+MI+GY 
Sbjct: 205 SARELFDLMPMEMKNLISWNSMISGYAQTSDG-VDIASKLFADMPEKDLISWNSMIDGYV 263

Query: 259 -SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT 317
               IE A+   +V  +        DV   + ++D YAK G +  A+ +FD M  ++V  
Sbjct: 264 KHGRIEDAKGLFDVMPR-------RDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVA 316

Query: 318 WTSMIDGYGKNGNPNQALELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREI-FES 375
           + SM+ GY +N    +ALE+F  M +E  + P+  T +  L A    G + K  ++    
Sbjct: 317 YNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYI 376

Query: 376 MERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVE 435
           +E+ + +  K+     ++D+  + GS++ A+  V E  E  + D W A++    +H   E
Sbjct: 377 VEKQFYLGGKLG--VALIDMYSKCGSIQHAM-LVFEGIENKSIDHWNAMIGGLAIHGLGE 433

Query: 436 MANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE-------LREKMKLRGVLKDT 488
            A     +I +L+       +V + N  + +G    V E       +R K K+   L+  
Sbjct: 434 SAFDMLLQIERLSLKPDDITFVGVLNACSHSGL---VKEGLLCFELMRRKHKIEPRLQHY 490

Query: 489 GC 490
           GC
Sbjct: 491 GC 492


>gi|147790932|emb|CAN77232.1| hypothetical protein VITISV_001089 [Vitis vinifera]
          Length = 575

 Score =  268 bits (684), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 153/432 (35%), Positives = 231/432 (53%), Gaps = 44/432 (10%)

Query: 94  GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
           G L Y+  +F      ++  +  +I G+   G  E++L+   ++++ G  P+ +TFS IL
Sbjct: 23  GRLDYSVALFGRTQNPSVFFWTAIIHGHALRGLHEQALNFYAQMLTQGVEPNAFTFSSIL 82

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
           K           P   G+ +H+Q +K    +D  + T L+D Y +GG    A+ +FD M 
Sbjct: 83  KLC---------PIEPGKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMP 133

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS-------------- 259
           EK+++  T+M++ +   G ++ A  +F    E+D V +N MI+GY+              
Sbjct: 134 EKSLVSLTAMLTCYAKHGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRR 193

Query: 260 -------------ISIETA---RKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
                        +S+ +A     ALE    VH  +  N    +V +G+ALVDMY+KCG 
Sbjct: 194 MLKAKAKPNEVTVLSVLSACGQLGALESGRWVHSYIENNGIQFNVHVGTALVDMYSKCGS 253

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ++DAR VFD +  K+V  W SMI GY   G   +AL+LF  M    + P  +TF+G LSA
Sbjct: 254 LEDARLVFDKIDDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIGILSA 313

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           CGH+G V +G +IF  M+ +Y ++PK+EHY CMV+LLGRAG +EQA + V  M  +P+  
Sbjct: 314 CGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGRAGHVEQAYELVKNMNIEPDPV 373

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +W  LL +CRLH  + +       +   N  +  G Y+ LSN  AA G WD V  LR  M
Sbjct: 374 LWGTLLGACRLHGKIALGEKIVELLVDQNLAN-SGTYILLSNIYAAVGNWDGVARLRTMM 432

Query: 480 KLRGVLKDTGCS 491
           K  GV K+ GCS
Sbjct: 433 KDSGVKKEPGCS 444



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 141/347 (40%), Gaps = 76/347 (21%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSA---------- 113
           G  +H+   K G   +  +   LL ++ + G +  A Q+FD +P+++L +          
Sbjct: 90  GKALHSQAVKLGFDSDLYVRTGLLDVYARGGDVVSAQQLFDTMPEKSLVSLTAMLTCYAK 149

Query: 114 ---------------------YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
                                +N MI GY +NG   E+L L R+++ +  +P+  T   +
Sbjct: 150 HGELDAARVLFDGMEERDGVCWNVMIDGYTQNGMPNEALVLFRRMLKAKAKPNEVTVLSV 209

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L A   C     L    GR VH+ I    ++ +  + TALVD Y K G    AR+VFD +
Sbjct: 210 LSA---CGQLGALES--GRWVHSYIENNGIQFNVHVGTALVDMYSKCGSLEDARLVFDKI 264

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVH 272
            +K+V+   SMI G+   GF ++A ++F+      +   N    G               
Sbjct: 265 DDKDVVAWNSMIVGYAMXGFSQEALQLFKSMCRMGLHPTNITFIG--------------- 309

Query: 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ-----QKNVFTWTSMIDGYGK 327
                            ++      G + +   +F+ M+     +  +  +  M++  G+
Sbjct: 310 -----------------ILSACGHSGWVTEGWDIFNKMKDEYGIEPKIEHYGCMVNLLGR 352

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374
            G+  QA EL   M    ++P+ V +   L AC   G +  G +I E
Sbjct: 353 AGHVEQAYELVKNMN---IEPDPVLWGTLLGACRLHGKIALGEKIVE 396


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  268 bits (684), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 152/485 (31%), Positives = 253/485 (52%), Gaps = 58/485 (11%)

Query: 66   KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
            +IH ++ + G+  + ++   L+ ++ K G L+ A ++FD +  R  S++N MI+ Y   G
Sbjct: 796  QIHGYVFRFGLDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALG 855

Query: 126  QVEESLSLVRKLVSSGERPDGYTFSMIL------------------------KASTCCRS 161
             + ++ SL  +L SS  +PD  T++ +L                        K ++   +
Sbjct: 856  FLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMT 915

Query: 162  NVPLP------RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
            +V          N+G+  H  +L+     D  + T+L+D YVK      A+ VFD M  +
Sbjct: 916  SVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNR 975

Query: 216  NVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSI----------- 260
            N+    S++SG+  +G  EDA  +     ++ ++ D+V +N MI GY++           
Sbjct: 976  NIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPN 1035

Query: 261  ------------SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFD 308
                        S+   +K  E+HC  I+N F EDV + +AL+DMY+K   + +A +VF 
Sbjct: 1036 SASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFR 1095

Query: 309  HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDK 368
             +Q K + +W  MI G+   G   +A+ +F  MQ+  V P+ +TF   LSAC ++GL+ +
Sbjct: 1096 RIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTALLSACKNSGLIGE 1155

Query: 369  GREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
            G + F+SM  DY + P++EHY CMVDLLGRAG L++A   +  MP KP++ +W ALL SC
Sbjct: 1156 GWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKPDATIWGALLGSC 1215

Query: 429  RLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDT 488
            R+H ++  A  AA  +FKL  N+    Y+ + N  +   +W+ +  LRE M   GV    
Sbjct: 1216 RIHKNLXFAETAAKNLFKLEPNN-SANYILMMNLYSIFNRWEDMDHLRELMGAAGVRNRQ 1274

Query: 489  GCSWV 493
              SW+
Sbjct: 1275 VWSWI 1279



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 170/373 (45%), Gaps = 67/373 (17%)

Query: 62   FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
            + G++IH  + K G   +  +   L+  + +C  L+ A Q+F E+P      +N  I   
Sbjct: 691  WLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAIILN 750

Query: 122  LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            L++ ++++ + L RK+  S  + +  T   +L+A  C +       N  + +H  + +  
Sbjct: 751  LQSEKLQKGVELFRKMQFSFLKAETATIVRVLQA--CGKMGA---LNAAKQIHGYVFRFG 805

Query: 182  VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
            + +D  L   L+  Y K GK   AR VFD M  +N     SMIS + + GF+ DA  +F 
Sbjct: 806  LDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFY 865

Query: 242  K----TVEKDIVVYNAMIEGY------------------------SISIETARKAL---- 269
            +     ++ DIV +N ++ G+                        S S+ +  +A+    
Sbjct: 866  ELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGEGFKPNSSSMTSVLQAISELG 925

Query: 270  ------EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMID 323
                  E H  +++N F  DV +G++L+DMY K   +  A+ VFD+M+ +N+F W S++ 
Sbjct: 926  FLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKNHSLXSAQAVFDNMKNRNIFAWNSLVS 985

Query: 324  GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS------------------------A 359
            GY   G    AL L   M++  ++P+ VT+ G +S                        A
Sbjct: 986  GYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYAMWGCARKAFMPNSASITCLLRA 1045

Query: 360  CGHAGLVDKGREI 372
            C    L+ KG+EI
Sbjct: 1046 CASLSLLQKGKEI 1058



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 115/249 (46%), Gaps = 12/249 (4%)

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ-GFVEDAEEIFRKTV 244
           D     L+ SY+  G    A +VF + L +N +   S +  F S  G +    E+F++  
Sbjct: 607 DAAAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELH 666

Query: 245 EKDIVVYNAMIEGYSISIETARK------ALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
            K +V  +   E YS++++T  +       +E+H  LIK  F  DV L  AL++ Y +C 
Sbjct: 667 GKGVVFDS---EVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCW 723

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            ++ A +VF  M       W   I    ++    + +ELF  MQ   ++    T +  L 
Sbjct: 724 GLEKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQ 783

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           ACG  G ++  ++I   + R + +   +     ++ +  + G LE A + V +  E  N+
Sbjct: 784 ACGKMGALNAAKQIHGYVFR-FGLDSDVSLCNPLISMYSKNGKLELARR-VFDSMENRNT 841

Query: 419 DVWAALLSS 427
             W +++SS
Sbjct: 842 SSWNSMISS 850



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 96/405 (23%), Positives = 168/405 (41%), Gaps = 29/405 (7%)

Query: 106  LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
            LP+  L   +++       G +   L + ++L   G   D   +S+ LK  TC R    +
Sbjct: 634  LPRNYLKWNSFVEEFKSSAGSLHIVLEVFKELHGKGVVFDSEVYSVALK--TCTRV---M 688

Query: 166  PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
               LG  +H  ++K     D  L  AL++ Y +      A  VF  M     +     I 
Sbjct: 689  DIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGLEKANQVFHEMPNPEALLWNEAII 748

Query: 226  GFMSQGFVEDAEEIFRK------TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
              +    ++   E+FRK        E   +V      G   ++  A+   ++H  + +  
Sbjct: 749  LNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQACGKMGALNAAK---QIHGYVFRFG 805

Query: 280  FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
               DV L + L+ MY+K GK++ ARRVFD M+ +N  +W SMI  Y   G  N A  LF 
Sbjct: 806  LDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSWNSMISSYAALGFLNDAWSLFY 865

Query: 340  MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
             ++   ++P+ VT+   LS     G  ++   I + M+ +   KP       ++  +   
Sbjct: 866  ELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQGE-GFKPNSSSMTSVLQAISEL 924

Query: 400  GSL---EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMAN---IAANEIFKLNANDRP 453
            G L   ++   +VL      +  V  +L+       D+ + N    +A  +F    N   
Sbjct: 925  GFLNMGKETHGYVLRNGFDCDVYVGTSLI-------DMYVKNHSLXSAQAVFDNMKNRNI 977

Query: 454  GAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498
             A+ +L +  +  G ++    L  +M+  G+  D   +W G  SG
Sbjct: 978  FAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDL-VTWNGMISG 1021



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 51/92 (55%)

Query: 64   GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
            G +IH    + G   +  ++  L+ ++ K  +LK A ++F  +  +TL+++N MI G+  
Sbjct: 1055 GKEIHCLSIRNGFIEDVFVATALIDMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAI 1114

Query: 124  NGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
             G  +E++S+  ++   G  PD  TF+ +L A
Sbjct: 1115 FGLGKEAISVFNEMQKVGVGPDAITFTALLSA 1146


>gi|357118484|ref|XP_003560984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Brachypodium distachyon]
          Length = 678

 Score =  268 bits (684), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 154/440 (35%), Positives = 238/440 (54%), Gaps = 13/440 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH  + K G+  N  I+  +L +++KCG  + A Q+FDEL    L  +  MI GY +
Sbjct: 247 GRLIHGSVMKHGLVSNHFITAAMLDMYVKCGEAEDARQVFDELSFVDLVLWTTMIVGYTQ 306

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG   ++L L          P+  T + +L AS   R+      +LGR +H   +K    
Sbjct: 307 NGSPLDALLLFVDDKFMRIVPNSVTIATVLSASAQLRN-----LSLGRSIHGISVKLGAV 361

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
            +DV+  ALVD Y K    S A+ +F  +L K+V+   S+I+G+       DA  +F   
Sbjct: 362 ENDVVMNALVDMYAKCKALSDAKGIFGRVLNKDVVTWNSLIAGYAENDMGSDALMLFSHM 421

Query: 241 --RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
             + ++   I V NA+     +      K    H   +K+ F  ++ + +AL+++Y KC 
Sbjct: 422 RVQGSLPDAISVVNALSACVCLGDLLIGKCF--HTYAVKHAFMSNIYVNTALLNLYNKCA 479

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            +  A+RVF  M  +N  TW +MI GYG  G+   +++LF  M +  +QPN   F   LS
Sbjct: 480 DLPSAQRVFSEMNDRNTVTWGAMIGGYGMQGDSAGSIDLFNEMLKDNIQPNEAVFTSILS 539

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
            C H G+V  G++ FESM   +++ P M+HYACMVD+L RAG+LE+AL+F+ +MP + ++
Sbjct: 540 TCSHTGMVTVGKKCFESMAHYFNITPSMKHYACMVDVLARAGNLEEALEFIQKMPMQADT 599

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            +W A L  C+LH  +E A  A N +  L+  D P   V +SN   + G+WD    +R+ 
Sbjct: 600 SIWQAFLHGCKLHSRLEFAEEAVNRMMVLHP-DTPDFCVMMSNLYTSYGRWDKSLAIRKL 658

Query: 479 MKLRGVLKDTGCSWVGTESG 498
           MK RG++K  GCS VG E+G
Sbjct: 659 MKERGLVKLPGCSSVGLENG 678



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 113/425 (26%), Positives = 204/425 (48%), Gaps = 15/425 (3%)

Query: 48  LPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP 107
           L  AL+  + S    YG ++H  + K G   +  +   L+ ++ K G LK A ++FD +P
Sbjct: 131 LSLALKAAVRSADFGYGRRLHCDVVKAG-GGDLFVMNNLVDMYAKGGDLKNARKVFDRIP 189

Query: 108 QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR 167
            R + ++  M++G L+NG  +E L L  ++      P  YT + +L A T   S      
Sbjct: 190 DRNVVSWTSMLSGCLQNGLAKEGLVLFNEMRQESILPSEYTMASVLMACTMLGS-----L 244

Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
           + GR++H  ++K  + ++  +  A++D YVK G+   AR VFD +   +++  T+MI G+
Sbjct: 245 HQGRLIHGSVMKHGLVSNHFITAAMLDMYVKCGEAEDARQVFDELSFVDLVLWTTMIVGY 304

Query: 228 MSQGFVEDA-----EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
              G   DA     ++ F + V   + +  A +   S  +        +H   +K    E
Sbjct: 305 TQNGSPLDALLLFVDDKFMRIVPNSVTI--ATVLSASAQLRNLSLGRSIHGISVKLGAVE 362

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           +  + +ALVDMYAKC  + DA+ +F  +  K+V TW S+I GY +N   + AL LF  M+
Sbjct: 363 NDVVMNALVDMYAKCKALSDAKGIFGRVLNKDVVTWNSLIAGYAENDMGSDALMLFSHMR 422

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
                P+ ++ + ALSAC   G +  G+  F +    ++    +     +++L  +   L
Sbjct: 423 VQGSLPDAISVVNALSACVCLGDLLIGK-CFHTYAVKHAFMSNIYVNTALLNLYNKCADL 481

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
             A +   EM ++ N+  W A++    +  D   +    NE+ K N       + ++ +T
Sbjct: 482 PSAQRVFSEMNDR-NTVTWGAMIGGYGMQGDSAGSIDLFNEMLKDNIQPNEAVFTSILST 540

Query: 463 LAAAG 467
            +  G
Sbjct: 541 CSHTG 545



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 101/363 (27%), Positives = 169/363 (46%), Gaps = 26/363 (7%)

Query: 40  SNPLTATSLPSALQHYINSDTPFYGLK-IHAHITKTGVKPNTNISIKLLILHLKCGALKY 98
           +NPL    LP+         T    L+ +HA +   G+        KLL  +   G L  
Sbjct: 27  ANPLLHRLLPAC--------TTLPSLRALHARLLAHGLLRGLRAHTKLLSCYAALGDLAS 78

Query: 99  AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSS--GERPDGYTFSMILKAS 156
           A ++ DE P      Y   +  +   G+  E++++ R +      E+ D    S+ LKA+
Sbjct: 79  ARRVLDETPHPDAYTYKVALGWHAAAGRHAEAVAVHRDMRRRCPAEQEDVVVLSLALKAA 138

Query: 157 TCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216
              RS        GR +H  ++K     D  +   LVD Y KGG    AR VFD + ++N
Sbjct: 139 V--RSA---DFGYGRRLHCDVVKAG-GGDLFVMNNLVDMYAKGGDLKNARKVFDRIPDRN 192

Query: 217 VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS---IETARKALEVHC 273
           V+  TSM+SG +  G  ++   +F +  ++ I+     +    ++   + +  +   +H 
Sbjct: 193 VVSWTSMLSGCLQNGLAKEGLVLFNEMRQESILPSEYTMASVLMACTMLGSLHQGRLIHG 252

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
            ++K+    +  + +A++DMY KCG+ +DAR+VFD +   ++  WT+MI GY +NG+P  
Sbjct: 253 SVMKHGLVSNHFITAAMLDMYVKCGEAEDARQVFDELSFVDLVLWTTMIVGYTQNGSPLD 312

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI------FESMERDYSMKPKME 387
           AL LF   +   + PN VT    LSA      +  GR I        ++E D  M   ++
Sbjct: 313 ALLLFVDDKFMRIVPNSVTIATVLSASAQLRNLSLGRSIHGISVKLGAVENDVVMNALVD 372

Query: 388 HYA 390
            YA
Sbjct: 373 MYA 375



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 66/248 (26%), Positives = 115/248 (46%), Gaps = 9/248 (3%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           R +HA++L   +      +T L+  Y   G  + AR V D     +       +    + 
Sbjct: 45  RALHARLLAHGLLRGLRAHTKLLSCYAALGDLASARRVLDETPHPDAYTYKVALGWHAAA 104

Query: 231 GFVEDAEEIFRK------TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDV 284
           G   +A  + R         ++D+VV +  ++    S +       +HC ++K     D+
Sbjct: 105 GRHAEAVAVHRDMRRRCPAEQEDVVVLSLALKAAVRSADFG-YGRRLHCDVVK-AGGGDL 162

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
            + + LVDMYAK G + +AR+VFD +  +NV +WTSM+ G  +NG   + L LF  M++ 
Sbjct: 163 FVMNNLVDMYAKGGDLKNARKVFDRIPDRNVVSWTSMLSGCLQNGLAKEGLVLFNEMRQE 222

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQ 404
            + P+  T    L AC   G + +GR I  S+ + + +       A M+D+  + G  E 
Sbjct: 223 SILPSEYTMASVLMACTMLGSLHQGRLIHGSVMK-HGLVSNHFITAAMLDMYVKCGEAED 281

Query: 405 ALKFVLEM 412
           A +   E+
Sbjct: 282 ARQVFDEL 289



 Score = 45.8 bits (107), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 2/119 (1%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           A S+ +AL   +       G   H +  K     N  ++  LL L+ KC  L  A ++F 
Sbjct: 430 AISVVNALSACVCLGDLLIGKCFHTYAVKHAFMSNIYVNTALLNLYNKCADLPSAQRVFS 489

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           E+  R    +  MI GY   G    S+ L  +++    +P+   F+ IL  STC  + +
Sbjct: 490 EMNDRNTVTWGAMIGGYGMQGDSAGSIDLFNEMLKDNIQPNEAVFTSIL--STCSHTGM 546


>gi|227463000|gb|ACP39952.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227463002|gb|ACP39953.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 592

 Score =  267 bits (683), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 152/437 (34%), Positives = 241/437 (55%), Gaps = 13/437 (2%)

Query: 66  KIHAHITKTGVKPNTNISIKLL-ILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           +IHA I  TG+    ++  KLL   +     + Y  ++F  +P+     ++ +I    K 
Sbjct: 37  QIHARIIITGLGRTRSLITKLLSFAYAAASPISYTRRLFFSIPKPDTFLFHSLITLTSKF 96

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
              +ESL   R+++ +      YTFS ++K+S    +      ++G  +H  +  C    
Sbjct: 97  SFPQESLLCYRRMLLANISSSNYTFSAVIKSSADLTA-----FSIGETIHCHVYICGYGL 151

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT- 243
           D  +  ALV  Y K G    AR VFD M EK V+   SMISG+   GF ++A E+F    
Sbjct: 152 DAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQNGFGKEAVELFFLMQ 211

Query: 244 ---VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
              V+ D   + +++   +  +        VH  + +N F  +V LG+AL++MY++CG +
Sbjct: 212 DLGVKPDSSTFVSLLSACA-QVGAIGLGFWVHEYIARNCFDLNVVLGTALMNMYSRCGNV 270

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
             AR VFD M++KN+  WT+MI GYG +G+ +QA+ELF  M     +PN VTF+  LSAC
Sbjct: 271 SKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNEMSFDGPRPNNVTFVAVLSAC 330

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM-PEKPNSD 419
            HAGLVD+GR+IF +M+++Y + P +EH  CMVD+LGRAG L +A +F+    P++P   
Sbjct: 331 AHAGLVDEGRQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQFIKNTSPKEPAPA 390

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW A+L +C++H + ++    A  +  +   + PG YV LSN  A AG+ D V ++R  M
Sbjct: 391 VWTAMLGACKMHKNFDLGVEVAEHLLSIEPEN-PGHYVMLSNIYALAGRMDRVEKIRNIM 449

Query: 480 KLRGVLKDTGCSWVGTE 496
               + K+ G S +  +
Sbjct: 450 IRNRLKKEVGYSTIDVD 466



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 161/350 (46%), Gaps = 48/350 (13%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH H+   G   +  +   L+  + K G +  A ++FD++P++T+ A+N MI+GY +
Sbjct: 137 GETIHCHVYICGYGLDAYVQAALVSFYAKSGHVMIARKVFDKMPEKTVVAWNSMISGYEQ 196

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  +E++ L   +   G +PD  TF  +L  S C +        LG  VH  I +    
Sbjct: 197 NGFGKEAVELFFLMQDLGVKPDSSTFVSLL--SACAQVGAI---GLGFWVHEYIARNCFD 251

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            + VL TAL++ Y + G  S AR VFD M EKN++  T+MISG+   G    A E+F + 
Sbjct: 252 LNVVLGTALMNMYSRCGNVSKAREVFDSMEEKNIVAWTAMISGYGMHGHGSQAIELFNE- 310

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
                           +S +  R           NV F       A++   A  G +D+ 
Sbjct: 311 ----------------MSFDGPRP---------NNVTF------VAVLSACAHAGLVDEG 339

Query: 304 RRVFDHMQQK-----NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           R++F  M+Q+     +V     M+D  G+ G+ N+A +   +      +P    +   L 
Sbjct: 340 RQIFTTMKQEYGLVPSVEHQVCMVDMLGRAGHLNEAYQF--IKNTSPKEPAPAVWTAMLG 397

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKME-HYACMVDLLGRAGSLEQALK 407
           AC      D G E+ E +    S++P+   HY  + ++   AG +++  K
Sbjct: 398 ACKMHKNFDLGVEVAEHL---LSIEPENPGHYVMLSNIYALAGRMDRVEK 444


>gi|356525712|ref|XP_003531467.1| PREDICTED: pentatricopeptide repeat-containing protein At5g50390,
           chloroplastic-like [Glycine max]
          Length = 691

 Score =  267 bits (683), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 141/434 (32%), Positives = 250/434 (57%), Gaps = 15/434 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++  ++  +G +P+  +  ++L +H+KCG +  A ++FDE+P++ ++++  M+ G +  G
Sbjct: 139 RVFNYMINSGFEPDLYVMNRVLFMHVKCGLMLDARKLFDEMPEKDVASWMTMVGGLVDTG 198

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              E+  L   +          TF+ +++AS    + + L + +G+ +H+  LK  V  D
Sbjct: 199 NFSEAFRLFLCMWKEFNDGRSRTFATMIRAS----AGLGLVQ-VGKQIHSCALKRGVGDD 253

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK--- 242
             +  AL+D Y K G    A  VFD M EK  +   S+I+ +   G+ E+A  ++ +   
Sbjct: 254 HFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYALHGYSEEALSLYFEMRD 313

Query: 243 ---TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
              TV+   +     I     S+E A++A   H  L+++ F  D+   +ALVD Y+K G+
Sbjct: 314 SGTTVDHFTISIVIRICARLASLEHAKQA---HAALVRHGFATDIVANTALVDFYSKWGR 370

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ++DAR VF+ M+ KNV +W ++I GYG +G   +A+E+F  M +  V P +VTFL  LSA
Sbjct: 371 MEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEAVEMFEQMLQEGVTPTHVTFLAVLSA 430

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C ++GL  +G EIF SM+RD+ +KP+  HYACM++LLGR   L++A   +   P KP ++
Sbjct: 431 CSYSGLSQRGWEIFYSMKRDHKVKPRAMHYACMIELLGRESLLDEAYALIRTAPFKPTAN 490

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +WAALL++CR+H ++E+  +AA +++ +   ++   Y+ L N   ++GK      + + +
Sbjct: 491 MWAALLTACRMHKNLELGKLAAEKLYGMEP-EKLCNYIVLLNLYNSSGKLKEAAGILQTL 549

Query: 480 KLRGVLKDTGCSWV 493
           K +G+     CSWV
Sbjct: 550 KKKGLRMLPACSWV 563



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 88/357 (24%), Positives = 170/357 (47%), Gaps = 47/357 (13%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH+   K GV  +  +S  L+ ++ KCG+++ A  +FD++P++T   +N +IA Y  
Sbjct: 238 GKQIHSCALKRGVGDDHFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVGWNSIIASYAL 297

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G  EE+LSL  ++  SG   D +T S++++    C     L     +  HA +++    
Sbjct: 298 HGYSEEALSLYFEMRDSGTTVDHFTISIVIRI---CARLASLEH--AKQAHAALVRHGFA 352

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D V  TALVD Y K G+   AR VF+ M  KNVI   ++I+G+ + G  ++A E+F + 
Sbjct: 353 TDIVANTALVDFYSKWGRMEDARHVFNRMRHKNVISWNALIAGYGNHGQGQEAVEMFEQM 412

Query: 244 VEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           +++ +    V + A++   S S  + R            +F+   +              
Sbjct: 413 LQEGVTPTHVTFLAVLSACSYSGLSQRGW---------EIFYSMKR-------------- 449

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
                   DH  +     +  MI+  G+    ++A   + +++    +P    +   L+A
Sbjct: 450 --------DHKVKPRAMHYACMIELLGRESLLDEA---YALIRTAPFKPTANMWAALLTA 498

Query: 360 CGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
           C     ++ G+    + E+ Y M+P K+ +Y  +++L   +G L++A   +  + +K
Sbjct: 499 CRMHKNLELGK---LAAEKLYGMEPEKLCNYIVLLNLYNSSGKLKEAAGILQTLKKK 552



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/191 (27%), Positives = 96/191 (50%), Gaps = 9/191 (4%)

Query: 250 VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309
            Y+A++    + + + R    V   +I + F  D+ + + ++ M+ KCG + DAR++FD 
Sbjct: 120 TYDALVSA-CVGLRSIRGVKRVFNYMINSGFEPDLYVMNRVLFMHVKCGLMLDARKLFDE 178

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKG 369
           M +K+V +W +M+ G    GN ++A  LF  M +        TF   + A    GLV  G
Sbjct: 179 MPEKDVASWMTMVGGLVDTGNFSEAFRLFLCMWKEFNDGRSRTFATMIRASAGLGLVQVG 238

Query: 370 REIFE-SMERDYSMKPKMEHYA--CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           ++I   +++R        +H+    ++D+  + GS+E A     +MPEK     W ++++
Sbjct: 239 KQIHSCALKRGVG----DDHFVSCALIDMYSKCGSIEDAHCVFDQMPEKTTVG-WNSIIA 293

Query: 427 SCRLHDDVEMA 437
           S  LH   E A
Sbjct: 294 SYALHGYSEEA 304


>gi|225444209|ref|XP_002270866.1| PREDICTED: pentatricopeptide repeat-containing protein At1g50270
           [Vitis vinifera]
 gi|296089231|emb|CBI39003.3| unnamed protein product [Vitis vinifera]
          Length = 601

 Score =  267 bits (683), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 164/490 (33%), Positives = 252/490 (51%), Gaps = 50/490 (10%)

Query: 18  RHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVK 77
           R++ ++P   TFP  L+ +  L N                 + PF   + +AHI K G+ 
Sbjct: 96  RNHGVIPDRHTFPLLLKAFSKLRN-----------------ENPF---QFYAHIVKFGLD 135

Query: 78  PNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL 137
            +  +   L+     CG +  + ++F E  ++ + ++  +I G L+NG+  E+L    ++
Sbjct: 136 FDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEM 195

Query: 138 VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD-VKADDVLYTALVDSY 196
            SSG   D  T   +L A+   R         GR VH   ++   V  D  + +ALVD Y
Sbjct: 196 RSSGVEVDEVTVVSVLCAAAMLRDVW-----FGRWVHGFYVESGRVIWDVYVGSALVDMY 250

Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE 256
            K G    A  VF+ M  +N++   ++I+G++     ++A ++F++ +          IE
Sbjct: 251 SKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMI----------IE 300

Query: 257 GYSISIETARKALEVHCQL-------------IKNVFFEDVKLGSALVDMYAKCGKIDDA 303
           G   +  T   AL    QL              ++    + KLG+ALVDMY+KCG +D+A
Sbjct: 301 GIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVDEA 360

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
             VF+ +  K+V+ WT+MI+G    G+   +L LF  M    VQPN VTFLG LSAC H 
Sbjct: 361 LLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHG 420

Query: 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA 423
           GLVD+G E+F  M  DY ++P ++HY CMVDLLGRAG LE+A+KF+  MP +P   VW A
Sbjct: 421 GLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVWGA 480

Query: 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483
           L S C +H   E+     N + KL  +   G Y+ L+N  +   KW++   +R  MK +G
Sbjct: 481 LFSGCMIHKAFELGEHIGNHLIKLQPH-HSGRYILLANLYSRCQKWEAAANVRRLMKGKG 539

Query: 484 VLKDTGCSWV 493
           V K   CSW+
Sbjct: 540 VDKSPACSWI 549



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 172/349 (49%), Gaps = 26/349 (7%)

Query: 96  LKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           L Y   +FD L    +  +N ++  +  + Q +  L    +L + G  PD +TF ++LKA
Sbjct: 54  LGYTLLLFDRLATPYIFLWNTIVRSFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKA 113

Query: 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
            +  R+  P         +A I+K  +  D  +  +LV ++   G    +R +F    +K
Sbjct: 114 FSKLRNENPF------QFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKK 167

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE----- 270
           +V+  T++I+G +  G   +A E F +     + V    +    +S+  A   L      
Sbjct: 168 DVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTV----VSVLCAAAMLRDVWFG 223

Query: 271 --VHCQLIKN-VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
             VH   +++     DV +GSALVDMY+KCG  DDA +VF+ M  +N+ +W ++I GY +
Sbjct: 224 RWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQ 283

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD-YSMKPKM 386
                +AL++F  M    ++PN  T   AL+AC   G +D+GR + E ++R    +  K+
Sbjct: 284 CNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKL 343

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV--WAALLSSCRLHDD 433
                +VD+  + G +++AL    ++P K   DV  W A+++   +  D
Sbjct: 344 G--TALVDMYSKCGCVDEALLVFEKLPAK---DVYPWTAMINGLAMRGD 387


>gi|449522252|ref|XP_004168141.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g37310-like [Cucumis sativus]
          Length = 635

 Score =  267 bits (683), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 151/469 (32%), Positives = 250/469 (53%), Gaps = 41/469 (8%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++H+ I + G++ +  +   L+  + +C  L  A  MFD +P+R   ++N M+AGY + G
Sbjct: 129 EVHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGYSQGG 188

Query: 126 QVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
             EE   L R ++SS E +P+  T   +L+A  C +SN       G  VH  + +  +K 
Sbjct: 189 SYEECKELFRVMLSSVEVKPNALTAVSVLQA--CAQSN---DLTFGIEVHRFVNESQIKM 243

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
           D  L+ A++  Y K G   YAR +F+ M EK+ I   SMISG+M  GFV  A ++FR+  
Sbjct: 244 DVSLWNAVIGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFREQE 303

Query: 245 EKDIVVYNAMIEGY--------SISI--------------------------ETARKALE 270
              +  +NA+I G         ++ I                           T +   E
Sbjct: 304 RPRLPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKE 363

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           +H   I+N +  ++ + +A++D YAKCG +  A+ VFD ++ +++  WTS+I  Y  +G+
Sbjct: 364 IHGYAIRNTYDRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAVHGD 423

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
            N AL LF  M    +QP+ VTF   L+AC H+G +D+  +IF  +  +Y ++P +EHYA
Sbjct: 424 ANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLVEHYA 483

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
           CMV +L RAG L  A++F+ +MP +P + VW ALL+   +  DVE+     + +F++   
Sbjct: 484 CMVGVLSRAGKLSDAVEFISKMPLEPTAKVWGALLNGASVAGDVELGKYVFDRLFEIEP- 542

Query: 451 DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           +  G YV ++N  + +G+W     +R+ MK   + K  G SW+ T  G+
Sbjct: 543 ENTGNYVIMANLYSQSGRWKDADTIRDLMKEVRLKKIPGNSWIETSGGM 591



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 122/471 (25%), Positives = 218/471 (46%), Gaps = 58/471 (12%)

Query: 58  SDTPFY--GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYN 115
           +D  F+  G ++HA +  + V P+  +  KL+  + K G+++ A  +F ++P++ + ++N
Sbjct: 14  TDHLFFRVGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWN 73

Query: 116 YMIAGYLKNGQVEESLSLVRKLVSSGE---RPDGYTFSMILKASTCCRSNVPLPRNLGRM 172
            +   Y  +    + L L   LV+S     +PD +T +  LKA     SN      L + 
Sbjct: 74  ALFISYTLHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFSN----SGLAKE 129

Query: 173 VHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGF 232
           VH+ IL+  ++ D  +  AL+  Y +  +   ARI+FD M E++ +   +M++G+   G 
Sbjct: 130 VHSFILRRGLEYDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGYSQGGS 189

Query: 233 VEDAEEIFRKTVEKDIVVYNAMIEGYSISIETA-------RKALEVHCQLIKNVFFEDVK 285
            E+ +E+FR  +    V  NA+    ++S+  A          +EVH  + ++    DV 
Sbjct: 190 YEECKELFRVMLSSVEVKPNALT---AVSVLQACAQSNDLTFGIEVHRFVNESQIKMDVS 246

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL-------- 337
           L +A++ +YAKCG +D AR +F+ M +K+  T+ SMI GY  +G  NQA++L        
Sbjct: 247 LWNAVIGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFREQERPR 306

Query: 338 -----------------------FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374
                                  F  MQ    +PN VT    L    H   +  G+EI  
Sbjct: 307 LPTWNAVISGLVQNNRQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGGKEIHG 366

Query: 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDV 434
              R+ +    +     ++D   + G L  A + V +  +  +   W +++S+  +H D 
Sbjct: 367 YAIRN-TYDRNIYVATAIIDSYAKCGYLHGA-QLVFDQIKGRSLIAWTSIISAYAVHGD- 423

Query: 435 EMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485
             AN+A +  +++  N      V  ++ LAA        EL E  K+  VL
Sbjct: 424 --ANVALSLFYEMLTNGIQPDQVTFTSVLAACAH---SGELDEAWKIFNVL 469



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 85/391 (21%), Positives = 193/391 (49%), Gaps = 33/391 (8%)

Query: 27  QTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKL 86
           + F   L + +   N LTA S+   LQ    S+   +G+++H  + ++ +K + ++   +
Sbjct: 195 ELFRVMLSSVEVKPNALTAVSV---LQACAQSNDLTFGIEVHRFVNESQIKMDVSLWNAV 251

Query: 87  LILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDG 146
           + L+ KCG L YA ++F+E+P++    Y  MI+GY+ +G V +++ L R+     ERP  
Sbjct: 252 IGLYAKCGILDYARELFEEMPEKDGITYCSMISGYMVHGFVNQAMDLFRE----QERPRL 307

Query: 147 YTFSMILKASTCCRSNVPLPRNLGRM-VHAQILKCDVKADDVLYTALVD-----SYVKGG 200
            T++ ++  S   ++N    R  G + +   +     + + V   +++      S +KGG
Sbjct: 308 PTWNAVI--SGLVQNN----RQEGAVDIFRAMQSHGCRPNTVTLASILPVFSHFSTLKGG 361

Query: 201 KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI 260
           K  +   + +   ++N+  +T++I  +   G++  A+ +F +   + ++ + ++I  Y++
Sbjct: 362 KEIHGYAIRNTY-DRNIYVATAIIDSYAKCGYLHGAQLVFDQIKGRSLIAWTSIISAYAV 420

Query: 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVF-----DHMQQKNV 315
             + A  AL +  +++ N    D    ++++   A  G++D+A ++F     ++  Q  V
Sbjct: 421 HGD-ANVALSLFYEMLTNGIQPDQVTFTSVLAACAHSGELDEAWKIFNVLLPEYGIQPLV 479

Query: 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES 375
             +  M+    + G  + A+E    M    ++P    +   L+    AG V+ G+ +F  
Sbjct: 480 EHYACMVGVLSRAGKLSDAVEFISKMP---LEPTAKVWGALLNGASVAGDVELGKYVF-- 534

Query: 376 MERDYSMKPK-MEHYACMVDLLGRAGSLEQA 405
            +R + ++P+   +Y  M +L  ++G  + A
Sbjct: 535 -DRLFEIEPENTGNYVIMANLYSQSGRWKDA 564



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 72/328 (21%), Positives = 148/328 (45%), Gaps = 14/328 (4%)

Query: 169 LGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM 228
           +G+ +HA+++   V  D+ L + L+  Y K G    A  VF  +  KN+    ++   + 
Sbjct: 21  VGKQLHARLVLSSVVPDNFLGSKLISFYSKSGSIRDAYNVFGKIPRKNIFSWNALFISYT 80

Query: 229 SQGFVEDAEEIFRKTV-------EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFF 281
                 D  ++F   V       + D       ++  +     +  A EVH  +++    
Sbjct: 81  LHNMHTDLLKLFSSLVNSNSTDVKPDRFTVTCSLKALASLFSNSGLAKEVHSFILRRGLE 140

Query: 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF-CM 340
            D+ + +AL+  Y++C ++  AR +FD M +++  +W +M+ GY + G+  +  ELF  M
Sbjct: 141 YDIFVVNALITFYSRCDELVLARIMFDRMPERDTVSWNAMLAGYSQGGSYEECKELFRVM 200

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           +    V+PN +T +  L AC  +  +  G E+   +     +K  +  +  ++ L  + G
Sbjct: 201 LSSVEVKPNALTAVSVLQACAQSNDLTFGIEVHRFVNES-QIKMDVSLWNAVIGLYAKCG 259

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
            L+ A +   EMPEK +   + +++S   +H  V      A ++F+     R   + A+ 
Sbjct: 260 ILDYARELFEEMPEK-DGITYCSMISGYMVHGFVNQ----AMDLFREQERPRLPTWNAVI 314

Query: 461 NTLAAAGKWDSVTELREKMKLRGVLKDT 488
           + L    + +   ++   M+  G   +T
Sbjct: 315 SGLVQNNRQEGAVDIFRAMQSHGCRPNT 342


>gi|2583119|gb|AAB82628.1| hypothetical protein [Arabidopsis thaliana]
          Length = 606

 Score =  267 bits (683), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 150/473 (31%), Positives = 244/473 (51%), Gaps = 62/473 (13%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH  + KTG+  +  +   L+ L+LKCG L  + QMFD +P+R   +YN MI GY+K
Sbjct: 133 GMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVK 192

Query: 124 NGQVEESLSL-------VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
            G +  +  L       ++ L+S      GY       A T    ++           A 
Sbjct: 193 CGLIVSARELFDLMPMEMKNLISWNSMISGY-------AQTSDGVDI-----------AS 234

Query: 177 ILKCDVKADDVL-YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
            L  D+   D++ + +++D YVK G+   A+ +FD+M  ++V+   +MI G+   GFV  
Sbjct: 235 KLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHH 294

Query: 236 AEEIFRKTVEKDIVVYNAMIEGYS-----------------------------------I 260
           A+ +F +   +D+V YN+M+ GY                                     
Sbjct: 295 AKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIA 354

Query: 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
            +    KA+++H  +++  F+   KLG AL+DMY+KCG I  A  VF+ ++ K++  W +
Sbjct: 355 QLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNA 414

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
           MI G   +G    A ++   ++   ++P+ +TF+G L+AC H+GLV +G   FE M R +
Sbjct: 415 MIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKH 474

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIA 440
            ++P+++HY CMVD+L R+GS+E A   + EMP +PN  +W   L++C  H + E   + 
Sbjct: 475 KIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELV 534

Query: 441 ANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           A  +  L A   P +YV LSN  A+ G W  V  +R  MK R + K  GCSW+
Sbjct: 535 AKHLI-LQAGYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWI 586



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 125/482 (25%), Positives = 218/482 (45%), Gaps = 76/482 (15%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCG---ALKYAGQMFDELPQRTLS--------AY 114
           +IH  + KTG+  N+N++ ++++            +A  +F E    + S         +
Sbjct: 23  QIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEYHVCSFSFGEVEDPFLW 82

Query: 115 NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH 174
           N +I  +       ++L L+  ++ +G   D ++ S++LKA  C R         G  +H
Sbjct: 83  NAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKA--CSRLGFV---KGGMQIH 137

Query: 175 AQI-------------------LKCDV------------KADDVLYTALVDSYVKGGKTS 203
             +                   LKC              K D V Y +++D YVK G   
Sbjct: 138 GFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIV 197

Query: 204 YARIVFDMM-LE-KNVICSTSMISGF--MSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY- 258
            AR +FD+M +E KN+I   SMISG+   S G V+ A ++F    EKD++ +N+MI+GY 
Sbjct: 198 SARELFDLMPMEMKNLISWNSMISGYAQTSDG-VDIASKLFADMPEKDLISWNSMIDGYV 256

Query: 259 -SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT 317
               IE A+   +V  +        DV   + ++D YAK G +  A+ +FD M  ++V  
Sbjct: 257 KHGRIEDAKGLFDVMPR-------RDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVA 309

Query: 318 WTSMIDGYGKNGNPNQALELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREI-FES 375
           + SM+ GY +N    +ALE+F  M +E  + P+  T +  L A    G + K  ++    
Sbjct: 310 YNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYI 369

Query: 376 MERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVE 435
           +E+ + +  K+     ++D+  + GS++ A+  V E  E  + D W A++    +H   E
Sbjct: 370 VEKQFYLGGKLG--VALIDMYSKCGSIQHAM-LVFEGIENKSIDHWNAMIGGLAIHGLGE 426

Query: 436 MANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE-------LREKMKLRGVLKDT 488
            A     +I +L+       +V + N  + +G    V E       +R K K+   L+  
Sbjct: 427 SAFDMLLQIERLSLKPDDITFVGVLNACSHSGL---VKEGLLCFELMRRKHKIEPRLQHY 483

Query: 489 GC 490
           GC
Sbjct: 484 GC 485


>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 819

 Score =  267 bits (683), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 151/436 (34%), Positives = 240/436 (55%), Gaps = 11/436 (2%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           + G +IHAH+ K  ++ +  +   L+ ++ KC  L  A  +FD L +    +YN MI GY
Sbjct: 339 WQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGY 398

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            KN  + E++++ +++     RP   TF  +L  S+       L   L + +H  I+K  
Sbjct: 399 SKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSS-----QLAIELSKQIHGLIIKSG 453

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
              D    +AL+D Y K    + A+ VF+M+  K+++   SMI G       E+A ++F 
Sbjct: 454 TSLDLYAASALIDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFN 513

Query: 242 KTVEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           + +   +      + A++   S ++ +     + H  +IK     D  + +AL+DMYAKC
Sbjct: 514 QLLLSGMAPNEFTFVALVTVAS-TLASMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKC 572

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G I + R +F+    ++V  W SMI  Y ++G+  +AL++F +M E  V+PNYVTF+G L
Sbjct: 573 GFIKEGRMLFESTCGEDVICWNSMITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVL 632

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           SAC HAG V +G   F SM+ +Y ++P +EHYA +V+L GR+G L  A +F+  MP KP 
Sbjct: 633 SACAHAGFVGEGLNHFNSMKSNYDIEPGIEHYASVVNLFGRSGKLHAAKEFIERMPIKPA 692

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
           + VW +LLS+C L  + E+   AA      +  D  G YV LSN  A+ G W  V  LR+
Sbjct: 693 AAVWRSLLSACHLFGNAEIGRYAAEMALLADPTD-SGPYVLLSNIYASKGLWADVHNLRQ 751

Query: 478 KMKLRGVLKDTGCSWV 493
           +M   G +K+TGCSW+
Sbjct: 752 QMDSSGTVKETGCSWI 767



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 118/463 (25%), Positives = 222/463 (47%), Gaps = 56/463 (12%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH +  ++  + +T++   L+ L+ KC  L  A ++FD +  R L ++  MI+GY++
Sbjct: 240 GRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGYMQ 299

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N    E++++   +  +G +PDG+  + IL +   C S   + +  GR +HA ++K D++
Sbjct: 300 NSFNAEAITMFWNMTQAGWQPDGFACTSILNS---CGSLAAIWQ--GRQIHAHVIKADLE 354

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK- 242
           AD+ +  AL+D Y K    + AR VFD + E + I   +MI G+     + +A  IF++ 
Sbjct: 355 ADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRM 414

Query: 243 ---TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
              ++   ++ + +++ G S S      + ++H  +IK+    D+   SAL+D+Y+KC  
Sbjct: 415 RFFSLRPSLLTFVSLL-GVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALIDVYSKCSL 473

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ++DA+ VF+ +  K++  W SMI G+ +N    +A++LF  +    + PN  TF+  ++ 
Sbjct: 474 VNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFTFVALVTV 533

Query: 360 CG-----------HA------------------------GLVDKGREIFESMERDYSMKP 384
                        HA                        G + +GR +FES     +   
Sbjct: 534 ASTLASMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFIKEGRMLFES-----TCGE 588

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSCRLHDDVEMANIAA 441
            +  +  M+    + G  E+AL+    M E   +PN   +  +LS+C  H       +  
Sbjct: 589 DVICWNSMITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSACA-HAGFVGEGLNH 647

Query: 442 NEIFKLNANDRPGA--YVALSNTLAAAGKWDSVTELREKMKLR 482
               K N +  PG   Y ++ N    +GK  +  E  E+M ++
Sbjct: 648 FNSMKSNYDIEPGIEHYASVVNLFGRSGKLHAAKEFIERMPIK 690



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 157/329 (47%), Gaps = 10/329 (3%)

Query: 48  LPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP 107
           L S L+    S     G ++H    K  +  N  +   L+ L+ K G +  A  +F  LP
Sbjct: 123 LASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCMDEAMLVFHALP 182

Query: 108 QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR 167
            RT   +N +I GY + G    +L L  ++   G RPD +  +    A + C +   L  
Sbjct: 183 VRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLA---SAVSACSALGFLEG 239

Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
             GR +H    +   + D  +   L+D Y K  + S AR +FD M  +N++  T+MISG+
Sbjct: 240 --GRQIHGYAYRSATETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSWTTMISGY 297

Query: 228 MSQGFVEDAEEIFRKTVEK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFED 283
           M   F  +A  +F    +     D     +++     S+    +  ++H  +IK     D
Sbjct: 298 MQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCG-SLAAIWQGRQIHAHVIKADLEAD 356

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
             + +AL+DMYAKC  + +AR VFD + + +  ++ +MI+GY KN +  +A+ +F  M+ 
Sbjct: 357 EYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVNIFQRMRF 416

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREI 372
             ++P+ +TF+  L        ++  ++I
Sbjct: 417 FSLRPSLLTFVSLLGVSSSQLAIELSKQI 445



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 158/311 (50%), Gaps = 11/311 (3%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           IHA  T  G   +  ++  LL  +   G L+ A  +FD +P R L ++  +I+ Y ++G+
Sbjct: 40  IHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGR 99

Query: 127 VEESLSL-VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
            + ++SL V    +S E P+ +  + +L+A T  ++      +LG  VH   +K D+ A+
Sbjct: 100 DDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKA-----VSLGEQVHGIAVKLDLDAN 154

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT-- 243
             + TAL++ Y K G    A +VF  +  +  +   ++I+G+   G    A E+F +   
Sbjct: 155 VYVGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGI 214

Query: 244 --VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
             V  D  V  + +   S ++       ++H    ++    D  + + L+D+Y KC ++ 
Sbjct: 215 EGVRPDRFVLASAVSACS-ALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLS 273

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            AR++FD M+ +N+ +WT+MI GY +N    +A+ +F  M +   QP+       L++CG
Sbjct: 274 AARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCG 333

Query: 362 HAGLVDKGREI 372
               + +GR+I
Sbjct: 334 SLAAIWQGRQI 344



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/264 (27%), Positives = 119/264 (45%), Gaps = 6/264 (2%)

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
           R L   +HA+        D  L   L+  Y   G+   AR +FD M  +N++   S+IS 
Sbjct: 34  RRLNPAIHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISM 93

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVFFE 282
           +   G  + A  +F    +    V N  +    +   T  KA+    +VH   +K     
Sbjct: 94  YTQHGRDDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDA 153

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           +V +G+AL+++YAK G +D+A  VF  +  +   TW ++I GY + G    ALELF  M 
Sbjct: 154 NVYVGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMG 213

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
              V+P+      A+SAC   G ++ GR+I     R  + +        ++DL  +   L
Sbjct: 214 IEGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRS-ATETDTSVINVLIDLYCKCSRL 272

Query: 403 EQALKFVLEMPEKPNSDVWAALLS 426
             A K + +  E  N   W  ++S
Sbjct: 273 SAARK-LFDCMEYRNLVSWTTMIS 295


>gi|356510957|ref|XP_003524199.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Glycine max]
          Length = 617

 Score =  267 bits (683), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 161/476 (33%), Positives = 263/476 (55%), Gaps = 50/476 (10%)

Query: 66  KIHAHITKTGVKPNTNISIKLLIL-----HLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120
           ++HA I    ++ ++ +  KLL L     H+   +  Y   +F +L      A+  +I  
Sbjct: 26  EVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHS--YPRLLFSQLHTPNPFAWTALIRA 83

Query: 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ-ILK 179
           Y   G + ++LS    +      P  +TFS +  A    R +      LG  +HAQ +L 
Sbjct: 84  YALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSA-----LGAQLHAQTLLL 138

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
               +D  +  A++D YVK G    AR+VFD M E++VI  T +I  +   G +  A ++
Sbjct: 139 GGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPERDVISWTGLIVAYTRIGDMRAARDL 198

Query: 240 FRKTVEKDIVVYNAMIEGYSI------SIETARK----ALEV------------------ 271
           F     KD+V + AM+ GY+       ++E  R+     +E+                  
Sbjct: 199 FDGLPVKDMVTWTAMVTGYAQNAMPMDALEVFRRLRDEGVEIDEVTLVGVISACAQLGAS 258

Query: 272 -HCQLIKNV-------FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMID 323
            +   I+++         ++V +GSAL+DMY+KCG +++A  VF  M+++NVF+++SMI 
Sbjct: 259 KYANWIRDIAESSGFGVGDNVLVGSALIDMYSKCGNVEEAYDVFKGMRERNVFSYSSMIV 318

Query: 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK 383
           G+  +G    A++LF  M E  V+PN+VTF+G L+AC HAGLVD+G+++F SME+ Y + 
Sbjct: 319 GFAIHGRARAAIKLFYDMLETGVKPNHVTFVGVLTACSHAGLVDQGQQLFASMEKCYGVA 378

Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANE 443
           P  E YACM DLL RAG LE+AL+ V  MP + +  VW ALL +  +H + ++A IA+  
Sbjct: 379 PTAELYACMTDLLSRAGYLEKALQLVETMPMESDGAVWGALLGASHVHGNPDVAEIASKR 438

Query: 444 IFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           +F+L   D  G Y+ LSNT A+AG+WD V+++R+ ++ + + K+ G SWV  ++G+
Sbjct: 439 LFELEP-DNIGNYLLLSNTYASAGRWDDVSKVRKLLREKNLKKNPGWSWVEAKNGM 493



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 47/170 (27%), Positives = 73/170 (42%), Gaps = 20/170 (11%)

Query: 267 KALEVHCQL-IKN------VFFEDVKLGSAL--VDMYAKCGKIDDARRVFDHMQQKNVFT 317
           +A EVH Q+ IKN      V  + ++L +AL  V +++        R +F  +   N F 
Sbjct: 23  QAKEVHAQIYIKNLQQSSYVLTKLLRLVTALPHVPLHSY------PRLLFSQLHTPNPFA 76

Query: 318 WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377
           WT++I  Y   G  +QAL  +  M++  V P   TF    SAC        G ++     
Sbjct: 77  WTALIRAYALRGPLSQALSFYSSMRKRRVSPISFTFSALFSACAAVRHSALGAQLHAQTL 136

Query: 378 RDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV--WAALL 425
                   +     ++D+  + GSL  A     EMPE+   DV  W  L+
Sbjct: 137 LLGGFSSDLYVNNAVIDMYVKCGSLRCARMVFDEMPER---DVISWTGLI 183


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 148/435 (34%), Positives = 254/435 (58%), Gaps = 13/435 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCG---ALKYAGQMFDELPQRTLSAYNYMIAG 120
           G ++H+ + + G+  +T +S  L+ ++ K     +++ A ++F  +P   + ++  +I+G
Sbjct: 268 GQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTHNVMSWTALISG 327

Query: 121 YLK-NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           Y++  GQ   ++ L+ ++++    P+  T+S +LKA     +N+   ++ GR +HA+++K
Sbjct: 328 YVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKAC----ANLS-DQDSGRQIHARVMK 382

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
             +   +V+  ALV  Y + G    AR  FD + E+N++ ++S I G   +     + +I
Sbjct: 383 TSIGNVNVVGNALVSMYAESGCMEEARKAFDQLYERNLLSTSSDI-GETGRSNASWSSQI 441

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               V      + +++   + ++    K  ++H   IK  F  D  + ++LV MY++CG 
Sbjct: 442 ESMDVGVSTFTFASLLSA-AATVGLPTKGQQLHALSIKTGFESDKGISNSLVSMYSRCGY 500

Query: 300 IDDARRVFDHMQQ-KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           +DDA R FD M+   NV +WTS+I    K+G+  +AL LF  M    V+PN VT++  LS
Sbjct: 501 LDDACRAFDEMEDDHNVISWTSIISALAKHGHAERALSLFHDMILSGVKPNDVTYIAVLS 560

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC H GLV +G+E F SM++D+ + P+MEHYACMVDLL R+G +++AL+F+ EMP K ++
Sbjct: 561 ACSHVGLVKEGKEYFRSMQKDHRLIPRMEHYACMVDLLARSGLVQEALEFINEMPCKADA 620

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            VW  LL +CR ++++E+  IAA  +  L   D P  YV LSN  A  G WD V  +R  
Sbjct: 621 LVWKTLLGACRTYENIEIGEIAARHVIDLEPQD-PAPYVLLSNLYAHGGLWDEVARIRSL 679

Query: 479 MKLRGVLKDTGCSWV 493
           M+ R + K+TG SW+
Sbjct: 680 MRHRNLSKETGLSWM 694



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 108/409 (26%), Positives = 191/409 (46%), Gaps = 30/409 (7%)

Query: 25  PNQTFPPKLQNYDSLS-NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGV-KPNTNI 82
           P++   P+  N  +LS +P +A+   S L     +     G  +H  +  T V   +  +
Sbjct: 22  PHRHPNPRAANLQALSSDPPSASDAASLLAAAARAGDLRLGRALHRRLLGTEVLDADALV 81

Query: 83  SIKLLILHLKCGALKYAGQMFDELPQ-RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG 141
           +  LL ++ KCG ++ A ++FD +   R L ++  M     +NG  +E+L L+ +++ SG
Sbjct: 82  ANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQEALVLLGEMLESG 141

Query: 142 ERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK-----ADDVLYTALVDSY 196
            RP+ +T         C  ++   P  L R     +L   +K      D  +  AL+D +
Sbjct: 142 LRPNAFTL--------CAAAHACFPGELFRSSGGTVLGFAIKTGFWGTDVSVGCALIDMF 193

Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYN 252
            + G    AR VF+ ++E+ V+  T MI+ ++  G    A E+F        E D    +
Sbjct: 194 ARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMS 253

Query: 253 AMIEGYSISIETARKAL--EVHCQLIKNVFFEDVKLGSALVDMYAKC---GKIDDARRVF 307
           +M+   S   E     L  ++H  +++     D  +   LVDMY K      ++ AR+VF
Sbjct: 254 SMV---SACAEQGSAGLGQQLHSLVLRLGLVSDTCVSCGLVDMYTKLQMEQSMECARKVF 310

Query: 308 DHMQQKNVFTWTSMIDGYGK-NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
             M   NV +WT++I GY +  G  N A+EL C M    ++PN++T+   L AC +    
Sbjct: 311 KRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQ 370

Query: 367 DKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
           D GR+I   + +       +   A +V +   +G +E+A K   ++ E+
Sbjct: 371 DSGRQIHARVMKTSIGNVNVVGNA-LVSMYAESGCMEEARKAFDQLYER 418



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 95/375 (25%), Positives = 184/375 (49%), Gaps = 23/375 (6%)

Query: 73  KTGV-KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESL 131
           KTG    + ++   L+ +  + G L  A ++F+ L +RT+  +  MI  Y++ G   +++
Sbjct: 175 KTGFWGTDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAV 234

Query: 132 SLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTA 191
            L   ++  G  PDGYT S ++ A  C          LG+ +H+ +L+  + +D  +   
Sbjct: 235 ELFLGMLEDGFEPDGYTMSSMVSA--CAEQG---SAGLGQQLHSLVLRLGLVSDTCVSCG 289

Query: 192 LVDSYVK---GGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE-----EIFRKT 243
           LVD Y K         AR VF  M   NV+  T++ISG++  G  E+       E+  ++
Sbjct: 290 LVDMYTKLQMEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNES 349

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
           +E + + Y+++++  + ++       ++H +++K        +G+ALV MYA+ G +++A
Sbjct: 350 IEPNHLTYSSLLKACA-NLSDQDSGRQIHARVMKTSIGNVNVVGNALVSMYAESGCMEEA 408

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
           R+ FD + ++N+ + +S I   G+ G  N +      ++   V  +  TF   LSA    
Sbjct: 409 RKAFDQLYERNLLSTSSDI---GETGRSNASWS--SQIESMDVGVSTFTFASLLSAAATV 463

Query: 364 GLVDKGREIFE-SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
           GL  KG+++   S++  +     + +   +V +  R G L+ A +   EM +  N   W 
Sbjct: 464 GLPTKGQQLHALSIKTGFESDKGISN--SLVSMYSRCGYLDDACRAFDEMEDDHNVISWT 521

Query: 423 ALLSSCRLHDDVEMA 437
           +++S+   H   E A
Sbjct: 522 SIISALAKHGHAERA 536



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 4/133 (3%)

Query: 26  NQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIK 85
           N ++  ++++ D   +  T  SL SA         P  G ++HA   KTG + +  IS  
Sbjct: 434 NASWSSQIESMDVGVSTFTFASLLSAAA---TVGLPTKGQQLHALSIKTGFESDKGISNS 490

Query: 86  LLILHLKCGALKYAGQMFDELP-QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERP 144
           L+ ++ +CG L  A + FDE+     + ++  +I+   K+G  E +LSL   ++ SG +P
Sbjct: 491 LVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISALAKHGHAERALSLFHDMILSGVKP 550

Query: 145 DGYTFSMILKAST 157
           +  T+  +L A +
Sbjct: 551 NDVTYIAVLSACS 563


>gi|449446466|ref|XP_004140992.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 638

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 150/437 (34%), Positives = 255/437 (58%), Gaps = 17/437 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G   HA I   G+K +   S  L+ ++ KCG++ +A Q+FDE+P R+L ++N MI    +
Sbjct: 83  GKACHAQILLMGLKTDLLTSNILINMYSKCGSVDFARQVFDEMPSRSLVSWNTMIGSLTQ 142

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG+  E+L L+ ++   G     +T S +L A   C +   L     +++HA  +K  + 
Sbjct: 143 NGEENEALDLLLQMQREGTPFSEFTISSVLCA---CAAKCALSE--CQLLHAFAIKAAMD 197

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +  + TAL+D Y K G    A  VF+ M +++V+  +SM +G++     E A  +FRK 
Sbjct: 198 LNVFVATALLDVYAKCGLMKDAVCVFESMPDRSVVTWSSMAAGYVQNEMYEQALALFRKA 257

Query: 244 VE----KDIVVYNAMI---EGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
            E     D  + +++I    G +  IE      +++  L K+ F  ++ + S+L+DMYAK
Sbjct: 258 WETGLKHDQFLMSSVICACAGLAAMIEGK----QMNALLSKSGFCSNIFVASSLIDMYAK 313

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG I+++ +VF  ++++NV  W +MI G  ++    + + LF  MQ+  + PN VTF+  
Sbjct: 314 CGGIEESYKVFRDVEKRNVVLWNAMISGLSRHARSLEVMILFEKMQQMGLSPNDVTFVSV 373

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           LSACGH GLV KG++ F+ M +++ + P + HY+CMVD L RAG + +A   + ++P   
Sbjct: 374 LSACGHMGLVRKGQKYFDLMTKEHHLAPNVFHYSCMVDTLSRAGQIFEAYDLISKLPFNA 433

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
           ++ +W +LL+SCR H ++E+A +AA ++F +  ++  G Y+ LSN  AA GKWD V ++R
Sbjct: 434 SASMWGSLLASCRTHGNLELAEVAAKKLFDIEPHN-SGNYLLLSNMYAANGKWDEVAKMR 492

Query: 477 EKMKLRGVLKDTGCSWV 493
           + +K   V K+ G SW+
Sbjct: 493 KLLKESDVKKERGKSWI 509


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 159/451 (35%), Positives = 248/451 (54%), Gaps = 11/451 (2%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +L S L+    S     G +IH  + K     +  I+  L+ ++ K G L  A ++FD +
Sbjct: 305 TLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGLLDDAKKVFDWI 364

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           PQR L  +N +I+G     Q  E+LSL  ++   G   +  T + +LK++    +     
Sbjct: 365 PQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDT- 423

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
               R VHA   K    +D  +   L+DSY K    +YA  VF+     ++I  TSMI+ 
Sbjct: 424 ----RQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITA 479

Query: 227 FMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
                  EDA ++F    RK ++ D  V ++++   + S+    +  +VH  LIK  F  
Sbjct: 480 LSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACA-SLSAYEQGKQVHAHLIKRQFMS 538

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           DV  G+ALV  YAKCG I+DA   F  + +K V +W++MI G  ++G+  +AL++F  M 
Sbjct: 539 DVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMV 598

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
           +  + PN++T    L AC HAGLVD+ +  F SM+  + ++   EHYACM+DLLGRAG L
Sbjct: 599 DEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKL 658

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
           + A++ V  MP + N+ VW ALL++ R+H D E+  +AA ++F L   ++ G +V L+NT
Sbjct: 659 DDAMELVNSMPFQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEP-EKSGTHVLLANT 717

Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            A+AG WD V ++R+ MK   V K+   SWV
Sbjct: 718 YASAGMWDDVAKVRKLMKDSKVKKEPAMSWV 748



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 103/386 (26%), Positives = 172/386 (44%), Gaps = 26/386 (6%)

Query: 52  LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL 111
           L  Y  + +   G  IHAH+ K+G+         LL  + KC     A ++FDE+P    
Sbjct: 11  LTRYAATQSLLQGAHIHAHLLKSGL--FAVFRNHLLSFYSKCRLPGSARRVFDEIPDPCH 68

Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR 171
            +++ ++  Y  N    ++L   R + S   R + +   ++LK +             G 
Sbjct: 69  VSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAP--------DAGFGT 120

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM-LEKNVICSTSMISGFMSQ 230
            +HA  +   +  D  +  ALV  Y   G    AR+VFD    E+N +    ++S ++  
Sbjct: 121 QLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKN 180

Query: 231 GFVEDAEEIFRKTVEKDI--------VVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
                A ++F + V   +         V NA     S  +E  RK   VH  +I+  + +
Sbjct: 181 DRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTG--SRDLEAGRK---VHAMVIRTGYDK 235

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           DV   +ALVDMY+K G I  A  VF  + + +V +W + I G   +G+   ALEL   M+
Sbjct: 236 DVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMK 295

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
              + PN  T    L AC  +G  + GR+I   M +  +       +  +VD+  + G L
Sbjct: 296 SSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFG-LVDMYAKHGLL 354

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSC 428
           + A K    +P++ +  +W AL+S C
Sbjct: 355 DDAKKVFDWIPQR-DLVLWNALISGC 379


>gi|449449306|ref|XP_004142406.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Cucumis sativus]
          Length = 782

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 147/446 (32%), Positives = 249/446 (55%), Gaps = 44/446 (9%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE-RP 144
           L+ L+++ G  + A   F+++P R + ++N MI+GY + G   E+L +  K+++    +P
Sbjct: 214 LISLYMQSGQFELAASQFEKMPDRDIVSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKP 273

Query: 145 DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSY 204
           D +T + IL A   C +   L  N+G+ +HA IL+ + +    +  AL+  Y K G    
Sbjct: 274 DNFTLASILSA---CANLEKL--NIGKQIHAYILRAETETSGAVGNALISMYAKSGGVEI 328

Query: 205 ARIVFDMMLEKN--VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS--- 259
           AR++ +     N  +I  TS++ G+   G V+ A EIF K  ++D+V + AMI GY    
Sbjct: 329 ARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGYVQNG 388

Query: 260 ---------------------------ISIETARKALE----VHCQLIKNVFFEDVKLGS 288
                                      +S+ ++   LE    +H   IK        + +
Sbjct: 389 LWNDALELFRLMVNEGPEPNSYTLAAMLSVSSSLTILEHGKQIHASAIKAGESSTPSVTN 448

Query: 289 ALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347
           AL+ MYAK G I+ A+RVFD    +K + +WTSMI    ++G   +A+ LF  M    ++
Sbjct: 449 ALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMK 508

Query: 348 PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALK 407
           P+++T++G LSAC H GLV++GR+ +  M   + ++P + HYACM+DL GRAG L++A  
Sbjct: 509 PDHITYVGVLSACTHVGLVEQGRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYL 568

Query: 408 FVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG 467
           F+  MP +P++  W +LL+SC++H + ++A +AA  +  ++  +  GAY+AL+N  +A G
Sbjct: 569 FIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGN-SGAYLALANVYSACG 627

Query: 468 KWDSVTELREKMKLRGVLKDTGCSWV 493
           KW++  + R+ MK RGV K+ G SW+
Sbjct: 628 KWENAAQTRKLMKDRGVRKEKGISWI 653



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 121/493 (24%), Positives = 212/493 (43%), Gaps = 109/493 (22%)

Query: 40  SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYA 99
           ++P ++      LQ  +    PF G  +H  I K G+     +   L+  + K G+L++A
Sbjct: 5   NSPTSSEFFAHILQTSVRIKDPFAGRSVHCQIIKKGLHLGVYLMNNLMTFYAKTGSLRFA 64

Query: 100 GQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV------------------------- 134
             +FDE+P ++  ++N +I+GY K G  E S  L+                         
Sbjct: 65  HHVFDEMPLKSTFSWNTLISGYAKQGNFEVSRRLLYEMPDCDPVSWTAIIVGYNQFGLFD 124

Query: 135 ------RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVL 188
                  K++S    P  +T S +L   + C +N  L  ++GR +H+ ++K  + +   +
Sbjct: 125 NAIWMFAKMISERVPPSQFTVSNVL---SSCAANQTL--DIGRKIHSFVVKLGLGSCVPV 179

Query: 189 YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI 248
            T+L++ Y K G    A++VFD M  KN+    ++IS +M  G  E A   F K  ++DI
Sbjct: 180 ATSLLNMYAKCGDPVIAKVVFDRMTVKNISTWNALISLYMQSGQFELAASQFEKMPDRDI 239

Query: 249 VVYNAMIEGYS----------------------------ISIETARKALE-------VHC 273
           V +N+MI GYS                             SI +A   LE       +H 
Sbjct: 240 VSWNSMISGYSQQGYNLEALVIFSKMLNEPSLKPDNFTLASILSACANLEKLNIGKQIHA 299

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKID-------------------------------- 301
            +++        +G+AL+ MYAK G ++                                
Sbjct: 300 YILRAETETSGAVGNALISMYAKSGGVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNV 359

Query: 302 -DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
             AR +F+ ++ ++V  WT+MI GY +NG  N ALELF +M     +PN  T    LS  
Sbjct: 360 KPAREIFNKLRDRDVVAWTAMIVGYVQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVS 419

Query: 361 GHAGLVDKGREIFES-MERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
               +++ G++I  S ++   S  P + +   ++ +  + G++  A K V ++P      
Sbjct: 420 SSLTILEHGKQIHASAIKAGESSTPSVTN--ALIAMYAKTGNINVA-KRVFDLPNGKKEI 476

Query: 420 V-WAALLSSCRLH 431
           V W +++ +   H
Sbjct: 477 VSWTSMIMALAQH 489



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 75/312 (24%), Positives = 144/312 (46%), Gaps = 23/312 (7%)

Query: 64  GLKIHAHITKTGVKPNTNIS--IKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           G++I   I +     N NI     LL  + K G +K A ++F++L  R + A+  MI GY
Sbjct: 325 GVEIARLIVEHNRTSNLNIIAFTSLLDGYTKLGNVKPAREIFNKLRDRDVVAWTAMIVGY 384

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           ++NG   ++L L R +V+ G  P+ YT + +L  S    S++ +  + G+ +HA  +K  
Sbjct: 385 VQNGLWNDALELFRLMVNEGPEPNSYTLAAMLSVS----SSLTILEH-GKQIHASAIKAG 439

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDM-MLEKNVICSTSMISGFMSQGFVEDAEEIF 240
             +   +  AL+  Y K G  + A+ VFD+   +K ++  TSMI      G  ++A  +F
Sbjct: 440 ESSTPSVTNALIAMYAKTGNINVAKRVFDLPNGKKEIVSWTSMIMALAQHGLGKEAINLF 499

Query: 241 RKTV----EKDIVVYNAMIEG--YSISIETARKALEVHCQLIKNVFFEDVKLG--SALVD 292
            + +    + D + Y  ++    +   +E  RK    +  ++  V   +  L   + ++D
Sbjct: 500 ERMLSVGMKPDHITYVGVLSACTHVGLVEQGRK----YYNMMTEVHEIEPTLSHYACMID 555

Query: 293 MYAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDG--YGKNGNPNQALELFCMMQECCVQPN 349
           +Y + G + +A    + M  + +   W S++      KN +  +      ++ +      
Sbjct: 556 LYGRAGLLQEAYLFIESMPIEPDNIAWGSLLASCKIHKNADLAKVAAERLLLIDPGNSGA 615

Query: 350 YVTFLGALSACG 361
           Y+      SACG
Sbjct: 616 YLALANVYSACG 627



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 47/199 (23%), Positives = 99/199 (49%), Gaps = 20/199 (10%)

Query: 31  PKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILH 90
           P+  +Y +L+  L+ +S  + L+H         G +IHA   K G     +++  L+ ++
Sbjct: 405 PEPNSY-TLAAMLSVSSSLTILEH---------GKQIHASAIKAGESSTPSVTNALIAMY 454

Query: 91  LKCGALKYAGQMFDELP--QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYT 148
            K G +  A ++FD LP  ++ + ++  MI    ++G  +E+++L  +++S G +PD  T
Sbjct: 455 AKTGNINVAKRVFD-LPNGKKEIVSWTSMIMALAQHGLGKEAINLFERMLSVGMKPDHIT 513

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKC-DVKADDVLYTALVDSYVKGGKTSYARI 207
           +  +L A T    +V L    GR  +  + +  +++     Y  ++D Y + G    A +
Sbjct: 514 YVGVLSACT----HVGLVEQ-GRKYYNMMTEVHEIEPTLSHYACMIDLYGRAGLLQEAYL 568

Query: 208 VFDMM-LEKNVICSTSMIS 225
             + M +E + I   S+++
Sbjct: 569 FIESMPIEPDNIAWGSLLA 587


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 139/406 (34%), Positives = 242/406 (59%), Gaps = 10/406 (2%)

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           KCG+L YA ++F  +  +T++++N +I GY ++     SL    ++ SSG  PD +T   
Sbjct: 440 KCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCS 499

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           +L A +  +S       LG+ VH  I++  ++ D  +Y +L+  Y+  G+ S A ++FD 
Sbjct: 500 LLSACSQIKS-----LKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDA 554

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIV---VYNAMIEGYSISIETARKA 268
           M +K ++   +M++G++  GF E A  +FR+ V   +    +    + G    + + R  
Sbjct: 555 MEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISMMSVFGACSLLPSLRLG 614

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
            E H   +K +  ++  +  +++DMYAK G + ++ +VF+ +++++V +W +M+ GYG +
Sbjct: 615 REAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIH 674

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G   +A++LF  MQ     P+ +TFLG L+AC H+GLV +G    + M+  + M P ++H
Sbjct: 675 GRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKH 734

Query: 389 YACMVDLLGRAGSLEQALKFVL-EMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           YAC++D+L RAG L++ALK    EM E+P   +W  LLSSCR+H ++EM    A ++F +
Sbjct: 735 YACVIDMLVRAGKLDEALKIATEEMSEEPGVGIWNFLLSSCRIHKNLEMGEKIAAKLF-V 793

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           +  ++P  YV LSN  A +GKWD V ++R++MK   + KD GCSW+
Sbjct: 794 SEPEKPENYVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKDAGCSWI 839



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 177/378 (46%), Gaps = 27/378 (7%)

Query: 64  GLKIHAHITKTGVKPNTNI-SIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G KIH  ++++    N ++   +++ ++  CG+   +  +FD L ++ L  +N +I+ Y 
Sbjct: 100 GRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYS 159

Query: 123 KNGQVEESLSLVRKLVS-SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           +N      L +  K+++ SG  PD +TF  ++KA     S V     +G  VH  ++K  
Sbjct: 160 RNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGV-SEV----QVGLAVHGLVVKTR 214

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +  D  +  ALV  Y   G  S A  VF +M E+N++   SMI  F   G  E+   +  
Sbjct: 215 LVEDVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLG 274

Query: 242 KTVEKDI-VVYNAMIEGYSISIETARKALE------VHCQLIKNVFFEDVKLGSALVDMY 294
           + +EKD  + +   +   +  +    +  E      VH   +K    ++V + +AL+DMY
Sbjct: 275 QMMEKDDEIAFTPDVATLATVLPVCARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMY 334

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC--VQPNYVT 352
           +KCG I+DA+ +F     KNV +W +M+ G+   G+ ++  +L   M      ++ + VT
Sbjct: 335 SKCGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVT 394

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH-----YACMVDLLGRAGSLEQALK 407
            L A+  C    ++   +E+       YS+K +  H         V    + GSL  A +
Sbjct: 395 ILNAVPVCFEESVLPNLKEL-----HCYSLKQEFVHNNELVANAFVASYAKCGSLSYAHR 449

Query: 408 FVLEMPEKPNSDVWAALL 425
               +  K   + W AL+
Sbjct: 450 VFCSIRSK-TVNSWNALI 466



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 82/314 (26%), Positives = 150/314 (47%), Gaps = 21/314 (6%)

Query: 6   RIRSSVFSSTHNRHYTLVPP-NQTFPPKL--------QNYDSLSNPLTATSLPSALQHYI 56
           R+  S+ S T N    L+   +Q+  P+L        ++   L +  T  SL SA     
Sbjct: 449 RVFCSIRSKTVNSWNALIGGYSQSSDPRLSLDAYFQMKSSGLLPDLFTVCSLLSACSQI- 507

Query: 57  NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNY 116
              +   G ++H  I +  ++ ++ + I LL L++ CG L  A  +FD +  +TL ++N 
Sbjct: 508 --KSLKLGKEVHGLIIRNRLERDSFVYISLLSLYIHCGELSTAHVLFDAMEDKTLVSWNT 565

Query: 117 MIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
           M+ GYL+NG  E +LSL R++V  G +P     SM+     C  S +P  R LGR  H  
Sbjct: 566 MVNGYLQNGFPERALSLFRQMVLYGVQP--CEISMMSVFGAC--SLLPSLR-LGREAHGY 620

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
            LKC ++ +  +  +++D Y K G    +  VF+ + E++V    +M+ G+   G  ++A
Sbjct: 621 ALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGLKERSVASWNAMVMGYGIHGRAKEA 680

Query: 237 EEIFRKTVEKDIVVYNAMIEGYSISIETARKALE--VHCQLIKNVFFED--VKLGSALVD 292
            ++F +              G   +   +    E   +   +K +F  +  +K  + ++D
Sbjct: 681 IKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGLTYLDQMKTLFGMNPTLKHYACVID 740

Query: 293 MYAKCGKIDDARRV 306
           M  + GK+D+A ++
Sbjct: 741 MLVRAGKLDEALKI 754



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 127/303 (41%), Gaps = 25/303 (8%)

Query: 169 LGRMVHAQILK-CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
           LGR +H  + +   +  DDVL T ++  Y   G    +R VFD + +KN+    ++IS +
Sbjct: 99  LGRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSY 158

Query: 228 MSQGFVEDAEEIFRKTVEK-----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
                  +  E+F K + +     D   +  +++  +  +   +  L VH  ++K    E
Sbjct: 159 SRNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACA-GVSEVQVGLAVHGLVVKTRLVE 217

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM- 341
           DV + +ALV  Y   G + DA RVF  M ++N+ +W SMI  +  NG   +   L   M 
Sbjct: 218 DVFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMM 277

Query: 342 ---QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398
               E    P+  T    L  C     +  G+ +   +    S+  ++     ++D+  +
Sbjct: 278 EKDDEIAFTPDVATLATVLPVCARDREIGVGKGV-HGLAMKLSLDKEVVVNNALMDMYSK 336

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEM------------ANIAANEIFK 446
            G +  A + + ++    N   W  ++       D+               ++ A+E+  
Sbjct: 337 CGCINDA-QVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTI 395

Query: 447 LNA 449
           LNA
Sbjct: 396 LNA 398


>gi|224092370|ref|XP_002309579.1| predicted protein [Populus trichocarpa]
 gi|222855555|gb|EEE93102.1| predicted protein [Populus trichocarpa]
          Length = 854

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 148/435 (34%), Positives = 235/435 (54%), Gaps = 42/435 (9%)

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149
           ++K   +  A Q+FD++ +R+L ++  M++GY++ G   ESL L +++      PD    
Sbjct: 312 YVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVAL 371

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVF 209
             +L A            +LGR VHA I+   +  D  L  AL+D Y K GK   A   F
Sbjct: 372 VTVLSACVHLED-----FDLGRSVHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTF 426

Query: 210 DMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL 269
           + +  K+     SM+ GF   G V+ A + F K  EKDIV +N M+  Y +  +   ++ 
Sbjct: 427 EQLPCKSAASWNSMLDGFCRSGGVDKARDFFNKIPEKDIVSWNTMVNAY-VKHDLFNESF 485

Query: 270 EVHCQLIK-----------------------------NVFFE------DVKLGSALVDMY 294
           E+ C++                               NV+ E      D  LG+AL+DMY
Sbjct: 486 EIFCKMQSSNVKPDKTTLISLLSSCAKVGALNHGIWVNVYIEKNEIGIDAMLGTALIDMY 545

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
            KCG ++ A  +F  + +KNVF WT+M+  Y   G   +A++L+  M+E  V+P++VTF+
Sbjct: 546 GKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYAMEGQALEAIDLYLEMEERGVKPDHVTFI 605

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             L+AC H GLVD+G + F  +   Y++ P + HY CMVDLLGR G LE+ +KF+  MP 
Sbjct: 606 ALLAACSHGGLVDEGYKYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPI 665

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
           +P+  +W++L+ +CR H +VE+A  A  ++ +++  +  GA+V LSN  A AG+WD V++
Sbjct: 666 EPDVSIWSSLMRACRSHHNVELAEQAFKQLIEIDPTNN-GAHVLLSNIYADAGRWDDVSK 724

Query: 475 LREKMKLRGVLKDTG 489
           +R K+   GV K  G
Sbjct: 725 VRTKLHETGVPKQPG 739



 Score =  170 bits (431), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 117/428 (27%), Positives = 207/428 (48%), Gaps = 68/428 (15%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H  I K G   N +++  L+ L+ KCG LK   Q+F+++  R + ++N MI+ Y+ 
Sbjct: 152 GSEVHGRILKCGFGRNKSLNNNLMGLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVL 211

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN--------------------- 162
            G   E+L L  +++ SG  PD  T  M+   STC +                       
Sbjct: 212 KGMYREALDLFDEMLVSGVLPDEIT--MVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRG 269

Query: 163 ------VPLPRNLGRM--VHAQILKCD-VKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
                 V +    G+M   H  + +CD  + D VL+T LV  YVK  K   AR +FD M 
Sbjct: 270 SLLNCLVDMYSKCGKMDEAHGLLSRCDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMN 329

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIV---VYNAMIEGYSISIETARKALE 270
           E++++  T+M+SG++  G+  ++ E+F++   ++++   V    +    + +E       
Sbjct: 330 ERSLVSWTTMMSGYVQGGYYCESLELFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRS 389

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           VH  ++      D  LG+AL+D+YAKCGK+D+A R F+ +  K+  +W SM+DG+ ++G 
Sbjct: 390 VHAFIVTYGMLVDGFLGNALLDLYAKCGKLDEALRTFEQLPCKSAASWNSMLDGFCRSGG 449

Query: 331 P-------------------------------NQALELFCMMQECCVQPNYVTFLGALSA 359
                                           N++ E+FC MQ   V+P+  T +  LS+
Sbjct: 450 VDKARDFFNKIPEKDIVSWNTMVNAYVKHDLFNESFEIFCKMQSSNVKPDKTTLISLLSS 509

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C   G ++ G  +   +E++      M   A ++D+ G+ G +E A +   ++ EK N  
Sbjct: 510 CAKVGALNHGIWVNVYIEKNEIGIDAMLGTA-LIDMYGKCGCVEMAYEIFTQIIEK-NVF 567

Query: 420 VWAALLSS 427
           VW A++++
Sbjct: 568 VWTAMMAA 575



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 119/454 (26%), Positives = 200/454 (44%), Gaps = 56/454 (12%)

Query: 17  NRHYTLVPPNQTFPPKLQNYDSLSNPLTATSL--PSALQHYINSDTPFYGLK-IHAHITK 73
           N  ++ + P+   PP L       NP T+ S+  P  +   + S +       IHAH+  
Sbjct: 8   NIFFSSLSPSIHKPPTL-------NPKTSHSVLRPHWIIDLLKSCSNIREFSPIHAHLIT 60

Query: 74  TGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL 133
             +  +  I+ ++L   L    L  A Q+     +     +N ++   LK G  +E L  
Sbjct: 61  ANLIHDPEITSQVLAFLLSVNNLDCAHQILSYSHEPESIIWNTLLENKLKEGCPQEVLEC 120

Query: 134 VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALV 193
              +V+ G   D  TF  ++ A  CC++       LG  VH +ILKC    +  L   L+
Sbjct: 121 YYHMVTQGVLLDISTFHFLIHA--CCKN---FDVKLGSEVHGRILKCGFGRNKSLNNNLM 175

Query: 194 DSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNA 253
             Y K GK      +F+ M  ++VI   +MIS ++ +G   +A ++F + +    V+ + 
Sbjct: 176 GLYSKCGKLKEVCQLFEKMTHRDVISWNTMISCYVLKGMYREALDLFDEMLVSG-VLPDE 234

Query: 254 MIEGYSISIETARKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGK---------- 299
           +     +S     K LE    +H  ++ N  +    L + LVDMY+KCGK          
Sbjct: 235 ITMVSLVSTCAKLKDLEMGKRLHLYIVDNKLWIRGSLLNCLVDMYSKCGKMDEAHGLLSR 294

Query: 300 -----------------------IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
                                  ID AR++FD M ++++ +WT+M+ GY + G   ++LE
Sbjct: 295 CDESEVDVVLWTTLVSGYVKSNKIDKARQLFDKMNERSLVSWTTMMSGYVQGGYYCESLE 354

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           LF  M+   V P+ V  +  LSAC H    D GR +  +    Y M         ++DL 
Sbjct: 355 LFQQMRFENVIPDEVALVTVLSACVHLEDFDLGRSV-HAFIVTYGMLVDGFLGNALLDLY 413

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSS-CR 429
            + G L++AL+   ++P K  +  W ++L   CR
Sbjct: 414 AKCGKLDEALRTFEQLPCKSAAS-WNSMLDGFCR 446



 Score = 50.8 bits (120), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/198 (21%), Positives = 87/198 (43%), Gaps = 29/198 (14%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G+ ++ +I K  +  +  +   L+ ++ KCG ++ A ++F ++ ++ +  +  M+A Y 
Sbjct: 518 HGIWVNVYIEKNEIGIDAMLGTALIDMYGKCGCVEMAYEIFTQIIEKNVFVWTAMMAAYA 577

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
             GQ  E++ L  ++   G +PD  TF  +L A +                H  ++    
Sbjct: 578 MEGQALEAIDLYLEMEERGVKPDHVTFIALLAACS----------------HGGLVDEGY 621

Query: 183 KADDVL------------YTALVDSYVKGGK-TSYARIVFDMMLEKNVICSTSMISGFMS 229
           K  + L            Y  +VD   + G      + +  M +E +V   +S++    S
Sbjct: 622 KYFNKLRSFYNIIPTIHHYGCMVDLLGRVGHLEETVKFIERMPIEPDVSIWSSLMRACRS 681

Query: 230 QGFVEDAEEIFRKTVEKD 247
              VE AE+ F++ +E D
Sbjct: 682 HHNVELAEQAFKQLIEID 699


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 161/460 (35%), Positives = 263/460 (57%), Gaps = 19/460 (4%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           + +T T+  S+    ++ D    G +IH  +  +G + ++ +S  L+ ++ KCG L+ A 
Sbjct: 206 DSVTITTAISSCARLLDLDR---GREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAI 262

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           ++F+++P +T+ A+N MI GY   G     + L +++ S G +P   T +  L A  C +
Sbjct: 263 EVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMA--CSQ 320

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           S   L    G+ VH  I++  ++ D  L ++L+D Y K GK   A  +F +M +   +  
Sbjct: 321 SAQLLE---GKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSW 377

Query: 221 TSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLI 276
             MISG++++G + DA  +F    +  VE D + + +++   S  +    K  E+H  ++
Sbjct: 378 NVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAACS-QLAALEKGREIHNLIV 436

Query: 277 -KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
            +N+   +V +G AL+DMYAKCG +++A  VF  + ++++ +WTSMI  YG +G   +AL
Sbjct: 437 ERNLGNNEVVMG-ALLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEAL 495

Query: 336 ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDL 395
           ELF  M +  V+P+ VTFL  LSAC HAGLVD G   F  M   Y + P++EHY+C++ L
Sbjct: 496 ELFAEMLQSNVKPDRVTFLAILSACSHAGLVDDGLYHFNQMINVYGIIPRIEHYSCLITL 555

Query: 396 LGRAGSLEQALKFVLEMPEKPNS-DVWAALLSSCRLHDDVEMA-NIAANEIFKLNANDRP 453
           LGRAG L +A + +   PE  +   + + L S+CRLH ++++   IA N I K    D  
Sbjct: 556 LGRAGRLHEAYEILQSNPEISDDFQLLSTLFSACRLHKNLDLGVEIAENLIDK--DPDDS 613

Query: 454 GAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             Y+ LSN  A+ GKWD V  +R KMK  G+ K+ GCSW+
Sbjct: 614 STYIILSNMYASFGKWDEVRMVRSKMKDLGLKKNPGCSWI 653



 Score =  165 bits (418), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 114/428 (26%), Positives = 208/428 (48%), Gaps = 12/428 (2%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           + PS L+          G  IH  + K G+  +  +   L+ ++ KC   + A ++FDE+
Sbjct: 108 TYPSVLKACGGLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEM 167

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P + ++ +N +I+ Y ++G+ EE+L     +   G  PD  T +  +  S+C R    L 
Sbjct: 168 PDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAI--SSCAR---LLD 222

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
            + GR +H +++    + D  +  ALVD Y K G+   A  VF+ M  K V+   SMI+G
Sbjct: 223 LDRGREIHKELVNSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMING 282

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE---VHCQLIKNVFFED 283
           +  +G      ++F++   + +      +    ++   + + LE   VH  +I+N    D
Sbjct: 283 YGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPD 342

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
           + L S+L+D+Y KCGK++ A  +F  M +    +W  MI GY   G    AL LF  M +
Sbjct: 343 IFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSK 402

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVDLLGRAGSL 402
             V+P+ +TF   L+AC     ++KGREI   + ER+      +     ++D+  + G++
Sbjct: 403 SFVEPDAITFTSVLAACSQLAALEKGREIHNLIVERNLGNNEVV--MGALLDMYAKCGAV 460

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
           E+A      +PE+ +   W +++++   H  V  A     E+ + N       ++A+ + 
Sbjct: 461 EEAFGVFKCLPER-DLVSWTSMITAYGSHGRVYEALELFAEMLQSNVKPDRVTFLAILSA 519

Query: 463 LAAAGKWD 470
            + AG  D
Sbjct: 520 CSHAGLVD 527



 Score =  151 bits (381), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 115/390 (29%), Positives = 192/390 (49%), Gaps = 14/390 (3%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           + A  L   L+  +NS +   G  +H  +   G++ +  +   L+ L++ C    YA  +
Sbjct: 1   MDARKLIPLLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNV 60

Query: 103 FDELPQR-TLSAYNYMIAGYLKNGQVEESLSLVRKLVS-SGERPDGYTFSMILKASTCCR 160
           FD +     +S  N ++AGY +N   +E+L L  KL+     +PD YT+  +LKA    R
Sbjct: 61  FDVIENPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLR 120

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
             V     LG+M+H  ++K  +  D V+ ++LV  Y K  +   A  +FD M +K+V C 
Sbjct: 121 RVV-----LGQMIHTCLVKEGLMVDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACW 175

Query: 221 TSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLI 276
            ++IS +   G  E+A   F    R   E D V     I   +  ++  R   E+H +L+
Sbjct: 176 NTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDR-GREIHKELV 234

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
            + F  D  + +ALVDMY KCG+++ A  VF+ M  K V  W SMI+GYG  G+    ++
Sbjct: 235 NSGFRMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQ 294

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           LF  M    V+P   T    L AC  +  + +G+ +   + R+  ++P +   + ++DL 
Sbjct: 295 LFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRN-RIQPDIFLNSSLMDLY 353

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
            + G +E A      MP K  +  W  ++S
Sbjct: 354 FKCGKVESAETIFKLMP-KTTTVSWNVMIS 382


>gi|359477907|ref|XP_002270439.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Vitis vinifera]
          Length = 677

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 162/500 (32%), Positives = 244/500 (48%), Gaps = 75/500 (15%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IHA I    +  N+ +  +L+       +L YA  +F       L  +N +I G  +N 
Sbjct: 58  QIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENS 117

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           + E S+S    ++    RPD  T   +LK+         +   LGR +H  ++K  ++ D
Sbjct: 118 RFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAAL-----VDVGLGRCLHGGVMKLGLEFD 172

Query: 186 DVLYTALVDSYVKGGKTSY-----------------------------------ARIVFD 210
             +  +LVD YVK G+  +                                   A  +F+
Sbjct: 173 SFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNVLINGCCKVGDLSKAASLFE 232

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS----------- 259
            M E+N     S+I+GF+  G ++ A E+F +  EK++V +  MI G+S           
Sbjct: 233 AMPERNAGSWNSLINGFVRNGDLDRARELFVQMPEKNVVSWTTMINGFSQNGDHEKALSM 292

Query: 260 -----------------------ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
                                    I   +    +H  L  N F  +  +G+ALVDMYAK
Sbjct: 293 FWRMLEEGVRPNDLTVVSALLACTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAK 352

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG I  A RVF   + K++ TW+ MI G+  +G  +QAL+ F  M+   + P+ V FL  
Sbjct: 353 CGNIKSASRVFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAI 412

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           L+AC H+G VD+G   FESM  DYS++P M+HY  +VDLLGRAG L++AL F+  MP  P
Sbjct: 413 LTACSHSGNVDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINP 472

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
           +  +W AL  +CR H ++EMA + A ++ +L     PG+YV LSN  AA G+W+ V  +R
Sbjct: 473 DFVIWGALFCACRAHKNIEMAELTAEKLLQLEPK-HPGSYVFLSNVYAAVGRWEDVERVR 531

Query: 477 EKMKLRGVLKDTGCSWVGTE 496
             MK RGV KD G S++  E
Sbjct: 532 TLMKNRGVEKDPGWSYIEVE 551



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 70/145 (48%), Gaps = 10/145 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH +++  G + N  I   L+ ++ KCG +K A ++F E   + L  ++ MI G+  
Sbjct: 324 GERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASRVFVETKGKDLLTWSVMIWGWAI 383

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS-NVPLPRNLGRMVHAQILKCDV 182
           +G  +++L    K+ S+G  PD   F  IL A  C  S NV    N       + ++ D 
Sbjct: 384 HGCFDQALQCFVKMKSAGINPDEVIFLAILTA--CSHSGNVDQGLNF-----FESMRLDY 436

Query: 183 KADDVL--YTALVDSYVKGGKTSYA 205
             +  +  YT +VD   + G+   A
Sbjct: 437 SIEPTMKHYTLIVDLLGRAGRLDEA 461


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 148/461 (32%), Positives = 253/461 (54%), Gaps = 14/461 (3%)

Query: 37  DSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGAL 96
           D+L N  T  SL SA     N+    YG  IHA + K G + +  +S  L+ +++K G +
Sbjct: 410 DTLPNQYTICSLLSAA---TNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCV 466

Query: 97  KYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAS 156
               ++++ +  R L ++N  ++G    G  +  L++   ++  G  P+ YTF  IL + 
Sbjct: 467 HDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSC 526

Query: 157 TCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216
           +C         + GR VHA I+K  +  ++ + TAL+D Y K      A + F+ +  ++
Sbjct: 527 SCL-----FDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRD 581

Query: 217 VICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVH 272
           +   T +I+ +      E A   FR+  ++ +          + G S S+ +     ++H
Sbjct: 582 LFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCS-SLASLEGGQQLH 640

Query: 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPN 332
             + K+    D+ +GSALVDMYAKCG +++A  +F+ + +++   W ++I GY +NG  N
Sbjct: 641 SMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGN 700

Query: 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACM 392
           +AL  F MM +  + P+ VTF G LSAC H GLV++G+E F SM RD+ + P ++H ACM
Sbjct: 701 KALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACM 760

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR 452
           VD+LGR G  ++   F+ +M    N+ +W  +L + ++H+++ +   AAN++F+L   + 
Sbjct: 761 VDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEE 820

Query: 453 PGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             +Y+ LSN  A  G+WD V  +R  M  +GV K+ GCSWV
Sbjct: 821 S-SYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWV 860



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 183/370 (49%), Gaps = 14/370 (3%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           IH  I K  + P++++ + L+ ++ KC    YA  +  ++P R + ++  +I G +  G 
Sbjct: 134 IHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGF 193

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
             +S+ L +++ + G  P+ +T +  LKA + C     +  +LG+ +HAQ  K  +  D 
Sbjct: 194 ANDSIYLFQEMQNEGIMPNEFTLATGLKACSLC-----MALDLGKQMHAQAFKLGLLLDL 248

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
            + +ALVD Y K G+   A  +F  M E+N +    +++G+  +G V    ++F   +E 
Sbjct: 249 FVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMEL 308

Query: 247 DI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
           D+         +++G + S +  ++   +H  +IK  +  +  +G  LVDMY+KCG   D
Sbjct: 309 DVKCNEFTLTTVLKGCANS-KNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAID 367

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           A  VF  +++ ++  W+++I    + G   ++++LF +M+     PN  T    LSA  +
Sbjct: 368 AIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATN 427

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
            G +  G+ I   + + Y  +  +     +V +  + G +    K    M ++ +   W 
Sbjct: 428 TGNLQYGQSIHACVWK-YGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDR-DLISWN 485

Query: 423 ALLSSCRLHD 432
           A LS   LHD
Sbjct: 486 AYLSG--LHD 493



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 145/267 (54%), Gaps = 11/267 (4%)

Query: 167 RNLG--RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
           R+LG  + +H  I+K  +  D  L+ +LV+ Y K   ++YAR+V   M +++V+  T++I
Sbjct: 126 RSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALI 185

Query: 225 SGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVF 280
            G +++GF  D+  +F++ ++ + ++ N       +   +   AL    ++H Q  K   
Sbjct: 186 QGLVAEGFANDSIYLFQE-MQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGL 244

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             D+ +GSALVD+YAKCG+I+ A ++F  M ++N  TW  +++GY + G+    L+LFC 
Sbjct: 245 LLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCS 304

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC-MVDLLGRA 399
           M E  V+ N  T    L  C ++  + +G+ I   + +        E   C +VD+  + 
Sbjct: 305 MMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIK--CGYEGNEFIGCGLVDMYSKC 362

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLS 426
           G    A+  V +  +KP+  VW+AL++
Sbjct: 363 GLAIDAIG-VFKTIKKPDIVVWSALIT 388



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 179/377 (47%), Gaps = 24/377 (6%)

Query: 35  NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           N  +L+  L A SL  AL           G ++HA   K G+  +  +   L+ L+ KCG
Sbjct: 212 NEFTLATGLKACSLCMALD---------LGKQMHAQAFKLGLLLDLFVGSALVDLYAKCG 262

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
            ++ A +MF  +P++    +N ++ GY + G V   L L   ++    + + +T + +LK
Sbjct: 263 EIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLK 322

Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE 214
               C ++  L +  G+++H+ I+KC  + ++ +   LVD Y K G    A  VF  + +
Sbjct: 323 G---CANSKNLKQ--GQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKK 377

Query: 215 KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE---- 270
            +++  +++I+    QG  E++ ++F      D +     I    +S  T    L+    
Sbjct: 378 PDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSL-LSAATNTGNLQYGQS 436

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           +H  + K  F  DV + +ALV MY K G + D  ++++ M  +++ +W + + G    G 
Sbjct: 437 IHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGM 496

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
            ++ L +F  M E    PN  TF+  L +C     V  GR++   + ++   +    ++ 
Sbjct: 497 YDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKN---QLDDNNFV 553

Query: 391 C--MVDLLGRAGSLEQA 405
           C  ++D+  +   LE A
Sbjct: 554 CTALIDMYAKCMYLEDA 570


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 148/461 (32%), Positives = 253/461 (54%), Gaps = 14/461 (3%)

Query: 37  DSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGAL 96
           D+L N  T  SL SA     N+    YG  IHA + K G + +  +S  L+ +++K G +
Sbjct: 410 DTLPNQYTICSLLSAA---TNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNGCV 466

Query: 97  KYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAS 156
               ++++ +  R L ++N  ++G    G  +  L++   ++  G  P+ YTF  IL + 
Sbjct: 467 HDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSC 526

Query: 157 TCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216
           +C         + GR VHA I+K  +  ++ + TAL+D Y K      A + F+ +  ++
Sbjct: 527 SCL-----FDVHYGRQVHAHIIKNQLDDNNFVCTALIDMYAKCMYLEDADVAFNRLSVRD 581

Query: 217 VICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVH 272
           +   T +I+ +      E A   FR+  ++ +          + G S S+ +     ++H
Sbjct: 582 LFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCS-SLASLEGGQQLH 640

Query: 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPN 332
             + K+    D+ +GSALVDMYAKCG +++A  +F+ + +++   W ++I GY +NG  N
Sbjct: 641 SMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGN 700

Query: 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACM 392
           +AL  F MM +  + P+ VTF G LSAC H GLV++G+E F SM RD+ + P ++H ACM
Sbjct: 701 KALTAFRMMLDEGISPDGVTFTGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACM 760

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR 452
           VD+LGR G  ++   F+ +M    N+ +W  +L + ++H+++ +   AAN++F+L   + 
Sbjct: 761 VDILGRVGKFDELEDFIQKMQLSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEE 820

Query: 453 PGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             +Y+ LSN  A  G+WD V  +R  M  +GV K+ GCSWV
Sbjct: 821 S-SYILLSNIFATEGRWDDVKRVRSLMSSKGVKKEPGCSWV 860



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 183/370 (49%), Gaps = 14/370 (3%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           IH  I K  + P++++ + L+ ++ KC    YA  +  ++P R + ++  +I G +  G 
Sbjct: 134 IHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGF 193

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
             +S+ L +++ + G  P+ +T +  LKA + C     +  +LG+ +HAQ  K  +  D 
Sbjct: 194 ANDSIYLFQEMQNEGIMPNEFTLATGLKACSLC-----MALDLGKQMHAQAFKLGLLLDL 248

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
            + +ALVD Y K G+   A  +F  M E+N +    +++G+  +G V    ++F   +E 
Sbjct: 249 FVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMEL 308

Query: 247 DI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
           D+         +++G + S +  ++   +H  +IK  +  +  +G  LVDMY+KCG   D
Sbjct: 309 DVKCNEFTLTTVLKGCANS-KNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAID 367

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           A  VF  +++ ++  W+++I    + G   ++++LF +M+     PN  T    LSA  +
Sbjct: 368 AIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATN 427

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
            G +  G+ I   + + Y  +  +     +V +  + G +    K    M ++ +   W 
Sbjct: 428 TGNLQYGQSIHACVWK-YGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDR-DLISWN 485

Query: 423 ALLSSCRLHD 432
           A LS   LHD
Sbjct: 486 AYLSG--LHD 493



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 79/267 (29%), Positives = 145/267 (54%), Gaps = 11/267 (4%)

Query: 167 RNLG--RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
           R+LG  + +H  I+K  +  D  L+ +LV+ Y K   ++YAR+V   M +++V+  T++I
Sbjct: 126 RSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARLVLAKMPDRDVVSWTALI 185

Query: 225 SGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVF 280
            G +++GF  D+  +F++ ++ + ++ N       +   +   AL    ++H Q  K   
Sbjct: 186 QGLVAEGFANDSIYLFQE-MQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGL 244

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             D+ +GSALVD+YAKCG+I+ A ++F  M ++N  TW  +++GY + G+    L+LFC 
Sbjct: 245 LLDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCS 304

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC-MVDLLGRA 399
           M E  V+ N  T    L  C ++  + +G+ I   + +        E   C +VD+  + 
Sbjct: 305 MMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIK--CGYEGNEFIGCGLVDMYSKC 362

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLS 426
           G    A+  V +  +KP+  VW+AL++
Sbjct: 363 GLAIDAIG-VFKTIKKPDIVVWSALIT 388



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 93/377 (24%), Positives = 179/377 (47%), Gaps = 24/377 (6%)

Query: 35  NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           N  +L+  L A SL  AL           G ++HA   K G+  +  +   L+ L+ KCG
Sbjct: 212 NEFTLATGLKACSLCMALD---------LGKQMHAQAFKLGLLLDLFVGSALVDLYAKCG 262

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
            ++ A +MF  +P++    +N ++ GY + G V   L L   ++    + + +T + +LK
Sbjct: 263 EIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLK 322

Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE 214
               C ++  L +  G+++H+ I+KC  + ++ +   LVD Y K G    A  VF  + +
Sbjct: 323 G---CANSKNLKQ--GQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKK 377

Query: 215 KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE---- 270
            +++  +++I+    QG  E++ ++F      D +     I    +S  T    L+    
Sbjct: 378 PDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSL-LSAATNTGNLQYGQS 436

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           +H  + K  F  DV + +ALV MY K G + D  ++++ M  +++ +W + + G    G 
Sbjct: 437 IHACVWKYGFETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGM 496

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
            ++ L +F  M E    PN  TF+  L +C     V  GR++   + ++   +    ++ 
Sbjct: 497 YDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIKN---QLDDNNFV 553

Query: 391 C--MVDLLGRAGSLEQA 405
           C  ++D+  +   LE A
Sbjct: 554 CTALIDMYAKCMYLEDA 570


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 151/438 (34%), Positives = 242/438 (55%), Gaps = 11/438 (2%)

Query: 66   KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
            +IH H  KTG   ++ ++  L+ ++ K G ++ A  +F       L+ +N M+ GY+   
Sbjct: 1027 QIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGN 1086

Query: 126  QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              +++L L   +  SGE+ D  T +   KA  C      +  + G+ +HA  +K    +D
Sbjct: 1087 DGKKALELFSLIHKSGEKSDQITLATAAKACGCL-----VLLDQGKQIHAHAIKAGFDSD 1141

Query: 186  DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT-- 243
              + + ++D Y+K G    A IVF+ +   + +  TSMISG +  G  + A  I+ +   
Sbjct: 1142 LHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQ 1201

Query: 244  --VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
              V  D   +  +I+  S  +    +  ++H  +IK     D  +G++LVDMYAKCG I+
Sbjct: 1202 SRVMPDEYTFATLIKASSC-VTALEQGRQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIE 1260

Query: 302  DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            DA R+F  M  +N+  W +M+ G  ++GN  +A+ LF  M+   ++P+ V+F+G LSAC 
Sbjct: 1261 DAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACS 1320

Query: 362  HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
            HAGL  +  E   SM  DY ++P++EHY+C+VD LGRAG +++A K +  MP K ++ + 
Sbjct: 1321 HAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASIN 1380

Query: 422  AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
             ALL +CR+  DVE     A  +F L   D   AYV LSN  AAA +WD VT+ R+ MK 
Sbjct: 1381 RALLGACRIQGDVETGKRVAARLFALEPFD-SAAYVLLSNIYAAANRWDDVTDARKMMKR 1439

Query: 482  RGVLKDTGCSWVGTESGL 499
            + V KD G SW+  ++ L
Sbjct: 1440 KNVKKDPGFSWIDVKNML 1457



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 107/414 (25%), Positives = 203/414 (49%), Gaps = 25/414 (6%)

Query: 35   NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
            N + L+    A +L   L     +D    G ++H    K+G+  + +++  L+ ++ K G
Sbjct: 894  NMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMG 953

Query: 95   ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
               +A ++F+++    L ++N MI+   ++   EES++L   L+  G +PD +T + +L+
Sbjct: 954  CAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLR 1013

Query: 155  ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE 214
            A +     +    N+ R +H   LK    AD  + T L+D Y K GK   A  +F    +
Sbjct: 1014 ACSSLIDGL----NISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDD 1069

Query: 215  KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL----- 269
             ++ C  +M+ G++     + A E+F        +++ +  +   I++ TA KA      
Sbjct: 1070 LDLACWNAMMFGYIIGNDGKKALELFS-------LIHKSGEKSDQITLATAAKACGCLVL 1122

Query: 270  -----EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
                 ++H   IK  F  D+ + S ++DMY KCG + +A  VF+++   +   WTSMI G
Sbjct: 1123 LDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISG 1182

Query: 325  YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES-MERDYSMK 383
               NGN +QAL ++  M++  V P+  TF   + A      +++GR++  + ++ D    
Sbjct: 1183 CVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHANVIKLDCVSD 1242

Query: 384  PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
            P +     +VD+  + G++E A +   +M  + N  +W A+L     H + E A
Sbjct: 1243 PFVG--TSLVDMYAKCGNIEDAYRLFKKMNVR-NIALWNAMLVGLAQHGNAEEA 1293



 Score =  108 bits (269), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 69/251 (27%), Positives = 125/251 (49%), Gaps = 9/251 (3%)

Query: 64   GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
            G +IHAH  K G   + +++  +L +++KCG +  AG +F+ +      A+  MI+G + 
Sbjct: 1126 GKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVD 1185

Query: 124  NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            NG  +++L +  ++  S   PD YTF+ ++KAS+C  +        GR +HA ++K D  
Sbjct: 1186 NGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTA-----LEQGRQLHANVIKLDCV 1240

Query: 184  ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +D  + T+LVD Y K G    A  +F  M  +N+    +M+ G    G  E+A  +F+  
Sbjct: 1241 SDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSM 1300

Query: 244  ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
                +E D V +  ++   S +  T+     +H          +++  S LVD   + G 
Sbjct: 1301 KSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGL 1360

Query: 300  IDDARRVFDHM 310
            + +A +V + M
Sbjct: 1361 VQEADKVIETM 1371



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/463 (20%), Positives = 188/463 (40%), Gaps = 83/463 (17%)

Query: 44   TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
            T  +L   L+  +NS   +    +H +  K G++ +  +S  L+ ++ KCG ++ A  +F
Sbjct: 726  TRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLF 785

Query: 104  DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
            D + +R +  +N M+ GY++ G  +E+  L  +   SG RPD ++  +IL   +    N 
Sbjct: 786  DWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGVS--EVNW 843

Query: 164  PLPRNLGRMVHAQILKCDVKAD-------------------------------------D 186
               + L   V A   K  +  D                                     D
Sbjct: 844  DEGKWLADQVQAYAAKLSLSDDNPDVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYD 903

Query: 187  VLYTALVDSYVKG------GKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
             +   +V + V G      GK  +  I     L+ +V  + S+++ +   G    A E+F
Sbjct: 904  AVTLLVVLAAVAGTDDLELGKQVHG-IAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVF 962

Query: 241  RKTVEKDIVVYNAMI----------EGYSISIETARKAL--------------------- 269
                  D++ +N+MI          E  ++ I+   + L                     
Sbjct: 963  NDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGL 1022

Query: 270  ----EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
                ++H   +K     D  + + L+D+Y+K GK+++A  +F +    ++  W +M+ GY
Sbjct: 1023 NISRQIHVHALKTGNIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGY 1082

Query: 326  GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
                +  +ALELF ++ +   + + +T   A  ACG   L+D+G++I     +       
Sbjct: 1083 IIGNDGKKALELFSLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIK-AGFDSD 1141

Query: 386  MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
            +   + ++D+  + G +  A   V      P+   W +++S C
Sbjct: 1142 LHVNSGILDMYIKCGDMVNA-GIVFNYISAPDDVAWTSMISGC 1183



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 85/333 (25%), Positives = 139/333 (41%), Gaps = 46/333 (13%)

Query: 52  LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL 111
           L+  I++     G   HA I  +G   +  +S  LL ++ KCG+L  A Q+FD  P+R L
Sbjct: 628 LRTAISTHNLLLGKCTHARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDL 687

Query: 112 SAYNYMIAGYL-----KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
             +N ++  Y       +G  +E L L R L +S       T + +LK   C  S     
Sbjct: 688 VTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLK--LCLNSGCLWA 745

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
                 VH   +K  ++ D  +  ALV+ Y K G+   AR++FD M E++V+    M+ G
Sbjct: 746 ---AEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKG 802

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL---EVHCQLIKN----V 279
           ++  G  ++A ++F                      E  R  L   E   QLI N    V
Sbjct: 803 YVQLGLEKEAFQLFS---------------------EFHRSGLRPDEFSVQLILNGVSEV 841

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
            +++ K  +  V  YA    + D           +VF W   +      G+   A+E F 
Sbjct: 842 NWDEGKWLADQVQAYAAKLSLSD--------DNPDVFCWNKKLSECLWAGDNWGAIECFV 893

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
            M    +  + VT L  L+A      ++ G+++
Sbjct: 894 NMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQV 926


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 150/436 (34%), Positives = 249/436 (57%), Gaps = 16/436 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H  I + G + +  +   L+ L+ KCG ++ A  +F+ L  R + ++  MI+GY +
Sbjct: 188 GKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQ 247

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG   E+L +  ++     +PD      +L+A T            G+ +H  ++K  ++
Sbjct: 248 NGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVED-----LEQGKSIHGCVVKMGLE 302

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +  L  +L   Y K G+   AR  FD M   NV+   +MISG+   G+  +A  +F++ 
Sbjct: 303 FEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEM 362

Query: 244 VEKDI-----VVYNAMIEGYSI-SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           + K+I      V +A++    + S++ A+   +    + K  +  DV + +AL+DM+AKC
Sbjct: 363 ISKNIRTDSITVRSAILACAQVGSLDLAKWMGDY---INKTEYRNDVFVNTALIDMFAKC 419

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G +D AR VFD    K+V  W++MI GYG +G    A++LF  M++  V PN VTF+G L
Sbjct: 420 GSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLL 479

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           +AC H+GLV++G E+F SM + Y ++ + +HYAC+VDLLGR+G L +A  F+  MP +P 
Sbjct: 480 TACNHSGLVEEGWELFHSM-KYYGIEARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPG 538

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
             VW ALL +C+++  V +   AA ++F L+  +  G YV LSN  A++  WDSV ++R 
Sbjct: 539 VSVWGALLGACKIYRHVTLGEYAAEQLFSLDPFN-TGHYVQLSNLYASSRLWDSVAKVRI 597

Query: 478 KMKLRGVLKDTGCSWV 493
            M+ +G+ KD G S +
Sbjct: 598 LMREKGLSKDLGYSLI 613



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 106/370 (28%), Positives = 192/370 (51%), Gaps = 12/370 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IHA +  +G+  +  +  K +      G + YA ++FDE P+ ++  +N +I GY  + 
Sbjct: 89  QIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHN 148

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              +++ +  ++ +SG  PDG+T   +LKA     S VP+   +G+ VH QI +   ++D
Sbjct: 149 FFGDAIEMYSRMQASGVNPDGFTLPCVLKAC----SGVPV-LEVGKRVHGQIFRLGFESD 203

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----R 241
             +   LV  Y K G+   ARIVF+ + ++N++  TSMISG+   G   +A  IF    +
Sbjct: 204 VFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQ 263

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
           + V+ D +   +++  Y+  +E   +   +H  ++K     +  L  +L  MYAKCG++ 
Sbjct: 264 RNVKPDWIALVSVLRAYT-DVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVM 322

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            AR  FD M+  NV  W +MI GY KNG  N+A+ LF  M    ++ + +T   A+ AC 
Sbjct: 323 VARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACA 382

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
             G +D  + + + + +         + A ++D+  + GS++ A + V +     +  VW
Sbjct: 383 QVGSLDLAKWMGDYINKTEYRNDVFVNTA-LIDMFAKCGSVDLARE-VFDRTLDKDVVVW 440

Query: 422 AALLSSCRLH 431
           +A++    LH
Sbjct: 441 SAMIVGYGLH 450



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/194 (30%), Positives = 100/194 (51%), Gaps = 5/194 (2%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +L S L+ Y + +    G  IH  + K G++   ++ I L  ++ KCG +  A   FD++
Sbjct: 272 ALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVMVARSFFDQM 331

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
               +  +N MI+GY KNG   E++ L ++++S   R D  T   +  A   C     L 
Sbjct: 332 EIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSIT---VRSAILACAQVGSL- 387

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
            +L + +   I K + + D  + TAL+D + K G    AR VFD  L+K+V+  ++MI G
Sbjct: 388 -DLAKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMIVG 446

Query: 227 FMSQGFVEDAEEIF 240
           +   G  +DA ++F
Sbjct: 447 YGLHGRGQDAIDLF 460


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 144/435 (33%), Positives = 238/435 (54%), Gaps = 12/435 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH    K  +  + +    L+ ++ KCG    A   F+ +  R +  +N +I GY +
Sbjct: 449 GKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQ 508

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G    ++ +  KL  S   PD  T   ++ A  C   N     + G  +H  I+K   +
Sbjct: 509 IGDPYNAIDMFYKLRLSAINPDAGTMVGVVPA--CALLN---DLDQGTCIHGLIVKLGFE 563

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMM-LEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           +D  +  AL+D Y K G    A  +F+     K+ +    +I+ +M  G  ++A   F +
Sbjct: 564 SDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQ 623

Query: 243 ----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
                   + V + +++   +  +   R+ +  H  +I+  F  +  +G++L+DMYAKCG
Sbjct: 624 MRLENFHPNSVTFVSVLPA-AAYLAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCG 682

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           ++D + ++F+ M  K+  +W +M+ GY  +G+ ++A+ LF +MQE  VQ + V+F+  LS
Sbjct: 683 QLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLS 742

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC HAGLV++GR+IF SM   Y +KP +EHYACMVDLLGRAG  ++ L F+  MP +P++
Sbjct: 743 ACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDA 802

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            VW ALL SCR+H +V++  +A + + KL   + P  +V LS+  A +G+W    + R K
Sbjct: 803 GVWGALLGSCRMHSNVKLGEVALDHLVKLEPRN-PAHFVVLSSIYAQSGRWADAGKARSK 861

Query: 479 MKLRGVLKDTGCSWV 493
           M   G+ K  GCSWV
Sbjct: 862 MNDLGLKKTPGCSWV 876



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 160/312 (51%), Gaps = 10/312 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+  H  I + G++ +  I   L+ ++ K G LK A ++FD++P+R + A+N MIAG  +
Sbjct: 148 GVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQ 207

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +    E++   R +   G  P   +  + L    C  SN+ L R+    +H  + + D  
Sbjct: 208 SEDPCEAVDFFRSMQLVGVEPSSVSL-LNLFPGICKLSNIELCRS----IHGYVFRRDFS 262

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +   +   L+D Y K G    AR VFD M++++ +   +M++G+   G   +  E+F K 
Sbjct: 263 S--AVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKM 320

Query: 244 VEKDIVVYN-AMIEGYSISIETA--RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
              ++ +   + +  +  + ET    K  E+H   ++     D+ + + L+ MYAKCG+ 
Sbjct: 321 KLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGET 380

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           + A+++F  +Q +++  W+++I    + G P +AL LF  MQ   ++PN VT +  L AC
Sbjct: 381 EKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPAC 440

Query: 361 GHAGLVDKGREI 372
               L+  G+ I
Sbjct: 441 ADLSLLKLGKSI 452



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/363 (31%), Positives = 172/363 (47%), Gaps = 28/363 (7%)

Query: 18  RHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVK 77
           R +T +    +  P L +  + +N L    L S+ +H      P   L+IHA I  +G K
Sbjct: 9   RSFTSIATAASEFPSLSS-STYTNYLHYPRLLSSCKHL----NPL--LQIHAQIIVSGFK 61

Query: 78  PNTNIS--IKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVR 135
            + +I+  I L  L  KC     A  +FD  P  +   +N MI  Y ++ Q  E+L +  
Sbjct: 62  HHHSITHLINLYSLFHKC---DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYY 118

Query: 136 KLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDS 195
            +V  G  PD YTF+ +LKA T       L    G   H +I +  ++ D  +   LVD 
Sbjct: 119 CMVEKGLEPDKYTFTFVLKACTG-----ALNLQEGVWFHGEIDRRGLERDVFIGAGLVDM 173

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVY 251
           Y K G    AR VFD M +++V+   +MI+G        +A + FR      VE   V  
Sbjct: 174 YSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSL 233

Query: 252 NAMIEGYS--ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309
             +  G     +IE  R    +H  + +  F   V  G  L+D+Y+KCG +D ARRVFD 
Sbjct: 234 LNLFPGICKLSNIELCR---SIHGYVFRRDFSSAVSNG--LIDLYSKCGDVDVARRVFDQ 288

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKG 369
           M  ++  +W +M+ GY  NG   + LELF  M+   V+ N V+ + A  A      ++KG
Sbjct: 289 MVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKG 348

Query: 370 REI 372
           +EI
Sbjct: 349 KEI 351



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 183/373 (49%), Gaps = 13/373 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH    +  +  +  ++  L++++ KCG  + A Q+F  L  R L A++ +IA  ++
Sbjct: 348 GKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQ 407

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G  EE+LSL +++ +   +P+  T   IL A     +++ L + LG+ +H   +K D+ 
Sbjct: 408 TGYPEEALSLFQEMQNQKMKPNRVTLMSILPAC----ADLSLLK-LGKSIHCFTVKADMD 462

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK- 242
           +D    TALV  Y K G  + A   F+ M  ++++   S+I+G+   G   +A ++F K 
Sbjct: 463 SDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKL 522

Query: 243 ---TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               +  D      ++   ++ +    +   +H  ++K  F  D  + +AL+DMYAKCG 
Sbjct: 523 RLSAINPDAGTMVGVVPACAL-LNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGS 581

Query: 300 IDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           +  A  +F+     K+  TW  +I  Y +NG+  +A+  F  M+     PN VTF+  L 
Sbjct: 582 LPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLP 641

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           A  +     +G      + +   +   +   + ++D+  + G L+ + K   EM  K ++
Sbjct: 642 AAAYLAAFREGMAFHACIIQMGFLSNTLVGNS-LIDMYAKCGQLDYSEKLFNEMDHK-DT 699

Query: 419 DVWAALLSSCRLH 431
             W A+LS   +H
Sbjct: 700 VSWNAMLSGYAVH 712



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 13/170 (7%)

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
           L++H Q+I + F     + + L+++Y+   K D AR VFD     +   W SMI  Y ++
Sbjct: 49  LQIHAQIIVSGFKHHHSI-THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRS 107

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHA-----GLVDKGREIFESMERDYSMK 383
              N+ALE++  M E  ++P+  TF   L AC  A     G+   G      +ERD  + 
Sbjct: 108 KQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIG 167

Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDD 433
                 A +VD+  + G L++A +   +MP++ +   W A+++     +D
Sbjct: 168 ------AGLVDMYSKMGDLKRAREVFDKMPKR-DVVAWNAMIAGLSQSED 210


>gi|224131918|ref|XP_002328140.1| predicted protein [Populus trichocarpa]
 gi|222837655|gb|EEE76020.1| predicted protein [Populus trichocarpa]
          Length = 534

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 148/418 (35%), Positives = 245/418 (58%), Gaps = 23/418 (5%)

Query: 84  IKLLI-LHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE 142
           I +LI +++K G L  A  +FD++P R + ++  MI+ Y      +++L  +  ++  G 
Sbjct: 3   INILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREGV 62

Query: 143 RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKT 202
           RP+ +T+S +L+A   C     L     R +H  I+K  + +D  + +AL+D Y + G+ 
Sbjct: 63  RPNMFTYSSVLRA---CDGLFNL-----RQLHCCIIKIGLDSDVFVRSALIDVYSRWGEL 114

Query: 203 SYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE------ 256
             A  VFD M+  +++  +S+I+GF      ++A  +F++      +     +       
Sbjct: 115 ENALRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRAC 174

Query: 257 -GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
            G ++ +E  R   +VH  ++K  + +D+ L +AL+DMY KCG ++DA  VF  M +K+V
Sbjct: 175 TGLAL-LELGR---QVHVHVLK--YDQDLILNNALLDMYCKCGSLEDANAVFVRMVEKDV 228

Query: 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES 375
            +W++MI G  +NG   +AL+LF  M+   ++PNYVT +G L AC HAGLV++G   F S
Sbjct: 229 ISWSTMIAGLAQNGYSKEALKLFESMKVLGIKPNYVTIVGVLFACSHAGLVEEGLYYFHS 288

Query: 376 MERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVE 435
           M+  + + P  EHY CM+DLLGRAG L +A+  + EM  +P++  W ALL++CR+H +V+
Sbjct: 289 MKELFGIDPGREHYGCMIDLLGRAGRLSEAVDLINEMECEPDAVTWRALLNACRVHRNVD 348

Query: 436 MANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           +A  AA +I +L+  D  G YV LSN  A   +W+ V E+R  M  RG+ K+ GCSW+
Sbjct: 349 VAIHAAKQILRLDPQD-AGTYVLLSNIYANTQRWNDVAEVRRTMTNRGIKKEPGCSWI 405



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 129/245 (52%), Gaps = 16/245 (6%)

Query: 188 LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE----IFRKT 243
           L   L++ YVK G    A+ VFD M ++NV+  T+MIS + +    + A E    + R+ 
Sbjct: 2   LINILINMYVKFGLLHDAQDVFDKMPDRNVVSWTTMISAYSAAKLNDKALEFLVLMLREG 61

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
           V  ++  Y++++     + +      ++HC +IK     DV + SAL+D+Y++ G++++A
Sbjct: 62  VRPNMFTYSSVLR----ACDGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENA 117

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
            RVFD M   ++  W+S+I G+ +N + ++AL LF  M+         T    L AC   
Sbjct: 118 LRVFDEMVTGDLVVWSSIIAGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACTGL 177

Query: 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV--W 421
            L++ GR++   + + Y     + +   ++D+  + GSLE A    + M EK   DV  W
Sbjct: 178 ALLELGRQVHVHVLK-YDQDLILNN--ALLDMYCKCGSLEDANAVFVRMVEK---DVISW 231

Query: 422 AALLS 426
           + +++
Sbjct: 232 STMIA 236



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 83/302 (27%), Positives = 144/302 (47%), Gaps = 37/302 (12%)

Query: 59  DTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMI 118
           D  F   ++H  I K G+  +  +   L+ ++ + G L+ A ++FDE+    L  ++ +I
Sbjct: 77  DGLFNLRQLHCCIIKIGLDSDVFVRSALIDVYSRWGELENALRVFDEMVTGDLVVWSSII 136

Query: 119 AGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
           AG+ +N   +E+L L +++  +G      T + +L+A T     + L   LGR VH  +L
Sbjct: 137 AGFAQNSDGDEALRLFKRMKRAGFLAQQTTLTSVLRACT----GLALL-ELGRQVHVHVL 191

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
           K D   D +L  AL+D Y K G    A  VF  M+EK+VI  ++MI+G    G+ ++A +
Sbjct: 192 KYD--QDLILNNALLDMYCKCGSLEDANAVFVRMVEKDVISWSTMIAGLAQNGYSKEALK 249

Query: 239 IFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
           +F       I      I G   +          H  L++    E +    ++ +++    
Sbjct: 250 LFESMKVLGIKPNYVTIVGVLFACS--------HAGLVE----EGLYYFHSMKELFG--- 294

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            ID  R   +H        +  MID  G+ G  ++A++L   M EC  +P+ VT+   L+
Sbjct: 295 -IDPGR---EH--------YGCMIDLLGRAGRLSEAVDLINEM-EC--EPDAVTWRALLN 339

Query: 359 AC 360
           AC
Sbjct: 340 AC 341


>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
          Length = 734

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 143/437 (32%), Positives = 240/437 (54%), Gaps = 11/437 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H+H+ +  +  N  +   +  ++++CG L+ A  +FD +  +    +  ++ GY +
Sbjct: 207 GKQMHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQ 266

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
             ++E +L L  ++   G   D + FS++LK   CC        ++G+ +H+ I+K   +
Sbjct: 267 AKKLEVALELFARMAMEGVELDEFVFSIVLK--VCCXLE---DWDMGKQIHSHIVKLGXE 321

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           ++  + T LVD YVK G    A   F  + E N +  +++ISGF   G +ED  +IF  +
Sbjct: 322 SEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIF-TS 380

Query: 244 VEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           +  + VV N+ I         A+  L    + H   IK      +   SA+V MY+KCG+
Sbjct: 381 LRSEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGLVSYLYGESAMVTMYSKCGR 440

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +D ARR F+ + + +   WT++I GY  +GN  +AL  F  MQ   V+PN VTF+  L+A
Sbjct: 441 LDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTA 500

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H+GLV + ++   SM RDY +KP ++HY CM+D   RAG L +AL+ +  MP +P++ 
Sbjct: 501 CSHSGLVAEAKQYLGSMSRDYGVKPTIDHYDCMIDTYSRAGLLXEALELINRMPFEPDAM 560

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
            W +LL  C  H D+++  IAA  +F+L+  D  G Y+ L N  +A GKW+    +R+ M
Sbjct: 561 SWKSLLGGCWAHCDLKLGKIAAENLFRLDPGDTAG-YILLFNLYSAFGKWEEAGHVRKLM 619

Query: 480 KLRGVLKDTGCSWVGTE 496
             R + K+  CSW+  +
Sbjct: 620 AERELKKEVSCSWISVK 636



 Score =  143 bits (360), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 93/379 (24%), Positives = 192/379 (50%), Gaps = 14/379 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH  + +T   P+ +I   LL ++  CG+     ++FDE+  + L ++  +I+ Y K
Sbjct: 106 GRLIHDRLRRTVKNPSGSIENCLLRMYCDCGSXIDVQKVFDEMLMKNLVSWVIVISAYAK 165

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG++E+++ L   + +SG RP+   +  +L++   C    P    LG+ +H+ +++  + 
Sbjct: 166 NGELEKAIRLFSDMQASGIRPNSAVYMSLLQS---CLG--PSFLELGKQMHSHVIRAQLN 220

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           A+  + TA+ + YV+ G    A++VFD M  +N +  T ++ G+     +E A E+F + 
Sbjct: 221 ANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARM 280

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               VE D  V++ +++     +E      ++H  ++K     +V +G+ LVD Y KCG 
Sbjct: 281 AMEGVELDEFVFSIVLK-VCCXLEDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGD 339

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I+ A R F  + + N  +W+++I G+ ++G     +++F  ++   V  N   +     A
Sbjct: 340 IESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQA 399

Query: 360 CGHAGLVDKGREIF-ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           C     ++ G +   ++++R   +   +   + MV +  + G L+ A +   E  ++P++
Sbjct: 400 CAAQANLNMGSQAHGDAIKR--GLVSYLYGESAMVTMYSKCGRLDYARR-AFESIDEPDA 456

Query: 419 DVWAALLSSCRLHDDVEMA 437
             W A++S    H +   A
Sbjct: 457 VAWTAIISGYAYHGNAAEA 475



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 49/200 (24%), Positives = 93/200 (46%), Gaps = 7/200 (3%)

Query: 230 QGFVEDAEEIFRKTVEKDIVV----YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
           QG +++A +  ++  + D+ V    Y  + E     + +      +H +L + V      
Sbjct: 65  QGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACG-KLRSLADGRLIHDRLRRTVKNPSGS 123

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           + + L+ MY  CG   D ++VFD M  KN+ +W  +I  Y KNG   +A+ LF  MQ   
Sbjct: 124 IENCLLRMYCDCGSXIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASG 183

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
           ++PN   ++  L +C     ++ G+++   + R   +   +     + ++  R G LE A
Sbjct: 184 IRPNSAVYMSLLQSCLGPSFLELGKQMHSHVIRA-QLNANITVETAICNMYVRCGWLEGA 242

Query: 406 LKFVLEMPEKPNSDVWAALL 425
            K V +  +  N+  W  L+
Sbjct: 243 -KLVFDGMDAQNAVTWTGLM 261


>gi|334185836|ref|NP_001190038.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
 gi|218546754|sp|P0C899.1|PP271_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g49142
 gi|332644983|gb|AEE78504.1| tetratricopeptide repeat-like family protein [Arabidopsis thaliana]
          Length = 686

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 156/498 (31%), Positives = 256/498 (51%), Gaps = 77/498 (15%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +H+ I    ++ N+++ +KL+  +     +  A ++FDE+P+R +   N MI  Y+ NG 
Sbjct: 61  VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGF 120

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
             E + +   +     RPD YTF  +LKA +C  + V     +GR +H    K  + +  
Sbjct: 121 YGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIV-----IGRKIHGSATKVGLSSTL 175

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI------- 239
            +   LV  Y K G  S AR+V D M  ++V+   S++ G+      +DA E+       
Sbjct: 176 FVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESV 235

Query: 240 ------------------------------FRKTVEKDIVVYNAMIEGY----------- 258
                                         F K  +K +V +N MI  Y           
Sbjct: 236 KISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVE 295

Query: 259 -------------SISIETARKAL----------EVHCQLIKNVFFEDVKLGSALVDMYA 295
                        ++SI +   A           ++H  + +     ++ L +AL+DMYA
Sbjct: 296 LYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYA 355

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KCG ++ AR VF++M+ ++V +WT+MI  YG +G    A+ LF  +Q+  + P+ + F+ 
Sbjct: 356 KCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVT 415

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            L+AC HAGL+++GR  F+ M   Y + P++EH ACMVDLLGRAG +++A +F+ +M  +
Sbjct: 416 TLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSME 475

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
           PN  VW ALL +CR+H D ++  +AA+++F+L A ++ G YV LSN  A AG+W+ VT +
Sbjct: 476 PNERVWGALLGACRVHSDTDIGLLAADKLFQL-APEQSGYYVLLSNIYAKAGRWEEVTNI 534

Query: 476 REKMKLRGVLKDTGCSWV 493
           R  MK +G+ K+ G S V
Sbjct: 535 RNIMKSKGLKKNPGASNV 552



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 10/202 (4%)

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
           P  R L R VH++I+  D++ +  L   L+ +Y      + AR VFD + E+NVI    M
Sbjct: 53  PDIRTL-RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVM 111

Query: 224 ISGFMSQGFVEDAEEIFRK----TVEKDIVVYNAMIEGYSIS--IETARKALEVHCQLIK 277
           I  +++ GF  +  ++F       V  D   +  +++  S S  I   RK   +H    K
Sbjct: 112 IRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRK---IHGSATK 168

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
                 + +G+ LV MY KCG + +AR V D M +++V +W S++ GY +N   + ALE+
Sbjct: 169 VGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEV 228

Query: 338 FCMMQECCVQPNYVTFLGALSA 359
              M+   +  +  T    L A
Sbjct: 229 CREMESVKISHDAGTMASLLPA 250



 Score = 55.8 bits (133), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 58/113 (51%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           A S+ S L    ++     G KIH +I +  + PN  +   L+ ++ KCG L+ A  +F+
Sbjct: 309 AVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFE 368

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
            +  R + ++  MI+ Y  +G+  ++++L  KL  SG  PD   F   L A +
Sbjct: 369 NMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACS 421


>gi|357483509|ref|XP_003612041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513376|gb|AES94999.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 518

 Score =  266 bits (681), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 152/462 (32%), Positives = 245/462 (53%), Gaps = 42/462 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILH--LKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           +IH  + K G   +     +LL  +  ++   L YA  +FD +       +N MI  Y  
Sbjct: 29  QIHGQLLKKGTIRHKLTVSRLLTTYASMEFSNLTYARMVFDRISSPNTVMWNTMIRAYSN 88

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +   EE+L L  +++      + YTF  +LKA   C +   L       +H QI+K    
Sbjct: 89  SNDPEEALLLYHQMLHHSIPHNAYTFPFLLKA---CSALSALAET--HQIHVQIIKRGFG 143

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           ++     +L+  Y   G    A ++FD++  ++++   +MI G++  G VE A +IF+  
Sbjct: 144 SEVYATNSLLRVYAISGSIKSAHVLFDLLPSRDIVSWNTMIDGYIKCGNVEMAYKIFQAM 203

Query: 244 VEKDIVVYNAMIEGY------------------------------SISIETARKALE--- 270
            EK+++ + +MI G+                              S+S      ALE   
Sbjct: 204 PEKNVISWTSMIVGFVRTGMHKEALCLLQQMLVAGIKPDKITLSCSLSACAGLGALEQGK 263

Query: 271 -VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
            +H  + KN    D  LG AL+DMY KCG++  A  VF  +++K V+TWT++I G+  +G
Sbjct: 264 WIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAVHG 323

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
             ++AL+ F  MQ+  ++P   TF   L+AC H GLV++G+ +FESM   Y+MKP MEHY
Sbjct: 324 KGSEALDWFTQMQKAGIKPTSFTFTAVLTACSHTGLVEEGKSLFESMSTFYNMKPVMEHY 383

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
            CMVDLLGRAG L++A +FV  MP KPN+ +W +LL++C LH  +E+       + +L+ 
Sbjct: 384 GCMVDLLGRAGFLKEAKEFVESMPIKPNAAIWGSLLNACHLHKHLELGKEIGKFLIELDP 443

Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
            +  G Y+ L++  AAAG+WD  +++R  +K +G+L   GCS
Sbjct: 444 -EHDGRYIHLASIHAAAGEWDEASQVRSHIKNKGLLNLPGCS 484



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/256 (21%), Positives = 111/256 (43%), Gaps = 42/256 (16%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH +I K  +K +  +   L+ +++KCG +K A  +F +L ++ +  +  +I G+  
Sbjct: 262 GKWIHTYIGKNKIKIDPVLGCALIDMYVKCGEMKKALLVFSKLEKKCVYTWTAIIGGFAV 321

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G+  E+L    ++  +G +P  +TF+ +L A +                          
Sbjct: 322 HGKGSEALDWFTQMQKAGIKPTSFTFTAVLTACS-------------------------- 355

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
                +T LV+     GK+ +  +     ++  +     M+      GF+++A+E     
Sbjct: 356 -----HTGLVEE----GKSLFESMSTFYNMKPVMEHYGCMVDLLGRAGFLKEAKEF---- 402

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGS---ALVDMYAKCGKI 300
           VE   +  NA I G  ++     K LE+  ++ K +   D +       L  ++A  G+ 
Sbjct: 403 VESMPIKPNAAIWGSLLNACHLHKHLELGKEIGKFLIELDPEHDGRYIHLASIHAAAGEW 462

Query: 301 DDARRVFDHMQQKNVF 316
           D+A +V  H++ K + 
Sbjct: 463 DEASQVRSHIKNKGLL 478


>gi|6522552|emb|CAB61996.1| putative protein [Arabidopsis thaliana]
          Length = 1229

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 156/498 (31%), Positives = 256/498 (51%), Gaps = 77/498 (15%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +H+ I    ++ N+++ +KL+  +     +  A ++FDE+P+R +   N MI  Y+ NG 
Sbjct: 61  VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGF 120

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
             E + +   +     RPD YTF  +LKA +C  + V     +GR +H    K  + +  
Sbjct: 121 YGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIV-----IGRKIHGSATKVGLSSTL 175

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI------- 239
            +   LV  Y K G  S AR+V D M  ++V+   S++ G+      +DA E+       
Sbjct: 176 FVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESV 235

Query: 240 ------------------------------FRKTVEKDIVVYNAMIEGY----------- 258
                                         F K  +K +V +N MI  Y           
Sbjct: 236 KISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVE 295

Query: 259 -------------SISIETARKAL----------EVHCQLIKNVFFEDVKLGSALVDMYA 295
                        ++SI +   A           ++H  + +     ++ L +AL+DMYA
Sbjct: 296 LYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYA 355

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KCG ++ AR VF++M+ ++V +WT+MI  YG +G    A+ LF  +Q+  + P+ + F+ 
Sbjct: 356 KCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVT 415

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            L+AC HAGL+++GR  F+ M   Y + P++EH ACMVDLLGRAG +++A +F+ +M  +
Sbjct: 416 TLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSME 475

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
           PN  VW ALL +CR+H D ++  +AA+++F+L A ++ G YV LSN  A AG+W+ VT +
Sbjct: 476 PNERVWGALLGACRVHSDTDIGLLAADKLFQL-APEQSGYYVLLSNIYAKAGRWEEVTNI 534

Query: 476 REKMKLRGVLKDTGCSWV 493
           R  MK +G+ K+ G S V
Sbjct: 535 RNIMKSKGLKKNPGASNV 552



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 10/202 (4%)

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
           P  R L R VH++I+  D++ +  L   L+ +Y      + AR VFD + E+NVI    M
Sbjct: 53  PDIRTL-RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVM 111

Query: 224 ISGFMSQGFVEDAEEIFRK----TVEKDIVVYNAMIEGYSIS--IETARKALEVHCQLIK 277
           I  +++ GF  +  ++F       V  D   +  +++  S S  I   RK   +H    K
Sbjct: 112 IRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRK---IHGSATK 168

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
                 + +G+ LV MY KCG + +AR V D M +++V +W S++ GY +N   + ALE+
Sbjct: 169 VGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEV 228

Query: 338 FCMMQECCVQPNYVTFLGALSA 359
              M+   +  +  T    L A
Sbjct: 229 CREMESVKISHDAGTMASLLPA 250



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 57/111 (51%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           A S+ S L    ++     G KIH +I +  + PN  +   L+ ++ KCG L+ A  +F+
Sbjct: 309 AVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFE 368

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
            +  R + ++  MI+ Y  +G+  ++++L  KL  SG  PD   F   L A
Sbjct: 369 NMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAA 419


>gi|356537880|ref|XP_003537434.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Glycine max]
          Length = 638

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 162/483 (33%), Positives = 246/483 (50%), Gaps = 61/483 (12%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCG--ALKYAGQMFDELPQRTLSAYNYMIAGY-- 121
           ++HA + KTG   +  I+ ++L L        + YA  +FD+LP+R   A+N +I     
Sbjct: 33  QVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPERNCFAWNTVIRALAE 92

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            ++  ++  L   + L  +   P+ +TF  +LKA   C     L    G+ VH  +LK  
Sbjct: 93  TQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKA---CAVMARLAE--GKQVHGLLLKFG 147

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK----------------NVICSTSMIS 225
           +  D+ + T L+  YV  G    A ++F   +E                 NV+    M+ 
Sbjct: 148 LVDDEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVD 207

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI------SIETARKALE--------- 270
           G+   G ++ A E+F +  ++ +V +N MI GY+       +IE   + ++         
Sbjct: 208 GYARVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRV 267

Query: 271 --------------------VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM 310
                               VH    KN    D  LGSALVDMYAKCG I+ A +VF+ +
Sbjct: 268 TLVSVLPAISRLGVLELGKWVHLYAEKNKIRIDDVLGSALVDMYAKCGSIEKAIQVFERL 327

Query: 311 QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR 370
            Q NV TW ++I G   +G  N        M++C + P+ VT++  LSAC HAGLVD+GR
Sbjct: 328 PQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSDVTYIAILSACSHAGLVDEGR 387

Query: 371 EIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRL 430
             F  M     +KPK+EHY CMVDLLGRAG LE+A + +L MP KP+  +W ALL + ++
Sbjct: 388 SFFNDMVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKM 447

Query: 431 HDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGC 490
           H ++++   AA  + ++  +D  GAYVALSN  A++G WD V  +R  MK   + KD GC
Sbjct: 448 HKNIKIGMRAAEVLMQMAPHD-SGAYVALSNMYASSGNWDGVAAVRLMMKDMDIRKDPGC 506

Query: 491 SWV 493
           SW+
Sbjct: 507 SWI 509



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 86/365 (23%), Positives = 156/365 (42%), Gaps = 77/365 (21%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGG--KTSYARIVFDMMLEKNVICSTSMISGFM 228
           + VHA ++K     D+ + T ++            YA  VFD + E+N     ++I    
Sbjct: 32  KQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPERNCFAWNTVIRALA 91

Query: 229 -SQGFVEDAEEIF-----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
            +Q    DA  +F       TVE +   + ++++  ++    A +  +VH  L+K    +
Sbjct: 92  ETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLA-EGKQVHGLLLKFGLVD 150

Query: 283 DVKLGSALVDMYAKCGKIDD---------------------------------------- 302
           D  + + L+ MY  CG ++D                                        
Sbjct: 151 DEFVVTNLLRMYVMCGSMEDANVLFYRNVEGVDDVRNLVRDERGREFNVVLCNVMVDGYA 210

Query: 303 -------ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC-MMQECCVQPNYVTFL 354
                  AR +FD M Q++V +W  MI GY +NG   +A+E+F  MMQ   V PN VT +
Sbjct: 211 RVGNLKAARELFDRMAQRSVVSWNVMISGYAQNGFYKEAIEIFHRMMQMGDVLPNRVTLV 270

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHY--ACMVDLLGRAGSLEQALKFVLEM 412
             L A    G+++ G+ +    E++   K +++    + +VD+  + GS+E+A++    +
Sbjct: 271 SVLPAISRLGVLELGKWVHLYAEKN---KIRIDDVLGSALVDMYAKCGSIEKAIQVFERL 327

Query: 413 PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK-LNANDRPG------AYVALSNTLAA 465
           P+  N   W A++    +H         AN+IF  L+  ++ G       Y+A+ +  + 
Sbjct: 328 PQN-NVITWNAVIGGLAMHG-------KANDIFNYLSRMEKCGISPSDVTYIAILSACSH 379

Query: 466 AGKWD 470
           AG  D
Sbjct: 380 AGLVD 384



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/278 (21%), Positives = 116/278 (41%), Gaps = 45/278 (16%)

Query: 27  QTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKL 86
           + F   +Q  D L N +T  S+  A+           G  +H +  K  ++ +  +   L
Sbjct: 251 EIFHRMMQMGDVLPNRVTLVSVLPAISRL---GVLELGKWVHLYAEKNKIRIDDVLGSAL 307

Query: 87  LILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDG 146
           + ++ KCG+++ A Q+F+ LPQ  +  +N +I G   +G+  +  + + ++   G  P  
Sbjct: 308 VDMYAKCGSIEKAIQVFERLPQNNVITWNAVIGGLAMHGKANDIFNYLSRMEKCGISPSD 367

Query: 147 YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR 206
            T+  IL A +                               +  LVD     G++ +  
Sbjct: 368 VTYIAILSACS-------------------------------HAGLVDE----GRSFFND 392

Query: 207 IVFDMMLEKNVICSTSMISGFMSQGFVEDAEE-IFRKTVEKDIVVYNAMIEGYSI--SIE 263
           +V  + L+  +     M+      G++E+AEE I    ++ D V++ A++    +  +I+
Sbjct: 393 MVNSVGLKPKIEHYGCMVDLLGRAGYLEEAEELILNMPMKPDDVIWKALLGASKMHKNIK 452

Query: 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
              +A EV  Q+  +    D     AL +MYA  G  D
Sbjct: 453 IGMRAAEVLMQMAPH----DSGAYVALSNMYASSGNWD 486



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 31/114 (27%), Positives = 57/114 (50%), Gaps = 4/114 (3%)

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG--KIDDARRVFDHMQQKNVFTWTS 320
           ++ R+  +VH  L+K     D  + + ++ + A      I  A  VFD + ++N F W +
Sbjct: 26  KSMRELKQVHAFLVKTGQTHDNAIATEILRLSATSDFRDIGYALSVFDQLPERNCFAWNT 85

Query: 321 MIDGYGKNGNPN-QALELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           +I    +  + +  AL +FC M+ E  V+PN  TF   L AC     + +G+++
Sbjct: 86  VIRALAETQDRHLDALLVFCQMLSEATVEPNQFTFPSVLKACAVMARLAEGKQV 139


>gi|224068783|ref|XP_002302824.1| predicted protein [Populus trichocarpa]
 gi|222844550|gb|EEE82097.1| predicted protein [Populus trichocarpa]
          Length = 581

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 152/468 (32%), Positives = 261/468 (55%), Gaps = 23/468 (4%)

Query: 37  DSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGAL 96
           D+ + P    +  S L+H+       +G++IH  + K G +    IS  L+ ++ KC   
Sbjct: 9   DNFTFPFIIKAC-SCLRHFE------FGIRIHQDVVKFGYQSQVFISNSLITMYGKCDKY 61

Query: 97  KYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAS 156
           + + Q+FDE+P +   +++ +I   L++ + +E  SL R+++S G RP   +   IL A 
Sbjct: 62  ELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRP---SRGAILNAM 118

Query: 157 TCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216
            C RS+          V+  +++  +  D  + +A    + + G+   AR +FD ++ K+
Sbjct: 119 ACVRSHEEADD-----VYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKD 173

Query: 217 VICSTSMISGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVH 272
           ++   + I  ++      +A    +++  + +  D +    +I   S ++ + + A  VH
Sbjct: 174 LVTWATTIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACS-TLASFQLAHIVH 232

Query: 273 CQLIKNVFFEDV-KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
             +    F+  +  + +AL+D+Y KCG +  AR+VFD MQ++N+ TW++MI GYG +G  
Sbjct: 233 GIITTGFFYNQLLAVETALIDLYVKCGSLTYARKVFDGMQERNIITWSAMISGYGMHGWG 292

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC 391
            +AL LF  M+   V+P+++TF+  LSAC H+GLV +G E F SM RD+ + P+ EHYAC
Sbjct: 293 REALNLFDQMK-ASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYAC 351

Query: 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451
           MVD+LGRAG L++A  F+  MP +PN+ VW ALL +CR+H +V++A + A  +F L+ ++
Sbjct: 352 MVDILGRAGKLDEACDFIERMPVRPNAAVWGALLGACRIHLNVDLAEMVARALFDLDPHN 411

Query: 452 RPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
             G YV L N     GK      +R  MK RGV K  G S +  ++ L
Sbjct: 412 -AGRYVILYNIYTLTGKRKEADSIRTLMKNRGVKKIAGYSVIEIKNKL 458



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 90/377 (23%), Positives = 161/377 (42%), Gaps = 41/377 (10%)

Query: 141 GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGG 200
           G +PD +TF  I+KA +C R         G  +H  ++K   ++   +  +L+  Y K  
Sbjct: 5   GIQPDNFTFPFIIKACSCLRHF-----EFGIRIHQDVVKFGYQSQVFISNSLITMYGKCD 59

Query: 201 KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI 260
           K   +R VFD M +KN +  +++I   +     ++   +FR+ + +        I     
Sbjct: 60  KYELSRQVFDEMPDKNAVSWSAIIGACLQDDRCKEGFSLFRQMLSEGSRPSRGAILNAMA 119

Query: 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
            + +  +A +V+  +++N    D  + SA   M+A+CG+++ AR++FD +  K++ TW +
Sbjct: 120 CVRSHEEADDVYRVVVENGLDFDQSVQSAAAGMFARCGRVEVARKLFDGIMSKDLVTWAT 179

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
            I+ Y K   P +AL L   M    + P+ +T LG + AC           +   +   +
Sbjct: 180 TIEAYVKADMPLEALGLLKQMMLQGIFPDAITLLGVIRACSTLASFQLAHIVHGIITTGF 239

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH--------- 431
                +     ++DL  + GSL  A K    M E+ N   W+A++S   +H         
Sbjct: 240 FYNQLLAVETALIDLYVKCGSLTYARKVFDGMQER-NIITWSAMISGYGMHGWGREALNL 298

Query: 432 ----------DDVEMANIAAN-----------EIFKLNAND-----RPGAYVALSNTLAA 465
                     D +   +I +            E F   A D     RP  Y  + + L  
Sbjct: 299 FDQMKASVKPDHITFVSILSACSHSGLVAEGWECFNSMARDFGVTPRPEHYACMVDILGR 358

Query: 466 AGKWDSVTELREKMKLR 482
           AGK D   +  E+M +R
Sbjct: 359 AGKLDEACDFIERMPVR 375


>gi|449507426|ref|XP_004163029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 154/439 (35%), Positives = 244/439 (55%), Gaps = 15/439 (3%)

Query: 68  HAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV 127
           H  + + G+  + ++S  L+ ++ +CG +  A ++FDE+ Q+ L ++N MI+GY K    
Sbjct: 150 HCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHA 209

Query: 128 EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV 187
            E++ L R+++ +G +P+  +   +L A   C     L   LG  V   +++  +  +  
Sbjct: 210 GEAVGLFREMMEAGFQPNEMSLVSVLGA---CGELGDL--KLGTWVEEFVVENKMTLNYF 264

Query: 188 LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR-----K 242
           + +AL+  Y K G    AR +FD M +K+ +   +MI+G+   G  E+A ++F+      
Sbjct: 265 MGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSS 324

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
           T    I +   +    SI      K +E++    +  F +DV +G+ALVDMYAKCG +D+
Sbjct: 325 TAPDQITLIGILSACASIGALDLGKQVEIYAS--ERGFQDDVYVGTALVDMYAKCGSLDN 382

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF-CMMQEC-CVQPNYVTFLGALSAC 360
           A RVF  M +KN  +W +MI     +G   +AL LF  MM E   V PN +TF+G LSAC
Sbjct: 383 AFRVFYGMPKKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSAC 442

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            HAGLVD+GR +F  M   + + PK+EHY+CMVDL  RAG LE+A  FV+ MPEKP+  +
Sbjct: 443 VHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVI 502

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
             ALL +C+   +++++      + +L  ++  G YV  S   A   +WD    +R  MK
Sbjct: 503 LGALLGACQKRKNIDISERVMKLLLELEPSN-SGNYVISSKLYANLRRWDDSARMRMLMK 561

Query: 481 LRGVLKDTGCSWVGTESGL 499
            +GV K  GCSW+   S L
Sbjct: 562 QKGVSKTPGCSWIDINSQL 580



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 115/383 (30%), Positives = 187/383 (48%), Gaps = 29/383 (7%)

Query: 66  KIHAHITKTGV-KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           +IHA +    + KPN   S    I  LK  A  YA   F  +   T  ++N MI G L  
Sbjct: 50  QIHAQLLTNSIHKPN---SFLYKIADLKDFA--YASVFFSNILDPTEYSFNVMIRG-LST 103

Query: 125 GQVEESLSL--VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
              + SL+L    ++   G +P+  T+  +  A     SN+    N GRM H  +++  +
Sbjct: 104 AWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIAC----SNLLAVEN-GRMGHCSVIRRGL 158

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             D  +  +L+  Y + GK   AR VFD + +K+++   SMISG+       +A  +FR+
Sbjct: 159 DEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFRE 218

Query: 243 TVEKD--------IVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
            +E          + V  A  E   + + T  +   V  ++  N F     +GSAL+ MY
Sbjct: 219 MMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYF-----MGSALIHMY 273

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
            KCG +  ARR+FD M++K+  TW +MI GY +NG   +A++LF  M+     P+ +T +
Sbjct: 274 GKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLI 333

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
           G LSAC   G +D G+++ E    +   +  +     +VD+  + GSL+ A +    MP+
Sbjct: 334 GILSACASIGALDLGKQV-EIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPK 392

Query: 415 KPNSDVWAALLSSCRLHDDVEMA 437
           K N   W A++S+   H   + A
Sbjct: 393 K-NEVSWNAMISALAFHGQAQEA 414


>gi|357167843|ref|XP_003581359.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like, partial [Brachypodium distachyon]
          Length = 745

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 158/442 (35%), Positives = 245/442 (55%), Gaps = 15/442 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  + A+  K G   +  +   L+ ++  CG +  A  +F  +  + + A+N MIAGY+K
Sbjct: 190 GRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTVQVKGVIAWNAMIAGYVK 249

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  +E + + + ++      D  T   +  A+ C R       NLG+ +     +  + 
Sbjct: 250 NGDWKEVVEMFKGMLEVRAPFDEVTLLSV--ATACGRLG---DANLGQWIAEYAEEKGML 304

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               L TALVD Y K G+   AR +FD M  ++V+  ++MISG+       +A  IF + 
Sbjct: 305 RSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGYTQSDRCREALAIFNEM 364

Query: 244 ----VEKDIVVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
               V  + V   +++   ++  ++ET +    VH  + +      V LG+ALVD YAKC
Sbjct: 365 QGTEVNPNDVTMVSVLSACAVLGALETGK---WVHSYIRRKDLPLTVILGTALVDFYAKC 421

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G I DA + F+ M  +N +TWT++I G   NG   +ALELF  M E  ++P  VTF+G L
Sbjct: 422 GCIKDAVKAFESMPVRNTWTWTALIKGMASNGRSREALELFSSMLEANIEPTDVTFIGVL 481

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            AC H  LV++GR  F SM +DY + P++EHY CMVDLLGRAG +++A +F+  MP +PN
Sbjct: 482 LACSHGCLVEEGRRHFTSMTQDYGICPRIEHYGCMVDLLGRAGLIDEAYQFIRNMPIEPN 541

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
           + VW ALLS+C +H +VE+   A  +I  L+     G Y+ LSNT A+ G+W +   +R+
Sbjct: 542 AVVWRALLSACTVHKNVEIGEEALKQIVPLDPC-HSGNYILLSNTYASVGQWKNAAMVRK 600

Query: 478 KMKLRGVLKDTGCSWVGTESGL 499
           +MK +GV K  GCS +  E  +
Sbjct: 601 EMKEKGVEKIPGCSLIELEGTI 622



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 104/341 (30%), Positives = 165/341 (48%), Gaps = 23/341 (6%)

Query: 96  LKYAGQMF--DELPQRTLSAYNYMIAGYLKNGQVEESLSL-VRKLVSSGERPDGYTFSMI 152
           L YA ++F     P R+  +YN +I  +L+ G  E++L L V  L  +   PD +T +  
Sbjct: 118 LSYAIRLFRLGPHPPRSARSYNILIRSFLRAGHPEDALHLFVEMLDDTAVSPDQHTVANT 177

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           +K  +C R       ++GR V A   K     D  +  +L+  Y   G    A ++F  +
Sbjct: 178 VK--SCSRM---CDLSVGRGVQAYAFKRGFMVDQFVLNSLIHMYASCGDVVAAHVLFHTV 232

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETA--RKALE 270
             K VI   +MI+G++  G  ++  E+F+  +E    V     E   +S+ TA  R    
Sbjct: 233 QVKGVIAWNAMIAGYVKNGDWKEVVEMFKGMLE----VRAPFDEVTLLSVATACGRLGDA 288

Query: 271 VHCQLIKNV-----FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
              Q I              L +ALVDMYAKCG++D ARR+FD M  ++V  W++MI GY
Sbjct: 289 NLGQWIAEYAEEKGMLRSRNLATALVDMYAKCGELDKARRLFDRMHSRDVVAWSAMISGY 348

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER-DYSMKP 384
            ++    +AL +F  MQ   V PN VT +  LSAC   G ++ G+ +   + R D  +  
Sbjct: 349 TQSDRCREALAIFNEMQGTEVNPNDVTMVSVLSACAVLGALETGKWVHSYIRRKDLPLTV 408

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
            +     +VD   + G ++ A+K    MP + N+  W AL+
Sbjct: 409 ILG--TALVDFYAKCGCIKDAVKAFESMPVR-NTWTWTALI 446


>gi|297851096|ref|XP_002893429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297339271|gb|EFH69688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 790

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 158/505 (31%), Positives = 273/505 (54%), Gaps = 81/505 (16%)

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGA----LKYAGQMFDELPQR----------- 109
           ++ HA   K+G    T++S  L+ ++ +C +    L  A ++FD++P++           
Sbjct: 169 VQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVFDDIPEKDERSWTTMMTG 228

Query: 110 ---------------------TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYT 148
                                 L AYN MI+GY+  G  +E+L +VR++VSSG   D +T
Sbjct: 229 YVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEALEMVRRMVSSGIELDEFT 288

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLY--TALVDSYVKGGKTSYAR 206
           +  +++A    R        LG+ VHA +L+   + D   +   +LV  Y K GK + AR
Sbjct: 289 YPSVIRACANAR-----LLQLGKQVHAYVLR---REDFSFHFDNSLVTLYYKCGKFNEAR 340

Query: 207 IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEG--------- 257
            +F+ M  K+++   +++SG++S G + +A+ IF++  EK+I+ +  MI G         
Sbjct: 341 AIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEE 400

Query: 258 -------------------YSISIETAR------KALEVHCQLIKNVFFEDVKLGSALVD 292
                              +S +I++           + H QL+K  F   +  G+AL+ 
Sbjct: 401 GLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQFHAQLVKIGFDSSLSAGNALIT 460

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           MYAKCG +++A++VF  M   +  +W ++I   G++G+  +A++++  M +  ++P+ +T
Sbjct: 461 MYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQHGHGVEAVDVYEEMLKKGIRPDRIT 520

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
           FL  L+AC HAGLVD+GR+ F SME  Y + P  +HYA ++DLL R+G   +A   +  +
Sbjct: 521 FLTVLTACSHAGLVDQGRKYFNSMETVYRIPPGADHYARLIDLLCRSGKFSEAESIIESL 580

Query: 413 PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSV 472
           P KP +++W ALLS CR+H ++E+  IAA+++F L   +  G Y+ LSN  AA G+W+ V
Sbjct: 581 PFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGL-IPEHDGTYMLLSNMYAATGQWEEV 639

Query: 473 TELREKMKLRGVLKDTGCSWVGTES 497
             +R+ M+ RGV K+  CSW+  E+
Sbjct: 640 ARVRKLMRDRGVKKEVACSWIEMET 664



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 89/385 (23%), Positives = 164/385 (42%), Gaps = 81/385 (21%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ------------------ 108
           +H +I   G +P+ +I  +L+ ++ K   L YA Q+FDE+ +                  
Sbjct: 36  VHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPDKIARTTMVSGYCASGD 95

Query: 109 ---------------RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
                          R    YN MI G+  N     +++L  K+   G +PD +T++ +L
Sbjct: 96  IALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDDFTYASVL 155

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKT----SYARIVF 209
                   +           HA  LK        +  ALV  Y +   +      AR VF
Sbjct: 156 AGLALVVDD----EKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCASSPSLLHSARKVF 211

Query: 210 DMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK-DIVVYNAMIEG------YSISI 262
           D + EK+    T+M++G++  G  +  +E+ +   E   +V YNAMI G      Y  ++
Sbjct: 212 DDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMISGYVNCGLYQEAL 271

Query: 263 ETARKAL----------------------------EVHCQLIKNVFFEDVKLGSALVDMY 294
           E  R+ +                            +VH  +++   F      ++LV +Y
Sbjct: 272 EMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDF-SFHFDNSLVTLY 330

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
            KCGK ++AR +F+ M  K++ +W +++ GY  +G+  +A  +F  M+E     N ++++
Sbjct: 331 YKCGKFNEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKE----KNILSWM 386

Query: 355 GALSACGHAGLVDKGREIFESMERD 379
             +S     G  ++G ++F  M+R+
Sbjct: 387 IMISGLAENGFGEEGLKLFSCMKRE 411



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 146/346 (42%), Gaps = 85/346 (24%)

Query: 160 RSNVPLPR---NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216
           R  +PL R    L R VH  I+    +    +   L+D Y K  +  YAR +FD + E +
Sbjct: 20  RLCLPLRRTSLQLARAVHGNIITFGFQPHAHILNRLIDVYCKSSELDYARQLFDEISEPD 79

Query: 217 VICSTSMISGFMSQGFVEDAEEIFRKT--VEKDIVVYNAMIEGYS--------------- 259
            I  T+M+SG+ + G +  A  +F +T    +D V+YNAMI G+S               
Sbjct: 80  KIARTTMVSGYCASGDIALARSVFEETPVSMRDTVMYNAMITGFSHNNDGYSAINLFCKM 139

Query: 260 --------------------ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
                               + ++  ++ ++ H   +K+       + +ALV +Y++C  
Sbjct: 140 KHEGFKPDDFTYASVLAGLALVVDDEKQCVQFHAAALKSGAGYVTSVSNALVSVYSRCAS 199

Query: 300 ----IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPN----------------------- 332
               +  AR+VFD + +K+  +WT+M+ GY KNG  +                       
Sbjct: 200 SPSLLHSARKVFDDIPEKDERSWTTMMTGYVKNGCFDLGKELLKGMDENMKLVAYNAMIS 259

Query: 333 ---------QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER--DYS 381
                    +ALE+   M    ++ +  T+   + AC +A L+  G+++   + R  D+S
Sbjct: 260 GYVNCGLYQEALEMVRRMVSSGIELDEFTYPSVIRACANARLLQLGKQVHAYVLRREDFS 319

Query: 382 MKPKMEHY-ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
                 H+   +V L  + G   +A     +MP K +   W ALLS
Sbjct: 320 F-----HFDNSLVTLYYKCGKFNEARAIFEKMPAK-DLVSWNALLS 359



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 86/193 (44%), Gaps = 17/193 (8%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G + HA + K G   + +    L+ ++ KCG ++ A Q+F  +P     ++N +IA   +
Sbjct: 436 GQQFHAQLVKIGFDSSLSAGNALITMYAKCGVVEEAQQVFRTMPCLDSVSWNALIAALGQ 495

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH---AQILKC 180
           +G   E++ +  +++  G RPD  TF  +L A  C  + +    + GR        + + 
Sbjct: 496 HGHGVEAVDVYEEMLKKGIRPDRITFLTVLTA--CSHAGLV---DQGRKYFNSMETVYRI 550

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK------NVICSTSMISGFMSQGFVE 234
              AD   Y  L+D   + GK S A  + + +  K        + S   + G M  G + 
Sbjct: 551 PPGADH--YARLIDLLCRSGKFSEAESIIESLPFKPTAEIWEALLSGCRVHGNMELGIIA 608

Query: 235 DAEEIFRKTVEKD 247
            A+++F    E D
Sbjct: 609 -ADKLFGLIPEHD 620


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 148/433 (34%), Positives = 250/433 (57%), Gaps = 10/433 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA+  K  +  +  I+  L+ +++KC +++ + ++FD +  +   ++  +IA Y +
Sbjct: 384 GREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQ 443

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           + +  E++   R     G + D      IL+A +  +S      +L + VH+  ++  + 
Sbjct: 444 SSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSI-----SLLKQVHSYAIRNGL- 497

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D +L   ++D Y + G+  YA  +F+M+ +K+++  TSM++ F   G + +A  +F K 
Sbjct: 498 LDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKM 557

Query: 244 VEKDI---VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           +   I    V    I G    + +  K  E+H  LI+  F  +  + S+LVDMY+ CG +
Sbjct: 558 LNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVSSLVDMYSGCGSM 617

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           + A +VFD  + K+V  WT+MI+  G +G+  QA+ +F  M E  V P++V+FL  L AC
Sbjct: 618 NYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLALLYAC 677

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            H+ LVD+G+   + M   Y ++P  EHYAC+VDLLGR+G  E+A KF+  MP +P S V
Sbjct: 678 SHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLEPKSVV 737

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W ALL +CR+H + E+A IA +++ +L   D PG YV +SN  A  GKW++V E+R KM 
Sbjct: 738 WCALLGACRIHKNHELAMIATDKLLELEP-DNPGNYVLVSNVFAEMGKWNNVKEIRTKMT 796

Query: 481 LRGVLKDTGCSWV 493
            +G+ KD  CSW+
Sbjct: 797 EQGLRKDPACSWI 809



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 97/335 (28%), Positives = 164/335 (48%), Gaps = 22/335 (6%)

Query: 64  GLKIHAHITKTGVKPNTN---ISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120
           G ++HAH   TG   + +   ++ KLL ++ KCG L  A ++FD +P RT+ ++N +I  
Sbjct: 74  GRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALIGA 133

Query: 121 YLKNGQVEESLSLVRKLVSS----GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
            L +G   E++ + R + +S    G  PDG T + +LKA              G  VH  
Sbjct: 134 CLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKAC-----GAEGDGRCGSEVHGL 188

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE-KNVICSTSMISGFMSQGFVED 235
            +K  +    ++  ALV  Y K G    A  VF+ M + ++V    S ISG +  G   +
Sbjct: 189 AVKSGLDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLE 248

Query: 236 AEEIFRKTVEKDIVVYNAMIEG-YSISIETAR--KALEVHCQLIKNVFFEDVKLGSALVD 292
           A ++FR+       + +    G   +  E A+     E+H  L+K     +++  + LV 
Sbjct: 249 ALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQCNALLV- 307

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           MYA+CG +D A RVF  +  K+  +W SM+  Y +N    +A++ F  M +    P++  
Sbjct: 308 MYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHAC 367

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
            +  LSA GH G +  GRE+       Y++K +++
Sbjct: 368 IVSLLSAVGHLGRLINGREVHA-----YAVKQRLD 397


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 157/470 (33%), Positives = 250/470 (53%), Gaps = 12/470 (2%)

Query: 29  FPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLI 88
           F   ++ Y+ +    +  +  S L    N      G KIHA I+  G + + ++   LL 
Sbjct: 204 FEEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLT 263

Query: 89  LHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYT 148
           ++ +C  L  A ++F  LP+R + +++ MIA + +    +E++    K+   G RP+ YT
Sbjct: 264 MYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYT 323

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIV 208
           F+ +L A   C S   L    GR VH QIL    K   V  TALVD Y   G    AR +
Sbjct: 324 FASVLLA---CASVGDL--RAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSL 378

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK-----TVEKDIVVYNAMIEGYSISIE 263
           FD +  ++    T +I G+  QG      E++R+      V    ++Y+ +I   + S+ 
Sbjct: 379 FDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACA-SLG 437

Query: 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMID 323
               A + H  +  +    D  L ++LV+MY++ G ++ AR+VFD M  ++   WT++I 
Sbjct: 438 AFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIA 497

Query: 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK 383
           GY K+G    AL L+  M+    +P+ +TF+  L AC HAGL ++G+++F S++ DY+M 
Sbjct: 498 GYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMH 557

Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANE 443
           P + HY+C++DLL RAG L  A + +  MP +PN   W++LL + R+H DV+ A  AA +
Sbjct: 558 PNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQ 617

Query: 444 IFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           I KL+  D P +YV LSN  A  G    +  +R  M  RGV K  G SW+
Sbjct: 618 ITKLDPVD-PASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWI 666



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 187/380 (49%), Gaps = 17/380 (4%)

Query: 64  GLKIHAHITKT-GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G  IH+ I+ T G+K +  +   LL ++ KCG+L+ A ++F+ +  R++S++N MIA Y 
Sbjct: 140 GKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYA 199

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           ++G  EE++ L   +      P   TF+ +L  S C  SN+ L  + GR +HA I     
Sbjct: 200 QSGHFEEAIRLYEDM---DVEPSVRTFTSVL--SAC--SNLGLL-DQGRKIHALISSRGT 251

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           + D  L  AL+  Y +      A  +F  +  ++V+  ++MI+ F      ++A E + K
Sbjct: 252 ELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSK 311

Query: 243 T----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
                V  +   + +++   + S+   R    VH Q++ N +   +  G+ALVD+Y   G
Sbjct: 312 MQLEGVRPNYYTFASVLLACA-SVGDLRAGRAVHDQILGNGYKITLVNGTALVDLYTSYG 370

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP-NYVTFLGAL 357
            +D+AR +FD ++ ++   WT +I GY K G+    LEL+  M+     P   + +   +
Sbjct: 371 SLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVI 430

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           SAC   G     R+    +E D  M         +V++  R G+LE A +   +M  + +
Sbjct: 431 SACASLGAFADARQAHSDIEAD-GMISDFVLATSLVNMYSRWGNLESARQVFDKMSSR-D 488

Query: 418 SDVWAALLSSCRLHDDVEMA 437
           +  W  L++    H +  +A
Sbjct: 489 TLAWTTLIAGYAKHGEHGLA 508



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 88/362 (24%), Positives = 180/362 (49%), Gaps = 14/362 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IH  I+      N  +  +++  + KCG++  A   FD + ++   ++  M+  Y +NG
Sbjct: 45  QIHDRISGAA-SANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNG 103

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD-VKA 184
               +L L +++     +P+   ++ +L A   C S   L    G+ +H++I     +K 
Sbjct: 104 HYRAALDLYKRM---DLQPNPVVYTTVLGA---CASIKALEE--GKAIHSRISGTKGLKL 155

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT- 243
           D +L  +L+  Y K G    A+ +F+ M  ++V    +MI+ +   G  E+A  ++    
Sbjct: 156 DVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMD 215

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
           VE  +  + +++   S ++    +  ++H  +       D+ L +AL+ MYA+C  +DDA
Sbjct: 216 VEPSVRTFTSVLSACS-NLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDA 274

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
            ++F  + +++V +W++MI  + +    ++A+E +  MQ   V+PNY TF   L AC   
Sbjct: 275 AKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASV 334

Query: 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA 423
           G +  GR + + +  +   K  + +   +VDL    GSL++A + + +  E  +  +W  
Sbjct: 335 GDLRAGRAVHDQILGN-GYKITLVNGTALVDLYTSYGSLDEA-RSLFDQIENRDEGLWTV 392

Query: 424 LL 425
           L+
Sbjct: 393 LI 394



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 140/266 (52%), Gaps = 23/266 (8%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           R +H +I      A+  L   +V +Y K G  + AR  FD +  KN     SM++ +   
Sbjct: 44  RQIHDRISGA-ASANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQN 102

Query: 231 GFVEDAEEIFRKT-VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE-DVKLGS 288
           G    A +++++  ++ + VVY  ++ G   SI+   +   +H ++      + DV L +
Sbjct: 103 GHYRAALDLYKRMDLQPNPVVYTTVL-GACASIKALEEGKAIHSRISGTKGLKLDVILEN 161

Query: 289 ALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348
           +L+ MYAKCG ++DA+R+F+ M  ++V +W +MI  Y ++G+  +A+ L+   ++  V+P
Sbjct: 162 SLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLY---EDMDVEP 218

Query: 349 NYVTFLGALSACGHAGLVDKGREIF-----ESMERDYSMKPKMEHYACMVDLLGRAGSLE 403
           +  TF   LSAC + GL+D+GR+I         E D S++        ++ +  R   L+
Sbjct: 219 SVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQN------ALLTMYARCKCLD 272

Query: 404 QALKFVLEMPEKPNSDV--WAALLSS 427
            A K    +P +   DV  W+A++++
Sbjct: 273 DAAKIFQRLPRR---DVVSWSAMIAA 295


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 154/458 (33%), Positives = 258/458 (56%), Gaps = 21/458 (4%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           LT TS+  A  H    D  F G  +H ++  +G + +T  S  L+ ++ KCG L  + ++
Sbjct: 317 LTITSILQACGHL--GDLEF-GKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEV 373

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           F  +  +   ++N MI  Y++NG  +E++ L  K++ +  +PD  T+ M+L  ST     
Sbjct: 374 FSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGD- 431

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
                +LG+ +H  + K    ++ V+   LVD Y K G+   +  VF+ M  +++I   +
Sbjct: 432 ----LHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNT 487

Query: 223 MISGFMSQGFVEDAEEIFR-------KTVEKDIVVYNAMIEGYSISIETARKALEVHCQL 275
           +I+  +     ED     R       + V  D+    +++   S+ +   R+  E+H  +
Sbjct: 488 IIASCVHS---EDCNLGLRMISRMRTEGVTPDMATMLSILPVCSL-LAAKRQGKEIHGCI 543

Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
            K     DV +G+ L++MY+KCG + ++ +VF  M+ K+V TWT++I   G  G   +A+
Sbjct: 544 FKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAV 603

Query: 336 ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDL 395
             F  M+   + P++V F+  + AC H+GLV++G   F  M++DY ++P++EHYAC+VDL
Sbjct: 604 RAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDL 663

Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA 455
           L R+  L++A  F+L MP KP+S +W ALLS+CR+  D E+A   +  I +LN +D  G 
Sbjct: 664 LSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDD-TGY 722

Query: 456 YVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           YV +SN  AA GKWD V  +R+ +K RG+ KD GCSW+
Sbjct: 723 YVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWM 760



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 190/376 (50%), Gaps = 16/376 (4%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           IH  +   G   +  I   L+ ++ +   L  A ++F+E+P R + ++N +I+GY  NG 
Sbjct: 137 IHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGY 196

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
             E+L +  +  + G  PD YT S +L+A   C     +    G ++H  I K  +K D 
Sbjct: 197 WNEALEIYYRFRNLGVVPDSYTMSSVLRA---CGGLGSVEE--GDIIHGLIEKIGIKKDV 251

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
           ++   L+  Y K       R +FD M+ ++ +   +MI G+   G  E++ ++F + V +
Sbjct: 252 IVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ 311

Query: 247 ---DIVVYNAMIE--GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
              D++   ++++  G+   +E  +    VH  +I + +  D    + L++MYAKCG + 
Sbjct: 312 FKPDLLTITSILQACGHLGDLEFGKY---VHDYMITSGYECDTTASNILINMYAKCGNLL 368

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            ++ VF  M+ K+  +W SMI+ Y +NG+ ++A++LF MM+   V+P+ VT++  LS   
Sbjct: 369 ASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKT-DVKPDSVTYVMLLSMST 427

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
             G +  G+E+   + +       +     +VD+  + G +  +LK V E  +  +   W
Sbjct: 428 QLGDLHLGKELHCDLAK-MGFNSNIVVSNTLVDMYAKCGEMGDSLK-VFENMKARDIITW 485

Query: 422 AALLSSCRLHDDVEMA 437
             +++SC   +D  + 
Sbjct: 486 NTIIASCVHSEDCNLG 501



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 186/423 (43%), Gaps = 59/423 (13%)

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P   +  +N +I     NG   E+LSL  +      +PD YTF  ++ A         L 
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGL-----LD 130

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
             + + +H ++L     +D  +  AL+D Y +      AR VF+ M  ++V+   S+ISG
Sbjct: 131 FEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISG 190

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS--------IETARKALEVHCQLIKN 278
           + + G+  +A EI+ +     +V      + Y++S        + +  +   +H  + K 
Sbjct: 191 YNANGYWNEALEIYYRFRNLGVVP-----DSYTMSSVLRACGGLGSVEEGDIIHGLIEKI 245

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
              +DV + + L+ MY K   + D RR+FD M  ++  +W +MI GY + G   ++++LF
Sbjct: 246 GIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLF 305

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM---------------------- 376
             M     +P+ +T    L ACGH G ++ G+ + + M                      
Sbjct: 306 MEMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKC 364

Query: 377 -------ERDYSMKPKME-HYACMVDLLGRAGSLEQALKF--VLEMPEKPNSDVWAALLS 426
                  E    MK K    +  M+++  + GS ++A+K   +++   KP+S  +  LLS
Sbjct: 365 GNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLS 424

Query: 427 SCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL----AAAGKWDSVTELREKMKLR 482
                 D+ +      ++ K+  N      + +SNTL    A  G+     ++ E MK R
Sbjct: 425 MSTQLGDLHLGKELHCDLAKMGFNSN----IVVSNTLVDMYAKCGEMGDSLKVFENMKAR 480

Query: 483 GVL 485
            ++
Sbjct: 481 DII 483


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 147/440 (33%), Positives = 246/440 (55%), Gaps = 11/440 (2%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           F GL++H    K+G   +  +   +L L+ KC AL  A  +F E+ QR   ++N +IA  
Sbjct: 370 FQGLQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAAL 429

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            +N   E++++ + +++ SG  PD +T+  +LKA    +S        G +VH + +K  
Sbjct: 430 EQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQS-----LEYGLVVHGKAIKSG 484

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +  D  + + +VD Y K G  + A+ + D +  + ++   S+ISGF      E+A+  F 
Sbjct: 485 LGLDAFVSSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFS 544

Query: 242 KT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           +     V+ D   Y  +++  + ++ T     ++H Q+IK     D  + S LVDMYAKC
Sbjct: 545 EMLDMGVKPDHFTYATVLDTCA-NLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKC 603

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G + D+  +F+  ++ +  +W +MI GY  +G   +ALE+F  MQ   V PN+ TF+  L
Sbjct: 604 GNMPDSLLMFEKARKLDFVSWNAMICGYALHGQGLEALEMFERMQRANVVPNHATFVAVL 663

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            AC H GL+D G + F  M   Y + P++EH+ACMVD+LGR+   ++AL+F+  MP + +
Sbjct: 664 RACSHVGLLDDGCQYFHLMTSRYKLVPQLEHFACMVDILGRSKGPQEALEFIRSMPIEAD 723

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
           + VW  LLS C++  DVE+A  AA+ + +L+ +D    Y+ LSN  A +GKW  V+  R 
Sbjct: 724 AVVWKTLLSICKIRQDVEVAETAASNVLRLDPDD-ASVYILLSNVYAGSGKWVDVSRTRR 782

Query: 478 KMKLRGVLKDTGCSWVGTES 497
            M+   + K+ GCSW+  +S
Sbjct: 783 LMRQGRLRKEPGCSWIEVQS 802



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 109/419 (26%), Positives = 181/419 (43%), Gaps = 45/419 (10%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G   HA +  +G  P T +S  LL ++ +CG   +A  +FD +P R   ++N M+  Y+ 
Sbjct: 38  GQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHGVFDTMPHRDTVSWNTMLTAYVH 97

Query: 124 NGQVEESLSLVRKL-----VSSGERPDGYTFSMILKAST-----CCRSNVPLPRN----- 168
            G  + + SL   +     VS      GY    + + S        R  V L R      
Sbjct: 98  AGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSMEMSRRGVALDRTTLAVL 157

Query: 169 -----------LGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
                      LG  +HA  +K  ++ D    +ALVD Y K      A   F  M E+N 
Sbjct: 158 LKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGMGERNS 217

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV----YNAMIEGYSI--SIETARKALEV 271
           +   + I+G +         E+F +     + V    Y +     +    + TAR   ++
Sbjct: 218 VSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTAR---QL 274

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
           H   IKNVF  D  +G+A+VD+YAK G + DARR F  +   NV T  +M+ G  + G  
Sbjct: 275 HAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTGLG 334

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC 391
            +A++LF  M    V  + ++  G  SAC       +G ++        ++K   +   C
Sbjct: 335 AEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQV-----HCLAVKSGFDVDVC 389

Query: 392 ----MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446
               ++DL G+  +L +A     EM E+ +S  W A++++   ++  E      NE+ +
Sbjct: 390 VRNAILDLYGKCKALVEAYLVFQEM-EQRDSVSWNAIIAALEQNECYEDTIAHLNEMLR 447



 Score =  112 bits (281), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 107/442 (24%), Positives = 189/442 (42%), Gaps = 45/442 (10%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L  T+L   L+     D    G++IHA   KTG++ +      L+ ++ KC +L  A + 
Sbjct: 149 LDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRF 208

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           F  + +R   ++   IAG ++N Q    + L  ++     +  G   S    AS   RS 
Sbjct: 209 FHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQM-----QRLGLGVSQPAYASA-FRSC 262

Query: 163 VPLP-RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
             +P  +  R +HA  +K    +D V+ TA+VD Y K G    AR  F  +   NV    
Sbjct: 263 AAMPCLSTARQLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCN 322

Query: 222 SMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIK 277
           +M+ G +  G   +A ++F    R  V  D++  + +    +  ++   + L+VHC  +K
Sbjct: 323 AMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACA-EVKGYFQGLQVHCLAVK 381

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
           + F  DV + +A++D+Y KC  + +A  VF  M+Q++  +W ++I    +N      +  
Sbjct: 382 SGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAH 441

Query: 338 FCMMQECCVQPNYVTFLGALSACG-----HAGLVDKGREIFESMERDYSMKPKMEHYACM 392
              M    ++P+  T+   L AC        GLV  G+ I   +  D  +   +    C 
Sbjct: 442 LNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLDAFVSSTVVDMYCK 501

Query: 393 VDLLGRAGSL-------------------------EQALKF---VLEMPEKPNSDVWAAL 424
              +  A  L                         E+A +F   +L+M  KP+   +A +
Sbjct: 502 CGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATV 561

Query: 425 LSSCRLHDDVEMANIAANEIFK 446
           L +C     +E+      +I K
Sbjct: 562 LDTCANLATIELGKQIHGQIIK 583


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 151/444 (34%), Positives = 240/444 (54%), Gaps = 17/444 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           KIH  + K G++ +  I   L+  +LK G +++A   F+ELP R +  +N M+ GY + G
Sbjct: 157 KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIG 216

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           Q E  L   R++      P  +T + +L         V    N GR++H   +K    + 
Sbjct: 217 QFEMVLETFRRMNDESVVPSRFTVTGVLSVFA-----VMGDLNNGRIIHGFAMKMGYDSG 271

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS----QGFVEDAEEIFR 241
             +  +L+D Y K      A  +F+MM EK++    S++S         G +   + +  
Sbjct: 272 VAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLG 331

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVF------FEDVKLGSALVDMYA 295
             ++ D+V    ++   S  +       E+H  +I +         +DV L +A++DMYA
Sbjct: 332 AGIQPDLVTVTTVLPACS-HLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYA 390

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KCG + DA  VF+ M  K+V +W  MI GYG +G  N+ALE+F  M E  ++P+ VTF+G
Sbjct: 391 KCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVG 450

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            LSAC HAG V +GR     M+  Y + P +EHY C++D+LGRAG L++A +  L MP +
Sbjct: 451 VLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIE 510

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
            N  VW ALL++CRLH    +A +AA  +F+L   +  G+YV +SN   A G+++ V E+
Sbjct: 511 ANPVVWRALLAACRLHKHAVLAEVAAQRVFELEP-EHCGSYVLMSNVYGAVGRYEEVLEV 569

Query: 476 REKMKLRGVLKDTGCSWVGTESGL 499
           R  M+ + V K  GCSW+  ++G+
Sbjct: 570 RHTMRQQNVRKTPGCSWIELKNGV 593



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 195/405 (48%), Gaps = 22/405 (5%)

Query: 38  SLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLI-LHLKCGAL 96
           S   P   T+  ++LQ   +      G +IH+++   G   N+ +SI  LI ++ KC  +
Sbjct: 30  SFQQPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFL-NSPLSITSLINMYSKCNQM 88

Query: 97  KYAGQMF-DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
            +A  +F D   +  + A+N +I+G++ NG  EE     +K+ + G  PD +TF   +KA
Sbjct: 89  NFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKA 148

Query: 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
              C   + + +     +H  + K  ++ D  + +ALV+ Y+K G   +A++ F+ +  +
Sbjct: 149 ---CLDVLEIKK-----IHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIR 200

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE----V 271
           +V+   +M++G+   G  E   E FR+  ++ +V     + G  +S+      L     +
Sbjct: 201 DVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGV-LSVFAVMGDLNNGRII 259

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
           H   +K  +   V + ++L+DMY KC  I+DA  +F+ M++K++F+W S++  + + G+ 
Sbjct: 260 HGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDH 319

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE-----IFESMERDYSMKPKM 386
           +  L L   M    +QP+ VT    L AC H   +  GRE     I   + +D      +
Sbjct: 320 DGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDV 379

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
                ++D+  + GS+  A   V E     +   W  ++    +H
Sbjct: 380 LLKNAVIDMYAKCGSMRDA-HLVFERMSNKDVASWNIMIMGYGMH 423


>gi|298204424|emb|CBI16904.3| unnamed protein product [Vitis vinifera]
          Length = 843

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 149/437 (34%), Positives = 238/437 (54%), Gaps = 42/437 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           GL++H    K+  + N  ++  +L ++ KCGAL  A  +F+E+  R   ++N +IA + +
Sbjct: 381 GLQVHGLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQ 440

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  E++LSL                                       +H +I+K  + 
Sbjct: 441 NGNEEKTLSL--------------------------------------FIHNRIIKSRLG 462

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +  AL+D Y K G    A  + D + E+ V+   ++ISGF  Q   E+A++ F K 
Sbjct: 463 LDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKM 522

Query: 244 VEKDIVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           +E  +   N   A I     ++ T     ++H Q+IK     D  + S LVDMY+KCG +
Sbjct: 523 LEMGVDPDNFTYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYSKCGNM 582

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
            D + +F+    ++  TW +M+ GY ++G   +AL++F  MQ   V+PN+ TFL  L AC
Sbjct: 583 QDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRAC 642

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
           GH GLV+KG   F SM  +Y + P++EHY+C+VD++GR+G + +AL+ +  MP + ++ +
Sbjct: 643 GHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGMPFEADAVI 702

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W  LLS C++H +VE+A  AA  I +L   D   AYV LSN  A AG W+ VT+LR+ M+
Sbjct: 703 WRTLLSICKIHGNVEVAEKAAYSILQLEPED-SAAYVLLSNIYANAGMWNEVTKLRKMMR 761

Query: 481 LRGVLKDTGCSWVGTES 497
             G+ K+ GCSW+  +S
Sbjct: 762 FNGLKKEPGCSWIEIKS 778



 Score =  108 bits (270), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 109/477 (22%), Positives = 208/477 (43%), Gaps = 72/477 (15%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYM------ 117
           G + HA +  T  KP   ++  L+ +++KC  L++A ++FD +PQR   ++N M      
Sbjct: 61  GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGMPQRDTVSWNAMLFGYAG 120

Query: 118 -------------------------IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
                                    I+GYL NG   + + +  ++   G   D  TF+++
Sbjct: 121 RGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFLQMGRMGTVFDRTTFAVV 180

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           LK+ +    +       G  +H   +K     D V  +AL+D Y K  K   +   F  M
Sbjct: 181 LKSCSSLEDH-----GGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSM 235

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS---IETARKAL 269
            EKN +  +++I+G +    +    E+F++  +  + V  +       S   +   R   
Sbjct: 236 PEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFRSCAGLSALRLGS 295

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
           ++H   +K  F  DV +G+A +DMY KC  + DA+++F+ +   N+ ++ ++I GY ++ 
Sbjct: 296 QLHGHALKTDFGTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARS- 354

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME-RDYSMKPKMEH 388
             ++ L L           + V+  GA  AC     V KG    E ++    SMK   + 
Sbjct: 355 --DKGLGL-----------DEVSLSGAFRACA----VIKGD--LEGLQVHGLSMKSLCQS 395

Query: 389 YAC----MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVE--MANIAAN 442
             C    ++D+ G+ G+L +A     EM  + ++  W A++++   + + E  ++    N
Sbjct: 396 NICVANAILDMYGKCGALVEACLVFEEMVSR-DAVSWNAIIAAHEQNGNEEKTLSLFIHN 454

Query: 443 EIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
            I K          +AL +  +  G  +   +L +++  + V+     SW    SG 
Sbjct: 455 RIIKSRLGLDSFVGIALIDMYSKCGMMEKAEKLHDRLAEQTVV-----SWNAIISGF 506



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 87/387 (22%), Positives = 175/387 (45%), Gaps = 24/387 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH    K G   +      LL ++ KC  L  + Q F  +P++   +++ +IAG ++
Sbjct: 193 GIQIHGLAVKMGFDCDVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQ 252

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N  +   L L +++  +G      TF+ + ++   C     L   LG  +H   LK D  
Sbjct: 253 NDDLRGGLELFKEMQKAGVGVSQSTFASVFRS---CAGLSAL--RLGSQLHGHALKTDFG 307

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D V+ TA +D Y+K    S A+ +F+ +   N+    ++I G+         +E+    
Sbjct: 308 TDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQSYNAIIVGYARSDKGLGLDEVSLSG 367

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
             +   V    +EG           L+VH   +K++   ++ + +A++DMY KCG + +A
Sbjct: 368 AFRACAVIKGDLEG-----------LQVHGLSMKSLCQSNICVANAILDMYGKCGALVEA 416

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA--LSACG 361
             VF+ M  ++  +W ++I  + +NGN  + L LF   +    +    +F+G   +    
Sbjct: 417 CLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFIHNRIIKSRLGLDSFVGIALIDMYS 476

Query: 362 HAGLVDKGREIFESMERD--YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
             G+++K  ++ + +      S    +  ++    L  ++   ++    +LEM   P++ 
Sbjct: 477 KCGMMEKAEKLHDRLAEQTVVSWNAIISGFS----LQKQSEEAQKTFSKMLEMGVDPDNF 532

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFK 446
            +A +L +C     VE+      +I K
Sbjct: 533 TYATILDTCANLVTVELGKQIHAQIIK 559



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 69/252 (27%), Positives = 118/252 (46%), Gaps = 41/252 (16%)

Query: 148 TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARI 207
           TFS I +  +  ++  P     G+  HA+++  + K    +   L+  Y+K     +A  
Sbjct: 44  TFSHIFQECSDRKALCP-----GKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFK 98

Query: 208 VFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY--------- 258
           VFD M +++ +   +M+ G+  +G +  A+++F    E+D+V +N++I GY         
Sbjct: 99  VFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKV 158

Query: 259 -------------------------SISIETARKALEVHCQLIKNVFFEDVKLGSALVDM 293
                                      S+E     +++H   +K  F  DV  GSAL+DM
Sbjct: 159 IDVFLQMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDM 218

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           YAKC K+D + + F  M +KN  +W+++I G  +N +    LELF  MQ+  V  +  TF
Sbjct: 219 YAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTF 278

Query: 354 LGALSACGHAGL 365
                +C  AGL
Sbjct: 279 ASVFRSC--AGL 288


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 157/470 (33%), Positives = 250/470 (53%), Gaps = 12/470 (2%)

Query: 29  FPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLI 88
           F   ++ Y+ +    +  +  S L    N      G KIHA I+  G + + ++   LL 
Sbjct: 205 FEEAIRLYEDMDVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLT 264

Query: 89  LHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYT 148
           ++ +C  L  A ++F  LP+R + +++ MIA + +    +E++    K+   G RP+ YT
Sbjct: 265 MYARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYT 324

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIV 208
           F+ +L A   C S   L    GR VH QIL    K   V  TALVD Y   G    AR +
Sbjct: 325 FASVLLA---CASVGDL--RAGRAVHDQILGNGYKITLVNGTALVDLYTSYGSLDEARSL 379

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK-----TVEKDIVVYNAMIEGYSISIE 263
           FD +  ++    T +I G+  QG      E++R+      V    ++Y+ +I   + S+ 
Sbjct: 380 FDQIENRDEGLWTVLIGGYSKQGHRTGVLELYREMKNTTKVPATKIIYSCVISACA-SLG 438

Query: 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMID 323
               A + H  +  +    D  L ++LV+MY++ G ++ AR+VFD M  ++   WT++I 
Sbjct: 439 AFADARQAHSDIEADGMISDFVLATSLVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIA 498

Query: 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK 383
           GY K+G    AL L+  M+    +P+ +TF+  L AC HAGL ++G+++F S++ DY+M 
Sbjct: 499 GYAKHGEHGLALGLYKEMELEGAEPSELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMH 558

Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANE 443
           P + HY+C++DLL RAG L  A + +  MP +PN   W++LL + R+H DV+ A  AA +
Sbjct: 559 PNIAHYSCIIDLLSRAGRLSDAEELINAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQ 618

Query: 444 IFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           I KL+  D P +YV LSN  A  G    +  +R  M  RGV K  G SW+
Sbjct: 619 ITKLDPVD-PASYVLLSNVHAVTGNLAGMASVRNTMVARGVKKRRGSSWI 667



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 180/363 (49%), Gaps = 15/363 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IH  I+      N  +  +++  + KCG++  A   FD + ++   ++  M+  Y +NG
Sbjct: 45  QIHDRISGAA-SANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNG 103

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD-VKA 184
               +L L +++     +P+   ++ +L A   C S   L    G+ +H++I     +K 
Sbjct: 104 HYRAALDLYKRM---DLQPNPVVYTTVLGA---CASIEALEE--GKAIHSRISGTKGLKL 155

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS-TSMISGFMSQGFVEDAEEIFRKT 243
           D +L  +L+  Y K G    A+ +F+ M  +  + S  +MI+ +   G  E+A  ++   
Sbjct: 156 DVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM 215

Query: 244 -VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
            VE  +  + +++   S ++    +  ++H  +       D+ L +AL+ MYA+C  +DD
Sbjct: 216 DVEPSVRTFTSVLSACS-NLGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDD 274

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           A ++F  + +++V +W++MI  + +    ++A+E +  MQ   V+PNY TF   L AC  
Sbjct: 275 AAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACAS 334

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
            G +  GR + + +  +   K  + +   +VDL    GSL++A + + +  E  +  +W 
Sbjct: 335 VGDLRAGRAVHDQILGN-GYKITLVNGTALVDLYTSYGSLDEA-RSLFDQIENRDEGLWT 392

Query: 423 ALL 425
            L+
Sbjct: 393 VLI 395



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 142/267 (53%), Gaps = 24/267 (8%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           R +H +I      A+  L   +V +Y K G  + AR+ FD +  KN     SM++ +   
Sbjct: 44  RQIHDRISGA-ASANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQN 102

Query: 231 GFVEDAEEIFRKT-VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE-DVKLGS 288
           G    A +++++  ++ + VVY  ++ G   SIE   +   +H ++      + DV L +
Sbjct: 103 GHYRAALDLYKRMDLQPNPVVYTTVL-GACASIEALEEGKAIHSRISGTKGLKLDVILEN 161

Query: 289 ALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347
           +L+ MYAKCG ++DA+R+F+ M  +++V +W +MI  Y ++G+  +A+ L+   ++  V+
Sbjct: 162 SLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLY---EDMDVE 218

Query: 348 PNYVTFLGALSACGHAGLVDKGREIF-----ESMERDYSMKPKMEHYACMVDLLGRAGSL 402
           P+  TF   LSAC + GL+D+GR+I         E D S++        ++ +  R   L
Sbjct: 219 PSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQN------ALLTMYARCKCL 272

Query: 403 EQALKFVLEMPEKPNSDV--WAALLSS 427
           + A K    +P +   DV  W+A++++
Sbjct: 273 DDAAKIFQRLPRR---DVVSWSAMIAA 296



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/164 (27%), Positives = 83/164 (50%), Gaps = 13/164 (7%)

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           +V LG+ +V  Y KCG +  AR  FD + +KN ++W SM+  Y +NG+   AL+L+  M 
Sbjct: 57  NVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRMD 116

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
              +QPN V +   L AC     +++G+ I   +     +K  +     ++ +  + GSL
Sbjct: 117 ---LQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSL 173

Query: 403 EQALKFVLEMPEKPNSDVWAALLS----------SCRLHDDVEM 436
           E A +    M  + +   W A+++          + RL++D+++
Sbjct: 174 EDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDMDV 217


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 146/434 (33%), Positives = 254/434 (58%), Gaps = 13/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+++H    K  ++ +  IS  L+ ++ K G+ + A  +F+++  R + ++N MIA + +
Sbjct: 361 GMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFAR 420

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N    E++ LVR++ + GE P+  TF+ +L A  C R       N+G+ +HA+I++    
Sbjct: 421 NRLEYEAVELVRQMQAKGETPNNVTFTNVLPA--CARLGF---LNVGKEIHARIIRVGSS 475

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +  AL D Y K G  + A+ VF++ + ++ +    +I G+       ++  +F + 
Sbjct: 476 LDLFVSNALTDMYSKCGCLNLAQNVFNISV-RDEVSYNILIIGYSRTNDSLESLRLFSEM 534

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               +  DIV +  ++   + ++   R+  E+H  L++ +F   + + ++L+D+Y +CG+
Sbjct: 535 RLLGMRPDIVSFMGVVSACA-NLAFIRQGKEIHGLLVRKLFHTHLFVANSLLDLYTRCGR 593

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ID A +VF  +Q K+V +W +MI GYG  G  + A+ LF  M+E  V+ + V+F+  LSA
Sbjct: 594 IDLATKVFYCIQNKDVASWNTMILGYGMRGELDTAINLFEAMKEDGVEYDSVSFVAVLSA 653

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H GL++KGR+ F+ M  D +++P   HYACMVDLLGRAG +E+A   +  +   P+++
Sbjct: 654 CSHGGLIEKGRKYFKMM-CDLNIEPTHTHYACMVDLLGRAGLMEEAADLIRGLSIIPDTN 712

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +W ALL +CR+H ++E+   AA  +F+L      G Y+ LSN  A A +WD   ++RE M
Sbjct: 713 IWGALLGACRIHGNIELGLWAAEHLFELKPQ-HCGYYILLSNMYAEAERWDEANKVRELM 771

Query: 480 KLRGVLKDTGCSWV 493
           K RG  K+ GCSWV
Sbjct: 772 KSRGAKKNPGCSWV 785



 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 177/347 (51%), Gaps = 15/347 (4%)

Query: 67  IHAHITKTGV-KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +H +  K G+   +  +   L+ ++ KCG+ K + ++FDE+ +R + ++N +I  +   G
Sbjct: 262 VHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFSFRG 321

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           +  ++L + R ++  G RP+  T S +L         + L + LG  VH   LK  +++D
Sbjct: 322 KYMDALDVFRLMIDEGMRPNSVTISSMLPV----LGELGLFK-LGMEVHGFSLKMAIESD 376

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             +  +L+D Y K G +  A  +F+ M  +N++   +MI+ F       +A E+ R+   
Sbjct: 377 VFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQA 436

Query: 246 K-----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           K     ++   N +     +      K  E+H ++I+     D+ + +AL DMY+KCG +
Sbjct: 437 KGETPNNVTFTNVLPACARLGFLNVGK--EIHARIIRVGSSLDLFVSNALTDMYSKCGCL 494

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           + A+ VF+ +  ++  ++  +I GY +  +  ++L LF  M+   ++P+ V+F+G +SAC
Sbjct: 495 NLAQNVFN-ISVRDEVSYNILIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSAC 553

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALK 407
            +   + +G+EI   + R       +     ++DL  R G ++ A K
Sbjct: 554 ANLAFIRQGKEIHGLLVRKL-FHTHLFVANSLLDLYTRCGRIDLATK 599



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 109/421 (25%), Positives = 187/421 (44%), Gaps = 33/421 (7%)

Query: 25  PNQTFPPKLQNYDS--LSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNT-N 81
           P+ T P     + S   S  L  ++ P+ LQ     DT     ++HA+    G  P + +
Sbjct: 12  PSITTPLTKNTHFSSFFSTSLQTSNPPNLLQLCTLCDTLSQTKQVHAYSLLHGFLPRSVS 71

Query: 82  ISIKLLILHLKCGALKYAGQMFDELPQRTLSAY--NYMIAGYLKNGQVEESLSLVRKLVS 139
           +   L++ +   G    +  +F      + SA+  N +I      G V +       +V 
Sbjct: 72  LCASLILQYASFGHPSNSLLLFQHSVAYSRSAFLWNTLIRANSIAG-VFDGFGTYNTMVR 130

Query: 140 SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKG 199
           +G +PD  T+  +LK    C   V + +  GR VH    K     D  +   L+  Y   
Sbjct: 131 AGVKPDECTYPFVLKV---CSDFVEVRK--GREVHGVAFKLGFDGDVFVGNTLLAFYGNC 185

Query: 200 GKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV------EKDIVVYNA 253
           G    A  VFD M E++ +   ++I      GF E+A   FR  V      + D+V   +
Sbjct: 186 GLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVS 245

Query: 254 MIEGYSISIETARKALE--VHCQLIK-NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM 310
           ++    +  ET  K +   VHC  +K  +    VK+G+ALVD+Y KCG    +++VFD +
Sbjct: 246 VLP---VCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEI 302

Query: 311 QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR 370
            ++NV +W ++I  +   G    AL++F +M +  ++PN VT    L   G  GL   G 
Sbjct: 303 DERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGM 362

Query: 371 EIFESMERDYSMKPKMEHYA----CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           E+       +S+K  +E        ++D+  ++GS   A     +M  + N   W A+++
Sbjct: 363 EV-----HGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVR-NIVSWNAMIA 416

Query: 427 S 427
           +
Sbjct: 417 N 417


>gi|297817672|ref|XP_002876719.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322557|gb|EFH52978.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1005

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 150/433 (34%), Positives = 241/433 (55%), Gaps = 10/433 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+++HA++ K G   N  +   L+ ++ KC    Y G+ F  + ++ L ++  +IAGY  
Sbjct: 384 GMELHAYVIKHGWDSNLLVGNTLIDMYSKCNLTCYMGRAFLMMHEKDLISWTTIIAGYAL 443

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N    E+L L R +       D      IL+A +  +S + +     + +H  IL+  + 
Sbjct: 444 NDCHVEALQLFRDVAKKRMEIDEMMLGSILRACSVLKSMLIV-----KEIHCHILRKGL- 497

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D V+   LVD Y K     YA  VF+ +  K+V+  TSMIS     G   +A E+FR+ 
Sbjct: 498 IDTVIQNELVDVYGKCRNMGYASRVFESIKGKDVVSWTSMISSSALNGNENEAVELFRRM 557

Query: 244 VEKDIVVYNAM---IEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
            E  ++  +     I   + S+   +K  E+H  L++  F  +  +  A+VDMYA CG +
Sbjct: 558 AETGLLADSVALLCILSAAASLSALKKGREIHGYLLRKGFCLEGSIAVAVVDMYACCGDL 617

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
             A+ VFD +++K +  +TSMI+ YG +G    ++ELF  M+   V P++++FL  L AC
Sbjct: 618 QSAKAVFDRIERKGLLQYTSMINAYGMHGCGKASVELFNKMRHENVSPDHISFLALLYAC 677

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            HAGL+D+GR   + ME +Y ++P  EHY C+VD+LGRA  + +A +FV  M  +P ++V
Sbjct: 678 SHAGLLDEGRRFLKIMELEYKLEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTTEV 737

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W ALL++CR H + E+  IAA  + +L   + PG  V +SN  A  G+W+ V ++R KMK
Sbjct: 738 WCALLAACRSHSEKEIGEIAAQRLLELEPKN-PGNLVLVSNVFAEQGRWNDVEKVRAKMK 796

Query: 481 LRGVLKDTGCSWV 493
             G+ K  GCSW+
Sbjct: 797 ASGMEKHPGCSWI 809



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 208/426 (48%), Gaps = 21/426 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IHA + K+       +   L+ ++ +CG +  AG++   +    +  +N +I GY++
Sbjct: 283 GKEIHAAVLKSTHSFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQ 342

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N   +E+L     ++++G +PD  + + ++ AS    + +      G  +HA ++K    
Sbjct: 343 NLMYKEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLA-----GMELHAYVIKHGWD 397

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           ++ ++   L+D Y K   T Y    F MM EK++I  T++I+G+       +A ++FR  
Sbjct: 398 SNLLVGNTLIDMYSKCNLTCYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFRDV 457

Query: 244 VEKDIVVYNAMIEGYSISIETARKAL---EVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
            +K + +   M+     +    +  L   E+HC +++    + V + + LVD+Y KC  +
Sbjct: 458 AKKRMEIDEMMLGSILRACSVLKSMLIVKEIHCHILRKGLIDTV-IQNELVDVYGKCRNM 516

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
             A RVF+ ++ K+V +WTSMI     NGN N+A+ELF  M E  +  + V  L  LSA 
Sbjct: 517 GYASRVFESIKGKDVVSWTSMISSSALNGNENEAVELFRRMAETGLLADSVALLCILSAA 576

Query: 361 GHAGLVDKGREIFESMERD-YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
                + KGREI   + R  + ++  +     +VD+    G L+ A K V +  E+    
Sbjct: 577 ASLSALKKGREIHGYLLRKGFCLEGSIA--VAVVDMYACCGDLQSA-KAVFDRIERKGLL 633

Query: 420 VWAALLSSCRLHD----DVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
            + +++++  +H      VE+ N   +E    N +    +++AL    + AG  D     
Sbjct: 634 QYTSMINAYGMHGCGKASVELFNKMRHE----NVSPDHISFLALLYACSHAGLLDEGRRF 689

Query: 476 REKMKL 481
            + M+L
Sbjct: 690 LKIMEL 695



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 146/304 (48%), Gaps = 20/304 (6%)

Query: 79  NTNISIKLLILHLKCGALKYAGQ--MFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRK 136
           N+ I     +L L CG  +   Q  +FDE+  RT  A+N +I  Y+ NG+   +L + R 
Sbjct: 94  NSPIEAYAYLLEL-CGKSRALSQEKVFDEMRDRTAFAWNALIGAYVSNGEPASALFIYRN 152

Query: 137 LVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196
           +   G   D Y+F ++LKA    R         G  +H  ++K    +   +  ALV  Y
Sbjct: 153 MRVEGVPLDLYSFPVLLKACGKLRD-----IRSGTELHCMLVKLGFNSTGFIVNALVSMY 207

Query: 197 VKGGKTSYARIVFDMMLEK-NVICSTSMISGFMSQGFVEDAEEIFRK-------TVEKDI 248
            K    S A+ +FD   EK + +   S++S + + G   +  ++FR+       +    I
Sbjct: 208 AKTDHLSAAKRLFDASQEKGDAVLWNSILSSYSTSGKSLETLQLFREMQMTGPASNSYTI 267

Query: 249 VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFD 308
           V      EG+S     A+   E+H  ++K+    +V + +AL+ MYA+CGK+ +A R+  
Sbjct: 268 VSALTACEGFSY----AKLGKEIHAAVLKSTHSFEVYVCNALIAMYARCGKMLEAGRILR 323

Query: 309 HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDK 368
            M   +V TW S+I GY +N    +AL+ FC M     +P+ V+    ++A G    +  
Sbjct: 324 LMNNADVVTWNSLIKGYVQNLMYKEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLA 383

Query: 369 GREI 372
           G E+
Sbjct: 384 GMEL 387



 Score = 99.0 bits (245), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 78/302 (25%), Positives = 143/302 (47%), Gaps = 11/302 (3%)

Query: 42  PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQ 101
           PL   S P  L+          G ++H  + K G      I   L+ ++ K   L  A +
Sbjct: 159 PLDLYSFPVLLKACGKLRDIRSGTELHCMLVKLGFNSTGFIVNALVSMYAKTDHLSAAKR 218

Query: 102 MFDELPQRTLSA-YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           +FD   ++  +  +N +++ Y  +G+  E+L L R++  +G   + YT   I+ A T C 
Sbjct: 219 LFDASQEKGDAVLWNSILSSYSTSGKSLETLQLFREMQMTGPASNSYT---IVSALTACE 275

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
                   LG+ +HA +LK     +  +  AL+  Y + GK   A  +  +M   +V+  
Sbjct: 276 GFS--YAKLGKEIHAAVLKSTHSFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTW 333

Query: 221 TSMISGFMSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSISIETARKALEVHCQLI 276
            S+I G++     ++A + F   +    + D V   ++I   S  +      +E+H  +I
Sbjct: 334 NSLIKGYVQNLMYKEALQFFCDMIAAGHKPDEVSLTSVIAA-SGRLSNLLAGMELHAYVI 392

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           K+ +  ++ +G+ L+DMY+KC       R F  M +K++ +WT++I GY  N    +AL+
Sbjct: 393 KHGWDSNLLVGNTLIDMYSKCNLTCYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQ 452

Query: 337 LF 338
           LF
Sbjct: 453 LF 454


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  266 bits (679), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 139/434 (32%), Positives = 250/434 (57%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H+ + K  ++P++ + + L+ ++ KCG L+ A  +FD +P + +  +N +I+GY  
Sbjct: 308 GRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSN 367

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G   E++SL   +   G   +  T S ILK++   ++N          VH   +K   +
Sbjct: 368 CGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQAN-----GFCEQVHTISIKSGYQ 422

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +  +L+DSY K      A  VF++   ++++  TSMI+ +   G  E+A +++ + 
Sbjct: 423 YDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRM 482

Query: 244 VEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            ++DI     +++++    + ++    +  ++H  ++K     DV  G++LV+MYAKCG 
Sbjct: 483 QDRDIKPDAFIFSSLFNACA-NLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGS 541

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           IDDA  +F+ +  + + +W++MI G  ++G+  +AL+LF  M +  + PN++T +  LSA
Sbjct: 542 IDDASCIFNEISWRGIVSWSAMIGGLAQHGHGRKALQLFYQMLKNGILPNHITLVSVLSA 601

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C HAGLV + R  F  ME+ + + P  EHYACMVD+LGR G L++A+  V EMP + ++ 
Sbjct: 602 CNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVLVKEMPFQASAA 661

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW ALL + R+H ++E+   AA  +  L   ++ G ++ L+N  A+ G WD+V ++R  M
Sbjct: 662 VWGALLGAARIHKNIELGRHAAEMLLTLEP-EKSGTHILLANIYASTGMWDNVAKVRRSM 720

Query: 480 KLRGVLKDTGCSWV 493
           K   V K+ G SW+
Sbjct: 721 KNSLVKKEPGMSWI 734



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/320 (28%), Positives = 170/320 (53%), Gaps = 22/320 (6%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           YG+K+H ++ K G   +   +  LL ++ K G  + A  +F E+P+  + ++N +IAG +
Sbjct: 206 YGMKVHGYLIKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCV 265

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            + + + +L L+ K+ S    P  +T S  LKA     + + L + LGR +H+ ++K D+
Sbjct: 266 LHEKNDLALKLLGKMGSYRVAPSMFTLSSALKAC----AAIGLVK-LGRQLHSALMKMDM 320

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           + D  +   L+D Y K G    AR+VFD+M  K+VI   S+ISG+ + G+  +A  +F  
Sbjct: 321 EPDSFVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTN 380

Query: 243 TVEKDIVVYNAMIEGYSISIETARKAL----------EVHCQLIKNVFFEDVKLGSALVD 292
                  +Y   +E    ++ T  K+           +VH   IK+ +  D  + ++L+D
Sbjct: 381 -------MYKEGLEFNQTTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLD 433

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
            Y KC  ++DA +VF+    +++  +TSMI  Y + G   +AL+++  MQ+  ++P+   
Sbjct: 434 SYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFI 493

Query: 353 FLGALSACGHAGLVDKGREI 372
           F    +AC +    ++G++I
Sbjct: 494 FSSLFNACANLSAYEQGKQI 513



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 118/524 (22%), Positives = 213/524 (40%), Gaps = 83/524 (15%)

Query: 49  PSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ 108
           P  L  +  S     G+ IHA I + G+    N  + L   + KC   + A ++  +  +
Sbjct: 54  PKLLLQFTASKDVSSGMAIHARIIRLGLLGLRNRLVNL---YSKCQCFRVARKLVIDSSE 110

Query: 109 RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR- 167
             L +++ +I+GY++NG+ EE+L    ++   G + + +TFS +LK  +  R N+ L + 
Sbjct: 111 PDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTR-NLELGKQ 169

Query: 168 -----------------------------------NLGRMVHAQILKCDVKADDVLYTAL 192
                                              N G  VH  ++K    +D     AL
Sbjct: 170 IHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGYDSDPFSANAL 229

Query: 193 VDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDI 248
           +D Y K G    A  VF  + + +++   ++I+G +     + A ++  K     V   +
Sbjct: 230 LDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLALKLLGKMGSYRVAPSM 289

Query: 249 VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFD 308
              ++ ++  + +I   +   ++H  L+K     D  +G  L+DMY+KCG + DAR VFD
Sbjct: 290 FTLSSALKACA-AIGLVKLGRQLHSALMKMDMEPDSFVGVGLIDMYSKCGLLQDARMVFD 348

Query: 309 HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG------- 361
            M  K+V  W S+I GY   G   +A+ LF  M +  ++ N  T    L +         
Sbjct: 349 LMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILKSTAGSQANGF 408

Query: 362 ----HAGLVDKGRE-----------------IFESMERDYSMKPK--MEHYACMVDLLGR 398
               H   +  G +                 + E   + + + P   +  Y  M+    +
Sbjct: 409 CEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQ 468

Query: 399 AGSLEQALKFVLEMPE---KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA 455
            G  E+ALK  L M +   KP++ ++++L ++C      E        + K        A
Sbjct: 469 YGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKCGLLSDVFA 528

Query: 456 YVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
             +L N  A  G  D  + +  ++  RG++     SW     GL
Sbjct: 529 GNSLVNMYAKCGSIDDASCIFNEISWRGIV-----SWSAMIGGL 567



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 129/300 (43%), Gaps = 48/300 (16%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
           T+L + L+    S    +  ++H    K+G + +  ++  LL  + KC  L+ A ++F+ 
Sbjct: 391 TTLSTILKSTAGSQANGFCEQVHTISIKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEV 450

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
            P   L AY  MI  Y + G  EE+L +  ++     +PD + FS +  A     +N+  
Sbjct: 451 CPAEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNAC----ANLSA 506

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
               G+ +H  +LKC + +D     +LV+ Y K G    A  +F+ +  + ++  ++MI 
Sbjct: 507 YEQ-GKQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIG 565

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
           G    G                                  RKAL++  Q++KN    +  
Sbjct: 566 GLAQHGH--------------------------------GRKALQLFYQMLKNGILPN-- 591

Query: 286 LGSALVDMYAKC---GKIDDARRVFDHMQQKNVFT-----WTSMIDGYGKNGNPNQALEL 337
               LV + + C   G + +ARR F  M++    T     +  M+D  G+ G  ++A+ L
Sbjct: 592 -HITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEHYACMVDILGRVGRLDEAMVL 650


>gi|449461217|ref|XP_004148338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Cucumis sativus]
          Length = 619

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 154/439 (35%), Positives = 243/439 (55%), Gaps = 15/439 (3%)

Query: 68  HAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV 127
           H  + + G+  + ++S  L+ ++ +CG +  A ++FDE+ Q+ L ++N MI+GY K    
Sbjct: 150 HCSVIRRGLDEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHA 209

Query: 128 EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV 187
            E++ L R+++ +G +P+  +   +L A   C     L   LG  V   +++  +  +  
Sbjct: 210 GEAVGLFREMMEAGFQPNEMSLVSVLGA---CGELGDL--KLGTWVEEFVVENKMTLNYF 264

Query: 188 LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR-----K 242
           + +AL+  Y K G    AR +FD M +K+ +   +MI+G+   G  E+A ++F+      
Sbjct: 265 MGSALIHMYGKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSS 324

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
           T    I +   +    SI      K +E++    +  F +DV +G+ALVDMYAKCG +D+
Sbjct: 325 TAPDQITLIGILSACASIGALDLGKQVEIYAS--ERGFQDDVYVGTALVDMYAKCGSLDN 382

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF-CMMQEC-CVQPNYVTFLGALSAC 360
           A RVF  M  KN  +W +MI     +G   +AL LF  MM E   V PN +TF+G LSAC
Sbjct: 383 AFRVFYGMPNKNEVSWNAMISALAFHGQAQEALALFKSMMNEGGTVSPNDITFVGVLSAC 442

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            HAGLVD+GR +F  M   + + PK+EHY+CMVDL  RAG LE+A  FV+ MPEKP+  +
Sbjct: 443 VHAGLVDEGRRLFHMMSSSFGLVPKIEHYSCMVDLFSRAGHLEEAWDFVMTMPEKPDEVI 502

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
             ALL +C+   +++++      + +L  ++  G YV  S   A   +WD    +R  MK
Sbjct: 503 LGALLGACQKRKNIDISERVMKLLLELEPSN-SGNYVISSKLYANLRRWDDSARMRMLMK 561

Query: 481 LRGVLKDTGCSWVGTESGL 499
            +GV K  GCSW+   S L
Sbjct: 562 QKGVSKTPGCSWIDINSQL 580



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 115/383 (30%), Positives = 186/383 (48%), Gaps = 29/383 (7%)

Query: 66  KIHAHITKTGV-KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           +IHA +    + KPN   S    I  LK  A  YA   F  +   T  ++N MI G L  
Sbjct: 50  QIHAQLLTNSIHKPN---SFLYKIADLKDFA--YASVFFSNILDPTEYSFNVMIRG-LST 103

Query: 125 GQVEESLSL--VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
              + SL+L    ++   G +P+  T+  +  A     SN+    N GRM H  +++  +
Sbjct: 104 AWNKSSLALEFYSRMKFLGLKPNNLTYPFLFIAC----SNLLAVEN-GRMGHCSVIRRGL 158

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             D  +  +L+  Y + GK   AR VFD + +K+++   SMISG+       +A  +FR+
Sbjct: 159 DEDGHVSHSLITMYARCGKMGDARKVFDEISQKDLVSWNSMISGYSKMRHAGEAVGLFRE 218

Query: 243 TVEKD--------IVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
            +E          + V  A  E   + + T  +   V  ++  N F     +GSAL+ MY
Sbjct: 219 MMEAGFQPNEMSLVSVLGACGELGDLKLGTWVEEFVVENKMTLNYF-----MGSALIHMY 273

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
            KCG +  ARR+FD M++K+  TW +MI GY +NG   +A++LF  M+     P+ +T +
Sbjct: 274 GKCGDLVSARRIFDSMKKKDKVTWNAMITGYAQNGMSEEAIKLFQDMRMSSTAPDQITLI 333

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
           G LSAC   G +D G+++ E    +   +  +     +VD+  + GSL+ A +    MP 
Sbjct: 334 GILSACASIGALDLGKQV-EIYASERGFQDDVYVGTALVDMYAKCGSLDNAFRVFYGMPN 392

Query: 415 KPNSDVWAALLSSCRLHDDVEMA 437
           K N   W A++S+   H   + A
Sbjct: 393 K-NEVSWNAMISALAFHGQAQEA 414


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 154/458 (33%), Positives = 257/458 (56%), Gaps = 21/458 (4%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           LT TS+  A  H    D  F G  +H ++  +G + +T  S  L+ ++ KCG L  + ++
Sbjct: 376 LTITSILQACGHL--GDLEF-GKYVHDYMITSGYECDTTASNILINMYAKCGNLLASQEV 432

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           F  +  +   ++N MI  Y++NG  +E++ L  K++ +  +PD  T+ M+L  ST     
Sbjct: 433 FSGMKCKDSVSWNSMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGD- 490

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
                 LG+ +H  + K    ++ V+   LVD Y K G+   +  VF+ M  +++I   +
Sbjct: 491 ----LXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNT 546

Query: 223 MISGFMSQGFVEDAEEIFR-------KTVEKDIVVYNAMIEGYSISIETARKALEVHCQL 275
           +I+  +     ED     R       + V  D+    +++   S+ +   R+  E+H  +
Sbjct: 547 IIASCVHS---EDCNLGLRMISRMRTEGVTPDMATMLSILPVCSL-LAAKRQGKEIHGCI 602

Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
            K     DV +G+ L++MY+KCG + ++ +VF  M+ K+V TWT++I   G  G   +A+
Sbjct: 603 FKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAV 662

Query: 336 ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDL 395
             F  M+   + P++V F+  + AC H+GLV++G   F  M++DY ++P++EHYAC+VDL
Sbjct: 663 RAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDL 722

Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA 455
           L R+  L++A  F+L MP KP+S +W ALLS+CR+  D E+A   +  I +LN +D  G 
Sbjct: 723 LSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDD-TGY 781

Query: 456 YVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           YV +SN  AA GKWD V  +R+ +K RG+ KD GCSW+
Sbjct: 782 YVLVSNVYAALGKWDQVRSIRKSIKARGLKKDPGCSWM 819



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 190/376 (50%), Gaps = 16/376 (4%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           IH  +   G   +  I   L+ ++ +   L  A ++F+E+P R + ++N +I+GY  NG 
Sbjct: 196 IHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGY 255

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
             E+L +  +  + G  PD YT S +L+A   C     +    G ++H  I K  +K D 
Sbjct: 256 WNEALEIYYRFRNLGVVPDSYTMSSVLRA---CGGLGSVEE--GDIIHGLIEKIGIKKDV 310

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
           ++   L+  Y K       R +FD M+ ++ +   +MI G+   G  E++ ++F + V +
Sbjct: 311 IVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ 370

Query: 247 ---DIVVYNAMIE--GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
              D++   ++++  G+   +E  +    VH  +I + +  D    + L++MYAKCG + 
Sbjct: 371 FKPDLLTITSILQACGHLGDLEFGKY---VHDYMITSGYECDTTASNILINMYAKCGNLL 427

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            ++ VF  M+ K+  +W SMI+ Y +NG+ ++A++LF MM+   V+P+ VT++  LS   
Sbjct: 428 ASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKT-DVKPDSVTYVMLLSMST 486

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
             G +  G+E+   + +       +     +VD+  + G +  +LK V E  +  +   W
Sbjct: 487 QLGDLXLGKELHCDLAK-MGFNSNIVVSNTLVDMYAKCGEMGDSLK-VFENMKARDIITW 544

Query: 422 AALLSSCRLHDDVEMA 437
             +++SC   +D  + 
Sbjct: 545 NTIIASCVHSEDCNLG 560



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 101/423 (23%), Positives = 186/423 (43%), Gaps = 59/423 (13%)

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P   +  +N +I     NG   E+LSL  +      +PD YTF  ++ A         L 
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGL-----LD 189

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
             + + +H ++L     +D  +  AL+D Y +      AR VF+ M  ++V+   S+ISG
Sbjct: 190 FEMAKSIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISG 249

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS--------IETARKALEVHCQLIKN 278
           + + G+  +A EI+ +     +V      + Y++S        + +  +   +H  + K 
Sbjct: 250 YNANGYWNEALEIYYRFRNLGVVP-----DSYTMSSVLRACGGLGSVEEGDIIHGLIEKI 304

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
              +DV + + L+ MY K   + D RR+FD M  ++  +W +MI GY + G   ++++LF
Sbjct: 305 GIKKDVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLF 364

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM---------------------- 376
             M     +P+ +T    L ACGH G ++ G+ + + M                      
Sbjct: 365 MEMVN-QFKPDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTTASNILINMYAKC 423

Query: 377 -------ERDYSMKPKME-HYACMVDLLGRAGSLEQALKF--VLEMPEKPNSDVWAALLS 426
                  E    MK K    +  M+++  + GS ++A+K   +++   KP+S  +  LLS
Sbjct: 424 GNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTDVKPDSVTYVMLLS 483

Query: 427 SCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL----AAAGKWDSVTELREKMKLR 482
                 D+ +      ++ K+  N      + +SNTL    A  G+     ++ E MK R
Sbjct: 484 MSTQLGDLXLGKELHCDLAKMGFNSN----IVVSNTLVDMYAKCGEMGDSLKVFENMKAR 539

Query: 483 GVL 485
            ++
Sbjct: 540 DII 542


>gi|297819260|ref|XP_002877513.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323351|gb|EFH53772.1| hypothetical protein ARALYDRAFT_905886 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 657

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 150/439 (34%), Positives = 244/439 (55%), Gaps = 15/439 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           GL++H HI   G   +  ++ KL+ ++   G++ YA ++FD+  +RT+  +N +      
Sbjct: 96  GLRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTL 155

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKA---STCCRSNVPLPRNLGRMVHAQILKC 180
            G  EE L L  K+   G   D +T++ +LKA   S C   ++      G+ +HA + + 
Sbjct: 156 AGHGEEVLGLYWKMNRIGVESDRFTYTYVLKACVASECTADHL----TKGKEIHAHLTRR 211

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
              +   + T LVD Y + G   YA  VF+ M  +NV+  ++MI+ +   G   +A   F
Sbjct: 212 GYNSHVYIMTTLVDMYARFGCVDYASYVFNGMPVRNVVSWSAMIACYAKNGKAFEALRTF 271

Query: 241 RK--TVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
           R+  T  KD     V   ++++  + S+    +   +H  +++      + + SALV MY
Sbjct: 272 REMMTETKDSSPNSVTMVSVLQACA-SLAALEQGRLIHGYILRRGLDSILPVISALVTMY 330

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
            +CGK+D  +RVFD M  ++V +W S+I  YG +G   +A+++F  M      P  VTF+
Sbjct: 331 GRCGKLDVGQRVFDRMHDRDVVSWNSLISSYGVHGYGRKAIQIFEEMLANGASPTPVTFV 390

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             L AC H GLV++G+ +FESM RD+ +KP++EHYACMVDLLGRA  L++A K V +M  
Sbjct: 391 SVLGACSHEGLVEEGKRLFESMWRDHGIKPQVEHYACMVDLLGRANRLDEAAKMVQDMRT 450

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
           +P   VW +LL SCR+H +VE+A  A+  +F L   +  G YV L++  A A  WD V  
Sbjct: 451 EPGPKVWGSLLGSCRIHGNVELAERASRRLFALEPKN-AGNYVLLADIYAEAQMWDEVKR 509

Query: 475 LREKMKLRGVLKDTGCSWV 493
           +++ ++ RG+ K  G  W+
Sbjct: 510 VKKLLEHRGLQKLPGRCWM 528


>gi|221327716|gb|ACM17537.1| putative pentatricopeptide [Oryza australiensis]
          Length = 470

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 143/437 (32%), Positives = 250/437 (57%), Gaps = 18/437 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G + HA     G  P+  +   L++L+ +CG  + A ++FD +P  ++ AYN ++A    
Sbjct: 25  GAQAHARAVVGGWLPDATLETDLVLLYCRCGERERARRVFDRMPAPSMHAYNVLLAA--- 81

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRN-LGRMVHAQILKCDV 182
                 ++ +  +L+++   PD Y+   +++A T       LP   LG ++H   ++  +
Sbjct: 82  -SPPRYAMEIFSRLLAADLLPDRYSVPAMVRACT------ELPDAVLGAVIHGFAVRLGL 134

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            A+ V+  A +D Y K      A  VFD M E++ I    M++G+   G   +  +IF +
Sbjct: 135 MANVVVAAAFLDMYAKAVLLDDAVRVFDEMPERDAIVWNCMVTGYARAGRAAETFDIFSR 194

Query: 243 TVEKDIVVYNAMIEGYSISIETAR-----KALEVHCQLIKNVFFE-DVKLGSALVDMYAK 296
              + + + N +    S+    A+     K  E+H  +++ + F+ D+ +G+AL++MYAK
Sbjct: 195 AQVEAVNIVNGLQAVPSVLNICAKESELMKGREIHGMMVRCLAFDSDIAVGNALINMYAK 254

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG+++ ++ VF  MQ+++V +W++MI  Y  +G   QAL+++  M    V+PN++TF   
Sbjct: 255 CGRVNVSQAVFSGMQERDVVSWSTMIHSYSIHGKGEQALKVYMEMLSQGVKPNWITFTSV 314

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           LS+C H+GLV +G++IFESM + + + P  EHYACMVDLLGRAG++E+A+  + +MP +P
Sbjct: 315 LSSCSHSGLVTEGQKIFESMTKVHGVHPATEHYACMVDLLGRAGAIEEAVGLIRKMPMEP 374

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
            + VW ALLS+C +H++V++  IAA  +F+L        YV L     A G+ D V  LR
Sbjct: 375 CASVWGALLSACAMHNNVDVGEIAAFRLFELEEGSASN-YVTLCGIYDAVGQSDGVAGLR 433

Query: 477 EKMKLRGVLKDTGCSWV 493
            +M+  G++K   CS +
Sbjct: 434 SRMRELGMVKTPACSRI 450



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 151/343 (44%), Gaps = 25/343 (7%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           S+P+ ++          G  IH    + G+  N  ++   L ++ K   L  A ++FDE+
Sbjct: 105 SVPAMVRACTELPDAVLGAVIHGFAVRLGLMANVVVAAAFLDMYAKAVLLDDAVRVFDEM 164

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLV-RKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           P+R    +N M+ GY + G+  E+  +  R  V +    +G     +      C     L
Sbjct: 165 PERDAIVWNCMVTGYARAGRAAETFDIFSRAQVEAVNIVNG--LQAVPSVLNICAKESEL 222

Query: 166 PRNLGRMVHAQILKC-DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
            +  GR +H  +++C    +D  +  AL++ Y K G+ + ++ VF  M E++V+  ++MI
Sbjct: 223 MK--GREIHGMMVRCLAFDSDIAVGNALINMYAKCGRVNVSQAVFSGMQERDVVSWSTMI 280

Query: 225 SGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSIS--IETARKALEVHCQLIKN 278
             +   G  E A     E+  + V+ + + + +++   S S  +   +K  E   ++  +
Sbjct: 281 HSYSIHGKGEQALKVYMEMLSQGVKPNWITFTSVLSSCSHSGLVTEGQKIFESMTKV--H 338

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT-WTSMIDGYGKNGNPN----Q 333
                 +  + +VD+  + G I++A  +   M  +   + W +++     + N +     
Sbjct: 339 GVHPATEHYACMVDLLGRAGAIEEAVGLIRKMPMEPCASVWGALLSACAMHNNVDVGEIA 398

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGH----AGLVDKGREI 372
           A  LF + +      NYVT  G   A G     AGL  + RE+
Sbjct: 399 AFRLFELEEGS--ASNYVTLCGIYDAVGQSDGVAGLRSRMREL 439



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 35/161 (21%), Positives = 71/161 (44%), Gaps = 6/161 (3%)

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
           R   + H + +   +  D  L + LV +Y +CG+ + ARRVFD M   ++  +  ++   
Sbjct: 23  RPGAQAHARAVVGGWLPDATLETDLVLLYCRCGERERARRVFDRMPAPSMHAYNVLL--- 79

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
                P  A+E+F  +    + P+  +    + AC        G  +         +   
Sbjct: 80  -AASPPRYAMEIFSRLLAADLLPDRYSVPAMVRACTELPDAVLG-AVIHGFAVRLGLMAN 137

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           +   A  +D+  +A  L+ A++   EMPE+ ++ VW  +++
Sbjct: 138 VVVAAAFLDMYAKAVLLDDAVRVFDEMPER-DAIVWNCMVT 177


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 151/444 (34%), Positives = 240/444 (54%), Gaps = 17/444 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           KIH  + K G++ +  I   L+  +LK G +++A   F+ELP R +  +N M+ GY + G
Sbjct: 157 KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIG 216

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           Q E  L   R++      P  +T + +L         V    N GR++H   +K    + 
Sbjct: 217 QFEMVLETFRRMNDESVVPSRFTVTGVLSVFA-----VMGDLNNGRIIHGFAMKMGYDSG 271

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS----QGFVEDAEEIFR 241
             +  +L+D Y K      A  +F+MM EK++    S++S         G +   + +  
Sbjct: 272 VAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLG 331

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVF------FEDVKLGSALVDMYA 295
             ++ D+V    ++   S  +       E+H  +I +         +DV L +A++DMYA
Sbjct: 332 AGIQPDLVTVTTVLPACS-HLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYA 390

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KCG + DA  VF+ M  K+V +W  MI GYG +G  N+ALE+F  M E  ++P+ VTF+G
Sbjct: 391 KCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVG 450

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            LSAC HAG V +GR     M+  Y + P +EHY C++D+LGRAG L++A +  L MP +
Sbjct: 451 VLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIE 510

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
            N  VW ALL++CRLH    +A +AA  +F+L   +  G+YV +SN   A G+++ V E+
Sbjct: 511 ANPVVWRALLAACRLHKHAVLAEVAAQRVFELEP-EHCGSYVLMSNVYGAVGRYEEVLEV 569

Query: 476 REKMKLRGVLKDTGCSWVGTESGL 499
           R  M+ + V K  GCSW+  ++G+
Sbjct: 570 RHTMRQQNVRKTPGCSWIELKNGV 593



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 105/419 (25%), Positives = 200/419 (47%), Gaps = 29/419 (6%)

Query: 31  PKLQNYDSLS-------NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNIS 83
           P   N+ S+S        P   T+  ++LQ   +      G +IH+++   G   N+ +S
Sbjct: 16  PLFFNFSSISTAIQSFQQPYNLTTCIASLQASAHHKNLSKGKEIHSYMLINGFL-NSPLS 74

Query: 84  IKLLI-LHLKCGALKYAGQMF-DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG 141
           I  LI ++ KC  + +A  +F D   +  + A+N +I+G++ NG  EE     +K+ + G
Sbjct: 75  ITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEG 134

Query: 142 ERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK 201
             PD +TF   +KA   C   + + +     +H  + K  ++ D  + +ALV+ Y+K G 
Sbjct: 135 VIPDKFTFPCAIKA---CLDVLEIKK-----IHGLLFKFGLELDVFIGSALVNCYLKFGL 186

Query: 202 TSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS 261
             +A++ F+ +  ++V+   +M++G+   G  E   E FR+  ++ +V     + G  +S
Sbjct: 187 MEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTG-VLS 245

Query: 262 IETARKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT 317
           +      L     +H   +K  +   V + ++L+DMY KC  I+DA  +F+ M++K++F+
Sbjct: 246 VFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFS 305

Query: 318 WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE-----I 372
           W S++  + + G+ +  L L   M    +QP+ VT    L AC H   +  GRE     I
Sbjct: 306 WNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMI 365

Query: 373 FESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
              + +D      +     ++D+  + GS+  A   V E     +   W  ++    +H
Sbjct: 366 VSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDA-HLVFERMSNKDVASWNIMIMGYGMH 423


>gi|297729323|ref|NP_001177025.1| Os12g0577900 [Oryza sativa Japonica Group]
 gi|255670427|dbj|BAH95753.1| Os12g0577900, partial [Oryza sativa Japonica Group]
          Length = 614

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 151/436 (34%), Positives = 236/436 (54%), Gaps = 28/436 (6%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +H+H+ K G   +T +   L+  + K G    A ++FDE+P+R + ++N  +A  ++ G+
Sbjct: 150 VHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGE 209

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
               L+ VRKL       D  +++ IL   T             RM    +         
Sbjct: 210 ----LAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNV--------- 256

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK---- 242
           V ++ +V  Y K G    AR++FD M  KN++  T M+S    +G V++A ++F +    
Sbjct: 257 VSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEA 316

Query: 243 TVEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
           +VE D+     +  A  E  S+S+        +H  + K        + +AL+DM+ KCG
Sbjct: 317 SVELDVAAVVSILAACAESGSLSL-----GKRIHRYVRKRNLGRSTHVCNALIDMFCKCG 371

Query: 299 KIDDARRVFD-HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
            ++ A  VFD    QK+  +W S+I G+  +G+ ++ALELF  M++    P+ VT +  L
Sbjct: 372 CVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVL 431

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           SAC H G VD+GR  F +MERDY + P++EHY CM+DLLGR G +++A+  +  MP +PN
Sbjct: 432 SACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPN 491

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
             +W +LLS+CRLH +VE A IA NE+ KL  ++  G Y  LSN  A AG+W  + + R 
Sbjct: 492 EVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSN-AGNYAVLSNIYAEAGQWSDMAKARM 550

Query: 478 KMKLRGVLKDTGCSWV 493
           +MK  G  K  G SWV
Sbjct: 551 QMKGTGSQKTAGSSWV 566



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 147/290 (50%), Gaps = 14/290 (4%)

Query: 143 RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKT 202
           R D +T+S ++KA +      P+     R VH+ ++K     D  +  AL+D+Y K G  
Sbjct: 126 RRDSFTYSFLIKALSAA-GVAPV-----RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGF 179

Query: 203 SYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISI 262
           S AR VFD M E++V+   + ++  + +G +    ++F +  EKD V +N +++GY+ + 
Sbjct: 180 SDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAG 239

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
           E     +E   +L + +   +V   S +V  Y K G ++ AR +FD M  KN+ TWT M+
Sbjct: 240 E-----VEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMV 294

Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382
               + G  ++A +LF  M+E  V+ +    +  L+AC  +G +  G+ I   + R  ++
Sbjct: 295 SACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYV-RKRNL 353

Query: 383 KPKMEHYACMVDLLGRAGSLEQA-LKFVLEMPEKPNSDVWAALLSSCRLH 431
                    ++D+  + G + +A   F  E  +K +S  W +++    +H
Sbjct: 354 GRSTHVCNALIDMFCKCGCVNRADYVFDTETVQK-DSVSWNSIIGGFAMH 402



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD-ELPQRTLSAYNYMIAGYL 122
           G +IH ++ K  +  +T++   L+ +  KCG +  A  +FD E  Q+   ++N +I G+ 
Sbjct: 341 GKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFA 400

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
            +G  +++L L  ++   G  PD  T   +L A T
Sbjct: 401 MHGHGDKALELFAQMKQQGFNPDAVTMINVLSACT 435


>gi|225433310|ref|XP_002282466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Vitis vinifera]
          Length = 625

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 151/445 (33%), Positives = 248/445 (55%), Gaps = 19/445 (4%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           F G  IH    + G   +T ++  ++ ++ KCG  + + ++FDE+  R   ++N +IAGY
Sbjct: 141 FSGKSIHGKSIRIGFVSDTVVANSIMSMYCKCGNFEESRKVFDEMTIRNSGSWNVLIAGY 200

Query: 122 LKNGQV---EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
             +G     EE+   V+++     RPD YT S +L      +       + GR +H  I+
Sbjct: 201 AVSGNCNFREETWEFVKQMQMDEVRPDAYTISSLLPLCDGDKGK----WDYGRELHCYIV 256

Query: 179 KCDV----KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVE 234
           K ++     +D  L   L+D Y +  K    R VFD M  +NV   T+MI+G++  G  +
Sbjct: 257 KNELVLGLDSDVHLGCCLIDMYSRSNKVVVGRRVFDRMKCRNVFSWTAMINGYVENGDSD 316

Query: 235 DAEEIFRKT-----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSA 289
           +A  +FR       +E + V   +++   S S        ++H   ++     +V L +A
Sbjct: 317 EALSLFRDMQVIDGIEPNRVSLVSVLPACS-SFSGLLSGRQIHGFAVRKELNNEVSLCNA 375

Query: 290 LVDMYAKCGKIDDARRVF-DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348
           L+DMY+KCG +D ARRVF D    K+  +W+SMI GYG +G   +A+ L+  M +  ++P
Sbjct: 376 LIDMYSKCGSLDSARRVFEDDSLCKDAISWSSMISGYGLHGKGQEAILLYDKMLQAGIRP 435

Query: 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKF 408
           + +T +G LSAC  +GLV++G  I+ S+  DY ++P +E +AC+VD+LGRAG L+ AL F
Sbjct: 436 DMITTVGILSACSRSGLVNEGLNIYSSVINDYGIEPTLEIFACIVDMLGRAGQLDPALDF 495

Query: 409 VLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGK 468
           +  MP +P   VW AL+S   +H D+EM  +A   + +L   + P  YV++SN  A++ +
Sbjct: 496 IKAMPVEPGPSVWGALVSCSIIHGDLEMQELAYRFLIQLEP-ENPSNYVSISNLYASSRR 554

Query: 469 WDSVTELREKMKLRGVLKDTGCSWV 493
           WD+V E+R  MK + + K  GCSW+
Sbjct: 555 WDAVAEVRRMMKDKRLRKVPGCSWI 579



 Score =  155 bits (392), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 124/451 (27%), Positives = 211/451 (46%), Gaps = 40/451 (8%)

Query: 21  TLVPPNQ-----TFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTG 75
           TL+P         F P L    SL   +T  SL    Q              H+ I   G
Sbjct: 7   TLIPSRYYASAFEFDPSLALLQSLHFSVTHKSLKLTRQS-------------HSRILSLG 53

Query: 76  VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVR 135
           +  N+ ++ KL+  +  C    ++  +FD L  + +  +N +I GY KN    E+  L  
Sbjct: 54  LSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFLWNSLINGYAKNRLYNEAFQLFN 113

Query: 136 KLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDS 195
           ++ SS   PD +T S + K S+   +        G+ +H + ++    +D V+  +++  
Sbjct: 114 QMCSSDVLPDDFTLSTLSKVSSELGALFS-----GKSIHGKSIRIGFVSDTVVANSIMSM 168

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG---FVEDAEEIFRKTVEKDIVVYN 252
           Y K G    +R VFD M  +N      +I+G+   G   F E+  E F K ++ D V  +
Sbjct: 169 YCKCGNFEESRKVFDEMTIRNSGSWNVLIAGYAVSGNCNFREETWE-FVKQMQMDEVRPD 227

Query: 253 AMIEGYSISIETARK-----ALEVHCQLIKNVFF----EDVKLGSALVDMYAKCGKIDDA 303
           A      + +    K       E+HC ++KN        DV LG  L+DMY++  K+   
Sbjct: 228 AYTISSLLPLCDGDKGKWDYGRELHCYIVKNELVLGLDSDVHLGCCLIDMYSRSNKVVVG 287

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC-CVQPNYVTFLGALSACGH 362
           RRVFD M+ +NVF+WT+MI+GY +NG+ ++AL LF  MQ    ++PN V+ +  L AC  
Sbjct: 288 RRVFDRMKCRNVFSWTAMINGYVENGDSDEALSLFRDMQVIDGIEPNRVSLVSVLPACSS 347

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
              +  GR+I     R   +  ++     ++D+  + GSL+ A +   +     ++  W+
Sbjct: 348 FSGLLSGRQIHGFAVRK-ELNNEVSLCNALIDMYSKCGSLDSARRVFEDDSLCKDAISWS 406

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRP 453
           +++S   LH   + A +  +++  L A  RP
Sbjct: 407 SMISGYGLHGKGQEAILLYDKM--LQAGIRP 435



 Score = 66.6 bits (161), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 100/223 (44%), Gaps = 8/223 (3%)

Query: 258 YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT 317
           +S++ ++ +   + H +++     ++  L + L+  YA C     +R VFD +Q KNVF 
Sbjct: 32  FSVTHKSLKLTRQSHSRILSLGLSQNSLLATKLIFAYAICQHPYHSRLVFDSLQHKNVFL 91

Query: 318 WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377
           W S+I+GY KN   N+A +LF  M    V P+  T           G +  G+ I     
Sbjct: 92  WNSLINGYAKNRLYNEAFQLFNQMCSSDVLPDDFTLSTLSKVSSELGALFSGKSIHGKSI 151

Query: 378 RDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           R   +   +   + M  +  + G+ E++ K   EM  + NS  W  L++   +  +    
Sbjct: 152 RIGFVSDTVVANSIM-SMYCKCGNFEESRKVFDEMTIR-NSGSWNVLIAGYAVSGNCNFR 209

Query: 438 NIAANEIFKLNAND-RPGAYVALSNTL----AAAGKWDSVTEL 475
                 + ++  ++ RP AY  +S+ L       GKWD   EL
Sbjct: 210 EETWEFVKQMQMDEVRPDAY-TISSLLPLCDGDKGKWDYGREL 251


>gi|34365551|gb|AAQ65087.1| At4g14850 [Arabidopsis thaliana]
          Length = 634

 Score =  265 bits (678), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 160/482 (33%), Positives = 247/482 (51%), Gaps = 32/482 (6%)

Query: 18  RHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVK 77
           R   +VP + TFP   +   SL  P+T                   G +IHA   K G  
Sbjct: 50  RREGVVPNDFTFPCAFKAVASLRLPVT-------------------GKQIHALAVKCGRI 90

Query: 78  PNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL 137
            +  +      ++ K      A ++FDE+P+R L  +N  I+  + +G+  E++    + 
Sbjct: 91  LDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEF 150

Query: 138 VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYV 197
                 P+  TF   L A   C   + L  NLG  +H  +L+     D  +   L+D Y 
Sbjct: 151 RRIDGHPNSITFCAFLNA---CSDWLHL--NLGMQLHGLVLRSGFDTDVSVCNGLIDFYG 205

Query: 198 KGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEG 257
           K  +   + I+F  M  KN +   S+++ ++     E A  ++ ++  KDIV  +  +  
Sbjct: 206 KCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRS-RKDIVETSDFMIS 264

Query: 258 YSISIETARKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK 313
             +S       LE    +H   +K      + +GSALVDMY KCG I+D+ + FD M +K
Sbjct: 265 SVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEK 324

Query: 314 NVFTWTSMIDGYGKNGNPNQALELFCMM--QECCVQPNYVTFLGALSACGHAGLVDKGRE 371
           N+ T  S+I GY   G  + AL LF  M  + C   PNY+TF+  LSAC  AG V+ G +
Sbjct: 325 NLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMK 384

Query: 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           IF+SM   Y ++P  EHY+C+VD+LGRAG +E+A +F+ +MP +P   VW AL ++CR+H
Sbjct: 385 IFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMH 444

Query: 432 DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
              ++  +AA  +FKL+  D  G +V LSNT AAAG+W     +RE++K  G+ K  G S
Sbjct: 445 GKPQLGLLAAENLFKLDPKD-SGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYS 503

Query: 492 WV 493
           W+
Sbjct: 504 WI 505



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 174/385 (45%), Gaps = 24/385 (6%)

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P R + ++  +I+G  +NG    +L    ++   G  P+ +TF    KA    R    LP
Sbjct: 19  PARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLR----LP 74

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
              G+ +HA  +KC    D  +  +  D Y K      AR +FD + E+N+    + IS 
Sbjct: 75  VT-GKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISN 133

Query: 227 FMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
            ++ G   +A E F    R     + + + A +   S  +      +++H  ++++ F  
Sbjct: 134 SVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHL-NLGMQLHGLVLRSGFDT 192

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           DV + + L+D Y KC +I  +  +F  M  KN  +W S++  Y +N    +A  L+   +
Sbjct: 193 DVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRSR 252

Query: 343 ECCVQPNYVTFLGALSAC-GHAGLVDKGREIFESMERDYSMKPKMEHY----ACMVDLLG 397
           +  V+ +       LSAC G AGL + GR I       +++K  +E      + +VD+ G
Sbjct: 253 KDIVETSDFMISSVLSACAGMAGL-ELGRSI-----HAHAVKACVERTIFVGSALVDMYG 306

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG--A 455
           + G +E + +   EMPEK N     +L+        V+MA     E+        P    
Sbjct: 307 KCGCIEDSEQAFDEMPEK-NLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMT 365

Query: 456 YVALSNTLAAAGKWDSVTELREKMK 480
           +V+L +  + AG  ++  ++ + M+
Sbjct: 366 FVSLLSACSRAGAVENGMKIFDSMR 390



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 112/259 (43%), Gaps = 29/259 (11%)

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG-----FVEDAEEIFRKTVEKDIVV 250
           Y K      AR+V  +   +NV+  TS+ISG    G      VE  E      V  D   
Sbjct: 2   YSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTF 61

Query: 251 YNAMIEGYSISIETARK---ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVF 307
             A     S+ +    K   AL V C  I +VF     +G +  DMY K    DDAR++F
Sbjct: 62  PCAFKAVASLRLPVTGKQIHALAVKCGRILDVF-----VGCSAFDMYCKTRLRDDARKLF 116

Query: 308 DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG-----H 362
           D + ++N+ TW + I     +G P +A+E F   +     PN +TF   L+AC      +
Sbjct: 117 DEIPERNLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHLN 176

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYAC--MVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            G+   G  +    + D S+        C  ++D  G+   +  +     EM  K N+  
Sbjct: 177 LGMQLHGLVLRSGFDTDVSV--------CNGLIDFYGKCKQIRSSEIIFTEMGTK-NAVS 227

Query: 421 WAALLSSCRLHDDVEMANI 439
           W +L+++   + + E A++
Sbjct: 228 WCSLVAAYVQNHEDEKASV 246



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 82/197 (41%), Gaps = 8/197 (4%)

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           MY+K    + AR V      +NV +WTS+I G  +NG+ + AL  F  M+   V PN  T
Sbjct: 1   MYSKLDHPESARLVLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFT 60

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
           F  A  A     L   G++I  ++         +       D+  +    + A K   E+
Sbjct: 61  FPCAFKAVASLRLPVTGKQI-HALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEI 119

Query: 413 PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSV 472
           PE+ N + W A +S+         A  A  E  +++ +     + A  N   A   W   
Sbjct: 120 PER-NLETWNAFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLN---ACSDW--- 172

Query: 473 TELREKMKLRGVLKDTG 489
             L   M+L G++  +G
Sbjct: 173 LHLNLGMQLHGLVLRSG 189


>gi|15221400|ref|NP_172104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174948|sp|Q9LND4.1|PPR14_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06140, mitochondrial; Flags: Precursor
 gi|8810476|gb|AAF80137.1|AC024174_19 Contains similarity to a hypothetical protein F24K9.13 gi|6006885
           from Arabidopsis thaliana gb|AC008153 and contains
           multiple PPR PF|01535 repeats [Arabidopsis thaliana]
 gi|332189825|gb|AEE27946.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 558

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 156/439 (35%), Positives = 243/439 (55%), Gaps = 12/439 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+ IH    K G+  +  ++  L+ ++ + G ++ A ++FDE+P R    +  ++ GYLK
Sbjct: 128 GILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLK 187

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA-QILKCDV 182
             +  E   L   +  +G   D  T   ++KA      NV     +G+ VH   I +  +
Sbjct: 188 YSKDPEVFRLFCLMRDTGLALDALTLICLVKAC----GNV-FAGKVGKCVHGVSIRRSFI 242

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
              D L  +++D YVK      AR +F+  +++NV+  T++ISGF       +A ++FR+
Sbjct: 243 DQSDYLQASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQ 302

Query: 243 TVEKDIVVYNAMIEGYSIS---IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            + + I+     +    +S   + + R    VH  +I+N    D    ++ +DMYA+CG 
Sbjct: 303 MLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGN 362

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I  AR VFD M ++NV +W+SMI+ +G NG   +AL+ F  M+   V PN VTF+  LSA
Sbjct: 363 IQMARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSA 422

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H+G V +G + FESM RDY + P+ EHYACMVDLLGRAG + +A  F+  MP KP + 
Sbjct: 423 CSHSGNVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMAS 482

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
            W ALLS+CR+H +V++A   A ++  +   ++   YV LSN  A AG W+ V  +R KM
Sbjct: 483 AWGALLSACRIHKEVDLAGEIAEKLLSMEP-EKSSVYVLLSNIYADAGMWEMVNCVRRKM 541

Query: 480 KLRGVLKDTGCSWVGTESG 498
            ++G  K  G S   TE G
Sbjct: 542 GIKGYRKHVGQS--ATEVG 558



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 63/283 (22%), Positives = 130/283 (45%), Gaps = 42/283 (14%)

Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM--LEKNVICSTSMIS 225
           N  + VHA+++    + + VL ++L ++Y++  +  +A   F+ +   ++N     +++S
Sbjct: 21  NHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCWKRNRHSWNTILS 80

Query: 226 GFMSQGFVEDAEEIFRKTVEKDI-VVYNAM------IEGYS--------ISIETARKALE 270
           G+             +     D+ ++YN M      ++ ++        + +      + 
Sbjct: 81  GYSKS----------KTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGIL 130

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           +H   +KN   +D  +  +LV+MYA+ G ++ A++VFD +  +N   W  ++ GY K   
Sbjct: 131 IHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYSK 190

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGH--AGLVDK---GREIFESM--ERDYSMK 383
             +   LFC+M++  +  + +T +  + ACG+  AG V K   G  I  S   + DY   
Sbjct: 191 DPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQ- 249

Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
                 A ++D+  +   L+ A K + E     N  +W  L+S
Sbjct: 250 ------ASIIDMYVKCRLLDNARK-LFETSVDRNVVMWTTLIS 285



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/172 (25%), Positives = 86/172 (50%), Gaps = 16/172 (9%)

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM--QQKNVFTWTS 320
           +T     +VH ++I + F ++V LGS+L + Y +  ++D A   F+ +   ++N  +W +
Sbjct: 18  KTLNHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCWKRNRHSWNT 77

Query: 321 MIDGYGKNGNP--NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF----- 373
           ++ GY K+     +  L L+  M+  C   +    + A+ AC   GL++ G  I      
Sbjct: 78  ILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGILIHGLAMK 137

Query: 374 ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
             +++D  + P       +V++  + G++E A K   E+P + NS +W  L+
Sbjct: 138 NGLDKDDYVAPS------LVEMYAQLGTMESAQKVFDEIPVR-NSVLWGVLM 182



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 9/125 (7%)

Query: 33  LQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLK 92
           L N  +L+  L + S   +L+H         G  +H ++ + G++ +       + ++ +
Sbjct: 309 LPNQCTLAAILVSCSSLGSLRH---------GKSVHGYMIRNGIEMDAVNFTSFIDMYAR 359

Query: 93  CGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
           CG ++ A  +FD +P+R + +++ MI  +  NG  EE+L    K+ S    P+  TF  +
Sbjct: 360 CGNIQMARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSL 419

Query: 153 LKAST 157
           L A +
Sbjct: 420 LSACS 424


>gi|297744892|emb|CBI38389.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 169/472 (35%), Positives = 257/472 (54%), Gaps = 27/472 (5%)

Query: 37  DSLSNPLTATSLP-----SALQH--YINSDTPFYGLKIHAHITKTGVKPNTNISIKLLIL 89
           +S SNP +  SL      S LQ   +IN   P     IHA + + G   +  +  +LL  
Sbjct: 26  NSNSNPKSLKSLDQKQIISLLQRSRHINQVLP-----IHAQLIRNGHSQDPFMVFELLRS 80

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149
             KC A+ YA ++F       +  Y  +I G++ +G   E++ L  +++     PD Y  
Sbjct: 81  CSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYLEAIQLYSRMLHESILPDNYLM 140

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVF 209
           + ILKA   C S + L    GR VH++ LK    ++ ++   +++ Y K G+   AR VF
Sbjct: 141 ASILKA---CGSQLALRE--GREVHSRALKLGFSSNRLVRLRIMELYGKCGELGDARRVF 195

Query: 210 DMMLE----KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETA 265
           + M E    K+ +C T+MI GF+       A E FR  ++ + V  N       +S  + 
Sbjct: 196 EEMPEDVVAKDTVCWTAMIDGFVRNEETNRALEAFR-GMQGENVRPNEFTIVCVLSACSQ 254

Query: 266 RKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
             ALE    VH  + K     ++ +G+AL++MY++CG ID+A+ VFD M+ ++V T+ +M
Sbjct: 255 LGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTM 314

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           I G   NG   QA+ELF +M    ++P  VTF+G L+AC H GLVD G EIF SM RDY 
Sbjct: 315 ISGLSMNGKSRQAIELFRVMVGRRLRPTNVTFVGVLNACSHGGLVDFGFEIFHSMARDYR 374

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441
           ++P++EHY CMVDLLGR G LE+A   +  M   P+  +   LLS+C++H ++E+    A
Sbjct: 375 VEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVA 434

Query: 442 NEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            E+      D  G YV LS+  A++GKW    ++R KMK  G+ K+ GCS +
Sbjct: 435 KELEDRGQAD-SGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSI 485


>gi|357116509|ref|XP_003560023.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g25360-like [Brachypodium distachyon]
          Length = 804

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 151/449 (33%), Positives = 244/449 (54%), Gaps = 50/449 (11%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           +++ H++ G +  A   F+E+       +N MI+GY+++G   E+  L R++VS    PD
Sbjct: 236 IVVGHVRKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPD 295

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV------LYTALVDSYVKG 199
            +TF+ +L  S C  +   L    G+ VH Q ++  ++ D V      +  ALV  Y K 
Sbjct: 296 EFTFTSLL--SACANAGFFLH---GKSVHGQFIR--LQPDFVPEAALPVNNALVTLYSKS 348

Query: 200 GKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS 259
           GK + A  +FD M  K+V+   +++SG++  G +++A  IF++   K  + +  M+ GY 
Sbjct: 349 GKIAVATKIFDSMTLKDVVSWNTILSGYIESGCLDNAARIFKEMPYKSELSWMVMVSGY- 407

Query: 260 ISIETARKAL-----------------------------------EVHCQLIKNVFFEDV 284
           +    A  AL                                   ++H  L++  F    
Sbjct: 408 VHGGLAEDALKLFNQMRSEDVKPCDYTYAGAVAACGELGALKHGKQLHAHLVQCGFEASN 467

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
             G+AL+ MYA+CG + DAR VF  M   +  +W +MI   G++G+  +ALELF  M   
Sbjct: 468 SAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALGQHGHGREALELFDQMVAQ 527

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQ 404
            + P+ ++FL  L+AC HAGLVD G + FESMERD+ + P  +HYA ++DLLGRAG + +
Sbjct: 528 GIYPDRISFLTILTACNHAGLVDDGFQYFESMERDFGISPGEDHYARLIDLLGRAGRIGE 587

Query: 405 ALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464
           A   +  MP +P   +W A+LS CR++ D+E+   AA+++FK+   +  G Y+ LSNT +
Sbjct: 588 ARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAADQLFKM-VPEHDGTYILLSNTYS 646

Query: 465 AAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           AAG+W     +R+ M+ RGV K+ GCSW+
Sbjct: 647 AAGRWVDAARVRKLMRDRGVKKEPGCSWI 675



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/316 (23%), Positives = 128/316 (40%), Gaps = 66/316 (20%)

Query: 171 RMVHAQILKCDVKADDVLY---------TALVDSYVKGGKTSYARIVFDMM--LEKNVIC 219
           R++H   L  D+    VL+         T+LV +Y   G+   +   FD +    ++ + 
Sbjct: 65  RLLHLYTLSPDLATPAVLFRADPGPVAATSLVSAYAVAGRLRDSAAFFDSVPVARRDTVL 124

Query: 220 STSMISGFMSQGFVEDAEEIFRKTVEKD----------IVVYNAMIEGYSISIETARKAL 269
             +MIS F        A  +FR  +  D            + +A+ + + +++       
Sbjct: 125 HNAMISAFARASLAAPAVSVFRSLLASDDSLRPDDYSFTSLLSAVGQMHDLAVS---HCT 181

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKC---GKIDDARRVFDHMQQKNVFTWTS------ 320
           ++HC + K      + + +AL+ +Y KC   G   DAR+V D M +K+  TWT+      
Sbjct: 182 QLHCAVHKLGAGAVLSVSNALIALYMKCDAPGVTRDARKVLDEMPEKDELTWTTIVVGHV 241

Query: 321 -------------------------MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
                                    MI GY ++G   +A ELF  M    + P+  TF  
Sbjct: 242 RKGDVHAARSAFEEIDGEFDVVWNAMISGYVQSGMCAEAFELFRRMVSKRIPPDEFTFTS 301

Query: 356 ALSACGHAGLVDKGREI---FESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
            LSAC +AG    G+ +   F  ++ D+  +  +     +V L  ++G +  A K    M
Sbjct: 302 LLSACANAGFFLHGKSVHGQFIRLQPDFVPEAALPVNNALVTLYSKSGKIAVATKIFDSM 361

Query: 413 PEKPNSDV--WAALLS 426
             K   DV  W  +LS
Sbjct: 362 TLK---DVVSWNTILS 374



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/190 (24%), Positives = 91/190 (47%), Gaps = 9/190 (4%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G ++HAH+ + G + + +    LL ++ +CGA+K A  +F  +P     ++N MI+   
Sbjct: 450 HGKQLHAHLVQCGFEASNSAGNALLTMYARCGAVKDARLVFLVMPNVDSVSWNAMISALG 509

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           ++G   E+L L  ++V+ G  PD  +F  IL   T C ++  L  +  +   +      +
Sbjct: 510 QHGHGREALELFDQMVAQGIYPDRISFLTIL---TAC-NHAGLVDDGFQYFESMERDFGI 565

Query: 183 KADDVLYTALVDSYVKGGKTSYAR-IVFDMMLEKNVICSTSMISGFMSQGFVE----DAE 237
              +  Y  L+D   + G+   AR ++  M  E       +++SG    G +E     A+
Sbjct: 566 SPGEDHYARLIDLLGRAGRIGEARDLIKTMPFEPTPAIWEAILSGCRINGDMELGAYAAD 625

Query: 238 EIFRKTVEKD 247
           ++F+   E D
Sbjct: 626 QLFKMVPEHD 635


>gi|225439791|ref|XP_002273763.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 498

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 160/441 (36%), Positives = 253/441 (57%), Gaps = 19/441 (4%)

Query: 61  PFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120
           P  G ++HA   KTG    T     L+ ++ K G L  + ++F+E+  + +  +N M++ 
Sbjct: 56  PICGKQVHALAIKTGSDTPTVTKTALMDMYSKYGQLGSSVRVFEEVGFKDVVTWNTMLSS 115

Query: 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
           ++++G+ EE+L++ R++   G     +T   +LKA T  ++        G+ VHA ++  
Sbjct: 116 FVRHGRPEEALAVFREMQKEGVWLSEFTLCSLLKACTLLKA-----FQQGKQVHALVV-- 168

Query: 181 DVKADD--VLYTALVDSYVKGGKTSYARIVF-DMMLEKNVICSTSMISGFMSQGFVEDAE 237
            V   D  VL TAL+D Y        A  +F ++  +K+ +   S+ISG +     ++A 
Sbjct: 169 -VMGRDLVVLGTALIDFYTNVECIGEAMEIFHNLNWKKDDVMRNSLISGCVRNRRYKEAF 227

Query: 238 EIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
            I        + V +A+      S     K  ++HC  ++  F  D +L + L+DMYAKC
Sbjct: 228 LIMSAMRPNVVAVTSALAACSKNSDLWVGK--QIHCVAMRFGFTFDTQLCNVLLDMYAKC 285

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM--QECCVQPNYVTFLG 355
           GKI +AR +FD M +K+V +WTSMID YG +G+  +AL+LF  M  +   + PN VTFL 
Sbjct: 286 GKILNARSLFDRMDKKDVVSWTSMIDAYGNHGHGLEALKLFKKMEGEGNSILPNLVTFLA 345

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE- 414
            LSAC H+G+V++G+E F  +++ YS+ P  EHYAC +D+LGRAG +E+  +    M + 
Sbjct: 346 VLSACAHSGMVEQGQECFNLIQKKYSLDPGPEHYACFIDILGRAGQIEEVWRLFNNMIKN 405

Query: 415 --KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSV 472
             KP + VWAA+L++C  + DV     AA  + +L  N +PG YV LSN  AA G+WDSV
Sbjct: 406 QTKPTAAVWAAILNACSHNLDVSRGEFAAKNLLELEPN-KPGNYVLLSNFYAAVGRWDSV 464

Query: 473 TELREKMKLRGVLKDTGCSWV 493
            ELR  M+ +G++K+TG SWV
Sbjct: 465 NELRSIMRKKGLVKETGNSWV 485



 Score =  102 bits (254), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 107/437 (24%), Positives = 186/437 (42%), Gaps = 70/437 (16%)

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           FDE+P R L   N +IA ++++G    +LS+ R++  +G   + YT + +L         
Sbjct: 1   FDEMPHRDLYTLNSLIASHVRSGNAVAALSVFRRIHRAGSHLNSYTLTPVLAV------- 53

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
             L    G+ VHA  +K       V  TAL+D Y K G+   +  VF+ +  K+V+   +
Sbjct: 54  --LDPICGKQVHALAIKTGSDTPTVTKTALMDMYSKYGQLGSSVRVFEEVGFKDVVTWNT 111

Query: 223 MISGFMSQGFVEDAEEIFRKTVEKDIVVYN----AMIEGYSISIETARKALEVHCQLIKN 278
           M+S F+  G  E+A  +FR+  ++ + +      ++++  ++ ++  ++  +VH  ++  
Sbjct: 112 MLSSFVRHGRPEEALAVFREMQKEGVWLSEFTLCSLLKACTL-LKAFQQGKQVHALVV-- 168

Query: 279 VFFED-VKLGSALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQALE 336
           V   D V LG+AL+D Y     I +A  +F ++  +K+     S+I G  +N    +A  
Sbjct: 169 VMGRDLVVLGTALIDFYTNVECIGEAMEIFHNLNWKKDDVMRNSLISGCVRNRRYKEAFL 228

Query: 337 LFCMMQECCVQPNYVTFLGALSAC-----------------------------------G 361
           +   M     +PN V    AL+AC                                    
Sbjct: 229 IMSAM-----RPNVVAVTSALAACSKNSDLWVGKQIHCVAMRFGFTFDTQLCNVLLDMYA 283

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK-----P 416
             G +   R +F+ M+     K  +  +  M+D  G  G   +ALK   +M  +     P
Sbjct: 284 KCGKILNARSLFDRMD-----KKDVVSWTSMIDAYGNHGHGLEALKLFKKMEGEGNSILP 338

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND-RPGAYVALSNTLAAAGKWDSVTEL 475
           N   + A+LS+C     VE      N I K  + D  P  Y    + L  AG+ + V  L
Sbjct: 339 NLVTFLAVLSACAHSGMVEQGQECFNLIQKKYSLDPGPEHYACFIDILGRAGQIEEVWRL 398

Query: 476 REKMKLRGVLKDTGCSW 492
              M ++   K T   W
Sbjct: 399 FNNM-IKNQTKPTAAVW 414



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 3/101 (2%)

Query: 57  NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNY 116
           NSD  + G +IH    + G   +T +   LL ++ KCG +  A  +FD + ++ + ++  
Sbjct: 250 NSDL-WVGKQIHCVAMRFGFTFDTQLCNVLLDMYAKCGKILNARSLFDRMDKKDVVSWTS 308

Query: 117 MIAGYLKNGQVEESLSLVRKLVSSGER--PDGYTFSMILKA 155
           MI  Y  +G   E+L L +K+   G    P+  TF  +L A
Sbjct: 309 MIDAYGNHGHGLEALKLFKKMEGEGNSILPNLVTFLAVLSA 349


>gi|356528966|ref|XP_003533068.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15930-like [Glycine max]
          Length = 712

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 158/479 (32%), Positives = 252/479 (52%), Gaps = 40/479 (8%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           + P  L+ +  +    YG  +  H  K G   N  +    + +   C  +  A ++FD  
Sbjct: 109 TFPFLLKGFTRNMALQYGKVLLNHAVKHGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMG 168

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
               +  +N M++GY +  Q ++S  L  ++   G  P+  T  ++L A +  +      
Sbjct: 169 DAWEVVTWNIMLSGYNRVKQFKKSKMLFIEMEKRGVSPNSVTLVLMLSACSKLKD----- 223

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
              G+ ++  I    V+ + +L   L+D +   G+   A+ VFD M  ++VI  TS+++G
Sbjct: 224 LEGGKHIYKYINGGIVERNLILENVLIDMFAACGEMDEAQSVFDNMKNRDVISWTSIVTG 283

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY---------------------------S 259
           F + G ++ A + F +  E+D V + AMI+GY                            
Sbjct: 284 FANIGQIDLARKYFDQIPERDYVSWTAMIDGYLRMNRFIEALALFREMQMSNVKPDEFTM 343

Query: 260 ISIETA---RKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ 312
           +SI TA     ALE    V   + KN    D  +G+AL+DMY KCG +  A++VF  M  
Sbjct: 344 VSILTACAHLGALELGEWVKTYIDKNSIKNDTFVGNALIDMYFKCGNVGKAKKVFKEMHH 403

Query: 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           K+ FTWT+MI G   NG+  +AL +F  M E  + P+ +T++G L AC HAG+V+KG+  
Sbjct: 404 KDKFTWTAMIVGLAINGHGEEALAMFSNMIEASITPDEITYIGVLCACTHAGMVEKGQSF 463

Query: 373 FESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHD 432
           F SM   + +KP + HY CMVDLLGRAG LE+A + ++ MP KPNS VW +LL +CR+H 
Sbjct: 464 FISMTMQHGIKPNVTHYGCMVDLLGRAGRLEEAHEVIVNMPVKPNSIVWGSLLGACRVHK 523

Query: 433 DVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
           +V++A +AA +I +L   +    YV L N  AA  +W+++ ++R+ M  RG+ K  GCS
Sbjct: 524 NVQLAEMAAKQILELEP-ENGAVYVLLCNIYAACKRWENLRQVRKLMMERGIKKTPGCS 581



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/401 (26%), Positives = 189/401 (47%), Gaps = 46/401 (11%)

Query: 63  YGLK-IHAHITKTGVKPNTNISIKLLIL--HLKCGALKYAGQMFDELPQRTLSAYNYMIA 119
           Y LK IH+H  K G+  +     +++      + G + YA Q+FD +PQ TL  +N MI 
Sbjct: 21  YQLKQIHSHTIKMGLSSDPLFQKRVIAFCCAHESGKMIYARQVFDAIPQPTLFIWNTMIK 80

Query: 120 GYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           GY +    +  +S+   +++S  +PD +TF  +LK  T    N+ L    G+++    +K
Sbjct: 81  GYSRINHPQNGVSMYLLMLASNIKPDRFTFPFLLKGFT---RNMAL--QYGKVLLNHAVK 135

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
               ++  +  A +  +        AR VFDM     V+    M+SG+      + ++ +
Sbjct: 136 HGFDSNLFVQKAFIHMFSLCRLVDLARKVFDMGDAWEVVTWNIMLSGYNRVKQFKKSKML 195

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIK----NVFFEDVKLGSALVDMYA 295
           F + +EK  V  N++     +S  +  K LE    + K     +   ++ L + L+DM+A
Sbjct: 196 FIE-MEKRGVSPNSVTLVLMLSACSKLKDLEGGKHIYKYINGGIVERNLILENVLIDMFA 254

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTS-------------------------------MIDG 324
            CG++D+A+ VFD+M+ ++V +WTS                               MIDG
Sbjct: 255 ACGEMDEAQSVFDNMKNRDVISWTSIVTGFANIGQIDLARKYFDQIPERDYVSWTAMIDG 314

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP 384
           Y +     +AL LF  MQ   V+P+  T +  L+AC H G ++ G  +   ++++ S+K 
Sbjct: 315 YLRMNRFIEALALFREMQMSNVKPDEFTMVSILTACAHLGALELGEWVKTYIDKN-SIKN 373

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
                  ++D+  + G++ +A K   EM  K +   W A++
Sbjct: 374 DTFVGNALIDMYFKCGNVGKAKKVFKEMHHK-DKFTWTAMI 413


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 146/438 (33%), Positives = 246/438 (56%), Gaps = 11/438 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           GL++H    K+G   +  +   +L L+ KC AL  A  +F E+ QR   ++N +IA   +
Sbjct: 357 GLQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQ 416

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N   E++++ + +++  G  PD +T+  +LKA    +S        G +VH + +K  + 
Sbjct: 417 NECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQS-----LEYGSVVHGKAIKSGLG 471

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  + + +VD Y K G  + A+ + D +  + ++   S+ISGF      E+A++ F + 
Sbjct: 472 LDAFVSSTVVDMYCKCGMITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEM 531

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               V+ D   Y  +++  + ++ T     ++H Q+IK     D  + S LVDMYAKCG 
Sbjct: 532 LDIGVKPDHFTYATVLDTCA-NLATIELGKQIHGQIIKQEMLGDEYISSTLVDMYAKCGN 590

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           + D+  +F+  Q+ +  +W +MI GY  +G   +ALE+F  MQ+  V PN+ TF+  L A
Sbjct: 591 MPDSLLMFEKAQKLDFVSWNAMICGYALHGQGFEALEMFERMQQANVVPNHATFVAVLRA 650

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H GL+D G   F  M   Y ++P++EH+ACMVD+LGR+   ++ALKF+  MP + ++ 
Sbjct: 651 CSHVGLLDDGCRYFYLMTSRYKLEPQLEHFACMVDILGRSKGPQEALKFIRSMPLEADAV 710

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +W  LLS C++  DVE+A  AA+ + +L+ +D    Y+ LSN  A +GKW  V+  R  M
Sbjct: 711 IWKTLLSICKIRQDVEVAETAASNVLRLDPDD-SSVYILLSNVYAESGKWVDVSRTRRLM 769

Query: 480 KLRGVLKDTGCSWVGTES 497
           +   + K+ GCSW+  +S
Sbjct: 770 RQGRLKKEPGCSWIEVQS 787



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 108/421 (25%), Positives = 181/421 (42%), Gaps = 49/421 (11%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQR-------TLSAY-- 114
           G   HA +  +G  P T +S  LL ++ +CG   +A  +FD +P R        L+AY  
Sbjct: 23  GQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARGVFDVMPHRDTVSWNTMLTAYAH 82

Query: 115 ----------------------NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
                                 N +++GY + G   +S+ L  ++   G  PD  T +++
Sbjct: 83  AGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSVEMARRGVAPDRTTLAVL 142

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           LKA   C     L   LG  +HA  +K  ++ D    +ALVD Y K      A   F  M
Sbjct: 143 LKA---CGGLEDLA--LGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGM 197

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN---AMIEGYSISIETARKAL 269
            E+N +   + I+G +         E+F +     + V     A +     +I     A 
Sbjct: 198 GERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLSTAR 257

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
           ++H   IKN F  D  +G+A+VD+YAK   + DARR F  +    V    +M+ G  + G
Sbjct: 258 QLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTG 317

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
              +AL+LF  M    +  + V+  G  SAC       +G ++        ++K   +  
Sbjct: 318 LGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQV-----HCLAIKSGFDVD 372

Query: 390 AC----MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIF 445
            C    ++DL G+  +L +A     EM E+ +S  W A++++   ++  E      NE+ 
Sbjct: 373 VCVRNAILDLYGKCKALVEAYLVFQEM-EQRDSVSWNAIIAALEQNECYEDTIAYLNEML 431

Query: 446 K 446
           +
Sbjct: 432 R 432



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 100/422 (23%), Positives = 179/422 (42%), Gaps = 47/422 (11%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IHA   KTG++ +      L+ ++ KC +L+ A + F  + +R   ++   IAG ++
Sbjct: 155 GVQIHAVAVKTGLEMDVRAGSALVDMYGKCRSLEDALRFFHGMGERNSVSWGAAIAGCVQ 214

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILK--ASTCCRSNVPLPRNLGRMVHAQILKCD 181
           N Q    L L  ++   G       ++ + +  A+  C S         R +HA  +K  
Sbjct: 215 NEQYTRGLELFVQMQRLGLGVSQPAYASVFRSCAAITCLST-------ARQLHAHAIKNK 267

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF- 240
             AD V+ TA+VD Y K      AR  F  +    V    +M+ G +  G   +A ++F 
Sbjct: 268 FSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQACNAMMVGLVRTGLGAEALQLFQ 327

Query: 241 ---RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
              R  +  D+V  + +    +  ++   + L+VHC  IK+ F  DV + +A++D+Y KC
Sbjct: 328 FMTRSGIGFDVVSLSGVFSACA-EVKGYLQGLQVHCLAIKSGFDVDVCVRNAILDLYGKC 386

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
             + +A  VF  M+Q++  +W ++I    +N      +     M    ++P+  T+   L
Sbjct: 387 KALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAYLNEMLRYGMEPDDFTYGSVL 446

Query: 358 SACG-----HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL---------- 402
            AC        G V  G+ I   +  D  +   +    C   ++  A  L          
Sbjct: 447 KACAGLQSLEYGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGGQELV 506

Query: 403 ---------------EQALKFVLEMPE---KPNSDVWAALLSSCRLHDDVEMANIAANEI 444
                          E+A KF  EM +   KP+   +A +L +C     +E+      +I
Sbjct: 507 SWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFTYATVLDTCANLATIELGKQIHGQI 566

Query: 445 FK 446
            K
Sbjct: 567 IK 568



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/187 (26%), Positives = 102/187 (54%), Gaps = 5/187 (2%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           YG  +H    K+G+  +  +S  ++ ++ KCG +  A ++ D +  + L ++N +I+G+ 
Sbjct: 457 YGSVVHGKAIKSGLGLDAFVSSTVVDMYCKCGMITEAQKLHDRIGGQELVSWNSIISGFS 516

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            N Q EE+     +++  G +PD +T++ +L   TC  +N+     LG+ +H QI+K ++
Sbjct: 517 LNKQSEEAQKFFSEMLDIGVKPDHFTYATVL--DTC--ANLATI-ELGKQIHGQIIKQEM 571

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             D+ + + LVD Y K G    + ++F+   + + +   +MI G+   G   +A E+F +
Sbjct: 572 LGDEYISSTLVDMYAKCGNMPDSLLMFEKAQKLDFVSWNAMICGYALHGQGFEALEMFER 631

Query: 243 TVEKDIV 249
             + ++V
Sbjct: 632 MQQANVV 638


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 140/437 (32%), Positives = 254/437 (58%), Gaps = 20/437 (4%)

Query: 66   KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
            ++H +  K     N  ++   +  + KCG+L YA ++F  +  +T++++N +I G+ ++ 
Sbjct: 771  ELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSN 830

Query: 126  QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
                SL    ++  SG  PD +T   +L A +  +S       LG+ VH  I++  ++ D
Sbjct: 831  DPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKS-----LRLGKEVHGFIIRNWLERD 885

Query: 186  DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
              +Y +++  Y+  G+    + +FD M +K+++   ++I+G++  GF + A  +FR+   
Sbjct: 886  LFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQ--- 942

Query: 246  KDIVVYNAMIEGYSIS--------IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
              +V+Y   + G S+         + + R   E H   +K++  +D  +  +L+DMYAK 
Sbjct: 943  --MVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKN 1000

Query: 298  GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
            G I  + +VF+ +++K+  +W +MI GYG +G   +A++LF  MQ     P+ +TFLG L
Sbjct: 1001 GSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVL 1060

Query: 358  SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL-EMPEKP 416
            +AC H+GL+ +G    + M+  + +KP ++HYAC++D+LGRAG L++AL+ V  EM E+ 
Sbjct: 1061 TACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEA 1120

Query: 417  NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
            +  +W +LLSSCR+H ++EM    A ++F+L   ++P  YV LSN  A  GKW+ V ++R
Sbjct: 1121 DVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEP-EKPENYVLLSNLYAGLGKWEDVRKVR 1179

Query: 477  EKMKLRGVLKDTGCSWV 493
            ++M    + KD GCSW+
Sbjct: 1180 QRMNEMSLRKDAGCSWI 1196



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 158/320 (49%), Gaps = 16/320 (5%)

Query: 64  GLKIHAHIT-KTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G KIH  ++  T ++ +  +  +++ ++  CG+   +  +FD L  + L  +N +I+ Y 
Sbjct: 458 GRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYS 517

Query: 123 KNGQVEESLSLVRKLVSSGER-PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           +N   +E L    +++S+ +  PD +T+  ++KA     S+V     +G  VH  ++K  
Sbjct: 518 RNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAGM-SDV----GIGLAVHGLVVKTG 572

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +  D  +  ALV  Y   G  + A  +FD+M E+N++   SMI  F   GF E++  +  
Sbjct: 573 LVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLG 632

Query: 242 KTVEK--DIVVYNAMIEGYSISIETARK-----ALEVHCQLIKNVFFEDVKLGSALVDMY 294
           + +E+  D      +    ++    AR+        VH   +K    +++ L +AL+DMY
Sbjct: 633 EMMEENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMY 692

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC--VQPNYVT 352
           +KCG I +A+ +F     KNV +W +M+ G+   G+ +   ++   M      V+ + VT
Sbjct: 693 SKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVT 752

Query: 353 FLGALSACGHAGLVDKGREI 372
            L A+  C H   +   +E+
Sbjct: 753 ILNAVPVCFHESFLPSLKEL 772



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 136/269 (50%), Gaps = 19/269 (7%)

Query: 64   GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
            G ++H  I +  ++ +  + + +L L++ CG L     +FD +  ++L ++N +I GYL+
Sbjct: 870  GKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQ 929

Query: 124  NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            NG  + +L + R++V  G +  G   SM+     C  S +P  R LGR  HA  LK  ++
Sbjct: 930  NGFPDRALGVFRQMVLYGIQLCG--ISMMPVFGAC--SLLPSLR-LGREAHAYALKHLLE 984

Query: 184  ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEI 239
             D  +  +L+D Y K G  + +  VF+ + EK+     +MI G+   G  ++A    EE+
Sbjct: 985  DDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEM 1044

Query: 240  FRKTVEKDIVVYNAMIEG--YSISIETARKALEVHCQLIKNVFF--EDVKLGSALVDMYA 295
             R     D + +  ++    +S  I    + L+     +K+ F    ++K  + ++DM  
Sbjct: 1045 QRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLD----QMKSSFGLKPNLKHYACVIDMLG 1100

Query: 296  KCGKIDDARRVF--DHMQQKNVFTWTSMI 322
            + G++D A RV   +  ++ +V  W S++
Sbjct: 1101 RAGQLDKALRVVAEEMSEEADVGIWKSLL 1129



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 154/363 (42%), Gaps = 42/363 (11%)

Query: 118 IAGYLKNGQVEESLSLVRKLVSSGERP-DGY-----TFSMILKASTCCRSNVPLPRNLGR 171
           I+ + + G +++S   V++ V   E   D +        ++L+AS   R ++ + R + +
Sbjct: 405 ISNFCETGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGK-RKDIEMGRKIHQ 463

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
           +V        ++ DDVL T ++  Y   G    +R VFD +  KN+    ++IS +    
Sbjct: 464 LVSGST---RLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNE 520

Query: 232 FVEDAEEIFRKTVEK-----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
             ++  E F + +       D   Y  +I+  +  +      L VH  ++K    EDV +
Sbjct: 521 LYDEVLETFIEMISTTDLLPDHFTYPCVIKACA-GMSDVGIGLAVHGLVVKTGLVEDVFV 579

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE--- 343
           G+ALV  Y   G + DA ++FD M ++N+ +W SMI  +  NG   ++  L   M E   
Sbjct: 580 GNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENG 639

Query: 344 -CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA----CMVDLLGR 398
                P+  T +  L  C     +  G+ +       +++K +++        ++D+  +
Sbjct: 640 DGAFMPDVATLVTVLPVCAREREIGLGKGV-----HGWAVKLRLDKELVLNNALMDMYSK 694

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA------------NIAANEIFK 446
            G +  A + + +M    N   W  ++       D                ++ A+E+  
Sbjct: 695 CGCITNA-QMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTI 753

Query: 447 LNA 449
           LNA
Sbjct: 754 LNA 756



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 95/186 (51%), Gaps = 10/186 (5%)

Query: 64   GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
            G + HA+  K  ++ +  I+  L+ ++ K G++  + ++F+ L +++ +++N MI GY  
Sbjct: 971  GREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGI 1030

Query: 124  NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP--RNLGRMVHAQILKCD 181
            +G  +E++ L  ++  +G  PD  TF  +L A  C  S +     R L +M  +  LK +
Sbjct: 1031 HGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTA--CNHSGLIHEGLRYLDQMKSSFGLKPN 1088

Query: 182  VKADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEK-NVICSTSMISGFMSQGFVEDAEEI 239
            +K     Y  ++D   + G+   A R+V + M E+ +V    S++S       +E  E++
Sbjct: 1089 LKH----YACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKV 1144

Query: 240  FRKTVE 245
              K  E
Sbjct: 1145 AAKLFE 1150


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 154/434 (35%), Positives = 247/434 (56%), Gaps = 16/434 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH    K G   N  +   L+ ++ K G + YA  +FD+L  RT+ ++  +I+GY++
Sbjct: 104 GKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQ 163

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG   E+L++ +++     +PD      ++ A T    NV      G+ +H  + K  ++
Sbjct: 164 NGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYT----NVE-DLGQGKSIHGLVTKLGLE 218

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +  +  +L   Y K G    AR  F+ M + N+I   +MISG+ + G+ E+A ++FR+ 
Sbjct: 219 FEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREM 278

Query: 244 VEKDIVVYNAMIEGYSI------SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           + K+I V +  +    +      S+E AR    +   + K+ + +D  + + L+DMYAKC
Sbjct: 279 ITKNIRVDSITMRSAVLASAQVGSLELAR---WLDGYISKSEYRDDTFVNTGLIDMYAKC 335

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G I  AR VFD +  K+V  W+ MI GYG +G+  +A+ L+  M++  V PN  TF+G L
Sbjct: 336 GSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLL 395

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           +AC ++GLV +G E+F  M  D+ ++P  +HY+C+VDLLGRAG L QA  F++ MP KP 
Sbjct: 396 TACKNSGLVKEGWELFHLMP-DHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPG 454

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
             VW ALLS+C++H  V +  IAA ++F L+  +  G YV LSN  A+A  W  V  +R 
Sbjct: 455 VSVWGALLSACKIHRKVRLGEIAAEQLFILDPYN-TGHYVQLSNLYASAHLWTRVANVRL 513

Query: 478 KMKLRGVLKDTGCS 491
            M  +G+ KD G S
Sbjct: 514 MMTQKGLNKDLGHS 527



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 200/427 (46%), Gaps = 20/427 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +++  +  +G+     + IK +   L  G + YA + F E+ +  +  +N +I GY +  
Sbjct: 5   QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKN 64

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
            V+  + +   +  S   P+ +TF  +LKA  C  ++V     +G+ +H Q  K    ++
Sbjct: 65  IVDAPIRMYMDMQISQVHPNCFTFLYVLKA--CGGTSV---EGIGKQIHGQTFKYGFGSN 119

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK--- 242
             +  +LV  Y K G+ SYARIVFD + ++ V+  TS+ISG++  G   +A  +F++   
Sbjct: 120 VFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQ 179

Query: 243 -TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
             V+ D +   +++  Y+ ++E   +   +H  + K     +  +  +L  MYAK G ++
Sbjct: 180 CNVKPDWIALVSVMTAYT-NVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVE 238

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            AR  F+ M++ N+  W +MI GY  NG   +A++LF  M    ++ + +T   A+ A  
Sbjct: 239 VARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASA 298

Query: 362 HAGLVDKGR----EIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
             G ++  R     I +S  RD +          ++D+  + GS+  A + V +     +
Sbjct: 299 QVGSLELARWLDGYISKSEYRDDTFVN-----TGLIDMYAKCGSIYLA-RCVFDRVADKD 352

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
             +W+ ++    LH   + A    NE+ +       G ++ L      +G      EL  
Sbjct: 353 VVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFH 412

Query: 478 KMKLRGV 484
            M   G+
Sbjct: 413 LMPDHGI 419



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 150/366 (40%), Gaps = 58/366 (15%)

Query: 11  VFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTA----------------TSLPSALQH 54
           VF   H+R  T+V         +QN D    P+ A                 +L S +  
Sbjct: 142 VFDKLHDR--TVVSWTSIISGYVQNGD----PMEALNVFKEMRQCNVKPDWIALVSVMTA 195

Query: 55  YINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAY 114
           Y N +    G  IH  +TK G++   +I I L  ++ K G ++ A   F+ + +  L  +
Sbjct: 196 YTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILW 255

Query: 115 NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH 174
           N MI+GY  NG  EE++ L R++++   R D  T    + AS    S       L R + 
Sbjct: 256 NAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGS-----LELARWLD 310

Query: 175 AQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVE 234
             I K + + D  + T L+D Y K G    AR VFD + +K+V+  + MI G+   G  +
Sbjct: 311 GYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQ 370

Query: 235 DAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
           +A           I +YN M +      +     L   C   KN     VK G  L  + 
Sbjct: 371 EA-----------ICLYNEMKQAGVCPNDGTFIGLLTAC---KNSGL--VKEGWELFHLM 414

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
                        DH  + +   ++ ++D  G+ G  NQA +    M    ++P    + 
Sbjct: 415 P------------DHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMP---IKPGVSVWG 459

Query: 355 GALSAC 360
             LSAC
Sbjct: 460 ALLSAC 465


>gi|449457225|ref|XP_004146349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like [Cucumis sativus]
          Length = 781

 Score =  265 bits (677), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 156/469 (33%), Positives = 265/469 (56%), Gaps = 47/469 (10%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G K+   I KTG+  +  +   L+ ++ +   ++ A ++FDE+  R   ++N MI+GY++
Sbjct: 262 GEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVR 321

Query: 124 NGQVEESLSLVRKLVSSG-ERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
             + E++++  R++   G E+PD  T    L A T  ++       LG  +H  + K ++
Sbjct: 322 CRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKN-----LELGDEIHNYVRK-EL 375

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
                +  AL+D Y K G  + AR +FD M  KNVIC TSMISG+++ G + +A ++F K
Sbjct: 376 GFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDK 435

Query: 243 TVEKDIVVYNAMIEGY--------------SISIETARK----------------ALE-- 270
           +  +D+V++ AMI GY               + I+  +                 ALE  
Sbjct: 436 SPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQG 495

Query: 271 --VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
             +H  L +N    DV +G+AL++MY+KCG +D +  +F  ++ K+  +WTS+I G   N
Sbjct: 496 KWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMN 555

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G  ++AL LF  M+    +P+ +TF+G LSAC H GLV++GR  F SM++ + ++PK+EH
Sbjct: 556 GKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEH 615

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDV----WAALLSSCRLHDDVEMANIAANEI 444
           Y C++DLLGRAG L++A + + E+P + N ++    + ALLS+CR+H++V+M    A ++
Sbjct: 616 YGCVIDLLGRAGLLDEAEELIQEIPIE-NCEIVVPLYGALLSACRIHNNVDMGERLAKKL 674

Query: 445 FKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             + + D    +  L+N  A+  +W+   ++R KMK  GV K  GCS +
Sbjct: 675 ENIESCD-SSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLI 722



 Score =  139 bits (349), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 188/397 (47%), Gaps = 45/397 (11%)

Query: 66  KIHAHITKTGVKPNTNISIKLLIL--HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           +I + I + G++ + +   KL+        G L+YA ++F+ +   +L  YN M+  Y K
Sbjct: 161 QIQSQIFRIGLEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKMYAK 220

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G + + L L ++L   G  PDG+T+  +LKA  C R         G  V   I+K  + 
Sbjct: 221 RGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIGCLRD-----VRQGEKVRGFIVKTGMD 275

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D+ +Y +L+D Y +      A+ +FD M  ++ +    MISG++     EDA   FR+ 
Sbjct: 276 LDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREM 335

Query: 244 VEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            ++     +      ++S  TA K L    E+H  + K + F   ++ +AL+DMYAKCG 
Sbjct: 336 QQEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFT-TRIDNALLDMYAKCGC 394

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM------------------- 340
           ++ AR +FD M  KNV  WTSMI GY   G+  +A +LF                     
Sbjct: 395 LNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQF 454

Query: 341 ------------MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
                       MQ   V+P+  T +  L+ C   G +++G+ I   ++ +      +  
Sbjct: 455 HHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVG 514

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
            A ++++  + G ++++L+   E+ +K  +  W +++
Sbjct: 515 TA-LIEMYSKCGCVDKSLEIFYELEDKDTAS-WTSII 549



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 71/341 (20%), Positives = 148/341 (43%), Gaps = 27/341 (7%)

Query: 171 RMVHAQILKCDVKAD----DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
           + + +QI +  ++ D    + L     DS +  G   YA  +F+ + + ++     M+  
Sbjct: 160 KQIQSQIFRIGLEGDRDTINKLMAFCADSSL--GNLRYAEKIFNYVQDPSLFVYNVMVKM 217

Query: 227 FMSQGFVEDAEEIFRKTVEK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
           +  +G +     +F++  E     D   Y  +++     +   R+  +V   ++K     
Sbjct: 218 YAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIG-CLRDVRQGEKVRGFIVKTGMDL 276

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC-MM 341
           D  + ++L+DMY +   +++A+++FD M  ++  +W  MI GY +      A+  F  M 
Sbjct: 277 DNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQ 336

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGS 401
           QE   +P+  T +  LSAC     ++ G EI   + ++     ++++   ++D+  + G 
Sbjct: 337 QEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDN--ALLDMYAKCGC 394

Query: 402 LEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSN 461
           L  A     EM  K N   W +++S      D+      A ++F  +       + A+ N
Sbjct: 395 LNIARNIFDEMSMK-NVICWTSMISGYINCGDLR----EARDLFDKSPVRDVVLWTAMIN 449

Query: 462 TLAAAGKWDSVTELREKMKLRGVLKD--------TGCSWVG 494
                  +D    L  +M+++ V  D        TGC+ +G
Sbjct: 450 GYVQFHHFDDAVALFREMQIQRVKPDKFTVVTLLTGCAQLG 490


>gi|188509964|gb|ACD56648.1| putative pentatricopeptide repeat protein [Gossypioides kirkii]
          Length = 805

 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 148/447 (33%), Positives = 251/447 (56%), Gaps = 24/447 (5%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           ++ S L    NS T   G  +H+   K+  +   N S  LL ++ KCG L  A ++F+++
Sbjct: 253 TIISVLVGCANSGTLSLGKAVHSLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKM 312

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
            +R + ++  MIAGY ++G+ + ++ L++++   G + D    + IL A  C RS     
Sbjct: 313 GERNVVSWTSMIAGYTRDGRSDGAIRLLQQMEKEGVKLDVVATTSILHA--CARSG---S 367

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
            + G+ VH  I   +++++  +  AL+D Y K G    A  VF  M+ K++I   +MI  
Sbjct: 368 LDNGKDVHDYIKANNMESNLFVCNALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGE 427

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
                   D+  +             A I     S+    +  E+H  +++N +  D  +
Sbjct: 428 LKP-----DSRTM-------------ACILPACASLSALERGKEIHGYILRNGYSSDRHV 469

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
            +ALVD+Y KCG +  AR +FD +  K++ +WT MI GYG +G  N+A+  F  M++  +
Sbjct: 470 ANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMISGYGMHGYGNEAIATFNEMRDAGI 529

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
           +P+ V+F+  L AC H+GL+++G   F  M+ D++++PK+EHYACMVDLL R G+L +A 
Sbjct: 530 EPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAY 589

Query: 407 KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
           +F+  +P  P++ +W ALL  CR++ D+E+A   A  +F+L   +  G YV L+N  A A
Sbjct: 590 EFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEP-ENTGYYVLLANIYAEA 648

Query: 467 GKWDSVTELREKMKLRGVLKDTGCSWV 493
            KW+ V  +REK+  +G+ K+ GCSW+
Sbjct: 649 EKWEEVKRMREKIGKKGLRKNPGCSWI 675



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 108/445 (24%), Positives = 192/445 (43%), Gaps = 86/445 (19%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L   +  S LQ    S +   G K+H+ I    V  +  + +KL+ L+  CG LK   ++
Sbjct: 97  LETKTYSSVLQLCAGSKSLTDGKKVHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRV 156

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVS---SGERPD-------------- 145
           FD + ++ +  +N+M++ Y K G  +ES+ L + +V     G+RP+              
Sbjct: 157 FDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDV 216

Query: 146 --------GYT-----------------------FSMILKASTCCRSNVPLPRNLGRMVH 174
                   GY                         + I+     C ++  L  +LG+ VH
Sbjct: 217 ISWNSMISGYVSNGLTERGLEIYKQMMYLGIDVDLATIISVLVGCANSGTL--SLGKAVH 274

Query: 175 AQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM----SQ 230
           +  +K   +        L+D Y K G    A  VF+ M E+NV+  TSMI+G+     S 
Sbjct: 275 SLAIKSTFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSD 334

Query: 231 GFVEDAEEIFRKTVEKDIVVYNAMIE--GYSISIETARKALEVHCQLIKNVFFEDVKLGS 288
           G +   +++ ++ V+ D+V   +++     S S++  +   +VH  +  N    ++ + +
Sbjct: 335 GAIRLLQQMEKEGVKLDVVATTSILHACARSGSLDNGK---DVHDYIKANNMESNLFVCN 391

Query: 289 ALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348
           AL+DMY KCG +D A  VF  M  K++ +W +MI                       ++P
Sbjct: 392 ALMDMYTKCGSMDGANSVFSTMVVKDIISWNTMIGE---------------------LKP 430

Query: 349 NYVTFLGALSACGHAGLVDKGREIFESMERD-YSMKPKMEHYA-CMVDLLGRAGSLEQAL 406
           +  T    L AC     +++G+EI   + R+ YS      H A  +VDL  + G L  A 
Sbjct: 431 DSRTMACILPACASLSALERGKEIHGYILRNGYSSD---RHVANALVDLYVKCGVLGLA- 486

Query: 407 KFVLEMPEKPNSDVWAALLSSCRLH 431
           + + +M    +   W  ++S   +H
Sbjct: 487 RLLFDMIPSKDLVSWTVMISGYGMH 511



 Score = 64.7 bits (156), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 59/269 (21%), Positives = 111/269 (41%), Gaps = 60/269 (22%)

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEI--FRKTVEKDIVVYNAMIE--GYSISIETARKA 268
           +++ V    + I  F   G +E+A E+    +  E +   Y+++++    S S+   +K 
Sbjct: 62  IDRQVTDYNAKILHFCQLGNLENAMELVCMCQKSELETKTYSSVLQLCAGSKSLTDGKK- 120

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF------------ 316
             VH  +  N    D  LG  LV +YA CG + + RRVFD M++KNV+            
Sbjct: 121 --VHSIIKSNNVAVDEVLGLKLVSLYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKI 178

Query: 317 ---------------------------------------TWTSMIDGYGKNGNPNQALEL 337
                                                  +W SMI GY  NG   + LE+
Sbjct: 179 GDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLEI 238

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
           +  M    +  +  T +  L  C ++G +  G+ +  S+    + + ++     ++D+  
Sbjct: 239 YKQMMYLGIDVDLATIISVLVGCANSGTLSLGKAV-HSLAIKSTFERRINFSNTLLDMYS 297

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           + G L+ AL+   +M E+ N   W ++++
Sbjct: 298 KCGDLDGALRVFEKMGER-NVVSWTSMIA 325


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 140/437 (32%), Positives = 254/437 (58%), Gaps = 20/437 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++H +  K     N  ++   +  + KCG+L YA ++F  +  +T++++N +I G+ ++ 
Sbjct: 416 ELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSN 475

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
               SL    ++  SG  PD +T   +L A +  +S       LG+ VH  I++  ++ D
Sbjct: 476 DPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKS-----LRLGKEVHGFIIRNWLERD 530

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             +Y +++  Y+  G+    + +FD M +K+++   ++I+G++  GF + A  +FR+   
Sbjct: 531 LFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQ--- 587

Query: 246 KDIVVYNAMIEGYSIS--------IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
             +V+Y   + G S+         + + R   E H   +K++  +D  +  +L+DMYAK 
Sbjct: 588 --MVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKN 645

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G I  + +VF+ +++K+  +W +MI GYG +G   +A++LF  MQ     P+ +TFLG L
Sbjct: 646 GSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVL 705

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL-EMPEKP 416
           +AC H+GL+ +G    + M+  + +KP ++HYAC++D+LGRAG L++AL+ V  EM E+ 
Sbjct: 706 TACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEA 765

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
           +  +W +LLSSCR+H ++EM    A ++F+L   ++P  YV LSN  A  GKW+ V ++R
Sbjct: 766 DVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEP-EKPENYVLLSNLYAGLGKWEDVRKVR 824

Query: 477 EKMKLRGVLKDTGCSWV 493
           ++M    + KD GCSW+
Sbjct: 825 QRMNEMSLRKDAGCSWI 841



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 177/378 (46%), Gaps = 28/378 (7%)

Query: 64  GLKIHAHIT-KTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G KIH  ++  T ++ +  +  +++ ++  CG+   +  +FD L  + L  +N +I+ Y 
Sbjct: 103 GRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYS 162

Query: 123 KNGQVEESLSLVRKLVSSGER-PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           +N   +E L    +++S+ +  PD +T+  ++KA     S+V     +G  VH  ++K  
Sbjct: 163 RNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAG-MSDV----GIGLAVHGLVVKTG 217

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +  D  +  ALV  Y   G  + A  +FD+M E+N++   SMI  F   GF E++  +  
Sbjct: 218 LVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLG 277

Query: 242 KTVEK--------DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDM 293
           + +E+        D+     ++   +   E       VH   +K    +++ L +AL+DM
Sbjct: 278 EMMEENGDGAFMPDVATLVTVLPVCAREREIGLGK-GVHGWAVKLRLDKELVLNNALMDM 336

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC--VQPNYV 351
           Y+KCG I +A+ +F     KNV +W +M+ G+   G+ +   ++   M      V+ + V
Sbjct: 337 YSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEV 396

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL----GRAGSLEQALK 407
           T L A+  C H   +   +E+       YS+K +  +   + +       + GSL  A +
Sbjct: 397 TILNAVPVCFHESFLPSLKEL-----HCYSLKQEFVYNELVANAFVASYAKCGSLSYAQR 451

Query: 408 FVLEMPEKPNSDVWAALL 425
            V         + W AL+
Sbjct: 452 -VFHGIRSKTVNSWNALI 468



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 136/268 (50%), Gaps = 17/268 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H  I +  ++ +  + + +L L++ CG L     +FD +  ++L ++N +I GYL+
Sbjct: 515 GKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQ 574

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  + +L + R++V  G +  G   SM+     C  S +P  R LGR  HA  LK  ++
Sbjct: 575 NGFPDRALGVFRQMVLYGIQLCG--ISMMPVFGAC--SLLPSLR-LGREAHAYALKHLLE 629

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEI 239
            D  +  +L+D Y K G  + +  VF+ + EK+     +MI G+   G  ++A    EE+
Sbjct: 630 DDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEM 689

Query: 240 FRKTVEKDIVVYNAMIEG--YSISIETARKALEVHCQLIKNVFFE-DVKLGSALVDMYAK 296
            R     D + +  ++    +S  I    + L+   Q+  +   + ++K  + ++DM  +
Sbjct: 690 QRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLD---QMKSSFGLKPNLKHYACVIDMLGR 746

Query: 297 CGKIDDARRVF--DHMQQKNVFTWTSMI 322
            G++D A RV   +  ++ +V  W S++
Sbjct: 747 AGQLDKALRVVAEEMSEEADVGIWKSLL 774



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 73/327 (22%), Positives = 144/327 (44%), Gaps = 30/327 (9%)

Query: 118 IAGYLKNGQVEESLSLVRKLVSSGERP-DGY-----TFSMILKASTCCRSNVPLPRNLGR 171
           I+ + + G +++S   V++ V   E   D +        ++L+AS   R ++ + R + +
Sbjct: 50  ISNFCETGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGK-RKDIEMGRKIHQ 108

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
           +V        ++ DDVL T ++  Y   G    +R VFD +  KN+    ++IS +    
Sbjct: 109 LVSGST---RLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNE 165

Query: 232 FVEDAEEIFRKTVEK-----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
             ++  E F + +       D   Y  +I+  +  +      L VH  ++K    EDV +
Sbjct: 166 LYDEVLETFIEMISTTDLLPDHFTYPCVIKACA-GMSDVGIGLAVHGLVVKTGLVEDVFV 224

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE--- 343
           G+ALV  Y   G + DA ++FD M ++N+ +W SMI  +  NG   ++  L   M E   
Sbjct: 225 GNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENG 284

Query: 344 -CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA----CMVDLLGR 398
                P+  T +  L  C     +  G+ +       +++K +++        ++D+  +
Sbjct: 285 DGAFMPDVATLVTVLPVCAREREIGLGKGV-----HGWAVKLRLDKELVLNNALMDMYSK 339

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALL 425
            G +  A + + +M    N   W  ++
Sbjct: 340 CGCITNA-QMIFKMNNNKNVVSWNTMV 365



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 95/186 (51%), Gaps = 10/186 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G + HA+  K  ++ +  I+  L+ ++ K G++  + ++F+ L +++ +++N MI GY  
Sbjct: 616 GREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGI 675

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP--RNLGRMVHAQILKCD 181
           +G  +E++ L  ++  +G  PD  TF  +L A  C  S +     R L +M  +  LK +
Sbjct: 676 HGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTA--CNHSGLIHEGLRYLDQMKSSFGLKPN 733

Query: 182 VKADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEK-NVICSTSMISGFMSQGFVEDAEEI 239
           +K     Y  ++D   + G+   A R+V + M E+ +V    S++S       +E  E++
Sbjct: 734 LKH----YACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKV 789

Query: 240 FRKTVE 245
             K  E
Sbjct: 790 AAKLFE 795


>gi|359482011|ref|XP_002276416.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Vitis vinifera]
          Length = 629

 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 153/456 (33%), Positives = 245/456 (53%), Gaps = 15/456 (3%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           A + P A +   +   P  G ++H H+ KTG +P   +   L+ ++ KC  +  A ++FD
Sbjct: 56  AFTFPFAFKSCASLSLPLAGSQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFD 115

Query: 105 E-LPQRTLSA-YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           E    R L+  YN +IAGY  N +  +++ L R++   G   +  T   +L     C   
Sbjct: 116 ENHHSRNLAVCYNALIAGYSLNSRFSDAVLLFRQMRKEGVSVNAVT---MLGLIPVCAG- 171

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
            P+    G  +HA  ++  +  D  +   L+  YV+ G   +AR +FD M EK +I   +
Sbjct: 172 -PIHLGFGTSLHACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNA 230

Query: 223 MISGFMSQGFVEDAEEIFRK-----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIK 277
           MISG+   G      +++RK      V   + +   +     +    A + +E   +L  
Sbjct: 231 MISGYAQNGLAGHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIEL-- 288

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
           + F  +  L +AL++MYA+CG +  AR +FD M +KNV +WT++I GYG +G    A++L
Sbjct: 289 SGFGFNPFLKNALINMYARCGNLVKARAIFDGMTEKNVISWTAIIAGYGMHGQGELAVQL 348

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
           F  M      P+   F+  LSAC HAGL +KG   F +MERDY ++P  EHY+C+VDLLG
Sbjct: 349 FDEMISSDELPDGAAFVSVLSACSHAGLTEKGLYYFTAMERDYGLQPGPEHYSCVVDLLG 408

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457
           RAG LE+A K +  M  +P+  VW ALL +C++H +VE+A +A  ++ +    +  G YV
Sbjct: 409 RAGRLEEARKLIGSMSVEPDGAVWGALLGACKIHRNVELAELAFEKVIEFEPTN-IGYYV 467

Query: 458 ALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            LSN  + AG  + +  +R  M+ R + K+ GCS+V
Sbjct: 468 LLSNIFSEAGNMEGILRVRVMMRERKLKKEPGCSYV 503



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 188/377 (49%), Gaps = 18/377 (4%)

Query: 98  YAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           YA +  D   Q T +++N  +    +    +E+L+L  ++++SG+ P+ +TF    K  +
Sbjct: 10  YANKWLD--LQNTTASWNARLRELARQRHFQEALNLYCQMLASGDSPNAFTFPFAFK--S 65

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN- 216
           C   ++PL    G  +H  ++K   + +  + T+L+  Y K    + AR VFD       
Sbjct: 66  CASLSLPLA---GSQLHGHVIKTGCEPEPFVQTSLISMYCKCSTIASARKVFDENHHSRN 122

Query: 217 -VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL----EV 271
             +C  ++I+G+       DA  +FR+ + K+ V  NA+     I +      L     +
Sbjct: 123 LAVCYNALIAGYSLNSRFSDAVLLFRQ-MRKEGVSVNAVTMLGLIPVCAGPIHLGFGTSL 181

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
           H   ++     D+ +G+ L+ MY +CG +D AR++FD M +K + TW +MI GY +NG  
Sbjct: 182 HACSVRFGLDGDLSVGNCLLTMYVRCGSVDFARKLFDGMPEKGLITWNAMISGYAQNGLA 241

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME-RDYSMKPKMEHYA 390
              L+L+  M+   + P+ VT +G LS+C H G    GRE+ + +E   +   P +++  
Sbjct: 242 GHVLDLYRKMEFTGIVPDPVTLVGVLSSCAHLGAHAAGREVEQRIELSGFGFNPFLKN-- 299

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
            ++++  R G+L +A      M EK N   W A+++   +H   E+A    +E+   +  
Sbjct: 300 ALINMYARCGNLVKARAIFDGMTEK-NVISWTAIIAGYGMHGQGELAVQLFDEMISSDEL 358

Query: 451 DRPGAYVALSNTLAAAG 467
               A+V++ +  + AG
Sbjct: 359 PDGAAFVSVLSACSHAG 375


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 148/457 (32%), Positives = 247/457 (54%), Gaps = 14/457 (3%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           N  T +SL S      N     YG  IH  I K G + +  +S  L+++++K   ++   
Sbjct: 151 NQFTLSSLVSTA---TNMGDLRYGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGN 207

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           ++F+ +    L ++N +++G+  +        +  +++  G +P+ +TF  +L++   C 
Sbjct: 208 KVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRS---CS 264

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           S   L    G+ VHA I+K     DD + TALVD Y K      A + FD ++ +++   
Sbjct: 265 S--LLDPEFGKQVHAHIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSW 322

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLI 276
           T +ISG+      E A + FR+   + I        + + G S  + T     ++H   +
Sbjct: 323 TVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCS-HMATLENGRQLHAVAV 381

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           K   F D+ +GSALVD+Y KCG ++ A  +F  +  +++ +W ++I GY ++G   +ALE
Sbjct: 382 KAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALE 441

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
            F MM    + P+  TF+G LSAC   GLV++G++ F+SM + Y + P +EHYACMVD+L
Sbjct: 442 AFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDIL 501

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456
           GRAG   +   F+ EM   P S +W  +L +C+LH +V+    AA ++F++       +Y
Sbjct: 502 GRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNVDFGEKAAKKLFEMEPM-MDSSY 560

Query: 457 VALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           + LSN  A+ G+WD V  +R  M  RG+ K+ GCSWV
Sbjct: 561 ILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWV 597



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 114/489 (23%), Positives = 213/489 (43%), Gaps = 76/489 (15%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +L + L+   N+ +   G  +HA   ++G + +  +   L+ ++ KCG +  A ++F ++
Sbjct: 53  TLSTVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKI 112

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
               + A++ MI G  + G  +E+  L   +   G RP+ +T S ++  +T    N+   
Sbjct: 113 RNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTAT----NMGDL 168

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
           R  G+ +H  I K   ++D+++   L+  Y+K         VF+ M   +++   +++SG
Sbjct: 169 R-YGQSIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSG 227

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL-------------EVHC 273
           F           IF          Y  ++EG+  ++ T    L             +VH 
Sbjct: 228 FYDSQTCGRGPRIF----------YQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHA 277

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
            +IKN   +D  +G+ALVDMYAK   ++DA   FD +  +++F+WT +I GY +     +
Sbjct: 278 HIIKNSSDDDDFVGTALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEK 337

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY---- 389
           A++ F  MQ   ++PN  T    LS C H   ++ GR++       +++  K  H+    
Sbjct: 338 AVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQL-------HAVAVKAGHFGDIF 390

Query: 390 --ACMVDLLGRAGSLE----------------------------------QALKFVLEMP 413
             + +VDL G+ G +E                                  +A + +L   
Sbjct: 391 VGSALVDLYGKCGCMEHAEAIFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEG 450

Query: 414 EKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL-NANDRPGAYVALSNTLAAAGKWDSV 472
             P+   +  +LS+C     VE      + + K+   N     Y  + + L  AGK++ V
Sbjct: 451 IMPDEATFIGVLSACSFMGLVEEGKKRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEV 510

Query: 473 TELREKMKL 481
               E+M L
Sbjct: 511 KIFIEEMNL 519



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 160/348 (45%), Gaps = 16/348 (4%)

Query: 96  LKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           ++ A ++F  +P++   ++N ++ GY + G  ++ L L  K+     +   +T S +LK 
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
              C +   L    G+++HA  L+   + D+ L  +LVD Y K G    A  VF  +   
Sbjct: 61  ---CANTGSLRE--GKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNP 115

Query: 216 NVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEV 271
           +V+  ++MI+G   QG  ++A E+F    RK    +    ++++   + ++   R    +
Sbjct: 116 DVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVS-TATNMGDLRYGQSI 174

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
           H  + K  F  D  + + L+ MY K   ++D  +VF+ M   ++ +W +++ G+  +   
Sbjct: 175 HGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTC 234

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC 391
            +   +F  M     +PN  TF+  L +C      + G+++   + ++ S        A 
Sbjct: 235 GRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDFVGTA- 293

Query: 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDV--WAALLSSCRLHDDVEMA 437
           +VD+  +A  LE A    +      N D+  W  ++S     D  E A
Sbjct: 294 LVDMYAKARCLEDA---GVAFDRLVNRDIFSWTVIISGYAQTDQAEKA 338


>gi|357116318|ref|XP_003559929.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Brachypodium distachyon]
          Length = 646

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 149/466 (31%), Positives = 255/466 (54%), Gaps = 25/466 (5%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGA---------- 95
           TSLP AL+          G  +HA   ++G   +   +  LL L+ K  A          
Sbjct: 59  TSLPGALKSCAALGLRALGASLHALALRSGAFADRFAANALLNLYCKLPAPPSHSPEMDG 118

Query: 96  ----LKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
               L+   ++FDE+P++ + ++N ++ G  ++G+  E+L LVR++   G +PD +T S 
Sbjct: 119 SAVVLESVRKVFDEMPEKDVVSWNTLVLGCAESGRHGEALGLVREMWRDGCKPDSFTLSS 178

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           +L           + R  G  +H    +     D  + ++L+D Y    +T Y+  VFD 
Sbjct: 179 VLPIFA---EGADVRR--GMELHGFATRNGFHDDVFVGSSLIDMYANCTRTDYSVKVFDN 233

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARK 267
           +  ++ I   SM++G    G V++A  +FR+ +   I    V ++++I     ++ +   
Sbjct: 234 LPVRDAILWNSMLAGCAQNGSVDEALGLFRRMLHSGIKPMPVTFSSLIPACG-NLASLLL 292

Query: 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
             ++H  +I+  F  +V + S+L+DMY KCG +  ARR+FD +Q  ++ +WT+MI G+  
Sbjct: 293 GKQLHAYVIRGGFDGNVFISSSLIDMYCKCGNVSIARRIFDRIQSPDIVSWTAMIMGHAL 352

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           +G   +AL LF  M+   ++PN++TFL  L+AC HAGLVDKG + F SM   Y + P +E
Sbjct: 353 HGPAREALVLFDRMELGNLKPNHITFLAVLTACSHAGLVDKGWKYFNSMSDHYGIVPSLE 412

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           H+A + D LGR G LE+A  F+  M  KP + VW+ LL +C++H +  +A   A +IF L
Sbjct: 413 HHAALADTLGRPGKLEEAYNFISGMKIKPTASVWSTLLRACKVHKNTVLAEEVAKKIFDL 472

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
                 G+++ LSNT +++G+W+    LR+ M+ +G+ K+  CSW+
Sbjct: 473 EPRSM-GSHIILSNTYSSSGRWNEAAHLRKSMRKKGMQKEPACSWI 517


>gi|222617355|gb|EEE53487.1| hypothetical protein OsJ_36641 [Oryza sativa Japonica Group]
          Length = 921

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 151/436 (34%), Positives = 236/436 (54%), Gaps = 28/436 (6%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +H+H+ K G   +T +   L+  + K G    A ++FDE+P+R + ++N  +A  ++ G+
Sbjct: 457 VHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGE 516

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
               L+ VRKL       D  +++ IL   T             RM    +         
Sbjct: 517 ----LAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNV--------- 563

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK---- 242
           V ++ +V  Y K G    AR++FD M  KN++  T M+S    +G V++A ++F +    
Sbjct: 564 VSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEA 623

Query: 243 TVEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
           +VE D+     +  A  E  S+S+        +H  + K        + +AL+DM+ KCG
Sbjct: 624 SVELDVAAVVSILAACAESGSLSL-----GKRIHRYVRKRNLGRSTHVCNALIDMFCKCG 678

Query: 299 KIDDARRVFD-HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
            ++ A  VFD    QK+  +W S+I G+  +G+ ++ALELF  M++    P+ VT +  L
Sbjct: 679 CVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVL 738

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           SAC H G VD+GR  F +MERDY + P++EHY CM+DLLGR G +++A+  +  MP +PN
Sbjct: 739 SACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPN 798

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
             +W +LLS+CRLH +VE A IA NE+ KL  ++  G Y  LSN  A AG+W  + + R 
Sbjct: 799 EVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSN-AGNYAVLSNIYAEAGQWSDMAKARM 857

Query: 478 KMKLRGVLKDTGCSWV 493
           +MK  G  K  G SWV
Sbjct: 858 QMKGTGSQKTAGSSWV 873



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 147/290 (50%), Gaps = 14/290 (4%)

Query: 143 RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKT 202
           R D +T+S ++KA +      P+     R VH+ ++K     D  +  AL+D+Y K G  
Sbjct: 433 RRDSFTYSFLIKALSAA-GVAPV-----RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGF 486

Query: 203 SYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISI 262
           S AR VFD M E++V+   + ++  + +G +    ++F +  EKD V +N +++GY+ + 
Sbjct: 487 SDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAG 546

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
           E     +E   +L + +   +V   S +V  Y K G ++ AR +FD M  KN+ TWT M+
Sbjct: 547 E-----VEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMV 601

Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382
               + G  ++A +LF  M+E  V+ +    +  L+AC  +G +  G+ I   + R  ++
Sbjct: 602 SACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYV-RKRNL 660

Query: 383 KPKMEHYACMVDLLGRAGSLEQA-LKFVLEMPEKPNSDVWAALLSSCRLH 431
                    ++D+  + G + +A   F  E  +K +S  W +++    +H
Sbjct: 661 GRSTHVCNALIDMFCKCGCVNRADYVFDTETVQK-DSVSWNSIIGGFAMH 709



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 57/116 (49%), Gaps = 1/116 (0%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L   ++ S L     S +   G +IH ++ K  +  +T++   L+ +  KCG +  A  +
Sbjct: 627 LDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYV 686

Query: 103 FD-ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           FD E  Q+   ++N +I G+  +G  +++L L  ++   G  PD  T   +L A T
Sbjct: 687 FDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACT 742


>gi|79475105|ref|NP_193221.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122236284|sp|Q0WSH6.1|PP312_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14850; AltName: Full=Protein LOVASTATIN INSENSITIVE
           1
 gi|110735893|dbj|BAE99922.1| hypothetical protein [Arabidopsis thaliana]
 gi|332658109|gb|AEE83509.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 684

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 160/482 (33%), Positives = 247/482 (51%), Gaps = 32/482 (6%)

Query: 18  RHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVK 77
           R   +VP + TFP   +   SL  P+T                   G +IHA   K G  
Sbjct: 100 RREGVVPNDFTFPCAFKAVASLRLPVT-------------------GKQIHALAVKCGRI 140

Query: 78  PNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL 137
            +  +      ++ K      A ++FDE+P+R L  +N  I+  + +G+  E++    + 
Sbjct: 141 LDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEF 200

Query: 138 VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYV 197
                 P+  TF   L A   C   + L  NLG  +H  +L+     D  +   L+D Y 
Sbjct: 201 RRIDGHPNSITFCAFLNA---CSDWLHL--NLGMQLHGLVLRSGFDTDVSVCNGLIDFYG 255

Query: 198 KGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEG 257
           K  +   + I+F  M  KN +   S+++ ++     E A  ++ ++  KDIV  +  +  
Sbjct: 256 KCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRS-RKDIVETSDFMIS 314

Query: 258 YSISIETARKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK 313
             +S       LE    +H   +K      + +GSALVDMY KCG I+D+ + FD M +K
Sbjct: 315 SVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEK 374

Query: 314 NVFTWTSMIDGYGKNGNPNQALELFCMM--QECCVQPNYVTFLGALSACGHAGLVDKGRE 371
           N+ T  S+I GY   G  + AL LF  M  + C   PNY+TF+  LSAC  AG V+ G +
Sbjct: 375 NLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMK 434

Query: 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           IF+SM   Y ++P  EHY+C+VD+LGRAG +E+A +F+ +MP +P   VW AL ++CR+H
Sbjct: 435 IFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMH 494

Query: 432 DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
              ++  +AA  +FKL+  D  G +V LSNT AAAG+W     +RE++K  G+ K  G S
Sbjct: 495 GKPQLGLLAAENLFKLDPKD-SGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYS 553

Query: 492 WV 493
           W+
Sbjct: 554 WI 555



 Score =  111 bits (277), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 112/450 (24%), Positives = 202/450 (44%), Gaps = 25/450 (5%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLI-LHLKCGALKYAGQ 101
           L+A +L   L++ I++ +   G  +HA I KT   P        LI ++ K    + A  
Sbjct: 4   LSADALGLLLKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARL 63

Query: 102 MFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161
           +    P R + ++  +I+G  +NG    +L    ++   G  P+ +TF    KA    R 
Sbjct: 64  VLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLR- 122

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
              LP   G+ +HA  +KC    D  +  +  D Y K      AR +FD + E+N+    
Sbjct: 123 ---LPVT-GKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWN 178

Query: 222 SMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIK 277
           + IS  ++ G   +A E F    R     + + + A +   S  +      +++H  +++
Sbjct: 179 AFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHL-NLGMQLHGLVLR 237

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
           + F  DV + + L+D Y KC +I  +  +F  M  KN  +W S++  Y +N    +A  L
Sbjct: 238 SGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVL 297

Query: 338 FCMMQECCVQPNYVTFLGALSAC-GHAGLVDKGREIFESMERDYSMKPKMEHY----ACM 392
           +   ++  V+ +       LSAC G AGL + GR I       +++K  +E      + +
Sbjct: 298 YLRSRKDIVETSDFMISSVLSACAGMAGL-ELGRSI-----HAHAVKACVERTIFVGSAL 351

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR 452
           VD+ G+ G +E + +   EMPEK N     +L+        V+MA     E+        
Sbjct: 352 VDMYGKCGCIEDSEQAFDEMPEK-NLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPT 410

Query: 453 PG--AYVALSNTLAAAGKWDSVTELREKMK 480
           P    +V+L +  + AG  ++  ++ + M+
Sbjct: 411 PNYMTFVSLLSACSRAGAVENGMKIFDSMR 440



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/232 (25%), Positives = 99/232 (42%), Gaps = 9/232 (3%)

Query: 259 SISIETARKALEVHCQLIKNVFFEDVK-LGSALVDMYAKCGKIDDARRVFDHMQQKNVFT 317
           +IS  + R    VH +++K +       L + L++MY+K    + AR V      +NV +
Sbjct: 16  AISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVS 75

Query: 318 WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377
           WTS+I G  +NG+ + AL  F  M+   V PN  TF  A  A     L   G++I  ++ 
Sbjct: 76  WTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQI-HALA 134

Query: 378 RDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
                   +       D+  +    + A K   E+PE+ N + W A +S+         A
Sbjct: 135 VKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPER-NLETWNAFISNSVTDGRPREA 193

Query: 438 NIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTG 489
             A  E  +++ +     + A  N   A   W     L   M+L G++  +G
Sbjct: 194 IEAFIEFRRIDGHPNSITFCAFLN---ACSDW---LHLNLGMQLHGLVLRSG 239


>gi|227462996|gb|ACP39950.1| pentatricopeptide repeat protein [Gossypium hirsutum]
 gi|227462998|gb|ACP39951.1| pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 532

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 157/431 (36%), Positives = 236/431 (54%), Gaps = 44/431 (10%)

Query: 96  LKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           + +A ++F  LP RT   +N +I  +++  +   +LSL + ++ +G  P+ YTFS +L+A
Sbjct: 60  ISHAYKLFLSLPHRTTFIWNTIIRIFVEKNENATALSLYKNMLQTGFLPNNYTFSFVLRA 119

Query: 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
              C  N P+    G   HAQ++K   ++ D +   L+  Y        AR +FD+   +
Sbjct: 120 ---CTDNSPV----GLASHAQVIKLGWESYDFVLNGLIHLYANWSSVEAARKLFDVSTCR 172

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE----- 270
           +VI  T++I+G++  G VE A E+F +  E++ V ++AMI GY + +   R+ALE     
Sbjct: 173 DVITWTALINGYVKSGHVEFARELFDQMPERNEVSWSAMITGY-VHMGMFREALELFNDL 231

Query: 271 ------------------------------VHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
                                         +H  + +N    D  LG+ALVDMYAKCG I
Sbjct: 232 QLTGLRPNHAGIVGALTACSYLGSLDHGRWIHAYVDRNGTELDRVLGTALVDMYAKCGCI 291

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           + A  VF+ M  K+ F +TS+I G   +G    A++LF  MQ   V PN VTF+  LSAC
Sbjct: 292 EIACSVFEKMPDKDAFAFTSLISGLANHGQSADAIQLFGRMQSEKVIPNEVTFICVLSAC 351

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
              GLVD+G  IF  M   Y ++P ++HY CMVDLLGRAG LE+A + V EMP +P+S V
Sbjct: 352 SRMGLVDEGLRIFNCMSVVYGIEPGVQHYGCMVDLLGRAGLLEEAKRLVREMPMEPDSYV 411

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
             ALL+SCR+H DVE+       + +    D  G +V LSN  A++ +WD V ++R++M 
Sbjct: 412 LGALLNSCRVHGDVELGKETVESLVE-RGLDHGGVHVLLSNMYASSNQWDWVVKVRKEMG 470

Query: 481 LRGVLKDTGCS 491
            + V K  GCS
Sbjct: 471 AKKVKKVPGCS 481



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 139/292 (47%), Gaps = 45/292 (15%)

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149
           ++K G +++A ++FD++P+R   +++ MI GY+  G   E+L L   L  +G RP+    
Sbjct: 184 YVKSGHVEFARELFDQMPERNEVSWSAMITGYVHMGMFREALELFNDLQLTGLRPN---H 240

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVF 209
           + I+ A T C     L    GR +HA + +   + D VL TALVD Y K G    A  VF
Sbjct: 241 AGIVGALTACSYLGSLDH--GRWIHAYVDRNGTELDRVLGTALVDMYAKCGCIEIACSVF 298

Query: 210 DMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL 269
           + M +K+    TS+ISG  + G   DA ++F + ++ + V+ N   E   I + +A    
Sbjct: 299 EKMPDKDAFAFTSLISGLANHGQSADAIQLFGR-MQSEKVIPN---EVTFICVLSA---- 350

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ-----QKNVFTWTSMIDG 324
              C                     ++ G +D+  R+F+ M      +  V  +  M+D 
Sbjct: 351 ---C---------------------SRMGLVDEGLRIFNCMSVVYGIEPGVQHYGCMVDL 386

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM 376
            G+ G   +A  L   ++E  ++P+       L++C   G V+ G+E  ES+
Sbjct: 387 LGRAGLLEEAKRL---VREMPMEPDSYVLGALLNSCRVHGDVELGKETVESL 435



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 99/215 (46%), Gaps = 14/215 (6%)

Query: 35  NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           N+  +   LTA S   +L H         G  IHA++ + G + +  +   L+ ++ KCG
Sbjct: 239 NHAGIVGALTACSYLGSLDH---------GRWIHAYVDRNGTELDRVLGTALVDMYAKCG 289

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
            ++ A  +F+++P +   A+  +I+G   +GQ  +++ L  ++ S    P+  TF  +L 
Sbjct: 290 CIEIACSVFEKMPDKDAFAFTSLISGLANHGQSADAIQLFGRMQSEKVIPNEVTFICVLS 349

Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA-RIVFDMML 213
           A  C R  + L     R+ +   +   ++     Y  +VD   + G    A R+V +M +
Sbjct: 350 A--CSR--MGLVDEGLRIFNCMSVVYGIEPGVQHYGCMVDLLGRAGLLEEAKRLVREMPM 405

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI 248
           E +     ++++     G VE  +E     VE+ +
Sbjct: 406 EPDSYVLGALLNSCRVHGDVELGKETVESLVERGL 440


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 154/434 (35%), Positives = 247/434 (56%), Gaps = 16/434 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH    K G   N  +   L+ ++ K G + YA  +FD+L  RT+ ++  +I+GY++
Sbjct: 119 GKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQ 178

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG   E+L++ +++     +PD      ++ A T    NV      G+ +H  + K  ++
Sbjct: 179 NGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYT----NVE-DLGQGKSIHGLVTKLGLE 233

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +  +  +L   Y K G    AR  F+ M + N+I   +MISG+ + G+ E+A ++FR+ 
Sbjct: 234 FEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREM 293

Query: 244 VEKDIVVYNAMIEGYSI------SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           + K+I V +  +    +      S+E AR    +   + K+ + +D  + + L+DMYAKC
Sbjct: 294 ITKNIRVDSITMRSAVLASAQVGSLELAR---WLDGYISKSEYRDDTFVNTGLIDMYAKC 350

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G I  AR VFD +  K+V  W+ MI GYG +G+  +A+ L+  M++  V PN  TF+G L
Sbjct: 351 GSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLL 410

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           +AC ++GLV +G E+F  M  D+ ++P  +HY+C+VDLLGRAG L QA  F++ MP KP 
Sbjct: 411 TACKNSGLVKEGWELFHLMP-DHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPG 469

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
             VW ALLS+C++H  V +  IAA ++F L+  +  G YV LSN  A+A  W  V  +R 
Sbjct: 470 VSVWGALLSACKIHRKVRLGEIAAEQLFILDPYN-TGHYVQLSNLYASAHLWTRVANVRL 528

Query: 478 KMKLRGVLKDTGCS 491
            M  +G+ KD G S
Sbjct: 529 MMTQKGLNKDLGHS 542



 Score =  132 bits (331), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 200/427 (46%), Gaps = 20/427 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +++  +  +G+     + IK +   L  G + YA + F E+ +  +  +N +I GY +  
Sbjct: 20  QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKN 79

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
            V+  + +   +  S   P+ +TF  +LKA  C  ++V     +G+ +H Q  K    ++
Sbjct: 80  IVDAPIRMYMDMQISQVHPNCFTFLYVLKA--CGGTSV---EGIGKQIHGQTFKYGFGSN 134

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK--- 242
             +  +LV  Y K G+ SYARIVFD + ++ V+  TS+ISG++  G   +A  +F++   
Sbjct: 135 VFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQ 194

Query: 243 -TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
             V+ D +   +++  Y+ ++E   +   +H  + K     +  +  +L  MYAK G ++
Sbjct: 195 CNVKPDWIALVSVMTAYT-NVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVE 253

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            AR  F+ M++ N+  W +MI GY  NG   +A++LF  M    ++ + +T   A+ A  
Sbjct: 254 VARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASA 313

Query: 362 HAGLVDKGRE----IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
             G ++  R     I +S  RD +          ++D+  + GS+  A + V +     +
Sbjct: 314 QVGSLELARWLDGYISKSEYRDDTFVN-----TGLIDMYAKCGSIYLA-RCVFDRVADKD 367

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
             +W+ ++    LH   + A    NE+ +       G ++ L      +G      EL  
Sbjct: 368 VVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFH 427

Query: 478 KMKLRGV 484
            M   G+
Sbjct: 428 LMPDHGI 434



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 95/366 (25%), Positives = 150/366 (40%), Gaps = 58/366 (15%)

Query: 11  VFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTA----------------TSLPSALQH 54
           VF   H+R  T+V         +QN D    P+ A                 +L S +  
Sbjct: 157 VFDKLHDR--TVVSWTSIISGYVQNGD----PMEALNVFKEMRQCNVKPDWIALVSVMTA 210

Query: 55  YINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAY 114
           Y N +    G  IH  +TK G++   +I I L  ++ K G ++ A   F+ + +  L  +
Sbjct: 211 YTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILW 270

Query: 115 NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH 174
           N MI+GY  NG  EE++ L R++++   R D  T    + AS    S       L R + 
Sbjct: 271 NAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASAQVGS-----LELARWLD 325

Query: 175 AQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVE 234
             I K + + D  + T L+D Y K G    AR VFD + +K+V+  + MI G+   G  +
Sbjct: 326 GYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQ 385

Query: 235 DAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
           +A           I +YN M +      +     L   C   KN     VK G  L  + 
Sbjct: 386 EA-----------ICLYNEMKQAGVCPNDGTFIGLLTAC---KNSGL--VKEGWELFHLM 429

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
                        DH  + +   ++ ++D  G+ G  NQA +    M    ++P    + 
Sbjct: 430 P------------DHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMP---IKPGVSVWG 474

Query: 355 GALSAC 360
             LSAC
Sbjct: 475 ALLSAC 480


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 152/454 (33%), Positives = 248/454 (54%), Gaps = 13/454 (2%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           A  L +A++    S  P + L+     +++    N  ++  LL  + KC  L    ++FD
Sbjct: 434 ALQLFAAMRRAGYSRHPLHLLQYSHSRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFD 493

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP 164
           E+P+R   +YN +IA Y  N      L L R++   G       ++ +L  +        
Sbjct: 494 EMPERDNVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGS------ 547

Query: 165 LPR-NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
           LP  ++G+ +HAQ++   + ++D+L  AL+D Y K G    A+  F    EK+ I  T++
Sbjct: 548 LPDVHIGKQIHAQLVLLGLASEDLLGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTAL 607

Query: 224 ISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
           I+G++  G  E+A ++F    R  +  D   ++++I+  S S+       ++H  LI++ 
Sbjct: 608 ITGYVQNGQHEEALQLFSDMRRAGLRPDRATFSSIIKASS-SLAMIGLGRQLHSYLIRSG 666

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
           +   V  GS LVDMYAKCG +D+A R FD M ++N  +W ++I  Y   G    A+++F 
Sbjct: 667 YKSSVFSGSVLVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFE 726

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
            M  C   P+ VTFL  L+AC H GL D+  + F  M+  YS+ P  EHYAC++D LGR 
Sbjct: 727 GMLHCGFNPDSVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRV 786

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVAL 459
           G   Q  K ++EMP K +  +W ++L SCR+H + E+A +AA+++F +   D    YV L
Sbjct: 787 GCFSQVQKMLVEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTD-ATPYVIL 845

Query: 460 SNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           SN  A AG+W+    +++ M+ RGV K++G SWV
Sbjct: 846 SNIYARAGQWEDAACVKKIMRDRGVRKESGYSWV 879



 Score = 91.7 bits (226), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 77/301 (25%), Positives = 128/301 (42%), Gaps = 25/301 (8%)

Query: 78  PNTNISIKLLIL--HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVR 135
           P+ NI    LIL  +   G L  A  +F   P R  + +  M+  +   G+  ++LSL R
Sbjct: 284 PHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFR 343

Query: 136 KLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDS 195
            ++  G  PD  T + +L    C    VP        +H   +K  +     +   L+D+
Sbjct: 344 AMLGEGVIPDRVTVTTVLNLPGC---TVP-------SLHPFAIKFGLDTHVFVCNTLLDA 393

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMI 255
           Y K G  + AR VF  M +K+ +   +M+ G   +G    A ++F          +   +
Sbjct: 394 YCKHGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLHL 453

Query: 256 EGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
             YS S   +   L        NVF     + ++L+D Y+KC  +DD RR+FD M +++ 
Sbjct: 454 LQYSHSRSRSTSVL--------NVF-----VNNSLLDFYSKCDCLDDMRRLFDEMPERDN 500

Query: 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES 375
            ++  +I  Y  N      L LF  MQ+       + +   LS  G    V  G++I   
Sbjct: 501 VSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHAQ 560

Query: 376 M 376
           +
Sbjct: 561 L 561



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 34/202 (16%)

Query: 175 AQILKCDVKADDVLYTAL---VDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
           +Q     V   DVL   L   + S +  G    AR +FD M  KN+     ++S + S G
Sbjct: 243 SQAAPAGVTGFDVLTYRLNLGLRSLLSSGHLHRARAMFDQMPHKNIFSLNLILSAYSSSG 302

Query: 232 FVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFED-------- 283
            +  A+ +F  +  ++   +  M+  ++ +  T+  AL +   ++      D        
Sbjct: 303 DLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTS-DALSLFRAMLGEGVIPDRVTVTTVL 361

Query: 284 --------------VKLG--------SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
                         +K G        + L+D Y K G +  ARRVF  M  K+  T+ +M
Sbjct: 362 NLPGCTVPSLHPFAIKFGLDTHVFVCNTLLDAYCKHGLLAAARRVFLEMHDKDAVTYNAM 421

Query: 322 IDGYGKNGNPNQALELFCMMQE 343
           + G  K G   QAL+LF  M+ 
Sbjct: 422 MMGCSKEGLHTQALQLFAAMRR 443


>gi|449521645|ref|XP_004167840.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31430-like, partial [Cucumis sativus]
          Length = 735

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 156/469 (33%), Positives = 265/469 (56%), Gaps = 47/469 (10%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G K+   I KTG+  +  +   L+ ++ +   ++ A ++FDE+  R   ++N MI+GY++
Sbjct: 216 GEKVRGFIVKTGMDLDNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVR 275

Query: 124 NGQVEESLSLVRKLVSSG-ERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
             + E++++  R++   G E+PD  T    L A T  ++       LG  +H  + K ++
Sbjct: 276 CRRFEDAINTFREMQQEGNEKPDEATVVSTLSACTALKN-----LELGDEIHNYVRK-EL 329

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
                +  AL+D Y K G  + AR +FD M  KNVIC TSMISG+++ G + +A ++F K
Sbjct: 330 GFTTRIDNALLDMYAKCGCLNIARNIFDEMSMKNVICWTSMISGYINCGDLREARDLFDK 389

Query: 243 TVEKDIVVYNAMIEGY--------------SISIETARK----------------ALE-- 270
           +  +D+V++ AMI GY               + I+  +                 ALE  
Sbjct: 390 SPVRDVVLWTAMINGYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLGALEQG 449

Query: 271 --VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
             +H  L +N    DV +G+AL++MY+KCG +D +  +F  ++ K+  +WTS+I G   N
Sbjct: 450 KWIHGYLDENRITMDVVVGTALIEMYSKCGCVDKSLEIFYELEDKDTASWTSIICGLAMN 509

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G  ++AL LF  M+    +P+ +TF+G LSAC H GLV++GR  F SM++ + ++PK+EH
Sbjct: 510 GKTSEALRLFSEMERVGAKPDDITFIGVLSACSHGGLVEEGRRFFNSMKKVHRIEPKVEH 569

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDV----WAALLSSCRLHDDVEMANIAANEI 444
           Y C++DLLGRAG L++A + + E+P + N ++    + ALLS+CR+H++V+M    A ++
Sbjct: 570 YGCVIDLLGRAGLLDEAEELIQEIPIE-NCEIVVPLYGALLSACRIHNNVDMGERLAKKL 628

Query: 445 FKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             + + D    +  L+N  A+  +W+   ++R KMK  GV K  GCS +
Sbjct: 629 ENIESCD-SSIHTLLANIYASVDRWEDAKKVRRKMKELGVKKMPGCSLI 676



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 113/447 (25%), Positives = 206/447 (46%), Gaps = 49/447 (10%)

Query: 16  HNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTG 75
           H++    +P     PP    + S S     T+  S ++   N  +     +I + I + G
Sbjct: 69  HSKSPVYIPSFFFKPP----FSSSSASNLQTNKKSCIECLRNCKSMDQLKQIQSQIFRIG 124

Query: 76  VKPNTNISIKLLIL--HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL 133
           ++ + +   KL+        G L+YA ++F+ +   +L  YN M+  Y K G + + L L
Sbjct: 125 LEGDRDTINKLMAFCADSSLGNLRYAEKIFNYVQDPSLFVYNVMVKIYAKRGILRKVLLL 184

Query: 134 VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALV 193
            ++L   G  PDG+T+  +LKA  C R         G  V   I+K  +  D+ +Y +L+
Sbjct: 185 FQQLREDGLWPDGFTYPFVLKAIGCLRD-----VRQGEKVRGFIVKTGMDLDNYVYNSLI 239

Query: 194 DSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNA 253
           D Y +      A+ +FD M  ++ +    MISG++     EDA   FR+  ++     + 
Sbjct: 240 DMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQQEGNEKPDE 299

Query: 254 MIEGYSISIETARKAL----EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309
                ++S  TA K L    E+H  + K + F   ++ +AL+DMYAKCG ++ AR +FD 
Sbjct: 300 ATVVSTLSACTALKNLELGDEIHNYVRKELGFT-TRIDNALLDMYAKCGCLNIARNIFDE 358

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELF----------------------------CMM 341
           M  KNV  WTSMI GY   G+  +A +LF                             + 
Sbjct: 359 MSMKNVICWTSMISGYINCGDLREARDLFDKSPVRDVVLWTAMINGYVQFHHFDDAVALF 418

Query: 342 QECCVQ---PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398
           +E  +Q   P+  T +  L+ C   G +++G+ I   ++ +      +   A ++++  +
Sbjct: 419 REMQIQKIKPDKFTVVTLLTGCAQLGALEQGKWIHGYLDENRITMDVVVGTA-LIEMYSK 477

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALL 425
            G ++++L+   E+ +K  +  W +++
Sbjct: 478 CGCVDKSLEIFYELEDKDTAS-WTSII 503



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/341 (20%), Positives = 148/341 (43%), Gaps = 27/341 (7%)

Query: 171 RMVHAQILKCDVKAD----DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
           + + +QI +  ++ D    + L     DS +  G   YA  +F+ + + ++     M+  
Sbjct: 114 KQIQSQIFRIGLEGDRDTINKLMAFCADSSL--GNLRYAEKIFNYVQDPSLFVYNVMVKI 171

Query: 227 FMSQGFVEDAEEIFRKTVEK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
           +  +G +     +F++  E     D   Y  +++     +   R+  +V   ++K     
Sbjct: 172 YAKRGILRKVLLLFQQLREDGLWPDGFTYPFVLKAIG-CLRDVRQGEKVRGFIVKTGMDL 230

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC-MM 341
           D  + ++L+DMY +   +++A+++FD M  ++  +W  MI GY +      A+  F  M 
Sbjct: 231 DNYVYNSLIDMYYELSNVENAKKLFDEMTTRDSVSWNVMISGYVRCRRFEDAINTFREMQ 290

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGS 401
           QE   +P+  T +  LSAC     ++ G EI   + ++     ++++   ++D+  + G 
Sbjct: 291 QEGNEKPDEATVVSTLSACTALKNLELGDEIHNYVRKELGFTTRIDN--ALLDMYAKCGC 348

Query: 402 LEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSN 461
           L  A     EM  K N   W +++S      D+      A ++F  +       + A+ N
Sbjct: 349 LNIARNIFDEMSMK-NVICWTSMISGYINCGDLR----EARDLFDKSPVRDVVLWTAMIN 403

Query: 462 TLAAAGKWDSVTELREKMKLRGVLKD--------TGCSWVG 494
                  +D    L  +M+++ +  D        TGC+ +G
Sbjct: 404 GYVQFHHFDDAVALFREMQIQKIKPDKFTVVTLLTGCAQLG 444


>gi|449435276|ref|XP_004135421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
 gi|449493520|ref|XP_004159329.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 743

 Score =  265 bits (676), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 247/465 (53%), Gaps = 42/465 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH  I K G +    +   L+ ++ K G +  A ++F+E+P++ +  YN MI G L+
Sbjct: 157 GRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFINDANRIFEEIPEKNIVVYNTMITGLLR 216

Query: 124 -------------------------------NGQVEESLSLVRKLVSSGERPDGYTFSMI 152
                                          NG  +E++   +++   G   D +TF  +
Sbjct: 217 CRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSV 276

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L   T C   + L    G+ +HA I++ D + +  + +AL+D Y K     YA  VF  M
Sbjct: 277 L---TACGGFLALDE--GKQIHAYIIRTDYQDNIFVGSALLDMYCKCRNVKYAEAVFRKM 331

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKA 268
             KNVI  T+M+ G+   G+ E+A  IF    R  +  D     ++I   + ++ +  + 
Sbjct: 332 RHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDDFTLGSVISSCA-NLASLEEG 390

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
            + H Q + +     V + +AL+ +Y KCG ++ A ++F  M+ ++  +WT+++ GY + 
Sbjct: 391 AQFHGQALASGLICFVTVSNALITLYGKCGSLEHAHQLFHEMKIRDEVSWTALVSGYAQF 450

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G  N+ + LF  M    + P+ VTF+G LSAC  AGLV+KG   FE M +++ + P  +H
Sbjct: 451 GKANETISLFETMLAHGIVPDGVTFVGVLSACSRAGLVEKGYHYFECMVKEHRITPIPDH 510

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
           Y CM+DLL RAG LE+A  F+ +MP  P++  WA LLSSCRL+ ++E+   AA  + KL 
Sbjct: 511 YTCMIDLLSRAGRLEEAKNFINQMPFSPDAIGWATLLSSCRLNGNLEIGKWAAESLHKLE 570

Query: 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             + P +Y+ LS+  AA GKWD V +LR+ M+  GV K+ G SW+
Sbjct: 571 PQN-PASYILLSSIYAAKGKWDDVAKLRKGMREMGVKKEPGHSWI 614



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 109/385 (28%), Positives = 191/385 (49%), Gaps = 42/385 (10%)

Query: 77  KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRK 136
           +PN      LL  + K G L+   ++FD +P   + ++N +++GY  NG + ES+ +   
Sbjct: 68  QPNLFSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNM 127

Query: 137 LVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDS 195
           ++  G    +  TFS +L  S+  R  V    +LGR +H QI K   ++   + + LVD 
Sbjct: 128 MLKDGSVNLNRITFSTMLILSSN-RGFV----DLGRQIHGQIFKFGYQSYLFVGSPLVDM 182

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAM- 254
           Y K G  + A  +F+ + EKN++   +MI+G +   F+ +AE++F    EKD + +  + 
Sbjct: 183 YAKTGFINDANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTII 242

Query: 255 --------------------IEGYSI------SIETA-------RKALEVHCQLIKNVFF 281
                               IEG+ +      S+ TA        +  ++H  +I+  + 
Sbjct: 243 TGLTQNGLFKEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQ 302

Query: 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM 341
           +++ +GSAL+DMY KC  +  A  VF  M+ KNV +WT+M+ GYG+NG   +A+ +FC M
Sbjct: 303 DNIFVGSALLDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDM 362

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGS 401
           Q   + P+  T    +S+C +   +++G + F        +   +     ++ L G+ GS
Sbjct: 363 QRNEIHPDDFTLGSVISSCANLASLEEGAQ-FHGQALASGLICFVTVSNALITLYGKCGS 421

Query: 402 LEQALKFVLEMPEKPNSDVWAALLS 426
           LE A +   EM  +     W AL+S
Sbjct: 422 LEHAHQLFHEMKIRDEVS-WTALVS 445



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 97/445 (21%), Positives = 178/445 (40%), Gaps = 117/445 (26%)

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
           CC +     R   + +H +I++     +  LY  L+++Y K G    AR VFD + + N+
Sbjct: 15  CCEAR---NRAQVKKLHCRIIRTLTNPETFLYNNLINTYGKLGDLKNARNVFDHIPQPNL 71

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY------------------- 258
               +++S +   G+++D + +F      D+V +N+++ GY                   
Sbjct: 72  FSWNTLLSAYSKLGYLQDMQRVFDSMPNHDVVSWNSLLSGYAGNGLISESVRVYNMMLKD 131

Query: 259 -----------SISIETARKAL-----EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
                      ++ I ++ +       ++H Q+ K  +   + +GS LVDMYAK G I+D
Sbjct: 132 GSVNLNRITFSTMLILSSNRGFVDLGRQIHGQIFKFGYQSYLFVGSPLVDMYAKTGFIND 191

Query: 303 ARRVFDHMQQKNV-------------------------------FTWTSMIDGYGKNGNP 331
           A R+F+ + +KN+                                +WT++I G  +NG  
Sbjct: 192 ANRIFEEIPEKNIVVYNTMITGLLRCRFIVEAEQLFDNMPEKDSISWTTIITGLTQNGLF 251

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER-DY---------- 380
            +A++ F  M       +  TF   L+ACG    +D+G++I   + R DY          
Sbjct: 252 KEAVDKFKEMGIEGFCMDQFTFGSVLTACGGFLALDEGKQIHAYIIRTDYQDNIFVGSAL 311

Query: 381 --------------SMKPKMEH-----YACMVDLLGRAGSLEQALKFVLEMPEK---PNS 418
                         ++  KM H     +  M+   G+ G  E+A++   +M      P+ 
Sbjct: 312 LDMYCKCRNVKYAEAVFRKMRHKNVISWTAMLVGYGQNGYSEEAVRIFCDMQRNEIHPDD 371

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNA-NDRPGAYVALSNTL----AAAGKWDSVT 473
               +++SSC       +A++     F   A       +V +SN L       G  +   
Sbjct: 372 FTLGSVISSC-----ANLASLEEGAQFHGQALASGLICFVTVSNALITLYGKCGSLEHAH 426

Query: 474 ELREKMKLRGVLKDTGCSWVGTESG 498
           +L  +MK+R  +     SW    SG
Sbjct: 427 QLFHEMKIRDEV-----SWTALVSG 446


>gi|297797743|ref|XP_002866756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312591|gb|EFH43015.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 649

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 162/468 (34%), Positives = 244/468 (52%), Gaps = 43/468 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLL---ILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +IHA + KTG+  ++    K L   I       L YA  +FD   +     +N MI G+ 
Sbjct: 61  QIHARMLKTGLIQDSYAITKFLSCCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFS 120

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            + + E SL L ++++      + YTF  +LKA   C +   L       +HAQI K   
Sbjct: 121 CSDEPERSLLLYQRMLCCSAPHNAYTFPSLLKA---CSNLSALEETT--QIHAQITKLGY 175

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           + D     +L++SY   G    A ++FD + + + +   S+I G+   G ++ A  +FRK
Sbjct: 176 ENDVYAVNSLINSYAATGNFKLAHLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRK 235

Query: 243 TVEKDIVVYNAMIEGY------------------------SISIETARKA------LE-- 270
            VEK+ + +  MI GY                        ++S+  A  A      LE  
Sbjct: 236 MVEKNAISWTTMISGYVQAGMHKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQG 295

Query: 271 --VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
             +H  L K     D  LG  L+DMYAKCG + +A  VF ++Q+K+V  WT++I GY  +
Sbjct: 296 KWIHSYLTKTRIRMDSVLGCVLIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYH 355

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G+  +A+  F  MQ+  ++PN +TF   L+AC + GLV++G+ IF +MERDY++KP +EH
Sbjct: 356 GHGREAISKFMEMQKMGIKPNVITFTTVLTACSYTGLVEEGKLIFYNMERDYNLKPTIEH 415

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
           Y C+VDLL RAG L++A +F+ EMP KPN+ +W ALL +CR+H ++E+      EI    
Sbjct: 416 YGCVVDLLSRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGE-EIGEILIAI 474

Query: 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
                G YV  +N  A   KWD   E R  MK +GV K  GCS +  E
Sbjct: 475 DPYHGGRYVHKANIHAMGKKWDKAAETRRLMKEQGVAKVPGCSTISLE 522



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 77/320 (24%), Positives = 135/320 (42%), Gaps = 43/320 (13%)

Query: 40  SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYA 99
           S P  A + PS L+   N        +IHA ITK G + +      L+  +   G  K A
Sbjct: 139 SAPHNAYTFPSLLKACSNLSALEETTQIHAQITKLGYENDVYAVNSLINSYAATGNFKLA 198

Query: 100 GQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL---------------VSSGERP 144
             +FD +P+    ++N +I GY K G+++ +L+L RK+               V +G   
Sbjct: 199 HLLFDRIPKPDAVSWNSVIKGYAKAGKMDIALTLFRKMVEKNAISWTTMISGYVQAGMHK 258

Query: 145 DGYTFSMILKASTCCRSNVPLPRNL-----------GRMVHAQILKCDVKADDVLYTALV 193
           +       ++ S     NV L   L           G+ +H+ + K  ++ D VL   L+
Sbjct: 259 EALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLTKTRIRMDSVLGCVLI 318

Query: 194 DSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEIFRKTVEKDIV 249
           D Y K G    A  VF  +  K+V   T++ISG+   G   +A     E+ +  ++ +++
Sbjct: 319 DMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVI 378

Query: 250 VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSAL------VDMYAKCGKIDDA 303
            +  ++   S +       L    +LI      D  L   +      VD+ ++ G +D+A
Sbjct: 379 TFTTVLTACSYT------GLVEEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDEA 432

Query: 304 RRVFDHMQQK-NVFTWTSMI 322
           +R    M  K N   W +++
Sbjct: 433 KRFIQEMPLKPNAVIWGALL 452



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 51/216 (23%), Positives = 107/216 (49%), Gaps = 22/216 (10%)

Query: 32  KLQNYD------SLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIK 85
           ++QN D      SL+N L+A +   AL+          G  IH+++TKT ++ ++ +   
Sbjct: 266 EMQNSDVEPDNVSLANALSACAQLGALEQ---------GKWIHSYLTKTRIRMDSVLGCV 316

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           L+ ++ KCG +  A ++F  + ++++ A+  +I+GY  +G   E++S   ++   G +P+
Sbjct: 317 LIDMYAKCGDMGEALEVFKNIQRKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPN 376

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK-CDVKADDVLYTALVDSYVKGGKTSY 204
             TF+ +L A  C  + +      G+++   + +  ++K     Y  +VD   + G    
Sbjct: 377 VITFTTVLTA--CSYTGLV---EEGKLIFYNMERDYNLKPTIEHYGCVVDLLSRAGLLDE 431

Query: 205 A-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
           A R + +M L+ N +   +++        +E  EEI
Sbjct: 432 AKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEI 467


>gi|242094978|ref|XP_002437979.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
 gi|241916202|gb|EER89346.1| hypothetical protein SORBIDRAFT_10g005810 [Sorghum bicolor]
          Length = 657

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 153/423 (36%), Positives = 234/423 (55%), Gaps = 14/423 (3%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           +T+L S+L+    +     G  +H +  K G+  + ++   L+ L+ KCG +  A  +FD
Sbjct: 212 STTLASSLRAAAEASHVAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDCARSLFD 271

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP 164
            +    L AYN +I+GY  NG VE S+ L ++L +S  RP+  T   ++   +      P
Sbjct: 272 RMEDPDLVAYNALISGYSVNGMVESSVELFKELAASDWRPNSSTLVAVIPVYS------P 325

Query: 165 LPRNL-GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
               L  R +HA ++K  + AD ++ TAL   Y +      AR +FD M EK +    +M
Sbjct: 326 FGHELLARCLHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMPEKTMESWNAM 385

Query: 224 ISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNV 279
           ISG+   G  E A E+F+   E ++      I   ++S      AL     VH  + K  
Sbjct: 386 ISGYAQNGLTEMAVELFQLMQELNVQPNPTTISS-TLSACAQLGALSLGTWVHRIIAKEN 444

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
              +V + +AL+DMYAKCG I +AR +FD M  KNV +W +MI GYG +G   +AL+L+ 
Sbjct: 445 LELNVYVMTALIDMYAKCGSIAEARSIFDRMDNKNVVSWNAMISGYGLHGRGAEALKLYK 504

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
            M + C+ P   TFL  L AC H GLVD+G+++F  M  +Y + P +EH  CMVDLLGRA
Sbjct: 505 SMLDACILPTSSTFLSVLYACSHGGLVDEGQKVFRVMTNEYRISPGIEHCTCMVDLLGRA 564

Query: 400 GSLEQALKFVLEMPEKP-NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVA 458
           G L +AL  + E P+      VW ALLS+C +H + ++A +A+ ++F+L+ ++  G YV 
Sbjct: 565 GKLNEALDLISEFPQSAIGPGVWGALLSACMVHKNSDLAKLASQKLFELD-SENAGYYVL 623

Query: 459 LSN 461
           LSN
Sbjct: 624 LSN 626



 Score =  142 bits (359), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 104/370 (28%), Positives = 177/370 (47%), Gaps = 17/370 (4%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +H      G   +T ++  L  L+ K   +  A ++FD +P      +N ++AG   +  
Sbjct: 136 LHGLSVAAGYAADTFVASALAKLYFKLSKVDDARKVFDAVPSPDTILWNTLLAGLPGSVA 195

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
           +E   + VR +     RPD  T +  L+A+    S+V     +GR VH   +KC +   +
Sbjct: 196 LE---AFVRMVEVGRVRPDSTTLASSLRAAAEA-SHVA----MGRCVHGYGVKCGLAEHE 247

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
            + T L+  Y K G    AR +FD M + +++   ++ISG+   G VE + E+F++    
Sbjct: 248 HVVTGLMSLYSKCGDMDCARSLFDRMEDPDLVAYNALISGYSVNGMVESSVELFKELAAS 307

Query: 247 DI----VVYNAMIEGYS-ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
           D         A+I  YS    E   + L  H  ++K     D  + +AL  +Y +   ++
Sbjct: 308 DWRPNSSTLVAVIPVYSPFGHELLARCL--HAFVVKARLDADALVSTALTTLYCRLNDME 365

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            AR +FD M +K + +W +MI GY +NG    A+ELF +MQE  VQPN  T    LSAC 
Sbjct: 366 SARSIFDAMPEKTMESWNAMISGYAQNGLTEMAVELFQLMQELNVQPNPTTISSTLSACA 425

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
             G +  G  +   + ++ +++  +     ++D+  + GS+ +A      M  K N   W
Sbjct: 426 QLGALSLGTWVHRIIAKE-NLELNVYVMTALIDMYAKCGSIAEARSIFDRMDNK-NVVSW 483

Query: 422 AALLSSCRLH 431
            A++S   LH
Sbjct: 484 NAMISGYGLH 493



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 148/341 (43%), Gaps = 27/341 (7%)

Query: 144 PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTS 203
           PD ++F+    + +   S+        R +H   +     AD  + +AL   Y K  K  
Sbjct: 107 PDSFSFAFAATSLSSSCSSRGRDAAAARTLHGLSVAAGYAADTFVASALAKLYFKLSKVD 166

Query: 204 YARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI--S 261
            AR VFD +   + I   ++++G    G V  A E F + VE   V  ++     S+  +
Sbjct: 167 DARKVFDAVPSPDTILWNTLLAGL--PGSV--ALEAFVRMVEVGRVRPDSTTLASSLRAA 222

Query: 262 IETARKALE--VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWT 319
            E +  A+   VH   +K    E   + + L+ +Y+KCG +D AR +FD M+  ++  + 
Sbjct: 223 AEASHVAMGRCVHGYGVKCGLAEHEHVVTGLMSLYSKCGDMDCARSLFDRMEDPDLVAYN 282

Query: 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL---SACGHAGLVDKGREIFESM 376
           ++I GY  NG    ++ELF  +     +PN  T +  +   S  GH        E+    
Sbjct: 283 ALISGYSVNGMVESSVELFKELAASDWRPNSSTLVAVIPVYSPFGH--------ELLARC 334

Query: 377 ERDYSMKPKMEHYA----CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHD 432
              + +K +++  A     +  L  R   +E A      MPEK   + W A++S    + 
Sbjct: 335 LHAFVVKARLDADALVSTALTTLYCRLNDMESARSIFDAMPEK-TMESWNAMISGYAQNG 393

Query: 433 DVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473
             EMA      + +LN    P     +S+TL+A  +  +++
Sbjct: 394 LTEMAVELFQLMQELNVQPNP---TTISSTLSACAQLGALS 431


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  265 bits (676), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 142/434 (32%), Positives = 238/434 (54%), Gaps = 9/434 (2%)

Query: 63   YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
            +G  +HA + K  ++ N  I   LL ++ KCG+ + A  +F  + +R + A+  MIAG+ 
Sbjct: 768  FGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFC 827

Query: 123  KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            +N + +++L L R +   G + D    + ++ A      NV     LG ++H   +K  +
Sbjct: 828  QNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLE-NV----ELGHLIHGFAIKRGL 882

Query: 183  KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            ++D  +  +LVD Y K G    A +VF  M  KN++   SMIS +   G  E +  +  +
Sbjct: 883  ESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQ 942

Query: 243  TVEKDIVVYNAMIEGYSISIETARKALE---VHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
             ++    + +  I    +++ +    L+   +H   I+     D+++ +AL+DMY KCG 
Sbjct: 943  ILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGC 1002

Query: 300  IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
            +  A+ +F++M ++N+ TW SMI GYG +GN  +A+ LF  M+     P+ VTFL  +++
Sbjct: 1003 LKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITS 1062

Query: 360  CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
            C H+G+V++G  +F+ M  +Y ++P+MEHYA +VDLLGRAG L+ A  F+  MP   +  
Sbjct: 1063 CSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRS 1122

Query: 420  VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
            VW  LL +CR H ++E+  + A+ + K+    R   YV L N       WD    LR  M
Sbjct: 1123 VWLCLLFACRAHRNMELGELVADNLLKMEP-ARGSNYVPLLNLYGEVEMWDRAANLRASM 1181

Query: 480  KLRGVLKDTGCSWV 493
            K RG+ K  GCSW+
Sbjct: 1182 KGRGLKKSPGCSWI 1195



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 117/418 (27%), Positives = 195/418 (46%), Gaps = 37/418 (8%)

Query: 19  HYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKP 78
           H  L     TFP  L+   SLSN                    ++G  IHA I   G++ 
Sbjct: 434 HSALTTAKFTFPSLLKTCASLSNL-------------------YHGRTIHASIVTMGLQS 474

Query: 79  NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSA-----YNYMIAGYLKNGQVEESLSL 133
           +  I+  L+ +++KCG L  A Q+FD++ +   SA     +N +I GY K G  EE L+ 
Sbjct: 475 DPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQ 534

Query: 134 VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALV 193
             ++   G RPDGY+ S++L    C R +  +    GR +H  I++   + D  L TAL+
Sbjct: 535 FCRMQELGIRPDGYSLSIVL--GICNRLSWYMA---GRQIHGYIIRNMFEGDPYLETALI 589

Query: 194 DSYVKGGKTSYARIVFDMMLEK-NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN 252
             Y    +   A  +F  +  + N++    MI GF+  G  E + E++     ++  + +
Sbjct: 590 GMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVS 649

Query: 253 AMIEGYSISI---ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309
           A   G   +    E      +VHC +IK  F +D  + ++L+ MYAK G ++DA++VFD 
Sbjct: 650 ASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQ 709

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKG 369
           +  K V    +MI  +  NG    AL L+  M+      +  T    LS C   G  D G
Sbjct: 710 VLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFG 769

Query: 370 REIF-ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           R +  E ++R  SM+  +   + ++ +  + GS E A      M E+ +   W ++++
Sbjct: 770 RTVHAEVIKR--SMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKER-DVVAWGSMIA 824



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 111/444 (25%), Positives = 207/444 (46%), Gaps = 14/444 (3%)

Query: 43   LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
            L + S   A     + +   +G ++H  + K   + +  +   LL ++ K G+++ A ++
Sbjct: 647  LVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKV 706

Query: 103  FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERP-DGYTFSMILKASTCCRS 161
            FD++  + +   N MI+ ++ NG+  ++L L  K+  +GE P D +T S +L   +   S
Sbjct: 707  FDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKM-KAGETPVDSFTISSLLSGCSVVGS 765

Query: 162  NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
                  + GR VHA+++K  ++++  + +AL+  Y K G T  A  VF  M E++V+   
Sbjct: 766  -----YDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWG 820

Query: 222  SMISGFMSQGFVEDAEEIFR----KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIK 277
            SMI+GF      +DA ++FR    + V+ D  V  ++I    + +E       +H   IK
Sbjct: 821  SMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISA-GLGLENVELGHLIHGFAIK 879

Query: 278  NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
                 DV +  +LVDMY+K G  + A  VF  M  KN+  W SMI  Y  NG P  ++ L
Sbjct: 880  RGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINL 939

Query: 338  FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
               + +     + V+    L A      + KG+ +     R   +   ++    ++D+  
Sbjct: 940  LPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIR-LQIPSDLQVENALIDMYV 998

Query: 398  RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457
            + G L+ A      MP + N   W ++++    H + E A     E+ +         ++
Sbjct: 999  KCGCLKYAQLIFENMPRR-NLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFL 1057

Query: 458  ALSNTLAAAGKWDSVTELREKMKL 481
            AL  + + +G  +    L + M++
Sbjct: 1058 ALITSCSHSGMVEEGLNLFQLMRI 1081


>gi|108862877|gb|ABA99065.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 491

 Score =  264 bits (675), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 151/436 (34%), Positives = 236/436 (54%), Gaps = 28/436 (6%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +H+H+ K G   +T +   L+  + K G    A ++FDE+P+R + ++N  +A  ++ G+
Sbjct: 27  VHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGE 86

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
               L+ VRKL       D  +++ IL   T             RM    +         
Sbjct: 87  ----LAGVRKLFDEMPEKDTVSWNTILDGYTKAGEVEAAFELFQRMPERNV--------- 133

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK---- 242
           V ++ +V  Y K G    AR++FD M  KN++  T M+S    +G V++A ++F +    
Sbjct: 134 VSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMVSACAQKGLVDEAGKLFAQMKEA 193

Query: 243 TVEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
           +VE D+     +  A  E  S+S+        +H  + K        + +AL+DM+ KCG
Sbjct: 194 SVELDVAAVVSILAACAESGSLSL-----GKRIHRYVRKRNLGRSTHVCNALIDMFCKCG 248

Query: 299 KIDDARRVFD-HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
            ++ A  VFD    QK+  +W S+I G+  +G+ ++ALELF  M++    P+ VT +  L
Sbjct: 249 CVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVL 308

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           SAC H G VD+GR  F +MERDY + P++EHY CM+DLLGR G +++A+  +  MP +PN
Sbjct: 309 SACTHMGFVDEGRRHFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIKSMPWEPN 368

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
             +W +LLS+CRLH +VE A IA NE+ KL  ++  G Y  LSN  A AG+W  + + R 
Sbjct: 369 EVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSN-AGNYAVLSNIYAEAGQWSDMAKARM 427

Query: 478 KMKLRGVLKDTGCSWV 493
           +MK  G  K  G SWV
Sbjct: 428 QMKGTGSQKTAGSSWV 443



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 79/290 (27%), Positives = 147/290 (50%), Gaps = 14/290 (4%)

Query: 143 RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKT 202
           R D +T+S ++KA +      P+     R VH+ ++K     D  +  AL+D+Y K G  
Sbjct: 3   RRDSFTYSFLIKALSAA-GVAPV-----RAVHSHVVKLGSVEDTFVGNALIDAYSKNGGF 56

Query: 203 SYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISI 262
           S AR VFD M E++V+   + ++  + +G +    ++F +  EKD V +N +++GY+ + 
Sbjct: 57  SDARKVFDEMPERDVVSWNTAMAAMVREGELAGVRKLFDEMPEKDTVSWNTILDGYTKAG 116

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
           E     +E   +L + +   +V   S +V  Y K G ++ AR +FD M  KN+ TWT M+
Sbjct: 117 E-----VEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPSKNLVTWTIMV 171

Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382
               + G  ++A +LF  M+E  V+ +    +  L+AC  +G +  G+ I   + R  ++
Sbjct: 172 SACAQKGLVDEAGKLFAQMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYV-RKRNL 230

Query: 383 KPKMEHYACMVDLLGRAGSLEQA-LKFVLEMPEKPNSDVWAALLSSCRLH 431
                    ++D+  + G + +A   F  E  +K +S  W +++    +H
Sbjct: 231 GRSTHVCNALIDMFCKCGCVNRADYVFDTETVQK-DSVSWNSIIGGFAMH 279



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/119 (26%), Positives = 58/119 (48%), Gaps = 1/119 (0%)

Query: 40  SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYA 99
           S  L   ++ S L     S +   G +IH ++ K  +  +T++   L+ +  KCG +  A
Sbjct: 194 SVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRA 253

Query: 100 GQMFD-ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
             +FD E  Q+   ++N +I G+  +G  +++L L  ++   G  PD  T   +L A T
Sbjct: 254 DYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDAVTMINVLSACT 312


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  264 bits (675), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 148/451 (32%), Positives = 256/451 (56%), Gaps = 11/451 (2%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +  S L+  +  +    G  +H    KT       + ++L+ L++K G +  A Q+F+E+
Sbjct: 248 TFASVLKACVGLEVFNVGKAVHGCAFKTSYLEELFVGVELIDLYIKSGDVDDALQVFEEM 307

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P+  +  +++MIA Y ++ Q EE++ +  ++      P+ +T + +L+A   C S V L 
Sbjct: 308 PKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQA---CASLVDL- 363

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
             LG  +H  ++K  +  +  +  AL+D Y K G+   +  +F        +   ++I G
Sbjct: 364 -QLGNQIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVG 422

Query: 227 FMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
           ++  G  E A  +F+  +E  +    V Y++++   +  I       ++H   +K ++ +
Sbjct: 423 YVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACA-GIAALEPGSQIHSLSVKTIYDK 481

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           +  +G+AL+DMYAKCG I DAR VFD +++ +  +W +MI GY  +G   +AL+ F  M 
Sbjct: 482 NTVVGNALIDMYAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESML 541

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
           E   +P+ VTF+G LSAC +AGL+D+G+  F+SM  +Y ++P  EHY CMV LLGR+G L
Sbjct: 542 ETECKPDKVTFVGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHL 601

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
           ++A K V E+P +P+  VW ALLS+C +H+DVE+  I+A  + ++   D    +V LSN 
Sbjct: 602 DKAAKLVHEIPFEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDE-ATHVLLSNI 660

Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            A A +W +V  +R  MK +G+ K+ G SW+
Sbjct: 661 YANARRWGNVASIRTSMKRKGIRKEPGLSWI 691



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 176/370 (47%), Gaps = 15/370 (4%)

Query: 50  SALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQR 109
           S LQ  I +     G  +H  I K G   +   +  LL  ++K  +L  A ++FDE+P R
Sbjct: 49  SLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMPDR 108

Query: 110 TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL 169
              ++  +I GY +  +  E++ L  +L   G   + + FS +LK              L
Sbjct: 109 NTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEW-----AKL 163

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           G  VHA + K    +D  + TAL+D Y   G    AR VFD +  K+++  T M++ ++ 
Sbjct: 164 GFSVHACVYKLGFDSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVE 223

Query: 230 QGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
               E++ ++F +      + +   + ++++   + +E       VH    K  + E++ 
Sbjct: 224 NECFEESLKLFSRMRIVGFKPNNFTFASVLKA-CVGLEVFNVGKAVHGCAFKTSYLEELF 282

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           +G  L+D+Y K G +DDA +VF+ M + +V  W+ MI  Y ++    +A+E+FC M+   
Sbjct: 283 VGVELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGL 342

Query: 346 VQPNYVTFLGALSACGHAGLVD--KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE 403
           V PN  T    L AC  A LVD   G +I   + +   +   +     ++D+  + G +E
Sbjct: 343 VLPNQFTLASLLQAC--ASLVDLQLGNQIHCHVVK-VGLDMNVFVSNALMDMYAKCGRME 399

Query: 404 QALKFVLEMP 413
            +L+   E P
Sbjct: 400 NSLQLFSESP 409


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  264 bits (675), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 152/444 (34%), Positives = 239/444 (53%), Gaps = 17/444 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           KIH  + K G++ +  I   L+  +LK G +++A   F+ELP R +  +N M+ GY + G
Sbjct: 77  KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIG 136

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           Q E  L   R++      P  +T + IL         V    N GR++H   +K    + 
Sbjct: 137 QFEMVLETFRRMNDESVVPSRFTVTGILSVFA-----VMGDLNNGRIIHGFAMKMGYDSG 191

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS----QGFVEDAEEIFR 241
             +  +L+D Y K      A  +F+MM EK++    S+ S         G +   + +  
Sbjct: 192 VAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLG 251

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVF------FEDVKLGSALVDMYA 295
             ++ D+V    ++   S  +       E+H  +I +         +DV L +A++DMYA
Sbjct: 252 AGIQPDLVTVTTVLPACS-HLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYA 310

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KCG + DA  VF+ M  K+V +W  MI GYG +G  N+ALE+F  M E  ++P+ VTF+G
Sbjct: 311 KCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVG 370

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            LSAC HAG V +GR     M+  Y + P +EHY C++D+LGRAG L++A +  L MP +
Sbjct: 371 VLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIE 430

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
            N  VW ALL++CRLH    +A +AA  +F+L   +  G+YV +SN   A G+++ V E+
Sbjct: 431 ANPVVWRALLAACRLHKHAVLAEVAAQRVFELEP-EHCGSYVLMSNVYGAVGRYEEVLEV 489

Query: 476 REKMKLRGVLKDTGCSWVGTESGL 499
           R  M+ + V K  GCSW+  ++G+
Sbjct: 490 RHTMRQQNVRKTPGCSWIELKNGV 513



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 170/353 (48%), Gaps = 20/353 (5%)

Query: 89  LHLKCGALKYAGQMF-DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGY 147
           ++ KC  + +A  +F D   +  + A+N +I+G++ NG  EE     +K+ + G  PD +
Sbjct: 1   MYSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKF 60

Query: 148 TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARI 207
           TF   +KA   C   + + +     +H  + K  ++ D  + +ALV+ Y+K G   +A++
Sbjct: 61  TFPCAIKA---CLDVLEIKK-----IHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQV 112

Query: 208 VFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARK 267
            F+ +  ++V+   +M++G+   G  E   E FR+  ++ +V     + G  +S+     
Sbjct: 113 AFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGI-LSVFAVMG 171

Query: 268 ALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMID 323
            L     +H   +K  +   V + ++L+DMY KC  I+DA  +F+ M++K++F+W S+  
Sbjct: 172 DLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXS 231

Query: 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE-----IFESMER 378
            + + G+ +  L L   M    +QP+ VT    L AC H   +  GRE     I   + +
Sbjct: 232 VHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGK 291

Query: 379 DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           D      +     ++D+  + GS+  A   V E     +   W  ++    +H
Sbjct: 292 DGKDIDDVLLKNAVIDMYAKCGSMRDA-HLVFERMXNKDVASWNIMIMGYGMH 343



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 153/359 (42%), Gaps = 61/359 (16%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH    K G      +S  L+ ++ KC  ++ A ++F+ + ++ + ++N + + + +
Sbjct: 176 GRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQ 235

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G  + +L L+ +++ +G +PD  T + +L A +   + +      G M+ + + K    
Sbjct: 236 CGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKD 295

Query: 184 ADDVLY-TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            DDVL   A++D Y K G    A +VF+ M  K+V     MI G+   G+  +A E+F +
Sbjct: 296 IDDVLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSR 355

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC---GK 299
             E  +                  K  EV                   V + + C   G 
Sbjct: 356 MCEVQL------------------KPDEV-----------------TFVGVLSACSHAGF 380

Query: 300 IDDARRVFDHMQQK-----NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           +   R     M+ K      +  +T +ID  G+ G  ++A EL   M    ++ N V + 
Sbjct: 381 VSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMP---IEANPVVWR 437

Query: 355 GALSAC---GHAGLVDKGREIFESMERDYSMKPKMEH---YACMVDLLGRAGSLEQALK 407
             L+AC    HA L +       + +R + ++P  EH   Y  M ++ G  G  E+ L+
Sbjct: 438 ALLAACRLHKHAVLAEV------AAQRVFELEP--EHCGSYVLMSNVYGAVGRYEEVLE 488


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  264 bits (675), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 144/431 (33%), Positives = 242/431 (56%), Gaps = 9/431 (2%)

Query: 66   KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
            K HA I   G++ ++ I  K  I+++    +  A  +F+++P      +N MI G+  +G
Sbjct: 738  KTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDG 797

Query: 126  QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
            +   SL L  K++  G +PD + F   LK+   C     L R  G+++H  ++ C    D
Sbjct: 798  RFLSSLELYSKMMEKGLKPDKFAFPFALKS---CAGLSDLQR--GKVIHQHLVCCGCSND 852

Query: 186  DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
              +  ALVD Y K G    AR+VFD M  ++++  TSMISG+   G+  +    F     
Sbjct: 853  LFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRS 912

Query: 246  KDIVVYNAMIEGYSIS---IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
              ++     I    ++   +   RK    H  +I+  F  D+ + +A++DMY+KCG +D 
Sbjct: 913  SGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDL 972

Query: 303  ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
            AR +FD    K++  W++MI  YG +G+  +A++LF  M +  V+P++VTF   LSAC H
Sbjct: 973  ARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSH 1032

Query: 363  AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
            +GL+++G+  F+ M  ++ +  K+ +YACMVDLLGRAG L +A+  +  MP +P++ +W 
Sbjct: 1033 SGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWG 1092

Query: 423  ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
            +LL +CR+H+++++A   A+ +F L+     G +V LSN  AA  +W+ V ++R+ M  R
Sbjct: 1093 SLLGACRIHNNLDLAEKIADHLFHLDPV-HAGYHVLLSNIYAAKSRWNEVEKVRKMMARR 1151

Query: 483  GVLKDTGCSWV 493
            G  K  G S V
Sbjct: 1152 GANKIQGFSLV 1162



 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 155/465 (33%), Positives = 252/465 (54%), Gaps = 17/465 (3%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           +P+T  S+ SA    +N      G  +H  + +     +  +   LL L+ K G  K A 
Sbjct: 205 DPVTLVSVVSACAQLLNVKA---GSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAA 261

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
            +F ++P++ + +++ MIA Y  N    E+L+L  +++     P+  T    L+A     
Sbjct: 262 NLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACA--- 318

Query: 161 SNVPLPRNL--GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI 218
               + RNL  G+ +H   +    + D  + TAL+D Y+K      A  +F  + +K+V+
Sbjct: 319 ----VSRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVV 374

Query: 219 CSTSMISGFMSQGFVEDAEEIFRKTVEKDI---VVYNAMIEGYSISIETARKALEVHCQL 275
              +++SG+   G    +  +FR  +   I    V    I   S  +   ++AL +H  +
Sbjct: 375 SWVALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQALCLHGYV 434

Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
           +++ F  +V +G++L+++Y+KCG + DA ++F  M  ++V  W+SMI  YG +G   +AL
Sbjct: 435 VRSGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEAL 494

Query: 336 ELF-CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394
           E+F  M++   V+PN VTFL  LSAC HAGLV++G +IF+ M  DY ++P  EH+  MVD
Sbjct: 495 EIFDQMVKNSTVRPNNVTFLSILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVD 554

Query: 395 LLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG 454
           LLGR G L +A+  +  MP      VW ALL +CR+H ++EM   AA  +F L+ +   G
Sbjct: 555 LLGRIGQLGKAMDIINRMPIPAGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPS-HAG 613

Query: 455 AYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
            Y+ LSN  A  GKWD+V ELR ++K RG+ K  G S V    G+
Sbjct: 614 YYILLSNIYAVDGKWDNVAELRTRIKERGLKKMFGQSMVEVRGGV 658



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/374 (29%), Positives = 193/374 (51%), Gaps = 27/374 (7%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++H+ + KTG+  +T  + KL  L+ KC +L+ A ++FDE P   +  +N  +  Y +  
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81

Query: 126 QVEESLSLVRKLV-SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD-VK 183
           Q EE+L L   ++ ++GE PD +T  + LKA    R        LG+++H    K D + 
Sbjct: 82  QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRM-----LELGKVIHGFAKKNDEIG 136

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +D  + +ALV+ Y K G+   A  VF+     + +  TSM++G+      E+A  +F + 
Sbjct: 137 SDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQM 196

Query: 244 VEKDIVVYNAMIEGYSIS----IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           V  D VV + +     +S    +   +    VH  +I+  F  D+ L ++L+++YAK G 
Sbjct: 197 VMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGC 256

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
              A  +F  M +K+V +W++MI  Y  N   N+AL LF  M E   +PN VT + AL A
Sbjct: 257 EKIAANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQA 316

Query: 360 CGHAGLVDKGREI-----FESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
           C  +  +++G++I     ++  E D+S+         ++D+  +    ++A+     +P+
Sbjct: 317 CAVSRNLEEGKKIHKIAVWKGFELDFSVS------TALIDMYMKCSCPDEAVDLFQRLPK 370

Query: 415 KPNSDV--WAALLS 426
           K   DV  W ALLS
Sbjct: 371 K---DVVSWVALLS 381



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/299 (28%), Positives = 145/299 (48%), Gaps = 10/299 (3%)

Query: 171  RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
            +  HA+I    ++ D  + T     YV   +   A IVF+ +          MI GF + 
Sbjct: 737  KKTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATD 796

Query: 231  GFVEDAEEIFRKTVEK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
            G    + E++ K +EK    D   +   ++  +  +   ++   +H  L+      D+ +
Sbjct: 797  GRFLSSLELYSKMMEKGLKPDKFAFPFALKSCA-GLSDLQRGKVIHQHLVCCGCSNDLFV 855

Query: 287  GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
             +ALVDMYAKCG I+ AR VFD M  +++ +WTSMI GY  NG  ++ L  F +M+   V
Sbjct: 856  DAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGV 915

Query: 347  QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
             PN V+ L  L ACG+ G + KG E F S       +  +     ++D+  + GSL+ A 
Sbjct: 916  IPNRVSILSVLLACGNLGALRKG-EWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLA- 973

Query: 407  KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465
            + + +     +   W+A+++S  +H     A    +++ K  A  RP ++V  +  L+A
Sbjct: 974  RCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVK--AGVRP-SHVTFTCVLSA 1029



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 70/285 (24%), Positives = 136/285 (47%), Gaps = 18/285 (6%)

Query: 47   SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
            + P AL+          G  IH H+   G   +  +   L+ ++ KCG ++ A  +FD++
Sbjct: 820  AFPFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKM 879

Query: 107  PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
              R L ++  MI+GY  NG   E+L     + SSG  P+  +   +L A      N+   
Sbjct: 880  AVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLAC----GNLGAL 935

Query: 167  RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
            R  G   H+ +++   + D ++ TA++D Y K G    AR +FD    K+++C ++MI+ 
Sbjct: 936  RK-GEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIAS 994

Query: 227  FMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSIS--IETARKALEVHCQLIKNVF 280
            +   G    A ++F + V+  +    V +  ++   S S  +E  +    ++ QL+   F
Sbjct: 995  YGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGK----MYFQLMTEEF 1050

Query: 281  FEDVKLG--SALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMI 322
                KL   + +VD+  + G++ +A  + ++M  + +   W S++
Sbjct: 1051 VIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIWGSLL 1095



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 86/297 (28%), Positives = 134/297 (45%), Gaps = 40/297 (13%)

Query: 168 NLGRMV---HAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
           N GR V   H+Q+ K  +  D    T L   Y K      AR VFD     NV    S +
Sbjct: 15  NNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTL 74

Query: 225 SGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKA------LE----VHCQ 274
             +  +   E+   +F       +++  A     + +I  A KA      LE    +H  
Sbjct: 75  RSYCREKQWEETLRLFH------LMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGF 128

Query: 275 LIKN-VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
             KN     D+ +GSALV++Y+KCG++ +A +VF+  Q+ +   WTSM+ GY +N +P +
Sbjct: 129 AKKNDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEE 188

Query: 334 ALELFC-MMQECCVQPNYVTFLGALSACGH-----AGLVDKGREIFESMERDYSMKPKME 387
           AL LF  M+   CV  + VT +  +SAC       AG    G  I    + D  +     
Sbjct: 189 ALALFSQMVMMDCVVLDPVTLVSVVSACAQLLNVKAGSCVHGLVIRREFDGDLPLVNS-- 246

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV--WAALLSSCRLHDDVEMANIAAN 442
               +++L  + G  + A     +MPEK   DV  W+ +++    + + E AN A N
Sbjct: 247 ----LLNLYAKTGCEKIAANLFSKMPEK---DVISWSTMIAC---YANNEAANEALN 293


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  264 bits (675), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 142/456 (31%), Positives = 259/456 (56%), Gaps = 15/456 (3%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           LT T   + ++   N     +  ++H  + K G   + NI   L++ + KC  +  A ++
Sbjct: 292 LTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSEIDDAFKL 351

Query: 103 FDELPQ-RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161
           F  +   + + ++  +I+GY++NG+ + +++L  ++   G RP+ +T+S IL A+     
Sbjct: 352 FCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILTANAAVSP 411

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
           +          +HA ++K + +    + TAL DSY K G  + A  +F+++ EK+++  +
Sbjct: 412 S---------QIHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWS 462

Query: 222 SMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIK 277
           +M+SG+   G +E A +IF    ++ VE +   +++++   +    +  +  + H   IK
Sbjct: 463 AMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQFHSCSIK 522

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
           + F   + + SALV MYAK G I+ A  VF     +++ +W SMI GY ++G   ++L++
Sbjct: 523 SGFSNALCVSSALVTMYAKRGNIESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKI 582

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
           F  M+   ++ + +TF+G +SAC HAGLV++G+  F+ M +DY + P MEHY+CMVDL  
Sbjct: 583 FEEMRSKNLELDGITFIGVISACTHAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYS 642

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457
           RAG LE+A+  + +MP    + +W  LL++CR+H +V++  +AA ++  L   D   AYV
Sbjct: 643 RAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHLNVQLGELAAEKLISLQPQD-SAAYV 701

Query: 458 ALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            LSN  A AG W    ++R+ M ++ V K+ G SW+
Sbjct: 702 LLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWI 737



 Score =  152 bits (383), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 201/379 (53%), Gaps = 17/379 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H    K G   + ++   L+ +++K  +++   ++FDE+  + + ++  ++AGY +
Sbjct: 111 GKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQ 170

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  E++L L  ++   G +P+ +TF+ +L       ++  + +  G  VH  ++K  + 
Sbjct: 171 NGLNEQALKLFSQMQLEGIKPNPFTFAAVLGG---LAADGAVEK--GVQVHTMVIKSGLD 225

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +   +  ++V+ Y K    S A+ VFD M  +N +   SMI+GF++ G   +A E+F + 
Sbjct: 226 STIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFYRM 285

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               V+    ++  +I+    +I+    A ++HCQ+IKN    D+ + +AL+  Y+KC +
Sbjct: 286 RLEGVKLTQTIFATVIK-LCANIKEMSFAKQLHCQVIKNGSDFDLNIKTALMVAYSKCSE 344

Query: 300 IDDARRVFDHMQQ-KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           IDDA ++F  M   +NV +WT++I GY +NG  ++A+ LFC M+   V+PN+ T+   L+
Sbjct: 345 IDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTILT 404

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           A      V   +     ++ +Y   P +     + D   + G   +A K + E+ ++ + 
Sbjct: 405 A---NAAVSPSQIHALVVKTNYENSPSVG--TALSDSYSKIGDANEAAK-IFELIDEKDI 458

Query: 419 DVWAALLSSCRLHDDVEMA 437
             W+A+LS      D+E A
Sbjct: 459 VAWSAMLSGYAQMGDIEGA 477



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 167/336 (49%), Gaps = 17/336 (5%)

Query: 98  YAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           ++ Q+FDE PQ+ LS  N+++  + +N Q +E+L+L   L  SG   DG + S +LK   
Sbjct: 44  HSQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCG 103

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
           C        R +G+ VH Q +KC    D  + T+LVD Y+K         VFD M  KNV
Sbjct: 104 CL-----FDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNV 158

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHC 273
           +  TS+++G+   G  E A ++F +     ++ +   + A++ G +       K ++VH 
Sbjct: 159 VSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAAD-GAVEKGVQVHT 217

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
            +IK+     + +G+++V+MY+K   + DA+ VFD M+ +N  +W SMI G+  NG   +
Sbjct: 218 MVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLE 277

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER---DYSMKPKMEHYA 390
           A ELF  M+   V+     F   +  C +   +   +++   + +   D+ +  K    A
Sbjct: 278 AFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDFDLNIKT---A 334

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
            MV    +   ++ A K    M    N   W A++S
Sbjct: 335 LMV-AYSKCSEIDDAFKLFCMMHGVQNVVSWTAIIS 369


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  264 bits (675), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 141/442 (31%), Positives = 256/442 (57%), Gaps = 23/442 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA+I K+       I   +++++ +CG++  + ++F  + +R +  +N M++ +++
Sbjct: 341 GRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQ 400

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  +E L LV  +   G   D  T + +L  ++  RS     + +G+  HA +++  ++
Sbjct: 401 NGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRS-----QEIGKQAHAYLIRHGIQ 455

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMM--LEKNVICSTSMISGFMSQGFVEDAEEIFR 241
            +  + + L+D Y K G  + A+ +F+     +++     +MI+G+   G  E+   +FR
Sbjct: 456 FEG-MDSYLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFR 514

Query: 242 KTVEKDI----VVYNAMIEGY----SISIETARKALEVHCQLIKNVFFEDVKLGSALVDM 293
           K +E+++    V   +++       +I +        + C L +NVF     +G+AL+DM
Sbjct: 515 KMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNRNVF-----VGTALLDM 569

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           Y+K G I  A  VF    +KN  T+T+MI  YG++G   +AL LF  M    ++P+ VTF
Sbjct: 570 YSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAMLGSGIKPDSVTF 629

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           +  LSAC +AGLVD+G  IF+SMER+Y ++P  EHY C+ D+LGR G + +A +FV  + 
Sbjct: 630 VAILSACSYAGLVDEGLRIFQSMEREYKIQPSAEHYCCVADMLGRVGRVVEAYEFVKGLG 689

Query: 414 EKPNS-DVWAALLSSCRLHDDVEMANIAANEIFKLN-ANDRPGAYVALSNTLAAAGKWDS 471
           E+ N+  +W +LL +CR+H + E+  + AN++ ++   +   G +V LSN  AA G WD+
Sbjct: 690 EEGNTFGIWGSLLGACRIHGEFELGKVVANKLLEMEKGSSLTGYHVLLSNIYAAEGNWDN 749

Query: 472 VTELREKMKLRGVLKDTGCSWV 493
           V  +R++M+ +G++K+ GCSWV
Sbjct: 750 VDRVRKEMRQKGLMKEAGCSWV 771



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 191/402 (47%), Gaps = 18/402 (4%)

Query: 87  LILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERP-D 145
           + ++ + G + +A ++FD   +R    +N MI GY++N    E++ L  +++ S +   D
Sbjct: 262 IFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLD 321

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
             TF   L A +  +        LGR +HA ILK       V+  A++  Y + G    +
Sbjct: 322 DVTFLSALTAISQLQW-----LELGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTS 376

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETA 265
             VF  MLE++V+   +M+S F+  G ++D   +    ++K   + +++     +S+ + 
Sbjct: 377 FKVFSNMLERDVVTWNTMVSAFVQNG-LDDEGLMLVFAMQKQGFMVDSVTLTALLSLASN 435

Query: 266 RKALEV----HCQLIKN-VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ--QKNVFTW 318
            ++ E+    H  LI++ + FE   + S L+DMYAK G I  A+++F+      ++  TW
Sbjct: 436 LRSQEIGKQAHAYLIRHGIQFEG--MDSYLIDMYAKSGLITTAQQLFEKNSDYDRDEATW 493

Query: 319 TSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER 378
            +MI GY +NG   +   +F  M E  V+PN VT    L AC   G +  G++I     R
Sbjct: 494 NAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIR 553

Query: 379 DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMAN 438
            +  +      A ++D+  ++G++  A     E  EK NS  +  ++SS   H   E A 
Sbjct: 554 CFLNRNVFVGTA-LLDMYSKSGAITYAENVFAETLEK-NSVTYTTMISSYGQHGMGERAL 611

Query: 439 IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
              + +           +VA+ +  + AG  D    + + M+
Sbjct: 612 SLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSME 653



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/349 (26%), Positives = 164/349 (46%), Gaps = 27/349 (7%)

Query: 99  AGQMFDELPQRTLSAYNYMIAGYLKNGQ-VEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           A  +FD +P+ T   +N +I G++ N   ++  L   R   S   + D YTFS  LKA  
Sbjct: 56  ALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACA 115

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY------VKGGKTSY------- 204
             RS       LG+ +H  +L+    +  ++Y +L++ Y      V    T+Y       
Sbjct: 116 QARS-----LKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDL 170

Query: 205 ARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI-----VVYNAMIEGYS 259
            R VFD M ++NV+   +MIS ++    + +A ++FR  +   I        N     + 
Sbjct: 171 VRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWR 230

Query: 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWT 319
           +S       L      + + F +D  + S+ + MYA+ G +D AR +FD   ++N   W 
Sbjct: 231 MSDYDNANVLYGLVVKLGSDFVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWN 290

Query: 320 SMIDGYGKNGNPNQALELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER 378
           +MI GY +N  P +A++LF  +M+      + VTFL AL+A      ++ GR++   + +
Sbjct: 291 TMIGGYVQNNCPIEAIDLFVQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLHAYILK 350

Query: 379 DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
             ++   +   A +V +  R GS+  + K    M E+ +   W  ++S+
Sbjct: 351 SSTILQVVILNAIIV-MYSRCGSIGTSFKVFSNMLER-DVVTWNTMVSA 397


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  264 bits (675), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 140/437 (32%), Positives = 254/437 (58%), Gaps = 20/437 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++H +  K     N  ++   +  + KCG+L YA ++F  +  +T++++N +I G+ ++ 
Sbjct: 166 ELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSN 225

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
               SL    ++  SG  PD +T   +L A +  +S       LG+ VH  I++  ++ D
Sbjct: 226 DPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKS-----LRLGKEVHGFIIRNWLERD 280

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             +Y +++  Y+  G+    + +FD M +K+++   ++I+G++  GF + A  +FR+   
Sbjct: 281 LFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQ--- 337

Query: 246 KDIVVYNAMIEGYSIS--------IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
             +V+Y   + G S+         + + R   E H   +K++  +D  +  +L+DMYAK 
Sbjct: 338 --MVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKN 395

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G I  + +VF+ +++K+  +W +MI GYG +G   +A++LF  MQ     P+ +TFLG L
Sbjct: 396 GSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVL 455

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL-EMPEKP 416
           +AC H+GL+ +G    + M+  + +KP ++HYAC++D+LGRAG L++AL+ V  EM E+ 
Sbjct: 456 TACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEA 515

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
           +  +W +LLSSCR+H ++EM    A ++F+L   ++P  YV LSN  A  GKW+ V ++R
Sbjct: 516 DVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEP-EKPENYVLLSNLYAGLGKWEDVRKVR 574

Query: 477 EKMKLRGVLKDTGCSWV 493
           ++M    + KD GCSW+
Sbjct: 575 QRMNEMSLRKDAGCSWI 591



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/283 (27%), Positives = 139/283 (49%), Gaps = 18/283 (6%)

Query: 109 RTLSAYNYMIAGYLKNGQVEESLSLVRKLVS-SGE---RPDGYTFSMILKASTCCRSNVP 164
           R   ++N MI  +  NG  EES  L+ +++  +G+    PD  T   +L    C R    
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVL--PVCARER-- 56

Query: 165 LPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
               LG+ VH   +K  +  + VL  AL+D Y K G  + A+++F M   KNV+   +M+
Sbjct: 57  -EIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMV 115

Query: 225 SGFMSQGFVEDAEEIFRKTV-------EKDIVVYNAMIEGYSISIETARKALEVHCQLIK 277
            GF ++G      ++ R+ +         ++ + NA+   +  S   + K  E+HC  +K
Sbjct: 116 GGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLK--ELHCYSLK 173

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
             F  +  + +A V  YAKCG +  A+RVF  ++ K V +W ++I G+ ++ +P  +L+ 
Sbjct: 174 QEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDA 233

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
              M+   + P+  T    LSAC     +  G+E+   + R++
Sbjct: 234 HLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNW 276



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 92/378 (24%), Positives = 176/378 (46%), Gaps = 22/378 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H    K  +     ++  L+ ++ KCG +  A  +F     + + ++N M+ G+  
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 124 NGQVEESLSLVRKLVSSGE--RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            G    +  ++R++++ GE  + D  T   IL A   C     LP    + +H   LK +
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVT---ILNAVPVCFHESFLPSL--KELHCYSLKQE 175

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG---FVEDAE- 237
              ++++  A V SY K G  SYA+ VF  +  K V    ++I G           DA  
Sbjct: 176 FVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHL 235

Query: 238 EIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           ++    +  D     +++   S  +++ R   EVH  +I+N    D+ +  +++ +Y  C
Sbjct: 236 QMKISGLLPDSFTVCSLLSACS-KLKSLRLGKEVHGFIIRNWLERDLFVYLSVLSLYIHC 294

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G++   + +FD M+ K++ +W ++I GY +NG P++AL +F  M    +Q   ++ +   
Sbjct: 295 GELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVF 354

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKME---HYAC-MVDLLGRAGSLEQALKFVLEMP 413
            AC     +  GRE        Y++K  +E     AC ++D+  + GS+ Q+ K    + 
Sbjct: 355 GACSLLPSLRLGRE-----AHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLK 409

Query: 414 EKPNSDVWAALLSSCRLH 431
           EK  +  W A++    +H
Sbjct: 410 EKSTAS-WNAMIMGYGIH 426



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 70/268 (26%), Positives = 136/268 (50%), Gaps = 17/268 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H  I +  ++ +  + + +L L++ CG L     +FD +  ++L ++N +I GYL+
Sbjct: 265 GKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQ 324

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  + +L + R++V  G +  G   SM+     C  S +P  R LGR  HA  LK  ++
Sbjct: 325 NGFPDRALGVFRQMVLYGIQLCG--ISMMPVFGAC--SLLPSLR-LGREAHAYALKHLLE 379

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEI 239
            D  +  +L+D Y K G  + +  VF+ + EK+     +MI G+   G  ++A    EE+
Sbjct: 380 DDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEM 439

Query: 240 FRKTVEKDIVVYNAMIEG--YSISIETARKALEVHCQLIKNVFFE-DVKLGSALVDMYAK 296
            R     D + +  ++    +S  I    + L+   Q+  +   + ++K  + ++DM  +
Sbjct: 440 QRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLD---QMKSSFGLKPNLKHYACVIDMLGR 496

Query: 297 CGKIDDARRVF--DHMQQKNVFTWTSMI 322
            G++D A RV   +  ++ +V  W S++
Sbjct: 497 AGQLDKALRVVAEEMSEEADVGIWKSLL 524



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 95/186 (51%), Gaps = 10/186 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G + HA+  K  ++ +  I+  L+ ++ K G++  + ++F+ L +++ +++N MI GY  
Sbjct: 366 GREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGI 425

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP--RNLGRMVHAQILKCD 181
           +G  +E++ L  ++  +G  PD  TF  +L A  C  S +     R L +M  +  LK +
Sbjct: 426 HGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTA--CNHSGLIHEGLRYLDQMKSSFGLKPN 483

Query: 182 VKADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEK-NVICSTSMISGFMSQGFVEDAEEI 239
           +K     Y  ++D   + G+   A R+V + M E+ +V    S++S       +E  E++
Sbjct: 484 LKH----YACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKV 539

Query: 240 FRKTVE 245
             K  E
Sbjct: 540 AAKLFE 545


>gi|449459276|ref|XP_004147372.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Cucumis sativus]
          Length = 502

 Score =  264 bits (675), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 152/438 (34%), Positives = 240/438 (54%), Gaps = 30/438 (6%)

Query: 68  HAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV 127
           HA I   G  P+  +   LL+++ KCG L  A  +FD++  R + ++N +IA Y+ N   
Sbjct: 30  HAQILIHGFLPHLTLLTDLLLVYCKCGFLHDARNVFDKMAHRNMHSWNILIASYVHNSFY 89

Query: 128 EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV 187
            ++L++  +    G  PD YT   + KAS            LG+ +H   +K       V
Sbjct: 90  FDALNVFNEFRHLGFLPDHYTLPQMFKASVGIGDAY-----LGKRLHCWTIKLGFVGYVV 144

Query: 188 LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKD 247
           + + ++D Y K G    AR VFD M+ K+ +   SMISG+   G   DA + F++     
Sbjct: 145 VGSTVLDFYAKCGIVGDARKVFDDMIFKDTVSWNSMISGYGRAGVYMDALDCFKRM---- 200

Query: 248 IVVYNAMIEGYSISIETA-------------RKALEVHCQLIKN-VFFEDVKLGSALVDM 293
                 ++EG ++   T              RK  E+HC ++K+ VF  DV +G++L+DM
Sbjct: 201 ------LLEGANMDFMTIPSVLNACGGEGDLRKGKEIHCLVLKSPVFAADVAVGNSLIDM 254

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           Y+KCG + ++ +VF +M + N+ TWT+MI  YG +G   ++L LF  M++C +QPN VT 
Sbjct: 255 YSKCGSLLNSEKVFWNMSRLNIVTWTTMISCYGAHGKGEKSLVLFNKMKDCGIQPNSVTL 314

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
              L++C HAG +++G  IF+S+  D  ++P +EHYAC VDLL R G L++A   +  M 
Sbjct: 315 TAILASCSHAGYINEGWRIFQSIISDNKVEPTVEHYACAVDLLSRFGFLKEAFLLIRNMK 374

Query: 414 EKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473
            K  + +W ALLS C +H ++E   IAAN++FKL   + P  ++AL +   + G    V+
Sbjct: 375 VKAAASIWGALLSGCMIHRNLEFGEIAANQLFKLEPTN-PSNFIALISIYESLGMTHGVS 433

Query: 474 ELREKMKLRGVLKDTGCS 491
             REKM+  G+ K  GCS
Sbjct: 434 LTREKMRDLGLTKVPGCS 451



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 93/197 (47%), Gaps = 6/197 (3%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +LP   +  +     + G ++H    K G      +   +L  + KCG +  A ++FD++
Sbjct: 110 TLPQMFKASVGIGDAYLGKRLHCWTIKLGFVGYVVVGSTVLDFYAKCGIVGDARKVFDDM 169

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
             +   ++N MI+GY + G   ++L   ++++  G   D  T   +L A   C     L 
Sbjct: 170 IFKDTVSWNSMISGYGRAGVYMDALDCFKRMLLEGANMDFMTIPSVLNA---CGGEGDLR 226

Query: 167 RNLGRMVHAQILKCDVKADDV-LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
           +  G+ +H  +LK  V A DV +  +L+D Y K G    +  VF  M   N++  T+MIS
Sbjct: 227 K--GKEIHCLVLKSPVFAADVAVGNSLIDMYSKCGSLLNSEKVFWNMSRLNIVTWTTMIS 284

Query: 226 GFMSQGFVEDAEEIFRK 242
            + + G  E +  +F K
Sbjct: 285 CYGAHGKGEKSLVLFNK 301



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 45/87 (51%)

Query: 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
           +A + H Q++ + F   + L + L+ +Y KCG + DAR VFD M  +N+ +W  +I  Y 
Sbjct: 25  QAKQAHAQILIHGFLPHLTLLTDLLLVYCKCGFLHDARNVFDKMAHRNMHSWNILIASYV 84

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTF 353
            N     AL +F   +     P++ T 
Sbjct: 85  HNSFYFDALNVFNEFRHLGFLPDHYTL 111


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  264 bits (675), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 146/451 (32%), Positives = 253/451 (56%), Gaps = 10/451 (2%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +  + L   I  D   +G ++H+ + K     N  ++  LL  + K   +  A ++F E+
Sbjct: 242 TFAAVLTAGIQMDDIEFGQQVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEM 301

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P+    +YN +I     NG+VEESL L R+L  +      + F+ +L  +        L 
Sbjct: 302 PEVDGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAAN-----SLN 356

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
             +GR +H+Q +  D  ++ ++  +LVD Y K  K   A  +F  +  ++ +  T++ISG
Sbjct: 357 LEMGRQIHSQAIVTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISG 416

Query: 227 FMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
           ++ +G  ED  ++F    R  +  D   Y +++   + ++ +     ++H ++I++    
Sbjct: 417 YVQKGLHEDGLKLFVEMHRAKIGADSATYASILRACA-NLASLTLGKQLHSRIIRSGCLS 475

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           +V  GSALVDMYAKCG I +A ++F  M  +N  +W ++I  Y +NG+   AL  F  M 
Sbjct: 476 NVFSGSALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMI 535

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
              +QPN V+FL  L AC H GLV++G + F SM + Y ++P+ EHYA MVD+L R+G  
Sbjct: 536 HSGLQPNSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRF 595

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
           ++A K +  MP +P+  +W+++L+SCR+H + E+A  AA+++F +        YV++SN 
Sbjct: 596 DEAEKLMARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNI 655

Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            AAAG+WDSV ++++ ++ RG+ K    SWV
Sbjct: 656 YAAAGEWDSVGKVKKALRERGIRKVPAYSWV 686



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 180/368 (48%), Gaps = 16/368 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++H H+ K G      +   LL  + K  +L  A  +F  + ++    +N ++ GY K G
Sbjct: 160 QVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMAEKDNVTFNALLTGYSKEG 219

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              ++++L  K+   G RP  +TF+ +L A              G+ VH+ ++KC+   +
Sbjct: 220 FNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDD-----IEFGQQVHSFVVKCNFVWN 274

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK--- 242
             +  AL+D Y K  +   AR +F  M E + I    +I+     G VE++ E+FR+   
Sbjct: 275 VFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNGRVEESLELFRELQF 334

Query: 243 -TVEKDIVVYNAM--IEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
              ++    +  +  I   S+++E  R   ++H Q I      +V +G++LVDMYAKC K
Sbjct: 335 TRFDRRQFPFATLLSIAANSLNLEMGR---QIHSQAIVTDAISEVLVGNSLVDMYAKCDK 391

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
             +A R+F  +  ++   WT++I GY + G     L+LF  M    +  +  T+   L A
Sbjct: 392 FGEANRIFADLAHQSSVPWTALISGYVQKGLHEDGLKLFVEMHRAKIGADSATYASILRA 451

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C +   +  G+++   + R   +       A +VD+  + GS+++AL+   EMP + NS 
Sbjct: 452 CANLASLTLGKQLHSRIIRSGCLSNVFSGSA-LVDMYAKCGSIKEALQMFQEMPVR-NSV 509

Query: 420 VWAALLSS 427
            W AL+S+
Sbjct: 510 SWNALISA 517



 Score =  101 bits (252), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 181/407 (44%), Gaps = 50/407 (12%)

Query: 67  IHAHITKTGVKPNT---NISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           + A + KTG  PNT   N  ++    HL+ G L  A ++FDE+P + + + N MI GYLK
Sbjct: 29  VDASMIKTGFDPNTCRFNFQVQT---HLQRGDLGAARKLFDEMPHKNVISTNTMIMGYLK 85

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMI---------------LKASTCCRSNVPLPRN 168
           +G    +LS  R L  S  +    T++M+               L A  C    VP    
Sbjct: 86  SG----NLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHIT 141

Query: 169 LGRM---------------VHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
           L  +               VH  ++K    +  ++  +L+DSY K      A  +F  M 
Sbjct: 142 LATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMA 201

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKAL 269
           EK+ +   ++++G+  +GF  DA  +F K  +         + A++    I ++      
Sbjct: 202 EKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTA-GIQMDDIEFGQ 260

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
           +VH  ++K  F  +V + +AL+D Y+K  +I +AR++F  M + +  ++  +I     NG
Sbjct: 261 QVHSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPEVDGISYNVLITCCAWNG 320

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
              ++LELF  +Q          F   LS   ++  ++ GR+I        ++   +   
Sbjct: 321 RVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIHSQAIVTDAISEVLVGN 380

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC---RLHDD 433
           + +VD+  +     +A +   ++  + +S  W AL+S      LH+D
Sbjct: 381 S-LVDMYAKCDKFGEANRIFADLAHQ-SSVPWTALISGYVQKGLHED 425



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 132/304 (43%), Gaps = 36/304 (11%)

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
           P+   + V A ++K     +   +   V ++++ G    AR +FD M  KNVI + +MI 
Sbjct: 22  PKRHFQHVDASMIKTGFDPNTCRFNFQVQTHLQRGDLGAARKLFDEMPHKNVISTNTMIM 81

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS-------------------------- 259
           G++  G +  A  +F   V++ +V +  +I GY+                          
Sbjct: 82  GYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFADMCRHGMVPDHIT 141

Query: 260 --------ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311
                      E+  +  +VH  ++K  +   + + ++L+D Y K   +  A  +F HM 
Sbjct: 142 LATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTRSLGLACHLFKHMA 201

Query: 312 QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371
           +K+  T+ +++ GY K G  + A+ LF  MQ+   +P+  TF   L+A      ++ G++
Sbjct: 202 EKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVLTAGIQMDDIEFGQQ 261

Query: 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           +  S     +    +     ++D   +   + +A K   EMPE  +   +  L++ C  +
Sbjct: 262 V-HSFVVKCNFVWNVFVANALLDFYSKHDRIVEARKLFYEMPE-VDGISYNVLITCCAWN 319

Query: 432 DDVE 435
             VE
Sbjct: 320 GRVE 323


>gi|345505206|gb|AEN99827.1| chlororespiratory reduction 4, partial [Aethionema grandiflorum]
          Length = 594

 Score =  264 bits (674), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 148/473 (31%), Positives = 247/473 (52%), Gaps = 62/473 (13%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH  + KTG+  +  +   L+ L+LKCG L +A Q+FD +PQR   +YN MI GY+K
Sbjct: 120 GMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVK 179

Query: 124 NGQVEESLSL-------VRKLVSSGERPDGYTFSMI-LKASTCCRSNVPLPRNLGRMVHA 175
            G ++ +  L       ++ L+S      GY  +   L  ++   S +P           
Sbjct: 180 CGLMKSAHKLFDLMPREIKNLISWNSMISGYAQTADGLNTASKLFSEMP----------- 228

Query: 176 QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
                  + D + + ++++  VK G+   A+ +FD+M  ++V+   +MI G+   GFV  
Sbjct: 229 -------EKDLISWNSMINGCVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHH 281

Query: 236 AEEIFRKTVEKDIVVYNAMIEGY---------------------------------SISI 262
           A+ +F +  ++D+V  N+M+ GY                                 S   
Sbjct: 282 AKSLFDQMHQRDVVACNSMMAGYVQNKYHMEALEIFNDMEKDSHLSPDETTLVIVLSAIA 341

Query: 263 ETAR--KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
           +  R  KA+ +H  +++  F    KLG AL+DM++KCG I  A  VF+ ++ K++  W +
Sbjct: 342 QLGRLSKAMSMHVYIVEKRFPLGGKLGVALIDMHSKCGSIQHAISVFEGIENKSIDHWNA 401

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
           MI G   +G    A ++   ++ C +QP+ +TF+G L+AC H+GLV +G   FE M R +
Sbjct: 402 MIGGLAIHGLGELAFDMLMQIERCSIQPDXITFIGVLNACSHSGLVKEGLLCFELMRRKH 461

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIA 440
            ++P+++HY C+VD+L R+GS+E A   + +MP +PN  +W + LS+C  H++ E   + 
Sbjct: 462 XIEPRLQHYGCLVDVLSRSGSIELAKHLIEDMPMEPNDVIWRSFLSACSTHEEFETGELV 521

Query: 441 ANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           A  +  L A   P +YV LSN  A+ G W  V  +R  MK R + K  GCSW+
Sbjct: 522 AKHLI-LQAGYNPSSYVLLSNMYASLGMWKDVRRVRMMMKQRKLHKIPGCSWI 573



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 175/363 (48%), Gaps = 26/363 (7%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHL---KCGALKYAGQMFDELPQRTLSA--------Y 114
           K+HA +  TG+  N N++ ++++  +   +    ++A  +F E    + SA        +
Sbjct: 10  KMHARLITTGLIKNPNLTTRIVLAFVASRRSYLAEFARCVFYEYYLCSFSAGEGEDPYLW 69

Query: 115 NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH 174
           N +I  Y        +L L   ++ +G   D ++ S++LKA  C R         G  +H
Sbjct: 70  NAVIKSYSHGIDPRRALLLFCLMIENGVCVDKFSLSLVLKA--CSRLEF---LKEGMQIH 124

Query: 175 AQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVE 234
             + K  + +D  L   L+  Y+K G   +AR VFD M +++ +   SMI G++  G ++
Sbjct: 125 GFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVKCGLMK 184

Query: 235 DAEEIFRKTVE--KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVD 292
            A ++F       K+++ +N+MI GY+   +TA   L    +L   +  +D+   +++++
Sbjct: 185 SAHKLFDLMPREIKNLISWNSMISGYA---QTA-DGLNTASKLFSEMPEKDLISWNSMIN 240

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
              K G+I+DA+ +FD M +++V TW +MIDGY K G  + A  LF  M +  V      
Sbjct: 241 GCVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHHAKSLFDQMHQRDVVACNSM 300

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
             G +    H     +  EIF  ME+D  + P       ++  + + G L +A+   + +
Sbjct: 301 MAGYVQNKYHM----EALEIFNDMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMHVYI 356

Query: 413 PEK 415
            EK
Sbjct: 357 VEK 359


>gi|15235472|ref|NP_195434.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75097747|sp|O23169.1|PP353_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g37170
 gi|2464864|emb|CAB16758.1| putative protein [Arabidopsis thaliana]
 gi|7270666|emb|CAB80383.1| putative protein [Arabidopsis thaliana]
 gi|332661361|gb|AEE86761.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  264 bits (674), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 156/470 (33%), Positives = 253/470 (53%), Gaps = 51/470 (10%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMI----- 118
           G K+H HI  +G  P   I  +LL ++ KCG+L  A ++FDE+P R L ++N M+     
Sbjct: 104 GKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAE 163

Query: 119 --------------------------AGYLKNGQVEESL---SLVRKLVSSGERPDGYTF 149
                                      GY+K  Q EE+L   SL++++ +S  RP+ +T 
Sbjct: 164 VGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNS--RPNIFTV 221

Query: 150 SMILKAST---CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR 206
           S+ + A+    C R         G+ +H  I++  + +D+VL+++L+D Y K G    AR
Sbjct: 222 SIAVAAAAAVKCIRR--------GKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEAR 273

Query: 207 IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV---EKDIVVYNAMIEGYSISIE 263
            +FD ++EK+V+  TSMI  +       +   +F + V   E+      A +      + 
Sbjct: 274 NIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLT 333

Query: 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMID 323
           T     +VH  + +  F       S+LVDMY KCG I+ A+ V D   + ++ +WTS+I 
Sbjct: 334 TEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIG 393

Query: 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK 383
           G  +NG P++AL+ F ++ +   +P++VTF+  LSAC HAGLV+KG E F S+   + + 
Sbjct: 394 GCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLS 453

Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANE 443
              +HY C+VDLL R+G  EQ    + EMP KP+  +WA++L  C  + ++++A  AA E
Sbjct: 454 HTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQE 513

Query: 444 IFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           +FK+   + P  YV ++N  AAAGKW+   ++R++M+  GV K  G SW 
Sbjct: 514 LFKIEPEN-PVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWT 562



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 90/328 (27%), Positives = 153/328 (46%), Gaps = 42/328 (12%)

Query: 136 KLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDS 195
           +L+   ++P   T+  +++  +  R+        G+ VH  I         V++  L+  
Sbjct: 75  QLLGRAKKPPASTYCNLIQVCSQTRA-----LEEGKKVHEHIRTSGFVPGIVIWNRLLRM 129

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMI 255
           Y K G    AR VFD M  +++     M++G+   G +E+A ++F +  EKD   + AM+
Sbjct: 130 YAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMV 189

Query: 256 EGY---------------------------SISI--------ETARKALEVHCQLIKNVF 280
            GY                           ++SI        +  R+  E+H  +++   
Sbjct: 190 TGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGL 249

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             D  L S+L+DMY KCG ID+AR +FD + +K+V +WTSMID Y K+    +   LF  
Sbjct: 250 DSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSE 309

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           +   C +PN  TF G L+AC      + G+++   M R     P     + +VD+  + G
Sbjct: 310 LVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTR-VGFDPYSFASSSLVDMYTKCG 368

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSC 428
           ++E A K V++   KP+   W +L+  C
Sbjct: 369 NIESA-KHVVDGCPKPDLVSWTSLIGGC 395


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  264 bits (674), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 145/426 (34%), Positives = 246/426 (57%), Gaps = 15/426 (3%)

Query: 73  KTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ-RTLSAYNYMIAGYLKNGQVEESL 131
           K+G   +  +   L++   KC  +  A  +F  + + + + ++  MI+G L+NG  ++++
Sbjct: 323 KSGFTTDQIVITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAV 382

Query: 132 SLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTA 191
           +L  ++   G +P+ +T+S IL         V  P  +  M HA+++K + +    + TA
Sbjct: 383 NLFSQMRREGVKPNHFTYSAIL--------TVHYPVFVSEM-HAEVIKTNYERSSSVGTA 433

Query: 192 LVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI--- 248
           L+D+YVK G T  A  VF+++  K+++  ++M++G+   G  E+A ++F + +++ I   
Sbjct: 434 LLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPN 493

Query: 249 -VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVF 307
              ++++I   +     A +  + H   IK      + + SALV MYAK G ID A  VF
Sbjct: 494 EFTFSSVINACASPTAAAEQGKQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVF 553

Query: 308 DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367
              +++++ +W SMI GY ++G   +ALE+F  MQ+  +  + VTF+G ++AC HAGLV+
Sbjct: 554 KRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIGVITACTHAGLVE 613

Query: 368 KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
           KG++ F SM  D+ + P M+HY+CM+DL  RAG LE+A+  + EMP  P + VW  LL +
Sbjct: 614 KGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFPPGATVWRTLLGA 673

Query: 428 CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487
            R+H +VE+  +AA ++  L   D   AYV LSN  AAAG W   T +R+ M  R V K+
Sbjct: 674 ARVHRNVELGELAAEKLISLQPED-SAAYVLLSNMYAAAGNWQERTNVRKLMDKRKVKKE 732

Query: 488 TGCSWV 493
            G SW+
Sbjct: 733 PGYSWI 738



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 113/447 (25%), Positives = 222/447 (49%), Gaps = 31/447 (6%)

Query: 32  KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHL 91
           ++Q    L N  T +++ +AL   +N      GL++HA + K G +    +   L+ L+ 
Sbjct: 184 QMQYEGVLPNRYTVSTVIAAL---VNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYS 240

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           + G L+ A  +FD++  R    +N MIAGY++NGQ  E   +  K+  +G +P   TF+ 
Sbjct: 241 RLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFAS 300

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           ++K+    R        L +++  + LK     D ++ TAL+ +  K  +   A  +F +
Sbjct: 301 VIKSCASLRE-----LALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSLFSL 355

Query: 212 MLE-KNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIE-GYSISIETA 265
           M E KNV+  T+MISG +  G  + A  +F    R+ V+ +   Y+A++   Y + +   
Sbjct: 356 MEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPVFVS-- 413

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
               E+H ++IK  +     +G+AL+D Y K G   DA +VF+ ++ K++  W++M+ GY
Sbjct: 414 ----EMHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGY 469

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH-AGLVDKGREIFESMERDYSMKP 384
            + G   +A +LF  + +  ++PN  TF   ++AC       ++G++        Y++K 
Sbjct: 470 AQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQF-----HAYAIKM 524

Query: 385 KMEHYAC----MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIA 440
           ++ +  C    +V +  + G+++ A + V +  ++ +   W +++S    H   + A   
Sbjct: 525 RLNNALCVSSALVTMYAKRGNIDSAHE-VFKRQKERDLVSWNSMISGYSQHGQAKKALEV 583

Query: 441 ANEIFKLNANDRPGAYVALSNTLAAAG 467
            +E+ K N +     ++ +      AG
Sbjct: 584 FDEMQKRNMDVDAVTFIGVITACTHAG 610



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 102/343 (29%), Positives = 168/343 (48%), Gaps = 27/343 (7%)

Query: 99  AGQMFDELPQR--TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAS 156
           A  +FD++P R  TL  +N ++  Y ++ Q +E+L+L   L+ S  +PD  T S +   +
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVF--N 101

Query: 157 TCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216
            C  S   L   LGR VH Q +K  +     + T+LVD Y+K    +  R VFD M E+N
Sbjct: 102 ICAGS---LDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERN 158

Query: 217 VICSTSMISGFMSQGFVEDAEEIF-----------RKTVEKDIVVYNAMIEGYSISIETA 265
           V+  TS+++G+   G      E+F           R TV     V  A++    + I   
Sbjct: 159 VVSWTSLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVS---TVIAALVNEGVVGI--- 212

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
              L+VH  ++K+ F E + + ++L+ +Y++ G + DAR VFD M+ ++  TW SMI GY
Sbjct: 213 --GLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGY 270

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
            +NG   +  E+F  MQ   V+P ++TF   + +C     +   + +     +      +
Sbjct: 271 VRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQ 330

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
           +   A MV  L +   ++ AL     M E  N   W A++S C
Sbjct: 331 IVITALMV-ALSKCKEMDDALSLFSLMEEGKNVVSWTAMISGC 372



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 98/369 (26%), Positives = 185/369 (50%), Gaps = 19/369 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H    K G+  + ++   L+ +++K   +    ++FDE+ +R + ++  ++AGY  
Sbjct: 112 GRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSW 171

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG       L  ++   G  P+ YT S ++ A       V     +G  VHA ++K   +
Sbjct: 172 NGLYGYVWELFCQMQYEGVLPNRYTVSTVIAA--LVNEGVV---GIGLQVHAMVVKHGFE 226

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               ++ +L+  Y + G    AR VFD M  ++ +   SMI+G++  G   +  EIF K 
Sbjct: 227 EAIPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKM 286

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               V+   + + ++I+  +   E A   L + C+ +K+ F  D  + +AL+   +KC +
Sbjct: 287 QLAGVKPTHMTFASVIKSCASLRELALVKL-MQCKALKSGFTTDQIVITALMVALSKCKE 345

Query: 300 IDDARRVFDHMQQ-KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           +DDA  +F  M++ KNV +WT+MI G  +NG  +QA+ LF  M+   V+PN+ T+   L+
Sbjct: 346 MDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILT 405

Query: 359 ACGHAGLVDKGREIFES-MERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
                 + +   E+ ++  ER  S+         ++D   + G+   A+K V E+ E  +
Sbjct: 406 VHYPVFVSEMHAEVIKTNYERSSSVG------TALLDAYVKLGNTIDAVK-VFEIIEAKD 458

Query: 418 SDVWAALLS 426
              W+A+L+
Sbjct: 459 LMAWSAMLA 467



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 91/171 (53%), Gaps = 3/171 (1%)

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
           +VHCQ +K    + V +G++LVDMY K   ++D RRVFD M ++NV +WTS++ GY  NG
Sbjct: 114 QVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAGYSWNG 173

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
                 ELFC MQ   V PN  T    ++A  + G+V  G ++  +M   +  +  +  +
Sbjct: 174 LYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQV-HAMVVKHGFEEAIPVF 232

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS-CRLHDDVEMANI 439
             ++ L  R G L  A + V +  E  +   W ++++   R   D+E+  I
Sbjct: 233 NSLISLYSRLGMLRDA-RDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEI 282


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  264 bits (674), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 144/442 (32%), Positives = 242/442 (54%), Gaps = 10/442 (2%)

Query: 56  INSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYN 115
           + S+   +G +IH    KT    +  ++  LL  + K   +  A  +FDE+P+    +YN
Sbjct: 255 VGSEDVIFGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYN 314

Query: 116 YMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA 175
            +I GY  NGQ E+S  L ++L  +      + F+ +L  +      + L  ++GR  HA
Sbjct: 315 IIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAA-----IELNLSMGRQTHA 369

Query: 176 QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
           Q +     ++  +  ALVD Y K  K   A  +F  +  +N +  T++IS ++ +GF E+
Sbjct: 370 QAVVTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEE 429

Query: 236 AEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALV 291
           A ++F    R+ V  D   + + ++  S ++ +     ++H  +I+      V  GS LV
Sbjct: 430 ALKMFKEMNRENVHGDQATFASTLKA-SANLASVSLGKQLHSSVIRLGLLSSVFSGSVLV 488

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
           DMYA CG + DA  VF  M  +N+  W ++I  Y +NG+       F  M E  + P+ V
Sbjct: 489 DMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSV 548

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
           +FL  L+AC H GLV+K    F SM + Y + P+ +HYA M+D+L R+G   +A   + E
Sbjct: 549 SFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLISE 608

Query: 412 MPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471
           MP +P+  +W+++L+SCR+H + ++A  AA+++FK++A     AYV +SN  A AGKW++
Sbjct: 609 MPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKWEN 668

Query: 472 VTELREKMKLRGVLKDTGCSWV 493
             ++++ M+ RGV K T  SWV
Sbjct: 669 AAKVKKAMRERGVKKVTAYSWV 690



 Score =  158 bits (399), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 187/375 (49%), Gaps = 12/375 (3%)

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           L+IH+HI + G   +  +   L+  + K   L  A Q+F E+P +   ++N MI GY K 
Sbjct: 163 LQIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFSEMPTKDSVSFNVMITGYTKY 222

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
           G  EE+L L  ++ +   +P G+TF+ +L  S      +      G+ +H   +K     
Sbjct: 223 GFREEALKLFMQMRNMDFQPSGFTFAAMLGMSVGSEDVI-----FGQQIHGLAIKTSYVW 277

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK-- 242
           D  +  AL+D Y K      A+ +FD M E + +    +I+G+   G  E + ++F++  
Sbjct: 278 DIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYAWNGQYEKSFDLFKRLQ 337

Query: 243 --TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
             + ++    +  M+   +I +  +    + H Q +      +V++G+ALVDMYAKC K 
Sbjct: 338 GTSFDRKNFPFATMLSVAAIELNLS-MGRQTHAQAVVTTAVSEVQVGNALVDMYAKCEKF 396

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           +DA R+F ++  +N   WT++I  Y + G   +AL++F  M    V  +  TF   L A 
Sbjct: 397 EDANRIFANLAYRNSVPWTAIISIYVQKGFHEEALKMFKEMNRENVHGDQATFASTLKAS 456

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            +   V  G+++  S+ R   +   +   + +VD+    GS++ A++   EMP++ N   
Sbjct: 457 ANLASVSLGKQLHSSVIR-LGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEMPDR-NIVC 514

Query: 421 WAALLSSCRLHDDVE 435
           W AL+S+   + D E
Sbjct: 515 WNALISAYSQNGDAE 529



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 110/451 (24%), Positives = 194/451 (43%), Gaps = 60/451 (13%)

Query: 65  LKIHAHITKTGVKPNT---NISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           + + A I KTG  P     N  +K L+   +   +  A Q+FDE+P R  S+ N M++GY
Sbjct: 31  IPVDARIVKTGFDPEISRFNFKLKDLV---RANQIAKARQLFDEMPYRNTSSVNMMVSGY 87

Query: 122 LK-------------------------------NGQVEESLSLVRKLVSSGERPDGYTFS 150
           +K                               N Q +E+ +L  ++  SG +PD  TF+
Sbjct: 88  VKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYTEMCRSGVKPDHITFA 147

Query: 151 MILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFD 210
            +L           L   L   +H+ I++    A  +++ +LVDSY K      A  +F 
Sbjct: 148 TLLSG---FDDTTTLKEVL--QIHSHIIRFGFSASLIVFNSLVDSYCKTCCLDIASQLFS 202

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETAR 266
            M  K+ +    MI+G+   GF E+A ++F +    D       + AM+ G S+  E   
Sbjct: 203 EMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAML-GMSVGSEDVI 261

Query: 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
              ++H   IK  +  D+ + +AL+D Y+K   ID A+ +FD M + +  ++  +I GY 
Sbjct: 262 FGQQIHGLAIKTSYVWDIFVANALLDFYSKHDYIDLAKNLFDEMPELDGVSYNIIITGYA 321

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM 386
            NG   ++ +LF  +Q          F   LS       +  GR+         ++  ++
Sbjct: 322 WNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQAVVTTAV-SEV 380

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS---SCRLHDDVEMANIAANE 443
           +    +VD+  +    E A +    +  + NS  W A++S       H++       A +
Sbjct: 381 QVGNALVDMYAKCEKFEDANRIFANLAYR-NSVPWTAIISIYVQKGFHEE-------ALK 432

Query: 444 IFK-LNANDRPGAYVALSNTLAAAGKWDSVT 473
           +FK +N  +  G     ++TL A+    SV+
Sbjct: 433 MFKEMNRENVHGDQATFASTLKASANLASVS 463



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 60/283 (21%), Positives = 119/283 (42%), Gaps = 46/283 (16%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +  S L+   N  +   G ++H+ + + G+  +      L+ ++  CG++K A ++F E+
Sbjct: 448 TFASTLKASANLASVSLGKQLHSSVIRLGLLSSVFSGSVLVDMYANCGSMKDAIEVFKEM 507

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P R +  +N +I+ Y +NG  E + S    ++ SG  PD  +F  +L   T C     + 
Sbjct: 508 PDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDSVSFLSVL---TACSHRGLVE 564

Query: 167 RNLGRM-VHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
           + L       Q+ K D +     Y  ++D   + G+                        
Sbjct: 565 KALWYFNSMTQVYKLDPRRKH--YATMIDVLCRSGR------------------------ 598

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFED 283
                 F E    I     E D V++++++    I  + + A+KA +   QL K     D
Sbjct: 599 ------FNEAENLISEMPFEPDEVMWSSVLNSCRIHKNQDLAKKAAD---QLFKMDALRD 649

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNV-----FTWTSM 321
                 + ++YA+ GK ++A +V   M+++ V     ++W  +
Sbjct: 650 AAAYVNMSNIYAEAGKWENAAKVKKAMRERGVKKVTAYSWVEI 692


>gi|297806919|ref|XP_002871343.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317180|gb|EFH47602.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 511

 Score =  264 bits (674), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 159/470 (33%), Positives = 251/470 (53%), Gaps = 47/470 (10%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++HAH  +TGV    ++  +LL++      L YA ++FD      +  YN +I  Y  + 
Sbjct: 6   QLHAHCLRTGVDETKDLLQRLLLI----PNLVYARKLFDLHRNPCIFLYNKLIQSYSVHH 61

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           Q  ES+ L   L   G RP+ +TF+ I  AS    S  PL     R++H+Q  +   ++D
Sbjct: 62  QPHESIVLYNLLSFDGIRPNHHTFNFIFAASASFSSARPL-----RLLHSQFFRSGFESD 116

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
               TAL+ +Y K G    AR VFD M  ++V    +MI+G+  +G ++ A E+F     
Sbjct: 117 SFCCTALITAYAKLGALCCARRVFDEMSNRDVPVWNAMITGYQRRGDMKAAMELFDSMPN 176

Query: 246 KDIVVYNAMIEGYS------------ISIETARKALEVHCQLI----------------- 276
           K++  +  +I G+S            + +E  +     H  L+                 
Sbjct: 177 KNVTSWTTVISGFSQNGNYSEALTMFLCMEKDKSVKPNHITLVSVLPACANLGELEIGRR 236

Query: 277 ------KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM-QQKNVFTWTSMIDGYGKNG 329
                 +N FF+++ + +A ++MY+KCG ID A+R+FD +  Q+N+ +W SMI     +G
Sbjct: 237 LEGYARENGFFDNIYVRNATLEMYSKCGMIDVAKRLFDEIGNQRNLISWNSMIGSLATHG 296

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
             ++ALEL+  M +   +P+ VTF+G L AC H G+V KG+E+ +SME  + + PK+EHY
Sbjct: 297 KHDEALELYAQMLQEGERPDAVTFVGLLLACVHGGMVLKGKELLKSMEEVHKISPKLEHY 356

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
            CM+DLLGR G L++A   +  MP KP++ VW  LL +C  H +VE+A IA+  + KL  
Sbjct: 357 GCMIDLLGRVGKLQEACDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALMKLEP 416

Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
            + PG  V +SN  AA  KWD V  +R+ MK   + K  G S+   E+G+
Sbjct: 417 TN-PGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSYF-VEAGV 464



 Score = 56.2 bits (134), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 51/93 (54%), Gaps = 1/93 (1%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP-QRTLSAYNYMIAGYL 122
           G ++  +  + G   N  +    L ++ KCG +  A ++FDE+  QR L ++N MI    
Sbjct: 234 GRRLEGYARENGFFDNIYVRNATLEMYSKCGMIDVAKRLFDEIGNQRNLISWNSMIGSLA 293

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
            +G+ +E+L L  +++  GERPD  TF  +L A
Sbjct: 294 THGKHDEALELYAQMLQEGERPDAVTFVGLLLA 326


>gi|224124578|ref|XP_002330058.1| predicted protein [Populus trichocarpa]
 gi|222871483|gb|EEF08614.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  264 bits (674), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 147/449 (32%), Positives = 239/449 (53%), Gaps = 71/449 (15%)

Query: 97  KYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV-----RKLVSSGERPDGYTFSM 151
           + A ++FD++P+    ++N +++GY++NG + E+  +      R +VS      GY    
Sbjct: 11  REARKLFDKMPETNTISWNGLVSGYVQNGMISEARKVFDKMPERNVVSWTAMIRGYVQEG 70

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           +++ +      +P  RN+                 V +T ++   ++ G+   AR +FDM
Sbjct: 71  LIEEAELLFWRMP-ERNV-----------------VSWTVMLGGLIEDGRVDEARQLFDM 112

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEG------YSISIET- 264
           M  K+V+ ST+MI G  S+G + +A EIF +  ++++V + +MI G      +S  I+  
Sbjct: 113 MPVKDVVASTNMIDGLCSEGRLIEAREIFDEMPQRNVVAWTSMISGEKDDGTWSTMIKIY 172

Query: 265 ARKALE----------------------------------------VHCQLIKNVFFEDV 284
            RK  E                                        VH QL+++ F  D+
Sbjct: 173 ERKGFELEALALFSLMQREGVRPSFPSVISVLSVCGSLASLDHGRQVHSQLVRSQFDIDI 232

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
            + S L+ MY KCG +  A+RVFD    K++  W S+I GY ++G   +ALE+F  M   
Sbjct: 233 YVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHDMFSS 292

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQ 404
            + P+ +TF+G LSAC + G V +G EIFESM+  Y + PK EHYACMVDLLGRAG L +
Sbjct: 293 SIAPDEITFIGVLSACSYTGKVKEGLEIFESMKSKYQVDPKTEHYACMVDLLGRAGKLNE 352

Query: 405 ALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464
           A+  +  MP + ++ VW ALL +CR H ++++A IAA ++ +L  N+  G Y+ LSN  +
Sbjct: 353 AMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAKKLLQLEPNN-AGPYILLSNLYS 411

Query: 465 AAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           +  +W  V ELR+ M+ + + K  GCSW+
Sbjct: 412 SQSRWKDVVELRKTMRAKNLRKSPGCSWI 440



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 43/184 (23%), Positives = 89/184 (48%), Gaps = 5/184 (2%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G ++H+ + ++    +  +S  L+ +++KCG L  A ++FD    + +  +N +IAGY 
Sbjct: 215 HGRQVHSQLVRSQFDIDIYVSSVLITMYIKCGDLVTAKRVFDRFSSKDIVMWNSIIAGYA 274

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           ++G  E++L +   + SS   PD  TF  +L A   C     +   L  +  +   K  V
Sbjct: 275 QHGFGEKALEVFHDMFSSSIAPDEITFIGVLSA---CSYTGKVKEGL-EIFESMKSKYQV 330

Query: 183 KADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
                 Y  +VD   + GK + A  ++ +M +E + I   +++    +   ++ AE   +
Sbjct: 331 DPKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLGACRTHKNLDLAEIAAK 390

Query: 242 KTVE 245
           K ++
Sbjct: 391 KLLQ 394


>gi|116312013|emb|CAJ86370.1| OSIGBa0117N13.14 [Oryza sativa Indica Group]
 gi|116312056|emb|CAJ86420.1| H0303G06.9 [Oryza sativa Indica Group]
          Length = 559

 Score =  264 bits (674), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 148/421 (35%), Positives = 234/421 (55%), Gaps = 16/421 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA   K     +  +   L+ +HL+CG+++ A Q+F E+ ++ + ++N +I G+++
Sbjct: 132 GEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIRGFVE 191

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G   ++L L   ++     PD YT    LKA  C    V +   L   +H+ I+K    
Sbjct: 192 RGHDGDALGLFSSMLKEAMIPDHYTLGSALKA--CGIVGVAVNVEL---IHSCIIKLGYW 246

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF-MSQGFVEDAEEIFRK 242
            + V+  +L++SY K    S AR+++D + E +++ ST++ISG+ M + + EDA E+F K
Sbjct: 247 DEKVVIGSLINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSEDAMELFCK 306

Query: 243 TVEKDIVVYNAMIEG---YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
              K + +   ++        S+ +AR   ++H  + K     D+ L +ALVDMYAK G+
Sbjct: 307 IHRKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQSMGDIALDNALVDMYAKAGE 366

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
             DA+R FD M  +NV +WTS+I   G+NG+   A+ LF  M E  V+PN VTFL  LSA
Sbjct: 367 FSDAKRAFDEMPYRNVISWTSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFLSLLSA 426

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           CGH GL +KG E F SM   Y + P+ EHY+  +DLL R G LE A K V +   KPNS 
Sbjct: 427 CGHCGLTNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQLEDAWKLVQKTNLKPNSS 486

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA---YVALSNTLAAAGKWDSVTELR 476
           +  A+L +C+LH ++ +   AA  +F ++    PG+   Y  L+N  A    W+     R
Sbjct: 487 MLGAMLGACKLHGNMLLGETAAKNLFSID----PGSSVNYAVLANMYAECSLWEDAQRTR 542

Query: 477 E 477
           E
Sbjct: 543 E 543



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 192/396 (48%), Gaps = 24/396 (6%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKP-NTNISIKLLILHLKCGALKYAGQM 102
           TA    S LQ  I+S     G  +H  +      P + ++S KL+I + + G +  A +M
Sbjct: 10  TAPFYSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLIIFYARFGDVAAARKM 69

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           FD +P R++ ++  M++GY +NG+  E+L L   + +SG RP+ +T+     A       
Sbjct: 70  FDGMPHRSVVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACA----- 124

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
                  G  VHA   K     D  + +AL+D +++ G    AR +F  M +K+V+   +
Sbjct: 125 GAGCARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNA 184

Query: 223 MISGFMSQGFVEDAEEIFRKTVEKDIV---------VYNAMIEGYSISIETARKALEVHC 273
           +I GF+ +G   DA  +F   +++ ++         +    I G ++++E       +H 
Sbjct: 185 LIRGFVERGHDGDALGLFSSMLKEAMIPDHYTLGSALKACGIVGVAVNVEL------IHS 238

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
            +IK  ++++  +  +L++ YAKC  +  AR ++D + + ++ + T++I GY  + N ++
Sbjct: 239 CIIKLGYWDEKVVIGSLINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSE 298

Query: 334 -ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACM 392
            A+ELFC +    +  + V     L  C        G +I   M +  SM       A +
Sbjct: 299 DAMELFCKIHRKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQSMGDIALDNA-L 357

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
           VD+  +AG    A +   EMP + N   W +L+++C
Sbjct: 358 VDMYAKAGEFSDAKRAFDEMPYR-NVISWTSLITAC 392



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/229 (30%), Positives = 116/229 (50%), Gaps = 9/229 (3%)

Query: 141 GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV-LYTALVDSYVKG 199
           G +P    +S +L+   CC S+    +  G+ VH ++        D+ L T L+  Y + 
Sbjct: 6   GAKPTAPFYSSLLQ---CCISSCAFRQ--GKSVHGRVAAASASPPDLHLSTKLIIFYARF 60

Query: 200 GKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF---RKTVEKDIVVYNAMIE 256
           G  + AR +FD M  ++V+  T+M+SG+   G   +A E+F   R +  +          
Sbjct: 61  GDVAAARKMFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAA 120

Query: 257 GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF 316
                   AR   +VH    K  F  D+ + SAL+DM+ +CG ++DAR++F  M +K+V 
Sbjct: 121 SACAGAGCARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVV 180

Query: 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365
           +W ++I G+ + G+   AL LF  M +  + P++ T   AL ACG  G+
Sbjct: 181 SWNALIRGFVERGHDGDALGLFSSMLKEAMIPDHYTLGSALKACGIVGV 229


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  264 bits (674), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 157/442 (35%), Positives = 241/442 (54%), Gaps = 19/442 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+ IH    + G + +  ++  L++L+ K G +  A ++FD    R L  +N MI+GY  
Sbjct: 125 GVWIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAH 184

Query: 124 NGQVEESLSLVRKLVSSGE-----RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ-- 176
            G   +SL + R++    +     +PD +TF+ +LKA      ++   R  G  VHA   
Sbjct: 185 AGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKAC----GSLGAARE-GAQVHAAMV 239

Query: 177 ILKCDVKADDVLYTALVDSYVKGG-KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
           I      ++ +L  AL+D YVK       A  VF+ + +KN I  T++I G   +G V++
Sbjct: 240 IRGVSTASNAILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKE 299

Query: 236 AEEIFRK----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALV 291
           A E+F +     V  D  V ++++ G         +  +VHC  +K     DV + ++L+
Sbjct: 300 AMELFGRFWSSGVRADGHVLSSVV-GVFADFALVEQGRQVHCYTVKTPAGLDVSVANSLI 358

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
           DMY KCG  D+A R F  +  +NV +WT+MI+G GK+G+  +A+ +F  M+   V+P+ V
Sbjct: 359 DMYHKCGLTDEAARRFREVPARNVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEV 418

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
            +L  LSAC H+GLV++ R  F ++  D  ++P+ EHYACMVDLLGRAG L +A   V  
Sbjct: 419 AYLALLSACSHSGLVEECRRYFSAIRHDRRLRPRAEHYACMVDLLGRAGELSEAKDLVAT 478

Query: 412 MPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471
           MP  P   VW  LLS+CR+H +V +   A   +  ++  D P  YV LSN  A AG W  
Sbjct: 479 MPMAPTVGVWQTLLSACRVHKNVTVGREAGETLLAID-GDNPVNYVMLSNIFAEAGDWRE 537

Query: 472 VTELREKMKLRGVLKDTGCSWV 493
              +R  M+ RG+ K  GCSWV
Sbjct: 538 CQRVRGAMRRRGLRKQGGCSWV 559



 Score =  138 bits (347), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 107/421 (25%), Positives = 201/421 (47%), Gaps = 29/421 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H  + K G   +T +   L+ ++ KCG L+ AG++F  +P+R + ++  ++ G+L+
Sbjct: 23  GAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGMPERNVVSWTALMVGFLR 82

Query: 124 NGQVEESLSLVRKLVS-SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +G   E L L+  + S S   P+ +T S  LKA       V      G  +H   ++   
Sbjct: 83  HGDARECLRLLGAMRSLSDVAPNEFTLSASLKA-----CGVVGDMAAGVWIHGACVRAGF 137

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           +   V+  +LV  Y KGG+   AR VFD  + +N++   +MISG+   G   D+  +FR+
Sbjct: 138 EGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAGHGRDSLLVFRE 197

Query: 243 TVEK---------DIVVYNAMIEGYSISIETARKALEVHCQL-IKNV-FFEDVKLGSALV 291
             ++         D   + ++++    S+  AR+  +VH  + I+ V    +  L  AL+
Sbjct: 198 MQQRRQEEEDHQPDEFTFASLLKACG-SLGAAREGAQVHAAMVIRGVSTASNAILAGALL 256

Query: 292 DMYAKCG-KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY 350
           DMY KC   +  A +VF+ ++QKN   WT++I G+ + G   +A+ELF       V+ + 
Sbjct: 257 DMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRFWSSGVRADG 316

Query: 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKP----KMEHYACMVDLLGRAGSLEQAL 406
                 +       LV++GR++       Y++K      +     ++D+  + G  ++A 
Sbjct: 317 HVLSSVVGVFADFALVEQGRQV-----HCYTVKTPAGLDVSVANSLIDMYHKCGLTDEAA 371

Query: 407 KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
           +   E+P + N   W A+++    H   + A     E+          AY+AL +  + +
Sbjct: 372 RRFREVPAR-NVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSACSHS 430

Query: 467 G 467
           G
Sbjct: 431 G 431


>gi|357138408|ref|XP_003570784.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Brachypodium distachyon]
          Length = 750

 Score =  264 bits (674), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 144/407 (35%), Positives = 230/407 (56%), Gaps = 11/407 (2%)

Query: 91  LKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFS 150
           L+C  +  A  +F+ + +R    +  M+ G  +NG   E+L + R++ + G   D YTF 
Sbjct: 222 LRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAEGVGIDQYTFG 281

Query: 151 MILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFD 210
            IL   T C +   L    G+ +HA I +   + +  + +ALVD Y K      A  VF 
Sbjct: 282 SIL---TACGALAALEE--GKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFR 336

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETAR 266
            M+ KN+I  T+MI G+   G  E+A  +F    R  ++ D     ++I   + ++ +  
Sbjct: 337 RMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSCA-NLASLE 395

Query: 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
           +  + HC  + +     V + +ALV +Y KCG I+DA R+FD M   +  +WT+++ GY 
Sbjct: 396 EGAQFHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVMGYA 455

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM 386
           + G   + ++LF  M    V+P+ VTF+G LSAC  +GLVDKGR  F SM++D+ + P  
Sbjct: 456 QFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKGRSYFHSMQQDHDIVPLD 515

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446
           +HY CM+DL  R+G L+QA +F+ +MP  P++  WA LLS+CRL  D+E+   AA  + K
Sbjct: 516 DHYTCMIDLYSRSGWLKQAEEFIKQMPRCPDAFGWATLLSACRLRGDMEIGKWAAENLLK 575

Query: 447 LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           L+  + P +YV L +  A+ G+W+ V +LR  M+ R V K+ GCSW+
Sbjct: 576 LDPQN-PASYVLLCSMHASKGEWNDVAKLRRGMRDRQVKKEPGCSWI 621



 Score =  155 bits (391), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 125/445 (28%), Positives = 196/445 (44%), Gaps = 83/445 (18%)

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGY----LKNGQVEESLSLVRKLVSSGERPDGY 147
           + G ++   ++F  LPQR   +YN ++AG+             ++L+R    +G RP   
Sbjct: 89  RAGLVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRD--EAGVRPSRI 146

Query: 148 TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARI 207
           T S ++  ++         R LGR VH QIL+    A     + LVD Y K G    AR 
Sbjct: 147 TMSGVVMVASALGD-----RALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARR 201

Query: 208 VFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMI------------ 255
           VFD M  KNV+   +MI+G +    V +A  +F    E+D + +  M+            
Sbjct: 202 VFDEMEGKNVVMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEA 261

Query: 256 ---------EGYSI------SIETARKAL-------EVHCQLIKNVFFEDVKLGSALVDM 293
                    EG  I      SI TA  AL       ++H  + +  + ++V +GSALVDM
Sbjct: 262 LDVFRRMRAEGVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDM 321

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           Y+KC  +  A  VF  M  KN+ +WT+MI GYG+NG   +A+ +F  MQ   ++P+  T 
Sbjct: 322 YSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTL 381

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
              +S+C +   +++G + F  +     ++P +     +V L G+ GS+E A +   EM 
Sbjct: 382 GSVISSCANLASLEEGAQ-FHCLALVSGLRPYVTVSNALVTLYGKCGSIEDAHRLFDEMS 440

Query: 414 EKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473
                            HD V                    ++ AL    A  GK     
Sbjct: 441 ----------------FHDQV--------------------SWTALVMGYAQFGKAKETI 464

Query: 474 ELREKMKLRGVLKDTGCSWVGTESG 498
           +L EKM  +GV  D G +++G  S 
Sbjct: 465 DLFEKMLSKGVKPD-GVTFIGVLSA 488



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 107/398 (26%), Positives = 162/398 (40%), Gaps = 117/398 (29%)

Query: 173 VHAQILKC-DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
           VHA IL+     +   L   L+ +Y   G   +AR VFD M  +N++   S++S     G
Sbjct: 32  VHALILRTLPHPSPTYLLNTLLTAYASSGLLPHARRVFDAMPGRNLVTGNSLLSALARAG 91

Query: 232 FVEDAEEIFRKTVEKDIVVYNAMIEGYS-------------------------------- 259
            V D E +F    ++D V YNA++ G+S                                
Sbjct: 92  LVRDMERLFTSLPQRDAVSYNALLAGFSRAGAHARAAGAYVALLRDEAGVRPSRITMSGV 151

Query: 260 --ISIETARKAL--EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
             ++     +AL  +VHCQ+++  F      GS LVDMYAK G I DARRVFD M+ KNV
Sbjct: 152 VMVASALGDRALGRQVHCQILRLGFGAYAFTGSPLVDMYAKVGPIGDARRVFDEMEGKNV 211

Query: 316 -------------------------------FTWTSMIDGYGKNGNPNQALELFCMMQEC 344
                                           TWT+M+ G  +NG  ++AL++F  M+  
Sbjct: 212 VMCNTMITGLLRCKMVAEARALFEAIEERDSITWTTMVTGLTQNGLESEALDVFRRMRAE 271

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERD---------------YS-------- 381
            V  +  TF   L+ACG    +++G++I   + R                YS        
Sbjct: 272 GVGIDQYTFGSILTACGALAALEEGKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLA 331

Query: 382 -------MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSCRLH 431
                  M   +  +  M+   G+ G  E+A++   EM     KP+     +++SSC   
Sbjct: 332 EAVFRRMMWKNIISWTAMIVGYGQNGCGEEAVRVFSEMQRDGIKPDDFTLGSVISSC--- 388

Query: 432 DDVEMANIAANE------IFKLNANDRPGAYVALSNTL 463
                AN+A+ E         L +  RP  YV +SN L
Sbjct: 389 -----ANLASLEEGAQFHCLALVSGLRP--YVTVSNAL 419



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 74/318 (23%), Positives = 139/318 (43%), Gaps = 45/318 (14%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IHA+IT+T  + N  +   L+ ++ KC +++ A  +F  +  + + ++  MI GY +
Sbjct: 296 GKQIHAYITRTCYEDNVFVGSALVDMYSKCRSVRLAEAVFRRMMWKNIISWTAMIVGYGQ 355

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  EE++ +  ++   G +PD +T   ++  S+C         NL  +       C   
Sbjct: 356 NGCGEEAVRVFSEMQRDGIKPDDFTLGSVI--SSCA--------NLASLEEGAQFHC--- 402

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
                  ALV                   L   V  S ++++ +   G +EDA  +F + 
Sbjct: 403 ------LALVSG-----------------LRPYVTVSNALVTLYGKCGSIEDAHRLFDEM 439

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
              D V + A++ GY+     A++ +++  +++      D      ++   ++ G +D  
Sbjct: 440 SFHDQVSWTALVMGYA-QFGKAKETIDLFEKMLSKGVKPDGVTFIGVLSACSRSGLVDKG 498

Query: 304 RRVFDHMQQKNVFT-----WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           R  F  MQQ +        +T MID Y ++G   QA E    M  C   P+   +   LS
Sbjct: 499 RSYFHSMQQDHDIVPLDDHYTCMIDLYSRSGWLKQAEEFIKQMPRC---PDAFGWATLLS 555

Query: 359 ACGHAGLVDKGREIFESM 376
           AC   G ++ G+   E++
Sbjct: 556 ACRLRGDMEIGKWAAENL 573


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 153/444 (34%), Positives = 245/444 (55%), Gaps = 15/444 (3%)

Query: 64   GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
            G +IH    K G+  + ++S  LL L+ +  ++    ++F ++P+    ++N  I    K
Sbjct: 576  GRQIHGEGFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAK 635

Query: 124  -NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
                V ++L    +++ +G RP+  TF  IL A +           LG  +HA ILK  V
Sbjct: 636  YEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFS-----VLGLGHQIHALILKYSV 690

Query: 183  KADDVLYTALVDSYVKGGKTSYARIVFDMMLEK-NVICSTSMISGFMSQGFVEDAEEIFR 241
              D+ +  AL+  Y K  +     I+F  M E+ + +   SMISG++  G +  A ++  
Sbjct: 691  ADDNAIENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVW 750

Query: 242  KTVEK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
              +++    D   +  ++   + S+ T  + +EVH   ++     DV +GSALVDMYAKC
Sbjct: 751  PMMQRGQKLDGFTFATVLSACA-SVATLERGMEVHACAVRACLESDVVVGSALVDMYAKC 809

Query: 298  GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
            GKID A R F+ M  +N+++W SMI GY ++G+  +AL++F  M++    P++VTF+G L
Sbjct: 810  GKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVL 869

Query: 358  SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            SAC H GLVD+G + F+SM   Y + P++EH++CMVDLLGRAG +++   F+  MP  PN
Sbjct: 870  SACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKIEDFIKTMPMDPN 929

Query: 418  SDVWAALLSSCRLHD--DVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
              +W  +L +C   +  + E+   AA  + +L   +    YV LSN  AA G W+ V E 
Sbjct: 930  ILIWRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVN-YVLLSNMHAAGGNWEDVVEA 988

Query: 476  REKMKLRGVLKDTGCSWVGTESGL 499
            R  M+   V KD GCSWV  + G+
Sbjct: 989  RLAMRKAAVKKDAGCSWVNMKDGV 1012



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 175/367 (47%), Gaps = 24/367 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKC-GALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G++IHA I K     +  +S  L+ ++  C G++  A ++FDE+  R    +N +I+ Y 
Sbjct: 262 GMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYC 321

Query: 123 KNGQVEESLSLVRKLVSSGE----RPDGYTFSMILKASTCCRSN---VPLPRNLGRMVHA 175
           + G    +  L   +   G     RP+ YT   ++ A+ C  ++   V L + L R+  +
Sbjct: 322 RRGDAVSAFKLFSVMQMEGVELNLRPNEYTLCSLVTAA-CSLADCGLVLLEQMLTRIEKS 380

Query: 176 QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
             L+     D  + +ALV+ + + G    A+++F  M ++N +    ++ G   Q   E+
Sbjct: 381 GFLR-----DLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEE 435

Query: 236 AEEIFRKTVE------KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE-DVKLGS 288
           A ++F++  +      + +VV  +    +S   E  RK  EVH  L ++   +  + +G+
Sbjct: 436 AAKVFKEMKDLVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGN 495

Query: 289 ALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348
           ALV+MY KC  ID+A  VF  M  K+  +W SMI G   N    +A+  F  M+   + P
Sbjct: 496 ALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVP 555

Query: 349 NYVTFLGALSACGHAGLVDKGREIF-ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALK 407
           +  + +  LS+C   G +  GR+I  E  +    +   + +   ++ L     S+ +  K
Sbjct: 556 SNFSVISTLSSCSSLGWLTLGRQIHGEGFKWGLDLDVSVSN--ALLTLYAETDSINECQK 613

Query: 408 FVLEMPE 414
              +MPE
Sbjct: 614 VFFQMPE 620



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 102/406 (25%), Positives = 192/406 (47%), Gaps = 23/406 (5%)

Query: 48  LPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP 107
           L S    Y  S + +    +H  + KTG   +      L+ ++++ G L  A ++FDE+P
Sbjct: 143 LDSEFDRYKTSSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMP 202

Query: 108 QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR 167
           Q+ L +++ +I+GY +N   +E+ SL + ++SSG  P+ +     L+A   C S      
Sbjct: 203 QKNLVSWSCLISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGST---GI 259

Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVK-GGKTSYARIVFDMMLEKNVICSTSMISG 226
            LG  +HA I K    +D +L   L+  Y    G    A  VFD +  +N +   S+IS 
Sbjct: 260 KLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISV 319

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI-SIETARKALEVHCQLI--------- 276
           +  +G    A ++F   ++ + V  N     Y++ S+ TA  +L   C L+         
Sbjct: 320 YCRRGDAVSAFKLF-SVMQMEGVELNLRPNEYTLCSLVTAACSL-ADCGLVLLEQMLTRI 377

Query: 277 -KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
            K+ F  D+ +GSALV+ +A+ G +D A+ +F  M  +N  T   ++ G  +     +A 
Sbjct: 378 EKSGFLRDLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAA 437

Query: 336 ELFCMMQECCVQPNYVTFLGALSACGHAGLVD----KGREIFESMERDYSMKPKMEHYAC 391
           ++F  M++  V+ N  + +  LS       +     KG+E+   + R   +  ++     
Sbjct: 438 KVFKEMKD-LVEINSESLVVLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNA 496

Query: 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           +V++ G+  +++ A      MP K ++  W +++S    ++  E A
Sbjct: 497 LVNMYGKCTAIDNACSVFQLMPSK-DTVSWNSMISGLDHNERFEEA 541



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/375 (24%), Positives = 176/375 (46%), Gaps = 15/375 (4%)

Query: 64  GLKIHAHITKTG-VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G ++HA++ ++G V    +I   L+ ++ KC A+  A  +F  +P +   ++N MI+G  
Sbjct: 474 GQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNSMISGLD 533

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            N + EE++S    +  +G  P    FS+I   S+C          LGR +H +  K  +
Sbjct: 534 HNERFEEAVSCFHTMKRNGMVPS--NFSVISTLSSCSSLGWL---TLGRQIHGEGFKWGL 588

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS-QGFVEDAEEIFR 241
             D  +  AL+  Y +    +  + VF  M E + +   S I      +  V  A + F 
Sbjct: 589 DLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFL 648

Query: 242 KTVEK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           + ++     + V +  ++   S S        ++H  ++K    +D  + +AL+  Y KC
Sbjct: 649 EMMQAGWRPNRVTFINILAAVS-SFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKC 707

Query: 298 GKIDDARRVFDHM-QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
            +++D   +F  M ++++  +W SMI GY  +G  ++A++L   M +   + +  TF   
Sbjct: 708 EQMEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATV 767

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           LSAC     +++G E+     R   ++  +   + +VD+  + G ++ A +F   MP + 
Sbjct: 768 LSACASVATLERGMEVHACAVRA-CLESDVVVGSALVDMYAKCGKIDYASRFFELMPVR- 825

Query: 417 NSDVWAALLSSCRLH 431
           N   W +++S    H
Sbjct: 826 NIYSWNSMISGYARH 840



 Score = 78.2 bits (191), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 9/228 (3%)

Query: 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
           A  +H QL K  F +DV   + L+++Y + G +  AR++FD M QKN+ +W+ +I GY +
Sbjct: 159 ANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQ 218

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL--VDKGREIFESMERDYSMKPK 385
           N  P++A  LF  +    + PN+     AL AC   G   +  G +I   + +   +   
Sbjct: 219 NRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDM 278

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS-CRLHDDVEMANI-AANE 443
           +     M      +GS++ A +   E+  + NS  W +++S  CR  D V    + +  +
Sbjct: 279 ILSNVLMSMYSDCSGSIDDAHRVFDEIKFR-NSVTWNSIISVYCRRGDAVSAFKLFSVMQ 337

Query: 444 IFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR----GVLKD 487
           +  +  N RP  Y   S   AA    D    L E+M  R    G L+D
Sbjct: 338 MEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLRD 385


>gi|115471645|ref|NP_001059421.1| Os07g0299800 [Oryza sativa Japonica Group]
 gi|34394298|dbj|BAC84780.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113610957|dbj|BAF21335.1| Os07g0299800 [Oryza sativa Japonica Group]
          Length = 673

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 149/437 (34%), Positives = 255/437 (58%), Gaps = 19/437 (4%)

Query: 66  KIHAHITKTGVKPNTNISIK-LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           ++H    ++G+ P+   S   LL ++  C     A + FDE+P         M +GY++N
Sbjct: 114 QLHLLALRSGLFPSDPYSASALLHMYHHCSRPMDARRAFDEIPDPNPVIVTAMASGYVRN 173

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
             V  SL L R +++S         + ++  S   R  VP  R +   +HA I K   + 
Sbjct: 174 NLVYHSLELFRAMIASDSASVVDEAAALVAFSASAR--VP-DRGVTASLHALIAKIGFER 230

Query: 185 DDVLYTALVDSYVKGGKT--SYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           +  +   ++DSY KGG      AR VFD M E++V+   SMI+ +   G   +A  ++ K
Sbjct: 231 NAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAIGLYSK 289

Query: 243 T------VEKDIVVYNAMIEG--YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
                  ++ + V  +A++    ++ +I+T ++   +H Q+++    E+V +G+++VDMY
Sbjct: 290 MLNVGGGIKCNAVALSAVLLACAHAGAIQTGKR---IHNQVVRMGLEENVYVGTSIVDMY 346

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           +KCG+++ A R F  +++KN+ +W++MI GYG +G   +ALE+F  M+   ++PNY+TF+
Sbjct: 347 SKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFI 406

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             L+AC HAGL+D+GR  + +M++++ ++  +EHY CMVDLLGRAG L++A   + EM  
Sbjct: 407 SVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLIKEMKV 466

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
           KP++ +W ALLS+CR+H +VE+A ++   +F+L+A++  G YV LSN  A A  W  V  
Sbjct: 467 KPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASN-SGYYVLLSNIYAEARMWKDVER 525

Query: 475 LREKMKLRGVLKDTGCS 491
           +R  +K R + K  G S
Sbjct: 526 IRLLVKTRRIEKPPGYS 542


>gi|449484291|ref|XP_004156841.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g14050, mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 159/462 (34%), Positives = 255/462 (55%), Gaps = 42/462 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++H+ I K G   ++ +S  LL ++ KCG +  A Q+FDE+P R   ++  ++  + K  
Sbjct: 24  ELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKAL 83

Query: 126 QVEESLSLVRKLVS-SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
               +LS++  + +  G +PD + F+ I++A   C S   L   LG+ VHA+ +      
Sbjct: 84  IPRRTLSMLNTMFTHDGLQPDHFVFACIVRA---CSSLGYL--RLGKQVHARFMLSXFCD 138

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
           D+V+ ++L+D Y K G+   AR VFD +L KN +  TSMISG+   G   +A ++F +  
Sbjct: 139 DEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAP 198

Query: 245 EKDIVVYNAMIEG--------YSISI--ETARKAL------------------------- 269
            +++  + A+I G        YS S+  E  R+ +                         
Sbjct: 199 VRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGK 258

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
           ++H  +I   F   + + +ALVDMYAKC  I  A+ +F  M +K+V +WTS+I G  ++G
Sbjct: 259 QIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHG 318

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
              +AL L+  M    ++PN VTF+G L AC HAGLV +GRE+F SM  DYS+ P ++HY
Sbjct: 319 KAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHY 378

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
            C++DLL R+G L++A   + ++P KP+   WA+LLS+C  H+++EM    A+ +  L  
Sbjct: 379 TCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKP 438

Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
            D P  Y+ LSN  A A  W SV+++R+ M    V K+ G S
Sbjct: 439 ED-PSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYS 479



 Score = 64.3 bits (155), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 81/165 (49%), Gaps = 3/165 (1%)

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
           ++A  A E+H Q+IK  F +   L + L+D+Y KCG I  A ++FD M  ++  +W S++
Sbjct: 17  QSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASIL 76

Query: 323 DGYGKNGNPNQALELF-CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
             + K   P + L +   M     +QP++  F   + AC   G +  G+++         
Sbjct: 77  TAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSXF 136

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
              ++   + ++D+  + G  ++A + V +     NS  W +++S
Sbjct: 137 CDDEVVK-SSLIDMYTKCGQPDEA-RAVFDSILFKNSVSWTSMIS 179



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 76/351 (21%), Positives = 149/351 (42%), Gaps = 40/351 (11%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA    +    +  +   L+ ++ KCG    A  +FD +  +   ++  MI+GY +
Sbjct: 124 GKQVHARFMLSXFCDDEVVKSSLIDMYTKCGQPDEARAVFDSILFKNSVSWTSMISGYAR 183

Query: 124 NGQVEESLSL-----VRKLVS-----SGERPDG---YTFS---------------MILKA 155
           +G+  E++ L     VR L S     SG    G   Y+FS               ++L +
Sbjct: 184 SGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSS 243

Query: 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
                +N+ L   LG+ +H  ++    ++   +  ALVD Y K      A+ +F  M  K
Sbjct: 244 VVGGCANLAL-LELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRK 302

Query: 216 NVICSTSMISGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV 271
           +VI  TS+I G    G  E+A    +E+    ++ + V +  ++   S +   +R     
Sbjct: 303 DVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELF 362

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNGN 330
                       ++  + L+D+ ++ G +D+A  + D +  K +  TW S++    ++ N
Sbjct: 363 RSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNN 422

Query: 331 PNQALELFCMMQECCVQP----NYVTFLGALSACGHAGLVDKGREIFESME 377
               + +   + +  ++P     Y+      +     G V K R++  SME
Sbjct: 423 LEMGVRIADRVLD--LKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSME 471


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 172/511 (33%), Positives = 266/511 (52%), Gaps = 70/511 (13%)

Query: 24  PPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNIS 83
           P N TFP  L+           ++L S L+          G +IH H+ + G   +  + 
Sbjct: 91  PSNFTFPFVLK---------ACSTLGSVLE----------GEQIHTHVLRLGFGSDLFVC 131

Query: 84  IKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVE--------------- 128
             L+ ++ KC  L  A   +D++  R   ++N +I+GY++ GQVE               
Sbjct: 132 NSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQWGQVEKARDLFEEMPMRRNV 191

Query: 129 -----------------ESLSLVRKLVSSGE--RPDGYTFSMILKA-STCCRSNVPLPRN 168
                            E LSL R+++ S +  +P+  T   +L A ST C   V     
Sbjct: 192 VCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMVCLLSACSTLCNYEV----- 246

Query: 169 LGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM 228
            GR +   I    +  + +L TAL+D Y K G    A  +FD +  KN+    ++I+G +
Sbjct: 247 -GRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRIFDGVSCKNLPSWNAIITGCV 305

Query: 229 SQGFVEDAEEIFRKTVEK-----DIVVYNAMIEGYSI-SIETARKALEVHCQLIKNVFFE 282
             G +E+A +++R    +     +I + N +     + ++E  R   EVH  L +N    
Sbjct: 306 QGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELGR---EVHLYLGRNGLDL 362

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           +V L +ALVDMYAKCGKIDDA  +F    +K+V  W +MI G   +G+   +L +F  M 
Sbjct: 363 NVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHGDGRDSLAVFSQMV 422

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
              VQPN VTF+G LSAC H+GLV++GR  F SM   + + PK+EHYACMVDLLGRAG L
Sbjct: 423 RAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHYACMVDLLGRAGHL 482

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
           ++A + V  M   P+S +W ALLS+CR+H ++E+A+   +E    + +   G  + LSN 
Sbjct: 483 KEAYELVQNMLIPPDSIIWGALLSACRIHRNLELAD-KISETIMASQDPNIGFCILLSNI 541

Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            A++G+W  V  +R ++K + + K +GCSWV
Sbjct: 542 YASSGRWKDVARVRRQVKEKRIKKPSGCSWV 572



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 117/427 (27%), Positives = 203/427 (47%), Gaps = 61/427 (14%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           TATSL     H I++ T  +GL +  H+             KL+ LH    ++ YA  + 
Sbjct: 8   TATSLTQI--HQIHAQTLIHGLPLQTHLIP-----------KLIDLH----SIDYARFVL 50

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           D+ P  T  ++N +I  Y  +G  + SL L  K++ S  +P  +TF  +LKA +   S +
Sbjct: 51  DQTPSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVL 110

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
                 G  +H  +L+    +D  +  +L+D Y K  +   AR  +D M  ++ +   S+
Sbjct: 111 E-----GEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSI 165

Query: 224 ISGFMSQGFVEDAEEIFRKT-VEKDIVVYNAMIEGY----------SISIETARKALEVH 272
           ISG++  G VE A ++F +  + +++V + AMI GY          S+  +    A EV 
Sbjct: 166 ISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQ 225

Query: 273 ------------CQLIKNV-------FFEDVK-------LGSALVDMYAKCGKIDDARRV 306
                       C  + N         F DV        L +AL+DMY+KCG ++ A R+
Sbjct: 226 PNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRI 285

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           FD +  KN+ +W ++I G  + G   +A++L+  M+   V+PN +T +  LSAC   G +
Sbjct: 286 FDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGAL 345

Query: 367 DKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           + GRE+   + R+  +   +     +VD+  + G ++ A    ++  EK +  +W A++ 
Sbjct: 346 ELGREVHLYLGRN-GLDLNVILATALVDMYAKCGKIDDACLIFVKTSEK-DVALWNAMIL 403

Query: 427 SCRLHDD 433
               H D
Sbjct: 404 GLAYHGD 410



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 44/178 (24%), Positives = 75/178 (42%), Gaps = 7/178 (3%)

Query: 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
           + TA    ++H Q+        + L + L+        ID AR V D       F+W S+
Sbjct: 6   LRTATSLTQIH-QIHAQTLIHGLPLQTHLIPKLIDLHSIDYARFVLDQTPSPTDFSWNSL 64

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           I  Y  +G+P  +L L+  M     +P+  TF   L AC   G V +G +I   + R   
Sbjct: 65  IRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGEQIHTHVLR--- 121

Query: 382 MKPKMEHYAC--MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           +    + + C  ++D+  +   L+ A  F  +M  +     W +++S       VE A
Sbjct: 122 LGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVS-WNSIISGYVQWGQVEKA 178


>gi|357453927|ref|XP_003597244.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355486292|gb|AES67495.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 678

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 150/436 (34%), Positives = 236/436 (54%), Gaps = 15/436 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+ IH+ + KTG   +  +   ++  + KCG L+ A ++FD++  + + ++  MI G ++
Sbjct: 123 GVMIHSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIE 182

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G+  E++ L R L+ SG RPDG+    +L+A  C R         GR +   + +C + 
Sbjct: 183 FGKFREAVDLFRGLLESGLRPDGFVIVRVLRA--CARLG---DLESGRWIDRCMRECGLS 237

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
            +  + T+LVD Y K G    AR VFD M+EK+++C ++MI G+ S G   +A E+F   
Sbjct: 238 RNVFVATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEM 297

Query: 241 -RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV--FFEDVKLGSALVDMYAKC 297
            +  V  D     AM+   S         L    + + N   F  +  LG++L+D YAKC
Sbjct: 298 RKVNVRPDCY---AMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLGTSLIDFYAKC 354

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G +++A  V+  M++K+   + ++I G    G    A  +F  M +  + PN  TF+G L
Sbjct: 355 GSMEEALGVYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLL 414

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
             C HAGLVD GR  F SM  D+S+ P +EHY CMVDLL RAG L++A   +  MP K N
Sbjct: 415 CGCTHAGLVDDGRHYFNSMSHDFSVTPTIEHYGCMVDLLARAGFLDEAHNLIKGMPMKAN 474

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
             VW +LL  CRLH + ++A     ++ +L   +  G YV LSN  +A+ +WD   ++R 
Sbjct: 475 VIVWGSLLGGCRLHRETQLAEHVLKQLIELEPWN-SGHYVLLSNIYSASRRWDEAEKIRS 533

Query: 478 KMKLRGVLKDTGCSWV 493
            +  +G+ K  G SWV
Sbjct: 534 TVNEKGMQKLPGYSWV 549



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 111/366 (30%), Positives = 181/366 (49%), Gaps = 22/366 (6%)

Query: 114 YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMV 173
           YN MI G +   +   ++ L   +  +   PD +TFS +LKA  C R N+    +LG M+
Sbjct: 72  YNTMIRGMVSKDRFNNAVHLYASMHKAAIVPDSFTFSFVLKA--CARLNL---FHLGVMI 126

Query: 174 HAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFV 233
           H+ + K     D  + T +V  Y K G    A  VFD M+ KNV+  T MI G +  G  
Sbjct: 127 HSLVFKTGFDCDVFVKTNVVCFYSKCGFLRDAWKVFDDMVVKNVVSWTGMICGCIEFGKF 186

Query: 234 EDAEEIFRKTVEKDI-----VVYNAMIEGYSIS-IETARKALEV--HCQLIKNVFFEDVK 285
            +A ++FR  +E  +     V+   +     +  +E+ R        C L +NVF     
Sbjct: 187 REAVDLFRGLLESGLRPDGFVIVRVLRACARLGDLESGRWIDRCMRECGLSRNVF----- 241

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           + ++LVDMY KCG +++AR VFD M +K++  W++MI GY  NG P +A+ELF  M++  
Sbjct: 242 VATSLVDMYTKCGSMEEARFVFDGMVEKDIVCWSAMIQGYASNGLPREAIELFFEMRKVN 301

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESME-RDYSMKPKMEHYACMVDLLGRAGSLEQ 404
           V+P+    +GALS+C   G ++ G      M   ++   P +     ++D   + GS+E+
Sbjct: 302 VRPDCYAMVGALSSCASLGALELGNWAKGLMNYEEFLSNPVLG--TSLIDFYAKCGSMEE 359

Query: 405 ALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464
           AL  V +M ++ +  V+ A++S   ++  V  A     ++ K         +V L     
Sbjct: 360 ALG-VYKMMKEKDRVVFNAVISGLAMYGQVGAAFGVFGQMGKFGIPPNEHTFVGLLCGCT 418

Query: 465 AAGKWD 470
            AG  D
Sbjct: 419 HAGLVD 424


>gi|357114151|ref|XP_003558864.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic-like [Brachypodium distachyon]
          Length = 782

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 149/465 (32%), Positives = 251/465 (53%), Gaps = 30/465 (6%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L A  L SAL           G ++HA++ + G++ +  +   LL ++ KCGA+  A  M
Sbjct: 217 LAACCLDSALMQ---------GREVHAYVIRHGLEQDVKVGTSLLDMYCKCGAIASAEGM 267

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           F  +P RT+  +N MI GY  NG  EE+     ++ + G + +  T   +L A  C ++ 
Sbjct: 268 FATMPSRTVVTWNCMIGGYALNGCPEEAFDCFVQMKAEGHQVEVVTAINLLAA--CAQTE 325

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
             L    GR VH  + +       VL TAL++ Y K GK   +  +F  M  K ++   +
Sbjct: 326 SSL---YGRSVHGYVTRSQFLPHVVLETALLEMYSKVGKVKSSETIFGQMTNKTLVSWNN 382

Query: 223 MISGFMSQGFVEDAEEIFRKTVEK----DIVVYNAMIEGYSISIETARKALEVHCQLIKN 278
           MI+ +M +    +A  +F + + +    D    +A++  + + +   R+  ++H  +++ 
Sbjct: 383 MIAAYMYKEMYNEAITLFLELLNQPLYPDYFTMSAVVPAF-VLLGLLRQCRQMHSYIVRL 441

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
            + E+  + +A++ MYA+CG +  +R++FD M  K+V +W ++I GY  +G    ALE+F
Sbjct: 442 DYGENTLVTNAVMHMYARCGDVVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMF 501

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398
             M+   +QPN  TF+  L+AC  +G+ D+G   F  M+RDY + P++EHY CM DLLGR
Sbjct: 502 SEMKSNGLQPNESTFVSVLTACSVSGMADEGWIQFNLMQRDYGIIPQIEHYGCMTDLLGR 561

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVA 458
           AG L + LKF+  +P  P   +W +LL++ R  +D+++A  AA  IF+L  +D  G YV 
Sbjct: 562 AGDLREVLKFIESIPITPTFRIWGSLLTASRNRNDIDIAEYAAERIFELE-HDNTGCYVI 620

Query: 459 LSNTLAAAGKWDSVTELREKMKLRGV----------LKDTGCSWV 493
           LS+  A AG+W+ V  +R  M  +G+          L  + CS+V
Sbjct: 621 LSSMYADAGRWEDVQRIRSSMMEKGLRRTDARSIVELHGSSCSFV 665



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/350 (28%), Positives = 170/350 (48%), Gaps = 22/350 (6%)

Query: 76  VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSA----YNYMIAGYLKNGQVEESL 131
           V+P    S+K L+L     +   AG+M D L     S     +N +I G+   G  E +L
Sbjct: 38  VRPKRGPSLKSLVL-----SHAAAGRMHDALAAVRSSPDAFLHNVVIRGFADAGLPEAAL 92

Query: 132 SLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT- 190
           +  R ++++G RPD +TF +++K   CC     L    GR  H+  ++  +   +V YT 
Sbjct: 93  AAYRAMLAAGARPDRFTFPVVVK---CCARLGALEE--GRAAHSAAIRLGLVGSEV-YTG 146

Query: 191 -ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIV 249
            +L+  Y K G  + A  VFD M  ++++   SM+ G++S G    A + FR+  E   V
Sbjct: 147 NSLLAFYAKLGMVADAERVFDGMPVRDIVTWNSMVDGYVSNGLGALALDCFREMHEGLQV 206

Query: 250 VYNAMIEGYSISIETARKAL----EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARR 305
            ++ +    +++      AL    EVH  +I++   +DVK+G++L+DMY KCG I  A  
Sbjct: 207 QHDGVGIIAALAACCLDSALMQGREVHAYVIRHGLEQDVKVGTSLLDMYCKCGAIASAEG 266

Query: 306 VFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365
           +F  M  + V TW  MI GY  NG P +A + F  M+    Q   VT +  L+AC     
Sbjct: 267 MFATMPSRTVVTWNCMIGGYALNGCPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTES 326

Query: 366 VDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
              GR +   + R   + P +     ++++  + G ++ +     +M  K
Sbjct: 327 SLYGRSVHGYVTRSQFL-PHVVLETALLEMYSKVGKVKSSETIFGQMTNK 375


>gi|297734415|emb|CBI15662.3| unnamed protein product [Vitis vinifera]
          Length = 657

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 138/413 (33%), Positives = 235/413 (56%), Gaps = 9/413 (2%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           K+  ++  +G+ P+  +  ++L++H+KCG +  A ++FDE+P++ + ++N +I G +  G
Sbjct: 152 KVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRLFDEMPEKNILSWNTIIGGLVDAG 211

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              E+  L   +           F  +++AS             GR +H+  LK  V  D
Sbjct: 212 DYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLGLIFA-----GRQLHSCSLKTGVGGD 266

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             +  AL+D Y K G    A+ VFD M EK  +   S+I+G+   G+ E+A  ++ +  +
Sbjct: 267 VFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGYALHGYSEEALSMYYEMRD 326

Query: 246 KDIVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
             + + N   ++I      + +   A + H  L+++ F  D+   +ALVD+Y+K G+I+D
Sbjct: 327 SGVKIDNFTFSIIIRICARLASLEHAKQAHAGLVRHGFGLDIVANTALVDLYSKWGRIED 386

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           A+ VFD M  KNV +W ++I GYG +G   +A+E+F  M    + PN+VTFL  LSAC +
Sbjct: 387 AKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFERMLHEGMVPNHVTFLAVLSACSY 446

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
           +GL D+G EIFESM RD+ +KP+  HYACM++LLGR G L++A   + + P KP  ++WA
Sbjct: 447 SGLSDRGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEAFALIKDAPFKPTVNMWA 506

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
           ALL++CR+H + E+   AA +++ +   ++   YV L N    +G+ +    L
Sbjct: 507 ALLTACRVHKNFELGKFAAEKLYGMGP-EKLSNYVVLLNIYNRSGRLEEAAAL 558



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 97/358 (27%), Positives = 175/358 (48%), Gaps = 51/358 (14%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           F G ++H+   KTGV  +  ++  L+ ++ KCG+++ A  +FD++P++T   +N +IAGY
Sbjct: 249 FAGRQLHSCSLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVGWNSIIAGY 308

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
             +G  EE+LS+  ++  SG + D +TFS+I++    C     L     +  HA +++  
Sbjct: 309 ALHGYSEEALSMYYEMRDSGVKIDNFTFSIIIR---ICARLASLEH--AKQAHAGLVRHG 363

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
              D V  TALVD Y K G+   A+ VFDMM  KNVI   ++I+G+ + G   +A E+F 
Sbjct: 364 FGLDIVANTALVDLYSKWGRIEDAKHVFDMMPHKNVISWNALIAGYGNHGRGVEAVEMFE 423

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
           + + + +V                      H   +            A++   +  G  D
Sbjct: 424 RMLHEGMV--------------------PNHVTFL------------AVLSACSYSGLSD 451

Query: 302 DARRVF-----DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
               +F     DH  +     +  MI+  G+ G  ++A   F ++++   +P    +   
Sbjct: 452 RGWEIFESMSRDHKIKPRAMHYACMIELLGREGLLDEA---FALIKDAPFKPTVNMWAAL 508

Query: 357 LSACGHAGLVDKGREIFE-SMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEM 412
           L+AC     V K  E+ + + E+ Y M P K+ +Y  ++++  R+G LE+A   +LE+
Sbjct: 509 LTAC----RVHKNFELGKFAAEKLYGMGPEKLSNYVVLLNIYNRSGRLEEAAALMLEI 562



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 55/195 (28%), Positives = 95/195 (48%), Gaps = 11/195 (5%)

Query: 247 DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRV 306
           D   Y+A++    I +++ R   +V   +I +    D  L + ++ M+ KCG + DARR+
Sbjct: 130 DSETYDALVSA-CIGLKSIRGVKKVFNYMINSGLDPDEYLRNRVLLMHVKCGMMIDARRL 188

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           FD M +KN+ +W ++I G    G+  +A  LF MM +         F+  + A    GL+
Sbjct: 189 FDEMPEKNILSWNTIIGGLVDAGDYFEAFRLFLMMWQDFSDAGSRMFVTMIRASAGLGLI 248

Query: 367 DKGREIFESMERDYSMKPKME---HYAC-MVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
             GR++        S+K  +      AC ++D+  + GS+E A     +MPEK     W 
Sbjct: 249 FAGRQLHSC-----SLKTGVGGDVFVACALIDMYSKCGSIEDAQCVFDQMPEKTTVG-WN 302

Query: 423 ALLSSCRLHDDVEMA 437
           ++++   LH   E A
Sbjct: 303 SIIAGYALHGYSEEA 317


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 157/435 (36%), Positives = 240/435 (55%), Gaps = 13/435 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+ I     K G   +  +   L  L+ KCG ++ A  +F ++ Q  L +YN MI+GY  
Sbjct: 226 GMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTC 285

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR-NLGRMVHAQILKCDV 182
           N + E S+ L ++L+ SGE+ +  +   ++          P    +L R +H    K  V
Sbjct: 286 NNETESSVRLFKELLVSGEKVNSSSIVGLIPVF------FPFGHLHLTRCIHGFCTKSGV 339

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            ++  + TAL   Y +  +   AR++FD   EK++    +MISG+   G  E A  +F++
Sbjct: 340 VSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQE 399

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCG 298
            ++K  V  N +     +S      AL     VH  + +  F  ++ + +AL+DMYAKCG
Sbjct: 400 -MQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFESNIFVSTALIDMYAKCG 458

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            I +A+R+F  M +KN  TW +MI GYG +G  ++AL LF  M    V P  VTFL  L 
Sbjct: 459 SITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLY 518

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC HAGLV +G EIF SM  D+  +P  EHYACMVDLLGRAG+L++AL F+ +MP +P  
Sbjct: 519 ACSHAGLVREGDEIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGP 578

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            VW ALL +C +H D  +A +A++++F+L+  +  G YV LSN  +A   +     +R  
Sbjct: 579 PVWGALLGACMIHKDANLARLASDKLFELDPQN-VGYYVLLSNIYSAGQNYPEAASVRGV 637

Query: 479 MKLRGVLKDTGCSWV 493
           +K R + K  GC+ +
Sbjct: 638 VKRRKLAKTPGCTLI 652



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 168/346 (48%), Gaps = 12/346 (3%)

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149
           + K   +  A ++FD + +R    +N M++G +KN   +E++ +   +V  G   D  T 
Sbjct: 151 YFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTV 210

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVF 209
           + +L      +        LG  +    +K    +   + T L   Y K G+   AR++F
Sbjct: 211 AAVLPGVAELQD-----LALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLF 265

Query: 210 DMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL 269
             + + +++   +MISG+      E +  +F++ +     V ++ I G  I +      L
Sbjct: 266 GQIGQPDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGL-IPVFFPFGHL 324

Query: 270 E----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
                +H    K+    +  + +AL  +Y++  +I+ AR +FD   +K++ +W +MI GY
Sbjct: 325 HLTRCIHGFCTKSGVVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGY 384

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
            +NG   +A+ LF  MQ+C V+PN VT    LSAC   G +  G+ + + + R+ S +  
Sbjct: 385 AQNGLTEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRE-SFESN 443

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           +     ++D+  + GS+ +A +    MPEK N+  W A++S   LH
Sbjct: 444 IFVSTALIDMYAKCGSITEAQRLFSMMPEK-NAVTWNAMISGYGLH 488



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 130/280 (46%), Gaps = 18/280 (6%)

Query: 66  KIHAHITKTGVKPNTNISIKLL--ILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           + HA I   G+  +     KL   + HLK  A+  A  +F  +P   L  YN +I  +  
Sbjct: 28  QTHAQIILNGLHNDLVTVTKLTHKLSHLK--AIDQASLLFSTIPNPDLFLYNVLIRAFSL 85

Query: 124 NGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           N     ++SL   L  S    PD +T++ ++  ++     +        ++HA  +    
Sbjct: 86  NNSPSSAVSLYTHLRKSTPLEPDNFTYAFVISGASSLGLGL--------LLHAHSIVAGF 137

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            +D  + +A+V  Y K  + + AR VFD MLE++ +   +M+SG +     ++A  IF  
Sbjct: 138 GSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGD 197

Query: 243 TVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
            V+  I        A++ G +  ++     + + C  +K  F     + + L  +Y+KCG
Sbjct: 198 MVKGGIGFDSTTVAAVLPGVA-ELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCG 256

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
           +I+ AR +F  + Q ++ ++ +MI GY  N     ++ LF
Sbjct: 257 EIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVRLF 296


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 152/502 (30%), Positives = 263/502 (52%), Gaps = 52/502 (10%)

Query: 26  NQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIK 85
           NQ F P         N +T  S+ SA     + +   +G  +HA I +     +      
Sbjct: 239 NQGFRP---------NSMTYASVLSACTSIYDLE---WGAHLHARIVRMEPCLDVYAGCG 286

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           L+ ++ KCG L+ A Q+FD L +    ++  +I G  + G  EE+L L  ++       D
Sbjct: 287 LIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASD 346

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
            +T + +L     C S   +  ++G  +HA  +   + +   +  ALV  Y K G    A
Sbjct: 347 QFTLATVLGV---CLSQKDI--SIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKA 401

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMI---------- 255
              F++M  +++I  T+MI+ F   G VE A E F K  E++++ +N+M+          
Sbjct: 402 NHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWE 461

Query: 256 EGYSISIETARKAL------------------------EVHCQLIKNVFFEDVKLGSALV 291
           EG  + I+  R+ +                        ++  Q  K  F  +V + +++V
Sbjct: 462 EGLKVYIQMLREGVKTDWITFSTSISACADLAVLILGNQILAQAEKLGFSSNVSVANSVV 521

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
            MY++CG+I++A+++F  +  KN+ +W +M+ GY +NG   + +E+F  M      P+ +
Sbjct: 522 TMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQI 581

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
           +++  LS C H+G V +G+  F SM +D+ + P  EH+ CMVDLLGRAG LEQA   + +
Sbjct: 582 SYVSVLSGCSHSGFVSEGQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQ 641

Query: 412 MPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471
           MP KPN+ +W ALL++CR+H + ++A +A   + +L+A + PG+Y  L+N  + +GK   
Sbjct: 642 MPFKPNAAIWGALLAACRIHGNTKLAELAVKNLLELDA-EGPGSYCLLANIYSESGKIQG 700

Query: 472 VTELREKMKLRGVLKDTGCSWV 493
           VT +R+ M+ +GV K+ GCSW+
Sbjct: 701 VTNVRKLMRDKGVRKNPGCSWI 722



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 108/428 (25%), Positives = 182/428 (42%), Gaps = 72/428 (16%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
            L++H    K     +T +   +L +++KCGA+ +A ++F   P  +L  +N MI GY K
Sbjct: 133 ALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSK 192

Query: 124 NGQVEESLSLVRK-------------------------------LVSSGERPDGYTFSMI 152
            G V+++L L  K                               + + G RP+  T++ +
Sbjct: 193 YGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASV 252

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L A   C S   L    G  +HA+I++ +   D      L+D Y K G+   AR VFD +
Sbjct: 253 LSA---CTSIYDL--EWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGL 307

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN---AMIEGYSISIETARKAL 269
            E N +  TS+I G    GF E+A  +F +  E  +       A + G  +S +      
Sbjct: 308 TEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGE 367

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKC-------------------------------G 298
           ++H   I       V + +ALV MYAKC                               G
Sbjct: 368 QLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAG 427

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            ++ AR  FD M ++NV +W SM+  Y + G   + L+++  M    V+ +++TF  ++S
Sbjct: 428 DVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWITFSTSIS 487

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC    ++  G +I    E+       +     +V +  R G +E+A K    +  K N 
Sbjct: 488 ACADLAVLILGNQILAQAEK-LGFSSNVSVANSVVTMYSRCGQIEEAQKMFSSIVMK-NL 545

Query: 419 DVWAALLS 426
             W A+++
Sbjct: 546 VSWNAMMA 553



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 113/437 (25%), Positives = 187/437 (42%), Gaps = 83/437 (18%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           K+HA +   G+K +  +   LL ++  CG +  A ++F  +    + ++N MI+G+  +G
Sbjct: 25  KLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSWNTMISGFADSG 84

Query: 126 QVEESLSLVRKL-----VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
           Q+ E+  L  K+     VS      GY  +  L+A+     ++   + L   +H    K 
Sbjct: 85  QMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLGYLK-LALQLHGFAEKF 143

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
           D   D  + T+++D Y+K G   +A+ VF      ++ C  SMI G+   G V+ A E+F
Sbjct: 144 DFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELF 203

Query: 241 RKTVEKDIVVYNAMI---EGYSISIETARKALE--------------------------- 270
            K  E+D V +N MI     +    ET    LE                           
Sbjct: 204 AKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLE 263

Query: 271 ----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
               +H ++++     DV  G  L+DMYAKCG+++ AR+VFD + + N  +WTS+I G  
Sbjct: 264 WGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVA 323

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSAC-------------------------- 360
           + G   +AL LF  M+E  V  +  T    L  C                          
Sbjct: 324 QAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLDSSVP 383

Query: 361 ---------GHAGLVDKGREIFESME-RDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410
                       G V K    FE M  RD      +  +  M+    +AG +E+A ++  
Sbjct: 384 VANALVTMYAKCGDVWKANHAFELMPIRD------IISWTAMITAFSQAGDVEKAREYFD 437

Query: 411 EMPEKPNSDVWAALLSS 427
           +MPE+ N   W ++L++
Sbjct: 438 KMPER-NVISWNSMLAT 453



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 92/312 (29%), Positives = 148/312 (47%), Gaps = 51/312 (16%)

Query: 159 CRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI 218
           C S   +P  + R +HAQ++   +K+   L   L++ Y   G  S A  VF  ++  NV 
Sbjct: 14  CASLRSIP--IARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVY 71

Query: 219 CSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY------------SISIETAR 266
              +MISGF   G + +AE++F K  E+D V +N+M+ GY            S S+   +
Sbjct: 72  SWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLGYLK 131

Query: 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
            AL++H    K  F  D  + ++++DMY KCG +D A++VF      ++F W SMI GY 
Sbjct: 132 LALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYS 191

Query: 327 KNGNPNQALELFCMMQE-------------------------------CCVQPNYVTFLG 355
           K G+  +ALELF  M E                                  +PN +T+  
Sbjct: 192 KYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYAS 251

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA-C-MVDLLGRAGSLEQALKFVLEMP 413
            LSAC     ++ G  +   + R   M+P ++ YA C ++D+  + G LE A + V +  
Sbjct: 252 VLSACTSIYDLEWGAHLHARIVR---MEPCLDVYAGCGLIDMYAKCGRLESARQ-VFDGL 307

Query: 414 EKPNSDVWAALL 425
            + N+  W +L+
Sbjct: 308 TEHNAVSWTSLI 319


>gi|449445033|ref|XP_004140278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Cucumis sativus]
          Length = 679

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 171/539 (31%), Positives = 263/539 (48%), Gaps = 70/539 (12%)

Query: 13  SSTHNRHYTLVPPNQTFPPK-----------LQNYDSLSNPLTATSLPSAL------QHY 55
           S + + H   VPP  + P K           LQN   L  PL+A   P  L      Q  
Sbjct: 24  SYSGSAHIDTVPPPSSPPFKCSISPLTISATLQN---LLQPLSAPGPPPILSYAPVFQFL 80

Query: 56  INSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYN 115
              +    G ++HAH+   G++P   +  K++  +   G +  +  +F+ + + +   +N
Sbjct: 81  TGLNMLKLGHQVHAHMLLRGLQPTALVGSKMVAFYASSGDIDSSVSVFNGIGEPSSLLFN 140

Query: 116 YMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA 175
            MI  Y + G  E +++    + S G   D +TF  +LK+S        L   +G+ VH 
Sbjct: 141 SMIRAYARYGFAERTVATYFSMHSWGFTGDYFTFPFVLKSSVEL-----LSVWMGKCVHG 195

Query: 176 QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
            IL+  ++ D  + T+L+  Y K G+ + A  VFD M  ++V    ++++G+   G ++ 
Sbjct: 196 LILRIGLQFDLYVATSLIILYGKCGEINDAGKVFDNMTIRDVSSWNALLAGYTKSGCIDA 255

Query: 236 AEEIFRKTVEKDIVVYNAMIEGYSIS---------------------------------- 261
           A  IF +   ++IV +  MI GYS S                                  
Sbjct: 256 ALAIFERMPWRNIVSWTTMISGYSQSGLAQQALSLFDEMVKEDSGVRPNWVTIMSVLPAC 315

Query: 262 -----IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ--QKN 314
                +E  R+  E+ C++  N    +  +  AL  MYAKCG + DAR  FD +   +KN
Sbjct: 316 AQLSTLERGRQIHELACRMGLN---SNASVLIALTAMYAKCGSLVDARNCFDKLNRNEKN 372

Query: 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374
           +  W +MI  Y   G+  QA+  F  M +  +QP+ +TF G LS C H+GLVD G + F 
Sbjct: 373 LIAWNTMITAYASYGHGLQAVSTFREMIQAGIQPDDITFTGLLSGCSHSGLVDVGLKYFN 432

Query: 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDV 434
            M   YS+ P++EHYAC+ DLLGRAG L +A K V EMP      +W +LL++CR H ++
Sbjct: 433 HMSTTYSINPRVEHYACVADLLGRAGRLAEASKLVGEMPMPAGPSIWGSLLAACRKHRNL 492

Query: 435 EMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           EMA  AA ++F L   +  G YV LSN  A AG+W  V +LR  +K +G  K  GCSW+
Sbjct: 493 EMAETAARKLFVLEPENT-GNYVLLSNMYAEAGRWQEVDKLRAIVKSQGTKKSPGCSWI 550


>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
          Length = 667

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 151/439 (34%), Positives = 242/439 (55%), Gaps = 15/439 (3%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G ++HA I K     +  I   LL ++ + G +  A ++FD +P R L  +N MI+ Y 
Sbjct: 161 FGQQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKVFDGMPSRGLVTWNAMISCYS 220

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           K G+ ++S+ L R+L   G   D YT++++L      R  V         VH+ I++   
Sbjct: 221 KYGRGDKSIGLFRQLXREGISADEYTYAIVLN-EFAARWQVFEAMQ----VHSLIIERGF 275

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            +D     ALV+ Y K G  + A  +F+ + +++V+  T +I GF+  G +E+A  +F +
Sbjct: 276 CSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGFLQSGHMEEAMWLFYQ 335

Query: 243 T----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIK-NVFFEDVKLGSALVDMYAKC 297
                +E +   +  ++ G        +K    H  ++K  +   DV +GSA+VDMY+KC
Sbjct: 336 MQLGDIEPNSFTFGGLL-GACADANAFQKGRHFHGLVLKFGLLGADVVVGSAVVDMYSKC 394

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF---CMMQECCVQPNYVTFL 354
           G++ DA R F  M ++++ +W  +I GY +NG   +AL+L+    ++    + PN VTF+
Sbjct: 395 GEMGDALRAFQEMPERDIASWNGIICGYAQNGAGMKALKLYNEMVLLGPSGIAPNEVTFV 454

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
           G L AC H GL+ +G   F+ M   + +KP  EHY CMVDLLGRAG L++A   +L +P 
Sbjct: 455 GVLCACSHNGLLKEGYSYFKEMVDKHLIKPTAEHYTCMVDLLGRAGLLQEAEALILALPI 514

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
           KP++ +W ALL +C+LH DV+M    A  ++  N       YV L+N+    G+W    E
Sbjct: 515 KPDNVMWGALLGACKLHGDVQMTRRTAEHLYT-NEPRNSSNYVLLANSYTDIGEWGEAVE 573

Query: 475 LREKMKLRGVLKDTGCSWV 493
           +RE M+ RGV K  GCSWV
Sbjct: 574 IREVMEARGVEKTAGCSWV 592



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 186/369 (50%), Gaps = 20/369 (5%)

Query: 52  LQHYINSDTPFYGLKI-HAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRT 110
           LQ YINS       K+ H     + V  NT     +L  + K G +  A ++FD   +R 
Sbjct: 57  LQAYINSQALSDAHKLLHFMPQPSVVSYNT-----ILSGYFKFGLVSEAIKLFDGTSKRD 111

Query: 111 LSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLG 170
             ++N +++G +KN ++ E L+   K+  S  RPD +T+++I+    CC          G
Sbjct: 112 CHSWNIVLSGCVKNHKLGEGLTHFMKMRCSSVRPDNFTYAIIIP---CC------DLGFG 162

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           + VHA I+K     D  + T L+  Y + G+   AR VFD M  + ++   +MIS +   
Sbjct: 163 QQVHADIVKVCSDLDAFIGTNLLRMYAEVGEIGDARKVFDGMPSRGLVTWNAMISCYSKY 222

Query: 231 GFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
           G  + +  +FR+     +  D   Y  ++  ++   +   +A++VH  +I+  F  D   
Sbjct: 223 GRGDKSIGLFRQLXREGISADEYTYAIVLNEFAARWQVF-EAMQVHSLIIERGFCSDRFT 281

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
            +ALV++Y+KCG +  A R+F+ +  ++V +WT +I G+ ++G+  +A+ LF  MQ   +
Sbjct: 282 NNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGFLQSGHMEEAMWLFYQMQLGDI 341

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
           +PN  TF G L AC  A    KGR     + +   +   +   + +VD+  + G +  AL
Sbjct: 342 EPNSFTFGGLLGACADANAFQKGRHFHGLVLKFGLLGADVVVGSAVVDMYSKCGEMGDAL 401

Query: 407 KFVLEMPEK 415
           +   EMPE+
Sbjct: 402 RAFQEMPER 410



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 96/184 (52%), Gaps = 6/184 (3%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           F  +++H+ I + G   +   +  L+ L+ KCG +  A ++F+E+P + + ++  +I G+
Sbjct: 261 FEAMQVHSLIIERGFCSDRFTNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGF 320

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           L++G +EE++ L  ++      P+ +TF  +L A  C  +N       GR  H  +LK  
Sbjct: 321 LQSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGA--CADANA---FQKGRHFHGLVLKFG 375

Query: 182 -VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
            + AD V+ +A+VD Y K G+   A   F  M E+++     +I G+   G    A +++
Sbjct: 376 LLGADVVVGSAVVDMYSKCGEMGDALRAFQEMPERDIASWNGIICGYAQNGAGMKALKLY 435

Query: 241 RKTV 244
            + V
Sbjct: 436 NEMV 439



 Score = 39.7 bits (91), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 21/72 (29%), Positives = 38/72 (52%)

Query: 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
           KA  +H  L+KN     V   + L+  Y     + DA ++   M Q +V ++ +++ GY 
Sbjct: 33  KAPVLHASLVKNGLIAHVYQCNILLQAYINSQALSDAHKLLHFMPQPSVVSYNTILSGYF 92

Query: 327 KNGNPNQALELF 338
           K G  ++A++LF
Sbjct: 93  KFGLVSEAIKLF 104


>gi|345505234|gb|AEN99841.1| chlororespiratory reduction 4, partial [Raphanus sativus]
          Length = 577

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 147/472 (31%), Positives = 241/472 (51%), Gaps = 60/472 (12%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+++H  + K+    +  +   L+ L+LKCG L +A Q+FD +PQR   +YN MI GY+K
Sbjct: 112 GMQVHGFLIKSRTWSDLFLQNCLIGLYLKCGCLGFARQVFDRMPQRDSVSYNSMIDGYVK 171

Query: 124 NGQVEESLSLV-------RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
            G VE +  L        R L++      GY                   R  G  V ++
Sbjct: 172 CGLVESAGELFDLMPREKRNLITWNSMIGGYA-----------------QRADGVNVASK 214

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
           +     + D + + +++  YVK G+   A+ +FD+M  ++V+    MI G+   G V  A
Sbjct: 215 LFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYGKLGLVHQA 274

Query: 237 EEIFRKTVEKDIVVYNAMIEGY---------------------------------SISIE 263
           + +F +   +D+V YN+M+ G+                                 S   +
Sbjct: 275 KTLFDQMPHRDVVAYNSMMSGFVQNRYHIEALEVFNHMEKESHLSPDETTLVIVLSAIAQ 334

Query: 264 TAR--KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
             R  KA+++H  +++  F    KLG AL+DMY+KCG I  A RVF+ ++ K++  W +M
Sbjct: 335 LGRLTKAIDMHLYIVEKRFLLSGKLGVALIDMYSKCGSIQHAMRVFEGIESKSIDHWNAM 394

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           I G   +G    A ++   ++   ++P+++TF+G L+AC H+GLV +G   FE M R + 
Sbjct: 395 IGGLAVHGLGESAFDMLLQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHK 454

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441
           ++P+++HY CMVD+L R+GS+E A   + EMP +PN  +W   L++C  H + E   + A
Sbjct: 455 IEPRLQHYGCMVDILARSGSIELAKNLIEEMPIEPNDVIWRTFLNACSHHKEFETGELVA 514

Query: 442 NEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             +  L A   P +YV LSN  A+ G W  V  +R  MK + + K  GCSW+
Sbjct: 515 KHLI-LQAGYNPSSYVLLSNMYASNGMWKDVRRVRTMMKEKKIEKLPGCSWI 565



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 65/258 (25%), Positives = 113/258 (43%), Gaps = 57/258 (22%)

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
           D  L+ A++ S+  G     A ++F +MLE  V+     +S                   
Sbjct: 57  DPFLWNAVIKSHSHGADPRKALLLFCLMLENGVLVDKFSMS------------------- 97

Query: 245 EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDAR 304
              +V+      G+      A++ ++VH  LIK+  + D+ L + L+ +Y KCG +  AR
Sbjct: 98  ---LVLKACSRLGF------AKEGMQVHGFLIKSRTWSDLFLQNCLIGLYLKCGCLGFAR 148

Query: 305 RVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH-A 363
           +VFD M Q++  ++ SMIDGY K G    A ELF +M     + N +T+   +      A
Sbjct: 149 QVFDRMPQRDSVSYNSMIDGYVKCGLVESAGELFDLMPR--EKRNLITWNSMIGGYAQRA 206

Query: 364 GLVDKGREIFESM-ERD-----------------------YSMKPKME--HYACMVDLLG 397
             V+   ++F+ M E+D                       + + P+ +   +A M+D  G
Sbjct: 207 DGVNVASKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFDVMPRRDVVTWAIMIDGYG 266

Query: 398 RAGSLEQALKFVLEMPEK 415
           + G + QA     +MP +
Sbjct: 267 KLGLVHQAKTLFDQMPHR 284



 Score = 43.5 bits (101), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 55/124 (44%), Gaps = 5/124 (4%)

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           +A+C   +   R     + K+ F W ++I  +    +P +AL LFC+M E  V  +  + 
Sbjct: 37  FARCVFHEYHSRSVSPGEIKDPFLWNAVIKSHSHGADPRKALLLFCLMLENGVLVDKFSM 96

Query: 354 LGALSACGHAGLVDKGREI--FESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
              L AC   G   +G ++  F    R +S    +    C++ L  + G L  A +    
Sbjct: 97  SLVLKACSRLGFAKEGMQVHGFLIKSRTWS---DLFLQNCLIGLYLKCGCLGFARQVFDR 153

Query: 412 MPEK 415
           MP++
Sbjct: 154 MPQR 157


>gi|224091821|ref|XP_002309359.1| predicted protein [Populus trichocarpa]
 gi|222855335|gb|EEE92882.1| predicted protein [Populus trichocarpa]
          Length = 605

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 154/435 (35%), Positives = 242/435 (55%), Gaps = 13/435 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++I     K G   + ++   L+ L  KCG ++ A  +F E+ ++ L + N MI+G+  
Sbjct: 50  GMQILCLAIKCGFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTC 109

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRN-LGRMVHAQILKCDV 182
           NG+ E+S+ L ++L+SSGER    T   ++   +      P   + L   +H   +K  +
Sbjct: 110 NGETEDSVRLFKELLSSGERVSSSTIVGLIPVYS------PFGHSYLCNCIHGFCVKLGI 163

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            +   + TAL   Y +  +  +AR +FD   EK +    +MISG    G  + A  +F+ 
Sbjct: 164 VSHSSVSTALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQ- 222

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCG 298
           T++K+ V  N +     +S      AL     VH  +  N F  +V + +AL+DMYAKCG
Sbjct: 223 TMQKNNVNPNPVTVTSILSACAQIGALSLGEWVHSLIKSNRFESNVYVSTALIDMYAKCG 282

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            I  AR +FD M +KN  TW +MI GYG +G+  +AL+LF  M    V+P  +TFL  L 
Sbjct: 283 SITVARELFDLMPEKNEVTWNAMISGYGLHGHGQEALKLFYDMLSSSVKPTGLTFLSVLY 342

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC HAGLV +G  IF +M  D+  +P  EHYACMVD+LGRAG L++AL+F+  MP +P  
Sbjct: 343 ACSHAGLVKEGDGIFHTMVHDFGFEPLAEHYACMVDILGRAGQLKKALEFIKAMPVEPGP 402

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            VW ALL +C +H D  +A++A+ ++F+L+  +  G YV +SN  +   K+     +R+ 
Sbjct: 403 PVWGALLGACMIHKDTNLAHVASEKLFELDP-ENIGYYVLMSNIYSVERKYPQAASVRQV 461

Query: 479 MKLRGVLKDTGCSWV 493
            K + + K  GC+ +
Sbjct: 462 AKKKRLAKTPGCTLI 476



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 154/324 (47%), Gaps = 21/324 (6%)

Query: 117 MIAGYLKNGQVEESLSLVRKLV-SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA 175
           MI+G++KN   E+S+ +   +V  +G R D  T   +L A    +        LG  +  
Sbjct: 1   MISGFVKNSCFEDSIRVFGDMVLGNGPRFDLTTVIAVLPAVAELQE-----LKLGMQILC 55

Query: 176 QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
             +KC   +   L T L+  + K G+   AR++F  + +K++I   +MISGF   G  ED
Sbjct: 56  LAIKCGFYSHVSLLTGLISLFSKCGEVEIARLLFGEIRKKDLISCNAMISGFTCNGETED 115

Query: 236 AEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG-------- 287
           +  +F++ +     V ++ I G  I + +       H  L   +    VKLG        
Sbjct: 116 SVRLFKELLSSGERVSSSTIVGL-IPVYSPFG----HSYLCNCIHGFCVKLGIVSHSSVS 170

Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347
           +AL  +Y +  ++  AR++FD   +K + +W +MI G  +NG  + A+ LF  MQ+  V 
Sbjct: 171 TALTTVYCRLNEMIFARQLFDESAEKTLASWNAMISGCTQNGLTDAAISLFQTMQKNNVN 230

Query: 348 PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALK 407
           PN VT    LSAC   G +  G E   S+ +    +  +     ++D+  + GS+  A +
Sbjct: 231 PNPVTVTSILSACAQIGALSLG-EWVHSLIKSNRFESNVYVSTALIDMYAKCGSITVARE 289

Query: 408 FVLEMPEKPNSDVWAALLSSCRLH 431
               MPEK N   W A++S   LH
Sbjct: 290 LFDLMPEK-NEVTWNAMISGYGLH 312


>gi|297834310|ref|XP_002885037.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330877|gb|EFH61296.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 690

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 161/490 (32%), Positives = 260/490 (53%), Gaps = 39/490 (7%)

Query: 13  SSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHIT 72
           S+  +   TL+  + T P  L   ++ ++ L A     +L H         G+KI + + 
Sbjct: 101 STKLDEAVTLIEKSSTSPSNLSTPEAYTDLLHACISAKSLHH---------GIKICSLVL 151

Query: 73  KT-GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL---SAYNYMIAGYLKNGQVE 128
               ++ +  +  KL+ L   C  L  A ++FD++   +L     +  M  GY +NG   
Sbjct: 152 NNPSLRHDPKLLSKLITLFSVCRRLDLARKIFDDVTDSSLLTEKVWAAMAIGYSRNGSPR 211

Query: 129 ESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVL 188
           ++L +   ++ S   P  ++ S+ LKA    +        +GR +H QI+K   K D V+
Sbjct: 212 DALIVYVDMLCSFIEPGNFSISVALKACVDLKD-----LRVGRGIHGQIVKRKEKVDQVV 266

Query: 189 YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI 248
           Y  L+  Y++ G    AR VFD M E+N++   S+IS    +  V +   +FRK  E+ I
Sbjct: 267 YNVLLKLYMERGSFDDARKVFDGMSERNIVTWNSLISILSKKVRVHEMFNLFRKMQEEMI 326

Query: 249 VVYNAMIEGYSISIETARKAL-----EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
               A +   +I    +R A      E+H Q++K+    DV L ++L+DMY KCG ++ +
Sbjct: 327 GFSWATLT--TILPACSRVAALITGKEIHAQILKSKEKPDVPLLNSLMDMYGKCGDVEYS 384

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
           RRVFD M  K++ TW ++++ Y  NGN  + + LF  M E  V P+ +TF+  LS C   
Sbjct: 385 RRVFDGMLTKDLTTWNTILNCYAINGNIEEVINLFEWMIESGVAPDGITFVALLSGCSDT 444

Query: 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA 423
           GL + G  +FE M+ ++ + P +EHYAC+VD+LGRAG +E+A+K +  MP KP++ +W +
Sbjct: 445 GLTEYGISLFERMKTEFRVSPALEHYACLVDILGRAGKIEEAVKVIETMPFKPSASIWGS 504

Query: 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483
           LL+SCRLH +V +  I              G  + L   +A A  WD+V ++RE MK RG
Sbjct: 505 LLNSCRLHGNVSVGEI--------------GTMLWLRTYIAEAKMWDNVDKIREMMKQRG 550

Query: 484 VLKDTGCSWV 493
           + K+ GCSWV
Sbjct: 551 IKKEAGCSWV 560


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 154/460 (33%), Positives = 256/460 (55%), Gaps = 36/460 (7%)

Query: 64  GLKIHAHITKTG-VKPNTNISIKLLILHLKCGALKYAGQMFDELPQ--RTLSAYNYMIAG 120
           G ++HA + K   +  N+ ++  L+ ++     + +A ++FD +P+  R L  +N MI G
Sbjct: 279 GREVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICG 338

Query: 121 YLKNGQV-EESLSLVRKL-VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
           Y ++G + EE++ L  ++   +G  P   T + +L A  C RS V   +     VH  ++
Sbjct: 339 YAQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPA--CARSEVFTGKE---AVHGYVV 393

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
           K D+ ++  +  AL+D Y + G+   A  +F M+  ++++   ++I+G + QG + +A +
Sbjct: 394 KRDMASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQ 453

Query: 239 IFRK-TVEKDIVVYNAMIEGYSISIETAR----------------------KALEVHCQL 275
           + R+  +         M+EG   S++  R                      +  E+H   
Sbjct: 454 LVREMQLPSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARGKEIHGYA 513

Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
           +++    D+ +GSALVDMYAKCG +  AR VFD + ++NV TW  +I  YG +G  ++AL
Sbjct: 514 VRHALESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEAL 573

Query: 336 ELF-CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394
            LF  M+      PN VTF+ AL+AC H+GLVD+G E+F+ M+RDY  +P    +AC+VD
Sbjct: 574 ALFDRMVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVD 633

Query: 395 LLGRAGSLEQALKFVLEM-PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRP 453
           +LGRAG L++A   +  M P +     W+ +L +CRLH +V++  IAA  +F+L   D  
Sbjct: 634 VLGRAGRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFELEP-DEA 692

Query: 454 GAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             YV L N  +AAG W++ TE+R  M+ RGV K+ GCSW+
Sbjct: 693 SHYVLLCNIYSAAGLWENSTEVRGMMRQRGVAKEPGCSWI 732



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 95/352 (26%), Positives = 169/352 (48%), Gaps = 41/352 (11%)

Query: 111 LSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLG 170
           L  +N MI+  ++ G+ EE++ ++  +V+ G RPDG TF+  L A  C R  +     +G
Sbjct: 225 LVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPA--CSRLEL---LGVG 279

Query: 171 RMVHAQILK-CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE--KNVICSTSMISGF 227
           R VHA +LK  D+ A+  + +ALVD Y    + S+AR VFDM+ E  + +    +MI G+
Sbjct: 280 REVHAFVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGY 339

Query: 228 MSQGFV-EDAEEIF-RKTVEKDIVVYNAMIEGY-----SISIETARKALEVHCQLIKNVF 280
              G + E+A E+F R   E         + G         + T ++A  VH  ++K   
Sbjct: 340 AQHGGMDEEAIELFSRMEAEAGCAPSETTMAGVLPACARSEVFTGKEA--VHGYVVKRDM 397

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             +  + +AL+DMYA+ G++D+A  +F  +  +++ +W ++I G    G  ++A +L   
Sbjct: 398 ASNRFVQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVRE 457

Query: 341 MQ---------------------ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD 379
           MQ                     + C+ PN +T +  L  C       +G+EI     R 
Sbjct: 458 MQLPSSAASGETMLEGDDTSVDGQRCM-PNNITLMTLLPGCAVLAAPARGKEIHGYAVR- 515

Query: 380 YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           ++++  +   + +VD+  + G L  A      +P + N   W  L+ +  +H
Sbjct: 516 HALESDLAVGSALVDMYAKCGCLALARAVFDRLPRR-NVITWNVLIMAYGMH 566



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/166 (26%), Positives = 78/166 (46%), Gaps = 6/166 (3%)

Query: 266 RKALEVHCQLIKNVFFEDVKLG---SALVDMYAKCGKIDDARRVF--DHMQQKNVFTWTS 320
           R   E H   +K+ F +  +     +AL+ MYA+ G +DDA+R+F        ++ TW +
Sbjct: 171 RLGREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGDLVTWNT 230

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
           MI    + G   +A+++   M    V+P+ VTF  AL AC    L+  GRE+   + +D 
Sbjct: 231 MISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHAFVLKDD 290

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS-DVWAALL 425
            +       + +VD+      +  A +    +PE      +W A++
Sbjct: 291 DLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMI 336



 Score = 59.3 bits (142), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 55/99 (55%), Gaps = 1/99 (1%)

Query: 60  TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIA 119
            P  G +IH +  +  ++ +  +   L+ ++ KCG L  A  +FD LP+R +  +N +I 
Sbjct: 502 APARGKEIHGYAVRHALESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVITWNVLIM 561

Query: 120 GYLKNGQVEESLSLVRKLVSSGE-RPDGYTFSMILKAST 157
            Y  +G  +E+L+L  ++V++GE  P+  TF   L A +
Sbjct: 562 AYGMHGLGDEALALFDRMVANGEATPNEVTFIAALAACS 600


>gi|449462338|ref|XP_004148898.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 675

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 158/469 (33%), Positives = 252/469 (53%), Gaps = 42/469 (8%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+ +H+ I K G   +  +   L+  +++ G L +A QMFDE   + +  +  MI GY +
Sbjct: 171 GMAVHSVIWKRGFDSDLFVQNGLIQNYVETGCLGFARQMFDESSVKDVVTWTTMINGYAR 230

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N  ++E+++L   ++SS  +P+  T  MI   S C +        +G+ +H  I + D+ 
Sbjct: 231 NNWLDEAIALFNSMLSSDVKPNEVT--MIALLSACSQKG---DSEMGKTLHEHIRRKDIT 285

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               L  A++D YVK G  + AR +F+ M  ++V   TS+++G+   G +  A ++F + 
Sbjct: 286 CSLNLLNAMLDMYVKCGCLTTAREIFNNMERRDVFSWTSLLNGYAKNGDLGSARKLFDEM 345

Query: 244 VEKDIVVYNAMIEGYS----------------------------ISIETARKAL------ 269
            E++IV +NAMI GYS                            + + +A   L      
Sbjct: 346 PERNIVSWNAMIAGYSQNSQPMEALELFHNMVDVVGLVPTEDTLVCVLSASGQLGCLEMG 405

Query: 270 -EVHCQLIKNVFFE-DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
            E+HC  +  +  +  + L +A++DMYAKCG ID A ++F  M +KN+ +W SMI  Y  
Sbjct: 406 QEIHCNHVNKIGIQVSLILKNAVMDMYAKCGSIDAAAKLFHSMPEKNLVSWNSMISAYAS 465

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
            G+  +AL LF  M    ++P+++TF+G LSAC + G V +G+  FESME  + ++PK E
Sbjct: 466 YGHAKKALTLFDQMIGSGLKPDHITFIGVLSACSYGGFVSEGQAHFESMENCFGVEPKRE 525

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           HYACMVDLL R G L++A + +  MP + +   W ALL +CR H +VEMA +A  ++ +L
Sbjct: 526 HYACMVDLLSRVGLLKEAYELISRMPMEASEGGWGALLDACRKHGNVEMAKLAGEKLLEL 585

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
           +  D  G Y  L+N  A   KW  V  +R  M+ RGV K  G S +  E
Sbjct: 586 DPEDS-GIYSLLANICADGKKWKDVRMVRRMMRERGVKKVPGHSLIEIE 633



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 116/447 (25%), Positives = 206/447 (46%), Gaps = 50/447 (11%)

Query: 20  YTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLK-IHAHITKTGVKP 78
           ++  P + +  P    ++SLSN   +   P+ L   + S +  + LK I AHIT TG+  
Sbjct: 27  HSFRPLSTSSSPGKPKWNSLSNVFISN--PTLL--ILQSCSSMFQLKQIQAHITCTGLMN 82

Query: 79  NTNISIKLLILHL--KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRK 136
               + +LL        G + YA  +FD+        +N MI GY K        S  R+
Sbjct: 83  QIFPASRLLAFCALSDSGDIHYAHLIFDQTELPNCFFWNTMIKGYCKANHPSMGFSFFRQ 142

Query: 137 LVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196
           ++ +    D  +F   LKA       +     +G  VH+ I K    +D  +   L+ +Y
Sbjct: 143 MIRNRAEFDSGSFVFALKACGQFAEKI-----VGMAVHSVIWKRGFDSDLFVQNGLIQNY 197

Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYN 252
           V+ G   +AR +FD    K+V+  T+MI+G+    ++++A  +F   +  D+    V   
Sbjct: 198 VETGCLGFARQMFDESSVKDVVTWTTMINGYARNNWLDEAIALFNSMLSSDVKPNEVTMI 257

Query: 253 AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ 312
           A++   S   ++      +H  + +      + L +A++DMY KCG +  AR +F++M++
Sbjct: 258 ALLSACSQKGDS-EMGKTLHEHIRRKDITCSLNLLNAMLDMYVKCGCLTTAREIFNNMER 316

Query: 313 KNVFTWTSMIDGYGKNGN-------------------------------PNQALELFCMM 341
           ++VF+WTS+++GY KNG+                               P +ALELF  M
Sbjct: 317 RDVFSWTSLLNGYAKNGDLGSARKLFDEMPERNIVSWNAMIAGYSQNSQPMEALELFHNM 376

Query: 342 QECC-VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
            +   + P   T +  LSA G  G ++ G+EI  +      ++  +     ++D+  + G
Sbjct: 377 VDVVGLVPTEDTLVCVLSASGQLGCLEMGQEIHCNHVNKIGIQVSLILKNAVMDMYAKCG 436

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSS 427
           S++ A K    MPEK N   W +++S+
Sbjct: 437 SIDAAAKLFHSMPEK-NLVSWNSMISA 462


>gi|359492783|ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
           [Vitis vinifera]
          Length = 575

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 158/473 (33%), Positives = 246/473 (52%), Gaps = 63/473 (13%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G  +HA   K GV  +  I   L+ ++ KCG +  + ++FD +P+R    +N MI GYL
Sbjct: 112 HGKALHAESIKNGVDFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYL 171

Query: 123 KNGQVEESLSL-----VRKLVSSGERPDGYTFSMILKASTCCRSNVPLP-RNLGRMVHAQ 176
            NG  + ++ L     +R  V+  E  DG+  S   + +     +VP   RN+       
Sbjct: 172 GNGDSKSAVLLFEKMSIRTAVTWIEMIDGFARSGDTETARRFFDDVPSELRNV------- 224

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
                     V +T +VD Y +  +   AR VF+ M ++N    +SMISG+  +G V++A
Sbjct: 225 ----------VTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEA 274

Query: 237 EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFED------------- 283
             IF +   +++V +N++I GY+ +   + +ALE   ++    F  D             
Sbjct: 275 RSIFDRIPVRNLVNWNSLISGYAQN-GFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQ 333

Query: 284 ------------------VKLG----SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
                             +KL     + LVDMYAKCG + +AR +F+ M  +N   W SM
Sbjct: 334 LGLLDAGKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSM 393

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           I G+  +G   +ALE F  M++    P+ +TFL  LSAC H G V+ G EIF  ME+ Y 
Sbjct: 394 ISGFAIHGQSKEALEFFGRMEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEK-YG 452

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441
           +   ++HY C++DLLGRAG +++A   +  MP KPN  VW ALL +CR+H D+EMA+   
Sbjct: 453 LTTGIKHYGCLIDLLGRAGRIKEAYDLIKRMPVKPNDVVWGALLGACRVHLDMEMADRVV 512

Query: 442 NEIFKLNANDRPGA---YVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
            EI K+++N   G    YV LSN  AA+ +W+   ++R +M  +G  K +GCS
Sbjct: 513 EEIVKVDSNISSGCDSHYVLLSNIYAASDRWEKAEKMRMEMANKGFQKTSGCS 565



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 57/206 (27%), Positives = 101/206 (49%), Gaps = 10/206 (4%)

Query: 223 MISGFMSQGFVEDAEEIFRKTVEKDIVVYNA--MIEGYSISIETARKALEVHCQLIKNVF 280
           +I  ++SQG   +A  ++     K + +     ++     S+   +    +H + IKN  
Sbjct: 66  LIRSYLSQGAPREALLVYTGLRRKGVYLLGVAPLVLKACASLSIVKHGKALHAESIKNGV 125

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             DV +G++LV MYAKCG + D+R+VFD+M ++N  TW +MI GY  NG+   A+ LF  
Sbjct: 126 DFDVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEK 185

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           M         VT++  +     +G  +  R  F+ +  +      +  +  MVD   R  
Sbjct: 186 MS----IRTAVTWIEMIDGFARSGDTETARRFFDDVPSELR---NVVTWTVMVDGYARNA 238

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLS 426
            +E A +    MP++ N   W++++S
Sbjct: 239 EMEAAREVFEGMPQR-NFFAWSSMIS 263


>gi|224079221|ref|XP_002305798.1| predicted protein [Populus trichocarpa]
 gi|222848762|gb|EEE86309.1| predicted protein [Populus trichocarpa]
          Length = 584

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 159/462 (34%), Positives = 249/462 (53%), Gaps = 32/462 (6%)

Query: 53  QHYINSDTPFYGL------------KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           QH+ +  +P Y L            ++HAH+  +G   +  +  KLL L    G++ Y  
Sbjct: 5   QHHKHPHSPAYNLLLQAGPRLKLLHQVHAHVIVSGYGCSRFLLTKLLNLACAAGSISYTR 64

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVE-ESLSLVRKLVSSGERPDGYTFSMILKASTCC 159
           Q+F  +P      +  +I    K       SL    ++V S   P  YTF+ ++K+   C
Sbjct: 65  QIFLIVPNPDSFLFTSLIRSTSKFHNFSVYSLYFYTRMVLSNVAPSNYTFTSVIKS---C 121

Query: 160 RSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVIC 219
              V L    GR++H  +L     +D  + TAL+  Y K G    AR VFD M +++V+ 
Sbjct: 122 ADLVALRH--GRIIHGHVLVNGFGSDVYVQTALMSFYGKCGVLCNARKVFDKMRDRSVVT 179

Query: 220 STSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE-------VH 272
             SMISG+   GF ++A  +F +  E  +   +A      +S+ +A   L        VH
Sbjct: 180 WNSMISGYEQNGFAKEAIRLFDRMKEIGVEPNSATF----VSVLSACAHLGAFILGCWVH 235

Query: 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPN 332
              + N    +V LG++L++MY +CG +  AR VFD M+++NV  WT+MI GYG NG  +
Sbjct: 236 EYAVGNGLDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVAWTAMISGYGTNGYGS 295

Query: 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACM 392
           QA+ELF  M+   + PN +TF+  LSAC HAGLV++GR +FESM  +Y + P++EH+ C+
Sbjct: 296 QAVELFHEMRRNGLLPNSITFVAVLSACAHAGLVNEGRRVFESMREEYRLVPEVEHHVCL 355

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEM-ANIAANEIFKLNAND 451
           VD+LGRAG L++A  F+ E+ E+P   +W A+L +C++H +  + A +A + +     N 
Sbjct: 356 VDMLGRAGLLDEAYNFIKEIHEEPAPAIWTAMLGACKMHKNFGLGAQVAEHRLASEPGN- 414

Query: 452 RPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            P  YV LSN  A AG+ D V  +R+ M  + + K  G S +
Sbjct: 415 -PAHYVILSNIYALAGRMDQVEMVRDNMIRKCLKKQVGYSTI 455


>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
 gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  263 bits (673), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 148/435 (34%), Positives = 249/435 (57%), Gaps = 13/435 (2%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G +IH    + G++ +  ++  L+ ++ K G    A  +F+++ ++ + ++N M+A + 
Sbjct: 228 FGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFA 287

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +N     ++ LVR++ + GE P+  TF+ +L A  C R     P   G+ +HA+ ++   
Sbjct: 288 QNRLELAAVDLVRQMQADGEIPNSVTFTNVLPA--CARIGFLRP---GKEIHARAIRTGS 342

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR- 241
             D  +  AL D Y K G  + AR VF + L ++ +    +I G+       ++  +F  
Sbjct: 343 SVDLFVSNALTDMYAKCGCLNLARRVFKISL-RDEVSYNILIIGYSQTTNCSESLRLFLE 401

Query: 242 ---KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
              K ++ D+V Y  +I   + ++   ++  EVH   ++      + + +AL+D Y KCG
Sbjct: 402 MGIKGMKLDVVSYMGVISACA-NLAALKQGKEVHGLAVRKHLHTHLFIANALLDFYIKCG 460

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           +ID A +VF  +  ++  +W SMI GYG  G    A+ LF  M+E  V+ + V+++  LS
Sbjct: 461 RIDLAGKVFRQIPSRDTASWNSMILGYGMLGELTIAINLFEAMKEDGVEYDSVSYIAVLS 520

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC H GLV++G++ FE M+   ++KP   HYACMVDLLGRAG +E+A+K +  +P +P++
Sbjct: 521 ACSHGGLVEEGKKYFEHMQVQ-NIKPTQMHYACMVDLLGRAGLIEEAVKLIESLPIEPDA 579

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
           +VW ALL +CR+H  +E+A+ AA  +FKL      G Y  LSN  A AGKWD   ++R+ 
Sbjct: 580 NVWGALLGACRIHGYIELAHWAAEHLFKLKPQ-HSGYYSVLSNMYAEAGKWDEANQVRKL 638

Query: 479 MKLRGVLKDTGCSWV 493
           MK RG  K+ GCSWV
Sbjct: 639 MKSRGAKKNPGCSWV 653



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/368 (25%), Positives = 192/368 (52%), Gaps = 17/368 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIA--GY 121
           G +IH ++ KTG+     +   L+ ++ KCG +K + ++FDE+ +R   ++N +I    Y
Sbjct: 128 GRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIITSLAY 187

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           L+  Q  ++L + R ++  G +P+  TFS +L      +       + G+ +H   L+  
Sbjct: 188 LERNQ--DALEMFRLMIDGGVKPNSVTFSSMLPVLVELK-----LFDFGKEIHGFSLRFG 240

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +++D  +  AL+D Y K G++  A  VF+ + EKN++   +M++ F +Q  +E A     
Sbjct: 241 LESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANF-AQNRLELAAVDLV 299

Query: 242 KTVEKDIVVYNAM----IEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           + ++ D  + N++    +      I   R   E+H + I+     D+ + +AL DMYAKC
Sbjct: 300 RQMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTDMYAKC 359

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G ++ ARRVF  +  ++  ++  +I GY +  N +++L LF  M    ++ + V+++G +
Sbjct: 360 GCLNLARRVFK-ISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVSYMGVI 418

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           SAC +   + +G+E+     R + +   +     ++D   + G ++ A K   ++P +  
Sbjct: 419 SACANLAALKQGKEVHGLAVRKH-LHTHLFIANALLDFYIKCGRIDLAGKVFRQIPSRDT 477

Query: 418 SDVWAALL 425
           +  W +++
Sbjct: 478 AS-WNSMI 484



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/331 (26%), Positives = 163/331 (49%), Gaps = 11/331 (3%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           + P  L+   +S +   G +IH  + K G   +  +   LL+ +  CG LK   ++FDE+
Sbjct: 9   TFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDVKRVFDEM 68

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKL-VSSGERPDGYTFSMILKASTCCRSNVPL 165
            +R + ++N +I  +  +G   E++ L  ++ + SG RP+  +   +L         V  
Sbjct: 69  LERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAGLEDGVT- 127

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
               GR +H  ++K  + +   +  ALVD Y K G    +R VFD + E+N +   ++I+
Sbjct: 128 ----GRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNAIIT 183

Query: 226 GFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFF 281
                   +DA E+FR  ++  +    V +++M+    + ++      E+H   ++    
Sbjct: 184 SLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLP-VLVELKLFDFGKEIHGFSLRFGLE 242

Query: 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM 341
            D+ + +AL+DMYAK G+   A  VF+ + +KN+ +W +M+  + +N     A++L   M
Sbjct: 243 SDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLVRQM 302

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           Q     PN VTF   L AC   G +  G+EI
Sbjct: 303 QADGEIPNSVTFTNVLPACARIGFLRPGKEI 333



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/333 (27%), Positives = 159/333 (47%), Gaps = 16/333 (4%)

Query: 141 GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGG 200
           G R D +TF  +LKA   C  ++ + +  GR +H  + K    +D  +   L+  Y   G
Sbjct: 2   GVRLDDHTFPFVLKA---CADSLSVQK--GREIHGVVFKLGFDSDVFVGNTLLLFYGNCG 56

Query: 201 KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-----RKTVEKDIVVYNAMI 255
                + VFD MLE++V+   S+I  F   GF  +A  +F     R     ++V   +++
Sbjct: 57  GLKDVKRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVL 116

Query: 256 EGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
                 +E      ++HC ++K      V +G+ALVD+Y KCG + D+RRVFD + ++N 
Sbjct: 117 P-VCAGLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNG 175

Query: 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES 375
            +W ++I           ALE+F +M +  V+PN VTF   L       L D G+EI   
Sbjct: 176 VSWNAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEI-HG 234

Query: 376 MERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVE 435
               + ++  +     ++D+  ++G   QA     ++ EK N   W A++++    + +E
Sbjct: 235 FSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEK-NIVSWNAMVANFA-QNRLE 292

Query: 436 MANIAANEIFKLNANDRPGAYVALSNTLAAAGK 468
           +A  A + + ++ A+      V  +N L A  +
Sbjct: 293 LA--AVDLVRQMQADGEIPNSVTFTNVLPACAR 323


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 150/444 (33%), Positives = 238/444 (53%), Gaps = 17/444 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           KIH  + K G++ +  I   L+  +LK G +++A   F+ELP R +  +N M+ GY + G
Sbjct: 157 KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIG 216

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           Q E  L   R++      P  +T +  L              N GR++H   +K    + 
Sbjct: 217 QFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGD-----LNNGRIIHGFAMKMGYDSG 271

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS----QGFVEDAEEIFR 241
             +  +L+D Y K      A  +F+MM EK++    S++S         G +   + +  
Sbjct: 272 VAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLG 331

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVF------FEDVKLGSALVDMYA 295
             ++ D+V    ++   S  +       E+H  +I +         +DV L +A++DMYA
Sbjct: 332 AGIQPDLVTVTTVLPACS-HLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYA 390

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KCG + DA  VF+ M  K+V +W  MI GYG +G  N+ALE+F  M E  ++P+ VTF+G
Sbjct: 391 KCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVG 450

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            LSAC HAG V +GR     M+  Y + P +EHY C++D+LGRAG L++A +  L MP +
Sbjct: 451 VLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIE 510

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
            N  VW ALL++CRLH    +A +AA  +F+L   +  G+YV +SN   A G+++ V E+
Sbjct: 511 ANPVVWRALLAACRLHKHAVLAEVAAQRVFELEP-EHCGSYVLMSNVYGAVGRYEEVLEV 569

Query: 476 REKMKLRGVLKDTGCSWVGTESGL 499
           R  M+ + V K  GCSW+  ++G+
Sbjct: 570 RHTMRQQNVRKTPGCSWIELKNGV 593



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 166/353 (47%), Gaps = 32/353 (9%)

Query: 101 QMFDELPQRTLSA-------------YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGY 147
           Q+  ELP  TL A             +N +I+G++ NG  EE     +K+ + G  PD +
Sbjct: 81  QLEIELPSNTLKAGENDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKF 140

Query: 148 TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARI 207
           TF   +KA   C   + + +     +H  + K  ++ D  + +ALV+ Y+K G   +A++
Sbjct: 141 TFPCAIKA---CLDVLEIKK-----IHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQV 192

Query: 208 VFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARK 267
            F+ +  ++V+   +M++G+   G  E   E FR+  ++ +V     + G  +S+     
Sbjct: 193 AFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTG-XLSVFAVMG 251

Query: 268 ALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMID 323
            L     +H   +K  +   V + ++L+DMY KC  I+DA  +F+ M++K++F+W S++ 
Sbjct: 252 DLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVS 311

Query: 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE-----IFESMER 378
            + + G+ +  L L   M    +QP+ VT    L AC H   +  GRE     I   + +
Sbjct: 312 VHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGK 371

Query: 379 DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           D      +     ++D+  + GS+  A   V E     +   W  ++    +H
Sbjct: 372 DGKDIDDVLLKNAVIDMYAKCGSMRDA-HLVFERMSNKDVASWNIMIMGYGMH 423



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 83/359 (23%), Positives = 154/359 (42%), Gaps = 61/359 (16%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH    K G      +S  L+ ++ KC  ++ A ++F+ + ++ + ++N +++ + +
Sbjct: 256 GRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQ 315

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G  + +L L+ +++ +G +PD  T + +L A +   + +      G M+ + + K    
Sbjct: 316 CGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKD 375

Query: 184 ADDVLY-TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            DDVL   A++D Y K G    A +VF+ M  K+V     MI G+   G+  +A E+F +
Sbjct: 376 IDDVLLKNAVIDMYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSR 435

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC---GK 299
             E  +                  K  EV                   V + + C   G 
Sbjct: 436 MCEVQL------------------KPDEV-----------------TFVGVLSACSHAGF 460

Query: 300 IDDARRVFDHMQQK-----NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           +   R     M+ K      +  +T +ID  G+ G  ++A EL   M    ++ N V + 
Sbjct: 461 VSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMP---IEANPVVWR 517

Query: 355 GALSAC---GHAGLVDKGREIFESMERDYSMKPKMEH---YACMVDLLGRAGSLEQALK 407
             L+AC    HA L +       + +R + ++P  EH   Y  M ++ G  G  E+ L+
Sbjct: 518 ALLAACRLHKHAVLAEV------AAQRVFELEP--EHCGSYVLMSNVYGAVGRYEEVLE 568


>gi|15241651|ref|NP_196468.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171895|sp|Q9FNN7.1|PP371_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g08510
 gi|9759345|dbj|BAB10000.1| unnamed protein product [Arabidopsis thaliana]
 gi|50897238|gb|AAT85758.1| At5g08510 [Arabidopsis thaliana]
 gi|332003930|gb|AED91313.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 511

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 156/463 (33%), Positives = 245/463 (52%), Gaps = 46/463 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++HAH  +TGV    ++  +LL++      L YA ++FD         YN +I  Y  + 
Sbjct: 6   QLHAHCLRTGVDETKDLLQRLLLI----PNLVYARKLFDHHQNSCTFLYNKLIQAYYVHH 61

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           Q  ES+ L   L   G RP  +TF+ I  AS    S  PL     R++H+Q  +   ++D
Sbjct: 62  QPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPL-----RLLHSQFFRSGFESD 116

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
               T L+ +Y K G    AR VFD M +++V    +MI+G+  +G ++ A E+F     
Sbjct: 117 SFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPR 176

Query: 246 KDIVVYNAMIEGYS------------ISIETARKALEVHCQLI----------------- 276
           K++  +  +I G+S            + +E  +     H  ++                 
Sbjct: 177 KNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRR 236

Query: 277 ------KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM-QQKNVFTWTSMIDGYGKNG 329
                 +N FF+++ + +A ++MY+KCG ID A+R+F+ +  Q+N+ +W SMI     +G
Sbjct: 237 LEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHG 296

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
             ++AL LF  M     +P+ VTF+G L AC H G+V KG+E+F+SME  + + PK+EHY
Sbjct: 297 KHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHY 356

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
            CM+DLLGR G L++A   +  MP KP++ VW  LL +C  H +VE+A IA+  +FKL  
Sbjct: 357 GCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALFKLEP 416

Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSW 492
            + PG  V +SN  AA  KWD V  +R+ MK   + K  G S+
Sbjct: 417 TN-PGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSY 458



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP-QRTLSAYNYMIAGYL 122
           G ++  +  + G   N  +    + ++ KCG +  A ++F+EL  QR L ++N MI    
Sbjct: 234 GRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLA 293

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
            +G+ +E+L+L  +++  GE+PD  TF  +L A
Sbjct: 294 THGKHDEALTLFAQMLREGEKPDAVTFVGLLLA 326


>gi|297740529|emb|CBI30711.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 149/453 (32%), Positives = 250/453 (55%), Gaps = 27/453 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH+ I    V+ +  +  KL+ +++ CG L+   ++FD++    +  +N ++ GY K
Sbjct: 120 GRRIHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNLLMNGYAK 179

Query: 124 NGQVEESLSLVRKLVSSGERP--------------DGYTFSMILKASTCCRSNVPLPRNL 169
            G   ESLSL +++   G R               D  +++ ++       SN    + L
Sbjct: 180 IGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYV---SNGLSEKGL 236

Query: 170 GRMVHAQILKCD------VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
                  +L  +      V  +  L   L+D Y K G  + A  VF+ M E++V+  TSM
Sbjct: 237 DLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVSWTSM 296

Query: 224 ISGFMSQGFVEDAEEIFRKTVEKDIV---VYNAMIEGYSISIETARKALEVHCQLIKNVF 280
           I+G+  +G  + +  +F +  ++D+    +  A I     S+    +  E+H  +++N F
Sbjct: 297 IAGYAREGLSDMSVRLFHEMEKEDLFPNSITMACILPACASLAALERGQEIHGHILRNGF 356

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             D  + +ALVDMY KCG +  AR +FD + +K++ +WT MI GYG +G  ++A+  F  
Sbjct: 357 SLDRHVANALVDMYLKCGALGLARLLFDMIPEKDLVSWTVMIAGYGMHGYGSEAIAAFNE 416

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           M+   ++P+ V+F+  L AC H+GL+D+G   F  M  +  ++PK EHYAC+VDLL RAG
Sbjct: 417 MRNSGIEPDEVSFISILYACSHSGLLDEGWGFFNMMRNNCCIEPKSEHYACIVDLLARAG 476

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
           +L +A KF+  MP +P++ +W ALL  CR++ DV++A   A  +F+L   +  G YV L+
Sbjct: 477 NLSKAYKFIKMMPIEPDATIWGALLCGCRIYHDVKLAEKVAEHVFELEPEN-TGYYVLLA 535

Query: 461 NTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           N  A A KW+ V +LRE++  RG+ K+ GCSW+
Sbjct: 536 NIYAEAEKWEEVKKLRERIGRRGLRKNPGCSWI 568



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/215 (26%), Positives = 100/215 (46%), Gaps = 35/215 (16%)

Query: 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
           SI+  R+   +H  +  N    D  LGS LV MY  CG + + RR+FD +  + VF W  
Sbjct: 116 SIQDGRR---IHSIIQSNDVEVDGVLGSKLVFMYVTCGDLREGRRIFDKVANEKVFLWNL 172

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQ--------------PNYVTFLGALSACGHAGLV 366
           +++GY K GN  ++L LF  M+E  ++               + +++   +S     GL 
Sbjct: 173 LMNGYAKIGNFRESLSLFKRMRELGIRRVESARKLFDELGDRDVISWNSMISGYVSNGLS 232

Query: 367 DKGREIFESM-----ERDYSMKPKMEHYA--CMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           +KG ++FE M       D +    +E     C++D+  ++G+L  A++    M E+    
Sbjct: 233 EKGLDLFEQMLLLGINTDLATMVSVELTLNNCLLDMYSKSGNLNSAIQVFETMGERSVVS 292

Query: 420 VWAALLS----------SCRLHDDVEMANIAANEI 444
            W ++++          S RL  ++E  ++  N I
Sbjct: 293 -WTSMIAGYAREGLSDMSVRLFHEMEKEDLFPNSI 326


>gi|39546235|emb|CAE04244.3| OSJNBa0089N06.5 [Oryza sativa Japonica Group]
 gi|125549842|gb|EAY95664.1| hypothetical protein OsI_17530 [Oryza sativa Indica Group]
 gi|215686910|dbj|BAG90780.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 559

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 148/421 (35%), Positives = 234/421 (55%), Gaps = 16/421 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA   K     +  +   L+ +HL+CG+++ A Q+F E+ ++ + ++N +I G+++
Sbjct: 132 GEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIRGFVE 191

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G   ++L L   ++     PD YT    LKA  C    V +   L   +H+ I+K    
Sbjct: 192 RGHDGDALGLFSSMLKEAMIPDHYTLGSALKA--CGIVGVAVNVEL---IHSCIIKLGYW 246

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF-MSQGFVEDAEEIFRK 242
            + V+  +L++SY K    S AR+++D + E +++ ST++ISG+ M + + EDA E+F K
Sbjct: 247 DEKVVIGSLINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSEDAMELFCK 306

Query: 243 TVEKDIVVYNAMIEG---YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
              K + +   ++        S+ +AR   ++H  + K     D+ L +ALVDMYAK G+
Sbjct: 307 IHRKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQPMGDIALDNALVDMYAKAGE 366

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
             DA+R FD M  +NV +WTS+I   G+NG+   A+ LF  M E  V+PN VTFL  LSA
Sbjct: 367 FSDAKRAFDEMPYRNVISWTSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFLSLLSA 426

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           CGH GL +KG E F SM   Y + P+ EHY+  +DLL R G LE A K V +   KPNS 
Sbjct: 427 CGHCGLTNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQLEDAWKLVQKTNLKPNSS 486

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA---YVALSNTLAAAGKWDSVTELR 476
           +  A+L +C+LH ++ +   AA  +F ++    PG+   Y  L+N  A    W+     R
Sbjct: 487 MLGAMLGACKLHGNMLLGETAAKNLFSID----PGSSVNYAVLANMYAECSLWEDAQRTR 542

Query: 477 E 477
           E
Sbjct: 543 E 543



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/396 (25%), Positives = 191/396 (48%), Gaps = 24/396 (6%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKP-NTNISIKLLILHLKCGALKYAGQM 102
           TA    S LQ  I+S     G  +H  +      P + ++S KL+I + + G +  A ++
Sbjct: 10  TAPLYSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLVIFYARFGDVAAARKV 69

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           FD +P R++ ++  M++GY +NG+  E+L L   + +SG RP+ +T+     A       
Sbjct: 70  FDGMPHRSVVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACA----- 124

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
                  G  VHA   K     D  + +AL+D +++ G    AR +F  M +K+V+   +
Sbjct: 125 GAGCARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNA 184

Query: 223 MISGFMSQGFVEDAEEIFRKTVEKDIV---------VYNAMIEGYSISIETARKALEVHC 273
           +I GF+ +G   DA  +F   +++ ++         +    I G ++++E       +H 
Sbjct: 185 LIRGFVERGHDGDALGLFSSMLKEAMIPDHYTLGSALKACGIVGVAVNVEL------IHS 238

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
            +IK  ++++  +  +L++ YAKC  +  AR ++D + + ++ + T++I GY  + N ++
Sbjct: 239 CIIKLGYWDEKVVIGSLINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSE 298

Query: 334 -ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACM 392
            A+ELFC +    +  + V     L  C        G +I   M +   M       A +
Sbjct: 299 DAMELFCKIHRKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQPMGDIALDNA-L 357

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
           VD+  +AG    A +   EMP + N   W +L+++C
Sbjct: 358 VDMYAKAGEFSDAKRAFDEMPYR-NVISWTSLITAC 392



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 71/229 (31%), Positives = 116/229 (50%), Gaps = 9/229 (3%)

Query: 141 GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV-LYTALVDSYVKG 199
           G +P    +S +L+   CC S+    +  G+ VH ++        D+ L T LV  Y + 
Sbjct: 6   GAKPTAPLYSSLLQ---CCISSCAFRQ--GKSVHGRVAAASASPPDLHLSTKLVIFYARF 60

Query: 200 GKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF---RKTVEKDIVVYNAMIE 256
           G  + AR VFD M  ++V+  T+M+SG+   G   +A E+F   R +  +          
Sbjct: 61  GDVAAARKVFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAA 120

Query: 257 GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF 316
                   AR   +VH    K  F  D+ + SAL+DM+ +CG ++DAR++F  M +K+V 
Sbjct: 121 SACAGAGCARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVV 180

Query: 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365
           +W ++I G+ + G+   AL LF  M +  + P++ T   AL ACG  G+
Sbjct: 181 SWNALIRGFVERGHDGDALGLFSSMLKEAMIPDHYTLGSALKACGIVGV 229


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  263 bits (672), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 163/458 (35%), Positives = 250/458 (54%), Gaps = 15/458 (3%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           A+ LPS L+    S +  +  ++H++I +  V  +  +   L+ ++ K G ++ A ++F 
Sbjct: 351 ASFLPSILE----SGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEMARKIFQ 406

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP 164
           +     ++    MI+GY+ +G   ++++  R L+  G  P+  T      AS        
Sbjct: 407 QNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTM-----ASVLPACAAL 461

Query: 165 LPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
               LG+ +H  ILK  ++    + +A+ D Y K G+   A   F  M E + IC  SMI
Sbjct: 462 AALKLGKELHCDILKKQLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSMI 521

Query: 225 SGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVF 280
           S F   G  E A ++FR+ +      ++++    ++S      AL    E+H  +I+N F
Sbjct: 522 SSFSQNGKPEMAVDLFRQ-MGMSGAKFDSVSLSSALSSAANLPALYYGKEMHGYVIRNAF 580

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             D  + SAL+DMY+KCGK+  AR VF+ M  KN  +W S+I  YG +G   + L+LF  
Sbjct: 581 SSDTFVASALIDMYSKCGKLALARCVFNLMAGKNEVSWNSIIAAYGNHGCARECLDLFHE 640

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           M    V P++VTFL  +SACGHAGLV +G   F  M R+Y +  +MEHYACMVDL GRAG
Sbjct: 641 MLRAGVHPDHVTFLVIISACGHAGLVGEGIHYFHCMTREYGIGARMEHYACMVDLYGRAG 700

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
            L +A   +  MP  P++ VW  LL +CRLH +VE+A +A+  + +L+  +  G YV LS
Sbjct: 701 RLHEAFDAIKSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKN-SGYYVLLS 759

Query: 461 NTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498
           N  A AG+W SV ++R  MK +GV K  G SW+    G
Sbjct: 760 NVHADAGEWGSVLKVRRLMKEKGVQKIPGYSWIDVNGG 797



 Score =  129 bits (324), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 120/452 (26%), Positives = 201/452 (44%), Gaps = 29/452 (6%)

Query: 3   NLSRIRSSVFSSTHNRHY--TLVPPNQTFPPKLQNY--DSLSNPLTATSLPSALQHYINS 58
           NL  I    FS +   H   T +  N    P+ Q+Y    L +   A S  S +Q     
Sbjct: 7   NLCSIFRLAFSRSKLMHTAGTSICNNVMSKPETQDYLTTQLESLFRACSDASVVQQ---- 62

Query: 59  DTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMI 118
                  ++H  I   G+     +S ++L L++ CG +   G +F  L       +N+MI
Sbjct: 63  -----ARQVHTQIIVGGMSDVCALSSRVLGLYVLCGRISDGGNLFFGLELCNALPWNWMI 117

Query: 119 AGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
            G    G  + +L    K++ S   PD YTF  ++KA     +NVPL      +VH    
Sbjct: 118 RGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGL-NNVPLCM----VVHNTAR 172

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
                 D  + +AL+  Y   G    AR VFD + +++ I    M+ G++  G   +A  
Sbjct: 173 SLGFHVDLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMG 232

Query: 239 IFRKTVEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVFFEDVKLGSALVDMY 294
            F   +     + N++     +SI   R       +VH  +I + F  D ++ + LV MY
Sbjct: 233 TF-CGMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMY 291

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           +KCG + DAR++F+ M Q +  TW  +I GY +NG  ++A  LF  M    V+P+ VTF 
Sbjct: 292 SKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFA 351

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             L +   +G +   +E+   + R + +   +   + ++D+  + G +E A K + +   
Sbjct: 352 SFLPSILESGSLRHCKEVHSYIVR-HRVPFDVYLKSALIDIYFKGGDVEMARK-IFQQNT 409

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446
             +  V  A++S   LH      NI A   F+
Sbjct: 410 LVDVAVCTAMISGYVLHG----LNIDAINTFR 437


>gi|115486938|ref|NP_001065956.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|113648463|dbj|BAF28975.1| Os12g0109300 [Oryza sativa Japonica Group]
 gi|125578262|gb|EAZ19408.1| hypothetical protein OsJ_34963 [Oryza sativa Japonica Group]
          Length = 645

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 156/478 (32%), Positives = 251/478 (52%), Gaps = 31/478 (6%)

Query: 24  PPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNIS 83
           P + TFP  L++   L +PL A                  G ++HA   K     N ++ 
Sbjct: 68  PSHLTFPIALKSASRLPHPLRA------------------GEQLHARSLKLPSHTNPHVL 109

Query: 84  IKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGER 143
             LL L+ +CG L  A ++FDE+P  +  ++  +I  Y+  G + E++ + R   ++G R
Sbjct: 110 TSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMR 169

Query: 144 PDGYTFSMILKASTCCR-SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKT 202
           PD +T   +L A  C R +++     + R    + +   V     + TA VD YVK G+ 
Sbjct: 170 PDSFTAVRVLTA--CARVADLATGETVWRAAEQEGIAQSV----FVATAAVDLYVKCGEM 223

Query: 203 SYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISI 262
           + AR VFD M +K+ +   +M+ G+ S G   +A ++F     + +      + G ++S 
Sbjct: 224 AKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAG-ALSA 282

Query: 263 ETARKALEVHCQLIKNV----FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTW 318
            T   AL++  Q I+ V    F ++  LG+AL+DMYAKCG   +A  VF  M++K++  W
Sbjct: 283 CTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVW 342

Query: 319 TSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER 378
            +MI G G  G+   A  L   M++  V+ N  TF+G L +C H GL+  GR  F +M +
Sbjct: 343 NAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTK 402

Query: 379 DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMAN 438
            Y + P++EHY C+VDLL RAG L++A + + +MP   N+ +  ALL  C++H + E+A 
Sbjct: 403 LYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAE 462

Query: 439 IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
               ++ +L   +  G YV LSN  +  G+W+   +LR  MK +GV K   CSWV  E
Sbjct: 463 HVLTQLIRLEPWN-SGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFE 519


>gi|357480925|ref|XP_003610748.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512083|gb|AES93706.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 828

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 162/485 (33%), Positives = 265/485 (54%), Gaps = 43/485 (8%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           NP+T     SA     + +    G K+   +T+ GVK NT +   LL +++KCG +    
Sbjct: 222 NPVTMVCAISACAKLKDLE---LGKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVR 278

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           ++FDE   + L  YN +++ Y+++G   E L ++ +++  G+RPD  T  M+   + C +
Sbjct: 279 EIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVT--MLSTIAACAQ 336

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
                  ++G+  HA + +  ++  D +  A++D Y+K GK   A  VFD M  K V+  
Sbjct: 337 LG---DLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVTW 393

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEG------YSISIETARK------- 267
            S+I+G +  G +E A  IF +  E ++V +N MI        +  +I+  R+       
Sbjct: 394 NSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGIK 453

Query: 268 -----------------ALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRV 306
                            AL+    ++  + KN    D++LG+ALVDM+++CG   +A RV
Sbjct: 454 GDRVTMVGIASACGYLGALDLAKWIYTYIEKNDIHIDMQLGTALVDMFSRCGDPLNAMRV 513

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           F++M++++V  WT+ I      GN   A+ELF  M +  V+ +   F+  L+A  H G V
Sbjct: 514 FENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHGGYV 573

Query: 367 DKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           D+GR++F +ME+ + + P++ HY CMVDLLGRAG LE+A   +  MP KPN  +W + L+
Sbjct: 574 DQGRQLFWAMEKIHGVSPQIVHYGCMVDLLGRAGLLEEAFDLMKSMPIKPNDVIWGSFLA 633

Query: 427 SCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLK 486
           +CR H +VE AN A  +I +L A ++ G +V LSN  A+AGKW+ V  +R +MK +G  K
Sbjct: 634 ACRKHKNVEFANYADEKITQL-APEKVGIHVLLSNIYASAGKWNDVARVRLQMKEKGFQK 692

Query: 487 DTGCS 491
             G S
Sbjct: 693 VAGSS 697



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 120/499 (24%), Positives = 215/499 (43%), Gaps = 63/499 (12%)

Query: 22  LVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTN 81
           +VP N TFP            L+A S   A            G+++H  + K G+  +  
Sbjct: 118 IVPDNFTFPF----------LLSACSKIMAFSE---------GVQVHGVVVKMGLVKDLF 158

Query: 82  ISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG 141
           ++  L+  +  CG +    ++FDE+ +R + ++  +I GY      +E++ L  ++V  G
Sbjct: 159 VANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVG 218

Query: 142 ERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK 201
             P+  T  M+   S C +        LG+ V   + +  VK++ ++  AL+D Y+K G 
Sbjct: 219 VEPNPVT--MVCAISACAKLK---DLELGKKVCNLMTELGVKSNTLVVNALLDMYMKCGD 273

Query: 202 TSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIEG 257
               R +FD   +KN++   +++S ++  G   +     +E+ +K    D V   + I  
Sbjct: 274 MYAVREIFDEFSDKNLVMYNTIMSNYVQHGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAA 333

Query: 258 YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT 317
            +  +         H  + +N       + +A++DMY KCGK + A +VFD M  K V T
Sbjct: 334 CA-QLGDLSVGKSSHAYVFRNGLERLDNISNAIIDMYMKCGKREAACKVFDSMSNKTVVT 392

Query: 318 WTSMIDGYGKNGNPNQALELFCMMQEC-------------------------------CV 346
           W S+I G  ++G    AL +F  M E                                 +
Sbjct: 393 WNSLIAGLVRDGELELALRIFGEMPESNLVSWNTMIGAMVQASMFEEAIDLLREMQNQGI 452

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
           + + VT +G  SACG+ G +D  + I+  +E++  +   M+    +VD+  R G    A+
Sbjct: 453 KGDRVTMVGIASACGYLGALDLAKWIYTYIEKN-DIHIDMQLGTALVDMFSRCGDPLNAM 511

Query: 407 KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
           + V E  EK +   W A +    +  + + A    +E+ K +       +VAL    +  
Sbjct: 512 R-VFENMEKRDVSAWTAAIRVKAVEGNAKGAIELFDEMLKQDVKADDFVFVALLTAFSHG 570

Query: 467 GKWDSVTELREKM-KLRGV 484
           G  D   +L   M K+ GV
Sbjct: 571 GYVDQGRQLFWAMEKIHGV 589



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 119/430 (27%), Positives = 191/430 (44%), Gaps = 53/430 (12%)

Query: 40  SNPLTATSLPSALQHYINSD-----TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           S+PL    LP+  Q   NS      T     ++H ++ K GV  N N  I   +      
Sbjct: 12  SSPLL---LPTTTQKPKNSSLQTCKTLIELKQLHCNMLKKGV-FNINKLIAACVQMGTHE 67

Query: 95  ALKYAGQMF--DELPQRTLSAYNYMIAGYLKNGQVEESLSL-VRKLVSSGERPDGYTFSM 151
           +L YA   F  DE  + +L   N +I GY  +G  +E++ + +  ++  G  PD +TF  
Sbjct: 68  SLNYALNAFKEDEGTKCSLYTCNTLIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPF 127

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           +L A   C   +      G  VH  ++K  +  D  +  +L+  Y   GK    R VFD 
Sbjct: 128 LLSA---CSKIMAFSE--GVQVHGVVVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDE 182

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV 271
           MLE+NV+  TS+I+G+      ++A  +F + VE   V  N +    +IS     K LE+
Sbjct: 183 MLERNVVSWTSLINGYSVVNMAKEAVCLFFEMVEVG-VEPNPVTMVCAISACAKLKDLEL 241

Query: 272 H---CQLIKNVFFEDVKL-GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
               C L+  +  +   L  +AL+DMY KCG +   R +FD    KN+  + +++  Y +
Sbjct: 242 GKKVCNLMTELGVKSNTLVVNALLDMYMKCGDMYAVREIFDEFSDKNLVMYNTIMSNYVQ 301

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE----IFES-MER---- 378
           +G   + L +   M +   +P+ VT L  ++AC   G +  G+     +F + +ER    
Sbjct: 302 HGLAGEVLVVLDEMLQKGQRPDKVTMLSTIAACAQLGDLSVGKSSHAYVFRNGLERLDNI 361

Query: 379 -----DYSMKPKMEHYAC----------------MVDLLGRAGSLEQALKFVLEMPEKPN 417
                D  MK      AC                ++  L R G LE AL+   EMPE  N
Sbjct: 362 SNAIIDMYMKCGKREAACKVFDSMSNKTVVTWNSLIAGLVRDGELELALRIFGEMPE-SN 420

Query: 418 SDVWAALLSS 427
              W  ++ +
Sbjct: 421 LVSWNTMIGA 430



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 66/252 (26%), Positives = 123/252 (48%), Gaps = 9/252 (3%)

Query: 219 CSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS----IETARKALEVHCQ 274
           C+T +I G+ + G  ++A  I+   +    +V +     + +S    I    + ++VH  
Sbjct: 89  CNT-LIRGYAASGLCKEAIFIYLHMIIVMGIVPDNFTFPFLLSACSKIMAFSEGVQVHGV 147

Query: 275 LIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQA 334
           ++K    +D+ + ++L+  YA CGK+D  R+VFD M ++NV +WTS+I+GY       +A
Sbjct: 148 VVKMGLVKDLFVANSLIHFYAACGKVDLGRKVFDEMLERNVVSWTSLINGYSVVNMAKEA 207

Query: 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394
           + LF  M E  V+PN VT + A+SAC     ++ G+++   M  +  +K        ++D
Sbjct: 208 VCLFFEMVEVGVEPNPVTMVCAISACAKLKDLELGKKVCNLM-TELGVKSNTLVVNALLD 266

Query: 395 LLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG 454
           +  + G +    +   E  +K N  ++  ++S+   H       +  +E+  L    RP 
Sbjct: 267 MYMKCGDMYAVREIFDEFSDK-NLVMYNTIMSNYVQHGLAGEVLVVLDEM--LQKGQRPD 323

Query: 455 AYVALSNTLAAA 466
               LS   A A
Sbjct: 324 KVTMLSTIAACA 335


>gi|356530090|ref|XP_003533617.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Glycine max]
          Length = 566

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 156/472 (33%), Positives = 251/472 (53%), Gaps = 50/472 (10%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IHA + K G + +  +S  L+ ++  CG L  A ++FDE+P+R L ++N ++ GY +
Sbjct: 96  GSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLVSWNSLVCGYGQ 155

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ-----IL 178
             +  E L +   +  +G + D  T   ++ A T          +LG    A      I 
Sbjct: 156 CKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACT----------SLGEWGVADAMVDYIE 205

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
           + +V+ D  L   L+D Y + G    AR VFD M  +N++   +MI G+   G +  A E
Sbjct: 206 ENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYGKAGNLVAARE 265

Query: 239 IFRKTVEKDIVVYNAMIEGYSIS-------------IETARKALEV-------------- 271
           +F    ++D++ +  MI  YS +             +E+  K  E+              
Sbjct: 266 LFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVASVLSACAHTGS 325

Query: 272 -------HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
                  H  + K     D+ +G+AL+DMY KCG ++ A  VF  M++K+  +WTS+I G
Sbjct: 326 LDVGEAAHDYIQKYDVKADIYVGNALIDMYCKCGVVEKALEVFKEMRKKDSVSWTSIISG 385

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP 384
              NG  + AL+ F  M    VQP++  F+G L AC HAGLVDKG E FESME+ Y +KP
Sbjct: 386 LAVNGFADSALDYFSRMLREVVQPSHGAFVGILLACAHAGLVDKGLEYFESMEKVYGLKP 445

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
           +M+HY C+VDLL R+G+L++A +F+ EMP  P+  +W  LLS+ ++H ++ +A IA  ++
Sbjct: 446 EMKHYGCVVDLLSRSGNLQRAFEFIKEMPVTPDVVIWRILLSASQVHGNIPLAEIATKKL 505

Query: 445 FKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
            +L+ ++  G YV  SNT A + +W+   ++RE M+   V K +G S +  E
Sbjct: 506 LELDPSN-SGNYVLSSNTYAGSNRWEDAVKMRELMEKSNVQKPSGSSCIEME 556



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 112/432 (25%), Positives = 196/432 (45%), Gaps = 49/432 (11%)

Query: 99  AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
           A  +F ++ + TL  +N MI G+  + Q  E++ +   +   G   +  T+  + KA  C
Sbjct: 30  AHNLFQQIHRPTLPFWNIMIRGWSVSDQPNEAIRMYNLMYRQGLLGNNLTYLFLFKA--C 87

Query: 159 CRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI 218
            R  VP   + G  +HA++LK   ++   +  AL++ Y   G    A+ VFD M E++++
Sbjct: 88  AR--VP-DVSCGSTIHARVLKLGFESHLYVSNALINMYGSCGHLGLAQKVFDEMPERDLV 144

Query: 219 CSTSMISGFMSQGFVEDAEEIFRKT----VEKD-IVVYNAMIEGYSISIETARKALEVHC 273
              S++ G+       +   +F       V+ D + +   ++   S+       A+  + 
Sbjct: 145 SWNSLVCGYGQCKRFREVLGVFEAMRVAGVKGDAVTMVKVVLACTSLGEWGVADAMVDYI 204

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP-- 331
           +  +N    DV LG+ L+DMY + G +  AR VFD MQ +N+ +W +MI GYGK GN   
Sbjct: 205 E--ENNVEIDVYLGNTLIDMYGRRGLVHLARGVFDQMQWRNLVSWNAMIMGYGKAGNLVA 262

Query: 332 -----------------------------NQALELFCMMQECCVQPNYVTFLGALSACGH 362
                                         +AL LF  M E  V+P+ +T    LSAC H
Sbjct: 263 ARELFDAMSQRDVISWTNMITSYSQAGQFTEALRLFKEMMESKVKPDEITVASVLSACAH 322

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
            G +D G    + +++ Y +K  +     ++D+  + G +E+AL+   EM  K +S  W 
Sbjct: 323 TGSLDVGEAAHDYIQK-YDVKADIYVGNALIDMYCKCGVVEKALEVFKEM-RKKDSVSWT 380

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK-- 480
           +++S   ++   + A    + + +       GA+V +    A AG  D   E  E M+  
Sbjct: 381 SIISGLAVNGFADSALDYFSRMLREVVQPSHGAFVGILLACAHAGLVDKGLEYFESMEKV 440

Query: 481 --LRGVLKDTGC 490
             L+  +K  GC
Sbjct: 441 YGLKPEMKHYGC 452


>gi|108862088|gb|ABA96198.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 156/478 (32%), Positives = 251/478 (52%), Gaps = 31/478 (6%)

Query: 24  PPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNIS 83
           P + TFP  L++   L +PL A                  G ++HA   K     N ++ 
Sbjct: 115 PSHLTFPIALKSASRLPHPLRA------------------GEQLHARSLKLPSHTNPHVL 156

Query: 84  IKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGER 143
             LL L+ +CG L  A ++FDE+P  +  ++  +I  Y+  G + E++ + R   ++G R
Sbjct: 157 TSLLTLYARCGLLHRAQRVFDEMPHPSTVSWTALITAYMDAGDLREAVHVARNAFANGMR 216

Query: 144 PDGYTFSMILKASTCCR-SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKT 202
           PD +T   +L A  C R +++     + R    + +   V     + TA VD YVK G+ 
Sbjct: 217 PDSFTAVRVLTA--CARVADLATGETVWRAAEQEGIAQSV----FVATAAVDLYVKCGEM 270

Query: 203 SYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISI 262
           + AR VFD M +K+ +   +M+ G+ S G   +A ++F     + +      + G ++S 
Sbjct: 271 AKAREVFDKMRDKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGVRPDCYAVAG-ALSA 329

Query: 263 ETARKALEVHCQLIKNV----FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTW 318
            T   AL++  Q I+ V    F ++  LG+AL+DMYAKCG   +A  VF  M++K++  W
Sbjct: 330 CTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTAEAWVVFQQMRKKDIIVW 389

Query: 319 TSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER 378
            +MI G G  G+   A  L   M++  V+ N  TF+G L +C H GL+  GR  F +M +
Sbjct: 390 NAMILGLGMTGHEKTAFTLIGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTK 449

Query: 379 DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMAN 438
            Y + P++EHY C+VDLL RAG L++A + + +MP   N+ +  ALL  C++H + E+A 
Sbjct: 450 LYHISPRIEHYGCIVDLLSRAGLLQEAHQLIDDMPMPANAVILGALLGGCKIHRNAELAE 509

Query: 439 IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
               ++ +L   +  G YV LSN  +  G+W+   +LR  MK +GV K   CSWV  E
Sbjct: 510 HVLTQLIRLEPWN-SGNYVMLSNIYSNRGRWEDAAKLRLDMKEKGVEKVPACSWVEFE 566


>gi|395146511|gb|AFN53666.1| hypothetical protein [Linum usitatissimum]
          Length = 850

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 170/546 (31%), Positives = 274/546 (50%), Gaps = 70/546 (12%)

Query: 9   SSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLP-SALQHYIN--SDTPF--- 62
           ++ FSS     Y     +Q   P L +++ L   L  +S P  ++  +I    D+PF   
Sbjct: 180 AAAFSSFSALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPN 239

Query: 63  ------------------YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
                              G  +H    KT    +  +   L+  +  CG L  A  +F+
Sbjct: 240 KFTFPVLIKAVAERRCFLVGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFE 299

Query: 105 --ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
             E   + + ++N M+ G+++ G  +++L L  ++ + G  P+  T  M+   S C ++ 
Sbjct: 300 MIEGNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVT--MVSVMSACAKT- 356

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
             +   LGR V   I + ++  +  +  A +D +VK G+   AR +FD M +++V+  T+
Sbjct: 357 --MNLTLGRKVCDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTT 414

Query: 223 MISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV----------- 271
           +I G+        A +IF     KDI  +N +I GY  S    ++AL +           
Sbjct: 415 IIDGYAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQS-GRPKEALAIFRELQLTKSGA 473

Query: 272 --------------------------HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARR 305
                                     H  + K     +  L ++L+DMY+K G ++ A  
Sbjct: 474 RPDQVTLLSTLSACAQLGAMDIGEWIHGYIKKERIQLNRNLATSLIDMYSKSGDVEKAIE 533

Query: 306 VFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365
           VF  +  K+VF W++MI G   +G    A+ELF  MQE  V+PN VTF   L AC H+GL
Sbjct: 534 VFHSIGNKDVFVWSAMIAGLAMHGRGEAAIELFLDMQETQVKPNSVTFTNLLCACSHSGL 593

Query: 366 VDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
           VD+G+ +F+ MER Y + PK +HY+CMVD+LGRAG LE+ALKF+  MP  P++ VW ALL
Sbjct: 594 VDEGKRLFDEMERVYGVVPKTKHYSCMVDVLGRAGHLEEALKFIEGMPLAPSASVWGALL 653

Query: 426 SSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485
            +C +H ++E+A  A + + ++   +  GAYV LSN  A  G W+ V+ELR++M+  G+ 
Sbjct: 654 GACCIHGNLELAEKACSRLLEIEPGNH-GAYVLLSNLYAKTGDWEGVSELRQQMRDSGLK 712

Query: 486 KDTGCS 491
           K+TGCS
Sbjct: 713 KETGCS 718



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 112/454 (24%), Positives = 215/454 (47%), Gaps = 61/454 (13%)

Query: 38  SLSNPLTATSLPSALQHYINSDTPFYGLK-IHAHITKTGVKPNTNISIKLLILHL--KCG 94
           S   P +AT+     +      T F  LK IHA + +T    +   + +L          
Sbjct: 128 SSPTPASATATNVGDRALFQQCTSFKQLKQIHAQMLRTNKLHDPYAASELFTAAAFSSFS 187

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ-VEESLSLVRKLVSSGERPDGYTFSMIL 153
           AL YA ++FD++PQ  L ++N +I     +   ++  L  +R L  S   P+ +TF +++
Sbjct: 188 ALDYARKVFDQIPQPNLYSWNILIRALATSSDPIQSVLVFIRMLHDSPFGPNKFTFPVLI 247

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
           KA    R  +     +G+ VH   +K     D  +  +L+  Y   G    A +VF+M+ 
Sbjct: 248 KAVAERRCFL-----VGKAVHGMAIKTSFGDDVFVLNSLIHFYASCGHLDLAYLVFEMIE 302

Query: 214 --EKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIE--GYSISIETA 265
              K+++   SM++GF+  G+ + A ++F +     V  + V   +++     ++++   
Sbjct: 303 GNNKDIVSWNSMVTGFVQGGYPDKALDLFERMRNEGVHPNAVTMVSVMSACAKTMNLTLG 362

Query: 266 RKALEVHCQLI-KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
           RK     C  I +N    ++ + +A +DM+ KCG+++ AR +FD+M++++V +WT++IDG
Sbjct: 363 RKV----CDYIDRNEMMMNLNVCNATIDMFVKCGEVEIARGLFDNMEKRDVVSWTTIIDG 418

Query: 325 YGK-------------------------------NGNPNQALELFCMMQ--ECCVQPNYV 351
           Y K                               +G P +AL +F  +Q  +   +P+ V
Sbjct: 419 YAKMSEHGIARDIFDSMPRKDIPAWNVLISGYEQSGRPKEALAIFRELQLTKSGARPDQV 478

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
           T L  LSAC   G +D G  I   ++++  ++        ++D+  ++G +E+A++    
Sbjct: 479 TLLSTLSACAQLGAMDIGEWIHGYIKKE-RIQLNRNLATSLIDMYSKSGDVEKAIEVFHS 537

Query: 412 MPEKPNSDVWAALLSSCRLHDDVEMANIAANEIF 445
           +  K +  VW+A+++   +H   E    AA E+F
Sbjct: 538 IGNK-DVFVWSAMIAGLAMHGRGE----AAIELF 566


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 162/535 (30%), Positives = 278/535 (51%), Gaps = 69/535 (12%)

Query: 21  TLVPPNQ-TFPPKLQNYDSLSNPLTATSL----------------PSALQHYINSDTPFY 63
           T+  PNQ  +   L+ Y   S+P++A  L                P  L+    S     
Sbjct: 25  TIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKAFEE 84

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGAL--------------------------- 96
           G +IH H+ K G +P+  +   L+ ++ + G L                           
Sbjct: 85  GQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTALITGYAS 144

Query: 97  ----KYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
               + A +MFDE+P + + ++N MI+GY + G  +E+L L ++++ +  RPD  T   +
Sbjct: 145 SGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDEGTMVTV 204

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L A    RS       LGR VH+ I      ++  +  AL+D Y K G+   A  +F+ +
Sbjct: 205 LSACAQSRS-----VELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVETACGLFEGL 259

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE-----KDIVVYNAMIEGYSI-SIETAR 266
             K+V+   ++I G+      ++A  +F++ +       D+ + + +     + +I+  R
Sbjct: 260 SCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDIGR 319

Query: 267 KALEVHCQLIKNVFFEDV----KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
               +H  + K +  +DV     L ++L+DMYAKCG I+ A +VF+ M  K++ +W +MI
Sbjct: 320 W---IHVYIDKKL--KDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMI 374

Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382
            G+  +G  N   +LF  M++  ++P+ +TF+G LSAC H+G +D GR IF+SM +DY +
Sbjct: 375 FGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDI 434

Query: 383 KPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAAN 442
            PK+EHY CM+DLLG +G  ++A + +  MP +P+  +W +LL +CR H ++E+A   A 
Sbjct: 435 TPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFAR 494

Query: 443 EIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTES 497
            + K+   + PG+YV LSN  A AG+WD V ++R  +  +G+ K  GCS +  +S
Sbjct: 495 NLMKVEP-ENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDS 548



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 113/423 (26%), Positives = 192/423 (45%), Gaps = 65/423 (15%)

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
              YA  +F  + +     +N M+ GY  +     +L L   ++S G  P+ YTF  +LK
Sbjct: 15  GFPYAISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLK 74

Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE 214
             +C +S        G+ +H  +LK   + D  ++T+L+  Y + G+   A  VFD    
Sbjct: 75  --SCAKSKA---FEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSH 129

Query: 215 KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY---------------- 258
           ++V+  T++I+G+ S G +  A+E+F +   KD+V +NAMI GY                
Sbjct: 130 RDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEM 189

Query: 259 ---------------------SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
                                S S+E  R   +VH  +  + F  ++K+ +AL+D+Y+KC
Sbjct: 190 MKTNVRPDEGTMVTVLSACAQSRSVELGR---QVHSWIDDHGFGSNLKIVNALIDLYSKC 246

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G+++ A  +F+ +  K+V +W ++I GY       +AL LF  M      PN VT +  L
Sbjct: 247 GQVETACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSIL 306

Query: 358 SACGHAGLVDKGREIFESME---RDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
            AC H G +D GR I   ++   +D +  P +     ++D+  + G +E A +    M  
Sbjct: 307 PACAHLGAIDIGRWIHVYIDKKLKDVTNAPSLR--TSLIDMYAKCGDIEAAHQVFNSMLH 364

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA-------YVALSNTLAAAG 467
           K  S  W A++    +H         AN  F L +  R          +V L +  + +G
Sbjct: 365 KSLSS-WNAMIFGFAMHG-------RANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSG 416

Query: 468 KWD 470
           K D
Sbjct: 417 KLD 419


>gi|413942600|gb|AFW75249.1| hypothetical protein ZEAMMB73_388642 [Zea mays]
          Length = 693

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 156/432 (36%), Positives = 239/432 (55%), Gaps = 14/432 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++HA   + G+    N+S  +L  + KCGA++ A  +FD +P R   ++N MI GY  NG
Sbjct: 140 EVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNG 199

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              E+++L  ++V  G      T + +L A   C     L     R VH  +++  + ++
Sbjct: 200 NATEAMALFWRMVQEGV---DVTDASVLAALQACGELGYLDEV--RRVHELLVRVGLSSN 254

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNV-ICSTSMISGFMSQGFVEDAEEIFRK-- 242
             +  AL+ +Y K  +   A  VF+ +  K   I   +MI GF      EDAE +F +  
Sbjct: 255 VSVTNALITTYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQ 314

Query: 243 --TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
              V  D     ++I   +  I    +A  +H   I++   +DV + +AL+DMY+KCG++
Sbjct: 315 LENVRPDSFTLVSVIPAVA-DISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRV 373

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
             ARR+FD  + ++V TW +MI GYG +G    A+ELF  M+     PN  TFL  L+AC
Sbjct: 374 SIARRLFDSARDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAAC 433

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            HAGLVD+G++ F SM++DY ++P MEHY  MVDLLGRAG L++A  F+  MP +P   V
Sbjct: 434 SHAGLVDEGQKYFASMKKDYGLEPGMEHYGTMVDLLGRAGKLDEAWSFIKNMPIEPGISV 493

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY-VALSNTLAAAGKWDSVTELREKM 479
           + A+L +C+LH +VE+A  +A  IF+L   +  G Y V L+N  A A  W  V  +R  M
Sbjct: 494 YGAMLGACKLHKNVELAEESAQIIFELGPEE--GVYHVLLANIYANASMWKDVARVRTAM 551

Query: 480 KLRGVLKDTGCS 491
           + +G+ K  G S
Sbjct: 552 EKKGLQKTPGWS 563



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 90/308 (29%), Positives = 150/308 (48%), Gaps = 23/308 (7%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +HA +   G+   +  S  L  ++ KC     A ++FD +P R   A+N ++AGY +
Sbjct: 35  GRAVHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRMPSRDRVAWNAVVAGYAR 94

Query: 124 NGQVEESLSLVRKLVS--SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           NG    ++  V ++     GERPD  T   +L A    R+      +  R VHA  L+  
Sbjct: 95  NGLPSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARA-----LHACREVHAFALRAG 149

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +     + TA++D+Y K G    AR VFD M  +N +   +MI G+   G   +A  +F 
Sbjct: 150 LDELVNVSTAVLDAYCKCGAVEAARAVFDCMPVRNSVSWNAMIDGYADNGNATEAMALFW 209

Query: 242 KTVEKDIVVYNAMI---------EGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVD 292
           + V++ + V +A +          GY   ++  R+   VH  L++     +V + +AL+ 
Sbjct: 210 RMVQEGVDVTDASVLAALQACGELGY---LDEVRR---VHELLVRVGLSSNVSVTNALIT 263

Query: 293 MYAKCGKIDDARRVFDHM-QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
            YAKC + D A +VF+ +  +K   +W +MI G+ +N  P  A  LF  MQ   V+P+  
Sbjct: 264 TYAKCKRADLAAQVFNELGNKKTRISWNAMILGFTQNECPEDAERLFARMQLENVRPDSF 323

Query: 352 TFLGALSA 359
           T +  + A
Sbjct: 324 TLVSVIPA 331



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 12/161 (7%)

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           VH QL       +    +AL +MY KC +  DARRVFD M  ++   W +++ GY +NG 
Sbjct: 38  VHAQLEARGLASESIASTALANMYFKCRRPADARRVFDRMPSRDRVAWNAVVAGYARNGL 97

Query: 331 PNQALELFCMMQ--ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           P+ A+E    MQ  E   +P+ VT +  L AC  A  +   RE+       ++++  ++ 
Sbjct: 98  PSSAMEAVVRMQGEEGGERPDSVTLVSVLPACADARALHACREVHA-----FALRAGLDE 152

Query: 389 Y----ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
                  ++D   + G++E A      MP + NS  W A++
Sbjct: 153 LVNVSTAVLDAYCKCGAVEAARAVFDCMPVR-NSVSWNAMI 192



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 57/272 (20%), Positives = 107/272 (39%), Gaps = 42/272 (15%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +L S +    +   P     IH +  +  +  +  +   L+ ++ KCG +  A ++FD  
Sbjct: 324 TLVSVIPAVADISDPLQARWIHGYSIRHQLDQDVYVLTALIDMYSKCGRVSIARRLFDSA 383

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
             R +  +N MI GY  +G  + ++ L  ++  +G  P+  TF  +L A +         
Sbjct: 384 RDRHVITWNAMIHGYGSHGFGQAAVELFEEMKGTGSLPNETTFLSVLAACS--------- 434

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
                                 +  LVD     G+  +A +  D  LE  +    +M+  
Sbjct: 435 ----------------------HAGLVDE----GQKYFASMKKDYGLEPGMEHYGTMVDL 468

Query: 227 FMSQGFVEDAEEIFRKT-VEKDIVVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFED 283
               G +++A    +   +E  I VY AM+    +  ++E A    E   Q+I  +  E+
Sbjct: 469 LGRAGKLDEAWSFIKNMPIEPGISVYGAMLGACKLHKNVELA----EESAQIIFELGPEE 524

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
                 L ++YA      D  RV   M++K +
Sbjct: 525 GVYHVLLANIYANASMWKDVARVRTAMEKKGL 556


>gi|297741128|emb|CBI31859.3| unnamed protein product [Vitis vinifera]
          Length = 514

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 159/458 (34%), Positives = 252/458 (55%), Gaps = 13/458 (2%)

Query: 38  SLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALK 97
           +LS+ +   +L  AL   IN+ T      IH H  K G +    +S  L+ ++  CG L 
Sbjct: 19  ALSSTIAPAALVVALTTNINAST--ISSSIHVHALKLGFESYLFVSNALIHMYAMCGQLG 76

Query: 98  YAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           +A +MFD +  R L ++N +I GY +  + +E L L   + ++  + D  T   I+ A +
Sbjct: 77  FAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACS 136

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
               +     ++ + +    L+ DV     L   L+D Y + G  + AR +FD M +++V
Sbjct: 137 HL-GDWEFADSMVKYIKENNLEIDV----YLGNTLIDMYGRLGNLTAARKLFDNMPKRDV 191

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHC 273
           I  TSMI+G+       DA ++F++     V+ D V   +++   +  +        VH 
Sbjct: 192 ISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDKVTVASVLSACA-HLGKLDVGWAVHH 250

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
            + ++    D+ +G++L+DMY KCG ++ A  VF  M+ K+  +WTS+I G   NG  N 
Sbjct: 251 YIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHRMKDKDSVSWTSVISGLAVNGFANS 310

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMV 393
           AL+LF  M    VQP + TF+G L AC HAGLV+KG E FESME  + + P M+HY C+V
Sbjct: 311 ALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKGLEYFESMESVHGLVPAMKHYGCVV 370

Query: 394 DLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRP 453
           DLL R+G++++A +F+ +MP  P+  VW  LLS+C+LH +V +A IA   + +L+  D  
Sbjct: 371 DLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACKLHGNVVLAEIATKRLLELDPCD-S 429

Query: 454 GAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
           G YV LSNT A   +WD   ++RE M+   V K +G S
Sbjct: 430 GNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSGSS 467


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 163/484 (33%), Positives = 255/484 (52%), Gaps = 32/484 (6%)

Query: 20  YTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPN 79
           Y L+  N T P    NY          S P  L+          G +IH+   K GV  +
Sbjct: 115 YNLMLRNGTLP---DNY----------SFPFVLKACARLSLLHKGREIHSSTLKLGVHLD 161

Query: 80  TNISIKLLILHLKCGALKYAGQMFDELPQ--RTLSAYNYMIAGYLKNGQVEESLSLVRKL 137
             +   L+     CGA++ A  +FD LP   R + ++N MI+GYL++ + E +L +  +L
Sbjct: 162 VFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWEL 221

Query: 138 VSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196
           +  G   PD  T  ++   S C R  +    +LG+ +H          D  + ++L+D Y
Sbjct: 222 LGDGSLSPDEVT--LVSALSVCGRLGL---LDLGKKIHGLFTGSGFVLDVFVGSSLIDMY 276

Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE 256
            K G+   AR VFD +  +N +C TSMI+G+      ++A E+FR+          A I 
Sbjct: 277 SKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIA 336

Query: 257 ------GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM 310
                 G+  ++   R  + ++C+  +N    D+   +AL+ MY+KCG I  A  +F  +
Sbjct: 337 CVLSACGHWGALAQGR-WIHLYCE--RNSIEMDLNARNALIGMYSKCGDIQKALEIFHGL 393

Query: 311 QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNYVTFLGALSACGHAGLVDKG 369
            Q ++F+W+++I G   NG  ++AL LF  M+    ++PN +TFLG L AC H G VDKG
Sbjct: 394 TQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVDKG 453

Query: 370 REIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCR 429
              F +M + Y++ P +EHY CMVDLLGRA  L +A KF+  +P +P+  +W +LL +CR
Sbjct: 454 LYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLLFACR 513

Query: 430 LHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTG 489
            H ++E+A  AA +I +L    R GA V LSN  A+A +W  V  +R+ M  + + K  G
Sbjct: 514 NHGNIELAEFAAKQIEELEPR-RCGARVLLSNVYASASRWGDVKRVRKDMATQRIKKQPG 572

Query: 490 CSWV 493
           CS+V
Sbjct: 573 CSFV 576



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 201/380 (52%), Gaps = 16/380 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGA-LKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           +I +H   +GV  +  +S KLL   L       ++  +F ++ +  + ++N+M   Y ++
Sbjct: 46  QILSHAIASGVFRDPVVSSKLLYYSLSHDHDFAFSRTLFFQIHKPNVFSWNFMFRAYSRS 105

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
               E+++L   ++ +G  PD Y+F  +LKA  C R ++    + GR +H+  LK  V  
Sbjct: 106 SFPAETIALYNLMLRNGTLPDNYSFPFVLKA--CARLSL---LHKGREIHSSTLKLGVHL 160

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMM--LEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           D  +  AL+ ++   G    AR VFDM+  L ++V+   SMISG++     E A ++F +
Sbjct: 161 DVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVFWE 220

Query: 243 TVEKDIVVYNAMIEGYSISIETARKAL-----EVHCQLIKNVFFEDVKLGSALVDMYAKC 297
            +    +  + +    ++S+   R  L     ++H     + F  DV +GS+L+DMY+KC
Sbjct: 221 LLGDGSLSPDEVTLVSALSV-CGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSKC 279

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G+I+DAR+VFD +  +N   WTSMI GY ++    +A+ELF  MQ      +  T    L
Sbjct: 280 GQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACVL 339

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           SACGH G + +GR I    ER+ S++  +     ++ +  + G +++AL+ +     +P+
Sbjct: 340 SACGHWGALAQGRWIHLYCERN-SIEMDLNARNALIGMYSKCGDIQKALE-IFHGLTQPD 397

Query: 418 SDVWAALLSSCRLHDDVEMA 437
              W+A++S   ++ + + A
Sbjct: 398 IFSWSAVISGLAMNGESDKA 417


>gi|15222566|ref|NP_173907.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75172213|sp|Q9FRI5.1|PPR57_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g25360
 gi|11067273|gb|AAG28801.1|AC079374_4 hypothetical protein [Arabidopsis thaliana]
 gi|332192491|gb|AEE30612.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 790

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 159/505 (31%), Positives = 272/505 (53%), Gaps = 81/505 (16%)

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGA----LKYAGQMFDELPQR----------- 109
           ++ HA   K+G    T++S  L+ ++ KC +    L  A ++FDE+ ++           
Sbjct: 169 VQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTG 228

Query: 110 ---------------------TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYT 148
                                 L AYN MI+GY+  G  +E+L +VR++VSSG   D +T
Sbjct: 229 YVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFT 288

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLY--TALVDSYVKGGKTSYAR 206
           +  +++A  C  + +     LG+ VHA +L+   + D   +   +LV  Y K GK   AR
Sbjct: 289 YPSVIRA--CATAGL---LQLGKQVHAYVLR---REDFSFHFDNSLVSLYYKCGKFDEAR 340

Query: 207 IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEG--------- 257
            +F+ M  K+++   +++SG++S G + +A+ IF++  EK+I+ +  MI G         
Sbjct: 341 AIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEE 400

Query: 258 -------------------YSISIETAR------KALEVHCQLIKNVFFEDVKLGSALVD 292
                              +S +I++           + H QL+K  F   +  G+AL+ 
Sbjct: 401 GLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALIT 460

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           MYAKCG +++AR+VF  M   +  +W ++I   G++G+  +A++++  M +  ++P+ +T
Sbjct: 461 MYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRIT 520

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
            L  L+AC HAGLVD+GR+ F+SME  Y + P  +HYA ++DLL R+G    A   +  +
Sbjct: 521 LLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESL 580

Query: 413 PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSV 472
           P KP +++W ALLS CR+H ++E+  IAA+++F L   +  G Y+ LSN  AA G+W+ V
Sbjct: 581 PFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGL-IPEHDGTYMLLSNMHAATGQWEEV 639

Query: 473 TELREKMKLRGVLKDTGCSWVGTES 497
             +R+ M+ RGV K+  CSW+  E+
Sbjct: 640 ARVRKLMRDRGVKKEVACSWIEMET 664



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 164/385 (42%), Gaps = 81/385 (21%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ------------------ 108
           +H +I   G +P  +I  +L+ ++ K   L YA Q+FDE+ +                  
Sbjct: 36  VHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGD 95

Query: 109 ---------------RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
                          R    YN MI G+  N     +++L  K+   G +PD +TF+ +L
Sbjct: 96  ITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVL 155

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKT----SYARIVF 209
                    V          HA  LK        +  ALV  Y K   +      AR VF
Sbjct: 156 AGLAL----VADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVF 211

Query: 210 DMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK-DIVVYNAMIEG------YSISI 262
           D +LEK+    T+M++G++  G+ +  EE+     +   +V YNAMI G      Y  ++
Sbjct: 212 DEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEAL 271

Query: 263 ETARKAL----------------------------EVHCQLIKNVFFEDVKLGSALVDMY 294
           E  R+ +                            +VH  +++   F      ++LV +Y
Sbjct: 272 EMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFS-FHFDNSLVSLY 330

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
            KCGK D+AR +F+ M  K++ +W +++ GY  +G+  +A  +F  M+E     N ++++
Sbjct: 331 YKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKE----KNILSWM 386

Query: 355 GALSACGHAGLVDKGREIFESMERD 379
             +S     G  ++G ++F  M+R+
Sbjct: 387 IMISGLAENGFGEEGLKLFSCMKRE 411



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 146/346 (42%), Gaps = 85/346 (24%)

Query: 160 RSNVPLPR---NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216
           R  +PL R    L R VH  I+    +    +   L+D Y K  + +YAR +FD + E +
Sbjct: 20  RLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPD 79

Query: 217 VICSTSMISGFMSQGFVEDAEEIFRK--TVEKDIVVYNAMIEGYS--------------- 259
            I  T+M+SG+ + G +  A  +F K     +D V+YNAMI G+S               
Sbjct: 80  KIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKM 139

Query: 260 --------------------ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
                               +  +  ++ ++ H   +K+       + +ALV +Y+KC  
Sbjct: 140 KHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCAS 199

Query: 300 ----IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPN----------------------- 332
               +  AR+VFD + +K+  +WT+M+ GY KNG  +                       
Sbjct: 200 SPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMIS 259

Query: 333 ---------QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER--DYS 381
                    +ALE+   M    ++ +  T+   + AC  AGL+  G+++   + R  D+S
Sbjct: 260 GYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFS 319

Query: 382 MKPKMEHY-ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
                 H+   +V L  + G  ++A     +MP K +   W ALLS
Sbjct: 320 F-----HFDNSLVSLYYKCGKFDEARAIFEKMPAK-DLVSWNALLS 359



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 68/326 (20%), Positives = 130/326 (39%), Gaps = 46/326 (14%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L   + PS ++    +     G ++HA++ +     + +    L+ L+ KCG    A  +
Sbjct: 284 LDEFTYPSVIRACATAGLLQLGKQVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAI 342

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQV-------------------------------EESL 131
           F+++P + L ++N +++GY+ +G +                               EE L
Sbjct: 343 FEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGL 402

Query: 132 SLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTA 191
            L   +   G  P  Y FS  +K+     +        G+  HAQ+LK    +      A
Sbjct: 403 KLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCN-----GQQYHAQLLKIGFDSSLSAGNA 457

Query: 192 LVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEIFRKTVEKD 247
           L+  Y K G    AR VF  M   + +   ++I+     G   +A    EE+ +K +  D
Sbjct: 458 LITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPD 517

Query: 248 IVVYNAMIEGYSIS--IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARR 305
            +    ++   S +  ++  RK  +    + +     D    + L+D+  + GK  DA  
Sbjct: 518 RITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHY--ARLIDLLCRSGKFSDAES 575

Query: 306 VFDHMQQK-NVFTWTSMIDGYGKNGN 330
           V + +  K     W +++ G   +GN
Sbjct: 576 VIESLPFKPTAEIWEALLSGCRVHGN 601



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/193 (24%), Positives = 85/193 (44%), Gaps = 17/193 (8%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G + HA + K G   + +    L+ ++ KCG ++ A Q+F  +P     ++N +IA   +
Sbjct: 436 GQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQ 495

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH---AQILKC 180
           +G   E++ +  +++  G RPD  T   +L A  C  + +    + GR        + + 
Sbjct: 496 HGHGAEAVDVYEEMLKKGIRPDRITLLTVLTA--CSHAGLV---DQGRKYFDSMETVYRI 550

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK------NVICSTSMISGFMSQGFVE 234
              AD   Y  L+D   + GK S A  V + +  K        + S   + G M  G + 
Sbjct: 551 PPGADH--YARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIA 608

Query: 235 DAEEIFRKTVEKD 247
            A+++F    E D
Sbjct: 609 -ADKLFGLIPEHD 620


>gi|222629606|gb|EEE61738.1| hypothetical protein OsJ_16261 [Oryza sativa Japonica Group]
          Length = 767

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 146/421 (34%), Positives = 233/421 (55%), Gaps = 16/421 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA   K     +  +   L+ +HL+CG+++ A Q+F E+ ++ + ++N +I G+++
Sbjct: 340 GEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALIRGFVE 399

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G   ++L L   ++     PD YT    LKA       V +      ++H+ I+K    
Sbjct: 400 RGHDGDALGLFSSMLKEAMIPDHYTLGSALKACGIVGVAVNV-----ELIHSCIIKLGYW 454

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF-MSQGFVEDAEEIFRK 242
            + V+  +L++SY K    S AR+++D + E +++ ST++ISG+ M + + EDA E+F K
Sbjct: 455 DEKVVIGSLINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSEDAMELFCK 514

Query: 243 TVEKDIVVYNAMIEG---YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
              K + +   ++        S+ +AR   ++H  + K     D+ L +ALVDMYAK G+
Sbjct: 515 IHRKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQPMGDIALDNALVDMYAKAGE 574

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
             DA+R FD M  +NV +WTS+I   G+NG+   A+ LF  M E  V+PN VTFL  LSA
Sbjct: 575 FSDAKRAFDEMPYRNVISWTSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFLSLLSA 634

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           CGH GL +KG E F SM   Y + P+ EHY+  +DLL R G LE A K V +   KPNS 
Sbjct: 635 CGHCGLTNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQLEDAWKLVQKTNLKPNSS 694

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA---YVALSNTLAAAGKWDSVTELR 476
           +  A+L +C+LH ++ +   AA  +F ++    PG+   Y  L+N  A    W+     R
Sbjct: 695 MLGAMLGACKLHGNMLLGETAAKNLFSID----PGSSVNYAVLANMYAECSLWEDAQRTR 750

Query: 477 E 477
           E
Sbjct: 751 E 751



 Score =  123 bits (308), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 160/369 (43%), Gaps = 72/369 (19%)

Query: 64  GLKIHAHITKTGVKP-NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G  +H  +      P + ++S KL+I + + G +  A ++FD +P R++ ++  M++GY 
Sbjct: 76  GKSVHGRVAAASASPPDLHLSTKLVIFYARFGDVAAARKVFDGMPHRSVVSWTAMVSGYA 135

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +NG+  E+L L   + +SG RP+ +T+     A              G  VHA   K   
Sbjct: 136 RNGRPREALELFALMRASGARPNQFTYGSAASACA-----GAGCARSGEQVHACAAKGRF 190

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM---------------ISGF 227
             D  + +AL+D +++ G    AR +F  M +K+V C +S                ++ F
Sbjct: 191 AGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVCCISSWQFPERQIRSTAGSPPVTAF 250

Query: 228 MSQGFVEDAEEIFRKTV---------------EKDIVVYNAMIEGYSISIETARKALE-- 270
                +          V                + +V + AM+ GY+ +    R+ALE  
Sbjct: 251 PPDLHLRHQARHLLGAVSAKSPPPARCSMECPHRSLVSWTAMVSGYARN-GRPREALELF 309

Query: 271 ---------------------------------VHCQLIKNVFFEDVKLGSALVDMYAKC 297
                                            VH    K  F  D+ + SAL+DM+ +C
Sbjct: 310 ALMRASGARPNQFTYGSAASACAGAGCARSGEQVHACAAKGRFAGDMFVQSALMDMHLRC 369

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G ++DAR++F  M +K+V +W ++I G+ + G+   AL LF  M +  + P++ T   AL
Sbjct: 370 GSVEDARQLFAEMGKKDVVSWNALIRGFVERGHDGDALGLFSSMLKEAMIPDHYTLGSAL 429

Query: 358 SACGHAGLV 366
            ACG  G+ 
Sbjct: 430 KACGIVGVA 438



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/334 (25%), Positives = 161/334 (48%), Gaps = 23/334 (6%)

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP 164
           E P R+L ++  M++GY +NG+  E+L L   + +SG RP+ +T+     A         
Sbjct: 280 ECPHRSLVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACA-----GA 334

Query: 165 LPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
                G  VHA   K     D  + +AL+D +++ G    AR +F  M +K+V+   ++I
Sbjct: 335 GCARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNALI 394

Query: 225 SGFMSQGFVEDAEEIFRKTVEKDIV---------VYNAMIEGYSISIETARKALEVHCQL 275
            GF+ +G   DA  +F   +++ ++         +    I G ++++E       +H  +
Sbjct: 395 RGFVERGHDGDALGLFSSMLKEAMIPDHYTLGSALKACGIVGVAVNVEL------IHSCI 448

Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ-A 334
           IK  ++++  +  +L++ YAKC  +  AR ++D + + ++ + T++I GY  + N ++ A
Sbjct: 449 IKLGYWDEKVVIGSLINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSEDA 508

Query: 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394
           +ELFC +    +  + V     L  C        G +I   M +   M       A +VD
Sbjct: 509 MELFCKIHRKGLWIDGVLLSSVLCLCASVASARFGTQIHAYMCKKQPMGDIALDNA-LVD 567

Query: 395 LLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
           +  +AG    A +   EMP + N   W +L+++C
Sbjct: 568 MYAKAGEFSDAKRAFDEMPYR-NVISWTSLITAC 600



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 74/133 (55%), Gaps = 1/133 (0%)

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           D+ L + LV  YA+ G +  AR+VFD M  ++V +WT+M+ GY +NG P +ALELF +M+
Sbjct: 92  DLHLSTKLVIFYARFGDVAAARKVFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMR 151

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
               +PN  T+  A SAC  AG    G ++     +       M   + ++D+  R GS+
Sbjct: 152 ASGARPNQFTYGSAASACAGAGCARSGEQVHACAAKG-RFAGDMFVQSALMDMHLRCGSV 210

Query: 403 EQALKFVLEMPEK 415
           E A +   EM +K
Sbjct: 211 EDARQLFAEMGKK 223



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/162 (30%), Positives = 80/162 (49%), Gaps = 6/162 (3%)

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDV-LYTALVDSYVKGGKTSYARIVFDMMLEKN 216
           CC S+    +  G+ VH ++        D+ L T LV  Y + G  + AR VFD M  ++
Sbjct: 66  CCISSCAFRQ--GKSVHGRVAAASASPPDLHLSTKLVIFYARFGDVAAARKVFDGMPHRS 123

Query: 217 VICSTSMISGFMSQGFVEDAEEIF---RKTVEKDIVVYNAMIEGYSISIETARKALEVHC 273
           V+  T+M+SG+   G   +A E+F   R +  +                  AR   +VH 
Sbjct: 124 VVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACAGAGCARSGEQVHA 183

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
              K  F  D+ + SAL+DM+ +CG ++DAR++F  M +K+V
Sbjct: 184 CAAKGRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDV 225



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/167 (24%), Positives = 83/167 (49%), Gaps = 9/167 (5%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G +IHA++ K     +  +   L+ ++ K G    A + FDE+P R + ++  +I    
Sbjct: 542 FGTQIHAYMCKKQPMGDIALDNALVDMYAKAGEFSDAKRAFDEMPYRNVISWTSLITACG 601

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKA-STCCRSNVPLPRNLGRMVHAQILKCD 181
           +NG  E++++L  ++V  G RP+  TF  +L A   C  +N  +      M    I   D
Sbjct: 602 RNGSGEDAVTLFNRMVEDGVRPNDVTFLSLLSACGHCGLTNKGMEYFTSMMSRYGI---D 658

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM 228
            +A+   Y++ +D   +GG+   A   + ++ + N+  ++SM+   +
Sbjct: 659 PRAEH--YSSAIDLLARGGQLEDA---WKLVQKTNLKPNSSMLGAML 700


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 152/449 (33%), Positives = 245/449 (54%), Gaps = 12/449 (2%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +LP  L+    S      L+IHAH  KTG+  N  +   L+  +   G ++   ++FD+ 
Sbjct: 140 TLPYLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQG 199

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P   L ++  +I  Y K G   E+++   ++  + +R    T  ++L A +         
Sbjct: 200 PHWDLISWTTLIQAYSKMGYPSEAIAAFFRMNCTADR---MTLVVVLSACSQLGDFTLGK 256

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
           + L  M H      DV +D  L  AL+D Y+K G+   AR +F +M  KN++   SMISG
Sbjct: 257 KILAYMDHHLF---DVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISG 313

Query: 227 FMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
              QG  ++A  +FR+     ++ D V    ++   + ++        VH  + KN    
Sbjct: 314 LAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCA-NLGDLELGKWVHSYIDKNHMKA 372

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           D  + +ALVDMYAKCG ID A  VF  M+ K+V+++T+MI G+  +G  ++AL +F  M 
Sbjct: 373 DGYVANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMP 432

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
              V+P++VT +G LSAC HAGL+++GR  F+ M R Y ++P+ EHY CMVDLLGRAG +
Sbjct: 433 RMGVRPDHVTLVGVLSACSHAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLI 492

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
            +A  F  +MP  P++ VW +LL +C++H  VE+      ++ ++   +R GAY+ +SN 
Sbjct: 493 SEAEAFTNKMPIVPDASVWGSLLGACKIHAKVELGETVIQKLIEMEP-ERDGAYILMSNI 551

Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCS 491
            ++A +W    + R+ MK   + K  GCS
Sbjct: 552 YSSANRWRDALKWRKAMKQNNIKKTPGCS 580



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 179/399 (44%), Gaps = 35/399 (8%)

Query: 96  LKYAGQMFDELPQRTLSAYNYMIAGY-LKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
           L YA  + +   Q  +  +N +I      N       SL R+++  G  PD YT   +LK
Sbjct: 87  LWYASSLANFCHQNPVYIFNAIIQSLSTSNNTFTHIFSLYRQMLLIGLSPDTYTLPYLLK 146

Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE 214
           A  C +S+  +       +HA  +K  + ++  +   L+  Y   G       VFD    
Sbjct: 147 A--CSQSHAFIE---ALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGFIEAVEKVFDQGPH 201

Query: 215 KNVICSTSMISGFMSQGFVEDA-EEIFRKTVEKD----IVVYNAMIE------GYSISIE 263
            ++I  T++I  +   G+  +A    FR     D    +VV +A  +      G  I   
Sbjct: 202 WDLISWTTLIQAYSKMGYPSEAIAAFFRMNCTADRMTLVVVLSACSQLGDFTLGKKILAY 261

Query: 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMID 323
                 +VH          DV LG+AL+DMY KCG+   AR++F  M  KN+ +W SMI 
Sbjct: 262 MDHHLFDVH---------SDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMIS 312

Query: 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK 383
           G    G   +AL +F  MQ   ++P+ VT +G L++C + G ++ G+ +   +++++ MK
Sbjct: 313 GLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNH-MK 371

Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA--ALLSSCRLHDDVEMANIAA 441
                   +VD+  + GS++QA      M  K   DV++  A++    +H   + A    
Sbjct: 372 ADGYVANALVDMYAKCGSIDQAFMVFQAMKCK---DVYSYTAMIVGFAMHGKADRALAIF 428

Query: 442 NEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           +E+ ++    RP  +V L   L+A      + E R   +
Sbjct: 429 SEMPRMGV--RPD-HVTLVGVLSACSHAGLLEEGRRHFQ 464


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 142/434 (32%), Positives = 238/434 (54%), Gaps = 9/434 (2%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G  +HA + K  ++ N  I   LL ++ KCG+ + A  +F  + +R + A+  MIAG+ 
Sbjct: 363 FGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFC 422

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +N + +++L L R +   G + D    + ++ A      NV     LG ++H   +K  +
Sbjct: 423 QNRRFKDALDLFRAMEKEGVKADSDVMTSVISAGLGLE-NV----ELGHLIHGFAIKRGL 477

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           ++D  +  +LVD Y K G    A +VF  M  KN++   SMIS +   G  E +  +  +
Sbjct: 478 ESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQ 537

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALE---VHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            ++    + +  I    +++ +    L+   +H   I+     D+++ +AL+DMY KCG 
Sbjct: 538 ILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGC 597

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +  A+ +F++M ++N+ TW SMI GYG +GN  +A+ LF  M+     P+ VTFL  +++
Sbjct: 598 LKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITS 657

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H+G+V++G  +F+ M  +Y ++P+MEHYA +VDLLGRAG L+ A  F+  MP   +  
Sbjct: 658 CSHSGMVEEGLNLFQLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRS 717

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW  LL +CR H ++E+  + A+ + K+    R   YV L N       WD    LR  M
Sbjct: 718 VWLCLLFACRAHRNMELGELVADNLLKMEPA-RGSNYVPLLNLYGEVEMWDRAANLRASM 776

Query: 480 KLRGVLKDTGCSWV 493
           K RG+ K  GCSW+
Sbjct: 777 KGRGLKKSPGCSWI 790



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 111/444 (25%), Positives = 207/444 (46%), Gaps = 14/444 (3%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L + S   A     + +   +G ++H  + K   + +  +   LL ++ K G+++ A ++
Sbjct: 242 LVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKV 301

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERP-DGYTFSMILKASTCCRS 161
           FD++  + +   N MI+ ++ NG+  ++L L  K+  +GE P D +T S +L   +   S
Sbjct: 302 FDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKM-KAGETPVDSFTISSLLSGCSVVGS 360

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
                 + GR VHA+++K  ++++  + +AL+  Y K G T  A  VF  M E++V+   
Sbjct: 361 -----YDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWG 415

Query: 222 SMISGFMSQGFVEDAEEIFR----KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIK 277
           SMI+GF      +DA ++FR    + V+ D  V  ++I    + +E       +H   IK
Sbjct: 416 SMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISA-GLGLENVELGHLIHGFAIK 474

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
                DV +  +LVDMY+K G  + A  VF  M  KN+  W SMI  Y  NG P  ++ L
Sbjct: 475 RGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINL 534

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
              + +     + V+    L A      + KG+ +     R   +   ++    ++D+  
Sbjct: 535 LPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAYQIR-LQIPSDLQVENALIDMYV 593

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457
           + G L+ A      MP + N   W ++++    H + E A     E+ +         ++
Sbjct: 594 KCGCLKYAQLIFENMPRR-NLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFL 652

Query: 458 ALSNTLAAAGKWDSVTELREKMKL 481
           AL  + + +G  +    L + M++
Sbjct: 653 ALITSCSHSGMVEEGLNLFQLMRI 676



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 179/372 (48%), Gaps = 21/372 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRT-LSAYNYMIAGYL 122
           G +IH +I +   + +  +   L+ ++  C     A  +F +L  R+ + A+N MI G++
Sbjct: 161 GRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFV 220

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +NG  E+SL L     +   +    +F+    A T C     L  + GR VH  ++K + 
Sbjct: 221 ENGMWEKSLELYSLAKNENCKLVSASFT---GAFTACSHGEVL--DFGRQVHCDVIKMNF 275

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           + D  + T+L+  Y K G    A+ VFD +L+K V    +MIS F+  G   DA  ++ K
Sbjct: 276 QDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNK 335

Query: 243 T----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
                   D    ++++ G S+ + +      VH ++IK     +V + SAL+ MY KCG
Sbjct: 336 MKAGETPVDSFTISSLLSGCSV-VGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKCG 394

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
             +DA  VF  M++++V  W SMI G+ +N     AL+LF  M++  V+ +       +S
Sbjct: 395 STEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVIS 454

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKME---HYAC-MVDLLGRAGSLEQALKFVLEMPE 414
           A      V+ G  I       +++K  +E     AC +VD+  + G  E A      MP 
Sbjct: 455 AGLGLENVELGHLI-----HGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPN 509

Query: 415 KPNSDVWAALLS 426
           K N   W +++S
Sbjct: 510 K-NLVAWNSMIS 520



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 109/418 (26%), Positives = 180/418 (43%), Gaps = 56/418 (13%)

Query: 19  HYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKP 78
           H  L     TFP  L+   SLSN                    ++G  IHA I   G++ 
Sbjct: 48  HSALTTAKFTFPSLLKTCASLSNL-------------------YHGRTIHASIVTMGLQS 88

Query: 79  NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSA-----YNYMIAGYLKNGQVEESLSL 133
           +  I+  L+ +++KCG L  A Q+FD++ +   SA     +N +I GY K G  EE L  
Sbjct: 89  DPYIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGL-- 146

Query: 134 VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALV 193
                                 +  CR         GR +H  I++   + D  L TAL+
Sbjct: 147 ----------------------AQFCRMQELSWYMAGRQIHGYIIRNMFEGDPYLETALI 184

Query: 194 DSYVKGGKTSYARIVFDMMLEK-NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN 252
             Y    +   A  +F  +  + N++    MI GF+  G  E + E++     ++  + +
Sbjct: 185 GMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVS 244

Query: 253 AMIEGYSISI---ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309
           A   G   +    E      +VHC +IK  F +D  + ++L+ MYAK G ++DA++VFD 
Sbjct: 245 ASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQ 304

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKG 369
           +  K V    +MI  +  NG    AL L+  M+      +  T    LS C   G  D G
Sbjct: 305 VLDKEVELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFG 364

Query: 370 REIF-ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           R +  E ++R  SM+  +   + ++ +  + GS E A      M E+ +   W ++++
Sbjct: 365 RTVHAEVIKR--SMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKER-DVVAWGSMIA 419


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 155/459 (33%), Positives = 247/459 (53%), Gaps = 15/459 (3%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           + PS L+  I       G +IH+ I KT  + N  +   L+ ++ K G L  A  +    
Sbjct: 475 TYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRF 534

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
             + + ++  MIAGY +    +++L+  R+++  G R D    +    A + C     L 
Sbjct: 535 AGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLT---NAVSACAGLQALK 591

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
              G+ +HAQ       +D     ALV  Y K G    A + F+     + I   +++SG
Sbjct: 592 E--GQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSG 649

Query: 227 FMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETA--RKALEVHCQLIKNVF 280
           F   G  E+A  +F    R+ ++ +   + + ++  S   ETA  ++  +VH  + K  +
Sbjct: 650 FQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAAS---ETANMKQGKQVHAVITKTGY 706

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             + ++ +A++ MYAKCG I DA++ F  +  KN  +W +MI+ Y K+G  ++AL+ F  
Sbjct: 707 DSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQ 766

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           M    V+PN+VT +G LSAC H GLVDKG E FESM  +Y + PK EHY C+VD+L RAG
Sbjct: 767 MIHSNVRPNHVTLVGVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAG 826

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
            L +A  F+LEMP +P++ VW  LLS+C +H ++E+   AA+ + +L   D    YV LS
Sbjct: 827 LLSRAKDFILEMPIEPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPED-SATYVLLS 885

Query: 461 NTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           N  A   KWD+    R+KMK +GV K+ G SW+  ++ +
Sbjct: 886 NLYAVCRKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSI 924



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 105/411 (25%), Positives = 196/411 (47%), Gaps = 17/411 (4%)

Query: 60  TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIA 119
           T F G ++HA+ TK G   N  I   LL L+ KC  ++ A   F E     +  +N M+ 
Sbjct: 387 TLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLV 446

Query: 120 GYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
            Y     +  S  + R++      P+ YT+  ILK  TC R        LG  +H+QI+K
Sbjct: 447 AYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILK--TCIRLG---DLELGEQIHSQIIK 501

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
              + +  + + L+D Y K GK   A  +      K+V+  T+MI+G+    F + A   
Sbjct: 502 TSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTT 561

Query: 240 FRKTVEK-----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
           FR+ +++     ++ + NA+       ++  ++  ++H Q   + F  D+   +ALV +Y
Sbjct: 562 FRQMLDRGIRSDEVGLTNAV--SACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLY 619

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           +KCG I++A   F+  +  +   W +++ G+ ++GN  +AL +F  M    +  N  TF 
Sbjct: 620 SKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFG 679

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
            A+ A      + +G+++   + +      + E    ++ +  + GS+  A K  LE+  
Sbjct: 680 SAVKAASETANMKQGKQVHAVITKT-GYDSETEVCNAIISMYAKCGSISDAKKQFLELSM 738

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465
           K N   W A++++   H     A  + +++  +++N RP  +V L   L+A
Sbjct: 739 K-NEVSWNAMINAYSKHGFGSEALDSFDQM--IHSNVRPN-HVTLVGVLSA 785



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 104/380 (27%), Positives = 182/380 (47%), Gaps = 21/380 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G K+H+ I K G   N  +S KLL  +L  G L  A ++FDE+P+RT+  +N MI     
Sbjct: 87  GRKLHSQILKLGFDNNACLSEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELAS 146

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
                +   L  ++V+    P+  TFS +L+A   CR    +  ++   +HA+I+   + 
Sbjct: 147 RSLSGKVFCLFGRMVNENVTPNEGTFSGVLEA---CRGG-SVAFDVVEQIHARIIYQGLG 202

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
              ++   L+D Y + G    AR VFD +  K+     +MISG        +A  +F   
Sbjct: 203 KSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLF--- 259

Query: 244 VEKDIVVYNAMIEGYSIS--------IETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
              D+ V   M   Y+ S        IE+     ++H  ++K  F  D  + +ALV +Y 
Sbjct: 260 --CDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYF 317

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
             G +  A  +F +M Q++  T+ ++I+G  + G   +A+ELF  MQ   ++P+  T   
Sbjct: 318 HLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLAS 377

Query: 356 ALSACGHAGLVDKGREIFE-SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
            + AC   G +  G+++   + +  ++   K+E    +++L  +   +E AL + LE  E
Sbjct: 378 LVVACSSDGTLFSGQQLHAYTTKLGFASNDKIE--GALLNLYAKCSDIETALNYFLE-TE 434

Query: 415 KPNSDVWAALLSSCRLHDDV 434
             N  +W  +L +  L DD+
Sbjct: 435 VENVVLWNVMLVAYGLLDDL 454



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 162/356 (45%), Gaps = 15/356 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IHA I   G+  +T +   L+ L+ + G +  A ++FD L  +  S++  MI+G  KN 
Sbjct: 191 QIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNE 250

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              E++ L   +   G  P  Y FS +L A   C+    L   +G  +H  +LK    +D
Sbjct: 251 CEVEAIRLFCDMYVLGIMPTPYAFSSVLSA---CKKIESLE--IGEQLHGLVLKLGFSSD 305

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT-- 243
             +  ALV  Y   G    A  +F  M +++ +   ++I+G    G+ E A E+F++   
Sbjct: 306 TYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQL 365

Query: 244 --VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
             +E D     +++   S S  T     ++H    K  F  + K+  AL+++YAKC  I+
Sbjct: 366 DGLEPDSNTLASLVVACS-SDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIE 424

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            A   F   + +NV  W  M+  YG   +   +  +F  MQ   + PN  T+   L  C 
Sbjct: 425 TALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 484

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYAC--MVDLLGRAGSLEQALKFVLEMPEK 415
             G ++ G +I   + +      ++  Y C  ++D+  + G L+ A   ++    K
Sbjct: 485 RLGDLELGEQIHSQIIK---TSFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK 537



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 92/361 (25%), Positives = 151/361 (41%), Gaps = 63/361 (17%)

Query: 141 GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGG 200
           G RP+  T   +L+   C ++N  L    GR +H+QILK     +  L   L+D Y+  G
Sbjct: 62  GIRPNHQTLKWLLEG--CLKTNGSLDE--GRKLHSQILKLGFDNNACLSEKLLDFYLFKG 117

Query: 201 KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIV----VYNAMIE 256
               A  VFD M E+ +     MI    S+        +F + V +++      ++ ++E
Sbjct: 118 DLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGVLE 177

Query: 257 ---GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK 313
              G S++ +      ++H ++I     +   + + L+D+Y++ G +D ARRVFD +  K
Sbjct: 178 ACRGGSVAFDVVE---QIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLK 234

Query: 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF 373
           +  +W +MI G  KN    +A+ LFC M    + P    F   LSAC       K  E  
Sbjct: 235 DHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSAC-------KKIESL 287

Query: 374 ESMERDYSMKPKM----EHYAC--MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
           E  E+ + +  K+    + Y C  +V L    GSL                         
Sbjct: 288 EIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSL------------------------- 322

Query: 428 CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487
                      I+A  IF   +      Y  L N L+  G  +   EL ++M+L G+  D
Sbjct: 323 -----------ISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPD 371

Query: 488 T 488
           +
Sbjct: 372 S 372


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 159/440 (36%), Positives = 243/440 (55%), Gaps = 23/440 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H H TK G   +  I   L+ ++  CG L  A ++FD++  +++ ++  MI  Y +
Sbjct: 156 GKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQ 215

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL--GRMVHAQILKCD 181
                E++ L R++  +  +P+  T   +L A  C RS     R+L   + VH  I +  
Sbjct: 216 WDLPHEAIKLFRRMEIASVKPNEITLVNVLTA--CARS-----RDLETAKQVHKYIDETG 268

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +    VL +AL+D Y K G    AR +F+ M EKN+ C   MI+G +     E+A  +F 
Sbjct: 269 IGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFN 328

Query: 242 KT----VEKDIVVYNAMIEGYSISIETARKALEV----HCQLIKNVFFEDVKLGSALVDM 293
           +     V+ D V   +++        T   ALE+    H  + K     DV LG+ALVDM
Sbjct: 329 EMQLSGVKGDKVTMASLLIAC-----THLGALELGKWLHVYIEKEKIEVDVALGTALVDM 383

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           YAKCG I+ A RVF  M +K+V TWT++I G    G   +ALELF  MQ   V+P+ +TF
Sbjct: 384 YAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITF 443

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           +G L+AC HAGLV++G   F SM   Y ++P +EHY CMVD+LGRAG + +A   +  MP
Sbjct: 444 VGVLAACSHAGLVNEGIAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMP 503

Query: 414 EKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473
             P+  V   LLS+CR+H ++ +A  AA ++ +L+  +  G YV LSN  ++   W++  
Sbjct: 504 MAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNG-GTYVLLSNIYSSMKNWEAAK 562

Query: 474 ELREKMKLRGVLKDTGCSWV 493
           ++RE M  R + K  GCS +
Sbjct: 563 KMRELMVERNIKKPPGCSAI 582



 Score =  138 bits (348), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 177/369 (47%), Gaps = 23/369 (6%)

Query: 66  KIHAHITKTG--VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           +IHA + +T   V P +   I         G+L YA  +F+++P  T    N +I GY  
Sbjct: 58  QIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTN 117

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKA-STCCRSNVPLPRNLGRMVHAQILKCDV 182
                +++   + ++  G  PD +TF  + K+    C          G+ +H    K   
Sbjct: 118 KNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGVLCE---------GKQLHCHSTKLGF 168

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            +D  +   L++ Y   G    AR VFD M+ K+V+   +MI  +       +A ++FR+
Sbjct: 169 ASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRR 228

Query: 243 -----TVEKDIVVYNAMIE-GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
                    +I + N +     S  +ETA+   +VH  + +        L SAL+D+Y K
Sbjct: 229 MEIASVKPNEITLVNVLTACARSRDLETAK---QVHKYIDETGIGFHTVLTSALMDVYCK 285

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG    AR +F+ M +KN+F W  MI+G+ ++ +  +AL LF  MQ   V+ + VT    
Sbjct: 286 CGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASL 345

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           L AC H G ++ G+ +   +E++  ++  +     +VD+  + GS+E A++   EMPEK 
Sbjct: 346 LIACTHLGALELGKWLHVYIEKE-KIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEK- 403

Query: 417 NSDVWAALL 425
           +   W AL+
Sbjct: 404 DVMTWTALI 412



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 87/192 (45%), Gaps = 19/192 (9%)

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYA--KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
           ++H Q+++   F D    S +V   A    G +  AR VF+ +     FT  S+I GY  
Sbjct: 58  QIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTN 117

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF-ESMERDYSMKPKM 386
              P QA+  + +M    + P+  TF     +C   G++ +G+++   S +  ++    +
Sbjct: 118 KNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSC---GVLCEGKQLHCHSTKLGFASDAYI 174

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL----------SSCRLHDDVEM 436
           ++   ++++    G L  A K   +M  K +   WA ++           + +L   +E+
Sbjct: 175 QN--TLMNMYSNCGCLVSARKVFDKMVNK-SVVSWATMIGAYAQWDLPHEAIKLFRRMEI 231

Query: 437 ANIAANEIFKLN 448
           A++  NEI  +N
Sbjct: 232 ASVKPNEITLVN 243


>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 141/437 (32%), Positives = 255/437 (58%), Gaps = 13/437 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA+I K+       I   +++++ +CG++  + ++F  + +R +  +N M++ +++
Sbjct: 341 GRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQ 400

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  +E L LV ++   G   D  T + +L  ++  RS     + +G+  HA +++  ++
Sbjct: 401 NGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRS-----QEIGKQAHAYLIRHGIQ 455

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDM--MLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
            +  +   L+D Y K G  + A+ +F+     +++     +MI+G+   G  E+   +FR
Sbjct: 456 FEG-MDGYLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFR 514

Query: 242 KTVEKDI---VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
           K +E+++    V  A I      + T     ++H   I+    ++V +G+AL+DMY+K G
Sbjct: 515 KMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIRCFLNQNVFVGTALLDMYSKSG 574

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            I  A  VF    +KN  T+T+MI  YG++G   +AL LF  M    ++P+ VTF+  LS
Sbjct: 575 AITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAMLGSGIKPDSVTFVAILS 634

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC +AGLVD+G  IF+SMER+Y ++P  EHY C+ D+LGR G + +A +FV  + E+ N+
Sbjct: 635 ACSYAGLVDEGLRIFQSMEREYKIQPSSEHYCCVADMLGRVGRVXEAYEFVKGLGEEGNT 694

Query: 419 -DVWAALLSSCRLHDDVEMANIAANEIFKL-NANDRPGAYVALSNTLAAAGKWDSVTELR 476
             +W +LL +CR+H + E+  + AN++ ++   +   G +V LSN  AA G WD+V  +R
Sbjct: 695 FRIWGSLLGACRIHGEFELGKVVANKLLEMEKGSXLTGYHVLLSNIYAAEGNWDNVDRVR 754

Query: 477 EKMKLRGVLKDTGCSWV 493
           ++M+ +G++K+ GCSWV
Sbjct: 755 KEMRQKGLMKEAGCSWV 771



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 187/402 (46%), Gaps = 18/402 (4%)

Query: 87  LILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE-RPD 145
           + ++ + G + +A ++FD   +R    +N MI GY++N    E++ L  +++ S +   D
Sbjct: 262 IFMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLD 321

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
             TF   L A +  +       +LGR +HA ILK       V+  A++  Y + G    +
Sbjct: 322 DVTFLSALTAISQLQW-----LDLGRQLHAYILKSSTILQVVILNAIIVMYSRCGSIGTS 376

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAE----EIFRKTVEKDIVVYNAMIEGYSIS 261
             VF  MLE++V+   +M+S F+  G  ++      E+ ++    D V   A++   S +
Sbjct: 377 FKVFSNMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLAS-N 435

Query: 262 IETARKALEVHCQLIKN-VFFEDVKLGSALVDMYAKCGKIDDARRVFDH--MQQKNVFTW 318
           + +     + H  LI++ + FE   +   L+DMYAK G I  A+++F+      ++  TW
Sbjct: 436 LRSQEIGKQAHAYLIRHGIQFEG--MDGYLIDMYAKSGLITTAQQLFEKNSXYDRDEATW 493

Query: 319 TSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER 378
            +MI GY +NG   +   +F  M E  V+PN VT    L AC   G +  G++I     R
Sbjct: 494 NAMIAGYTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLGKQIHGFAIR 553

Query: 379 DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMAN 438
            + +   +     ++D+  ++G++  A     E  EK NS  +  ++ S   H   E A 
Sbjct: 554 CF-LNQNVFVGTALLDMYSKSGAITYAENVFAETLEK-NSVTYTTMILSYGQHGMGERAL 611

Query: 439 IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
              + +           +VA+ +  + AG  D    + + M+
Sbjct: 612 SLFHAMLGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSME 653



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 164/349 (46%), Gaps = 27/349 (7%)

Query: 99  AGQMFDELPQRTLSAYNYMIAGYLKNGQ-VEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           A  +FD +P+ T   +N +I G++ N   ++  L   R   S   + D YTFS  LKA  
Sbjct: 56  ALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFSSTLKACA 115

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY------VKGGKTSY------- 204
             RS       LG+ +H  +L+    +  ++Y +L++ Y      V    T+Y       
Sbjct: 116 QARS-----LKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNCDL 170

Query: 205 ARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI-----VVYNAMIEGYS 259
            R VFD M ++NV+   +MIS ++    + +A ++FR  +   I        N     + 
Sbjct: 171 VRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAVWR 230

Query: 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWT 319
           ++       L      + + + +D  + S+ + MYA+ G +D AR +FD   ++N   W 
Sbjct: 231 MNDYDNANVLYGLVVKLGSDYVDDFFVVSSAIFMYAELGCVDFAREIFDCCLERNTEVWN 290

Query: 320 SMIDGYGKNGNPNQALELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER 378
           +MI GY +N  P +A++LF  +M+      + VTFL AL+A      +D GR++   + +
Sbjct: 291 TMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAYILK 350

Query: 379 DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
             ++   +   A +V +  R GS+  + K    M E+ +   W  ++S+
Sbjct: 351 SSTILQVVILNAIIV-MYSRCGSIGTSFKVFSNMLER-DVVTWNTMVSA 397


>gi|449469094|ref|XP_004152256.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Cucumis sativus]
          Length = 611

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 159/462 (34%), Positives = 255/462 (55%), Gaps = 42/462 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++H+ I K G   ++ +S  LL ++ KCG +  A Q+FDE+P R   ++  ++  + K  
Sbjct: 24  ELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASILTAHNKAL 83

Query: 126 QVEESLSLVRKLVS-SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
               +LS++  + +  G +PD + F+ I++A   C S   L   LG+ VHA+ +      
Sbjct: 84  IPRRTLSMLNTMFTHDGLQPDHFVFACIVRA---CSSLGYL--RLGKQVHARFMLSFFCD 138

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
           D+V+ ++L+D Y K G+   AR VFD +L KN +  TSMISG+   G   +A ++F +  
Sbjct: 139 DEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYARSGRKCEAMDLFLQAP 198

Query: 245 EKDIVVYNAMIEG--------YSISI--ETARKAL------------------------- 269
            +++  + A+I G        YS S+  E  R+ +                         
Sbjct: 199 VRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSSVVGGCANLALLELGK 258

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
           ++H  +I   F   + + +ALVDMYAKC  I  A+ +F  M +K+V +WTS+I G  ++G
Sbjct: 259 QIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRKDVISWTSIIVGTAQHG 318

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
              +AL L+  M    ++PN VTF+G L AC HAGLV +GRE+F SM  DYS+ P ++HY
Sbjct: 319 KAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELFRSMTTDYSINPSLQHY 378

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
            C++DLL R+G L++A   + ++P KP+   WA+LLS+C  H+++EM    A+ +  L  
Sbjct: 379 TCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNNLEMGVRIADRVLDLKP 438

Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
            D P  Y+ LSN  A A  W SV+++R+ M    V K+ G S
Sbjct: 439 ED-PSTYILLSNVYAGAEMWGSVSKVRKLMSSMEVRKEPGYS 479



 Score = 65.1 bits (157), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 81/165 (49%), Gaps = 3/165 (1%)

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
           ++A  A E+H Q+IK  F +   L + L+D+Y KCG I  A ++FD M  ++  +W S++
Sbjct: 17  QSASAAGELHSQIIKAGFDKSSLLSNTLLDVYGKCGLIPQALQLFDEMPNRDHVSWASIL 76

Query: 323 DGYGKNGNPNQALELF-CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
             + K   P + L +   M     +QP++  F   + AC   G +  G+++       + 
Sbjct: 77  TAHNKALIPRRTLSMLNTMFTHDGLQPDHFVFACIVRACSSLGYLRLGKQVHARFMLSFF 136

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
              ++   + ++D+  + G  + A + V +     NS  W +++S
Sbjct: 137 CDDEVVK-SSLIDMYTKCGQPDDA-RAVFDSILFKNSVSWTSMIS 179



 Score = 62.4 bits (150), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 76/351 (21%), Positives = 149/351 (42%), Gaps = 40/351 (11%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA    +    +  +   L+ ++ KCG    A  +FD +  +   ++  MI+GY +
Sbjct: 124 GKQVHARFMLSFFCDDEVVKSSLIDMYTKCGQPDDARAVFDSILFKNSVSWTSMISGYAR 183

Query: 124 NGQVEESLSL-----VRKLVS-----SGERPDG---YTFS---------------MILKA 155
           +G+  E++ L     VR L S     SG    G   Y+FS               ++L +
Sbjct: 184 SGRKCEAMDLFLQAPVRNLFSWTALISGLIQSGHGIYSFSLFNEMRREGIDIVDPLVLSS 243

Query: 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
                +N+ L   LG+ +H  ++    ++   +  ALVD Y K      A+ +F  M  K
Sbjct: 244 VVGGCANLAL-LELGKQIHGLVIALGFESCLFISNALVDMYAKCSDILAAKDIFYRMPRK 302

Query: 216 NVICSTSMISGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV 271
           +VI  TS+I G    G  E+A    +E+    ++ + V +  ++   S +   +R     
Sbjct: 303 DVISWTSIIVGTAQHGKAEEALTLYDEMVLSRIKPNEVTFVGLLYACSHAGLVSRGRELF 362

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNGN 330
                       ++  + L+D+ ++ G +D+A  + D +  K +  TW S++    ++ N
Sbjct: 363 RSMTTDYSINPSLQHYTCLLDLLSRSGHLDEAENLLDKIPFKPDEPTWASLLSACMRHNN 422

Query: 331 PNQALELFCMMQECCVQP----NYVTFLGALSACGHAGLVDKGREIFESME 377
               + +   + +  ++P     Y+      +     G V K R++  SME
Sbjct: 423 LEMGVRIADRVLD--LKPEDPSTYILLSNVYAGAEMWGSVSKVRKLMSSME 471


>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
          Length = 673

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 156/442 (35%), Positives = 242/442 (54%), Gaps = 17/442 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH  + K G+  N+ IS  LL ++ KC  ++ A ++FDEL    +  +  MI GY +
Sbjct: 242 GRWIHGSVIKYGLSTNSFISASLLDMYAKCEKVEDARRVFDELEFVDIVLWTAMIVGYTQ 301

Query: 124 NGQVEESLSLV--RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           N +  ++L L   +K VS    P+  T + ++ AS   R    LP  LGR VHA  +K  
Sbjct: 302 NKRPLDALQLFLHKKFVSI--VPNSVTIATVISASAQLRH---LP--LGRSVHAIGVKLG 354

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
               DV+  ALVD Y K      A  +F  +L K+V+   SM++G+   G   ++  +F 
Sbjct: 355 TMESDVVRNALVDMYAKCQALPEANSIFGRILIKDVVAWNSMMAGYSENGMANESLVLFN 414

Query: 242 KT----VEKD-IVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
           +     +  D I V NA+     ++     K    H   IK  F  ++ + +AL+++Y+K
Sbjct: 415 RMRMQGISPDAISVVNALSACVCLADLHIGKGF--HTYAIKYAFMSNIYVNTALLNLYSK 472

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           C  +  A+RVF+ M  +N  TW++MI GYG  G+   +++LF  M +  + PN V F   
Sbjct: 473 CADLPSAQRVFNDMTDRNSVTWSAMIGGYGMQGDSAGSIDLFNEMLKENIHPNEVVFTSI 532

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           LSAC H G+V  G+E F+SM R +++ P M+HYACMVD++ RAG+LE+AL+F+  MP K 
Sbjct: 533 LSACSHTGMVTAGKEYFDSMARHFNITPSMKHYACMVDVMARAGNLEEALEFIQNMPIKA 592

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
              VW + L  C+LH  +E    A  ++  L+  + P  YV +SN   + G+WD    +R
Sbjct: 593 GISVWGSFLHGCKLHSRLEFGEEAIKKMAALHP-ETPDFYVLMSNLYTSYGRWDKSQTIR 651

Query: 477 EKMKLRGVLKDTGCSWVGTESG 498
             M+ +G++K  GCS VG E+G
Sbjct: 652 RWMQEQGLVKLPGCSSVGHENG 673



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/325 (29%), Positives = 153/325 (47%), Gaps = 33/325 (10%)

Query: 85  KLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL---VRKLVSSG 141
           KLL  +   G L  A  + D  P+    AY  M+   +  G   ++++L   +R+   + 
Sbjct: 60  KLLSCYAALGDLASARGVLDGTPRPDAYAYRVMLGWLVDAGSHADAVALHRDMRRRCPAA 119

Query: 142 ERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK 201
            + D    S+ LKA  C RS        GR +H  ++K    AD  +  +LVD Y K G 
Sbjct: 120 AQAD-VVLSLALKA--CVRSA---DFRYGRRLHCDVVKAG-GADGFVMNSLVDMYAKAGD 172

Query: 202 TSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKD----------IVVY 251
              AR VFD + E+NV+  TSM+SG +  G  E+   +F +  + +          ++  
Sbjct: 173 LENARKVFDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAA 232

Query: 252 NAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311
            AM+ G         +   +H  +IK     +  + ++L+DMYAKC K++DARRVFD ++
Sbjct: 233 CAMLGGL-------HQGRWIHGSVIKYGLSTNSFISASLLDMYAKCEKVEDARRVFDELE 285

Query: 312 QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371
             ++  WT+MI GY +N  P  AL+LF   +   + PN VT    +SA      +  GR 
Sbjct: 286 FVDIVLWTAMIVGYTQNKRPLDALQLFLHKKFVSIVPNSVTIATVISASAQLRHLPLGRS 345

Query: 372 I------FESMERDYSMKPKMEHYA 390
           +        +ME D      ++ YA
Sbjct: 346 VHAIGVKLGTMESDVVRNALVDMYA 370



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 117/245 (47%), Gaps = 16/245 (6%)

Query: 190 TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR-------K 242
           T L+  Y   G  + AR V D     +      M+   +  G   DA  + R        
Sbjct: 59  TKLLSCYAALGDLASARGVLDGTPRPDAYAYRVMLGWLVDAGSHADAVALHRDMRRRCPA 118

Query: 243 TVEKDIVVYNAMIEGYSISIETA--RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
             + D+V+  A+       + +A  R    +HC ++K    +   + S LVDMYAK G +
Sbjct: 119 AAQADVVLSLAL----KACVRSADFRYGRRLHCDVVKAGGADGFVMNS-LVDMYAKAGDL 173

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           ++AR+VFD + ++NV +WTSM+ G  +NG   + L LF  M++  V P+  T +  L+AC
Sbjct: 174 ENARKVFDRVPERNVVSWTSMLSGSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAAC 233

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
              G + +GR I  S+ + Y +       A ++D+  +   +E A +   E+ E  +  +
Sbjct: 234 AMLGGLHQGRWIHGSVIK-YGLSTNSFISASLLDMYAKCEKVEDARRVFDEL-EFVDIVL 291

Query: 421 WAALL 425
           W A++
Sbjct: 292 WTAMI 296


>gi|115465982|ref|NP_001056590.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|7363286|dbj|BAA93030.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113594630|dbj|BAF18504.1| Os06g0112000 [Oryza sativa Japonica Group]
 gi|215737111|dbj|BAG96040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 734

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 154/429 (35%), Positives = 237/429 (55%), Gaps = 13/429 (3%)

Query: 68  HAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV 127
           HA   ++G++   N++  +L  + KCG ++ A  +FD +P +   ++N MI GY +NG  
Sbjct: 184 HAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDS 243

Query: 128 EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV 187
            E+L+L  ++V  G      T   +L A   C     L    G  VH  +++  + ++  
Sbjct: 244 REALALFNRMVEEGV---DVTDVSVLAALQACGELGCLDE--GMRVHELLVRIGLDSNVS 298

Query: 188 LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK----T 243
           +  AL+  Y K  +   A  VFD +  +  +   +MI G    G  EDA  +F +     
Sbjct: 299 VMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLEN 358

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
           V+ D     ++I   +  I    +A  +H   I+    +DV + +AL+DMYAKCG+++ A
Sbjct: 359 VKPDSFTLVSVIPALA-DISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIA 417

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
           R +F+  ++++V TW +MI GYG +G    A+ELF  M+   + PN  TFL  LSAC HA
Sbjct: 418 RILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHA 477

Query: 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA 423
           GLVD+GRE F SM+ DY ++P MEHY  MVDLLGRAG L++A  F+ +MP  P   V+ A
Sbjct: 478 GLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGA 537

Query: 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGAY-VALSNTLAAAGKWDSVTELREKMKLR 482
           +L +C+LH +VE+A  +A +IF+L   +  G Y V L+N  A A  W  V  +R  M+  
Sbjct: 538 MLGACKLHKNVELAEESAQKIFELGPQE--GVYHVLLANIYANASMWKDVARVRTAMEKN 595

Query: 483 GVLKDTGCS 491
           G+ K  G S
Sbjct: 596 GLQKTPGWS 604



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 148/307 (48%), Gaps = 23/307 (7%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +HA +   G+      +  L  ++ KC     A ++FD +P R   A+N ++AGY +
Sbjct: 78  GRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYAR 137

Query: 124 NGQVEESLSL-VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           NG    ++ + VR     GERPD  T   +L A    R+            HA  ++  +
Sbjct: 138 NGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACRE-----AHAFAIRSGL 192

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           +    + TA++D+Y K G    AR+VFD M  KN +   +MI G+   G   +A  +F +
Sbjct: 193 EELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNR 252

Query: 243 TVEKDIVVYNAMIEGYSISIETARKA----------LEVHCQLIKNVFFEDVKLGSALVD 292
            VE+ + V +       +S+  A +A          + VH  L++     +V + +AL+ 
Sbjct: 253 MVEEGVDVTD-------VSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALIT 305

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           MY+KC ++D A  VFD + ++   +W +MI G  +NG    A+ LF  MQ   V+P+  T
Sbjct: 306 MYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFT 365

Query: 353 FLGALSA 359
            +  + A
Sbjct: 366 LVSVIPA 372



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 127/254 (50%), Gaps = 11/254 (4%)

Query: 130 SLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLY 189
           +L+    + S+G  P   TF+ +LK    C +   L    GR VHAQ+    + ++ +  
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLK---LCAARGDLA--TGRAVHAQLAARGIDSEALAA 97

Query: 190 TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK--- 246
           TAL + Y K  + + AR VFD M  ++ +   ++++G+   G    A E+  +  E+   
Sbjct: 98  TALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGE 157

Query: 247 --DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDAR 304
             D +   +++     +        E H   I++   E V + +A++D Y KCG I  AR
Sbjct: 158 RPDSITLVSVLP-ACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAAR 216

Query: 305 RVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG 364
            VFD M  KN  +W +MIDGY +NG+  +AL LF  M E  V    V+ L AL ACG  G
Sbjct: 217 VVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELG 276

Query: 365 LVDKGREIFESMER 378
            +D+G  + E + R
Sbjct: 277 CLDEGMRVHELLVR 290



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 148/323 (45%), Gaps = 45/323 (13%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           +T  S+ +ALQ          G+++H  + + G+  N ++   L+ ++ KC  +  A  +
Sbjct: 260 VTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHV 319

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           FDEL +RT  ++N MI G  +NG  E+++ L  ++     +PD +T   ++ A     ++
Sbjct: 320 FDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPA----LAD 375

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
           +  P    R +H   ++  +  D  + TAL+D Y K G+ + ARI+F+   E++VI   +
Sbjct: 376 ISDPLQ-ARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNA 434

Query: 223 MISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
           MI G+ S GF + A E+F +     IV      E   +S+ +A       C         
Sbjct: 435 MIHGYGSHGFGKAAVELFEEMKSIGIVPN----ETTFLSVLSA-------C--------- 474

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQK-----NVFTWTSMIDGYGKNGNPNQALEL 337
                       +  G +D+ R  F  M++       +  + +M+D  G+ G  ++A   
Sbjct: 475 ------------SHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEA--- 519

Query: 338 FCMMQECCVQPNYVTFLGALSAC 360
           +  +Q+  + P    +   L AC
Sbjct: 520 WAFIQKMPMDPGLSVYGAMLGAC 542


>gi|449449649|ref|XP_004142577.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 589

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 154/471 (32%), Positives = 248/471 (52%), Gaps = 48/471 (10%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IHA+  + G+     +  KLL L      L YA  +FD++P+ ++  YN  I  +   G
Sbjct: 6   QIHAYSLRNGLDHTKFLIEKLLQL----PDLPYACTLFDQIPKPSVYLYNKFIQTFSSIG 61

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
                  L  ++ S G  P+ Y+F+ +  A     +  P     G+M+H+   K    +D
Sbjct: 62  HPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYP-----GQMLHSHFCKSGFASD 116

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
               TAL+D Y K G    AR +FD M  +++    S+I+G+   G +E A E+F K   
Sbjct: 117 MFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPV 176

Query: 246 KDIVVYNAMIEGYSISIETARKALEVHCQL------------------------------ 275
           ++++ + A+I GY+ + + A KALE+   L                              
Sbjct: 177 RNVISWTALISGYAQNGKYA-KALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGK 235

Query: 276 ------IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM-QQKNVFTWTSMIDGYGKN 328
                   N FF++  + +A+++++A+CG I++A++VFD +  ++N+ +W +MI G   +
Sbjct: 236 RIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVH 295

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G    AL+L+  M    ++P+ VTF+G L AC H G+V +GR++FESME  + + PK+EH
Sbjct: 296 GRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEH 355

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
           Y C+VDLLGRAG L++A   +  MP  P+S +W  LL +C  H +VE+  +AA  +FKL 
Sbjct: 356 YGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLE 415

Query: 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
             + PG YV LSN  A AG W  V  LR+ MK   + K  G S++    G+
Sbjct: 416 PWN-PGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIEVGDGI 465



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 160/359 (44%), Gaps = 48/359 (13%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H+H  K+G   +      LL ++ K G L+ A Q+FDE+P R +  +N +IAGY +
Sbjct: 101 GQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYAR 160

Query: 124 NGQVEESLSL-----VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
           +G +E +L L     VR ++S      GY              N    + L   +  +  
Sbjct: 161 SGHMEAALELFNKMPVRNVISWTALISGYA------------QNGKYAKALEMFIGLENE 208

Query: 179 KCDVKADDVLYTALVDSYVKGGK-------TSYARIVFDMMLEKNVICSTSMISGFMSQG 231
           K   K ++V   +++ +  + G         +YAR   +    KN   S +++      G
Sbjct: 209 K-GTKPNEVSIASVLPACSQLGALDIGKRIEAYAR---NNGFFKNAYVSNAVLELHARCG 264

Query: 232 FVEDAEEIFRKTVEK-DIVVYNAMIEGYSISIETARKALEVHCQ-LIKNVFFEDVKLGSA 289
            +E+A+++F +   K ++  +N MI G ++       AL+++ Q LI+ +  +DV     
Sbjct: 265 NIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCI-DALQLYDQMLIRKMRPDDV----T 319

Query: 290 LVDMYAKC---GKIDDARRVFDHMQQK-----NVFTWTSMIDGYGKNGNPNQALELFCMM 341
            V +   C   G + + R++F+ M+ K      +  +  ++D  G+ G   +A  L   +
Sbjct: 320 FVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNL---I 376

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           Q   + P+ V +   L AC   G V+ G    ES+ +     P   +Y  + ++   AG
Sbjct: 377 QNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPG--NYVILSNIYALAG 433


>gi|225446273|ref|XP_002266689.1| PREDICTED: pentatricopeptide repeat-containing protein At2g34400
           [Vitis vinifera]
 gi|296090299|emb|CBI40118.3| unnamed protein product [Vitis vinifera]
          Length = 618

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 148/442 (33%), Positives = 247/442 (55%), Gaps = 15/442 (3%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G   H+ + K+G+  + ++   L+ ++ +CG L  A ++FDE+ ++ L ++N MI+GY 
Sbjct: 144 HGQCAHSGVLKSGLCADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYS 203

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           + G   +++ L  ++  +G  PD  T   IL A   C     L   LG  +   +++ ++
Sbjct: 204 RMGYAGDAVGLFGEMRDAGFEPDEMTLVSILGA---CGDLGDL--GLGSWIEGFVVENEM 258

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             +  + +AL+  Y K G  S AR VFD M++K+V+   +MI+G+   G  ++A  +F  
Sbjct: 259 DLNSFVGSALIGMYGKCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSG 318

Query: 243 TVEK-----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
             E       I +   +    SI      K L+ +    +     D+ + +AL+DMYAKC
Sbjct: 319 MRESGVNPDKITLVGVLSACASIGALDFGKWLDTYAS--ERGLQNDIYVSTALIDMYAKC 376

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE--CCVQPNYVTFLG 355
           G +DDA RVF+ M QKN  +W +MI     +G P ++L LF  M +    V+PN ++F+G
Sbjct: 377 GSLDDALRVFEDMPQKNEVSWNAMISALAFHGRPQESLSLFKRMSKEGGAVRPNDISFIG 436

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            LSAC HAGLVD+GR++F+ M   + + PK+EH++CMVDLL RAG + +A  F+ +MPEK
Sbjct: 437 VLSACVHAGLVDEGRQLFDLMSSSFGLVPKIEHHSCMVDLLARAGHVHEAWDFIEKMPEK 496

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
           P+  V  ALL +C+   +V+++    + + ++   +  G Y+  S   A   +WD    +
Sbjct: 497 PDEVVLGALLGACQKRRNVDVSERVMHMLLEMEPLN-SGNYIISSKIFANMKRWDDSARM 555

Query: 476 REKMKLRGVLKDTGCSWVGTES 497
           R  M+ RGV K  GCSW+  E+
Sbjct: 556 RVLMRQRGVTKTPGCSWIEIEN 577



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/376 (29%), Positives = 189/376 (50%), Gaps = 27/376 (7%)

Query: 66  KIHAHITKTGV-KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           +IH  +    + KPN      LL   +       A  +F ++P     A+N MI G    
Sbjct: 49  QIHTQMIINAIHKPNF-----LLHRFIDLKDFNNASLLFSQIPYPNEYAFNIMIRGLTTT 103

Query: 125 GQ-VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            Q    ++    ++   G RP+ +T+  +  A   C + + L  N G+  H+ +LK  + 
Sbjct: 104 WQKFNLTIEFYYQMKDFGIRPNNFTYPFVFIA---CANLLVL--NHGQCAHSGVLKSGLC 158

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           AD  +  +L+  Y + G+   AR VFD + EK+++   SMISG+   G+  DA  +F + 
Sbjct: 159 ADGHVRHSLITMYSRCGELGCARRVFDEISEKDLVSWNSMISGYSRMGYAGDAVGLFGEM 218

Query: 244 ----VEKD----IVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
                E D    + +  A  +   + + +  +   V  ++  N F     +GSAL+ MY 
Sbjct: 219 RDAGFEPDEMTLVSILGACGDLGDLGLGSWIEGFVVENEMDLNSF-----VGSALIGMYG 273

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KCG +  ARRVFD M +K+V TW +MI GY +NG  ++A+ LF  M+E  V P+ +T +G
Sbjct: 274 KCGDLSSARRVFDRMVKKDVVTWNAMITGYAQNGVSDEAIILFSGMRESGVNPDKITLVG 333

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            LSAC   G +D G+ + ++   +  ++  +     ++D+  + GSL+ AL+   +MP+K
Sbjct: 334 VLSACASIGALDFGKWL-DTYASERGLQNDIYVSTALIDMYAKCGSLDDALRVFEDMPQK 392

Query: 416 PNSDVWAALLSSCRLH 431
            N   W A++S+   H
Sbjct: 393 -NEVSWNAMISALAFH 407


>gi|297843412|ref|XP_002889587.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335429|gb|EFH65846.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 558

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 155/439 (35%), Positives = 242/439 (55%), Gaps = 12/439 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+ IH    K G+  +  ++  L+ ++ + G ++ A ++FDE+P R    +  ++ GYLK
Sbjct: 128 GMLIHGLAMKNGLDKDDYVAPSLVEMYAQFGTMESAQKVFDEMPVRNSVLWGVLMKGYLK 187

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA-QILKCDV 182
             +  E   L   +  +G   D  T   ++KA      NV   +  G+ VH   I +  +
Sbjct: 188 YSKDSEVFRLFYLMRDTGLALDALTLICLVKAC----GNVSAGKE-GKCVHGLSIRRSFI 242

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
                L  +++D YVK      AR +F+  +E+NV+  T++ISGF       +A ++FR+
Sbjct: 243 DQSGYLEASIIDMYVKCRLLDNARKLFETSVERNVVMWTTLISGFAKCERAVEAIDLFRQ 302

Query: 243 TVEKDIVVYNAMIEGYSIS---IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            + + I+  +  +    +S   + + R    VH  +I+N    D    ++ +D YA+CG 
Sbjct: 303 MLGESILPNHCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDTYARCGN 362

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I  AR+VFD M ++NV +W+SMI+ +G NG   +AL+ F  M+   + PN VTF+  LSA
Sbjct: 363 IQMARKVFDMMPKRNVISWSSMINAFGINGLFEEALDCFDNMKSQNLVPNSVTFVSLLSA 422

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H+G V +G + FESM RDY + P+ EHYACMVDLLGRAG + +A  F+  MP KP + 
Sbjct: 423 CSHSGNVKEGWKQFESMTRDYGLVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMAS 482

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
            W ALLS+CR+H +V++A   A ++  +   D    YV LSN  A AG W+ V  +R KM
Sbjct: 483 AWGALLSACRIHKEVDLAGEIAEKLLSMEP-DESSVYVLLSNIYADAGMWEMVNCVRHKM 541

Query: 480 KLRGVLKDTGCSWVGTESG 498
            ++G  K  G S   TE G
Sbjct: 542 GIKGYRKPMGLS--ATEGG 558



 Score =  112 bits (280), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 86/374 (22%), Positives = 179/374 (47%), Gaps = 23/374 (6%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP--QRTLSAYNYMIAGYLK 123
           ++HA +   G +    +   L   +++   L +A   FD +P  +R   ++N +++GY K
Sbjct: 25  QVHAKVIIHGFQDEVVLGSSLTNAYIQSNRLDFATASFDRIPCWKRNRHSWNTILSGYSK 84

Query: 124 NGQV--EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           +      + L L  ++    +  D +     +KA       + L  N G ++H   +K  
Sbjct: 85  SKSCYYSDVLLLYNRMRRHCDGVDSFNLVFAIKACV----GLGLLEN-GMLIHGLAMKNG 139

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +  DD +  +LV+ Y + G    A+ VFD M  +N +    ++ G++   + +D+ E+FR
Sbjct: 140 LDKDDYVAPSLVEMYAQFGTMESAQKVFDEMPVRNSVLWGVLMKGYLK--YSKDS-EVFR 196

Query: 242 -------KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK-LGSALVDM 293
                    +  D +    +++    ++   ++   VH   I+  F +    L ++++DM
Sbjct: 197 LFYLMRDTGLALDALTLICLVKACG-NVSAGKEGKCVHGLSIRRSFIDQSGYLEASIIDM 255

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           Y KC  +D+AR++F+   ++NV  WT++I G+ K     +A++LF  M    + PN+ T 
Sbjct: 256 YVKCRLLDNARKLFETSVERNVVMWTTLISGFAKCERAVEAIDLFRQMLGESILPNHCTL 315

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
              L +C   G +  G+ +   M R+  ++    ++   +D   R G+++ A K V +M 
Sbjct: 316 AAILVSCSSLGSLRHGKSVHGYMIRN-GIEMDAVNFTSFIDTYARCGNIQMARK-VFDMM 373

Query: 414 EKPNSDVWAALLSS 427
            K N   W++++++
Sbjct: 374 PKRNVISWSSMINA 387



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 128/272 (47%), Gaps = 26/272 (9%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM--LEKNVICSTSMISGFM 228
           + VHA+++    + + VL ++L ++Y++  +  +A   FD +   ++N     +++SG+ 
Sbjct: 24  QQVHAKVIIHGFQDEVVLGSSLTNAYIQSNRLDFATASFDRIPCWKRNRHSWNTILSGY- 82

Query: 229 SQGFVEDAEEIFRKTVEKDIVVYNAM------IEGYS--------ISIETARKALEVHCQ 274
                  ++  +   V   +++YN M      ++ ++        + +      + +H  
Sbjct: 83  -----SKSKSCYYSDV---LLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGMLIHGL 134

Query: 275 LIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQA 334
            +KN   +D  +  +LV+MYA+ G ++ A++VFD M  +N   W  ++ GY K    ++ 
Sbjct: 135 AMKNGLDKDDYVAPSLVEMYAQFGTMESAQKVFDEMPVRNSVLWGVLMKGYLKYSKDSEV 194

Query: 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394
             LF +M++  +  + +T +  + ACG+     +G+ +     R   +       A ++D
Sbjct: 195 FRLFYLMRDTGLALDALTLICLVKACGNVSAGKEGKCVHGLSIRRSFIDQSGYLEASIID 254

Query: 395 LLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           +  +   L+ A K + E   + N  +W  L+S
Sbjct: 255 MYVKCRLLDNARK-LFETSVERNVVMWTTLIS 285



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 45/172 (26%), Positives = 87/172 (50%), Gaps = 16/172 (9%)

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM--QQKNVFTWTS 320
           +T     +VH ++I + F ++V LGS+L + Y +  ++D A   FD +   ++N  +W +
Sbjct: 18  KTLHHTQQVHAKVIIHGFQDEVVLGSSLTNAYIQSNRLDFATASFDRIPCWKRNRHSWNT 77

Query: 321 MIDGYGKNGNP--NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF----- 373
           ++ GY K+ +   +  L L+  M+  C   +    + A+ AC   GL++ G  I      
Sbjct: 78  ILSGYSKSKSCYYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGMLIHGLAMK 137

Query: 374 ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
             +++D  + P       +V++  + G++E A K   EMP + NS +W  L+
Sbjct: 138 NGLDKDDYVAPS------LVEMYAQFGTMESAQKVFDEMPVR-NSVLWGVLM 182



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 30/125 (24%), Positives = 62/125 (49%), Gaps = 9/125 (7%)

Query: 33  LQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLK 92
           L N+ +L+  L + S   +L+H         G  +H ++ + G++ +       +  + +
Sbjct: 309 LPNHCTLAAILVSCSSLGSLRH---------GKSVHGYMIRNGIEMDAVNFTSFIDTYAR 359

Query: 93  CGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
           CG ++ A ++FD +P+R + +++ MI  +  NG  EE+L     + S    P+  TF  +
Sbjct: 360 CGNIQMARKVFDMMPKRNVISWSSMINAFGINGLFEEALDCFDNMKSQNLVPNSVTFVSL 419

Query: 153 LKAST 157
           L A +
Sbjct: 420 LSACS 424


>gi|224129982|ref|XP_002320719.1| predicted protein [Populus trichocarpa]
 gi|222861492|gb|EEE99034.1| predicted protein [Populus trichocarpa]
          Length = 643

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 153/476 (32%), Positives = 251/476 (52%), Gaps = 62/476 (13%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH  + K     +  +   L+  ++KCG L  A Q+FD +P+R   +YN MI GY+K
Sbjct: 146 GMQIHGLLKKLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSMIDGYVK 205

Query: 124 NGQVEESLSLV-------RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
            G+++ +  +        R L+S      GY  S                   G +V  Q
Sbjct: 206 GGRIDLARVVFDCIPLEERNLISWNSLIRGYAQS-----------------EDGILVAWQ 248

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
           +     + D + + +++D  VK G+   A+ +FD M  ++++   +MI G+   G V+ A
Sbjct: 249 LFAKMPERDLISWNSMIDGCVKCGRMEDAQGLFDRMPNRDIVSWANMIDGYAKNGRVDIA 308

Query: 237 EEIFRKTVEKDIVVYNAMIEGY--------------------SISIETAR---------- 266
             +F +  E+D+V YNAM+ GY                    +  ++ A           
Sbjct: 309 RSLFDEMPERDVVAYNAMMGGYVQNGYCMEALGIFYGMQSDGNFLLDNATLLIALSAIAQ 368

Query: 267 -----KALEVHCQLIKNVFFE-DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
                K + +H + I+ + F  D +LG AL+DMY+KCG I++A  VF+++++K+V  W +
Sbjct: 369 LGHIDKGVAIH-RFIEEIGFSLDGRLGVALIDMYSKCGSIENAMMVFENIKEKSVDHWNA 427

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
           +I G   +G    A +    M+   V+P+ +TF+G L+ACGHAGLV +G   FE M R +
Sbjct: 428 IIGGLAIHGLGELAFDFLMEMERMRVEPDDITFIGLLNACGHAGLVKEGMMCFELMRRVH 487

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIA 440
            ++PK++HY CMVD+LGRAG +E+A  FV EMP +PN  +W +LLS+C+ H+   +    
Sbjct: 488 KVEPKLQHYGCMVDILGRAGHIEEAKNFVEEMPFEPNDVIWRSLLSACKTHESFNVGQPV 547

Query: 441 ANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
           A  + +L++   P +YV  SN  A  GKW+ V ++R  MK + + K  GCSW+  E
Sbjct: 548 AENLMRLDS-PSPSSYVLASNMYAGLGKWNDVRKVRAMMKQKNLKKIPGCSWIELE 602



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 100/216 (46%), Gaps = 24/216 (11%)

Query: 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
           +   ++ +++H  L K  F  D+ L + L+  Y KCG +  A +VFD M +++  ++ SM
Sbjct: 140 VGLVKEGMQIHGLLKKLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKRDSVSYNSM 199

Query: 322 IDGYGKNGNPNQALELF-CMMQECCVQPNYVTFLGALSACGHAGLVDK---GREIFESM- 376
           IDGY K G  + A  +F C+  E   + N +++   +   G+A   D      ++F  M 
Sbjct: 200 IDGYVKGGRIDLARVVFDCIPLE---ERNLISWNSLIR--GYAQSEDGILVAWQLFAKMP 254

Query: 377 ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV--WAALLSSCRLHDDV 434
           ERD      +  +  M+D   + G +E A      M   PN D+  WA ++     +  V
Sbjct: 255 ERD------LISWNSMIDGCVKCGRMEDAQGLFDRM---PNRDIVSWANMIDGYAKNGRV 305

Query: 435 EMANIAANEIFKLNA---NDRPGAYVALSNTLAAAG 467
           ++A    +E+ + +    N   G YV     + A G
Sbjct: 306 DIARSLFDEMPERDVVAYNAMMGGYVQNGYCMEALG 341



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 24/100 (24%), Positives = 43/100 (43%), Gaps = 1/100 (1%)

Query: 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES 375
           F W ++I  Y    +P +A+ L  +M E     +  T    L AC   GLV +G +I   
Sbjct: 93  FLWNAIIKTYSHGHDPKEAMWLVSLMLENGAFADKFTLSLVLKACSRVGLVKEGMQI-HG 151

Query: 376 MERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
           + +       +    C++    + G L +A +    MP++
Sbjct: 152 LLKKLEFGSDLFLQNCLISFYVKCGCLVRASQVFDRMPKR 191


>gi|125595802|gb|EAZ35582.1| hypothetical protein OsJ_19868 [Oryza sativa Japonica Group]
          Length = 734

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 154/429 (35%), Positives = 237/429 (55%), Gaps = 13/429 (3%)

Query: 68  HAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV 127
           HA   ++G++   N++  +L  + KCG ++ A  +FD +P +   ++N MI GY +NG  
Sbjct: 184 HAFAIRSGLEELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDS 243

Query: 128 EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV 187
            E+L+L  ++V  G      T   +L A   C     L    G  VH  +++  + ++  
Sbjct: 244 REALALFNRMVEEGV---DVTDVSVLAALQACGELGCLDE--GMRVHELLVRIGLDSNVS 298

Query: 188 LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK----T 243
           +  AL+  Y K  +   A  VFD +  +  +   +MI G    G  EDA  +F +     
Sbjct: 299 VMNALITMYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLEN 358

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
           V+ D     ++I   +  I    +A  +H   I+    +DV + +AL+DMYAKCG+++ A
Sbjct: 359 VKPDSFTLVSVIPALA-DISDPLQARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIA 417

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
           R +F+  ++++V TW +MI GYG +G    A+ELF  M+   + PN  TFL  LSAC HA
Sbjct: 418 RILFNSARERHVITWNAMIHGYGSHGFGKAAVELFEEMKSIGIVPNETTFLSVLSACSHA 477

Query: 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA 423
           GLVD+GRE F SM+ DY ++P MEHY  MVDLLGRAG L++A  F+ +MP  P   V+ A
Sbjct: 478 GLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEAWAFIQKMPMDPGLSVYGA 537

Query: 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGAY-VALSNTLAAAGKWDSVTELREKMKLR 482
           +L +C+LH +VE+A  +A +IF+L   +  G Y V L+N  A A  W  V  +R  M+  
Sbjct: 538 MLGACKLHKNVELAEESAQKIFELGPQE--GVYHVLLANIYANASMWKDVARVRTAMEKN 595

Query: 483 GVLKDTGCS 491
           G+ K  G S
Sbjct: 596 GLQKTPGWS 604



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/307 (28%), Positives = 148/307 (48%), Gaps = 23/307 (7%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +HA +   G+      +  L  ++ KC     A ++FD +P R   A+N ++AGY +
Sbjct: 78  GRAVHAQLAARGIDSEALAATALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYAR 137

Query: 124 NGQVEESLSL-VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           NG    ++ + VR     GERPD  T   +L A    R+            HA  ++  +
Sbjct: 138 NGLARMAMEMVVRMQEEEGERPDSITLVSVLPACANARALAACRE-----AHAFAIRSGL 192

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           +    + TA++D+Y K G    AR+VFD M  KN +   +MI G+   G   +A  +F +
Sbjct: 193 EELVNVATAILDAYCKCGDIRAARVVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNR 252

Query: 243 TVEKDIVVYNAMIEGYSISIETARKA----------LEVHCQLIKNVFFEDVKLGSALVD 292
            VE+ + V +       +S+  A +A          + VH  L++     +V + +AL+ 
Sbjct: 253 MVEEGVDVTD-------VSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALIT 305

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           MY+KC ++D A  VFD + ++   +W +MI G  +NG    A+ LF  MQ   V+P+  T
Sbjct: 306 MYSKCKRVDLASHVFDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFT 365

Query: 353 FLGALSA 359
            +  + A
Sbjct: 366 LVSVIPA 372



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/254 (31%), Positives = 127/254 (50%), Gaps = 11/254 (4%)

Query: 130 SLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLY 189
           +L+    + S+G  P   TF+ +LK    C +   L    GR VHAQ+    + ++ +  
Sbjct: 43  ALAAFVAMSSAGAPPVLRTFTSLLK---LCAARGDLA--TGRAVHAQLAARGIDSEALAA 97

Query: 190 TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK--- 246
           TAL + Y K  + + AR VFD M  ++ +   ++++G+   G    A E+  +  E+   
Sbjct: 98  TALANMYAKCRRPADARRVFDRMPVRDRVAWNALVAGYARNGLARMAMEMVVRMQEEEGE 157

Query: 247 --DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDAR 304
             D +   +++     +        E H   I++   E V + +A++D Y KCG I  AR
Sbjct: 158 RPDSITLVSVLP-ACANARALAACREAHAFAIRSGLEELVNVATAILDAYCKCGDIRAAR 216

Query: 305 RVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG 364
            VFD M  KN  +W +MIDGY +NG+  +AL LF  M E  V    V+ L AL ACG  G
Sbjct: 217 VVFDWMPTKNSVSWNAMIDGYAQNGDSREALALFNRMVEEGVDVTDVSVLAALQACGELG 276

Query: 365 LVDKGREIFESMER 378
            +D+G  + E + R
Sbjct: 277 CLDEGMRVHELLVR 290



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/323 (24%), Positives = 148/323 (45%), Gaps = 45/323 (13%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           +T  S+ +ALQ          G+++H  + + G+  N ++   L+ ++ KC  +  A  +
Sbjct: 260 VTDVSVLAALQACGELGCLDEGMRVHELLVRIGLDSNVSVMNALITMYSKCKRVDLASHV 319

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           FDEL +RT  ++N MI G  +NG  E+++ L  ++     +PD +T   ++ A     ++
Sbjct: 320 FDELDRRTQVSWNAMILGCAQNGCSEDAVRLFTRMQLENVKPDSFTLVSVIPA----LAD 375

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
           +  P    R +H   ++  +  D  + TAL+D Y K G+ + ARI+F+   E++VI   +
Sbjct: 376 ISDPLQ-ARWIHGYSIRLHLDQDVYVLTALIDMYAKCGRVNIARILFNSARERHVITWNA 434

Query: 223 MISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
           MI G+ S GF + A E+F +     IV      E   +S+ +A       C         
Sbjct: 435 MIHGYGSHGFGKAAVELFEEMKSIGIVPN----ETTFLSVLSA-------C--------- 474

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQK-----NVFTWTSMIDGYGKNGNPNQALEL 337
                       +  G +D+ R  F  M++       +  + +M+D  G+ G  ++A   
Sbjct: 475 ------------SHAGLVDEGREYFTSMKEDYGLEPGMEHYGTMVDLLGRAGKLDEA--- 519

Query: 338 FCMMQECCVQPNYVTFLGALSAC 360
           +  +Q+  + P    +   L AC
Sbjct: 520 WAFIQKMPMDPGLSVYGAMLGAC 542


>gi|297738897|emb|CBI28142.3| unnamed protein product [Vitis vinifera]
          Length = 571

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 158/473 (33%), Positives = 257/473 (54%), Gaps = 47/473 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLLI--LHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           +I   I +TG   + +   K ++       G L YA ++F+ +    L  YN +I  + K
Sbjct: 50  QIQTQILRTGFHQSGDTLNKFMVCCTDPSIGNLHYAERIFNYIDIPGLFIYNLVIKAFTK 109

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC------------------------- 158
           NG   +++ L R+L   G  PD +T+  + KA  C                         
Sbjct: 110 NGSFRKAVLLFRQLREEGLSPDNFTYPFVFKAIGCLGEVREGEKVYGFVVKSGLEFDTYV 169

Query: 159 CRSNVPLPRNLGRMVH-AQILKCDVKADDVLYTALVDSYVKGGKTSYA----RIVFDMML 213
           C S + +   +GR+ +  Q+ +   + D V +  L+  YVK  +   A    R +F+ M 
Sbjct: 170 CNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVKCRRYEDAVDVFRQIFNDMP 229

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHC 273
            K VIC TSM+SG+++ G +++A E+F ++  +D+V++ AMI GY +       A+ +  
Sbjct: 230 IKTVICWTSMVSGYVNCGQLDEARELFERSPVRDVVLWTAMINGY-VQFNRFDDAVALFR 288

Query: 274 QL-IKNV---------FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMID 323
           ++ IK V            D  +G+AL++MYAKCG I+ +  +F+ +++K+  +WTS+I 
Sbjct: 289 EMQIKRVSPDRFTLVALLTDAVVGTALIEMYAKCGFIEKSLEIFNGLKEKDTASWTSIIC 348

Query: 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK 383
           G   NG  ++ALELF  M +  V+P+ +TF+G LSAC H GLV++GR+ F SM   Y ++
Sbjct: 349 GLAMNGKTSKALELFAEMVQTGVKPDDITFIGVLSACSHGGLVEEGRKHFRSMTAVYQIE 408

Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV---WAALLSSCRLHDDVEMANIA 440
           PK+EHY C++DLLGRAG L++A + + + P   N  +   + ALLS+CR H +VEM    
Sbjct: 409 PKLEHYGCLIDLLGRAGQLDEAEELIEKSPNVNNEVIVPLYGALLSACRTHGNVEMGERV 468

Query: 441 ANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           A  +  + + D    +  L+N  A+A +W+ VT++R KMK  GV K  GCS V
Sbjct: 469 AKRLVGIESGD-SSVHTLLANIYASADRWEDVTKVRRKMKDLGVKKVPGCSSV 520



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/335 (24%), Positives = 161/335 (48%), Gaps = 43/335 (12%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G K++  + K+G++ +T +   L+ ++ + G ++   Q+F+E+PQR + ++N +I+GY+K
Sbjct: 151 GEKVYGFVVKSGLEFDTYVCNSLMDMYAEVGRVQNLRQVFEEMPQRDVVSWNVLISGYVK 210

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA-QILKCDV 182
             + E+++ + R++ +           M +K   C  S V    N G++  A ++ +   
Sbjct: 211 CRRYEDAVDVFRQIFN----------DMPIKTVICWTSMVSGYVNCGQLDEARELFERSP 260

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV--------------ICSTSMISGFM 228
             D VL+TA+++ YV+  +   A  +F  M  K V              +  T++I  + 
Sbjct: 261 VRDVVLWTAMINGYVQFNRFDDAVALFREMQIKRVSPDRFTLVALLTDAVVGTALIEMYA 320

Query: 229 SQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGS 288
             GF+E + EIF    EKD   + ++I G +++ +T+ KALE+  ++++     D     
Sbjct: 321 KCGFIEKSLEIFNGLKEKDTASWTSIICGLAMNGKTS-KALELFAEMVQTGVKPDDITFI 379

Query: 289 ALVDMYAKCGKIDDARRVFDHMQ-----QKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
            ++   +  G +++ R+ F  M      +  +  +  +ID  G+ G  ++A EL      
Sbjct: 380 GVLSACSHGGLVEEGRKHFRSMTAVYQIEPKLEHYGCLIDLLGRAGQLDEAEELIEK--- 436

Query: 344 CCVQPNY-----VTFLGA-LSACGHAGLVDKGREI 372
               PN      V   GA LSAC   G V+ G  +
Sbjct: 437 ---SPNVNNEVIVPLYGALLSACRTHGNVEMGERV 468


>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
 gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
 gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
 gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 804

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 146/440 (33%), Positives = 250/440 (56%), Gaps = 17/440 (3%)

Query: 60  TPFYGLKIHAHITKTGVKP-NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMI 118
           +P  G +IH H  ++ ++  +  +   +L ++ K G + YA ++F+ + QR + A+N MI
Sbjct: 246 SPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMI 305

Query: 119 AGYLKNGQVEESLSLVRKLV-SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQI 177
             Y +NG+V ++    +K+   +G +PD  T   +L AS             GR +H   
Sbjct: 306 GCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAILE---------GRTIHGYA 356

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
           ++       VL TAL+D Y + G+   A ++FD M EKNVI   S+I+ ++  G    A 
Sbjct: 357 MRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSAL 416

Query: 238 EIFRKTVEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDM 293
           E+F++  +  +V       +++  Y+ S+  + +  E+H  ++K+ ++ +  + ++LV M
Sbjct: 417 ELFQELWDSSLVPDSTTIASILPAYAESLSLS-EGREIHAYIVKSRYWSNTIILNSLVHM 475

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           YA CG ++DAR+ F+H+  K+V +W S+I  Y  +G    ++ LF  M    V PN  TF
Sbjct: 476 YAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTF 535

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
              L+AC  +G+VD+G E FESM+R+Y + P +EHY CM+DL+GR G+   A +F+ EMP
Sbjct: 536 ASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMP 595

Query: 414 EKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473
             P + +W +LL++ R H D+ +A  AA +IFK+  +D  G YV L N  A AG+W+ V 
Sbjct: 596 FVPTARIWGSLLNASRNHKDITIAEFAAEQIFKME-HDNTGCYVLLLNMYAEAGRWEDVN 654

Query: 474 ELREKMKLRGVLKDTGCSWV 493
            ++  M+ +G+ + +  S V
Sbjct: 655 RIKLLMESKGISRTSSRSTV 674



 Score =  164 bits (415), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 122/425 (28%), Positives = 213/425 (50%), Gaps = 22/425 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G KIHA + K G   +  +   L+ L++K G    A ++F+E+P+R + ++N MI+GYL 
Sbjct: 149 GKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLA 208

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G    SL L ++++  G +PD   FS +     C  S+V  P+ +G+ +H   ++  ++
Sbjct: 209 LGDGFSSLMLFKEMLKCGFKPD--RFSTMSALGAC--SHVYSPK-MGKEIHCHAVRSRIE 263

Query: 184 ADDVLY-TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             DV+  T+++D Y K G+ SYA  +F+ M+++N++    MI  +   G V DA   F+K
Sbjct: 264 TGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQK 323

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALE---VHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
             E++ +  + +    SI++  A   LE   +H   ++  F   + L +AL+DMY +CG+
Sbjct: 324 MSEQNGLQPDVIT---SINLLPASAILEGRTIHGYAMRRGFLPHMVLETALIDMYGECGQ 380

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +  A  +FD M +KNV +W S+I  Y +NG    ALELF  + +  + P+  T    L A
Sbjct: 381 LKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPA 440

Query: 360 CGHAGLVDKGREIFESM--ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
              +  + +GREI   +   R +S    +     +V +    G LE A K    +  K  
Sbjct: 441 YAESLSLSEGREIHAYIVKSRYWSNTIILNS---LVHMYAMCGDLEDARKCFNHILLK-- 495

Query: 418 SDV--WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
            DV  W +++ +  +H    ++    +E+     N     + +L    + +G  D   E 
Sbjct: 496 -DVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEY 554

Query: 476 REKMK 480
            E MK
Sbjct: 555 FESMK 559



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/335 (26%), Positives = 165/335 (49%), Gaps = 18/335 (5%)

Query: 99  AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
           A Q+FDE+ +     +N MI G+   G   E++    ++V +G + D +T+  ++K+   
Sbjct: 83  ALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAG 142

Query: 159 CRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI 218
             S        G+ +HA ++K    +D  +  +L+  Y+K G    A  VF+ M E++++
Sbjct: 143 ISS-----LEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIV 197

Query: 219 CSTSMISGFMSQGFVEDAEEIFRKTVE---KDIVVYNAMIEGYSISIETARKALEVHCQL 275
              SMISG+++ G    +  +F++ ++   K          G    + + +   E+HC  
Sbjct: 198 SWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHA 257

Query: 276 IKN-VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQA 334
           +++ +   DV + ++++DMY+K G++  A R+F+ M Q+N+  W  MI  Y +NG    A
Sbjct: 258 VRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDA 317

Query: 335 LELFCMMQE-CCVQPNYVTFLGALSACGHAGLVDKGREIFE-SMERDYSMKPKMEHYACM 392
              F  M E   +QP+ +T +  L A      + +GR I   +M R +   P M     +
Sbjct: 318 FLCFQKMSEQNGLQPDVITSINLLPASA----ILEGRTIHGYAMRRGF--LPHMVLETAL 371

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
           +D+ G  G L+ A      M EK N   W +++++
Sbjct: 372 IDMYGECGQLKSAEVIFDRMAEK-NVISWNSIIAA 405



 Score = 50.1 bits (118), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 61/113 (53%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           +T++ S L  Y  S +   G +IHA+I K+    NT I   L+ ++  CG L+ A + F+
Sbjct: 431 STTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFN 490

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
            +  + + ++N +I  Y  +G    S+ L  ++++S   P+  TF+ +L A +
Sbjct: 491 HILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACS 543


>gi|326527617|dbj|BAK08083.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 642

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 153/419 (36%), Positives = 240/419 (57%), Gaps = 17/419 (4%)

Query: 82  ISIKLLIL-HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSS 140
           I I  LI  + K G +  A ++FD + +RT +++N MIA Y   G+  E+L+L  +++S 
Sbjct: 186 IPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALTLFDRMLSE 245

Query: 141 GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGG 200
           G RP+  T + +   S C +S      + G+ V   I + D++ + +++TAL++ YVK  
Sbjct: 246 GARPNAITITSVF--SICAKSG---DLDTGKRVRDLIGEDDLQ-NVIVHTALMEMYVKCR 299

Query: 201 KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI 260
               AR  FD M +++V+  ++MI+G+   G   ++ E+F +    D       + G  +
Sbjct: 300 AIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVG--V 357

Query: 261 SIETARKALEVHCQLIKNVFFEDVKL------GSALVDMYAKCGKIDDARRVFDHMQQKN 314
               A+   +   + I N + E+ +L      GSAL+DMY +CG +  AR VF  M+QK 
Sbjct: 358 ISACAQLGSDELVEQIGN-YAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKG 416

Query: 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374
           V TW SMI G   NG    A+ L+  M E  VQPN +TF+  L+AC HAGLVD+G   FE
Sbjct: 417 VITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFE 476

Query: 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDV 434
            M+R++ + P++EH AC+VDLL ++G L +A KF+ +M  +PN+ +W  LLSSCR H DV
Sbjct: 477 EMKREHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADV 536

Query: 435 EMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           E+A +A+ ++  +   D    YV LSN  A AG W    E+R+ M+ + V K +  SW+
Sbjct: 537 ELAKLASRKLLAMEP-DNSSIYVLLSNIYADAGLWGDAREIRDLMRSKNVQKLSAYSWI 594



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/331 (29%), Positives = 144/331 (43%), Gaps = 78/331 (23%)

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           GR VH   L   +  D  + TALVD Y K G    A  VFD M  K+ I    +I+G+  
Sbjct: 138 GRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSVFDEMPVKDPIPINCLITGYSK 197

Query: 230 QGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQL-----------IKN 278
            G V+ A  +F     +    +N+MI  Y+   E  R+AL +  ++           I +
Sbjct: 198 AGDVDKARRLFDGMERRTSASWNSMIACYAHGGEF-REALTLFDRMLSEGARPNAITITS 256

Query: 279 VF-----------------------FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
           VF                        ++V + +AL++MY KC  IDDARR FD M Q++V
Sbjct: 257 VFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHTALMEMYVKCRAIDDARREFDRMSQRDV 316

Query: 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG----------- 364
             W++MI GY +NG P ++LELF  M+    +PN VT +G +SAC   G           
Sbjct: 317 VAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIGNY 376

Query: 365 ---------------LVD---------KGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
                          L+D         + R +F  ME+   +      +  M+  L   G
Sbjct: 377 AENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVIT-----WNSMIRGLAMNG 431

Query: 401 SLEQALKFVLEMPE---KPNSDVWAALLSSC 428
             E A+    +M E   +PN   + ALL++C
Sbjct: 432 FAEDAISLYEKMAENGVQPNEITFVALLAAC 462



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 145/330 (43%), Gaps = 52/330 (15%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           N +T TS+ S      + DT   G ++   I +  ++ N  +   L+ +++KC A+  A 
Sbjct: 250 NAITITSVFSICAKSGDLDT---GKRVRDLIGEDDLQ-NVIVHTALMEMYVKCRAIDDAR 305

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           + FD + QR + A++ MIAGY +NG+  ESL L  ++ ++  RP+  T   ++ A     
Sbjct: 306 REFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLG 365

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           S+  L   +G     Q L         L +AL+D Y + G    AR VF  M +K VI  
Sbjct: 366 SD-ELVEQIGNYAENQRLPL----TSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITW 420

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLI 276
            SMI G    GF EDA  ++ K  E  +    + + A++            A   H  L+
Sbjct: 421 NSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALL------------AACTHAGLV 468

Query: 277 KN--VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQA 334
                FFE++K                      +H+    V     ++D   K+G   +A
Sbjct: 469 DQGMAFFEEMKR---------------------EHLVSPQVEHCACIVDLLCKSGGLWEA 507

Query: 335 LELFCMMQECCVQPNYVTFLGALSAC-GHA 363
            +  C M+   V+PN V +   LS+C  HA
Sbjct: 508 YKFICDME---VEPNAVIWTTLLSSCRAHA 534


>gi|297795827|ref|XP_002865798.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311633|gb|EFH42057.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 701

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 142/434 (32%), Positives = 243/434 (55%), Gaps = 15/434 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +++  I   G +P   +  ++L++H+KCG +  A ++FDE+P+R L +YN +I+G++  G
Sbjct: 144 RVYGFIISNGFEPEKYMMNRILLMHVKCGMIIDARRLFDEMPERNLFSYNSIISGFVNFG 203

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             EE+  L + +       + +TF+++L+AS    S       +G+ +H   LK  V  +
Sbjct: 204 NYEEAFELFKLMWEELSDCETHTFAVMLRASAGLWSVY-----VGKQLHVCALKLGVVDN 258

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEIFR 241
             +   L+D Y K G    AR  F+ M EK  +   ++++G+   G+ E+A     E+  
Sbjct: 259 TFVSCGLIDMYSKCGDIEDARCAFESMPEKTTVAWNNIVAGYALHGYSEEALCLLYEMRD 318

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKAL--EVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
             V  D    + MI    IS   A+  L  + H  LI++ F  ++   +ALVD Y+K G+
Sbjct: 319 SGVSMDQFTLSIMIR---ISTRLAKLELTKQAHASLIRSGFESEIVANTALVDFYSKWGR 375

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +D AR VFD + +KN+ +W +++ GY  +G    A+ LF  M    V PN+VTFL  LSA
Sbjct: 376 VDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVRLFERMIAAKVAPNHVTFLAVLSA 435

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C ++GL ++G EIF SM   + +KP+  HYACM++LLGR G L++A+ F+   P K   +
Sbjct: 436 CAYSGLSEQGWEIFLSMSEVHGIKPRAMHYACMIELLGRDGLLDEAIAFIRRAPLKTTVN 495

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +WAALL++CR+  ++E+  + A +++ +   ++ G YV L N   + GK      + E +
Sbjct: 496 MWAALLNACRMQGNLELGRVVAEKLYGMGP-EKLGNYVVLYNMYNSMGKTAEAAGVLETL 554

Query: 480 KLRGVLKDTGCSWV 493
           + +G+     C+WV
Sbjct: 555 ESKGLSMIPACTWV 568



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 161/351 (45%), Gaps = 51/351 (14%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           + G ++H    K GV  NT +S  L+ ++ KCG ++ A   F+ +P++T  A+N ++AGY
Sbjct: 241 YVGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFESMPEKTTVAWNNIVAGY 300

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR-NLGRMVHAQILKC 180
             +G  EE+L L+ ++  SG   D +T S++++ ST       L +  L +  HA +++ 
Sbjct: 301 ALHGYSEEALCLLYEMRDSGVSMDQFTLSIMIRIST------RLAKLELTKQAHASLIRS 354

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
             +++ V  TALVD Y K G+   AR VFD +  KN+I   +++ G+ + G   DA  +F
Sbjct: 355 GFESEIVANTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVRLF 414

Query: 241 RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
            + +                    A K    H   +            A++   A  G  
Sbjct: 415 ERMI--------------------AAKVAPNHVTFL------------AVLSACAYSGLS 442

Query: 301 DDARRVFDHMQQKN-----VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           +    +F  M + +        +  MI+  G++G  ++A+     ++   ++     +  
Sbjct: 443 EQGWEIFLSMSEVHGIKPRAMHYACMIELLGRDGLLDEAI---AFIRRAPLKTTVNMWAA 499

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQA 405
            L+AC   G ++ GR + E +   Y M P K+ +Y  + ++    G   +A
Sbjct: 500 LLNACRMQGNLELGRVVAEKL---YGMGPEKLGNYVVLYNMYNSMGKTAEA 547



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/288 (23%), Positives = 133/288 (46%), Gaps = 17/288 (5%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           + V+  I+    + +  +   ++  +VK G    AR +FD M E+N+    S+ISGF++ 
Sbjct: 143 KRVYGFIISNGFEPEKYMMNRILLMHVKCGMIIDARRLFDEMPERNLFSYNSIISGFVNF 202

Query: 231 GFVEDAEEIFRKTVEK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
           G  E+A E+F+   E+    +   +  M+   S  + +     ++H   +K    ++  +
Sbjct: 203 GNYEEAFELFKLMWEELSDCETHTFAVMLRA-SAGLWSVYVGKQLHVCALKLGVVDNTFV 261

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
              L+DMY+KCG I+DAR  F+ M +K    W +++ GY  +G   +AL L   M++  V
Sbjct: 262 SCGLIDMYSKCGDIEDARCAFESMPEKTTVAWNNIVAGYALHGYSEEALCLLYEMRDSGV 321

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
             +  T    +        ++  ++   S+ R    + ++     +VD   + G ++ A 
Sbjct: 322 SMDQFTLSIMIRISTRLAKLELTKQAHASLIRS-GFESEIVANTALVDFYSKWGRVDTA- 379

Query: 407 KFVLEMPEKPNSDVWAALLS----------SCRLHDDVEMANIAANEI 444
           ++V +   + N   W AL+           + RL + +  A +A N +
Sbjct: 380 RYVFDKLPRKNIISWNALMGGYANHGRGTDAVRLFERMIAAKVAPNHV 427



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 110/234 (47%), Gaps = 10/234 (4%)

Query: 210 DMMLEKNVICSTSMISGFMSQGFVEDAEEIF-----RKTVEKDIVVYNAMIEGYSISIET 264
           D  + K+ +   S I   +      +A E+F     R + +  +  Y+A++E   I +++
Sbjct: 80  DTQIRKSGVRICSQIEKLVLCNRFREAFELFEILEIRCSFKVGVSTYDALVEA-CIRLKS 138

Query: 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
            R    V+  +I N F  +  + + ++ M+ KCG I DARR+FD M ++N+F++ S+I G
Sbjct: 139 IRCVKRVYGFIISNGFEPEKYMMNRILLMHVKCGMIIDARRLFDEMPERNLFSYNSIISG 198

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP 384
           +   GN  +A ELF +M E        TF   L A      V  G+++     +   +  
Sbjct: 199 FVNFGNYEEAFELFKLMWEELSDCETHTFAVMLRASAGLWSVYVGKQLHVCALKLGVVDN 258

Query: 385 KMEHYAC-MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
                +C ++D+  + G +E A      MPEK  +  W  +++   LH   E A
Sbjct: 259 TF--VSCGLIDMYSKCGDIEDARCAFESMPEK-TTVAWNNIVAGYALHGYSEEA 309


>gi|326495056|dbj|BAJ85624.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 150/440 (34%), Positives = 238/440 (54%), Gaps = 13/440 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H  + K G+  N  I+  +L +++KCG ++ A ++FDEL    L  +  MI GY +
Sbjct: 242 GRWVHGSVIKHGMVFNPFITAAVLDMYVKCGEVEDARRLFDELGFVDLVLWTTMIVGYTQ 301

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG   ++L L          P+  T + +L AS   R+      +LGR++HA  +K  V 
Sbjct: 302 NGSPLDALLLFSDKKFVHIVPNSVTIATVLSASAQLRN-----LSLGRLIHAMSVKLLVI 356

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK- 242
            +DV+  ALVD Y K    S A  +F  +  K+V+   S+I+G++      +A  +F + 
Sbjct: 357 ENDVVMNALVDMYAKCKALSEANGIFGRISNKDVVTWNSLIAGYVENDMGNEALMLFSQM 416

Query: 243 ----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
               +    I + NA+     +      K    H   +K  F  +V + +AL+++Y KC 
Sbjct: 417 RVQGSSPDAISIVNALSACVCLGDLLIGKCF--HTYAVKRAFLSNVYVNTALLNLYNKCA 474

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            +  A+RVF  M ++N  TW +MI GYG  G+   +++L   M +  +QPN V F   LS
Sbjct: 475 DLPSAQRVFSEMSERNSVTWGAMIGGYGMQGDSAGSIDLLNKMLKDNIQPNEVVFTSILS 534

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
            C H G+V  G+  F+SM + +++ P M+HYACMVD+L RAG+LE+AL+F+ +MP   + 
Sbjct: 535 TCSHTGMVSVGKMCFDSMAQYFNITPSMKHYACMVDVLARAGNLEEALEFIQKMPMPADI 594

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            +W A L  C+LH  +E    A N +  L+  D+P  YV +SN   + G+WD    +R  
Sbjct: 595 SIWGAFLHGCKLHSRLEFGEEAINRMMVLHP-DKPDFYVLMSNLYTSYGRWDKSLAIRRL 653

Query: 479 MKLRGVLKDTGCSWVGTESG 498
           M+ RG++K  GCS VG E+G
Sbjct: 654 MQERGLVKLPGCSSVGLENG 673



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 115/423 (27%), Positives = 200/423 (47%), Gaps = 11/423 (2%)

Query: 48  LPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP 107
           L  AL+  + S    YG ++H +  K G      ++  L+ ++ K G L+ A ++FD + 
Sbjct: 126 LSLALKASVRSADFRYGRRLHCNAVKAGGADGFVMNC-LVDMYAKAGDLENARKVFDRIL 184

Query: 108 QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR 167
            R + ++  M++G L+NG  EE L+L  ++      P  YT + +L A T   S      
Sbjct: 185 GRNVVSWTSMLSGCLQNGFAEEGLALFNEMREERVLPSEYTMASVLMACTMLGS-----L 239

Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
           + GR VH  ++K  +  +  +  A++D YVK G+   AR +FD +   +++  T+MI G+
Sbjct: 240 HQGRWVHGSVIKHGMVFNPFITAAVLDMYVKCGEVEDARRLFDELGFVDLVLWTTMIVGY 299

Query: 228 MSQGFVEDAEEIFRKTVEKDIV---VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDV 284
              G   DA  +F       IV   V  A +   S  +        +H   +K +  E+ 
Sbjct: 300 TQNGSPLDALLLFSDKKFVHIVPNSVTIATVLSASAQLRNLSLGRLIHAMSVKLLVIEND 359

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
            + +ALVDMYAKC  + +A  +F  +  K+V TW S+I GY +N   N+AL LF  M+  
Sbjct: 360 VVMNALVDMYAKCKALSEANGIFGRISNKDVVTWNSLIAGYVENDMGNEALMLFSQMRVQ 419

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQ 404
              P+ ++ + ALSAC   G +  G+  F +     +    +     +++L  +   L  
Sbjct: 420 GSSPDAISIVNALSACVCLGDLLIGK-CFHTYAVKRAFLSNVYVNTALLNLYNKCADLPS 478

Query: 405 ALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464
           A +   EM E+ NS  W A++    +  D   +    N++ K N       + ++ +T +
Sbjct: 479 AQRVFSEMSER-NSVTWGAMIGGYGMQGDSAGSIDLLNKMLKDNIQPNEVVFTSILSTCS 537

Query: 465 AAG 467
             G
Sbjct: 538 HTG 540



 Score =  131 bits (330), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 100/335 (29%), Positives = 158/335 (47%), Gaps = 17/335 (5%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +HA +   G+        KLL  +   G L  A ++ DE P+     Y   +  +   G+
Sbjct: 42  LHARLLAHGLLRALRARTKLLSCYAALGDLASARRVLDETPRPDPYTYRVALGWHAAAGR 101

Query: 127 VEESLSLVRKLVSS--GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
             ++L+L R +         D    S+ LKAS   RS        GR +H   +K    A
Sbjct: 102 HADALALHRGMRRRCPEAHDDVVLLSLALKASV--RSA---DFRYGRRLHCNAVKAG-GA 155

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
           D  +   LVD Y K G    AR VFD +L +NV+  TSM+SG +  GF E+   +F +  
Sbjct: 156 DGFVMNCLVDMYAKAGDLENARKVFDRILGRNVVSWTSMLSGCLQNGFAEEGLALFNEMR 215

Query: 245 EKDIVVYNAMIEGYSIS---IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
           E+ ++     +    ++   + +  +   VH  +IK+    +  + +A++DMY KCG+++
Sbjct: 216 EERVLPSEYTMASVLMACTMLGSLHQGRWVHGSVIKHGMVFNPFITAAVLDMYVKCGEVE 275

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           DARR+FD +   ++  WT+MI GY +NG+P  AL LF   +   + PN VT    LSA  
Sbjct: 276 DARRLFDELGFVDLVLWTTMIVGYTQNGSPLDALLLFSDKKFVHIVPNSVTIATVLSASA 335

Query: 362 HAGLVDKGREIFE------SMERDYSMKPKMEHYA 390
               +  GR I         +E D  M   ++ YA
Sbjct: 336 QLRNLSLGRLIHAMSVKLLVIENDVVMNALVDMYA 370



 Score = 82.0 bits (201), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/248 (27%), Positives = 112/248 (45%), Gaps = 9/248 (3%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           R +HA++L   +       T L+  Y   G  + AR V D     +       +    + 
Sbjct: 40  RALHARLLAHGLLRALRARTKLLSCYAALGDLASARRVLDETPRPDPYTYRVALGWHAAA 99

Query: 231 GFVEDAEEIFRKTVEK-----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
           G   DA  + R    +     D VV  ++    S+     R    +HC  +K     D  
Sbjct: 100 GRHADALALHRGMRRRCPEAHDDVVLLSLALKASVRSADFRYGRRLHCNAVK-AGGADGF 158

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           + + LVDMYAK G +++AR+VFD +  +NV +WTSM+ G  +NG   + L LF  M+E  
Sbjct: 159 VMNCLVDMYAKAGDLENARKVFDRILGRNVVSWTSMLSGCLQNGFAEEGLALFNEMREER 218

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFES-MERDYSMKPKMEHYACMVDLLGRAGSLEQ 404
           V P+  T    L AC   G + +GR +  S ++      P +   A ++D+  + G +E 
Sbjct: 219 VLPSEYTMASVLMACTMLGSLHQGRWVHGSVIKHGMVFNPFIT--AAVLDMYVKCGEVED 276

Query: 405 ALKFVLEM 412
           A +   E+
Sbjct: 277 ARRLFDEL 284



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 54/119 (45%), Gaps = 2/119 (1%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           A S+ +AL   +       G   H +  K     N  ++  LL L+ KC  L  A ++F 
Sbjct: 425 AISIVNALSACVCLGDLLIGKCFHTYAVKRAFLSNVYVNTALLNLYNKCADLPSAQRVFS 484

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           E+ +R    +  MI GY   G    S+ L+ K++    +P+   F+ IL  STC  + +
Sbjct: 485 EMSERNSVTWGAMIGGYGMQGDSAGSIDLLNKMLKDNIQPNEVVFTSIL--STCSHTGM 541


>gi|413945386|gb|AFW78035.1| hypothetical protein ZEAMMB73_343828 [Zea mays]
          Length = 608

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 152/470 (32%), Positives = 244/470 (51%), Gaps = 44/470 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++HA + K G+    +    L+  + +   L  A + FD+ P+R L  Y+ ++A    + 
Sbjct: 22  RVHARLLKEGLADLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAVSHSS 81

Query: 126 QVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
             E  L L+R+++S    RPD +  + +  A+   RS       LGR +HA        A
Sbjct: 82  DPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRS-----LRLGRQLHAHFAASPYSA 136

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
           D+V+ ++L+D Y K G    AR VFD +  KN +  T++ISG+ S G   +A ++F+   
Sbjct: 137 DNVVKSSLIDMYCKCGVPQDARKVFDSIGVKNSVVWTALISGYASNGCTGEALDLFQSMP 196

Query: 245 EKDIVVYNAMIEGY----------SISIETARKALEVHCQLIKNV--------------- 279
              +  + A+I G+           + +E  R  + +H   +                  
Sbjct: 197 AHGLFTWTALISGFVKAGNYTGAMGLFVEMRRDDIRIHDAFVLATVIGGAADLAALVLGR 256

Query: 280 ----------FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
                     F   + +G+ALVDMY+KC  I  AR VF+ +  ++V +WT+++ G  ++G
Sbjct: 257 QLHGFVMRLGFLSSMIVGNALVDMYSKCSDIHSAREVFEGITVRDVISWTTILVGEAQHG 316

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
              +   L+  M    ++PN VTF+G + AC HAGLV KGR++F+SM+R+Y MKP ++HY
Sbjct: 317 RAEEVFALYNRMLLAGMKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKREYGMKPGVQHY 376

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
            C +DLL R+G L +A K +  MP +P+   W ALLS+C+ H+D +M    A+ + +L  
Sbjct: 377 TCYLDLLSRSGYLSEAEKLITTMPYEPDEATWGALLSACKKHNDTQMCLRVADNLLELRP 436

Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV--GTES 497
            D P  Y+ LSN  A   KWDSV ++R+ M    + K  G SWV  G ES
Sbjct: 437 KD-PSTYILLSNVYAVNCKWDSVAKVRKIMAEMEIRKVPGYSWVEAGRES 485



 Score = 48.5 bits (114), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 39/163 (23%), Positives = 75/163 (46%), Gaps = 5/163 (3%)

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
           R    VH +L+K    +     + LV  YA+   + DARR FD   ++++  +++++   
Sbjct: 18  RAVRRVHARLLKEGLADLPSAPALLVSAYARSCLLPDARRAFDDAPRRDLHLYSALLAAV 77

Query: 326 GKNGNPNQALELF-CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD-YSMK 383
             + +P   L L   M+ +  ++P++       SA G    +  GR++        YS  
Sbjct: 78  SHSSDPELVLPLLRRMLSDDALRPDHFVLASLASAAGRLRSLRLGRQLHAHFAASPYSAD 137

Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
             ++  + ++D+  + G  + A K V +     NS VW AL+S
Sbjct: 138 NVVK--SSLIDMYCKCGVPQDARK-VFDSIGVKNSVVWTALIS 177


>gi|225434183|ref|XP_002275535.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Vitis vinifera]
          Length = 513

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 163/501 (32%), Positives = 266/501 (53%), Gaps = 56/501 (11%)

Query: 32  KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKT---GVKPNTNISIKLLI 88
           KLQ+++ L      T L +  +H+         L+I A +       + PN  I++KL+ 
Sbjct: 2   KLQSHNHLK---LTTLLLNYAEHFQTKQL----LQIQAQLITNPPLSLHPNL-IAVKLIG 53

Query: 89  LHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVS--SGERPDG 146
                  L +A  +F +LP   + ++N +I  ++  G  E +L+   + +S  S   P+ 
Sbjct: 54  ACAANANLYHAQLIFAQLPNPNVFSWNAIIKAHINCGAWEHALNCFNRQLSLPSAPNPNE 113

Query: 147 YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR 206
           Y ++ ++KA     +        G  VHA ++K  +  +  L T+LVD Y K  + + A 
Sbjct: 114 YIYTSLIKACAGLEAIAD-----GLKVHAVVIKSGLDNNIHLGTSLVDMYFKFREPASAG 168

Query: 207 IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETAR 266
            VFD M  ++V+   +M+SG+   G +E A  +F + +E+D++ +NAMI GY +      
Sbjct: 169 QVFDEMPLRDVVSWNTMVSGYCLCGDLESARRVFDQMLERDVISWNAMIGGY-VQNGKYS 227

Query: 267 KALEV--HCQLIKNVFFEDVKL----------------------------------GSAL 290
            A+EV    Q +  V  +DV L                                  G+AL
Sbjct: 228 DAIEVFHEMQKVGGVVPDDVTLVSVLSACAHVGALDFGRWIDRFVGWRGRGLNLYLGNAL 287

Query: 291 VDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY 350
           +DMYAKCG +++ARR+FD M++++V +W++MI G G +G+ ++A   +  M EC V+PN 
Sbjct: 288 IDMYAKCGTMEEARRIFDGMRERDVISWSTMICGSGTHGDADEAFGYYSKMLECGVKPNE 347

Query: 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410
           VTF+G LSAC HAGLVDKG E+F  M ++Y + PK+ HY C++DLL RAG L++A   + 
Sbjct: 348 VTFMGLLSACSHAGLVDKGIELFSRMIQEYRIVPKVGHYGCVIDLLSRAGRLDEAEDLIN 407

Query: 411 EMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
            MP +PN  VW ALL  CR+H D       A  + +L++ +  G+YV ++   A+ G+ D
Sbjct: 408 SMPIEPNVIVWGALLGGCRIHKDFRRGERVAQHLLELDS-EYTGSYVYIAGAKASVGRVD 466

Query: 471 SVTELREKMKLRGVLKDTGCS 491
                  +M+ +G++KD GCS
Sbjct: 467 DAANCWLRMQHKGIIKDPGCS 487


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 141/433 (32%), Positives = 239/433 (55%), Gaps = 13/433 (3%)

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           L +H +  K G+     +   ++ ++ K G L+   ++FD +  R L  +N +I+G+ + 
Sbjct: 190 LAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQG 249

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
           GQV  ++ +   +  SG  PD  T   +  A   C          GR VH  +++     
Sbjct: 250 GQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICG-----GRSVHCYMVRRGWDV 304

Query: 185 DDVLY-TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D++   A+VD Y K  K   A+ +FD M  ++ +   ++I+G+M  G   +A  ++   
Sbjct: 305 GDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHM 364

Query: 244 VEKDIV-----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
            + + +      + +++  YS  +   ++   +H   IK     DV +G+ ++D+YAKCG
Sbjct: 365 QKHEGLKPIQGTFVSVLPAYS-HLGALQQGTRMHALSIKTGLNLDVYVGTCVIDLYAKCG 423

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           K+D+A  +F+   +++   W ++I G G +G+  +AL LF  MQ+  + P++VTF+  L+
Sbjct: 424 KLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLLA 483

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC HAGLVD+GR  F  M+  Y +KP  +HYACMVD+ GRAG L+ A  F+  MP KP+S
Sbjct: 484 ACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPDS 543

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            +W ALL +CR+H +VEM  +A+  +F+L+  +  G YV +SN  A  GKWD V E+R  
Sbjct: 544 AIWGALLGACRIHGNVEMGKVASQNLFELDPKN-VGYYVLMSNMYAKVGKWDGVDEVRSL 602

Query: 479 MKLRGVLKDTGCS 491
           ++ + + K  G S
Sbjct: 603 VRRQNLQKTPGWS 615



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 98/378 (25%), Positives = 186/378 (49%), Gaps = 15/378 (3%)

Query: 61  PFYGLKIHAHITKTGV-KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIA 119
           P    ++HA   + G+ + +   S  L+  +L+ G ++ A + FDE+  R + A+N M++
Sbjct: 84  PGTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLS 143

Query: 120 GYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           G  +N +  E++ L  ++V  G   D  T S +L             R L   +H   +K
Sbjct: 144 GLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCVLLGD-----RALALAMHLYAVK 198

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
             +  +  +  A++D Y K G     R VFD M  ++++   S+ISG    G V  A E+
Sbjct: 199 HGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEM 258

Query: 240 F----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVF-FEDVKLGSALVDMY 294
           F       V  D++   ++    +   +       VHC +++  +   D+  G+A+VDMY
Sbjct: 259 FCGMRDSGVSPDVLTLLSLASAIAQCGDIC-GGRSVHCYMVRRGWDVGDIIAGNAIVDMY 317

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC-CVQPNYVTF 353
           AK  KI+ A+R+FD M  ++  +W ++I GY +NG  ++A+ ++  MQ+   ++P   TF
Sbjct: 318 AKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTF 377

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           +  L A  H G + +G  +  ++     +   +    C++DL  + G L++A+    + P
Sbjct: 378 VSVLPAYSHLGALQQGTRM-HALSIKTGLNLDVYVGTCVIDLYAKCGKLDEAMLLFEQTP 436

Query: 414 EKPNSDVWAALLSSCRLH 431
            + ++  W A++S   +H
Sbjct: 437 RR-STGPWNAVISGVGVH 453



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 136/287 (47%), Gaps = 13/287 (4%)

Query: 145 DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV-KADDVLYTALVDSYVKGGKTS 203
           D +TF  +L+A+    +   L        HA  L+  + + D     ALV +Y++ G+  
Sbjct: 70  DAFTFPPLLRAAQGPGTAAQL--------HACALRLGLLRGDAFASGALVHAYLRFGRVR 121

Query: 204 YARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIV---VYNAMIEGYSI 260
            A   FD M  ++V    +M+SG        +A  +F + V + +    V  + +    +
Sbjct: 122 DAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCV 181

Query: 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
            +     AL +H   +K+   +++ + +A++D+Y K G +++ R+VFD M  +++ TW S
Sbjct: 182 LLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNS 241

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
           +I G+ + G    A+E+FC M++  V P+ +T L   SA    G +  GR +   M R  
Sbjct: 242 IISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRG 301

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
                +     +VD+  +   +E A +    MP + ++  W  L++ 
Sbjct: 302 WDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVR-DAVSWNTLITG 347



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 75/322 (23%), Positives = 128/322 (39%), Gaps = 86/322 (26%)

Query: 17  NRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGV 76
            +H  L P   TF   L  Y  L           ALQ          G ++HA   KTG+
Sbjct: 365 QKHEGLKPIQGTFVSVLPAYSHLG----------ALQQ---------GTRMHALSIKTGL 405

Query: 77  KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRK 136
             +  +   ++ L+ KCG L  A  +F++ P+R+   +N +I+G   +G   ++LSL  +
Sbjct: 406 NLDVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQ 465

Query: 137 LVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196
           +   G  PD  TF  +L A +                               +  LVD  
Sbjct: 466 MQQEGISPDHVTFVSLLAACS-------------------------------HAGLVDQ- 493

Query: 197 VKGGKTSYARIVFDMM--------LEKNVICSTSMISGFMSQGFVEDAEEIFRKT-VEKD 247
                    R  F+MM        + K+  C   M+  F   G ++DA +  R   ++ D
Sbjct: 494 --------GRNFFNMMQTAYGIKPIAKHYAC---MVDMFGRAGQLDDAFDFIRNMPIKPD 542

Query: 248 IVVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFEDVK-LGSALV--DMYAKCGK--- 299
             ++ A++    I  ++E  + A +       N+F  D K +G  ++  +MYAK GK   
Sbjct: 543 SAIWGALLGACRIHGNVEMGKVASQ-------NLFELDPKNVGYYVLMSNMYAKVGKWDG 595

Query: 300 IDDARRVFDHMQQKNVFTWTSM 321
           +D+ R +      +    W+S+
Sbjct: 596 VDEVRSLVRRQNLQKTPGWSSI 617


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 142/435 (32%), Positives = 236/435 (54%), Gaps = 12/435 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH    K  +  + +    L+ ++ KCG    A   F+ +  R +  +N +I GY +
Sbjct: 449 GKSIHCFTVKADMDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQ 508

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G    ++ +  KL  S   PD  T   ++ A  C   N     + G  +H  I+K   +
Sbjct: 509 IGDPYNAIDMFYKLRLSAINPDAGTMVGVVPA--CALLN---DLDQGTCIHGLIVKLGFE 563

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMM-LEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           +D  +  AL+D Y K G    A  +F+     K+ +    +I+ +M  G  ++A   F +
Sbjct: 564 SDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQ 623

Query: 243 ----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
                   + V + +++   +  +   R+ +  H  +I+  F  +  +G++L+DMYAKCG
Sbjct: 624 MRLENFHPNSVTFVSVLPAAAY-LAAFREGMAFHACIIQMGFLSNTLVGNSLIDMYAKCG 682

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           ++  + ++F+ M  K+  +W +M+ GY  +G+ ++A+ LF +MQE  VQ + V+F+  LS
Sbjct: 683 QLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVLS 742

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC H GLV++GR+IF SM   Y +KP +EHYACMVDLLGRAG  ++ L F+  MP +P++
Sbjct: 743 ACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPDA 802

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            VW ALL SCR+H +V++  +A + + KL   + P  +V LS+  A +G+W    + R K
Sbjct: 803 GVWGALLGSCRMHSNVKLGEVALDHLVKLEPRN-PAHFVVLSSIYAQSGRWADAGKARSK 861

Query: 479 MKLRGVLKDTGCSWV 493
           M   G+ K  GCSWV
Sbjct: 862 MNDLGLKKTPGCSWV 876



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 86/312 (27%), Positives = 160/312 (51%), Gaps = 10/312 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+  H  I + G++ +  I   L+ ++ K G LK A ++FD++P+R + A+N MIAG  +
Sbjct: 148 GVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQ 207

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +    E++   R +   G  P   +  + L    C  SN+ L R+    +H  + + D  
Sbjct: 208 SEDPCEAVDFFRSMQLVGVEPSSVSL-LNLFPGICKLSNIELCRS----IHGYVFRRDFS 262

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +   +   L+D Y K G    AR VFD M++++ +   +M++G+   G   +  E+F K 
Sbjct: 263 S--AVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKM 320

Query: 244 VEKDIVVYN-AMIEGYSISIETA--RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
              ++ +   + +  +  + ET    K  E+H   ++     D+ + + L+ MYAKCG+ 
Sbjct: 321 KLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGET 380

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           + A+++F  +Q +++  W+++I    + G P +AL LF  MQ   ++PN VT +  L AC
Sbjct: 381 EKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPAC 440

Query: 361 GHAGLVDKGREI 372
               L+  G+ I
Sbjct: 441 ADLSLLKLGKSI 452



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 114/363 (31%), Positives = 172/363 (47%), Gaps = 28/363 (7%)

Query: 18  RHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVK 77
           R +T +    +  P L +  + +N L    L S+ +H      P   L+IHA I  +G K
Sbjct: 9   RSFTSIATXASEFPSLSS-STYTNYLHYPRLLSSCKHL----NPL--LQIHAQIIVSGFK 61

Query: 78  PNTNIS--IKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVR 135
            + +I+  I L  L  KC     A  +FD  P  +   +N MI  Y ++ Q  E+L +  
Sbjct: 62  HHHSITHLINLYSLFHKC---DLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYY 118

Query: 136 KLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDS 195
            +V  G  PD YTF+ +LKA T       L    G   H +I +  ++ D  +   LVD 
Sbjct: 119 CMVEKGLEPDKYTFTFVLKACTG-----ALNLQEGVWFHGEIDRRGLERDVFIGAGLVDM 173

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVY 251
           Y K G    AR VFD M +++V+   +MI+G        +A + FR      VE   V  
Sbjct: 174 YSKMGDLKRAREVFDKMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSL 233

Query: 252 NAMIEGYS--ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309
             +  G     +IE  R    +H  + +  F   V  G  L+D+Y+KCG +D ARRVFD 
Sbjct: 234 LNLFPGICKLSNIELCR---SIHGYVFRRDFSSAVSNG--LIDLYSKCGDVDVARRVFDQ 288

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKG 369
           M  ++  +W +M+ GY  NG   + LELF  M+   V+ N V+ + A  A      ++KG
Sbjct: 289 MVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKG 348

Query: 370 REI 372
           +EI
Sbjct: 349 KEI 351



 Score =  128 bits (321), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 97/373 (26%), Positives = 182/373 (48%), Gaps = 13/373 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH    +  +  +  ++  L++++ KCG  + A Q+F  L  R L A++ +IA  ++
Sbjct: 348 GKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQ 407

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G  EE+LSL +++ +   +P+  T   IL A     +++ L + LG+ +H   +K D+ 
Sbjct: 408 TGYPEEALSLFQEMQNQKMKPNRVTLMSILPAC----ADLSLLK-LGKSIHCFTVKADMD 462

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK- 242
           +D    TALV  Y K G  + A   F+ M  ++++   S+I+G+   G   +A ++F K 
Sbjct: 463 SDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKL 522

Query: 243 ---TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               +  D      ++   ++ +    +   +H  ++K  F  D  + +AL+DMYAKCG 
Sbjct: 523 RLSAINPDAGTMVGVVPACAL-LNDLDQGTCIHGLIVKLGFESDCHVKNALIDMYAKCGS 581

Query: 300 IDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           +  A  +F+     K+  TW  +I  Y +NG+  +A+  F  M+     PN VTF+  L 
Sbjct: 582 LPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLP 641

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           A  +     +G      + +   +   +   + ++D+  + G L  + K   EM  K ++
Sbjct: 642 AAAYLAAFREGMAFHACIIQMGFLSNTLVGNS-LIDMYAKCGQLXYSEKLFNEMDHK-DT 699

Query: 419 DVWAALLSSCRLH 431
             W A+LS   +H
Sbjct: 700 VSWNAMLSGYAVH 712



 Score = 65.5 bits (158), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 84/170 (49%), Gaps = 13/170 (7%)

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
           L++H Q+I + F     + + L+++Y+   K D AR VFD     +   W SMI  Y ++
Sbjct: 49  LQIHAQIIVSGFKHHHSI-THLINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRS 107

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHA-----GLVDKGREIFESMERDYSMK 383
              N+ALE++  M E  ++P+  TF   L AC  A     G+   G      +ERD  + 
Sbjct: 108 KQYNEALEMYYCMVEKGLEPDKYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIG 167

Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDD 433
                 A +VD+  + G L++A +   +MP++ +   W A+++     +D
Sbjct: 168 ------AGLVDMYSKMGDLKRAREVFDKMPKR-DVVAWNAMIAGLSQSED 210


>gi|413954823|gb|AFW87472.1| hypothetical protein ZEAMMB73_326917 [Zea mays]
          Length = 610

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 137/434 (31%), Positives = 254/434 (58%), Gaps = 10/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA +   G +P   ++ +L+I++ +CGAL+ A  + D +P+R + ++  MI+GY +
Sbjct: 54  GRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMPERNVVSWTAMISGYSQ 113

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N +  E+  L   ++ +G  P+ +T + +L   T C  +  + ++  + VHA  +K + +
Sbjct: 114 NERPAEAWDLFIMMLRAGCEPNEFTLASVL---TSCTGSQGIHQHQIKQVHAFAIKKNFE 170

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               + ++L+D Y +      AR VFDM+  ++V+  T+++SG+   G  E+A  +FR+ 
Sbjct: 171 LHMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSYTTILSGYTRLGLDEEALNLFRQL 230

Query: 244 VEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
             + +    V ++ ++   S  + +     +VH  +++      + L ++L+DMY+KCGK
Sbjct: 231 YNEGMQCNQVTFSVLLNALS-GLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYSKCGK 289

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +  +RRVFD+M +++V +W +M+ GYG++G   + ++LF  M +  V+P+ VT L  L  
Sbjct: 290 LLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLFRFMCDK-VKPDSVTLLAVLLG 348

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
             H GLVD+G ++F+ + ++ S     +HY C++DLLGR+G LE+AL  + +MP +P   
Sbjct: 349 YSHGGLVDEGLDMFDHIVKEQSTLLNTQHYGCVIDLLGRSGQLEKALLLIQKMPFQPTRA 408

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +W +LL +CR+H +V +    A ++F +   +  G YV LSN  AAA  W  V  LR+ M
Sbjct: 409 IWGSLLGACRVHANVHVGEFVAQKLFDIEPEN-AGNYVILSNIYAAARMWKDVFRLRKLM 467

Query: 480 KLRGVLKDTGCSWV 493
             + V+K+ G SW+
Sbjct: 468 LKKTVIKEPGRSWM 481



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 88/175 (50%), Gaps = 1/175 (0%)

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
           R+  +VH +++   +   + L + LV MYA+CG ++DA  V D M ++NV +WT+MI GY
Sbjct: 52  REGRQVHARMVTAGYRPALYLATRLVIMYARCGALEDAHNVLDGMPERNVVSWTAMISGY 111

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC-GHAGLVDKGREIFESMERDYSMKP 384
            +N  P +A +LF MM     +PN  T    L++C G  G+     +   +     + + 
Sbjct: 112 SQNERPAEAWDLFIMMLRAGCEPNEFTLASVLTSCTGSQGIHQHQIKQVHAFAIKKNFEL 171

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANI 439
            M   + ++D+  R+ ++++A +    +P +        L    RL  D E  N+
Sbjct: 172 HMFVGSSLLDMYARSENIQEARRVFDMLPARDVVSYTTILSGYTRLGLDEEALNL 226



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 63/122 (51%), Gaps = 4/122 (3%)

Query: 32  KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHL 91
           +L N     N +T + L +AL    + D   YG ++H  I +  +     +   L+ ++ 
Sbjct: 229 QLYNEGMQCNQVTFSVLLNALSGLSSMD---YGKQVHGLILRRELPFFMALQNSLIDMYS 285

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           KCG L Y+ ++FD +P+R++ ++N M+ GY ++G   E + L R  +    +PD  T   
Sbjct: 286 KCGKLLYSRRVFDNMPERSVVSWNAMLMGYGRHGMAYEVVQLFR-FMCDKVKPDSVTLLA 344

Query: 152 IL 153
           +L
Sbjct: 345 VL 346


>gi|359481040|ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 138/397 (34%), Positives = 239/397 (60%), Gaps = 11/397 (2%)

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           ++F+ +P+R + ++N +I+G  +NG  E++L +VR++ ++  RPD +T S +L       
Sbjct: 191 KVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFA--- 247

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
             V L +  G+ +H   ++    AD  + ++L+D Y K  +   +  VF M+ + + I  
Sbjct: 248 EYVNLLK--GKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISW 305

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLI 276
            S+I+G +  G  ++  + F++ +   I    V +++++   +  + T     ++H  +I
Sbjct: 306 NSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACA-HLTTLHLGKQLHGYII 364

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           ++ F  +V + SALVDMYAKCG I  AR +FD M+  ++ +WT+MI GY  +G+   A+ 
Sbjct: 365 RSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAIS 424

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           LF  M+   V+PNYV F+  L+AC HAGLVD+  + F SM +DY + P +EHYA + DLL
Sbjct: 425 LFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLL 484

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456
           GR G LE+A +F+ +M  +P   VW+ LL++CR+H ++E+A   + ++F ++  +  GAY
Sbjct: 485 GRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQN-IGAY 543

Query: 457 VALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           V LSN  +AAG+W    +LR  M+ +G+ K   CSW+
Sbjct: 544 VLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWI 580



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/400 (25%), Positives = 189/400 (47%), Gaps = 43/400 (10%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQR-TLSAYNYMIAGYLKN 124
           ++HA I +T + P+ ++   +L ++     L  +  +F+ LP   T  A+  +I  Y  +
Sbjct: 26  QLHAQILRTSL-PSPSLLSTILSIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIRCYTSH 84

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
           G    SLS   ++++SG+ PD   F  +LK+ T  +         G  VH  I++  +  
Sbjct: 85  GLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTLMKD-----LRFGESVHGCIIRLGMGF 139

Query: 185 DDVLYTALV-------------------------DSYVKGGKTSY----ARIVFDMMLEK 215
           D     AL+                         D Y K  K SY     R VF+MM ++
Sbjct: 140 DLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPKR 199

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEV 271
           +++   ++ISG    G  EDA  + R+    D+       ++++  ++  +    K  E+
Sbjct: 200 DIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLL-KGKEI 258

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
           H   I+N +  DV +GS+L+DMYAKC ++DD+ RVF  + Q +  +W S+I G  +NG  
Sbjct: 259 HGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMF 318

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC 391
           ++ L+ F  M    ++PN+V+F   + AC H   +  G+++   + R       +   + 
Sbjct: 319 DEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLGKQLHGYIIRS-RFDGNVFIASA 377

Query: 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           +VD+  + G++  A +++ +  E  +   W A++    LH
Sbjct: 378 LVDMYAKCGNIRTA-RWIFDKMELYDMVSWTAMIMGYALH 416



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/395 (22%), Positives = 171/395 (43%), Gaps = 62/395 (15%)

Query: 32  KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHL 91
           ++ N D   +  T +S+      Y+N      G +IH +  + G   +  I   L+ ++ 
Sbjct: 226 EMGNADLRPDSFTLSSVLPIFAEYVN---LLKGKEIHGYAIRNGYDADVFIGSSLIDMYA 282

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           KC  +  + ++F  LPQ    ++N +IAG ++NG  +E L   ++++ +  +P+  +FS 
Sbjct: 283 KCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSS 342

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           I+ A   C     L  +LG+ +H  I++     +  + +ALVD Y K G    AR +FD 
Sbjct: 343 IMPA---CAHLTTL--HLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDK 397

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARK 267
           M   +++  T+MI G+   G   DA  +F++     V+ + V + A++   S        
Sbjct: 398 MELYDMVSWTAMIMGYALHGHAYDAISLFKRMEVEGVKPNYVAFMAVLTACS-------- 449

Query: 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-----NVFTWTSMI 322
                                         G +D+A + F+ M Q       +  + ++ 
Sbjct: 450 ----------------------------HAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVA 481

Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD-YS 381
           D  G+ G   +A E    M    ++P    +   L+AC     V K  E+ E + +  ++
Sbjct: 482 DLLGRVGRLEEAYEFISDMH---IEPTGSVWSTLLAACR----VHKNIELAEKVSKKLFT 534

Query: 382 MKPK-MEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
           + P+ +  Y  + ++   AG  + A K  + M +K
Sbjct: 535 VDPQNIGAYVLLSNIYSAAGRWKDARKLRIAMRDK 569



 Score = 39.3 bits (90), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 54/296 (18%), Positives = 123/296 (41%), Gaps = 38/296 (12%)

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK-NVICSTSMIS 225
           ++  + +HAQIL+  + +  +L T L   Y        + ++F+ +      +   S+I 
Sbjct: 21  KSQAKQLHAQILRTSLPSPSLLSTIL-SIYSNLNLLHDSLLIFNSLPSPPTTLAWKSIIR 79

Query: 226 GFMSQGFVEDAEEIFRKTVEK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFF 281
            + S G    +   F + +      D  V+ ++++  ++ ++  R    VH  +I+    
Sbjct: 80  CYTSHGLFLHSLSFFIQMLASGKYPDHNVFPSVLKSCTL-MKDLRFGESVHGCIIRLGMG 138

Query: 282 EDVKLGSALVDMYAKC---------------GKIDDA--------------RRVFDHMQQ 312
            D+   +AL++MY+K                GK  D               R+VF+ M +
Sbjct: 139 FDLYTCNALMNMYSKFWSLEEVNTYKKVFDEGKTSDVYSKKEKESYYLGSLRKVFEMMPK 198

Query: 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           +++ +W ++I G  +NG    AL +   M    ++P+  T    L        + KG+EI
Sbjct: 199 RDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFAEYVNLLKGKEI 258

Query: 373 FESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
                R+      +   + ++D+  +   ++ + +    +P+  +   W ++++ C
Sbjct: 259 HGYAIRN-GYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQH-DGISWNSIIAGC 312


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 155/457 (33%), Positives = 249/457 (54%), Gaps = 13/457 (2%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           A+ LPS L+    S +  +  ++H++I +  V  +  +   L+ ++ K G ++ A ++F 
Sbjct: 318 ASFLPSILE----SGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEMARKIFQ 373

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP 164
           +     ++    MI+GY+ +G   ++++  R L+  G   +  T + +L A     +  P
Sbjct: 374 QNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAAVAALKP 433

Query: 165 LPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
                G+ +H  ILK  ++    + +A+ D Y K G+   A   F  M +++ +C  SMI
Sbjct: 434 -----GKELHCHILKKRLENIVNVGSAITDMYAKCGRLDLAYEFFRRMSDRDSVCWNSMI 488

Query: 225 SGFMSQGFVEDAEEIFRK---TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFF 281
           S F   G  E A ++FR+   +  K   V  +     + ++       E+H  +I+N F 
Sbjct: 489 SSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSSALSAAANLPALYYGKEMHGYVIRNAFS 548

Query: 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM 341
            D  + S L+DMY+KCG +  A  VF+ M  KN  +W S+I  YG +G P + L+L+  M
Sbjct: 549 SDTFVASTLIDMYSKCGNLALAWCVFNLMDGKNEVSWNSIIAAYGNHGCPRECLDLYHEM 608

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGS 401
               + P++VTFL  +SACGHAGLVD+G   F  M R+Y +  +MEHYACMVDL GRAG 
Sbjct: 609 LRAGIHPDHVTFLVIISACGHAGLVDEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGR 668

Query: 402 LEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSN 461
           + +A   +  MP  P++ VW  LL +CRLH +VE+A +A+  + +L+  +  G YV LSN
Sbjct: 669 VHEAFDTIKSMPFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNS-GYYVLLSN 727

Query: 462 TLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498
             A AG+W SV ++R  MK +GV K  G SW+    G
Sbjct: 728 VHADAGEWASVLKVRSLMKEKGVQKIPGYSWIDVNGG 764



 Score =  160 bits (404), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 152/285 (53%), Gaps = 16/285 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H  +  +G + +  ++  L+ ++ KCG L YA ++F+ +PQ     +N +IAGY++
Sbjct: 232 GTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQ 291

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKA---STCCRSNVPLPRNLGRMVHAQILKC 180
           NG  +E+  L   ++S+G +PD  TF+  L +   S   R          + VH+ I++ 
Sbjct: 292 NGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHC--------KEVHSYIVRH 343

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
            V  D  L +AL+D Y KGG    AR +F   +  +V   T+MISG++  G   DA   F
Sbjct: 344 RVPFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTF 403

Query: 241 RKTVEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVFFEDVKLGSALVDMYAK 296
           R  +++ +V  N++     +    A  AL    E+HC ++K      V +GSA+ DMYAK
Sbjct: 404 RWLIQEGMVT-NSLTMASVLPACAAVAALKPGKELHCHILKKRLENIVNVGSAITDMYAK 462

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM 341
           CG++D A   F  M  ++   W SMI  + +NG P  A++LF  M
Sbjct: 463 CGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQM 507



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 180/385 (46%), Gaps = 16/385 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++H  +   G+      S ++L L++ CG  + AG +F EL  R    +N+MI G    G
Sbjct: 32  QVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFFELELRYALPWNWMIRGLYMLG 91

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             + +L    K++ S   PD YTF  ++KA     +NVPL      +VH          D
Sbjct: 92  WFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGL-NNVPLC----MVVHDTARSLGFHVD 146

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
               +AL+  Y   G    AR VFD +  ++ I    M+ G++  G  ++A   F + + 
Sbjct: 147 LFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCE-MR 205

Query: 246 KDIVVYNAMIEGYSISIETAR----KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
               + N++     +SI   R       ++H  +I + F  D ++ + LV MY+KCG + 
Sbjct: 206 TSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLL 265

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            AR++F+ M Q +  TW  +I GY +NG  ++A  LF  M    V+P+ VTF   L +  
Sbjct: 266 YARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSIL 325

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
            +G +   +E+   + R + +   +   + ++D+  + G +E A K + +     +  V 
Sbjct: 326 ESGSLRHCKEVHSYIVR-HRVPFDVYLKSALIDVYFKGGDVEMARK-IFQQNILVDVAVC 383

Query: 422 AALLSSCRLHDDVEMANIAANEIFK 446
            A++S   LH      NI A   F+
Sbjct: 384 TAMISGYVLHG----LNIDAINTFR 404


>gi|242062548|ref|XP_002452563.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
 gi|241932394|gb|EES05539.1| hypothetical protein SORBIDRAFT_04g028180 [Sorghum bicolor]
          Length = 745

 Score =  262 bits (669), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 138/407 (33%), Positives = 229/407 (56%), Gaps = 11/407 (2%)

Query: 91  LKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFS 150
           L+C  ++ A ++F+ +  R    +  M+ G+ +NG   E+L + R++   G   D YTF 
Sbjct: 217 LRCKMVEEARRLFEVMTDRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFG 276

Query: 151 MILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFD 210
            IL   T C +   L +  G+ +HA I++     +  + +ALVD Y K      A  VF 
Sbjct: 277 SIL---TACGALSALEQ--GKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFR 331

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETAR 266
            M  KN+I  T++I G+   G  E+A  +F    R  ++ D     ++I   + ++ +  
Sbjct: 332 RMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVISSCA-NLASLE 390

Query: 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
           +  + HC  + +     + + +ALV +Y KCG I+DA R+FD M   +  +WT+++ GY 
Sbjct: 391 EGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYA 450

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM 386
           + G   + ++LF  M    V+P+ VTF+G LSAC  AG V+KGR  F SM++D+ + P  
Sbjct: 451 QFGRAKETIDLFEKMLAKGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPID 510

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446
           +HY CM+DL  R+G L++A +F+ +MP  P++  W  LLS+CRL  D+E+   AA  + +
Sbjct: 511 DHYTCMIDLYSRSGKLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGKWAAENLLE 570

Query: 447 LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           ++  + P +YV L +  AA G+W+ V +LR  M+ R V K+ GCSW+
Sbjct: 571 IDPQN-PASYVLLCSMHAAKGQWNEVAQLRRGMRDRQVKKEPGCSWI 616



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 136/532 (25%), Positives = 222/532 (41%), Gaps = 121/532 (22%)

Query: 39  LSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKT-GVKPNTNISIKLLILHLKCGALK 97
           +S PL+  S  +AL        P     +H  I +T    P T +   LL  + K G   
Sbjct: 1   MSRPLS--SQYAALLSAAARTEPHVAGALHCVILRTLPHPPPTYLLNHLLTAYGKAGRHA 58

Query: 98  YAGQMFDELP-------------------------------QRTLSAYNYMIAGYLKNGQ 126
            A ++FD +P                               QR + +YN +IAG+   G 
Sbjct: 59  RARRVFDAMPHPNLFTYNALLSTLAHARLLSDMEALFASMTQRDIVSYNAVIAGFSGGGS 118

Query: 127 VEESLSLVRKLVS--SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
             +++ +   L+   S  RP   T S ++ A++         R LG+  H QIL+    A
Sbjct: 119 HAQAVRVYLALLQADSSVRPSRITMSTMVMAASALGD-----RALGKQFHCQILRLGFGA 173

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
           +  + + LVD Y K      A+  FD +  KNV+   +MI+G +    VE+A  +F    
Sbjct: 174 NAFVGSPLVDMYAKMSLVGDAKRAFDEVDSKNVVMYNTMITGLLRCKMVEEARRLFEVMT 233

Query: 245 EKDIVVYNAMIEGYSI---------------------------SIETARKAL-------E 270
           ++D + +  M+ G++                            SI TA  AL       +
Sbjct: 234 DRDSITWTTMVTGFTQNGLESEALEIFRRMRFQGIAIDQYTFGSILTACGALSALEQGKQ 293

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           +H  +I+  + ++V +GSALVDMY+KC  I  A  VF  M  KN+ +WT++I GYG+NG 
Sbjct: 294 IHAYIIRTRYDDNVFVGSALVDMYSKCRSIKLAETVFRRMTCKNIISWTALIVGYGQNGC 353

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
             +A+ +F  MQ   + P+  T    +S+C +   +++G + F  +    ++   + HY 
Sbjct: 354 SEEAVRVFSEMQRDGIDPDDYTLGSVISSCANLASLEEGAQ-FHCL----ALVSGLMHYI 408

Query: 391 ----CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446
                +V L G+ GS+E A +   EM                  HD V            
Sbjct: 409 TVSNALVTLYGKCGSIEDAHRLFDEMS----------------FHDQV------------ 440

Query: 447 LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498
                   ++ AL +  A  G+     +L EKM  +GV  D G +++G  S 
Sbjct: 441 --------SWTALVSGYAQFGRAKETIDLFEKMLAKGVKPD-GVTFIGVLSA 483



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 75/344 (21%), Positives = 146/344 (42%), Gaps = 54/344 (15%)

Query: 38  SLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALK 97
           +  + LTA    SAL+          G +IHA+I +T    N  +   L+ ++ KC ++K
Sbjct: 274 TFGSILTACGALSALEQ---------GKQIHAYIIRTRYDDNVFVGSALVDMYSKCRSIK 324

Query: 98  YAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
            A  +F  +  + + ++  +I GY +NG  EE++ +  ++   G  PD YT   ++  S+
Sbjct: 325 LAETVFRRMTCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDYTLGSVI--SS 382

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
           C         NL  +       C          ALV                   L   +
Sbjct: 383 CA--------NLASLEEGAQFHC---------LALVSG-----------------LMHYI 408

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIK 277
             S ++++ +   G +EDA  +F +    D V + A++ GY+     A++ +++  +++ 
Sbjct: 409 TVSNALVTLYGKCGSIEDAHRLFDEMSFHDQVSWTALVSGYA-QFGRAKETIDLFEKMLA 467

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT-----WTSMIDGYGKNGNPN 332
                D      ++   ++ G ++  R  F  MQ+ +        +T MID Y ++G   
Sbjct: 468 KGVKPDGVTFIGVLSACSRAGFVEKGRSYFHSMQKDHGIVPIDDHYTCMIDLYSRSGKLK 527

Query: 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM 376
           +A E    M    + P+ + +   LSAC   G ++ G+   E++
Sbjct: 528 EAEEFIKQMP---MHPDAIGWGTLLSACRLRGDMEIGKWAAENL 568


>gi|359480846|ref|XP_002280702.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 785

 Score =  262 bits (669), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 147/442 (33%), Positives = 243/442 (54%), Gaps = 44/442 (9%)

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRK-LVSSGERPDGYT 148
           H++ G +  A   F+++ +R + ++N MI+GY ++G   E+L +  K L+ S  +PD +T
Sbjct: 221 HMQSGLVDLAQVQFEQMIERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFT 280

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA------------------------ 184
            +  L A     +       LG+ +HA I++ +                           
Sbjct: 281 LASALSACANLEN-----LKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKI 335

Query: 185 ---------DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
                    D + +TAL+D YVK G  + AR +FD +  ++V+  T+MI G++  GF +D
Sbjct: 336 IEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQD 395

Query: 236 AEEIFRKTVEKDIVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVD 292
           A E+FR  +++     N   A +   S S+ +     ++H    ++     V + +AL+ 
Sbjct: 396 AMELFRSMIKEGPKPNNYTLATMLSVSSSLASLDHGRQIHASATRSGNASSVSVSNALIT 455

Query: 293 MYAKCGKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
           MYAK G I+DAR VF+ +  K +  TWTSMI    ++G   +AL LF  M E  ++P+++
Sbjct: 456 MYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFERMLENGIKPDHI 515

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
           T++G LSAC H GLV++GR  +  M+  + + P   HYACM+DL GRAG L++A  F+  
Sbjct: 516 TYVGVLSACTHVGLVEQGRSYYNLMQNAHKIIPTPSHYACMIDLFGRAGLLQEAHAFIEN 575

Query: 412 MPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471
           MP +P+   W +LL+SC++H +VE+A +AA  +  +   +  GAY AL+N  +A G+W++
Sbjct: 576 MPIEPDVIAWGSLLASCKVHKNVELAEVAAERLLLIEP-ENSGAYSALANVYSACGQWEN 634

Query: 472 VTELREKMKLRGVLKDTGCSWV 493
              +R+ MK +GV KD G SWV
Sbjct: 635 AANIRKSMKDKGVKKDQGFSWV 656



 Score =  144 bits (364), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 120/495 (24%), Positives = 209/495 (42%), Gaps = 107/495 (21%)

Query: 38  SLSNPLTATSLP--SALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGA 95
           S S  LT+ S P  S LQ  +    PF G  IHA I K G+     +   L+  + K G 
Sbjct: 4   SSSQILTSPSDPYTSFLQRSLKFKDPFTGKSIHARIIKAGLHLGVFLMNNLMNFYAKTGF 63

Query: 96  LKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEES------------------------- 130
           +  A ++FDE+P +++ ++N +++GY K G++EE+                         
Sbjct: 64  IYDAHRVFDEMPVKSVFSWNIILSGYAKGGRLEEAHRVFEEMPEPDSVSWTAMIVGYNQM 123

Query: 131 ------LSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
                 + + R++VS    P  +T + +L +             +GR VH+ ++K  + +
Sbjct: 124 GQFENAIGMFREMVSDDVPPTQFTLTNVLASCAAVEC-----LGIGRKVHSFVVKHGLSS 178

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
              +  +L++ Y K G    A+IVFD M  K+     +MIS  M  G V+ A+  F + +
Sbjct: 179 YISVANSLLNMYAKSGDPVTAKIVFDRMKLKSTSSWNTMISSHMQSGLVDLAQVQFEQMI 238

Query: 245 EKDIVVYNAMIEGYS-----------------------------------ISIETARKAL 269
           E+D+V +NAMI GY+                                    ++E  +   
Sbjct: 239 ERDVVSWNAMISGYNQHGFDREALDIFSKMLMDSSSKPDKFTLASALSACANLENLKLGK 298

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKC-------------------------------- 297
           ++H  +I+  F     +G+AL+ MY+K                                 
Sbjct: 299 QIHAHIIRTEFDTFGAVGNALISMYSKSGGVEIAQKIIEQSMISNLDVIAFTALLDGYVK 358

Query: 298 -GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
            G I+ ARR+FD ++ ++V  WT+MI GY +NG    A+ELF  M +   +PN  T    
Sbjct: 359 LGDINPARRIFDSLRVRDVVAWTAMIVGYVQNGFNQDAMELFRSMIKEGPKPNNYTLATM 418

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           LS       +D GR+I  S  R  +    +     ++ +  ++GS+  A      +  K 
Sbjct: 419 LSVSSSLASLDHGRQIHASATRSGN-ASSVSVSNALITMYAKSGSINDARWVFNLIHWKR 477

Query: 417 NSDVWAALLSSCRLH 431
           ++  W +++ +   H
Sbjct: 478 DTITWTSMIIALAQH 492



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/329 (24%), Positives = 143/329 (43%), Gaps = 53/329 (16%)

Query: 37  DSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKT-----GVKPNTNISI------- 84
           DS S P   T L SAL    N +    G +IHAHI +T     G   N  IS+       
Sbjct: 271 DSSSKPDKFT-LASALSACANLENLKLGKQIHAHIIRTEFDTFGAVGNALISMYSKSGGV 329

Query: 85  ---------------------KLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
                                 LL  ++K G +  A ++FD L  R + A+  MI GY++
Sbjct: 330 EIAQKIIEQSMISNLDVIAFTALLDGYVKLGDINPARRIFDSLRVRDVVAWTAMIVGYVQ 389

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  ++++ L R ++  G +P+ YT      A+    S+     + GR +HA   +    
Sbjct: 390 NGFNQDAMELFRSMIKEGPKPNNYTL-----ATMLSVSSSLASLDHGRQIHASATRSGNA 444

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMM-LEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           +   +  AL+  Y K G  + AR VF+++  +++ I  TSMI      G  E+A  +F +
Sbjct: 445 SSVSVSNALITMYAKSGSINDARWVFNLIHWKRDTITWTSMIIALAQHGLGEEALTLFER 504

Query: 243 TVEKDI----VVYNAMIEG--YSISIETARKALEVHCQLIKNV--FFEDVKLGSALVDMY 294
            +E  I    + Y  ++    +   +E  R     +  L++N           + ++D++
Sbjct: 505 MLENGIKPDHITYVGVLSACTHVGLVEQGRS----YYNLMQNAHKIIPTPSHYACMIDLF 560

Query: 295 AKCGKIDDARRVFDHMQ-QKNVFTWTSMI 322
            + G + +A    ++M  + +V  W S++
Sbjct: 561 GRAGLLQEAHAFIENMPIEPDVIAWGSLL 589


>gi|449479601|ref|XP_004155648.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 663

 Score =  262 bits (669), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 146/433 (33%), Positives = 239/433 (55%), Gaps = 12/433 (2%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++HAHI  +G+  + ++  KL+ L    G++ YA ++F  +P      ++ ++    K G
Sbjct: 109 QVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFG 168

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              +++   R+++ SG     YTF+ ++KA   C     L   LG+ +H+ ++ C   +D
Sbjct: 169 FSIDTVLFYRRMLFSGAPQSNYTFTSVIKA---CADLSAL--RLGKEIHSHVMVCGYGSD 223

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             +  AL+  Y K      A+ VFD M ++ +I   S+ISG+   G  +++  +F   +E
Sbjct: 224 MYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMME 283

Query: 246 KDIVVYNAMIEGYSISIETARKALEVHCQLIK----NVFFEDVKLGSALVDMYAKCGKID 301
                 +A I    +S  +   AL+  C L      N F  +V LG++L++MY +CG + 
Sbjct: 284 SGFQPDSATIVSL-LSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVS 342

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            AR VFD M+++NV TWT+MI GYG +G   QA+ELF  M+    +PN +TF+  LSAC 
Sbjct: 343 KAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACA 402

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE-MPEKPNSDV 420
           H+GL+D GR +F SM+  Y + P +EH  CMVD+ GRAG L  A +F+ + +P++P   V
Sbjct: 403 HSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAV 462

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W ++L +CR+H + ++    A  +  +   + PG YV LSN  A AG+ D V  +R  M 
Sbjct: 463 WTSMLGACRMHRNFDLGVKVAEHVLSVEPEN-PGHYVMLSNIYALAGRMDRVEMVRNMMT 521

Query: 481 LRGVLKDTGCSWV 493
            R + K  G S +
Sbjct: 522 RRRLKKQVGYSTI 534



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 159/347 (45%), Gaps = 48/347 (13%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH+H+   G   +  +   L+ L+ K   +K A ++FD +PQRT+ A+N +I+GY +
Sbjct: 208 GKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQ 267

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  +ES+ L   ++ SG +PD  T   +L  S+C +       + G  +H         
Sbjct: 268 NGLPQESIGLFHLMMESGFQPDSATIVSLL--SSCSQLGA---LDFGCWLHDYADGNGFD 322

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            + VL T+L++ Y + G  S AR VFD M E+NV+  T+MISG+   G+   A E+F + 
Sbjct: 323 LNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTE- 381

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
                                    +  +     N+ F       A++   A  G IDD 
Sbjct: 382 -------------------------MRAYGPRPNNITF------VAVLSACAHSGLIDDG 410

Query: 304 RRVFDHMQQK-----NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           RRVF  M++       V     M+D +G+ G  N A +   + +    +P    +   L 
Sbjct: 411 RRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQF--IKKFIPKEPGPAVWTSMLG 468

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKME-HYACMVDLLGRAGSLEQ 404
           AC      D G ++ E +    S++P+   HY  + ++   AG +++
Sbjct: 469 ACRMHRNFDLGVKVAEHV---LSVEPENPGHYVMLSNIYALAGRMDR 512



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 134/307 (43%), Gaps = 49/307 (15%)

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
           P  RNL + VHA I+   +     L T L+      G  +YAR +F  +   +     S+
Sbjct: 102 PRLRNL-QQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSL 160

Query: 224 ISGFMSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
           +      GF  D    +R+ +     +    + ++I+  +  +   R   E+H  ++   
Sbjct: 161 LKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACA-DLSALRLGKEIHSHVMVCG 219

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
           +  D+ + +AL+ +YAK   +  A++VFD M Q+ +  W S+I GY +NG P +++ LF 
Sbjct: 220 YGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFH 279

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVD-------------------------------- 367
           +M E   QP+  T +  LS+C   G +D                                
Sbjct: 280 LMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCG 339

Query: 368 ---KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVW 421
              K RE+F+SM+     +  +  +  M+   G  G   QA++   EM     +PN+  +
Sbjct: 340 NVSKAREVFDSMK-----ERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITF 394

Query: 422 AALLSSC 428
            A+LS+C
Sbjct: 395 VAVLSAC 401



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 142/349 (40%), Gaps = 65/349 (18%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G  +H +    G   N  +   L+ ++ +CG +  A ++FD + +R +  +  MI+GY 
Sbjct: 308 FGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYG 367

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            +G   +++ L  ++ + G RP+  TF  +L A  C  S +    + GR V         
Sbjct: 368 MHGYGRQAMELFTEMRAYGPRPNNITFVAVLSA--CAHSGLI---DDGRRV--------- 413

Query: 183 KADDVLYTALVDSY--VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
                 ++++ ++Y  V G             +E NV     M+  F   G + DA +  
Sbjct: 414 ------FSSMKEAYGLVPG-------------VEHNV----CMVDMFGRAGLLNDAYQFI 450

Query: 241 RKTVEKD--IVVYNAMI------EGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVD 292
           +K + K+    V+ +M+        + + ++ A   L V          E+      L +
Sbjct: 451 KKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEP--------ENPGHYVMLSN 502

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV- 351
           +YA  G++D    V + M ++ +        GY      N+   LF M  +   Q N + 
Sbjct: 503 IYALAGRMDRVEMVRNMMTRRRLKKQV----GY-STIEINRKTYLFSMGDKSHPQTNTIY 557

Query: 352 TFLGAL-SACGHAGLVDKGREI---FESMERDYSMKPKMEHYACMVDLL 396
            +L  L   C  +G V     +    E  ERDY+++   E  A    LL
Sbjct: 558 RYLDELMCRCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLL 606


>gi|449433141|ref|XP_004134356.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  262 bits (669), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 151/437 (34%), Positives = 246/437 (56%), Gaps = 16/437 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H  + K  +  +  I   LL ++  CG LK A  +F+ +  R    +  MI+GY+K
Sbjct: 98  GKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMK 157

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N    E+L L +K+   G  PD  T + ++ A   C     L   +G  +H+ I + D+K
Sbjct: 158 NHCPNEALLLYKKMEEDGFSPDEVTMATLVSA---CAELKDL--GVGMKLHSHIREMDMK 212

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
              VL +ALV+ Y K G    AR VFD + +K+V   +++I G++      +A ++FR+ 
Sbjct: 213 ICAVLGSALVNMYAKCGDLKTARQVFDKLSDKDVYAWSALIFGYVKNNRSTEALQLFREV 272

Query: 244 -----VEKDIVVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
                +  + V   A+I   +    +ET R    VH  + +      V L ++L+DM++K
Sbjct: 273 AGGSNMRPNEVTILAVISACAQLGDLETGR---WVHDYITRTQKGHSVSLNNSLIDMFSK 329

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG ID A+R+FD M  K++ +W SM++G+  +G   +AL  F +MQ   +QP+ +TF+G 
Sbjct: 330 CGDIDAAKRIFDSMSYKDLISWNSMVNGFALHGLGREALAQFRLMQTTDLQPDEITFIGV 389

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           L+AC HAGLV +G+++F  +E  Y ++ K EHY CMVDLL RAG L +A +F+  MP +P
Sbjct: 390 LTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQP 449

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
           +  +W ++L +CR+++++E+   AA  + KL   +  G Y+ LSN  A    W+ V ++R
Sbjct: 450 DGAIWGSMLGACRVYNNLELGEEAARFLLKLEPTN-DGVYILLSNIYAKRKMWNEVKKVR 508

Query: 477 EKMKLRGVLKDTGCSWV 493
           E M  +G+ K  GCS V
Sbjct: 509 ELMNEKGIQKTPGCSSV 525



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 184/370 (49%), Gaps = 33/370 (8%)

Query: 77  KPNTNISIKLLILHLKCGALK--YAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESL-SL 133
           KP+ N   KL+   L  G+L   YA  +F    +  +  +N M+  ++ +     +L S 
Sbjct: 10  KPSLN---KLIAHVLSMGSLGVGYAYSVFAHTRELDVLTWNSMLRAFVNSNMPRRALQSY 66

Query: 134 VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALV 193
              L  S   PD +TF  +LK        + L   +G+++H Q++K  + +D  + T L+
Sbjct: 67  TEMLERSRNVPDRFTFPSLLKGCA-----LLLEFKVGKVLHGQVVKYMLHSDLYIETTLL 121

Query: 194 DSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNA 253
           + Y   G    AR +F+ M  +N +  TSMISG+M      +A  +++K +E+D    + 
Sbjct: 122 NMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKK-MEEDGFSPDE 180

Query: 254 MIEGYSISIETARKALEVHCQLIKNVFFEDVK----LGSALVDMYAKCGKIDDARRVFDH 309
           +     +S     K L V  +L  ++   D+K    LGSALV+MYAKCG +  AR+VFD 
Sbjct: 181 VTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDK 240

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC----VQPNYVTFLGALSACGHAGL 365
           +  K+V+ W+++I GY KN    +AL+LF   +E      ++PN VT L  +SAC   G 
Sbjct: 241 LSDKDVYAWSALIFGYVKNNRSTEALQLF---REVAGGSNMRPNEVTILAVISACAQLGD 297

Query: 366 VDKGREIFESMERDYSMKPKMEHYA----CMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
           ++ GR +      DY  + +  H       ++D+  + G ++ A +    M  K +   W
Sbjct: 298 LETGRWV-----HDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYK-DLISW 351

Query: 422 AALLSSCRLH 431
            ++++   LH
Sbjct: 352 NSMVNGFALH 361


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  262 bits (669), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 160/498 (32%), Positives = 265/498 (53%), Gaps = 18/498 (3%)

Query: 13  SSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATS---LPSALQHYINSDTPFYGLKIHA 69
           S + N   T +  N+ F   +++Y+S+       S   L SAL    +      G + H 
Sbjct: 169 SVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSSCASLGCILLGQQTHG 228

Query: 70  HITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG-QVE 128
              K G+  + ++S  LL L+ +   L    ++F  + +R   ++N +I     +G  V 
Sbjct: 229 EGIKLGLDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVS 288

Query: 129 ESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVL 188
           E++ +  +++ +G  P+  TF  +L   +   ++      L   +HA ILK +VK D+ +
Sbjct: 289 EAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTS-----KLSHQIHALILKYNVKDDNAI 343

Query: 189 YTALVDSYVKGGKTSYARIVFDMMLEK-NVICSTSMISGFMSQGFVEDAEEIFRKTVEK- 246
             AL+  Y K G+      +F  M E+ + +   SMISG++    +  A ++    +++ 
Sbjct: 344 ENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRG 403

Query: 247 ---DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
              D   +  ++   + ++ T    +EVH   I+     DV +GSALVDMY+KCG+ID A
Sbjct: 404 QRLDCFTFATVLSACA-TVATLECGMEVHACAIRACLESDVVIGSALVDMYSKCGRIDYA 462

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
            R F+ M  +N+++W SMI GY ++G+ + AL LF  M+     P+++TF+G LSAC H 
Sbjct: 463 SRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHI 522

Query: 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA 423
           GLVD+G E F+SM   Y + P++EHY+CMVDLLGRAG L++   F+ +MP KPN  +W  
Sbjct: 523 GLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFINKMPIKPNILIWRT 582

Query: 424 LLSSCRLHD--DVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
           +L +C   +    E+   AA  +F ++  +    YV LSN  A+ GKW+ +   R  M+ 
Sbjct: 583 VLGACCRGNGRKTELGRRAAEMLFNMDPQNAVN-YVLLSNMYASGGKWEDMARTRRAMRE 641

Query: 482 RGVLKDTGCSWVGTESGL 499
             V K+ GCSWV  + G+
Sbjct: 642 AAVKKEAGCSWVTMKDGV 659



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/365 (23%), Positives = 178/365 (48%), Gaps = 10/365 (2%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
            H ++ K G   +  +   L+ ++++ G    A ++FDE+P R    +  +I+GY +NG 
Sbjct: 22  FHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGM 81

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK-AD 185
            E++  ++++++  G  P+ + F   ++A   C+ ++ L R  GR VH   ++  +  A 
Sbjct: 82  PEDACGVLKEMIFEGFLPNRFAFGSAIRA---CQESM-LWRRKGRQVHGYAIRTGLNDAK 137

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             +   L++ Y K G   +AR VF +M++K+ +   SMI+G       EDA + +    +
Sbjct: 138 VAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRK 197

Query: 246 KDIVVYN-AMIEGYS--ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
             ++  N A+I   S   S+       + H + IK     DV + + L+ +YA+  ++ +
Sbjct: 198 TGLMPSNFALISALSSCASLGCILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETSRLAE 257

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNG-NPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            ++VF  M +++  +W ++I     +G + ++A+E+F  M      PN VTF+  L+   
Sbjct: 258 CQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVS 317

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
                    +I  ++   Y++K        ++   G++G +E   +    M E+ +   W
Sbjct: 318 SLSTSKLSHQI-HALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSW 376

Query: 422 AALLS 426
            +++S
Sbjct: 377 NSMIS 381



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 5/205 (2%)

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
           + H  +LK    +D  L   L++ YV+ G    AR +FD M ++N +    +ISG+   G
Sbjct: 21  LFHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNG 80

Query: 232 FVEDAEEIFRKTVEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFE-DVKL 286
             EDA  + ++ + +  +     + + I     S+   RK  +VH   I+    +  V +
Sbjct: 81  MPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAV 140

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
           G+ L++MYAKCG ID AR VF  M  K+  +W SMI G  +N     A++ +  M++  +
Sbjct: 141 GNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGL 200

Query: 347 QPNYVTFLGALSACGHAGLVDKGRE 371
            P+    + ALS+C   G +  G++
Sbjct: 201 MPSNFALISALSSCASLGCILLGQQ 225


>gi|449467070|ref|XP_004151248.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Cucumis sativus]
          Length = 617

 Score =  262 bits (669), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 158/476 (33%), Positives = 255/476 (53%), Gaps = 44/476 (9%)

Query: 57  NSDTPFYGLKIHAHITKTGVKPNTNISI-KLLILHLKCGALKYAGQMFDELPQRTLSAYN 115
           N  +PF   ++HAH+ KT   P +++ + ++  +     +  YA  +F  L    ++ +N
Sbjct: 24  NFTSPFELKQLHAHLLKTN-SPLSSLPLSRVASVCAFNSSFSYAKLIFQLLDASEVTHWN 82

Query: 116 YMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA 175
             +  + +     +++SL  +L      PD YT S +LKA     S +   RN G++VH 
Sbjct: 83  TCLRSFAEGDSPADAISLFYRLREFDISPDHYTCSFVLKAC----SRLLDVRN-GKIVHG 137

Query: 176 QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
            + K  ++++  L   +V  Y   G+   AR VFD M +++VI    MI+  +  G  E 
Sbjct: 138 YVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARLVKMGDAEG 197

Query: 236 AEEIFRKTVEKDIVVYNAMIEGYS--------------------ISIETARKALEVHCQL 275
           A ++F +  E+++  + +MI GY+                    +  E    A+ V C  
Sbjct: 198 AYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVVAVLVACAD 257

Query: 276 IKNVFF--------------EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
           + N+                +++++ + L+DMY KCG ++DA R+FD+M+++ V +W++M
Sbjct: 258 MGNLVLGRRIHDFSNRSGYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEERTVVSWSAM 317

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           I G   +G    AL LF  M    V+PN VTF+G L AC H G+V+KGR+ F SM RDY 
Sbjct: 318 IAGLAAHGRAEDALALFNKMINTGVKPNAVTFIGILHACSHMGMVEKGRKYFASMTRDYG 377

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441
           + P++EHY CMVDL  RAG L++A +F++ MP  PN  VW ALL  C++H ++++A  A 
Sbjct: 378 IVPRIEHYGCMVDLFSRAGLLQEAHEFIMNMPIAPNGVVWGALLGGCKVHKNIKLAEEAT 437

Query: 442 NEIFKLNA-NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
             + KL+  ND  G YV LSN  A AG+W+ V  +R+ M+ RGV K  G S +  E
Sbjct: 438 RHLSKLDPLND--GYYVVLSNIYAEAGRWEDVARVRKLMRDRGVKKTPGWSSIMVE 491



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 84/341 (24%), Positives = 142/341 (41%), Gaps = 49/341 (14%)

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
           + ST    N   P  L + +HA +LK +     +  + +          SYA+++F ++ 
Sbjct: 16  RPSTHLLHNFTSPFEL-KQLHAHLLKTNSPLSSLPLSRVASVCAFNSSFSYAKLIFQLLD 74

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS--IETARKALEV 271
              V    + +  F       DA  +F +  E DI       + Y+ S  ++   + L+V
Sbjct: 75  ASEVTHWNTCLRSFAEGDSPADAISLFYRLREFDISP-----DHYTCSFVLKACSRLLDV 129

Query: 272 HCQLIKNVFFEDVKLGS------ALVDMYAKCGKIDDARRVFDHMQQKNVFT-------- 317
               I + + E + L S       +V +YA CG+I  AR+VFD M Q++V T        
Sbjct: 130 RNGKIVHGYVEKLGLQSNMFLQNMIVHLYALCGEIGVARKVFDKMPQRDVITWNIMIARL 189

Query: 318 -----------------------WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
                                  WTSMI GY + G   +A++LF  M++  + PN VT +
Sbjct: 190 VKMGDAEGAYKLFAEMPERNVRSWTSMIGGYAQCGKSKEAIDLFLEMEDAGLLPNEVTVV 249

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             L AC   G +  GR I +   R    +  +     ++D+  + G LE A +    M E
Sbjct: 250 AVLVACADMGNLVLGRRIHDFSNRS-GYEKNIRVCNTLIDMYVKCGCLEDACRIFDNMEE 308

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA 455
           +     W+A+++    H   E A    N++  +N   +P A
Sbjct: 309 RTVVS-WSAMIAGLAAHGRAEDALALFNKM--INTGVKPNA 346


>gi|357448257|ref|XP_003594404.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355483452|gb|AES64655.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 516

 Score =  261 bits (668), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 169/503 (33%), Positives = 270/503 (53%), Gaps = 27/503 (5%)

Query: 10  SVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHY-INSD----TPFY- 63
           S F S  + H  L  P       + +Y    +P++A +L  +L+   I+ D    TP   
Sbjct: 11  SSFHSQSDHHQLLHRPISELNSLITSYIRRGHPISAFNLFLSLRRIRIDLDSHTFTPLLR 70

Query: 64  ------GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYM 117
                 G ++H+ + KTG    T     LL ++ + G+L  + ++FDE+  R + A+N +
Sbjct: 71  PSPTSLGKQLHSQMIKTGSDSGTVPKTALLDMYSRHGSLNSSLKVFDEMLHRDVVAWNTL 130

Query: 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQI 177
           ++ +L+ G+ +E++ ++R++         +T   +LK   CC S   L    GR VH  +
Sbjct: 131 LSCFLRCGKPDEAIRVLREMGRENVEMSEFTLCSVLK---CCASLKAL--EFGRQVHGLV 185

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVF-DMMLEKNVICSTSMISGFMSQGFVEDA 236
           +    +   VL TAL+D Y   G   +A  VF  +   K+ +   S++SG +  G   +A
Sbjct: 186 VAMG-RDLVVLSTALIDFYSSVGCVHHALNVFYGLKGWKDDMIHNSLVSGCIKNGRYREA 244

Query: 237 EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
            ++        + + + ++     S     K  +VHC  ++  F  + +L + L+DMYAK
Sbjct: 245 FKVMSLVKPNAVALTSVLVCCSEESDLLTGK--QVHCVAVRQGFTFETQLCNVLLDMYAK 302

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE--CCVQPNYVTFL 354
           CGKI  A  VFD + QK+V +WT MIDGYG+NG   +A+ELF  M E    V PN VTFL
Sbjct: 303 CGKILQAWSVFDGIFQKDVISWTCMIDGYGRNGCGYEAVELFWKMMEDGSEVLPNSVTFL 362

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQ---ALKFVLE 411
             LSACGH+GLV++G++ F  M+  Y + P+ EHYAC +D+LGRAG +E+   A + +++
Sbjct: 363 SVLSACGHSGLVEEGKQCFNIMKEKYGIDPEPEHYACFIDILGRAGKIEEVWSAYQNMID 422

Query: 412 MPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471
               P + VW +LL++C L  D E    AA  + +L  N      +A SN  AA G+WD 
Sbjct: 423 QGTSPTAGVWISLLNACSLGQDFERGEFAAKSLLQLEPNKASNIVLA-SNFYAAIGRWDC 481

Query: 472 VTELREKMKLRGVLKDTGCSWVG 494
           V ELR  M+ +G++K+ G SW+G
Sbjct: 482 VGELRSMMREKGLVKEAGNSWIG 504


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  261 bits (668), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 156/439 (35%), Positives = 241/439 (54%), Gaps = 13/439 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H ++ K+G   N+ +   LL L+ KCG ++ A  +FDEL    L ++  MI GY +
Sbjct: 257 GKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQ 316

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G   E+L L          P+  T S +L A  C ++      N+GR VH   +K   +
Sbjct: 317 RGYPREALKLFTDERWKDLLPNTVTTSSVLSA--CAQTG---SLNMGRSVHCLGIKLGSE 371

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK- 242
            D     ALVD Y K      AR VF+ + +K+VI   S+ISG+   G+  +A E+F + 
Sbjct: 372 -DATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQM 430

Query: 243 ---TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIK-NVFFEDVKLGSALVDMYAKCG 298
              +V  D +   +++   + S+   R    +H   IK  +    V +G+AL++ YAKCG
Sbjct: 431 RSDSVYPDAITLVSVLSACA-SVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCG 489

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
             + AR +FD M +KN  TW++MI GYG  G+ +++LELF  M +  ++PN V F   LS
Sbjct: 490 DAESARVIFDEMGEKNTITWSAMIGGYGIQGDCSRSLELFGDMLKEKLEPNEVIFTTILS 549

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC H+G++ +G   F +M + Y+  P M+HYACMVDLL RAG LE+AL F+ ++P +P+ 
Sbjct: 550 ACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYACMVDLLARAGRLEEALDFIEKIPIQPDV 609

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            +  A L  CRLH   ++  +A   + +L+  D+   YV +SN  A+ G+W    ++ E 
Sbjct: 610 SLLGAFLHGCRLHSRFDLGEVAVRRMLELHP-DKACYYVLMSNLYASEGRWSQANQVMEL 668

Query: 479 MKLRGVLKDTGCSWVGTES 497
           MK RG+ K  G S V  E+
Sbjct: 669 MKQRGLAKLPGWSLVDIET 687



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 108/373 (28%), Positives = 180/373 (48%), Gaps = 11/373 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G K+H  I K G  P++ +   L+ ++ KC  ++ + ++FDE+  R +  +  MI GY++
Sbjct: 157 GRKLHCQIVKVG-SPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQ 215

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N  ++E L L  ++       + YT   ++ A T   +      + G+ VH  ++K    
Sbjct: 216 NDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGA-----LHQGKWVHGYVIKSGFD 270

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +  L T L+D Y K G    A  VFD +   +++  T+MI G+  +G+  +A ++F   
Sbjct: 271 LNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDE 330

Query: 244 VEKDIV---VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
             KD++   V  + +        +      VHC  IK +  ED    +ALVDMYAKC  I
Sbjct: 331 RWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIK-LGSEDATFENALVDMYAKCHMI 389

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
            DAR VF+ +  K+V  W S+I GY +NG   +ALELF  M+   V P+ +T +  LSAC
Sbjct: 390 GDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAITLVSVLSAC 449

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
              G    G  +     +   +   +     +++   + G  E A     EM EK N+  
Sbjct: 450 ASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFDEMGEK-NTIT 508

Query: 421 WAALLSSCRLHDD 433
           W+A++    +  D
Sbjct: 509 WSAMIGGYGIQGD 521



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/312 (32%), Positives = 156/312 (50%), Gaps = 12/312 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           KIHA +   G+  +     KL+ L+   G ++ A  MFD +    L ++  MI  Y  N 
Sbjct: 57  KIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLND 116

Query: 126 QVEESLSLVR-KLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
              E +     +L       D   FS++LKA +  R       + GR +H QI+K     
Sbjct: 117 SYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRET-----DEGRKLHCQIVKVG-SP 170

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
           D  + T LVD Y K  +   +R VFD +L++NV+C TSMI G++    +++   +F +  
Sbjct: 171 DSFVLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMR 230

Query: 245 EKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           E  +V  N    G  ++  T   AL     VH  +IK+ F  +  L + L+D+Y KCG I
Sbjct: 231 E-GLVEGNQYTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDI 289

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
            DA  VFD +   ++ +WT+MI GY + G P +AL+LF   +   + PN VT    LSAC
Sbjct: 290 RDAFSVFDELSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSAC 349

Query: 361 GHAGLVDKGREI 372
              G ++ GR +
Sbjct: 350 AQTGSLNMGRSV 361



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/207 (32%), Positives = 111/207 (53%), Gaps = 7/207 (3%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG-FMS 229
           R +HA ++   +  D +  T LV  Y   G    AR++FD +   ++     MI   F++
Sbjct: 56  RKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMIRWYFLN 115

Query: 230 QGFVEDAE---EIFRKTV-EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
             + E  +      RK + E D VV++ +++  S   ET  +  ++HCQ++K V   D  
Sbjct: 116 DSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRET-DEGRKLHCQIVK-VGSPDSF 173

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           + + LVDMYAKC +++D+RRVFD +  +NV  WTSMI GY +N    + L LF  M+E  
Sbjct: 174 VLTGLVDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGL 233

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREI 372
           V+ N  T    ++AC   G + +G+ +
Sbjct: 234 VEGNQYTLGSLVTACTKLGALHQGKWV 260



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/164 (21%), Positives = 80/164 (48%), Gaps = 4/164 (2%)

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
           +T     ++H  L+ +   ED+   + LV +Y   G ++ AR +FD ++  ++++W  MI
Sbjct: 50  KTVSSLRKIHALLVVHGLSEDLLCETKLVSLYGSFGHVECARLMFDRIRNPDLYSWKVMI 109

Query: 323 DGYGKNGNPNQALELF-CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
             Y  N + ++ ++ +   +++C  + + V F   L AC      D+GR++   + +  S
Sbjct: 110 RWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVLKACSELRETDEGRKLHCQIVKVGS 169

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
             P       +VD+  +   +E + +   E+ ++ N   W +++
Sbjct: 170 --PDSFVLTGLVDMYAKCREVEDSRRVFDEILDR-NVVCWTSMI 210


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  261 bits (668), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 141/440 (32%), Positives = 248/440 (56%), Gaps = 11/440 (2%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           F G ++H    K+G   +  ++  +L L+ KC AL  A  +F  + Q+   ++N +IA  
Sbjct: 368 FQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAAL 427

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            +NG  ++++    +++  G +PD +T+  +LKA    RS        G MVH +++K  
Sbjct: 428 EQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRS-----LEYGLMVHDKVIKSG 482

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           + +D  + + +VD Y K G    A+ + D +  + V+   +++SGF      E+A++ F 
Sbjct: 483 LGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFS 542

Query: 242 KTVE----KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           + ++     D   +  +++  + ++ T     ++H Q+IK    +D  + S LVDMYAKC
Sbjct: 543 EMLDMGLKPDHFTFATVLDTCA-NLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKC 601

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G + D+  VF+ +++++  +W +MI GY  +G   +AL +F  MQ+  V PN+ TF+  L
Sbjct: 602 GDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVL 661

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            AC H GL D G   F  M   Y ++P++EH+ACMVD+LGR+   ++A+KF+  MP + +
Sbjct: 662 RACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQAD 721

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
           + +W  LLS C++  DVE+A +AA+ +  L+ +D    Y+ LSN  A +GKW  V+  R 
Sbjct: 722 AVIWKTLLSICKIRQDVEIAELAASNVLLLDPDD-SSVYILLSNVYAESGKWADVSRTRR 780

Query: 478 KMKLRGVLKDTGCSWVGTES 497
            +K   + K+ GCSW+  +S
Sbjct: 781 LLKQGRLKKEPGCSWIEVQS 800



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 176/372 (47%), Gaps = 12/372 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HAH  K     +  +   ++ ++ K  +L  A + F  LP  T+   N M+ G ++
Sbjct: 269 GRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVR 328

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G   E++ L + ++ S  R D  + S +   S C  +        G+ VH   +K    
Sbjct: 329 AGLGIEAMGLFQFMIRSSIRFDVVSLSGVF--SACAETKGYFQ---GQQVHCLAIKSGFD 383

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEI 239
            D  +  A++D Y K      A ++F  M +K+ +   ++I+     G  +D      E+
Sbjct: 384 VDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEM 443

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            R  ++ D   Y ++++  + ++ +    L VH ++IK+    D  + S +VDMY KCG 
Sbjct: 444 LRFGMKPDDFTYGSVLKACA-ALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGI 502

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ID+A+++ D +  + V +W +++ G+  N    +A + F  M +  ++P++ TF   L  
Sbjct: 503 IDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDT 562

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C +   ++ G++I   + +   +  +    + +VD+  + G +  +L  V E  EK +  
Sbjct: 563 CANLATIELGKQIHGQIIKQEMLDDEYIS-STLVDMYAKCGDMPDSL-LVFEKVEKRDFV 620

Query: 420 VWAALLSSCRLH 431
            W A++    LH
Sbjct: 621 SWNAMICGYALH 632



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 111/460 (24%), Positives = 196/460 (42%), Gaps = 51/460 (11%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+++HA   KTG++ +      L+ ++ KC +L  A   F  +P+R   ++   IAG ++
Sbjct: 168 GVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQ 227

Query: 124 NGQVEESLSLVRKL--VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           N Q    L L  ++  +  G     Y  +    A+  C        N GR +HA  +K  
Sbjct: 228 NEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSC-------LNTGRQLHAHAIKNK 280

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF- 240
             +D V+ TA+VD Y K    + AR  F  +    V  S +M+ G +  G   +A  +F 
Sbjct: 281 FSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQ 340

Query: 241 ---RKTVEKDIVVYNAMIEGYSISIETAR--KALEVHCQLIKNVFFEDVKLGSALVDMYA 295
              R ++  D+V  + +   +S   ET    +  +VHC  IK+ F  D+ + +A++D+Y 
Sbjct: 341 FMIRSSIRFDVVSLSGV---FSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYG 397

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KC  + +A  +F  M+QK+  +W ++I    +NG+ +  +  F  M    ++P+  T+  
Sbjct: 398 KCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGS 457

Query: 356 ALSACG-----HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL-------- 402
            L AC        GL+   + I   +  D  +   +    C   ++  A  L        
Sbjct: 458 VLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQ 517

Query: 403 -----------------EQALKF---VLEMPEKPNSDVWAALLSSCRLHDDVEMANIAAN 442
                            E+A KF   +L+M  KP+   +A +L +C     +E+      
Sbjct: 518 VVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHG 577

Query: 443 EIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
           +I K    D       L +  A  G       + EK++ R
Sbjct: 578 QIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKR 617



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 174/388 (44%), Gaps = 20/388 (5%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           +L  +   G +  A  +FD +P   + ++N +++GY + G  +ES+ L  ++   G  PD
Sbjct: 89  MLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPD 148

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
             TF+++LK+ +          +LG  VHA  +K  ++ D    +ALVD Y K      A
Sbjct: 149 RTTFAVLLKSCSALEE-----LSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDA 203

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV----YNAMIEGYSIS 261
              F  M E+N +   + I+G +         E+F +     + V    Y +     + +
Sbjct: 204 LCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCA-A 262

Query: 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
           +       ++H   IKN F  D  +G+A+VD+YAK   + DARR F  +    V T  +M
Sbjct: 263 MSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAM 322

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           + G  + G   +A+ LF  M    ++ + V+  G  SAC       +G+++        +
Sbjct: 323 MVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQV-----HCLA 377

Query: 382 MKPKMEHYAC----MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           +K   +   C    ++DL G+  +L +A      M +K +S  W A++++   +   +  
Sbjct: 378 IKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQK-DSVSWNAIIAALEQNGHYDDT 436

Query: 438 NIAANEIFKLNANDRPGAYVALSNTLAA 465
            +  NE+ +         Y ++    AA
Sbjct: 437 ILHFNEMLRFGMKPDDFTYGSVLKACAA 464



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 117/235 (49%), Gaps = 6/235 (2%)

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-- 240
           + D V +  ++ +Y   G  S A  +FD M + +V+   +++SG+  +G  +++ ++F  
Sbjct: 80  RRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVE 139

Query: 241 --RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
             R+ V  D   +  +++  S ++E     ++VH   +K     DV+ GSALVDMY KC 
Sbjct: 140 MARRGVSPDRTTFAVLLKSCS-ALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCR 198

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            +DDA   F  M ++N  +W + I G  +N    + LELF  MQ   +  +  ++  A  
Sbjct: 199 SLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFR 258

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           +C     ++ GR++     ++     ++   A +VD+  +A SL  A +    +P
Sbjct: 259 SCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTA-IVDVYAKANSLTDARRAFFGLP 312



 Score = 47.0 bits (110), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 81/186 (43%), Gaps = 33/186 (17%)

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-------------------- 313
           +++ + F     + + L+ MYA+C     ARRVFD M ++                    
Sbjct: 42  RMVVSGFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDIST 101

Query: 314 -----------NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
                      +V +W +++ GY + G   ++++LF  M    V P+  TF   L +C  
Sbjct: 102 AVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSA 161

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
              +  G ++  ++     ++  +   + +VD+ G+  SL+ AL F   MPE+ N   W 
Sbjct: 162 LEELSLGVQV-HALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPER-NWVSWG 219

Query: 423 ALLSSC 428
           A ++ C
Sbjct: 220 AAIAGC 225


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  261 bits (668), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 141/440 (32%), Positives = 248/440 (56%), Gaps = 11/440 (2%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           F G ++H    K+G   +  ++  +L L+ KC AL  A  +F  + Q+   ++N +IA  
Sbjct: 368 FQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAAL 427

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            +NG  ++++    +++  G +PD +T+  +LKA    RS        G MVH +++K  
Sbjct: 428 EQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRS-----LEYGLMVHDKVIKSG 482

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           + +D  + + +VD Y K G    A+ + D +  + V+   +++SGF      E+A++ F 
Sbjct: 483 LGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFS 542

Query: 242 KTVE----KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           + ++     D   +  +++  + ++ T     ++H Q+IK    +D  + S LVDMYAKC
Sbjct: 543 EMLDMGLKPDHFTFATVLDTCA-NLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKC 601

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G + D+  VF+ +++++  +W +MI GY  +G   +AL +F  MQ+  V PN+ TF+  L
Sbjct: 602 GDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVL 661

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            AC H GL D G   F  M   Y ++P++EH+ACMVD+LGR+   ++A+KF+  MP + +
Sbjct: 662 RACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQAD 721

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
           + +W  LLS C++  DVE+A +AA+ +  L+ +D    Y+ LSN  A +GKW  V+  R 
Sbjct: 722 AVIWKTLLSICKIRQDVEIAELAASNVLLLDPDD-SSVYILLSNVYAESGKWADVSRTRR 780

Query: 478 KMKLRGVLKDTGCSWVGTES 497
            +K   + K+ GCSW+  +S
Sbjct: 781 LLKQGRLKKEPGCSWIEVQS 800



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 176/372 (47%), Gaps = 12/372 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HAH  K     +  +   ++ ++ K  +L  A + F  LP  T+   N M+ G ++
Sbjct: 269 GRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVR 328

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G   E++ L + ++ S  R D  + S +   S C  +        G+ VH   +K    
Sbjct: 329 AGLGIEAMGLFQFMIRSSIRFDVVSLSGVF--SACAETKGYFQ---GQQVHCLAIKSGFD 383

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEI 239
            D  +  A++D Y K      A ++F  M +K+ +   ++I+     G  +D      E+
Sbjct: 384 VDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEM 443

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            R  ++ D   Y ++++  + ++ +    L VH ++IK+    D  + S +VDMY KCG 
Sbjct: 444 LRFGMKPDDFTYGSVLKACA-ALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGI 502

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ID+A+++ D +  + V +W +++ G+  N    +A + F  M +  ++P++ TF   L  
Sbjct: 503 IDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDT 562

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C +   ++ G++I   + +   +  +    + +VD+  + G +  +L  V E  EK +  
Sbjct: 563 CANLATIELGKQIHGQIIKQEMLDDEYIS-STLVDMYAKCGDMPDSL-LVFEKVEKRDFV 620

Query: 420 VWAALLSSCRLH 431
            W A++    LH
Sbjct: 621 SWNAMICGYALH 632



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 111/460 (24%), Positives = 196/460 (42%), Gaps = 51/460 (11%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+++HA   KTG++ +      L+ ++ KC +L  A   F  +P+R   ++   IAG ++
Sbjct: 168 GVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQ 227

Query: 124 NGQVEESLSLVRKL--VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           N Q    L L  ++  +  G     Y  +    A+  C        N GR +HA  +K  
Sbjct: 228 NEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSC-------LNTGRQLHAHAIKNK 280

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF- 240
             +D V+ TA+VD Y K    + AR  F  +    V  S +M+ G +  G   +A  +F 
Sbjct: 281 FSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQ 340

Query: 241 ---RKTVEKDIVVYNAMIEGYSISIETAR--KALEVHCQLIKNVFFEDVKLGSALVDMYA 295
              R ++  D+V  + +   +S   ET    +  +VHC  IK+ F  D+ + +A++D+Y 
Sbjct: 341 FMIRSSIRFDVVSLSGV---FSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYG 397

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KC  + +A  +F  M+QK+  +W ++I    +NG+ +  +  F  M    ++P+  T+  
Sbjct: 398 KCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGS 457

Query: 356 ALSACG-----HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL-------- 402
            L AC        GL+   + I   +  D  +   +    C   ++  A  L        
Sbjct: 458 VLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQ 517

Query: 403 -----------------EQALKF---VLEMPEKPNSDVWAALLSSCRLHDDVEMANIAAN 442
                            E+A KF   +L+M  KP+   +A +L +C     +E+      
Sbjct: 518 VVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHG 577

Query: 443 EIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
           +I K    D       L +  A  G       + EK++ R
Sbjct: 578 QIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKR 617



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 174/388 (44%), Gaps = 20/388 (5%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           +L  +   G +  A  +FD +P   + ++N +++GY + G  +ES+ L  ++   G  PD
Sbjct: 89  MLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPD 148

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
             TF+++LK+ +          +LG  VHA  +K  ++ D    +ALVD Y K      A
Sbjct: 149 RTTFAVLLKSCSALEE-----LSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDA 203

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV----YNAMIEGYSIS 261
              F  M E+N +   + I+G +         E+F +     + V    Y +     + +
Sbjct: 204 LCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCA-A 262

Query: 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
           +       ++H   IKN F  D  +G+A+VD+YAK   + DARR F  +    V T  +M
Sbjct: 263 MSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAM 322

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           + G  + G   +A+ LF  M    ++ + V+  G  SAC       +G+++        +
Sbjct: 323 MVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQV-----HCLA 377

Query: 382 MKPKMEHYAC----MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           +K   +   C    ++DL G+  +L +A      M +K +S  W A++++   +   +  
Sbjct: 378 IKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQK-DSVSWNAIIAALEQNGHYDDT 436

Query: 438 NIAANEIFKLNANDRPGAYVALSNTLAA 465
            +  NE+ +         Y ++    AA
Sbjct: 437 ILHFNEMLRFGMKPDDFTYGSVLKACAA 464



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 117/235 (49%), Gaps = 6/235 (2%)

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-- 240
           + D V +  ++ +Y   G  S A  +FD M + +V+   +++SG+  +G  +++ ++F  
Sbjct: 80  RRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVE 139

Query: 241 --RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
             R+ V  D   +  +++  S ++E     ++VH   +K     DV+ GSALVDMY KC 
Sbjct: 140 MARRGVSPDRTTFAVLLKSCS-ALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCR 198

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            +DDA   F  M ++N  +W + I G  +N    + LELF  MQ   +  +  ++  A  
Sbjct: 199 SLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFR 258

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           +C     ++ GR++     ++     ++   A +VD+  +A SL  A +    +P
Sbjct: 259 SCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTA-IVDVYAKANSLTDARRAFFGLP 312



 Score = 47.8 bits (112), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 82/186 (44%), Gaps = 33/186 (17%)

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-------------------- 313
           +++ + F  +  + + L+ MYA+C     ARRVFD M ++                    
Sbjct: 42  RMVVSGFVPNAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDIST 101

Query: 314 -----------NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
                      +V +W +++ GY + G   ++++LF  M    V P+  TF   L +C  
Sbjct: 102 AVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSA 161

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
              +  G ++  ++     ++  +   + +VD+ G+  SL+ AL F   MPE+ N   W 
Sbjct: 162 LEELSLGVQV-HALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPER-NWVSWG 219

Query: 423 ALLSSC 428
           A ++ C
Sbjct: 220 AAIAGC 225


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  261 bits (668), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 150/457 (32%), Positives = 252/457 (55%), Gaps = 14/457 (3%)

Query: 41   NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
            NP   TS+   L+  +   +   G  IHA   KT      ++   LL ++ KCG ++ A 
Sbjct: 631  NPFALTSV---LRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDAR 687

Query: 101  QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
              F+ +    +  ++ MI+ Y +  Q E++  L  +++ S   P+ ++ S +L+A     
Sbjct: 688  LAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQAC---- 743

Query: 161  SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
            +N+PL  +LG+ +H   +K   +++  +  AL+D Y K      +  +F  + + N +  
Sbjct: 744  ANMPL-LDLGKQIHNHAIKIGHESELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSW 802

Query: 221  TSMISGFMSQGFVEDAEEIFRK----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLI 276
             ++I G+   GF E A  +FR+    +V    V Y++++   + S  +     +VHC + 
Sbjct: 803  NTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACA-STASINHVGQVHCLIE 861

Query: 277  KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
            K+ F  D  + ++L+D YAKCG I DAR +F+ +++ ++ +W ++I GY  +G    A E
Sbjct: 862  KSTFNSDTIVSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQE 921

Query: 337  LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
            LF MM +  ++ N +TF+  LS CG  GLV +G  +F+SM  D+ ++P MEHY C+V LL
Sbjct: 922  LFDMMSKNSIKANDITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLL 981

Query: 397  GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456
            GRAG L  AL F+ ++P  P++ VW ALLSSC +H +VE+   +A ++ ++   D    Y
Sbjct: 982  GRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQDE-TTY 1040

Query: 457  VALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            V LSN  +AAG  D V   R+ M+  GV K+ G SWV
Sbjct: 1041 VLLSNMYSAAGSLDQVAFFRKSMRNIGVRKEPGLSWV 1077



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 166/354 (46%), Gaps = 19/354 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIK--LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           G  +H H+ ++G     ++     LL ++ K G    A ++FD LP+R + ++  ++ G+
Sbjct: 447 GRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGH 506

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
              G+ EE+ +L ++L   G   + +  + +LK      +       L   VHA   K  
Sbjct: 507 ALRGEFEEASALFQRLRWEGHEVNQFVLTTVLKLVVAMDT-----LGLAWGVHACACKLG 561

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF- 240
              +  + +AL+D+Y   G  S AR VFD ++ K+ +  T+M+S +      E+  +IF 
Sbjct: 562 HDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFS 621

Query: 241 --RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
             R  V K        +   ++ + +      +H   +K ++  +  +  AL+DMYAKCG
Sbjct: 622 KMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHVYGALLDMYAKCG 681

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            I+DAR  F+ +   +V  W+ MI  Y +     QA ELF  M    V PN  +    L 
Sbjct: 682 NIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQ 741

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYA----CMVDLLGRAGSLEQALKF 408
           AC +  L+D G++I      ++++K   E        ++DL  +   +E +L+ 
Sbjct: 742 ACANMPLLDLGKQI-----HNHAIKIGHESELFVGNALIDLYAKCSDMESSLEI 790



 Score =  125 bits (315), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 105/440 (23%), Positives = 204/440 (46%), Gaps = 16/440 (3%)

Query: 48  LPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP 107
           L + L+  +  DT      +HA   K G   N  +   L+  +  CG +  A ++FD + 
Sbjct: 534 LTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIV 593

Query: 108 QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR 167
            +   A+  M++ Y +N   E +L +  K+  +  + + +  + +L+A+ C  S V    
Sbjct: 594 GKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRAAVCLSSVV---- 649

Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
            LG+ +HA  +K     +  +Y AL+D Y K G    AR+ F+M+   +VI  + MIS +
Sbjct: 650 -LGKGIHACSVKTLYDTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDVILWSLMISRY 708

Query: 228 MSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFED 283
                 E A E+F    R +V  +    +++++  + ++       ++H   IK     +
Sbjct: 709 AQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACA-NMPLLDLGKQIHNHAIKIGHESE 767

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
           + +G+AL+D+YAKC  ++ +  +F  ++  N  +W ++I GY K+G    AL +F  M+ 
Sbjct: 768 LFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEAALSVFREMRA 827

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE 403
             V    VT+   L AC     ++   ++   +E+       +   + ++D   + G + 
Sbjct: 828 ASVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNS-LIDSYAKCGCIR 886

Query: 404 QALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK--LNANDRPGAYVALSN 461
            A + + E  ++ +   W A++S   +H    MA    + + K  + AND    +VAL +
Sbjct: 887 DA-REIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDI--TFVALLS 943

Query: 462 TLAAAGKWDSVTELREKMKL 481
              + G       L + M+L
Sbjct: 944 VCGSTGLVSQGLSLFDSMRL 963



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 128/264 (48%), Gaps = 11/264 (4%)

Query: 170 GRMVHAQILKCDVKADDVLYTA--LVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
           GR VH  +++    A   L+ A  L++ Y K G    A  VFD + E+N++   +++ G 
Sbjct: 447 GRAVHGHVVRSGGLARLDLFCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGH 506

Query: 228 MSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFED 283
             +G  E+A  +F++      E +  V   +++   ++++T   A  VH    K     +
Sbjct: 507 ALRGEFEEASALFQRLRWEGHEVNQFVLTTVLK-LVVAMDTLGLAWGVHACACKLGHDRN 565

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
             +GSAL+D Y+ CG + DARRVFD +  K+   WT+M+  Y +N  P   L++F  M+ 
Sbjct: 566 AFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRV 625

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFE-SMERDYSMKPKMEHYACMVDLLGRAGSL 402
              + N       L A      V  G+ I   S++  Y  +  +  Y  ++D+  + G++
Sbjct: 626 AVSKLNPFALTSVLRAAVCLSSVVLGKGIHACSVKTLYDTERHV--YGALLDMYAKCGNI 683

Query: 403 EQALKFVLEMPEKPNSDVWAALLS 426
           E A +   EM    +  +W+ ++S
Sbjct: 684 EDA-RLAFEMVTNDDVILWSLMIS 706



 Score = 43.5 bits (101), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 28/114 (24%), Positives = 58/114 (50%)

Query: 40  SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYA 99
           S P T  +  S L+   ++ +  +  ++H  I K+    +T +S  L+  + KCG ++ A
Sbjct: 829 SVPSTQVTYSSVLRACASTASINHVGQVHCLIEKSTFNSDTIVSNSLIDSYAKCGCIRDA 888

Query: 100 GQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
            ++F+ L +  L ++N +I+GY  +GQ   +  L   +  +  + +  TF  +L
Sbjct: 889 REIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKANDITFVALL 942


>gi|115486035|ref|NP_001068161.1| Os11g0583200 [Oryza sativa Japonica Group]
 gi|113645383|dbj|BAF28524.1| Os11g0583200 [Oryza sativa Japonica Group]
          Length = 703

 Score =  261 bits (668), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 149/437 (34%), Positives = 242/437 (55%), Gaps = 15/437 (3%)

Query: 64  GLKIHAHITKTGVKP-NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G +IH+   + G  P +  +S   L ++ K G LK A  +F E+P R + A+N ++   +
Sbjct: 137 GPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAV 196

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            +G+  E++     L  +G  P+  +      A   C   + L  +LG   H  ++KC  
Sbjct: 197 LDGRPLETIEAYFGLREAGGLPNVVSACAFFNA---CAGAMYL--SLGEQFHGFVVKCGF 251

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-- 240
           + D  +  ++VD Y K      AR VFD M  +N +   SM++ +   G  E+A   +  
Sbjct: 252 EMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLG 311

Query: 241 -RKTVEK--DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
            R++ E+  D +V +A+     +      +AL  H   +++    ++ + SALVDMY KC
Sbjct: 312 ARRSGEEPTDFMVSSALTTCAGLLGLHLGRAL--HAVAVRSCIDANIFVASALVDMYGKC 369

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC-MMQECCVQPNYVTFLGA 356
           G ++DA ++F    Q+N+ TW +MI GY   G+   AL +F  M++     PNY+T +  
Sbjct: 370 GCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNV 429

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           +++C   GL   G E+FE+M   + ++P+ EHYAC+VDLLGRAG  EQA + +  MP +P
Sbjct: 430 ITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRP 489

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
           +  VW ALL +C++H   E+  IAA ++F+L+  D  G +V LSN  A+AG+W   T++R
Sbjct: 490 SISVWGALLGACKMHGKTELGRIAAEKLFELDPQDS-GNHVLLSNMFASAGRWAEATDIR 548

Query: 477 EKMKLRGVLKDTGCSWV 493
           ++MK  G+ KD GCSWV
Sbjct: 549 KEMKNVGIKKDPGCSWV 565



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 105/449 (23%), Positives = 190/449 (42%), Gaps = 28/449 (6%)

Query: 48  LPSALQHYINSDTPFYGLKIHAHITKTGVKPNTN--ISIKLLILHLKCGALKYAGQMFDE 105
           L +A +  I S +P  G   HA   +  + P  +  I   L+ L+ K      A      
Sbjct: 18  LAAAFESAIASRSPRLGRAAHARALRL-IAPALSPFICAHLVNLYSKLDLPAAAAAALAS 76

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
            P  T+ +Y   I+G  ++G+   +LS    ++  G RP+ +TF    KA+    ++ P 
Sbjct: 77  DPHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAA----ASAPP 132

Query: 166 PRNLGRMVHAQILKCD-VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
              +G  +H+  ++   +  D  +  A +D Y K G+   AR +F  M  +NV+   +++
Sbjct: 133 RSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVM 192

Query: 225 SGFMSQGF-VEDAEEIFR-------KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLI 276
           +  +  G  +E  E  F          V      +NA      +S+       + H  ++
Sbjct: 193 TNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGE-----QFHGFVV 247

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           K  F  DV + +++VD Y KC     AR VFD M  +N  +W SM+  Y +NG   +A  
Sbjct: 248 KCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFA 307

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
            +   +    +P       AL+ C     +  GR +     R   +   +   + +VD+ 
Sbjct: 308 AYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRS-CIDANIFVASALVDMY 366

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456
           G+ G +E A +   E P++ N   W A++       D + A +  +++ +  + +    Y
Sbjct: 367 GKCGCVEDAEQIFYETPQR-NLVTWNAMIGGYAHIGDAQNALLVFDDMIR--SGETAPNY 423

Query: 457 VALSNTLAA---AGKWDSVTELREKMKLR 482
           + L N + +    G      EL E M+ R
Sbjct: 424 ITLVNVITSCSRGGLTKDGYELFETMRER 452


>gi|449434342|ref|XP_004134955.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33760-like [Cucumis sativus]
          Length = 599

 Score =  261 bits (668), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 146/433 (33%), Positives = 239/433 (55%), Gaps = 12/433 (2%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++HAHI  +G+  + ++  KL+ L    G++ YA ++F  +P      ++ ++    K G
Sbjct: 45  QVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSLLKVTSKFG 104

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              +++   R+++ SG     YTF+ ++KA   C     L   LG+ +H+ ++ C   +D
Sbjct: 105 FSIDTVLFYRRMLFSGAPQSNYTFTSVIKA---CADLSAL--RLGKEIHSHVMVCGYGSD 159

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             +  AL+  Y K      A+ VFD M ++ +I   S+ISG+   G  +++  +F   +E
Sbjct: 160 MYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFHLMME 219

Query: 246 KDIVVYNAMIEGYSISIETARKALEVHCQLIK----NVFFEDVKLGSALVDMYAKCGKID 301
                 +A I    +S  +   AL+  C L      N F  +V LG++L++MY +CG + 
Sbjct: 220 SGFQPDSATIVSL-LSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVS 278

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            AR VFD M+++NV TWT+MI GYG +G   QA+ELF  M+    +PN +TF+  LSAC 
Sbjct: 279 KAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITFVAVLSACA 338

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE-MPEKPNSDV 420
           H+GL+D GR +F SM+  Y + P +EH  CMVD+ GRAG L  A +F+ + +P++P   V
Sbjct: 339 HSGLIDDGRRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQFIKKFIPKEPGPAV 398

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W ++L +CR+H + ++    A  +  +   + PG YV LSN  A AG+ D V  +R  M 
Sbjct: 399 WTSMLGACRMHRNFDLGVKVAEHVLSVEPEN-PGHYVMLSNIYALAGRMDRVEMVRNMMT 457

Query: 481 LRGVLKDTGCSWV 493
            R + K  G S +
Sbjct: 458 RRRLKKQVGYSTI 470



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 94/347 (27%), Positives = 159/347 (45%), Gaps = 48/347 (13%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH+H+   G   +  +   L+ L+ K   +K A ++FD +PQRT+ A+N +I+GY +
Sbjct: 144 GKEIHSHVMVCGYGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQ 203

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  +ES+ L   ++ SG +PD  T   +L  S+C +       + G  +H         
Sbjct: 204 NGLPQESIGLFHLMMESGFQPDSATIVSLL--SSCSQLGA---LDFGCWLHDYADGNGFD 258

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            + VL T+L++ Y + G  S AR VFD M E+NV+  T+MISG+   G+   A E+F + 
Sbjct: 259 LNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYGMHGYGRQAMELFTE- 317

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
                                    +  +     N+ F       A++   A  G IDD 
Sbjct: 318 -------------------------MRAYGPRPNNITF------VAVLSACAHSGLIDDG 346

Query: 304 RRVFDHMQQK-----NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           RRVF  M++       V     M+D +G+ G  N A +   + +    +P    +   L 
Sbjct: 347 RRVFSSMKEAYGLVPGVEHNVCMVDMFGRAGLLNDAYQF--IKKFIPKEPGPAVWTSMLG 404

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKME-HYACMVDLLGRAGSLEQ 404
           AC      D G ++ E +    S++P+   HY  + ++   AG +++
Sbjct: 405 ACRMHRNFDLGVKVAEHV---LSVEPENPGHYVMLSNIYALAGRMDR 448



 Score =  102 bits (253), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 76/307 (24%), Positives = 134/307 (43%), Gaps = 49/307 (15%)

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
           P  RNL + VHA I+   +     L T L+      G  +YAR +F  +   +     S+
Sbjct: 38  PRLRNL-QQVHAHIIVSGLHRSRSLLTKLISLVCTAGSITYARRLFPTVPNPDSFLFDSL 96

Query: 224 ISGFMSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
           +      GF  D    +R+ +     +    + ++I+  +  +   R   E+H  ++   
Sbjct: 97  LKVTSKFGFSIDTVLFYRRMLFSGAPQSNYTFTSVIKACA-DLSALRLGKEIHSHVMVCG 155

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
           +  D+ + +AL+ +YAK   +  A++VFD M Q+ +  W S+I GY +NG P +++ LF 
Sbjct: 156 YGSDMYVQAALIALYAKASDMKVAKKVFDAMPQRTIIAWNSLISGYDQNGLPQESIGLFH 215

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVD-------------------------------- 367
           +M E   QP+  T +  LS+C   G +D                                
Sbjct: 216 LMMESGFQPDSATIVSLLSSCSQLGALDFGCWLHDYADGNGFDLNVVLGTSLINMYTRCG 275

Query: 368 ---KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVW 421
              K RE+F+SM+     +  +  +  M+   G  G   QA++   EM     +PN+  +
Sbjct: 276 NVSKAREVFDSMK-----ERNVVTWTAMISGYGMHGYGRQAMELFTEMRAYGPRPNNITF 330

Query: 422 AALLSSC 428
            A+LS+C
Sbjct: 331 VAVLSAC 337



 Score = 59.3 bits (142), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 77/349 (22%), Positives = 142/349 (40%), Gaps = 65/349 (18%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G  +H +    G   N  +   L+ ++ +CG +  A ++FD + +R +  +  MI+GY 
Sbjct: 244 FGCWLHDYADGNGFDLNVVLGTSLINMYTRCGNVSKAREVFDSMKERNVVTWTAMISGYG 303

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            +G   +++ L  ++ + G RP+  TF  +L A  C  S +    + GR V         
Sbjct: 304 MHGYGRQAMELFTEMRAYGPRPNNITFVAVLSA--CAHSGLI---DDGRRV--------- 349

Query: 183 KADDVLYTALVDSY--VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
                 ++++ ++Y  V G             +E NV     M+  F   G + DA +  
Sbjct: 350 ------FSSMKEAYGLVPG-------------VEHNV----CMVDMFGRAGLLNDAYQFI 386

Query: 241 RKTVEKD--IVVYNAMI------EGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVD 292
           +K + K+    V+ +M+        + + ++ A   L V          E+      L +
Sbjct: 387 KKFIPKEPGPAVWTSMLGACRMHRNFDLGVKVAEHVLSVEP--------ENPGHYVMLSN 438

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV- 351
           +YA  G++D    V + M ++ +        GY      N+   LF M  +   Q N + 
Sbjct: 439 IYALAGRMDRVEMVRNMMTRRRLKKQV----GY-STIEINRKTYLFSMGDKSHPQTNTIY 493

Query: 352 TFLGALSA-CGHAGLVDKGREI---FESMERDYSMKPKMEHYACMVDLL 396
            +L  L   C  +G V     +    E  ERDY+++   E  A    LL
Sbjct: 494 RYLDELMCRCSESGYVPAPESLMHDLEEEERDYALRYHSEKLALAFGLL 542


>gi|77551591|gb|ABA94388.1| PPR986-12, putative, expressed [Oryza sativa Japonica Group]
          Length = 694

 Score =  261 bits (668), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 149/437 (34%), Positives = 242/437 (55%), Gaps = 15/437 (3%)

Query: 64  GLKIHAHITKTGVKP-NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G +IH+   + G  P +  +S   L ++ K G LK A  +F E+P R + A+N ++   +
Sbjct: 137 GPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAV 196

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            +G+  E++     L  +G  P+  +      A   C   + L  +LG   H  ++KC  
Sbjct: 197 LDGRPLETIEAYFGLREAGGLPNVVSACAFFNA---CAGAMYL--SLGEQFHGFVVKCGF 251

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-- 240
           + D  +  ++VD Y K      AR VFD M  +N +   SM++ +   G  E+A   +  
Sbjct: 252 EMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLG 311

Query: 241 -RKTVEK--DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
            R++ E+  D +V +A+     +      +AL  H   +++    ++ + SALVDMY KC
Sbjct: 312 ARRSGEEPTDFMVSSALTTCAGLLGLHLGRAL--HAVAVRSCIDANIFVASALVDMYGKC 369

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC-MMQECCVQPNYVTFLGA 356
           G ++DA ++F    Q+N+ TW +MI GY   G+   AL +F  M++     PNY+T +  
Sbjct: 370 GCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNV 429

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           +++C   GL   G E+FE+M   + ++P+ EHYAC+VDLLGRAG  EQA + +  MP +P
Sbjct: 430 ITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRP 489

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
           +  VW ALL +C++H   E+  IAA ++F+L+  D  G +V LSN  A+AG+W   T++R
Sbjct: 490 SISVWGALLGACKMHGKTELGRIAAEKLFELDPQDS-GNHVLLSNMFASAGRWAEATDIR 548

Query: 477 EKMKLRGVLKDTGCSWV 493
           ++MK  G+ KD GCSWV
Sbjct: 549 KEMKNVGIKKDPGCSWV 565



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 105/449 (23%), Positives = 190/449 (42%), Gaps = 28/449 (6%)

Query: 48  LPSALQHYINSDTPFYGLKIHAHITKTGVKPNTN--ISIKLLILHLKCGALKYAGQMFDE 105
           L +A +  I S +P  G   HA   +  + P  +  I   L+ L+ K      A      
Sbjct: 18  LAAAFESAIASRSPRLGRAAHARALRL-IAPALSPFICAHLVNLYSKLDLPAAAAAALAS 76

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
            P  T+ +Y   I+G  ++G+   +LS    ++  G RP+ +TF    KA+    ++ P 
Sbjct: 77  DPHPTVVSYTAFISGAAQHGRPLPALSAFAGMLRLGLRPNDFTFPSAFKAA----ASAPP 132

Query: 166 PRNLGRMVHAQILKCD-VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
              +G  +H+  ++   +  D  +  A +D Y K G+   AR +F  M  +NV+   +++
Sbjct: 133 RSTIGPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVM 192

Query: 225 SGFMSQGF-VEDAEEIFR-------KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLI 276
           +  +  G  +E  E  F          V      +NA      +S+       + H  ++
Sbjct: 193 TNAVLDGRPLETIEAYFGLREAGGLPNVVSACAFFNACAGAMYLSLGE-----QFHGFVV 247

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           K  F  DV + +++VD Y KC     AR VFD M  +N  +W SM+  Y +NG   +A  
Sbjct: 248 KCGFEMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFA 307

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
            +   +    +P       AL+ C     +  GR +     R   +   +   + +VD+ 
Sbjct: 308 AYLGARRSGEEPTDFMVSSALTTCAGLLGLHLGRALHAVAVRS-CIDANIFVASALVDMY 366

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456
           G+ G +E A +   E P++ N   W A++       D + A +  +++ +  + +    Y
Sbjct: 367 GKCGCVEDAEQIFYETPQR-NLVTWNAMIGGYAHIGDAQNALLVFDDMIR--SGETAPNY 423

Query: 457 VALSNTLAA---AGKWDSVTELREKMKLR 482
           + L N + +    G      EL E M+ R
Sbjct: 424 ITLVNVITSCSRGGLTKDGYELFETMRER 452


>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Glycine max]
          Length = 849

 Score =  261 bits (668), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 152/434 (35%), Positives = 248/434 (57%), Gaps = 12/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA+  K  +  +  +   L+ ++ KC +L  A ++FD +    + +YN MI GY +
Sbjct: 375 GRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSR 434

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
             ++ E+L L R++  S   P   TF  +L  S+         +     +H  I+K  V 
Sbjct: 435 QDKLVEALDLFREMRLSLSPPTLLTFVSLLGLSSSLFLLELSSQ-----IHCLIIKFGVS 489

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR-- 241
            D    +AL+D Y K      AR+VF+ + +++++   +M SG+  Q   E++ ++++  
Sbjct: 490 LDSFAGSALIDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQLENEESLKLYKDL 549

Query: 242 --KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               ++ +   + A+I   S +I + R   + H Q+IK    +D  + ++LVDMYAKCG 
Sbjct: 550 QMSRLKPNEFTFAAVIAAAS-NIASLRHGQQFHNQVIKMGLDDDPFVTNSLVDMYAKCGS 608

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I+++ + F    Q+++  W SMI  Y ++G+  +ALE+F  M    V+PNYVTF+G LSA
Sbjct: 609 IEESHKAFSSTNQRDIACWNSMISTYAQHGDAAKALEVFERMIMEGVKPNYVTFVGLLSA 668

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C HAGL+D G   FESM + + ++P ++HYACMV LLGRAG + +A +FV +MP KP + 
Sbjct: 669 CSHAGLLDLGFHHFESMSK-FGIEPGIDHYACMVSLLGRAGKIYEAKEFVKKMPIKPAAV 727

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW +LLS+CR+   VE+   AA      +  D  G+Y+ LSN  A+ G W SV  +REKM
Sbjct: 728 VWRSLLSACRVSGHVELGTYAAEMAISCDPAD-SGSYILLSNIFASKGMWASVRMVREKM 786

Query: 480 KLRGVLKDTGCSWV 493
            +  V+K+ G SW+
Sbjct: 787 DMSRVVKEPGWSWI 800



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 96/378 (25%), Positives = 194/378 (51%), Gaps = 12/378 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH ++ + G   + ++   ++  +LKC  +K   ++F+ L  + + ++  MIAG ++
Sbjct: 274 GKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQ 333

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N    +++ L  ++V  G +PD +  + +L +   C S   L +  GR VHA  +K ++ 
Sbjct: 334 NSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNS---CGSLQALQK--GRQVHAYAIKVNID 388

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK- 242
            DD +   L+D Y K    + AR VFD++   NV+   +MI G+  Q  + +A ++FR+ 
Sbjct: 389 NDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREM 448

Query: 243 --TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
             ++    ++    + G S S+     + ++HC +IK     D   GSAL+D+Y+KC  +
Sbjct: 449 RLSLSPPTLLTFVSLLGLSSSLFLLELSSQIHCLIIKFGVSLDSFAGSALIDVYSKCSCV 508

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
            DAR VF+ +  +++  W +M  GY +     ++L+L+  +Q   ++PN  TF   ++A 
Sbjct: 509 GDARLVFEEIYDRDIVVWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAA 568

Query: 361 GHAGLVDKGREIF-ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
            +   +  G++   + ++      P + +   +VD+  + GS+E++ K       + +  
Sbjct: 569 SNIASLRHGQQFHNQVIKMGLDDDPFVTN--SLVDMYAKCGSIEESHK-AFSSTNQRDIA 625

Query: 420 VWAALLSSCRLHDDVEMA 437
            W +++S+   H D   A
Sbjct: 626 CWNSMISTYAQHGDAAKA 643



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 106/392 (27%), Positives = 188/392 (47%), Gaps = 24/392 (6%)

Query: 29  FPPKLQNYDS--LSNPLTATSLPSALQ-HYINSDTPFYGLKIHAHITKTGVKPNTNISIK 85
            PP LQ +DS  L        L   LQ    N  T  Y  KIHAHI   G   +    + 
Sbjct: 32  LPPFLQPHDSPILIQRKIGRELGKLLQLPSPNILTSHYYKKIHAHIVVLGFHQHDVFLVN 91

Query: 86  -LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG-QVEESLSLVRKLVSSGER 143
            LL  + K      A ++FD +P R L  ++ M++ Y ++G  VE  L   R + S  E+
Sbjct: 92  TLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFCRFMRSCSEK 151

Query: 144 PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTS 203
           P+ Y  + +++A   C     L + L   +H  ++K     D  + T+L+D Y K G   
Sbjct: 152 PNEYILASVVRA---CTQLGNLSQAL--QLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVD 206

Query: 204 YARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYS 259
            AR++FD +  K  +  T++I+G+   G  E + ++F +  E D+     V ++++   S
Sbjct: 207 EARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACS 266

Query: 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWT 319
           + +E      ++H  +++  F  DV + + ++D Y KC K+   R++F+ +  K+V +WT
Sbjct: 267 M-LEFLEGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWT 325

Query: 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD 379
           +MI G  +N     A++LF  M     +P+       L++CG    + KGR++       
Sbjct: 326 TMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQV-----HA 380

Query: 380 YSMKPKMEH----YACMVDLLGRAGSLEQALK 407
           Y++K  +++       ++D+  +  SL  A K
Sbjct: 381 YAIKVNIDNDDFVKNGLIDMYAKCDSLTNARK 412



 Score =  131 bits (330), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 184/395 (46%), Gaps = 22/395 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
            L++H  + K G   +  +   L+  + K G +  A  +FD L  +T   +  +IAGY K
Sbjct: 173 ALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAK 232

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G+ E SL L  ++      PD Y  S +L A +            G+ +H  +L+    
Sbjct: 233 LGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEF-----LEGGKQIHGYVLRRGFD 287

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +   ++D Y+K  K    R +F+ +++K+V+  T+MI+G M   F  DA ++F + 
Sbjct: 288 MDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEM 347

Query: 244 VEK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           V K    D     +++     S++  +K  +VH   IK     D  + + L+DMYAKC  
Sbjct: 348 VRKGWKPDAFGCTSVLNSCG-SLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDS 406

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           + +AR+VFD +   NV ++ +MI+GY +     +AL+LF  M+     P  +TF+  L  
Sbjct: 407 LTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFVSLLGL 466

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
                L++   +I   +   + +       + ++D+  +   +  A + V E     +  
Sbjct: 467 SSSLFLLELSSQI-HCLIIKFGVSLDSFAGSALIDVYSKCSCVGDA-RLVFEEIYDRDIV 524

Query: 420 VWAALLS----------SCRLHDDVEMANIAANEI 444
           VW A+ S          S +L+ D++M+ +  NE 
Sbjct: 525 VWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEF 559


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  261 bits (668), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 147/434 (33%), Positives = 247/434 (56%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH    KTG + +  +S  L+ ++ K G L  A ++ + L  + + ++  MIAGY++
Sbjct: 364 GEQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQ 423

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +   +E+L   + +   G  PD    +  + A     + +   R  G+ +H+++      
Sbjct: 424 HEFCKEALETFKDMQLFGIWPDNIGLASAISAC----AGIKAMRQ-GQQIHSRVYVSGYS 478

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           AD  ++ ALV+ Y + G++  A  +F+ +  K+ I    M+SGF   G  E+A E+F K 
Sbjct: 479 ADVSIWNALVNLYARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKM 538

Query: 244 VEKDIVVYNAMIEGYSIS----IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            +   V YN      SIS    +   ++  ++H  +IK     + ++ +AL+ +Y KCG 
Sbjct: 539 YQAG-VKYNVFTFVSSISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGS 597

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I+DA+  F  M ++N  +W ++I    ++G   +AL+LF  M++  ++PN VTF+G L+A
Sbjct: 598 IEDAKMQFFEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAA 657

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H GLV++G   F+SM  ++ + P+ +HYAC+VD+LGRAG L++A KFV EMP   N+ 
Sbjct: 658 CSHVGLVEEGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAM 717

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW  LLS+CR+H ++E+  +AA  + +L  +D   +YV LSN  A  GKW     +R+ M
Sbjct: 718 VWRTLLSACRVHKNIEIGELAAKYLLELEPHD-SASYVLLSNAYAVTGKWACRDHVRKMM 776

Query: 480 KLRGVLKDTGCSWV 493
           K RGV K+ G SW+
Sbjct: 777 KDRGVRKEPGRSWI 790



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 101/376 (26%), Positives = 201/376 (53%), Gaps = 20/376 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H+++ K G+ P+  I   LL L++KCG +  A ++F    +  +  +N M+  Y +
Sbjct: 263 GKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQ 322

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
              + +S  L  ++V++G RP+ +T+  +L+  TC  +      NLG  +H   +K   +
Sbjct: 323 ISDLAKSFDLFCQMVAAGVRPNEFTYPCLLR--TCTYAG---EINLGEQIHLLSIKTGFE 377

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +D  +   L+D Y K G    AR + +++  K+V+  TSMI+G++   F ++A E F   
Sbjct: 378 SDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETF--- 434

Query: 244 VEKDIVVYNAMIEGYSIS--------IETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
             KD+ ++    +   ++        I+  R+  ++H ++  + +  DV + +ALV++YA
Sbjct: 435 --KDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYSADVSIWNALVNLYA 492

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           +CG+  +A  +F+ ++ K+  TW  M+ G+ ++G   +ALE+F  M +  V+ N  TF+ 
Sbjct: 493 RCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVS 552

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
           ++SA  +   + +G++I  ++ +      + E    ++ L G+ GS+E A     EM E+
Sbjct: 553 SISASANLADIKQGKQIHATVIKT-GCTSETEVANALISLYGKCGSIEDAKMQFFEMSER 611

Query: 416 PNSDVWAALLSSCRLH 431
            N   W  +++SC  H
Sbjct: 612 -NHVSWNTIITSCSQH 626



 Score =  134 bits (338), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 101/370 (27%), Positives = 180/370 (48%), Gaps = 12/370 (3%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           IHA     G+  +      L+ L+ K G ++ A ++F++L  R   ++  M++GY +NG 
Sbjct: 64  IHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGL 123

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
            EE++ L  ++  SG  P  Y  S +L  S C ++ +      GR+VHAQ+ K    ++ 
Sbjct: 124 GEEAVGLYHQMHCSGVVPTPYVLSSVL--SACTKAAL---FEQGRLVHAQVYKQGSCSET 178

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT--- 243
           V+  AL+  Y++ G  S A  VF  M   + +   ++IS     G  E A EIF +    
Sbjct: 179 VVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLS 238

Query: 244 -VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
               D V   +++   + SI    K  ++H  L+K     D  +  +L+D+Y KCG I +
Sbjct: 239 GWTPDCVTIASLLAACA-SIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVE 297

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           A  +F    + NV  W  M+  YG+  +  ++ +LFC M    V+PN  T+   L  C +
Sbjct: 298 ALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTY 357

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
           AG ++ G +I   +      +  M     ++D+  + G L++A + +LE+ E  +   W 
Sbjct: 358 AGEINLGEQI-HLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARR-ILEVLEAKDVVSWT 415

Query: 423 ALLSSCRLHD 432
           ++++    H+
Sbjct: 416 SMIAGYVQHE 425



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 178/368 (48%), Gaps = 14/368 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +HA + K G    T +   L+ L+L+ G+L  A ++F E+P      +N +I+ + +
Sbjct: 162 GRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQ 221

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G  E +L +  ++  SG  PD  T + +L A   C S   L  N G+ +H+ +LK  + 
Sbjct: 222 CGNGESALEIFEEMRLSGWTPDCVTIASLLAA---CASIGDL--NKGKQLHSYLLKAGMS 276

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D ++  +L+D YVK G    A  +F      NV+    M+  +     +  + ++F + 
Sbjct: 277 PDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQM 336

Query: 244 VEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           V   +      Y  ++   + + E      ++H   IK  F  D+ +   L+DMY+K G 
Sbjct: 337 VAAGVRPNEFTYPCLLRTCTYAGEI-NLGEQIHLLSIKTGFESDMYVSGVLIDMYSKYGW 395

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +D ARR+ + ++ K+V +WTSMI GY ++    +ALE F  MQ   + P+ +    A+SA
Sbjct: 396 LDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISA 455

Query: 360 CGHAGLVDKGREIFESME-RDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           C     + +G++I   +    YS    +  +  +V+L  R G  ++A   + E  E  + 
Sbjct: 456 CAGIKAMRQGQQIHSRVYVSGYSADVSI--WNALVNLYARCGRSKEAFS-LFEAIEHKDK 512

Query: 419 DVWAALLS 426
             W  ++S
Sbjct: 513 ITWNGMVS 520



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 81/324 (25%), Positives = 151/324 (46%), Gaps = 11/324 (3%)

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           + +R  ++ N  + G+L +   E+ LSL    V          F+  L+    CR +V  
Sbjct: 1   MTRRAAASLNKSLTGFLAHEDPEKLLSLFAAKVRQCRGLGSVDFACALRE---CRGSVK- 56

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
              L  ++HA+ + C +  D +    L+D Y K G    AR VF+ +  ++ +   +M+S
Sbjct: 57  HWPLVPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLS 116

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFF 281
           G+   G  E+A  ++ + +    VV    +    +S  T     E    VH Q+ K    
Sbjct: 117 GYARNGLGEEAVGLYHQ-MHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSC 175

Query: 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM 341
            +  +G+AL+ +Y + G +  A RVF  M   +  T+ ++I  + + GN   ALE+F  M
Sbjct: 176 SETVVGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEM 235

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGS 401
           +     P+ VT    L+AC   G ++KG+++   + +   M P       ++DL  + G 
Sbjct: 236 RLSGWTPDCVTIASLLAACASIGDLNKGKQLHSYLLKA-GMSPDYIIEGSLLDLYVKCGV 294

Query: 402 LEQALKFVLEMPEKPNSDVWAALL 425
           + +AL+ + +  ++ N  +W  +L
Sbjct: 295 IVEALE-IFKSGDRTNVVLWNLML 317


>gi|297738034|emb|CBI27235.3| unnamed protein product [Vitis vinifera]
          Length = 696

 Score =  261 bits (668), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 164/509 (32%), Positives = 269/509 (52%), Gaps = 27/509 (5%)

Query: 5   SRIRSSVFSSTHNRHYTLV-----PPNQTFPPKLQNYDSLSNPLTATSLPSALQH--YIN 57
           SR RS+ F    + +  +      P N  FP  L+    L +  T   + +A     Y +
Sbjct: 66  SRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGEQIHAAAVKFGYGS 125

Query: 58  SDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYM 117
           S        ++ +    G+   T  +  L+ ++ K G +  +  +F+    R + ++N M
Sbjct: 126 SSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTM 185

Query: 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR-NLGRMVHAQ 176
           I+ + ++ +  E+L+  R +V  G   DG T + +L A +       L R ++G+ +HA 
Sbjct: 186 ISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACS------HLERLDVGKEIHAY 239

Query: 177 ILKC-DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
           +L+  D+  +  + +ALVD Y    +    R VFD +L + +    +MISG+   G  E 
Sbjct: 240 VLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEK 299

Query: 236 AEEIFRKTVEKDIVVYN-----AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSAL 290
           A  +F + ++   ++ N     +++     S+    K  E+H   I+N+   D+ +GSAL
Sbjct: 300 ALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIRNMLASDITVGSAL 359

Query: 291 VDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF-CMMQECC---- 345
           VDMYAKCG ++ +RRVF+ M  KNV TW  +I   G +G   +ALELF  M+ E      
Sbjct: 360 VDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALELFKNMVAEAGRGGE 419

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
            +PN VTF+   +AC H+GL+ +G  +F  M+ D+ ++P  +HYAC+VDLLGRAG LE+A
Sbjct: 420 AKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEA 479

Query: 406 LKFVLEMP-EKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464
            + V  MP E      W++LL +CR+H +VE+  +AA  +  L  N     YV LSN  +
Sbjct: 480 YELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPN-VASHYVLLSNIYS 538

Query: 465 AAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           +AG W+   E+R+ M+  GV K+ GCSW+
Sbjct: 539 SAGLWNKAMEVRKNMRQMGVKKEPGCSWI 567



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 169/368 (45%), Gaps = 40/368 (10%)

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P R+ +++   +    ++    E++S   ++  SG RPD + F  +LKA +  +      
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQD----- 107

Query: 167 RNLGRMVHAQIL--------------------KCDVKADDVLY-TALVDSYVKGGKTSYA 205
              G  +HA  +                    KC    D      AL+  Y K G+   +
Sbjct: 108 LKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDKTFTNNALMAMYAKLGRVDDS 167

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR----KTVEKDIVVYNAMIEGYSIS 261
           + +F+  ++++++   +MIS F       +A   FR    + VE D V   +++   S  
Sbjct: 168 KALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACS-H 226

Query: 262 IETARKALEVHCQLIKNV-FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
           +E      E+H  +++N    E+  +GSALVDMY  C +++  RRVFDH+  + +  W +
Sbjct: 227 LERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNA 286

Query: 321 MIDGYGKNGNPNQALELFC-MMQECCVQPNYVTFLGALSACGHA-GLVDKGREIFESMER 378
           MI GY +NG   +AL LF  M++   + PN  T    + AC H+   + KG+EI     R
Sbjct: 287 MISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHSLAAIAKGKEIHAYAIR 346

Query: 379 DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMAN 438
           +  +   +   + +VD+  + G L  + +   EMP K N   W  L+ +C +H   E   
Sbjct: 347 NM-LASDITVGSALVDMYAKCGCLNLSRRVFNEMPNK-NVITWNVLIMACGMHGKGE--- 401

Query: 439 IAANEIFK 446
             A E+FK
Sbjct: 402 -EALELFK 408


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  261 bits (667), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 156/447 (34%), Positives = 250/447 (55%), Gaps = 23/447 (5%)

Query: 64  GLKIHAHITKTG-VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G ++HA+  K G +  N+ +   L+ ++  C  +    ++FD +  R +  +N MIAGY 
Sbjct: 321 GKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYS 380

Query: 123 KNGQVEESLSLVRKLV-SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           +N   +E+L L   +  S+G   +  T + ++ A  C RS     R     +H  ++K  
Sbjct: 381 QNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA--CVRSGA-FSRK--EAIHGFVVKRG 435

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +  D  +   L+D Y + GK   A  +F  M +++++   +MI+G++     EDA  +  
Sbjct: 436 LDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLH 495

Query: 242 K--TVEKDIV--VYNAMIEGYSISIETA----------RKALEVHCQLIKNVFFEDVKLG 287
           K   +E+ +        ++  SI++ T            K  E+H   IKN    DV +G
Sbjct: 496 KMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVG 555

Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347
           SALVDMYAKCG +  +R+VFD + QKNV TW  +I  YG +GN  +A++L  MM    V+
Sbjct: 556 SALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVK 615

Query: 348 PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALK 407
           PN VTF+   +AC H+G+VD+G  IF  M+ DY ++P  +HYAC+VDLLGRAG +++A +
Sbjct: 616 PNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQ 675

Query: 408 FVLEMPEKPN-SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
            +  MP   N +  W++LL + R+H+++E+  IAA  + +L  N     YV L+N  ++A
Sbjct: 676 LMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPN-VASHYVLLANIYSSA 734

Query: 467 GKWDSVTELREKMKLRGVLKDTGCSWV 493
           G WD  TE+R  MK +GV K+ GCSW+
Sbjct: 735 GLWDKATEVRRNMKEQGVRKEPGCSWI 761



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 184/383 (48%), Gaps = 26/383 (6%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNT-NISIKLLILHLKCGALKYAGQMFDE 105
           + P+ L+   +      G +IHAH+ K G   ++  ++  L+ L+ KCG      ++FD 
Sbjct: 99  AFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDR 158

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           + +R   ++N +I+      + E +L   R ++     P  +T   ++   T C SN+P+
Sbjct: 159 ISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVV---TAC-SNLPM 214

Query: 166 PRNL--GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
           P  L  G+ VHA  L+   + +  +   LV  Y K GK + ++++      ++++   ++
Sbjct: 215 PEGLMMGKQVHAYGLR-KGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTV 273

Query: 224 ISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKN- 278
           +S       + +A E  R+     VE D    ++++   S  +E  R   E+H   +KN 
Sbjct: 274 LSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACS-HLEMLRTGKELHAYALKNG 332

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
              E+  +GSALVDMY  C ++   RRVFD M  + +  W +MI GY +N +  +AL LF
Sbjct: 333 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 392

Query: 339 CMMQECC-VQPNYVTFLGALSACGHAGLVDK-----GREIFESMERDYSMKPKMEHYACM 392
             M+E   +  N  T  G + AC  +G   +     G  +   ++RD  ++        +
Sbjct: 393 IGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNT------L 446

Query: 393 VDLLGRAGSLEQALKFVLEMPEK 415
           +D+  R G ++ A++   +M ++
Sbjct: 447 MDMYSRLGKIDIAMRIFGKMEDR 469



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 118/261 (45%), Gaps = 19/261 (7%)

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           +++  + E++     ++  G +PD Y F  +LKA    +        LG+ +HA + K  
Sbjct: 73  VRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQD-----MELGKQIHAHVYKFG 127

Query: 182 VKADDV-LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
              D V +   LV+ Y K G       VFD + E+N +   S+IS   S    E A E F
Sbjct: 128 YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAF 187

Query: 241 RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLI--KNVFFEDVKLG-------SALV 291
           R  +++++   +  +    +S+ TA   L +   L+  K V    ++ G       + LV
Sbjct: 188 RCMLDENVEPSSFTL----VSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLV 243

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
            MY K GK+  ++ +      +++ TW +++    +N    +ALE    M    V+P+  
Sbjct: 244 AMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303

Query: 352 TFLGALSACGHAGLVDKGREI 372
           T    L AC H  ++  G+E+
Sbjct: 304 TISSVLPACSHLEMLRTGKEL 324


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  261 bits (667), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 148/431 (34%), Positives = 242/431 (56%), Gaps = 11/431 (2%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +H +  +   +    I+   +  + KCG+L +A  +F  +  +++S++N +I G+ +NG 
Sbjct: 438 LHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGD 497

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
             ++L    ++   G  PD ++   +L A  C R  +      G+ +H  +L+  ++ + 
Sbjct: 498 PIKALDFYFEMTRLGILPDDFSIVSLLLA--CGRLGL---LQYGKEIHGFVLRNGLEMNS 552

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV-- 244
            +  +L+  Y    K  Y R  F+ M +KN +C  +M+SG+       +A  +FR+ +  
Sbjct: 553 FVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSD 612

Query: 245 --EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
             E D +   A I G    +       EVHC  +KN   ED  +  +L+DMYAK G +  
Sbjct: 613 GLEPDEIAI-ASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGH 671

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           ++R+F+ +  K V +W  MI G+G +G  N+A+ELF  M+    QP+  TFLG L AC H
Sbjct: 672 SQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCH 731

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
           AGLV +G      M+  Y ++P++EHYAC++D+LGRAG L +AL F+ EMPE+P++ +W+
Sbjct: 732 AGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWS 791

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
           +LLSS   + D+EM    A ++  L AN +  +Y+ LSN  A AGKWD V  +R+KMK  
Sbjct: 792 SLLSSSITYVDLEMGEKFAEKLLALEAN-KADSYILLSNLYATAGKWDVVRMVRQKMKDL 850

Query: 483 GVLKDTGCSWV 493
            + KD GCSW+
Sbjct: 851 SLQKDVGCSWI 861



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 162/318 (50%), Gaps = 16/318 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H    K G+  +  +   ++ L+ KCG L  A ++FD++P++ L ++N +I G+ +
Sbjct: 229 GKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSE 288

Query: 124 NGQVEESLSLVRKLVSSGER--PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           NG   E+    R L+ SG+   PD  T   +L   +    NV    ++G ++H   +K  
Sbjct: 289 NGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCS-GEGNV----DVGMVIHGMAVKLG 343

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +  + ++  AL+D Y K G  S A I+F  +  K+V+   SMI  +  +GFV +  ++ R
Sbjct: 344 LVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLR 403

Query: 242 KTVEK-------DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
           K   +       ++ + N +      S   + +AL  H   +++ F     + +A +  Y
Sbjct: 404 KMWMEEELMEVNEVTILNLLPACLEESELLSLRAL--HGYSLRHSFQYKELINNAFIAAY 461

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           AKCG +  A  VF  M  K+V +W ++I G+ +NG+P +AL+ +  M    + P+  + +
Sbjct: 462 AKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIV 521

Query: 355 GALSACGHAGLVDKGREI 372
             L ACG  GL+  G+EI
Sbjct: 522 SLLLACGRLGLLQYGKEI 539



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 147/287 (51%), Gaps = 13/287 (4%)

Query: 82  ISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG 141
           ++ +L+ ++  CG    +  +FD L  + L  +N +++GY++N   +E++    +L+S  
Sbjct: 145 LNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVT 204

Query: 142 E-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGG 200
           E +PD +TF  ++KA   C     +  +LG+ VH   +K  +  D  +  A++  Y K G
Sbjct: 205 EFQPDNFTFPCLIKA---CTGKCDI--HLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCG 259

Query: 201 KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK-DIVVYNAMIEGYS 259
               A  +FD M E+N+I   S+I GF   GF  +A   FR  +E  D ++ +       
Sbjct: 260 FLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTL 319

Query: 260 ISIETARKALEV----HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
           + + +    ++V    H   +K     ++ + +AL+DMY+KCG + +A  +F  ++ K+V
Sbjct: 320 LPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSV 379

Query: 316 FTWTSMIDGYGKNGNPNQALELF--CMMQECCVQPNYVTFLGALSAC 360
            +W SMI  Y + G   +  +L     M+E  ++ N VT L  L AC
Sbjct: 380 VSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 5/185 (2%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           YG +IH  + + G++ N+ +++ LL L+  C    Y    F+ +  +    +N M++GY 
Sbjct: 535 YGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYS 594

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +N    E+LSL R+++S G  PD    + IL A   C     L   LG+ VH   LK  +
Sbjct: 595 QNELPNEALSLFRQMLSDGLEPDEIAIASILGA---CSQLSAL--GLGKEVHCFALKNSL 649

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             D+ +  +L+D Y K G   +++ +F+ +  K V     MI+GF   G    A E+F  
Sbjct: 650 MEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFED 709

Query: 243 TVEKD 247
               D
Sbjct: 710 MKRSD 714



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 117/251 (46%), Gaps = 12/251 (4%)

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
           NV + R L  M+    +      D VL T L+  Y   G    +R+VFD +L KN+    
Sbjct: 122 NVEIGRKLDEML---CVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWN 178

Query: 222 SMISGFMSQGFVEDAEEIFRKTV-----EKDIVVYNAMIEGYSISIETARKALEVHCQLI 276
           +++SG++     ++A   F + +     + D   +  +I+  +   +       VH   +
Sbjct: 179 ALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDI-HLGKSVHGMAV 237

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           K     D+ +G+A++ +Y KCG +D+A  +FD M ++N+ +W S+I G+ +NG   +A  
Sbjct: 238 KMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYR 297

Query: 337 LFCMMQEC--CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394
            F  + E    + P+  T +  L  C   G VD G  +   M     +  ++     ++D
Sbjct: 298 AFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGM-VIHGMAVKLGLVHELMVCNALID 356

Query: 395 LLGRAGSLEQA 405
           +  + G L +A
Sbjct: 357 MYSKCGCLSEA 367



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 78/152 (51%), Gaps = 4/152 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H    K  +  +  ++  L+ ++ K G L ++ ++F+ L  + ++++N MI G+  
Sbjct: 637 GKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGV 696

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +GQ  +++ L   +  S ++PD +TF  +L+A  CC + + +   L  +   Q L   ++
Sbjct: 697 HGQGNKAVELFEDMKRSDKQPDRFTFLGVLQA--CCHAGL-VSEGLNYLAQMQTLY-KLE 752

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
            +   Y  ++D   + G+ + A    + M E+
Sbjct: 753 PELEHYACVIDMLGRAGRLNEALNFINEMPEE 784


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  261 bits (667), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 163/462 (35%), Positives = 244/462 (52%), Gaps = 55/462 (11%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +I  H+   G   +  +S  ++ L + CG L  A +MFD+   R L ++N MI GY++
Sbjct: 98  GSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVR 157

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G   E+L+  R++   G +PD  T  MI   S+C +       +LGR  H  I +  +K
Sbjct: 158 RGWAYEALNFYREMKVEGIKPDEVT--MIGVVSSCAQLE---DLDLGRESHCYIEENGLK 212

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               L  AL+D Y+K G    AR +FD M  K ++  T+M+               F + 
Sbjct: 213 LTVPLANALMDMYMKCGNLESARKLFDSMTNKTMVSWTTML---------------FDEM 257

Query: 244 VEKDIVVYNAMIEGY------------------------------SISIETARKALEV-- 271
            +KD+V +NAMI GY                               +S  +   AL+V  
Sbjct: 258 PDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGI 317

Query: 272 --HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
             H  + K+    +V LG+AL+DMYAKCGKI  A +VF  +  +N  TWT++I G   +G
Sbjct: 318 WIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHG 377

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
           N + A+  F  M +  V P+ VTFLG LSAC H GLV++GR+ F  M   +++ PK++HY
Sbjct: 378 NAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHY 437

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
           +CMVDLLGRAG LE+A + +  MP + ++ VW AL  +CR+H +V M   AA+++ +++ 
Sbjct: 438 SCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDP 497

Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
           +D  G YV L+N    A  W    + R+ M+ RGV K  GCS
Sbjct: 498 HD-SGIYVLLANMYGEAEMWKEAGKXRKLMRQRGVEKTPGCS 538



 Score =  135 bits (340), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 169/346 (48%), Gaps = 29/346 (8%)

Query: 113 AYNYMIAGYLKNGQVEESLSLVRKLVS-SGERPDGYTFSMILKASTCCRSNVPLPRNLGR 171
           ++N  I G+L +    E++ L ++++   G +PD YT+ ++ KA  C R  + L R +G 
Sbjct: 45  SWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKA--CAR--LSLIR-MGS 99

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
            +   +L     +D  +  A++   V  G    AR +FD    ++++   SMI+G++ +G
Sbjct: 100 EILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRG 159

Query: 232 FVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG 287
           +  +A   +R+     ++ D V    ++   +  +E      E HC + +N     V L 
Sbjct: 160 WAYEALNFYREMKVEGIKPDEVTMIGVVSSCA-QLEDLDLGRESHCYIEENGLKLTVPLA 218

Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS----------------MIDGYGKNGNP 331
           +AL+DMY KCG ++ AR++FD M  K + +WT+                MI GY      
Sbjct: 219 NALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRG 278

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC 391
            +AL LF  MQ   + P+ VT +  LSAC   G +D G  I   +E+ + +   +     
Sbjct: 279 KEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEK-HELSLNVALGTA 337

Query: 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           ++D+  + G + +A++   E+P + NS  W A++S   LH +   A
Sbjct: 338 LIDMYAKCGKITKAIQVFQELPGR-NSLTWTAIISGLALHGNAHGA 382



 Score = 38.5 bits (88), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 38/172 (22%), Positives = 66/172 (38%), Gaps = 34/172 (19%)

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC-CVQPNYVTFLGALS 358
           +D    +  + +  N F+W   I G+  + NP +A+ L+  + +C   +P+  T+     
Sbjct: 28  LDYCTNILFNTRNPNTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFK 87

Query: 359 ACGHAGLVDKGREIFESMER---------------------DYSMKPKMEHYACMVDLLG 397
           AC    L+  G EI   +                       D     KM   +C+ DL+ 
Sbjct: 88  ACARLSLIRMGSEILGHVLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVS 147

Query: 398 ---------RAGSLEQALKFVLEMPE---KPNSDVWAALLSSCRLHDDVEMA 437
                    R G   +AL F  EM     KP+      ++SSC   +D+++ 
Sbjct: 148 WNSMINGYVRRGWAYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLG 199


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  261 bits (667), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 141/440 (32%), Positives = 248/440 (56%), Gaps = 11/440 (2%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           F G ++H    K+G   +  ++  +L L+ KC AL  A  +F  + Q+   ++N +IA  
Sbjct: 410 FQGQQVHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAAL 469

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            +NG  ++++    +++  G +PD +T+  +LKA    RS        G MVH +++K  
Sbjct: 470 EQNGHYDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRS-----LEYGLMVHDKVIKSG 524

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           + +D  + + +VD Y K G    A+ + D +  + V+   +++SGF      E+A++ F 
Sbjct: 525 LGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFS 584

Query: 242 KTVE----KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           + ++     D   +  +++  + ++ T     ++H Q+IK    +D  + S LVDMYAKC
Sbjct: 585 EMLDMGLKPDHFTFATVLDTCA-NLATIELGKQIHGQIIKQEMLDDEYISSTLVDMYAKC 643

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G + D+  VF+ +++++  +W +MI GY  +G   +AL +F  MQ+  V PN+ TF+  L
Sbjct: 644 GDMPDSLLVFEKVEKRDFVSWNAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVL 703

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            AC H GL D G   F  M   Y ++P++EH+ACMVD+LGR+   ++A+KF+  MP + +
Sbjct: 704 RACSHVGLFDDGCRYFHLMTTHYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQAD 763

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
           + +W  LLS C++  DVE+A +AA+ +  L+ +D    Y+ LSN  A +GKW  V+  R 
Sbjct: 764 AVIWKTLLSICKIRQDVEIAELAASNVLLLDPDD-SSVYILLSNVYAESGKWADVSRTRR 822

Query: 478 KMKLRGVLKDTGCSWVGTES 497
            +K   + K+ GCSW+  +S
Sbjct: 823 LLKQGRLKKEPGCSWIEVQS 842



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 176/372 (47%), Gaps = 12/372 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HAH  K     +  +   ++ ++ K  +L  A + F  LP  T+   N M+ G ++
Sbjct: 311 GRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVR 370

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G   E++ L + ++ S  R D  + S +   S C  +        G+ VH   +K    
Sbjct: 371 AGLGIEAMGLFQFMIRSSIRFDVVSLSGVF--SACAETKGYFQ---GQQVHCLAIKSGFD 425

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEI 239
            D  +  A++D Y K      A ++F  M +K+ +   ++I+     G  +D      E+
Sbjct: 426 VDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEM 485

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            R  ++ D   Y ++++  + ++ +    L VH ++IK+    D  + S +VDMY KCG 
Sbjct: 486 LRFGMKPDDFTYGSVLKACA-ALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGI 544

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ID+A+++ D +  + V +W +++ G+  N    +A + F  M +  ++P++ TF   L  
Sbjct: 545 IDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDT 604

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C +   ++ G++I   + +   +  +    + +VD+  + G +  +L  V E  EK +  
Sbjct: 605 CANLATIELGKQIHGQIIKQEMLDDEYIS-STLVDMYAKCGDMPDSL-LVFEKVEKRDFV 662

Query: 420 VWAALLSSCRLH 431
            W A++    LH
Sbjct: 663 SWNAMICGYALH 674



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 111/460 (24%), Positives = 196/460 (42%), Gaps = 51/460 (11%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+++HA   KTG++ +      L+ ++ KC +L  A   F  +P+R   ++   IAG ++
Sbjct: 210 GVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPERNWVSWGAAIAGCVQ 269

Query: 124 NGQVEESLSLVRKL--VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           N Q    L L  ++  +  G     Y  +    A+  C        N GR +HA  +K  
Sbjct: 270 NEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSC-------LNTGRQLHAHAIKNK 322

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF- 240
             +D V+ TA+VD Y K    + AR  F  +    V  S +M+ G +  G   +A  +F 
Sbjct: 323 FSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGLVRAGLGIEAMGLFQ 382

Query: 241 ---RKTVEKDIVVYNAMIEGYSISIETAR--KALEVHCQLIKNVFFEDVKLGSALVDMYA 295
              R ++  D+V  + +   +S   ET    +  +VHC  IK+ F  D+ + +A++D+Y 
Sbjct: 383 FMIRSSIRFDVVSLSGV---FSACAETKGYFQGQQVHCLAIKSGFDVDICVNNAVLDLYG 439

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KC  + +A  +F  M+QK+  +W ++I    +NG+ +  +  F  M    ++P+  T+  
Sbjct: 440 KCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLRFGMKPDDFTYGS 499

Query: 356 ALSACG-----HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL-------- 402
            L AC        GL+   + I   +  D  +   +    C   ++  A  L        
Sbjct: 500 VLKACAALRSLEYGLMVHDKVIKSGLGSDAFVASTVVDMYCKCGIIDEAQKLHDRIGGQQ 559

Query: 403 -----------------EQALKF---VLEMPEKPNSDVWAALLSSCRLHDDVEMANIAAN 442
                            E+A KF   +L+M  KP+   +A +L +C     +E+      
Sbjct: 560 VVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCANLATIELGKQIHG 619

Query: 443 EIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
           +I K    D       L +  A  G       + EK++ R
Sbjct: 620 QIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKR 659



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 174/388 (44%), Gaps = 20/388 (5%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           +L  +   G +  A  +FD +P   + ++N +++GY + G  +ES+ L  ++   G  PD
Sbjct: 131 MLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPD 190

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
             TF+++LK+ +          +LG  VHA  +K  ++ D    +ALVD Y K      A
Sbjct: 191 RTTFAVLLKSCSALEE-----LSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDA 245

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV----YNAMIEGYSIS 261
              F  M E+N +   + I+G +         E+F +     + V    Y +     + +
Sbjct: 246 LCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCA-A 304

Query: 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
           +       ++H   IKN F  D  +G+A+VD+YAK   + DARR F  +    V T  +M
Sbjct: 305 MSCLNTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAM 364

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           + G  + G   +A+ LF  M    ++ + V+  G  SAC       +G+++        +
Sbjct: 365 MVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQV-----HCLA 419

Query: 382 MKPKMEHYAC----MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           +K   +   C    ++DL G+  +L +A      M +K +S  W A++++   +   +  
Sbjct: 420 IKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQK-DSVSWNAIIAALEQNGHYDDT 478

Query: 438 NIAANEIFKLNANDRPGAYVALSNTLAA 465
            +  NE+ +         Y ++    AA
Sbjct: 479 ILHFNEMLRFGMKPDDFTYGSVLKACAA 506



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 62/235 (26%), Positives = 117/235 (49%), Gaps = 6/235 (2%)

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-- 240
           + D V +  ++ +Y   G  S A  +FD M + +V+   +++SG+  +G  +++ ++F  
Sbjct: 122 RRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVE 181

Query: 241 --RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
             R+ V  D   +  +++  S ++E     ++VH   +K     DV+ GSALVDMY KC 
Sbjct: 182 MARRGVSPDRTTFAVLLKSCS-ALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCR 240

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            +DDA   F  M ++N  +W + I G  +N    + LELF  MQ   +  +  ++  A  
Sbjct: 241 SLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFR 300

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           +C     ++ GR++     ++     ++   A +VD+  +A SL  A +    +P
Sbjct: 301 SCAAMSCLNTGRQLHAHAIKNKFSSDRVVGTA-IVDVYAKANSLTDARRAFFGLP 354



 Score = 47.0 bits (110), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 43/186 (23%), Positives = 81/186 (43%), Gaps = 33/186 (17%)

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-------------------- 313
           +++ + F     + + L+ MYA+C     ARRVFD M ++                    
Sbjct: 84  RMVVSGFVPTAFVSNCLLQMYARCAGAACARRVFDAMPRRDTVSWNTMLTAYSHAGDIST 143

Query: 314 -----------NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
                      +V +W +++ GY + G   ++++LF  M    V P+  TF   L +C  
Sbjct: 144 AVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFVEMARRGVSPDRTTFAVLLKSCSA 203

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
              +  G ++  ++     ++  +   + +VD+ G+  SL+ AL F   MPE+ N   W 
Sbjct: 204 LEELSLGVQV-HALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCFFYGMPER-NWVSWG 261

Query: 423 ALLSSC 428
           A ++ C
Sbjct: 262 AAIAGC 267


>gi|297741507|emb|CBI32639.3| unnamed protein product [Vitis vinifera]
          Length = 459

 Score =  261 bits (667), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 159/438 (36%), Positives = 251/438 (57%), Gaps = 19/438 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +HA   KTG    T     L+ ++ K G L  + ++F+E+  + +  +N M++ +++
Sbjct: 20  GNAVHALAIKTGSDTPTVTKTALMDMYSKYGQLGSSVRVFEEVGFKDVVTWNTMLSSFVR 79

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G+ EE+L++ R++   G     +T   +LKA T  ++        G+ VHA ++   V 
Sbjct: 80  HGRPEEALAVFREMQKEGVWLSEFTLCSLLKACTLLKA-----FQQGKQVHALVV---VM 131

Query: 184 ADD--VLYTALVDSYVKGGKTSYARIVF-DMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
             D  VL TAL+D Y        A  +F ++  +K+ +   S+ISG +     ++A  I 
Sbjct: 132 GRDLVVLGTALIDFYTNVECIGEAMEIFHNLNWKKDDVMRNSLISGCVRNRRYKEAFLIM 191

Query: 241 RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
                  + V +A+      S     K  ++HC  ++  F  D +L + L+DMYAKCGKI
Sbjct: 192 SAMRPNVVAVTSALAACSKNSDLWVGK--QIHCVAMRFGFTFDTQLCNVLLDMYAKCGKI 249

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM--QECCVQPNYVTFLGALS 358
            +AR +FD M +K+V +WTSMID YG +G+  +AL+LF  M  +   + PN VTFL  LS
Sbjct: 250 LNARSLFDRMDKKDVVSWTSMIDAYGNHGHGLEALKLFKKMEGEGNSILPNLVTFLAVLS 309

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---K 415
           AC H+G+V++G+E F  +++ YS+ P  EHYAC +D+LGRAG +E+  +    M +   K
Sbjct: 310 ACAHSGMVEQGQECFNLIQKKYSLDPGPEHYACFIDILGRAGQIEEVWRLFNNMIKNQTK 369

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
           P + VWAA+L++C  + DV     AA  + +L  N +PG YV LSN  AA G+WDSV EL
Sbjct: 370 PTAAVWAAILNACSHNLDVSRGEFAAKNLLELEPN-KPGNYVLLSNFYAAVGRWDSVNEL 428

Query: 476 REKMKLRGVLKDTGCSWV 493
           R  M+ +G++K+TG SWV
Sbjct: 429 RSIMRKKGLVKETGNSWV 446



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/227 (24%), Positives = 101/227 (44%), Gaps = 22/227 (9%)

Query: 245 EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDAR 304
            +D+   N++I  +       R    VH   IK          +AL+DMY+K G++  + 
Sbjct: 3   HRDLYTLNSLIASH------VRSGNAVHALAIKTGSDTPTVTKTALMDMYSKYGQLGSSV 56

Query: 305 RVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG 364
           RVF+ +  K+V TW +M+  + ++G P +AL +F  MQ+  V  +  T    L AC    
Sbjct: 57  RVFEEVGFKDVVTWNTMLSSFVRHGRPEEALAVFREMQKEGVWLSEFTLCSLLKACTLLK 116

Query: 365 LVDKGREIFE---SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
              +G+++      M RD  +         ++D       + +A++    +  K +  + 
Sbjct: 117 AFQQGKQVHALVVVMGRDLVVLG-----TALIDFYTNVECIGEAMEIFHNLNWKKDDVMR 171

Query: 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGK 468
            +L+S C       + N    E F + +  RP   VA+++ LAA  K
Sbjct: 172 NSLISGC-------VRNRRYKEAFLIMSAMRPNV-VAVTSALAACSK 210



 Score = 46.6 bits (109), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 51/101 (50%), Gaps = 3/101 (2%)

Query: 57  NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNY 116
           NSD  + G +IH    + G   +T +   LL ++ KCG +  A  +FD + ++ + ++  
Sbjct: 211 NSDL-WVGKQIHCVAMRFGFTFDTQLCNVLLDMYAKCGKILNARSLFDRMDKKDVVSWTS 269

Query: 117 MIAGYLKNGQVEESLSLVRKLVSSGER--PDGYTFSMILKA 155
           MI  Y  +G   E+L L +K+   G    P+  TF  +L A
Sbjct: 270 MIDAYGNHGHGLEALKLFKKMEGEGNSILPNLVTFLAVLSA 310


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  261 bits (667), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 156/447 (34%), Positives = 250/447 (55%), Gaps = 23/447 (5%)

Query: 64  GLKIHAHITKTG-VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G ++HA+  K G +  N+ +   L+ ++  C  +    ++FD +  R +  +N MIAGY 
Sbjct: 321 GKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYS 380

Query: 123 KNGQVEESLSLVRKLV-SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           +N   +E+L L   +  S+G   +  T + ++ A  C RS     R     +H  ++K  
Sbjct: 381 QNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA--CVRSGA-FSRK--EAIHGFVVKRG 435

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +  D  +   L+D Y + GK   A  +F  M +++++   +MI+G++     EDA  +  
Sbjct: 436 LDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLH 495

Query: 242 K--TVEKDIV--VYNAMIEGYSISIETA----------RKALEVHCQLIKNVFFEDVKLG 287
           K   +E+ +        ++  SI++ T            K  E+H   IKN    DV +G
Sbjct: 496 KMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVG 555

Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347
           SALVDMYAKCG +  +R+VFD + QKNV TW  +I  YG +GN  +A++L  MM    V+
Sbjct: 556 SALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVK 615

Query: 348 PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALK 407
           PN VTF+   +AC H+G+VD+G  IF  M+ DY ++P  +HYAC+VDLLGRAG +++A +
Sbjct: 616 PNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQ 675

Query: 408 FVLEMPEKPN-SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
            +  MP   N +  W++LL + R+H+++E+  IAA  + +L  N     YV L+N  ++A
Sbjct: 676 LMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPN-VASHYVLLANIYSSA 734

Query: 467 GKWDSVTELREKMKLRGVLKDTGCSWV 493
           G WD  TE+R  MK +GV K+ GCSW+
Sbjct: 735 GLWDKATEVRRNMKEQGVRKEPGCSWI 761



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 184/383 (48%), Gaps = 26/383 (6%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNT-NISIKLLILHLKCGALKYAGQMFDE 105
           + P+ L+   +      G +IHAH+ K G   ++  ++  L+ L+ KCG      ++FD 
Sbjct: 99  AFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDR 158

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           + +R   ++N +I+      + E +L   R ++     P  +T   ++   T C SN+P+
Sbjct: 159 ISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVV---TAC-SNLPM 214

Query: 166 PRNL--GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
           P  L  G+ VHA  L+   + +  +   LV  Y K GK + ++++      ++++   ++
Sbjct: 215 PEGLMMGKQVHAYGLR-KGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTV 273

Query: 224 ISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKN- 278
           +S       + +A E  R+     VE D    ++++   S  +E  R   E+H   +KN 
Sbjct: 274 LSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACS-HLEMLRTGKELHAYALKNG 332

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
              E+  +GSALVDMY  C ++   RRVFD M  + +  W +MI GY +N +  +AL LF
Sbjct: 333 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 392

Query: 339 CMMQECC-VQPNYVTFLGALSACGHAGLVDK-----GREIFESMERDYSMKPKMEHYACM 392
             M+E   +  N  T  G + AC  +G   +     G  +   ++RD  ++        +
Sbjct: 393 IGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNT------L 446

Query: 393 VDLLGRAGSLEQALKFVLEMPEK 415
           +D+  R G ++ A++   +M ++
Sbjct: 447 MDMYSRLGKIDIAMRIFGKMEDR 469



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/261 (25%), Positives = 118/261 (45%), Gaps = 19/261 (7%)

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           +++  + E++     ++  G +PD Y F  +LKA    +        LG+ +HA + K  
Sbjct: 73  VRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQD-----MELGKQIHAHVYKFG 127

Query: 182 VKADDV-LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
              D V +   LV+ Y K G       VFD + E+N +   S+IS   S    E A E F
Sbjct: 128 YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAF 187

Query: 241 RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLI--KNVFFEDVKLG-------SALV 291
           R  +++++   +  +    +S+ TA   L +   L+  K V    ++ G       + LV
Sbjct: 188 RCMLDENVEPSSFTL----VSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLV 243

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
            MY K GK+  ++ +      +++ TW +++    +N    +ALE    M    V+P+  
Sbjct: 244 AMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303

Query: 352 TFLGALSACGHAGLVDKGREI 372
           T    L AC H  ++  G+E+
Sbjct: 304 TISSVLPACSHLEMLRTGKEL 324


>gi|188509949|gb|ACD56635.1| putative pentatricopeptide repeat protein [Gossypium raimondii]
          Length = 667

 Score =  261 bits (667), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 147/448 (32%), Positives = 248/448 (55%), Gaps = 24/448 (5%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
            ++ S L     S T   G  +H+   K+  +   N S  LL ++ KCG L  A ++F++
Sbjct: 114 ATIISVLVGCAKSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEK 173

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           + +R + ++  MIAGY ++G  + ++ L++++   G + D    + IL A  C RS    
Sbjct: 174 MGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHA--CARSG--- 228

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
             + G+ VH  I   ++ ++  +  AL+D Y K G    A  VF  M+ K++I   +M+ 
Sbjct: 229 SLDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVG 288

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
                           +T+        A I     S+    +  E+H  +++N +  D  
Sbjct: 289 ELKPDS----------RTM--------ACILPACASLSALERGKEIHGYILRNGYSSDRH 330

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           + +ALVD+Y KCG +  AR +FD +  K++ +WT MI GYG +G  N+A+  F  M++  
Sbjct: 331 VANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAG 390

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
           ++P+ V+F+  L AC H+GL+++G   F  M+ D++++PK+EHYACMVDLL R G+L +A
Sbjct: 391 IEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKA 450

Query: 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465
            KF+  +P  P++ +W ALL  CR++ D+E+A   A  +F+L   +  G YV L+N  A 
Sbjct: 451 YKFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEPEN-TGYYVLLANIYAE 509

Query: 466 AGKWDSVTELREKMKLRGVLKDTGCSWV 493
           A KW+ V  +REK+  +G+ K+ GCSW+
Sbjct: 510 AEKWEEVKRMREKIGKKGLRKNPGCSWI 537



 Score = 95.1 bits (235), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 93/402 (23%), Positives = 172/402 (42%), Gaps = 84/402 (20%)

Query: 85  KLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG--- 141
           KL+  +  CG LK   ++FD + ++ +  +N+M++ Y K G  +ES+ L + +V  G   
Sbjct: 1   KLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEKGIEG 60

Query: 142 ----------------------------------ERPDGYTFSM-----------ILKAS 156
                                             ER  G    M           I+   
Sbjct: 61  KRSESASELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATIISVL 120

Query: 157 TCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216
             C  +  L  +LG+ VH+  +K   +        L+D Y K G    A  VF+ M E+N
Sbjct: 121 VGCAKSGTL--SLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMGERN 178

Query: 217 VICSTSMISGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIE--GYSISIETARKALE 270
           V+  TSMI+G+   G+ + A    +++ ++ V+ D+V   +++     S S++  +   +
Sbjct: 179 VVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHACARSGSLDNGK---D 235

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           VH  +  N    ++ + +AL+DMYAKCG ++ A  VF  M  K++ +W +M+        
Sbjct: 236 VHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGE------ 289

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD-YSMKPKMEHY 389
                          ++P+  T    L AC     +++G+EI   + R+ YS    + + 
Sbjct: 290 ---------------LKPDSRTMACILPACASLSALERGKEIHGYILRNGYSSDRHVAN- 333

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
             +VDL  + G L  A + + +M    +   W  +++   +H
Sbjct: 334 -ALVDLYVKCGVLGLA-RLLFDMIPSKDLVSWTVMIAGYGMH 373


>gi|297597850|ref|NP_001044616.2| Os01g0815900 [Oryza sativa Japonica Group]
 gi|56785064|dbj|BAD82703.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|255673814|dbj|BAF06530.2| Os01g0815900 [Oryza sativa Japonica Group]
          Length = 566

 Score =  261 bits (667), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 169/502 (33%), Positives = 267/502 (53%), Gaps = 51/502 (10%)

Query: 22  LVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTN 81
           +VP N TFP  L+          A +  +AL           G ++H HITK G+  +  
Sbjct: 83  MVPDNLTFPFILK----------ACARINALNE---------GEQMHNHITKLGLLSDIF 123

Query: 82  ISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG 141
           +S  L+ L+  CG L YA  +FDE+  + + ++N +I GY +  + ++ L+L + + + G
Sbjct: 124 VSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEG 183

Query: 142 ERPDGYTFSMILKAST------------------CCRSNVPLPRNL-------GRMVHAQ 176
            + D  T   ++ A T                  C   +V L   L       G++  A+
Sbjct: 184 VKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAE 243

Query: 177 ILKCDVKADDVL-YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
            +  ++K  +++   A++ +Y KG     AR +FD + +K++I  +SMISG+       D
Sbjct: 244 KVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSD 303

Query: 236 AEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFEDVKLGSALV 291
           A EIFR+ +++  V  +A++    +S      AL+    VH  + +N    D  + ++L+
Sbjct: 304 ALEIFRQ-MQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLI 362

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
           DMY KCG   +A +VF  M++K+  +W S+I G   NG   ++L LF  M     +PN V
Sbjct: 363 DMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGV 422

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
           TFLG L AC +A LV++G + FESM+R YS++P+M+HY C+VDLLGRAG LE+AL+F+ E
Sbjct: 423 TFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITE 482

Query: 412 MPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471
           MP  P+  VW  LL SC  H DV +A I   ++ +L  ++  G Y  LSN  A+A +W  
Sbjct: 483 MPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSN-SGNYTLLSNAYASAHRWSE 541

Query: 472 VTELREKMKLRGVLKDTGCSWV 493
              +R+ M    V K  GCS V
Sbjct: 542 AMNVRQCMADTDVRKSPGCSAV 563



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/432 (25%), Positives = 196/432 (45%), Gaps = 43/432 (9%)

Query: 96  LKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           L +A ++FD++   T   +N +I G  ++    ++++  +K    G  PD  TF  ILKA
Sbjct: 37  LVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKA 96

Query: 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
             C R N     N G  +H  I K  + +D  +  +L+  Y   G   YAR VFD M+ K
Sbjct: 97  --CARIN---ALNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVK 151

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFR----KTVEKD----IVVYNA-------------- 253
           +V+   S+I G+      +D   +F+    + V+ D    I V +A              
Sbjct: 152 DVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMV 211

Query: 254 -MIEGYSISIET-----------ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
             IE Y I ++             R  L+   ++  N+   ++   +A++  YAK   I 
Sbjct: 212 RYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIV 271

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            AR++FD + +K++ +W+SMI GY +  + + ALE+F  MQ   V+P+ +     +S+C 
Sbjct: 272 SARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCA 331

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN---S 418
           H G +D G+ + E + R+ ++K        ++D+  + GS ++AL+   EM EK     +
Sbjct: 332 HLGALDLGKWVHEYVRRN-NIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWN 390

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            +   L ++    + + +      E F+ N     G  +A +N        D    ++  
Sbjct: 391 SIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRL 450

Query: 479 MKLRGVLKDTGC 490
             L   +K  GC
Sbjct: 451 YSLEPQMKHYGC 462


>gi|326507322|dbj|BAJ95738.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 593

 Score =  261 bits (667), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 153/419 (36%), Positives = 240/419 (57%), Gaps = 17/419 (4%)

Query: 82  ISIKLLIL-HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSS 140
           I I  LI  + K G +  A ++FD + +RT +++N MIA Y   G+  E+L+L  +++S 
Sbjct: 137 IPINCLITGYSKAGDVDKARRLFDGMERRTSASWNSMIACYAHGGEFREALALFDRMLSE 196

Query: 141 GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGG 200
           G RP+  T + +   S C +S      + G+ V   I + D++ + +++TAL++ YVK  
Sbjct: 197 GARPNAITITSVF--SICAKSG---DLDTGKRVRDLIGEDDLQ-NVIVHTALMEMYVKCR 250

Query: 201 KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI 260
               AR  FD M +++V+  ++MI+G+   G   ++ E+F +    D       + G  +
Sbjct: 251 AIDDARREFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVG--V 308

Query: 261 SIETARKALEVHCQLIKNVFFEDVKL------GSALVDMYAKCGKIDDARRVFDHMQQKN 314
               A+   +   + I N + E+ +L      GSAL+DMY +CG +  AR VF  M+QK 
Sbjct: 309 ISACAQLGSDELVEQIGN-YAENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKG 367

Query: 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374
           V TW SMI G   NG    A+ L+  M E  VQPN +TF+  L+AC HAGLVD+G   FE
Sbjct: 368 VITWNSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALLAACTHAGLVDQGMAFFE 427

Query: 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDV 434
            M+R++ + P++EH AC+VDLL ++G L +A KF+ +M  +PN+ +W  LLSSCR H DV
Sbjct: 428 EMKREHLVSPQVEHCACIVDLLCKSGGLWEAYKFICDMEVEPNAVIWTTLLSSCRAHADV 487

Query: 435 EMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           E+A +A+ ++  +   D    YV LSN  A AG W    E+R+ M+ + V K +  SW+
Sbjct: 488 ELAKLASRKLLAMEP-DNSSIYVLLSNIYADAGLWGDAREIRDLMRSKNVQKLSAYSWI 545



 Score =  121 bits (304), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 96/331 (29%), Positives = 143/331 (43%), Gaps = 78/331 (23%)

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           GR VH   L   +  D  + TALVD Y K G    A   FD M  K+ I    +I+G+  
Sbjct: 89  GRQVHCHALVRGLLGDVFVLTALVDFYAKNGDMESAVSAFDEMPVKDPIPINCLITGYSK 148

Query: 230 QGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQL-----------IKN 278
            G V+ A  +F     +    +N+MI  Y+   E  R+AL +  ++           I +
Sbjct: 149 AGDVDKARRLFDGMERRTSASWNSMIACYAHGGEF-REALALFDRMLSEGARPNAITITS 207

Query: 279 VF-----------------------FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
           VF                        ++V + +AL++MY KC  IDDARR FD M Q++V
Sbjct: 208 VFSICAKSGDLDTGKRVRDLIGEDDLQNVIVHTALMEMYVKCRAIDDARREFDRMSQRDV 267

Query: 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG----------- 364
             W++MI GY +NG P ++LELF  M+    +PN VT +G +SAC   G           
Sbjct: 268 VAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLGSDELVEQIGNY 327

Query: 365 ---------------LVD---------KGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
                          L+D         + R +F  ME+   +      +  M+  L   G
Sbjct: 328 AENQRLPLTSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVIT-----WNSMIRGLAMNG 382

Query: 401 SLEQALKFVLEMPE---KPNSDVWAALLSSC 428
             E A+    +M E   +PN   + ALL++C
Sbjct: 383 FAEDAISLYEKMAENGVQPNEITFVALLAAC 413



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 90/330 (27%), Positives = 145/330 (43%), Gaps = 52/330 (15%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           N +T TS+ S      + DT   G ++   I +  ++ N  +   L+ +++KC A+  A 
Sbjct: 201 NAITITSVFSICAKSGDLDT---GKRVRDLIGEDDLQ-NVIVHTALMEMYVKCRAIDDAR 256

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           + FD + QR + A++ MIAGY +NG+  ESL L  ++ ++  RP+  T   ++ A     
Sbjct: 257 REFDRMSQRDVVAWSTMIAGYAQNGRPLESLELFERMKATDCRPNEVTLVGVISACAQLG 316

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           S+  L   +G     Q L         L +AL+D Y + G    AR VF  M +K VI  
Sbjct: 317 SD-ELVEQIGNYAENQRLPL----TSYLGSALIDMYTRCGHVGRARSVFSRMEQKGVITW 371

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLI 276
            SMI G    GF EDA  ++ K  E  +    + + A++            A   H  L+
Sbjct: 372 NSMIRGLAMNGFAEDAISLYEKMAENGVQPNEITFVALL------------AACTHAGLV 419

Query: 277 KN--VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQA 334
                FFE++K                      +H+    V     ++D   K+G   +A
Sbjct: 420 DQGMAFFEEMKR---------------------EHLVSPQVEHCACIVDLLCKSGGLWEA 458

Query: 335 LELFCMMQECCVQPNYVTFLGALSAC-GHA 363
            +  C M+   V+PN V +   LS+C  HA
Sbjct: 459 YKFICDME---VEPNAVIWTTLLSSCRAHA 485


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  261 bits (667), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 148/457 (32%), Positives = 254/457 (55%), Gaps = 14/457 (3%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           NP   TS+   L+  +   +   G  IH    KT      ++   LL ++ KCG ++ A 
Sbjct: 250 NPFVLTSV---LKAAVCLSSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDAR 306

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
            +F+ +P   +  ++++I+ Y ++ Q E++  +  +++ S   P+ ++ S +L+A     
Sbjct: 307 TVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQAC---- 362

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           +NV    +LG+ +H  ++K   +++  +  AL+D Y K      +  +F  + + N +  
Sbjct: 363 ANVAF-LDLGQQIHNLVIKLGYESELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSW 421

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLI 276
            ++I G+   GF EDA  +F++     +    V +++++   + +  + +  +++H  + 
Sbjct: 422 NTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACA-NTASIKHTVQIHSLIE 480

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           K+ F  D  + ++L+D YAKCG I DA +VF+ + Q +V +W ++I GY  +G    ALE
Sbjct: 481 KSTFNNDTIVCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALE 540

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           LF  M +   +PN VTF+  LS CG  GLV++G  +F SM  D+ +KP M+HY C+V LL
Sbjct: 541 LFNRMNKSDTKPNDVTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLL 600

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456
           GRAG L  ALKF+ ++P  P+  VW ALLSSC +H +V +   +A ++ ++   D    Y
Sbjct: 601 GRAGRLNDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDET-TY 659

Query: 457 VALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           V LSN  AAAG  D V  LR+ M+  GV K+ G SWV
Sbjct: 660 VLLSNMYAAAGILDQVALLRKSMRNIGVKKEVGLSWV 696



 Score =  145 bits (365), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 168/350 (48%), Gaps = 29/350 (8%)

Query: 38  SLSNP-LTATSLPSALQHYINSDTPFYGLKIHAHITKTG--VKPNTNISIKLLILHLKCG 94
           SL+ P L + +    LQ  I       G  +HA + + G   + +T  +  LL L+ K G
Sbjct: 39  SLALPKLDSYACARLLQRCIARGDARAGRAVHARVVQRGGVAQLDTFCANVLLNLYAKLG 98

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
            L  A ++FD +P+R + ++  ++ GY   G  EE+  L R+L   G   + +  + ILK
Sbjct: 99  PLAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRRLQREGHEVNHFVLTTILK 158

Query: 155 --------ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR 206
                     TCC             +HA   K     +  + ++L+D+Y   G  S+AR
Sbjct: 159 VLVAMDAPGLTCC-------------IHACACKLGHDRNAFVGSSLIDAYSLCGAVSHAR 205

Query: 207 IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISI 262
            VFD ++ K+ +  T+M+S +      EDA   F K      + +  V  ++++  ++ +
Sbjct: 206 CVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKA-AVCL 264

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
            +A     +H   +K +   +  +G AL+DMYAKCG I+DAR VF+ +   +V  W+ +I
Sbjct: 265 SSAVLGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLI 324

Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
             Y ++    QA E+F  M    V PN  +  G L AC +   +D G++I
Sbjct: 325 SRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQI 374



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 106/425 (24%), Positives = 195/425 (45%), Gaps = 14/425 (3%)

Query: 48  LPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP 107
           L + L+  +  D P     IHA   K G   N  +   L+  +  CGA+ +A  +FD + 
Sbjct: 153 LTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGII 212

Query: 108 QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR 167
            +    +  M++ Y +N   E++L+   K+  +G +P+ +  + +LKA+ C  S V    
Sbjct: 213 WKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAV---- 268

Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
            LG+ +H   +K     +  +  AL+D Y K G    AR VF+++   +VI  + +IS +
Sbjct: 269 -LGKGIHGCAVKTLCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDVILWSFLISRY 327

Query: 228 MSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY---SISIETARKALEVHCQLIKNVFFEDV 284
                 E A E+F + +   +V     + G      ++       ++H  +IK  +  ++
Sbjct: 328 AQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNLVIKLGYESEL 387

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
            +G+AL+D+YAKC  ++++  +F  ++  N  +W ++I GY ++G    AL +F  M+  
Sbjct: 388 FVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAA 447

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC--MVDLLGRAGSL 402
            V    VTF   L AC +   +    +I   +E+       +    C  ++D   + G +
Sbjct: 448 HVLSTQVTFSSVLRACANTASIKHTVQIHSLIEKSTFNNDTI---VCNSLIDTYAKCGCI 504

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
             ALK V E   + +   W A++S   LH     A    N + K +       +VAL + 
Sbjct: 505 RDALK-VFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPNDVTFVALLSV 563

Query: 463 LAAAG 467
             + G
Sbjct: 564 CGSTG 568



 Score = 90.1 bits (222), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 70/270 (25%), Positives = 131/270 (48%), Gaps = 23/270 (8%)

Query: 170 GRMVHAQILKCD--VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
           GR VHA++++     + D      L++ Y K G  + AR +FD M E+N++   +++ G+
Sbjct: 66  GRAVHARVVQRGGVAQLDTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGY 125

Query: 228 MSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLI---------KN 278
             +G  E+A  +FR+ ++++    N  +    + +  A  A  + C +          +N
Sbjct: 126 ALRGGFEEAAGLFRR-LQREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRN 184

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
            F     +GS+L+D Y+ CG +  AR VFD +  K+  TWT+M+  Y +N  P  AL  F
Sbjct: 185 AF-----VGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTF 239

Query: 339 CMMQECCVQPNYVTFLGALSA--CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
             M+    +PN       L A  C  + ++ KG     +++     +P +     ++D+ 
Sbjct: 240 SKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIHGC-AVKTLCDTEPHVG--GALLDMY 296

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
            + G +E A + V E+    +  +W+ L+S
Sbjct: 297 AKCGYIEDA-RTVFEIIPHDDVILWSFLIS 325


>gi|224125684|ref|XP_002319650.1| predicted protein [Populus trichocarpa]
 gi|222858026|gb|EEE95573.1| predicted protein [Populus trichocarpa]
          Length = 705

 Score =  261 bits (667), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 159/471 (33%), Positives = 250/471 (53%), Gaps = 35/471 (7%)

Query: 48  LPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP 107
           +PS L+          G +IH    K G+  +  +   L+ ++ +CG+L  A  +FD++ 
Sbjct: 112 IPSVLKACSQISVARMGKEIHGFSVKNGLVSDVFVVNALMQMYSECGSLVSARLLFDKMS 171

Query: 108 ----------------------QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
                                 QR++ ++  MIAGY++   +EE   L  +++     P+
Sbjct: 172 ERDVVSWSTMIRAYITLFYGFSQRSIVSWTAMIAGYIRCNDLEEGERLFVRMIEENVFPN 231

Query: 146 GYT-FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSY 204
             T  S+I+               LG+ +HA IL+        L TALVD Y K G+   
Sbjct: 232 DITMLSLIISCGFVGAVQ------LGKRLHAYILRNGFGMSLALATALVDMYGKCGEIRS 285

Query: 205 ARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIET 264
           AR +FD M  K+V+  T+MIS +     ++ A ++F + +  + V  N +     +S+  
Sbjct: 286 ARAIFDSMKNKDVMTWTAMISAYAQANCIDYAFQLFVQ-MRDNGVRPNELTMVSLLSLCA 344

Query: 265 ARKALEV----HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
              AL++    H  + K     DV L +AL+DMYAKCG I  A+R+F     +++ TW  
Sbjct: 345 VNGALDMGKWFHAYIDKQGVEVDVILKTALIDMYAKCGDISGAQRLFSEAIDRDICTWNV 404

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
           M+ GYG +G   +AL+LF  M+   V+PN +TF+GAL AC HAGLV +G+ +FE M  D+
Sbjct: 405 MMAGYGMHGYGEKALKLFTEMETLGVKPNDITFIGALHACSHAGLVVEGKGLFEKMIHDF 464

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIA 440
            + PK+EHY CMVDLLGRAG L++A K +  MP  PN  +W A+L++C++H +  M  +A
Sbjct: 465 GLVPKVEHYGCMVDLLGRAGLLDEAYKMIESMPVTPNIAIWGAMLAACKIHKNSNMGELA 524

Query: 441 ANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
           A E+  L   +  G  V +SN  AAA +W+ V  +R+ +K  G+ K+ G S
Sbjct: 525 ARELLALEPQN-CGYKVLMSNIYAAANRWNDVAGMRKAVKDTGIKKEPGMS 574


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  261 bits (667), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 149/464 (32%), Positives = 249/464 (53%), Gaps = 40/464 (8%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G K+H H+ K G+  N  +   L+ ++  CG +  A  +FD   +  + ++N MI+GY +
Sbjct: 154 GKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNR 213

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
             + EES+ L+ ++  +   P   T  ++L A +  +      ++L + VH  + +C  +
Sbjct: 214 MKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKD-----KDLCKRVHEYVSECKTE 268

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               L  ALV++Y   G+   A  +F  M  ++VI  TS++ G++ +G ++ A   F + 
Sbjct: 269 PSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQM 328

Query: 244 VEKDIVVYNAMIEGY------SISIETARK------------------------ALEV-- 271
             +D + +  MI+GY      + S+E  R+                        +LE+  
Sbjct: 329 PVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGE 388

Query: 272 --HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
                + KN    DV +G+AL+DMY KCG  + A++VF  M Q++ FTWT+M+ G   NG
Sbjct: 389 WIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNG 448

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
              +A+++F  MQ+  +QP+ +T+LG LSAC H+G+VD+ R+ F  M  D+ ++P + HY
Sbjct: 449 QGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHY 508

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
            CMVD+LGRAG +++A + + +MP  PNS VW ALL + RLH+D  MA +AA +I +L  
Sbjct: 509 GCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEP 568

Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            D    Y  L N  A   +W  + E+R K+    + K  G S +
Sbjct: 569 -DNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLI 611



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 184/398 (46%), Gaps = 46/398 (11%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLK--CGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           ++H+     GV PN     KL +       G + YA ++F ++P+  +  +N MI G+ K
Sbjct: 52  QLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKGWSK 111

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
                E + L   ++  G  PD +TF  +L      R    L    G+ +H  ++K  + 
Sbjct: 112 VDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLK--RDGGALA--CGKKLHCHVVKFGLG 167

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           ++  +  ALV  Y   G    AR VFD   +++V     MISG+      E++ E+  + 
Sbjct: 168 SNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVE- 226

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE-----DVKLGSALVDMYAKCG 298
           +E+++V   ++     +S  +  K  ++ C+ +     E      ++L +ALV+ YA CG
Sbjct: 227 MERNLVSPTSVTLLLVLSACSKVKDKDL-CKRVHEYVSECKTEPSLRLENALVNAYAACG 285

Query: 299 KIDDARRVFDHMQQKNVFTWTS-------------------------------MIDGYGK 327
           ++D A R+F  M+ ++V +WTS                               MIDGY +
Sbjct: 286 EMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLR 345

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
            G  N++LE+F  MQ   + P+  T +  L+AC H G ++ G  I   ++++  +K  + 
Sbjct: 346 AGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKN-KIKNDVV 404

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
               ++D+  + G  E+A K   +M ++ +   W A++
Sbjct: 405 VGNALIDMYFKCGCSEKAQKVFHDMDQR-DKFTWTAMV 441



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 140/311 (45%), Gaps = 22/311 (7%)

Query: 199 GGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAM 254
           GG  SYA  +F  + E +V+   +MI G+       +   ++    ++ V  D   +  +
Sbjct: 81  GGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFL 140

Query: 255 IEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKN 314
           + G            ++HC ++K     ++ + +ALV MY+ CG +D AR VFD   +++
Sbjct: 141 LNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKED 200

Query: 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374
           VF+W  MI GY +     +++EL   M+   V P  VT L  LSAC      D  + + E
Sbjct: 201 VFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHE 260

Query: 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV--WAALLSSCRLHD 432
            +  +   +P +     +V+     G ++ A++    M  +   DV  W +++       
Sbjct: 261 YVS-ECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKAR---DVISWTSIVKGYVERG 316

Query: 433 DVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD----- 487
           ++++A    ++   +   DR    + +   L  AG ++   E+  +M+  G++ D     
Sbjct: 317 NLKLARTYFDQ---MPVRDRISWTIMIDGYL-RAGCFNESLEIFREMQSAGMIPDEFTMV 372

Query: 488 ---TGCSWVGT 495
              T C+ +G+
Sbjct: 373 SVLTACAHLGS 383


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  261 bits (666), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 148/431 (34%), Positives = 242/431 (56%), Gaps = 11/431 (2%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +H +  +   +    I+   +  + KCG+L +A  +F  +  +++S++N +I G+ +NG 
Sbjct: 438 LHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGD 497

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
             ++L    ++   G  PD ++   +L A  C R  +      G+ +H  +L+  ++ + 
Sbjct: 498 PIKALDFYFEMTRLGILPDDFSIVSLLLA--CGRLGL---LQYGKEIHGFVLRNGLEMNS 552

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV-- 244
            +  +L+  Y    K  Y R  F+ M +KN +C  +M+SG+       +A  +FR+ +  
Sbjct: 553 FVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSD 612

Query: 245 --EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
             E D +   A I G    +       EVHC  +KN   ED  +  +L+DMYAK G +  
Sbjct: 613 GLEPDEIAI-ASILGACSQLSALGLGKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGH 671

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           ++R+F+ +  K V +W  MI G+G +G  N+A+ELF  M+    QP+  TFLG L AC H
Sbjct: 672 SQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFLGVLQACCH 731

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
           AGLV +G      M+  Y ++P++EHYAC++D+LGRAG L +AL F+ EMPE+P++ +W+
Sbjct: 732 AGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFINEMPEEPDAKIWS 791

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
           +LLSS   + D+EM    A ++  L AN +  +Y+ LSN  A AGKWD V  +R+KMK  
Sbjct: 792 SLLSSSITYVDLEMGEKFAEKLLALEAN-KADSYILLSNLYATAGKWDVVRMVRQKMKDL 850

Query: 483 GVLKDTGCSWV 493
            + KD GCSW+
Sbjct: 851 SLQKDVGCSWI 861



 Score =  132 bits (331), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 90/318 (28%), Positives = 162/318 (50%), Gaps = 16/318 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H    K G+  +  +   ++ L+ KCG L  A ++FD++P++ L ++N +I G+ +
Sbjct: 229 GKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSE 288

Query: 124 NGQVEESLSLVRKLVSSGER--PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           NG   E+    R L+ SG+   PD  T   +L   +    NV    ++G ++H   +K  
Sbjct: 289 NGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCS-GEGNV----DVGMVIHGMAVKLG 343

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +  + ++  AL+D Y K G  S A I+F  +  K+V+   SMI  +  +GFV +  ++ R
Sbjct: 344 LVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLR 403

Query: 242 KTVEK-------DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
           K   +       ++ + N +      S   + +AL  H   +++ F     + +A +  Y
Sbjct: 404 KMWMEEELMEVNEVTILNLLPACLEESELLSLRAL--HGYSLRHSFQYKELINNAFIAAY 461

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           AKCG +  A  VF  M  K+V +W ++I G+ +NG+P +AL+ +  M    + P+  + +
Sbjct: 462 AKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIV 521

Query: 355 GALSACGHAGLVDKGREI 372
             L ACG  GL+  G+EI
Sbjct: 522 SLLLACGRLGLLQYGKEI 539



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 81/287 (28%), Positives = 147/287 (51%), Gaps = 13/287 (4%)

Query: 82  ISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG 141
           ++ +L+ ++  CG    +  +FD L  + L  +N +++GY++N   +E++    +L+S  
Sbjct: 145 LNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVT 204

Query: 142 E-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGG 200
           E +PD +TF  ++KA   C     +  +LG+ VH   +K  +  D  +  A++  Y K G
Sbjct: 205 EFQPDNFTFPCLIKA---CTGKCDI--HLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCG 259

Query: 201 KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK-DIVVYNAMIEGYS 259
               A  +FD M E+N+I   S+I GF   GF  +A   FR  +E  D ++ +       
Sbjct: 260 FLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTL 319

Query: 260 ISIETARKALEV----HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
           + + +    ++V    H   +K     ++ + +AL+DMY+KCG + +A  +F  ++ K+V
Sbjct: 320 LPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAAILFRKIENKSV 379

Query: 316 FTWTSMIDGYGKNGNPNQALELF--CMMQECCVQPNYVTFLGALSAC 360
            +W SMI  Y + G   +  +L     M+E  ++ N VT L  L AC
Sbjct: 380 VSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPAC 426



 Score = 88.2 bits (217), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 5/185 (2%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           YG +IH  + + G++ N+ +++ LL L+  C    Y    F+ +  +    +N M++GY 
Sbjct: 535 YGKEIHGFVLRNGLEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYS 594

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +N    E+LSL R+++S G  PD    + IL A   C     L   LG+ VH   LK  +
Sbjct: 595 QNELPNEALSLFRQMLSDGLEPDEIAIASILGA---CSQLSAL--GLGKEVHCFALKNSL 649

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             D+ +  +L+D Y K G   +++ +F+ +  K V     MI+GF   G    A E+F  
Sbjct: 650 MEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFED 709

Query: 243 TVEKD 247
               D
Sbjct: 710 MKRSD 714



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 63/251 (25%), Positives = 117/251 (46%), Gaps = 12/251 (4%)

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
           NV + R L  M+    +      D VL T L+  Y   G    +R+VFD +L KN+    
Sbjct: 122 NVEIGRKLDEML---CVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWN 178

Query: 222 SMISGFMSQGFVEDAEEIFRKTV-----EKDIVVYNAMIEGYSISIETARKALEVHCQLI 276
           +++SG++     ++A   F + +     + D   +  +I+  +   +       VH   +
Sbjct: 179 ALVSGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDI-HLGKSVHGMAV 237

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           K     D+ +G+A++ +Y KCG +D+A  +FD M ++N+ +W S+I G+ +NG   +A  
Sbjct: 238 KMGLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYR 297

Query: 337 LFCMMQEC--CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394
            F  + E    + P+  T +  L  C   G VD G  +   M     +  ++     ++D
Sbjct: 298 AFRSLLESGDGLIPDVATMVTLLPVCSGEGNVDVGM-VIHGMAVKLGLVHELMVCNALID 356

Query: 395 LLGRAGSLEQA 405
           +  + G L +A
Sbjct: 357 MYSKCGCLSEA 367



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/152 (22%), Positives = 78/152 (51%), Gaps = 4/152 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H    K  +  +  ++  L+ ++ K G L ++ ++F+ L  + ++++N MI G+  
Sbjct: 637 GKEVHCFALKNSLMEDNFVACSLMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGV 696

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +GQ  +++ L   +  S ++PD +TF  +L+A  CC + + +   L  +   Q L   ++
Sbjct: 697 HGQGNKAVELFEDMKRSDKQPDRFTFLGVLQA--CCHAGL-VSEGLNYLAQMQTLY-KLE 752

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
            +   Y  ++D   + G+ + A    + M E+
Sbjct: 753 PELEHYACVIDMLGRAGRLNEALNFINEMPEE 784


>gi|242076924|ref|XP_002448398.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
 gi|241939581|gb|EES12726.1| hypothetical protein SORBIDRAFT_06g026540 [Sorghum bicolor]
          Length = 865

 Score =  261 bits (666), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 150/486 (30%), Positives = 262/486 (53%), Gaps = 41/486 (8%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L +T+  S+L       +  +G ++HA + +     +  ++  L+ L+ KCG  K A  +
Sbjct: 268 LDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGV 327

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           F+ L  R   A+  +IAG+L++G   ES+ L  ++ +     D +  + ++  S CC   
Sbjct: 328 FNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLDQFALATLI--SGCCSR- 384

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
             +   LGR +H+  LK       V+  +L+  Y K      A  +F  M EK+++  TS
Sbjct: 385 --MDLCLGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTS 442

Query: 223 MISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY---------------SISIETARK 267
           MI+     G +  A E F     K+++ +NAM+  Y                +S +  R 
Sbjct: 443 MITAHSQVGNIAKAREFFDGMSTKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRP 502

Query: 268 ALEVHCQLIK------------NVFFEDVKLG--------SALVDMYAKCGKIDDARRVF 307
               +  L K             +    VK+G        +A++ MY+KCG+I +AR+VF
Sbjct: 503 DWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLILDTSVANAVITMYSKCGRILEARKVF 562

Query: 308 DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367
           D +  K++ +W +MI GY ++G   QA+E+F  + +   +P+Y++++  LS C H+GLV 
Sbjct: 563 DFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQ 622

Query: 368 KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
           +G+  F+ M+R +++ P +EH++CMVDLLGRAG L +A   + EMP KP ++VW ALLS+
Sbjct: 623 EGKSYFDMMKRVHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDEMPMKPTAEVWGALLSA 682

Query: 428 CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487
           C++H + E+A +AA  +F+L++ D  G+Y+ ++   A AGK D   ++R+ M+ +G+ K+
Sbjct: 683 CKIHGNNELAELAAKHVFELDSPD-SGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKN 741

Query: 488 TGCSWV 493
            G SW+
Sbjct: 742 PGYSWM 747



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 170/364 (46%), Gaps = 45/364 (12%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
            L++   + K G + +++++  L+ + ++CG +  A ++F  + + T+   N M+ GY+K
Sbjct: 157 ALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVK 216

Query: 124 -------------------------------NGQVEESLSLVRKLVSSGERPDGYTFSMI 152
                                          +G+V E+L +V  + S G R D  T++  
Sbjct: 217 TYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSS 276

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L A  C R +       G+ +HAQ+++     D  + +ALV+ Y K G    A+ VF+ +
Sbjct: 277 LTA--CARLS---SLRWGKQLHAQVIRNLPCIDPYVASALVELYAKCGCFKEAKGVFNSL 331

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL--- 269
            ++N +  T +I+GF+  G   ++ E+F + +  +++  +       IS   +R  L   
Sbjct: 332 HDRNNVAWTVLIAGFLQHGCFTESVELFNQ-MRAELMTLDQFALATLISGCCSRMDLCLG 390

Query: 270 -EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
            ++H   +K+   + V + ++L+ MYAKC  +  A  +F  M +K++ +WTSMI  + + 
Sbjct: 391 RQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAESIFRFMNEKDIVSWTSMITAHSQV 450

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           GN  +A E F  M       N +T+   L A    G  + G  ++  M  +  ++P    
Sbjct: 451 GNIAKAREFFDGMS----TKNVITWNAMLGAYIQHGAEEDGLRMYNVMLSEKDVRPDWVT 506

Query: 389 YACM 392
           Y  +
Sbjct: 507 YVTL 510



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 80/318 (25%), Positives = 147/318 (46%), Gaps = 40/318 (12%)

Query: 78  PNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL 137
           PN      +L  ++K G L  A ++F  +P R ++++N +++GY ++ Q   SL     +
Sbjct: 69  PNVITHNVMLNGYVKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSM 128

Query: 138 VSSGER-PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196
             SG+  P+ +TF+  +K+           R+L   +   + K   + D  +  ALVD +
Sbjct: 129 HRSGDSSPNAFTFAYAMKSCGALGE-----RSLALQLLGMVQKFGSQDDSDVAAALVDMF 183

Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE 256
           V+ G    A  +F  + E  + C  SM+ G++    V+ A E+F    E+D+V +N M+ 
Sbjct: 184 VRCGTVDLASRLFVRIKEPTIFCRNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVS 243

Query: 257 GYSIS----------------------------------IETARKALEVHCQLIKNVFFE 282
             S S                                  + + R   ++H Q+I+N+   
Sbjct: 244 ALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPCI 303

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           D  + SALV++YAKCG   +A+ VF+ +  +N   WT +I G+ ++G   +++ELF  M+
Sbjct: 304 DPYVASALVELYAKCGCFKEAKGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMR 363

Query: 343 ECCVQPNYVTFLGALSAC 360
              +  +       +S C
Sbjct: 364 AELMTLDQFALATLISGC 381



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 72/348 (20%), Positives = 143/348 (41%), Gaps = 77/348 (22%)

Query: 174 HAQILKCDVKADDVLYTALVDSYVKGGKTSYAR-IVFDMMLEKNVICSTSMISGFMSQGF 232
           H +++   + +   L   L+ +Y+  G    AR ++   +   NVI    M++G++  G 
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALPDARRLLLTDIAHPNVITHNVMLNGYVKLGR 86

Query: 233 VEDAEEIFRKTVEKDIVVYNAMIEGY-------------------------SISIETARK 267
           + DA E+F +   +D+  +N ++ GY                         + +   A K
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSQQYLASLESFVSMHRSGDSSPNAFTFAYAMK 146

Query: 268 ----------ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARR------------ 305
                     AL++   + K    +D  + +ALVDM+ +CG +D A R            
Sbjct: 147 SCGALGERSLALQLLGMVQKFGSQDDSDVAAALVDMFVRCGTVDLASRLFVRIKEPTIFC 206

Query: 306 -------------------VFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
                              +FD M +++V +W  M+    ++G   +AL++   MQ   V
Sbjct: 207 RNSMLVGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 266

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY--ACMVDLLGRAGSLEQ 404
           + +  T+  +L+AC     +  G+++   + R+    P ++ Y  + +V+L  + G  ++
Sbjct: 267 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNL---PCIDPYVASALVELYAKCGCFKE 323

Query: 405 ALKFVLEMPEKPNSDVWAALLSSCRLH----DDVEMANIAANEIFKLN 448
           A K V       N+  W  L++    H    + VE+ N    E+  L+
Sbjct: 324 A-KGVFNSLHDRNNVAWTVLIAGFLQHGCFTESVELFNQMRAELMTLD 370


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  261 bits (666), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 161/502 (32%), Positives = 249/502 (49%), Gaps = 41/502 (8%)

Query: 25  PNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISI 84
           P Q+F   L   D   +     + P  ++          G  +H    K     +  I  
Sbjct: 106 PFQSFVIFLDLLDKCEDLPNKFTFPFVIKAASELKASRVGTAVHGMAIKLSFGMDLYILN 165

Query: 85  KLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERP 144
            L+  +  CG L  A ++F  +  + + ++N MI+ + +    E++L L  K+      P
Sbjct: 166 SLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMERENVMP 225

Query: 145 DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSY 204
           +  T   +L  S C +    L    GR V + I +  +K D  L  A++D Y K G    
Sbjct: 226 NSVTMVGVL--SACAKK---LDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDD 280

Query: 205 ARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS----- 259
           A+ +FD M E++V   T M+ G+   G  + A  +F     K+I  +N +I  Y      
Sbjct: 281 AQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKP 340

Query: 260 ---------ISIETARKALEV---------------------HCQLIKNVFFEDVKLGSA 289
                    + +    K  EV                     H  + +     +  L S+
Sbjct: 341 KEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISS 400

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349
           LVDMYAKCG ++ A  VF  +++++V+ W++MI G G +G    A++LF  MQE  V+PN
Sbjct: 401 LVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPN 460

Query: 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFV 409
            VTF   L AC HAGLVD+GR  F  ME  Y + P+M+HYACMVD+LGRAG LE+A++ +
Sbjct: 461 SVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAMELI 520

Query: 410 LEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKW 469
            EM   P++ VW ALL +C LH +VE+  +A++++ KL   +  GA V LSN  A  G+W
Sbjct: 521 NEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNH-GAIVLLSNIYAKTGRW 579

Query: 470 DSVTELREKMKLRGVLKDTGCS 491
           + V+ELR+ M+   + K+ GCS
Sbjct: 580 EKVSELRKLMRDTELKKEPGCS 601



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 134/485 (27%), Positives = 229/485 (47%), Gaps = 55/485 (11%)

Query: 33  LQNYDSLSNPLTATSLPSALQHYINSDTPFYGLK-IHAHITKTGVKPNTNISIKLLILHL 91
           LQN+ +L+N L   +    +   I+  +    LK +HA + +TG+  +   + KL     
Sbjct: 11  LQNFSTLNNNLLFRN--HQILSTIDKCSSSKQLKEVHARMLRTGLFFDPFSASKLFTASA 68

Query: 92  --KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGER-PDGYT 148
                 L YA  +FD++PQ  L  +N +I  Y  +    +S  +   L+   E  P+ +T
Sbjct: 69  LSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFT 128

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIV 208
           F  ++KA++  +++      +G  VH   +K     D  +  +LV  Y   G  S A  +
Sbjct: 129 FPFVIKAASELKAS-----RVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERL 183

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKA 268
           F  +  K+V+   SMIS F      EDA E+F K +E++ V+ N++     +S    +  
Sbjct: 184 FKGISCKDVVSWNSMISAFAQGNCPEDALELFLK-MERENVMPNSVTMVGVLSACAKKLD 242

Query: 269 LEVH---CQLIKNVFFE-DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
           LE     C  I+    + D+ L +A++DMY KCG +DDA+++FD M +++VF+WT M+DG
Sbjct: 243 LEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDG 302

Query: 325 YGK-------------------------------NGNPNQALELFCMMQECCV-QPNYVT 352
           Y K                               NG P +AL +F  +Q   + +P+ VT
Sbjct: 303 YAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVT 362

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
            +  LSAC   G +D G  I   ++R+  +       + +VD+  + GSLE+AL+    +
Sbjct: 363 LVSTLSACAQLGAIDLGGWIHVYIKRE-GIVLNCHLISSLVDMYAKCGSLEKALEVFYSV 421

Query: 413 PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN-ANDRPGAYVALSNTLAAAGKWDS 471
            E+ +  VW+A+++   +H        A +  F++  A  +P + V  +N L A      
Sbjct: 422 EER-DVYVWSAMIAGLGMHG---RGKAAIDLFFEMQEAKVKPNS-VTFTNVLCACSHAGL 476

Query: 472 VTELR 476
           V E R
Sbjct: 477 VDEGR 481


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  261 bits (666), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 140/433 (32%), Positives = 244/433 (56%), Gaps = 15/433 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL-PQRTLSAYNYMIAGYLKN 124
           ++H  + K G +   +I   L++ + KC ++  A ++F        +  +  MI G+++N
Sbjct: 327 QLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQN 386

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
              E+++ L  ++   G RP+ +T+S +L            P +L   +HAQI+K   + 
Sbjct: 387 NNNEKAVDLFCQMSREGVRPNHFTYSTVLAGK---------PSSLLSQLHAQIIKAYYEK 437

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
              + TAL+D+YVK G    +  VF  +  K+++  ++M++G       E A E+F + V
Sbjct: 438 VPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLV 497

Query: 245 EKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           ++ +      ++++I   S S  T     ++H   +K+     + + SAL+ MY+K G I
Sbjct: 498 KEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNI 557

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           + A +VF   +++++ +W SMI GYG++G+  +ALE+F +MQ   +  + VTF+G L+AC
Sbjct: 558 ESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTAC 617

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            HAGLV++G + F  M +DY +  K+EHY+CMVDL  RAG  ++A+  +  MP   +  +
Sbjct: 618 THAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTI 677

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W  LL++CR+H ++E+  +AA ++  L  ND  G YV LSN  A AG W+    +R+ M 
Sbjct: 678 WRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVG-YVLLSNIHAVAGNWEEKAHVRKLMD 736

Query: 481 LRGVLKDTGCSWV 493
            R V K+ GCSW+
Sbjct: 737 ERKVKKEAGCSWI 749



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 191/381 (50%), Gaps = 21/381 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H    K+G   + ++   L+ +++K    +    +FDE+  + + ++  +++GY +
Sbjct: 123 GRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYAR 182

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  +E + L+ ++   G  P+G+TF+ +L A     ++  +    G  VHA I+K   +
Sbjct: 183 NGLNDEVIHLINQMQMEGVNPNGFTFATVLGA----LADESIIEG-GVQVHAMIVKNGFE 237

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               +  AL+  Y+K      A  VFD M+ ++ +    MI G+ + GF  +  ++F + 
Sbjct: 238 FTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRM 297

Query: 244 VEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKN--VFFEDVKLGSALVDMYAKC 297
               + +   +    ++ + + ++ L    ++HC ++KN   F +D++  +AL+  Y+KC
Sbjct: 298 RLAGVKLSRTVF-CTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIR--TALMVTYSKC 354

Query: 298 GKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
             +D+A ++F       NV TWT+MI G+ +N N  +A++LFC M    V+PN+ T+   
Sbjct: 355 SSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTV 414

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           L+    + L     +I ++    Y   P +     ++D   + G++ ++ +    +P K 
Sbjct: 415 LAGKPSSLLSQLHAQIIKAY---YEKVPSVA--TALLDAYVKTGNVVESARVFYSIPAK- 468

Query: 417 NSDVWAALLSSCRLHDDVEMA 437
           +   W+A+L+      D E A
Sbjct: 469 DIVAWSAMLTGLAQTRDSEKA 489



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 152/344 (44%), Gaps = 33/344 (9%)

Query: 97  KYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAS 156
           +YA Q+FDE P + +S YN ++  + +N    E+L L + L SSG   DG T S  LK  
Sbjct: 55  RYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVC 114

Query: 157 TCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216
                 V   + +GR VH Q LK     D  + T+LVD Y+K       R +FD M  KN
Sbjct: 115 -----GVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKN 169

Query: 217 VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN----AMIEGYSISIETARKALEVH 272
           V+  TS++SG+   G  ++   +  + ++ + V  N    A + G           ++VH
Sbjct: 170 VVSWTSLLSGYARNGLNDEVIHLINQ-MQMEGVNPNGFTFATVLGALADESIIEGGVQVH 228

Query: 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPN 332
             ++KN F     + +AL+ MY K   + DA  VFD M  ++  TW  MI GY   G   
Sbjct: 229 AMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYL 288

Query: 333 QALELFCMMQECCVQPNYVTFLGALSACG-----------HAGLVDKGREIFESMERDYS 381
           +  ++F  M+   V+ +   F  AL  C            H G+V  G E  + +     
Sbjct: 289 EGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRT--- 345

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
                   A MV    +  S+++A K         N   W A++
Sbjct: 346 --------ALMVT-YSKCSSVDEAFKLFSMADAAHNVVTWTAMI 380



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 52/95 (54%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G +IHA   K+G      +S  LL ++ K G ++ A ++F    +R + ++N MI GY 
Sbjct: 524 HGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYG 583

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           ++G  +++L + + + + G   D  TF  +L A T
Sbjct: 584 QHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACT 618


>gi|242076082|ref|XP_002447977.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
 gi|241939160|gb|EES12305.1| hypothetical protein SORBIDRAFT_06g019190 [Sorghum bicolor]
          Length = 772

 Score =  261 bits (666), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 162/447 (36%), Positives = 244/447 (54%), Gaps = 20/447 (4%)

Query: 57  NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNY 116
           NS     G   HA I K     N  +   L+ ++ K   +  AG++F  L QR   ++N 
Sbjct: 332 NSGNVHGGKAFHAVIMKRNFGDNVLVGNALISMYGKFELVDNAGRVFRLLHQRDADSWNL 391

Query: 117 MIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF-----SMILKASTCCRSNVPLPRNLGR 171
           MI GY K G   + L L R++    +  D Y F     S++   S+C R    +   LGR
Sbjct: 392 MIVGYCKAGCDVKCLELYREM----QFRDTYEFLCDANSLVSAISSCSR---LVELRLGR 444

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM-LEKNVICSTSMISGFMSQ 230
             H   +K  +  D  +   L+  Y + GK  +A  +F +  L+ +V+   ++IS +   
Sbjct: 445 SAHCYSIKHWLDEDSSVANVLIGMYGRCGKFDHACKIFGLAKLKGDVVTWNTLISSYAHL 504

Query: 231 GFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFEDVKL 286
           G    A  ++ + + + +   N+      IS      ALE    +H  + +  +  DV +
Sbjct: 505 GHSNTAVSLYDQMLTEGLTP-NSTTLITVISACANLVALERGEKIHSYVKEMGWDYDVSI 563

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
            +AL+DMYAKCG++  ARR+FD M Q +V  W  MI GYG +G   QALELF  M+   +
Sbjct: 564 NTALIDMYAKCGQLGTARRIFDSMLQHDVVAWNVMISGYGMHGEAKQALELFGKMEGGSI 623

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
           +PN VTFL  LSAC H+GL+++GR++F  M + YS++P ++HYACMVDLLG++G L++A 
Sbjct: 624 KPNGVTFLAILSACCHSGLLEEGRQLFTRMGK-YSLEPNLKHYACMVDLLGKSGHLQEAE 682

Query: 407 KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
             VL MP +P+  +W  LLS+C+LHDD EM    A + F  +A +  G Y+ +SN+  +A
Sbjct: 683 DMVLAMPVEPDGGIWGTLLSACKLHDDFEMGLRIAKKAFASDAENE-GYYILISNSYGSA 741

Query: 467 GKWDSVTELREKMKLRGVLKDTGCSWV 493
            KWD + +LRE MK  GV K  G S V
Sbjct: 742 KKWDEIEKLREAMKNHGVQKGAGWSAV 768



 Score = 88.2 bits (217), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 172/398 (43%), Gaps = 49/398 (12%)

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           L++HA    +G+    +I  KL+  +   G    A   F   P+     +N +I  +   
Sbjct: 29  LRVHALAVTSGLSQRPDIVAKLVSAYSSAGRPGLAALAFSACPRPDAFLWNSLIRTHHCA 88

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
                +L+  R++++S  RP  +T  +   A+            +G  VHA  ++  + A
Sbjct: 89  SDFVAALNAHRRMLASSARPSPFTVPLAASAAA-----ELGALGVGASVHAYCVRYGLLA 143

Query: 185 DD----VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
            D     + ++LV  Y + G    A  +F+ M E++V+  T+++SG +  G   D     
Sbjct: 144 VDGGSVAVPSSLVYMYARCGVVRDAVKLFEEMRERDVVAWTAVVSGCVRNGECGDG---L 200

Query: 241 RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFED--VKLG--------SAL 290
           R  VE   +  +      S ++E+  +A  V  +L          VK+G        SAL
Sbjct: 201 RYLVEMVRLAGDGKARPNSRTMESGLEACGVLDELNSGRCLHGYAVKVGVGDSPMVISAL 260

Query: 291 VDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY 350
             MY+KC   +DA  +F  + +K+V +WTS+I  Y   G   +A+ELF  M E  +QP+ 
Sbjct: 261 FSMYSKCHSTEDACSLFPELPEKDVVSWTSLIGIYCWRGLIREAMELFQEMMESGLQPDD 320

Query: 351 VTFLGALSACGHAGLVDKGREIFES-MERDY-----------SMKPKMEHYACMVDLLGR 398
           V     LS  G++G V  G+      M+R++           SM  K E    +VD  GR
Sbjct: 321 VLVSCLLSGLGNSGNVHGGKAFHAVIMKRNFGDNVLVGNALISMYGKFE----LVDNAGR 376

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALLSS-CRLHDDVE 435
                     V  +  + ++D W  ++   C+   DV+
Sbjct: 377 ----------VFRLLHQRDADSWNLMIVGYCKAGCDVK 404


>gi|357151953|ref|XP_003575959.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14850-like [Brachypodium distachyon]
          Length = 689

 Score =  261 bits (666), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 147/437 (33%), Positives = 240/437 (54%), Gaps = 15/437 (3%)

Query: 64  GLKIHAHITKTGVKP-NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G +IHA   + G  P +  +S   + ++ K G L  A ++F+E+P R + A+N ++   +
Sbjct: 132 GPQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAVMTNAV 191

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            +G+  E+      L  +G  P+  +      A   C   + L  +LG   H  ++ C  
Sbjct: 192 IDGRPLETFKAYFGLREAGGMPNVVSVCAFFNA---CAGAMFL--SLGEQFHGFVVTCGF 246

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-- 240
             D  +  A+VD Y K      AR VFD M  +N +   SMI  +   G  EDA  ++  
Sbjct: 247 DMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDALAVYMG 306

Query: 241 -RKTVEK--DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
            R T E+  D +V + +     +      +AL  H   +++    ++ + SALVDMY KC
Sbjct: 307 ARNTGEEPTDFMVSSVLTTCAGLLGLNFGRAL--HAVAVRSCIDANIFVASALVDMYGKC 364

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF-CMMQECCVQPNYVTFLGA 356
           G ++DA +VF  M ++N+ TW +MI GY   G+   AL +F  M++     PN++T +  
Sbjct: 365 GGVEDAEQVFLDMPERNLVTWNAMIGGYAHIGDAQNALAVFDAMIRSGGTSPNHITLVNV 424

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           ++AC   GL   G E+F++M   + ++P+ EHYAC+VDLLGRAG  E+A + +  MP +P
Sbjct: 425 ITACSRGGLTKDGYELFDTMRERFGVEPRTEHYACVVDLLGRAGMEERAYEIIQRMPMRP 484

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
           +  VW ALL +C++H   E+  IA+ ++F+L+  D  G +V LSN LA+AG+W   T++R
Sbjct: 485 SISVWGALLGACKMHGKTELGRIASEKLFELDPQDS-GNHVLLSNMLASAGRWAEATDVR 543

Query: 477 EKMKLRGVLKDTGCSWV 493
           ++MK  G+ K+ GCSW+
Sbjct: 544 KEMKNVGIKKEPGCSWI 560



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 167/390 (42%), Gaps = 24/390 (6%)

Query: 48  LPSALQHYINSDTPFYGLKIHAH---ITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           L +A +  I+S +P  G   HA    +   G+ P   I   L+ L+ K      A     
Sbjct: 12  LGAAFEAAISSRSPRLGRAAHARALRLLSPGLPPF--ICAHLVNLYSKLDLPAAAASALA 69

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP 164
             P  T+ ++   I+G  ++ +   +LS    ++  G RP+ +TF    KA+ C     P
Sbjct: 70  SDPNPTVVSFTAFISGAAQHARPLAALSAFAAMLRVGLRPNDFTFPSAFKAAACAP---P 126

Query: 165 LPRNLGRMVHAQILKCD-VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
               +G  +HA  L+   +  D  +  A +D Y K G    AR +F+ M  +NVI   ++
Sbjct: 127 RCSTVGPQIHALALRFGYLPGDPFVSCAAMDMYFKTGCLGLARRLFEEMPNRNVIAWNAV 186

Query: 224 ISGFMSQGF-VEDAEEIF-------RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQL 275
           ++  +  G  +E  +  F          V      +NA      +S+        V C  
Sbjct: 187 MTNAVIDGRPLETFKAYFGLREAGGMPNVVSVCAFFNACAGAMFLSLGEQFHGFVVTCG- 245

Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
               F  DV + +A+VD Y KC     AR VFD M+ +N  +W SMI  Y ++G    AL
Sbjct: 246 ----FDMDVSVSNAMVDFYGKCRCAGKARAVFDGMRVRNSVSWCSMIVAYAQHGAEEDAL 301

Query: 336 ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDL 395
            ++   +    +P        L+ C     ++ GR +     R   +   +   + +VD+
Sbjct: 302 AVYMGARNTGEEPTDFMVSSVLTTCAGLLGLNFGRALHAVAVRS-CIDANIFVASALVDM 360

Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
            G+ G +E A +  L+MPE+ N   W A++
Sbjct: 361 YGKCGGVEDAEQVFLDMPER-NLVTWNAMI 389



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/102 (27%), Positives = 55/102 (53%), Gaps = 3/102 (2%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G  +HA   ++ +  N  ++  L+ ++ KCG ++ A Q+F ++P+R L  +N MI GY 
Sbjct: 334 FGRALHAVAVRSCIDANIFVASALVDMYGKCGGVEDAEQVFLDMPERNLVTWNAMIGGYA 393

Query: 123 KNGQVEESLSLVRKLV-SSGERPDGYTFSMILKASTCCRSNV 163
             G  + +L++   ++ S G  P+  T   ++ A  C R  +
Sbjct: 394 HIGDAQNALAVFDAMIRSGGTSPNHITLVNVITA--CSRGGL 433


>gi|345505204|gb|AEN99826.1| chlororespiratory reduction 4, partial [Aethionema cordifolium]
          Length = 587

 Score =  261 bits (666), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 150/473 (31%), Positives = 246/473 (52%), Gaps = 62/473 (13%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH  + KTG+  +  +   L+ L+LKCG L +A Q+FD +PQR   +YN MI GY+K
Sbjct: 118 GMQIHGFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVK 177

Query: 124 NGQVEESLSL-------VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
            G +  +  L       ++ L+S      GY       A T    N+           A 
Sbjct: 178 CGLIGSARELFDLMPKEMKNLISWNSMISGY-------AQTSDGVNI-----------AS 219

Query: 177 ILKCDVKADDVL-YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
            L  ++   D++ + +L+D YVK G+   A+ +F +M  ++V+   +MI G+   GFV  
Sbjct: 220 KLFAEMPEKDLISWNSLIDGYVKHGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHK 279

Query: 236 AEEIFRKTVEKDIVVYNAMIEGY---------------------------------SISI 262
           A+ +F +   +D+V YN+M+ GY                                 S   
Sbjct: 280 AKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFNNMEKDSHLSPDETTLVIVLSAIA 339

Query: 263 ETAR--KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
           +  R  KA+ ++  +++  F    KLG AL+DM++KCG I  A  VF+ ++ K++  W +
Sbjct: 340 QLGRLSKAMSMNKYIVEKSFPLGGKLGVALIDMHSKCGSIQQAISVFEGIKNKSIDHWNA 399

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
           MI G   +G+   A ++   ++ C ++P+ +TF+G L+AC H+GLV +G   FE M R +
Sbjct: 400 MIGGLAIHGHGELAFDMLMQIERCSIKPDDITFIGVLNACSHSGLVKEGLLSFELMRRKH 459

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIA 440
            ++P+++HY C+VD+L R+GS+E A   + +MP +PN  +W   L +CR   + E+  + 
Sbjct: 460 KIEPRLQHYGCIVDILSRSGSIELAKHLIEDMPMEPNDVIWRTFLIACRNRKEFEIGELV 519

Query: 441 ANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           A  +  L A   P +YV LSN  A+ G W  V  +R  MK R + K  GCSW+
Sbjct: 520 AKHLI-LQAGYNPSSYVLLSNMYASLGMWKDVRRVRMMMKQRKLHKIPGCSWI 571



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 107/471 (22%), Positives = 211/471 (44%), Gaps = 54/471 (11%)

Query: 66  KIHAHITKTGVKPNTNISIKLLIL-----------HLKCGALKYAGQMFDELPQRTLSAY 114
           +IHA + KTG   N+N++ ++++              +C    Y    F          +
Sbjct: 8   QIHARLIKTGFIQNSNLTTRIVLAFAASRRPYLAEFARCVFQNYHSCSFAHGEVEDPFLW 67

Query: 115 NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH 174
           N +I  +      + +L     ++ +G   D ++ S++LKA  C R         G  +H
Sbjct: 68  NAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKA--CSRLGFVQE---GMQIH 122

Query: 175 AQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVE 234
             + K  + +D  L   L+  Y+K G   +AR +FD M +++ +   SMI G++  G + 
Sbjct: 123 GFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQRDSVSYNSMIDGYVKCGLIG 182

Query: 235 DAEEIFRKTVE--KDIVVYNAMIEGYSISIETARKALEVHCQL----------------- 275
            A E+F    +  K+++ +N+MI GY+ + +    A ++  ++                 
Sbjct: 183 SARELFDLMPKEMKNLISWNSMISGYAQTSDGVNIASKLFAEMPEKDLISWNSLIDGYVK 242

Query: 276 ------IKNVFF----EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
                  K++F+     DV   + ++D YAK G +  A+ +FD M  ++V  + SM+ GY
Sbjct: 243 HGRMEDAKDLFYVMPRRDVVTWATMIDGYAKLGFVHKAKTLFDQMPHRDVVAYNSMMAGY 302

Query: 326 GKNGNPNQALELFCMMQ-ECCVQPNYVTFLGALSACGHAGLVDKGREIFESM-ERDYSMK 383
            +N    +ALE+F  M+ +  + P+  T +  LSA    G + K   + + + E+ + + 
Sbjct: 303 VQNKYHMEALEIFNNMEKDSHLSPDETTLVIVLSAIAQLGRLSKAMSMNKYIVEKSFPLG 362

Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANE 443
            K+     ++D+  + GS++QA+  V E  +  + D W A++    +H   E+A     +
Sbjct: 363 GKLG--VALIDMHSKCGSIQQAIS-VFEGIKNKSIDHWNAMIGGLAIHGHGELAFDMLMQ 419

Query: 444 IFKLNANDRPGAYVALSNTLAAAGKWD----SVTELREKMKLRGVLKDTGC 490
           I + +       ++ + N  + +G       S   +R K K+   L+  GC
Sbjct: 420 IERCSIKPDDITFIGVLNACSHSGLVKEGLLSFELMRRKHKIEPRLQHYGC 470



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 12/161 (7%)

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK---IDDARRVFD--------HMQQKN 314
           R+  ++H +LIK  F ++  L + +V  +A   +    + AR VF         H + ++
Sbjct: 4   RRCEQIHARLIKTGFIQNSNLTTRIVLAFAASRRPYLAEFARCVFQNYHSCSFAHGEVED 63

Query: 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374
            F W ++I  +    +P +AL  FC+M E  V  +  +    L AC   G V +G +I  
Sbjct: 64  PFLWNAVIKSHSHGVDPKRALIWFCLMLENGVSVDKFSLSLVLKACSRLGFVQEGMQI-H 122

Query: 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
              R   +   +    C++ L  + G L  A +    MP++
Sbjct: 123 GFLRKTGIWSDLFLQNCLIGLYLKCGCLGFARQIFDRMPQR 163


>gi|224096249|ref|XP_002310592.1| predicted protein [Populus trichocarpa]
 gi|222853495|gb|EEE91042.1| predicted protein [Populus trichocarpa]
          Length = 747

 Score =  261 bits (666), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 161/509 (31%), Positives = 263/509 (51%), Gaps = 74/509 (14%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G K+H+ + K G+     ++  LL ++ K G LK A  +FD +  R  S++N MI+ ++ 
Sbjct: 126 GKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMN 185

Query: 124 NGQVEESLSLV-----RKLVS-----SGERPDGYT------FSMILKASTCCRSNVPLPR 167
            G+V+ +L+       R +VS     +G    G+       FS ILK ++       L  
Sbjct: 186 CGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKPDRFSLAS 245

Query: 168 NL-----------GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM--MLE 214
            L           G+ +H  I++    A   +  AL+  Y K G    AR + +   + +
Sbjct: 246 ALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAKSGGVEIARRIIEQSGISD 305

Query: 215 KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY---------------- 258
            +VI  T++++G++  G +  A +IF    + D+V + AMI GY                
Sbjct: 306 LDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIVGYVQNGLNNDAIEVFKTM 365

Query: 259 ------------------SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
                             S S+ +     ++H   I++       +G+AL  MYAK G I
Sbjct: 366 VSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEALSPSVGNALTTMYAKAGSI 425

Query: 301 DDARRVFDHMQQ-KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           + AR+VF+ ++Q ++  +WTSMI    ++G   +A+ELF  M    ++P+++T++G LSA
Sbjct: 426 NGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVLSA 485

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H GLV++GR  F+ M+  + + P + HYACMVDL GRAG L++A KFV  MP +P+  
Sbjct: 486 CTHGGLVEQGRSYFDLMKNVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVI 545

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
            W +LLSSC+++ +V++A +AA  +  +  N+  GAY AL+N  ++ GKWD   ++R+ M
Sbjct: 546 AWGSLLSSCKVYKNVDLAKVAAERLLLIEPNN-SGAYSALANVYSSCGKWDDAAKIRKLM 604

Query: 480 KLRGVLKDTGCSWV---------GTESGL 499
           K RGV K+ G SWV         G E GL
Sbjct: 605 KARGVKKEQGLSWVQIQNKTHVFGVEDGL 633



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 101/409 (24%), Positives = 182/409 (44%), Gaps = 76/409 (18%)

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           K G L+ A Q+FD +P R   ++  +I GY + G+ E+++ +   +V     P  +T + 
Sbjct: 53  KQGKLEKAHQVFDLIPVRDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTN 112

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           +L  ++C  +     R +G+ VH+ ++K  + A   +  +L++ Y K G    A++VFD 
Sbjct: 113 VL--ASCAATG---SRGIGKKVHSFVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDR 167

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEG-------------- 257
           M  +N     +MIS  M+ G V+ A   F    E+DIV +N+MI G              
Sbjct: 168 MKLRNTSSWNAMISLHMNCGRVDLALAQFELLSERDIVSWNSMIAGCNQHGFDNEALQFF 227

Query: 258 YSISIETARK---------------------ALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
            SI  +T+ K                       ++H  +++ +F     +G+AL+ MYAK
Sbjct: 228 SSILKDTSLKPDRFSLASALSACANLEKLSFGKQIHGYIVRTMFDASGAVGNALISMYAK 287

Query: 297 CGKIDDARR---------------------------------VFDHMQQKNVFTWTSMID 323
            G ++ ARR                                 +F+ ++  +V  WT+MI 
Sbjct: 288 SGGVEIARRIIEQSGISDLDVIAFTALLNGYVKLGDITPARQIFNSLKDPDVVAWTAMIV 347

Query: 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD-YSM 382
           GY +NG  N A+E+F  M     +PN  T    LSA      ++ G++I  S  R   ++
Sbjct: 348 GYVQNGLNNDAIEVFKTMVSEGPRPNSFTLAAMLSASSSVTSLNHGKQIHASAIRSGEAL 407

Query: 383 KPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
            P + +   +  +  +AGS+  A K    + +  ++  W +++ +   H
Sbjct: 408 SPSVGN--ALTTMYAKAGSINGARKVFNLLRQNRDTVSWTSMIMALAQH 454



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 103/231 (44%), Gaps = 38/231 (16%)

Query: 188 LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKD 247
           L   L++ Y K G    A  +F+ M  K      +++SG+  QG +E A ++F     +D
Sbjct: 12  LMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPVRD 71

Query: 248 IVVYNAMIEGYS----------ISIETARKAL------------------------EVHC 273
            V +  +I GY+          I ++  +  +                        +VH 
Sbjct: 72  SVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKVHS 131

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
            ++K      V + ++L++MYAK G +  A+ VFD M+ +N  +W +MI  +   G  + 
Sbjct: 132 FVVKLGLHACVPVANSLLNMYAKTGDLKMAKVVFDRMKLRNTSSWNAMISLHMNCGRVDL 191

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP 384
           AL  F ++ E     + V++   ++ C   G  ++  + F S+ +D S+KP
Sbjct: 192 ALAQFELLSE----RDIVSWNSMIAGCNQHGFDNEALQFFSSILKDTSLKP 238



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 124/292 (42%), Gaps = 66/292 (22%)

Query: 35  NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           N  +L+  L+A+S  ++L H         G +IHA   ++G   + ++   L  ++ K G
Sbjct: 373 NSFTLAAMLSASSSVTSLNH---------GKQIHASAIRSGEALSPSVGNALTTMYAKAG 423

Query: 95  ALKYAGQMFDELPQ-RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
           ++  A ++F+ L Q R   ++  MI    ++G  EE++ L  ++++ G +PD  T+  +L
Sbjct: 424 SINGARKVFNLLRQNRDTVSWTSMIMALAQHGLGEEAIELFEQMLTLGIKPDHITYVGVL 483

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
            A T                                         GG     R  FD+M 
Sbjct: 484 SACT----------------------------------------HGGLVEQGRSYFDLMK 503

Query: 214 EKNVICST-----SMISGFMSQGFVEDAEEIFRKT-VEKDIVVYNAMIEGYSI--SIETA 265
             + I  T      M+  F   G +++A +      +E D++ + +++    +  +++ A
Sbjct: 504 NVHKIDPTLSHYACMVDLFGRAGLLQEAYKFVENMPMEPDVIAWGSLLSSCKVYKNVDLA 563

Query: 266 RKALEVHCQLIKNVFFEDVKLG--SALVDMYAKCGKIDDARRVFDHMQQKNV 315
           + A E      + +  E    G  SAL ++Y+ CGK DDA ++   M+ + V
Sbjct: 564 KVAAE------RLLLIEPNNSGAYSALANVYSSCGKWDDAAKIRKLMKARGV 609



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 41/180 (22%), Positives = 75/180 (41%), Gaps = 45/180 (25%)

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ---------- 333
           V L + L+++YAK G   DA  +F+ M  K  F+W +++ GY K G   +          
Sbjct: 10  VYLMNNLMNLYAKTGFHLDAHDLFNEMPVKTTFSWNTILSGYAKQGKLEKAHQVFDLIPV 69

Query: 334 ---------------------ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
                                A+++F  M +  V P   T    L++C   G    G+++
Sbjct: 70  RDSVSWTTIIVGYNQMGRFEDAIKIFVDMVKDKVLPTQFTLTNVLASCAATGSRGIGKKV 129

Query: 373 FESMERDYSMKPKMEHYAC------MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
                  +S   K+  +AC      ++++  + G L+ A K V +  +  N+  W A++S
Sbjct: 130 -------HSFVVKLGLHACVPVANSLLNMYAKTGDLKMA-KVVFDRMKLRNTSSWNAMIS 181


>gi|15232648|ref|NP_190263.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207666|sp|Q9STF3.1|PP265_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g46790, chloroplastic; AltName: Full=Protein
           CHLORORESPIRATORY REDUCTION 2; Flags: Precursor
 gi|5541680|emb|CAB51186.1| putative protein [Arabidopsis thaliana]
 gi|110741961|dbj|BAE98921.1| hypothetical protein [Arabidopsis thaliana]
 gi|332644684|gb|AEE78205.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 657

 Score =  261 bits (666), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 144/437 (32%), Positives = 242/437 (55%), Gaps = 11/437 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
            L++H HI   G   +  ++ KL+ ++   G++ YA ++FD+  +RT+  +N +      
Sbjct: 96  ALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTL 155

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL-GRMVHAQILKCDV 182
            G  EE L L  K+   G   D +T++ +LKA  C  S   +   + G+ +HA + +   
Sbjct: 156 AGHGEEVLGLYWKMNRIGVESDRFTYTYVLKA--CVASECTVNHLMKGKEIHAHLTRRGY 213

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            +   + T LVD Y + G   YA  VF  M  +NV+  ++MI+ +   G   +A   FR+
Sbjct: 214 SSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFRE 273

Query: 243 TVEK------DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
            + +      + V   ++++  + S+    +   +H  +++      + + SALV MY +
Sbjct: 274 MMRETKDSSPNSVTMVSVLQACA-SLAALEQGKLIHGYILRRGLDSILPVISALVTMYGR 332

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CGK++  +RVFD M  ++V +W S+I  YG +G   +A+++F  M      P  VTF+  
Sbjct: 333 CGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSV 392

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           L AC H GLV++G+ +FE+M RD+ +KP++EHYACMVDLLGRA  L++A K V +M  +P
Sbjct: 393 LGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEP 452

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
              VW +LL SCR+H +VE+A  A+  +F L   +  G YV L++  A A  WD V  ++
Sbjct: 453 GPKVWGSLLGSCRIHGNVELAERASRRLFALEPKN-AGNYVLLADIYAEAQMWDEVKRVK 511

Query: 477 EKMKLRGVLKDTGCSWV 493
           + ++ RG+ K  G  W+
Sbjct: 512 KLLEHRGLQKLPGRCWM 528


>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 708

 Score =  261 bits (666), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 152/443 (34%), Positives = 243/443 (54%), Gaps = 22/443 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G   H  + K+G++ ++ +   LL +++KCG +  A ++F+E     L  +  MI GY  
Sbjct: 273 GKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTH 332

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL--GRMVHAQILKCD 181
           NG V E+LSL +K+   G +P+  T + +L       S   L  NL  GR +H   +K  
Sbjct: 333 NGSVNEALSLFQKMSGVGIKPNCVTIASVL-------SGCGLVGNLELGRSIHGLSIKVG 385

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +  D  +  ALV  Y K  +   A+ VF+M  EK+++   S+ISGF   G + +A  +F 
Sbjct: 386 I-WDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFH 444

Query: 242 KTVEKDIV--------VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDM 293
           +   + ++        +++A     S++I ++  A  V    + +     V +G+AL+D 
Sbjct: 445 RMNTESVMPNGVTVASLFSACASLGSLAIGSSLHAYSVKLGFLAS---SSVHVGTALLDF 501

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           YAKCG  + AR +FD +++KN  TW++MI GYGK G+   +LELF  M +   +PN  TF
Sbjct: 502 YAKCGDAESARLIFDTIEEKNTITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTF 561

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
              LSAC H G+V++G++ F SM +DY+  P  +HY CMVD+L RAG LEQAL  + +MP
Sbjct: 562 TSVLSACSHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMP 621

Query: 414 EKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473
            +P+   + A L  C +H   ++  I   ++  L+ +D    YV +SN  A+ G+W    
Sbjct: 622 IQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLHPDD-ASYYVLVSNLYASDGRWSQAK 680

Query: 474 ELREKMKLRGVLKDTGCSWVGTE 496
           E+R  MK RG+ K  G S + +E
Sbjct: 681 EVRNLMKQRGLSKIAGHSIMESE 703



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 127/466 (27%), Positives = 219/466 (46%), Gaps = 62/466 (13%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G KIH  I K     N  ++  LL ++ KCG +K + ++F+++  R +  +  MIAGY+K
Sbjct: 173 GKKIHCQIVKVPSFDNVVLT-GLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVK 231

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N   EE L L  ++  +    + YT+  ++ A T  R+      + G+  H  ++K  ++
Sbjct: 232 NDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRA-----LHQGKWFHGCLIKSGIE 286

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               L T+L+D YVK G  S AR VF+     +++  T+MI G+   G V +A  +F+K 
Sbjct: 287 LSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKM 346

Query: 244 ----VEKDIVVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
               ++ + V   +++ G  +  ++E  R    +H   IK V   D  + +ALV MYAKC
Sbjct: 347 SGVGIKPNCVTIASVLSGCGLVGNLELGRS---IHGLSIK-VGIWDTNVANALVHMYAKC 402

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
            +  DA+ VF+   +K++  W S+I G+ +NG+ ++AL LF  M    V PN VT     
Sbjct: 403 YQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLF 462

Query: 358 SACG-----------HA--------------------------GLVDKGREIFESMERDY 380
           SAC            HA                          G  +  R IF+++E   
Sbjct: 463 SACASLGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESARLIFDTIEEKN 522

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEM---PEKPNSDVWAALLSSCRLHDDVEMA 437
           ++      ++ M+   G+ G  + +L+   EM    +KPN   + ++LS+C     V   
Sbjct: 523 TIT-----WSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTSVLSACSHTGMVNEG 577

Query: 438 NIAANEIFK-LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
               + ++K  N       Y  + + LA AG+ +   ++ EKM ++
Sbjct: 578 KKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQ 623



 Score =  146 bits (369), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 103/309 (33%), Positives = 156/309 (50%), Gaps = 11/309 (3%)

Query: 68  HAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV 127
           H  +T  G+  + +I+ KL+ L+   G  K A  +FD++P+     +  ++  Y  N + 
Sbjct: 76  HGVLTGNGLMGDISIATKLVSLYGSFGYTKDARLVFDQIPEPDFYLWKVILRCYCLNNES 135

Query: 128 EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV 187
            E +     L+  G   D   FS  LKA T     V    N G+ +H QI+K     D+V
Sbjct: 136 FEVIKFYDLLMKHGFGYDDIVFSKALKACT----EVQDLDN-GKKIHCQIVKVP-SFDNV 189

Query: 188 LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKD 247
           + T L+D Y K G+   +  VF+ +  +NV+C TSMI+G++     E+   +F +  E  
Sbjct: 190 VLTGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENS 249

Query: 248 IVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
            V+ N    G  +   T  +AL      H  LIK+       L ++L+DMY KCG I +A
Sbjct: 250 -VLGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNA 308

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
           RRVF+     ++  WT+MI GY  NG+ N+AL LF  M    ++PN VT    LS CG  
Sbjct: 309 RRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCGLV 368

Query: 364 GLVDKGREI 372
           G ++ GR I
Sbjct: 369 GNLELGRSI 377



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 80/304 (26%), Positives = 135/304 (44%), Gaps = 39/304 (12%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM-- 228
           R  H  +    +  D  + T LV  Y   G T  AR+VFD + E +      ++  +   
Sbjct: 73  RQAHGVLTGNGLMGDISIATKLVSLYGSFGYTKDARLVFDQIPEPDFYLWKVILRCYCLN 132

Query: 229 --SQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
             S   ++  + + +     D +V++  ++  +  ++      ++HCQ++K   F++V L
Sbjct: 133 NESFEVIKFYDLLMKHGFGYDDIVFSKALKACT-EVQDLDNGKKIHCQIVKVPSFDNVVL 191

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
            + L+DMYAKCG+I  + +VF+ +  +NV  WTSMI GY KN    + L LF  M+E  V
Sbjct: 192 -TGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYEEGLVLFNRMRENSV 250

Query: 347 QPNYVTFLGALSACG-----------HAGLVDKGREIFESMER----------DYSMKPK 385
             N  T+   + AC            H  L+  G E+   +            D S   +
Sbjct: 251 LGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLVTSLLDMYVKCGDISNARR 310

Query: 386 MEHYACMVDLL---------GRAGSLEQALKFVLEMPE---KPNSDVWAALLSSCRLHDD 433
           + +    VDL+            GS+ +AL    +M     KPN    A++LS C L  +
Sbjct: 311 VFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNCVTIASVLSGCGLVGN 370

Query: 434 VEMA 437
           +E+ 
Sbjct: 371 LELG 374


>gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g02980-like [Glycine max]
          Length = 609

 Score =  261 bits (666), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 149/404 (36%), Positives = 226/404 (55%), Gaps = 11/404 (2%)

Query: 94  GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
            ++ +A +MFD++PQ  +  +N M  GY +      ++ L  +++ SG  PD YTFS +L
Sbjct: 83  ASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRAILLCSQVLCSGLLPDDYTFSSLL 142

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
           KA  C R         G+ +H   +K  V  +  +   L++ Y        AR VFD + 
Sbjct: 143 KA--CARLKA---LEEGKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIG 197

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE--- 270
           E  V+   ++I+         +A  +FR+  E  +   +  +   ++S      AL+   
Sbjct: 198 EPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDVTML-VALSSCALLGALDLGR 256

Query: 271 -VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
            +H  + KN F + VK+ +AL+DMYAKCG +DDA  VF  M +++   W++MI  Y  +G
Sbjct: 257 WIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHG 316

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
           + +QA+ +   M++  VQP+ +TFLG L AC H GLV++G E F SM  +Y + P ++HY
Sbjct: 317 HGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHY 376

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
            CM+DLLGRAG LE+A KF+ E+P KP   +W  LLSSC  H +VEMA +    IF+L+ 
Sbjct: 377 GCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQRIFELD- 435

Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           +   G YV LSN  A  G+WD V  LR+ M  +G LK  GCS +
Sbjct: 436 DSHGGDYVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCSSI 479



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/276 (22%), Positives = 121/276 (43%), Gaps = 10/276 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H    K GV  N  +   L+ ++  C  +  A ++FD++ +  + AYN +I    +
Sbjct: 154 GKQLHCLAVKLGVGDNMYVCPTLINMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCAR 213

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N +  E+L+L R+L  SG +P   T  M++  S+C         +LGR +H  + K    
Sbjct: 214 NSRPNEALALFRELQESGLKPTDVT--MLVALSSCALLGA---LDLGRWIHEYVKKNGFD 268

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK- 242
               + TAL+D Y K G    A  VF  M  ++    ++MI  + + G    A  + R+ 
Sbjct: 269 QYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYATHGHGSQAISMLREM 328

Query: 243 ---TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               V+ D + +  ++   S +          H    +      +K    ++D+  + G+
Sbjct: 329 KKAKVQPDEITFLGILYACSHTGLVEEGYEYFHSMTHEYGIVPSIKHYGCMIDLLGRAGR 388

Query: 300 IDDARRVFDHMQQKNV-FTWTSMIDGYGKNGNPNQA 334
           +++A +  D +  K     W +++     +GN   A
Sbjct: 389 LEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMA 424



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 44/185 (23%), Positives = 89/185 (48%), Gaps = 5/185 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH ++ K G      ++  L+ ++ KCG+L  A  +F ++P+R   A++ MI  Y  
Sbjct: 255 GRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDMPRRDTQAWSAMIVAYAT 314

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G   +++S++R++  +  +PD  TF  IL A     S+  L        H+   +  + 
Sbjct: 315 HGHGSQAISMLREMKKAKVQPDEITFLGILYAC----SHTGLVEEGYEYFHSMTHEYGIV 370

Query: 184 ADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
                Y  ++D   + G+   A + + ++ ++   I   +++S   S G VE A+ + ++
Sbjct: 371 PSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSSHGNVEMAKLVIQR 430

Query: 243 TVEKD 247
             E D
Sbjct: 431 IFELD 435


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  261 bits (666), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 149/464 (32%), Positives = 249/464 (53%), Gaps = 40/464 (8%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G K+H H+ K G+  N  +   L+ ++  CG +  A  +FD   +  + ++N MI+GY +
Sbjct: 154 GKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNR 213

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
             + EES+ L+ ++  +   P   T  ++L A +  +      ++L + VH  + +C  +
Sbjct: 214 MKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKD-----KDLCKRVHEYVSECKTE 268

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               L  ALV++Y   G+   A  +F  M  ++VI  TS++ G++ +G ++ A   F + 
Sbjct: 269 PSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQM 328

Query: 244 VEKDIVVYNAMIEGY------SISIETARK------------------------ALEV-- 271
             +D + +  MI+GY      + S+E  R+                        +LE+  
Sbjct: 329 PVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGE 388

Query: 272 --HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
                + KN    DV +G+AL+DMY KCG  + A++VF  M Q++ FTWT+M+ G   NG
Sbjct: 389 WIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNG 448

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
              +A+++F  MQ+  +QP+ +T+LG LSAC H+G+VD+ R+ F  M  D+ ++P + HY
Sbjct: 449 QGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHY 508

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
            CMVD+LGRAG +++A + + +MP  PNS VW ALL + RLH+D  MA +AA +I +L  
Sbjct: 509 GCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEP 568

Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            D    Y  L N  A   +W  + E+R K+    + K  G S +
Sbjct: 569 -DNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLI 611



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/398 (25%), Positives = 184/398 (46%), Gaps = 46/398 (11%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLK--CGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           ++H+     GV PN     KL +       G + YA ++F ++P+  +  +N MI G+ K
Sbjct: 52  QLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKGWSK 111

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
                E + L   ++  G  PD +TF  +L      R    L    G+ +H  ++K  + 
Sbjct: 112 VDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLK--RDGGALA--CGKKLHCHVVKFGLG 167

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           ++  +  ALV  Y   G    AR VFD   +++V     MISG+      E++ E+  + 
Sbjct: 168 SNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVE- 226

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE-----DVKLGSALVDMYAKCG 298
           +E+++V   ++     +S  +  K  ++ C+ +     E      ++L +ALV+ YA CG
Sbjct: 227 MERNLVSPTSVTLLLVLSACSKVKDKDL-CKRVHEYVSECKTEPSLRLENALVNAYAACG 285

Query: 299 KIDDARRVFDHMQQKNVFTWTS-------------------------------MIDGYGK 327
           ++D A R+F  M+ ++V +WTS                               MIDGY +
Sbjct: 286 EMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLR 345

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
            G  N++LE+F  MQ   + P+  T +  L+AC H G ++ G  I   ++++  +K  + 
Sbjct: 346 AGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKN-KIKNDVV 404

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
               ++D+  + G  E+A K   +M ++ +   W A++
Sbjct: 405 VGNALIDMYFKCGCSEKAQKVFHDMDQR-DKFTWTAMV 441



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 72/311 (23%), Positives = 140/311 (45%), Gaps = 22/311 (7%)

Query: 199 GGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAM 254
           GG  SYA  +F  + E +V+   +MI G+       +   ++    ++ V  D   +  +
Sbjct: 81  GGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFL 140

Query: 255 IEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKN 314
           + G            ++HC ++K     ++ + +ALV MY+ CG +D AR VFD   +++
Sbjct: 141 LNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKED 200

Query: 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374
           VF+W  MI GY +     +++EL   M+   V P  VT L  LSAC      D  + + E
Sbjct: 201 VFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHE 260

Query: 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV--WAALLSSCRLHD 432
            +  +   +P +     +V+     G ++ A++    M  +   DV  W +++       
Sbjct: 261 YVS-ECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKAR---DVISWTSIVKGYVERG 316

Query: 433 DVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD----- 487
           ++++A    ++   +   DR    + +   L  AG ++   E+  +M+  G++ D     
Sbjct: 317 NLKLARTYFDQ---MPVRDRISWTIMIDGYL-RAGCFNESLEIFREMQSAGMIPDEFTMV 372

Query: 488 ---TGCSWVGT 495
              T C+ +G+
Sbjct: 373 SVLTACAHLGS 383


>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
          Length = 807

 Score =  261 bits (666), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 141/438 (32%), Positives = 242/438 (55%), Gaps = 11/438 (2%)

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           +++   + ++G +PN      +L   +K   +  A  MFD++P+ +++ +N +++GY + 
Sbjct: 337 MEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVTTWNTLLSGYGQE 396

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
              +E++ L R++     +PD  T ++IL  S+C R        LG+ VH+  ++  +  
Sbjct: 397 ELHQETIDLFRRMQHQNVQPDRTTLAVIL--SSCSRLG---NFELGKQVHSASVRLLLHN 451

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
           D  + + L+D Y K G+   A I+F+MM E++V+C  SMISG       E+A +  ++  
Sbjct: 452 DMFVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMR 511

Query: 245 EKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           E  +      Y +MI      + +  +  ++H Q++K+ + ++V +G +L+DMYAK G +
Sbjct: 512 ENGMFPTESSYASMIN-LCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNM 570

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           DDAR  F+ M  KN+  W  MI GY +NG   +A+ELF  M     +P+ VTF+  L+ C
Sbjct: 571 DDARLFFNCMIVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGC 630

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            H+GLVD+    F SME +Y + P +EHY C++D L RA    +    + +MP K +  +
Sbjct: 631 SHSGLVDEAVTFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDPIL 690

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W  LL++C +H + E+   +A  +F+L+  + P  YV LSN  A  G+    + +R  M 
Sbjct: 691 WEVLLAACVVHHNAELGEFSAKHLFRLDPKN-PSPYVLLSNIYATLGRHGDASAVRALMS 749

Query: 481 LRGVLKDTGCSWVGTESG 498
            RGV+K  G SWV  + G
Sbjct: 750 SRGVVKGRGYSWVNHKDG 767



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/360 (26%), Positives = 167/360 (46%), Gaps = 24/360 (6%)

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           + G L  A  +   +P R   ++N +IA   ++G   E+L + + ++  G  P  +T + 
Sbjct: 88  RAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLAS 147

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           +L A   C +   L  + GR  H   +K  +     +   L+  Y K G  + A  +FD 
Sbjct: 148 VLSA---CGAVAAL--DDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDG 202

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIV----VYNAMIEGYSISIE 263
           M   N +  T+M+ G    G V+DA  +F    R  +  D V    V  A  +  +    
Sbjct: 203 MPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYN 262

Query: 264 TARK---ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
            AR    A  +H  +++  F  D  +G++LVD+YAK  K+D+A +VF+ +   ++ +W  
Sbjct: 263 VARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNI 322

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
           +I GYG+ G   +A+E+   MQE   +PN VT+   L++C  A  V   R +F+ +    
Sbjct: 323 LITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIP--- 379

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSCRLHDDVEMA 437
             KP +  +  ++   G+    ++ +     M     +P+    A +LSSC    + E+ 
Sbjct: 380 --KPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELG 437



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 172/380 (45%), Gaps = 43/380 (11%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G + H    K G+  +  +   LL ++ KCG++  A ++FD +P     ++  M+ G  +
Sbjct: 161 GRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQ 220

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKA-STCCRSNVPLPR--NLGRMVHAQILKC 180
            G V+++L L  ++  +G R D    S +L A +  C  +  + R   L + +HA +++ 
Sbjct: 221 GGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRK 280

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
              +D  +  +LVD Y KG K                               +++A ++F
Sbjct: 281 GFGSDQHVGNSLVDLYAKGMK-------------------------------MDEAIKVF 309

Query: 241 RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
                  IV +N +I GY   +    +A+EV  + ++   FE  ++     +M A C K 
Sbjct: 310 ESLSSVSIVSWNILITGYG-QLGCYERAMEV-LEFMQESGFEPNEV--TYSNMLASCIKA 365

Query: 301 DD---ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
            D   AR +FD + + +V TW +++ GYG+     + ++LF  MQ   VQP+  T    L
Sbjct: 366 RDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVIL 425

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           S+C   G  + G+++  +  R   +   M   + ++D+  + G +  AL  +  M  + +
Sbjct: 426 SSCSRLGNFELGKQVHSASVR-LLLHNDMFVASGLIDIYSKCGQVGIAL-IIFNMMTERD 483

Query: 418 SDVWAALLSSCRLHDDVEMA 437
              W +++S   +H   E A
Sbjct: 484 VVCWNSMISGLAIHSLSEEA 503



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 46/193 (23%), Positives = 85/193 (44%), Gaps = 17/193 (8%)

Query: 238 EIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHC-QLIKNVFFEDVKLGSALVDMYAK 296
            +    +  D  + N ++E YS+S       L  H  +  + +   +V   +A +    +
Sbjct: 35  RVLAAGLAADTFLLNRLVELYSLS------GLPCHALRAFRALPHPNVYSYNAAISAACR 88

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
            G +  AR +   M  +N  +W ++I    ++G+P +ALE++  M +  + P   T    
Sbjct: 89  AGDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASV 148

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKME-HYACMVDLLG---RAGSLEQALKFVLEM 412
           LSACG    +D GR          ++K  ++ H      LLG   + GS+  A++    M
Sbjct: 149 LSACGAVAALDDGRRC-----HGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGM 203

Query: 413 PEKPNSDVWAALL 425
           P  PN   + A++
Sbjct: 204 P-SPNEVSFTAMM 215



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA + K G   N  +   L+ ++ K G +  A   F+ +  + L A+N MI GY +
Sbjct: 538 GRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQ 597

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
           NG  E+++ L   ++++ ++PD  TF  +L
Sbjct: 598 NGFGEKAVELFEYMLTTKQKPDSVTFIAVL 627


>gi|225452869|ref|XP_002283796.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g15300-like [Vitis vinifera]
          Length = 550

 Score =  260 bits (665), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 164/494 (33%), Positives = 259/494 (52%), Gaps = 70/494 (14%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKC---GALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +IHA +   G   NT+ +++ LI        G + YA Q+F  + +     +N MI G  
Sbjct: 31  QIHASMIVKGFNSNTS-ALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSA 89

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST-CC-----------------RSN-- 162
           ++     ++SL  ++ +   RPD +TF  +LKA T  C                  SN  
Sbjct: 90  QSPSPLNAISLYSQMENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTF 149

Query: 163 -----VPLPRNLGRMVHAQIL-KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216
                +    N G +  A+ L     K D V ++AL   Y + G+   AR +FD M  K+
Sbjct: 150 VRNTLIYFHANCGDLAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKD 209

Query: 217 VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE------ 270
           ++    MI+G+  +G +E A ++F +  ++D+V +NAMI GY +   + ++ALE      
Sbjct: 210 LVSWNVMITGYAKRGEMESARKLFDEVPKRDVVTWNAMIAGY-VLCGSNQQALEMFEEMR 268

Query: 271 -----------------------------VHCQLIKNVFFED--VKLGSALVDMYAKCGK 299
                                        +HC  I  + F D  V LG+AL+DMYAKCG 
Sbjct: 269 SVGELPDEVTMLSLLSACTDLGDLDAGQRIHC-CISEMGFRDLSVLLGNALIDMYAKCGS 327

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I  A  VF  M++K+V TW S++ G   +G+  +++ LF  M++  ++P+ +TF+G L A
Sbjct: 328 IVRALEVFQGMREKDVSTWNSVLGGLAFHGHAEKSIHLFTEMRKLKIRPDEITFVGVLVA 387

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C HAG V++GR+ F+ M  +Y+++P + HY CMVDLLGRAG L +A  F+  M  +PN+ 
Sbjct: 388 CSHAGRVEEGRQYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMKIEPNAI 447

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW  LL +CR+H +VE+   A  ++ K+  +D  G YV LSN  A+ G+WD V ++R+ M
Sbjct: 448 VWRTLLGACRIHGNVELGRRANMQLLKMR-HDESGDYVLLSNIYASRGEWDGVEKVRKLM 506

Query: 480 KLRGVLKDTGCSWV 493
              GV K+ GCS +
Sbjct: 507 DDSGVRKEAGCSLI 520


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  260 bits (665), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 159/446 (35%), Positives = 253/446 (56%), Gaps = 19/446 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H    KTG +        L+ ++ KCGA+  A ++   +P+R++ + N +IAGY +
Sbjct: 548 GKQVHCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIAGYAQ 607

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
              +E++++L R ++  G      TF+ +L A   C     L  NLGR +H+ ILK  ++
Sbjct: 608 I-NLEQAVNLFRDMLVEGINSTEITFASLLDA---CHEQQKL--NLGRQIHSLILKMGLQ 661

Query: 184 ADD-VLYTALVDSYVKGGKTSYARIVF-DMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
            DD  L  +L+  Y+   +T+ A ++F +    K+ +  T+MISG         A ++++
Sbjct: 662 LDDEFLGVSLLGMYMNSLRTTDASVLFSEFSNPKSAVVWTAMISGLSQNDCSVVALQLYK 721

Query: 242 K----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           +     V  D   + + +   ++ + + +   E H  +    F  D    SALVDMYAKC
Sbjct: 722 EMRSCNVLPDQATFVSALRACAV-VSSIKDGTETHSLIFHTGFDSDELTSSALVDMYAKC 780

Query: 298 GKIDDARRVFDHM-QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           G +  + +VF  M ++K+V +W SMI G+ KNG    AL +F  M++  V P+ VTFLG 
Sbjct: 781 GDVKSSMQVFKEMSRKKDVISWNSMIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLGV 840

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           L+AC H+G V +GR IF+ M   Y M+P+ +H ACMVDLLGR GSL++A +F+ ++  +P
Sbjct: 841 LTACSHSGRVSEGRLIFDMMVNLYGMQPRADHCACMVDLLGRWGSLKEAEEFINKLNFEP 900

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLN-ANDRPGAYVALSNTLAAAGKWDSVTEL 475
           ++ VWA +L +CR+H D      AA ++ +L   N  P  YV LSN  AA+G WD V  L
Sbjct: 901 DAKVWATMLGACRIHGDDIRGQQAAEKLIELEPQNSSP--YVLLSNIYAASGNWDEVNTL 958

Query: 476 REKMKLRGVLKDTGCSW--VGTESGL 499
           R +M+ +GV K  GCSW  VG E+ +
Sbjct: 959 RREMREKGVKKLPGCSWIVVGQETNM 984



 Score =  155 bits (391), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 96/377 (25%), Positives = 190/377 (50%), Gaps = 11/377 (2%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L   S  S +  YI    P   +K+   + K G +P+    + ++  ++  G L  A  +
Sbjct: 224 LDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINAYVDLGRLDNASDL 283

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           F  +P R + A+N MI+G+ K G   E++   + +  +G +    T   +L A     + 
Sbjct: 284 FSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAA- 342

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
                + G +VHA+ LK  + ++  + ++LV  Y K GK   A+ VFD + E+NV+   +
Sbjct: 343 ----LDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNA 398

Query: 223 MISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKN 278
           M+ G++  G+  +  E+F          D   Y++++   +  ++      ++H  +IKN
Sbjct: 399 MLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACA-CLKYLDLGHQLHSVIIKN 457

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
            F  ++ +G+ALVDMYAK G ++DAR+ F+ ++ ++  +W  +I GY +  +  +A  LF
Sbjct: 458 KFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLF 517

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398
             M    + P+ V+    LSAC     +++G+++   +      + K+   + ++D+  +
Sbjct: 518 RRMNLLGILPDEVSLASILSACASVRGLEQGKQV-HCLSVKTGQETKLYSGSSLIDMYAK 576

Query: 399 AGSLEQALKFVLEMPEK 415
            G+++ A K +  MPE+
Sbjct: 577 CGAIDSAHKILACMPER 593



 Score =  152 bits (385), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 122/438 (27%), Positives = 207/438 (47%), Gaps = 19/438 (4%)

Query: 1   MPNLSRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDT 60
           MPN + +  ++  S H +    V   + F    QN        T ++L S L    +   
Sbjct: 287 MPNRNVVAWNLMISGHAKGGYGVEAIEFF----QNMRKAGIKSTRSTLGSVLSAIASLAA 342

Query: 61  PFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120
             +GL +HA   K G+  N  +   L+ ++ KCG ++ A ++FD L ++ +  +N M+ G
Sbjct: 343 LDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGG 402

Query: 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
           Y++NG   E + L   + S G  PD +T+S IL A  C +       +LG  +H+ I+K 
Sbjct: 403 YVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKY-----LDLGHQLHSVIIKN 457

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
              ++  +  ALVD Y K G    AR  F+++  ++ +    +I G++ +    +A  +F
Sbjct: 458 KFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLF 517

Query: 241 RKTVEKDIV---VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           R+     I+   V  A I     S+    +  +VHC  +K      +  GS+L+DMYAKC
Sbjct: 518 RRMNLLGILPDEVSLASILSACASVRGLEQGKQVHCLSVKTGQETKLYSGSSLIDMYAKC 577

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G ID A ++   M +++V +  ++I GY +  N  QA+ LF  M    +    +TF   L
Sbjct: 578 GAIDSAHKILACMPERSVVSMNALIAGYAQI-NLEQAVNLFRDMLVEGINSTEITFASLL 636

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR-AGSLEQALKFVL--EMPE 414
            AC     ++ GR+I   + +   M  +++     V LLG    SL      VL  E   
Sbjct: 637 DACHEQQKLNLGRQIHSLILK---MGLQLDDEFLGVSLLGMYMNSLRTTDASVLFSEFSN 693

Query: 415 KPNSDVWAALLSSCRLHD 432
             ++ VW A++S    +D
Sbjct: 694 PKSAVVWTAMISGLSQND 711



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 124/486 (25%), Positives = 216/486 (44%), Gaps = 98/486 (20%)

Query: 7   IRSSVFSSTHNRHYTL----VP-----PNQTFPPK-----LQNYDSLSNPLTATSL---- 48
           +++S  S+ H+ H+ L    +P     P+ T  P+     LQN    S  +   SL    
Sbjct: 8   LKTSPSSNLHSFHHQLTFSAIPNGSNHPSHTLKPRIYTHILQNCLQKSKQVKTHSLFDEI 67

Query: 49  PSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ 108
           P  L  +  ++       IHA   K G      +   ++ L+ KC  + YA + F +L  
Sbjct: 68  PQRLSQFSTTNKI-----IHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLED 122

Query: 109 RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRN 168
           + + A+N +++ + K G     +     L +SG  P+ +TF+++L  S+C R  +     
Sbjct: 123 KDILAWNSILSMHSKQGFPHLVVKYFGLLWNSGVWPNEFTFAIVL--SSCARLEMV---K 177

Query: 169 LGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM 228
            GR VH  ++K   ++      AL+  Y K    + AR +FD  +E + +  TSMI G++
Sbjct: 178 CGRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYI 237

Query: 229 SQGFVEDAEEIFRK--------------TV---------------------EKDIVVYNA 253
             G  E+A ++F++              TV                      +++V +N 
Sbjct: 238 KVGLPEEAVKVFQEMEKVGQEPDQVAFVTVINAYVDLGRLDNASDLFSRMPNRNVVAWNL 297

Query: 254 MIEGYSIS---------IETARKA-------------------------LEVHCQLIKNV 279
           MI G++            +  RKA                         L VH + +K  
Sbjct: 298 MISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQG 357

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
              +V +GS+LV MYAKCGK++ A++VFD + ++NV  W +M+ GY +NG  N+ +ELF 
Sbjct: 358 LHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFF 417

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
            M+ C   P+  T+   LSAC     +D G ++   + ++      +     +VD+  ++
Sbjct: 418 NMKSCGFYPDDFTYSSILSACACLKYLDLGHQLHSVIIKN-KFASNLFVGNALVDMYAKS 476

Query: 400 GSLEQA 405
           G+LE A
Sbjct: 477 GALEDA 482


>gi|225457355|ref|XP_002281803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 553

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/504 (31%), Positives = 260/504 (51%), Gaps = 56/504 (11%)

Query: 40  SNPLTATSLPSALQHYIN----SDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGA 95
           ++P   T L +  QH+ +     DT     +IH  I   G      + +KLL  ++  G 
Sbjct: 6   ASPANLTGLRALQQHFFSLLQTCDTIKKLKQIHTQIIVNGFSQKNFLLVKLLSFYITSGN 65

Query: 96  LKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           L  A ++F+ +   + + +N MI G+ ++    + + L  ++V +   P+ +T+S ++  
Sbjct: 66  LLNAHKVFERIENPSTTVWNQMIRGHSQSETPHKLVELYNRMVEAEAEPNEFTYSFLIGG 125

Query: 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY-VKGG--KTSYARIVFDMM 212
             C RS   L R  G  VH +++      +  + T+LV+ Y + GG      AR VFD +
Sbjct: 126 --CARSR--LLRE-GEQVHGRVVANGYCTNVFVRTSLVNLYAIAGGYDGVRKARRVFDEI 180

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVH 272
           +++N++   S+++G++  G V+ A  IF +  E+++V +  MI G +  I   ++AL + 
Sbjct: 181 VDRNIVSWNSLLAGYVRCGDVDGARRIFDEMPERNVVSWTTMIAGCA-QIGRCKQALHLF 239

Query: 273 CQLIKN----------------VFFEDVKLGS-----------------------ALVDM 293
            ++ +                     D+KLG+                       +L+ M
Sbjct: 240 HEMRRAGVKLDQVALVAALSACAELGDLKLGTWIHSYIDERLHAGNQPLLVSLNNSLIHM 299

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV---QPNY 350
           YA CG ID A +VF  MQQ++  +WTSMI G+ K G+  +AL +F  MQ       +P+ 
Sbjct: 300 YASCGVIDKAYKVFIGMQQRSTISWTSMITGFAKQGHAEEALGVFQWMQRLGTDEGRPDG 359

Query: 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410
           +TF+G L AC HAG VD+GR  FE M + + + P++EHY CMVDLL RAG L++A + + 
Sbjct: 360 ITFIGVLCACSHAGFVDQGRHFFECMNKKWGIVPRIEHYGCMVDLLSRAGFLDEAHRLIE 419

Query: 411 EMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI-FKLNANDRPGAYVALSNTLAAAGKW 469
            MP KPN  VW ALL  CR+H + E+A+  A ++  +L  +   G  V LSN  A A +W
Sbjct: 420 SMPMKPNDAVWGALLGGCRIHKNAELASHVAQKLALELKPDQAAGYLVLLSNVYATAKRW 479

Query: 470 DSVTELREKMKLRGVLKDTGCSWV 493
             V  +R+KM   GV K  G SWV
Sbjct: 480 QDVALVRQKMVEIGVRKPAGRSWV 503


>gi|225453947|ref|XP_002274056.1| PREDICTED: pentatricopeptide repeat-containing protein At2g45350,
           chloroplastic-like [Vitis vinifera]
          Length = 635

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 160/462 (34%), Positives = 255/462 (55%), Gaps = 28/462 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH  + +  +  +  +   L+ L+L+CG L  A Q+FD + +R   ++N MI GY+K
Sbjct: 141 GMQIHGLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVK 200

Query: 124 NGQVEESLSLV-------RKLVSSGERPDGYTFSMI-LKASTCCRSNVPLPRNL------ 169
           +G V+ +  L        + L+S      GY  S   L+ +      +P  R+L      
Sbjct: 201 HGMVKSARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMP-KRDLISWNSM 259

Query: 170 -------GRMVHAQILKCDVKADDVL-YTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
                  G+M +A  L   +   DV+ +  +VD Y K G+   AR +FD M E++VI   
Sbjct: 260 IDGCVKCGKMENAHHLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCN 319

Query: 222 SMISGFMSQGFVEDAEEIFRKTV-EKDIVVYNA--MIEGYSIS-IETARKALEVHCQLIK 277
           +M++G++  G + +A   F   +  K++   NA  +I   +I+ +    + + +HC +  
Sbjct: 320 AMMAGYVQNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVALHCYIED 379

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
           N F    KLG AL+DMYAKCG ID+A  VF+ +  K++  W ++I G   +G    A EL
Sbjct: 380 NGFSLSEKLGVALIDMYAKCGSIDNALSVFEDIDDKSIDHWNAIIGGLAIHGLGEVAFEL 439

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
           F  M++  V+P+ +TF+G L+AC HAGLV +G   FE M R + ++PK++HY CMVD+LG
Sbjct: 440 FMEMEKLFVKPDDITFIGVLNACNHAGLVKEGLMCFELMRRVHKVEPKLQHYGCMVDILG 499

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457
           RAG +E+A KFV +MP +PN  VW  LLS+CR H++  +    A  +  +++ + P +YV
Sbjct: 500 RAGHVEEAKKFVEKMPIEPNDVVWRTLLSACRNHENFTIGEPVAKHLISVDSYN-PSSYV 558

Query: 458 ALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
            LSN  A  G W+ V  +R  MK R + K  GCS +  E  +
Sbjct: 559 LLSNIYAGFGMWNDVYRIRMMMKQRDLKKIPGCSQIELEGNV 600



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 114/444 (25%), Positives = 206/444 (46%), Gaps = 51/444 (11%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALK----YAGQMF-------DELPQRTLSAY 114
           +IH+ +  TG   N +++ ++ IL+    + K    +A  +F           Q     +
Sbjct: 32  QIHSRLITTGFINNPSLTTRI-ILNFSSSSHKPLVEFARYLFMSRHFGRKHRKQDNPFLW 90

Query: 115 NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH 174
           N +I  +       E+  +   ++ +G   D ++FS++LKA  C R  +      G  +H
Sbjct: 91  NAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKA--CSRLGLI---KEGMQIH 145

Query: 175 AQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVE 234
             + + ++ +D  L   L+  Y++ G    AR +FD M++++ +   SMI G++  G V+
Sbjct: 146 GLLGRMEIGSDVFLQNCLMCLYLRCGCLGIARQLFDRMMKRDSVSFNSMIDGYVKHGMVK 205

Query: 235 DAEEIF--RKTVEKDIVVYNAMIEGYSISIETARKALE--------------------VH 272
            A E+F      +K+++ +N+MI GY+ S E  R A E                    V 
Sbjct: 206 SARELFDVMPMEQKNLISWNSMISGYARSEEGLRVAWELFEEMPKRDLISWNSMIDGCVK 265

Query: 273 CQLIKNVFF-------EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
           C  ++N           DV   + +VD YAK G+ID AR +FD M +++V +  +M+ GY
Sbjct: 266 CGKMENAHHLFNQMPKRDVVSWANMVDGYAKLGEIDIARGLFDEMPERDVISCNAMMAGY 325

Query: 326 GKNGNPNQALELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD-YSMK 383
            +NG+  +AL  F  M+    + P+  T L  LSA    G  D+G  +   +E + +S+ 
Sbjct: 326 VQNGHLMEALNFFHDMLSRKELFPDNATLLITLSAIAQLGHFDEGVALHCYIEDNGFSLS 385

Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANE 443
            K+     ++D+  + GS++ AL  V E  +  + D W A++    +H   E+A     E
Sbjct: 386 EKLG--VALIDMYAKCGSIDNALS-VFEDIDDKSIDHWNAIIGGLAIHGLGEVAFELFME 442

Query: 444 IFKLNANDRPGAYVALSNTLAAAG 467
           + KL        ++ + N    AG
Sbjct: 443 MEKLFVKPDDITFIGVLNACNHAG 466



 Score = 46.2 bits (108), Expect = 0.034,   Method: Compositional matrix adjust.
 Identities = 29/120 (24%), Positives = 55/120 (45%), Gaps = 10/120 (8%)

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK---IDDARRVF-------DHMQQ 312
           +T     ++H +LI   F  +  L + ++  ++       ++ AR +F        H +Q
Sbjct: 25  KTLHDVNQIHSRLITTGFINNPSLTTRIILNFSSSSHKPLVEFARYLFMSRHFGRKHRKQ 84

Query: 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
            N F W ++I  +    +P +A  +F +M E  V  +  +F   L AC   GL+ +G +I
Sbjct: 85  DNPFLWNAIIKSFSHGEDPREAFVIFNLMLENGVCVDKFSFSLVLKACSRLGLIKEGMQI 144


>gi|125558027|gb|EAZ03563.1| hypothetical protein OsI_25699 [Oryza sativa Indica Group]
          Length = 528

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 143/403 (35%), Positives = 240/403 (59%), Gaps = 18/403 (4%)

Query: 99  AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
           A + FDE+P         M +GY++N  V  SL L R +++S         + ++  S  
Sbjct: 3   ARRAFDEIPDPNPVIVTAMASGYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSAS 62

Query: 159 CRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKT--SYARIVFDMMLEKN 216
            R  VP  R +   +HA I K   + +  +   ++DSY KGG      AR VFD M E++
Sbjct: 63  AR--VP-DRGVTASLHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERD 118

Query: 217 VICSTSMISGFMSQGFVEDAEEIFRKT------VEKDIVVYNAMIEG--YSISIETARKA 268
           V+   SMI+ +   G   +A  ++ K       ++ + V  +A++    ++ +I+T +  
Sbjct: 119 VVSWNSMIALYAQNGMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGK-- 176

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
             +H Q+++    E+V +G+++VDMY+KCG+++ A R F  +++KN+ +W++MI GYG +
Sbjct: 177 -HIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMH 235

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G   +ALE+F  M+   ++PNY+TF+  L+AC HAGL+D+GR  + +M++++ ++  +EH
Sbjct: 236 GRGQEALEIFTEMKRSGLRPNYITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEH 295

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
           Y CMVDLLGRAG L++A   + EM  KP++ +W ALLS+CR+H +VE+A ++   +F+L+
Sbjct: 296 YGCMVDLLGRAGCLDEAYSLIKEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELD 355

Query: 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
           A++  G YV LSN  A AG W  V  +R  +K R + K  G S
Sbjct: 356 ASN-SGYYVLLSNIYAEAGMWKDVERIRLLVKTRRIEKPPGYS 397



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 65/123 (52%), Gaps = 9/123 (7%)

Query: 35  NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           N  +LS  L A +   A+Q          G  IH  + + G++ N  +   ++ ++ KCG
Sbjct: 155 NAVALSAVLLACAHAGAIQ---------TGKHIHNQVVRMGLEENVYVGTSIVDMYSKCG 205

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
            ++ A + F ++ ++ + +++ MI GY  +G+ +E+L +  ++  SG RP+  TF  +L 
Sbjct: 206 RVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPNYITFISVLA 265

Query: 155 AST 157
           A +
Sbjct: 266 ACS 268


>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
 gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
          Length = 683

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 150/440 (34%), Positives = 233/440 (52%), Gaps = 13/440 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H  + K G+  N+ IS  LL +++KCG L+ A  +FDEL    L  +  MI GY +
Sbjct: 252 GRWMHGSVIKQGLMSNSFISAALLDMYVKCGELEDAQCVFDELSYIDLVLWTTMIVGYTQ 311

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG   ++L L      +   P+  T + +L AS   R       +LGR +H   +K  + 
Sbjct: 312 NGNPLDALRLFLDKKFANIVPNSVTIATVLSASAQLRD-----LSLGRSIHGIAVKLGLV 366

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
              V+  ALVD Y K    S A  +F  +  K+V+   SM+SG+       DA  +F++ 
Sbjct: 367 EYTVVVNALVDMYAKCQAVSEANRIFGSISNKDVVAWNSMLSGYAENNMCNDALMLFKQM 426

Query: 244 VEKD-----IVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
             K      I V +A+    S+ +         H   +K+ F  ++ + +AL+++Y KCG
Sbjct: 427 SLKGPSPDAISVVHAL--SASVCLGDLLIGKSFHGYAVKHAFLSNIYVSTALLNLYNKCG 484

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            +  ARRVFD M  +N  TW +MI GYG  G+   +++LF  M +  V PN V F   LS
Sbjct: 485 DLPSARRVFDEMNDRNSVTWCAMIGGYGMQGDSAGSIDLFGEMLKDGVHPNDVAFTSILS 544

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
            C H G+V   +  F+SM + +++ P M+HYACMVD+L RAG+LE+AL+F+  MP + ++
Sbjct: 545 TCSHTGMVTAAKRYFDSMAQHFNITPSMKHYACMVDVLARAGNLEEALEFIDNMPMQADT 604

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            VW A L  C LH  ++    A   +  L+  +RP  YV +SN   + G W+    +R  
Sbjct: 605 SVWGAFLHGCELHSRLQFGEEAIKRMMVLHP-ERPDLYVLISNLYTSNGMWEKSQAIRRW 663

Query: 479 MKLRGVLKDTGCSWVGTESG 498
           M+ +G++K  G S +G E+G
Sbjct: 664 MQEKGLVKLPGYSSIGRENG 683



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/298 (31%), Positives = 144/298 (48%), Gaps = 20/298 (6%)

Query: 85  KLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL---VRKLVSSG 141
           KLL  +   G L  A  +FD  P+    +Y  M+   ++  +  E+++L   +R+     
Sbjct: 69  KLLSCYAALGDLASARMVFDGTPRPDAYSYGVMLWCLVQAERHAEAVALHQDMRRRRPCP 128

Query: 142 ERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK 201
           E  D +  S+ LKA  C RS        G  +H   +K    AD  +  +LVD Y K G 
Sbjct: 129 EAQDDFVLSLALKA--CIRSA---DYGYGTRLHCDAVKVG-GADGFVMNSLVDMYAKAGD 182

Query: 202 TSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS 261
              AR VF+ +  +NV+  TSM+SG +  GF  D   +F K  + ++      I     +
Sbjct: 183 LECARKVFERIPGRNVVSWTSMLSGCVQNGFAADGLLLFNKMRQDNVPPSEYTIA----T 238

Query: 262 IETARKAL-------EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKN 314
           + TA  AL        +H  +IK     +  + +AL+DMY KCG+++DA+ VFD +   +
Sbjct: 239 VITACSALIGLHQGRWMHGSVIKQGLMSNSFISAALLDMYVKCGELEDAQCVFDELSYID 298

Query: 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           +  WT+MI GY +NGNP  AL LF   +   + PN VT    LSA      +  GR I
Sbjct: 299 LVLWTTMIVGYTQNGNPLDALRLFLDKKFANIVPNSVTIATVLSASAQLRDLSLGRSI 356



 Score = 72.0 bits (175), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 55/185 (29%), Positives = 91/185 (49%), Gaps = 13/185 (7%)

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
            +HC  +K V   D  + ++LVDMYAK G ++ AR+VF+ +  +NV +WTSM+ G  +NG
Sbjct: 154 RLHCDAVK-VGGADGFVMNSLVDMYAKAGDLECARKVFERIPGRNVVSWTSMLSGCVQNG 212

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
                L LF  M++  V P+  T    ++AC     + +GR +  S+ +   M       
Sbjct: 213 FAADGLLLFNKMRQDNVPPSEYTIATVITACSALIGLHQGRWMHGSVIKQGLMSNSFIS- 271

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAAL----------LSSCRLHDDVEMANI 439
           A ++D+  + G LE A + V +     +  +W  +          L + RL  D + ANI
Sbjct: 272 AALLDMYVKCGELEDA-QCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLFLDKKFANI 330

Query: 440 AANEI 444
             N +
Sbjct: 331 VPNSV 335



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/119 (30%), Positives = 53/119 (44%), Gaps = 2/119 (1%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           A S+  AL   +       G   H +  K     N  +S  LL L+ KCG L  A ++FD
Sbjct: 435 AISVVHALSASVCLGDLLIGKSFHGYAVKHAFLSNIYVSTALLNLYNKCGDLPSARRVFD 494

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           E+  R    +  MI GY   G    S+ L  +++  G  P+   F+ IL  STC  + +
Sbjct: 495 EMNDRNSVTWCAMIGGYGMQGDSAGSIDLFGEMLKDGVHPNDVAFTSIL--STCSHTGM 551


>gi|357440905|ref|XP_003590730.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479778|gb|AES60981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 627

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 154/447 (34%), Positives = 251/447 (56%), Gaps = 25/447 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH    + G   +  +   ++ ++++C     A ++FDE+PQR + ++N +I+G   
Sbjct: 145 GKLIHGKSLRIGFVSDIVVGNSVMSMYIRCREFGDAMKVFDEMPQRNVGSFNVIISGCAA 204

Query: 124 NGQVEESL-----SLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
            G ++ SL     +  R++   G   D +T + +L    CC S+       GR +H  ++
Sbjct: 205 LGNLDYSLYADLWNFFRRMQCQGYNADAFTVASLLP--MCCDSDGKFDH--GRELHCYLV 260

Query: 179 K--CDVK--ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVE 234
           K   D+K  +D  + ++L+D Y +  K   +R VFD M  +N+   T+MI+G++  G  E
Sbjct: 261 KNGLDLKMCSDVHMGSSLIDMYSRSNKLVLSRRVFDQMKSRNIYVWTAMINGYVQNGAPE 320

Query: 235 DAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL-------EVHCQLIKNVFFEDVKLG 287
            A  +FR+   KD +  N +     +S+  A   L       +VH   IK  F + + L 
Sbjct: 321 GALILFREMQRKDRIRPNRV---SLVSVLPACGLLVGLMGGKQVHAFSIKMEFNDYISLR 377

Query: 288 SALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
           +AL+DMYAKCG +D ARRVFD+    K+  TW+S+I  YG +G   +AL  +  M +  +
Sbjct: 378 NALIDMYAKCGSLDYARRVFDNGSYSKDAITWSSIISAYGLHGKGQEALTTYYEMLQQGI 437

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
           +P+ +T +G LSAC  +GLVD+G  I+ S+  +Y MKP +E   C+VDLLGR+G L+QAL
Sbjct: 438 KPDMITVVGVLSACCRSGLVDEGISIYNSLTTEYEMKPSVEICGCVVDLLGRSGQLDQAL 497

Query: 407 KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
            F+ EMP  P   VW +LL++  +H +    ++A   + +L   + P  Y++LSNT A++
Sbjct: 498 DFIREMPIIPGPSVWGSLLTASVIHGNSMTRDLAYRCLLELEP-ENPSNYISLSNTYASS 556

Query: 467 GKWDSVTELREKMKLRGVLKDTGCSWV 493
            +WD +TE+R  MK RG+ K  G SW+
Sbjct: 557 RRWDEITEVRSMMKERGLRKVPGISWI 583



 Score =  148 bits (374), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 113/427 (26%), Positives = 206/427 (48%), Gaps = 34/427 (7%)

Query: 27  QTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKI----HAHITKTGVKPNTNI 82
           +TF      Y   ++ + + S P  L H +      + LK+    H+ I       N  +
Sbjct: 5   RTFSRTTSRYRYHTSAIVSLS-PHNLLHLLQLSIDLHSLKLTQQCHSQILTNCFSQNAFL 63

Query: 83  SIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE 142
           + +L+  +   G    +  +FD +  + +  +N +I GY+KN Q + ++ L R++     
Sbjct: 64  TTRLISAYATFGDSIMSKLVFDSVHTKNVYLWNSLINGYVKNHQFDNAIVLFRQM-GRCL 122

Query: 143 RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKT 202
            PD YT + I K S   +  V     LG+++H + L+    +D V+  +++  Y++  + 
Sbjct: 123 LPDDYTLATISKVSGEIQDLV-----LGKLIHGKSLRIGFVSDIVVGNSVMSMYIRCREF 177

Query: 203 SYARIVFDMMLEKNVICSTSMISGFMSQGFVE-----DAEEIFRKT----VEKDIVVYNA 253
             A  VFD M ++NV     +ISG  + G ++     D    FR+        D     +
Sbjct: 178 GDAMKVFDEMPQRNVGSFNVIISGCAALGNLDYSLYADLWNFFRRMQCQGYNADAFTVAS 237

Query: 254 MIEGYSISIETARKALEVHCQLIKNVF----FEDVKLGSALVDMYAKCGKIDDARRVFDH 309
           ++     S        E+HC L+KN        DV +GS+L+DMY++  K+  +RRVFD 
Sbjct: 238 LLPMCCDSDGKFDHGRELHCYLVKNGLDLKMCSDVHMGSSLIDMYSRSNKLVLSRRVFDQ 297

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ-ECCVQPNYVTFLGALSACGHAGLVDK 368
           M+ +N++ WT+MI+GY +NG P  AL LF  MQ +  ++PN V+ +  L ACG    +  
Sbjct: 298 MKSRNIYVWTAMINGYVQNGAPEGALILFREMQRKDRIRPNRVSLVSVLPACGLLVGLMG 357

Query: 369 GREIFESMERDYSMKPKMEHYA----CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAAL 424
           G+++       +S+K +   Y      ++D+  + GSL+ A +         ++  W+++
Sbjct: 358 GKQVHA-----FSIKMEFNDYISLRNALIDMYAKCGSLDYARRVFDNGSYSKDAITWSSI 412

Query: 425 LSSCRLH 431
           +S+  LH
Sbjct: 413 ISAYGLH 419



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 80/312 (25%), Positives = 144/312 (46%), Gaps = 18/312 (5%)

Query: 169 LGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM 228
           L +  H+QIL      +  L T L+ +Y   G +  +++VFD +  KNV    S+I+G++
Sbjct: 44  LTQQCHSQILTNCFSQNAFLTTRLISAYATFGDSIMSKLVFDSVHTKNVYLWNSLINGYV 103

Query: 229 SQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDV 284
                ++A  +FR+     +  D  +  A I   S  I+       +H + ++  F  D+
Sbjct: 104 KNHQFDNAIVLFRQMGRCLLPDDYTL--ATISKVSGEIQDLVLGKLIHGKSLRIGFVSDI 161

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL-----ELFC 339
            +G++++ MY +C +  DA +VFD M Q+NV ++  +I G    GN + +L       F 
Sbjct: 162 VVGNSVMSMYIRCREFGDAMKVFDEMPQRNVGSFNVIISGCAALGNLDYSLYADLWNFFR 221

Query: 340 MMQECCVQPNYVTFLGALSACGHA-GLVDKGREIFESMER---DYSMKPKMEHYACMVDL 395
            MQ      +  T    L  C  + G  D GRE+   + +   D  M   +   + ++D+
Sbjct: 222 RMQCQGYNADAFTVASLLPMCCDSDGKFDHGRELHCYLVKNGLDLKMCSDVHMGSSLIDM 281

Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA 455
             R+  L  + +   +M  + N  VW A+++    +   E A I   E+ + +   RP  
Sbjct: 282 YSRSNKLVLSRRVFDQMKSR-NIYVWTAMINGYVQNGAPEGALILFREMQRKD-RIRPNR 339

Query: 456 YVALSNTLAAAG 467
            V+L + L A G
Sbjct: 340 -VSLVSVLPACG 350


>gi|125543632|gb|EAY89771.1| hypothetical protein OsI_11313 [Oryza sativa Indica Group]
          Length = 798

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 160/508 (31%), Positives = 261/508 (51%), Gaps = 64/508 (12%)

Query: 26  NQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIK 85
            QT P       S+  P +  S  S L+ Y+      +GL   A      +    ++S  
Sbjct: 93  RQTLPDAAAALASIPFPPSVVSFTSLLRGYVR-----HGLLADAIRLFQQMPERNHVSYT 147

Query: 86  LLILHL-KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV-----RKLVS 139
           +L+  L   G +  A ++FDE+P R + A+  M++GY + G++ E+ +L      R +VS
Sbjct: 148 VLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVS 207

Query: 140 SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKG 199
                 GY  +            V L R L  ++  +        ++V +TA++  Y++ 
Sbjct: 208 WTAMISGYAQN----------GEVNLARKLFEVMPER--------NEVSWTAMLVGYIQA 249

Query: 200 GKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS 259
           G    A  +F+ M E  V    +M+ GF  +G V+ A+ +F K  E+D   ++AMI+ Y 
Sbjct: 250 GHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYE 309

Query: 260 ---------------------------ISIETARKAL-------EVHCQLIKNVFFEDVK 285
                                      ISI T   AL       EVH  +++  F  DV 
Sbjct: 310 QNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVF 369

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
             SAL+ MY KCG +D A+RVF   + K++  W SMI GY ++G   QAL +F  M+   
Sbjct: 370 AVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAG 429

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
           + P+ +T++GAL+AC + G V +GREIF SM  + S++P  EHY+CMVDLLGR+G +E+A
Sbjct: 430 MSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEA 489

Query: 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465
              +  MP +P++ +W AL+ +CR+H + E+A +AA ++ +L   +  G YV LS+   +
Sbjct: 490 FDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEVAAKKLLELEPGN-AGPYVLLSHIYTS 548

Query: 466 AGKWDSVTELREKMKLRGVLKDTGCSWV 493
            G+W+  +++R+ +  R + K  GCSW+
Sbjct: 549 VGRWEDASKMRKFISSRNLNKSPGCSWI 576



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/401 (24%), Positives = 194/401 (48%), Gaps = 57/401 (14%)

Query: 88  ILHL-KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDG 146
           I HL + G ++ A   F+ +P RT ++YN ++AGY +N   + +L L R++ S     D 
Sbjct: 24  IAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSR----DL 79

Query: 147 YTFSMILKASTCCR----------SNVPLPRNL--------GRMVHA------QILKCDV 182
            +++ ++   +  R          +++P P ++        G + H       ++ +   
Sbjct: 80  ASYNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMP 139

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           + + V YT L+   +  G+ + AR +FD M +++V+  T+M+SG+   G + +A  +F +
Sbjct: 140 ERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDE 199

Query: 243 TVEKDIVVYNAMIEGYSISIET--ARKALEVHCQ------------LIKNVFFED----- 283
             ++++V + AMI GY+ + E   ARK  EV  +             I+    ED     
Sbjct: 200 MPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVGYIQAGHVEDAAELF 259

Query: 284 -------VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
                  V   +A++  + + G +D A+ VF+ M++++  TW++MI  Y +N    +AL 
Sbjct: 260 NAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRERDDGTWSAMIKAYEQNEFLMEALS 319

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
            F  M    V+PNY + +  L+ C    ++D GRE+  +M R  S    +   + ++ + 
Sbjct: 320 TFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLR-CSFDMDVFAVSALITMY 378

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
            + G+L++A K V    E  +  +W ++++    H   E A
Sbjct: 379 IKCGNLDKA-KRVFHTFEPKDIVMWNSMITGYAQHGLGEQA 418



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 72/292 (24%), Positives = 121/292 (41%), Gaps = 17/292 (5%)

Query: 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV 250
           A +    + G    AR  F+ M  +      ++++G+      + A  +FR+   +D+  
Sbjct: 22  ARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLAS 81

Query: 251 YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM 310
           YNA+I G S+  +T   A      L    F   V   ++L+  Y + G + DA R+F  M
Sbjct: 82  YNALISGLSLRRQTLPDAA---AALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQM 138

Query: 311 QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR 370
            ++N  ++T ++ G    G  N+A  LF  M +     + V +   LS    AG + + R
Sbjct: 139 PERNHVSYTVLLGGLLDAGRVNEARRLFDEMPD----RDVVAWTAMLSGYCQAGRITEAR 194

Query: 371 EIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRL 430
            +F+ M      K  +  +  M+    + G +  A K    MPE+ N   W A+L     
Sbjct: 195 ALFDEMP-----KRNVVSWTAMISGYAQNGEVNLARKLFEVMPER-NEVSWTAMLVGYIQ 248

Query: 431 HDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
              VE     A E+F         A  A+       G  D+   + EKM+ R
Sbjct: 249 AGHVE----DAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMRER 296


>gi|359490408|ref|XP_002267761.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 650

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 170/542 (31%), Positives = 270/542 (49%), Gaps = 64/542 (11%)

Query: 7   IRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLP-SALQHYI--------- 56
           IRS   SST N H   +  NQ   P L  ++ +   L+ +  P  A+  Y          
Sbjct: 56  IRSYSLSST-NLHKAHLVFNQIECPTLVVWNHMIRGLSQSDHPVEAIHMYTRMHHQGITG 114

Query: 57  NSDTPFY-------------GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           N+ T  +             G KIH H  K G +    +S  L+ ++  CG L +A +MF
Sbjct: 115 NNLTLIFLFKACARVSDIVSGRKIHVHALKLGFESYLFVSNALIHMYAMCGQLGFAQKMF 174

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           D +  R L ++N +I GY +  + +E L L   + ++  + D  T   I+ A +    + 
Sbjct: 175 DGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAANIKADAVTMVKIILACSHL-GDW 233

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
               ++ + +    L+ DV     L   L+D Y +      A+ VFD M E+N++   ++
Sbjct: 234 EFADSMVKYIKENNLEIDV----YLGNTLIDMYGRRSLAELAQGVFDRMRERNIVSWNAL 289

Query: 224 ISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS------------------------ 259
           + G    G +  A ++F    ++D++ + +MI GYS                        
Sbjct: 290 VMGHAKVGNLTAARKLFDNMPKRDVISWTSMITGYSQASQFSDAVKLFQEMMAAKVKPDK 349

Query: 260 ISIETARKA----------LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309
           +++ +   A            VH  + ++    D+ +G++L+DMY KCG ++ A  VF  
Sbjct: 350 VTVASVLSACAHLGKLDVGWAVHHYIRRHGVQADIYVGNSLIDMYCKCGMVEKALEVFHR 409

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKG 369
           M+ K+  +WTS+I G   NG  N AL+LF  M    VQP + TF+G L AC HAGLV+KG
Sbjct: 410 MKDKDSVSWTSVISGLAVNGFANSALDLFSQMLREGVQPTHGTFVGILLACAHAGLVNKG 469

Query: 370 REIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCR 429
            E FESME  + + P M+HY C+VDLL R+G++++A +F+ +MP  P+  VW  LLS+C+
Sbjct: 470 LEYFESMESVHGLVPAMKHYGCVVDLLSRSGNIDKAYEFIKKMPIVPDVVVWRILLSACK 529

Query: 430 LHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTG 489
           LH +V +A IA   + +L+  D  G YV LSNT A   +WD   ++RE M+   V K +G
Sbjct: 530 LHGNVVLAEIATKRLLELDPCD-SGNYVLLSNTYAGVDRWDDAMKMRELMEDSDVQKPSG 588

Query: 490 CS 491
            S
Sbjct: 589 SS 590



 Score = 68.6 bits (166), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 59/263 (22%), Positives = 119/263 (45%), Gaps = 18/263 (6%)

Query: 173 VHAQILKCDVKADDVLYTALVDSY-VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
           +HA +++  +  D  L + ++ SY +       A +VF+ +    ++    MI G     
Sbjct: 36  LHAHLIRTQLHTDPFLMSDVIRSYSLSSTNLHKAHLVFNQIECPTLVVWNHMIRGLSQSD 95

Query: 232 FVEDAEEIFRKTVEKDIVVYNAMIE------GYSISIETARKALEVHCQLIKNVFFEDVK 285
              +A  ++ +   + I   N  +            I + RK   +H   +K  F   + 
Sbjct: 96  HPVEAIHMYTRMHHQGITGNNLTLIFLFKACARVSDIVSGRK---IHVHALKLGFESYLF 152

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           + +AL+ MYA CG++  A+++FD M  +++ +W ++I GY +     + L LF  M    
Sbjct: 153 VSNALIHMYAMCGQLGFAQKMFDGMLDRDLVSWNTLICGYSQYNKYKEVLRLFDAMTAAN 212

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESME---RDYSMKPKMEHYACMVDLLGRAGSL 402
           ++ + VT +  + AC H G      E  +SM    ++ +++  +     ++D+ GR  SL
Sbjct: 213 IKADAVTMVKIILACSHLG----DWEFADSMVKYIKENNLEIDVYLGNTLIDMYGRR-SL 267

Query: 403 EQALKFVLEMPEKPNSDVWAALL 425
            +  + V +   + N   W AL+
Sbjct: 268 AELAQGVFDRMRERNIVSWNALV 290


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 154/446 (34%), Positives = 245/446 (54%), Gaps = 19/446 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           KIH  + K G++ +  +   L+  +LK G+++ A ++F EL  R +  +N MI GY K G
Sbjct: 131 KIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIG 190

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
            ++E+L + R++   G  P  +T + IL      R ++    + G+ VH  ++K    + 
Sbjct: 191 CLDEALEVFRRMHVKGVAPSRFTITGILSVFAS-RGDL----DNGKTVHGIVMKMGYDSG 245

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT-- 243
             +  AL+D Y K      A I+F+M+ EK++    S+IS     G  +    +F K   
Sbjct: 246 VSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLG 305

Query: 244 --VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGS--------ALVDM 293
             +  D+V    ++   S  +       E+H  +I N   +D + G+        A++DM
Sbjct: 306 SGILPDLVTITTVLPACS-HLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDM 364

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           YAKCG +++A ++FD M +K+V +W  MI GYG +G   +AL +F  M E   +PN VT 
Sbjct: 365 YAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTL 424

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           +G LSAC HAG V  GR     ME  + + P +EHY C++D+LGRAG LE A + V +MP
Sbjct: 425 VGVLSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMP 484

Query: 414 EKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473
            + N  VW ALL +CRLH + E+A IAA ++ +L   +  G+YV +SN     G+++ V 
Sbjct: 485 IQANPVVWRALLGACRLHGNAELAEIAARQVLQLEP-EHCGSYVLMSNVYGVIGRYEEVL 543

Query: 474 ELREKMKLRGVLKDTGCSWVGTESGL 499
           E+R+ MK + V K  GCSW+  + G+
Sbjct: 544 EVRKTMKEQNVKKTPGCSWIELKDGV 569



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 106/381 (27%), Positives = 190/381 (49%), Gaps = 24/381 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF-DELPQRTLSAYNYMIAGYL 122
           G ++H+ +   G  P+      L+ ++ KCG +  A  +F D   +R + AYN +I+G++
Sbjct: 30  GKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERNVFAYNAIISGFV 89

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            NG   +     +K+   G  PD YTF  +++  TCC           + +H  +LK  +
Sbjct: 90  SNGLASKGFQFYKKMRLEGVMPDKYTFPCVVR--TCCEVMEV------KKIHGCLLKMGL 141

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           + D  + +ALV++Y+K G    A+ VF  +  ++V+   +MI+G+   G +++A E+FR+
Sbjct: 142 ELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRR 201

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCG 298
              K +      I G  +S+  +R  L+    VH  ++K  +   V + +AL+DMY KC 
Sbjct: 202 MHVKGVAPSRFTITGI-LSVFASRGDLDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCK 260

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            I DA  +F+ + +K++F+W S+I  + + G+ +  L LF  M    + P+ VT    L 
Sbjct: 261 HIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLP 320

Query: 359 ACGHAGLVDKGREIFESM--------ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410
           AC H   +  GREI   M        + + ++   +   A M D+  + GS+  ALK   
Sbjct: 321 ACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVM-DMYAKCGSMNNALKIFD 379

Query: 411 EMPEKPNSDVWAALLSSCRLH 431
            M +K  +  W  ++    +H
Sbjct: 380 SMSKKDVAS-WNIMIMGYGMH 399



 Score = 49.3 bits (116), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 41/168 (24%), Positives = 81/168 (48%), Gaps = 10/168 (5%)

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVF-DHMQQKNVFTWTSM 321
           +   K  ++H  +I   F       ++L++MY+KCG++ +A  VF D   ++NVF + ++
Sbjct: 25  QNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHERNVFAYNAI 84

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDK--GREIFESMERD 379
           I G+  NG  ++  + +  M+   V P+  TF   +  C     V K  G  +   +E D
Sbjct: 85  ISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVMEVKKIHGCLLKMGLELD 144

Query: 380 YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
             +       + +V+   + GS+E A K   E+  + +  +W A+++ 
Sbjct: 145 VFVG------SALVNTYLKNGSMEDAQKVFGELSIR-DVVLWNAMING 185


>gi|125577630|gb|EAZ18852.1| hypothetical protein OsJ_34389 [Oryza sativa Japonica Group]
          Length = 587

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 149/437 (34%), Positives = 242/437 (55%), Gaps = 15/437 (3%)

Query: 64  GLKIHAHITKTGVKP-NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G +IH+   + G  P +  +S   L ++ K G LK A  +F E+P R + A+N ++   +
Sbjct: 30  GPQIHSLAIRFGYLPVDPFVSCAALDMYFKTGRLKLARHLFGEMPNRNVVAWNAVMTNAV 89

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            +G+  E++     L  +G  P+  +      A   C   + L  +LG   H  ++KC  
Sbjct: 90  LDGRPLETIEAYFGLREAGGLPNVVSACAFFNA---CAGAMYL--SLGEQFHGFVVKCGF 144

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-- 240
           + D  +  ++VD Y K      AR VFD M  +N +   SM++ +   G  E+A   +  
Sbjct: 145 EMDVSVLNSMVDFYGKCRCAGKARAVFDGMGVRNSVSWCSMVAAYAQNGAEEEAFAAYLG 204

Query: 241 -RKTVEK--DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
            R++ E+  D +V +A+     +      +AL  H   +++    ++ + SALVDMY KC
Sbjct: 205 ARRSGEEPTDFMVSSALTTCAGLLGLHLGRAL--HAVAVRSCIDANIFVASALVDMYGKC 262

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC-MMQECCVQPNYVTFLGA 356
           G ++DA ++F    Q+N+ TW +MI GY   G+   AL +F  M++     PNY+T +  
Sbjct: 263 GCVEDAEQIFYETPQRNLVTWNAMIGGYAHIGDAQNALLVFDDMIRSGETAPNYITLVNV 322

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           +++C   GL   G E+FE+M   + ++P+ EHYAC+VDLLGRAG  EQA + +  MP +P
Sbjct: 323 ITSCSRGGLTKDGYELFETMRERFGIEPRTEHYACVVDLLGRAGMEEQAYEVIQGMPMRP 382

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
           +  VW ALL +C++H   E+  IAA ++F+L+  D  G +V LSN  A+AG+W   T++R
Sbjct: 383 SISVWGALLGACKMHGKTELGRIAAEKLFELDPQD-SGNHVLLSNMFASAGRWAEATDIR 441

Query: 477 EKMKLRGVLKDTGCSWV 493
           ++MK  G+ KD GCSWV
Sbjct: 442 KEMKNVGIKKDPGCSWV 458


>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
 gi|194688792|gb|ACF78480.1| unknown [Zea mays]
          Length = 706

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 141/438 (32%), Positives = 242/438 (55%), Gaps = 11/438 (2%)

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           +++   + ++G +PN      +L   +K   +  A  MFD++P+ +++ +N +++GY + 
Sbjct: 236 MEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVTTWNTLLSGYGQE 295

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
              +E++ L R++     +PD  T ++IL  S+C R        LG+ VH+  ++  +  
Sbjct: 296 ELHQETIDLFRRMQHQNVQPDRTTLAVIL--SSCSRLG---NFELGKQVHSASVRLLLHN 350

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
           D  + + L+D Y K G+   A I+F+MM E++V+C  SMISG       E+A +  ++  
Sbjct: 351 DMFVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMR 410

Query: 245 EKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           E  +      Y +MI      + +  +  ++H Q++K+ + ++V +G +L+DMYAK G +
Sbjct: 411 ENGMFPTESSYASMIN-LCARLSSIPQGRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNM 469

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           DDAR  F+ M  KN+  W  MI GY +NG   +A+ELF  M     +P+ VTF+  L+ C
Sbjct: 470 DDARLFFNCMIVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGC 529

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            H+GLVD+    F SME +Y + P +EHY C++D L RA    +    + +MP K +  +
Sbjct: 530 SHSGLVDEAVTFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDPIL 589

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W  LL++C +H + E+   +A  +F+L+  + P  YV LSN  A  G+    + +R  M 
Sbjct: 590 WEVLLAACVVHHNAELGEFSAKHLFRLDPKN-PSPYVLLSNIYATLGRHGDASAVRALMS 648

Query: 481 LRGVLKDTGCSWVGTESG 498
            RGV+K  G SWV  + G
Sbjct: 649 SRGVVKGRGYSWVNHKDG 666



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 162/346 (46%), Gaps = 24/346 (6%)

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           +P R   ++N +IA   ++G   E+L + + ++  G  P  +T + +L A   C +   L
Sbjct: 1   MPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSA---CGAVAAL 57

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
             + GR  H   +K  +     +   L+  Y K G  + A  +FD M   N +  T+M+ 
Sbjct: 58  --DDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMG 115

Query: 226 GFMSQGFVEDAEEIF----RKTVEKDIV----VYNAMIEGYSISIETARK---ALEVHCQ 274
           G    G V+DA  +F    R  +  D V    V  A  +  +     AR    A  +H  
Sbjct: 116 GLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHAL 175

Query: 275 LIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQA 334
           +++  F  D  +G++LVD+YAK  K+D+A +VF+ +   ++ +W  +I GYG+ G   +A
Sbjct: 176 VVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERA 235

Query: 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394
           +E+   MQE   +PN VT+   L++C  A  V   R +F+ +      KP +  +  ++ 
Sbjct: 236 MEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIP-----KPSVTTWNTLLS 290

Query: 395 LLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSCRLHDDVEMA 437
             G+    ++ +     M     +P+    A +LSSC    + E+ 
Sbjct: 291 GYGQEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELG 336



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/380 (23%), Positives = 172/380 (45%), Gaps = 43/380 (11%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G + H    K G+  +  +   LL ++ KCG++  A ++FD +P     ++  M+ G  +
Sbjct: 60  GRRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQ 119

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKA-STCCRSNVPLPR--NLGRMVHAQILKC 180
            G V+++L L  ++  +G R D    S +L A +  C  +  + R   L + +HA +++ 
Sbjct: 120 GGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRK 179

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
              +D  +  +LVD Y KG K                               +++A ++F
Sbjct: 180 GFGSDQHVGNSLVDLYAKGMK-------------------------------MDEAIKVF 208

Query: 241 RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
                  IV +N +I GY   +    +A+EV  + ++   FE  ++     +M A C K 
Sbjct: 209 ESLSSVSIVSWNILITGYG-QLGCYERAMEV-LEFMQESGFEPNEV--TYSNMLASCIKA 264

Query: 301 DD---ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
            D   AR +FD + + +V TW +++ GYG+     + ++LF  MQ   VQP+  T    L
Sbjct: 265 RDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVIL 324

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           S+C   G  + G+++  +  R   +   M   + ++D+  + G +  AL  +  M  + +
Sbjct: 325 SSCSRLGNFELGKQVHSASVR-LLLHNDMFVASGLIDIYSKCGQVGIAL-IIFNMMTERD 382

Query: 418 SDVWAALLSSCRLHDDVEMA 437
              W +++S   +H   E A
Sbjct: 383 VVCWNSMISGLAIHSLSEEA 402



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 50/90 (55%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA + K G   N  +   L+ ++ K G +  A   F+ +  + L A+N MI GY +
Sbjct: 437 GRQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDARLFFNCMIVKNLVAWNEMIHGYAQ 496

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
           NG  E+++ L   ++++ ++PD  TF  +L
Sbjct: 497 NGFGEKAVELFEYMLTTKQKPDSVTFIAVL 526


>gi|125572419|gb|EAZ13934.1| hypothetical protein OsJ_03861 [Oryza sativa Japonica Group]
          Length = 1031

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 169/502 (33%), Positives = 267/502 (53%), Gaps = 51/502 (10%)

Query: 22   LVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTN 81
            +VP N TFP  L+          A +  +AL           G ++H HITK G+  +  
Sbjct: 548  MVPDNLTFPFILK----------ACARINALNE---------GEQMHNHITKLGLLSDIF 588

Query: 82   ISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG 141
            +S  L+ L+  CG L YA  +FDE+  + + ++N +I GY +  + ++ L+L + + + G
Sbjct: 589  VSNSLIHLYAACGNLCYARSVFDEMVVKDVVSWNSLICGYSQCNRFKDILALFKLMQNEG 648

Query: 142  ERPDGYTFSMILKAST------------------CCRSNVPLPRNL-------GRMVHAQ 176
             + D  T   ++ A T                  C   +V L   L       G++  A+
Sbjct: 649  VKADKVTMIKVVSACTRLGDYSMADYMVRYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAE 708

Query: 177  ILKCDVKADDVL-YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
             +  ++K  +++   A++ +Y KG     AR +FD + +K++I  +SMISG+       D
Sbjct: 709  KVFFNMKVRNIVTMNAMIAAYAKGQDIVSARKIFDQIPKKDLISWSSMISGYSQANHFSD 768

Query: 236  AEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFEDVKLGSALV 291
            A EIFR+ +++  V  +A++    +S      AL+    VH  + +N    D  + ++L+
Sbjct: 769  ALEIFRQ-MQRAKVKPDAIVIASVVSSCAHLGALDLGKWVHEYVRRNNIKADTIMENSLI 827

Query: 292  DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
            DMY KCG   +A +VF  M++K+  +W S+I G   NG   ++L LF  M     +PN V
Sbjct: 828  DMYMKCGSAKEALQVFKEMKEKDTLSWNSIIIGLANNGFEKESLNLFQAMLTEGFRPNGV 887

Query: 352  TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
            TFLG L AC +A LV++G + FESM+R YS++P+M+HY C+VDLLGRAG LE+AL+F+ E
Sbjct: 888  TFLGVLIACANAKLVEEGLDHFESMKRLYSLEPQMKHYGCVVDLLGRAGQLEKALRFITE 947

Query: 412  MPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471
            MP  P+  VW  LL SC  H DV +A I   ++ +L  ++  G Y  LSN  A+A +W  
Sbjct: 948  MPIDPDPVVWRILLGSCNTHGDVAIAEIVTKKLNELEPSN-SGNYTLLSNAYASAHRWSE 1006

Query: 472  VTELREKMKLRGVLKDTGCSWV 493
               +R+ M    V K  GCS V
Sbjct: 1007 AMNVRQCMADTDVRKSPGCSAV 1028



 Score =  194 bits (494), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 122/425 (28%), Positives = 214/425 (50%), Gaps = 50/425 (11%)

Query: 99  AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
           A Q+FD  P    + ++ ++  Y      +++L L R         D Y F+  LKA   
Sbjct: 47  AHQVFDRRP----TPWHALLKAYSHGPHPQDALQLFRH-ARWHAADDTYAFTFALKAC-- 99

Query: 159 CRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI 218
             + +  PR   ++ H  +++   +    ++TALV+ Y+  G  + +R+ F+ M  KN +
Sbjct: 100 --AGLGWPRCCMQL-HGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAV 156

Query: 219 CSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETAR------------ 266
               +I+GF   G VE A  +F +   +++V ++ MI+GY+ +                 
Sbjct: 157 SWNVVITGFAGWGEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEG 216

Query: 267 ------------------------KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
                                   +AL  +C+  K     DV++G++L+D+YAK G I +
Sbjct: 217 ISPSEITVLAVVPALSNVGKILIGEALHGYCE--KEGLVWDVRVGNSLIDLYAKIGSIQN 274

Query: 303 ARRVFDHM-QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           + RVFD M  ++N+ +WTS+I G+  +G   +A+ELF  M+   ++PN +TFL  L AC 
Sbjct: 275 SLRVFDEMLDRRNLVSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACS 334

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
           H GLV++G   F+SM  +Y++ P ++H+ C++D+LGRAG L +A + + + P + N+ VW
Sbjct: 335 HGGLVEQGVAFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVW 394

Query: 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
             LL  C  + +VEM      +I  L   +  G +V LSN L    ++     +R+ +  
Sbjct: 395 RTLLGCCSKYGEVEMGERTMKKILALE-REFGGDFVVLSNMLTELRRFSDAEIVRKLVDQ 453

Query: 482 RGVLK 486
           R  +K
Sbjct: 454 RNSVK 458



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/432 (25%), Positives = 196/432 (45%), Gaps = 43/432 (9%)

Query: 96  LKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           L +A ++FD++   T   +N +I G  ++    ++++  +K    G  PD  TF  ILKA
Sbjct: 502 LVFAHKVFDQIEAPTTFLWNILIRGLAQSDAPADAIAFYKKAQGGGMVPDNLTFPFILKA 561

Query: 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
             C R N     N G  +H  I K  + +D  +  +L+  Y   G   YAR VFD M+ K
Sbjct: 562 --CARINA---LNEGEQMHNHITKLGLLSDIFVSNSLIHLYAACGNLCYARSVFDEMVVK 616

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFR----KTVEKD----IVVYNA-------------- 253
           +V+   S+I G+      +D   +F+    + V+ D    I V +A              
Sbjct: 617 DVVSWNSLICGYSQCNRFKDILALFKLMQNEGVKADKVTMIKVVSACTRLGDYSMADYMV 676

Query: 254 -MIEGYSISIET-----------ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
             IE Y I ++             R  L+   ++  N+   ++   +A++  YAK   I 
Sbjct: 677 RYIEDYCIEVDVYLGNTLVDYFGRRGQLQSAEKVFFNMKVRNIVTMNAMIAAYAKGQDIV 736

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            AR++FD + +K++ +W+SMI GY +  + + ALE+F  MQ   V+P+ +     +S+C 
Sbjct: 737 SARKIFDQIPKKDLISWSSMISGYSQANHFSDALEIFRQMQRAKVKPDAIVIASVVSSCA 796

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN---S 418
           H G +D G+ + E + R+ ++K        ++D+  + GS ++AL+   EM EK     +
Sbjct: 797 HLGALDLGKWVHEYVRRN-NIKADTIMENSLIDMYMKCGSAKEALQVFKEMKEKDTLSWN 855

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            +   L ++    + + +      E F+ N     G  +A +N        D    ++  
Sbjct: 856 SIIIGLANNGFEKESLNLFQAMLTEGFRPNGVTFLGVLIACANAKLVEEGLDHFESMKRL 915

Query: 479 MKLRGVLKDTGC 490
             L   +K  GC
Sbjct: 916 YSLEPQMKHYGC 927



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 135/302 (44%), Gaps = 42/302 (13%)

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           +++H  + + G +  T +   L+ +++ CG L  +   F+E+P +   ++N +I G+   
Sbjct: 109 MQLHGLVVRKGFEFQTYVHTALVNVYILCGCLADSRMAFEEMPVKNAVSWNVVITGFAGW 168

Query: 125 GQVEESLSLV-----RKLVSSGERPDGYTFSM----------------ILKASTCCRSNV 163
           G+VE +  L      R +VS     DGYT +                 I  +     + V
Sbjct: 169 GEVEYARLLFERMPCRNVVSWSGMIDGYTRACRPVEAVALFRRMMAEGISPSEITVLAVV 228

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLY-----TALVDSYVKGGKTSYARIVFDMMLE-KNV 217
           P   N+G+++  + L    + + +++      +L+D Y K G    +  VFD ML+ +N+
Sbjct: 229 PALSNVGKILIGEALHGYCEKEGLVWDVRVGNSLIDLYAKIGSIQNSLRVFDEMLDRRNL 288

Query: 218 ICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHC 273
           +  TS+ISGF   G    A E+F    R  +  + + + +++   S         +E   
Sbjct: 289 VSWTSIISGFAMHGLSVKAVELFADMRRAGIRPNRITFLSVLHACSHG-----GLVEQGV 343

Query: 274 QLIKNVFFE-----DVKLGSALVDMYAKCGKIDDARRVF-DHMQQKNVFTWTSMIDGYGK 327
              K++ +E     DVK    ++DM  + G++ +A ++  D   + N   W +++    K
Sbjct: 344 AFFKSMIYEYNINPDVKHFGCIIDMLGRAGRLREAEQIIRDFPVEVNATVWRTLLGCCSK 403

Query: 328 NG 329
            G
Sbjct: 404 YG 405


>gi|15226299|ref|NP_178260.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216969|sp|Q9ZVF4.1|PP140_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g01510, mitochondrial; Flags: Precursor
 gi|3785980|gb|AAC67327.1| hypothetical protein [Arabidopsis thaliana]
 gi|330250369|gb|AEC05463.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 584

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 162/465 (34%), Positives = 257/465 (55%), Gaps = 15/465 (3%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
            PLT   L   L+   +S  P    KIHA + +TG     ++  +LL   +  G + YA 
Sbjct: 6   TPLTKQMLSELLR--ASSSKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYAR 63

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           Q+FDE+ +  +  +N +  GY++N    ESL L +K+   G RPD +T+  ++KA +   
Sbjct: 64  QVFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLG 123

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
                  + G  +HA ++K       ++ T LV  Y+K G+ S A  +F+ M  K+++  
Sbjct: 124 DF-----SCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAW 178

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVF 280
            + ++  +  G    A E F K    D V +++      +S      +LE+  ++     
Sbjct: 179 NAFLAVCVQTGNSAIALEYFNKMC-ADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRAR 237

Query: 281 FEDVK----LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
            E++     + +A +DM+ KCG  + AR +F+ M+Q+NV +W++MI GY  NG+  +AL 
Sbjct: 238 KEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALT 297

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM--ERDYSMKPKMEHYACMVD 394
           LF  MQ   ++PNYVTFLG LSAC HAGLV++G+  F  M    D +++P+ EHYACMVD
Sbjct: 298 LFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVD 357

Query: 395 LLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG 454
           LLGR+G LE+A +F+ +MP +P++ +W ALL +C +H D+ +    A+ + +  A D   
Sbjct: 358 LLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVE-TAPDIGS 416

Query: 455 AYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
            +V LSN  AAAGKWD V ++R KM+  G  K    S V  E  +
Sbjct: 417 YHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKI 461


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 138/434 (31%), Positives = 236/434 (54%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           GLKIH+ + K G   +  +   LL L++KC     A ++FD++P + + ++  +I GY+ 
Sbjct: 133 GLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYIS 192

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G   E++   +KL+  G +PD ++   +L A  C R         G  +   I    + 
Sbjct: 193 SGHFREAIGAFKKLLEMGLKPDSFSLVKVLAA--CARLG---DCTSGEWIDRYISDSGMG 247

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +  + T+L+D YVK G    A ++F  M EK+++  ++MI G+   G  + A ++F + 
Sbjct: 248 RNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQM 307

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQ----LIKNVFFEDVKLGSALVDMYAKCGK 299
             +++      + G  +S      AL++       + +N F  +  LG+AL+DMY+KCG 
Sbjct: 308 QSENLKPDCYTMVGV-LSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGS 366

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +  A  +F  M++K+   W +M+ G   NG+      LF ++++  ++P+  TF+G L  
Sbjct: 367 VTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCG 426

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H G V++GR+ F +M+R +S+ P +EHY CMVDLLGRAG L +A + +  MP KPN+ 
Sbjct: 427 CTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAV 486

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW ALL  C+LH D  +A     ++ +L   +  G YV LSN  +   +W+   ++R  M
Sbjct: 487 VWGALLGGCKLHKDTHLAEQVLKKLIELEPWN-SGNYVQLSNIYSGNHRWEEAEKIRSTM 545

Query: 480 KLRGVLKDTGCSWV 493
           K + + K   CSW+
Sbjct: 546 KEQQIQKIRACSWI 559



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 111/397 (27%), Positives = 202/397 (50%), Gaps = 26/397 (6%)

Query: 40  SNPLTATSLPSALQHYINSDTPFYG-LK-IHAHITKTGVKPNTNISIKLLILHLKCGALK 97
           S+P+ + +L   +++Y+++   F+  LK IHA + +  +  +  +   +L   L  G+  
Sbjct: 8   SSPVFSKALE--IKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTN 65

Query: 98  YAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           Y+  +F ++ +  +  +N MI G +     ++++ L   +   G  P+ +T   +LKA  
Sbjct: 66  YSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKA-- 123

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
           C R    L   LG  +H+ ++K     D  + T+L+  YVK      A  VFD + +KNV
Sbjct: 124 CARK---LDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNV 180

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKTVEKDI---------VVYNAMIEGYSISIETARKA 268
           +  T++I+G++S G   +A   F+K +E  +         V+      G   S E   + 
Sbjct: 181 VSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRY 240

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
           +     + +NVF     + ++L+DMY KCG ++ A  +F  M +K++ +W++MI GY  N
Sbjct: 241 IS-DSGMGRNVF-----VATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFN 294

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G P QAL+LF  MQ   ++P+  T +G LSAC   G +D G      M+R+  +   +  
Sbjct: 295 GLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPVLG 354

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
            A ++D+  + GS+ QA +    M +K +  VW A++
Sbjct: 355 TA-LIDMYSKCGSVTQAWEIFTAM-KKKDRVVWNAMM 389


>gi|414873128|tpg|DAA51685.1| TPA: hypothetical protein ZEAMMB73_445170 [Zea mays]
          Length = 987

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 147/498 (29%), Positives = 259/498 (52%), Gaps = 75/498 (15%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G K+H  + K G+     ++  +L ++ KCG  + A  +F+ +  R++S++N M++ Y  
Sbjct: 366 GRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMQVRSVSSWNVMVSLYTH 425

Query: 124 NGQVEESLSLV--------------------------------RKLVSSGERPDGYTFSM 151
            G++E ++S+                                 R L +S   PD +T + 
Sbjct: 426 QGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMALKFFSRMLSASSMEPDAFTVTS 485

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFD- 210
           +L A    R        +G+ +H+ IL+  +     +  AL+ +Y K G    AR + D 
Sbjct: 486 VLSACANLRM-----LKMGKQMHSYILRTGMPCSSQIMNALISTYAKSGSVETARRIMDQ 540

Query: 211 -MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI------SIE 263
            ++ + NVI  T+++ G++  G  + A EIF     +D++ + AMI GY        ++E
Sbjct: 541 AVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNNRDVIAWTAMIVGYHQNGQNDEAME 600

Query: 264 TARKAL----------------------------EVHCQLIKNVFFEDVKLGSALVDMYA 295
             R  +                            ++HC+ I+++  + V + +A++ +YA
Sbjct: 601 LFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQIHCKAIRSLQEQSVSVSNAIITVYA 660

Query: 296 KCGKIDDARRVFDHM-QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           + G +  ARRVFD +  +K   TWTSMI    ++G   QA+ LF  M    V+P+++T++
Sbjct: 661 RSGSVPLARRVFDQICWRKETITWTSMIVAMAQHGLGEQAVVLFEEMVRVGVKPDHITYV 720

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
           G LSAC HAG VDKG+  +E M+ ++ + P+M HYACMVDL  RAG L +A +F+  MP 
Sbjct: 721 GVLSACAHAGFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQRMPV 780

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
            P++ VW +LL++CR+  + ++A +AA ++  ++ ++  GAY AL+N  +A G+W+    
Sbjct: 781 APDTVVWGSLLAACRVRKNADLAELAAGKLLSIDPHN-SGAYSALANVYSACGRWNDAAR 839

Query: 475 LREKMKLRGVLKDTGCSW 492
           + +  K +GV K+TG SW
Sbjct: 840 IWKLRKDKGVKKETGFSW 857



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 112/468 (23%), Positives = 193/468 (41%), Gaps = 84/468 (17%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           LL L+ K G L  A  +F E+P R   ++  MI G  ++G+  +++     +VS G  P 
Sbjct: 287 LLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGFAPS 346

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK-----CDVKADDVLYTALVDSYVKGG 200
            +T + +L  S+C          +GR VH  ++K     C   A+ VLY      Y K G
Sbjct: 347 QFTLTNVL--SSCAAMEAC---GVGRKVHPFVVKLGLSSCVPVANSVLYM-----YGKCG 396

Query: 201 KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS- 259
               AR VF+ M  ++V     M+S +  QG +E A  +F   VE+ IV +N +I GY+ 
Sbjct: 397 DAETARAVFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQ 456

Query: 260 ----------------------------------ISIETARKALEVHCQLIKNVFFEDVK 285
                                              ++   +   ++H  +++       +
Sbjct: 457 NGLDGMALKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRTGMPCSSQ 516

Query: 286 LGSALVDMYAKCGKIDDARR---------------------------------VFDHMQQ 312
           + +AL+  YAK G ++ ARR                                 +FD M  
Sbjct: 517 IMNALISTYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQAREIFDIMNN 576

Query: 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           ++V  WT+MI GY +NG  ++A+ELF  M     +PN  T    LSAC     +D G++I
Sbjct: 577 RDVIAWTAMIVGYHQNGQNDEAMELFRSMILIGPEPNSHTLAAVLSACASLAYLDYGKQI 636

Query: 373 FESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHD 432
                R    +  +     ++ +  R+GS+  A +   ++  +  +  W +++ +   H 
Sbjct: 637 HCKAIRSLQ-EQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAMAQHG 695

Query: 433 DVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
             E A +   E+ ++        YV + +  A AG  D      E+M+
Sbjct: 696 LGEQAVVLFEEMVRVGVKPDHITYVGVLSACAHAGFVDKGKRYYEQMQ 743



 Score = 75.5 bits (184), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 76/332 (22%), Positives = 137/332 (41%), Gaps = 43/332 (12%)

Query: 189 YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI 248
           + +L+  Y K G+   A +VF  M +++ +  T MI G    G   DA + F   V +  
Sbjct: 284 WNSLLSLYAKSGRLPDAHVVFAEMPDRDAVSWTIMIVGLNRSGRFWDAVKTFLDMVSEGF 343

Query: 249 VVYNAMIEGY---SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARR 305
                 +        ++E      +VH  ++K      V + ++++ MY KCG  + AR 
Sbjct: 344 APSQFTLTNVLSSCAAMEACGVGRKVHPFVVKLGLSSCVPVANSVLYMYGKCGDAETARA 403

Query: 306 VFDHMQ-------------------------------QKNVFTWTSMIDGYGKNGNPNQA 334
           VF+ MQ                               ++++ +W ++I GY +NG    A
Sbjct: 404 VFERMQVRSVSSWNVMVSLYTHQGRMELAVSMFENMVERSIVSWNTIIAGYNQNGLDGMA 463

Query: 335 LELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMV 393
           L+ F  M+    ++P+  T    LSAC +  ++  G+++   + R   M    +    ++
Sbjct: 464 LKFFSRMLSASSMEPDAFTVTSVLSACANLRMLKMGKQMHSYILRT-GMPCSSQIMNALI 522

Query: 394 DLLGRAGSLEQALKFVLE-MPEKPNSDVWAALLSS-CRLHDDVEMANIAANEIFKLNAND 451
               ++GS+E A + + + +    N   + ALL    +L D  +     A EIF +  N 
Sbjct: 523 STYAKSGSVETARRIMDQAVVADLNVISFTALLEGYVKLGDTKQ-----AREIFDIMNNR 577

Query: 452 RPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483
              A+ A+       G+ D   EL   M L G
Sbjct: 578 DVIAWTAMIVGYHQNGQNDEAMELFRSMILIG 609



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 56/277 (20%), Positives = 112/277 (40%), Gaps = 70/277 (25%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLS-AYNYMIAGY 121
           YG +IH    ++  + + ++S  ++ ++ + G++  A ++FD++  R  +  +  MI   
Sbjct: 632 YGKQIHCKAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETITWTSMIVAM 691

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            ++G  E+++ L  ++V  G +PD  T+  +L A                  HA      
Sbjct: 692 AQHGLGEQAVVLFEEMVRVGVKPDHITYVGVLSACA----------------HA------ 729

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE-IF 240
                         +V  GK  Y ++  +  +   +     M+      G + +A E I 
Sbjct: 730 -------------GFVDKGKRYYEQMQNEHGIVPQMSHYACMVDLHARAGLLTEAHEFIQ 776

Query: 241 RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG------------- 287
           R  V  D VV+ +++                 C++ KN    ++  G             
Sbjct: 777 RMPVAPDTVVWGSLLAA---------------CRVRKNADLAELAAGKLLSIDPHNSGAY 821

Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNV-----FTWT 319
           SAL ++Y+ CG+ +DA R++   + K V     F+WT
Sbjct: 822 SALANVYSACGRWNDAARIWKLRKDKGVKKETGFSWT 858


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 138/434 (31%), Positives = 236/434 (54%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           GLKIH+ + K G   +  +   LL L++KC     A ++FD++P + + ++  +I GY+ 
Sbjct: 133 GLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAIITGYIS 192

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G   E++   +KL+  G +PD ++   +L A  C R         G  +   I    + 
Sbjct: 193 SGHFREAIGAFKKLLEMGLKPDSFSLVKVLAA--CARLG---DCTSGEWIDRYISDSGMG 247

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +  + T+L+D YVK G    A ++F  M EK+++  ++MI G+   G  + A ++F + 
Sbjct: 248 RNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFFQM 307

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQ----LIKNVFFEDVKLGSALVDMYAKCGK 299
             +++      + G  +S      AL++       + +N F  +  LG+AL+DMY+KCG 
Sbjct: 308 QSENLKPDCYTMVGV-LSACATLGALDLGIWASSLMDRNEFLSNPVLGTALIDMYSKCGS 366

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +  A  +F  M++K+   W +M+ G   NG+      LF ++++  ++P+  TF+G L  
Sbjct: 367 VTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFIGLLCG 426

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H G V++GR+ F +M+R +S+ P +EHY CMVDLLGRAG L +A + +  MP KPN+ 
Sbjct: 427 CTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPMKPNAV 486

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW ALL  C+LH D  +A     ++ +L   +  G YV LSN  +   +W+   ++R  M
Sbjct: 487 VWGALLGGCKLHKDTHLAEQVLKKLIELEPWN-SGNYVQLSNIYSGNHRWEEAEKIRSTM 545

Query: 480 KLRGVLKDTGCSWV 493
           K + + K   CSW+
Sbjct: 546 KEQQIQKIRACSWI 559



 Score =  148 bits (373), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 111/399 (27%), Positives = 202/399 (50%), Gaps = 26/399 (6%)

Query: 38  SLSNPLTATSLPSALQHYINSDTPFYG-LK-IHAHITKTGVKPNTNISIKLLILHLKCGA 95
           S ++P+ + +L   +++Y+++   F+  LK IHA + +  +  +  +   +L   L  G+
Sbjct: 6   SPTSPVFSKALE--IKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGS 63

Query: 96  LKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
             Y+  +F ++ +  +  +N MI G +     ++++ L   +   G  P+ +T   +LKA
Sbjct: 64  TNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKA 123

Query: 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
             C R    L   LG  +H+ ++K     D  + T+L+  YVK      A  VFD + +K
Sbjct: 124 --CARK---LDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDK 178

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI---------VVYNAMIEGYSISIETAR 266
           NV+  T++I+G++S G   +A   F+K +E  +         V+      G   S E   
Sbjct: 179 NVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWID 238

Query: 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
           + +     + +NVF     + ++L+DMY KCG ++ A  +F  M +K++ +W++MI GY 
Sbjct: 239 RYIS-DSGMGRNVF-----VATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYA 292

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM 386
            NG P QAL+LF  MQ   ++P+  T +G LSAC   G +D G      M+R+  +   +
Sbjct: 293 FNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPV 352

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
              A ++D+  + GS+ QA +    M  K +  VW A++
Sbjct: 353 LGTA-LIDMYSKCGSVTQAWEIFTAMKRK-DRVVWNAMM 389


>gi|108864632|gb|ABG22571.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 692

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 148/463 (31%), Positives = 241/463 (52%), Gaps = 42/463 (9%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +HA I K G+  +      L+  + K   L  A  +FDE P+R +  Y+ ++     +  
Sbjct: 107 MHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSAS 166

Query: 127 VEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
            E +L ++R ++S+    PD +  S +       RS     R LGR +HA  +      D
Sbjct: 167 PELALPILRCMLSADALHPDHFVISSVASVFARLRS-----RRLGRQLHAHFVVSPYNGD 221

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
           DV+ ++LVD Y K G     R VFD M  KN +  T+++SG+ S G  E+A ++FR    
Sbjct: 222 DVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPG 281

Query: 246 KDIVVYNAMIEGY----------SISIETARKALEV------------------------ 271
           +++  + A+I G            + +E  R  + +                        
Sbjct: 282 RNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQ 341

Query: 272 -HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
            H   ++  F  ++ +G+AL+DMY+KC  I  AR VF+ +  ++V +WT+M+ G  ++G 
Sbjct: 342 LHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGR 401

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
             +AL L+  M     +PN VTF+G + AC HAGLV KGR++FESM+ +Y + P+++HY 
Sbjct: 402 AEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYT 461

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
           C +DLL R+G L +A + +  MP +P+   W ALLS+C  + D EM    ++++ +L   
Sbjct: 462 CYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPK 521

Query: 451 DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           D    Y+ LSN  A  GKWDSV ++R+ M    + K+ G SW+
Sbjct: 522 D-SSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWI 563



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 135/334 (40%), Gaps = 77/334 (23%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HAH   +    +  +   L+ ++ KCG+     ++FD +  +    +  +++GY  
Sbjct: 206 GRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYAS 265

Query: 124 NGQVEESLSLVRK---------------LVSSGE-----------RPDG------YTFSM 151
           NG+ EE+L L R                LV++GE           R DG      +  S+
Sbjct: 266 NGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSI 325

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           ++  S    + V     LGR +H   ++    ++ ++  AL+D Y K      AR VF+ 
Sbjct: 326 VIGGSADLAAFV-----LGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEG 380

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV 271
           +  ++VI  T+M+ G    G  E+A           + +Y+ M+   +   E     L  
Sbjct: 381 ITFRDVISWTTMVVGEAQHGRAEEA-----------LALYDRMVLAGAKPNEVTFVGLIY 429

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT-----WTSMIDGYG 326
            C                     +  G +   R++F+ M+ +   T     +T  +D   
Sbjct: 430 AC---------------------SHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLS 468

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           ++G+  +A EL   M     +P+  T+   LSAC
Sbjct: 469 RSGHLLEAEELMTTMP---YEPDEATWGALLSAC 499


>gi|296080932|emb|CBI18728.3| unnamed protein product [Vitis vinifera]
          Length = 607

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 165/472 (34%), Positives = 259/472 (54%), Gaps = 27/472 (5%)

Query: 37  DSLSNPLTATSLP-----SALQH--YINSDTPFYGLKIHAHITKTGVKPNTNISIKLLIL 89
           +S SNP +  SL      S LQ   +IN   P     IHA + + G   +  +  +LL  
Sbjct: 19  NSNSNPKSLKSLDQKQIISLLQRSKHINQVLP-----IHAQLIRNGHSQDPFMVFELLRS 73

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149
             KC A+ YA ++F       +  Y  +I G++ +G   +++ L  +++     PD Y  
Sbjct: 74  CSKCHAIDYASRIFQYTHNPNVYLYTALIDGFVSSGNYFDAIQLYSRMLHDSILPDNYLM 133

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVF 209
           + ILKA   C S + L    GR VH++ LK  + ++ ++   +++ Y K G+   AR VF
Sbjct: 134 ASILKA---CGSQLALRE--GREVHSRALKLGLSSNRLVRLRIMELYGKCGELGDARRVF 188

Query: 210 DMMLE----KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETA 265
           + M E    K+ +C T+MI GF+    +  A E FR  ++ + V  N       +S  + 
Sbjct: 189 EEMPEDVVAKDTVCWTAMIDGFVRNEEMNRALEAFR-GMQGENVRPNEFTIVCVLSACSQ 247

Query: 266 RKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
             ALE    VH  + K     ++ +G+AL++MY++CG ID+A+ VFD M+ ++V T+ +M
Sbjct: 248 LGALEIGRWVHSYMRKFEIELNLFVGNALINMYSRCGSIDEAQTVFDEMKDRDVITYNTM 307

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           I G   NG   QA+ELF +M    ++P  VTF+G L+AC H GLVD G +IF SM RDY 
Sbjct: 308 ISGLSMNGKSRQAIELFRVMIGRRLRPTNVTFVGVLNACSHGGLVDFGFKIFHSMTRDYG 367

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441
           ++P++EHY CMVDLLGR G LE+A   +  M   P+  +   LLS+C++H ++E+    A
Sbjct: 368 VEPQIEHYGCMVDLLGRVGRLEEAYDLIRTMKMTPDHIMLGTLLSACKMHKNLELGEQVA 427

Query: 442 NEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            ++ +       G YV LS+  A++GKW    ++R KMK  G+ K+ GCS +
Sbjct: 428 -KVLEDRGQADSGTYVLLSHVYASSGKWKEAAQVRAKMKEAGMQKEPGCSSI 478


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 156/447 (34%), Positives = 250/447 (55%), Gaps = 23/447 (5%)

Query: 64  GLKIHAHITKTG-VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G ++HA+  K G +  N+ +   L+ ++  C  +    ++FD +  R +  +N MIAGY 
Sbjct: 234 GKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYS 293

Query: 123 KNGQVEESLSLVRKLV-SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           +N   +E+L L   +  S+G   +  T + ++ A  C RS     R     +H  ++K  
Sbjct: 294 QNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA--CVRSG-AFSRK--EAIHGFVVKRG 348

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +  D  +   L+D Y + GK   A  +F  M +++++   +MI+G++     EDA  +  
Sbjct: 349 LDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLH 408

Query: 242 K--TVEKDIV--VYNAMIEGYSISIETA----------RKALEVHCQLIKNVFFEDVKLG 287
           K   +E+ +        ++  SI++ T            K  E+H   IKN    DV +G
Sbjct: 409 KMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVG 468

Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347
           SALVDMYAKCG +  +R+VFD + QKNV TW  +I  YG +GN  +A++L  MM    V+
Sbjct: 469 SALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVK 528

Query: 348 PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALK 407
           PN VTF+   +AC H+G+VD+G  IF  M+ DY ++P  +HYAC+VDLLGRAG +++A +
Sbjct: 529 PNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQ 588

Query: 408 FVLEMPEKPN-SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
            +  MP   N +  W++LL + R+H+++E+  IAA  + +L  N     YV L+N  ++A
Sbjct: 589 LMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPN-VASHYVLLANIYSSA 647

Query: 467 GKWDSVTELREKMKLRGVLKDTGCSWV 493
           G WD  TE+R  MK +GV K+ GCSW+
Sbjct: 648 GLWDKATEVRRNMKEQGVRKEPGCSWI 674



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/383 (25%), Positives = 184/383 (48%), Gaps = 26/383 (6%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNT-NISIKLLILHLKCGALKYAGQMFDE 105
           + P+ L+   +      G +IHAH+ K G   ++  ++  L+ L+ KCG      ++FD 
Sbjct: 12  AFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDR 71

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           + +R   ++N +I+      + E +L   R ++     P  +T   ++   T C SN+P+
Sbjct: 72  ISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVV---TAC-SNLPM 127

Query: 166 PRNL--GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
           P  L  G+ VHA  L+   + +  +   LV  Y K GK + ++++      ++++   ++
Sbjct: 128 PEGLMMGKQVHAYGLR-KGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTV 186

Query: 224 ISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKN- 278
           +S       + +A E  R+     VE D    ++++   S  +E  R   E+H   +KN 
Sbjct: 187 LSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACS-HLEMLRTGKELHAYALKNG 245

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
              E+  +GSALVDMY  C ++   RRVFD M  + +  W +MI GY +N +  +AL LF
Sbjct: 246 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 305

Query: 339 CMMQECC-VQPNYVTFLGALSACGHAGLVDK-----GREIFESMERDYSMKPKMEHYACM 392
             M+E   +  N  T  G + AC  +G   +     G  +   ++RD  ++        +
Sbjct: 306 IGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNT------L 359

Query: 393 VDLLGRAGSLEQALKFVLEMPEK 415
           +D+  R G ++ A++   +M ++
Sbjct: 360 MDMYSRLGKIDIAMRIFGKMEDR 382



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/246 (26%), Positives = 111/246 (45%), Gaps = 19/246 (7%)

Query: 137 LVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV-LYTALVDS 195
           ++  G +PD Y F  +LKA    +        LG+ +HA + K     D V +   LV+ 
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQD-----MELGKQIHAHVYKFGYGVDSVTVANTLVNL 55

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMI 255
           Y K G       VFD + E+N +   S+IS   S    E A E FR  +++++   +  +
Sbjct: 56  YRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTL 115

Query: 256 EGYSISIETARKALEVHCQLI--KNVFFEDVKLG-------SALVDMYAKCGKIDDARRV 306
               +S+ TA   L +   L+  K V    ++ G       + LV MY K GK+  ++ +
Sbjct: 116 ----VSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGKLGKLASSKVL 171

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
                 +++ TW +++    +N    +ALE    M    V+P+  T    L AC H  ++
Sbjct: 172 LGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEML 231

Query: 367 DKGREI 372
             G+E+
Sbjct: 232 RTGKEL 237


>gi|449479818|ref|XP_004155716.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g08510-like [Cucumis sativus]
          Length = 512

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 154/471 (32%), Positives = 248/471 (52%), Gaps = 48/471 (10%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IHA+  + G+     +  KLL L      L YA  +FD++P+ ++  YN  I  +   G
Sbjct: 6   QIHAYSLRNGLDHTKFLIEKLLQL----PDLPYACTLFDQIPKPSVYLYNKFIQTFSSIG 61

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
                  L  ++ S G  P+ Y+F+ +  A     +  P     G+M+H+   K    +D
Sbjct: 62  HPHRCWLLYCQMCSQGCSPNQYSFTFLFPACASLFNVYP-----GQMLHSHFCKSGFASD 116

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
               TAL+D Y K G    AR +FD M  +++    S+I+G+   G +E A E+F K   
Sbjct: 117 MFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYARSGHMEAALELFNKMPV 176

Query: 246 KDIVVYNAMIEGYSISIETARKALEVHCQL------------------------------ 275
           ++++ + A+I GY+ + + A KALE+   L                              
Sbjct: 177 RNVISWTALISGYAQNGKYA-KALEMFIGLENEKGTKPNEVSIASVLPACSQLGALDIGK 235

Query: 276 ------IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM-QQKNVFTWTSMIDGYGKN 328
                   N FF++  + +A+++++A+CG I++A++VFD +  ++N+ +W +MI G   +
Sbjct: 236 RIEAYARNNGFFKNAYVSNAVLELHARCGNIEEAQQVFDEIGSKRNLCSWNTMIMGLAVH 295

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G    AL+L+  M    ++P+ VTF+G L AC H G+V +GR++FESME  + + PK+EH
Sbjct: 296 GRCIDALQLYDQMLIRKMRPDDVTFVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEH 355

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
           Y C+VDLLGRAG L++A   +  MP  P+S +W  LL +C  H +VE+  +AA  +FKL 
Sbjct: 356 YGCLVDLLGRAGELQEAYNLIQNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLE 415

Query: 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
             + PG YV LSN  A AG W  V  LR+ MK   + K  G S++    G+
Sbjct: 416 PWN-PGNYVILSNIYALAGDWSGVARLRKMMKGGHITKRAGYSYIEVGDGI 465



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 160/359 (44%), Gaps = 48/359 (13%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H+H  K+G   +      LL ++ K G L+ A Q+FDE+P R +  +N +IAGY +
Sbjct: 101 GQMLHSHFCKSGFASDMFAMTALLDMYAKLGMLRSARQLFDEMPVRDIPTWNSLIAGYAR 160

Query: 124 NGQVEESLSL-----VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
           +G +E +L L     VR ++S      GY              N    + L   +  +  
Sbjct: 161 SGHMEAALELFNKMPVRNVISWTALISGYA------------QNGKYAKALEMFIGLENE 208

Query: 179 KCDVKADDVLYTALVDSYVKGGK-------TSYARIVFDMMLEKNVICSTSMISGFMSQG 231
           K   K ++V   +++ +  + G         +YAR   +    KN   S +++      G
Sbjct: 209 K-GTKPNEVSIASVLPACSQLGALDIGKRIEAYAR---NNGFFKNAYVSNAVLELHARCG 264

Query: 232 FVEDAEEIFRKTVEK-DIVVYNAMIEGYSISIETARKALEVHCQ-LIKNVFFEDVKLGSA 289
            +E+A+++F +   K ++  +N MI G ++       AL+++ Q LI+ +  +DV     
Sbjct: 265 NIEEAQQVFDEIGSKRNLCSWNTMIMGLAVHGRCI-DALQLYDQMLIRKMRPDDV----T 319

Query: 290 LVDMYAKC---GKIDDARRVFDHMQQK-----NVFTWTSMIDGYGKNGNPNQALELFCMM 341
            V +   C   G + + R++F+ M+ K      +  +  ++D  G+ G   +A  L   +
Sbjct: 320 FVGLLLACTHGGMVAEGRQLFESMESKFQVAPKLEHYGCLVDLLGRAGELQEAYNL---I 376

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           Q   + P+ V +   L AC   G V+ G    ES+ +     P   +Y  + ++   AG
Sbjct: 377 QNMPMAPDSVIWGTLLGACSFHGNVELGEVAAESLFKLEPWNPG--NYVILSNIYALAG 433


>gi|259490042|ref|NP_001159140.1| hypothetical protein [Zea mays]
 gi|223942207|gb|ACN25187.1| unknown [Zea mays]
 gi|414585730|tpg|DAA36301.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 885

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 152/486 (31%), Positives = 264/486 (54%), Gaps = 41/486 (8%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L +T+  S+L       +  +G ++HA + +     +  ++  L+ L+ K G  K A  +
Sbjct: 288 LDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGV 347

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           F+ L  R   A+  +I+G+L+ G   ES+ L  ++ +     D +  + ++  S CC S 
Sbjct: 348 FNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLI--SGCC-SR 404

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
           + L   LGR +H+  LK       V+  +L+  Y K      A  +F  M EK+++  TS
Sbjct: 405 MDLC--LGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTS 462

Query: 223 MISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY---------------SISIETARK 267
           MI+ +   G V  A E F    EK+++ +NAM+  Y                +S E  R 
Sbjct: 463 MITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRP 522

Query: 268 ALEVHCQLIK------------NVFFEDVKLG--------SALVDMYAKCGKIDDARRVF 307
               +  L K             +    VK+G        +A++ MY+KCG+I +AR+VF
Sbjct: 523 DWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVF 582

Query: 308 DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367
           D +  K++ +W +MI GY ++G   QA+E+F  + +   +P+Y++++  LS C H+GLV 
Sbjct: 583 DFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQ 642

Query: 368 KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
           +G+  F+ M+R +++ P +EH++CMVDLLGRAG L +A   + +MP KP ++VW ALLS+
Sbjct: 643 EGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSA 702

Query: 428 CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487
           C++H + E+A +AA  +F+L++ D  G+Y+ ++   A AGK D   ++R+ M+ +G+ K+
Sbjct: 703 CKIHGNNELAELAAKHVFELDSPD-SGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKN 761

Query: 488 TGCSWV 493
            G SW+
Sbjct: 762 PGYSWM 767



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 186/401 (46%), Gaps = 48/401 (11%)

Query: 27  QTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKL 86
           +TF    ++ DS  N  T   L  A++           L++ A + K   + ++ ++  L
Sbjct: 143 ETFLSMHRSGDSWPNAFT---LACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAAL 199

Query: 87  LILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK----------------------- 123
           + + ++CGA+  A ++F  + + T+   N M+AGY+K                       
Sbjct: 200 VDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWN 259

Query: 124 --------NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA 175
                   +G+V E+L +V  + S G R D  T++  L A  C R +       G+ +HA
Sbjct: 260 MMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTA--CARLS---SLRWGKQLHA 314

Query: 176 QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
           Q+++     D  + +ALV+ Y K G    A+ VF+ + ++N +  T +ISGF+  G   +
Sbjct: 315 QVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTE 374

Query: 236 AEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVFFEDVKLGSALV 291
           + E+F + +  +++  +       IS   +R  L    ++H   +K+   + V + ++L+
Sbjct: 375 SVELFNQ-MRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLI 433

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
            MYAKC  +  A  +F  M +K++ +WTSMI  Y + GN  +A E F  M E     N +
Sbjct: 434 SMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSE----KNVI 489

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACM 392
           T+   L A    G  + G  +++ M  +  ++P    Y  +
Sbjct: 490 TWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTL 530



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 146/318 (45%), Gaps = 40/318 (12%)

Query: 78  PNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL 137
           PN      +L  + K G L  A ++F  +P R ++++N +++GY ++ Q   SL     +
Sbjct: 89  PNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSM 148

Query: 138 VSSGER-PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196
             SG+  P+ +T +  +K+      +     +L   + A + K D + D  +  ALVD +
Sbjct: 149 HRSGDSWPNAFTLACAMKSCGALGWH-----SLALQLLAMVQKFDSQDDSEVAAALVDMF 203

Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE 256
           V+ G    A  +F  + E  + C  SM++G++    V+ A E+F    E+D+V +N M+ 
Sbjct: 204 VRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVS 263

Query: 257 GYSIS----------------------------------IETARKALEVHCQLIKNVFFE 282
             S S                                  + + R   ++H Q+I+N+   
Sbjct: 264 ALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHI 323

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           D  + SALV++YAK G   +A+ VF+ +  +N   WT +I G+ + G   +++ELF  M+
Sbjct: 324 DPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMR 383

Query: 343 ECCVQPNYVTFLGALSAC 360
              +  +       +S C
Sbjct: 384 AELMTLDQFALATLISGC 401



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/322 (22%), Positives = 138/322 (42%), Gaps = 73/322 (22%)

Query: 174 HAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM-MLEKNVICSTSMISGFMSQGF 232
           H +++   + +   L   L+ +Y+  G  S AR +  M +   NVI    M++G+   G 
Sbjct: 47  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 106

Query: 233 VEDAEEIFRKTVEKDIVVYNAMIEGYS------ISIET-------------------ARK 267
           + DA E+F +   +D+  +N ++ GY       +S+ET                   A K
Sbjct: 107 LSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMK 166

Query: 268 ----------ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARR------------ 305
                     AL++   + K    +D ++ +ALVDM+ +CG +D A R            
Sbjct: 167 SCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFC 226

Query: 306 -------------------VFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
                              +FD M +++V +W  M+    ++G   +AL++   MQ   V
Sbjct: 227 RNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 286

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY--ACMVDLLGRAGSLEQ 404
           + +  T+  +L+AC     +  G+++   + R+    P ++ Y  + +V+L  ++G  ++
Sbjct: 287 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNL---PHIDPYVASALVELYAKSGCFKE 343

Query: 405 ALKFVLEMPEKPNSDVWAALLS 426
           A K V       N+  W  L+S
Sbjct: 344 A-KGVFNSLHDRNNVAWTVLIS 364


>gi|357436397|ref|XP_003588474.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477522|gb|AES58725.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 668

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 151/444 (34%), Positives = 254/444 (57%), Gaps = 16/444 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H H+  +  + +  I   +L ++ KCG+L+ A Q+FDE+  + +  +  MI GY +
Sbjct: 110 GKLVHTHLMNSKFRNDLVIKNSILFMYAKCGSLEIARQVFDEMCVKDVVTWTSMITGYSQ 169

Query: 124 NGQVEES---LSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
           +G    +   L L  ++V  G RP+ +  S ++K      S V      G+ +H    K 
Sbjct: 170 DGYASSATTALVLFLEMVRDGLRPNEFALSSLVKCCGFLGSCVD-----GKQIHGCCWKY 224

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
             + +  + ++LVD Y + G+   +R+VFD +  KN +   ++ISGF  +G  E+A  +F
Sbjct: 225 GFQENVFVGSSLVDMYARCGELRESRLVFDELESKNEVSWNALISGFARKGEGEEALGLF 284

Query: 241 RKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
            K   +        Y+A++   S +  +  +   +H  ++K+       +G+ L+ MYAK
Sbjct: 285 VKMQREGFGATEFTYSALLCSSSTT-GSLEQGKWLHAHMMKSGKKLVGYVGNTLLHMYAK 343

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC-MMQECCVQPNYVTFLG 355
            G I DA++VFD + + +V +  SM+ GY ++G   +A+ELF  MM    ++PN +TFL 
Sbjct: 344 SGNICDAKKVFDRLVKVDVVSCNSMLIGYAQHGLGKEAVELFEEMMLWVEIEPNDITFLS 403

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            L+AC HAGL+D+G   FE M++ Y ++PK+ HY  +VDL GRAG L+QA  F+ EMP +
Sbjct: 404 VLTACSHAGLLDEGLYYFELMKK-YGLEPKLSHYTTVVDLFGRAGLLDQAKSFIEEMPIE 462

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
           PN+ +W ALL + ++H + EM   AA ++ +L+    PGA+  LSN  A+AG+W  V ++
Sbjct: 463 PNATIWGALLGASKMHKNTEMGAYAAQKVLELDPF-YPGAHTLLSNIYASAGQWKDVAKV 521

Query: 476 REKMKLRGVLKDTGCSWVGTESGL 499
           R++MK  G+ K+  CSWV  E+ +
Sbjct: 522 RKEMKDSGLKKEPACSWVEIENSV 545


>gi|356541437|ref|XP_003539183.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500,
           mitochondrial-like [Glycine max]
          Length = 547

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 167/499 (33%), Positives = 268/499 (53%), Gaps = 43/499 (8%)

Query: 29  FPPKLQNYDSL-------SNPLTATSLPSALQHYINSD--------------------TP 61
           FP  +   +SL        +P++A +L  +L+   +SD                    + 
Sbjct: 44  FPSDISQTNSLIASYVRRGDPVSALTLFHSLRRRAHSDVVADAYTFTSILRASSLLRVSG 103

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
            +G ++HA + KTG    T     LL ++ KCG+L  A ++FDE+  R + A+N +++ +
Sbjct: 104 QFGTQVHAQMLKTGADSGTVAKTALLDMYSKCGSLDEATKVFDEMRHRDVVAWNALLSCF 163

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           L+  +  E+  ++R++         +T    LK+   C S   L   LGR VH  ++ C 
Sbjct: 164 LRCDRPVEAFGVLREMGRENVELSEFTLCSALKS---CASLKAL--ELGRQVHGLVV-CM 217

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMM--LEKNVICSTSMISGFMSQGFVEDAEEI 239
            +   VL TALVD Y   G    A  VF  +    K+ +   SM+SG +     ++A  +
Sbjct: 218 GRDLVVLSTALVDFYTSVGCVDDALKVFYSLKGCWKDDMMYNSMVSGCVRSRRYDEAFRV 277

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
                   I + +A++ G S +++      ++HC  ++  F  D +L +AL+DMYAKCG+
Sbjct: 278 MGFVRPNAIALTSALV-GCSENLDLW-AGKQIHCVAVRWGFTFDTQLCNALLDMYAKCGR 335

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC--VQPNYVTFLGAL 357
           I  A  VFD + +K+V +WT MID YG+NG   +A+E+F  M+E    V PN VTFL  L
Sbjct: 336 ISQALSVFDGICEKDVISWTCMIDAYGRNGQGREAVEVFREMREVGSKVLPNSVTFLSVL 395

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQ---ALKFVLEMPE 414
           SACGH+GLV++G+  F+ +   Y ++P  EHYAC +D+LGRAG++E+   A   ++    
Sbjct: 396 SACGHSGLVEEGKNCFKLLREKYGLQPDPEHYACYIDILGRAGNIEEVWSAYHNMVVQGT 455

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
           +P + VW ALL++C L+ DVE   +AA  + +L  N +    V +SN  AA  +WD V E
Sbjct: 456 RPTAGVWVALLNACSLNQDVERGELAAKHLLQLEPN-KASNIVLVSNFYAAIDRWDCVEE 514

Query: 475 LREKMKLRGVLKDTGCSWV 493
           LR  M+ +G+ K+ G SW+
Sbjct: 515 LRSIMRTKGLAKEAGNSWI 533


>gi|218186152|gb|EEC68579.1| hypothetical protein OsI_36919 [Oryza sativa Indica Group]
          Length = 586

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 148/463 (31%), Positives = 241/463 (52%), Gaps = 42/463 (9%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +HA I K G+  +      L+  + K   L  A  +FDE P+R +  Y+ ++     +  
Sbjct: 1   MHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAISHSAS 60

Query: 127 VEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
            E +L ++R ++S+    PD +  S +       RS     R LGR +HA  +      D
Sbjct: 61  PELALPILRCMLSADALHPDHFVISSVASVFARLRS-----RRLGRQLHAHFVASPYNGD 115

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
           DV+ ++LVD Y K G     R VFD M  KN +  T+++SG+ S G  E+A ++FR    
Sbjct: 116 DVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPG 175

Query: 246 KDIVVYNAMIEGY----------SISIETARKALEV------------------------ 271
           +++  + A+I G            + +E  R  + +                        
Sbjct: 176 RNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGASADLAAFVLGRQ 235

Query: 272 -HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
            H   ++  F  ++ +G+AL+DMY+KC  I  AR VF+ +  ++V +WT+M+ G  ++G 
Sbjct: 236 LHGSAMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGR 295

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
             +AL L+  M     +PN VTF+G + AC HAGLV KGR++FESM+ +Y + P+++HY 
Sbjct: 296 AEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYT 355

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
           C +DLL R+G L +A + +  MP +P+   W ALLS+C  + D EM    ++++ +L   
Sbjct: 356 CYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPK 415

Query: 451 DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           D    Y+ LSN  A  GKWDSV ++R+ M    + K+ G SW+
Sbjct: 416 D-SSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWI 457



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/334 (22%), Positives = 136/334 (40%), Gaps = 77/334 (23%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HAH   +    +  +   L+ ++ KCG+     ++FD +  +    +  +++GY  
Sbjct: 100 GRQLHAHFVASPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYAS 159

Query: 124 NGQVEESLSLVRK---------------LVSSGE-----------RPDG------YTFSM 151
           NG+ EE+L L R                LV++GE           R DG      +  S+
Sbjct: 160 NGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSI 219

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           ++ AS    + V     LGR +H   ++    ++ ++  AL+D Y K      AR VF+ 
Sbjct: 220 VIGASADLAAFV-----LGRQLHGSAMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEG 274

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV 271
           +  ++VI  T+M+ G    G  E+A           + +Y+ M+   +   E     L  
Sbjct: 275 ITFRDVISWTTMVVGEAQHGRAEEA-----------LALYDRMVLAGAKPNEVTFVGLIY 323

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT-----WTSMIDGYG 326
            C                     +  G +   R++F+ M+ +   T     +T  +D   
Sbjct: 324 AC---------------------SHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLS 362

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           ++G+  +A EL   M     +P+  T+   LSAC
Sbjct: 363 RSGHLLEAEELMTTMP---YEPDEATWGALLSAC 393


>gi|147780302|emb|CAN70248.1| hypothetical protein VITISV_032008 [Vitis vinifera]
          Length = 679

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 138/397 (34%), Positives = 239/397 (60%), Gaps = 11/397 (2%)

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           ++F+ +P+R + ++N +I+G  +NG  E++L +VR++ ++  RPD +T S +L       
Sbjct: 151 KVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSFTLSSVLPIFA--- 207

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
             V L +  G+ +H   ++    AD  + ++L+D Y K  +   +  VF M+ + + I  
Sbjct: 208 EYVNLLK--GKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYMLPQHDGISW 265

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLI 276
            S+I+G +  G  ++  + F++ +   I    V +++++   +  + T     ++H  +I
Sbjct: 266 NSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACA-HLTTLHLGKQLHGYII 324

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           ++ F  +V + SALVDMYAKCG I  AR +FD M+  ++ +WT+MI GY  +G+   A+ 
Sbjct: 325 RSRFDGNVFIASALVDMYAKCGNIRTARWIFDKMELYDMVSWTAMIMGYALHGHAYDAIS 384

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           LF  M+   V+PNYV F+  L+AC HAGLVD+  + F SM +DY + P +EHYA + DLL
Sbjct: 385 LFKRMEVEGVKPNYVAFMAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLL 444

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456
           GR G LE+A +F+ +M  +P   VW+ LL++CR+H ++E+A   + ++F ++  +  GAY
Sbjct: 445 GRVGRLEEAYEFISDMHIEPTGSVWSTLLAACRVHKNIELAEKVSKKLFTVDPQN-IGAY 503

Query: 457 VALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           V LSN  +AAG+W    +LR  M+ +G+ K   CSW+
Sbjct: 504 VLLSNIYSAAGRWKDARKLRIAMRDKGMKKKPACSWI 540



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/302 (25%), Positives = 146/302 (48%), Gaps = 36/302 (11%)

Query: 163 VPLPRNLGRMVHAQILKCDV--------------KADDVLYTA-----------LVDSYV 197
           +P PR +G+  ++  L C++              +  ++LY               D Y 
Sbjct: 78  IPEPREIGKCSNSHDLPCELDERVAGIDQNGDLNQMSNILYQVNTYKKVFDEGKTSDVYS 137

Query: 198 KGGKTSY----ARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----V 249
           K  K SY     R VF+MM +++++   ++ISG    G  EDA  + R+    D+     
Sbjct: 138 KKEKESYYLGSLRKVFEMMPKRDIVSWNTVISGNAQNGMHEDALMMVREMGNADLRPDSF 197

Query: 250 VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309
             ++++  ++  +    K  E+H   I+N +  DV +GS+L+DMYAKC ++DD+ RVF  
Sbjct: 198 TLSSVLPIFAEYVNLL-KGKEIHGYAIRNGYDADVFIGSSLIDMYAKCTRVDDSCRVFYM 256

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKG 369
           + Q +  +W S+I G  +NG  ++ L+ F  M    ++PN+V+F   + AC H   +  G
Sbjct: 257 LPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSSIMPACAHLTTLHLG 316

Query: 370 REIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCR 429
           +++   + R       +   + +VD+  + G++  A +++ +  E  +   W A++    
Sbjct: 317 KQLHGYIIRS-RFDGNVFIASALVDMYAKCGNIRTA-RWIFDKMELYDMVSWTAMIMGYA 374

Query: 430 LH 431
           LH
Sbjct: 375 LH 376



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 171/391 (43%), Gaps = 54/391 (13%)

Query: 32  KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHL 91
           ++ N D   +  T +S+      Y+N      G +IH +  + G   +  I   L+ ++ 
Sbjct: 186 EMGNADLRPDSFTLSSVLPIFAEYVN---LLKGKEIHGYAIRNGYDADVFIGSSLIDMYA 242

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           KC  +  + ++F  LPQ    ++N +IAG ++NG  +E L   ++++ +  +P+  +FS 
Sbjct: 243 KCTRVDDSCRVFYMLPQHDGISWNSIIAGCVQNGMFDEGLKFFQQMLIAKIKPNHVSFSS 302

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           I+ A   C     L  +LG+ +H  I++     +  + +ALVD Y K G    AR +FD 
Sbjct: 303 IMPA---CAHLTTL--HLGKQLHGYIIRSRFDGNVFIASALVDMYAKCGNIRTARWIFDK 357

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV 271
           M   +++  T+MI G+   G   DA  +F++                          +EV
Sbjct: 358 MELYDMVSWTAMIMGYALHGHAYDAISLFKR--------------------------MEV 391

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-----NVFTWTSMIDGYG 326
                  V F       A++   +  G +D+A + F+ M Q       +  + ++ D  G
Sbjct: 392 EGVKPNYVAF------MAVLTACSHAGLVDEAWKYFNSMTQDYRIIPGLEHYAAVADLLG 445

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD-YSMKPK 385
           + G   +A E    M    ++P    +   L+AC     V K  E+ E + +  +++ P+
Sbjct: 446 RVGRLEEAYEFISDMH---IEPTGSVWSTLLAAC----RVHKNIELAEKVSKKLFTVDPQ 498

Query: 386 -MEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            +  Y  + ++   AG  + A K  + M +K
Sbjct: 499 NIGAYVLLSNIYSAAGRWKDARKLRIAMRDK 529


>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
 gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 147/437 (33%), Positives = 245/437 (56%), Gaps = 16/437 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH    K G + +  ++  L+ ++ KC  L+ A ++F ++P+++L A+N MI GY+ 
Sbjct: 227 GKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVA 286

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL--GRMVHAQILKCD 181
            G  +  + ++ +++  G RP   T + IL A  C RS     RNL  G+ +H  +++  
Sbjct: 287 KGDSKSCVEILNRMIIEGTRPSQTTLTSILMA--CSRS-----RNLLHGKFIHGYVIRSV 339

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           V AD  +  +L+D Y K G+ + A  VF    +        MIS ++S G    A E++ 
Sbjct: 340 VNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYD 399

Query: 242 KTV----EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           + V    + D+V + +++   S  +    K  ++H  + ++    D  L SAL+DMY+KC
Sbjct: 400 QMVSVGVKPDVVTFTSVLPACS-QLAALEKGKQIHLSISESRLETDELLLSALLDMYSKC 458

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G   +A R+F+ + +K+V +WT MI  YG +G P +AL  F  MQ+  ++P+ VT L  L
Sbjct: 459 GNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVL 518

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP- 416
           SACGHAGL+D+G + F  M   Y ++P +EHY+CM+D+LGRAG L +A + + + PE   
Sbjct: 519 SACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDILGRAGRLLEAYEIIQQTPETSD 578

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
           N+++ + L S+C LH +  + +  A  + + N  D    Y+ L N  A+   WD+   +R
Sbjct: 579 NAELLSTLFSACCLHLEHSLGDRIARLLVE-NYPDDASTYMVLFNLYASGESWDAARRVR 637

Query: 477 EKMKLRGVLKDTGCSWV 493
            KMK  G+ K  GCSW+
Sbjct: 638 LKMKEMGLRKKPGCSWI 654



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/497 (24%), Positives = 237/497 (47%), Gaps = 24/497 (4%)

Query: 7   IRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTAT----SLPSALQHYINSDTPF 62
           IRS V+    N   +    N  F   L+ +  L N         + P+ ++ Y      F
Sbjct: 67  IRSDVY--IWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREF 124

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
            G  IH  + K+G   +  ++  L+ ++ K    + + Q+FDE+P+R ++++N +I+ + 
Sbjct: 125 LGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFY 184

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           ++G+ E++L L  ++ SSG  P+  + ++ + A   C   + L R  G+ +H + +K   
Sbjct: 185 QSGEAEKALELFGRMESSGFEPNSVSLTVAISA---CSRLLWLER--GKEIHRKCVKKGF 239

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           + D+ + +ALVD Y K      AR VF  M  K+++   SMI G++++G  +   EI  +
Sbjct: 240 ELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNR 299

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALE---VHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            + +        +    ++   +R  L    +H  +I++V   D+ +  +L+D+Y KCG+
Sbjct: 300 MIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGE 359

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
            + A  VF   Q+    +W  MI  Y   GN  +A+E++  M    V+P+ VTF   L A
Sbjct: 360 ANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPA 419

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C     ++KG++I  S+  +  ++      + ++D+  + G+ ++A +    +P+K   D
Sbjct: 420 CSQLAALEKGKQIHLSIS-ESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKK---D 475

Query: 420 V--WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS----VT 473
           V  W  ++S+   H     A    +E+ K          +A+ +    AG  D      +
Sbjct: 476 VVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFS 535

Query: 474 ELREKMKLRGVLKDTGC 490
           ++R K  +  +++   C
Sbjct: 536 QMRSKYGIEPIIEHYSC 552



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 182/393 (46%), Gaps = 17/393 (4%)

Query: 43  LTATSLPSALQHYINSDTPFYGLK-IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQ 101
           + ++ L S L+   NS      +K +H  I   G++ +  +   L+ ++  C     A  
Sbjct: 1   MESSKLLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARH 60

Query: 102 MFDELPQRT-LSAYNYMIAGYLKNGQVEESLSLVRKLVS-SGERPDGYTFSMILKASTCC 159
           +F+    R+ +  +N +++GY KN    ++L + ++L++ S   PD +TF  ++KA    
Sbjct: 61  VFENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYG-- 118

Query: 160 RSNVPLPRN-LGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI 218
                L R  LGRM+H  ++K     D V+ ++LV  Y K      +  VFD M E++V 
Sbjct: 119 ----ALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVA 174

Query: 219 CSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQ 274
              ++IS F   G  E A E+F +      E + V     I   S  +   R   E+H +
Sbjct: 175 SWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGK-EIHRK 233

Query: 275 LIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQA 334
            +K  F  D  + SALVDMY KC  ++ AR VF  M +K++  W SMI GY   G+    
Sbjct: 234 CVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSC 293

Query: 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394
           +E+   M     +P+  T    L AC  +  +  G+ I   + R   +   +     ++D
Sbjct: 294 VEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSV-VNADIYVNCSLID 352

Query: 395 LLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
           L  + G    A + V    +K  ++ W  ++SS
Sbjct: 353 LYFKCGEANLA-ETVFSKTQKDVAESWNVMISS 384


>gi|414585731|tpg|DAA36302.1| TPA: hypothetical protein ZEAMMB73_369042 [Zea mays]
          Length = 865

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 152/486 (31%), Positives = 264/486 (54%), Gaps = 41/486 (8%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L +T+  S+L       +  +G ++HA + +     +  ++  L+ L+ K G  K A  +
Sbjct: 268 LDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHIDPYVASALVELYAKSGCFKEAKGV 327

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           F+ L  R   A+  +I+G+L+ G   ES+ L  ++ +     D +  + ++  S CC S 
Sbjct: 328 FNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMRAELMTLDQFALATLI--SGCC-SR 384

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
           + L   LGR +H+  LK       V+  +L+  Y K      A  +F  M EK+++  TS
Sbjct: 385 MDLC--LGRQLHSLCLKSGQIQAVVVSNSLISMYAKCDNLQSAEAIFRFMNEKDIVSWTS 442

Query: 223 MISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY---------------SISIETARK 267
           MI+ +   G V  A E F    EK+++ +NAM+  Y                +S E  R 
Sbjct: 443 MITAYSQVGNVAKAREFFDGMSEKNVITWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRP 502

Query: 268 ALEVHCQLIK------------NVFFEDVKLG--------SALVDMYAKCGKIDDARRVF 307
               +  L K             +    VK+G        +A++ MY+KCG+I +AR+VF
Sbjct: 503 DWVTYVTLFKGCADLGANKLGDQIIGRTVKVGLIIDTSVANAVITMYSKCGRILEARKVF 562

Query: 308 DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367
           D +  K++ +W +MI GY ++G   QA+E+F  + +   +P+Y++++  LS C H+GLV 
Sbjct: 563 DFLNVKDIVSWNAMITGYSQHGMGKQAIEIFDDILKRGAKPDYISYVAVLSGCSHSGLVQ 622

Query: 368 KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
           +G+  F+ M+R +++ P +EH++CMVDLLGRAG L +A   + +MP KP ++VW ALLS+
Sbjct: 623 EGKFYFDMMKRAHNISPGLEHFSCMVDLLGRAGHLTEAKDLIDDMPMKPTAEVWGALLSA 682

Query: 428 CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487
           C++H + E+A +AA  +F+L++ D  G+Y+ ++   A AGK D   ++R+ M+ +G+ K+
Sbjct: 683 CKIHGNNELAELAAKHVFELDSPD-SGSYMLMAKIYADAGKSDDSAQIRKLMRDKGIKKN 741

Query: 488 TGCSWV 493
            G SW+
Sbjct: 742 PGYSWM 747



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 186/401 (46%), Gaps = 48/401 (11%)

Query: 27  QTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKL 86
           +TF    ++ DS  N  T   L  A++           L++ A + K   + ++ ++  L
Sbjct: 123 ETFLSMHRSGDSWPNAFT---LACAMKSCGALGWHSLALQLLAMVQKFDSQDDSEVAAAL 179

Query: 87  LILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK----------------------- 123
           + + ++CGA+  A ++F  + + T+   N M+AGY+K                       
Sbjct: 180 VDMFVRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWN 239

Query: 124 --------NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA 175
                   +G+V E+L +V  + S G R D  T++  L A  C R +       G+ +HA
Sbjct: 240 MMVSALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTA--CARLS---SLRWGKQLHA 294

Query: 176 QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
           Q+++     D  + +ALV+ Y K G    A+ VF+ + ++N +  T +ISGF+  G   +
Sbjct: 295 QVIRNLPHIDPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTE 354

Query: 236 AEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVFFEDVKLGSALV 291
           + E+F + +  +++  +       IS   +R  L    ++H   +K+   + V + ++L+
Sbjct: 355 SVELFNQ-MRAELMTLDQFALATLISGCCSRMDLCLGRQLHSLCLKSGQIQAVVVSNSLI 413

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
            MYAKC  +  A  +F  M +K++ +WTSMI  Y + GN  +A E F  M E     N +
Sbjct: 414 SMYAKCDNLQSAEAIFRFMNEKDIVSWTSMITAYSQVGNVAKAREFFDGMSE----KNVI 469

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACM 392
           T+   L A    G  + G  +++ M  +  ++P    Y  +
Sbjct: 470 TWNAMLGAYIQHGAEEDGLRMYKVMLSEEYVRPDWVTYVTL 510



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 79/318 (24%), Positives = 146/318 (45%), Gaps = 40/318 (12%)

Query: 78  PNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL 137
           PN      +L  + K G L  A ++F  +P R ++++N +++GY ++ Q   SL     +
Sbjct: 69  PNVITHNVMLNGYAKLGRLSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSM 128

Query: 138 VSSGER-PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196
             SG+  P+ +T +  +K+      +     +L   + A + K D + D  +  ALVD +
Sbjct: 129 HRSGDSWPNAFTLACAMKSCGALGWH-----SLALQLLAMVQKFDSQDDSEVAAALVDMF 183

Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE 256
           V+ G    A  +F  + E  + C  SM++G++    V+ A E+F    E+D+V +N M+ 
Sbjct: 184 VRCGAVDLASRLFVRIKEPTMFCRNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVS 243

Query: 257 GYSIS----------------------------------IETARKALEVHCQLIKNVFFE 282
             S S                                  + + R   ++H Q+I+N+   
Sbjct: 244 ALSQSGRVREALDMVVDMQSKGVRLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNLPHI 303

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           D  + SALV++YAK G   +A+ VF+ +  +N   WT +I G+ + G   +++ELF  M+
Sbjct: 304 DPYVASALVELYAKSGCFKEAKGVFNSLHDRNNVAWTVLISGFLQYGCFTESVELFNQMR 363

Query: 343 ECCVQPNYVTFLGALSAC 360
              +  +       +S C
Sbjct: 364 AELMTLDQFALATLISGC 381



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 148/349 (42%), Gaps = 79/349 (22%)

Query: 174 HAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM-MLEKNVICSTSMISGFMSQGF 232
           H +++   + +   L   L+ +Y+  G  S AR +  M +   NVI    M++G+   G 
Sbjct: 27  HGRLVAVGLASAVFLQNTLLHAYLSCGALSDARRLLLMDIAHPNVITHNVMLNGYAKLGR 86

Query: 233 VEDAEEIFRKTVEKDIVVYNAMIEGYS------ISIET-------------------ARK 267
           + DA E+F +   +D+  +N ++ GY       +S+ET                   A K
Sbjct: 87  LSDAVELFGRMPARDVASWNTLMSGYFQSRQYLVSLETFLSMHRSGDSWPNAFTLACAMK 146

Query: 268 ----------ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARR------------ 305
                     AL++   + K    +D ++ +ALVDM+ +CG +D A R            
Sbjct: 147 SCGALGWHSLALQLLAMVQKFDSQDDSEVAAALVDMFVRCGAVDLASRLFVRIKEPTMFC 206

Query: 306 -------------------VFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
                              +FD M +++V +W  M+    ++G   +AL++   MQ   V
Sbjct: 207 RNSMLAGYVKTYGVDHALELFDSMPERDVVSWNMMVSALSQSGRVREALDMVVDMQSKGV 266

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY--ACMVDLLGRAGSLEQ 404
           + +  T+  +L+AC     +  G+++   + R+    P ++ Y  + +V+L  ++G  ++
Sbjct: 267 RLDSTTYTSSLTACARLSSLRWGKQLHAQVIRNL---PHIDPYVASALVELYAKSGCFKE 323

Query: 405 ALKFVLEMPEKPNSDVWAALLS-----SCRLHDDVEMANIAANEIFKLN 448
           A K V       N+  W  L+S      C   + VE+ N    E+  L+
Sbjct: 324 A-KGVFNSLHDRNNVAWTVLISGFLQYGC-FTESVELFNQMRAELMTLD 370


>gi|357156786|ref|XP_003577575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 694

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 151/470 (32%), Positives = 247/470 (52%), Gaps = 65/470 (13%)

Query: 78  PNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL 137
           PN    + LL  + + G +  A ++FD +P R ++A+N M++GYL+   +EE+  L    
Sbjct: 227 PNVVSWVTLLNGYCRAGRIGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEAYKLFT-- 284

Query: 138 VSSGERPDGYTFSMILKASTCCRSN-----------VPLPRNLGR--MVHAQI---LKCD 181
               E PD  + S     S   R             +P      +  ++H  +   +  D
Sbjct: 285 ----EMPDKNSISWTTMISALVRGGKLQEAKDLLDKMPFDSFAAKTALMHGYLQSKMIDD 340

Query: 182 VK--------ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFV 233
            +         D V +  ++  YV  G    A ++F  M  K+++   +MI+G+   G +
Sbjct: 341 ARLIFDGLEVRDAVCWNTMISGYVHCGMLDEAMVLFQQMPNKDMVSWNTMIAGYAHDGQM 400

Query: 234 EDAEEIFRKTVEKDIVVYNAMIEGY---SISIET----------ARKA------------ 268
             A  IFRK  +++ V +N++I G+    + +E           A++A            
Sbjct: 401 RKAVGIFRKMNQRNTVSWNSVISGFVQNGLCVEALQHFVLMRRDAKRADWSTYACCLSAC 460

Query: 269 ---------LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWT 319
                     + H  L ++ +  D   G+AL+  YAKCG+I +AR+VFD M   ++ +W 
Sbjct: 461 ADLAALHVGRQFHSLLARSGYIGDSFAGNALISAYAKCGRILEARQVFDEMPAPDIVSWN 520

Query: 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD 379
           ++IDGY  NG+  +A+ +F  M++  V+P+ VTF+G LSAC HAGL+D+G + F SM +D
Sbjct: 521 ALIDGYASNGHGTEAISVFREMEDNDVRPDEVTFVGVLSACSHAGLIDEGFDFFNSMTKD 580

Query: 380 YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANI 439
           Y+++P  EHYACMVDLLGR+G L +A + +  M  +PN+ VW A+L +CR+H + E+A +
Sbjct: 581 YALRPVAEHYACMVDLLGRSGRLSEAFEIIQGMQVQPNAGVWGAMLGACRVHKNHELAQL 640

Query: 440 AANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTG 489
           AA ++++L  + +   YV LSN  A AGKWD    +R  +K RGV K  G
Sbjct: 641 AAEKLYELEPH-KTSNYVLLSNITAEAGKWDEAQNMRVFIKERGVHKTPG 689



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 91/370 (24%), Positives = 173/370 (46%), Gaps = 54/370 (14%)

Query: 90  HLKCGALKYAGQMFDELPQRTLSA-YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYT 148
           + + G L  A    D +P    +A YN MI+GY K+G+ +++++L+R++ +    PD  +
Sbjct: 114 YARAGELGLARDALDRMPGDKCTACYNAMISGYAKHGRFDDAVALLREMPA----PDIIS 169

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVL-YTALVDSYVKGGKTSYARI 207
           ++ +L         V L RN G MV A     ++ A D++ +  +++ YV+ G    A  
Sbjct: 170 WNSVL---------VGLTRN-GEMVRAVKFFDEMPARDMVSWNLMLEGYVRAGDVDSAAG 219

Query: 208 VFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY--------- 258
           +F  +   NV+   ++++G+   G + +A E+F +  ++++  +N M+ GY         
Sbjct: 220 LFAGVPSPNVVSWVTLLNGYCRAGRIGEARELFDRIPDRNVAAWNVMLSGYLRLSHMEEA 279

Query: 259 -----------SISIETARKA------LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
                      SIS  T   A      L+    L+  + F+     +AL+  Y +   ID
Sbjct: 280 YKLFTEMPDKNSISWTTMISALVRGGKLQEAKDLLDKMPFDSFAAKTALMHGYLQSKMID 339

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           DAR +FD ++ ++   W +MI GY   G  ++A+ LF  M       + V++   ++   
Sbjct: 340 DARLIFDGLEVRDAVCWNTMISGYVHCGMLDEAMVLFQQMP----NKDMVSWNTMIAGYA 395

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALK-FVLEMPEKPNSD- 419
           H G + K   IF  M +  ++      +  ++    + G   +AL+ FVL   +   +D 
Sbjct: 396 HDGQMRKAVGIFRKMNQRNTVS-----WNSVISGFVQNGLCVEALQHFVLMRRDAKRADW 450

Query: 420 -VWAALLSSC 428
             +A  LS+C
Sbjct: 451 STYACCLSAC 460



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 84/340 (24%), Positives = 153/340 (45%), Gaps = 66/340 (19%)

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           + G L  A ++FD +P R   +YN M++   ++G++ ++    R+L     R +  +++ 
Sbjct: 23  RSGQLAAARRLFDSMPSRNTVSYNAMLSALARHGRIADA----RRLFDEIPRRNTVSWNA 78

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVL-YTALVDSYVKGGKTSYARIVFD 210
           ++ A +          + GR+  A+ L   + A D   +T +V  Y + G+   AR   D
Sbjct: 79  MIAACS----------DHGRVADARDLFDAMPARDGFSWTLMVSCYARAGELGLARDALD 128

Query: 211 MML-EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL 269
            M  +K   C  +MISG+   G  +DA  + R+    DI+ +N+++ G            
Sbjct: 129 RMPGDKCTACYNAMISGYAKHGRFDDAVALLREMPAPDIISWNSVLVG------------ 176

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
                L +N                   G++  A + FD M  +++ +W  M++GY + G
Sbjct: 177 -----LTRN-------------------GEMVRAVKFFDEMPARDMVSWNLMLEGYVRAG 212

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
           + + A  LF  +      PN V+++  L+    AG + + RE+F+ +       P     
Sbjct: 213 DVDSAAGLFAGVP----SPNVVSWVTLLNGYCRAGRIGEARELFDRI-------PDRNVA 261

Query: 390 ACMVDLLG--RAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
           A  V L G  R   +E+A K   EMP+K NS  W  ++S+
Sbjct: 262 AWNVMLSGYLRLSHMEEAYKLFTEMPDK-NSISWTTMISA 300



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 53/94 (56%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G + H+ + ++G   ++     L+  + KCG +  A Q+FDE+P   + ++N +I GY  
Sbjct: 469 GRQFHSLLARSGYIGDSFAGNALISAYAKCGRILEARQVFDEMPAPDIVSWNALIDGYAS 528

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           NG   E++S+ R++  +  RPD  TF  +L A +
Sbjct: 529 NGHGTEAISVFREMEDNDVRPDEVTFVGVLSACS 562


>gi|357133649|ref|XP_003568436.1| PREDICTED: pentatricopeptide repeat-containing protein At4g14050,
           mitochondrial-like [Brachypodium distachyon]
          Length = 610

 Score =  260 bits (664), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 148/464 (31%), Positives = 248/464 (53%), Gaps = 42/464 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           + HA + K G+  +      L+  + K   L     +FDE P+R L  Y+ ++A    + 
Sbjct: 24  RAHARLIKEGLAQHPPAPALLVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLAAVSHSE 83

Query: 126 QVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
             E  L L+R+++S+   RPD +  + I  A+   RS       LG+ +H   +     +
Sbjct: 84  SPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLC-----LGKQLHGHFVASPYSS 138

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
           DDV+ ++L+D Y K G    AR VFD ++ KN +  T++ISG++  G  ++A E+FR   
Sbjct: 139 DDVVKSSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRSMP 198

Query: 245 EKDIVVYNAMIEGY-------------------SISIETA---RKAL------------- 269
            + +  + A+I G+                    +SI+ A     A+             
Sbjct: 199 GRTLFAWTALISGFVRSGESVSAVKLFVDMRRDGVSIDDAFVLSSAIGGAADLAAHVLGR 258

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
           ++H   ++  F   + +G+A+VDMY+KC  I  AR VF+ +  +++ +WT+M+ G  ++G
Sbjct: 259 QLHSLTMRLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRDIISWTTMLVGEAQHG 318

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
              +A  L+  M    V+PN VTF+G + AC HAGLV KGR++F+SM+ +Y + P+++HY
Sbjct: 319 RAEEAFSLYDRMVLAGVKPNEVTFVGLIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHY 378

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
            C +DLL R+G L +A + +  MP  P+   WA+LLS+C+ +++ EM+   A+ + +L  
Sbjct: 379 TCYLDLLSRSGHLAEAEELITTMPYVPDEATWASLLSACKKYNNAEMSIRVADNLLELRP 438

Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
              P  YV LSN  A  GKWDSV  +R+ M    + K+ G SW+
Sbjct: 439 K-YPSTYVLLSNVYAVNGKWDSVDTVRKLMADMEIRKEPGYSWI 481



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/181 (30%), Positives = 94/181 (51%), Gaps = 7/181 (3%)

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
           PR+L R  HA+++K  +         LV +Y K       R++FD    +++   +S+++
Sbjct: 19  PRSL-RRAHARLIKEGLAQHPPAPALLVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLA 77

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETAR-KAL----EVHCQLIKNVF 280
                   E    + R+ +  D +  +  +   SI+  TAR ++L    ++H   + + +
Sbjct: 78  AVSHSESPELVLPLLRRMLSADALRPDHFVLA-SIASATARLRSLCLGKQLHGHFVASPY 136

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             D  + S+L+DMY KCG  DDAR+VFD +  KN   WT++I GY  NG  ++ALELF  
Sbjct: 137 SSDDVVKSSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYVLNGRSDEALELFRS 196

Query: 341 M 341
           M
Sbjct: 197 M 197



 Score = 68.2 bits (165), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 69/329 (20%), Positives = 128/329 (38%), Gaps = 67/329 (20%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H H   +    +  +   L+ ++ KCG    A ++FD +  +    +  +I+GY+ 
Sbjct: 124 GKQLHGHFVASPYSSDDVVKSSLIDMYCKCGVPDDARKVFDSIVAKNSVMWTALISGYVL 183

Query: 124 NGQVEESLSLVRKL---------------VSSGE-----------RPDGYTFSMILKAST 157
           NG+ +E+L L R +               V SGE           R DG +       S+
Sbjct: 184 NGRSDEALELFRSMPGRTLFAWTALISGFVRSGESVSAVKLFVDMRRDGVSIDDAFVLSS 243

Query: 158 CCRSNVPLPRN-LGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216
                  L  + LGR +H+  ++    +  ++  A+VD Y K      AR VF+ +  ++
Sbjct: 244 AIGGAADLAAHVLGRQLHSLTMRLGFSSSMIVGNAVVDMYSKCSDIHSAREVFEEITGRD 303

Query: 217 VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLI 276
           +I  T+M+ G    G  E+A  ++ + V   +        G                   
Sbjct: 304 IISWTTMLVGEAQHGRAEEAFSLYDRMVLAGVKPNEVTFVG------------------- 344

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-----NVFTWTSMIDGYGKNGNP 331
                        L+   +  G +   R++FD M+ +      +  +T  +D   ++G+ 
Sbjct: 345 -------------LIYACSHAGLVQKGRQLFDSMKGEYGINPRLQHYTCYLDLLSRSGHL 391

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSAC 360
            +A EL   M      P+  T+   LSAC
Sbjct: 392 AEAEELITTMPYV---PDEATWASLLSAC 417



 Score = 43.9 bits (102), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 50/226 (22%), Positives = 97/226 (42%), Gaps = 9/226 (3%)

Query: 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMID 323
           + R     H +LIK    +     + LV  YAK   + D R +FD   ++++  ++S++ 
Sbjct: 18  SPRSLRRAHARLIKEGLAQHPPAPALLVSAYAKSRLLPDTRLLFDETPRRDLHLYSSLLA 77

Query: 324 GYGKNGNPNQALELF-CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF-ESMERDYS 381
               + +P   L L   M+    ++P++       SA      +  G+++    +   YS
Sbjct: 78  AVSHSESPELVLPLLRRMLSADALRPDHFVLASIASATARLRSLCLGKQLHGHFVASPYS 137

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441
               ++  + ++D+  + G  + A K V +     NS +W AL+S   L+   +     A
Sbjct: 138 SDDVVK--SSLIDMYCKCGVPDDARK-VFDSIVAKNSVMWTALISGYVLNGRSD----EA 190

Query: 442 NEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487
            E+F+        A+ AL +    +G+  S  +L   M+  GV  D
Sbjct: 191 LELFRSMPGRTLFAWTALISGFVRSGESVSAVKLFVDMRRDGVSID 236


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 143/435 (32%), Positives = 237/435 (54%), Gaps = 12/435 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IHA+  +     N  +   LL ++ KC  L YA ++F+ + ++    ++ MI GY+ 
Sbjct: 229 GKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVL 288

Query: 124 NGQVEESLSLVRKLVS-SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +  + ++L+L   ++   G  P   T + +L+A   C     L R  G+ +H  ++K  +
Sbjct: 289 HDSISDALALYDDMLCIYGLNPTPATLATMLRA---CAQLTDLKR--GKKLHCHMIKSGM 343

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             D  +  +L+  Y K G    A    D M+ K+ +  +++ISG +  G+ E A  IFR+
Sbjct: 344 DLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQ 403

Query: 243 TVEKDIVVY----NAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
                I  Y     A++   S  +   +     H   +   F  D  + +A++DMY+KCG
Sbjct: 404 MQSSGIAPYLETMIALLPACS-HLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCG 462

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           KI  +R +FD MQ +++ +W +MI GYG +G   +AL LF  +Q   ++P+ VT +  LS
Sbjct: 463 KITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLS 522

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC H+GLV +G+  F SM +++++KP+M HY CMVDLL RAG+L++A  F+  MP  PN 
Sbjct: 523 ACSHSGLVTEGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNV 582

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            +W ALL++CR H ++EM    + +I +L   +  G +V +SN  ++ G+WD    +R  
Sbjct: 583 RIWGALLAACRTHKNIEMGEQVSKKI-QLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSI 641

Query: 479 MKLRGVLKDTGCSWV 493
            +  G  K  GCSWV
Sbjct: 642 QRHHGYKKSPGCSWV 656



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 129/522 (24%), Positives = 221/522 (42%), Gaps = 84/522 (16%)

Query: 8   RSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKI 67
           + S++   H     + P N TFP  L+   SL           ALQ          G  I
Sbjct: 89  QQSIYLYLHMLQLGVTPTNFTFPFLLKACSSLQ----------ALQ---------LGRLI 129

Query: 68  HAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ--RTLSAYNYMIAGYLKNG 125
           H H    G+  +  +S  LL ++ KCG L  A  +F+ +    R + A+N MIA +  + 
Sbjct: 130 HTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIVAWNAMIAAFSFHA 189

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              +++  V ++  +G  P+  T   IL   T  ++N     + G+ +HA  ++     +
Sbjct: 190 LHAQTIHSVAQMQQAGVTPNSSTLVSILP--TIGQANA---LHQGKAIHAYYIRNFFFDN 244

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
            VL TAL+D Y K     YAR +F+ + +KN +C ++MI G++    + DA  ++    +
Sbjct: 245 VVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDALALY----D 300

Query: 246 KDIVVYN--------AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
             + +Y         A +      +   ++  ++HC +IK+    D  +G++L+ MYAKC
Sbjct: 301 DMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKC 360

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G +D+A    D M  K+  +++++I G  +NG   +AL +F  MQ   + P   T +  L
Sbjct: 361 GIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALL 420

Query: 358 SACGHAGLVDKG-----------------------------------REIFESME-RDYS 381
            AC H   +  G                                   REIF+ M+ RD  
Sbjct: 421 PACSHLAALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRD-- 478

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSCRLHDDVEMAN 438
               +  +  M+   G  G   +AL    E+     KP+     A+LS+C     V    
Sbjct: 479 ----IISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGK 534

Query: 439 IAANEIFK-LNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
              + + +  N   R   Y+ + + LA AG  D      ++M
Sbjct: 535 YWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRM 576



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 87/347 (25%), Positives = 168/347 (48%), Gaps = 17/347 (4%)

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149
           H+    ++ A  +FD++P+ ++  +N MI  Y  +G  ++S+ L   ++  G  P  +TF
Sbjct: 51  HISRNEIQLARHVFDQIPKPSVVLWNMMIRTYAWSGPFQQSIYLYLHMLQLGVTPTNFTF 110

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVF 209
             +LKA   C S   L   LGR++H       +  D  + TAL+  Y K G    A+ +F
Sbjct: 111 PFLLKA---CSSLQAL--QLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLF 165

Query: 210 DMM--LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETA-- 265
           + +   +++++   +MI+ F              +  +  +   ++ +     +I  A  
Sbjct: 166 NSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANA 225

Query: 266 -RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
             +   +H   I+N FF++V L +AL+DMYAKC  +  AR++F+ + +KN   W++MI G
Sbjct: 226 LHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGG 285

Query: 325 YGKNGNPNQALELFCMMQECCV---QPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           Y  + + + AL L+  M   C+    P   T    L AC     + +G+++   M +   
Sbjct: 286 YVLHDSISDALALYDDM--LCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKS-G 342

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
           M         ++ +  + G ++ A+ F+ EM  K ++  ++A++S C
Sbjct: 343 MDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAK-DTVSYSAIISGC 388


>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
          Length = 825

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 147/431 (34%), Positives = 243/431 (56%), Gaps = 12/431 (2%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           IHAHI K+G      +   ++ +++K GA++ A   FD +    ++++N +++G+     
Sbjct: 385 IHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASWNTLLSGFYSGNN 444

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
            E  L + ++L+  G   + YT+  IL+   CC S + L    G  VHA +LK   + D 
Sbjct: 445 CEHGLRIFKELICEGVLANKYTYVGILR---CCTSLMDL--RFGCQVHACVLKSGFQGDY 499

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
            +   L+D YV+ G  + AR+VFD + E++V   T ++S +      E A E FR  + +
Sbjct: 500 DVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMSTYAKTDEGEKAIECFRSMLRE 559

Query: 247 DIVVYNAMIEGYSISI----ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
           +    +A +   S+S+          L++H   IK+ +   V + SALVDMY KCG + D
Sbjct: 560 NKRPNDATL-ATSLSVCSDLACLGSGLQLHSYTIKSGWNSSV-VSSALVDMYVKCGNLAD 617

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           A  +FD     ++  W ++I GY ++G+  +ALE F  M +    P+ +TF+G LSAC H
Sbjct: 618 AEMLFDESDTHDLVEWNTIICGYAQHGHGYKALEAFQEMIDEGNVPDEITFVGVLSACSH 677

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
           AGL+D+GR  F+ +   Y + P +EHYACMVD+L +AG L +A   + EMP  P++ +W 
Sbjct: 678 AGLLDEGRRYFKLLSSVYGITPTLEHYACMVDILAKAGKLAEAESLINEMPLTPDASLWK 737

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
            +L +CR+H ++E+A  AA ++F+   +D   + + LSN  A   +W+ V +LR  +  R
Sbjct: 738 TILGACRMHGNIEIAERAAEKLFESQPDD-ISSCILLSNIYADLKRWNDVAKLRSMLVDR 796

Query: 483 GVLKDTGCSWV 493
           GV K+ GCSW+
Sbjct: 797 GVKKEPGCSWI 807



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 179/386 (46%), Gaps = 16/386 (4%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           S  +ALQ    S     G  +HA + ++G +P+  +   LL ++ KCG L  A  +FD +
Sbjct: 62  SYAAALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGM 121

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P R + A+  M++     G    +L L  ++   G  P+G+  +  LKA T       + 
Sbjct: 122 PHRDVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACT-------VG 174

Query: 167 RNLG--RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSM 223
            +LG    VHAQ +K +   D  + ++LV++YV  G+   A R + D  +  +V    ++
Sbjct: 175 SDLGFTPQVHAQAVKLEGLFDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSDV-SWNAL 233

Query: 224 ISGFMSQGFVEDAEEIFRKTVEK--DIVVYN-AMIEGYSISIETARKALEVHCQLIKNVF 280
           ++ +   G       +F K VE   +I  Y    +    + +  A+    VH  +IK   
Sbjct: 234 LNEYARDGDYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGL 293

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             D  L + L++MY+KC   +DA  VF  + + +V   + MI  + ++    +A ++F  
Sbjct: 294 ETDRVLNNCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQ 353

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           M +  V+PN  TF+G        G V+  R I   + +    + K    A +V +  + G
Sbjct: 354 MSDMGVKPNQYTFVGLAIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDA-IVGMYVKTG 412

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLS 426
           +++ A+    ++ + P+   W  LLS
Sbjct: 413 AVQDAI-LAFDLMQGPDIASWNTLLS 437



 Score =  117 bits (293), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/371 (23%), Positives = 173/371 (46%), Gaps = 16/371 (4%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           + ++  +LP+ L+  +       G  +H  + K G++ +  ++  L+ ++ KC + + A 
Sbjct: 258 DEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLNNCLIEMYSKCLSAEDAY 317

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           ++F  + +  +   + MI+ + ++    E+  +  ++   G +P+ YTF  +  A    R
Sbjct: 318 EVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVGL--AIVASR 375

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           +      NL R +HA I+K        +  A+V  YVK G    A + FD+M   ++   
Sbjct: 376 TG---DVNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASW 432

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY---SISIETARKALEVHCQLIK 277
            +++SGF S    E    IF++ + + ++       G      S+   R   +VH  ++K
Sbjct: 433 NTLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCCTSLMDLRFGCQVHACVLK 492

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
           + F  D  +   L+DMY + G   +AR VFD +++++VF+WT ++  Y K     +A+E 
Sbjct: 493 SGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMSTYAKTDEGEKAIEC 552

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH---YACMVD 394
           F  M     +PN  T   +LS C     +  G ++       Y++K         + +VD
Sbjct: 553 FRSMLRENKRPNDATLATSLSVCSDLACLGSGLQL-----HSYTIKSGWNSSVVSSALVD 607

Query: 395 LLGRAGSLEQA 405
           +  + G+L  A
Sbjct: 608 MYVKCGNLADA 618



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 138/277 (49%), Gaps = 19/277 (6%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G ++HA + K+G + + ++S  LL ++++ G    A  +FD L +R + ++  +++ Y 
Sbjct: 482 FGCQVHACVLKSGFQGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMSTYA 541

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           K  + E+++   R ++   +RP+  T +  L   + C     L   L   +H+  +K   
Sbjct: 542 KTDEGEKAIECFRSMLRENKRPNDATLATSL---SVCSDLACLGSGL--QLHSYTIKSGW 596

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            +  V+ +ALVD YVK G  + A ++FD     +++   ++I G+   G    A E F++
Sbjct: 597 NS-SVVSSALVDMYVKCGNLADAEMLFDESDTHDLVEWNTIICGYAQHGHGYKALEAFQE 655

Query: 243 TVEK----DIVVYNAMIEGYSIS--IETARKALEVHCQLIKNVFFEDVKLG--SALVDMY 294
            +++    D + +  ++   S +  ++  R+    + +L+ +V+     L   + +VD+ 
Sbjct: 656 MIDEGNVPDEITFVGVLSACSHAGLLDEGRR----YFKLLSSVYGITPTLEHYACMVDIL 711

Query: 295 AKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGN 330
           AK GK+ +A  + + M    +   W +++     +GN
Sbjct: 712 AKAGKLAEAESLINEMPLTPDASLWKTILGACRMHGN 748


>gi|224104375|ref|XP_002313416.1| predicted protein [Populus trichocarpa]
 gi|222849824|gb|EEE87371.1| predicted protein [Populus trichocarpa]
          Length = 650

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 149/433 (34%), Positives = 243/433 (56%), Gaps = 7/433 (1%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++H H+ + G   +  ++ KL+ ++    ++  A ++FD+   RT+  YN +       G
Sbjct: 91  RVHRHLLENGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSLAG 150

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             EE L++ R++ S G   D +T++ +LKA       V L  N GR +HA IL+      
Sbjct: 151 HGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSL-LNKGREIHAHILRHGYDGY 209

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK-TV 244
             + T LVD Y K G  S A  VF+ M  KNV+  ++MI+ +   G   +A E+FR+  +
Sbjct: 210 VHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAKNGKAFEALELFRELML 269

Query: 245 EKDIVVYNAM----IEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           E   +  N++    +     ++    +   +H  +++      + + SALV MYA+CGK+
Sbjct: 270 ETQDLCPNSVTMVSVLQACAALAALEQGRLIHGYILRKGLDSILPVISALVTMYARCGKL 329

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           +  +RVFD M +++V +W S+I  YG +G   +A+ +F  M    V+P+ ++F+  L AC
Sbjct: 330 ELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEMTYNGVEPSPISFVSVLGAC 389

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            HAGLVD+G+ +F SM   + + P +EHYACMVDLLGRA  LE+A K +  M  +P   V
Sbjct: 390 SHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANRLEEAAKIIENMRIEPGPKV 449

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W +LL SCR+H +VE+A  A+  +F L   +  G YV L++  A AG WD V  +++ ++
Sbjct: 450 WGSLLGSCRIHCNVELAERASIRLFDLEPTN-AGNYVLLADIYAEAGMWDGVKRVKKLLE 508

Query: 481 LRGVLKDTGCSWV 493
            RG+ K  G SW+
Sbjct: 509 ARGLQKVPGRSWI 521



 Score = 84.7 bits (208), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 62/264 (23%), Positives = 130/264 (49%), Gaps = 8/264 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IHAHI + G     +I   L+ ++ K G +  A  +F+++P + + +++ MIA Y K
Sbjct: 194 GREIHAHILRHGYDGYVHIMTTLVDMYAKFGCVSNASCVFNQMPVKNVVSWSAMIACYAK 253

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG+  E+L L R+L+   +     + +M+   S             GR++H  IL+  + 
Sbjct: 254 NGKAFEALELFRELMLETQDLCPNSVTMV---SVLQACAALAALEQGRLIHGYILRKGLD 310

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +   + +ALV  Y + GK    + VFD M +++V+   S+IS +   GF + A  IF + 
Sbjct: 311 SILPVISALVTMYARCGKLELGQRVFDQMDKRDVVSWNSLISSYGVHGFGKKAIGIFEEM 370

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               VE   + + +++   S +       +  +   + +     V+  + +VD+  +  +
Sbjct: 371 TYNGVEPSPISFVSVLGACSHAGLVDEGKMLFNSMHVAHGICPSVEHYACMVDLLGRANR 430

Query: 300 IDDARRVFDHMQ-QKNVFTWTSMI 322
           +++A ++ ++M+ +     W S++
Sbjct: 431 LEEAAKIIENMRIEPGPKVWGSLL 454



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 79/163 (48%), Gaps = 6/163 (3%)

Query: 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
           A  VH  L++N F +D  L + L++MY+    ID+AR+VFD  + + ++ + ++      
Sbjct: 89  AQRVHRHLLENGFDQDPFLATKLINMYSFFDSIDNARKVFDKTRNRTIYVYNALFRALSL 148

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSAC----GHAGLVDKGREIFESMERDYSMK 383
            G+  + L ++  M    +  +  T+   L AC        L++KGREI   + R +   
Sbjct: 149 AGHGEEVLNMYRRMNSIGIPSDRFTYTYVLKACVASECFVSLLNKGREIHAHILR-HGYD 207

Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
             +     +VD+  + G +  A     +MP K N   W+A+++
Sbjct: 208 GYVHIMTTLVDMYAKFGCVSNASCVFNQMPVK-NVVSWSAMIA 249


>gi|108707831|gb|ABF95626.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586055|gb|EAZ26719.1| hypothetical protein OsJ_10627 [Oryza sativa Japonica Group]
          Length = 798

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 160/508 (31%), Positives = 260/508 (51%), Gaps = 64/508 (12%)

Query: 26  NQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIK 85
            QT P       S+  P +  S  S L+ Y+      +GL   A      +    ++S  
Sbjct: 93  RQTLPDAAAALASIPFPPSVVSFTSLLRGYVR-----HGLLADAIRLFQQMPERNHVSYT 147

Query: 86  LLILHL-KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV-----RKLVS 139
           +L+  L   G +  A ++FDE+P R + A+  M++GY + G++ E+ +L      R +VS
Sbjct: 148 VLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVS 207

Query: 140 SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKG 199
                 GY  +            V L R L  ++  +        ++V +TA++  Y++ 
Sbjct: 208 WTAMISGYAQN----------GEVNLARKLFEVMPER--------NEVSWTAMLVGYIQA 249

Query: 200 GKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS 259
           G    A  +F+ M E  V    +M+ GF  +G V+ A+ +F K  E+D   ++AMI+ Y 
Sbjct: 250 GHVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYE 309

Query: 260 ---------------------------ISIETARKAL-------EVHCQLIKNVFFEDVK 285
                                      ISI T   AL       EVH  +++  F  DV 
Sbjct: 310 QNEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVF 369

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
             SAL+ MY KCG +D A+RVF   + K++  W SMI GY ++G   QAL +F  M+   
Sbjct: 370 AVSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAG 429

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
           + P+ +T++GAL+AC + G V +GREIF SM  + S++P  EHY+CMVDLLGR+G +E+A
Sbjct: 430 MSPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEA 489

Query: 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465
              +  MP +P++ +W AL+ +CR+H + E+A  AA ++ +L   +  G YV LS+   +
Sbjct: 490 FDLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGN-AGPYVLLSHIYTS 548

Query: 466 AGKWDSVTELREKMKLRGVLKDTGCSWV 493
            G+W+  +++R+ +  R + K  GCSW+
Sbjct: 549 VGRWEDASKMRKFISSRNLNKSPGCSWI 576



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 149/296 (50%), Gaps = 26/296 (8%)

Query: 88  ILHL-KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDG 146
           I HL + G ++ A   F+ +P RT ++YN ++AGY +N   + +L L R++ S     D 
Sbjct: 24  IAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSR----DL 79

Query: 147 YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR 206
            +++ ++   +  R  +P          A +         V +T+L+  YV+ G  + A 
Sbjct: 80  ASYNALISGLSLRRQTLP-------DAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAI 132

Query: 207 IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS--IET 264
            +F  M E+N +  T ++ G +  G V +A  +F +  ++D+V + AM+ GY  +  I  
Sbjct: 133 RLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITE 192

Query: 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
           AR        L   +   +V   +A++  YA+ G+++ AR++F+ M ++N  +WT+M+ G
Sbjct: 193 ARA-------LFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVG 245

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM-ERD 379
           Y + G+   A ELF  M E  V       +G     G  G+VD  + +FE M ERD
Sbjct: 246 YIQAGHVEDAAELFNAMPEHPVAACNAMMVG----FGQRGMVDAAKTVFEKMCERD 297



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 109/256 (42%), Gaps = 41/256 (16%)

Query: 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV 250
           A +    + G    AR  F+ M  +      ++++G+      + A  +FR+   +D+  
Sbjct: 22  ARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLAS 81

Query: 251 YNAMIEGYSISIETARKALEVHCQL----------------IKNVFFED-VKLG------ 287
           YNA+I G S+  +T   A      +                +++    D ++L       
Sbjct: 82  YNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPER 141

Query: 288 -----SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
                + L+      G++++ARR+FD M  ++V  WT+M+ GY + G   +A  LF  M 
Sbjct: 142 NHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMP 201

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG--RAG 400
               + N V++   +S     G V+  R++FE M       P+    +    L+G  +AG
Sbjct: 202 ----KRNVVSWTAMISGYAQNGEVNLARKLFEVM-------PERNEVSWTAMLVGYIQAG 250

Query: 401 SLEQALKFVLEMPEKP 416
            +E A +    MPE P
Sbjct: 251 HVEDAAELFNAMPEHP 266



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 88/230 (38%), Gaps = 38/230 (16%)

Query: 224 ISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY----------SISIETARKALEVHC 273
           I+     G +E A   F     +    YNA++ GY           +      + L  + 
Sbjct: 24  IAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYN 83

Query: 274 QLIKNV------------------FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
            LI  +                  F   V   ++L+  Y + G + DA R+F  M ++N 
Sbjct: 84  ALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNH 143

Query: 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES 375
            ++T ++ G    G  N+A  LF  M +     + V +   LS    AG + + R +F+ 
Sbjct: 144 VSYTVLLGGLLDAGRVNEARRLFDEMPD----RDVVAWTAMLSGYCQAGRITEARALFDE 199

Query: 376 MERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
           M      K  +  +  M+    + G +  A K    MPE+ N   W A+L
Sbjct: 200 MP-----KRNVVSWTAMISGYAQNGEVNLARKLFEVMPER-NEVSWTAML 243


>gi|449442815|ref|XP_004139176.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Cucumis sativus]
          Length = 838

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 142/408 (34%), Positives = 233/408 (57%), Gaps = 10/408 (2%)

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE-RPDGYT 148
           + KCG +    Q+F E+ +R +  +  +I+G  +NG  E SL L ++++S G   P+  T
Sbjct: 132 YFKCGCVGLGMQVFYEMGERNVITWTAVISGLAQNGYHEHSLKLFKEMMSYGSVEPNSLT 191

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIV 208
           +  +L   T C     L    G  +H  I+K  +++D  + +AL+D Y K G+   A  +
Sbjct: 192 YLSLL---TACSGLEALKE--GCQIHGLIMKLGIQSDLCIGSALMDMYSKSGRIGEAWKI 246

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN---AMIEGYSISIETA 265
           F++  E +++  T +++GF   G  E+A +IF K ++  I +     +++ G   +  + 
Sbjct: 247 FELAEELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGNVVSVVLGVFGADTSL 306

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
           R   +VH  ++K  F  +  + + L++MY+KCG +D++ +VFD M+++N  TW SMI  +
Sbjct: 307 RLGQQVHSFVVKKNFICNPFVSNGLINMYSKCGALDESMKVFDRMRERNSVTWNSMIAAF 366

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
            ++G+  +AL+L+  MQ    +P  VTFL  L AC HAGLV KG E  +SM +D+ M P+
Sbjct: 367 ARHGDALKALQLYEDMQLEGAKPTDVTFLSLLHACSHAGLVKKGMEFLKSMTKDHGMNPR 426

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIF 445
            EH+AC+VD+LGRAG L +A  F+ ++PE+P   VW ALL +C L+ D ++   AA  +F
Sbjct: 427 SEHHACVVDMLGRAGMLSEARNFIEKLPEQPGLLVWQALLGACSLYGDSKIGKYAAEHLF 486

Query: 446 KLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
                D P  YV L+N  ++ G W        KMK  G  K+TG SW+
Sbjct: 487 S-ETPDSPVPYVLLANIYSSEGNWKERARTIRKMKEVGTAKETGISWI 533



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 60/265 (22%), Positives = 142/265 (53%), Gaps = 17/265 (6%)

Query: 182 VKADDVLYTALVDSYVKGGKTSY-------ARIVFDMMLEKNVICSTSMISGFMSQGFVE 234
           +  D + + AL+  +V+ G + +          VF  M E+NVI  T++ISG    G+ E
Sbjct: 111 ITRDTISWNALIGGFVRNGNSYFKCGCVGLGMQVFYEMGERNVITWTAVISGLAQNGYHE 170

Query: 235 DAEEIFRK-----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSA 289
            + ++F++     +VE + + Y +++   S  +E  ++  ++H  ++K     D+ +GSA
Sbjct: 171 HSLKLFKEMMSYGSVEPNSLTYLSLLTACS-GLEALKEGCQIHGLIMKLGIQSDLCIGSA 229

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349
           L+DMY+K G+I +A ++F+  ++ ++ + T ++ G+  NG   +A+++F  M +  ++ +
Sbjct: 230 LMDMYSKSGRIGEAWKIFELAEELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEID 289

Query: 350 YVTFLGALSACGHAGLVDKGREIFE-SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKF 408
                  L   G    +  G+++    +++++   P + +   ++++  + G+L++++K 
Sbjct: 290 GNVVSVVLGVFGADTSLRLGQQVHSFVVKKNFICNPFVSN--GLINMYSKCGALDESMKV 347

Query: 409 VLEMPEKPNSDVWAALLSSCRLHDD 433
              M E+ NS  W +++++   H D
Sbjct: 348 FDRMRER-NSVTWNSMIAAFARHGD 371



 Score = 75.5 bits (184), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 62/268 (23%), Positives = 124/268 (46%), Gaps = 18/268 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH  I K G++ +  I   L+ ++ K G +  A ++F+   +  + +   ++AG+  
Sbjct: 208 GCQIHGLIMKLGIQSDLCIGSALMDMYSKSGRIGEAWKIFELAEELDMVSLTVILAGFTH 267

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMIL---KASTCCRSNVPLPRNLGRMVHAQILKC 180
           NG  EE++ +  K++  G   DG   S++L    A T  R        LG+ VH+ ++K 
Sbjct: 268 NGCEEEAIQIFLKMLKMGIEIDGNVVSVVLGVFGADTSLR--------LGQQVHSFVVKK 319

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
           +   +  +   L++ Y K G    +  VFD M E+N +   SMI+ F   G    A +++
Sbjct: 320 NFICNPFVSNGLINMYSKCGALDESMKVFDRMRERNSVTWNSMIAAFARHGDALKALQLY 379

Query: 241 R----KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSA-LVDMYA 295
                +  +   V + +++   S +    +K +E    + K+          A +VDM  
Sbjct: 380 EDMQLEGAKPTDVTFLSLLHACSHA-GLVKKGMEFLKSMTKDHGMNPRSEHHACVVDMLG 438

Query: 296 KCGKIDDARRVFDHM-QQKNVFTWTSMI 322
           + G + +AR   + + +Q  +  W +++
Sbjct: 439 RAGMLSEARNFIEKLPEQPGLLVWQALL 466



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 86/192 (44%), Gaps = 53/192 (27%)

Query: 271 VHCQLIKNV----FFEDVKLGSALVDMYAKCGKIDDARRVFD------------------ 308
           +H  +IK+      +  V + ++L+ MY +CGK+ DA +VFD                  
Sbjct: 67  LHASIIKSFELSNHYNGVVIMNSLISMYDRCGKLPDAVKVFDEMITRDTISWNALIGGFV 126

Query: 309 --------------------HMQQKNVFTWTSMIDGYGKNGNPNQALELFC-MMQECCVQ 347
                                M ++NV TWT++I G  +NG    +L+LF  MM    V+
Sbjct: 127 RNGNSYFKCGCVGLGMQVFYEMGERNVITWTAVISGLAQNGYHEHSLKLFKEMMSYGSVE 186

Query: 348 PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC----MVDLLGRAGSLE 403
           PN +T+L  L+AC     + +G +I         MK  ++   C    ++D+  ++G + 
Sbjct: 187 PNSLTYLSLLTACSGLEALKEGCQI-----HGLIMKLGIQSDLCIGSALMDMYSKSGRIG 241

Query: 404 QALKFVLEMPEK 415
           +A K + E+ E+
Sbjct: 242 EAWK-IFELAEE 252


>gi|297722071|ref|NP_001173399.1| Os03g0317100 [Oryza sativa Japonica Group]
 gi|255674461|dbj|BAH92127.1| Os03g0317100 [Oryza sativa Japonica Group]
          Length = 706

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 160/507 (31%), Positives = 260/507 (51%), Gaps = 64/507 (12%)

Query: 27  QTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKL 86
           QT P       S+  P +  S  S L+ Y+      +GL   A      +    ++S  +
Sbjct: 94  QTLPDAAAALASIPFPPSVVSFTSLLRGYVR-----HGLLADAIRLFQQMPERNHVSYTV 148

Query: 87  LILHL-KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV-----RKLVSS 140
           L+  L   G +  A ++FDE+P R + A+  M++GY + G++ E+ +L      R +VS 
Sbjct: 149 LLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMPKRNVVSW 208

Query: 141 GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGG 200
                GY  +            V L R L  ++  +        ++V +TA++  Y++ G
Sbjct: 209 TAMISGYAQN----------GEVNLARKLFEVMPER--------NEVSWTAMLVGYIQAG 250

Query: 201 KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS- 259
               A  +F+ M E  V    +M+ GF  +G V+ A+ +F K  E+D   ++AMI+ Y  
Sbjct: 251 HVEDAAELFNAMPEHPVAACNAMMVGFGQRGMVDAAKTVFEKMCERDDGTWSAMIKAYEQ 310

Query: 260 --------------------------ISIETARKAL-------EVHCQLIKNVFFEDVKL 286
                                     ISI T   AL       EVH  +++  F  DV  
Sbjct: 311 NEFLMEALSTFREMLWRGVRPNYPSVISILTVCAALAVLDYGREVHAAMLRCSFDMDVFA 370

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
            SAL+ MY KCG +D A+RVF   + K++  W SMI GY ++G   QAL +F  M+   +
Sbjct: 371 VSALITMYIKCGNLDKAKRVFHTFEPKDIVMWNSMITGYAQHGLGEQALGIFHDMRLAGM 430

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
            P+ +T++GAL+AC + G V +GREIF SM  + S++P  EHY+CMVDLLGR+G +E+A 
Sbjct: 431 SPDGITYIGALTACSYTGKVKEGREIFNSMTVNSSIRPGAEHYSCMVDLLGRSGLVEEAF 490

Query: 407 KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
             +  MP +P++ +W AL+ +CR+H + E+A  AA ++ +L   +  G YV LS+   + 
Sbjct: 491 DLIKNMPVEPDAVIWGALMGACRMHRNAEIAEFAAKKLLELEPGN-AGPYVLLSHIYTSV 549

Query: 467 GKWDSVTELREKMKLRGVLKDTGCSWV 493
           G+W+  +++R+ +  R + K  GCSW+
Sbjct: 550 GRWEDASKMRKFISSRNLNKSPGCSWI 576



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 84/296 (28%), Positives = 149/296 (50%), Gaps = 26/296 (8%)

Query: 88  ILHL-KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDG 146
           I HL + G ++ A   F+ +P RT ++YN ++AGY +N   + +L L R++ S     D 
Sbjct: 24  IAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSR----DL 79

Query: 147 YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR 206
            +++ ++   +  R  +P          A +         V +T+L+  YV+ G  + A 
Sbjct: 80  ASYNALISGLSLRRQTLP-------DAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAI 132

Query: 207 IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS--IET 264
            +F  M E+N +  T ++ G +  G V +A  +F +  ++D+V + AM+ GY  +  I  
Sbjct: 133 RLFQQMPERNHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITE 192

Query: 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
           AR        L   +   +V   +A++  YA+ G+++ AR++F+ M ++N  +WT+M+ G
Sbjct: 193 ARA-------LFDEMPKRNVVSWTAMISGYAQNGEVNLARKLFEVMPERNEVSWTAMLVG 245

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM-ERD 379
           Y + G+   A ELF  M E  V       +G     G  G+VD  + +FE M ERD
Sbjct: 246 YIQAGHVEDAAELFNAMPEHPVAACNAMMVG----FGQRGMVDAAKTVFEKMCERD 297



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 60/256 (23%), Positives = 109/256 (42%), Gaps = 41/256 (16%)

Query: 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV 250
           A +    + G    AR  F+ M  +      ++++G+      + A  +FR+   +D+  
Sbjct: 22  ARIAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLAS 81

Query: 251 YNAMIEGYSISIETARKALEVHCQL----------------IKNVFFED-VKLG------ 287
           YNA+I G S+  +T   A      +                +++    D ++L       
Sbjct: 82  YNALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPER 141

Query: 288 -----SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
                + L+      G++++ARR+FD M  ++V  WT+M+ GY + G   +A  LF  M 
Sbjct: 142 NHVSYTVLLGGLLDAGRVNEARRLFDEMPDRDVVAWTAMLSGYCQAGRITEARALFDEMP 201

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG--RAG 400
               + N V++   +S     G V+  R++FE M       P+    +    L+G  +AG
Sbjct: 202 ----KRNVVSWTAMISGYAQNGEVNLARKLFEVM-------PERNEVSWTAMLVGYIQAG 250

Query: 401 SLEQALKFVLEMPEKP 416
            +E A +    MPE P
Sbjct: 251 HVEDAAELFNAMPEHP 266



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 52/230 (22%), Positives = 88/230 (38%), Gaps = 38/230 (16%)

Query: 224 ISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY----------SISIETARKALEVHC 273
           I+     G +E A   F     +    YNA++ GY           +      + L  + 
Sbjct: 24  IAHLARAGNIEGARAAFEAMPLRTTASYNALLAGYFRNRLPDAALGLFRRMPSRDLASYN 83

Query: 274 QLIKNV------------------FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
            LI  +                  F   V   ++L+  Y + G + DA R+F  M ++N 
Sbjct: 84  ALISGLSLRRQTLPDAAAALASIPFPPSVVSFTSLLRGYVRHGLLADAIRLFQQMPERNH 143

Query: 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES 375
            ++T ++ G    G  N+A  LF  M +     + V +   LS    AG + + R +F+ 
Sbjct: 144 VSYTVLLGGLLDAGRVNEARRLFDEMPD----RDVVAWTAMLSGYCQAGRITEARALFDE 199

Query: 376 MERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
           M      K  +  +  M+    + G +  A K    MPE+ N   W A+L
Sbjct: 200 MP-----KRNVVSWTAMISGYAQNGEVNLARKLFEVMPER-NEVSWTAML 243


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 167/510 (32%), Positives = 269/510 (52%), Gaps = 25/510 (4%)

Query: 2   PNLSRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLS-----NPLTATSL-------P 49
           P+L  IRS + + +H+  + L   N       +N  +LS     N +    L       P
Sbjct: 55  PDLFYIRSILLTHSHDAQFCLSLCNAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIP 114

Query: 50  SALQHYINSDTPFYGLKIHAHITKTG-VKPNTNISIKLLILHLKCGALKYAGQMFDELPQ 108
             L+          G +IHA   KTG V  N  +S  L+ L+  CG++    ++FDE P 
Sbjct: 115 LVLKALALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPH 174

Query: 109 RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRN 168
           R L ++  +I  + K G    ++    ++     R DG T  ++L A     SN+    N
Sbjct: 175 RDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVVLSAC----SNLG-DLN 229

Query: 169 LGRMVHAQILK-CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
           LG+ VH+ I    D+KAD  +  AL+D Y+K    + A  VFD M  KNV+   +MISG 
Sbjct: 230 LGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGL 289

Query: 228 MSQGFVEDAEEIFR----KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFED 283
             QG   +A + FR    K V+ D V    ++   + ++        VH  + +N    D
Sbjct: 290 AYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCA-NLGVLEIGKWVHAYMRRNHILAD 348

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
             +G+AL+DMYAKCG ID+A RVF+ M++++V+++T+MI G   +G  N A ++F  M  
Sbjct: 349 KFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFR 408

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE 403
             ++PN VTFLG L AC H GLV +G++ F  M   Y ++P+ EHY CM+DLLGRAG ++
Sbjct: 409 VGIEPNEVTFLGLLMACSHGGLVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVK 468

Query: 404 QALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL 463
           +A + + +M  +P+     ALL +CR+H +V++      ++ +L+  D  G Y+ ++N  
Sbjct: 469 EAEEIIHKMEIRPDVFACGALLGACRIHGNVDIGESVMQKLTELDP-DEEGTYILMTNLY 527

Query: 464 AAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           ++  +W    ++R+ MK + + K  GCS +
Sbjct: 528 SSVHRWKDALKIRKTMKNKKMRKTPGCSLI 557


>gi|225461979|ref|XP_002267354.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 632

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 166/507 (32%), Positives = 263/507 (51%), Gaps = 55/507 (10%)

Query: 28  TFP-PKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISI-K 85
           +FP P+  N + + N    +S    +    N ++PF   ++HA I KT    N  +SI  
Sbjct: 7   SFPIPQSPNRNQIHNVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKT----NAPLSILP 62

Query: 86  LLILHLKCG---ALKYAGQMFD--ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSS 140
           L  + L C    +  YA Q+F   E  +     +N  +    +     +++ L  +L   
Sbjct: 63  LTRVGLVCAFTPSFHYAQQIFKCVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQY 122

Query: 141 GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGG 200
              PD +T S +L+A   C + + L    GR++H  + K   +++  L   +V  Y   G
Sbjct: 123 DVCPDTFTCSSVLRA---CLNLLDLSN--GRILHGVVEKVGFRSNLYLQNMIVHLYASCG 177

Query: 201 KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI 260
           +   AR++F+ M +++V+    MI+  + QG  E A ++F +  E+++  + +MI GY +
Sbjct: 178 EMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGY-V 236

Query: 261 SIETARKALE---------VHCQLIKNV--------------------------FFEDVK 285
               A++A+          V C  +  V                          F  +V+
Sbjct: 237 QCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVR 296

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           + + L+DMY KCG +++A +VF+ M+++ V +W++MI G   +G   +AL LF  M +  
Sbjct: 297 ISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVG 356

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
           ++PN VTF+G L AC H GL+ +GR  F SM RDY + P++EHY CMVDLL RAG L +A
Sbjct: 357 IEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEA 416

Query: 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA-NDRPGAYVALSNTLA 464
            +F+L MP KPN  VW ALL +CR+H +VEMA  A   + +L+  ND  G YV LSN  A
Sbjct: 417 HEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLND--GYYVVLSNIYA 474

Query: 465 AAGKWDSVTELREKMKLRGVLKDTGCS 491
            AG+W+    +R+ MK R V K  G S
Sbjct: 475 EAGRWEDTARVRKFMKDRQVKKTPGWS 501


>gi|15239745|ref|NP_199702.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170778|sp|Q9FI80.1|PP425_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g48910
 gi|10177180|dbj|BAB10314.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|15810559|gb|AAL07167.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|332008359|gb|AED95742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 646

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 159/492 (32%), Positives = 267/492 (54%), Gaps = 67/492 (13%)

Query: 66  KIHAHITKTGVKPNTNISIKLLIL----HLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           +IHA   K+G   +T  + ++L       L    L YA ++F+++PQR   ++N +I G+
Sbjct: 41  QIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGF 100

Query: 122 LKNGQVEE--SLSLVRKLVSSG-ERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
            ++ + +   +++L  +++S     P+ +TF  +LKA  C ++        G+ +H   L
Sbjct: 101 SESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKA--CAKTG---KIQEGKQIHGLAL 155

Query: 179 KCDVKADD---------------------------------------------VLYTALV 193
           K     D+                                             VL+  ++
Sbjct: 156 KYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMI 215

Query: 194 DSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----V 249
           D Y++ G    AR++FD M +++V+   +MISG+   GF +DA E+FR+  + DI    V
Sbjct: 216 DGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYV 275

Query: 250 VYNAMIEGYSI--SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVF 307
              +++   S   S+E   + L ++ +    +  +DV LGSAL+DMY+KCG I+ A  VF
Sbjct: 276 TLVSVLPAISRLGSLELG-EWLHLYAE-DSGIRIDDV-LGSALIDMYSKCGIIEKAIHVF 332

Query: 308 DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367
           + + ++NV TW++MI+G+  +G    A++ FC M++  V+P+ V ++  L+AC H GLV+
Sbjct: 333 ERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVE 392

Query: 368 KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
           +GR  F  M     ++P++EHY CMVDLLGR+G L++A +F+L MP KP+  +W ALL +
Sbjct: 393 EGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGA 452

Query: 428 CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487
           CR+  +VEM    AN +  +  +D  GAYVALSN  A+ G W  V+E+R +MK + + KD
Sbjct: 453 CRMQGNVEMGKRVANILMDMVPHD-SGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKD 511

Query: 488 TGCSWVGTESGL 499
            GCS +  +  L
Sbjct: 512 PGCSLIDIDGVL 523



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 7/116 (6%)

Query: 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG----KIDDARRVFDHMQQKNVFTWT 319
           T R   ++H   IK+    D    + ++   A        +D A ++F+ M Q+N F+W 
Sbjct: 35  TIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWN 94

Query: 320 SMIDGYGKNGNPNQ--ALELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           ++I G+ ++       A+ LF  MM +  V+PN  TF   L AC   G + +G++I
Sbjct: 95  TIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQI 150



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 56/284 (19%), Positives = 120/284 (42%), Gaps = 52/284 (18%)

Query: 35  NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           NY +L + L A S   +L+          G  +H +   +G++ +  +   L+ ++ KCG
Sbjct: 273 NYVTLVSVLPAISRLGSLE---------LGEWLHLYAEDSGIRIDDVLGSALIDMYSKCG 323

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
            ++ A  +F+ LP+  +  ++ MI G+  +GQ  +++    K+  +G RP    +  +L 
Sbjct: 324 IIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLT 383

Query: 155 ASTCCRSNV------------------PLPRNLGRMV------------HAQILKCDVKA 184
           A  C    +                  P   + G MV               IL   +K 
Sbjct: 384 A--CSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKP 441

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIFR 241
           DDV++ AL+ +    G     + V +++++    +     ++ + + SQG   +  E+  
Sbjct: 442 DDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRL 501

Query: 242 KTVEKDI--------VVYNAMIEGYSISIETARKALEVHCQLIK 277
           +  EKDI        +  + ++  + +  ++  KA E++  L++
Sbjct: 502 RMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVE 545


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 153/459 (33%), Positives = 247/459 (53%), Gaps = 15/459 (3%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           + PS L+  I       G +IH+ I KT  + N  +   L+ ++ K G L  A  +    
Sbjct: 452 TYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRF 511

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
             + + ++  MIAGY +    +++L+  R+++  G R D    +    A + C     L 
Sbjct: 512 AGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLT---NAVSACAGLQALK 568

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
              G+ +HAQ       +D     ALV  Y + GK   + + F+     + I   +++SG
Sbjct: 569 E--GQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSG 626

Query: 227 FMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETA--RKALEVHCQLIKNVF 280
           F   G  E+A  +F    R+ ++ +   + + ++  S   ETA  ++  +VH  + K  +
Sbjct: 627 FQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAAS---ETANMKQGKQVHAVITKTGY 683

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             + ++ +AL+ MYAKCG I DA + F  +  KN  +W ++I+ Y K+G  ++AL+ F  
Sbjct: 684 DSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQ 743

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           M    V+PN+VT +G LSAC H GLVDKG   FESM  +Y + PK EHY C+VD+L RAG
Sbjct: 744 MIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAG 803

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
            L +A +F+ EMP KP++ VW  LLS+C +H ++E+   AA+ + +L   D    YV LS
Sbjct: 804 LLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPED-SATYVLLS 862

Query: 461 NTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           N  A + KWD+    R+KMK +GV K+ G SW+  ++ +
Sbjct: 863 NLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSI 901



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 104/411 (25%), Positives = 198/411 (48%), Gaps = 17/411 (4%)

Query: 60  TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIA 119
           T F G ++HA+ TK G   N  I   LL L+ KC  ++ A   F E     +  +N M+ 
Sbjct: 364 TLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLV 423

Query: 120 GYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
            Y     +  S  + R++      P+ YT+  ILK  TC R        LG  +H+QI+K
Sbjct: 424 AYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILK--TCIRLG---DLELGEQIHSQIIK 478

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
            + + +  + + L+D Y K GK   A  +      K+V+  T+MI+G+    F + A   
Sbjct: 479 TNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTT 538

Query: 240 FRKTVEK-----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
           FR+ +++     ++ + NA+       ++  ++  ++H Q   + F  D+   +ALV +Y
Sbjct: 539 FRQMLDRGIRSDEVGLTNAV--SACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLY 596

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           ++CGKI+++   F+  +  +   W +++ G+ ++GN  +AL +F  M    +  N  TF 
Sbjct: 597 SRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFG 656

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
            A+ A      + +G+++   + +      + E    ++ +  + GS+  A K  LE+  
Sbjct: 657 SAVKAASETANMKQGKQVHAVITKT-GYDSETEVCNALISMYAKCGSISDAEKQFLEVST 715

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465
           K N   W A++++   H     A  + +++  +++N RP  +V L   L+A
Sbjct: 716 K-NEVSWNAIINAYSKHGFGSEALDSFDQM--IHSNVRPN-HVTLVGVLSA 762



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 184/380 (48%), Gaps = 21/380 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G K+H+ I K G+  N  +S KL   +L  G L  A ++FDE+P+RT+  +N MI     
Sbjct: 64  GRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELAS 123

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
              + E   L  ++VS    P+  TFS +L+A   CR    +  ++   +HA+IL   ++
Sbjct: 124 RNLIGEVFGLFVRMVSENVTPNEGTFSGVLEA---CRGG-SVAFDVVEQIHARILYQGLR 179

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
              V+   L+D Y + G    AR VFD +  K+     +MISG        +A  +F   
Sbjct: 180 DSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLF--- 236

Query: 244 VEKDIVVYNAMIEGYSIS--------IETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
              D+ V   M   Y+ S        IE+     ++H  ++K  F  D  + +ALV +Y 
Sbjct: 237 --CDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYF 294

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
             G +  A  +F +M Q++  T+ ++I+G  + G   +A+ELF  M    ++P+  T   
Sbjct: 295 HLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLAS 354

Query: 356 ALSACGHAGLVDKGREIFE-SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
            + AC   G + +G+++   + +  ++   K+E    +++L  +   +E AL + LE  E
Sbjct: 355 LVVACSADGTLFRGQQLHAYTTKLGFASNNKIE--GALLNLYAKCADIETALDYFLE-TE 411

Query: 415 KPNSDVWAALLSSCRLHDDV 434
             N  +W  +L +  L DD+
Sbjct: 412 VENVVLWNVMLVAYGLLDDL 431



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 163/356 (45%), Gaps = 15/356 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IHA I   G++ +T +   L+ L+ + G +  A ++FD L  +  S++  MI+G  KN 
Sbjct: 168 QIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNE 227

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              E++ L   +   G  P  Y FS +L A   C+    L   +G  +H  +LK    +D
Sbjct: 228 CEAEAIRLFCDMYVLGIMPTPYAFSSVLSA---CKKIESLE--IGEQLHGLVLKLGFSSD 282

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT-- 243
             +  ALV  Y   G    A  +F  M +++ +   ++I+G    G+ E A E+F++   
Sbjct: 283 TYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHL 342

Query: 244 --VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
             +E D     +++   S    T  +  ++H    K  F  + K+  AL+++YAKC  I+
Sbjct: 343 DGLEPDSNTLASLVVACSAD-GTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIE 401

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            A   F   + +NV  W  M+  YG   +   +  +F  MQ   + PN  T+   L  C 
Sbjct: 402 TALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 461

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYAC--MVDLLGRAGSLEQALKFVLEMPEK 415
             G ++ G +I   + +      ++  Y C  ++D+  + G L+ A   ++    K
Sbjct: 462 RLGDLELGEQIHSQIIK---TNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK 514



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/374 (25%), Positives = 165/374 (44%), Gaps = 57/374 (15%)

Query: 127 VEESLSLVRKLVSS----GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           + E  S   K + S    G RP+  T   +L+   C ++N  L    GR +H+QILK  +
Sbjct: 21  ISEDESFQEKRIDSVENRGIRPNHQTLKWLLEG--CLKTNGSLDE--GRKLHSQILKLGL 76

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            ++  L   L D Y+  G    A  VFD M E+ +     MI    S+  + +   +F +
Sbjct: 77  DSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVR 136

Query: 243 TVEKDIV----VYNAMIE---GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
            V +++      ++ ++E   G S++ +      ++H +++     +   + + L+D+Y+
Sbjct: 137 MVSENVTPNEGTFSGVLEACRGGSVAFDVVE---QIHARILYQGLRDSTVVCNPLIDLYS 193

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           + G +D ARRVFD ++ K+  +W +MI G  KN    +A+ LFC M    + P    F  
Sbjct: 194 RNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSS 253

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            LSAC          +  ES+E                  +G     EQ    VL++   
Sbjct: 254 VLSAC----------KKIESLE------------------IG-----EQLHGLVLKLGFS 280

Query: 416 PNSDVWAALLSSCRLHDDVEMAN-IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
            ++ V  AL+ S   H    + N I+A  IF   +      Y  L N L+  G  +   E
Sbjct: 281 SDTYVCNALV-SLYFH----LGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAME 335

Query: 475 LREKMKLRGVLKDT 488
           L ++M L G+  D+
Sbjct: 336 LFKRMHLDGLEPDS 349


>gi|297735486|emb|CBI17926.3| unnamed protein product [Vitis vinifera]
          Length = 602

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 154/464 (33%), Positives = 247/464 (53%), Gaps = 44/464 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA + +TG   +  +S  LL  ++ CG +    Q+FDE+ Q  L  +  +I  Y+ 
Sbjct: 110 GEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVC 169

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLG--RMVHAQILKCD 181
               E++L L R +   G  PD    S ++ A         L  +LG  + +H  I K  
Sbjct: 170 VTFPEKALELFRTMREVGLTPDMVAISTVVSACG-------LLGDLGVAKAMHCFIEKSG 222

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           ++ D  + + L+ +Y + G   YA   F     KN++   +MI   +    +E  +++F+
Sbjct: 223 IEVDAFVSSTLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQ 282

Query: 242 KTVEKDIVVYNAMIEGY------------------------------SISIETARKALE- 270
              ++D+V +N+MI G+                              ++S   +  AL+ 
Sbjct: 283 SMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDT 342

Query: 271 ---VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
              +H  + KN    D  L S+L+DMY+KCG ID A ++F+   ++++FTWTS++ G   
Sbjct: 343 GAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAVQIFEESTRRDLFTWTSIVCGLAM 402

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           +G   +AL  F  M+E  VQP+ VT +G LSAC HAGL+D+G   F+SME+ + + PK+E
Sbjct: 403 HGRGEKALHYFSKMKEAQVQPDDVTMVGVLSACAHAGLLDQGWWYFQSMEKVFGLVPKVE 462

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           HY CMVDLLGR G L++A   ++ MP + N  +W A LS+CR+H++VE+  +AA  +  L
Sbjct: 463 HYGCMVDLLGRMGCLKEAYDLIMGMPMEANEIIWGAFLSACRVHNNVELGEVAARRLLGL 522

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
           +  D P A V LSN  A   KWD    LR+++K +G+ K  GCS
Sbjct: 523 DPRD-PWARVMLSNMYAEEAKWDRSMGLRKEIKKKGLKKSPGCS 565



 Score =  110 bits (275), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/366 (24%), Positives = 157/366 (42%), Gaps = 55/366 (15%)

Query: 114 YNYMIAGYLKNGQVEESLSLVRKL--VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR 171
           +N MI   ++NG +     L+  +  + +G RP+G+TF  +LKA    +         G 
Sbjct: 57  WNTMIRKQVENGLITRDPPLLYYMQGLRAGLRPNGHTFMYLLKALVSGQE-----VKEGE 111

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
            VHA +++      + +  AL+  YV  G     R VFD M +  ++  T +I  ++   
Sbjct: 112 EVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWTLIIRAYVCVT 171

Query: 232 FVEDAEEIFRKTVE----KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG 287
           F E A E+FR   E     D+V  + ++    + +     A  +HC + K+    D  + 
Sbjct: 172 FPEKALELFRTMREVGLTPDMVAISTVVSACGL-LGDLGVAKAMHCFIEKSGIEVDAFVS 230

Query: 288 SALVDMYAKCGKIDDARR-------------------------------VFDHMQQKNVF 316
           S L+  Y +CG +D A R                               +F  M  ++V 
Sbjct: 231 STLISTYGECGSLDYAYRFFQETPMKNIVVWNTMIHQSVEHNNLELGKQLFQSMPDRDVV 290

Query: 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF--- 373
           +W SMI G+ + G   +AL  F  M+   V PN +T L  LSAC   G +D G  I    
Sbjct: 291 SWNSMIGGFARIGQYQEALTWFHEMEFSGVSPNALTLLSTLSACASHGALDTGAWIHAYV 350

Query: 374 --ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
               M RD S+       + ++D+  + G +++A++ + E   + +   W +++    +H
Sbjct: 351 DKNDMNRDGSLD------SSLIDMYSKCGDIDKAVQ-IFEESTRRDLFTWTSIVCGLAMH 403

Query: 432 DDVEMA 437
              E A
Sbjct: 404 GRGEKA 409



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 56/225 (24%), Positives = 105/225 (46%), Gaps = 6/225 (2%)

Query: 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWT 319
           +S +  ++  EVH  +++  F     +  AL+  Y  CG +   R+VFD M+Q  +  WT
Sbjct: 102 VSGQEVKEGEEVHASVVRTGFACSEFVSGALLGFYVACGLVGKGRQVFDEMRQPGLVLWT 161

Query: 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD 379
            +I  Y     P +ALELF  M+E  + P+ V     +SACG  G +   + +   +E+ 
Sbjct: 162 LIIRAYVCVTFPEKALELFRTMREVGLTPDMVAISTVVSACGLLGDLGVAKAMHCFIEKS 221

Query: 380 YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANI 439
             ++      + ++   G  GSL+ A +F  E P K N  VW  ++     H+++E+   
Sbjct: 222 -GIEVDAFVSSTLISTYGECGSLDYAYRFFQETPMK-NIVVWNTMIHQSVEHNNLEL--- 276

Query: 440 AANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGV 484
              ++F+   +    ++ ++    A  G++        +M+  GV
Sbjct: 277 -GKQLFQSMPDRDVVSWNSMIGGFARIGQYQEALTWFHEMEFSGV 320



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 58/115 (50%), Gaps = 3/115 (2%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           N LT  S  SA   +   DT   G  IHA++ K  +  + ++   L+ ++ KCG +  A 
Sbjct: 323 NALTLLSTLSACASHGALDT---GAWIHAYVDKNDMNRDGSLDSSLIDMYSKCGDIDKAV 379

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           Q+F+E  +R L  +  ++ G   +G+ E++L    K+  +  +PD  T   +L A
Sbjct: 380 QIFEESTRRDLFTWTSIVCGLAMHGRGEKALHYFSKMKEAQVQPDDVTMVGVLSA 434


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 146/434 (33%), Positives = 242/434 (55%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           GL++H    K+ +  N  ++  +L ++ KCGAL  A  +FDE+  R   ++N +I    +
Sbjct: 378 GLQLHGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQ 437

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N    ++LS    ++ S   PD +T+  +LKA    R+      + G  VH +I+K  + 
Sbjct: 438 NESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRA-----FSNGMEVHGRIIKSGMG 492

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               + +ALVD Y K G    A  +   + E+ ++   ++ISGF  Q   ED++  F   
Sbjct: 493 LKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHM 552

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               VE D   Y  +++  + ++ T     ++H Q+IK     DV + S LVDMY+KCG 
Sbjct: 553 LEMGVEPDNFTYATVLDTCA-NLATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGN 611

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           + D+  +F    +++  TW +MI G+  +G   +ALELF  M    ++PN+ TF+  L A
Sbjct: 612 MHDSLLMFRKAPKRDSVTWNAMICGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLRA 671

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H G   KG   F+ M   Y+++P++EHY+CMVD+LGR+G +E+AL+ + +MP + ++ 
Sbjct: 672 CSHVGNAKKGLFYFQKMASIYALEPQLEHYSCMVDILGRSGQVEEALRLIQDMPFEADAI 731

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +W  LLS C++  +VE+A  AA+ + KL+  D   AY  LSN  A AG W  V+++R+ M
Sbjct: 732 IWRTLLSICKIQGNVEVAEKAASSLLKLDPED-SSAYTLLSNIYADAGMWQQVSKIRQTM 790

Query: 480 KLRGVLKDTGCSWV 493
           +   + K+ GCSW+
Sbjct: 791 RSHNLKKEPGCSWI 804



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 109/406 (26%), Positives = 193/406 (47%), Gaps = 52/406 (12%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYM------ 117
           G + HAH+  +G  P   ++  L+ +++KC AL+YA ++F+E+PQR + ++N M      
Sbjct: 43  GKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEMPQRDIVSWNTMVFGCAG 102

Query: 118 --------------------------IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
                                     I+GYL+NG +++S+++  K+   G   D  T ++
Sbjct: 103 AGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVFLKMRDLGVMFDHTTLAV 162

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
            LK  +     V     LG  +H   ++     D V  +ALVD Y K      +  VF  
Sbjct: 163 SLKICSLLEDQV-----LGIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSE 217

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN---AMIEGYSISIETARKA 268
           + +KN I  ++ I+G +    +    ++F++   K I V     A +      +  +R  
Sbjct: 218 LPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSASRLG 277

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
            ++HC  +K  F  DV +G+A +DMYAKC  + DA ++F  +   N+ ++ +MI GY +N
Sbjct: 278 TQLHCHALKTDFGSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARN 337

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSAC----GHA-GLVDKGREIFESMERDYSMK 383
               QA +LF  +Q+     + V+  GALSA     GH+ GL   G  I  ++  +  + 
Sbjct: 338 EQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGLAIKSNLSSNICVA 397

Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCR 429
                   ++D+ G+ G+L +A     EM E  +   W A++++C 
Sbjct: 398 NA------ILDMYGKCGALVEASGLFDEM-EIRDPVSWNAIITACE 436



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/407 (23%), Positives = 189/407 (46%), Gaps = 16/407 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH    + G   +      L+ ++ KC +L+ +  +F ELP +   +++  IAG ++
Sbjct: 176 GIQIHGIAVQMGFDYDVVTGSALVDMYAKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQ 235

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N Q+   L L +++   G      T++ + ++     ++      LG  +H   LK D  
Sbjct: 236 NDQLLRGLKLFKEMQRKGIGVSQSTYASVFRSCAGLSAS-----RLGTQLHCHALKTDFG 290

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM--SQGFVEDAEEIF- 240
           +D ++ TA +D Y K    S A  +F ++ + N+    +MI G+    QGF   A ++F 
Sbjct: 291 SDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNLQSYNAMIIGYARNEQGF--QAFKLFL 348

Query: 241 ---RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
              + +   D V  +  +   ++ I+   + L++H   IK+    ++ + +A++DMY KC
Sbjct: 349 QLQKNSFSFDEVSLSGALSAAAV-IKGHSEGLQLHGLAIKSNLSSNICVANAILDMYGKC 407

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G + +A  +FD M+ ++  +W ++I    +N +  + L  F  M    ++P+  T+   L
Sbjct: 408 GALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVL 467

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            AC        G E+   + +   M  KM   + +VD+  + G +E+A K    + E+  
Sbjct: 468 KACAGQRAFSNGMEVHGRIIKS-GMGLKMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTM 526

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464
              W A++S   L    E +    + + ++        Y  + +T A
Sbjct: 527 VS-WNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYATVLDTCA 572



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 88/183 (48%), Gaps = 5/183 (2%)

Query: 57  NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNY 116
           N  T   G +IHA + K  +  +  I+  L+ ++ KCG +  +  MF + P+R    +N 
Sbjct: 573 NLATVGLGKQIHAQMIKLELLSDVYITSTLVDMYSKCGNMHDSLLMFRKAPKRDSVTWNA 632

Query: 117 MIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
           MI G+  +G  EE+L L   ++    +P+  TF  +L+A +   +         +M    
Sbjct: 633 MICGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGLFYFQKMASIY 692

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVED 235
            L+  ++     Y+ +VD   + G+   A R++ DM  E + I   +++S    QG VE 
Sbjct: 693 ALEPQLEH----YSCMVDILGRSGQVEEALRLIQDMPFEADAIIWRTLLSICKIQGNVEV 748

Query: 236 AEE 238
           AE+
Sbjct: 749 AEK 751


>gi|296088765|emb|CBI38215.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 155/451 (34%), Positives = 241/451 (53%), Gaps = 47/451 (10%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           ++P  L+    S     G ++H    K G+  +  +S  L+ ++  C  ++ A ++FD  
Sbjct: 142 TIPFVLKACAESRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTS 201

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           PQR L ++  MI GY+K G   E + L                  I++ S          
Sbjct: 202 PQRDLVSWTTMIQGYVKMGFAREGVGLY-----------------IIRNS---------- 234

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
                         +V  D  +  ALVD Y+K G  ++AR VF  M  KNV+   SMISG
Sbjct: 235 --------------NVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISG 280

Query: 227 FMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
              +G  +++  +FRK     V+ D V   A++   + ++        VH  L +N    
Sbjct: 281 LAQKGQFKESLYMFRKMQRLGVKPDDVTLVAVLNSCA-NLGVLELGKWVHAYLDRNQIRA 339

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           D  +G+ALVDMYAKCG ID A  VF  M +K+V+++T+MI G   +G   +AL+LF  M 
Sbjct: 340 DGFIGNALVDMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMP 399

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
           +  ++P+ VTF+G L+AC H GLV++GR+ FE M   Y+++P++EHY CMVDLLGRAG +
Sbjct: 400 KMGIEPDEVTFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLI 459

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
            +A +F+  MP +P++ V  ALL +C++H  VE+      +I K+    + GAYV +SN 
Sbjct: 460 NEAEEFIRNMPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPR-KDGAYVLMSNI 518

Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            ++A +W    +LR+ MK R + K  GCS +
Sbjct: 519 YSSANRWRDALKLRKTMKERNLEKTPGCSSI 549


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 148/456 (32%), Positives = 254/456 (55%), Gaps = 15/456 (3%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L+ +S  S ++   N     +  ++H  + K G   + NI   L++ + KC A+  A ++
Sbjct: 293 LSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRL 352

Query: 103 FDELP-QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161
           F E+     + ++  MI+G+L+N   EE++ L  ++   G RP+ +T+S+IL A      
Sbjct: 353 FKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTA------ 406

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
              LP      VHAQ++K + +    + TAL+D+YVK GK   A  VF  + +K+++  +
Sbjct: 407 ---LPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWS 463

Query: 222 SMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIK 277
           +M++G+   G  E A ++F +  +  I      +++++   + +  +  +  + H   IK
Sbjct: 464 AMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIK 523

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
           +     + + SAL+ MYAK G I+ A  VF   ++K++ +W SMI GY ++G   +AL++
Sbjct: 524 SRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDV 583

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
           F  M++  V+ + VTF+G  +AC HAGLV++G + F+ M RD  + P  EH +CMVDL  
Sbjct: 584 FKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYS 643

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457
           RAG LE+A+K +  MP    S +W  +L++CR+H   E+  +AA +I  +   D   AYV
Sbjct: 644 RAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPED-SAAYV 702

Query: 458 ALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            LSN  A +G W    ++R+ M  R V K+ G SW+
Sbjct: 703 LLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWI 738



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 98/400 (24%), Positives = 187/400 (46%), Gaps = 38/400 (9%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
            +G ++H    K G   + ++   L+  ++K    K   ++FDE+ +R +  +  +I+GY
Sbjct: 110 LFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGY 169

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            +N   +E L+L  ++ + G +P+ +TF+  L         V      G  VH  ++K  
Sbjct: 170 ARNSMNDEVLTLFMRMQNEGTQPNSFTFAAAL--GVLAEEGVG---GRGLQVHTVVVKNG 224

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +     +  +L++ Y+K G    ARI+FD    K+V+   SMISG+ + G   +A  +F 
Sbjct: 225 LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFY 284

Query: 242 KTVEKDIVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
                 + +     A +     +++  R   ++HC ++K  F  D  + +AL+  Y+KC 
Sbjct: 285 SMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCT 344

Query: 299 KIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
            + DA R+F  +    NV +WT+MI G+ +N    +A++LF  M+   V+PN  T+   L
Sbjct: 345 AMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVIL 404

Query: 358 SACG-------HAGLV----DKGREIFESMERDYSMKPKMEH---------------YAC 391
           +A         HA +V    ++   +  ++   Y    K+E                ++ 
Sbjct: 405 TALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSA 464

Query: 392 MVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSC 428
           M+    + G  E A+K   E+ +   KPN   ++++L+ C
Sbjct: 465 MLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVC 504



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 79/269 (29%), Positives = 135/269 (50%), Gaps = 12/269 (4%)

Query: 99  AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAS-T 157
           A  +FD+ P R   +Y  ++ G+ ++G+ +E+  L   +   G   D   FS +LK S T
Sbjct: 46  AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSAT 105

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
            C          GR +H Q +K     D  + T+LVD+Y+KG      R VFD M E+NV
Sbjct: 106 LC------DELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNV 159

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHC 273
           +  T++ISG+      ++   +F +      + +   + A + G         + L+VH 
Sbjct: 160 VTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAAL-GVLAEEGVGGRGLQVHT 218

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
            ++KN   + + + ++L+++Y KCG +  AR +FD  + K+V TW SMI GY  NG   +
Sbjct: 219 VVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLE 278

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGH 362
           AL +F  M+   V+ +  +F   +  C +
Sbjct: 279 ALGMFYSMRLNYVRLSESSFASVIKLCAN 307



 Score =  105 bits (261), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/209 (28%), Positives = 113/209 (54%), Gaps = 7/209 (3%)

Query: 222 SMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIK 277
           S++ GF   G  ++A+ +F    R  +E D  +++++++  S ++       ++HCQ IK
Sbjct: 63  SLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLK-VSATLCDELFGRQLHCQCIK 121

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
             F +DV +G++LVD Y K     D R+VFD M+++NV TWT++I GY +N   ++ L L
Sbjct: 122 FGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTL 181

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
           F  MQ    QPN  TF  AL      G+  +G ++   + ++  +   +     +++L  
Sbjct: 182 FMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKN-GLDKTIPVSNSLINLYL 240

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           + G++ +A + + +  E  +   W +++S
Sbjct: 241 KCGNVRKA-RILFDKTEVKSVVTWNSMIS 268


>gi|147771061|emb|CAN60969.1| hypothetical protein VITISV_033859 [Vitis vinifera]
          Length = 722

 Score =  259 bits (662), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 157/436 (36%), Positives = 230/436 (52%), Gaps = 36/436 (8%)

Query: 94  GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
           G L YA ++F ++ Q     YN +I GY K+    +S+ L  ++  +   PDG+TF+ +L
Sbjct: 289 GCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLL 348

Query: 154 KASTCCRSNVPL----------PRNLGRMVHA--------------------QILKCDVK 183
           K  +  R ++PL             LG   H                     Q+    V 
Sbjct: 349 KGRSRMRIDLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVG 408

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           AD V ++ LV ++V+ G+   AR VFD M E++V+  T M+SG+       +A E+FR+ 
Sbjct: 409 ADVVSWSGLVVAHVRAGELELARQVFDEMPERDVVSWTVMVSGYAQAKRSREALELFREM 468

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               V  D V    +I   + S+       EVH  + +N F   V L +AL+DMYAKCG 
Sbjct: 469 RDVGVRPDEVAMVIVISACT-SLGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGC 527

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +D A +VF++M++K++ TW SMI     +GN   A  +F +M    ++P+ VTFL  L+A
Sbjct: 528 MDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLXSGIRPDGVTFLALLTA 587

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
             H G VD G  +FESM+RDY ++  +EHY CMVD+LGRAG LE+A K +  M    N  
Sbjct: 588 YTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKLITSMSMPCNDV 647

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW ALL++CR++ DVEM      ++ +L   D  G Y+ L +   AAG+     ELR  M
Sbjct: 648 VWGALLAACRIYGDVEMGERVLKKLIELKP-DEGGYYILLRDIYVAAGRRAEAIELRRAM 706

Query: 480 KLRGVLKDTGCSWVGT 495
            + G  K  GCSWVG 
Sbjct: 707 DVNGAKKTLGCSWVGA 722



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 94/431 (21%), Positives = 180/431 (41%), Gaps = 90/431 (20%)

Query: 94  GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
           G L YA ++F ++ Q     YN +I GY K+    +S+ L  ++  +   PDG+TF+ +L
Sbjct: 135 GCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLL 194

Query: 154 KASTCCRSNVPL----------------------------------PRNLGRM------- 172
           K  +  R ++PL                                   ++L  M       
Sbjct: 195 KGRSRMRIDLPLIVASDEIHGAGVDYDKYKTLKSYISNKVMHMLPTSQSLASMAEACLAM 254

Query: 173 -----VHAQILKCDVKADDVLYTALVDSYVK---GGKTSYARIVFDMMLEKNVICSTSMI 224
                +HA+  + ++  +  L  A +  +      G   YA  +F  + + N     ++I
Sbjct: 255 QALKLIHARAFRANLH-NHALVLAKIFRFAAVSPNGCLHYADRLFSQIHQPNTFFYNTLI 313

Query: 225 SGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYS---ISIETARKALEVHCQLIK 277
            G+        + ++F    R  V+ D   +  +++G S   I +     + E+H  ++K
Sbjct: 314 RGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLLKGRSRMRIDLPLIVASDEIHGAVLK 373

Query: 278 ---------------------------NVFFE----DVKLGSALVDMYAKCGKIDDARRV 306
                                       VF E    DV   S LV  + + G+++ AR+V
Sbjct: 374 LGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVGADVVSWSGLVVAHVRAGELELARQV 433

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           FD M +++V +WT M+ GY +     +ALELF  M++  V+P+ V  +  +SAC   G +
Sbjct: 434 FDEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPDEVAMVIVISACTSLGDL 493

Query: 367 DKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           + G E+   ++ +      +     ++D+  + G ++ A + V    E+ +   W +++S
Sbjct: 494 ETGFEVHRYIDEN-GFGWMVSLCNALIDMYAKCGCMDLAWQ-VFNNMERKSLITWNSMIS 551

Query: 427 SCRLHDDVEMA 437
           +C  H + E A
Sbjct: 552 ACANHGNAEDA 562



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 140/329 (42%), Gaps = 49/329 (14%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           L++ H++ G L+ A Q+FDE+P+R + ++  M++GY +  +  E+L L R++   G RPD
Sbjct: 417 LVVAHVRAGELELARQVFDEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPD 476

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
                +++ A   C S   L    G  VH  I +        L  AL+D Y K G    A
Sbjct: 477 EVAMVIVISA---CTSLGDL--ETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLA 531

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETA 265
             VF+ M  K++I   SMIS   + G  EDA  +F   +   I                 
Sbjct: 532 WQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLXSGIR---------------- 575

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ-----QKNVFTWTS 320
                            D     AL+  Y   G +DD   +F+ MQ     +  V  +  
Sbjct: 576 ----------------PDGVTFLALLTAYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGC 619

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
           M+D  G+ G   +A +L   M   C   N V +   L+AC   G V+ G  + + +    
Sbjct: 620 MVDMLGRAGRLEEAYKLITSMSMPC---NDVVWGALLAACRIYGDVEMGERVLKKL---I 673

Query: 381 SMKP-KMEHYACMVDLLGRAGSLEQALKF 408
            +KP +  +Y  + D+   AG   +A++ 
Sbjct: 674 ELKPDEGGYYILLRDIYVAAGRRAEAIEL 702



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 11/186 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H +I + G     ++   L+ ++ KCG +  A Q+F+ + +++L  +N MI+    
Sbjct: 496 GFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISACAN 555

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKAST---CCRSNVPLPRNLGRMVHAQILKC 180
           +G  E++  +   ++ SG RPDG TF  +L A T          L  ++ R         
Sbjct: 556 HGNAEDAFRVFTLMLXSGIRPDGVTFLALLTAYTHKGWVDDGYGLFESMQR-------DY 608

Query: 181 DVKADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
            V+A    Y  +VD   + G+   A +++  M +  N +   ++++     G VE  E +
Sbjct: 609 GVEAGVEHYGCMVDMLGRAGRLEEAYKLITSMSMPCNDVVWGALLAACRIYGDVEMGERV 668

Query: 240 FRKTVE 245
            +K +E
Sbjct: 669 LKKLIE 674


>gi|296087156|emb|CBI33530.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 148/435 (34%), Positives = 246/435 (56%), Gaps = 12/435 (2%)

Query: 68  HAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV 127
           HAH  + G+  N  +   L+  + K   L+ A + F+E+ +  L ++N MI G  +N   
Sbjct: 184 HAHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAIKAFNEIMELDLVSWNIMIDGCARNNSK 243

Query: 128 EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV 187
           E ++ +  +++    R DG+T + I+K  TC +   P     G   H   +K  +  +  
Sbjct: 244 EHAVRMFSQMLKGNVRVDGFTLTSIIK--TCSK---PGDLKHGMQFHGSAIKLGLAHETP 298

Query: 188 LYTALVDSYVKGGKTSYARI-VFDMMLEKNVICSTSMISGFMSQGFVEDA----EEIFRK 242
           +Y AL+  Y K  K   + + +F  + E N+I  T+MISGFM     E+A    +E+ R 
Sbjct: 299 IYNALITMYSKCEKGVASPVKIFGSISEPNIISWTAMISGFMQNEQNEEAIGLFKEMLRL 358

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
            V ++   +++++  Y  ++    +  ++H ++IK+ F  D+ + +AL+DMY+KCG ++D
Sbjct: 359 GVRENDFSFSSILPVYG-NLANLEQGKQIHARIIKSWFGLDLSVNNALIDMYSKCGSLED 417

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           A  VF  M + +V + T+MI  YG++G   +ALE+   M+   + P+ VTFLG L AC H
Sbjct: 418 AHLVFMKMGKHDVVSCTTMIMSYGQHGKGKEALEILAEMKSEGLVPDGVTFLGCLYACSH 477

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
            GLV++G  +F+ M  D+++KPK EH+AC+VD+LGRAG L +A  F+ EM  + +  VW 
Sbjct: 478 GGLVEEGVRVFKIMIEDHNLKPKREHFACVVDMLGRAGRLNEAENFIDEMGIESDVLVWE 537

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
            LL +CR+H ++ +   +A +I +L    R G YV L+N  A  G W+    +REK+   
Sbjct: 538 TLLGACRVHGEMVLGEKSAQKIMELQPG-RHGPYVLLANIYAERGSWEDKVMVREKLVSH 596

Query: 483 GVLKDTGCSWVGTES 497
           G+ K  GCSWV  E+
Sbjct: 597 GLKKQVGCSWVALET 611



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 194/403 (48%), Gaps = 24/403 (5%)

Query: 21  TLVPPNQTFP-PKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPN 79
           +L  P +  P  KL+  D  S      S    LQ   ++     G+ +H ++ K  +   
Sbjct: 36  SLANPVEGIPFEKLETIDDHSFKFHQFS--QILQECTDAGDLRTGMSVHTYLVKLNINGF 93

Query: 80  TNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG-QVEESLSLVRKLV 138
             I  KLL L+LK G + +A Q+FD +P+R + ++N MI+  ++N     + + L  K+ 
Sbjct: 94  ILIWNKLLSLYLKFGHIHHAHQLFDTMPRRDVVSFNTMISASVRNNYDALDLVGLYSKMK 153

Query: 139 SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVK 198
               +P+  TF+ ++ A   C   + L   L  + HA  ++C + +++ + ++LVD Y K
Sbjct: 154 KEDVKPNHITFAGLIGA---CDGLIAL--RLRGIFHAHTVRCGLSSNEFVGSSLVDGYAK 208

Query: 199 GGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY 258
             K   A   F+ ++E +++    MI G       E A  +F + ++      N  ++G+
Sbjct: 209 QMKLEDAIKAFNEIMELDLVSWNIMIDGCARNNSKEHAVRMFSQMLKG-----NVRVDGF 263

Query: 259 SIS--IETARK------ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK-IDDARRVFDH 309
           +++  I+T  K       ++ H   IK     +  + +AL+ MY+KC K +    ++F  
Sbjct: 264 TLTSIIKTCSKPGDLKHGMQFHGSAIKLGLAHETPIYNALITMYSKCEKGVASPVKIFGS 323

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKG 369
           + + N+ +WT+MI G+ +N    +A+ LF  M    V+ N  +F   L   G+   +++G
Sbjct: 324 ISEPNIISWTAMISGFMQNEQNEEAIGLFKEMLRLGVRENDFSFSSILPVYGNLANLEQG 383

Query: 370 REIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
           ++I   + + +     +     ++D+  + GSLE A    ++M
Sbjct: 384 KQIHARIIKSW-FGLDLSVNNALIDMYSKCGSLEDAHLVFMKM 425



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 100/220 (45%), Gaps = 11/220 (5%)

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
           R  + VH  L+K      + + + L+ +Y K G I  A ++FD M +++V ++ +MI   
Sbjct: 76  RTGMSVHTYLVKLNINGFILIWNKLLSLYLKFGHIHHAHQLFDTMPRRDVVSFNTMISAS 135

Query: 326 GKNG-NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD-KGREIFESMERDYSMK 383
            +N  +    + L+  M++  V+PN++TF G + AC   GL+  + R IF +      + 
Sbjct: 136 VRNNYDALDLVGLYSKMKKEDVKPNHITFAGLIGACD--GLIALRLRGIFHAHTVRCGLS 193

Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANE 443
                 + +VD   +   LE A+K   E+ E  +   W  ++  C  ++  E A    ++
Sbjct: 194 SNEFVGSSLVDGYAKQMKLEDAIKAFNEIME-LDLVSWNIMIDGCARNNSKEHAVRMFSQ 252

Query: 444 IFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483
           + K N         ++  T +  G      +L+  M+  G
Sbjct: 253 MLKGNVRVDGFTLTSIIKTCSKPG------DLKHGMQFHG 286



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 95/200 (47%), Gaps = 5/200 (2%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           S  S L  Y N      G +IHA I K+    + +++  L+ ++ KCG+L+ A  +F ++
Sbjct: 366 SFSSILPVYGNLANLEQGKQIHARIIKSWFGLDLSVNNALIDMYSKCGSLEDAHLVFMKM 425

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
            +  + +   MI  Y ++G+ +E+L ++ ++ S G  PDG TF   L A     S+  L 
Sbjct: 426 GKHDVVSCTTMIMSYGQHGKGKEALEILAEMKSEGLVPDGVTFLGCLYAC----SHGGLV 481

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM-LEKNVICSTSMIS 225
               R+    I   ++K     +  +VD   + G+ + A    D M +E +V+   +++ 
Sbjct: 482 EEGVRVFKIMIEDHNLKPKREHFACVVDMLGRAGRLNEAENFIDEMGIESDVLVWETLLG 541

Query: 226 GFMSQGFVEDAEEIFRKTVE 245
                G +   E+  +K +E
Sbjct: 542 ACRVHGEMVLGEKSAQKIME 561


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 152/442 (34%), Positives = 245/442 (55%), Gaps = 16/442 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE--LPQRTLSAYNYMIAGYLK 123
           ++  +  + GV  NT +   L+ ++ KCG+L+ A  +F+   +  R  + +N MI+GYL+
Sbjct: 293 EVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLR 352

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G  E++L L  K+  +    D YT+  +  A    +       +LG+ VHA+ +K  ++
Sbjct: 353 SGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKC-----LSLGKKVHARAIKSGLE 407

Query: 184 ADDV-LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            + V +  A+ ++Y K G     R VF+ M ++++I  TS+++ +      + A EIF  
Sbjct: 408 VNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSN 467

Query: 243 TVEKDIVVYNAMIEGYSISIETARKAL-----EVHCQLIKNVFFEDVKLGSALVDMYAKC 297
              + I          S+ +  A   L     +VH  + K     D  + SALVDMYAKC
Sbjct: 468 MRAEGIAPNQFTFS--SVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKC 525

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G + DA++VF+ +   +  +WT++I G+ ++G  + AL+LF  M +  V+PN VTFL  L
Sbjct: 526 GCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVL 585

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            AC H GLV++G + F+ M++ Y + P+MEHYAC+VDLL R G L  A++F+  MP +PN
Sbjct: 586 FACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPN 645

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
             VW  LL +CR+H +VE+  +AA +I    A +    YV LSNT   +G +     LR 
Sbjct: 646 EMVWQTLLGACRVHGNVELGELAAQKILSFKA-ENSATYVLLSNTYIESGSYKDGLSLRH 704

Query: 478 KMKLRGVLKDTGCSWVGTESGL 499
            MK +GV K+ GCSW+     L
Sbjct: 705 VMKEQGVKKEPGCSWISVNGTL 726



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 192/436 (44%), Gaps = 23/436 (5%)

Query: 4   LSRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFY 63
           + +IR+S  + TH+        +    P     D   + L    L   L+  +++     
Sbjct: 27  IRQIRNSALTITHSAIQKPFATSGIKTPNSVKVDKTDSHLQIQPLVDLLRDCVDARFLKQ 86

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHL--KCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
              +H  + K+    + ++ +   + H   KC  +  A ++FD++ QR   ++  +IAG 
Sbjct: 87  AKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGL 146

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            +NG   +      ++ S G  PD + +S IL+      S       LG MVHAQI+   
Sbjct: 147 AENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDS-----IELGNMVHAQIVIRG 201

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
             +   + TAL++ Y K  +   +  VF+ M E NV+   +MI+GF S     DA ++F 
Sbjct: 202 FTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFL 261

Query: 242 KTVEKDIVVYNAMIEGYSISIETAR---KALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
           + + + +        G + +I   R   KA EV    ++     +  +G+AL+DM +KCG
Sbjct: 262 RMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCG 321

Query: 299 KIDDARRVFDHMQQKNVFT--WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
            + +AR +F+       F   W +MI GY ++G   +ALELF  M +  +  ++ T+   
Sbjct: 322 SLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSV 381

Query: 357 LSA-----CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
            +A     C   G     R I   +E +Y           + +   + GSLE   K V  
Sbjct: 382 FNAIAALKCLSLGKKVHARAIKSGLEVNYVSISN-----AVANAYAKCGSLEDVRK-VFN 435

Query: 412 MPEKPNSDVWAALLSS 427
             E  +   W +L+++
Sbjct: 436 RMEDRDLISWTSLVTA 451



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 54/95 (56%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           YG ++H  I K G+  +  I   L+ ++ KCG L  A ++F+ +      ++  +IAG+ 
Sbjct: 495 YGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHA 554

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           ++G V+++L L R++V  G  P+  TF  +L A +
Sbjct: 555 QHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACS 589


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 149/456 (32%), Positives = 260/456 (57%), Gaps = 17/456 (3%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
            A+ LP   Q    SD    G+ IH H+ K G+  +  +S  L+ ++ K G L+ A  +F
Sbjct: 225 VASILPVCAQ----SDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVF 280

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           D++  R L ++N +IA Y +N     +L   + +   G RPD  T  + L +     S+ 
Sbjct: 281 DQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTV-VSLTSIFSQLSDQ 339

Query: 164 PLPRN-LGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
            + R+ LG ++  + L  DV    V+  ALV+ Y K G  + A  VFD +  K+ I   +
Sbjct: 340 RISRSILGFVIRREWLDKDV----VIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNT 395

Query: 223 MISGFMSQGFVEDAEEIFRKTVE-KDIV----VYNAMIEGYSISIETARKALEVHCQLIK 277
           +++G+   G   +A + +    E +D +     + ++I  YS  +   ++ +++H +LIK
Sbjct: 396 LVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYS-HVGALQQGMKIHAKLIK 454

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
           N  + DV + + L+D+Y KCG+++DA  +F  + +     W ++I   G +G   +AL+L
Sbjct: 455 NSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQL 514

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
           F  M    V+ +++TF+  LSAC H+GLVD+G++ F+ M+++Y +KP ++HY CMVDLLG
Sbjct: 515 FKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLG 574

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457
           RAG LE+A + V  MP +P++ +W ALLS+C+++ + E+  +A++ + ++++ +  G YV
Sbjct: 575 RAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDS-ENVGYYV 633

Query: 458 ALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            LSN  A   KW+ V ++R   + RG+ K  G S V
Sbjct: 634 LLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSV 669



 Score =  161 bits (407), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 122/483 (25%), Positives = 241/483 (49%), Gaps = 48/483 (9%)

Query: 22  LVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTN 81
           L P   TFPP L+   SL +                      G K+H  + K G + +  
Sbjct: 120 LRPDFYTFPPILKACVSLVD----------------------GKKVHCCVFKMGFEDDVF 157

Query: 82  ISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG 141
           ++  L+ L+ + G L  A ++F ++P + + ++N MI+G+ +NG    +L ++ ++   G
Sbjct: 158 VAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEG 217

Query: 142 ERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK 201
            + D  T + IL    C +S+  +    G ++H  +LK  + +D  +  AL++ Y K G+
Sbjct: 218 VKMDTITVASIL--PVCAQSDDVIN---GVLIHLHVLKHGLDSDVFVSNALINMYSKFGR 272

Query: 202 TSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEG 257
              A++VFD M  ++++   S+I+ +        A   F+      +  D++   ++   
Sbjct: 273 LQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSI 332

Query: 258 YSISIETARKALEVHCQLIKNVFFE-DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF 316
           +S  +   R +  +   +I+  + + DV +G+ALV+MYAK G ++ A  VFD + +K+  
Sbjct: 333 FS-QLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTI 391

Query: 317 TWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNYVTFLGALSACGHAGLVDKGREIFES 375
           +W +++ GY +NG  ++A++ + MM+EC    PN  T++  + A  H G + +G +I   
Sbjct: 392 SWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAK 451

Query: 376 MERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVE 435
           + ++ S+   +    C++DL G+ G LE A+    E+P +  S  W A+++S  +H   E
Sbjct: 452 LIKN-SLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIP-RDTSVPWNAIIASLGIHGRGE 509

Query: 436 MANIAANEIFKLNANDRPGA----YVALSNTLAAAGKWDSVTE----LREKMKLRGVLKD 487
                A ++FK    +R  A    +V+L +  + +G  D   +    ++++  ++  LK 
Sbjct: 510 ----EALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKH 565

Query: 488 TGC 490
            GC
Sbjct: 566 YGC 568



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 179/369 (48%), Gaps = 18/369 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           K+HA +   G   N  +S KL+ L++  G +  +   FD + ++ + ++N +I+ Y++ G
Sbjct: 40  KLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFG 99

Query: 126 QVEESLSLVRKLVS----SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           +  E+++ V +L S       RPD YTF  ILKA   C S V      G+ VH  + K  
Sbjct: 100 KYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKA---CVSLVD-----GKKVHCCVFKMG 151

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
            + D  +  +LV  Y + G    A  VF  M  K+V    +MISGF   G    A  +  
Sbjct: 152 FEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLN 211

Query: 242 KT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           +     V+ D +   +++   + S +     L +H  ++K+    DV + +AL++MY+K 
Sbjct: 212 RMKGEGVKMDTITVASILPVCAQSDDVINGVL-IHLHVLKHGLDSDVFVSNALINMYSKF 270

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G++ DA+ VFD M+ +++ +W S+I  Y +N +P+ AL  F  MQ   ++P+ +T +   
Sbjct: 271 GRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLT 330

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           S           R I   + R   +   +     +V++  + G +  A     ++P K +
Sbjct: 331 SIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRK-D 389

Query: 418 SDVWAALLS 426
           +  W  L++
Sbjct: 390 TISWNTLVT 398



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 135/278 (48%), Gaps = 14/278 (5%)

Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
           N  + +HA +L      + VL T L++ YV  G  S +R  FD + +KN+    S+IS +
Sbjct: 36  NATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAY 95

Query: 228 MSQGFVEDA----EEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
           +  G   +A     ++F       +  D   +  +++   +S+   +K   VHC + K  
Sbjct: 96  VRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKA-CVSLVDGKK---VHCCVFKMG 151

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
           F +DV + ++LV +Y++ G +D A +VF  M  K+V +W +MI G+ +NGN   AL +  
Sbjct: 152 FEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLN 211

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
            M+   V+ + +T    L  C  +  V  G  I   + + + +   +     ++++  + 
Sbjct: 212 RMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLK-HGLDSDVFVSNALINMYSKF 270

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           G L+ A + V +  E  +   W +++++   ++D   A
Sbjct: 271 GRLQDA-QMVFDQMEVRDLVSWNSIIAAYEQNNDPSTA 307


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 149/456 (32%), Positives = 260/456 (57%), Gaps = 17/456 (3%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
            A+ LP   Q    SD    G+ IH H+ K G+  +  +S  L+ ++ K G L+ A  +F
Sbjct: 225 VASILPVCAQ----SDDVINGVLIHLHVLKHGLDSDVFVSNALINMYSKFGRLQDAQMVF 280

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           D++  R L ++N +IA Y +N     +L   + +   G RPD  T  + L +     S+ 
Sbjct: 281 DQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTV-VSLTSIFSQLSDQ 339

Query: 164 PLPRN-LGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
            + R+ LG ++  + L  DV    V+  ALV+ Y K G  + A  VFD +  K+ I   +
Sbjct: 340 RISRSILGFVIRREWLDKDV----VIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNT 395

Query: 223 MISGFMSQGFVEDAEEIFRKTVE-KDIV----VYNAMIEGYSISIETARKALEVHCQLIK 277
           +++G+   G   +A + +    E +D +     + ++I  YS  +   ++ +++H +LIK
Sbjct: 396 LVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYS-HVGALQQGMKIHAKLIK 454

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
           N  + DV + + L+D+Y KCG+++DA  +F  + +     W ++I   G +G   +AL+L
Sbjct: 455 NSLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQL 514

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
           F  M    V+ +++TF+  LSAC H+GLVD+G++ F+ M+++Y +KP ++HY CMVDLLG
Sbjct: 515 FKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLG 574

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457
           RAG LE+A + V  MP +P++ +W ALLS+C+++ + E+  +A++ + ++++ +  G YV
Sbjct: 575 RAGYLEKAYELVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDS-ENVGYYV 633

Query: 458 ALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            LSN  A   KW+ V ++R   + RG+ K  G S V
Sbjct: 634 LLSNIYANTEKWEGVIKVRSLARDRGLRKTPGWSSV 669



 Score =  161 bits (407), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 122/483 (25%), Positives = 241/483 (49%), Gaps = 48/483 (9%)

Query: 22  LVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTN 81
           L P   TFPP L+   SL +                      G K+H  + K G + +  
Sbjct: 120 LRPDFYTFPPILKACVSLVD----------------------GKKVHCCVFKMGFEDDVF 157

Query: 82  ISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG 141
           ++  L+ L+ + G L  A ++F ++P + + ++N MI+G+ +NG    +L ++ ++   G
Sbjct: 158 VAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEG 217

Query: 142 ERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK 201
            + D  T + IL    C +S+  +    G ++H  +LK  + +D  +  AL++ Y K G+
Sbjct: 218 VKMDTITVASIL--PVCAQSDDVIN---GVLIHLHVLKHGLDSDVFVSNALINMYSKFGR 272

Query: 202 TSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEG 257
              A++VFD M  ++++   S+I+ +        A   F+      +  D++   ++   
Sbjct: 273 LQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSI 332

Query: 258 YSISIETARKALEVHCQLIKNVFFE-DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF 316
           +S  +   R +  +   +I+  + + DV +G+ALV+MYAK G ++ A  VFD + +K+  
Sbjct: 333 FS-QLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTI 391

Query: 317 TWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNYVTFLGALSACGHAGLVDKGREIFES 375
           +W +++ GY +NG  ++A++ + MM+EC    PN  T++  + A  H G + +G +I   
Sbjct: 392 SWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSIIPAYSHVGALQQGMKIHAK 451

Query: 376 MERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVE 435
           + ++ S+   +    C++DL G+ G LE A+    E+P +  S  W A+++S  +H   E
Sbjct: 452 LIKN-SLYLDVFVATCLIDLYGKCGRLEDAMSLFYEIP-RDTSVPWNAIIASLGIHGRGE 509

Query: 436 MANIAANEIFKLNANDRPGA----YVALSNTLAAAGKWDSVTE----LREKMKLRGVLKD 487
                A ++FK    +R  A    +V+L +  + +G  D   +    ++++  ++  LK 
Sbjct: 510 ----EALQLFKDMLAERVKADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKH 565

Query: 488 TGC 490
            GC
Sbjct: 566 YGC 568



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 180/369 (48%), Gaps = 18/369 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           K+HA +   G   N  +S KL+ L++  G +  +   FD + ++ + ++N +I+ Y++ G
Sbjct: 40  KLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFG 99

Query: 126 QVEESLSLVRKLVS---SGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           +  E+++ V +L S    G  RPD YTF  ILKA   C S V      G+ VH  + K  
Sbjct: 100 KYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKA---CVSLVD-----GKKVHCCVFKMG 151

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
            + D  +  +LV  Y + G    A  VF  M  K+V    +MISGF   G    A  +  
Sbjct: 152 FEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLN 211

Query: 242 KT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           +     V+ D +   +++   + S +     L +H  ++K+    DV + +AL++MY+K 
Sbjct: 212 RMKGEGVKMDTITVASILPVCAQSDDVINGVL-IHLHVLKHGLDSDVFVSNALINMYSKF 270

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G++ DA+ VFD M+ +++ +W S+I  Y +N +P+ AL  F  MQ   ++P+ +T +   
Sbjct: 271 GRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLT 330

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           S           R I   + R   +   +     +V++  + G +  A     ++P K +
Sbjct: 331 SIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRK-D 389

Query: 418 SDVWAALLS 426
           +  W  L++
Sbjct: 390 TISWNTLVT 398



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/278 (24%), Positives = 135/278 (48%), Gaps = 14/278 (5%)

Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
           N  + +HA +L      + VL T L++ YV  G  S +R  FD + +KN+    S+IS +
Sbjct: 36  NATKKLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAY 95

Query: 228 MSQGFVEDA----EEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
           +  G   +A     ++F       +  D   +  +++   +S+   +K   VHC + K  
Sbjct: 96  VRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKA-CVSLVDGKK---VHCCVFKMG 151

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
           F +DV + ++LV +Y++ G +D A +VF  M  K+V +W +MI G+ +NGN   AL +  
Sbjct: 152 FEDDVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLN 211

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
            M+   V+ + +T    L  C  +  V  G  I   + + + +   +     ++++  + 
Sbjct: 212 RMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLK-HGLDSDVFVSNALINMYSKF 270

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           G L+ A + V +  E  +   W +++++   ++D   A
Sbjct: 271 GRLQDA-QMVFDQMEVRDLVSWNSIIAAYEQNNDPSTA 307


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 152/442 (34%), Positives = 245/442 (55%), Gaps = 16/442 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE--LPQRTLSAYNYMIAGYLK 123
           ++  +  + GV  NT +   L+ ++ KCG+L+ A  +F+   +  R  + +N MI+GYL+
Sbjct: 293 EVSGYALELGVDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNAMISGYLR 352

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G  E++L L  K+  +    D YT+  +  A    +       +LG+ VHA+ +K  ++
Sbjct: 353 SGFNEKALELFAKMCQNDIYLDHYTYCSVFNAIAALKC-----LSLGKKVHARAIKSGLE 407

Query: 184 ADDV-LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            + V +  A+ ++Y K G     R VF+ M ++++I  TS+++ +      + A EIF  
Sbjct: 408 VNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIEIFSN 467

Query: 243 TVEKDIVVYNAMIEGYSISIETARKAL-----EVHCQLIKNVFFEDVKLGSALVDMYAKC 297
              + I          S+ +  A   L     +VH  + K     D  + SALVDMYAKC
Sbjct: 468 MRAEGIAPNQFTFS--SVLVSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDMYAKC 525

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G + DA++VF+ +   +  +WT++I G+ ++G  + AL+LF  M +  V+PN VTFL  L
Sbjct: 526 GCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTFLCVL 585

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            AC H GLV++G + F+ M++ Y + P+MEHYAC+VDLL R G L  A++F+  MP +PN
Sbjct: 586 FACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMPVEPN 645

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
             VW  LL +CR+H +VE+  +AA +I    A +    YV LSNT   +G +     LR 
Sbjct: 646 EMVWQTLLGACRVHGNVELGELAAQKILSFKA-ENSATYVLLSNTYIESGSYKDGLSLRH 704

Query: 478 KMKLRGVLKDTGCSWVGTESGL 499
            MK +GV K+ GCSW+     L
Sbjct: 705 LMKEQGVKKEPGCSWISVNGTL 726



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 192/436 (44%), Gaps = 23/436 (5%)

Query: 4   LSRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFY 63
           + +IR+S  + TH+        +    P     D   + L    L   L+  +++     
Sbjct: 27  IRQIRNSALTITHSAIQKPFATSGIKTPNSVKVDKTDSHLQIQPLVDLLRDCVDARFLKQ 86

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHL--KCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
              +H  + K+    + ++ +   + H   KC  +  A ++FD++ QR   ++  +IAG 
Sbjct: 87  AKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGL 146

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            +NG   +      ++ S G  PD + +S IL+      S       LG MVHAQI+   
Sbjct: 147 AENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDS-----IELGNMVHAQIVIRG 201

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
             +   + TAL++ Y K  +   +  VF+ M E NV+   +MI+GF S     DA ++F 
Sbjct: 202 FTSHTFVSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFL 261

Query: 242 KTVEKDIVVYNAMIEGYSISIETAR---KALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
           + + + +        G + +I   R   KA EV    ++     +  +G+AL+DM +KCG
Sbjct: 262 RMMGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCG 321

Query: 299 KIDDARRVFDHMQQKNVFT--WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
            + +AR +F+       F   W +MI GY ++G   +ALELF  M +  +  ++ T+   
Sbjct: 322 SLQEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSV 381

Query: 357 LSA-----CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
            +A     C   G     R I   +E +Y           + +   + GSLE   K V  
Sbjct: 382 FNAIAALKCLSLGKKVHARAIKSGLEVNYVSISN-----AVANAYAKCGSLEDVRK-VFN 435

Query: 412 MPEKPNSDVWAALLSS 427
             E  +   W +L+++
Sbjct: 436 RMEDRDLISWTSLVTA 451



 Score = 58.5 bits (140), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 54/95 (56%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           YG ++H  I K G+  +  I   L+ ++ KCG L  A ++F+ +      ++  +IAG+ 
Sbjct: 495 YGQQVHGIICKVGLDMDKCIESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHA 554

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           ++G V+++L L R++V  G  P+  TF  +L A +
Sbjct: 555 QHGIVDDALQLFRRMVQLGVEPNAVTFLCVLFACS 589


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 153/459 (33%), Positives = 247/459 (53%), Gaps = 15/459 (3%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           + PS L+  I       G +IH+ I KT  + N  +   L+ ++ K G L  A  +    
Sbjct: 492 TYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRF 551

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
             + + ++  MIAGY +    +++L+  R+++  G R D    +    A + C     L 
Sbjct: 552 AGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLT---NAVSACAGLQALK 608

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
              G+ +HAQ       +D     ALV  Y + GK   + + F+     + I   +++SG
Sbjct: 609 E--GQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSG 666

Query: 227 FMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETA--RKALEVHCQLIKNVF 280
           F   G  E+A  +F    R+ ++ +   + + ++  S   ETA  ++  +VH  + K  +
Sbjct: 667 FQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAAS---ETANMKQGKQVHAVITKTGY 723

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             + ++ +AL+ MYAKCG I DA + F  +  KN  +W ++I+ Y K+G  ++AL+ F  
Sbjct: 724 DSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQ 783

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           M    V+PN+VT +G LSAC H GLVDKG   FESM  +Y + PK EHY C+VD+L RAG
Sbjct: 784 MIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAG 843

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
            L +A +F+ EMP KP++ VW  LLS+C +H ++E+   AA+ + +L   D    YV LS
Sbjct: 844 LLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPED-SATYVLLS 902

Query: 461 NTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           N  A + KWD+    R+KMK +GV K+ G SW+  ++ +
Sbjct: 903 NLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSI 941



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 104/411 (25%), Positives = 198/411 (48%), Gaps = 17/411 (4%)

Query: 60  TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIA 119
           T F G ++HA+ TK G   N  I   LL L+ KC  ++ A   F E     +  +N M+ 
Sbjct: 404 TLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLV 463

Query: 120 GYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
            Y     +  S  + R++      P+ YT+  ILK  TC R        LG  +H+QI+K
Sbjct: 464 AYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILK--TCIRLG---DLELGEQIHSQIIK 518

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
            + + +  + + L+D Y K GK   A  +      K+V+  T+MI+G+    F + A   
Sbjct: 519 TNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTT 578

Query: 240 FRKTVEK-----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
           FR+ +++     ++ + NA+       ++  ++  ++H Q   + F  D+   +ALV +Y
Sbjct: 579 FRQMLDRGIRSDEVGLTNAV--SACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLY 636

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           ++CGKI+++   F+  +  +   W +++ G+ ++GN  +AL +F  M    +  N  TF 
Sbjct: 637 SRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFG 696

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
            A+ A      + +G+++   + +      + E    ++ +  + GS+  A K  LE+  
Sbjct: 697 SAVKAASETANMKQGKQVHAVITKT-GYDSETEVCNALISMYAKCGSISDAEKQFLEVST 755

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465
           K N   W A++++   H     A  + +++  +++N RP  +V L   L+A
Sbjct: 756 K-NEVSWNAIINAYSKHGFGSEALDSFDQM--IHSNVRPN-HVTLVGVLSA 802



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/380 (27%), Positives = 184/380 (48%), Gaps = 21/380 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G K+H+ I K G+  N  +S KL   +L  G L  A ++FDE+P+RT+  +N MI     
Sbjct: 104 GRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELAS 163

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
              + E   L  ++VS    P+  TFS +L+A   CR    +  ++   +HA+IL   ++
Sbjct: 164 RNLIGEVFGLFVRMVSENVTPNEGTFSGVLEA---CRGG-SVAFDVVEQIHARILYQGLR 219

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
              V+   L+D Y + G    AR VFD +  K+     +MISG        +A  +F   
Sbjct: 220 DSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLF--- 276

Query: 244 VEKDIVVYNAMIEGYSIS--------IETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
              D+ V   M   Y+ S        IE+     ++H  ++K  F  D  + +ALV +Y 
Sbjct: 277 --CDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYF 334

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
             G +  A  +F +M Q++  T+ ++I+G  + G   +A+ELF  M    ++P+  T   
Sbjct: 335 HLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLAS 394

Query: 356 ALSACGHAGLVDKGREIFE-SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
            + AC   G + +G+++   + +  ++   K+E    +++L  +   +E AL + LE  E
Sbjct: 395 LVVACSADGTLFRGQQLHAYTTKLGFASNNKIE--GALLNLYAKCADIETALDYFLE-TE 451

Query: 415 KPNSDVWAALLSSCRLHDDV 434
             N  +W  +L +  L DD+
Sbjct: 452 VENVVLWNVMLVAYGLLDDL 471



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 91/356 (25%), Positives = 163/356 (45%), Gaps = 15/356 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IHA I   G++ +T +   L+ L+ + G +  A ++FD L  +  S++  MI+G  KN 
Sbjct: 208 QIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNE 267

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              E++ L   +   G  P  Y FS +L A   C+    L   +G  +H  +LK    +D
Sbjct: 268 CEAEAIRLFCDMYVLGIMPTPYAFSSVLSA---CKKIESLE--IGEQLHGLVLKLGFSSD 322

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT-- 243
             +  ALV  Y   G    A  +F  M +++ +   ++I+G    G+ E A E+F++   
Sbjct: 323 TYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHL 382

Query: 244 --VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
             +E D     +++   S    T  +  ++H    K  F  + K+  AL+++YAKC  I+
Sbjct: 383 DGLEPDSNTLASLVVACSAD-GTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIE 441

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            A   F   + +NV  W  M+  YG   +   +  +F  MQ   + PN  T+   L  C 
Sbjct: 442 TALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 501

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYAC--MVDLLGRAGSLEQALKFVLEMPEK 415
             G ++ G +I   + +      ++  Y C  ++D+  + G L+ A   ++    K
Sbjct: 502 RLGDLELGEQIHSQIIK---TNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK 554



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 160/371 (43%), Gaps = 51/371 (13%)

Query: 127 VEESLSLVRKLVSS----GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           + E  S   K + S    G RP+  T   +L+   C ++N  L    GR +H+QILK  +
Sbjct: 61  ISEDESFQEKRIDSVENRGIRPNHQTLKWLLEG--CLKTNGSLDE--GRKLHSQILKLGL 116

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            ++  L   L D Y+  G    A  VFD M E+ +     MI    S+  + +   +F +
Sbjct: 117 DSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVR 176

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK----LGSALVDMYAKCG 298
            V +++        G   +      A +V  Q+   + ++ ++    + + L+D+Y++ G
Sbjct: 177 MVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNG 236

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            +D ARRVFD ++ K+  +W +MI G  KN    +A+ LFC M    + P    F   LS
Sbjct: 237 FVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLS 296

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC          +  ES+E                  +G     EQ    VL++    ++
Sbjct: 297 AC----------KKIESLE------------------IG-----EQLHGLVLKLGFSSDT 323

Query: 419 DVWAALLSSCRLHDDVEMAN-IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
            V  AL+ S   H    + N I+A  IF   +      Y  L N L+  G  +   EL +
Sbjct: 324 YVCNALV-SLYFH----LGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 378

Query: 478 KMKLRGVLKDT 488
           +M L G+  D+
Sbjct: 379 RMHLDGLEPDS 389


>gi|357159954|ref|XP_003578611.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Brachypodium distachyon]
          Length = 600

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 161/503 (32%), Positives = 267/503 (53%), Gaps = 43/503 (8%)

Query: 11  VFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLK---- 66
           VF+S  N H T   PN      L+ Y   + P  A ++ SA+ H  +S T  + +K    
Sbjct: 78  VFASFPNPHATTFLPNTL----LRAYALNALPREAVAVFSAMPHR-DSFTYSFLIKALSS 132

Query: 67  --------IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMI 118
                   +H+H+ K G   +T +   L+  + K G    A ++F+E+P+R + ++N  +
Sbjct: 133 AGVAPLRAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAM 192

Query: 119 AGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA-QI 177
           A  ++ G+VE +    R++       D  +++ +L   T            G +  A ++
Sbjct: 193 AAMVRQGEVEGA----RRMFDEMLEKDTVSWNTLLDGYT----------KAGDVEEAFKL 238

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
            +C  + + V ++ +V  Y K G    AR++FD M  KN++  T M+S     G VE+A 
Sbjct: 239 FQCMPERNVVSWSTVVSGYCKKGDMEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAG 298

Query: 238 EIFRK----TVEKDIVVYNAMIEGYSISIETARKAL--EVHCQLIKNVFFEDVKLGSALV 291
           ++F +    +VE D+    A++   +   E+   AL   +H  +          + +AL+
Sbjct: 299 KLFTQMKEASVELDVA---AVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNALI 355

Query: 292 DMYAKCGKIDDARRVFD-HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY 350
           DM+ KCG I+ A  VFD  + +K+  +W ++I G+  +G+ ++AL+ F  M+     P+ 
Sbjct: 356 DMFCKCGCINRADYVFDTEIVEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFCPDA 415

Query: 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410
           VT +  LSAC H G V++GR  F +MERDY + P++EHY CM+DLLGR G +++A+  + 
Sbjct: 416 VTMINVLSACTHMGFVEEGRRYFANMERDYGVVPQIEHYGCMIDLLGRGGLIKEAVDLIK 475

Query: 411 EMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
            MP  PN  +W +LLS+CRLH +VE A IA NE+ KL  ++  G Y  LS+  A AGKW 
Sbjct: 476 SMPWDPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSN-AGNYAVLSSIYAEAGKWS 534

Query: 471 SVTELREKMKLRGVLKDTGCSWV 493
            + + R +MK  G  K +G SW+
Sbjct: 535 DMAKARMQMKGTGSQKSSGSSWI 557



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 70/288 (24%), Positives = 121/288 (42%), Gaps = 49/288 (17%)

Query: 165 LPRNLGRM-----VHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN--V 217
           LP  L R+     +HAQ+LK  +  D V  + L+ SY    +   +R VF      +   
Sbjct: 30  LPHGLPRLHHLQELHAQLLKHGLHLDPVAASKLLSSYALHRRLPASRGVFASFPNPHATT 89

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIK 277
               +++  +       +A  +F     +D   Y+ +I+  S +     +A  VH  ++K
Sbjct: 90  FLPNTLLRAYALNALPREAVAVFSAMPHRDSFTYSFLIKALSSAGVAPLRA--VHSHVVK 147

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDD-------------------------------ARRV 306
               ED  +G+AL+D Y+K G   D                               ARR+
Sbjct: 148 LGSIEDTYVGNALIDAYSKNGGFSDASKVFEEMPRRDVVSWNSAMAAMVRQGEVEGARRM 207

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           FD M +K+  +W +++DGY K G+  +A +LF    +C  + N V++   +S     G +
Sbjct: 208 FDEMLEKDTVSWNTLLDGYTKAGDVEEAFKLF----QCMPERNVVSWSTVVSGYCKKGDM 263

Query: 367 DKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
           +  R IF+ M         +  +  MV    + G +E+A K   +M E
Sbjct: 264 EMARVIFDKMP-----TKNLVTWTIMVSACAQNGLVEEAGKLFTQMKE 306


>gi|115486527|ref|NP_001068407.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|108864631|gb|ABG22570.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113645629|dbj|BAF28770.1| Os11g0661000 [Oryza sativa Japonica Group]
 gi|215694601|dbj|BAG89792.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215701272|dbj|BAG92696.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 610

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 148/463 (31%), Positives = 241/463 (52%), Gaps = 42/463 (9%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +HA I K G+  +      L+  + K   L  A  +FDE P+R +  Y+ ++     +  
Sbjct: 25  MHARILKEGLAHHPPNPAALVSAYAKSRLLPDALHLFDETPRRDIYIYSSLLTAVSHSAS 84

Query: 127 VEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
            E +L ++R ++S+    PD +  S +       RS     R LGR +HA  +      D
Sbjct: 85  PELALPILRCMLSADALHPDHFVISSVASVFARLRS-----RRLGRQLHAHFVVSPYNGD 139

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
           DV+ ++LVD Y K G     R VFD M  KN +  T+++SG+ S G  E+A ++FR    
Sbjct: 140 DVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYASNGRSEEALQLFRSMPG 199

Query: 246 KDIVVYNAMIEGY----------SISIETARKALEV------------------------ 271
           +++  + A+I G            + +E  R  + +                        
Sbjct: 200 RNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSIVIGGSADLAAFVLGRQ 259

Query: 272 -HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
            H   ++  F  ++ +G+AL+DMY+KC  I  AR VF+ +  ++V +WT+M+ G  ++G 
Sbjct: 260 LHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEGITFRDVISWTTMVVGEAQHGR 319

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
             +AL L+  M     +PN VTF+G + AC HAGLV KGR++FESM+ +Y + P+++HY 
Sbjct: 320 AEEALALYDRMVLAGAKPNEVTFVGLIYACSHAGLVQKGRQLFESMKNEYGITPRLQHYT 379

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
           C +DLL R+G L +A + +  MP +P+   W ALLS+C  + D EM    ++++ +L   
Sbjct: 380 CYLDLLSRSGHLLEAEELMTTMPYEPDEATWGALLSACTKYKDAEMCIRISDKLLELRPK 439

Query: 451 DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           D    Y+ LSN  A  GKWDSV ++R+ M    + K+ G SW+
Sbjct: 440 D-SSTYILLSNVYAVNGKWDSVAKVRKCMIGLEIRKEPGYSWI 481



 Score = 70.9 bits (172), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/334 (21%), Positives = 135/334 (40%), Gaps = 77/334 (23%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HAH   +    +  +   L+ ++ KCG+     ++FD +  +    +  +++GY  
Sbjct: 124 GRQLHAHFVVSPYNGDDVVKSSLVDMYCKCGSPDDGRKVFDSMSAKNSVVWTALVSGYAS 183

Query: 124 NGQVEESLSLVRK---------------LVSSGE-----------RPDG------YTFSM 151
           NG+ EE+L L R                LV++GE           R DG      +  S+
Sbjct: 184 NGRSEEALQLFRSMPGRNLFAWTALISGLVNTGESVGAVELFVEMRRDGVRIDDAFVLSI 243

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           ++  S    + V     LGR +H   ++    ++ ++  AL+D Y K      AR VF+ 
Sbjct: 244 VIGGSADLAAFV-----LGRQLHGSTMRLGFLSNMIVGNALIDMYSKCSDILSAREVFEG 298

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV 271
           +  ++VI  T+M+ G    G  E+A           + +Y+ M+   +   E     L  
Sbjct: 299 ITFRDVISWTTMVVGEAQHGRAEEA-----------LALYDRMVLAGAKPNEVTFVGLIY 347

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT-----WTSMIDGYG 326
            C                     +  G +   R++F+ M+ +   T     +T  +D   
Sbjct: 348 AC---------------------SHAGLVQKGRQLFESMKNEYGITPRLQHYTCYLDLLS 386

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           ++G+  +A EL   M     +P+  T+   LSAC
Sbjct: 387 RSGHLLEAEELMTTMP---YEPDEATWGALLSAC 417


>gi|224141809|ref|XP_002324255.1| predicted protein [Populus trichocarpa]
 gi|222865689|gb|EEF02820.1| predicted protein [Populus trichocarpa]
          Length = 547

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 158/468 (33%), Positives = 249/468 (53%), Gaps = 47/468 (10%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           IHAH+ K  +  ++ +  K++ +  K   L YA  +F ++ +     YN MI  +  N  
Sbjct: 33  IHAHVIKYSLSQSSFLVTKMVDVCDKTEDLGYASLLFKQVKEPNGYLYNAMIRAHTHNKV 92

Query: 127 VEESLSLVRKLVSSGER-------PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
              ++   ++++   +        PD +TF  ++K+   C   V    NLG+ VHA + K
Sbjct: 93  YALAILFYKEMLRLKDPESENPIFPDRFTFPFVIKS---CSGLVCY--NLGKQVHAHLCK 147

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
              K++  +  AL+D Y K      A  VFD M+E++ I   S+ISG +  G +  A  +
Sbjct: 148 FGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIISGHVGVGQMRKAGAL 207

Query: 240 FRKTVEKDIVVYNAMIEGYS------------------------ISIETARKA------L 269
           F     + IV + AMI GY+                        ISI +   A      L
Sbjct: 208 FDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEISIISVLPACAQLGAL 267

Query: 270 EV----HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
           EV    H    +N       + +AL++MY+KCG I  A ++FD M + +V +W++MI G 
Sbjct: 268 EVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQLFDQMSKGDVISWSTMIGGL 327

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
             +G   +A+ELF  M++  ++PN +TFLG LSAC HAG  ++G   F+SM +DY ++P+
Sbjct: 328 ANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFWNEGLAYFDSMSKDYHIEPE 387

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIF 445
           +EHY C+VD+LGRAG L QAL  + +MP KP+S +W +LLSSCR H ++++A IA   + 
Sbjct: 388 VEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLSSCRTHSNLDIAIIAMEHLE 447

Query: 446 KLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           +L  +D  G YV LSN  A   KWD V+ +R+ +K + + K  G S +
Sbjct: 448 ELEPDD-TGNYVLLSNIYADLAKWDGVSRMRKLIKSKSMKKTPGSSLI 494



 Score = 78.6 bits (192), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 83/372 (22%), Positives = 155/372 (41%), Gaps = 44/372 (11%)

Query: 2   PNLSRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTAT--SLPSALQHYINSD 59
           PN     + + + THN+ Y L         +L++ +S  NP+     + P  ++      
Sbjct: 75  PNGYLYNAMIRAHTHNKVYALAILFYKEMLRLKDPES-ENPIFPDRFTFPFVIKSCSGLV 133

Query: 60  TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKC-------------------------- 93
               G ++HAH+ K G K N  +   L+ ++ KC                          
Sbjct: 134 CYNLGKQVHAHLCKFGPKSNITMENALIDMYTKCASLLDAHKVFDGMVERDAISWNSIIS 193

Query: 94  -----GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYT 148
                G ++ AG +FD +P RT+ ++  MI+GY + G   ++L + R++   G  PD  +
Sbjct: 194 GHVGVGQMRKAGALFDLMPYRTIVSWTAMISGYTRLGSYADALYVFRQMQIVGVEPDEIS 253

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIV 208
              +L A  C +        +G+ +H    +  +     +  AL++ Y K G    A  +
Sbjct: 254 IISVLPA--CAQLGA---LEVGKWIHMYCDRNGLLRKTSICNALMEMYSKCGCIGQAYQL 308

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETA--- 265
           FD M + +VI  ++MI G  + G   +A E+F++  +  I        G   +   A   
Sbjct: 309 FDQMSKGDVISWSTMIGGLANHGKAREAIELFKRMKKAKIEPNGITFLGLLSACAHAGFW 368

Query: 266 RKALEVHCQLIKNVFFE-DVKLGSALVDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMID 323
            + L     + K+   E +V+    LVD+  + G++  A  V + M  K +   W S++ 
Sbjct: 369 NEGLAYFDSMSKDYHIEPEVEHYGCLVDILGRAGRLSQALDVIEKMPMKPDSKIWGSLLS 428

Query: 324 GYGKNGNPNQAL 335
               + N + A+
Sbjct: 429 SCRTHSNLDIAI 440


>gi|49333376|gb|AAT64016.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 148/461 (32%), Positives = 247/461 (53%), Gaps = 50/461 (10%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
            ++ S L    NS T   G  +H+   K+  +   N S  LL ++ KCG L  A ++F++
Sbjct: 252 ATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEK 311

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           + +R + ++  MIAGY ++G+ + ++ L++++   G + D    + IL A  C RS    
Sbjct: 312 MGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHA--CARSG--- 366

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
             + G+ VH  I   +++++  +  AL+D Y K G                         
Sbjct: 367 SLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGS------------------------ 402

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS-------------ISIETARKALEVH 272
                  +E A  +F   V KDI+ +N MI                  S+    +  E+H
Sbjct: 403 -------MEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIH 455

Query: 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPN 332
             +++N +  D  + +ALVD+Y KCG +  AR +FD +  K++ +WT MI GYG +G  N
Sbjct: 456 GYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGN 515

Query: 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACM 392
           +A+  F  M++  ++P+ V+F+  L AC H+GL+++G   F  M+ D++++PK+EHYACM
Sbjct: 516 EAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACM 575

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR 452
           VDLL R G+L +A +F+  +P  P++ +W ALL  CR + D+E+A   A  +F+L   + 
Sbjct: 576 VDLLSRTGNLSKAYEFIETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEP-EN 634

Query: 453 PGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            G YV L+N  A A KW+ V  LREK+  +G+ K+ GCSW+
Sbjct: 635 SGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWI 675



 Score =  106 bits (265), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 101/424 (23%), Positives = 186/424 (43%), Gaps = 86/424 (20%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G K+H+ I    V  +  + +KL+  +  CG LK   ++FD + ++ +  +N+M++ Y K
Sbjct: 118 GKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAK 177

Query: 124 NGQVEESLSLVRKLVS---SGERPD----------------------GYT---------- 148
            G  +ES+ L + +V     G+RP+                      GY           
Sbjct: 178 IGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLG 237

Query: 149 -------------FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDS 195
                         + I+     C ++  L  +LG+ VH+  +K   +        L+D 
Sbjct: 238 IYKQMMYLGIDVDLATIISVLVGCANSGTL--SLGKAVHSLAIKSSFERRINFSNTLLDM 295

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFM----SQGFVEDAEEIFRKTVEKDIVVY 251
           Y K G    A  VF+ M E+NV+  TSMI+G+     S G ++  +++ ++ V+ D+V  
Sbjct: 296 YSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAI 355

Query: 252 NAMIE--GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309
            +++     S S++  +   +VH  +  N    ++ + +AL+DMYAKCG ++ A  VF  
Sbjct: 356 TSILHACARSGSLDNGK---DVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFST 412

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKG 369
           M  K++ +W +MI                       ++P+  T    L AC     +++G
Sbjct: 413 MVVKDIISWNTMIGE---------------------LKPDSRTMACVLPACASLSALERG 451

Query: 370 REIFESMERD-YSMKPKMEHYA-CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
           +EI   + R+ YS      H A  +VDL  + G L  A + + +M    +   W  +++ 
Sbjct: 452 KEIHGYILRNGYSSD---RHVANALVDLYVKCGVLGLA-RLLFDMIPSKDLVSWTVMIAG 507

Query: 428 CRLH 431
             +H
Sbjct: 508 YGMH 511



 Score = 63.5 bits (153), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/253 (21%), Positives = 102/253 (40%), Gaps = 56/253 (22%)

Query: 227 FMSQGFVEDAEEIFR--KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDV 284
           F   G +E+A E+    K  E +   Y+++++     +++     +VH  +  N    D 
Sbjct: 76  FCQLGDLENAMELICMCKKSELETKTYSSVLQ-LCAGLKSFTDGKKVHSIIKSNSVGVDE 134

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVF---------------------------- 316
            LG  LV  YA CG + + RRVFD M++KNV+                            
Sbjct: 135 ALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAKIGDFKESICLFKIMVEK 194

Query: 317 -----------------------TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
                                  +W SMI GY  NG   + L ++  M    +  +  T 
Sbjct: 195 GIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLGIYKQMMYLGIDVDLATI 254

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           +  L  C ++G +  G+ +  S+    S + ++     ++D+  + G L+ AL+   +M 
Sbjct: 255 ISVLVGCANSGTLSLGKAV-HSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKMG 313

Query: 414 EKPNSDVWAALLS 426
           E+ N   W ++++
Sbjct: 314 ER-NVVSWTSMIA 325


>gi|356521639|ref|XP_003529461.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Glycine max]
          Length = 699

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 160/439 (36%), Positives = 242/439 (55%), Gaps = 17/439 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ----RTLSAYNYMIA 119
           G  +H  + K G+  N+ ++  LL +++KCG ++ A ++FDE       R L ++  MI 
Sbjct: 253 GKWVHGFVIKNGICVNSYLTTSLLNMYVKCGNIQDACKVFDESSSSSYDRDLVSWTAMIV 312

Query: 120 GYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           GY + G    +L L +    SG  P+  T S +L +     ++V     +G+++H   +K
Sbjct: 313 GYSQRGYPHLALELFKDKKWSGILPNSVTVSSLLSSCAQLGNSV-----MGKLLHGLAVK 367

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
           C +  D  +  ALVD Y K G  S AR VF+ MLEK+V+   S+ISGF+  G   +A  +
Sbjct: 368 CGLD-DHPVRNALVDMYAKCGVVSDARCVFEAMLEKDVVSWNSIISGFVQSGEAYEALNL 426

Query: 240 FRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKN-VFFEDVKLGSALVDMY 294
           FR+        D V    ++   + S+        VH   +K+ +    + +G+AL++ Y
Sbjct: 427 FRRMGLELFSPDAVTVVGILSACA-SLGMLHLGCSVHGLALKDGLVVSSIYVGTALLNFY 485

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           AKCG    AR VFD M +KN  TW +MI GYG  G+ N +L LF  M E  V+PN V F 
Sbjct: 486 AKCGDARAARMVFDSMGEKNAVTWGAMIGGYGMQGDGNGSLTLFRDMLEELVEPNEVVFT 545

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             L+AC H+G+V +G  +F  M  + +  P M+HYACMVD+L RAG+LE+AL F+  MP 
Sbjct: 546 TILAACSHSGMVGEGSRLFNLMCGELNFVPSMKHYACMVDMLARAGNLEEALDFIERMPV 605

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
           +P+  V+ A L  C LH   E+   A  ++ +L+  D    YV +SN  A+ G+W  V +
Sbjct: 606 QPSVSVFGAFLHGCGLHSRFELGGAAIKKMLELHP-DEACYYVLVSNLYASDGRWGMVKQ 664

Query: 475 LREKMKLRGVLKDTGCSWV 493
           +RE +K RG+ K  GCS V
Sbjct: 665 VREMIKQRGLNKVPGCSSV 683



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 172/374 (45%), Gaps = 27/374 (7%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +HA     G+  +  +S KLL L+   G L++A ++F+ LP R L  +  MI  Y  N  
Sbjct: 52  LHASFLIHGLTNDLLLSTKLLSLYASFGQLRHARKIFNHLPTRDLYCFKVMIRAYFLNDT 111

Query: 127 VEESLSLVRKL-VSSGERPDGYT-FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
               +SL R + +S    P  Y  FS++ K+    R    L      + H   +K  + +
Sbjct: 112 PSGVVSLYRLMRLSLHPTPHDYVLFSIVFKSCAESRDFQTLT-----ITHCHFVK-SLPS 165

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEK-NVICSTSMISGFMSQGFVEDAEEIFRKT 243
           D  + T LVD+Y K  +   A   FD + E  +V+  TSMI  ++      +   +F + 
Sbjct: 166 DSFVLTCLVDAYAKFARVDEATRAFDEIHENDDVVSWTSMIVAYVQNDCAREGLTLFNRM 225

Query: 244 VEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            E   V  N    G  +S  T    L     VH  +IKN    +  L ++L++MY KCG 
Sbjct: 226 REA-FVDGNEFTVGSLVSACTKLNWLHQGKWVHGFVIKNGICVNSYLTTSLLNMYVKCGN 284

Query: 300 IDDARRVFDHMQQ----KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           I DA +VFD        +++ +WT+MI GY + G P+ ALELF   +   + PN VT   
Sbjct: 285 IQDACKVFDESSSSSYDRDLVSWTAMIVGYSQRGYPHLALELFKDKKWSGILPNSVTVSS 344

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA---CMVDLLGRAGSLEQALKFVLEM 412
            LS+C        G  +   +    ++K  ++ +     +VD+  + G +  A + V E 
Sbjct: 345 LLSSCAQL-----GNSVMGKLLHGLAVKCGLDDHPVRNALVDMYAKCGVVSDA-RCVFEA 398

Query: 413 PEKPNSDVWAALLS 426
             + +   W +++S
Sbjct: 399 MLEKDVVSWNSIIS 412



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/209 (25%), Positives = 98/209 (46%), Gaps = 9/209 (4%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           + +HA  L   +  D +L T L+  Y   G+  +AR +F+ +  +++ C   MI  +   
Sbjct: 50  KTLHASFLIHGLTNDLLLSTKLLSLYASFGQLRHARKIFNHLPTRDLYCFKVMIRAYFLN 109

Query: 231 GFVEDAEEIFR------KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDV 284
                   ++R           D V+++ + +  + S +     +  HC  +K++  +  
Sbjct: 110 DTPSGVVSLYRLMRLSLHPTPHDYVLFSIVFKSCAESRDFQTLTI-THCHFVKSLPSDSF 168

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
            L + LVD YAK  ++D+A R FD + +  +V +WTSMI  Y +N    + L LF  M+E
Sbjct: 169 VL-TCLVDAYAKFARVDEATRAFDEIHENDDVVSWTSMIVAYVQNDCAREGLTLFNRMRE 227

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREI 372
             V  N  T    +SAC     + +G+ +
Sbjct: 228 AFVDGNEFTVGSLVSACTKLNWLHQGKWV 256


>gi|449480302|ref|XP_004155856.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 654

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 150/437 (34%), Positives = 245/437 (56%), Gaps = 16/437 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H  + K  +  +  I   LL ++  CG LK A  +F+ +  R    +  MI+GY+K
Sbjct: 98  GKVLHGQVVKYMLHSDLYIETTLLNMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMK 157

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N    E+L L +K+   G  PD  T + ++ A   C     L   +G  +H+ I + D+K
Sbjct: 158 NHCPNEALLLYKKMEEDGFSPDEVTMATLVSA---CAELKDL--GVGMKLHSHIREMDMK 212

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
              VL +ALV+ Y K G    AR VFD + +K+V   +++I G++      +A ++FR+ 
Sbjct: 213 ICAVLGSALVNMYAKCGDLKTARQVFDQLSDKDVYAWSALIFGYVKNNRSTEALQLFREV 272

Query: 244 -----VEKDIVVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
                +  + V   A+I   +    +ET R    VH  + +      V L ++L+DM++K
Sbjct: 273 AGGSNMRPNEVTILAVISACAQLGDLETGR---WVHDYITRTQKGHSVSLNNSLIDMFSK 329

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG ID A+R+FD M  K++ +W SM++G   +G   +AL  F +MQ   +QP+ +TF+G 
Sbjct: 330 CGDIDAAKRIFDSMSYKDLISWNSMVNGLALHGLGREALAQFHLMQTTDLQPDEITFIGV 389

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           L+AC HAGLV +G+++F  +E  Y ++ K EHY CMVDLL RAG L +A +F+  MP +P
Sbjct: 390 LTACSHAGLVQEGKKLFYEIEALYGVRLKSEHYGCMVDLLCRAGLLAEAREFIRVMPLQP 449

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
           +  +W ++L +CR+++++E+   AA  + +L   +  G Y+ LSN  A    W+ V ++R
Sbjct: 450 DGAIWGSMLGACRVYNNLELGEEAARCLLELEPTN-DGVYILLSNIYARRKMWNEVKKVR 508

Query: 477 EKMKLRGVLKDTGCSWV 493
           E M  +G+ K  GCS V
Sbjct: 509 ELMNEKGIQKTPGCSSV 525



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 183/370 (49%), Gaps = 33/370 (8%)

Query: 77  KPNTNISIKLLILHLKCGALK--YAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESL-SL 133
           KP+ N   KL+   L  G+L   YA  +F       +  +N M+  ++ +     +L S 
Sbjct: 10  KPSLN---KLIAHVLSMGSLGVGYAYSVFAHTRVLDVLTWNSMLRAFVNSNMPRRALQSY 66

Query: 134 VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALV 193
              L  S   PD +TF  +LK        + L   +G+++H Q++K  + +D  + T L+
Sbjct: 67  TEMLERSRNVPDRFTFPSLLKGCA-----LLLEFKVGKVLHGQVVKYMLHSDLYIETTLL 121

Query: 194 DSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNA 253
           + Y   G    AR +F+ M  +N +  TSMISG+M      +A  +++K +E+D    + 
Sbjct: 122 NMYAACGDLKSARFLFERMGHRNKVVWTSMISGYMKNHCPNEALLLYKK-MEEDGFSPDE 180

Query: 254 MIEGYSISIETARKALEVHCQLIKNVFFEDVK----LGSALVDMYAKCGKIDDARRVFDH 309
           +     +S     K L V  +L  ++   D+K    LGSALV+MYAKCG +  AR+VFD 
Sbjct: 181 VTMATLVSACAELKDLGVGMKLHSHIREMDMKICAVLGSALVNMYAKCGDLKTARQVFDQ 240

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC----VQPNYVTFLGALSACGHAGL 365
           +  K+V+ W+++I GY KN    +AL+LF   +E      ++PN VT L  +SAC   G 
Sbjct: 241 LSDKDVYAWSALIFGYVKNNRSTEALQLF---REVAGGSNMRPNEVTILAVISACAQLGD 297

Query: 366 VDKGREIFESMERDYSMKPKMEHYA----CMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
           ++ GR +      DY  + +  H       ++D+  + G ++ A +    M  K +   W
Sbjct: 298 LETGRWV-----HDYITRTQKGHSVSLNNSLIDMFSKCGDIDAAKRIFDSMSYK-DLISW 351

Query: 422 AALLSSCRLH 431
            ++++   LH
Sbjct: 352 NSMVNGLALH 361


>gi|15231970|ref|NP_187494.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207322|sp|Q9SR82.1|PP219_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g08820
 gi|6403507|gb|AAF07847.1|AC010871_23 unknown protein [Arabidopsis thaliana]
 gi|12322725|gb|AAG51349.1|AC012562_10 unknown protein; 90102-88045 [Arabidopsis thaliana]
 gi|332641162|gb|AEE74683.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 685

 Score =  259 bits (661), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 145/457 (31%), Positives = 243/457 (53%), Gaps = 9/457 (1%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L   + P  L+    + +   G+ +H+ + K G   +      LL ++   G L  A ++
Sbjct: 109 LHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKL 168

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           FDE+P R++  +  + +GY  +G+  E++ L +K+V  G +PD Y    +L A  C    
Sbjct: 169 FDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSA--CVHVG 226

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
                + G  +   + + +++ +  + T LV+ Y K GK   AR VFD M+EK+++  ++
Sbjct: 227 ---DLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWST 283

Query: 223 MISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIET--ARKALEVHCQLI-KNV 279
           MI G+ S  F ++  E+F + +++++      I G+  S  +  A    E    LI ++ 
Sbjct: 284 MIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHE 343

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
           F  ++ + +AL+DMYAKCG +     VF  M++K++    + I G  KNG+   +  +F 
Sbjct: 344 FLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFG 403

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
             ++  + P+  TFLG L  C HAGL+  G   F ++   Y++K  +EHY CMVDL GRA
Sbjct: 404 QTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRA 463

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVAL 459
           G L+ A + + +MP +PN+ VW ALLS CRL  D ++A     E+  L   +  G YV L
Sbjct: 464 GMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWN-AGNYVQL 522

Query: 460 SNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
           SN  +  G+WD   E+R+ M  +G+ K  G SW+  E
Sbjct: 523 SNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELE 559



 Score =  147 bits (372), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 101/359 (28%), Positives = 179/359 (49%), Gaps = 21/359 (5%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IH  +    +  +T +   LL   L     KY+  +F       +  YN +I G++ N 
Sbjct: 31  QIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVNNH 90

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              E+L L   +   G    G+TF ++LKA  C R++    R LG  +H+ ++KC    D
Sbjct: 91  LFHETLDLFLSIRKHGLYLHGFTFPLVLKA--CTRAS---SRKLGIDLHSLVVKCGFNHD 145

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
               T+L+  Y   G+ + A  +FD + +++V+  T++ SG+ + G   +A ++F+K VE
Sbjct: 146 VAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVE 205

Query: 246 KDI---------VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
             +         V+   +  G   S E   K +E   ++ KN F       + LV++YAK
Sbjct: 206 MGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYME-EMEMQKNSFVR-----TTLVNLYAK 259

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CGK++ AR VFD M +K++ TW++MI GY  N  P + +ELF  M +  ++P+  + +G 
Sbjct: 260 CGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGF 319

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
           LS+C   G +D G      ++R +     +     ++D+  + G++ +  +   EM EK
Sbjct: 320 LSSCASLGALDLGEWGISLIDR-HEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEK 377



 Score = 99.4 bits (246), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/253 (24%), Positives = 125/253 (49%), Gaps = 14/253 (5%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           + +H  ++   +  D  L   L+   +   +T Y+ ++F      N+    S+I+GF++ 
Sbjct: 30  KQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVNN 89

Query: 231 GFVEDAEEIFRKTVEKDIVVYNAMIEGYSISI-------ETARK-ALEVHCQLIKNVFFE 282
               +  ++F       I  +   + G++  +        ++RK  +++H  ++K  F  
Sbjct: 90  HLFHETLDLFLS-----IRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNH 144

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           DV   ++L+ +Y+  G+++DA ++FD +  ++V TWT++  GY  +G   +A++LF  M 
Sbjct: 145 DVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMV 204

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
           E  V+P+    +  LSAC H G +D G  I + ME +  M+        +V+L  + G +
Sbjct: 205 EMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYME-EMEMQKNSFVRTTLVNLYAKCGKM 263

Query: 403 EQALKFVLEMPEK 415
           E+A      M EK
Sbjct: 264 EKARSVFDSMVEK 276


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  258 bits (660), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 137/454 (30%), Positives = 249/454 (54%), Gaps = 10/454 (2%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L + +L S L         F G  +H +  KTG    T+++  LL ++  C   +   ++
Sbjct: 295 LDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKI 354

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           F  + Q+ + ++  MI  Y + G  ++   L +++   G RPD +  +  L A      N
Sbjct: 355 FRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFA---GN 411

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
             L    G+ VH   ++  ++    +  AL++ YVK G    A+++FD ++ K++I   +
Sbjct: 412 ELLKH--GKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNT 469

Query: 223 MISGFMSQGFVEDAEEIFRK---TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
           +I G+       +A  +F +    +  + V    ++   + S+ +  +  E+H   ++  
Sbjct: 470 LIGGYSRNNLANEAFSLFTEMLLQLRPNAVTMTCILPA-AASLSSLERGREMHAYALRRG 528

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
           + ED  + +AL+DMY KCG +  ARR+FD +  KN+ +WT M+ GYG +G    A+ LF 
Sbjct: 529 YLEDDFVANALIDMYVKCGALLLARRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFE 588

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
            M+   + P+  +F   L AC H+GL D+G   F++M +++ ++P+++HY CMVDLL   
Sbjct: 589 QMRVSGIAPDAASFSAILYACSHSGLRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINT 648

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVAL 459
           G+L++A +F+  MP +P+S +W +LL  CR+H +V++A   A  +F+L   +  G YV L
Sbjct: 649 GNLKEAYEFIDSMPIEPDSSIWVSLLRGCRIHRNVKLAEEVAERVFELEPEN-TGYYVLL 707

Query: 460 SNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           +N  A A +W++V +L+ K+  RG+ ++TGCSW+
Sbjct: 708 ANIYAEAERWEAVRKLKNKIGGRGLRENTGCSWI 741



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 118/414 (28%), Positives = 196/414 (47%), Gaps = 26/414 (6%)

Query: 85  KLLILHLKCGALKYAGQMFDELPQRT-LSAYNYMIAGYLKNGQVEESLSLVRKLVSSGER 143
           KL++++LKCG L+ A ++FDE+PQ + +  +  +++GY K G + E + L RK+   G R
Sbjct: 134 KLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVR 193

Query: 144 PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTS 203
           PD YT S +LK    C + +    + G +VH  + K    +   +  AL+  Y K  +T 
Sbjct: 194 PDAYTISCVLK----CIAGLGSIED-GEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTK 248

Query: 204 YARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-RKTVEKDIVVYNAMIEGYSISI 262
            A +VFD M  ++VI   SMISG  S G  + A E+F R  +E + +    ++       
Sbjct: 249 DAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACA 308

Query: 263 ETARKALE--VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
           E     L   VH   +K  F     L + L+DMY+ C       ++F +M QKNV +WT+
Sbjct: 309 ELHLLFLGRVVHGYSVKTGFISQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTA 368

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
           MI  Y + G  ++   LF  M     +P+      AL A     L+  G+ +       Y
Sbjct: 369 MITSYTRAGLYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSV-----HGY 423

Query: 381 SMKPKMEHYA----CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEM 436
           +++  ME        ++++  + G++E+A K + +     +   W  L+     +    +
Sbjct: 424 AIRNGMEKVLAVTNALMEMYVKCGNMEEA-KLIFDGVVSKDMISWNTLIGG---YSRNNL 479

Query: 437 ANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL---RGVLKD 487
           AN A +   ++    RP A V ++  L AA    S+   RE       RG L+D
Sbjct: 480 ANEAFSLFTEMLLQLRPNA-VTMTCILPAAASLSSLERGREMHAYALRRGYLED 532



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 93/372 (25%), Positives = 173/372 (46%), Gaps = 13/372 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H  + K G      +   L+  + K    K A  +FD +P R + ++N MI+G   
Sbjct: 215 GEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTS 274

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  ++++ L  ++   GE  D  T   +L A  C   ++     LGR+VH   +K    
Sbjct: 275 NGLYDKAIELFVRMWLEGEELDSATLLSVLPA--CAELHLLF---LGRVVHGYSVKTGFI 329

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +   L   L+D Y           +F  M++KNV+  T+MI+ +   G  +    +F++ 
Sbjct: 330 SQTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEM 389

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
                  DI    + +  ++ + E  +    VH   I+N   + + + +AL++MY KCG 
Sbjct: 390 GLEGTRPDIFAITSALHAFAGN-ELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGN 448

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +++A+ +FD +  K++ +W ++I GY +N   N+A  LF  M    ++PN VT    L A
Sbjct: 449 MEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEML-LQLRPNAVTMTCILPA 507

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
                 +++GRE+     R   ++      A ++D+  + G+L  A +    +  K N  
Sbjct: 508 AASLSSLERGREMHAYALRRGYLEDDFVANA-LIDMYVKCGALLLARRLFDRLSNK-NLI 565

Query: 420 VWAALLSSCRLH 431
            W  +++   +H
Sbjct: 566 SWTIMVAGYGMH 577



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 102/381 (26%), Positives = 161/381 (42%), Gaps = 50/381 (13%)

Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR 171
           S  N  I    ++G +EE+L L   L S G   D  ++  +L+  +  RS +   +    
Sbjct: 62  SDVNLHIQRLCRSGDLEEALGL---LGSDG--VDDRSYGAVLQLCSEVRS-LEGGKRAHF 115

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE-KNVICSTSMISGFMSQ 230
           +V A  L  D   D+VL   LV  Y+K G    AR VFD M +  +V   T+++SG+   
Sbjct: 116 LVRASSLGRD-GMDNVLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKA 174

Query: 231 GFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
           G + +   +FRK     V  D    + +++  +  + +      VH  L K  F     +
Sbjct: 175 GDLREGVLLFRKMHCCGVRPDAYTISCVLKCIA-GLGSIEDGEVVHGLLEKLGFGSQCAV 233

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
           G+AL+  YAK  +  DA  VFD M  ++V +W SMI G   NG  ++A+ELF  M     
Sbjct: 234 GNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGE 293

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
           + +  T L  L AC    L+  GR +       YS+K        + ++L          
Sbjct: 294 ELDSATLLSVLPACAELHLLFLGRVV-----HGYSVKTGFISQTSLANVL---------- 338

Query: 407 KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
              L+M    N   W                  + N+IF+        ++ A+  +   A
Sbjct: 339 ---LDM--YSNCSDWR-----------------STNKIFRNMVQKNVVSWTAMITSYTRA 376

Query: 467 GKWDSVTELREKMKLRGVLKD 487
           G +D V  L ++M L G   D
Sbjct: 377 GLYDKVAGLFQEMGLEGTRPD 397


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 152/461 (32%), Positives = 251/461 (54%), Gaps = 38/461 (8%)

Query: 64   GLKIHAHITKTG-VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
            G +IH +  + G +  N+ +   L+ ++  C   K    +FD + +RT++ +N ++AGY 
Sbjct: 553  GREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTVAVWNALLAGYA 612

Query: 123  KNGQVEESLSLVRKLVSSGER-PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            +N   +++L L  +++S  E  P+  TF+ +L A  C R  V   +     +H  I+K  
Sbjct: 613  RNEFDDQALRLFVEMISESEFCPNATTFASVLPA--CVRCKVFSDKE---GIHGYIVKRG 667

Query: 182  VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----E 237
               D  +  AL+D Y + G+   ++ +F  M +++++   +MI+G +  G  +DA     
Sbjct: 668  FGKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYDDALNLLH 727

Query: 238  EIFRKTVEK------------------DIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
            E+ R+  E                   + V    ++ G + ++    K  E+H   +K  
Sbjct: 728  EMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPGCA-ALAALGKGKEIHAYAVKQK 786

Query: 280  FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
               DV +GSALVDMYAKCG ++ A RVFD M  +NV TW  +I  YG +G   +ALELF 
Sbjct: 787  LAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMHGKGEEALELFR 846

Query: 340  MM------QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMV 393
            +M          ++PN VT++   +AC H+G+VD+G  +F +M+  + ++P+ +HYAC+V
Sbjct: 847  IMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGVEPRGDHYACLV 906

Query: 394  DLLGRAGSLEQALKFVLEMPEKPNS-DVWAALLSSCRLHDDVEMANIAANEIFKLNANDR 452
            DLLGR+G +++A + +  MP   N  D W++LL +CR+H  VE   IAA  +F L  N  
Sbjct: 907  DLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAAKHLFVLEPN-V 965

Query: 453  PGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
               YV +SN  ++AG WD    +R+KMK  GV K+ GCSW+
Sbjct: 966  ASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWI 1006



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 118/420 (28%), Positives = 194/420 (46%), Gaps = 20/420 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISI--KLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           G +IHAH+ K G  P +++++   L+ ++ KCG L  A Q+FD++P R   ++N MIA  
Sbjct: 349 GKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATL 408

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            +  + E SL L R ++S    P  +T   +  A +  R  V     LG+ VHA  L+  
Sbjct: 409 CRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGV----RLGKQVHAYTLR-- 462

Query: 182 VKADDVLYT--ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA--- 236
              D   YT  ALV  Y + G+ + A+ +F +   K+++   ++IS        E+A   
Sbjct: 463 -NGDLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMY 521

Query: 237 -EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV-FFEDVKLGSALVDMY 294
              +    V  D V   +++   S  +E  R   E+HC  ++N    E+  +G+ALVDMY
Sbjct: 522 VYLMIVDGVRPDGVTLASVLPACS-QLERLRIGREIHCYALRNGDLIENSFVGTALVDMY 580

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC-MMQECCVQPNYVTF 353
             C +    R VFD + ++ V  W +++ GY +N   +QAL LF  M+ E    PN  TF
Sbjct: 581 CNCKQPKKGRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTF 640

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
              L AC    +      I   + +    K K    A M D+  R G +E + K +    
Sbjct: 641 ASVLPACVRCKVFSDKEGIHGYIVKRGFGKDKYVQNALM-DMYSRMGRVEIS-KTIFGRM 698

Query: 414 EKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473
            K +   W  +++ C +    + A    +E+ +    D    +V   +      K +SVT
Sbjct: 699 NKRDIVSWNTMITGCIVCGRYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVT 758



 Score = 72.4 bits (176), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/236 (25%), Positives = 109/236 (46%), Gaps = 16/236 (6%)

Query: 145 DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTA--LVDSYVKGGKT 202
           D + F  +LKA+            LG+ +HA + K        +  A  LV+ Y K G  
Sbjct: 329 DNFAFPAVLKAAAAVHDLC-----LGKQIHAHVFKFGHAPPSSVAVANSLVNMYGKCGDL 383

Query: 203 SYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISI 262
           + AR VFD + +++ +   SMI+        E +  +FR  + +++   +  +   + + 
Sbjct: 384 TAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFRLMLSENVDPTSFTLVSVAHAC 443

Query: 263 ETARKAL----EVHCQLIKNVFFEDVKL--GSALVDMYAKCGKIDDARRVFDHMQQKNVF 316
              R  +    +VH   ++N    D++    +ALV MYA+ G+++DA+ +F     K++ 
Sbjct: 444 SHVRGGVRLGKQVHAYTLRN---GDLRTYTNNALVTMYARLGRVNDAKALFGVFDGKDLV 500

Query: 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           +W ++I    +N    +AL    +M    V+P+ VT    L AC     +  GREI
Sbjct: 501 SWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVLPACSQLERLRIGREI 556


>gi|224057446|ref|XP_002299231.1| predicted protein [Populus trichocarpa]
 gi|222846489|gb|EEE84036.1| predicted protein [Populus trichocarpa]
          Length = 668

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 152/465 (32%), Positives = 249/465 (53%), Gaps = 42/465 (9%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           + G +I   + K G   +  +   ++ + +  G    A ++FDE   R L ++N +I GY
Sbjct: 171 YMGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCVRDLVSWNSLINGY 230

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           ++  Q  E++ + +++++   +PD  T  MI   S C +        LGR +H  I +  
Sbjct: 231 VRRRQPREAMGIYQQMITEHVKPDEVT--MIGVVSACAQLE---SLKLGREIHRYIEESG 285

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +     L  AL+D YVK G     +++FD M +K V+  T+MI G+   G ++ A ++F 
Sbjct: 286 LNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGLLDMAGKLFH 345

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEV-----------------HC----------- 273
              EK++V +NAMI G  +    + +ALE+                 HC           
Sbjct: 346 DMPEKNVVAWNAMI-GSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSACSQLGALD 404

Query: 274 -------QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
                   + K+    DV LG+AL+DMYAKCG +  A +VF+ M ++N  TWT++I G  
Sbjct: 405 TGMWTHNYIKKHNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRRNSLTWTAIIGGLA 464

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM 386
             GN N A+  F  M +  + P+ +TFLG L+AC H GLV++GR+ F+ M+  +++ P+ 
Sbjct: 465 LYGNVNDAIFYFSKMIDSGLMPDEITFLGVLTACCHGGLVEEGRKYFDQMKSRFNLSPQP 524

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446
           +HY+CMV+LLGRAG LE+A + +  MP + ++ VW AL  +C +H ++ +   AA+++  
Sbjct: 525 KHYSCMVNLLGRAGLLEEAEELIKTMPMEADAMVWGALFFACGIHRNLLIGERAASKLLD 584

Query: 447 LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
           L+ +D  G YV L+N    AGKW+    +R+ M  RGV K  G S
Sbjct: 585 LDPHD-SGIYVLLANMYREAGKWEEAQNIRKMMMERGVEKTPGSS 628



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 188/378 (49%), Gaps = 44/378 (11%)

Query: 96  LKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVS-SGERPDGYTFSMILK 154
           L Y  ++ + L    + ++N +I G +++   ++ L L +++++ +G RPD YT+S + K
Sbjct: 103 LDYCIKILNNLQNPNVFSWNAVIRGCVESENPQKGLVLYKRMLTRAGCRPDNYTYSFLFK 162

Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE 214
                 +N+ L   +G  +  Q+LK     D  LY  ++   V  G++  A  VFD    
Sbjct: 163 VC----ANLVLSY-MGFEILGQVLKMGFDKDMYLYNGIIHMLVSVGESGLAHKVFDEGCV 217

Query: 215 KNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALE 270
           ++++   S+I+G++ +    +A  I+++     V+ D V    ++   +  +E+ +   E
Sbjct: 218 RDLVSWNSLINGYVRRRQPREAMGIYQQMITEHVKPDEVTMIGVVSACA-QLESLKLGRE 276

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           +H  + ++     + L +AL+DMY KCG ++  + +FD+M++K V +WT+MI GY KNG 
Sbjct: 277 IHRYIEESGLNLKISLVNALMDMYVKCGDLEAGKVLFDNMRKKTVVSWTTMIVGYAKNGL 336

Query: 331 PN-------------------------------QALELFCMMQECCVQPNYVTFLGALSA 359
            +                               +ALELF  MQ   ++P+ VT L  LSA
Sbjct: 337 LDMAGKLFHDMPEKNVVAWNAMIGSCVQANLSFEALELFREMQWSNMKPDKVTMLHCLSA 396

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C   G +D G      +++ +++   +     ++D+  + G++ +AL+   EMP + NS 
Sbjct: 397 CSQLGALDTGMWTHNYIKK-HNLSLDVALGTALIDMYAKCGNMTKALQVFNEMPRR-NSL 454

Query: 420 VWAALLSSCRLHDDVEMA 437
            W A++    L+ +V  A
Sbjct: 455 TWTAIIGGLALYGNVNDA 472


>gi|359485688|ref|XP_002275048.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Vitis vinifera]
 gi|297739328|emb|CBI28979.3| unnamed protein product [Vitis vinifera]
          Length = 585

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 165/520 (31%), Positives = 263/520 (50%), Gaps = 53/520 (10%)

Query: 5   SRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPS-ALQHYI------- 56
           SR+  SV S T N +Y  +   Q   P     +++    T +S P  AL+ Y        
Sbjct: 47  SRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRRKGL 106

Query: 57  ---NSDTPFY------------GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQ 101
              N   PF             G  +     K G   +  +   L+ ++ +CG   +A  
Sbjct: 107 LGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARA 166

Query: 102 MFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV-----RKLVSSGERPDGYTFSMILKAS 156
           +FD   ++ L ++N M+ GY+  G++E + ++      R +VS     DGY         
Sbjct: 167 VFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYG-------- 218

Query: 157 TCCRSNVPLPRNLGRMVHAQILKCDVKADDVL-YTALVDSYVKGGKTSYARIVFDMMLEK 215
                     + +G +  A++    +   D++ + +++D Y K G+   AR +FD ML+K
Sbjct: 219 ----------KKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFDKMLQK 268

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE----V 271
           NVI  + MI G+      ++A  +FR+ + + I      + G ++S  +   AL+    +
Sbjct: 269 NVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVG-AVSACSQLGALDQGRWI 327

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
           H  + +N    D+ + +ALVDMY KCG  D+ARR+F+ M ++NV +W  MI G G NG  
Sbjct: 328 HLYMKRNRMLLDIVVQTALVDMYLKCGSRDEARRIFNSMPERNVVSWNVMIVGLGMNGFG 387

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC 391
            +ALE F  M+   +  + + FLG L AC HA LV +G  IF  M+  Y ++PK+EHY C
Sbjct: 388 KEALECFTQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGC 447

Query: 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451
           +VDLLGRAG L+Q    +  MP KPN+ +W +LL +CR+H +V +A I    + +L A+D
Sbjct: 448 LVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRIHQNVTLAEIVVERLAELKADD 507

Query: 452 RPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
             G YV +SN  A  G W+ +  +R+ MK R + KD G S
Sbjct: 508 -SGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIGRS 546



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 145/326 (44%), Gaps = 24/326 (7%)

Query: 173 VHAQILKCDVKADDVLYTALVDSYV-KGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
           +HAQ++  ++ +D    + L+DS V K    +YA +VF  + + N     +M+  +    
Sbjct: 30  IHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTESS 89

Query: 232 FVEDA----EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG 287
             E A     E+ RK +  D   Y  +++            L V  + +K  F  DV + 
Sbjct: 90  TPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGGL-VQGEAVKRGFGGDVFVV 148

Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347
           + L+ MY +CG+   AR VFD   +K++ +W SM+ GY   G    A  +F  M E    
Sbjct: 149 NGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPE---- 204

Query: 348 PNYVTFLGALSACGHA-GLVDKGREIFESM-ERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
            + V++   +   G   G V++ R  F+SM  RD      +  +  M+D   + G +E A
Sbjct: 205 RDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRD------LVSWNSMIDGYAKVGEMEVA 258

Query: 406 LKFVLEMPEKPNSDVWAALLSSCRLH-DDVEMANIAANEIFKLNANDRPGAYVALS--NT 462
            +   +M +K N   W+ ++     H D  E  N+    + +    DR     A+S  + 
Sbjct: 259 REIFDKMLQK-NVISWSIMIDGYAQHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQ 317

Query: 463 LAA--AGKWDSVTELREKMKLRGVLK 486
           L A   G+W  +   R +M L  V++
Sbjct: 318 LGALDQGRWIHLYMKRNRMLLDIVVQ 343



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 2/120 (1%)

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVD-MYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
           +T+ + L++H QLI      D    S L+D + +K   ++ A  VF  + Q N F   +M
Sbjct: 22  KTSSQILQIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTM 81

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG-HAGLVDKGREIFESMERDY 380
           +  Y ++  P +AL  +  M+   +  +  T+   L ACG   GL++ G    E+++R +
Sbjct: 82  VKCYTESSTPERALRFYAEMRRKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGF 141


>gi|357119550|ref|XP_003561500.1| PREDICTED: pentatricopeptide repeat-containing protein At4g37380,
           chloroplastic-like [Brachypodium distachyon]
          Length = 892

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 154/465 (33%), Positives = 244/465 (52%), Gaps = 49/465 (10%)

Query: 66  KIHAHITKTGVKPNTN--ISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           ++HA + +TG+   T+  ++ +L   +   G L  +  +       T   Y   I  +  
Sbjct: 307 ELHAAVLRTGLLDATDRAVAFRLQRAYAASGRLDLSLALLRRTRDPTAIFYTSAIHAHSS 366

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G    +L+L+  +++ G  P  +T S  L A   CR   P     GR +H    K  + 
Sbjct: 367 RGHRLPALALLSDMLAQGLLPTAHTLSASLPA---CRGLSP-----GRALHGYAFKLALA 418

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMML-EKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            D  + TAL+  Y + G  + AR +FD ML + +V+  T+M++ +   G ++DA  +F  
Sbjct: 419 GDSYVATALLGMYARAGDATAARALFDDMLPDPHVVSVTAMLTCYADMGALDDARSLFDG 478

Query: 243 TVEKDIVVYNAMIEGYSI------SIETARKAL-------EVHCQLIKNVFFE------- 282
              KD V +NAMI+GY+       ++   R+ L       EV   L+ +   +       
Sbjct: 479 LPTKDFVCWNAMIDGYTQHGRPNEALRLFRRMLGSGVEPDEVTVVLVLSAVAQLGTVESG 538

Query: 283 ---------------DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
                           V++G+AL+DMY KCG + DA  VF  +  K++  W +MI+GY  
Sbjct: 539 KWLHSYVKNSRRVQLSVRVGTALIDMYCKCGSLGDAVDVFHGIGDKDIVVWNAMINGYAM 598

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           +G+  +ALE+F   +E  + P  +TF+G L+AC H+G+V++GRE F+SMER+Y + PK+E
Sbjct: 599 HGDSRKALEMFVQSREQGLWPTDITFIGLLNACSHSGMVEEGREFFQSMEREYGIDPKIE 658

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA-NIAANEIFK 446
           HY CMVDLLGRAG +++A   V  M   P++ +W +LL++CRLH ++ +   IA   + K
Sbjct: 659 HYGCMVDLLGRAGLIKEAFCLVQSMKITPDAVMWVSLLAACRLHKNMSLGQQIADYLVAK 718

Query: 447 LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
             AN   G Y+ LSN  AA G W  V  +R  MK  G+ K+ GCS
Sbjct: 719 GLANS--GMYILLSNIYAAVGNWGEVARVRSMMKASGIQKEPGCS 761


>gi|326528029|dbj|BAJ89066.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 639

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 159/502 (31%), Positives = 261/502 (51%), Gaps = 41/502 (8%)

Query: 11  VFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFY------- 63
           +F+S  N   T   PN      L+ Y   + P  A SL SA+    +    F        
Sbjct: 112 IFASFPNPQATTFLPNTL----LRAYALNALPHAAVSLFSAMPQRDSFTYSFLIKALSSS 167

Query: 64  GLK----IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIA 119
           GL     +H+H+ K G   +T +   L+  + K G    A ++F+E+P+R   ++N  +A
Sbjct: 168 GLTPLRAVHSHVVKLGSIEDTYVGNALIDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMA 227

Query: 120 GYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA-QIL 178
             ++ G+V  +    R++       D  +++ +L   T            G+M  A ++ 
Sbjct: 228 AMVRQGEVASA----RRMFDEMPDKDTVSWNTVLDGYT----------KAGKMEDAFELF 273

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
           +C  + + V ++ +V  Y K G    AR++FD M  KN++  T M+S     G VE+A  
Sbjct: 274 QCMPERNVVSWSTVVSGYCKKGDIEMARVIFDKMPTKNLVTWTIMVSACAQNGLVEEAGR 333

Query: 239 IFRK----TVEKDIVVYNAMIEGYSISIETARKAL--EVHCQLIKNVFFEDVKLGSALVD 292
           +F +     VE D+    A++   +   E+   AL   +H  +          + +A++D
Sbjct: 334 LFTQMKEAAVELDVA---AVVSILAACAESGSLALGKRIHRYVRTRQLGRSTHVCNAMID 390

Query: 293 MYAKCGKIDDARRVFD-HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
           M+ KCG ++ A  VFD  + +K+  +W ++I G+  +G+ ++AL+ F  M+    +P+ V
Sbjct: 391 MFCKCGCVNRADYVFDTEIAEKDSVSWNTIIGGFAMHGHGDKALDFFAQMKLQGFRPDAV 450

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
           T +  LSAC H G V++GR+ F +MERDY + P++EHY CM+DLLGR G +E+A+  +  
Sbjct: 451 TMINVLSACTHMGFVEEGRQHFSNMERDYGIVPQIEHYGCMIDLLGRGGLIEEAVGLIKS 510

Query: 412 MPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471
           MP  PN  +W +LLS+CRLH +VE A IA NE+ KL  ++  G Y  LSN  A AG+W  
Sbjct: 511 MPWDPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSN-AGNYAVLSNIYAEAGQWSD 569

Query: 472 VTELREKMKLRGVLKDTGCSWV 493
           + + R +MK  G  K  G SW+
Sbjct: 570 MAKARMQMKGTGSQKSAGSSWI 591



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 65/275 (23%), Positives = 115/275 (41%), Gaps = 44/275 (16%)

Query: 173 VHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM--LEKNVICSTSMISGFMSQ 230
           +HAQ+LK  +  D +  + L+ SY    +   +R +F      +       +++  +   
Sbjct: 77  LHAQLLKHGLHLDPLAASKLISSYALQRRLPASRRIFASFPNPQATTFLPNTLLRAYALN 136

Query: 231 GFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSAL 290
                A  +F    ++D   Y+ +I+  S S  T  +A  VH  ++K    ED  +G+AL
Sbjct: 137 ALPHAAVSLFSAMPQRDSFTYSFLIKALSSSGLTPLRA--VHSHVVKLGSIEDTYVGNAL 194

Query: 291 VDMYAK-------------------------------CGKIDDARRVFDHMQQKNVFTWT 319
           +D Y+K                                G++  ARR+FD M  K+  +W 
Sbjct: 195 IDAYSKNGGFLDASKVFEEMPRRDTVSWNSAMAAMVRQGEVASARRMFDEMPDKDTVSWN 254

Query: 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD 379
           +++DGY K G    A ELF    +C  + N V++   +S     G ++  R IF+ M   
Sbjct: 255 TVLDGYTKAGKMEDAFELF----QCMPERNVVSWSTVVSGYCKKGDIEMARVIFDKMP-- 308

Query: 380 YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
                 +  +  MV    + G +E+A +   +M E
Sbjct: 309 ---TKNLVTWTIMVSACAQNGLVEEAGRLFTQMKE 340



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 56/238 (23%), Positives = 96/238 (40%), Gaps = 32/238 (13%)

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM--QQKNVFTWTSMIDGYGK 327
           E+H QL+K+    D    S L+  YA   ++  +RR+F      Q   F   +++  Y  
Sbjct: 76  ELHAQLLKHGLHLDPLAASKLISSYALQRRLPASRRIFASFPNPQATTFLPNTLLRAYAL 135

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACG-------HAGLVDKGREIFESMERDY 380
           N  P+ A+ LF  M +      Y   + ALS+ G       H+ +V  G     S+E  Y
Sbjct: 136 NALPHAAVSLFSAMPQ-RDSFTYSFLIKALSSSGLTPLRAVHSHVVKLG-----SIEDTY 189

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIA 440
                      ++D   + G    A K   EMP + ++  W + +++     +V     +
Sbjct: 190 VGN-------ALIDAYSKNGGFLDASKVFEEMPRR-DTVSWNSAMAAMVRQGEVA----S 237

Query: 441 ANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498
           A  +F    +    ++  + +    AGK +   EL + M  R V+     SW    SG
Sbjct: 238 ARRMFDEMPDKDTVSWNTVLDGYTKAGKMEDAFELFQCMPERNVV-----SWSTVVSG 290


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 151/441 (34%), Positives = 247/441 (56%), Gaps = 26/441 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+ IH++  K G++    +S KL+ L+ + G+LK   ++FD +  R L ++N +I  Y  
Sbjct: 266 GVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYEL 325

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMI------LKASTCCRSNVPLPRNLGRMVHAQI 177
           N Q   ++ L +++  S  +PD  T   +      L     CRS        G  +    
Sbjct: 326 NEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLE--- 382

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
                  D  +  A+V  Y K G    AR VF+ +  K+VI   ++ISG+   GF  +A 
Sbjct: 383 -------DITIGNAVVVMYAKLGLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAI 435

Query: 238 EIFRKTVEKDIVVYNAMIEGYSISIETA-------RKALEVHCQLIKNVFFEDVKLGSAL 290
           E++    E+   +  +  +G  +S+  A       R+ +++H +L+KN  + DV +G++L
Sbjct: 436 EMYNIMEEEGGEI--SANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVGTSL 493

Query: 291 VDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY 350
            DMY KCG++DDA  +F  + + N   W ++I  +G +G+  +A+ LF  M +  V+P++
Sbjct: 494 ADMYGKCGRLDDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDH 553

Query: 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410
           +TF+  LSAC H+GLVD+G   FE M+ DY + P ++HY CMVDL GRAG LE AL F+ 
Sbjct: 554 ITFVTLLSACSHSGLVDEGEWCFEMMQTDYGITPSLKHYGCMVDLYGRAGQLEIALNFIK 613

Query: 411 EMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
            MP +P++ +W ALLS+CR+H +V++  IA+  +F++   +  G +V LSN  A+AGKW+
Sbjct: 614 SMPLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEP-EHVGYHVLLSNMYASAGKWE 672

Query: 471 SVTELREKMKLRGVLKDTGCS 491
            V E+R     +G+ K  G S
Sbjct: 673 GVDEIRSITSGKGLRKTPGWS 693



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 117/439 (26%), Positives = 209/439 (47%), Gaps = 25/439 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G KIH    K G   +  ++  L+ L+ + GA+  A  +FDE+P R + ++N MI+GY +
Sbjct: 169 GNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQ 228

Query: 124 NGQVEESLSLVRKLVSSGERP-DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +G  +E+L+L     S G R  D  T   +L A T          N G  +H+  +K  +
Sbjct: 229 SGNAKEALTL-----SDGLRAMDSVTVVSLLSACT-----EAGDFNRGVTIHSYSIKHGL 278

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           +++  +   L+D Y + G     + VFD M  +++I   S+I  +        A  +F++
Sbjct: 279 ESELFVSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQE 338

Query: 243 T----VEKDIVVYNAMIEGYSISIETARKALEVH-CQLIKNVFFEDVKLGSALVDMYAKC 297
                ++ D +   ++    S  +   R    V    L K  F ED+ +G+A+V MYAK 
Sbjct: 339 MRLSRIQPDCLTLISLASILS-QLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKL 397

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE--CCVQPNYVTFLG 355
           G +D AR VF+ +  K+V +W ++I GY +NG  ++A+E++ +M+E    +  N  T++ 
Sbjct: 398 GLVDSARAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVS 457

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            L AC  AG + +G ++   + ++  +   +     + D+ G+ G L+ AL    ++P +
Sbjct: 458 VLPACSQAGALRQGMKLHGRLLKN-GLYLDVFVGTSLADMYGKCGRLDDALSLFYQIP-R 515

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
            NS  W  L++    H   E A +   E+           +V L +  + +G  D     
Sbjct: 516 VNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWC 575

Query: 476 REKMK----LRGVLKDTGC 490
            E M+    +   LK  GC
Sbjct: 576 FEMMQTDYGITPSLKHYGC 594



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 114/430 (26%), Positives = 198/430 (46%), Gaps = 27/430 (6%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +HA +  +    N  IS KL+ L+   G +  A   FD +  R + A+N MI+GY + G 
Sbjct: 73  LHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGRAGY 132

Query: 127 VEESLSLVRK-LVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             E +      ++SSG +PD  TF  +LKA   CR+        G  +H   LK     D
Sbjct: 133 SSEVIRCFSLFMLSSGLQPDYRTFPSVLKA---CRNVTD-----GNKIHCLALKFGFMWD 184

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             +  +L+  Y + G    ARI+FD M  +++    +MISG+   G  ++A  +      
Sbjct: 185 VYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTLSDGLRA 244

Query: 246 KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARR 305
            D V   +++   + + +  R  + +H   IK+    ++ + + L+D+YA+ G + D ++
Sbjct: 245 MDSVTVVSLLSACTEAGDFNR-GVTIHSYSIKHGLESELFVSNKLIDLYAEFGSLKDCQK 303

Query: 306 VFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365
           VFD M  +++ +W S+I  Y  N  P +A+ LF  M+   +QP+ +T +   S     G 
Sbjct: 304 VFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSRIQPDCLTLISLASILSQLGE 363

Query: 366 VDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV--WAA 423
           +   R +     R       +     +V +  + G ++ A      +   PN DV  W  
Sbjct: 364 IRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWL---PNKDVISWNT 420

Query: 424 LLSSCRLH----DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           ++S    +    + +EM NI   E  +++AN   G +V++    + AG       LR+ M
Sbjct: 421 IISGYAQNGFASEAIEMYNIMEEEGGEISANQ--GTWVSVLPACSQAGA------LRQGM 472

Query: 480 KLRGVLKDTG 489
           KL G L   G
Sbjct: 473 KLHGRLLKNG 482



 Score = 84.3 bits (207), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 116/247 (46%), Gaps = 22/247 (8%)

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
            + +HA+++  +   +  +   LV+ Y   G  + AR  FD +  ++V     MISG+  
Sbjct: 70  AKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDHIHNRDVYAWNLMISGYGR 129

Query: 230 QGFVEDAEEIF-----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDV 284
            G+  +    F        ++ D   + ++++    +        ++HC  +K  F  DV
Sbjct: 130 AGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLK----ACRNVTDGNKIHCLALKFGFMWDV 185

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
            + ++L+ +Y + G + +AR +FD M  +++ +W +MI GY ++GN  +AL L     + 
Sbjct: 186 YVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQSGNAKEALTL----SDG 241

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC----MVDLLGRAG 400
               + VT +  LSAC  AG  ++G  I       YS+K  +E        ++DL    G
Sbjct: 242 LRAMDSVTVVSLLSACTEAGDFNRGVTI-----HSYSIKHGLESELFVSNKLIDLYAEFG 296

Query: 401 SLEQALK 407
           SL+   K
Sbjct: 297 SLKDCQK 303


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 139/433 (32%), Positives = 243/433 (56%), Gaps = 15/433 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL-PQRTLSAYNYMIAGYLKN 124
           ++H  + K G +   +I   L++ + KC ++  A ++F        +  +  MI G+++N
Sbjct: 327 QLHCGVVKNGYEFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFVQN 386

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
              ++++ L  ++   G RP+ +T+S +L            P +L   +HAQI+K   + 
Sbjct: 387 NNNKKAVDLFCQMSREGVRPNHFTYSTVLAGK---------PSSLLSQLHAQIIKAYYEK 437

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
              + TAL+D+YVK G    +  VF  +  K+++  ++M++G       E A E+F + V
Sbjct: 438 VPSVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLV 497

Query: 245 EKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           ++ +      ++++I   S S  T     ++H   +K+     + + SAL+ MY+K G I
Sbjct: 498 KEGVKPNEYTFSSVINACSSSAATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNI 557

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           + A +VF   +++++ +W SMI GYG++G+  +ALE+F +MQ   +  + VTF+G L+AC
Sbjct: 558 ESAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTAC 617

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            HAGLV++G + F  M +DY +  K EHY+CMVDL  RAG  ++A+  +  MP   +  +
Sbjct: 618 THAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTI 677

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W  LL++CR+H ++E+  +AA ++  L  ND  G YV LSN  A AG W+    +R+ M 
Sbjct: 678 WRTLLAACRVHRNLELGKLAAEKLVSLQPNDAVG-YVLLSNIHAVAGNWEEKAHVRKLMD 736

Query: 481 LRGVLKDTGCSWV 493
            R V K+ GCSW+
Sbjct: 737 ERKVKKEAGCSWI 749



 Score =  128 bits (321), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 191/381 (50%), Gaps = 21/381 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H    K+G   + ++   L+ +++K    +    +FDE+  + + ++  +++GY +
Sbjct: 123 GRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYAR 182

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  +E + L+ ++   G  P+G+TF+ +L A     ++  +    G  VHA I+K   +
Sbjct: 183 NGLNDEVIHLINQMQMEGVNPNGFTFATVLGA----LADESIIEG-GVQVHAMIVKNGFE 237

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               +  AL+  Y+K      A  VFD M+ ++ +    MI G+ + GF  +  ++F + 
Sbjct: 238 FTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRM 297

Query: 244 VEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKN--VFFEDVKLGSALVDMYAKC 297
               + +   +    ++ + + ++ L    ++HC ++KN   F +D++  +AL+  Y+KC
Sbjct: 298 RLAGVKLSRTVF-CTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIR--TALMVTYSKC 354

Query: 298 GKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
             +D+A ++F       NV TWT+MI G+ +N N  +A++LFC M    V+PN+ T+   
Sbjct: 355 SSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTV 414

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           L+    + L     +I ++    Y   P +     ++D   + G++ ++ +    +P K 
Sbjct: 415 LAGKPSSLLSQLHAQIIKAY---YEKVPSVA--TALLDAYVKTGNVVESARVFYSIPAK- 468

Query: 417 NSDVWAALLSSCRLHDDVEMA 437
           +   W+A+L+      D E A
Sbjct: 469 DIVAWSAMLTGLAQTRDSEKA 489



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 152/344 (44%), Gaps = 33/344 (9%)

Query: 97  KYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAS 156
           +YA Q+FDE P + +S YN ++  + +N    E+L L + L SSG   DG T S  LK  
Sbjct: 55  RYAHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVC 114

Query: 157 TCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216
                 V   + +GR VH Q LK     D  + T+LVD Y+K       R +FD M  KN
Sbjct: 115 -----GVLFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKN 169

Query: 217 VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN----AMIEGYSISIETARKALEVH 272
           V+  TS++SG+   G  ++   +  + ++ + V  N    A + G           ++VH
Sbjct: 170 VVSWTSLLSGYARNGLNDEVIHLINQ-MQMEGVNPNGFTFATVLGALADESIIEGGVQVH 228

Query: 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPN 332
             ++KN F     + +AL+ MY K   + DA  VFD M  ++  TW  MI GY   G   
Sbjct: 229 AMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYL 288

Query: 333 QALELFCMMQECCVQPNYVTFLGALSACG-----------HAGLVDKGREIFESMERDYS 381
           +  ++F  M+   V+ +   F  AL  C            H G+V  G E  + +     
Sbjct: 289 EGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRT--- 345

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
                   A MV    +  S+++A K         N   W A++
Sbjct: 346 --------ALMVT-YSKCSSVDEAFKLFSMADAAHNVVTWTAMI 380



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 4/138 (2%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G +IHA   K+G      +S  LL ++ K G ++ A ++F    +R + ++N MI GY 
Sbjct: 524 HGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYG 583

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           ++G  +++L + + + + G   D  TF  +L A T    +  L     +  +  I    +
Sbjct: 584 QHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACT----HAGLVEEGEKYFNIMIKDYHI 639

Query: 183 KADDVLYTALVDSYVKGG 200
                 Y+ +VD Y + G
Sbjct: 640 DKKXEHYSCMVDLYSRAG 657


>gi|296090147|emb|CBI39966.3| unnamed protein product [Vitis vinifera]
          Length = 726

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 149/467 (31%), Positives = 247/467 (52%), Gaps = 46/467 (9%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           IH  +   G   +  I   L+ ++ +   L  A ++F+E+P R + ++N +I+GY  NG 
Sbjct: 137 IHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGY 196

Query: 127 VEESLSLVRKLVS------SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
             E+L +  + +       +  +PD  T + IL+A   C     L    G+ VH  ++  
Sbjct: 197 WNEALEIYYQSIKLFMEMVNQFKPDLLTITSILQA---CGHLGDL--EFGKYVHDYMITS 251

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
             + D      L++ Y K G    ++ VF  M  K+ +   SMI+ ++  G + D+ ++F
Sbjct: 252 GYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGDSLKVF 311

Query: 241 RKTVEKDIVVYNAMI---------------------EGYSISIET-------------AR 266
                +DI+ +N +I                     EG +  + T              R
Sbjct: 312 ENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKR 371

Query: 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
           +  E+H  + K     DV +G+ L++MY+KCG + ++ +VF  M+ K+V TWT++I   G
Sbjct: 372 QGKEIHGCIFKLGLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMKTKDVVTWTALISACG 431

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM 386
             G   +A+  F  M+   + P++V F+  + AC H+GLV++G   F  M++DY ++P++
Sbjct: 432 MYGEGKKAVRAFGEMEAAGIVPDHVAFVAIIFACSHSGLVEEGLNYFHRMKKDYKIEPRI 491

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446
           EHYAC+VDLL R+  L++A  F+L MP KP+S +W ALLS+CR+  D E+A   +  I +
Sbjct: 492 EHYACVVDLLSRSALLDKAEDFILSMPLKPDSSIWGALLSACRMSGDTEIAERVSERIIE 551

Query: 447 LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           LN +D  G YV +SN  AA GKWD V  +R+ +K RG+ KD GCSW+
Sbjct: 552 LNPDD-TGYYVLVSNIYAALGKWDQVRSIRKSIKARGLKKDPGCSWM 597



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 88/382 (23%), Positives = 169/382 (44%), Gaps = 55/382 (14%)

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P   +  +N +I     NG   E+LSL  +      +PD YTF  ++ A         L 
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGL-----LD 130

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
             + + +H ++L     +D  +  AL+D Y +      AR VF+ M  ++V+   S+ISG
Sbjct: 131 FEMAKSIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISG 190

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE-------------VHC 273
           + + G+  +A EI+ ++++    ++  M+  +   + T    L+             VH 
Sbjct: 191 YNANGYWNEALEIYYQSIK----LFMEMVNQFKPDLLTITSILQACGHLGDLEFGKYVHD 246

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
            +I + +  D    + L++MYAKCG +  ++ VF  M+ K+  +W SMI+ Y +NG    
Sbjct: 247 YMITSGYECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGKMGD 306

Query: 334 ALELF-----------------CMMQECC--------------VQPNYVTFLGALSACGH 362
           +L++F                 C+  E C              V P+  T L  L  C  
Sbjct: 307 SLKVFENMKARDIITWNTIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSL 366

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
                +G+EI   + +   ++  +     ++++  + GSL  + + V ++ +  +   W 
Sbjct: 367 LAAKRQGKEIHGCIFK-LGLESDVPVGNVLIEMYSKCGSLRNSFQ-VFKLMKTKDVVTWT 424

Query: 423 ALLSSCRLHDDVEMANIAANEI 444
           AL+S+C ++ + + A  A  E+
Sbjct: 425 ALISACGMYGEGKKAVRAFGEM 446


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 153/477 (32%), Positives = 259/477 (54%), Gaps = 20/477 (4%)

Query: 26  NQTFPPKLQNYDSL---SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNI 82
           N      L+ +D +   S  + + ++ S L   +  D    G+ IH +  K G++ +  +
Sbjct: 218 NGKVAEALEVFDEMRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFV 277

Query: 83  SIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE 142
              L+ ++ K G L+ A  +F+++  R + ++N ++A + +N +   +L +  K+ S G 
Sbjct: 278 CNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGV 337

Query: 143 RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK-CDVKADDVLYTALVDSYVKGGK 201
            PD    +++  AS        L     R +H  + + C    D  L  A++D Y K G 
Sbjct: 338 VPD--LLTLVSLASVAAELGNFLS---SRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGF 392

Query: 202 TSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS 261
              AR VF+ +  K+VI   S+I+G+   G   +A +++         V N   +G  +S
Sbjct: 393 IDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPN---QGTWVS 449

Query: 262 IETA-------RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKN 314
           I TA       ++ ++ H QLIKN  + D+ + + LVDMY KCGK+ DA  +F  +  ++
Sbjct: 450 ILTAHSQLGALKQGMKAHGQLIKNFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQS 509

Query: 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374
             +W ++I  +G +G   +A++LF  MQ   V+P+++TF+  LSAC H+GLVD+G+  F+
Sbjct: 510 SVSWNAIISCHGLHGYGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQWCFQ 569

Query: 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDV 434
            M+  Y ++P ++HY CMVDL GRAG LE+A  FV  MP +P+  VW ALL +CR+H++V
Sbjct: 570 LMQETYGIRPSLKHYGCMVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGACRIHENV 629

Query: 435 EMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
           E+    ++ + K+ + +  G YV LSN  A  G W+ V E+R   + RG+ K  G S
Sbjct: 630 ELVRTVSDHLLKVES-ENVGYYVLLSNIYAKLGHWEGVDEVRSLARDRGLKKTPGWS 685



 Score =  144 bits (362), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 111/444 (25%), Positives = 216/444 (48%), Gaps = 32/444 (7%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G K+H  + K G + +  I+   +  + + G +  A  +FD +  R +  +N MI+G+  
Sbjct: 158 GRKVHCLVLKLGFECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYL 217

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG+V E+L +  ++       D  T S +L    C + +  +    G ++H   +K  ++
Sbjct: 218 NGKVAEALEVFDEMRFKSVSMDSVTISSLL--PICVQLDDIIS---GVLIHVYAIKLGLE 272

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +  AL++ Y K G+   A  +F+ M  ++++   S+++ F        A  ++ K 
Sbjct: 273 FDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKM 332

Query: 244 ----VEKDIVVYNAMIEGYSISIETAR--KALEVHCQLIKNVFF-EDVKLGSALVDMYAK 296
               V  D++    ++   S++ E      +  +H  + +  +F  D+ LG+A++DMYAK
Sbjct: 333 HSIGVVPDLL---TLVSLASVAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAK 389

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNYVTFLG 355
            G ID AR+VF+ +  K+V +W S+I GY +NG  N+A++++  M+      PN  T++ 
Sbjct: 390 LGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVS 449

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            L+A    G + +G +    + +++ +   +    C+VD+ G+ G L  AL    E+P +
Sbjct: 450 ILTAHSQLGALKQGMKAHGQLIKNF-LYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQ 508

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFK-LNANDRPGAYVALSNTLAAA-------- 466
            +S  W A++S   LH       + A ++FK + +      ++   + L+A         
Sbjct: 509 -SSVSWNAIISCHGLHG----YGLKAVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDE 563

Query: 467 GKWDSVTELREKMKLRGVLKDTGC 490
           G+W     ++E   +R  LK  GC
Sbjct: 564 GQW-CFQLMQETYGIRPSLKHYGC 586



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 105/436 (24%), Positives = 196/436 (44%), Gaps = 42/436 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++HA +  +G   +  +S KL+  +   G + +A   FD++  + +  +N MI+ Y + G
Sbjct: 61  QLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIG 120

Query: 126 QVEESLSLVRKLVS-SGERPDGYTFSMILKASTCCRSNVPLPRNL--GRMVHAQILKCDV 182
               ++    + +S S  + D YTF  +++A            NL  GR VH  +LK   
Sbjct: 121 HFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACG----------NLDDGRKVHCLVLKLGF 170

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR- 241
           + D  +  + +  Y + G  S A  +FD M+ +++    +MISGF   G V +A E+F  
Sbjct: 171 ECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDE 230

Query: 242 ---KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
              K+V  D V  ++++    + ++     + +H   IK     D+ + +AL++MYAK G
Sbjct: 231 MRFKSVSMDSVTISSLLP-ICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFG 289

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           ++  A  +F+ M+ +++ +W S++  + +N  P  AL ++  M    V P+ +T +   S
Sbjct: 290 ELRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLAS 349

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
                G     R I   + R       +     ++D+  + G ++ A K    +P K   
Sbjct: 350 VAAELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVK--- 406

Query: 419 DV--WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT--- 473
           DV  W +L++           N  ANE   + ++ R       S  +   G W S+    
Sbjct: 407 DVISWNSLITGYS-------QNGLANEAIDVYSSMR-----YYSGAVPNQGTWVSILTAH 454

Query: 474 ----ELREKMKLRGVL 485
                L++ MK  G L
Sbjct: 455 SQLGALKQGMKAHGQL 470



 Score = 77.4 bits (189), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/271 (25%), Positives = 125/271 (46%), Gaps = 23/271 (8%)

Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
           +L + +HA ++         L   L++ Y   G   +AR+ FD +  K+V    SMIS +
Sbjct: 57  HLAKQLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAY 116

Query: 228 MSQGFVEDAEEIFRKTV-----EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
              G    A + F + +     + D   +  +I     +++  RK   VHC ++K  F  
Sbjct: 117 ARIGHFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACG-NLDDGRK---VHCLVLKLGFEC 172

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           DV + ++ +  Y++ G +  A  +FD+M  +++ TW +MI G+  NG   +ALE+F  M+
Sbjct: 173 DVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMR 232

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH--YAC--MVDLLGR 398
              V  + VT    L  C     +  G  I       Y++K  +E   + C  ++++  +
Sbjct: 233 FKSVSMDSVTISSLLPICVQLDDIISGVLI-----HVYAIKLGLEFDLFVCNALINMYAK 287

Query: 399 AGSLEQALKFVLEMPEKPNSDV--WAALLSS 427
            G L  A     +M  +   D+  W +LL++
Sbjct: 288 FGELRSAETIFNQMKVR---DIVSWNSLLAA 315


>gi|224067848|ref|XP_002302563.1| predicted protein [Populus trichocarpa]
 gi|222844289|gb|EEE81836.1| predicted protein [Populus trichocarpa]
          Length = 514

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 140/390 (35%), Positives = 230/390 (58%), Gaps = 13/390 (3%)

Query: 113 AYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRM 172
           ++N +I G ++ G  E++LS  +K+ S   + D YT   +L +     +++ + +N    
Sbjct: 8   SWNSLILGCVREGFEEDALSFFQKMRSRDMKIDEYTLPSVLNSF----ASMKVMQN-AIS 62

Query: 173 VHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGF 232
           VH  I+K   +A  ++  AL+D Y K GK   A +VF  M++K+V+  TS+++G+   G 
Sbjct: 63  VHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKMVDKDVVSWTSLVTGYSHNGS 122

Query: 233 VEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGS 288
            E+A ++F K     V  D +   +++   +  +       ++H  L+K+     + + +
Sbjct: 123 YEEAIKLFCKMRISGVYPDQIAVASVLSACA-ELTVMDFGQQIHATLVKSGLESSLSVDN 181

Query: 289 ALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348
           +LV MYAKCG I DA R FD+M  ++V +WT++I GY +NG    +L+ +  M     +P
Sbjct: 182 SLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVGYAQNGRGKHSLQFYDQMIATGTKP 241

Query: 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKF 408
           +Y+TF+G L AC H GL+  GR  FE+M++ Y +KP  EHYACM+DLLGR+G L +A   
Sbjct: 242 DYITFIGLLFACSHNGLLGSGRAYFEAMDKVYGIKPGPEHYACMIDLLGRSGKLAEAKGL 301

Query: 409 VLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA-NDRPGAYVALSNTLAAAG 467
           + +M   P++ VW ALL++CR+H ++E+  +AA  +F+L   N  P  YV LSN  +AAG
Sbjct: 302 LNQMVVAPDAVVWKALLAACRVHKELELGEMAAKNLFELEPMNSMP--YVMLSNMYSAAG 359

Query: 468 KWDSVTELREKMKLRGVLKDTGCSWVGTES 497
           KW+    +R  M+ RG+ K+ G SW+ T S
Sbjct: 360 KWEDAARIRRLMRSRGICKEPGYSWIETNS 389



 Score = 76.3 bits (186), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 61/285 (21%), Positives = 134/285 (47%), Gaps = 18/285 (6%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +LPS L  + +       + +H  I KTG +    ++  L+ ++ K G L  A  +F ++
Sbjct: 43  TLPSVLNSFASMKVMQNAISVHCLIIKTGFEAYKLVNNALIDMYAKQGKLDCAIMVFSKM 102

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
             + + ++  ++ GY  NG  EE++ L  K+  SG  PD    + +L  S C    V   
Sbjct: 103 VDKDVVSWTSLVTGYSHNGSYEEAIKLFCKMRISGVYPDQIAVASVL--SACAELTV--- 157

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
            + G+ +HA ++K  +++   +  +LV  Y K G    A   FD M  ++VI  T++I G
Sbjct: 158 MDFGQQIHATLVKSGLESSLSVDNSLVTMYAKCGSIVDANRAFDNMPTRDVISWTALIVG 217

Query: 227 FMSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
           +   G  + + + + + +    + D + +  ++  ++ S      +   + + +  V+  
Sbjct: 218 YAQNGRGKHSLQFYDQMIATGTKPDYITFIGLL--FACSHNGLLGSGRAYFEAMDKVY-- 273

Query: 283 DVKLG----SALVDMYAKCGKIDDARRVFDHM-QQKNVFTWTSMI 322
            +K G    + ++D+  + GK+ +A+ + + M    +   W +++
Sbjct: 274 GIKPGPEHYACMIDLLGRSGKLAEAKGLLNQMVVAPDAVVWKALL 318


>gi|147770365|emb|CAN78152.1| hypothetical protein VITISV_040250 [Vitis vinifera]
          Length = 606

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 165/507 (32%), Positives = 264/507 (52%), Gaps = 55/507 (10%)

Query: 28  TFP-PKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISI-K 85
           +FP P+  N + + +    +S    +    N ++PF   ++HA I KT    N  +SI  
Sbjct: 7   SFPIPQSPNRNQIHHVKPQSSETLKIDLLRNFNSPFELRQVHAQIIKT----NAPLSILP 62

Query: 86  LLILHLKCG---ALKYAGQMFD--ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSS 140
           L  + L C    +  YA Q+F+  E  +     +N  +    +     +++ L  +L   
Sbjct: 63  LTRVGLVCAFTPSFHYAQQIFECVEKQKPETFVWNSCLKALAEGDSPIDAIMLFYRLRQY 122

Query: 141 GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGG 200
              PD +T S +L+A   C + + L    GR++H  + K   +++  L   +V  Y   G
Sbjct: 123 DVCPDTFTCSSVLRA---CLNLLDLSN--GRILHGVVEKVGFRSNLYLQNMIVHLYASCG 177

Query: 201 KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI 260
           +   AR++F+ M +++V+    MI+  + QG  E A ++F +  E+++  + +MI GY +
Sbjct: 178 EMGEARLLFEKMPQRDVVTWNIMIAQLIKQGDHEGAYDLFSRMPERNVRSWTSMIAGY-V 236

Query: 261 SIETARKALE---------VHCQLIKNV--------------------------FFEDVK 285
               A++A+          V C  +  V                          F  +V+
Sbjct: 237 QCGKAKEAIHLFAKMEEAGVKCNEVTVVAVLAACADLGALDLGMRIHEYSNRHGFKRNVR 296

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           + + L+DMY KCG +++A +VF+ M+++ V +W++MI G   +G   +AL LF  M +  
Sbjct: 297 ISNTLIDMYVKCGCLEEACKVFEEMEERTVVSWSAMIGGLAMHGRAEEALRLFSDMSQVG 356

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
           ++PN VTF+G L AC H GL+ +GR  F SM RDY + P++EHY CMVDLL RAG L +A
Sbjct: 357 IEPNGVTFIGLLHACSHMGLISEGRRFFASMTRDYGIIPQIEHYGCMVDLLSRAGLLHEA 416

Query: 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA-NDRPGAYVALSNTLA 464
            +F+L MP KPN  VW ALL +CR+H +VEMA  A   + +L+  ND  G YV LSN  A
Sbjct: 417 HEFILNMPMKPNGVVWGALLGACRVHKNVEMAEEAIKHLLELDPLND--GYYVVLSNIYA 474

Query: 465 AAGKWDSVTELREKMKLRGVLKDTGCS 491
            AG+W+    +R+ MK R V K  G S
Sbjct: 475 EAGRWEDTARVRKFMKDRQVKKTPGWS 501


>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03380, mitochondrial; Flags: Precursor
 gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
 gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 151/438 (34%), Positives = 239/438 (54%), Gaps = 22/438 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G   H  + K+G++ ++ +   LL +++KCG +  A ++F+E     L  +  MI GY  
Sbjct: 261 GKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTH 320

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL--GRMVHAQILKCD 181
           NG V E+LSL +K+     +P+  T + +L       S   L  NL  GR VH   +K  
Sbjct: 321 NGSVNEALSLFQKMKGVEIKPNCVTIASVL-------SGCGLIENLELGRSVHGLSIKVG 373

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +  D  +  ALV  Y K  +   A+ VF+M  EK+++   S+ISGF   G + +A  +F 
Sbjct: 374 I-WDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFH 432

Query: 242 KTVEKDIV--------VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDM 293
           +   + +         +++A     S+++ ++  A  V    + +     V +G+AL+D 
Sbjct: 433 RMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLAS---SSVHVGTALLDF 489

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           YAKCG    AR +FD +++KN  TW++MI GYGK G+   +LELF  M +   +PN  TF
Sbjct: 490 YAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTF 549

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
              LSACGH G+V++G++ F SM +DY+  P  +HY CMVD+L RAG LEQAL  + +MP
Sbjct: 550 TSILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMP 609

Query: 414 EKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473
            +P+   + A L  C +H   ++  I   ++  L+ +D    YV +SN  A+ G+W+   
Sbjct: 610 IQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLHPDD-ASYYVLVSNLYASDGRWNQAK 668

Query: 474 ELREKMKLRGVLKDTGCS 491
           E+R  MK RG+ K  G S
Sbjct: 669 EVRNLMKQRGLSKIAGHS 686



 Score =  157 bits (397), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 127/464 (27%), Positives = 214/464 (46%), Gaps = 58/464 (12%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G KIH  + K     N  ++  LL ++ KCG +K A ++F+++  R +  +  MIAGY+K
Sbjct: 161 GKKIHCQLVKVPSFDNVVLT-GLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVK 219

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N   EE L L  ++  +    + YT+  ++ A   C     L +  G+  H  ++K  ++
Sbjct: 220 NDLCEEGLVLFNRMRENNVLGNEYTYGTLIMA---CTKLSALHQ--GKWFHGCLVKSGIE 274

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               L T+L+D YVK G  S AR VF+     +++  T+MI G+   G V +A  +F+K 
Sbjct: 275 LSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKM 334

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               ++ + V   +++ G  + IE       VH   IK V   D  + +ALV MYAKC +
Sbjct: 335 KGVEIKPNCVTIASVLSGCGL-IENLELGRSVHGLSIK-VGIWDTNVANALVHMYAKCYQ 392

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
             DA+ VF+   +K++  W S+I G+ +NG+ ++AL LF  M    V PN VT     SA
Sbjct: 393 NRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSA 452

Query: 360 CGHAGLVDKG-------------------------------------REIFESMERDYSM 382
           C   G +  G                                     R IF+++E   ++
Sbjct: 453 CASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTI 512

Query: 383 KPKMEHYACMVDLLGRAGSLEQALKFVLEM---PEKPNSDVWAALLSSCRLHDDVEMANI 439
                 ++ M+   G+ G    +L+   EM    +KPN   + ++LS+C     V     
Sbjct: 513 T-----WSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNEGKK 567

Query: 440 AANEIFK-LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
             + ++K  N       Y  + + LA AG+ +   ++ EKM ++
Sbjct: 568 YFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQ 611



 Score =  154 bits (388), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 114/370 (30%), Positives = 179/370 (48%), Gaps = 22/370 (5%)

Query: 18  RHYTLVPPNQ-TFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGL----------K 66
           R  TL P  +  FPP+  ++ ++   +       +  HY  S   F  L          +
Sbjct: 3   RSITLSPTRRFGFPPRCVSFTTIKELILTEENDGSSLHYAASSPCFLLLSKCTNIDSLRQ 62

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
            H  +T  G+  + +I+ KL+ L+   G  K A  +FD++P+     +  M+  Y  N +
Sbjct: 63  SHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKE 122

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
             E + L   L+  G R D   FS  LKA T  +       + G+ +H Q++K     D+
Sbjct: 123 SVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQD-----LDNGKKIHCQLVKVP-SFDN 176

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
           V+ T L+D Y K G+   A  VF+ +  +NV+C TSMI+G++     E+   +F +  E 
Sbjct: 177 VVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMREN 236

Query: 247 DIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
           + V+ N    G  I   T   AL      H  L+K+       L ++L+DMY KCG I +
Sbjct: 237 N-VLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISN 295

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           ARRVF+     ++  WT+MI GY  NG+ N+AL LF  M+   ++PN VT    LS CG 
Sbjct: 296 ARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGL 355

Query: 363 AGLVDKGREI 372
              ++ GR +
Sbjct: 356 IENLELGRSV 365



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 136/304 (44%), Gaps = 39/304 (12%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM-- 228
           R  H  +    +  D  + T LV  Y   G T  AR+VFD + E +      M+  +   
Sbjct: 61  RQSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLN 120

Query: 229 --SQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
             S   V+  + + +     D +V++  ++  +  ++      ++HCQL+K   F++V L
Sbjct: 121 KESVEVVKLYDLLMKHGFRYDDIVFSKALKACT-ELQDLDNGKKIHCQLVKVPSFDNVVL 179

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
            + L+DMYAKCG+I  A +VF+ +  +NV  WTSMI GY KN    + L LF  M+E  V
Sbjct: 180 -TGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNV 238

Query: 347 QPNYVTFLGALSACG-----------HAGLVDKGREIFESMER----------DYSMKPK 385
             N  T+   + AC            H  LV  G E+   +            D S   +
Sbjct: 239 LGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARR 298

Query: 386 MEHYACMVDLL---------GRAGSLEQALKFVLEMPE---KPNSDVWAALLSSCRLHDD 433
           + +    VDL+            GS+ +AL    +M     KPN    A++LS C L ++
Sbjct: 299 VFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIEN 358

Query: 434 VEMA 437
           +E+ 
Sbjct: 359 LELG 362


>gi|297804490|ref|XP_002870129.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315965|gb|EFH46388.1| hypothetical protein ARALYDRAFT_329829 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 853

 Score =  258 bits (660), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 146/419 (34%), Positives = 238/419 (56%), Gaps = 44/419 (10%)

Query: 99  AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
           A Q+FDE+P+    +YN M++ Y++NG  E++ S   +              M  K +  
Sbjct: 112 AHQLFDEIPEPDTFSYNIMLSCYVRNGNFEKAQSFFNR--------------MPFKDAAS 157

Query: 159 CRSNVPLPRNLGRMVHAQILKCDV-KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
             + +      G M  A++L   + + ++V + A++  Y++ G    A   F     + V
Sbjct: 158 WNTMITGYARRGEMEKARVLFYSMMEKNEVSWNAMISGYIECGDLEKAAHFFKAAPFRGV 217

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRK-TVEKDIVVYNAMIEGYSISIETARKALEVHCQLI 276
           +  T+MI+G+M    VE AE +F+  TV+K++V +NAMI GY   +E +R   E   +L 
Sbjct: 218 VAWTAMITGYMKAKKVELAEAMFKDMTVKKNLVTWNAMISGY---VENSRP--EDGLKLF 272

Query: 277 KNVFFEDVK-----LGSALVD-----------------MYAKCGKIDDARRVFDHMQQKN 314
           + +  E ++     L SAL+                  MY KCG++ DA ++F+ M++K+
Sbjct: 273 RAMLEEGIRPNSSGLSSALLGCSELSALCLGRQIHQIVMYCKCGELGDAWKLFEAMKKKD 332

Query: 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374
           V  W +MI GY ++GN  +AL LF  M++   +P+++TF+  L AC HAGLVD G   F+
Sbjct: 333 VVAWNAMISGYAQHGNAEKALCLFHEMRDSKTKPDWITFVAVLLACNHAGLVDIGMTYFD 392

Query: 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDV 434
           SM RDY ++P+ +HY CMVDLLGRAG +E+ALK +  MP +P++ V+  LL +CR+H +V
Sbjct: 393 SMVRDYRVEPRPDHYTCMVDLLGRAGKVEEALKLIRSMPFRPHAAVFGTLLGACRVHKNV 452

Query: 435 EMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           E+A  AA ++ +L+  +  G YV L+N  A+   W+ V  +R++MK   V+K  G SW+
Sbjct: 453 ELAEFAAEKLLELDPRNAAG-YVQLANIYASKNLWEDVARVRKRMKESNVVKVPGYSWI 510



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 65/293 (22%), Positives = 120/293 (40%), Gaps = 65/293 (22%)

Query: 55  YINSDTPFYGLKIHAHITKTGVKPNTN------------------ISIKLLILHLKCGAL 96
           Y+ +  P  GLK+   + + G++PN++                    I  ++++ KCG L
Sbjct: 259 YVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALCLGRQIHQIVMYCKCGEL 318

Query: 97  KYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAS 156
             A ++F+ + ++ + A+N MI+GY ++G  E++L L  ++  S  +PD  TF  +L   
Sbjct: 319 GDAWKLFEAMKKKDVVAWNAMISGYAQHGNAEKALCLFHEMRDSKTKPDWITFVAVL--- 375

Query: 157 TCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216
                                L C+       +  LVD     G T +  +V D  +E  
Sbjct: 376 ---------------------LACN-------HAGLVDI----GMTYFDSMVRDYRVEPR 403

Query: 217 VICSTSMISGFMSQGFVEDAEEIFRKT-VEKDIVVYNAMIEGYSI--SIETARKALEVHC 273
               T M+      G VE+A ++ R         V+  ++    +  ++E A  A E   
Sbjct: 404 PDHYTCMVDLLGRAGKVEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEKLL 463

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV-----FTWTSM 321
           +L        V+L     ++YA     +D  RV   M++ NV     ++W  +
Sbjct: 464 ELDPRNAAGYVQLA----NIYASKNLWEDVARVRKRMKESNVVKVPGYSWIEI 512



 Score = 51.6 bits (122), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 68/311 (21%), Positives = 112/311 (36%), Gaps = 100/311 (32%)

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK-------------------------- 123
           +++CG L+ A   F   P R + A+  MI GY+K                          
Sbjct: 196 YIECGDLEKAAHFFKAAPFRGVVAWTAMITGYMKAKKVELAEAMFKDMTVKKNLVTWNAM 255

Query: 124 ------NGQVEESLSLVRKLVSSGERPDGYTFSMIL----KASTCCRSNVPLPRNLGRMV 173
                 N + E+ L L R ++  G RP+    S  L    + S  C         LGR +
Sbjct: 256 ISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCSELSALC---------LGRQI 306

Query: 174 HAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFV 233
           H  ++ C                 K G+   A  +F+ M +K+V+   +MISG+   G  
Sbjct: 307 HQIVMYC-----------------KCGELGDAWKLFEAMKKKDVVAWNAMISGYAQHGNA 349

Query: 234 EDAEEIFRK----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSA 289
           E A  +F +      + D + + A++   +            H  L        V +G  
Sbjct: 350 EKALCLFHEMRDSKTKPDWITFVAVLLACN------------HAGL--------VDIGMT 389

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349
             D   +  +++      DH        +T M+D  G+ G   +AL+L   M     +P+
Sbjct: 390 YFDSMVRDYRVEPRP---DH--------YTCMVDLLGRAGKVEEALKLIRSMP---FRPH 435

Query: 350 YVTFLGALSAC 360
              F   L AC
Sbjct: 436 AAVFGTLLGAC 446



 Score = 44.3 bits (103), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 53/210 (25%), Positives = 84/210 (40%), Gaps = 19/210 (9%)

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349
           ++    + G ID A  VF  M+ KN  +W S++ G  K  +P++ +E   +  E   +P+
Sbjct: 67  IIATRVRSGDIDGALSVFHGMRAKNTVSWNSLLVGISK--DPSRMMEAHQLFDE-IPEPD 123

Query: 350 YVTFLGALSACGHAGLVDKGREIFESME-RDYSMKPKMEHYACMVDLLGRAGSLEQALKF 408
             ++   LS     G  +K +  F  M  +D +       +  M+    R G +E+A   
Sbjct: 124 TFSYNIMLSCYVRNGNFEKAQSFFNRMPFKDAA------SWNTMITGYARRGEMEKARVL 177

Query: 409 VLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGK 468
              M EK N   W A++S      D+E     A   FK        A+ A+      A K
Sbjct: 178 FYSMMEK-NEVSWNAMISGYIECGDLE----KAAHFFKAAPFRGVVAWTAMITGYMKAKK 232

Query: 469 WDSVTELREKMKLRGVLKDTGCSWVGTESG 498
                EL E M     +K    +W    SG
Sbjct: 233 ----VELAEAMFKDMTVKKNLVTWNAMISG 258



 Score = 41.2 bits (95), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 67/155 (43%), Gaps = 12/155 (7%)

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
           V   S LV +     ++ +A ++FD + + + F++  M+  Y +NGN  +A   F  M  
Sbjct: 93  VSWNSLLVGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNGNFEKAQSFFNRMP- 151

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME-HYACMVDLLGRAGSL 402
                +  ++   ++     G ++K R +F      YSM  K E  +  M+      G L
Sbjct: 152 ---FKDAASWNTMITGYARRGEMEKARVLF------YSMMEKNEVSWNAMISGYIECGDL 202

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           E+A  F    P +     W A+++       VE+A
Sbjct: 203 EKAAHFFKAAPFR-GVVAWTAMITGYMKAKKVELA 236


>gi|357469751|ref|XP_003605160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506215|gb|AES87357.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1026

 Score =  258 bits (659), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 156/464 (33%), Positives = 244/464 (52%), Gaps = 40/464 (8%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           GL +  H+ K G + +  +    + + L CG L  A  +F++   R L  +N MI G +K
Sbjct: 177 GLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVK 236

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G   E++ + +++ +   RP+  T  MI   S+C +       NLG+  H  I +  ++
Sbjct: 237 RGLAIEAIKIYKEMEAEKVRPNEIT--MIGMISSCSQVQ---DLNLGKEFHCYIKEHGLE 291

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               L  AL+D YVK G+   AR++FD M +K ++  T+M+ G+   GF++ A EI  K 
Sbjct: 292 FTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKI 351

Query: 244 VEKDIVVYNAMIEG--------------YSISIETARK--------------------AL 269
            EK +V +NA+I G              + + I T                        +
Sbjct: 352 PEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGI 411

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
            +H  + ++    DV LG+ALVDMYAKCG I  A +VF+ + Q+N  TWT++I G   +G
Sbjct: 412 WIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHG 471

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
           N   AL  F  M    + P+ +TFLG LSAC H GLV++GR+ F  M   +++ PK++HY
Sbjct: 472 NAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHY 531

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
           +CMVDLLGRAG LE+A + V  MP   ++ V  AL  +CR++ +V++    A ++ +++ 
Sbjct: 532 SCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDP 591

Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            D  G YV L++  + A  W      R+ M  +GV K  GCS V
Sbjct: 592 QDS-GNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLV 634



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 193/410 (47%), Gaps = 46/410 (11%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHL--KCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           +I A +  TG+  N   + +L+      +   L Y  ++   + +  + ++N  I GY++
Sbjct: 75  QIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRGYVE 134

Query: 124 NGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +G +E    L ++++  G  +PD +T+ ++LK   CC         LG  V   +LK   
Sbjct: 135 SGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKG--CCGQ---YSSCLGLGVLGHVLKFGF 189

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           + D  ++ A +   +  G+ S A  VF+    ++++   SMI+G + +G   +A +I+++
Sbjct: 190 ECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKE 249

Query: 243 T----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
                V  + +    MI   S  ++      E HC + ++     + L +AL+DMY KCG
Sbjct: 250 MEAEKVRPNEITMIGMISSCS-QVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCG 308

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNG----------------------------- 329
           ++  AR +FD+M QK + +WT+M+ GY + G                             
Sbjct: 309 ELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQ 368

Query: 330 --NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
                +AL LF  MQ   ++P+ VT +  LSAC   G +D G  I   +ER + +   + 
Sbjct: 369 AKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIER-HKLSIDVA 427

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
               +VD+  + G++ +AL+   E+P++ N   W A++    LH + + A
Sbjct: 428 LGTALVDMYAKCGNIARALQVFEEIPQR-NCLTWTAVICGLALHGNAQDA 476


>gi|242086084|ref|XP_002443467.1| hypothetical protein SORBIDRAFT_08g019910 [Sorghum bicolor]
 gi|241944160|gb|EES17305.1| hypothetical protein SORBIDRAFT_08g019910 [Sorghum bicolor]
          Length = 504

 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 154/461 (33%), Positives = 248/461 (53%), Gaps = 22/461 (4%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           ATSL SAL+      +  +   +HA + K G+  +   +  L  L L+ G  +YA ++FD
Sbjct: 21  ATSLASALKTAAARRSAAHVGPLHAVLRKLGLSASAIHATSLAHLALRSGLARYARELFD 80

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM-ILKASTCCRSNV 163
           E+P+R + ++  ++ G+   G   ++L+L+R++V SG  P+GY+ S  +L  +   RS +
Sbjct: 81  EMPRRDVVSWTSLVTGHAHQGLHRDALALLRRMVGSGVEPNGYSLSGGLLACAGVGRSAL 140

Query: 164 PLPRNLGRMVHAQILKCDVKA--DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
                 G+ +HA ++K   +   D V+   ++D Y + G   YA  VF +M  +N++   
Sbjct: 141 AH----GKEIHASVVKMSSRGPVDPVVENGVLDMYSRCGSIEYALRVFGVMRVRNMVACN 196

Query: 222 SMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISI------ETA--RKALEVHC 273
           SM++  +  G  EDA  +F       + V     +G+S SI      E A  ++ ++VH 
Sbjct: 197 SMMAALLGTGQAEDALRLFVSMASCGVGV-----DGFSFSIVVDACGELALLKQGMQVHA 251

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
           Q++   F  DV + ++LVDMYAKCG +D A  VF  +   +   WT+MI  YGK G    
Sbjct: 252 QVVGGGFEADVVVRNSLVDMYAKCGCVDSAELVFKAVSSNDALLWTTMISAYGKFGRVRD 311

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACM 392
           A+ +F  M    ++ + + +L  LSAC H GLV +G   F  M +   S+K + EHY CM
Sbjct: 312 AVSMFERMAHLGIKQDGIAYLAVLSACSHGGLVREGWYYFNLMSDGSSSVKMQPEHYGCM 371

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR 452
            DLL R G LE+AL+F+  MP   +   W+ALL+S R+H + ++   AA+ + KL+  + 
Sbjct: 372 ADLLCRRGYLEEALEFIQNMPFDSSVAAWSALLNSSRIHGNAKLGQFAASFLLKLDPENH 431

Query: 453 PGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
              +VALS+  A+   W     +RE M    V K+ GCSWV
Sbjct: 432 SN-WVALSSVHASGNDWHETWTIRESMSRVCVKKEPGCSWV 471


>gi|298205169|emb|CBI17228.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 150/431 (34%), Positives = 227/431 (52%), Gaps = 24/431 (5%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IHA I    +  N+ +  +L+       +L YA  +F       L  +N +I G  +N 
Sbjct: 58  QIHAQIFLHNLFSNSRVVTQLISSSCSLKSLDYALSIFRCFDHPNLFVFNALIRGLAENS 117

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           + E S+S    ++    RPD  T   +LK+         +   LGR +H  ++K  ++ D
Sbjct: 118 RFEGSVSHFVLMLRLSIRPDRLTLPFVLKSVAAL-----VDVGLGRCLHGGVMKLGLEFD 172

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             +  +LVD YVK G+  +   +FD   ++N   S  + +G                   
Sbjct: 173 SFVRVSLVDMYVKIGELGFGLQLFDESPQRNKAESILLWNGVRPN--------------- 217

Query: 246 KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARR 305
            D+ V +A++      I   +    +H  L  N F  +  +G+ALVDMYAKCG I  A R
Sbjct: 218 -DLTVVSALLA--CTKIGALQVGERIHNYLSSNGFQLNRGIGTALVDMYAKCGNIKSASR 274

Query: 306 VFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365
           VF   + K++ TW+ MI G+  +G  +QAL+ F  M+   + P+ V FL  L+AC H+G 
Sbjct: 275 VFVETKGKDLLTWSVMIWGWAIHGCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGN 334

Query: 366 VDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
           VD+G   FESM  DYS++P M+HY  +VDLLGRAG L++AL F+  MP  P+  +W AL 
Sbjct: 335 VDQGLNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSFIQSMPINPDFVIWGALF 394

Query: 426 SSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485
            +CR H ++EMA + A ++ +L     PG+YV LSN  AA G+W+ V  +R  MK RGV 
Sbjct: 395 CACRAHKNIEMAELTAEKLLQLEPK-HPGSYVFLSNVYAAVGRWEDVERVRTLMKNRGVE 453

Query: 486 KDTGCSWVGTE 496
           KD G S++  E
Sbjct: 454 KDPGWSYIEVE 464



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 63/302 (20%), Positives = 124/302 (41%), Gaps = 66/302 (21%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H  + K G++ ++ + + L+ +++K G L +  Q+FDE PQR  +           
Sbjct: 157 GRCLHGGVMKLGLEFDSFVRVSLVDMYVKIGELGFGLQLFDESPQRNKA----------- 205

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
                ES+     L+ +G RP+  T   ++ A   C     L   +G  +H  +     +
Sbjct: 206 -----ESI-----LLWNGVRPNDLT---VVSALLACTKIGAL--QVGERIHNYLSSNGFQ 250

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +  + TALVD Y K G                                ++ A  +F +T
Sbjct: 251 LNRGIGTALVDMYAKCGN-------------------------------IKSASRVFVET 279

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
             KD++ ++ MI G++I      +AL+   ++       D  +  A++   +  G +D  
Sbjct: 280 KGKDLLTWSVMIWGWAIH-GCFDQALQCFVKMKSAGINPDEVIFLAILTACSHSGNVDQG 338

Query: 304 RRVFDHMQ-----QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
              F+ M+     +  +  +T ++D  G+ G  ++AL     +Q   + P++V +     
Sbjct: 339 LNFFESMRLDYSIEPTMKHYTLIVDLLGRAGRLDEALSF---IQSMPINPDFVIWGALFC 395

Query: 359 AC 360
           AC
Sbjct: 396 AC 397


>gi|49333391|gb|AAT64030.1| putative pentatricopeptide repeat protein [Gossypium hirsutum]
          Length = 805

 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 147/447 (32%), Positives = 248/447 (55%), Gaps = 24/447 (5%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           ++ S L    NS T   G  +H+   K+  +   N S  LL ++ KCG L  A ++F+++
Sbjct: 253 TIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEKM 312

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
            +R + ++  MIAGY ++G  + ++ L++++   G + D    + IL A  C RS     
Sbjct: 313 GERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAITSILHA--CARSG---S 367

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
            + G+ VH  I   ++ ++  +  AL+D Y K G    A  VF  M+ K++I   +M+  
Sbjct: 368 LDNGKDVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFSTMVVKDIISWNTMVGE 427

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
                   D+  +             A I     S+    +  E+H  +++N +  D  +
Sbjct: 428 LKP-----DSRTM-------------ACILPACASLSALERGKEIHGYILRNGYSSDRHV 469

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
            +ALVD+Y KCG +  AR +FD +  K++ +WT MI GYG +G  N+A+  F  M++  +
Sbjct: 470 ANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGNEAIATFNEMRDAGI 529

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
           +P+ V+F+  L AC H+GL+++G   F  M+ D++++PK+EHYACMVDLL R G+L +A 
Sbjct: 530 EPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACMVDLLSRTGNLSKAY 589

Query: 407 KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
           KF+  +P  P++ +W ALL  CR++ D+E+A   A  +F+L   +  G YV L+N  A A
Sbjct: 590 KFIETLPIAPDATIWGALLCGCRIYHDIELAEKVAERVFELEP-ENTGYYVLLANIYAEA 648

Query: 467 GKWDSVTELREKMKLRGVLKDTGCSWV 493
            K + V  +REK+  +G+ K+ GCSW+
Sbjct: 649 EKREEVKRMREKIGKKGLRKNPGCSWI 675



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 100/424 (23%), Positives = 186/424 (43%), Gaps = 86/424 (20%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G K+H+ I    V  +  + +KL+  +  CG LK   ++FD + ++ +  +N+M++ Y K
Sbjct: 118 GKKVHSIIKSNSVGVDEALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAK 177

Query: 124 NGQVEESLSLVRKLVS---SGERPD----------------------GYT---------- 148
            G  +ES+ L + +V     G+RP+                      GY           
Sbjct: 178 IGDFKESICLFKIMVEKGIEGKRPESASELFDKLCDRDVISWNSMISGYVSNGLTERGLG 237

Query: 149 -------------FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDS 195
                         + I+     C ++  L  +LG+ VH+  +K   +        L+D 
Sbjct: 238 IYKQMMYLGIDVDLATIISVLVGCANSGTL--SLGKAVHSLAIKSSFERRINFSNTLLDM 295

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEIFRKTVEKDIVVY 251
           Y K G    A  VF+ M E+NV+  TSMI+G+   G+ + A    +++ ++ V+ D+V  
Sbjct: 296 YSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGWSDGAIILLQQMEKEGVKLDVVAI 355

Query: 252 NAMIE--GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309
            +++     S S++  +   +VH  +  N    ++ + +AL+DMYAKCG ++ A  VF  
Sbjct: 356 TSILHACARSGSLDNGK---DVHDYIKANNMASNLFVCNALMDMYAKCGSMEGANSVFST 412

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKG 369
           M  K++ +W +M+                       ++P+  T    L AC     +++G
Sbjct: 413 MVVKDIISWNTMVGE---------------------LKPDSRTMACILPACASLSALERG 451

Query: 370 REIFESMERD-YSMKPKMEHYA-CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
           +EI   + R+ YS      H A  +VDL  + G L  A + + +M    +   W  +++ 
Sbjct: 452 KEIHGYILRNGYSSD---RHVANALVDLYVKCGVLGLA-RLLFDMIPSKDLVSWTVMIAG 507

Query: 428 CRLH 431
             +H
Sbjct: 508 YGMH 511


>gi|87241257|gb|ABD33115.1| SAM (and some other nucleotide) binding motif; Methyltransferase
           small; Tetratricopeptide-like helical [Medicago
           truncatula]
          Length = 971

 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 159/464 (34%), Positives = 246/464 (53%), Gaps = 40/464 (8%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           GL +  H+ K G + +  +    + + L CG L  A  +F++   R L  +N MI G +K
Sbjct: 177 GLGVLGHVLKFGFECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVK 236

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G   E++ + +++ +   RP+  T  MI   S+C +       NLG+  H  I +  ++
Sbjct: 237 RGLAIEAIKIYKEMEAEKVRPNEIT--MIGMISSCSQVQ---DLNLGKEFHCYIKEHGLE 291

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               L  AL+D YVK G+   AR++FD M +K ++  T+M+ G+   GF++ A EI  K 
Sbjct: 292 FTIPLTNALMDMYVKCGELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKI 351

Query: 244 VEKDIVVYNAMIEG--------------YSISIETARK----------------ALEV-- 271
            EK +V +NA+I G              + + I T                   AL+V  
Sbjct: 352 PEKSVVPWNAIISGCVQAKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGI 411

Query: 272 --HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
             H  + ++    DV LG+ALVDMYAKCG I  A +VF+ + Q+N  TWT++I G   +G
Sbjct: 412 WIHHYIERHKLSIDVALGTALVDMYAKCGNIARALQVFEEIPQRNCLTWTAVICGLALHG 471

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
           N   AL  F  M    + P+ +TFLG LSAC H GLV++GR+ F  M   +++ PK++HY
Sbjct: 472 NAQDALSYFSKMIHIGIVPDEITFLGVLSACCHGGLVEEGRKYFSEMSSKFNVSPKLKHY 531

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
           +CMVDLLGRAG LE+A + V  MP   ++ V  AL  +CR++ +V++    A ++ +++ 
Sbjct: 532 SCMVDLLGRAGHLEEAEELVKNMPMAADAAVLGALFFACRVYGNVQIGERTAFKLLEIDP 591

Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            D  G YV L++  + A  W      R+ M  +GV K  GCS V
Sbjct: 592 QD-SGNYVLLASMYSEAKMWKEARSARKLMNDKGVEKTPGCSLV 634



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 193/410 (47%), Gaps = 46/410 (11%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHL--KCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           +I A +  TG+  N   + +L+      +   L Y  ++   + +  + ++N  I GY++
Sbjct: 75  QIQAQMVSTGLIENGFAASRLVAFCALSESKELDYCTRILYRIKELNVFSWNAAIRGYVE 134

Query: 124 NGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +G +E    L ++++  G  +PD +T+ ++LK   CC         LG  V   +LK   
Sbjct: 135 SGDIEGGFMLYKRMLLGGTLKPDNHTYPLLLKG--CCGQ---YSSCLGLGVLGHVLKFGF 189

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR- 241
           + D  ++ A +   +  G+ S A  VF+    ++++   SMI+G + +G   +A +I++ 
Sbjct: 190 ECDIFVHNASITMLLSCGELSVAYDVFNKSRVRDLVTWNSMITGCVKRGLAIEAIKIYKE 249

Query: 242 ---KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
              + V  + +    MI   S  ++      E HC + ++     + L +AL+DMY KCG
Sbjct: 250 MEAEKVRPNEITMIGMISSCS-QVQDLNLGKEFHCYIKEHGLEFTIPLTNALMDMYVKCG 308

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNG----------------------------- 329
           ++  AR +FD+M QK + +WT+M+ GY + G                             
Sbjct: 309 ELLTARVLFDNMAQKTLVSWTTMVLGYARFGFLDVAREILYKIPEKSVVPWNAIISGCVQ 368

Query: 330 --NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
                +AL LF  MQ   ++P+ VT +  LSAC   G +D G  I   +ER + +   + 
Sbjct: 369 AKQGKEALALFHEMQIRTIEPDKVTMVNCLSACSQLGALDVGIWIHHYIER-HKLSIDVA 427

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
               +VD+  + G++ +AL+   E+P++ N   W A++    LH + + A
Sbjct: 428 LGTALVDMYAKCGNIARALQVFEEIPQR-NCLTWTAVICGLALHGNAQDA 476


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 151/471 (32%), Positives = 250/471 (53%), Gaps = 43/471 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGAL--------------------------- 96
           G ++HAH+ K G++ N  +   L+ ++ + G L                           
Sbjct: 147 GKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYAS 206

Query: 97  ----KYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
                 A ++FDE+P R + ++N MI+GY ++G+VEE+++   ++  +   P+  T   +
Sbjct: 207 KGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSV 266

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L A  C +S   L   LG  V + I    + ++  L   L+D YVK G    A  +F+ +
Sbjct: 267 LSA--CAQSGSSL--QLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKI 322

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKA 268
            +KNV+    MI G+      ++A  +FR+ ++ +I    V + +++   + ++      
Sbjct: 323 QDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACA-NLGALDLG 381

Query: 269 LEVHCQLIKNV--FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
             VH  + KN+      V L ++L+DMYAKCG +  A+R+FD M  K++ TW +MI G+ 
Sbjct: 382 KWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFA 441

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM 386
            +G+ + AL LF  M      P+ +TF+G L+AC HAGL+  GR  F SM +DY + PK+
Sbjct: 442 MHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKL 501

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446
            HY CM+DL GRAG  ++A   V  M  KP+  +W +LL +CR+H  +E+A   A  +F+
Sbjct: 502 PHYGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFE 561

Query: 447 LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTES 497
           L   + P AYV LSN  A AG+W+ V ++R ++    + K  GCS +  +S
Sbjct: 562 LEP-ENPSAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDS 611



 Score =  181 bits (459), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 122/411 (29%), Positives = 205/411 (49%), Gaps = 46/411 (11%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKC---GALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +IH+ I KTG+  NT+ ++  LI        G L YA  +F  +       +N+MI G  
Sbjct: 46  QIHSQIIKTGLH-NTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHVIWNHMIRGLS 104

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            +     +L     ++SSG  P+ YTF  I K+ T  R       + G+ VHA +LK  +
Sbjct: 105 SSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRG-----AHEGKQVHAHVLKLGL 159

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           + +  ++T+L++ Y + G+   AR+VFD    ++ +  T++I+G+ S+GF+++A E+F +
Sbjct: 160 EHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFLDEARELFDE 219

Query: 243 TVEKDIVVYNAMIEGYSIS--IETARKALE--VHCQLIKNV------------------- 279
              +D+V +NAMI GY+ S  +E A    E     ++  NV                   
Sbjct: 220 IPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSACAQSGSSLQL 279

Query: 280 ------FFEDVKLGS------ALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
                 + ED  LGS       L+DMY KCG +++A  +F+ +Q KNV +W  MI GY  
Sbjct: 280 GNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVSWNVMIGGYTH 339

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY-SMKPKM 386
                +AL LF  M +  + PN VTFL  L AC + G +D G+ +   ++++  SMK  +
Sbjct: 340 MSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLGKWVHAYVDKNMKSMKNTV 399

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
             +  ++D+  + G L  A K + +     +   W A++S   +H   + A
Sbjct: 400 ALWTSLIDMYAKCGDLAVA-KRIFDCMNTKSLATWNAMISGFAMHGHTDTA 449


>gi|356570919|ref|XP_003553630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g06540-like [Glycine max]
          Length = 622

 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 157/464 (33%), Positives = 242/464 (52%), Gaps = 44/464 (9%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGA--LKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           IHAH+ +T +  +   + +L+   +      L YA ++  ++    L  YN +I G   +
Sbjct: 36  IHAHMLRTHLFFDVFAASRLIAFCIDSTTNLLHYAIRVASQIQNPNLFIYNALIRGCSTS 95

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR-SNVPLPRNLGRMVHAQILKCDVK 183
              E S     K +  G  PD  T   ++KA  C +  N P+    G   H Q +K   +
Sbjct: 96  ENPENSFHYYIKALRFGLLPDNITHPFLVKA--CAQLENAPM----GMQTHGQAIKHGFE 149

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +  +LV  Y   G  + AR VF  M   +V+  T MI+G+   G  + A E+F + 
Sbjct: 150 QDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCGDAKSARELFDRM 209

Query: 244 VEKDIVVYNAMIEGYSIS--IETARKALEV------------------------------ 271
            E+++V ++ MI GY+ +   E A +  E                               
Sbjct: 210 PERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVISSCAHLGALAMGE 269

Query: 272 --HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
             H  +++N    ++ LG+A+VDMYA+CG ++ A  VF+ + +K+V  WT++I G   +G
Sbjct: 270 KAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHG 329

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
              +AL  F  M +    P  +TF   L+AC HAG+V++G EIFESM+RD+ ++P++EHY
Sbjct: 330 YAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFESMKRDHGVEPRLEHY 389

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
            CMVDLLGRAG L +A KFVL+MP KPN+ +W ALL +CR+H +VE+       + ++  
Sbjct: 390 GCMVDLLGRAGKLRKAEKFVLKMPVKPNAPIWRALLGACRIHKNVEVGERVGKILLEMQP 449

Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            +  G YV LSN  A A KW  VT +R+ MK +GV K  G S +
Sbjct: 450 -EYSGHYVLLSNIYARANKWKDVTVMRQMMKDKGVRKPPGYSLI 492



 Score = 92.4 bits (228), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 92/362 (25%), Positives = 158/362 (43%), Gaps = 49/362 (13%)

Query: 158 CCRSNVPLPRNLGRMVHAQILKC----DVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
           CC +     R+L +++HA +L+     DV A   L    +DS        YA  V   + 
Sbjct: 26  CCSN----ARDL-KIIHAHMLRTHLFFDVFAASRLIAFCIDSTT--NLLHYAIRVASQIQ 78

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVE----KDIVVYNAMIEGYSISIETARKAL 269
             N+    ++I G  +    E++   + K +      D + +  +++  +  +E A   +
Sbjct: 79  NPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHPFLVKACA-QLENAPMGM 137

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
           + H Q IK+ F +D  + ++LV MYA  G I+ AR VF  M + +V +WT MI GY + G
Sbjct: 138 QTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRFDVVSWTCMIAGYHRCG 197

Query: 330 NPNQALELFCMMQE----------------CCVQPNYVTF---------------LGALS 358
           +   A ELF  M E                 C +    TF               +G +S
Sbjct: 198 DAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQAEGVVANETVMVGVIS 257

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           +C H G +  G +  E + R+  +   +     +VD+  R G++E+A+    ++PEK + 
Sbjct: 258 SCAHLGALAMGEKAHEYVMRN-KLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEK-DV 315

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
             W AL++   +H   E A    +E+ K     R   + A+    + AG  +   E+ E 
Sbjct: 316 LCWTALIAGLAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACSHAGMVERGLEIFES 375

Query: 479 MK 480
           MK
Sbjct: 376 MK 377



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 93/449 (20%), Positives = 171/449 (38%), Gaps = 107/449 (23%)

Query: 13  SSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYI-----------NSDTP 61
           S+T+  HY +   +Q   P L  Y++L    + +  P    HY            N   P
Sbjct: 62  STTNLLHYAIRVASQIQNPNLFIYNALIRGCSTSENPENSFHYYIKALRFGLLPDNITHP 121

Query: 62  FY------------GLKIHAHITKTGVKPNTNISIKLLILHL------------------ 91
           F             G++ H    K G + +  +   L+ ++                   
Sbjct: 122 FLVKACAQLENAPMGMQTHGQAIKHGFEQDFYVQNSLVHMYASVGDINAARSVFQRMCRF 181

Query: 92  -------------KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLV 138
                        +CG  K A ++FD +P+R L  ++ MI+GY +N   E+++     L 
Sbjct: 182 DVVSWTCMIAGYHRCGDAKSARELFDRMPERNLVTWSTMISGYARNNCFEKAVETFEALQ 241

Query: 139 SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVK 198
           + G   +     M+   S+C          +G   H  +++  +  + +L TA+VD Y +
Sbjct: 242 AEGVVANETV--MVGVISSCAHLGA---LAMGEKAHEYVMRNKLSLNLILGTAVVDMYAR 296

Query: 199 GGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY 258
            G    A +VF+ + EK+V+C T++I+G    G+ E A   F +  +K  V         
Sbjct: 297 CGNVEKAVMVFEQLPEKDVLCWTALIAGLAMHGYAEKALWYFSEMAKKGFVP-------- 348

Query: 259 SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVF-----DHMQQK 313
                             +++ F      +A++   +  G ++    +F     DH  + 
Sbjct: 349 ------------------RDITF------TAVLTACSHAGMVERGLEIFESMKRDHGVEP 384

Query: 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR--- 370
            +  +  M+D  G+ G   +A +    M    V+PN   +   L AC     V+ G    
Sbjct: 385 RLEHYGCMVDLLGRAGKLRKAEKFVLKMP---VKPNAPIWRALLGACRIHKNVEVGERVG 441

Query: 371 EIFESMERDYSMKPKMEHYACMVDLLGRA 399
           +I   M+ +YS      HY  + ++  RA
Sbjct: 442 KILLEMQPEYS-----GHYVLLSNIYARA 465



 Score = 48.9 bits (115), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 34/157 (21%), Positives = 71/157 (45%), Gaps = 4/157 (2%)

Query: 1   MPNLSRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDT 60
           MP  + +  S   S + R+       +TF   LQ    ++N      + S+  H      
Sbjct: 209 MPERNLVTWSTMISGYARNNCFEKAVETFEA-LQAEGVVANETVMVGVISSCAHL---GA 264

Query: 61  PFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120
              G K H ++ +  +  N  +   ++ ++ +CG ++ A  +F++LP++ +  +  +IAG
Sbjct: 265 LAMGEKAHEYVMRNKLSLNLILGTAVVDMYARCGNVEKAVMVFEQLPEKDVLCWTALIAG 324

Query: 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
              +G  E++L    ++   G  P   TF+ +L A +
Sbjct: 325 LAMHGYAEKALWYFSEMAKKGFVPRDITFTAVLTACS 361


>gi|296082284|emb|CBI21289.3| unnamed protein product [Vitis vinifera]
          Length = 581

 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 143/428 (33%), Positives = 241/428 (56%), Gaps = 42/428 (9%)

Query: 102 MFDELPQRT-LSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           +F++   +T + ++N +IA   ++G   E+L     +     +P+  TF   +K+ +   
Sbjct: 31  LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSAL- 89

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
               L  + GR  H Q L    + D  + +ALVD Y K G+   AR +FD +  +N++  
Sbjct: 90  ----LDLHSGRQAHQQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSW 145

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI------SIETARKALE---- 270
           TSMI+G++       A  +F    E+D++ +N++I  Y+       S+E   + ++    
Sbjct: 146 TSMITGYVQNDDAHRALRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEI 205

Query: 271 -------------------------VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARR 305
                                    +H Q+IK     +V +G++++DMY KCGK++ AR+
Sbjct: 206 NYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARK 265

Query: 306 VFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365
            FD M++KNV +W++M+ GYG +G+  +ALE+F  M    V+PNY+TF+  L+AC HAGL
Sbjct: 266 AFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGL 325

Query: 366 VDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
           +++G   F++M  ++ ++P +EHY CMVDLLGRAG L++A   +  M  +P+  VW ALL
Sbjct: 326 LEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFDLIKGMKLRPDFVVWGALL 385

Query: 426 SSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485
            +CR+H +V++  I+A ++F+L+  +  G YV LSN  A AG+W+ V  +R  MK  G++
Sbjct: 386 GACRMHKNVDLGEISARKLFELDPKN-CGYYVLLSNIYADAGRWEDVERMRILMKNSGLV 444

Query: 486 KDTGCSWV 493
           K  G S V
Sbjct: 445 KPPGFSLV 452



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 103/442 (23%), Positives = 179/442 (40%), Gaps = 108/442 (24%)

Query: 12  FSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHI 71
           FSS   R  +L P   TFP  +++  +L +  +                   G + H   
Sbjct: 64  FSSM--RKLSLKPNRSTFPCAIKSCSALLDLHS-------------------GRQAHQQA 102

Query: 72  TKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN------- 124
              G +P+  +S  L+ ++ KCG L+ A  +FDE+  R + ++  MI GY++N       
Sbjct: 103 LIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRAL 162

Query: 125 ------------------------GQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCC 159
                                   G   ES+ +  ++V  GE   +  T S +L A  C 
Sbjct: 163 RVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLA--CA 220

Query: 160 RSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVIC 219
            S     + LG+ +H Q++K  ++++  + T+++D Y K GK   AR  FD M EKNV  
Sbjct: 221 HSG---SQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKS 277

Query: 220 STSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
            ++M++G+   G  ++A E+F          Y   + G   +  T               
Sbjct: 278 WSAMVAGYGMHGHAKEALEVF----------YEMNMAGVKPNYIT--------------- 312

Query: 280 FFEDVKLGSALVDMYAKC---GKIDDARRVFDHMQQK-----NVFTWTSMIDGYGKNGNP 331
                      V + A C   G +++    F  M  +      V  +  M+D  G+ G  
Sbjct: 313 ----------FVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYL 362

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK-MEHYA 390
            +A +L   M+   ++P++V +   L AC     VD G EI  S  + + + PK   +Y 
Sbjct: 363 KEAFDLIKGMK---LRPDFVVWGALLGACRMHKNVDLG-EI--SARKLFELDPKNCGYYV 416

Query: 391 CMVDLLGRAGSLEQALKFVLEM 412
            + ++   AG  E   +  + M
Sbjct: 417 LLSNIYADAGRWEDVERMRILM 438


>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Glycine max]
          Length = 628

 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 154/466 (33%), Positives = 251/466 (53%), Gaps = 20/466 (4%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           + P  ++   + D  F   KIH  + K G++ +  +   L+  +LK   +  A ++F+EL
Sbjct: 134 TFPCVIRACGDDDDGFVVTKIHGLMFKVGLELDVFVGSALVNTYLKFRFVGEAYRVFEEL 193

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P R +  +N M+ G+ + G+ EE+L + R++  +G  P  YT + +L   +     V   
Sbjct: 194 PVRDVVLWNAMVNGFAQIGRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFS-----VMGD 248

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
            + GR VH  + K   ++  V+  AL+D Y K      A  VF+MM E ++    S++S 
Sbjct: 249 FDNGRAVHGFVTKMGYESGVVVSNALIDMYGKCKCVGDALSVFEMMDEIDIFSWNSIMSV 308

Query: 227 FMSQGFVEDAEEIFRKT-----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVF- 280
               G       +F +      V+ D+V    ++   +  +       E+H  ++ N   
Sbjct: 309 HERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLPACT-HLAALMHGREIHGYMVVNGLA 367

Query: 281 -------FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
                  F+DV L +AL+DMYAKCG + DAR VF +M++K+V +W  MI GYG +G   +
Sbjct: 368 KEESHDVFDDVLLNNALMDMYAKCGNMRDARMVFVNMREKDVASWNIMITGYGMHGYGGE 427

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMV 393
           AL++F  M +  + PN ++F+G LSAC HAG+V +G      ME  Y + P +EHY C++
Sbjct: 428 ALDIFSRMCQAQMVPNEISFVGLLSACSHAGMVKEGLGFLSEMESKYGVSPSIEHYTCVI 487

Query: 394 DLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRP 453
           D+L RAG L +A   VL MP K +   W +LL++CRLH+D ++A +AA+++ +L   D  
Sbjct: 488 DMLCRAGQLMEAYDLVLTMPFKADPVGWRSLLAACRLHNDTDLAEVAASKVIELEP-DHC 546

Query: 454 GAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           G YV +SN     G+++ V E R  MK + V K  GCSW+   +G+
Sbjct: 547 GNYVLMSNVYGVVGRYEEVLEWRYTMKQQNVKKRPGCSWIELVNGV 592



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/383 (25%), Positives = 183/383 (47%), Gaps = 23/383 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP---QRTLSAYNYMIAG 120
           G ++H H+ K     +      L+ ++ KC  + ++ ++F+  P    + + AYN +IAG
Sbjct: 48  GKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVFN-FPTHHNKNVFAYNALIAG 106

Query: 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
           +L N   + +L+L  ++   G  PD +TF  +++A         + +     +H  + K 
Sbjct: 107 FLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDDDDGFVVTK-----IHGLMFKV 161

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
            ++ D  + +ALV++Y+K      A  VF+ +  ++V+   +M++GF   G  E+A  +F
Sbjct: 162 GLELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQIGRFEEALGVF 221

Query: 241 RKTVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFEDVKLGSALVDMYAK 296
           R+     +V     + G  +SI +     +    VH  + K  +   V + +AL+DMY K
Sbjct: 222 RRMGGNGVVPCRYTVTGV-LSIFSVMGDFDNGRAVHGFVTKMGYESGVVVSNALIDMYGK 280

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF-CMMQECCVQPNYVTFLG 355
           C  + DA  VF+ M + ++F+W S++  + + G+    L LF  MM    VQP+ VT   
Sbjct: 281 CKCVGDALSVFEMMDEIDIFSWNSIMSVHERCGDHYGTLRLFDRMMGSSRVQPDLVTVTT 340

Query: 356 ALSACGHAGLVDKGREIFESM-------ERDYSMKPKMEHYACMVDLLGRAGSLEQALKF 408
            L AC H   +  GREI   M       E  + +   +     ++D+  + G++  A   
Sbjct: 341 VLPACTHLAALMHGREIHGYMVVNGLAKEESHDVFDDVLLNNALMDMYAKCGNMRDARMV 400

Query: 409 VLEMPEKPNSDVWAALLSSCRLH 431
            + M EK  +  W  +++   +H
Sbjct: 401 FVNMREKDVAS-WNIMITGYGMH 422



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/97 (37%), Positives = 55/97 (56%), Gaps = 2/97 (2%)

Query: 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH--MQQKNVFTWTSMIDG 324
           K  E+H  L+KN FF      ++L++MY+KC  ID + RVF+      KNVF + ++I G
Sbjct: 47  KGKELHTHLLKNAFFGSPLAITSLINMYSKCSLIDHSLRVFNFPTHHNKNVFAYNALIAG 106

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           +  N  P +AL L+  M+   + P+  TF   + ACG
Sbjct: 107 FLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACG 143


>gi|188509980|gb|ACD56662.1| putative pentatricopeptide [Gossypium arboreum]
          Length = 805

 Score =  258 bits (659), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 148/461 (32%), Positives = 247/461 (53%), Gaps = 50/461 (10%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
            ++ S L    NS T   G  +H+   K+  +   N S  LL ++ KCG L  A ++F++
Sbjct: 252 ATIISVLVGCANSGTLSLGKAVHSLAIKSSFERRINFSNTLLDMYSKCGDLDGALRVFEK 311

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           + +R + ++  MIAGY ++G+ + ++ L++++   G + D    + IL A  C RS    
Sbjct: 312 MGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAITSILHA--CARSG--- 366

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
             + G+ VH  I   +++++  +  AL+D Y K G                         
Sbjct: 367 SLDNGKDVHDYIKANNMESNLFVCNALMDMYAKCGS------------------------ 402

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS-------------ISIETARKALEVH 272
                  +E A  +F   V KDI+ +N MI                  S+    +  E+H
Sbjct: 403 -------MEAANSVFSTMVVKDIISWNTMIGELKPDSRTMACVLPACASLSALERGKEIH 455

Query: 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPN 332
             +++N +  D  + +ALVD+Y KCG +  AR +FD +  K++ +WT MI GYG +G  N
Sbjct: 456 GYILRNGYSSDRHVANALVDLYVKCGVLGLARLLFDMIPSKDLVSWTVMIAGYGMHGYGN 515

Query: 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACM 392
           +A+  F  M++  ++P+ V+F+  L AC H+GL+++G   F  M+ D++++PK+EHYACM
Sbjct: 516 EAIATFNEMRDAGIEPDEVSFISILYACSHSGLLEQGWRFFYIMKNDFNIEPKLEHYACM 575

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR 452
           VDLL R G+L +A +F+  +P  P++ +W ALL  CR + D+E+A   A  +F+L   + 
Sbjct: 576 VDLLSRTGNLSKAYEFMETLPIAPDATIWGALLCGCRNYHDIELAEKVAERVFELEP-EN 634

Query: 453 PGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            G YV L+N  A A KW+ V  LREK+  +G+ K+ GCSW+
Sbjct: 635 TGYYVLLANIYAEAEKWEEVKRLREKIGKQGLRKNPGCSWI 675



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 101/424 (23%), Positives = 186/424 (43%), Gaps = 86/424 (20%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G K+H+ I    V  +  + +KL+  +  CG LK   ++FD + ++ +  +N+M++ Y K
Sbjct: 118 GKKVHSIIKSNSVGVDGALGLKLVSFYATCGDLKEGRRVFDTMEKKNVYLWNFMVSEYAK 177

Query: 124 NGQVEESLSLVRKLVS---SGERPD----------------------GYT---------- 148
            G  +ES+ L + +V     G+RP+                      GY           
Sbjct: 178 IGDFKESICLFKIMVEKGIEGKRPESAFELFDKLCDRDVISWNSMISGYVSNGLTERGLG 237

Query: 149 -------------FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDS 195
                         + I+     C ++  L  +LG+ VH+  +K   +        L+D 
Sbjct: 238 IYKQMMYLGIDVDLATIISVLVGCANSGTL--SLGKAVHSLAIKSSFERRINFSNTLLDM 295

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFM----SQGFVEDAEEIFRKTVEKDIVVY 251
           Y K G    A  VF+ M E+NV+  TSMI+G+     S G ++  +++ ++ V+ D+V  
Sbjct: 296 YSKCGDLDGALRVFEKMGERNVVSWTSMIAGYTRDGRSDGAIKLLQQMEKEGVKLDVVAI 355

Query: 252 NAMIE--GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309
            +++     S S++  +   +VH  +  N    ++ + +AL+DMYAKCG ++ A  VF  
Sbjct: 356 TSILHACARSGSLDNGK---DVHDYIKANNMESNLFVCNALMDMYAKCGSMEAANSVFST 412

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKG 369
           M  K++ +W +MI                       ++P+  T    L AC     +++G
Sbjct: 413 MVVKDIISWNTMIGE---------------------LKPDSRTMACVLPACASLSALERG 451

Query: 370 REIFESMERD-YSMKPKMEHYA-CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
           +EI   + R+ YS      H A  +VDL  + G L  A + + +M    +   W  +++ 
Sbjct: 452 KEIHGYILRNGYSSD---RHVANALVDLYVKCGVLGLA-RLLFDMIPSKDLVSWTVMIAG 507

Query: 428 CRLH 431
             +H
Sbjct: 508 YGMH 511


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  258 bits (659), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 154/485 (31%), Positives = 254/485 (52%), Gaps = 53/485 (10%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H    ++G+  +  +   ++ ++ KCG ++ A ++F  +  + + ++N M+ GY +
Sbjct: 383 GRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQ 442

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMIL-----KASTC-------------CRSNVPL 165
            G++E +LSL  ++       D  T++ ++     +   C              R NV  
Sbjct: 443 AGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGSRPNVVT 502

Query: 166 PRNL-------GRMVHAQILKC------------DVKADDV-LYTALVDSYVKGGKTSYA 205
             +L       G ++H +   C            D  ADD+ +   L+D Y K   T  A
Sbjct: 503 LVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQSTEVA 562

Query: 206 RIVFDMM--LEKNVICSTSMISGFMSQGFVEDAEEIFR------KTVE-KDIVVYNAMIE 256
           R +FD +   +++V+  T MI G+   G   +A ++F       K+++  D  +  A++ 
Sbjct: 563 RKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLSCALVA 622

Query: 257 GYSISIETARKALEVHCQLIKNVFFEDVKL--GSALVDMYAKCGKIDDARRVFDHMQQKN 314
                +   R   +VH  +++N F+  V L   + L+DMY+K G +D A+ VFD+M Q+N
Sbjct: 623 --CARLAALRFGRQVHAYVLRN-FYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQRN 679

Query: 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374
             +WTS++ GYG +G    AL +F  M++  + P+ +TFL  L AC H+G+VD G   F 
Sbjct: 680 AVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINFFN 739

Query: 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDV 434
            M +D+ + P  EHYACMVDL GRAG L +A+K + EMP +P   VW ALLS+CRLH +V
Sbjct: 740 RMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACRLHSNV 799

Query: 435 EMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVG 494
           E+   AAN + +L + +  G+Y  LSN  A A +W  V  +R  MK  G+ K  GCSW+ 
Sbjct: 800 ELGEFAANRLLELESGN-DGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGCSWIQ 858

Query: 495 TESGL 499
              G+
Sbjct: 859 GRKGV 863



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 106/440 (24%), Positives = 192/440 (43%), Gaps = 58/440 (13%)

Query: 81  NISIKLLILHLKCGALKYAGQMFDELPQRTLSAY--NYMIAGYLKNGQVEESLSLVRKLV 138
           +++  L+  ++   +  YA  + + LP    S +  N +I   L  G   +  +L R++ 
Sbjct: 192 HLATNLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMK 251

Query: 139 SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVK 198
           S G  PD YTF  + KA  C   +     +LG  +HA + +    ++  +  A+V  Y K
Sbjct: 252 SLGWTPDHYTFPFVFKA--CANLSS---LSLGASLHATVSRSGFASNVFVCNAVVSMYGK 306

Query: 199 GGKTSYARIVFDMMLEKNV---ICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVY 251
            G   +A  +FD +  + +   +   S++S +M       A  +F K   + +    V+ 
Sbjct: 307 CGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVIS 366

Query: 252 NAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311
              I     S+  + +  +VH   I++   +DV +G+A+VDMYAKCGK+++A +VF  M+
Sbjct: 367 LVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKCGKMEEANKVFQRMK 426

Query: 312 QK-----------------------------------NVFTWTSMIDGYGKNGNPNQALE 336
            K                                   +V TWT++I GY + G   +AL+
Sbjct: 427 FKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALD 486

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE-------IFESMERDYSMKPKMEHY 389
           +F  M +C  +PN VT +  LSAC   G +  G+E          +++        ++  
Sbjct: 487 VFRQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVI 546

Query: 390 ACMVDLLGRAGSLEQALK-FVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
             ++D+  +  S E A K F    P+  +   W  ++     H D   A    + +FK++
Sbjct: 547 NGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMD 606

Query: 449 ANDRPGAYVALSNTLAAAGK 468
            + +P  +  LS  L A  +
Sbjct: 607 KSIKPNDFT-LSCALVACAR 625



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 31/121 (25%), Positives = 60/121 (49%), Gaps = 10/121 (8%)

Query: 38  SLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLI-LHLKCGAL 96
           +LS  L A +  +AL+         +G ++HA++ +             LI ++ K G +
Sbjct: 615 TLSCALVACARLAALR---------FGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDV 665

Query: 97  KYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAS 156
             A  +FD +PQR   ++  ++ GY  +G+ E++L +  ++      PDG TF ++L A 
Sbjct: 666 DTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYAC 725

Query: 157 T 157
           +
Sbjct: 726 S 726


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  258 bits (659), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 154/466 (33%), Positives = 253/466 (54%), Gaps = 24/466 (5%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +L SA      S+    G  +H  + K G   +T++   ++ ++  C  +  A ++F+ +
Sbjct: 167 ALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGI 226

Query: 107 P--QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE---RPDGYTFSMILK--ASTCC 159
           P  QR + ++N +I+G+  NG+ E +L     +VS G     P+  T   +LK  A   C
Sbjct: 227 PIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGC 286

Query: 160 RSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVIC 219
                         H+ +L   V  D V+ TAL+D + + G  + AR +FD +  KNV+C
Sbjct: 287 VETSSWVHEYISSRHSSLL---VAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVC 343

Query: 220 STSMISGFMSQGFVEDAEEIFRKT----------VEKDIVVYNAMIEGYSISIETARKAL 269
            ++MI+G+      E+A  +FR+           V+ + V   ++I   S  +  +R A 
Sbjct: 344 WSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACS-RLGASRSAS 402

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--KNVFTWTSMIDGYGK 327
            +H   +     +D ++ SAL+DM AKCG I+  R+VF  M +  + V +W+SMI   G 
Sbjct: 403 MIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGI 462

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           +G   +ALELF  M+    +PN +T++  LSAC HAGLV++G+  F SME+DY M P  +
Sbjct: 463 HGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGK 522

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           HYAC+VDLLGRAG L++A   +L MP K +  +W +LL++C LH + ++  I   +I  L
Sbjct: 523 HYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSL 582

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           ++N   G +V L+N    AG+WD V  +R +++  G+ K  G S++
Sbjct: 583 DSNS-VGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFI 627



 Score =  122 bits (306), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 211/465 (45%), Gaps = 57/465 (12%)

Query: 28  TFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLL 87
           TF  ++Q +   SN  T    P+ L+           L++HA++T+ G+  +   +  L+
Sbjct: 38  TFFTRMQAHAVPSNNFT---FPALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALV 94

Query: 88  ILHLKCGALKYAGQMFDELPQRTLSAYNY--MIAGYLKNGQVEESLSLVRKLV----SSG 141
             + KCG   YA Q+FDE+P+ ++   ++  +I+ Y  NG V+E+     ++       G
Sbjct: 95  DAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFKAFGRMRWMRGWDG 154

Query: 142 ERPDGY-TFSMILKASTC---CRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYV 197
               G    S+    S C   C SN  L R  G  VH  ++K        L  ++V  Y 
Sbjct: 155 SECCGVDVVSLGALVSACAVGCGSNC-LRR--GSAVHGLVVKYGFGVSTHLGNSMVHMYS 211

Query: 198 KGGKTSYARIVFDM--MLEKNVICSTSMISGFMSQGFVEDAEEIFR-------KTVEKDI 248
                  A  VF+   + +++V+   S+ISGF   G  E A   F          VE + 
Sbjct: 212 ACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNR 271

Query: 249 VVYNAMIEGYSI--SIETARKALEV----HCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
           V   A+++  +    +ET+    E     H  L+     +DV + +AL+DM+A+CG +  
Sbjct: 272 VTVIALLKSCAELGCVETSSWVHEYISSRHSSLL---VAKDVVVLTALLDMHARCGNLAL 328

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF-CMMQE-----CCVQPNYVTFLGA 356
           AR +FD ++ KNV  W++MI GY +   P +AL LF  M+ E       V+PN VT +  
Sbjct: 329 AREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSV 388

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYA----CMVDLLGRAGSLEQALKFVLEM 412
           ++AC   G          SM   Y++   ++  A     ++D+  + G +E   +   EM
Sbjct: 389 IAACSRLGASRSA-----SMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEM 443

Query: 413 PEKPNSDV-WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456
            E   + V W++++ +  +H + + A        +L +  R G Y
Sbjct: 444 DESTRTVVSWSSMIGAEGIHGEGKRA-------LELFSEMRTGGY 481



 Score = 43.9 bits (102), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 54/132 (40%), Gaps = 8/132 (6%)

Query: 300 IDDARRVFD-HMQQKNVFTWTSMIDGYGKNG--NPNQALELFCMMQECCVQPNYVTFLGA 356
           I   RR +   +  K+ F W S+I    KN   NP  AL  F  MQ   V  N  TF   
Sbjct: 2   IGKTRRWYHCSISHKDTFHWNSLI---AKNATQNPQTALTFFTRMQAHAVPSNNFTFPAL 58

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           L AC     +    ++   + R   +       A +VD  G+ G    A +   EMPE  
Sbjct: 59  LKACAALRRLLPTLQVHAYLTR-LGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGS 117

Query: 417 NSDV-WAALLSS 427
              V W AL+S+
Sbjct: 118 VDVVSWTALISA 129


>gi|147833186|emb|CAN68635.1| hypothetical protein VITISV_030802 [Vitis vinifera]
          Length = 767

 Score =  258 bits (659), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 154/466 (33%), Positives = 253/466 (54%), Gaps = 24/466 (5%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +L SA      S+    G  +H  + K G   +T++   ++ ++  C  +  A ++F+ +
Sbjct: 167 ALVSACAVGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGI 226

Query: 107 P--QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE---RPDGYTFSMILK--ASTCC 159
           P  QR + ++N +I+G+  NG+ E +L     +VS G     P+  T   +LK  A   C
Sbjct: 227 PIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGC 286

Query: 160 RSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVIC 219
                         H+ +L   V  D V+ TAL+D + + G  + AR +FD +  KNV+C
Sbjct: 287 VETSSWVHEYISSRHSSLL---VAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVC 343

Query: 220 STSMISGFMSQGFVEDAEEIFRKT----------VEKDIVVYNAMIEGYSISIETARKAL 269
            ++MI+G+      E+A  +FR+           V+ + V   ++I   S  +  +R A 
Sbjct: 344 WSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACS-RLGASRSAS 402

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--KNVFTWTSMIDGYGK 327
            +H   +     +D ++ SAL+DM AKCG I+  R+VF  M +  + V +W+SMI   G 
Sbjct: 403 MIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGI 462

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           +G   +ALELF  M+    +PN +T++  LSAC HAGLV++G+  F SME+DY M P  +
Sbjct: 463 HGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGK 522

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           HYAC+VDLLGRAG L++A   +L MP K +  +W +LL++C LH + ++  I   +I  L
Sbjct: 523 HYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLAACHLHGNCKLGEIVEKKILSL 582

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           ++N   G +V L+N    AG+WD V  +R +++  G+ K  G S++
Sbjct: 583 DSNS-VGHHVLLANMYEDAGRWDDVVRMRVELRRSGLRKIPGQSFI 627



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 123/465 (26%), Positives = 211/465 (45%), Gaps = 57/465 (12%)

Query: 28  TFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLL 87
           TF  ++Q +   SN  T    P+ L+           L++HA++T+ G+  +   +  L+
Sbjct: 38  TFFTRMQAHAVPSNNFT---FPALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALV 94

Query: 88  ILHLKCGALKYAGQMFDELPQRTLSAYNY--MIAGYLKNGQVEESLSLVRKLV----SSG 141
             + KCG   YA Q+FDE+P+ ++   ++  +I+ Y  NG V+E+     ++       G
Sbjct: 95  DAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNGCVDEAFXAFGRMRWMRGWDG 154

Query: 142 ERPDGY-TFSMILKASTC---CRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYV 197
               G    S+    S C   C SN  L R  G  VH  ++K        L  ++V  Y 
Sbjct: 155 SECCGVDVVSLGALVSACAVGCGSNC-LRR--GSAVHGLVVKYGFGVSTHLGNSMVHMYS 211

Query: 198 KGGKTSYARIVFDM--MLEKNVICSTSMISGFMSQGFVEDAEEIFR-------KTVEKDI 248
                  A  VF+   + +++V+   S+ISGF   G  E A   F          VE + 
Sbjct: 212 ACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFXLNGEAERALRTFEDMVSEGTSAVEPNR 271

Query: 249 VVYNAMIEGYSI--SIETARKALEV----HCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
           V   A+++  +    +ET+    E     H  L+     +DV + +AL+DM+A+CG +  
Sbjct: 272 VTVIALLKSCAELGCVETSSWVHEYISSRHSSLL---VAKDVVVLTALLDMHARCGNLAL 328

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF-CMMQE-----CCVQPNYVTFLGA 356
           AR +FD ++ KNV  W++MI GY +   P +AL LF  M+ E       V+PN VT +  
Sbjct: 329 AREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSV 388

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYA----CMVDLLGRAGSLEQALKFVLEM 412
           ++AC   G          SM   Y++   ++  A     ++D+  + G +E   +   EM
Sbjct: 389 IAACSRLGASRSA-----SMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEM 443

Query: 413 PEKPNSDV-WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456
            E   + V W++++ +  +H + + A        +L +  R G Y
Sbjct: 444 DESTRTVVSWSSMIGAEGIHGEGKRA-------LELFSEMRTGGY 481



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 40/132 (30%), Positives = 54/132 (40%), Gaps = 8/132 (6%)

Query: 300 IDDARRVFD-HMQQKNVFTWTSMIDGYGKNG--NPNQALELFCMMQECCVQPNYVTFLGA 356
           I   RR +   +  K+ F W S+I    KN   NP  AL  F  MQ   V  N  TF   
Sbjct: 2   IGKTRRWYXCSISHKDTFHWNSLI---AKNATQNPQTALTFFTRMQAHAVPSNNFTFPAL 58

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           L AC     +    ++   + R   +       A +VD  G+ G    A +   EMPE  
Sbjct: 59  LKACAALRRLLPTLQVHAYLTR-LGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGS 117

Query: 417 NSDV-WAALLSS 427
              V W AL+S+
Sbjct: 118 VDVVSWTALISA 129


>gi|296084064|emb|CBI24452.3| unnamed protein product [Vitis vinifera]
          Length = 503

 Score =  258 bits (658), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 151/436 (34%), Positives = 240/436 (55%), Gaps = 16/436 (3%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKC--GALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           IHA I   G + N  +  KL+  + +C    ++ A ++FD LP R +  +N +I GY   
Sbjct: 26  IHAQIIIGGFEENPFLGAKLVGKYAQCYESNIEDARKVFDCLPDRDVFVWNTIIQGYANL 85

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
           G   E+L++   +  SG   + YTF  +LKA    +         G+ +H  ++K  +  
Sbjct: 86  GPFMEALNIYEYMRCSGVAANRYTFPFVLKACGAMKDG-----KKGQAIHGHVVKHGLDL 140

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
           D  +  ALV  Y K  +   +R VFDM+ EK+++   SMISG+   G  +DA  +F   +
Sbjct: 141 DLFVGNALVAFYAKCNEIGASRRVFDMISEKDIVTWNSMISGYAINGCADDALVLFHNML 200

Query: 245 EKDIVVYNAMIEGYSISIETA-------RKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           +       A      ++I  A       ++ L +H  +IK+    D  LGS L+ MYA C
Sbjct: 201 QVQGDTVYAPDSATLVAILPACAQAAAIQEGLWIHSYVIKSGIELDAALGSGLIAMYANC 260

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G ++ AR VFD +  KN+  W ++I  YG +G+ ++AL++F  + +  + P+ V FL  L
Sbjct: 261 GLLNSARDVFDRIDDKNIVVWNAIIRCYGMHGHADEALKMFSGLIDSGLHPDGVIFLCLL 320

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           SA  HAG+V +G E+FE M  DY ++   EHYA +VD+LGRAG L +A++FV  MP +P 
Sbjct: 321 SAFSHAGMVAEGMELFEKM-GDYGVEKSSEHYASVVDILGRAGFLHEAVEFVKNMPVQPG 379

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
            DV+ ALL +CR+H+++E+A   A ++F L+  D  G Y+ L      AGKW++   LR+
Sbjct: 380 KDVYGALLGACRIHNNIELAEEIAEKLFVLDP-DNAGRYIILVKMYEDAGKWENAARLRK 438

Query: 478 KMKLRGVLKDTGCSWV 493
            +K + + K  GCS +
Sbjct: 439 ALKEKNIRKPLGCSAI 454



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 154/361 (42%), Gaps = 52/361 (14%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH H+ K G+  +  +   L+  + KC  +  + ++FD + ++ +  +N MI+GY  
Sbjct: 126 GQAIHGHVVKHGLDLDLFVGNALVAFYAKCNEIGASRRVFDMISEKDIVTWNSMISGYAI 185

Query: 124 NGQVEESLSLVRKLVS-SGER---PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           NG  +++L L   ++   G+    PD  T   IL A   C     +   L   +H+ ++K
Sbjct: 186 NGCADDALVLFHNMLQVQGDTVYAPDSATLVAILPA---CAQAAAIQEGL--WIHSYVIK 240

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
             ++ D  L + L+  Y   G  + AR VFD + +KN+                      
Sbjct: 241 SGIELDAALGSGLIAMYANCGLLNSARDVFDRIDDKNI---------------------- 278

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
                    VV+NA+I  Y +    A +AL++   LI +    D  +   L+  ++  G 
Sbjct: 279 ---------VVWNAIIRCYGMH-GHADEALKMFSGLIDSGLHPDGVIFLCLLSAFSHAGM 328

Query: 300 IDDARRVFDHMQ----QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           + +   +F+ M     +K+   + S++D  G+ G  ++A+E    M    VQP    +  
Sbjct: 329 VAEGMELFEKMGDYGVEKSSEHYASVVDILGRAGFLHEAVEFVKNMP---VQPGKDVYGA 385

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
            L AC     ++   EI E +   + + P     Y  +V +   AG  E A +    + E
Sbjct: 386 LLGACRIHNNIELAEEIAEKL---FVLDPDNAGRYIILVKMYEDAGKWENAARLRKALKE 442

Query: 415 K 415
           K
Sbjct: 443 K 443


>gi|334185563|ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g23330
 gi|11994318|dbj|BAB02277.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643232|gb|AEE76753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  258 bits (658), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 130/397 (32%), Positives = 239/397 (60%), Gaps = 11/397 (2%)

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           ++F+ +P++ + +YN +IAGY ++G  E++L +VR++ ++  +PD +T S +L   +   
Sbjct: 197 RVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFS--- 253

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
             V + +  G+ +H  +++  + +D  + ++LVD Y K  +   +  VF  +  ++ I  
Sbjct: 254 EYVDVIK--GKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISW 311

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLI 276
            S+++G++  G   +A  +FR+ V   +    V ++++I   +  + T     ++H  ++
Sbjct: 312 NSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACA-HLATLHLGKQLHGYVL 370

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           +  F  ++ + SALVDMY+KCG I  AR++FD M   +  +WT++I G+  +G+ ++A+ 
Sbjct: 371 RGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVS 430

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           LF  M+   V+PN V F+  L+AC H GLVD+    F SM + Y +  ++EHYA + DLL
Sbjct: 431 LFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLL 490

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456
           GRAG LE+A  F+ +M  +P   VW+ LLSSC +H ++E+A   A +IF +++ +  GAY
Sbjct: 491 GRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENM-GAY 549

Query: 457 VALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           V + N  A+ G+W  + +LR +M+ +G+ K   CSW+
Sbjct: 550 VLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWI 586



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 117/502 (23%), Positives = 209/502 (41%), Gaps = 87/502 (17%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++HA   +T    +T+ SI ++ ++     L  A  +F  L    + A+  +I  +    
Sbjct: 26  QLHAQFIRTQSLSHTSASI-VISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQS 84

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              ++L+   ++ +SG  PD   F  +LK+ T     + +    G  VH  I++  +  D
Sbjct: 85  LFSKALASFVEMRASGRCPDHNVFPSVLKSCT-----MMMDLRFGESVHGFIVRLGMDCD 139

Query: 186 DVLYTALVDSYVK----GGKTSYA--------------------------------RIVF 209
                AL++ Y K    G K S                                  R VF
Sbjct: 140 LYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVF 199

Query: 210 DMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETA 265
           ++M  K+V+   ++I+G+   G  EDA  + R+     ++ D    ++++  +S  ++  
Sbjct: 200 EVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVI 259

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
            K  E+H  +I+     DV +GS+LVDMYAK  +I+D+ RVF  +  ++  +W S++ GY
Sbjct: 260 -KGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGY 318

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
            +NG  N+AL LF  M    V+P  V F   + AC H   +  G+++   + R       
Sbjct: 319 VQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRG-GFGSN 377

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEM--------------------------------- 412
           +   + +VD+  + G+++ A K    M                                 
Sbjct: 378 IFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKR 437

Query: 413 -PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL-NANDRPGAYVALSNTLAAAGKWD 470
              KPN   + A+L++C     V+ A    N + K+   N     Y A+++ L  AGK +
Sbjct: 438 QGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLE 497

Query: 471 SVTELREKMKLRGVLKDTGCSW 492
                  KM     ++ TG  W
Sbjct: 498 EAYNFISKM----CVEPTGSVW 515



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/386 (22%), Positives = 169/386 (43%), Gaps = 62/386 (16%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           +  T +S+      Y++      G +IH ++ + G+  +  I   L+ ++ K   ++ + 
Sbjct: 241 DSFTLSSVLPIFSEYVD---VIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSE 297

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           ++F  L  R   ++N ++AGY++NG+  E+L L R++V++  +P    FS ++ A   C 
Sbjct: 298 RVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPA---CA 354

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
               L  +LG+ +H  +L+    ++  + +ALVD Y K G    AR +FD M   + +  
Sbjct: 355 HLATL--HLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSW 412

Query: 221 TSMISGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLI 276
           T++I G    G   +A    EE+ R+ V+ + V + A++   S                 
Sbjct: 413 TAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACS----------------- 455

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-----KNVFTWTSMIDGYGKNGNP 331
                                G +D+A   F+ M +     + +  + ++ D  G+ G  
Sbjct: 456 -------------------HVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKL 496

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM-ERDYSMKPK-MEHY 389
            +A      M   CV+P    +   LS+C     V K  E+ E + E+ +++  + M  Y
Sbjct: 497 EEAYNFISKM---CVEPTGSVWSTLLSSCS----VHKNLELAEKVAEKIFTVDSENMGAY 549

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEK 415
             M ++    G  ++  K  L M +K
Sbjct: 550 VLMCNMYASNGRWKEMAKLRLRMRKK 575


>gi|242041565|ref|XP_002468177.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
 gi|241922031|gb|EER95175.1| hypothetical protein SORBIDRAFT_01g041070 [Sorghum bicolor]
          Length = 640

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 143/436 (32%), Positives = 243/436 (55%), Gaps = 12/436 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP-QRTLSAYNYMIAGYL 122
           G ++HA +  +G+  +  ++ +L+ L+  CG +  A ++FDE+P Q  +  +N +I  Y 
Sbjct: 82  GRQLHARLLVSGLGLDAVLATRLVDLYASCGLVSVARRLFDEMPNQGNVFLWNVLIRAYA 141

Query: 123 KNGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           ++G  E ++ L R++++ G   PD +T+  +LKA   C + + L    GR VH ++++  
Sbjct: 142 RDGPREAAIELYREMLACGSMEPDNFTYPPVLKA---CAALLDL--GAGREVHDRVMRTS 196

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
             AD  +   L+D Y K G    A  VFD    ++ +   SMI+     G   +A  + R
Sbjct: 197 WAADVFVCAGLIDMYAKCGCVDEAWAVFDSTTVRDAVVWNSMIAACGQNGRPAEALALCR 256

Query: 242 KTVEKDI---VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
               + I   +V        +       +  E+H    +  F    KL ++L+DMYAK G
Sbjct: 257 NMAAEGIAPTIVTLVSAISAAADAGALPRGRELHGYGWRRGFGSQDKLKTSLLDMYAKSG 316

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ-ECCVQPNYVTFLGAL 357
            +  AR +FD +  + + +W +MI G+G +G+ + A ELF  M+ E  V P+++TF+G L
Sbjct: 317 WVTVARVLFDQLFHRELISWNAMICGFGMHGHADHACELFRRMRNEAQVMPDHITFVGVL 376

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           SAC H G+V + +E+F+ M   YS+KP ++HY C+VD+LG +G  ++A   +  M  KP+
Sbjct: 377 SACNHGGMVQEAKEVFDLMVTVYSIKPMVQHYTCLVDVLGHSGRFKEASDVIKGMLVKPD 436

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
           S +W ALL+ C++H +VE+A +A +++ +L   D  G YV LSN  A +GKW+    +R+
Sbjct: 437 SGIWGALLNGCKIHKNVELAELALHKLIELEPED-AGNYVLLSNIYAQSGKWEEAARVRK 495

Query: 478 KMKLRGVLKDTGCSWV 493
            M  RG+ K   CSW+
Sbjct: 496 LMTNRGLKKIIACSWI 511


>gi|108863919|gb|ABG22332.1| vegetative storage protein, putative [Oryza sativa Japonica Group]
          Length = 645

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 158/478 (33%), Positives = 246/478 (51%), Gaps = 31/478 (6%)

Query: 24  PPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNIS 83
           P + T P  L++   L +PL A                  G ++HA   K     N ++ 
Sbjct: 68  PSHLTIPIALKSASRLPHPLRA------------------GEQLHARSLKLPSHTNPHVL 109

Query: 84  IKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGER 143
             LL L+ KCG L  A ++FDE+P  +   +  +I  Y+  G + E++ + R   ++G R
Sbjct: 110 TSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMR 169

Query: 144 PDGYTFSMILKASTCCR-SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKT 202
           PD +T   +L A  C R +++     + R    +     V     + TA VD YVK G+ 
Sbjct: 170 PDSFTAVRVLTA--CARIADLATGETVWRAAEQE----GVAQSVFVATAAVDLYVKCGEM 223

Query: 203 SYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISI 262
           + AR VFD M  K+ +   +M+ G+ S G   +A ++F     + +      + G ++S 
Sbjct: 224 AKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAG-ALSA 282

Query: 263 ETARKALEVHCQLIKNV----FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTW 318
            T   AL++  Q I+ V    F ++  LG+AL+DMYAKCG   +A  VF  M++K++  W
Sbjct: 283 CTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVW 342

Query: 319 TSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER 378
            +MI G G  G+   A  L   M++  V+ N  TF+G L +C H GL+  GR  F +M +
Sbjct: 343 NAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTK 402

Query: 379 DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMAN 438
            Y + P++EHY CMVDLL RAG L++A + V +MP   N+ +  ALL  C++H + E+A 
Sbjct: 403 LYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAE 462

Query: 439 IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
               ++  L   +  G YV LSN  +  G+W+   +LR  MK +GV K   CSWV  E
Sbjct: 463 HVLKQLILLEPWN-SGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFE 519


>gi|224065851|ref|XP_002301973.1| predicted protein [Populus trichocarpa]
 gi|222843699|gb|EEE81246.1| predicted protein [Populus trichocarpa]
          Length = 716

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 156/491 (31%), Positives = 261/491 (53%), Gaps = 50/491 (10%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L +  L S L  Y+  D     LK   ++     +P    S  L+    + G +K   ++
Sbjct: 107 LDSVVLSSLLHMYVQFDH----LKDARNVFDKLPQPGVVTSSALISRFARKGRVKETKEL 162

Query: 103 F----DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
           F    D   +  L ++N MI+G+ ++G   +++ + + +   G +PDG + S +L A   
Sbjct: 163 FYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEGLKPDGTSVSSVLPAVG- 221

Query: 159 CRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI 218
              ++PL   +G  +H  ++K  +  D  + +AL+D Y K    S    VF+ M E +V 
Sbjct: 222 -DLDMPL---MGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMSGVFNEMDEVDVG 277

Query: 219 CSTSMISGFMSQGFVEDAEEIFR--KTVEKDIVVYNAMIEGYS--------------ISI 262
              ++++G    G V++A E+F+  K ++ ++V + +MI   S              + I
Sbjct: 278 ACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKDMEALELFREMQI 337

Query: 263 ETAR--------------------KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
           E  +                         HC  ++N  F DV +GSAL+DMYAKCG++  
Sbjct: 338 EGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRNGIFNDVYVGSALIDMYAKCGRMLA 397

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           +R  FD M  +N+ +W S++ GY  +G   +A+ +F +MQ C  +P++V+F   LSAC  
Sbjct: 398 SRLCFDMMPNRNLVSWNSLMAGYAMHGKTFEAINIFELMQRCGQKPDHVSFTCVLSACTQ 457

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
            GL ++G   F+SM R++ ++ +MEHY+CMV LLGR+G LE+A   + +MP +P+S VW 
Sbjct: 458 GGLTEEGWFYFDSMSRNHGVEARMEHYSCMVTLLGRSGRLEEAYAMIKQMPFEPDSCVWG 517

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
           ALLSSCR+H+ V++  IAA  +F+L   + PG Y+ LSN  A+   W  V  +R+ M+ R
Sbjct: 518 ALLSSCRVHNRVDLGEIAAKRVFELEPRN-PGNYILLSNIYASKAMWVEVDMVRDMMRSR 576

Query: 483 GVLKDTGCSWV 493
           G+ K+ G SW+
Sbjct: 577 GLKKNPGYSWI 587



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 108/460 (23%), Positives = 179/460 (38%), Gaps = 118/460 (25%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           A  L     H + S T     + HAHI KTG+     I                  Q+F 
Sbjct: 9   ALPLFENFSHCLCSATKASLSQAHAHILKTGISLPETI------------------QIFS 50

Query: 105 ELPQ--RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           +L      +  ++YM+                    + G  PD      ++K  TC   +
Sbjct: 51  KLNHFGHVIRVFSYML--------------------TQGIVPDSRVLPTVIK--TCAALS 88

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
                  G+ +H   L   +  D V+ ++L+  YV+      AR VFD + +  V+ S++
Sbjct: 89  A---LQTGKQMHCFALVSGLGLDSVVLSSLLHMYVQFDHLKDARNVFDKLPQPGVVTSSA 145

Query: 223 MISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSIS----------------- 261
           +IS F  +G V++ +E+F +T    VE ++V +N MI G++ S                 
Sbjct: 146 LISRFARKGRVKETKELFYQTRDLGVELNLVSWNGMISGFNRSGSYLDAVLMFQNMHLEG 205

Query: 262 -----------------IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC------- 297
                            ++     +++HC +IK     D  + SAL+DMY KC       
Sbjct: 206 LKPDGTSVSSVLPAVGDLDMPLMGIQIHCYVIKQGLGPDKFVVSALIDMYGKCACASEMS 265

Query: 298 ------------------------GKIDDARRVFDHMQ--QKNVFTWTSMIDGYGKNGNP 331
                                   G +D+A  VF   +    NV +WTSMI    +NG  
Sbjct: 266 GVFNEMDEVDVGACNALVTGLSRNGLVDNALEVFKQFKGMDLNVVSWTSMIASCSQNGKD 325

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC 391
            +ALELF  MQ   V+PN VT    L ACG+   +  G+       R+  +   +   + 
Sbjct: 326 MEALELFREMQIEGVKPNSVTIPCLLPACGNIAALLHGKAAHCFSLRN-GIFNDVYVGSA 384

Query: 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           ++D+  + G +  A +   +M    N   W +L++   +H
Sbjct: 385 LIDMYAKCGRM-LASRLCFDMMPNRNLVSWNSLMAGYAMH 423


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1134

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 154/470 (32%), Positives = 251/470 (53%), Gaps = 24/470 (5%)

Query: 35  NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           N  + S  L A  L +AL+          GL+IH    K G +    +   L+ ++ KCG
Sbjct: 469 NEFTFSTNLKACGLLNALEK---------GLQIHGFCLKIGFEMMVEVGNSLVDMYSKCG 519

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG--ERPDGYTFSMI 152
            +  A ++F  +  R+L ++N MIAGY+  G    +L+    +  +   ERPD +T + +
Sbjct: 520 RINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSL 579

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVK--ADDVLYTALVDSYVKGGKTSYARIVFD 210
           LKA  C  + +      G+ +H  +++      +   +  +LVD YVK G    AR  FD
Sbjct: 580 LKA--CSSTGMIYA---GKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFD 634

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK----DIVVYNAMIEGYSISIETAR 266
            + EK +I  +S+I G+  +G   +A  +F++  E     D  V +++I G        +
Sbjct: 635 QIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSII-GVFADFALLQ 693

Query: 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
           +  ++   ++K     +  + ++LVDMY KCG +D+A + F  MQ K+V +WT MI GYG
Sbjct: 694 QGKQMQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYG 753

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM 386
           K+G   +A+ +F  M    ++P+ V +L  LSAC H+G++ +G E+F  +     +KP++
Sbjct: 754 KHGLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRV 813

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446
           EHYAC+VDLLGRAG L++A   V  MP KPN  +W  LLS CR+H D+E+       + +
Sbjct: 814 EHYACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLR 873

Query: 447 LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
           ++  + P  YV +SN    AG W+     RE   ++G+ K+ G SWV  E
Sbjct: 874 IDGKN-PANYVMMSNLYGQAGYWNEQGNARELGSIKGLQKEAGMSWVEIE 922



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/416 (24%), Positives = 196/416 (47%), Gaps = 20/416 (4%)

Query: 74  TGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL 133
           +G   N   S  L+ ++ KC     A ++FD +P+R + ++  +++G++ NG +  SLSL
Sbjct: 398 SGSGLNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSL 457

Query: 134 VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALV 193
             ++   G  P+ +TFS  LKA   C     L + L   +H   LK   +    +  +LV
Sbjct: 458 FTEMGRQGIYPNEFTFSTNLKA---CGLLNALEKGL--QIHGFCLKIGFEMMVEVGNSLV 512

Query: 194 DSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----- 248
           D Y K G+ + A  VF  M+ +++I   +MI+G++  G+   A   F    E  I     
Sbjct: 513 DMYSKCGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPD 572

Query: 249 -VVYNAMIEGYSISIETARKALEVHCQLIKNVFF--EDVKLGSALVDMYAKCGKIDDARR 305
                ++++  S S        ++H  L+++ F       +  +LVD+Y KCG +  AR+
Sbjct: 573 EFTLTSLLKACS-STGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARK 631

Query: 306 VFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365
            FD +++K + +W+S+I GY + G+  +A+ LF  +QE   Q +       +       L
Sbjct: 632 AFDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFAL 691

Query: 366 VDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV--WAA 423
           + +G+++ +++        +      +VD+  + G +++A K   EM  K   DV  W  
Sbjct: 692 LQQGKQM-QALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLK---DVISWTV 747

Query: 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +++    H   + A    N++ + N       Y+A+ +  + +G      EL  K+
Sbjct: 748 MITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKL 803


>gi|297611064|ref|NP_001065554.2| Os11g0109600 [Oryza sativa Japonica Group]
 gi|255679703|dbj|BAF27399.2| Os11g0109600 [Oryza sativa Japonica Group]
          Length = 1124

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 158/478 (33%), Positives = 246/478 (51%), Gaps = 31/478 (6%)

Query: 24  PPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNIS 83
           P + T P  L++   L +PL A                  G ++HA   K     N ++ 
Sbjct: 547 PSHLTIPIALKSASRLPHPLRA------------------GEQLHARSLKLPSHTNPHVL 588

Query: 84  IKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGER 143
             LL L+ KCG L  A ++FDE+P  +   +  +I  Y+  G + E++ + R   ++G R
Sbjct: 589 TSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMR 648

Query: 144 PDGYTFSMILKASTCCR-SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKT 202
           PD +T   +L A  C R +++     + R    +     V     + TA VD YVK G+ 
Sbjct: 649 PDSFTAVRVLTA--CARIADLATGETVWRAAEQE----GVAQSVFVATAAVDLYVKCGEM 702

Query: 203 SYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISI 262
           + AR VFD M  K+ +   +M+ G+ S G   +A ++F     + +      + G ++S 
Sbjct: 703 AKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAG-ALSA 761

Query: 263 ETARKALEVHCQLIKNV----FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTW 318
            T   AL++  Q I+ V    F ++  LG+AL+DMYAKCG   +A  VF  M++K++  W
Sbjct: 762 CTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVW 821

Query: 319 TSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER 378
            +MI G G  G+   A  L   M++  V+ N  TF+G L +C H GL+  GR  F +M +
Sbjct: 822 NAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTK 881

Query: 379 DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMAN 438
            Y + P++EHY CMVDLL RAG L++A + V +MP   N+ +  ALL  C++H + E+A 
Sbjct: 882 LYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAE 941

Query: 439 IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
               ++  L   +  G YV LSN  +  G+W+   +LR  MK +GV K   CSWV  E
Sbjct: 942 HVLKQLILLEPWNS-GNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFE 998


>gi|125537150|gb|EAY83638.1| hypothetical protein OsI_38867 [Oryza sativa Indica Group]
          Length = 914

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 146/443 (32%), Positives = 230/443 (51%), Gaps = 61/443 (13%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +H+H+ K G   +T +   L+  + K G    A ++FDE+P+R + ++N  +A  ++ G+
Sbjct: 469 VHSHVVKLGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGE 528

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
               L+  RKL    E P+                                       D 
Sbjct: 529 ----LAGARKLFD--EMPE--------------------------------------KDT 544

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
           V +  ++D Y K G+   A  +F  M E+NV+  ++M+SG+  +G +E A  IF K   K
Sbjct: 545 VSWNTILDGYTKAGEVEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMARVIFDKMPGK 604

Query: 247 DIVVYNAMIEGYSISIETA---------------RKALEVHCQLIKNVFFEDVKLGSALV 291
           ++V +  M++  S+ ++ A                    +H  + K        + +AL+
Sbjct: 605 NLVTWTIMMKEASVELDVAAVVSILAACAESGSLSLGKRIHRYVRKRNLGRSTHVCNALI 664

Query: 292 DMYAKCGKIDDARRVFD-HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY 350
           DM+ KCG ++ A  VFD    QK+  +W S+I G+  +G+ ++ALELF  M++    P+ 
Sbjct: 665 DMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFAMHGHGDKALELFAQMKQQGFNPDA 724

Query: 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410
           VT +  LSAC H G VD+GR  F +MERDY + P++EHY CM+DLLGR G +++A+  + 
Sbjct: 725 VTMINVLSACTHMGFVDEGRRYFSNMERDYGIMPQIEHYGCMIDLLGRGGLIKEAVDLIK 784

Query: 411 EMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
            MP +PN  +W +LLS+CRLH +VE A IA NE+ KL  ++  G Y  LSN  A AG+W 
Sbjct: 785 SMPWEPNEVIWGSLLSACRLHKNVEYAEIAVNELSKLQPSN-AGNYAVLSNIYAEAGQWS 843

Query: 471 SVTELREKMKLRGVLKDTGCSWV 493
            + + R +MK  G  K  G SWV
Sbjct: 844 DMAKARMQMKGTGSQKTAGSSWV 866



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 173/369 (46%), Gaps = 39/369 (10%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAY--NYMIAGYLK 123
           ++HA + K G+  N   + +L+  +     L  + ++FD +      A+  N M+  Y  
Sbjct: 370 ELHAQVLKQGLHLNPRAAARLVSAYALLRLLPSSRRVFDAIRDPHADAFLANTMLRAYAL 429

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G   ++L+      S+  R D +T+S ++KA +      P+     R VH+ ++K    
Sbjct: 430 GGAPRDALAAF----SAMPRRDSFTYSFLIKALSAA-GVAPV-----RAVHSHVVKLGSV 479

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +  AL+D+Y K G  S AR VFD M E++V+   + ++  + +G +  A ++F + 
Sbjct: 480 EDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGARKLFDEM 539

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
            EKD V +N +++GY+ + E     +E   +L + +   +V   S +V  Y K G ++ A
Sbjct: 540 PEKDTVSWNTILDGYTKAGE-----VEAAFELFQRMPERNVVSWSTMVSGYCKKGDLEMA 594

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
           R +FD M  KN+ TWT                    MM+E  V+ +    +  L+AC  +
Sbjct: 595 RVIFDKMPGKNLVTWT-------------------IMMKEASVELDVAAVVSILAACAES 635

Query: 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA-LKFVLEMPEKPNSDVWA 422
           G +  G+ I   + R  ++         ++D+  + G + +A   F  E  +K +S  W 
Sbjct: 636 GSLSLGKRIHRYV-RKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQK-DSVSWN 693

Query: 423 ALLSSCRLH 431
           +++    +H
Sbjct: 694 SIIGGFAMH 702



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 77/278 (27%), Positives = 126/278 (45%), Gaps = 21/278 (7%)

Query: 165 LPRNLGRM-----VHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE--KNV 217
           LPR L R      +HAQ+LK  +  +      LV +Y        +R VFD + +   + 
Sbjct: 358 LPRGLPRAAHVRELHAQVLKQGLHLNPRAAARLVSAYALLRLLPSSRRVFDAIRDPHADA 417

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIK 277
             + +M+  +   G   DA   F     +D   Y+ +I+  S +     +A  VH  ++K
Sbjct: 418 FLANTMLRAYALGGAPRDALAAFSAMPRRDSFTYSFLIKALSAAGVAPVRA--VHSHVVK 475

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
               ED  +G+AL+D Y+K G   DAR+VFD M +++V +W + +    + G    A +L
Sbjct: 476 LGSVEDTFVGNALIDAYSKNGGFSDARKVFDEMPERDVVSWNTAMAAMVREGELAGARKL 535

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVDLL 396
           F  M E     + V++   L     AG V+   E+F+ M ER+      +  ++ MV   
Sbjct: 536 FDEMPE----KDTVSWNTILDGYTKAGEVEAAFELFQRMPERN------VVSWSTMVSGY 585

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDV 434
            + G LE A     +MP K N   W  ++    +  DV
Sbjct: 586 CKKGDLEMARVIFDKMPGK-NLVTWTIMMKEASVELDV 622



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD-ELPQRTLSAYNYMIAGYL 122
           G +IH ++ K  +  +T++   L+ +  KCG +  A  +FD E  Q+   ++N +I G+ 
Sbjct: 641 GKRIHRYVRKRNLGRSTHVCNALIDMFCKCGCVNRADYVFDTETVQKDSVSWNSIIGGFA 700

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
            +G  +++L L  ++   G  PD  T   +L A T
Sbjct: 701 MHGHGDKALELFAQMKQQGFNPDAVTMINVLSACT 735


>gi|326509777|dbj|BAJ87104.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 624

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 148/463 (31%), Positives = 246/463 (53%), Gaps = 44/463 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++HA + + G+  +  ++ +L   +   G L ++  +       T   Y   I  +   G
Sbjct: 42  ELHAAVVRKGLDSDRAVAFRLQRAYAASGRLDHSLTLLGRTKDPTTIFYTSAIHAHSSRG 101

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
                L+L+  ++S G  P  +T S  L A   CR       +LGR +HA   K  +  D
Sbjct: 102 LHLPGLALLSDMLSEGLLPTAHTLSASLPA---CRG-----LSLGRALHAYAFKLALSGD 153

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             + TAL+  Y + G  + AR +FD M + +V+  T+M++ + + G ++DA  +F     
Sbjct: 154 SYVATALLSMYARAGDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPR 213

Query: 246 KDIVVYNAMIEGYSI------SIETARKAL-------EVHCQLIKNVFFE---------- 282
           KD + +NAMI+GY+       +++  R+ L       EV   L+ +   +          
Sbjct: 214 KDFICWNAMIDGYTQHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVAQLGTVESGKWL 273

Query: 283 ------------DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
                       +V++ +ALVDMY KCG ++DA  VF  +  K++  W +MI+GY  +G+
Sbjct: 274 HSYVKNSRCVQLNVRVATALVDMYCKCGSLEDAVAVFHGIGNKDIVVWNAMINGYAMHGD 333

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
             +ALE+F  +++  + P  +TF+G L+AC H+GLV++GR  F+SME +Y + PK+EHY 
Sbjct: 334 SRKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEEGRSFFQSMEHEYGIDPKIEHYG 393

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
           CMVDLLGRAG +E+A   V  +   P++ +W +LL++CRLH ++ +    A+ +   N  
Sbjct: 394 CMVDLLGRAGLIEEAFHLVQSLTITPDAVMWVSLLAACRLHKNMALGQRIADFLVA-NGL 452

Query: 451 DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
              G Y+ LSN  AA GKW+ V  +R  MK  G+ K+ GCS +
Sbjct: 453 ANSGMYILLSNIYAAVGKWEEVARVRSMMKASGIQKEPGCSAI 495



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 87/363 (23%), Positives = 155/363 (42%), Gaps = 82/363 (22%)

Query: 39  LSNPLTATSLPSALQHYINSDTPF-----YGLKIHAHITKTGVKPNTNISIKLLILHLKC 93
           LS+ L+   LP+A  H +++  P       G  +HA+  K  +  ++ ++  LL ++ + 
Sbjct: 110 LSDMLSEGLLPTA--HTLSASLPACRGLSLGRALHAYAFKLALSGDSYVATALLSMYARA 167

Query: 94  GALKYAGQMFDE-------------------------------LPQRTLSAYNYMIAGYL 122
           G    A  +FDE                               LP++    +N MI GY 
Sbjct: 168 GDAAAARALFDEMPDPHVVSVTAMLTCYANMGALDDARRLFDGLPRKDFICWNAMIDGYT 227

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           ++G+  E+L L R+++ S   PD  T  ++L A             LG +   + L    
Sbjct: 228 QHGKPNEALQLFRRMLRSSAEPDEVTVVLVLSAVA----------QLGTVESGKWLH--- 274

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
                       SYVK  +           ++ NV  +T+++  +   G +EDA  +F  
Sbjct: 275 ------------SYVKNSRC----------VQLNVRVATALVDMYCKCGSLEDAVAVFHG 312

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
              KDIVV+NAMI GY++  ++ RKALE+  QL     +        L++  +  G +++
Sbjct: 313 IGNKDIVVWNAMINGYAMHGDS-RKALEMFVQLRDQGLWPTDITFIGLLNACSHSGLVEE 371

Query: 303 ARRVFDHMQQK-----NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
            R  F  M+ +      +  +  M+D  G+ G   +A   F ++Q   + P+ V ++  L
Sbjct: 372 GRSFFQSMEHEYGIDPKIEHYGCMVDLLGRAGLIEEA---FHLVQSLTITPDAVMWVSLL 428

Query: 358 SAC 360
           +AC
Sbjct: 429 AAC 431


>gi|5280987|emb|CAB46001.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268109|emb|CAB78447.1| hypothetical protein [Arabidopsis thaliana]
          Length = 686

 Score =  258 bits (658), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 155/450 (34%), Positives = 244/450 (54%), Gaps = 29/450 (6%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +HAHI K G+     ++  L+ ++ KCGA  +A Q+FDE+P R   A+  ++    +   
Sbjct: 93  LHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANL 152

Query: 127 VEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             ++LS+   + SS   RPD + FS ++KA     S      + GR VH   +  +   D
Sbjct: 153 SGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSI-----DHGRQVHCHFIVSEYAND 207

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
           +V+ ++LVD Y K G  + A+ VFD +  KN I  T+M+SG+   G  E+A E+FR    
Sbjct: 208 EVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPV 267

Query: 246 KDIVVYNAMIEGY----------SISIETARKALEVH------------CQLIKNVFFED 283
           K++  + A+I G+          S+  E  R+ +++               L  ++    
Sbjct: 268 KNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQ 327

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
           V  G+AL+DMYAKC  +  A+ +F  M+ ++V +WTS+I G  ++G   +AL L+  M  
Sbjct: 328 VH-GNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQAEKALALYDDMVS 386

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE 403
             V+PN VTF+G + AC H G V+KGRE+F+SM +DY ++P ++HY C++DLLGR+G L+
Sbjct: 387 HGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLD 446

Query: 404 QALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL 463
           +A   +  MP  P+   WAALLS+C+     +M    A+ +        P  Y+ LSN  
Sbjct: 447 EAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLKDPSTYILLSNIY 506

Query: 464 AAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           A+A  W  V+E R K+    V KD G S V
Sbjct: 507 ASASLWGKVSEARRKLGEMEVRKDPGHSSV 536



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 108/217 (49%), Gaps = 14/217 (6%)

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG--- 226
            + +HA I+K  +     L   LV+ Y K G  S+A  VFD M  ++ I   S+++    
Sbjct: 90  AKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQ 149

Query: 227 --FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFE 282
                +     +       +  D  V++A+++  +   SI+  R   +VHC  I + +  
Sbjct: 150 ANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGR---QVHCHFIVSEYAN 206

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           D  + S+LVDMYAKCG ++ A+ VFD ++ KN  +WT+M+ GY K+G   +ALELF ++ 
Sbjct: 207 DEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILP 266

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD 379
                 N  ++   +S    +G   +   +F  M R+
Sbjct: 267 ----VKNLYSWTALISGFVQSGKGLEAFSVFTEMRRE 299



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 75/342 (21%), Positives = 136/342 (39%), Gaps = 59/342 (17%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G ++H H   +    +  +   L+ ++ KCG L  A  +FD +  +   ++  M++GY 
Sbjct: 191 HGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYA 250

Query: 123 KNGQVEESLSLVRKL---------------VSSGERPDGYTFSMILKASTCCRSNVPLPR 167
           K+G+ EE+L L R L               V SG+  + ++    ++     R ++  P 
Sbjct: 251 KSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRE---RVDILDPL 307

Query: 168 NLGRMVHA-QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
            L  +V A   L   +    V   AL+D Y K      A+ +F  M  ++V+  TS+I G
Sbjct: 308 VLSSIVGACANLAASIAGRQVHGNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVG 367

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
               G             EK + +Y+ M+                H      V F     
Sbjct: 368 MAQHG-----------QAEKALALYDDMVS---------------HGVKPNEVTF----- 396

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQK-----NVFTWTSMIDGYGKNGNPNQALELFCMM 341
              L+   +  G ++  R +F  M +      ++  +T ++D  G++G  ++A  L   M
Sbjct: 397 -VGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGLLDEAENLIHTM 455

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK 383
                 P+  T+   LSAC   G    G  I + +   + +K
Sbjct: 456 P---FPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLK 494



 Score = 55.5 bits (132), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 15/221 (6%)

Query: 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMID 323
           T  KAL  H  ++K    +   L + LV++Y KCG    A +VFD M  ++   W S++ 
Sbjct: 88  TTAKAL--HAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLT 145

Query: 324 GYGKNGNPNQAL-ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF-ESMERDYS 381
              +     + L     +     ++P+   F   + AC + G +D GR++    +  +Y+
Sbjct: 146 ALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYA 205

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441
               ++  + +VD+  + G L  A K V +     N+  W A++S        E     A
Sbjct: 206 NDEVVK--SSLVDMYAKCGLLNSA-KAVFDSIRVKNTISWTAMVSGYAKSGRKE----EA 258

Query: 442 NEIFKLNANDRPGAYVALSNTLAAAGK----WDSVTELREK 478
            E+F++       ++ AL +    +GK    +   TE+R +
Sbjct: 259 LELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRE 299


>gi|224141419|ref|XP_002324070.1| predicted protein [Populus trichocarpa]
 gi|222867072|gb|EEF04203.1| predicted protein [Populus trichocarpa]
          Length = 546

 Score =  257 bits (657), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 166/511 (32%), Positives = 263/511 (51%), Gaps = 71/511 (13%)

Query: 49  PSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILH---LKCGALKYAGQMFDE 105
           PS+L  + N +      +IHA +   G   N   +++ LI        GA+ YA Q+F +
Sbjct: 16  PSSL--WKNCNNLLALKQIHATLIIKGFNSN-RAALRELIFAGAMTISGAINYAHQVFAQ 72

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST-------- 157
           + +  +  +N M+ G  ++    + + L  ++ + G +PD +TFS +LK  T        
Sbjct: 73  ITEPDIFMWNTMMRGSSQSKNPSKVVLLYTQMENRGVKPDKFTFSFLLKGCTRLEWRKTG 132

Query: 158 -CCRSNVP----------------LPRNLGRMVHAQILKCDVKADDVL-YTALVDSYVKG 199
            C    V                    N G +V A+ +  D+    V+ ++AL   Y + 
Sbjct: 133 FCVHGKVLKYGFEVNSFVRNTLIYFHSNCGDLVIARSIFYDLPERSVVSWSALTAGYARR 192

Query: 200 GKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS 259
           G+   AR +FD M  K+++    MI+G++  G +E+A  +F +  EKD+V +N MI GY 
Sbjct: 193 GELGVARQIFDEMPVKDLVSWNVMITGYVKNGEMENARTLFDEAPEKDVVTWNTMIAGYV 252

Query: 260 ISIETARKALE-----------------------------------VHCQLIKNVFFE-D 283
           +  E  R+ALE                                   +HC + +    +  
Sbjct: 253 LRGEQ-RQALEMFEEMRNVGECPDEVTMLSLLSACADLGDLQVGRKLHCSISEMTRGDLS 311

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
           V LG+ALVDMYAKCG I+ A +VF  M++K+V TW S+I G   +G+  ++++LF  MQ 
Sbjct: 312 VLLGNALVDMYAKCGSIEIALQVFKKMREKDVTTWNSVIGGLAFHGHAEESIKLFAEMQA 371

Query: 344 C-CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
              ++PN +TF+G + AC HAG V++GR  F+ M   Y ++P M H+ CMVDLLGRAG L
Sbjct: 372 LKNIKPNEITFVGVIVACSHAGNVEEGRRYFKLMRERYDIEPNMIHHGCMVDLLGRAGLL 431

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
            +A + + +M  +PN+ +W  LL +CR+H +VE+  +A   + KL   D  G YV LSN 
Sbjct: 432 SEAFELIAKMEIEPNAIIWRTLLGACRVHGNVELGRLANERLLKLR-RDESGDYVLLSNI 490

Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            A+AG+WD   E+R+ M   GV K+ G S +
Sbjct: 491 YASAGEWDGAEEVRKLMDDGGVRKEAGRSLI 521


>gi|242079983|ref|XP_002444760.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
 gi|241941110|gb|EES14255.1| hypothetical protein SORBIDRAFT_07g027560 [Sorghum bicolor]
          Length = 650

 Score =  257 bits (657), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 153/472 (32%), Positives = 255/472 (54%), Gaps = 32/472 (6%)

Query: 40  SNPLTATSLPSALQHYINSDTPFYGLKIHAHIT--------KTGVKPNTNISIKLLILHL 91
           ++P++ T L   ++  +   T   G  IH H+           G      +S  L+ ++ 
Sbjct: 70  ADPVSLTRL---VKLCVRHGTAGDGRLIHRHVEAHGQLSHYSGGAGGGIFVSNSLVSMYA 126

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLK-NGQVEESLSLVRKLVSSGERPDGYTFS 150
           K G L  A ++FD +P+R +  +  ++A     +G+ EE+L  +  +   G  P+ YTFS
Sbjct: 127 KFGLLDDALRLFDRMPERNVVTWTTVVAALANADGRKEEALRFLVAMWRDGVAPNAYTFS 186

Query: 151 MILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFD 210
            +L A  C    V         +HA  +K  + +D  + ++L+D+Y+K G     R VFD
Sbjct: 187 SVLGA--CGTPGVLAA------LHASTVKVGLDSDVFVRSSLIDAYMKLGDLDGGRRVFD 238

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY------SISIET 264
            M+ ++++   S+I+GF   G    A E+F +  +         +          + +E 
Sbjct: 239 EMVTRDLVVWNSIIAGFAQSGDGVGAIELFMRMKDAGFSANQGTLTSVLRACTGMVMLEA 298

Query: 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
            R   +VH  ++K  +  D+ L +AL+DMY KCG ++DA  +F  M Q++V +W++MI G
Sbjct: 299 GR---QVHAHVLK--YERDLILHNALLDMYCKCGSLEDAEALFHRMPQRDVISWSTMISG 353

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP 384
             +NG   +AL +F +M+   V PN +T +G L AC HAGLV+ G   F SM++ + ++P
Sbjct: 354 LAQNGKSAEALRVFDLMKSEGVAPNRITMVGVLFACSHAGLVEDGWYYFRSMKKLFGIQP 413

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
           + EH+ CMVDLLGRAG L++A++F+ +M  +P++ +W  LL +CR+H    +A  AA EI
Sbjct: 414 EREHHNCMVDLLGRAGKLDEAVEFIRDMNLEPDAVIWRTLLGACRMHKSGNLAAYAAREI 473

Query: 445 FKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
            KL  +D+ GA V LSNT A   +W    +  + M+ RG+ K+ G SW+  E
Sbjct: 474 LKLEPDDQ-GARVLLSNTYADLRQWTDAEKSWKAMRDRGMKKEPGRSWIELE 524


>gi|222615375|gb|EEE51507.1| hypothetical protein OsJ_32672 [Oryza sativa Japonica Group]
          Length = 1100

 Score =  257 bits (657), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 158/478 (33%), Positives = 246/478 (51%), Gaps = 31/478 (6%)

Query: 24  PPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNIS 83
           P + T P  L++   L +PL A                  G ++HA   K     N ++ 
Sbjct: 523 PSHLTIPIALKSASRLPHPLRA------------------GEQLHARSLKLPSHTNPHVL 564

Query: 84  IKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGER 143
             LL L+ KCG L  A ++FDE+P  +   +  +I  Y+  G + E++ + R   ++G R
Sbjct: 565 TSLLSLYAKCGLLHRAQRVFDEMPHPSTVPWTALITAYMDAGDLREAVHVARNAFANGMR 624

Query: 144 PDGYTFSMILKASTCCR-SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKT 202
           PD +T   +L A  C R +++     + R    +     V     + TA VD YVK G+ 
Sbjct: 625 PDSFTAVRVLTA--CARIADLATGETVWRAAEQE----GVAQSVFVATAAVDLYVKCGEM 678

Query: 203 SYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISI 262
           + AR VFD M  K+ +   +M+ G+ S G   +A ++F     + +      + G ++S 
Sbjct: 679 AKAREVFDKMRHKDAVAWGAMVGGYASNGHPREALDLFLAMQAEGMKPDCYAVAG-ALSA 737

Query: 263 ETARKALEVHCQLIKNV----FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTW 318
            T   AL++  Q I+ V    F ++  LG+AL+DMYAKCG   +A  VF  M++K++  W
Sbjct: 738 CTRLGALDLGRQAIRMVDWDEFLDNPVLGTALIDMYAKCGSTVEAWVVFQQMRKKDIIVW 797

Query: 319 TSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER 378
            +MI G G  G+   A  L   M++  V+ N  TF+G L +C H GL+  GR  F +M +
Sbjct: 798 NAMILGLGMTGHEKIAFALVGQMEKSGVKLNDNTFIGLLCSCTHTGLIQDGRRYFHNMTK 857

Query: 379 DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMAN 438
            Y + P++EHY CMVDLL RAG L++A + V +MP   N+ +  ALL  C++H + E+A 
Sbjct: 858 LYHISPRIEHYGCMVDLLSRAGLLQEAHQLVDDMPMPANAVILGALLGGCKIHRNTELAE 917

Query: 439 IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
               ++  L   +  G YV LSN  +  G+W+   +LR  MK +GV K   CSWV  E
Sbjct: 918 HVLKQLILLEPWN-SGNYVMLSNIYSNRGRWEDAAKLRLDMKAKGVEKVPACSWVEFE 974


>gi|297833632|ref|XP_002884698.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330538|gb|EFH60957.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 685

 Score =  257 bits (657), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 157/522 (30%), Positives = 261/522 (50%), Gaps = 35/522 (6%)

Query: 1   MPNLSRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNP------------------ 42
           + NL   R+  F  TH   Y+ +  + T  P +  Y++L N                   
Sbjct: 47  LVNLLLKRTLFFRQTH---YSFLLFSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIR 103

Query: 43  -----LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALK 97
                L   + P  L+    +     G+ +H+ + K G   +      LL ++   G L 
Sbjct: 104 KHGLNLHGFTFPLVLKACTRASNRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLN 163

Query: 98  YAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
            A ++F+E+P+R++  +  + +GY   G+  E++ L +K+V  G RPD Y    +L A  
Sbjct: 164 DAHKVFEEIPERSVVTWTALFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSA-- 221

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
           C         + G  +   + + +++ +  + T LV+ Y K GK   AR VFD M EK++
Sbjct: 222 CVHVG---DLDSGEWIVKHMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMGEKDI 278

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIET--ARKALEVHCQL 275
           +  ++MI G+ S  F ++  E F + +++++      I G+  S  +  A    E    L
Sbjct: 279 VTWSTMIQGYASNSFPKEGIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISL 338

Query: 276 I-KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQA 334
           I ++ F  ++ + +AL+DMYAKCG +     VF  M++K++    + I G  KNG+   +
Sbjct: 339 IDRHEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLS 398

Query: 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394
             +F   ++  + P+  TFLG L  C HAGL+  G   F ++   Y++K  +EHY CMVD
Sbjct: 399 FAVFGQTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVD 458

Query: 395 LLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG 454
           L GRAG L+ A + + +MP +PN+ VW ALLS CRL  D ++A     E+  L   +  G
Sbjct: 459 LWGRAGMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWN-AG 517

Query: 455 AYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
            YV LSN  + +G+WD   E+R+ M  +G+ K  G SW+  E
Sbjct: 518 NYVQLSNIYSVSGRWDEAAEVRDMMNRKGMKKIPGYSWIELE 559



 Score =  147 bits (370), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/382 (27%), Positives = 188/382 (49%), Gaps = 22/382 (5%)

Query: 44  TATSLPSALQHYINSDTPFYGLK-IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           ++TS    ++  I+  + F  LK +H  +    +  +T +   LL   L      Y+  +
Sbjct: 8   SSTSKVQQIKTLISVASTFNHLKQVHVSLIHHHLHHDTFLVNLLLKRTLFFRQTHYSFLL 67

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           F       +  YN +I G++ N    E+L L   +   G    G+TF ++LKA  C R++
Sbjct: 68  FSHTQFPNIFLYNTLINGFVNNHLFHETLDLFLSIRKHGLNLHGFTFPLVLKA--CTRAS 125

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
               R LG  +H+ ++KC    D    T+L+  Y   G+ + A  VF+ + E++V+  T+
Sbjct: 126 ---NRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKVFEEIPERSVVTWTA 182

Query: 223 MISGFMSQGFVEDAEEIFRKTVEKDI---------VVYNAMIEGYSISIETARKALEVHC 273
           + SG+ + G   +A ++F+K VE  +         V+   +  G   S E   K +E   
Sbjct: 183 LFSGYTTAGKHREAIDLFKKMVEMGVRPDSYFIVQVLSACVHVGDLDSGEWIVKHME-EM 241

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
           ++ KN F       + LV++YAKCGK++ AR VFD M +K++ TW++MI GY  N  P +
Sbjct: 242 EMQKNSFVR-----TTLVNLYAKCGKMEKARSVFDSMGEKDIVTWSTMIQGYASNSFPKE 296

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMV 393
            +E F  M +  ++P+  + +G LS+C   G +D G      ++R +     +     ++
Sbjct: 297 GIEFFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDR-HEFLTNLFMANALI 355

Query: 394 DLLGRAGSLEQALKFVLEMPEK 415
           D+  + G++ +  +   EM EK
Sbjct: 356 DMYAKCGAMARGFEVFKEMKEK 377


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  257 bits (657), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 138/432 (31%), Positives = 241/432 (55%), Gaps = 15/432 (3%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ-RTLSAYNYMIAGYLKNG 125
           +H    K+G+  N N+   L++   KC  +  A  +F  +   +++ ++  MI+GYL+NG
Sbjct: 326 LHCKTLKSGLSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNG 385

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             +++++L   +   G +P+ +T+S IL                   +HA+++K + +  
Sbjct: 386 DTDQAVNLFSLMRREGVKPNHFTYSTILTVQHAV---------FISEIHAEVIKTNYEKS 436

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----R 241
             + TAL+D++VK G  S A  VF+++  K+VI  ++M++G+   G  E+A +IF    R
Sbjct: 437 SSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTR 496

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
           + ++ +   + ++I   +    +  +  + H   IK      + + S+LV +YAK G I+
Sbjct: 497 EGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRGNIE 556

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            A  +F   +++++ +W SMI GY ++G   +ALE+F  MQ+  ++ + +TF+G +SAC 
Sbjct: 557 SAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACA 616

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
           HAGLV KG+  F  M  D+ + P MEHY+CM+DL  RAG L +A+  +  MP  P + VW
Sbjct: 617 HAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAATVW 676

Query: 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
             +L++ R+H ++E+  +AA +I  L       AYV LSN  AAAG W     +R+ M  
Sbjct: 677 RIVLAASRVHRNIELGKLAAEKIISLEP-QHSAAYVLLSNIYAAAGNWHEKVNVRKLMDK 735

Query: 482 RGVLKDTGCSWV 493
           R V K+ G SW+
Sbjct: 736 RRVKKEPGYSWI 747



 Score =  145 bits (366), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 208/414 (50%), Gaps = 26/414 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IHA + K G +    +   L+ +  K G L+ A  +FD +  +   ++N MIAG++ 
Sbjct: 222 GMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVI 281

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NGQ  E+      +  +G +P   TF+ ++K+   C S   L   L R++H + LK  + 
Sbjct: 282 NGQDLEAFETFNNMQLAGAKPTHATFASVIKS---CASLKEL--GLVRVLHCKTLKSGLS 336

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLE-KNVICSTSMISGFMSQGFVEDAEEIF-- 240
            +  + TAL+ +  K  +   A  +F +M   ++V+  T+MISG++  G  + A  +F  
Sbjct: 337 TNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSL 396

Query: 241 --RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
             R+ V+ +   Y+ +     ++++ A    E+H ++IK  + +   +G+AL+D + K G
Sbjct: 397 MRREGVKPNHFTYSTI-----LTVQHAVFISEIHAEVIKTNYEKSSSVGTALLDAFVKIG 451

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            I DA +VF+ ++ K+V  W++M+ GY + G   +A ++F  +    ++PN  TF   ++
Sbjct: 452 NISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIIN 511

Query: 359 AC-GHAGLVDKGREIFESMERDYSMKPKMEHYAC----MVDLLGRAGSLEQALKFVLEMP 413
           AC      V++G++        Y++K ++ +  C    +V L  + G++E A +      
Sbjct: 512 ACTAPTASVEQGKQF-----HAYAIKLRLNNALCVSSSLVTLYAKRGNIESAHEIFKRQK 566

Query: 414 EKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG 467
           E+ +   W +++S    H   + A     E+ K N       ++ + +  A AG
Sbjct: 567 ER-DLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVISACAHAG 619



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 135/273 (49%), Gaps = 18/273 (6%)

Query: 97  KYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAS 156
           ++A Q+FD+ P R L  +N ++  Y +  Q +E+L L   L  SG  PD YT S +L  S
Sbjct: 53  RFAQQLFDQTPLRDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVL--S 110

Query: 157 TCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216
            C  S       +G  VH Q +KC +     +  +LVD Y K G     R VFD M +++
Sbjct: 111 VCAGS---FNGTVGEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRD 167

Query: 217 VICSTSMISGFMSQGFVEDAEEIF--------RKTVEKDIVVYNAMIEGYSISIETARKA 268
           V+   S+++G+    F +   E+F        R        V  A+    +++I      
Sbjct: 168 VVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAI-----G 222

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
           +++H  ++K  F  +  + ++L+ M +K G + DAR VFD+M+ K+  +W SMI G+  N
Sbjct: 223 MQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVIN 282

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           G   +A E F  MQ    +P + TF   + +C 
Sbjct: 283 GQDLEAFETFNNMQLAGAKPTHATFASVIKSCA 315



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/368 (25%), Positives = 186/368 (50%), Gaps = 17/368 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H    K G+  + ++   L+ ++ K G ++   ++FDE+  R + ++N ++ GY  
Sbjct: 121 GEQVHCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSW 180

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N   ++   L   +   G RPD YT S ++ A+   +  V     +G  +HA ++K   +
Sbjct: 181 NRFNDQVWELFCLMQVEGYRPDYYTVSTVI-AALANQGAVA----IGMQIHALVVKLGFE 235

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            + ++  +L+    K G    AR+VFD M  K+ +   SMI+G +  G   +A E F   
Sbjct: 236 TERLVCNSLISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNM 295

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
                +     + ++I+  + S++       +HC+ +K+    +  + +AL+    KC +
Sbjct: 296 QLAGAKPTHATFASVIKSCA-SLKELGLVRVLHCKTLKSGLSTNQNVLTALMVALTKCKE 354

Query: 300 IDDARRVFDHMQQ-KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           IDDA  +F  M   ++V +WT+MI GY +NG+ +QA+ LF +M+   V+PN+ T+   L+
Sbjct: 355 IDDAFSLFSLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILT 414

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
              HA  + +     E ++ +Y     +     ++D   + G++  A+K V E+ E  + 
Sbjct: 415 V-QHAVFISEIHA--EVIKTNYEKSSSVG--TALLDAFVKIGNISDAVK-VFELIETKDV 468

Query: 419 DVWAALLS 426
             W+A+L+
Sbjct: 469 IAWSAMLA 476



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 122/255 (47%), Gaps = 20/255 (7%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IHA + KT  + ++++   LL   +K G +  A ++F+ +  + + A++ M+AGY + G
Sbjct: 423 EIHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAG 482

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           + EE+  +  +L   G +P+ +TF  I+ A T   ++V      G+  HA  +K  +   
Sbjct: 483 ETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVE----QGKQFHAYAIKLRLNNA 538

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----R 241
             + ++LV  Y K G    A  +F    E++++   SMISG+   G  + A E+F    +
Sbjct: 539 LCVSSSLVTLYAKRGNIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQK 598

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG------SALVDMYA 295
           + +E D + +  +I         A   L    Q   N+   D  +       S ++D+Y+
Sbjct: 599 RNLEVDAITFIGVISA------CAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYS 652

Query: 296 KCGKIDDARRVFDHM 310
           + G +  A  + + M
Sbjct: 653 RAGMLGKAMDIINGM 667


>gi|125527494|gb|EAY75608.1| hypothetical protein OsI_03512 [Oryza sativa Indica Group]
          Length = 608

 Score =  257 bits (657), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 146/406 (35%), Positives = 236/406 (58%), Gaps = 12/406 (2%)

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           K G +  A ++FD + +RT +++N MIA Y   G+ +E+L L R+++S G RP+  T + 
Sbjct: 163 KSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIAT 222

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           +   S C ++        G+   + I + D++ + +++TAL++ YVK      AR  FD 
Sbjct: 223 MF--SICAKTG---DLETGKWARSLIAEQDLQ-NMIVHTALMEMYVKCQAIDEARREFDR 276

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV 271
           M +++V+  ++MI+G+   G   ++ E+F +            + G  +S      + E+
Sbjct: 277 MQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGV-LSACAQLGSDEL 335

Query: 272 HCQLIKNVFFEDVKL----GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
             Q+  +V  +++ L    GSAL+DMY KCG +  AR VF+ M+ K V TW SM+ G   
Sbjct: 336 GGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLAL 395

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           NG    A+ L+  M E  VQPN +TF+  L+AC HAGLVD+G   F+ M+  + + P++E
Sbjct: 396 NGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVE 455

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           H AC+VDLL ++G L +A KF+ +M  +PN+ +W+ LLS+CR H DVE+A +AA+++  L
Sbjct: 456 HCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAASKLLVL 515

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
              D    YV LSN  A AG W  V E+R+ M+ + V K +  SW+
Sbjct: 516 EP-DNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAYSWI 560



 Score =  128 bits (322), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 171/402 (42%), Gaps = 79/402 (19%)

Query: 97  KYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAS 156
           + A  +FD +P+ T +    +I+   +    +E L     L   G         +++K+ 
Sbjct: 36  RAARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSC 95

Query: 157 TCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216
               ++       G+ VH   +   +  D  + TALVD Y K G    A  VFD M  K+
Sbjct: 96  AILAAS-----RQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKD 150

Query: 217 VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY------------------ 258
            I    +I+G+   G V  A  +F   V +    +N+MI  Y                  
Sbjct: 151 PIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLS 210

Query: 259 ------SISI-------------ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
                 +I+I             ET + A      LI     +++ + +AL++MY KC  
Sbjct: 211 EGARPNAITIATMFSICAKTGDLETGKWAR----SLIAEQDLQNMIVHTALMEMYVKCQA 266

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ID+ARR FD MQQ++V  W++MI GY +NG P+++LELF  M+    +PN VT +G LSA
Sbjct: 267 IDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSA 326

Query: 360 CGHAGLVDKGREIFESME-------------------------RDYSMKPKMEH-----Y 389
           C   G  + G +I   +E                         R  S+  +MEH     +
Sbjct: 327 CAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITW 386

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSC 428
             M+  L   G  + A+    EM E   +PN   + ALL++C
Sbjct: 387 NSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTAC 428



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 131/292 (44%), Gaps = 48/292 (16%)

Query: 79  NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLV 138
           N  +   L+ +++KC A+  A + FD + QR + A++ MIAGY +NG+  ESL L  ++ 
Sbjct: 250 NMIVHTALMEMYVKCQAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMK 309

Query: 139 SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVK 198
           ++  +P+  T   +L A     S+      LG  + + +   ++     L +AL+D Y K
Sbjct: 310 ATSCKPNEVTLVGVLSACAQLGSD-----ELGGQIGSHVESQNLPLTSYLGSALIDMYTK 364

Query: 199 GGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAM 254
            G    AR VF+ M  K VI   SM+ G    GF +DA  ++++  E+D+    + + A+
Sbjct: 365 CGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVAL 424

Query: 255 IEGYSISIETARKALEVHCQLIKN--VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ 312
           +   +            H  L+     FF+++K    +      C  I            
Sbjct: 425 LTACT------------HAGLVDQGMSFFKEMKTIHHVSPQVEHCACI------------ 460

Query: 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC-GHA 363
                    +D   K+G   +A +  C M+   V+PN V +   LSAC  HA
Sbjct: 461 ---------VDLLCKSGRLREAYKFICDME---VEPNAVIWSTLLSACRAHA 500



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 112/272 (41%), Gaps = 54/272 (19%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +I +H+    +   + +   L+ ++ KCG +  A  +F+ +  + +  +N M+ G   
Sbjct: 336 GGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLAL 395

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKAST---CCRSNVPLPRNLGRMVHA--QIL 178
           NG  +++++L +++     +P+  TF  +L A T        +   + +  + H   Q+ 
Sbjct: 396 NGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVE 455

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
            C           +VD   K G+   A + + DM +E N +  ++++S   +   VE A+
Sbjct: 456 HC---------ACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAK 506

Query: 238 EIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
               K +         ++E  + SI            L+ N+              YA  
Sbjct: 507 LAASKLL---------VLEPDNSSIYV----------LLSNI--------------YADA 533

Query: 298 GKIDDARRVFDHMQQKNV-----FTWTSMIDG 324
           G   D R + D M+ KNV     ++W  + DG
Sbjct: 534 GLWGDVREIRDLMRSKNVQKLSAYSWIEL-DG 564


>gi|115463097|ref|NP_001055148.1| Os05g0305300 [Oryza sativa Japonica Group]
 gi|113578699|dbj|BAF17062.1| Os05g0305300 [Oryza sativa Japonica Group]
          Length = 852

 Score =  257 bits (657), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 156/490 (31%), Positives = 256/490 (52%), Gaps = 66/490 (13%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++H +  + G   +  +   L+  + KCG ++ A ++F+ +  + + ++N M+AGY ++G
Sbjct: 248 EVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSG 307

Query: 126 QVE-----------------------------------ESLSLVRKLVSSGERPDGYTFS 150
             +                                   E+L++ R+++ SG  P+  T  
Sbjct: 308 NFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTII 367

Query: 151 MILKASTCCRSNVPLPRNLGRMVHAQILK-CDVKADD---------VLYTALVDSYVKGG 200
            +L A   C S     +  G  +HA  LK C +  D+         ++Y AL+D Y K  
Sbjct: 368 SVLSA---CASLGAFSQ--GMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 422

Query: 201 KTSYARIVFD--MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY 258
               AR +FD   + E+NV+  T MI G    G   DA ++F + + +    Y      Y
Sbjct: 423 SFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP---YGVAPNAY 479

Query: 259 SIS--------IETARKALEVHCQLIKNVFFEDVK--LGSALVDMYAKCGKIDDARRVFD 308
           +IS        +   R   ++H  ++++  ++     + + L++MY+KCG +D AR VFD
Sbjct: 480 TISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFD 539

Query: 309 HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDK 368
            M QK+  +WTSM+ GYG +G  ++AL++F  M++    P+ +TFL  L AC H G+VD+
Sbjct: 540 SMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQ 599

Query: 369 GREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
           G   F+SM  DY + P+ EHYA  +DLL R G L++A K V +MP +P + VW ALLS+C
Sbjct: 600 GLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSAC 659

Query: 429 RLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDT 488
           R+H +VE+A  A N++ ++NA +  G+Y  +SN  A AG+W  V  +R  MK  G+ K  
Sbjct: 660 RVHSNVELAEHALNKLVEMNA-ENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRP 718

Query: 489 GCSWVGTESG 498
           GCSWV  + G
Sbjct: 719 GCSWVQGQKG 728



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 177/393 (45%), Gaps = 62/393 (15%)

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149
           +L CGA  YA  + + +       +N +I  ++K G+++ ++++  +++ +G R D +T 
Sbjct: 61  YLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSCRMLRAGTRLDHFTL 120

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVF 209
             +LKA       +P  R  G   H  I     +++  +  ALV  Y + G    A ++F
Sbjct: 121 PHVLKAC----GELPSYR-CGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIF 175

Query: 210 DMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRK---------TVEKDIVVYNAMIEG 257
           D + ++   +VI   S++S  +       A ++F K         T E+  ++    I  
Sbjct: 176 DEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILP 235

Query: 258 YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT 317
              S++   +  EVH   I+N  F DV +G+AL+D YAKCG +++A +VF+ M+ K+V +
Sbjct: 236 ACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVS 295

Query: 318 WTSMIDGYGKNGNPNQALELFCMM--------------------QECCVQ---------- 347
           W +M+ GY ++GN   A ELF  M                    Q  C            
Sbjct: 296 WNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMI 355

Query: 348 -----PNYVTFLGALSACGHAGLVDKGREIFE--------SMERDYSMKPK-MEHYACMV 393
                PN VT +  LSAC   G   +G EI          +++ D+  + + +  Y  ++
Sbjct: 356 FSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALI 415

Query: 394 DLLGRAGSLEQALKFVLEMP-EKPNSDVWAALL 425
           D+  +  S + A     ++P E+ N   W  ++
Sbjct: 416 DMYSKCRSFKAARSIFDDIPLEERNVVTWTVMI 448



 Score = 80.1 bits (196), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 138/320 (43%), Gaps = 65/320 (20%)

Query: 64  GLKIHAHITKT----------GVKPNTNISIKLLILHLKCGALKYAGQMFDELP--QRTL 111
           G++IHA+  K           G   +  +   L+ ++ KC + K A  +FD++P  +R +
Sbjct: 382 GMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNV 441

Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSS--GERPDGYTFSMILKASTCCRSNVPLPRNL 169
             +  MI G+ + G   ++L L  +++S   G  P+ YT S IL A   C     +   +
Sbjct: 442 VTWTVMIGGHAQYGDSNDALKLFVEMISEPYGVAPNAYTISCILMA---CAHLAAI--RI 496

Query: 170 GRMVHAQILKCDVKADDVLYTA--LVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
           G+ +HA +L+         + A  L++ Y K G    AR VFD M +K+ I  TSM++G+
Sbjct: 497 GKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGY 556

Query: 228 MSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG 287
              G   +A +IF K                       RKA  V          +D+   
Sbjct: 557 GMHGRGSEALDIFDKM----------------------RKAGFVP---------DDITF- 584

Query: 288 SALVDMYA--KCGKIDDARRVFDHMQQKNVFT-----WTSMIDGYGKNGNPNQALELFCM 340
             LV +YA   CG +D     FD M      T     +   ID   + G  ++A +    
Sbjct: 585 --LVVLYACSHCGMVDQGLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWK---T 639

Query: 341 MQECCVQPNYVTFLGALSAC 360
           +++  ++P  V ++  LSAC
Sbjct: 640 VKDMPMEPTAVVWVALLSAC 659



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 21/192 (10%)

Query: 64  GLKIHAHITKTGVKPNTNISIK--LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           G +IHA++ +     ++   +   L+ ++ KCG +  A  +FD + Q++  ++  M+ GY
Sbjct: 497 GKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGY 556

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
             +G+  E+L +  K+  +G  PD  TF ++L A + C            MV   +   D
Sbjct: 557 GMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHC-----------GMVDQGLSYFD 605

Query: 182 VKADDV-------LYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFV 233
             + D         Y   +D   + G+   A + V DM +E   +   +++S       V
Sbjct: 606 SMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNV 665

Query: 234 EDAEEIFRKTVE 245
           E AE    K VE
Sbjct: 666 ELAEHALNKLVE 677



 Score = 44.7 bits (104), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 47/206 (22%), Positives = 83/206 (40%), Gaps = 12/206 (5%)

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
           F     LG+ +V  Y  CG  D A  V + +       W  +I  + K G  + A+ + C
Sbjct: 47  FISPRSLGTGVVASYLACGATDYALLVLERVTPSPAVWWNLLIREHIKQGRLDSAINVSC 106

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
            M     + ++ T    L ACG       G   F  +      +  +     +V +  R 
Sbjct: 107 RMLRAGTRLDHFTLPHVLKACGELPSYRCGSA-FHGLICCNGFESNVFICNALVAMYSRC 165

Query: 400 GSLEQALKFVLEMPEKPNSDV--WAALLSSCRLHDDVEMANIAANEIFKLN--ANDRP-- 453
           GSLE+A     E+ ++   DV  W +++S+   H     A  A +   K+    +++P  
Sbjct: 166 GSLEEASMIFDEITQRGIDDVISWNSIVSA---HVKSSNAWTALDLFSKMTLIVHEKPTN 222

Query: 454 --GAYVALSNTLAAAGKWDSVTELRE 477
                +++ N L A G   +V + +E
Sbjct: 223 ERSDIISIVNILPACGSLKAVPQTKE 248


>gi|242055533|ref|XP_002456912.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
 gi|241928887|gb|EES02032.1| hypothetical protein SORBIDRAFT_03g045330 [Sorghum bicolor]
          Length = 648

 Score =  257 bits (657), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 151/439 (34%), Positives = 241/439 (54%), Gaps = 19/439 (4%)

Query: 64  GLKIHAHITKTGVKPNTN-ISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G ++HA   + G  P+   +S   L ++ K G L  A ++FDE+P R + A+N ++   +
Sbjct: 137 GPQVHALALRFGYLPDDAFVSCAALDMYFKTGRLALARRLFDEMPNRNVVAWNAVMTNAV 196

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            +G+  E++     L  +G  P+  +      A   C     L  +LG   H  + KC  
Sbjct: 197 LDGRPIETVEAYFGLRGAGGMPNVVSVCAFFNA---CAGMTCL--SLGEQFHGFVAKCGF 251

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-- 240
             D  +  ++VD Y K      AR+VFD M  +N +   SM+  +   G  E+A  ++  
Sbjct: 252 DKDVSVSNSMVDFYGKCRCMGKARLVFDGMGVRNSVSWCSMVVAYAQNGAEEEAFLVYLG 311

Query: 241 -RKTVEK--DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
            R+  E+  D +V + +     +      +AL  H    ++    ++ + SALVDMY KC
Sbjct: 312 ARRAGEEPTDFMVSSLLTTCAGLLGLDLGRAL--HAVAARSCIDANIFVASALVDMYGKC 369

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF---CMMQECCVQPNYVTFL 354
           G I DA +VF  M Q+N+ TW +MI GY   G+   AL +F    M +E    PNY+T +
Sbjct: 370 GGIQDAEQVFFEMPQRNLVTWNAMIGGYAHIGDAWNALAVFDEMIMGRE--TAPNYITIV 427

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             L+AC   GL  +G E+F++M++ + ++P++EHYAC+VDLLGRAG  EQA + +  MP 
Sbjct: 428 NVLTACSRGGLTKEGYELFQTMKQRFGIEPRIEHYACVVDLLGRAGMEEQAYEIIQGMPM 487

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
           +P+  VW ALL  C++H   E+  +AA ++F+L+  D  G +V LSN LA+AG+W   T+
Sbjct: 488 RPSISVWGALLGGCKMHGKTELGRVAAEKLFELDPQDS-GNHVLLSNMLASAGRWAEATD 546

Query: 475 LREKMKLRGVLKDTGCSWV 493
           +R++MK  G+ KD G SW+
Sbjct: 547 VRKEMKNVGIKKDPGRSWI 565



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 113/452 (25%), Positives = 193/452 (42%), Gaps = 32/452 (7%)

Query: 48  LPSALQHYINSDTPFYGLKIHAHITKTGVKPNTN--ISIKLLILHLKCGALKYAGQMFDE 105
           L  A++  I S +P  G   HA   +  + P     I   L+ L+ K      A      
Sbjct: 16  LAGAVEAAIASRSPRLGRAAHARALRL-LAPALPPFICAHLVNLYSKLDLPGAAAAALAA 74

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
            P  T+ +Y   I+G  ++ +  ++LS    ++  G RP+ +TF    KA+    ++ P 
Sbjct: 75  DPSPTVVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAA----ASAP- 129

Query: 166 PR---NLGRMVHAQILKCDVKADDVLYT-ALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
           PR    +G  VHA  L+     DD   + A +D Y K G+ + AR +FD M  +NV+   
Sbjct: 130 PRCAAAVGPQVHALALRFGYLPDDAFVSCAALDMYFKTGRLALARRLFDEMPNRNVVAWN 189

Query: 222 SMISGFMSQGF-VEDAEEIF-------RKTVEKDIVVYNAMIEGYSISIETARKALEVHC 273
           ++++  +  G  +E  E  F          V      +NA      +S+       + H 
Sbjct: 190 AVMTNAVLDGRPIETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTCLSLGE-----QFHG 244

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
            + K  F +DV + +++VD Y KC  +  AR VFD M  +N  +W SM+  Y +NG   +
Sbjct: 245 FVAKCGFDKDVSVSNSMVDFYGKCRCMGKARLVFDGMGVRNSVSWCSMVVAYAQNGAEEE 304

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMV 393
           A  ++   +    +P        L+ C     +D GR +     R   +   +   + +V
Sbjct: 305 AFLVYLGARRAGEEPTDFMVSSLLTTCAGLLGLDLGRALHAVAARS-CIDANIFVASALV 363

Query: 394 DLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRP 453
           D+ G+ G ++ A +   EMP++ N   W A++       D   A    +E+  +   +  
Sbjct: 364 DMYGKCGGIQDAEQVFFEMPQR-NLVTWNAMIGGYAHIGDAWNALAVFDEM--IMGRETA 420

Query: 454 GAYVALSNTLAA---AGKWDSVTELREKMKLR 482
             Y+ + N L A    G      EL + MK R
Sbjct: 421 PNYITIVNVLTACSRGGLTKEGYELFQTMKQR 452


>gi|218184628|gb|EEC67055.1| hypothetical protein OsI_33800 [Oryza sativa Indica Group]
          Length = 513

 Score =  257 bits (657), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 139/398 (34%), Positives = 232/398 (58%), Gaps = 12/398 (3%)

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           +  R + ++  +IAGY +N   +E+L L+  ++    +P+G+TF+ +LKA+    S+   
Sbjct: 1   MSTRDMCSWTSLIAGYAQNDMPDEALGLLLGMLRGRFKPNGFTFASLLKAAGASASS--- 57

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
              +G  +HA  +K D   D  + +AL+D Y + G+   A  VFD +  KN +   ++I+
Sbjct: 58  --GIGEQIHALTVKYDWHDDVYVGSALLDMYARCGRMDMAIAVFDQLESKNGVSWNALIA 115

Query: 226 GFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFF 281
           GF  +G  E       E+ R   E     Y+++    +  I    +   VH  +IK+   
Sbjct: 116 GFARKGDGETTLLMFAEMQRNGFEATHFTYSSVFSAIA-GIGALEQGKWVHAHMIKSGER 174

Query: 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM 341
               +G+ ++DMYAK G + DAR+VFDH+ +K++ TW SM+  + + G   +A+  F  M
Sbjct: 175 LSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQYGLGREAVTHFEEM 234

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGS 401
           ++C V  N +TFL  L+AC H GLV +G++ F+ M ++++++P+++HY  +VDLLGRAG 
Sbjct: 235 RKCGVHLNQITFLSILTACSHGGLVKEGKQYFDMM-KEHNLEPEIDHYVTVVDLLGRAGL 293

Query: 402 LEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSN 461
           L  AL F+ +MP KP + VW ALL SCR+H + ++   AA+ +F+L+ +D  G  V L N
Sbjct: 294 LNDALVFIFKMPMKPTAAVWGALLGSCRMHKNAKIGQFAADHVFELDPDD-TGPPVLLYN 352

Query: 462 TLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
             A+ G+WD+   +R+ MK  GV K+  CSWV  E+ +
Sbjct: 353 IYASTGQWDAAARVRKMMKATGVKKEPACSWVEIENSV 390



 Score = 43.5 bits (101), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 23/92 (25%), Positives = 49/92 (53%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +HAH+ K+G + +  +   +L ++ K G++  A ++FD + ++ L  +N M+  + +
Sbjct: 161 GKWVHAHMIKSGERLSAFVGNTILDMYAKSGSMIDARKVFDHVDKKDLVTWNSMLTAFAQ 220

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
            G   E+++   ++   G   +  TF  IL A
Sbjct: 221 YGLGREAVTHFEEMRKCGVHLNQITFLSILTA 252


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  257 bits (657), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 156/477 (32%), Positives = 263/477 (55%), Gaps = 39/477 (8%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITK-TGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           A++LP+  Q  + S     G ++HA++ K + +  N+ ++  L+ ++     +  A ++F
Sbjct: 275 ASALPACSQLEMLS----LGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVF 330

Query: 104 DELP--QRTLSAYNYMIAGYLKNGQVEESLSLVRKL-VSSGERPDGYTFSMILKASTCCR 160
           D +P   R L  +N M+ GY + G  EE+L L  ++   +G  P   T + +L A  C R
Sbjct: 331 DMVPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPA--CAR 388

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           S     +     VH  +LK  +  +  +  AL+D Y + G    AR +F  +  ++V+  
Sbjct: 389 SETFAGKE---AVHGYVLKRGMADNPFVQNALMDLYARLGDMEAARWIFAAIEPRDVVSW 445

Query: 221 TSMISGFMSQGFVEDAEEIFRK------------------TVEKDIVVYNA----MIEGY 258
            ++I+G + QG + DA ++ R+                  T E+ +V  N     ++ G 
Sbjct: 446 NTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGC 505

Query: 259 SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTW 318
           ++ +    K  E+H   +++    D+ +GSALVDMYAKCG +  +R VFD + ++NV TW
Sbjct: 506 AM-LAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITW 564

Query: 319 TSMIDGYGKNGNPNQALELF-CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377
             +I  YG +G  ++A+ LF  M+     +PN VTF+ AL+AC H+G+VD+G E+F SM+
Sbjct: 565 NVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMK 624

Query: 378 RDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM-PEKPNSDVWAALLSSCRLHDDVEM 436
           R++ ++P  + +AC VD+LGRAG L++A   +  M P +     W++ L +CRLH +V +
Sbjct: 625 RNHGVQPTPDLHACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPL 684

Query: 437 ANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             IAA  +F+L   D    YV L N  +AAG W+  +E+R +M+ RGV K+ GCSW+
Sbjct: 685 GEIAAERLFQLEP-DEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWI 740



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 95/376 (25%), Positives = 170/376 (45%), Gaps = 30/376 (7%)

Query: 82  ISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG 141
           ++  LL  + +CG L  A  +F+ +P R    +N +IA      +   +L  +R ++  G
Sbjct: 98  VANALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEG 157

Query: 142 ERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD--VLYTALVDSYVKG 199
                +T   +L A     S++     LGR  HA  LK      D    + AL+  Y + 
Sbjct: 158 HPLSSFTLVSVLLAC----SHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARL 213

Query: 200 GKTSYARIVFDMMLEKN-----VICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVV 250
           G    A+++F  +   +     V+   +M+S  +  G   +A E+      + V  D + 
Sbjct: 214 GLVDDAQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGIT 273

Query: 251 YNAMIEGYSISIETARKALEVHCQLIKNV-FFEDVKLGSALVDMYAKCGKIDDARRVFDH 309
           + + +   S  +E      E+H  ++K+     +  + SALVDMYA   ++  ARRVFD 
Sbjct: 274 FASALPACS-QLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDM 332

Query: 310 MQ--QKNVFTWTSMIDGYGKNGNPNQALELFCMMQ-ECCVQPNYVTFLGALSACGHAGLV 366
           +    + +  W +M+ GY + G   +ALELF  M+ E  V P+  T  G L AC  +   
Sbjct: 333 VPGGHRQLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETF 392

Query: 367 DKGREIFES--MERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAAL 424
             G+E      ++R  +  P +++   ++DL  R G +E A +++    E  +   W  L
Sbjct: 393 -AGKEAVHGYVLKRGMADNPFVQN--ALMDLYARLGDMEAA-RWIFAAIEPRDVVSWNTL 448

Query: 425 LSSC----RLHDDVEM 436
           ++ C     +HD  ++
Sbjct: 449 ITGCVVQGHIHDAFQL 464



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 121/274 (44%), Gaps = 38/274 (13%)

Query: 145 DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV--KADDVLYTALVDSYVKGGKT 202
           D +      K++   RS + +     R +H   L+ D+       +  AL+ +Y + G  
Sbjct: 58  DHFALPPAAKSAAALRSLIAV-----RSIHGAALRRDLLHGFTPAVANALLTAYARCGDL 112

Query: 203 SYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS- 261
           + A  +F+ M  ++ +   S+I+             +FR+ +     + + ++EG+ +S 
Sbjct: 113 TAALALFNAMPSRDAVTFNSLIAALC----------LFRRWLPALDALRDMLLEGHPLSS 162

Query: 262 -------------IETARKALEVHCQLIKNVFFE-DVKLG-SALVDMYAKCGKIDDARRV 306
                         E  R   E H   +KN F + D +   +AL+ MYA+ G +DDA+ +
Sbjct: 163 FTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQML 222

Query: 307 FDHMQQKN-----VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           F  +   +     V TW +M+    ++G   +A+E+   M    V+P+ +TF  AL AC 
Sbjct: 223 FGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACS 282

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDL 395
              ++  GRE+   + +D  +       + +VD+
Sbjct: 283 QLEMLSLGREMHAYVLKDSDLAANSFVASALVDM 316


>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 815

 Score =  257 bits (657), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 143/431 (33%), Positives = 242/431 (56%), Gaps = 12/431 (2%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +HA+I K+G      +   +L +++K GA++ A   FD + +    ++N +++ +     
Sbjct: 375 VHAYIVKSGFAMLKGVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSGSN 434

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
            E+ L + +++   G   + YT+  +L+   CC S + L    G  VHA ILK  ++ D 
Sbjct: 435 CEQGLRIFKQMACEGFSANKYTYVSVLR---CCTSLMNL--RFGTQVHACILKSGLQNDT 489

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
            +   LVD Y + G  + A +VF+ + E++    T ++SG+      E   E FR  + +
Sbjct: 490 DVSRMLVDMYAQSGCFTSACLVFEQLKERDAFSWTVIMSGYAKTEEAEKVVEYFRSMLRE 549

Query: 247 DIVVYNAMIEGYSISI----ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
           +I   +A +   S+S+     +    L++H   IK+ +   V  G ALVDMY KCG I D
Sbjct: 550 NIRPSDATL-AVSLSVCSDMASLGSGLQLHSWAIKSGWNSSVVSG-ALVDMYVKCGNIAD 607

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           A  +F   + ++   W ++I GY ++G+  +AL+ F  M +   +P+ +TF+G LSAC H
Sbjct: 608 AEMLFHESETRDQVAWNTIICGYSQHGHGYKALDAFKQMVDEGKRPDGITFVGVLSACSH 667

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
           AGL+++GR+ F+S+   Y + P MEHYACMVD+L +AG L +A   + +MP  P+S +W 
Sbjct: 668 AGLLNEGRKYFKSLSSIYGITPTMEHYACMVDILSKAGRLVEAESLINQMPLAPDSSIWR 727

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
            +L +CR+H ++E+A  AA  +F+L  +D   + + LSN  A  G+W  VT +R  +   
Sbjct: 728 TILGACRIHRNIEIAERAAERLFELEPHDASSS-ILLSNIYADLGRWSDVTRVRNILLDH 786

Query: 483 GVLKDTGCSWV 493
           GV K+ GCSW+
Sbjct: 787 GVKKEPGCSWI 797



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/382 (23%), Positives = 183/382 (47%), Gaps = 12/382 (3%)

Query: 50  SALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQR 109
           +ALQ      T   G ++HA + ++ + P+T +   LL ++ KCG L  A ++FD +P R
Sbjct: 55  AALQDCAVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHR 114

Query: 110 TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL 169
            + A+  MI+ +   G  +++L +  ++   G  P+G+T + +LKA +    +       
Sbjct: 115 DIVAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHS-----KF 169

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
              VH Q++K +   D  + ++LV++Y   G+   A  V   + E++ +   ++++G+  
Sbjct: 170 THQVHGQVVKLNGLDDPYVGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYAR 229

Query: 230 QGFVEDAEEIFRKTVEK--DIVVYN-AMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
            G       I  K V    +I  Y    +    + +  A+    VH  +IK     D  L
Sbjct: 230 HGDYRRVMIIIEKLVASGDEISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVL 289

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
            S LV+MY++C   ++A  VF  + + +V   ++MI  + ++    +AL+LF  M    V
Sbjct: 290 NSCLVEMYSRCLSAEEAYEVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGV 349

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERD-YSMKPKMEHYACMVDLLGRAGSLEQA 405
           +PN+  F+G        G  +  R +   + +  ++M   +     ++++  + G+++ A
Sbjct: 350 KPNHYIFVGIAGVASRTGDANLCRSVHAYIVKSGFAMLKGVGD--AILNMYVKVGAVQDA 407

Query: 406 LKFVLEMPEKPNSDVWAALLSS 427
                ++  +P++  W  +LS+
Sbjct: 408 -TVTFDLIHEPDTFSWNTILSA 428



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 170/365 (46%), Gaps = 12/365 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++H  + K     +  +   L+  +  CG L  A  +   LP+R+  ++N ++ GY ++G
Sbjct: 172 QVHGQVVKLNGLDDPYVGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHG 231

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
                + ++ KLV+SG+    YT   +LK   CC   + L +  G+ VHA ++K  ++ D
Sbjct: 232 DYRRVMIIIEKLVASGDEISKYTLPTVLK---CCM-ELGLAK-YGQSVHASVIKRGLETD 286

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT-- 243
           +VL + LV+ Y +      A  VF  + E +V+  ++MIS F       +A ++F K   
Sbjct: 287 NVLNSCLVEMYSRCLSAEEAYEVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSG 346

Query: 244 --VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
             V+ +  ++   I G +     A     VH  ++K+ F     +G A+++MY K G + 
Sbjct: 347 MGVKPNHYIFVG-IAGVASRTGDANLCRSVHAYIVKSGFAMLKGVGDAILNMYVKVGAVQ 405

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           DA   FD + + + F+W +++  +    N  Q L +F  M       N  T++  L  C 
Sbjct: 406 DATVTFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMACEGFSANKYTYVSVLRCCT 465

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
               +  G ++   + +   ++   +    +VD+  ++G    A   V E  ++ ++  W
Sbjct: 466 SLMNLRFGTQVHACILKS-GLQNDTDVSRMLVDMYAQSGCFTSAC-LVFEQLKERDAFSW 523

Query: 422 AALLS 426
             ++S
Sbjct: 524 TVIMS 528



 Score =  112 bits (279), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 81/336 (24%), Positives = 160/336 (47%), Gaps = 10/336 (2%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           + ++  +LP+ L+  +      YG  +HA + K G++ +  ++  L+ ++ +C + + A 
Sbjct: 248 DEISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEAY 307

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           ++F  + +  +   + MI+ + ++    E+L L  K+   G +P+ Y F  I  A    R
Sbjct: 308 EVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGI--AGVASR 365

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           +      NL R VHA I+K        +  A+++ YVK G    A + FD++ E +    
Sbjct: 366 TG---DANLCRSVHAYIVKSGFAMLKGVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSW 422

Query: 221 TSMISGFMSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSISIETARKALEVHCQLI 276
            +++S F S    E    IF++        +   Y +++   + S+   R   +VH  ++
Sbjct: 423 NTILSAFYSGSNCEQGLRIFKQMACEGFSANKYTYVSVLRCCT-SLMNLRFGTQVHACIL 481

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           K+    D  +   LVDMYA+ G    A  VF+ +++++ F+WT ++ GY K     + +E
Sbjct: 482 KSGLQNDTDVSRMLVDMYAQSGCFTSACLVFEQLKERDAFSWTVIMSGYAKTEEAEKVVE 541

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
            F  M    ++P+  T   +LS C     +  G ++
Sbjct: 542 YFRSMLRENIRPSDATLAVSLSVCSDMASLGSGLQL 577



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 16/178 (8%)

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
            T R+  E+H +L+++    D  L  +L++MY KCG++ DARRVFD M  +++  WT+MI
Sbjct: 64  RTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPHRDIVAWTAMI 123

Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC---GHAGLVDK--GREI-FESM 376
             +   G+ +QAL++F  M +  + PN  T    L AC    H+    +  G+ +    +
Sbjct: 124 SAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQVHGQVVKLNGL 183

Query: 377 ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV-WAALLSSCRLHDD 433
           +  Y     +E Y          G L+ A   +L +PE+  SDV W ALL+    H D
Sbjct: 184 DDPYVGSSLVEAYT-------SCGELDAAETVLLGLPER--SDVSWNALLNGYARHGD 232



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 77/331 (23%), Positives = 141/331 (42%), Gaps = 57/331 (17%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G ++HA I K+G++ +T++S  L+ ++ + G    A  +F++L +R   ++  +++GY 
Sbjct: 472 FGTQVHACILKSGLQNDTDVSRMLVDMYAQSGCFTSACLVFEQLKERDAFSWTVIMSGYA 531

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           K  + E+ +   R ++    RP   T ++ L   + C     L   L   +H+  +K   
Sbjct: 532 KTEEAEKVVEYFRSMLRENIRPSDATLAVSL---SVCSDMASLGSGL--QLHSWAIKSGW 586

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            +  V+  ALVD YVK G                                + DAE +F +
Sbjct: 587 NS-SVVSGALVDMYVKCGN-------------------------------IADAEMLFHE 614

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC---GK 299
           +  +D V +N +I GYS       KAL+   Q++      D   G   V + + C   G 
Sbjct: 615 SETRDQVAWNTIICGYS-QHGHGYKALDAFKQMVDEGKRPD---GITFVGVLSACSHAGL 670

Query: 300 IDDARRVFDHMQQKNVFT-----WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           +++ R+ F  +      T     +  M+D   K G   +A  L   M    + P+   + 
Sbjct: 671 LNEGRKYFKSLSSIYGITPTMEHYACMVDILSKAGRLVEAESLINQMP---LAPDSSIWR 727

Query: 355 GALSACGHAGLVDKGREIFE-SMERDYSMKP 384
             L AC     + +  EI E + ER + ++P
Sbjct: 728 TILGAC----RIHRNIEIAERAAERLFELEP 754


>gi|115439575|ref|NP_001044067.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|20160882|dbj|BAB89820.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113533598|dbj|BAF05981.1| Os01g0715900 [Oryza sativa Japonica Group]
 gi|125571815|gb|EAZ13330.1| hypothetical protein OsJ_03251 [Oryza sativa Japonica Group]
          Length = 608

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 146/406 (35%), Positives = 236/406 (58%), Gaps = 12/406 (2%)

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           K G +  A ++FD + +RT +++N MIA Y   G+ +E+L L R+++S G RP+  T + 
Sbjct: 163 KSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLSEGARPNAITIAT 222

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           +   S C ++        G+   + I + D++ + +++TAL++ YVK      AR  FD 
Sbjct: 223 MF--SICAKTG---DLETGKWARSLIAEQDLQ-NMIVHTALMEMYVKCRAIDEARREFDR 276

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV 271
           M +++V+  ++MI+G+   G   ++ E+F +            + G  +S      + E+
Sbjct: 277 MQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGV-LSACAQLGSDEL 335

Query: 272 HCQLIKNVFFEDVKL----GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
             Q+  +V  +++ L    GSAL+DMY KCG +  AR VF+ M+ K V TW SM+ G   
Sbjct: 336 GGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLAL 395

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           NG    A+ L+  M E  VQPN +TF+  L+AC HAGLVD+G   F+ M+  + + P++E
Sbjct: 396 NGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVE 455

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           H AC+VDLL ++G L +A KF+ +M  +PN+ +W+ LLS+CR H DVE+A +AA+++  L
Sbjct: 456 HCACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAKLAASKLLVL 515

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
              D    YV LSN  A AG W  V E+R+ M+ + V K +  SW+
Sbjct: 516 EP-DNSSIYVLLSNIYADAGLWGDVREIRDLMRSKNVQKLSAYSWI 560



 Score =  128 bits (322), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 109/402 (27%), Positives = 171/402 (42%), Gaps = 79/402 (19%)

Query: 97  KYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAS 156
           + A  +FD +P+ T +    +I+   +    +E L     L   G         +++K+ 
Sbjct: 36  RAARHLFDAVPRPTPALCGTLISALSRLCSHQELLDAFSSLHRRGSDVPPGCVPLVVKSC 95

Query: 157 TCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216
               ++       G+ VH   +   +  D  + TALVD Y K G    A  VFD M  K+
Sbjct: 96  AILAAS-----RQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKD 150

Query: 217 VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY------------------ 258
            I    +I+G+   G V  A  +F   V +    +N+MI  Y                  
Sbjct: 151 PIPMNCLITGYSKSGDVVKARRLFDGMVRRTSASWNSMIACYAHGGEYQEALRLFRRMLS 210

Query: 259 ------SISI-------------ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
                 +I+I             ET + A      LI     +++ + +AL++MY KC  
Sbjct: 211 EGARPNAITIATMFSICAKTGDLETGKWAR----SLIAEQDLQNMIVHTALMEMYVKCRA 266

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ID+ARR FD MQQ++V  W++MI GY +NG P+++LELF  M+    +PN VT +G LSA
Sbjct: 267 IDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVLSA 326

Query: 360 CGHAGLVDKGREIFESME-------------------------RDYSMKPKMEH-----Y 389
           C   G  + G +I   +E                         R  S+  +MEH     +
Sbjct: 327 CAQLGSDELGGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITW 386

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSC 428
             M+  L   G  + A+    EM E   +PN   + ALL++C
Sbjct: 387 NSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVALLTAC 428



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 131/292 (44%), Gaps = 48/292 (16%)

Query: 79  NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLV 138
           N  +   L+ +++KC A+  A + FD + QR + A++ MIAGY +NG+  ESL L  ++ 
Sbjct: 250 NMIVHTALMEMYVKCRAIDEARREFDRMQQRDVVAWSTMIAGYAQNGRPHESLELFERMK 309

Query: 139 SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVK 198
           ++  +P+  T   +L A     S+      LG  + + +   ++     L +AL+D Y K
Sbjct: 310 ATSCKPNEVTLVGVLSACAQLGSD-----ELGGQIGSHVESQNLPLTSYLGSALIDMYTK 364

Query: 199 GGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAM 254
            G    AR VF+ M  K VI   SM+ G    GF +DA  ++++  E+D+    + + A+
Sbjct: 365 CGHVGRARSVFNRMEHKVVITWNSMMRGLALNGFAQDAITLYKEMTEEDVQPNEITFVAL 424

Query: 255 IEGYSISIETARKALEVHCQLIKN--VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ 312
           +   +            H  L+     FF+++K    +      C  I            
Sbjct: 425 LTACT------------HAGLVDQGMSFFKEMKTIHHVSPQVEHCACI------------ 460

Query: 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC-GHA 363
                    +D   K+G   +A +  C M+   V+PN V +   LSAC  HA
Sbjct: 461 ---------VDLLCKSGRLREAYKFICDME---VEPNAVIWSTLLSACRAHA 500



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 65/250 (26%), Positives = 107/250 (42%), Gaps = 29/250 (11%)

Query: 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
           +  +R+  +VHC  I      D+ + +ALVD YAK G +D A +VFD M  K+      +
Sbjct: 98  LAASRQGKQVHCHAIVRGLLGDIFVQTALVDFYAKNGDMDCAVKVFDEMPVKDPIPMNCL 157

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           I GY K+G+  +A  LF  M    V+    ++   ++   H G   +   +F  M  +  
Sbjct: 158 ITGYSKSGDVVKARRLFDGM----VRRTSASWNSMIACYAHGGEYQEALRLFRRMLSE-G 212

Query: 382 MKPKMEHYACMVDLLGRAGSLEQA--LKFVLEMPEKPNSDVWAALLS---SCRLHDDVEM 436
            +P     A M  +  + G LE     + ++   +  N  V  AL+     CR  D+   
Sbjct: 213 ARPNAITIATMFSICAKTGDLETGKWARSLIAEQDLQNMIVHTALMEMYVKCRAIDE--- 269

Query: 437 ANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK----------LRGVLK 486
              A  E  ++   D   A+  +    A  G+     EL E+MK          L GVL 
Sbjct: 270 ---ARREFDRMQQRDVV-AWSTMIAGYAQNGRPHESLELFERMKATSCKPNEVTLVGVL- 324

Query: 487 DTGCSWVGTE 496
            + C+ +G++
Sbjct: 325 -SACAQLGSD 333



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 56/272 (20%), Positives = 112/272 (41%), Gaps = 54/272 (19%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +I +H+    +   + +   L+ ++ KCG +  A  +F+ +  + +  +N M+ G   
Sbjct: 336 GGQIGSHVESQNLPLTSYLGSALIDMYTKCGHVGRARSVFNRMEHKVVITWNSMMRGLAL 395

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKAST---CCRSNVPLPRNLGRMVHA--QIL 178
           NG  +++++L +++     +P+  TF  +L A T        +   + +  + H   Q+ 
Sbjct: 396 NGFAQDAITLYKEMTEEDVQPNEITFVALLTACTHAGLVDQGMSFFKEMKTIHHVSPQVE 455

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
            C           +VD   K G+   A + + DM +E N +  ++++S   +   VE A+
Sbjct: 456 HC---------ACIVDLLCKSGRLREAYKFICDMEVEPNAVIWSTLLSACRAHADVELAK 506

Query: 238 EIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
               K +         ++E  + SI            L+ N+              YA  
Sbjct: 507 LAASKLL---------VLEPDNSSIYV----------LLSNI--------------YADA 533

Query: 298 GKIDDARRVFDHMQQKNV-----FTWTSMIDG 324
           G   D R + D M+ KNV     ++W  + DG
Sbjct: 534 GLWGDVREIRDLMRSKNVQKLSAYSWIEL-DG 564


>gi|449488311|ref|XP_004157997.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 150/411 (36%), Positives = 230/411 (55%), Gaps = 19/411 (4%)

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149
           + + G L  A  +FDE+P+R + ++  MI GY++N QV+    + RKL       +  ++
Sbjct: 263 YCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVD----IARKLFEVMPEKNEVSW 318

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLY-TALVDSYVKGGKTSYARIV 208
           + +LK  T C          GR+  A  L   +    V+   A++  + + G+   AR V
Sbjct: 319 TAMLKGYTNC----------GRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQV 368

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV-YNAMIEGYSISIETAR- 266
           FD M EK+    ++MI  +  +G   DA E+FR    + I   + ++I   S+    A  
Sbjct: 369 FDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANL 428

Query: 267 -KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
               E+H QL+++ F  DV + S L+ MY KCG +  A++VFD    K+V  W S+I GY
Sbjct: 429 DHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGY 488

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
            ++G   +AL +F  M    + P+ VTF+G LSAC + G V KG EIF SME  Y ++ K
Sbjct: 489 AQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQK 548

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIF 445
           +EHYACMVDLLGRAG L +A+  + +MP + ++ +W ALL +CR H  +++A +AA ++ 
Sbjct: 549 IEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLL 608

Query: 446 KLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
            L   +  G ++ LSN  A+ G+WD V ELR  M+ R V K  GCSW+  E
Sbjct: 609 VLEPKN-AGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVE 658



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 150/290 (51%), Gaps = 20/290 (6%)

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149
           ++  G +  A ++FD +P+R + ++  M+ GY+K G + E+ +L  ++      P+    
Sbjct: 170 YINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQM------PEKNVV 223

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHA-QILKCDVKADDVLYTALVDSYVKGGKTSYARIV 208
           S  +      +         GR+  A ++     + D V  T ++  Y + G+   AR++
Sbjct: 224 SWTVMLGGLLQE--------GRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARML 275

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKA 268
           FD M  +NV+  T+MI+G++    V+ A ++F    EK+ V + AM++GY     T    
Sbjct: 276 FDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGY-----TNCGR 330

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
           L+   +L   +  + V   +A++  + + G++  AR+VFD M++K+  TW++MI  Y + 
Sbjct: 331 LDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERK 390

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER 378
           G    ALELF MMQ   ++PN+ + +  LS C     +D GREI   + R
Sbjct: 391 GLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVR 440



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 166/342 (48%), Gaps = 63/342 (18%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           L+  + + G ++ A  +FDE+  + + ++N ++AGY +N + +E+ ++  K+    ER  
Sbjct: 104 LITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM---SER-- 158

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
                                                  + + +  LV  Y+  G  + A
Sbjct: 159 ---------------------------------------NTISWNGLVSGYINNGMINEA 179

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETA 265
           R VFD M E+NV+  T+M+ G++ +G + +AE +F +  EK++V +  M+ G    ++  
Sbjct: 180 REVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGL---LQEG 236

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
           R  ++  C+L   +  +DV   + ++  Y + G++ +AR +FD M ++NV +WT+MI GY
Sbjct: 237 R--IDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGY 294

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
            +N   + A +LF +M E     N V++   L    + G +D+  E+F +M       P 
Sbjct: 295 VQNQQVDIARKLFEVMPE----KNEVSWTAMLKGYTNCGRLDEASELFNAM-------PI 343

Query: 386 MEHYAC--MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
               AC  M+   G+ G + +A +   +M EK +   W+A++
Sbjct: 344 KSVVACNAMILCFGQNGEVPKARQVFDQMREK-DEGTWSAMI 384



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 82/156 (52%), Gaps = 22/156 (14%)

Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347
           ++L+  Y++ G+I+ AR VFD M+ KN+ +W S++ GY +N  P +A  +F  M E    
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE---- 157

Query: 348 PNYVTFLGALSACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
            N +++ G +S   + G++++ RE+F+ M ER+      +  +  MV    + G + +A 
Sbjct: 158 RNTISWNGLVSGYINNGMINEAREVFDRMPERN------VVSWTAMVRGYVKEGMISEAE 211

Query: 407 KFVLEMPEKPNSDVWAALL----------SSCRLHD 432
               +MPEK N   W  +L           +CRL D
Sbjct: 212 TLFWQMPEK-NVVSWTVMLGGLLQEGRIDEACRLFD 246



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 14/193 (7%)

Query: 35  NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           N+ SL + L+  +  + L H         G +IHA + ++    +  ++  LL +++KCG
Sbjct: 411 NFPSLISVLSVCAGLANLDH---------GREIHAQLVRSQFDLDVYVASVLLSMYIKCG 461

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
            L  A Q+FD    + +  +N +I GY ++G   E+L +   +  SG  PD  TF  +L 
Sbjct: 462 NLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLS 521

Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM-L 213
           A   C     + + L  + ++   K  V+     Y  +VD   + GK + A  + + M +
Sbjct: 522 A---CSYTGNVKKGL-EIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPM 577

Query: 214 EKNVICSTSMISG 226
           E + I   +++  
Sbjct: 578 EADAIIWGALLGA 590


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 152/432 (35%), Positives = 238/432 (55%), Gaps = 11/432 (2%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IH  + K     +  I + L+ ++ K G L  A ++F+ +P++ L  +N +I+G    G
Sbjct: 326 QIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGG 385

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              ESLSL  ++   G   +  T + +LK++    +     +     VHA   K    +D
Sbjct: 386 CHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQ-----VHALAEKIGFLSD 440

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----R 241
             +   L+DSY K     YA  VF+     N+I  TSMI+        EDA ++F    R
Sbjct: 441 SHVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLR 500

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
           K +E D  V ++++   + S+    +  +VH  LIK  F  DV  G+ALV  YAKCG I+
Sbjct: 501 KGLEPDPFVLSSLLNACA-SLSAYEQGKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIE 559

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           DA   F  +  K V +W++MI G  ++G+  +AL++F  M +  + PN++T    L AC 
Sbjct: 560 DADLAFSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACN 619

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
           HAGLVD+ +  F SM+  + +    EHY+CM+DLLGRAG L+ A++ V  MP + N+ VW
Sbjct: 620 HAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVW 679

Query: 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
            ALL++ R+H D E+  +AA ++F L   ++ G +V L+NT A+AG WD V ++R+ MK 
Sbjct: 680 GALLAASRVHRDPELGKLAAEKLFVLEP-EKSGTHVLLANTYASAGMWDEVAKVRKLMKD 738

Query: 482 RGVLKDTGCSWV 493
             V K+   SWV
Sbjct: 739 SKVKKEPAMSWV 750



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 96/371 (25%), Positives = 172/371 (46%), Gaps = 8/371 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G K+HA + +TG   +   +  L+ ++ K G +  A  +F ++P+  + ++N  I+G + 
Sbjct: 221 GRKVHAMVVRTGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVL 280

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G  + +L L+ ++ SSG  P+ +T S ILKA             LGR +H  ++K    
Sbjct: 281 HGHDQHALELLLQMKSSGLVPNVFTLSSILKACA---GAGAGAFALGRQIHGFMIKACAD 337

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
           +DD +  ALVD Y K G    AR VF+ +  K+++   ++ISG    G   ++  +F   
Sbjct: 338 SDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRM 397

Query: 241 RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           RK          A +   + S+E      +VH    K  F  D  + + L+D Y KC  +
Sbjct: 398 RKEGSDINRTTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCL 457

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
             A +VF+     N+  +TSMI    +  +   A++LF  M    ++P+       L+AC
Sbjct: 458 RYANKVFEEHSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNAC 517

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
                 ++G+++   + +   M       A +V    + GS+E A      +P+K     
Sbjct: 518 ASLSAYEQGKQVHAHLIKRKFMTDVFAGNA-LVYTYAKCGSIEDADLAFSGLPDKGVVS- 575

Query: 421 WAALLSSCRLH 431
           W+A++     H
Sbjct: 576 WSAMIGGLAQH 586



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 113/393 (28%), Positives = 175/393 (44%), Gaps = 28/393 (7%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           S+   L  Y  + + F G  IHAH+ K+G+         LL  + KC     A ++FDE 
Sbjct: 6   SISPLLTRYAATQSLFLGAHIHAHLLKSGLL--HAFRNHLLSFYSKCRLPGSARRVFDET 63

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P     +++ ++  Y  N    E+L+  R + + G R + +   ++LK    C  +    
Sbjct: 64  PDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLK----CAPDA--- 116

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFD-MMLEKNVICSTSMIS 225
             LG  VHA  +   +  D  +  ALV  Y   G    AR VFD    ++N +    M+S
Sbjct: 117 -GLGVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMS 175

Query: 226 GFMSQGFVEDAEEIFRKTVEKDI--------VVYNAMIEGYSISIETARKALEVHCQLIK 277
            F+      DA E+F + V   +         V NA     S  +E  RK   VH  +++
Sbjct: 176 AFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTG--SRDLEAGRK---VHAMVVR 230

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
             + +DV   +ALVDMY+K G I  A  VF  + + +V +W + I G   +G+   ALEL
Sbjct: 231 TGYDKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALEL 290

Query: 338 FCMMQECCVQPNYVTFLGALS--ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDL 395
              M+   + PN  T    L   A   AG    GR+I   M +  +        A +VD+
Sbjct: 291 LLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDDYIGVA-LVDM 349

Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
             + G L+ A K    +P K +  +W AL+S C
Sbjct: 350 YAKYGLLDDARKVFEWIPRK-DLLLWNALISGC 381



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 134/291 (46%), Gaps = 10/291 (3%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
           T+L + L+   + +      ++HA   K G   ++++   L+  + KC  L+YA ++F+E
Sbjct: 407 TTLAAVLKSTASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEE 466

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
                + A+  MI    +    E+++ L  +++  G  PD +  S +L A   C S    
Sbjct: 467 HSSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNA---CASLSAY 523

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
            +  G+ VHA ++K     D     ALV +Y K G    A + F  + +K V+  ++MI 
Sbjct: 524 EQ--GKQVHAHLIKRKFMTDVFAGNALVYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIG 581

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV--HCQLIKNVFFED 283
           G    G  + A ++FR+ V++ I   +  +     +   A    E   +   +K +F  D
Sbjct: 582 GLAQHGHGKRALDVFRRMVDERIAPNHITLTSVLCACNHAGLVDEAKGYFSSMKEMFGID 641

Query: 284 V--KLGSALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNP 331
              +  S ++D+  + GK+DDA  + + M  + N   W +++     + +P
Sbjct: 642 RTEEHYSCMIDLLGRAGKLDDAMELVNSMPFEANAAVWGALLAASRVHRDP 692


>gi|449453226|ref|XP_004144359.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Cucumis sativus]
          Length = 785

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 150/411 (36%), Positives = 230/411 (55%), Gaps = 19/411 (4%)

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149
           + + G L  A  +FDE+P+R + ++  MI GY++N QV+    + RKL       +  ++
Sbjct: 263 YCQVGRLVEARMLFDEMPRRNVVSWTTMITGYVQNQQVD----IARKLFEVMPEKNEVSW 318

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLY-TALVDSYVKGGKTSYARIV 208
           + +LK  T C          GR+  A  L   +    V+   A++  + + G+   AR V
Sbjct: 319 TAMLKGYTNC----------GRLDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQV 368

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV-YNAMIEGYSISIETAR- 266
           FD M EK+    ++MI  +  +G   DA E+FR    + I   + ++I   S+    A  
Sbjct: 369 FDQMREKDEGTWSAMIKVYERKGLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANL 428

Query: 267 -KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
               E+H QL+++ F  DV + S L+ MY KCG +  A++VFD    K+V  W S+I GY
Sbjct: 429 DHGREIHAQLVRSQFDLDVYVASVLLSMYIKCGNLAKAKQVFDRFAVKDVVMWNSIITGY 488

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
            ++G   +AL +F  M    + P+ VTF+G LSAC + G V KG EIF SME  Y ++ K
Sbjct: 489 AQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLSACSYTGNVKKGLEIFNSMETKYQVEQK 548

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIF 445
           +EHYACMVDLLGRAG L +A+  + +MP + ++ +W ALL +CR H  +++A +AA ++ 
Sbjct: 549 IEHYACMVDLLGRAGKLNEAMDLIEKMPMEADAIIWGALLGACRTHMKLDLAEVAAKKLL 608

Query: 446 KLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
            L   +  G ++ LSN  A+ G+WD V ELR  M+ R V K  GCSW+  E
Sbjct: 609 VLEPKN-AGPFILLSNIYASQGRWDDVAELRRNMRDRRVSKYPGCSWIVVE 658



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 150/290 (51%), Gaps = 20/290 (6%)

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149
           ++  G +  A ++FD +P+R + ++  M+ GY+K G + E+ +L  ++      P+    
Sbjct: 170 YINNGMINEAREVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQM------PEKNVV 223

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHA-QILKCDVKADDVLYTALVDSYVKGGKTSYARIV 208
           S  +      +         GR+  A ++     + D V  T ++  Y + G+   AR++
Sbjct: 224 SWTVMLGGLLQE--------GRIDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARML 275

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKA 268
           FD M  +NV+  T+MI+G++    V+ A ++F    EK+ V + AM++GY     T    
Sbjct: 276 FDEMPRRNVVSWTTMITGYVQNQQVDIARKLFEVMPEKNEVSWTAMLKGY-----TNCGR 330

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
           L+   +L   +  + V   +A++  + + G++  AR+VFD M++K+  TW++MI  Y + 
Sbjct: 331 LDEASELFNAMPIKSVVACNAMILCFGQNGEVPKARQVFDQMREKDEGTWSAMIKVYERK 390

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER 378
           G    ALELF MMQ   ++PN+ + +  LS C     +D GREI   + R
Sbjct: 391 GLELDALELFRMMQREGIRPNFPSLISVLSVCAGLANLDHGREIHAQLVR 440



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 166/342 (48%), Gaps = 63/342 (18%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           L+  + + G ++ A  +FDE+  + + ++N ++AGY +N + +E+ ++  K+    ER  
Sbjct: 104 LITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKM---SER-- 158

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
                                                  + + +  LV  Y+  G  + A
Sbjct: 159 ---------------------------------------NTISWNGLVSGYINNGMINEA 179

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETA 265
           R VFD M E+NV+  T+M+ G++ +G + +AE +F +  EK++V +  M+ G    ++  
Sbjct: 180 REVFDRMPERNVVSWTAMVRGYVKEGMISEAETLFWQMPEKNVVSWTVMLGGL---LQEG 236

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
           R  ++  C+L   +  +DV   + ++  Y + G++ +AR +FD M ++NV +WT+MI GY
Sbjct: 237 R--IDEACRLFDMMPEKDVVTRTNMIGGYCQVGRLVEARMLFDEMPRRNVVSWTTMITGY 294

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
            +N   + A +LF +M E     N V++   L    + G +D+  E+F +M       P 
Sbjct: 295 VQNQQVDIARKLFEVMPE----KNEVSWTAMLKGYTNCGRLDEASELFNAM-------PI 343

Query: 386 MEHYAC--MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
               AC  M+   G+ G + +A +   +M EK +   W+A++
Sbjct: 344 KSVVACNAMILCFGQNGEVPKARQVFDQMREK-DEGTWSAMI 384



 Score = 77.0 bits (188), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 82/156 (52%), Gaps = 22/156 (14%)

Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347
           ++L+  Y++ G+I+ AR VFD M+ KN+ +W S++ GY +N  P +A  +F  M E    
Sbjct: 102 NSLITRYSRLGQIEKARVVFDEMRDKNIISWNSIVAGYFQNKRPQEAQNMFDKMSE---- 157

Query: 348 PNYVTFLGALSACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
            N +++ G +S   + G++++ RE+F+ M ER+      +  +  MV    + G + +A 
Sbjct: 158 RNTISWNGLVSGYINNGMINEAREVFDRMPERN------VVSWTAMVRGYVKEGMISEAE 211

Query: 407 KFVLEMPEKPNSDVWAALL----------SSCRLHD 432
               +MPEK N   W  +L           +CRL D
Sbjct: 212 TLFWQMPEK-NVVSWTVMLGGLLQEGRIDEACRLFD 246



 Score = 58.5 bits (140), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 48/193 (24%), Positives = 90/193 (46%), Gaps = 14/193 (7%)

Query: 35  NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           N+ SL + L+  +  + L H         G +IHA + ++    +  ++  LL +++KCG
Sbjct: 411 NFPSLISVLSVCAGLANLDH---------GREIHAQLVRSQFDLDVYVASVLLSMYIKCG 461

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
            L  A Q+FD    + +  +N +I GY ++G   E+L +   +  SG  PD  TF  +L 
Sbjct: 462 NLAKAKQVFDRFAVKDVVMWNSIITGYAQHGLGVEALRVFHDMHFSGIMPDDVTFVGVLS 521

Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM-L 213
           A   C     + + L  + ++   K  V+     Y  +VD   + GK + A  + + M +
Sbjct: 522 A---CSYTGNVKKGL-EIFNSMETKYQVEQKIEHYACMVDLLGRAGKLNEAMDLIEKMPM 577

Query: 214 EKNVICSTSMISG 226
           E + I   +++  
Sbjct: 578 EADAIIWGALLGA 590


>gi|222631044|gb|EEE63176.1| hypothetical protein OsJ_17985 [Oryza sativa Japonica Group]
          Length = 745

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 156/490 (31%), Positives = 256/490 (52%), Gaps = 66/490 (13%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++H +  + G   +  +   L+  + KCG ++ A ++F+ +  + + ++N M+AGY ++G
Sbjct: 141 EVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFKDVVSWNAMVAGYSQSG 200

Query: 126 QVE-----------------------------------ESLSLVRKLVSSGERPDGYTFS 150
             +                                   E+L++ R+++ SG  P+  T  
Sbjct: 201 NFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVFRQMIFSGSLPNCVTII 260

Query: 151 MILKASTCCRSNVPLPRNLGRMVHAQILK-CDVKADD---------VLYTALVDSYVKGG 200
            +L A   C S     +  G  +HA  LK C +  D+         ++Y AL+D Y K  
Sbjct: 261 SVLSA---CASLGAFSQ--GMEIHAYSLKNCLLTLDNDFGGEDEDLMVYNALIDMYSKCR 315

Query: 201 KTSYARIVFD--MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY 258
               AR +FD   + E+NV+  T MI G    G   DA ++F + + +    Y      Y
Sbjct: 316 SFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP---YGVAPNAY 372

Query: 259 SIS--------IETARKALEVHCQLIKNVFFEDVK--LGSALVDMYAKCGKIDDARRVFD 308
           +IS        +   R   ++H  ++++  ++     + + L++MY+KCG +D AR VFD
Sbjct: 373 TISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFD 432

Query: 309 HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDK 368
            M QK+  +WTSM+ GYG +G  ++AL++F  M++    P+ +TFL  L AC H G+VD+
Sbjct: 433 SMSQKSAISWTSMMTGYGMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHCGMVDQ 492

Query: 369 GREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
           G   F+SM  DY + P+ EHYA  +DLL R G L++A K V +MP +P + VW ALLS+C
Sbjct: 493 GLSYFDSMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSAC 552

Query: 429 RLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDT 488
           R+H +VE+A  A N++ ++NA +  G+Y  +SN  A AG+W  V  +R  MK  G+ K  
Sbjct: 553 RVHSNVELAEHALNKLVEMNA-ENDGSYTLISNIYATAGRWKDVARIRHLMKKSGIKKRP 611

Query: 489 GCSWVGTESG 498
           GCSWV  + G
Sbjct: 612 GCSWVQGQKG 621



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 117/449 (26%), Positives = 208/449 (46%), Gaps = 72/449 (16%)

Query: 47  SLPSALQHYINSDTPFY--GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           +LP  L+     + P Y  G   H  I   G + N  I   L+ ++ +CG+L+ A  +FD
Sbjct: 12  TLPHVLK--ACGELPSYRCGSAFHGLICCNGFESNVFICNALVAMYSRCGSLEEASMIFD 69

Query: 105 ELPQRTLS---AYNYMIAGYLKNGQVEESLSLVRKLV------SSGERPDGYTFSMILKA 155
           E+ QR +    ++N +++ ++K+     +L L  K+        + ER D  +   IL A
Sbjct: 70  EITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTNERSDIISIVNILPA 129

Query: 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
              C S   +P+   + VH   ++     D  +  AL+D+Y K G    A  VF+MM  K
Sbjct: 130 ---CGSLKAVPQT--KEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAVKVFNMMEFK 184

Query: 216 NVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYS------------ 259
           +V+   +M++G+   G  + A E+F    ++ +  D+V + A+I GYS            
Sbjct: 185 DVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRGCSHEALNVF 244

Query: 260 ---------------ISIETA-------RKALEVHCQLIKNVFF----------EDVKLG 287
                          IS+ +A        + +E+H   +KN             ED+ + 
Sbjct: 245 RQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFGGEDEDLMVY 304

Query: 288 SALVDMYAKCGKIDDARRVFDH--MQQKNVFTWTSMIDGYGKNGNPNQALELFCMM--QE 343
           +AL+DMY+KC     AR +FD   ++++NV TWT MI G+ + G+ N AL+LF  M  + 
Sbjct: 305 NALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMIGGHAQYGDSNDALKLFVEMISEP 364

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA-CMVDLLGRAGSL 402
             V PN  T    L AC H   +  G++I   + R +         A C++++  + G +
Sbjct: 365 YGVAPNAYTISCILMACAHLAAIRIGKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDV 424

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           + A + V +   + ++  W ++++   +H
Sbjct: 425 DTA-RHVFDSMSQKSAISWTSMMTGYGMH 452



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/346 (25%), Positives = 151/346 (43%), Gaps = 62/346 (17%)

Query: 137 LVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196
           ++ +G R D +T   +LKA       +P  R  G   H  I     +++  +  ALV  Y
Sbjct: 1   MLRAGTRLDHFTLPHVLKAC----GELPSYR-CGSAFHGLICCNGFESNVFICNALVAMY 55

Query: 197 VKGGKTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRK---------TV 244
            + G    A ++FD + ++   +VI   S++S  +       A ++F K         T 
Sbjct: 56  SRCGSLEEASMIFDEITQRGIDDVISWNSIVSAHVKSSNAWTALDLFSKMTLIVHEKPTN 115

Query: 245 EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDAR 304
           E+  ++    I     S++   +  EVH   I+N  F DV +G+AL+D YAKCG +++A 
Sbjct: 116 ERSDIISIVNILPACGSLKAVPQTKEVHGNAIRNGTFLDVFVGNALIDAYAKCGLMENAV 175

Query: 305 RVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM--------------------QEC 344
           +VF+ M+ K+V +W +M+ GY ++GN   A ELF  M                    Q  
Sbjct: 176 KVFNMMEFKDVVSWNAMVAGYSQSGNFKAAFELFKNMRKENIPLDMVTWTAVIAGYSQRG 235

Query: 345 CVQ---------------PNYVTFLGALSACGHAGLVDKGREIFE--------SMERDYS 381
           C                 PN VT +  LSAC   G   +G EI          +++ D+ 
Sbjct: 236 CSHEALNVFRQMIFSGSLPNCVTIISVLSACASLGAFSQGMEIHAYSLKNCLLTLDNDFG 295

Query: 382 MKPK-MEHYACMVDLLGRAGSLEQALKFVLEMP-EKPNSDVWAALL 425
            + + +  Y  ++D+  +  S + A     ++P E+ N   W  ++
Sbjct: 296 GEDEDLMVYNALIDMYSKCRSFKAARSIFDDIPLEERNVVTWTVMI 341



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 47/192 (24%), Positives = 85/192 (44%), Gaps = 21/192 (10%)

Query: 64  GLKIHAHITKTGVKPNTNISIK--LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           G +IHA++ +     ++   +   L+ ++ KCG +  A  +FD + Q++  ++  M+ GY
Sbjct: 390 GKQIHAYVLRHHQYDSSAYFVANCLINMYSKCGDVDTARHVFDSMSQKSAISWTSMMTGY 449

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
             +G+  E+L +  K+  +G  PD  TF ++L A + C            MV   +   D
Sbjct: 450 GMHGRGSEALDIFDKMRKAGFVPDDITFLVVLYACSHC-----------GMVDQGLSYFD 498

Query: 182 VKADDV-------LYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFV 233
             + D         Y   +D   + G+   A + V DM +E   +   +++S       V
Sbjct: 499 SMSADYGLTPRAEHYAYAIDLLARFGRLDKAWKTVKDMPMEPTAVVWVALLSACRVHSNV 558

Query: 234 EDAEEIFRKTVE 245
           E AE    K VE
Sbjct: 559 ELAEHALNKLVE 570


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 149/456 (32%), Positives = 253/456 (55%), Gaps = 15/456 (3%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L+ +S  S ++   N     +  ++H  + K G   + NI   L++ + KC A+  A ++
Sbjct: 297 LSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALRL 356

Query: 103 FDELP-QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161
           F E      + ++  MI+G+L+N   EE++ L  ++   G RP+ +T+S+IL A      
Sbjct: 357 FKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTA------ 410

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
              LP      VHAQ++K + +    + TAL+D+YVK GK   A  VF  +  K+++  +
Sbjct: 411 ---LPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWS 467

Query: 222 SMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIK 277
           +M++G+   G  E A +IF    +  V+ +   +++++   + +  +  +  + H   IK
Sbjct: 468 AMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIK 527

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
           +     + + SAL+ MYAK G I+ A  VF   ++K++ +W SMI GY ++G   +AL++
Sbjct: 528 SRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDV 587

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
           F  M++  V+ + VTF+G  +AC HAGLV++G + F+ M RD  + P  EH +CMVDL  
Sbjct: 588 FKEMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYS 647

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457
           RAG LE+A+K +  MP    S +W  +L++CR+H   E+  +AA +I  +   D   AYV
Sbjct: 648 RAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMIPED-SAAYV 706

Query: 458 ALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            LSN  A +G W    ++R+ M  R V K+ G SW+
Sbjct: 707 LLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWI 742



 Score =  134 bits (336), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 186/378 (49%), Gaps = 26/378 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           GL++H  + K G+     +S  L+ L+LKCG ++ A  +FD+   +++  +N MI+GY  
Sbjct: 217 GLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAA 276

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG   E+L +   +  +  R    +F+ I+K    C +N+   R     +H  ++K    
Sbjct: 277 NGLDLEALGMFYSMRLNHVRLSESSFASIIK---LC-ANLKELR-FTEQLHCSVVKYGFV 331

Query: 184 ADDVLYTALVDSYVKG-GKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-- 240
            D  + TAL+ +Y K        R+  +     NV+  T+MISGF+     E+A  +F  
Sbjct: 332 FDQNIRTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSE 391

Query: 241 --RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
             RK V  +   Y+ ++    +   +     EVH Q++K  +     +G+AL+D Y K G
Sbjct: 392 MKRKGVRPNEFTYSVILTALPVISPS-----EVHAQVVKTNYERSSTVGTALLDAYVKLG 446

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           K+D+A +VF  +  K++  W++M+ GY + G    A+++F  + +  V+PN  TF   L+
Sbjct: 447 KVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILN 506

Query: 359 ACGH-AGLVDKGREIFESMERDYSMKPKMEHYAC----MVDLLGRAGSLEQALKFVLEMP 413
            C      + +G++        +++K +++   C    ++ +  + G +E A + V +  
Sbjct: 507 VCAATTASMGQGKQF-----HGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEE-VFKRQ 560

Query: 414 EKPNSDVWAALLSSCRLH 431
            + +   W +++S    H
Sbjct: 561 REKDLVSWNSMISGYAQH 578



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/272 (30%), Positives = 137/272 (50%), Gaps = 12/272 (4%)

Query: 96  LKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           L YA  +FD+ P R   +Y  ++ G+ ++G+ +E+  L   +   G   D   FS +LK 
Sbjct: 47  LYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLKV 106

Query: 156 S-TCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE 214
           S T C          GR +H Q +K     D  + T+LVD+Y+KG      R VFD M E
Sbjct: 107 SATLC------DELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKE 160

Query: 215 KNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALE 270
           +NV+  T++ISG+      E+   +F +      + +   + A + G         + L+
Sbjct: 161 RNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAAL-GVLAEEGVGGRGLQ 219

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           VH  ++KN   + + + ++L+++Y KCG +  AR +FD  + K+V TW SMI GY  NG 
Sbjct: 220 VHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGL 279

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGH 362
             +AL +F  M+   V+ +  +F   +  C +
Sbjct: 280 DLEALGMFYSMRLNHVRLSESSFASIIKLCAN 311



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 103/405 (25%), Positives = 184/405 (45%), Gaps = 48/405 (11%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
            +G ++H    K G   + ++   L+  ++K    K    +FDE+ +R +  +  +I+GY
Sbjct: 114 LFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGY 173

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            +N   EE L+L  ++   G +P+ +TF+  L         V      G  VH  ++K  
Sbjct: 174 ARNSLNEEVLTLFMRMQDEGTQPNSFTFAAAL--GVLAEEGVG---GRGLQVHTVVVKNG 228

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +     +  +L++ Y+K G    ARI+FD    K+V+   SMISG+ + G   +A  +F 
Sbjct: 229 LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFY 288

Query: 242 KTVEKDIVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
                 + +     A I     +++  R   ++HC ++K  F  D  + +AL+  Y+KC 
Sbjct: 289 SMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCM 348

Query: 299 KIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF---L 354
            + DA R+F       NV +WT+MI G+ +N    +A+ LF  M+   V+PN  T+   L
Sbjct: 349 AMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPNEFTYSVIL 408

Query: 355 GAL--------------------SACGHA--------GLVDKGREIFESMERDYSMKPKM 386
            AL                    S  G A        G VD+  ++F  ++        +
Sbjct: 409 TALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVDEAAKVFSGID-----NKDI 463

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSC 428
             ++ M+    +AG  E A+K   E+ +   KPN   ++++L+ C
Sbjct: 464 VAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVC 508



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 63/227 (27%), Positives = 119/227 (52%), Gaps = 7/227 (3%)

Query: 204 YARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYS 259
           YA  +FD   +++    TS++ GF   G  ++A  +F       +E D  +++++++  S
Sbjct: 49  YAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSVLK-VS 107

Query: 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWT 319
            ++       ++HCQ IK  F +DV +G++LVD Y K     D R VFD M+++NV TWT
Sbjct: 108 ATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNVVTWT 167

Query: 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD 379
           ++I GY +N    + L LF  MQ+   QPN  TF  AL      G+  +G ++   + ++
Sbjct: 168 TLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKN 227

Query: 380 YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
             +   +     +++L  + G++ +A + + +  E  +   W +++S
Sbjct: 228 -GLDKTIPVSNSLINLYLKCGNVRKA-RILFDKTEVKSVVTWNSMIS 272


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 162/550 (29%), Positives = 273/550 (49%), Gaps = 77/550 (14%)

Query: 12  FSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHI 71
           FS  H  H+ L   +Q     L   + +        LPSA++            ++H   
Sbjct: 89  FSKFHQFHHALSTFSQMLTRGLMPDNRV--------LPSAVKACAGLSALKPARQVHGIA 140

Query: 72  TKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESL 131
           + +G   ++ +   L+ +++KC  ++ A ++FD + +  + +++ ++A Y + G V+E+ 
Sbjct: 141 SVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAK 200

Query: 132 SLVRKLVSSGERPD---------GYTFS------------MILKA----STCCRSNVPLP 166
            L  ++  SG +P+         G+  S            M L+      T   S +P  
Sbjct: 201 RLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAV 260

Query: 167 RNL-----GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
            +L     G ++H  ++K  + +D  + +AL+D Y K   TS    VFD M   +V    
Sbjct: 261 GDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCN 320

Query: 222 SMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMI-----EGYSISIETARKALEV- 271
           + I G    G VE +  +FR+     +E ++V + +MI      G  I      + +++ 
Sbjct: 321 AFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALELFREMQIA 380

Query: 272 ----------------------------HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
                                       HC  ++     DV +GSAL+DMYAKCG+I  +
Sbjct: 381 GVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRIQAS 440

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
           R  FD +  KN+  W ++I GY  +G   +A+E+F +MQ    +P+ ++F   LSAC  +
Sbjct: 441 RICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQS 500

Query: 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA 423
           GL ++G   F SM   Y ++ ++EHYACMV LL RAG LEQA   +  MP  P++ VW A
Sbjct: 501 GLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACVWGA 560

Query: 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483
           LLSSCR+H++V +  +AA ++F+L  ++ PG Y+ LSN  A+ G W+ V  +R+ MK +G
Sbjct: 561 LLSSCRVHNNVSLGEVAAEKLFELEPSN-PGNYILLSNIYASKGMWNEVNRVRDMMKNKG 619

Query: 484 VLKDTGCSWV 493
           + K+ GCSW+
Sbjct: 620 LRKNPGCSWI 629



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 118/483 (24%), Positives = 201/483 (41%), Gaps = 92/483 (19%)

Query: 45  ATSLPSALQHYI----NSDTPFYG--LKIHAHITKTGVKPNTNISIKLLILHLKCGALKY 98
           A +L  ++QH I    NS T       + HAHI KTG+  +T+++ KLL  +        
Sbjct: 7   ALALLDSVQHTIFNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFAD 66

Query: 99  AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
           A  + D +P+  + +++ +I  + K  Q   +LS   ++++ G  PD       +KA   
Sbjct: 67  ATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAG 126

Query: 159 CRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI 218
             +  P      R VH         +D  + ++LV  Y+K  +   A  VFD M E +V+
Sbjct: 127 LSALKP-----ARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVV 181

Query: 219 CSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSIS------------- 261
             +++++ +  QG V++A+ +F +     V+ +++ +N MI G++ S             
Sbjct: 182 SWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDM 241

Query: 262 ---------------------IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
                                +E     + +H  +IK     D  + SAL+DMY KC   
Sbjct: 242 HLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCT 301

Query: 301 DDARRVFDHMQ-----------------------------------QKNVFTWTSMIDGY 325
            +  +VFD M                                    + NV +WTSMI   
Sbjct: 302 SEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACC 361

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF-ESMERDYSMKP 384
            +NG   +ALELF  MQ   V+PN VT    L ACG+   +  G+     S+ R  S   
Sbjct: 362 SQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDV 421

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
            +   + ++D+  + G + QA +   +     N   W A+++   +H   +     A EI
Sbjct: 422 YVG--SALIDMYAKCGRI-QASRICFDGIPTKNLVCWNAVIAGYAMHGKAK----EAMEI 474

Query: 445 FKL 447
           F L
Sbjct: 475 FDL 477


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 142/437 (32%), Positives = 243/437 (55%), Gaps = 12/437 (2%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
            +G ++H+ I K G   N  +   L+ ++ KC  +  A ++FD++P+R L ++N MI G+
Sbjct: 262 LHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGF 321

Query: 122 LKNGQVEESLSLVRKLVSSGER-PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
             N   + ++ + + ++      P+  + S +L A   C +   L  N GR VH  ++K 
Sbjct: 322 FHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSA---CANMGGL--NFGRQVHGVVVKY 376

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
            +     +  +L+D Y K         +F  + +++V+    ++ GF+     E+A   F
Sbjct: 377 GLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYF 436

Query: 241 ----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
               R+ +  D   ++ ++   S S+    +   +H Q+IK  + +++ +  +L+ MYAK
Sbjct: 437 WVMRREGILPDEASFSTVLHS-SASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAK 495

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG + DA +VF+ ++  NV +WT+MI  Y  +G  NQ +ELF  M    ++P++VTF+  
Sbjct: 496 CGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCV 555

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           LSAC H G V++G   F SM++ + M P  EHYACMVDLLGRAG L++A +F+  MP KP
Sbjct: 556 LSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKP 615

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
              VW ALL +CR + +++M   AA  +F++   + PG YV L+N    +G+ +   E+R
Sbjct: 616 TPSVWGALLGACRKYGNLKMGREAAERLFEMEPYN-PGNYVLLANMCTRSGRLEEANEVR 674

Query: 477 EKMKLRGVLKDTGCSWV 493
             M + GV K+ GCSW+
Sbjct: 675 RLMGVNGVRKEPGCSWI 691



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 180/407 (44%), Gaps = 26/407 (6%)

Query: 52  LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLI-----LHLKCGALKYAGQMFDEL 106
           L H +N+      LK HA    T +  N   S+  L      L+ KCG L  A  +F   
Sbjct: 145 LNHLLNTAIQTRSLK-HATQIHTQIIINNYTSLPFLFNNLINLYAKCGCLNQALLLFSIT 203

Query: 107 PQ--RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP 164
               +T+  +  +I          ++LSL  ++  SG  P+ +TFS IL AS      + 
Sbjct: 204 HHHFKTIVTWTSLITHLSHFNMHLQALSLFNQMRCSGPYPNQFTFSSILSASAATMMVLH 263

Query: 165 LPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
                G+ +H+ I K    A+  + TALVD Y K      A  VFD M E+N++   SMI
Sbjct: 264 -----GQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMI 318

Query: 225 SGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVF 280
            GF      + A  +F+  + +  V+ N +     +S       L    +VH  ++K   
Sbjct: 319 VGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKYGL 378

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
                + ++L+DMY KC   D+  ++F  +  ++V TW  ++ G+ +N    +A   F +
Sbjct: 379 VPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWV 438

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           M+   + P+  +F   L +      + +G  I + + +   +K  M     ++ +  + G
Sbjct: 439 MRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVK-NMCILGSLITMYAKCG 497

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           SL  A + V E  E  N   W A++S+ +LH         AN++ +L
Sbjct: 498 SLVDAYQ-VFEGIEDHNVISWTAMISAYQLHG-------CANQVIEL 536



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 95/417 (22%), Positives = 170/417 (40%), Gaps = 64/417 (15%)

Query: 1   MP--NLSRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINS 58
           MP  NL    S +    HN  Y        F   L+    + N ++ +S+ SA     N 
Sbjct: 306 MPERNLVSWNSMIVGFFHNNLYDRAVG--VFKDVLREKTVIPNEVSVSSVLSACA---NM 360

Query: 59  DTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMI 118
               +G ++H  + K G+ P T +   L+ ++ KC       ++F  +  R +  +N ++
Sbjct: 361 GGLNFGRQVHGVVVKYGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLV 420

Query: 119 AGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
            G+++N + EE+ +    +   G  PD  +FS +L +S    +      + G  +H QI+
Sbjct: 421 MGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAA-----LHQGTAIHDQII 475

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
           K     +  +  +L+  Y K G    A  VF+ + + NVI  T+MIS +   G      E
Sbjct: 476 KLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIE 535

Query: 239 IFRKTVEKDI----VVYNAMIEGYSISIETAR-KALEVHCQLIKNVFFEDVKLG----SA 289
           +F   + + I    V +  ++   S    T R +    H   +K +   D+  G    + 
Sbjct: 536 LFEHMLSEGIEPSHVTFVCVLSACS---HTGRVEEGLAHFNSMKKI--HDMNPGPEHYAC 590

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349
           +VD+  + G +D+A+R  + M  K                                  P 
Sbjct: 591 MVDLLGRAGWLDEAKRFIESMPMK----------------------------------PT 616

Query: 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQA 405
              +   L AC   G +  GR   E+ ER + M+P    +Y  + ++  R+G LE+A
Sbjct: 617 PSVWGALLGACRKYGNLKMGR---EAAERLFEMEPYNPGNYVLLANMCTRSGRLEEA 670


>gi|255551961|ref|XP_002517025.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223543660|gb|EEF45188.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 640

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 157/487 (32%), Positives = 256/487 (52%), Gaps = 66/487 (13%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           YGL +     + G + +  +   ++ L ++CG +  A QMFDE+ +R   ++N MI GY 
Sbjct: 125 YGLAV-----RCGYEFDLVVKNVMIELFMRCGEMGSARQMFDEMEERDAVSWNSMITGYG 179

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTF-SMI---LKASTCCRSNVPLPR----------- 167
            NG+V+    + RKL    E  +  ++ SMI   +KA     + V   R           
Sbjct: 180 NNGRVD----IARKLFDRMEERNVISWTSMIQGYVKAGDLLEARVLFERMPEKDLASWKV 235

Query: 168 ------NLGRMVHAQILKCDVKADDV-LYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
                 ++G +V A+ L   +   DV  +  ++    K G+   A+  FD M E+NV   
Sbjct: 236 MVSAYMSVGNLVAARNLFELMPIHDVGTWNLMISGCCKAGEMDAAKEFFDRMQERNVASW 295

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS--------------------- 259
             +I G++  G V+ A  +F +  EK++V ++ MI GY+                     
Sbjct: 296 VMIIDGYIKVGDVDAARSVFDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLYKTFKEQGIK 355

Query: 260 ------ISIETARKAL-------EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRV 306
                 + I +A   L        V C  +    F ++++ ++L+DMYAKCG I+ A +V
Sbjct: 356 PDETFALGIISACSQLGVPDTAESVICDFVGPSLFPNLQVVTSLIDMYAKCGNIERAVQV 415

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           F+ + QK++  ++++I  +  +G    A+ LF  MQ+  ++P+ V FLG L+AC H GLV
Sbjct: 416 FEMVDQKDLHCYSTVITAFANHGLSEDAISLFSEMQKANIKPDGVAFLGVLTACNHGGLV 475

Query: 367 DKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
            +GR +F  M  +Y ++P  +HYACMVD+LGRAG LE+A   +  MP  PN+ VW ALLS
Sbjct: 476 GEGRRLFRQMIDEYGIQPSEKHYACMVDILGRAGCLEEAHSLICSMPVAPNATVWGALLS 535

Query: 427 SCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLK 486
           +CR+H +V++A  AA E+F++  N+  G YV L N  A AG+WD  +++R  ++   V K
Sbjct: 536 ACRVHLNVQLAEAAATELFQIEPNN-SGNYVLLFNIYADAGQWDDFSKVRAMIRENRVRK 594

Query: 487 DTGCSWV 493
           + G SW+
Sbjct: 595 NRGSSWI 601



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 120/480 (25%), Positives = 226/480 (47%), Gaps = 84/480 (17%)

Query: 67  IHAHITKTGVKPNTNISI-KLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           IHAH+  +G   ++++++ KLL L+ K GA+ YA ++FDE P+     +  +I G+ +N 
Sbjct: 22  IHAHLLISGSIASSDLTLNKLLRLYSKFGAVSYAHKLFDETPEPNSFLWTALIHGFTENN 81

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR-----MVHAQILKC 180
           Q E + +   K+      P  +T + +LKA +           LGR     +V+   ++C
Sbjct: 82  QYENAFAFFIKMHRENIVPLNFTIASVLKAVS----------RLGRIKDGDLVYGLAVRC 131

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
             + D V+   +++ +++ G+   AR +FD M E++ +   SMI+G+ + G V+ A ++F
Sbjct: 132 GYEFDLVVKNVMIELFMRCGEMGSARQMFDEMEERDAVSWNSMITGYGNNGRVDIARKLF 191

Query: 241 RKTVEKDIVVYNAMIEGY--SISIETARKALEV--------------------HCQLIKN 278
            +  E++++ + +MI+GY  +  +  AR   E                     +    +N
Sbjct: 192 DRMEERNVISWTSMIQGYVKAGDLLEARVLFERMPEKDLASWKVMVSAYMSVGNLVAARN 251

Query: 279 VF----FEDVKLGSALVDMYAKCGKIDDA------------------------------- 303
           +F      DV   + ++    K G++D A                               
Sbjct: 252 LFELMPIHDVGTWNLMISGCCKAGEMDAAKEFFDRMQERNVASWVMIIDGYIKVGDVDAA 311

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
           R VFD M +KN+  W++MI GY K G+P  +L+L+   +E  ++P+    LG +SAC   
Sbjct: 312 RSVFDQMPEKNLVAWSTMIGGYAKTGHPYSSLKLYKTFKEQGIKPDETFALGIISACSQL 371

Query: 364 GLVDKGREIFESMERDY---SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
           G+ D      ES+  D+   S+ P ++    ++D+  + G++E+A++ V EM ++ +   
Sbjct: 372 GVPDTA----ESVICDFVGPSLFPNLQVVTSLIDMYAKCGNIERAVQ-VFEMVDQKDLHC 426

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           ++ ++++   H   E A    +E+ K  AN +P   VA    L A      V E R   +
Sbjct: 427 YSTVITAFANHGLSEDAISLFSEMQK--ANIKPDG-VAFLGVLTACNHGGLVGEGRRLFR 483



 Score = 95.9 bits (237), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 84/335 (25%), Positives = 151/335 (45%), Gaps = 25/335 (7%)

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHAQIL-KCDVKADDVLYTALVDSYVKGGKTSYARIV 208
           S+I K    CRS   L       +HA +L    + + D+    L+  Y K G  SYA  +
Sbjct: 4   SLISKLLKQCRSLKTLTT-----IHAHLLISGSIASSDLTLNKLLRLYSKFGAVSYAHKL 58

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKA 268
           FD   E N    T++I GF      E+A   F K   ++IV  N  I     ++    + 
Sbjct: 59  FDETPEPNSFLWTALIHGFTENNQYENAFAFFIKMHRENIVPLNFTIASVLKAVSRLGRI 118

Query: 269 LE---VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
            +   V+   ++  +  D+ + + +++++ +CG++  AR++FD M++++  +W SMI GY
Sbjct: 119 KDGDLVYGLAVRCGYEFDLVVKNVMIELFMRCGEMGSARQMFDEMEERDAVSWNSMITGY 178

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM-ERDYSMKP 384
           G NG  + A +LF  M+E     N +++   +     AG + + R +FE M E+D     
Sbjct: 179 GNNGRVDIARKLFDRMEE----RNVISWTSMIQGYVKAGDLLEARVLFERMPEKD----- 229

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
            +  +  MV      G+L  A      MP   +   W  ++S C    +++    AA E 
Sbjct: 230 -LASWKVMVSAYMSVGNLVAARNLFELMPIH-DVGTWNLMISGCCKAGEMD----AAKEF 283

Query: 445 FKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           F         ++V + +     G  D+   + ++M
Sbjct: 284 FDRMQERNVASWVMIIDGYIKVGDVDAARSVFDQM 318


>gi|359486044|ref|XP_002269662.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g49142-like [Vitis vinifera]
          Length = 689

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 156/475 (32%), Positives = 243/475 (51%), Gaps = 55/475 (11%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G + HA I   G++PN  ++ K++ ++   G L  A  +FD +   +   YN +I  Y +
Sbjct: 96  GQQAHAQIVLHGLQPNAFLAAKMVAMYASSGDLDSAVVVFDRIDNPSSLLYNSIIRAYTR 155

Query: 124 NGQVEES---LSLVRKLVSSGERPDGYTFSMILKA----STCCRSNVPLPRNLGRMVHAQ 176
           +G        L    ++   G   D +T   +LK+    S  C         +GR VH Q
Sbjct: 156 HGXXXXXXXXLEAYARMHFLGLLGDNFTLPFVLKSCADLSRVC---------MGRCVHGQ 206

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
            L+  ++ D  +  +L+D YVK G    AR +FD M+ +++    ++I+G+M +G +  A
Sbjct: 207 GLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKMIVRDMASWNALIAGYMKEGEIGVA 266

Query: 237 EEIFRKTVEKDIVVYNAMIEGYS--------------------------ISIETARKALE 270
           E++F +   ++IV + AMI GY+                          ++I +   A  
Sbjct: 267 EDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFDEMLQDGSEMKPNWVTIVSVLPACA 326

Query: 271 VHCQLIKNVFFEDVKLG----------SALVDMYAKCGKIDDARRVFDHMQQ--KNVFTW 318
               L +     D   G          +AL  MYAKC  + +AR  FD + Q  KN+  W
Sbjct: 327 QSAALERGRRIHDFANGIGLHLNSSVQTALAGMYAKCYSLVEARCCFDMIAQNGKNLIAW 386

Query: 319 TSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER 378
            +MI  Y  +G   +A+ +F  M    VQP+ VTF+G LS C H+GL+D G   F  M  
Sbjct: 387 NTMITAYASHGCGVEAVSIFENMLRAGVQPDAVTFMGLLSGCSHSGLIDAGLNHFNDMGT 446

Query: 379 DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMAN 438
            +S++P++EHYAC+VDLLGRAG L +A + + +MP +    VW ALL++CR H ++E+A 
Sbjct: 447 IHSVEPRVEHYACVVDLLGRAGRLVEAKELISQMPMQAGPSVWGALLAACRSHRNLEIAE 506

Query: 439 IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           +AA  +F L   D  G YV LSN  A AG W+ V +LR  +K +G+ K  GCSW+
Sbjct: 507 LAARRLFVLEP-DNSGNYVLLSNLYAEAGMWEEVKKLRALLKYQGMKKSPGCSWI 560



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 74/328 (22%), Positives = 137/328 (41%), Gaps = 69/328 (21%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +LP  L+   +      G  +H    + G++ +  +   L+ +++KCG +  A ++FD++
Sbjct: 183 TLPFVLKSCADLSRVCMGRCVHGQGLRVGLEGDFYVGASLIDMYVKCGVIGDARKLFDKM 242

Query: 107 PQRTLSAYNYMIAGYLKNGQV-------------------------------EESLSLVR 135
             R ++++N +IAGY+K G++                               E++L L  
Sbjct: 243 IVRDMASWNALIAGYMKEGEIGVAEDLFERMEHRNIVSWTAMISGYTQNGFAEQALGLFD 302

Query: 136 KLVSSGE--RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALV 193
           +++  G   +P+  T   +L A   C  +  L R  GR +H       +  +  + TAL 
Sbjct: 303 EMLQDGSEMKPNWVTIVSVLPA---CAQSAALER--GRRIHDFANGIGLHLNSSVQTALA 357

Query: 194 DSYVKGGKTSYARIVFDMMLE--KNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKD 247
             Y K      AR  FDM+ +  KN+I   +MI+ + S G   +A  IF    R  V+ D
Sbjct: 358 GMYAKCYSLVEARCCFDMIAQNGKNLIAWNTMITAYASHGCGVEAVSIFENMLRAGVQPD 417

Query: 248 IVVYNAMIEGYSISIETARKALEVHCQLIKNVF--FED----------VKLGSALVDMYA 295
            V +  ++ G S            H  LI      F D          V+  + +VD+  
Sbjct: 418 AVTFMGLLSGCS------------HSGLIDAGLNHFNDMGTIHSVEPRVEHYACVVDLLG 465

Query: 296 KCGKIDDARRVFDHM-QQKNVFTWTSMI 322
           + G++ +A+ +   M  Q     W +++
Sbjct: 466 RAGRLVEAKELISQMPMQAGPSVWGALL 493


>gi|356526561|ref|XP_003531885.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 144/438 (32%), Positives = 245/438 (55%), Gaps = 11/438 (2%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           YGL +H  +  +G   +  ++ KL+ ++ + G++  A ++FDE  +RT+  +N +     
Sbjct: 96  YGLDVHRCLVDSGFDQDPFLATKLINMYYELGSIDRALKVFDETRERTIYVWNALFRALA 155

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
             G  +E L L  ++   G   D +T++ +LKA      +V  P   G+ +HA IL+   
Sbjct: 156 MVGHGKELLDLYIQMNWIGTPSDRFTYTYVLKACVVSELSV-CPLRKGKEIHAHILRHGY 214

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR- 241
           +A+  + T L+D Y K G  SYA  VF  M  KN +  ++MI+ F        A E+F+ 
Sbjct: 215 EANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQL 274

Query: 242 ------KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
                  +V   + + N M++  +  +    +   +H  +++      + + +AL+ MY 
Sbjct: 275 MMFEACNSVPNSVTMVN-MLQACA-GLAALEQGKLIHGYILRRQLDSILPVLNALITMYG 332

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           +CG++   +RVFD+M++++V +W S+I  YG +G   +A+++F  M    V P+Y++F+ 
Sbjct: 333 RCGEVLMGQRVFDNMKKRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGVSPSYISFIT 392

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            L AC HAGLV++G+ +FESM   Y + P MEHYACMVDLLGRA  L +A+K + +M  +
Sbjct: 393 VLGACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLGEAIKLIEDMHFE 452

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
           P   VW +LL SCR+H +VE+A  A+  +F+L   +  G YV L++  A A  W     +
Sbjct: 453 PGPTVWGSLLGSCRIHCNVELAERASTVLFELEPRN-AGNYVLLADIYAEAKLWSEAKSV 511

Query: 476 REKMKLRGVLKDTGCSWV 493
            + ++ RG+ K  GCSW+
Sbjct: 512 MKLLEARGLQKLPGCSWI 529


>gi|225468012|ref|XP_002270478.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 602

 Score =  257 bits (656), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 144/434 (33%), Positives = 245/434 (56%), Gaps = 9/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IHA I +TG + N  ++  L+ L+ KC A+  A ++FD + +    ++  +I+G+ K
Sbjct: 120 GVQIHARIIQTGFEDNLFLNSALVDLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSK 179

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG+ +E++   ++++ S  +P+  T+  ++ A T     +    +   ++HA ++K    
Sbjct: 180 NGRGKEAILFFKEMLGSQIKPNCVTYVSVISACT----GLETIFDQCALLHAHVVKLGFG 235

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               + + L+D Y K G+   A ++F   +E++ I   SMISG+    F E+A ++F + 
Sbjct: 236 VKTFVVSCLIDCYSKCGRIDQAVLLFGTTIERDNILFNSMISGYSQNLFGEEALKLFVEM 295

Query: 244 VEKDIVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
               +   +     I     S+   ++  +VH  + K     +V + SAL+DMY+KCG I
Sbjct: 296 RNNGLNPTDHTLTSILNACGSLTILQQGRQVHSLVAKMGSESNVFVVSALLDMYSKCGSI 355

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF-CMMQECCVQPNYVTFLGALSA 359
           D+AR VFD   +KN   WTSMI GY ++G   + L LF  ++ E    P+++ F   L+A
Sbjct: 356 DEARCVFDQAVEKNTVLWTSMITGYAQSGRGPEGLGLFERLVTEEGFTPDHICFTAVLTA 415

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C HAG +DKG + F  M RDY + P ++ YAC+VDL  R G L +A + +  +P +PNS 
Sbjct: 416 CNHAGFLDKGIDYFNQMRRDYGLVPDLDQYACLVDLYVRNGHLRKAKELMEAIPCEPNSV 475

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +W + LSSC+L+ + E+   AA+++FK+        YVA+++  A AG W  V E+R+ M
Sbjct: 476 MWGSFLSSCKLYGEAELGREAADKLFKMEPCS-TAPYVAMASIYAQAGLWSEVVEIRKLM 534

Query: 480 KLRGVLKDTGCSWV 493
           K +G+ K  G SWV
Sbjct: 535 KQKGLRKSAGWSWV 548



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 156/308 (50%), Gaps = 11/308 (3%)

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           K+  V E+L    ++ +SG +P  +     L  ++C +    L   LG  +HA+I++   
Sbjct: 78  KHANVREALESFWRMNTSGTKPTKFILCTAL--NSCAK---LLNWGLGVQIHARIIQTGF 132

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EE 238
           + +  L +ALVD Y K      A+ VFD M + + +  TS+ISGF   G  ++A    +E
Sbjct: 133 EDNLFLNSALVDLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKNGRGKEAILFFKE 192

Query: 239 IFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
           +    ++ + V Y ++I   +       +   +H  ++K  F     + S L+D Y+KCG
Sbjct: 193 MLGSQIKPNCVTYVSVISACTGLETIFDQCALLHAHVVKLGFGVKTFVVSCLIDCYSKCG 252

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           +ID A  +F    +++   + SMI GY +N    +AL+LF  M+   + P   T    L+
Sbjct: 253 RIDQAVLLFGTTIERDNILFNSMISGYSQNLFGEEALKLFVEMRNNGLNPTDHTLTSILN 312

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           ACG   ++ +GR++  S+      +  +   + ++D+  + GS+++A + V +   + N+
Sbjct: 313 ACGSLTILQQGRQV-HSLVAKMGSESNVFVVSALLDMYSKCGSIDEA-RCVFDQAVEKNT 370

Query: 419 DVWAALLS 426
            +W ++++
Sbjct: 371 VLWTSMIT 378


>gi|115463499|ref|NP_001055349.1| Os05g0370000 [Oryza sativa Japonica Group]
 gi|54287484|gb|AAV31228.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578900|dbj|BAF17263.1| Os05g0370000 [Oryza sativa Japonica Group]
          Length = 664

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 151/487 (31%), Positives = 239/487 (49%), Gaps = 69/487 (14%)

Query: 75  GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV 134
           GV  +  ++  LL  +L+ GA   A  + D +P RT+  ++ +IA +  +G  E +  L+
Sbjct: 50  GVSRDAFVASSLLHAYLRFGATADARSVLDGMPHRTVVGWSALIAAHASHGDAEGAWGLL 109

Query: 135 RKLVSSGERPDGYTFSMILKA----------------------------STCCRSNVPLP 166
            ++ S G  P+  T++ ++                               +C  S V   
Sbjct: 110 ERMRSDGVEPNVITWNGLVSGLNRSGRARDAVLALVRMHGEGFLPDATGVSCALSAVGDV 169

Query: 167 RNL--GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
            ++  G  +H  ++K   + D  + TAL+D Y K G+      VFD     +V    +++
Sbjct: 170 GDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFDESSHMDVASCNALV 229

Query: 225 SGFMSQGFVEDAEEIFR----KTVEKDIVVYNAM------------------------IE 256
           +G      V +A  +FR    + +E ++V + ++                        IE
Sbjct: 230 AGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIVACCVQNGRDLEAVDLFREMQSEGIE 289

Query: 257 GYSISIETARKAL----------EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRV 306
             S++I     A             HC  ++  F  D+ +GSALVDMYAKCG++ DAR +
Sbjct: 290 PNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSALVDMYAKCGRVRDARMI 349

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           F+ M  +NV +W +MI GY  +G    A+ LF  MQ    +P+ VTF   L AC  AG  
Sbjct: 350 FEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPDLVTFTCVLGACSQAGWT 409

Query: 367 DKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           ++GR  F  M+  + + P+MEHYACMV LLGRAG L+ A   + +MP +P+  +W +LL 
Sbjct: 410 EEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDIINQMPFEPDGCIWGSLLG 469

Query: 427 SCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLK 486
           SCR+H +V +A +AA  +F+L   +  G YV LSN  A+   WD V  LR+ MK  G+ K
Sbjct: 470 SCRVHGNVVLAEVAAENLFQLEPEN-AGNYVLLSNIYASKKMWDGVNRLRDMMKTVGLKK 528

Query: 487 DTGCSWV 493
           + GCSW+
Sbjct: 529 EKGCSWI 535



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 142/324 (43%), Gaps = 41/324 (12%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           AT +  AL    +      G ++H ++ K G + +  ++  L+ ++ KCG      ++FD
Sbjct: 156 ATGVSCALSAVGDVGDVAVGEQLHGYVVKAGCRLDACVATALIDMYGKCGRADEIVRVFD 215

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN-- 162
           E     +++ N ++AG  +N QV E+L L R+ V  G   +  +++ I+    CC  N  
Sbjct: 216 ESSHMDVASCNALVAGLSRNAQVSEALRLFREFVGRGIELNVVSWTSIV---ACCVQNGR 272

Query: 163 ----VPLPRNL---------------------------GRMVHAQILKCDVKADDVLYTA 191
               V L R +                           GR  H   L+     D  + +A
Sbjct: 273 DLEAVDLFREMQSEGIEPNSVTIPCVLPAFANIAALMHGRSAHCFSLRKGFHHDIYVGSA 332

Query: 192 LVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR---KTVEK-D 247
           LVD Y K G+   AR++F+ M  +NV+   +MI G+   G  E+A  +FR    + EK D
Sbjct: 333 LVDMYAKCGRVRDARMIFEAMPYRNVVSWNAMIGGYAMHGEAENAVRLFRSMQSSKEKPD 392

Query: 248 IVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVF 307
           +V +  ++   S +  T       +    K+     ++  + +V +  + GK+DDA  + 
Sbjct: 393 LVTFTCVLGACSQAGWTEEGRSYFNEMQHKHGISPRMEHYACMVTLLGRAGKLDDAYDII 452

Query: 308 DHMQ-QKNVFTWTSMIDGYGKNGN 330
           + M  + +   W S++     +GN
Sbjct: 453 NQMPFEPDGCIWGSLLGSCRVHGN 476


>gi|225466196|ref|XP_002265420.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 537

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 156/441 (35%), Positives = 240/441 (54%), Gaps = 42/441 (9%)

Query: 94  GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
           G + +A  +F  LP+RT   +N M+  +    +    LSL + ++S+G  P+ YTFS +L
Sbjct: 61  GDISHAYLLFLSLPRRTSFIWNTMLRAFTDKKEPATVLSLYKYMLSTGFLPNNYTFSFLL 120

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
           +A   C     L  + G ++HAQ ++   +A D +   L+  Y        AR +FD  +
Sbjct: 121 QA---CAQLSDL--SFGILLHAQAVRLGWEAYDFVQNGLLHLYASCNCMDSARRLFDGSV 175

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE--- 270
            ++V+  T++I+G+   G V  A ++F +  EK+ V ++AMI GY+  I   R+ALE   
Sbjct: 176 NRDVVTWTAVINGYAKSGQVVVARQLFDEMPEKNAVSWSAMITGYA-QIGLFREALELFN 234

Query: 271 --------------------------------VHCQLIKNVFFEDVKLGSALVDMYAKCG 298
                                           +H  + +N    D  LG+AL+DMYAKCG
Sbjct: 235 DMQIAGFRPNHGAIVGALTACAFLGALDQGRWIHAYVDRNRMVLDRILGTALIDMYAKCG 294

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            ++ A RVFD M  ++VF +TS+I G   +G+   A+E+F  MQ   V PN VTF+  LS
Sbjct: 295 CVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLS 354

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC   GLV++G  IF+SM   Y ++P ++HY C+VDLLGRAG LE A + V EMP +P+S
Sbjct: 355 ACSRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREMPLEPDS 414

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            V  ALL++CR+H DVE+      E     + D  G +V LSN  A+A +W+ V ++R+ 
Sbjct: 415 YVLGALLNACRVHGDVELGKETV-ECLAERSLDHGGVHVLLSNMYASANQWEDVAKVRKG 473

Query: 479 MKLRGVLKDTGCSWVGTESGL 499
           M+ + V K  GCS +  +  +
Sbjct: 474 MEEKKVKKVPGCSLIEVDGAV 494



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 67/225 (29%), Positives = 114/225 (50%), Gaps = 13/225 (5%)

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           K G +  A Q+FDE+P++   +++ MI GY + G   E+L L   +  +G RP+      
Sbjct: 191 KSGQVVVARQLFDEMPEKNAVSWSAMITGYAQIGLFREALELFNDMQIAGFRPN---HGA 247

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           I+ A T C     L +  GR +HA + +  +  D +L TAL+D Y K G    A  VFD 
Sbjct: 248 IVGALTACAFLGALDQ--GRWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDE 305

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARK 267
           ML+++V   TS+ISG  + G    A E+F +   + +    V +  ++   S  +    +
Sbjct: 306 MLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLSACS-RVGLVEE 364

Query: 268 ALEVHCQLIKNVFFED--VKLGSALVDMYAKCGKIDDARRVFDHM 310
            L +  + + N++  +  V+    LVD+  + G ++DA+RV   M
Sbjct: 365 GLRIF-KSMTNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREM 408



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 95/215 (44%), Gaps = 14/215 (6%)

Query: 35  NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           N+ ++   LTA +   AL           G  IHA++ +  +  +  +   L+ ++ KCG
Sbjct: 244 NHGAIVGALTACAFLGALDQ---------GRWIHAYVDRNRMVLDRILGTALIDMYAKCG 294

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
            ++ A ++FDE+  R + A+  +I+G   +G    ++ +  ++ + G  P+  TF  +L 
Sbjct: 295 CVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLS 354

Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA-RIVFDMML 213
           A     S V L     R+  +      ++     Y  LVD   + G    A R+V +M L
Sbjct: 355 AC----SRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREMPL 410

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI 248
           E +     ++++     G VE  +E      E+ +
Sbjct: 411 EPDSYVLGALLNACRVHGDVELGKETVECLAERSL 445


>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
          Length = 778

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 147/465 (31%), Positives = 259/465 (55%), Gaps = 16/465 (3%)

Query: 33  LQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLK 92
           +  +D     +T +SL  AL   ++      G ++H +  +  V+ +  I+  L+ ++ K
Sbjct: 312 MSEHDVTPGSVTLSSLLPAL---VDLGYFHLGKELHGYSIRRAVESDIFIANTLMDMYAK 368

Query: 93  CGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
            G  + A  +F+ +  R + ++N MIA   +NG   E+  LV ++  +GE P+ +T   +
Sbjct: 369 FGCSEKASAIFENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNL 428

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L A  C R        +G+ +HA  ++  + +D  +  AL+D Y K G+ + AR +FD  
Sbjct: 429 LPA--CSRVA---SVKMGKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDRS 483

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKA 268
            EK+ +   ++I G+       ++  +F++     +E D V +   +   S ++   ++ 
Sbjct: 484 -EKDGVSYNTLIVGYSQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACS-NLSAFKQG 541

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
            E+H  L+K +      L ++L+D+Y K G +D A ++F+ + QK+V +W +MI GYG +
Sbjct: 542 KEIHGVLVKRLLDSHPFLANSLLDVYTKGGMLDTASKIFNRITQKDVASWNTMILGYGMH 601

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G  + A ELF +M++  ++ ++V+++  LS C H GLVD+G++ F  M    ++KP+  H
Sbjct: 602 GQIDVAFELFDLMKDDGIEYDHVSYIAVLSVCSHGGLVDRGKKYFSQMIAQ-NIKPQQMH 660

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
           YACMVDLLGRAG L ++ + +  MP + NSDVW ALL SCR+H D+E+A +AA  +F+L 
Sbjct: 661 YACMVDLLGRAGQLSESAEIIRNMPFRANSDVWGALLGSCRIHGDIELARLAAEHLFELK 720

Query: 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             +  G Y  L N  + +G W+    +++ MK R V K+   SWV
Sbjct: 721 P-ENSGYYTLLRNMYSESGMWNEANGVKKLMKSRKVQKNPAYSWV 764



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 170/363 (46%), Gaps = 15/363 (4%)

Query: 59  DTPFYGLKIHAHITKTGVK-PNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYM 117
           + P  G ++HA   + G+   +      L+  +  CG    A ++FDE+P R + ++N +
Sbjct: 132 EHPAKGAELHAAALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSL 191

Query: 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQI 177
           ++  L NG +E++   V  ++ SG   +  +   IL A    R         G  VH  +
Sbjct: 192 VSALLTNGMLEDAKRAVVGMMRSGVPVNVASLVSILPACGTERD-----EGFGLCVHGLV 246

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
           LK  + +   L  ALVD Y K G    +  VF+ M EKN +   S I  F   GF ED  
Sbjct: 247 LKFGLNSVVNLGNALVDMYGKFGDLESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVL 306

Query: 238 EIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDM 293
           E+FR   E D+    V  ++++    + +       E+H   I+     D+ + + L+DM
Sbjct: 307 EMFRLMSEHDVTPGSVTLSSLLPAL-VDLGYFHLGKELHGYSIRRAVESDIFIANTLMDM 365

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           YAK G  + A  +F++++ +NV +W +MI    +NG   +A  L   MQ+    PN  T 
Sbjct: 366 YAKFGCSEKASAIFENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTL 425

Query: 354 LGALSACGHAGLVDKGREIFE-SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
           +  L AC     V  G++I   S+ R  S+   +     ++D+  + G L  A +++ + 
Sbjct: 426 VNLLPACSRVASVKMGKQIHAWSIRR--SLMSDLFVSNALIDVYAKCGQLNLA-RYIFDR 482

Query: 413 PEK 415
            EK
Sbjct: 483 SEK 485



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 100/346 (28%), Positives = 149/346 (43%), Gaps = 39/346 (11%)

Query: 129 ESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVL 188
           E+L +  ++V SG RPD  TF   L A+          +  G  +HA  L+  +   DV 
Sbjct: 98  EALRVYNRMVRSGVRPDDRTFPFALHAAAAVAQAEHPAK--GAELHAAALRRGLLLADVF 155

Query: 189 Y-TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKD 247
               LV  Y   G+ + AR VFD M  ++V+   S++S  ++ G +EDA+      +   
Sbjct: 156 AGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALLTNGMLEDAKRAVVGMMRSG 215

Query: 248 IVVYNAMIEGYSISIETARK---ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDAR 304
           + V  A +     +  T R     L VH  ++K      V LG+ALVDMY K G ++ + 
Sbjct: 216 VPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALVDMYGKFGDLESSM 275

Query: 305 RVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG 364
            VF+ MQ+KN  +W S I  +   G     LE+F +M E  V P  VT    L A    G
Sbjct: 276 HVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLPALVDLG 335

Query: 365 LVDKGRE-----IFESMERD-YSMKPKMEHYA------------------------CMVD 394
               G+E     I  ++E D +     M+ YA                         M+ 
Sbjct: 336 YFHLGKELHGYSIRRAVESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVVSWNAMIA 395

Query: 395 LLGRAGSLEQALKFVLEMP---EKPNSDVWAALLSSCRLHDDVEMA 437
            L + G+  +A + V+EM    E PNS     LL +C     V+M 
Sbjct: 396 NLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMG 441


>gi|15240665|ref|NP_199850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171167|sp|Q9FK33.1|PP427_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g50390, chloroplastic; Flags: Precursor
 gi|9758921|dbj|BAB09458.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008555|gb|AED95938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 701

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 139/434 (32%), Positives = 244/434 (56%), Gaps = 15/434 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +++  +   G +P   +  ++L++H+KCG +  A ++FDE+P+R L +Y  +I+G++  G
Sbjct: 144 RVYGFMMSNGFEPEQYMMNRILLMHVKCGMIIDARRLFDEIPERNLYSYYSIISGFVNFG 203

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              E+  L + +       + +TF+++L+AS    S       +G+ +H   LK  V  +
Sbjct: 204 NYVEAFELFKMMWEELSDCETHTFAVMLRASAGLGSIY-----VGKQLHVCALKLGVVDN 258

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEIFR 241
             +   L+D Y K G    AR  F+ M EK  +   ++I+G+   G+ E+A     ++  
Sbjct: 259 TFVSCGLIDMYSKCGDIEDARCAFECMPEKTTVAWNNVIAGYALHGYSEEALCLLYDMRD 318

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKAL--EVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
             V  D    + MI    IS + A+  L  + H  LI+N F  ++   +ALVD Y+K G+
Sbjct: 319 SGVSIDQFTLSIMIR---ISTKLAKLELTKQAHASLIRNGFESEIVANTALVDFYSKWGR 375

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +D AR VFD + +KN+ +W +++ GY  +G    A++LF  M    V PN+VTFL  LSA
Sbjct: 376 VDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVKLFEKMIAANVAPNHVTFLAVLSA 435

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C ++GL ++G EIF SM   + +KP+  HYACM++LLGR G L++A+ F+   P K   +
Sbjct: 436 CAYSGLSEQGWEIFLSMSEVHGIKPRAMHYACMIELLGRDGLLDEAIAFIRRAPLKTTVN 495

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +WAALL++CR+ +++E+  + A +++ +   ++ G YV + N   + GK      + E +
Sbjct: 496 MWAALLNACRMQENLELGRVVAEKLYGMGP-EKLGNYVVMYNMYNSMGKTAEAAGVLETL 554

Query: 480 KLRGVLKDTGCSWV 493
           + +G+     C+WV
Sbjct: 555 ESKGLSMMPACTWV 568



 Score =  104 bits (259), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 106/188 (56%), Gaps = 7/188 (3%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           + G ++H    K GV  NT +S  L+ ++ KCG ++ A   F+ +P++T  A+N +IAGY
Sbjct: 241 YVGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFECMPEKTTVAWNNVIAGY 300

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR-NLGRMVHAQILKC 180
             +G  EE+L L+  +  SG   D +T S++++ ST       L +  L +  HA +++ 
Sbjct: 301 ALHGYSEEALCLLYDMRDSGVSIDQFTLSIMIRIST------KLAKLELTKQAHASLIRN 354

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
             +++ V  TALVD Y K G+   AR VFD +  KN+I   +++ G+ + G   DA ++F
Sbjct: 355 GFESEIVANTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVKLF 414

Query: 241 RKTVEKDI 248
            K +  ++
Sbjct: 415 EKMIAANV 422



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 116/243 (47%), Gaps = 10/243 (4%)

Query: 201 KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-----RKTVEKDIVVYNAMI 255
           K S  +I+ D  + K+ +   S I   +      +A E+F     R + +  +  Y+A++
Sbjct: 71  KESKDQILDDTQISKSGVTICSQIEKLVLCNRFREAFELFEILEIRCSFKVGVSTYDALV 130

Query: 256 EGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
           E   I +++ R    V+  ++ N F  +  + + ++ M+ KCG I DARR+FD + ++N+
Sbjct: 131 EA-CIRLKSIRCVKRVYGFMMSNGFEPEQYMMNRILLMHVKCGMIIDARRLFDEIPERNL 189

Query: 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES 375
           +++ S+I G+   GN  +A ELF MM E        TF   L A    G +  G+++   
Sbjct: 190 YSYYSIISGFVNFGNYVEAFELFKMMWEELSDCETHTFAVMLRASAGLGSIYVGKQLHVC 249

Query: 376 MERDYSMKPKMEHYAC-MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDV 434
             +   +       +C ++D+  + G +E A      MPEK  +  W  +++   LH   
Sbjct: 250 ALKLGVVDNTF--VSCGLIDMYSKCGDIEDARCAFECMPEK-TTVAWNNVIAGYALHGYS 306

Query: 435 EMA 437
           E A
Sbjct: 307 EEA 309


>gi|22328607|ref|NP_193141.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635650|sp|O23266.3|PP308_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g14050, mitochondrial; Flags: Precursor
 gi|332657965|gb|AEE83365.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 612

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 157/463 (33%), Positives = 245/463 (52%), Gaps = 41/463 (8%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +HAHI K G+     ++  L+ ++ KCGA  +A Q+FDE+P R   A+  ++    +   
Sbjct: 25  LHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANL 84

Query: 127 VEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             ++LS+   + SS   RPD + FS ++KA     S      + GR VH   +  +   D
Sbjct: 85  SGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSI-----DHGRQVHCHFIVSEYAND 139

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
           +V+ ++LVD Y K G  + A+ VFD +  KN I  T+M+SG+   G  E+A E+FR    
Sbjct: 140 EVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPV 199

Query: 246 KDIVVYNAMIEGY----------SISIETARKAL-------------------------E 270
           K++  + A+I G+          S+  E  R+ +                         +
Sbjct: 200 KNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQ 259

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           VH  +I   F   V + +AL+DMYAKC  +  A+ +F  M+ ++V +WTS+I G  ++G 
Sbjct: 260 VHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQ 319

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
             +AL L+  M    V+PN VTF+G + AC H G V+KGRE+F+SM +DY ++P ++HY 
Sbjct: 320 AEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYT 379

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
           C++DLLGR+G L++A   +  MP  P+   WAALLS+C+     +M    A+ +      
Sbjct: 380 CLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKL 439

Query: 451 DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             P  Y+ LSN  A+A  W  V+E R K+    V KD G S V
Sbjct: 440 KDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSV 482



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 108/217 (49%), Gaps = 14/217 (6%)

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG--- 226
            + +HA I+K  +     L   LV+ Y K G  S+A  VFD M  ++ I   S+++    
Sbjct: 22  AKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQ 81

Query: 227 --FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFE 282
                +     +       +  D  V++A+++  +   SI+  R   +VHC  I + +  
Sbjct: 82  ANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGR---QVHCHFIVSEYAN 138

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           D  + S+LVDMYAKCG ++ A+ VFD ++ KN  +WT+M+ GY K+G   +ALELF ++ 
Sbjct: 139 DEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILP 198

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD 379
                 N  ++   +S    +G   +   +F  M R+
Sbjct: 199 ----VKNLYSWTALISGFVQSGKGLEAFSVFTEMRRE 231



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 139/353 (39%), Gaps = 67/353 (18%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G ++H H   +    +  +   L+ ++ KCG L  A  +FD +  +   ++  M++GY 
Sbjct: 123 HGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYA 182

Query: 123 KNGQVEESLSLVRKL---------------VSSGERPDGYT-FSMILKAST------CCR 160
           K+G+ EE+L L R L               V SG+  + ++ F+ + +            
Sbjct: 183 KSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLS 242

Query: 161 SNVPLPRNL-----GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
           S V    NL     GR VH  ++     +   +  AL+D Y K      A+ +F  M  +
Sbjct: 243 SIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHR 302

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQL 275
           +V+  TS+I G    G             EK + +Y+ M+                H   
Sbjct: 303 DVVSWTSLIVGMAQHG-----------QAEKALALYDDMVS---------------HGVK 336

Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-----NVFTWTSMIDGYGKNGN 330
              V F        L+   +  G ++  R +F  M +      ++  +T ++D  G++G 
Sbjct: 337 PNEVTF------VGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGL 390

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK 383
            ++A  L   M      P+  T+   LSAC   G    G  I + +   + +K
Sbjct: 391 LDEAENLIHTMP---FPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLK 440



 Score = 55.1 bits (131), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 15/221 (6%)

Query: 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMID 323
           T  KAL  H  ++K    +   L + LV++Y KCG    A +VFD M  ++   W S++ 
Sbjct: 20  TTAKAL--HAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLT 77

Query: 324 GYGKNGNPNQAL-ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF-ESMERDYS 381
              +     + L     +     ++P+   F   + AC + G +D GR++    +  +Y+
Sbjct: 78  ALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYA 137

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441
               ++  + +VD+  + G L  A K V +     N+  W A++S        E     A
Sbjct: 138 NDEVVK--SSLVDMYAKCGLLNSA-KAVFDSIRVKNTISWTAMVSGYAKSGRKE----EA 190

Query: 442 NEIFKLNANDRPGAYVALSNTLAAAGK----WDSVTELREK 478
            E+F++       ++ AL +    +GK    +   TE+R +
Sbjct: 191 LELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRE 231


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 152/481 (31%), Positives = 254/481 (52%), Gaps = 40/481 (8%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           ++P  L+        + G+ +HA   K G+  +  +   +L +++ CG +  A ++FD++
Sbjct: 136 TIPFVLKACAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDI 195

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
            +RTL ++N MI GY K G+ EE++ + R++   G  PD +T   +L  ST    N    
Sbjct: 196 SERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTK-HGNF--- 251

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
            +LGR VH  ++   ++ D ++  AL+D Y K G    A+ VFD ML+K+V+  T MI+ 
Sbjct: 252 -DLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINA 310

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMI-----EG-YSISIE--------------TAR 266
           + + G ++ A E F +   K++V +N++I     EG Y+ +++              T  
Sbjct: 311 YANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTL 370

Query: 267 KAL--------------EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ 312
            A+              + H  +  N       L +A++DMYAKCG +  A  VF  M +
Sbjct: 371 VAILSSCSHMGDLALGKQAHSYIFDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPE 430

Query: 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           KN  +W  +I     +G   +A+E+F  MQ   V P+ +TF G LSAC H+GLVD G+  
Sbjct: 431 KNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQHY 490

Query: 373 FESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHD 432
           FE M   + + P +EHYACMVDLLGR G L +A+  + +MP KP+  VW+ALL +CR + 
Sbjct: 491 FEIMNLTFGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALLGACRTYG 550

Query: 433 DVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSW 492
           ++ +      ++ +L   +  G YV LSN  + + +WD +  + + +   G+ K    S+
Sbjct: 551 NLAIGKQIMKQLLELGRYN-SGLYVLLSNMYSESQRWDDMKNIWKILDQNGIKKCRAISF 609

Query: 493 V 493
           +
Sbjct: 610 I 610



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 116/402 (28%), Positives = 190/402 (47%), Gaps = 47/402 (11%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +HA I   G+        KL+   ++   L+YA ++FD++PQ     +N++I GY  +  
Sbjct: 55  VHAQIILHGLATQVLTLGKLVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLIKGYSNSSD 114

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
             +SL L R++V  G  P+ +T   +LKA  C   +      LG  VHAQ  K  + +  
Sbjct: 115 PIKSLLLYRRMVCDGILPNQFTIPFVLKA--CAAKSCYW---LGVCVHAQSFKLGMGSHA 169

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT--- 243
            +  A+++ YV  G  + AR VFD + E+ ++   SMI+G+   G  E+A  +FR+    
Sbjct: 170 CVQNAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEV 229

Query: 244 -VEKDIVVYNAMIEGYSISIETARKALE--VHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
            +E D+     ++   S+S +     L   VH  ++      D  + +AL+DMYAKCG +
Sbjct: 230 GLEPDVFTLVGLL---SVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMYAKCGNL 286

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF----------------CMMQE- 343
             A+ VFD M  K+V +WT MI+ Y  +G  + ALE F                C +QE 
Sbjct: 287 KCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEG 346

Query: 344 -----------CC---VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
                       C   V  N  T +  LS+C H G +  G++   S   D ++       
Sbjct: 347 LYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQA-HSYIFDNNITLSATLC 405

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
             ++D+  + G+L+ A+     MPEK N+  W  ++ +  LH
Sbjct: 406 NAIIDMYAKCGALQTAMDVFFGMPEK-NAVSWNVIIGALALH 446


>gi|297802258|ref|XP_002869013.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314849|gb|EFH45272.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 693

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 144/464 (31%), Positives = 245/464 (52%), Gaps = 39/464 (8%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G K+H HI  +G  P   I  ++L ++ KCG+L  A ++FDE+P+R + ++N M+ GY +
Sbjct: 106 GKKVHEHIRTSGFVPGIVIWNRILGMYAKCGSLVDARKVFDEMPERDVCSWNVMVNGYAE 165

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKAST------------CCRSNVPLPR---- 167
            G +EE+    R L       D Y+++ ++                     VP  +    
Sbjct: 166 VGLLEEA----RNLFDEMPERDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNSKPNIF 221

Query: 168 ---------------NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
                            G+ +H  I++  + +D+VL+++L+D Y K G    AR +FD +
Sbjct: 222 TVSSAVAAAAAIKCIRRGKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEARNIFDKI 281

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTV---EKDIVVYNAMIEGYSISIETARKAL 269
           ++K+V+  TSMI  +       +   +F + +   E+      + +      + T     
Sbjct: 282 IDKDVVSWTSMIDRYFKSSRWREGFSLFSELIGSCERPNEYTFSGVLNACADLTTEELGR 341

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
           +VH  + +  F       S+L+DMY KCG I+ AR V D   + ++ + TS+I GY +NG
Sbjct: 342 QVHGYMTRVGFDPYSFASSSLIDMYTKCGNIESARHVVDGCPKPDLVSLTSLIGGYAQNG 401

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
            P++AL+ F ++ +   +P++VTF+  LSAC HAGLV+KG E F S+   + +    +HY
Sbjct: 402 KPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHDLTHTSDHY 461

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
            C+VDLL R+G  EQ    + EMP KP+  +WA++L  C  + ++++A  AA E+FK+  
Sbjct: 462 TCLVDLLARSGRFEQLKSVLSEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQELFKIEP 521

Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            + P  YV ++N  AAAGKW+   ++R++M+  G+ K  G SW 
Sbjct: 522 EN-PVTYVTMANIYAAAGKWEEEGKMRKRMQEIGITKKPGSSWT 564


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 156/440 (35%), Positives = 236/440 (53%), Gaps = 23/440 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+ I     K G      +   L+ L+ KCG +  A  +F  + +  L AYN MI+G+  
Sbjct: 228 GMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTA 287

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRM-----VHAQIL 178
           NG  E S+ L R+L+ SGER    T   +          +PL    G +     +H   +
Sbjct: 288 NGGTECSVKLFRELLFSGERVSSSTIVGL----------IPLHSPFGHLHLACSIHGFCV 337

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
           K  +  +  + TA    Y K  +   AR +FD   EK V+   +MISG+   G  E A  
Sbjct: 338 KSGIILNPTVSTAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAIS 397

Query: 239 IFRKTVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFE-DVKLGSALVDM 293
           +F++ ++ +    NA+     +S      +L     VH  LIK+   E ++ + +ALVDM
Sbjct: 398 LFKEMMKTEFTP-NAVTITTILSACAQLGSLSFGKWVH-HLIKSENLEPNIYVSTALVDM 455

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           YAKCG I +A ++FD M +KN  TW +MI GYG +G  ++AL+L+  M      P+ VTF
Sbjct: 456 YAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTF 515

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           L  L AC HAGLV +G EIF +M   Y ++P +EHYACMVD+LGR+G LE+AL+F+ +MP
Sbjct: 516 LSVLYACSHAGLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMP 575

Query: 414 EKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473
            +P   VW  LL +C +H D ++A +A+  +F+L+     G YV LSN  +    +    
Sbjct: 576 VEPGPAVWGTLLGACMIHKDTDIARLASERLFELDPGS-VGYYVLLSNIYSVERNFPKAA 634

Query: 474 ELREKMKLRGVLKDTGCSWV 493
            +R+ +K R + K  GC+ +
Sbjct: 635 SIRQVVKKRKLAKSPGCTLI 654



 Score =  156 bits (395), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 112/398 (28%), Positives = 191/398 (47%), Gaps = 14/398 (3%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +HAH    G   N  +   L+ L+ K   + YA ++FD +P+R    +N MI G +KN  
Sbjct: 130 LHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCC 189

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
            ++S+ L R++V+ G R D  T + +L A+   +        +G  +    LK      D
Sbjct: 190 FDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQE-----LKVGMGIQCLALKIGFGFCD 244

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
            + T L+  Y K G  + AR++F  +   ++I   +MISGF + G  E + ++FR+ +  
Sbjct: 245 YVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFS 304

Query: 247 DIVVYNAMIEGYSISIETARKALEVHCQL----IKNVFFEDVKLGSALVDMYAKCGKIDD 302
              V ++ I G  I + +    L + C +    +K+    +  + +A   +Y K  +ID 
Sbjct: 305 GERVSSSTIVGL-IPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDL 363

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           AR +FD   +K V  W +MI GY +NG+   A+ LF  M +    PN VT    LSAC  
Sbjct: 364 ARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQ 423

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
            G +  G+ +   ++ + +++P +     +VD+  + G++ +A +    M EK N+  W 
Sbjct: 424 LGSLSFGKWVHHLIKSE-NLEPNIYVSTALVDMYAKCGNISEAWQLFDSMSEK-NTVTWN 481

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
            ++    LH     A    NE+  L  N  P A   LS
Sbjct: 482 TMIFGYGLHGYGHEALKLYNEMLHLGYN--PSAVTFLS 517



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 105/470 (22%), Positives = 197/470 (41%), Gaps = 62/470 (13%)

Query: 56  INSDTPFYGL-KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAY 114
           IN  + F  L + HA     G + +     KL        A ++A  +F  +P+  +  +
Sbjct: 19  INKASTFPHLAQTHAQFILNGYRFDLATLTKLTQKLFDFSATRHARALFFSVPKPDIFLF 78

Query: 115 NYMIAGYLKNGQVEESLSLVRKLV-SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMV 173
           N ++ G+  N     S+SL   L  ++   PD +T++  + A   C ++  L      ++
Sbjct: 79  NVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNFTYAFAVAA---CSNDKHL-----MLL 130

Query: 174 HAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFV 233
           HA  +     ++  + +ALVD Y K  +  YAR VFD M E++ +   +MI+G +     
Sbjct: 131 HAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCF 190

Query: 234 EDAEEIFRKTVEKDIVVYNAMIEGY---SISIETARKALEVHCQLIKNVF-FEDVKLGSA 289
           +D+ ++FR+ V   + V ++ +      +  ++  +  + + C  +K  F F D  L + 
Sbjct: 191 DDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVL-TG 249

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF----------- 338
           L+ +Y+KCG ++ AR +F  + + ++  + +MI G+  NG    +++LF           
Sbjct: 250 LISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVS 309

Query: 339 --------------------CMMQECCVQPNYV---TFLGALSAC-GHAGLVDKGREIFE 374
                               C +   CV+   +   T   A +A       +D  R +F 
Sbjct: 310 SSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPTVSTAFTAIYNKLNEIDLARHLF- 368

Query: 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSCRLH 431
               D S +  +  +  M+    + GS E A+    EM +    PN+     +LS+C   
Sbjct: 369 ----DESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQL 424

Query: 432 DDVEMANIAANEIFKLNANDRPGAYV--ALSNTLAAAGKWDSVTELREKM 479
             +       + I   + N  P  YV  AL +  A  G      +L + M
Sbjct: 425 GSLSFGKWVHHLI--KSENLEPNIYVSTALVDMYAKCGNISEAWQLFDSM 472



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 3/115 (2%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           N +T T++ SA        +  +G  +H  I    ++PN  +S  L+ ++ KCG +  A 
Sbjct: 410 NAVTITTILSACAQL---GSLSFGKWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEAW 466

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           Q+FD + ++    +N MI GY  +G   E+L L  +++  G  P   TF  +L A
Sbjct: 467 QLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYA 521


>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
 gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  256 bits (655), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 149/438 (34%), Positives = 229/438 (52%), Gaps = 18/438 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G   H  +   G   N  IS  L+ ++ +  A+  A  +F ELPQ     +  +I+ + +
Sbjct: 181 GKCFHGVVMVRGFDLNDVISTALIDMYGRNSAVDDAILVFVELPQPDAICWTSIISAFTR 240

Query: 124 NGQVEESLSLVRKLVSS-GERPDGYTFSMILKASTCCRSNVPLPRNLGRM-----VHAQI 177
           N   +++L     +    G  PDG+TF  +L A            NLGR+     VHA++
Sbjct: 241 NDVYDKALGFFYSMCRKHGLSPDGFTFGTVLTACG----------NLGRLKQGKEVHAKV 290

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
           +   +  +  + ++LVD Y K    + ++ VFD M  KN++  T+++ G+   G  E   
Sbjct: 291 ITSGLSGNVFVESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQNGDFESVI 350

Query: 238 EIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
            IFR+  + D   +  ++   +  +   R+  EVHCQ +K   + DV   SALVD+YAKC
Sbjct: 351 RIFREGKKVDTYSFGTVLRACA-GLAAVRQGKEVHCQYVKRCCWRDVVTESALVDLYAKC 409

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G ID A R+F  M  +N+ TW SMI G+ +NG   +  +LF  M E  ++P+Y++F+G L
Sbjct: 410 GCIDFAYRIFVRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGIRPDYISFVGVL 469

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            AC HAGLVD+G++ F +M   Y +KP +EHY CM+DLLGRAG LE+A   +     +  
Sbjct: 470 FACSHAGLVDQGKKYFAAMTEVYEIKPGIEHYNCMIDLLGRAGLLEEAENLIENANCRDE 529

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
             +W  LL +C        A   A +  +L   D   +YV L+N   A G+WD   ++R 
Sbjct: 530 PSLWTVLLGACAASPHSATAERIAKKAVELKP-DHHLSYVYLANVYRAVGRWDDAVKIRN 588

Query: 478 KMKLRGVLKDTGCSWVGT 495
            M  RGV K  G SW+ T
Sbjct: 589 LMTKRGVGKMPGTSWIET 606



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/397 (26%), Positives = 195/397 (49%), Gaps = 20/397 (5%)

Query: 35  NYDSLSN-PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKC 93
           ++  LSN P    SL   LQ    + +  +G++ H+H  K+G+  +  +   LL L+ K 
Sbjct: 52  DWTRLSNKPFFYASL---LQTCTKAVSFTHGIQFHSHAIKSGLDTDRFVGNSLLALYFKL 108

Query: 94  GA-LKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
           G  L  A ++FD L  + L ++  MI GY+K  + ++SL L  +++  G  P+G+T S +
Sbjct: 109 GPNLFEARRVFDGLFYKDLISWTSMITGYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAV 168

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           +KA   C     L   LG+  H  ++      +DV+ TAL+D Y +      A +VF  +
Sbjct: 169 IKA---CSGLGDL--RLGKCFHGVVMVRGFDLNDVISTALIDMYGRNSAVDDAILVFVEL 223

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS----IETARKA 268
            + + IC TS+IS F      + A   F     K  +  +    G  ++    +   ++ 
Sbjct: 224 PQPDAICWTSIISAFTRNDVYDKALGFFYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQG 283

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
            EVH ++I +    +V + S+LVDMY KC  ++ ++ VFD M  KN+ +WT+++ GY +N
Sbjct: 284 KEVHAKVITSGLSGNVFVESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQN 343

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G+    + +F   +    + +  +F   L AC     V +G+E+     +    +  +  
Sbjct: 344 GDFESVIRIFREGK----KVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWRDVVTE 399

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
            A +VDL  + G ++ A +  + M  + N   W +++
Sbjct: 400 SA-LVDLYAKCGCIDFAYRIFVRMSVR-NLITWNSMI 434



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 98/184 (53%), Gaps = 13/184 (7%)

Query: 258 YSISIETARKA------LEVHCQLIKNVFFEDVKLGSALVDMYAKCG-KIDDARRVFDHM 310
           Y+  ++T  KA      ++ H   IK+    D  +G++L+ +Y K G  + +ARRVFD +
Sbjct: 63  YASLLQTCTKAVSFTHGIQFHSHAIKSGLDTDRFVGNSLLALYFKLGPNLFEARRVFDGL 122

Query: 311 QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR 370
             K++ +WTSMI GY K   P ++LELF  M    ++PN  T    + AC   G +  G+
Sbjct: 123 FYKDLISWTSMITGYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACSGLGDLRLGK 182

Query: 371 EIFES--MERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
             F    M R + +   +     ++D+ GR  +++ A+   +E+P+ P++  W +++S+ 
Sbjct: 183 -CFHGVVMVRGFDLNDVIS--TALIDMYGRNSAVDDAILVFVELPQ-PDAICWTSIISAF 238

Query: 429 RLHD 432
             +D
Sbjct: 239 TRND 242


>gi|357466605|ref|XP_003603587.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492635|gb|AES73838.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 568

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 154/463 (33%), Positives = 241/463 (52%), Gaps = 43/463 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           KIHAH+ K  +  +  +  K+L      G + YA  +F +L    +  YN +I  Y  N 
Sbjct: 28  KIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLLHPNIFTYNAIIRTYAHNR 87

Query: 126 QVEESLSLVRKLVSSGER---PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
               ++S+  ++++       PD +TF  ++K+ T       L   LG  VH  + K   
Sbjct: 88  HHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCTGI-----LCHRLGMQVHGLVYKFGA 142

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
               +   AL+D Y K G  + A  VF+ M  ++VI   S+I G++  G +  A E+F  
Sbjct: 143 DFHCITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDD 202

Query: 243 TVEKDIVVYNAMIEGYS-----------------ISIE-------------TARKALEV- 271
              + IV +  MI GY                  + IE                 ALEV 
Sbjct: 203 MPVRTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVG 262

Query: 272 ---HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
              H    KN F     + +AL++MYAKCG ID+A  +FD + +K+V +W++MI G   +
Sbjct: 263 KWIHMYADKNGFLRKTGICNALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANH 322

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G   +A++LF  M +  V PN +TFLG L AC H GL D+G + F+ M   Y ++P++EH
Sbjct: 323 GKGYEAIQLFEEMCKVRVAPNEITFLGVLLACSHTGLWDEGLKYFDVMSASYHIEPEIEH 382

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
           Y C++DLLGR+G L QAL  + +MP KP+S +W +LLSSCR+H ++++A IA  ++ +L 
Sbjct: 383 YGCLIDLLGRSGCLGQALDTISKMPIKPDSRIWNSLLSSCRIHRNLQIAVIAVKQLMELE 442

Query: 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
             +  G YV L+N  A  GKW+ V+ +R+ ++ + + K  G S
Sbjct: 443 P-EESGNYVLLANMYAEHGKWEDVSNIRKLIRNKRIKKTPGSS 484



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/350 (22%), Positives = 154/350 (44%), Gaps = 65/350 (18%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           + +HA ++K  +   + L T ++DS    G  SYA ++F  +L  N+    ++I  +   
Sbjct: 27  KKIHAHVVKLSLSQSNFLVTKMLDSCDNLGHVSYATLLFKQLLHPNIFTYNAIIRTYAHN 86

Query: 231 GFVEDAEEIFRK-------TVEKDIVVYNAMIEGYSISIETARKALEVH----------- 272
                A  +F +       +V  D   +  +I+  +  I   R  ++VH           
Sbjct: 87  RHHSSAISVFVQMLTHSTNSVFPDKFTFPFVIKSCT-GILCHRLGMQVHGLVYKFGADFH 145

Query: 273 --------------------CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ 312
                               C++ + +   DV   ++L+  Y K G+++ AR +FD M  
Sbjct: 146 CITENALIDMYTKFGDLTNACKVFEEMSHRDVISWNSLIFGYVKLGQMNSARELFDDMPV 205

Query: 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           + + +WT+MI GYG+ G    AL++F  MQ   ++P+ ++ +  L AC   G ++ G+ I
Sbjct: 206 RTIVSWTTMITGYGRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKWI 265

Query: 373 FESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV--WAALL----- 425
               +++  ++ K      ++++  + G +++A     ++ EK   DV  W+ ++     
Sbjct: 266 HMYADKNGFLR-KTGICNALIEMYAKCGCIDEAWNLFDQLVEK---DVISWSTMIGGLAN 321

Query: 426 -----SSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
                 + +L +++    +A NEI  L      G  +A S+T    G WD
Sbjct: 322 HGKGYEAIQLFEEMCKVRVAPNEITFL------GVLLACSHT----GLWD 361



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 86/394 (21%), Positives = 161/394 (40%), Gaps = 77/394 (19%)

Query: 2   PNLSRIRSSVFSSTHNRHYTLV----------PPNQTFPPKLQNYDSLSNPLTATSLPSA 51
           PN+    + + +  HNRH++              N  FP      D  + P    S    
Sbjct: 71  PNIFTYNAIIRTYAHNRHHSSAISVFVQMLTHSTNSVFP------DKFTFPFVIKSCTGI 124

Query: 52  LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL 111
           L H +       G+++H  + K G   +      L+ ++ K G L  A ++F+E+  R +
Sbjct: 125 LCHRL-------GMQVHGLVYKFGADFHCITENALIDMYTKFGDLTNACKVFEEMSHRDV 177

Query: 112 SAYNYMIAGYLKNGQVEESLSL-----VRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
            ++N +I GY+K GQ+  +  L     VR +VS      GY                   
Sbjct: 178 ISWNSLIFGYVKLGQMNSARELFDDMPVRTIVSWTTMITGY------------------- 218

Query: 167 RNLGRM--------VHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVF-----DMML 213
              GRM        V  ++    ++ D++   A++ +  + G     + +      +  L
Sbjct: 219 ---GRMGCYGDALDVFREMQMVGIEPDEISIIAVLPACAQLGALEVGKWIHMYADKNGFL 275

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIE--TARKALEV 271
            K  IC+ ++I  +   G +++A  +F + VEKD++ ++ MI G +   +   A +  E 
Sbjct: 276 RKTGICN-ALIEMYAKCGCIDEAWNLFDQLVEKDVISWSTMIGGLANHGKGYEAIQLFEE 334

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ-----QKNVFTWTSMIDGYG 326
            C+ ++    E   LG  L    +  G  D+  + FD M      +  +  +  +ID  G
Sbjct: 335 MCK-VRVAPNEITFLGVLLA--CSHTGLWDEGLKYFDVMSASYHIEPEIEHYGCLIDLLG 391

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           ++G   QAL+    M    ++P+   +   LS+C
Sbjct: 392 RSGCLGQALDTISKMP---IKPDSRIWNSLLSSC 422


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 141/436 (32%), Positives = 239/436 (54%), Gaps = 14/436 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA    TG   + ++  ++L  + K   +     +FDE+P+    +YN +I+ Y +
Sbjct: 269 GQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQ 328

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
             Q E SL   R++   G     + F+ +L  +    S       +GR +H Q L     
Sbjct: 329 ADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSS-----LQMGRQLHCQALL--AT 381

Query: 184 ADDVLYT--ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           AD +L+   +LVD Y K      A ++F  + ++  +  T++ISG++ +G      ++F 
Sbjct: 382 ADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFT 441

Query: 242 K----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           K     +  D   +  +++  S S  +     ++H  +I++   E+V  GS LVDMYAKC
Sbjct: 442 KMRGSNLRADQSTFATVLKA-SASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKC 500

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G I DA +VF+ M  +N  +W ++I  +  NG+   A+  F  M E  +QP+ V+ LG L
Sbjct: 501 GSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVL 560

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           +AC H G V++G E F++M   Y + PK +HYACM+DLLGR G   +A K + EMP +P+
Sbjct: 561 TACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPD 620

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
             +W+++L++CR+H +  +A  AA ++F +       AYV++SN  AAAG+W+ V ++++
Sbjct: 621 EIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKK 680

Query: 478 KMKLRGVLKDTGCSWV 493
            M+ RG+ K    SWV
Sbjct: 681 AMRERGIKKVPAYSWV 696



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 97/378 (25%), Positives = 184/378 (48%), Gaps = 14/378 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGA--LKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           ++HA   K G   N  +++  ++L   C    L  A  +F+E+P++    +N +I GY K
Sbjct: 168 QVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEK 227

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G   ES+ L  K+  SG +P  +TFS +LKA             LG+ +HA  +     
Sbjct: 228 DGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFA-----LGQQLHALSVTTGFS 282

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +   ++D Y K  +    R++FD M E + +    +IS +      E +   FR+ 
Sbjct: 283 RDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREM 342

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
                ++    +  M+   + ++ + +   ++HCQ +       + +G++LVDMYAKC  
Sbjct: 343 QCMGFDRRNFPFATML-SIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEM 401

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
            ++A  +F  + Q+   +WT++I GY + G     L+LF  M+   ++ +  TF   L A
Sbjct: 402 FEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKA 461

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
                 +  G+++   + R  +++      + +VD+  + GS++ A++   EMP++ N+ 
Sbjct: 462 SASFASLLLGKQLHAFIIRSGNLENVFSG-SGLVDMYAKCGSIKDAVQVFEEMPDR-NAV 519

Query: 420 VWAALLSSCRLHDDVEMA 437
            W AL+S+   + D E A
Sbjct: 520 SWNALISAHADNGDGEAA 537



 Score = 92.4 bits (228), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 80/362 (22%), Positives = 154/362 (42%), Gaps = 21/362 (5%)

Query: 73  KTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLS 132
           K  V  NT IS      H+K G +  A  +FD +P RT+  +  ++  Y +N   +E+  
Sbjct: 77  KNTVSTNTMISG-----HVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFK 131

Query: 133 LVRKLV--SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT 190
           L R++   SS   PD  TF+ +L        N  +P+N    VHA  +K     +  L  
Sbjct: 132 LFRQMCRSSSCTLPDHVTFTTLLPG-----CNDAVPQNAVGQVHAFAVKLGFDTNPFLTV 186

Query: 191 A--LVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI 248
           +  L+ SY +  +   A ++F+ + EK+ +   ++I+G+   G   ++  +F K  +   
Sbjct: 187 SNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGH 246

Query: 249 VVYNAMIEGY---SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARR 305
              +    G     + +       ++H   +   F  D  +G+ ++D Y+K  ++ + R 
Sbjct: 247 QPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRM 306

Query: 306 VFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365
           +FD M + +  ++  +I  Y +      +L  F  MQ          F   LS   +   
Sbjct: 307 LFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSS 366

Query: 366 VDKGREIFESMERDYSMKPKMEHYA-CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAAL 424
           +  GR++    +   +    + H    +VD+  +    E+A      +P++     W AL
Sbjct: 367 LQMGRQL--HCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVS-WTAL 423

Query: 425 LS 426
           +S
Sbjct: 424 IS 425



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 38/227 (16%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           R V A+I+K     D      +V+  ++ G+ S AR V+D M  KN + + +MISG +  
Sbjct: 33  RRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKT 92

Query: 231 GFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS--IETARKALEVHCQ-----LIKNVFFED 283
           G V  A ++F    ++ +V +  ++  Y+ +   + A K     C+     L  +V F  
Sbjct: 93  GDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTT 152

Query: 284 ---------------------VKLG----------SALVDMYAKCGKIDDARRVFDHMQQ 312
                                VKLG          + L+  Y +  ++D A  +F+ + +
Sbjct: 153 LLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPE 212

Query: 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           K+  T+ ++I GY K+G   +++ LF  M++   QP+  TF G L A
Sbjct: 213 KDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKA 259



 Score = 45.4 bits (106), Expect = 0.067,   Method: Compositional matrix adjust.
 Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 4/111 (3%)

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           V  ++IK  F  D    + +V+   + G++  AR+V+D M  KN  +  +MI G+ K G+
Sbjct: 35  VDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGD 94

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
            + A +LF  M +  V   +   +G  +   H    D+  ++F  M R  S
Sbjct: 95  VSSARDLFDAMPDRTV-VTWTILMGWYARNSH---FDEAFKLFRQMCRSSS 141


>gi|296084925|emb|CBI28334.3| unnamed protein product [Vitis vinifera]
          Length = 604

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 160/454 (35%), Positives = 239/454 (52%), Gaps = 33/454 (7%)

Query: 66  KIHAHITKTGVKPNTNISIKLLI----LHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           +IHA + KT +  N   ++  LI    L    G L YA  +F  +       +  +I G+
Sbjct: 24  QIHAQMIKTNL-LNHQFTVSRLIAFCSLSGVSGGLDYASSVFSRIQHPNSFIFFALIKGF 82

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
                  ESL L  +++S      G  FS+      C +    L  + GR VH Q+LK  
Sbjct: 83  SDTSNPVESLILYARMLSCLNYSSGVEFSIPSVLKACGK---LLAFDEGRQVHGQVLKTH 139

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +  D  +  ++V  Y+  G+   AR VFD M  ++V+   SMI+G++  G +E A E+F 
Sbjct: 140 LWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRDVVSWNSMIAGYLKAGEIELASELFD 199

Query: 242 KTVEKDIVVYNAMIEGY-----SISIETARKALEVHCQLIKNV-FFEDVK---------- 285
           +  E+D+V  NAMI+GY     S+ +     A+      I ++ F E+ K          
Sbjct: 200 EMPERDLVSCNAMIDGYGKEMLSLGLRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNK 259

Query: 286 -------LGSALVDMYAKCGKIDDARRVFDHM-QQKNVFTWTSMIDGYGKNGNPNQALEL 337
                  +GSAL+DMY+KCG I++A  VF  +  ++N+  W SMI G   +G   +AL++
Sbjct: 260 IELSSGFIGSALIDMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIHGLAREALDI 319

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
           F  M+   ++PN +TFLG LS C H GLV++G+  FESM   Y + P+++HY CM+DL G
Sbjct: 320 FVEMERMDIEPNEITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFG 379

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457
           RAG LE AL  +  MP + +   W A+LS+   H  +E+   AA    +L A D   +YV
Sbjct: 380 RAGRLEDALGVIQNMPFEADLLAWKAILSASMKHGHIEIGKSAALRAIEL-APDDSSSYV 438

Query: 458 ALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
            LSN  A AG+WD V ++R  M+ RGV K  GCS
Sbjct: 439 LLSNIYAKAGRWDDVAKIRLMMRQRGVKKIAGCS 472



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 96/438 (21%), Positives = 191/438 (43%), Gaps = 66/438 (15%)

Query: 9   SSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTAT------------------SLPS 50
           SSVFS   +      P +  F   ++ +   SNP+ +                   S+PS
Sbjct: 61  SSVFSRIQH------PNSFIFFALIKGFSDTSNPVESLILYARMLSCLNYSSGVEFSIPS 114

Query: 51  ALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRT 110
            L+          G ++H  + KT +  +  +   ++ +++  G ++ A ++FD +P R 
Sbjct: 115 VLKACGKLLAFDEGRQVHGQVLKTHLWFDPFVGNSMVRMYIDFGEIELARRVFDRMPNRD 174

Query: 111 LSAYNYMIAGYLKNGQVEESLSLV-----RKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           + ++N MIAGYLK G++E +  L      R LVS     DGY   M+             
Sbjct: 175 VVSWNSMIAGYLKAGEIELASELFDEMPERDLVSCNAMIDGYGKEML------------- 221

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVD-SYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
             +LG       L+ D  A   + +A+ D  +V+ GK  +A +  + +   +    +++I
Sbjct: 222 --SLG-------LRPDGPAIVSVLSAIADLGFVEEGKWLHAYVSMNKIELSSGFIGSALI 272

Query: 225 SGFMSQGFVEDAEEIFRK-TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFED 283
             +   G++E+A  +FR  +  ++I  +N+MI G +I    AR+AL++  ++ +     +
Sbjct: 273 DMYSKCGYIENAYHVFRSISHRRNIGDWNSMISGLAIH-GLAREALDIFVEMERMDIEPN 331

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQK-----NVFTWTSMIDGYGKNGNPNQALELF 338
                 L+   +  G +++ +  F+ M +K      +  +  MID +G+ G    AL + 
Sbjct: 332 EITFLGLLSTCSHGGLVEEGQFYFESMHEKYKIVPRIQHYGCMIDLFGRAGRLEDALGV- 390

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLG 397
             +Q    + + + +   LSA    G ++ G+    +  R   + P     Y  + ++  
Sbjct: 391 --IQNMPFEADLLAWKAILSASMKHGHIEIGK---SAALRAIELAPDDSSSYVLLSNIYA 445

Query: 398 RAGSLEQALKFVLEMPEK 415
           +AG  +   K  L M ++
Sbjct: 446 KAGRWDDVAKIRLMMRQR 463


>gi|296082942|emb|CBI22243.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 156/463 (33%), Positives = 245/463 (52%), Gaps = 66/463 (14%)

Query: 94  GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
           G + YA Q+F  + +     +N MI G  ++     ++SL  ++ +   RPD +TF  +L
Sbjct: 26  GTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQMENGCVRPDKFTFPFVL 85

Query: 154 KAST-CC-----------------RSN-------VPLPRNLGRMVHAQIL-KCDVKADDV 187
           KA T  C                  SN       +    N G +  A+ L     K D V
Sbjct: 86  KACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGDLAVARALFDGSAKRDVV 145

Query: 188 LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKD 247
            ++AL   Y + G+   AR +FD M  K+++    MI+G+  +G +E A ++F +  ++D
Sbjct: 146 AWSALTAGYARRGELGVARQLFDEMPVKDLVSWNVMITGYAKRGEMESARKLFDEVPKRD 205

Query: 248 IVVYNAMIEGYSISIETARKALE-----------------------------------VH 272
           +V +NAMI GY +   + ++ALE                                   +H
Sbjct: 206 VVTWNAMIAGYVLC-GSNQQALEMFEEMRSVGELPDEVTMLSLLSACTDLGDLDAGQRIH 264

Query: 273 CQLIKNVFFED--VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           C  I  + F D  V LG+AL+DMYAKCG I  A  VF  M++K+V TW S++ G   +G+
Sbjct: 265 C-CISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMREKDVSTWNSVLGGLAFHGH 323

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
             +++ LF  M++  ++P+ +TF+G L AC HAG V++GR+ F+ M  +Y+++P + HY 
Sbjct: 324 AEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGRQYFDLMRDEYNIEPNIRHYG 383

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
           CMVDLLGRAG L +A  F+  M  +PN+ VW  LL +CR+H +VE+   A  ++ K+  +
Sbjct: 384 CMVDLLGRAGLLNEAFDFIDTMKIEPNAIVWRTLLGACRIHGNVELGRRANMQLLKMR-H 442

Query: 451 DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           D  G YV LSN  A+ G+WD V ++R+ M   GV K+ GCS +
Sbjct: 443 DESGDYVLLSNIYASRGEWDGVEKVRKLMDDSGVRKEAGCSLI 485



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 94/431 (21%), Positives = 176/431 (40%), Gaps = 71/431 (16%)

Query: 3   NLSRIRSSVFSSTHNRHYTLVPPNQTFP----PKLQNYDSL-------SNPLTATSLPSA 51
           N S +R  +++S+     T+   +Q FP    P    ++++        +PL A SL S 
Sbjct: 9   NTSALRELIYASSIAISGTMAYAHQLFPHITEPDTFMWNTMIRGSAQSPSPLNAISLYSQ 68

Query: 52  LQH-YINSDT---PFY------------GLKIHAHITKTGVKPNTNISIKLLILHLKC-- 93
           +++  +  D    PF             G  +H  + + G + NT +   L+  H  C  
Sbjct: 69  MENGCVRPDKFTFPFVLKACTRLCWVKMGFGVHGRVFRLGFESNTFVRNTLIYFHANCGD 128

Query: 94  -----------------------------GALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
                                        G L  A Q+FDE+P + L ++N MI GY K 
Sbjct: 129 LAVARALFDGSAKRDVVAWSALTAGYARRGELGVARQLFDEMPVKDLVSWNVMITGYAKR 188

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
           G++E +    RKL     + D  T++ ++     C SN         M     L  +V  
Sbjct: 189 GEMESA----RKLFDEVPKRDVVTWNAMIAGYVLCGSNQQALEMFEEMRSVGELPDEVTM 244

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
             +L        +  G+  +  I      + +V+   ++I  +   G +  A E+F+   
Sbjct: 245 LSLLSACTDLGDLDAGQRIHCCISEMGFRDLSVLLGNALIDMYAKCGSIVRALEVFQGMR 304

Query: 245 EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDAR 304
           EKD+  +N+++ G +     A K++ +  ++ K     D      ++   +  G++++ R
Sbjct: 305 EKDVSTWNSVLGGLAFH-GHAEKSIHLFTEMRKLKIRPDEITFVGVLVACSHAGRVEEGR 363

Query: 305 RVFDHMQ-----QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           + FD M+     + N+  +  M+D  G+ G  N+A +    M+   ++PN + +   L A
Sbjct: 364 QYFDLMRDEYNIEPNIRHYGCMVDLLGRAGLLNEAFDFIDTMK---IEPNAIVWRTLLGA 420

Query: 360 CGHAGLVDKGR 370
           C   G V+ GR
Sbjct: 421 CRIHGNVELGR 431


>gi|255584337|ref|XP_002532904.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527338|gb|EEF29484.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 604

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 151/433 (34%), Positives = 229/433 (52%), Gaps = 25/433 (5%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGAL--KYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           IH H+ K G   +  +   L+  + KCG L   YA ++F E+ ++ L ++N MI G +K 
Sbjct: 143 IHCHVEKYGFFGDLFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKA 202

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
           G     L   RKL       D  +++ IL                G M  A  L   +  
Sbjct: 203 G----DLGRARKLFDEMAERDAVSWNTILDGYV----------KAGEMSQAFNLFEKMPE 248

Query: 185 DDVL-YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +V+ ++ +V  Y K G    AR++FD M  KN++  T +ISGF  +G  ++A  ++ + 
Sbjct: 249 RNVVSWSTMVSGYCKTGDMEMARMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQM 308

Query: 244 VEKDIVVYNAMIEGYSISIETARKAL-----EVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
               +   +  +   SI    A   L     +VH  + K      V + +ALVDMYAKCG
Sbjct: 309 EAAGLKPDDGTL--ISILAACAESGLLVLGKKVHASIKKIRIKCSVNVSNALVDMYAKCG 366

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           ++D A  +F+ M  +++ +W  M+ G   +G+  +A++LF  MQ+   +P+ VT +  L 
Sbjct: 367 RVDKALSIFNEMSMRDLVSWNCMLQGLAMHGHGEKAIQLFSKMQQEGFKPDKVTLIAILC 426

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC HAG VD+G   F SMERD+ + P +EHY CM+DLLGR G LE+A + V  MP +PN 
Sbjct: 427 ACTHAGFVDQGLSYFNSMERDHGIVPHIEHYGCMIDLLGRGGRLEEAFRLVQSMPMEPND 486

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            +W  LL +CR+H+ V +A    + +  L  +D PG Y  LSN  AAAG W+SV  +R +
Sbjct: 487 VIWGTLLGACRVHNAVPLAEKVLDRLITLEQSD-PGNYSMLSNIFAAAGDWNSVANMRLQ 545

Query: 479 MKLRGVLKDTGCS 491
           MK  GV K +G S
Sbjct: 546 MKSTGVQKPSGAS 558



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 186/374 (49%), Gaps = 14/374 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++HA I K  +  +  ++ KL+     C  +  A  +F+++    +  YN +I  +++N 
Sbjct: 41  EVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNS 100

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           Q  ++ +    +  +G   D +T+  +LKA   C     LP    +M+H  + K     D
Sbjct: 101 QSLKAFATFFDMQKNGLFADNFTYPFLLKA---CNGKGWLPTV--QMIHCHVEKYGFFGD 155

Query: 186 DVLYTALVDSYVKGG--KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
             +  +L+DSY K G    +YA  +F  M EK+++   SMI G +  G +  A ++F + 
Sbjct: 156 LFVPNSLIDSYSKCGLLGVNYAMKLFMEMGEKDLVSWNSMIGGLVKAGDLGRARKLFDEM 215

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
            E+D V +N +++GY  + E ++        L + +   +V   S +V  Y K G ++ A
Sbjct: 216 AERDAVSWNTILDGYVKAGEMSQA-----FNLFEKMPERNVVSWSTMVSGYCKTGDMEMA 270

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
           R +FD M  KN+ TWT +I G+ + G   +A  L+  M+   ++P+  T +  L+AC  +
Sbjct: 271 RMLFDKMPFKNLVTWTIIISGFAEKGLAKEATTLYNQMEAAGLKPDDGTLISILAACAES 330

Query: 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA 423
           GL+  G+++  S+++   +K  +     +VD+  + G +++AL    EM  + +   W  
Sbjct: 331 GLLVLGKKVHASIKK-IRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMR-DLVSWNC 388

Query: 424 LLSSCRLHDDVEMA 437
           +L    +H   E A
Sbjct: 389 MLQGLAMHGHGEKA 402



 Score = 65.1 bits (157), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 49/191 (25%), Positives = 88/191 (46%), Gaps = 23/191 (12%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G K+HA I K  +K + N+S  L+ ++ KCG +  A  +F+E+  R L ++N M+ G   
Sbjct: 336 GKKVHASIKKIRIKCSVNVSNALVDMYAKCGRVDKALSIFNEMSMRDLVSWNCMLQGLAM 395

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV---------PLPRNLGRMVH 174
           +G  E+++ L  K+   G +PD  T   IL A  C  +            + R+ G + H
Sbjct: 396 HGHGEKAIQLFSKMQQEGFKPDKVTLIAILCA--CTHAGFVDQGLSYFNSMERDHGIVPH 453

Query: 175 AQILKCDVKADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFV 233
            +   C           ++D   +GG+   A R+V  M +E N +   +++        V
Sbjct: 454 IEHYGC-----------MIDLLGRGGRLEEAFRLVQSMPMEPNDVIWGTLLGACRVHNAV 502

Query: 234 EDAEEIFRKTV 244
             AE++  + +
Sbjct: 503 PLAEKVLDRLI 513



 Score = 53.5 bits (127), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/231 (23%), Positives = 99/231 (42%), Gaps = 13/231 (5%)

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
           EVH Q+IK     D+ +   L+  ++ C +++ A  VF+ +Q  NV  + ++I  + +N 
Sbjct: 41  EVHAQIIKRNLHNDLYVAPKLISAFSLCHQMNLAVNVFNQIQDPNVHLYNTLIRAHVQNS 100

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
              +A   F  MQ+  +  +  T+   L AC   G +   + I   +E+ Y     +   
Sbjct: 101 QSLKAFATFFDMQKNGLFADNFTYPFLLKACNGKGWLPTVQMIHCHVEK-YGFFGDLFVP 159

Query: 390 ACMVDLLGRAGSL--EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
             ++D   + G L    A+K  +EM EK +   W +++       D+      A ++F  
Sbjct: 160 NSLIDSYSKCGLLGVNYAMKLFMEMGEK-DLVSWNSMIGGLVKAGDLG----RARKLFDE 214

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498
            A     ++  + +    AG+      L EKM  R V+     SW    SG
Sbjct: 215 MAERDAVSWNTILDGYVKAGEMSQAFNLFEKMPERNVV-----SWSTMVSG 260


>gi|357517875|ref|XP_003629226.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523248|gb|AET03702.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 510

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 145/440 (32%), Positives = 246/440 (55%), Gaps = 14/440 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGA--LKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           + HA I   G K +  I+ KL+  + + G   +++A ++FD+L +R +  +N +I GY  
Sbjct: 38  QTHAQIIIGGHKQDPFIAAKLIDKYSQLGGTNVEHARKVFDDLSERDVFCWNNVIKGYAN 97

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G   E+L +   +  SG  P+ YT+  +LKA    R  +      GR++H  ++KC ++
Sbjct: 98  MGPFAEALHVYNAMRLSGAAPNRYTYPFVLKACGAERDCLK-----GRIIHGNVVKCGLE 152

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +  A V  Y K  +   +R VFD MLE++++   SM+SG+++ G+V++A  +F   
Sbjct: 153 FDLFVGNAFVAFYAKCKEIEASRKVFDEMLERDIVSWNSMMSGYIANGYVDEAVMLFCDM 212

Query: 244 VEKDIVVYNAMIEGYSISIETARKA-----LEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
           +  D + +       ++    A KA       +HC ++K     D  +G  L+ +Y+ CG
Sbjct: 213 LRDDGIGFPDNATLVTVLPAFAEKADIHAGYWIHCYIVKTGMKLDPAVGCGLITLYSNCG 272

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            I  A+ VFD +  +NV  W+++I  YG +G   +AL +F  + E  +  + + FL  LS
Sbjct: 273 YIRMAKAVFDQIPDRNVIVWSAIIRCYGMHGFAQEALSMFRQLVELGLHLDGIVFLSLLS 332

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC HAG+ ++G  +F++ME  Y +     HYACMVDLLGRAG+LE+A++ +  MP +P  
Sbjct: 333 ACSHAGMHEEGWHLFQTME-TYGVVKGEAHYACMVDLLGRAGNLEKAMELIQSMPIQPGK 391

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
           +V+ ALL + R+H ++E+A +AA ++F L+ N+  G YV L+      G+W     LR+ 
Sbjct: 392 NVYGALLGASRIHKNIELAELAAEKLFVLDPNN-AGRYVILAQMYEDEGRWKDAARLRKI 450

Query: 479 MKLRGVLKDTGCSWVGTESG 498
           ++ + + K  G S V  ESG
Sbjct: 451 IREKEIKKPIGYSSVELESG 470



 Score = 98.6 bits (244), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 89/338 (26%), Positives = 162/338 (47%), Gaps = 39/338 (11%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTS--YARIVFDMMLEKNVICSTSMISGFM 228
           +  HAQI+    K D  +   L+D Y + G T+  +AR VFD + E++V C  ++I G+ 
Sbjct: 37  KQTHAQIIIGGHKQDPFIAAKLIDKYSQLGGTNVEHARKVFDDLSERDVFCWNNVIKGYA 96

Query: 229 SQGFVEDAEEIFRKTVEKDIVVYNAM-IEG-------YSISIETA---RKALE---VHCQ 274
           + G   +A           + VYNAM + G       Y   ++     R  L+   +H  
Sbjct: 97  NMGPFAEA-----------LHVYNAMRLSGAAPNRYTYPFVLKACGAERDCLKGRIIHGN 145

Query: 275 LIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQA 334
           ++K     D+ +G+A V  YAKC +I+ +R+VFD M ++++ +W SM+ GY  NG  ++A
Sbjct: 146 VVKCGLEFDLFVGNAFVAFYAKCKEIEASRKVFDEMLERDIVSWNSMMSGYIANGYVDEA 205

Query: 335 LELFC-MMQECCVQ-PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME---HY 389
           + LFC M+++  +  P+  T +  L A      +  G  I       Y +K  M+     
Sbjct: 206 VMLFCDMLRDDGIGFPDNATLVTVLPAFAEKADIHAGYWI-----HCYIVKTGMKLDPAV 260

Query: 390 AC-MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
            C ++ L    G +  A     ++P++ N  VW+A++    +H   + A     ++ +L 
Sbjct: 261 GCGLITLYSNCGYIRMAKAVFDQIPDR-NVIVWSAIIRCYGMHGFAQEALSMFRQLVELG 319

Query: 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLK 486
            +     +++L +  + AG  +    L + M+  GV+K
Sbjct: 320 LHLDGIVFLSLLSACSHAGMHEEGWHLFQTMETYGVVK 357



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 74/302 (24%), Positives = 138/302 (45%), Gaps = 49/302 (16%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH ++ K G++ +  +    +  + KC  ++ + ++FDE+ +R + ++N M++GY+ 
Sbjct: 139 GRIIHGNVVKCGLEFDLFVGNAFVAFYAKCKEIEASRKVFDEMLERDIVSWNSMMSGYIA 198

Query: 124 NGQVEESLSLVRKLVSSG--ERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           NG V+E++ L   ++       PD  T   +L A    ++++    + G  +H  I+K  
Sbjct: 199 NGYVDEAVMLFCDMLRDDGIGFPDNATLVTVLPAFA-EKADI----HAGYWIHCYIVKTG 253

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +K D  +   L+  Y   G    A+ VFD + ++NVI  +++I  +   GF ++A  +FR
Sbjct: 254 MKLDPAVGCGLITLYSNCGYIRMAKAVFDQIPDRNVIVWSAIIRCYGMHGFAQEALSMFR 313

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
           + VE                       L +H   I  VF        +L+   +  G  +
Sbjct: 314 QLVE-----------------------LGLHLDGI--VFL-------SLLSACSHAGMHE 341

Query: 302 DARRVFDHMQQKNVFT----WTSMIDGYGKNGNPNQALELFCMMQECCVQPN---YVTFL 354
           +   +F  M+   V      +  M+D  G+ GN  +A+EL   +Q   +QP    Y   L
Sbjct: 342 EGWHLFQTMETYGVVKGEAHYACMVDLLGRAGNLEKAMEL---IQSMPIQPGKNVYGALL 398

Query: 355 GA 356
           GA
Sbjct: 399 GA 400



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/121 (31%), Positives = 63/121 (52%), Gaps = 1/121 (0%)

Query: 37  DSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGAL 96
           D +  P  AT L + L  +        G  IH +I KTG+K +  +   L+ L+  CG +
Sbjct: 216 DGIGFPDNAT-LVTVLPAFAEKADIHAGYWIHCYIVKTGMKLDPAVGCGLITLYSNCGYI 274

Query: 97  KYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAS 156
           + A  +FD++P R +  ++ +I  Y  +G  +E+LS+ R+LV  G   DG  F  +L A 
Sbjct: 275 RMAKAVFDQIPDRNVIVWSAIIRCYGMHGFAQEALSMFRQLVELGLHLDGIVFLSLLSAC 334

Query: 157 T 157
           +
Sbjct: 335 S 335



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 59/112 (52%), Gaps = 2/112 (1%)

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG--KIDDARRVFDHMQQKNVFTWTS 320
           +T  +  + H Q+I     +D  + + L+D Y++ G   ++ AR+VFD + +++VF W +
Sbjct: 31  KTIDRIKQTHAQIIIGGHKQDPFIAAKLIDKYSQLGGTNVEHARKVFDDLSERDVFCWNN 90

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           +I GY   G   +AL ++  M+     PN  T+   L ACG      KGR I
Sbjct: 91  VIKGYANMGPFAEALHVYNAMRLSGAAPNRYTYPFVLKACGAERDCLKGRII 142


>gi|414866530|tpg|DAA45087.1| TPA: hypothetical protein ZEAMMB73_840863 [Zea mays]
          Length = 851

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 157/507 (30%), Positives = 260/507 (51%), Gaps = 64/507 (12%)

Query: 27  QTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKL 86
            T P       ++  P +  S  S L+ Y+      +GL   A      +    +IS  +
Sbjct: 94  HTLPDAAAALATIPYPPSVVSFTSLLRGYVR-----HGLLADAIQLFRQMPERNHISYTV 148

Query: 87  LIL-HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV-----RKLVSS 140
           L+   L  G +  A ++FDE+P + + A+  M++GY + G+V+E+ +L      R +VS 
Sbjct: 149 LLGGFLDAGRVDEARKLFDEMPAKDVVAWTAMLSGYCQVGRVDEARTLFDEMPKRNVVSW 208

Query: 141 GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGG 200
                GY               V L R L  ++  +        ++V +TA++  Y++ G
Sbjct: 209 TAMVSGY----------AQNGQVNLARKLFEVMPER--------NEVSWTAMLFGYIQAG 250

Query: 201 KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS- 259
           +   A  +F+ M +  +     MI GF  QG V+ A+ +F +  E+D   ++A+I+ Y  
Sbjct: 251 RIEDAEELFNAMPDHPLAACNGMIVGFGQQGMVDAAKSVFDRMCERDDGTWSAIIKAYEQ 310

Query: 260 --------------------------ISIETARKAL-------EVHCQLIKNVFFEDVKL 286
                                     ISI T   AL       EVH  +++  F  D+  
Sbjct: 311 NEFLMEALSTFREMLHIGIRPNYPSVISILTVCAALAVLDYGREVHGAMLRRSFDMDIYA 370

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
            SAL+ MY KCG +D A+RVF   + K+V  W SMI GY ++G   +AL +F  M+   +
Sbjct: 371 VSALITMYIKCGNLDKAKRVFHMFEPKDVVMWNSMITGYAQHGLGEEALHIFDDMRLAGM 430

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
            P+ +T++GAL+AC + G V +GR+IF SM     +KP +EHYACMVDLLGRAG +++AL
Sbjct: 431 VPDGITYIGALTACSYTGKVKEGRDIFNSMRTKSGIKPGLEHYACMVDLLGRAGLVDEAL 490

Query: 407 KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
             +  MP +P++ +W AL+ +CR+H + E+A I+A ++ +L   +  G YV LS+   ++
Sbjct: 491 YLIKTMPVEPDAVIWGALMGACRMHKNAEIAEISAKKLLELEPGN-AGPYVLLSHIYTSS 549

Query: 467 GKWDSVTELREKMKLRGVLKDTGCSWV 493
           G+W+  + +R+ +  R + K  GCSW+
Sbjct: 550 GRWEDASNMRKFISSRHLNKSLGCSWI 576



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/455 (23%), Positives = 207/455 (45%), Gaps = 64/455 (14%)

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL-----VRKLVSSGERPDG 146
           + G ++ A   F+ +P RT ++YN ++AGY +N   + +L +      R L S      G
Sbjct: 29  RTGNMEGARATFEAMPLRTTASYNALLAGYFRNHLPDAALRVFHRMPTRDLASYNALISG 88

Query: 147 YTFSM-ILKASTCCRSNVPLPRNL--------GRMVHA------QILKCDVKADDVLYTA 191
            +     L  +    + +P P ++        G + H       Q+ +   + + + YT 
Sbjct: 89  LSLRRHTLPDAAAALATIPYPPSVVSFTSLLRGYVRHGLLADAIQLFRQMPERNHISYTV 148

Query: 192 LVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVY 251
           L+  ++  G+   AR +FD M  K+V+  T+M+SG+   G V++A  +F +  ++++V +
Sbjct: 149 LLGGFLDAGRVDEARKLFDEMPAKDVVAWTAMLSGYCQVGRVDEARTLFDEMPKRNVVSW 208

Query: 252 NAMIEGYSIS--IETARKALEVHCQ------------LIKNVFFEDV-KLGSALVDM--- 293
            AM+ GY+ +  +  ARK  EV  +             I+    ED  +L +A+ D    
Sbjct: 209 TAMVSGYAQNGQVNLARKLFEVMPERNEVSWTAMLFGYIQAGRIEDAEELFNAMPDHPLA 268

Query: 294 --------YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
                   + + G +D A+ VFD M +++  TW+++I  Y +N    +AL  F  M    
Sbjct: 269 ACNGMIVGFGQQGMVDAAKSVFDRMCERDDGTWSAIIKAYEQNEFLMEALSTFREMLHIG 328

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
           ++PNY + +  L+ C    ++D GRE+  +M R  S    +   + ++ +  + G+L++A
Sbjct: 329 IRPNYPSVISILTVCAALAVLDYGREVHGAMLRR-SFDMDIYAVSALITMYIKCGNLDKA 387

Query: 406 LKFVLEMPEKPNSDVWAALLSSCRLH----------DDVEMANIAANEIFKLNANDRPGA 455
            K V  M E  +  +W ++++    H          DD+ +A +  + I  +      GA
Sbjct: 388 -KRVFHMFEPKDVVMWNSMITGYAQHGLGEEALHIFDDMRLAGMVPDGITYI------GA 440

Query: 456 YVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGC 490
             A S T       D    +R K  ++  L+   C
Sbjct: 441 LTACSYTGKVKEGRDIFNSMRTKSGIKPGLEHYAC 475


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 148/441 (33%), Positives = 236/441 (53%), Gaps = 15/441 (3%)

Query: 59  DTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMI 118
           DT F G ++H  + KT    N  +   LL  + K   +   G++F E+P+    +YN +I
Sbjct: 256 DTKF-GQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVI 314

Query: 119 AGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
             Y  NGQ +ES  L RKL  +      + F+ +L  +T       L   +GR +H Q +
Sbjct: 315 TSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATS-----SLNLRMGRQIHCQAI 369

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
                 +  +  ALVD Y K      A+ +FD +  K+ +  T+MIS ++ +G  E+   
Sbjct: 370 TVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGIN 429

Query: 239 IF----RKTVEKDIVVYNAMIEGYS--ISIETARKALEVHCQLIKNVFFEDVKLGSALVD 292
           +F    R  V  D   + +++   +   SI   R   ++H  LI++ F  +V  GSAL+D
Sbjct: 430 VFSDMRRTGVPADQATFASILRACANLASISLGR---QLHSLLIRSGFMSNVYSGSALLD 486

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
            YAKCG + DA + F  M ++N  +W ++I  Y +NGN +  L  F  M +   +P+ V+
Sbjct: 487 TYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVS 546

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
           FL  LSAC H G V++    F SM + Y + PK EHY  MVD+L R G  ++A K + EM
Sbjct: 547 FLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEM 606

Query: 413 PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSV 472
           P +P+  +W+++L+SCR+H + E+A  AA+ +F +        Y+ +SN  A AG+WD+V
Sbjct: 607 PFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNV 666

Query: 473 TELREKMKLRGVLKDTGCSWV 493
            ++++ M+ RGV K    SWV
Sbjct: 667 AKVKKAMRDRGVRKVPAYSWV 687



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 178/367 (48%), Gaps = 12/367 (3%)

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           ++IH H+ K G + N  +   L+  + K   L  A Q+F  +  +    +N ++ GY   
Sbjct: 160 VQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNE 219

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
           G  EE++ L  +L +SG +P  +TF+ +L A+             G+ VH  +LK +   
Sbjct: 220 GLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDT-----KFGQQVHGFVLKTNFVW 274

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK-- 242
           +  +  AL+D Y K  +      +F  M E + I    +I+ +   G  +++ ++FRK  
Sbjct: 275 NVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQ 334

Query: 243 --TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
               ++    +  ++   + S+   R   ++HCQ I      + ++ +ALVDMYAKC   
Sbjct: 335 FTRFDRRQFPFATLLSIATSSLNL-RMGRQIHCQAITVGANFESRVENALVDMYAKCNGD 393

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
            +A+++FD++  K+   WT+MI  Y + G   + + +F  M+   V  +  TF   L AC
Sbjct: 394 KEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRAC 453

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            +   +  GR++   + R   M   +   + ++D   + G +  A+K   EMPE+ NS  
Sbjct: 454 ANLASISLGRQLHSLLIRSGFMS-NVYSGSALLDTYAKCGCMTDAIKSFGEMPER-NSVS 511

Query: 421 WAALLSS 427
           W AL+S+
Sbjct: 512 WNALISA 518



 Score =  114 bits (286), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 93/397 (23%), Positives = 185/397 (46%), Gaps = 45/397 (11%)

Query: 67  IHAHITKTGVKPNT------------------------------NISIKLLIL-HLKCGA 95
           I AHI KTG  PNT                               IS+ ++I  HLK G 
Sbjct: 30  IDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGK 89

Query: 96  LKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           L  A ++FD + +RT  ++  +I GYL++ Q +E+  L   +   G  PD  T   +L  
Sbjct: 90  LSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSG 149

Query: 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
                +     +N+   +H  ++K   + + ++  +LVD+Y K      A  +F  ML K
Sbjct: 150 FGELET-----KNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNK 204

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEV 271
           + +   S+++G+ ++G  E+A E+F +     I      + A++   ++ ++  +   +V
Sbjct: 205 DTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSA-AVGLDDTKFGQQV 263

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
           H  ++K  F  +V +G+AL+D Y+K  ++D+  ++F  M + +  ++  +I  Y  NG  
Sbjct: 264 HGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQF 323

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF-ESMERDYSMKPKMEHYA 390
            ++ +LF  +Q          F   LS    +  +  GR+I  +++    + + ++E+  
Sbjct: 324 KESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIHCQAITVGANFESRVEN-- 381

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
            +VD+  +    ++A K    +  K ++  W A++S+
Sbjct: 382 ALVDMYAKCNGDKEAQKIFDNIACK-STVPWTAMISA 417


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  256 bits (654), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 155/455 (34%), Positives = 240/455 (52%), Gaps = 12/455 (2%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
           TS+ SAL      D   YG +IH    K G+    ++   L+ ++ KCG L  A + F+ 
Sbjct: 218 TSVLSALT---VPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFEL 274

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
              +    ++ MI GY + G   E+L+L   +  +G +P  +TF  ++ A   C     L
Sbjct: 275 SGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINA---CSDIGAL 331

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
               G+ +H   LK   +      TALVD Y K G    AR  FD + E +++  TSMIS
Sbjct: 332 EE--GKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMIS 389

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFE 282
           G+   G  E A  ++ +   + I+ +    A +     S+    +  ++H Q IK  F  
Sbjct: 390 GYAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSL 449

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           +V +GSAL  MYAKCG ++D   VF  M  +++ TW +MI G  +NG   +ALELF  ++
Sbjct: 450 EVPIGSALSTMYAKCGSLEDGNLVFRRMPSRDIMTWNAMISGLSQNGEGLKALELFEELR 509

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
               +P+YVTF+  LSAC H GLV++G+  F  M  ++ + P++EHYACMVD+L RAG L
Sbjct: 510 HGTTKPDYVTFVNVLSACSHMGLVERGKVYFRMMLDEFGIVPRVEHYACMVDILSRAGKL 569

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
            +  +F+          +W  LL +CR + + E+   A  ++ +L + +   AY+ LS+ 
Sbjct: 570 HETKEFIESATIDHGMCLWRILLGACRNYRNYELGAYAGEKLMELGSQE-SSAYILLSSI 628

Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTES 497
             A G+ D V  +R  MKLRGV K+ GCSW+  +S
Sbjct: 629 YTALGRSDDVERVRRLMKLRGVNKEPGCSWIELKS 663



 Score =  164 bits (416), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 106/374 (28%), Positives = 195/374 (52%), Gaps = 24/374 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IHA + +TG   +  ++  L+ L+ KCG++  A  +F+ +  + + ++N +I GY +
Sbjct: 29  GKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLINGYSQ 88

Query: 124 NGQVEES--LSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRM-VHAQILKC 180
            G V  S  + L +++ +    P+G+TFS +  A++        P   G +  HA  +K 
Sbjct: 89  KGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSS------PETFGGLQAHALAIKT 142

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
               D  + ++L++ Y K G    AR VFD + E+N +   ++ISG+  +    +A E+F
Sbjct: 143 SNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELF 202

Query: 241 ----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
               R+    D  +Y +++   ++  +      ++HC  +KN       +G+ALV MY K
Sbjct: 203 XLMRREEGAHDKFIYTSVLSALTVP-DLVHYGKQIHCLALKNGLLSIASVGNALVTMYGK 261

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG +DDA + F+    K+  TW++MI GY + G+ ++AL LF  M     +P+  TF+G 
Sbjct: 262 CGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGV 321

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKME----HYACMVDLLGRAGSLEQALKFVLEM 412
           ++AC   G +++G++I       YS+K   E        +VD+  + GSL  A K   + 
Sbjct: 322 INACSDIGALEEGKQI-----HGYSLKAGYECQIYFMTALVDMYAKCGSLVDARK-GFDY 375

Query: 413 PEKPNSDVWAALLS 426
            ++P+  +W +++S
Sbjct: 376 LKEPDIVLWTSMIS 389



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 124/467 (26%), Positives = 214/467 (45%), Gaps = 38/467 (8%)

Query: 33  LQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLK 92
           L N  + S   TA S         +S   F GL+ HA   KT    +  +   L+ ++ K
Sbjct: 110 LPNGHTFSGVFTAAS---------SSPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCK 160

Query: 93  CGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
            G +  A ++FD +P+R   ++  +I+GY       E+  L   +       D + ++ +
Sbjct: 161 IGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSV 220

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L A T     VP   + G+ +H   LK  + +   +  ALV  Y K G    A   F++ 
Sbjct: 221 LSALT-----VPDLVHYGKQIHCLALKNGLLSIASVGNALVTMYGKCGCLDDALKTFELS 275

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIF-------RKTVEKDIV-VYNAMIEGYSISIET 264
            +K+ I  ++MI+G+   G   +A  +F        K  E   V V NA  +     I  
Sbjct: 276 GDKDDITWSAMITGYAQAGDSHEALNLFYNMHLNGNKPSEFTFVGVINACSD-----IGA 330

Query: 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
             +  ++H   +K  +   +   +ALVDMYAKCG + DAR+ FD++++ ++  WTSMI G
Sbjct: 331 LEEGKQIHGYSLKAGYECQIYFMTALVDMYAKCGSLVDARKGFDYLKEPDIVLWTSMISG 390

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF-ESMERDYSMK 383
           Y +NG    AL L+C MQ   + P+ +T    L AC     +++G++I  ++++  +S++
Sbjct: 391 YAQNGENETALTLYCRMQMERIMPHELTMASVLRACSSLAALEQGKQIHAQTIKYGFSLE 450

Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANE 443
             +   + +  +  + GSLE        MP + +   W A++S    + +     + A E
Sbjct: 451 VPIG--SALSTMYAKCGSLEDGNLVFRRMPSR-DIMTWNAMISGLSQNGE----GLKALE 503

Query: 444 IF-KLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTG 489
           +F +L        YV   N L+A      V   R K+  R +L + G
Sbjct: 504 LFEELRHGTTKPDYVTFVNVLSACSHMGLVE--RGKVYFRMMLDEFG 548



 Score =  103 bits (258), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/298 (27%), Positives = 146/298 (48%), Gaps = 21/298 (7%)

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           G+ +HAQ+L+    +   L  +LV+ Y K G    A++VF+ +  K+V+    +I+G+  
Sbjct: 29  GKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLINGYSQ 88

Query: 230 QGFV--EDAEEIFRKTVEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFED 283
           +G V      E+F++   ++ +     ++ +    S S ET    L+ H   IK   F D
Sbjct: 89  KGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASSSPETF-GGLQAHALAIKTSNFYD 147

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
           V +GS+L++MY K G + DAR+VFD + ++N  +W ++I GY       +A ELF +M+ 
Sbjct: 148 VFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATIISGYAMERMAFEAWELFXLMRR 207

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA----CMVDLLGRA 399
                +   +   LSA     LV  G++I        ++K  +   A     +V + G+ 
Sbjct: 208 EEGAHDKFIYTSVLSALTVPDLVHYGKQI-----HCLALKNGLLSIASVGNALVTMYGKC 262

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSS-CRLHDDVEMANIAANEIFKLNANDRPGAY 456
           G L+ ALK   E+    +   W+A+++   +  D  E  N+  N    LN N +P  +
Sbjct: 263 GCLDDALK-TFELSGDKDDITWSAMITGYAQAGDSHEALNLFYN--MHLNGN-KPSEF 316



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 93/190 (48%), Gaps = 20/190 (10%)

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
           +K   +H QL++   F  V L ++LV++YAKCG I  A+ VF+ +  K+V +W  +I+GY
Sbjct: 27  QKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAKLVFESITNKDVVSWNCLINGY 86

Query: 326 GKNGNPNQA--LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK 383
            + G    +  +ELF  M+     PN  TF G  +A           E F  ++  +++ 
Sbjct: 87  SQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTA------ASSSPETFGGLQA-HALA 139

Query: 384 PKMEHY------ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
            K  ++      + ++++  + G +  A K    +PE+ N+  WA ++S   +    E  
Sbjct: 140 IKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPER-NTVSWATIISGYAM----ERM 194

Query: 438 NIAANEIFKL 447
              A E+F L
Sbjct: 195 AFEAWELFXL 204


>gi|357127001|ref|XP_003565175.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Brachypodium distachyon]
          Length = 849

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 131/435 (30%), Positives = 250/435 (57%), Gaps = 13/435 (2%)

Query: 66  KIHAHITKTGVKPNTNISIKLLIL-HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           ++HA + + G+    ++    LI  + +CG L +A ++FD +  + +S++N +I  + +N
Sbjct: 292 ELHAFVVRRGLHLTGDMVPNALIAAYGRCGCLLHACRVFDGICSKMVSSWNALIGAHAQN 351

Query: 125 GQVEESLSLVRKLVSS-GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           G+   ++ L R++ ++ G++PD ++   +L A    +  +      G+  H  IL+  ++
Sbjct: 352 GEASAAIELFREMTNACGQKPDWFSIGSLLLACGNLKHLLH-----GKAAHGFILRNGLE 406

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +  +L+  Y++ G+ S AR++FD + EK+ +   +MI+G+   G   ++ ++FR+ 
Sbjct: 407 KDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIAGYSQNGLPGESLQLFREM 466

Query: 244 VEKDIVVYNAMIEGYSI-----SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
             K    + +++   S       +   R   E+HC  +K    ED  L S+++DMY+KCG
Sbjct: 467 QSKKGGHWPSLLAATSALVACSELPAVRLGKEMHCFALKADLCEDSFLSSSIIDMYSKCG 526

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            +DDAR  FD ++ K+  +WT MI GY  NG   +A+ L+  M    ++P+  T+LG L 
Sbjct: 527 SVDDARVFFDRLKAKDAVSWTVMITGYAVNGRGKEAVGLYDKMGREGMEPDGFTYLGLLM 586

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           ACGHAG+++ G   F+ M     ++ K+EHYAC++ +L RAG    A+  +  MPE+P++
Sbjct: 587 ACGHAGMLEDGLCFFQEMRNLPKIEAKLEHYACVIGMLSRAGRFADAVALMEVMPEEPDA 646

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            + +++LS+C +H +VE+    A+++ +L  + +   YV  SN  A + +WD + ++R+ 
Sbjct: 647 KILSSVLSACHMHGEVELGKKVADKLLELEPH-KAEHYVLASNMYAGSRQWDEMRKVRKM 705

Query: 479 MKLRGVLKDTGCSWV 493
           ++  GV K+ GCSW+
Sbjct: 706 LRDAGVAKEPGCSWI 720



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 97/413 (23%), Positives = 188/413 (45%), Gaps = 20/413 (4%)

Query: 27  QTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKL 86
           + F   L++    + P  AT L + L        P  G  +H    K+G      +S  L
Sbjct: 148 ELFRDCLEDLGGTAAPDEAT-LVTVLPMCAALAWPETGRAVHGLAVKSGWDAAPRVSNVL 206

Query: 87  LILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGER 143
           + ++ KCG +  A   F E P    R + ++N M+ GY +NG+   +  L+R++      
Sbjct: 207 VDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGAAFGLLREMQMEERG 266

Query: 144 PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK-ADDVLYTALVDSYVKGGKT 202
                 +M+     C  S +P    L R +HA +++  +    D++  AL+ +Y + G  
Sbjct: 267 VPADEITMLSVLPVC--SGLPELAKL-RELHAFVVRRGLHLTGDMVPNALIAAYGRCGCL 323

Query: 203 SYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV-----EKDIVVYNAMIEG 257
            +A  VFD +  K V    ++I      G    A E+FR+       + D     +++  
Sbjct: 324 LHACRVFDGICSKMVSSWNALIGAHAQNGEASAAIELFREMTNACGQKPDWFSIGSLLLA 383

Query: 258 YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT 317
              +++        H  +++N   +D  +  +L+ +Y +CG+   AR +FD +++K+  +
Sbjct: 384 CG-NLKHLLHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVS 442

Query: 318 WTSMIDGYGKNGNPNQALELFCMMQ--ECCVQPNYVTFLGALSACGHAGLVDKGREIF-E 374
           W +MI GY +NG P ++L+LF  MQ  +    P+ +    AL AC     V  G+E+   
Sbjct: 443 WNTMIAGYSQNGLPGESLQLFREMQSKKGGHWPSLLAATSALVACSELPAVRLGKEMHCF 502

Query: 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
           +++ D      +   + ++D+  + GS++ A  F   +  K ++  W  +++ 
Sbjct: 503 ALKADLCEDSFLS--SSIIDMYSKCGSVDDARVFFDRLKAK-DAVSWTVMITG 552



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 133/261 (50%), Gaps = 17/261 (6%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
            +G   H  I + G++ ++ I + LL ++++CG    A  +FD + ++   ++N MIAGY
Sbjct: 391 LHGKAAHGFILRNGLEKDSFIRVSLLSVYIQCGRESLARVLFDAVEEKDEVSWNTMIAGY 450

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR-NLGRMVHAQILKC 180
            +NG   ESL L R++ S      G  +  +L A++   +   LP   LG+ +H   LK 
Sbjct: 451 SQNGLPGESLQLFREMQSK----KGGHWPSLLAATSALVACSELPAVRLGKEMHCFALKA 506

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA---- 236
           D+  D  L ++++D Y K G    AR+ FD +  K+ +  T MI+G+   G  ++A    
Sbjct: 507 DLCEDSFLSSSIIDMYSKCGSVDDARVFFDRLKAKDAVSWTVMITGYAVNGRGKEAVGLY 566

Query: 237 EEIFRKTVEKDIVVYNAMIE--GYSISIETARKALEVHCQLIKNVFFEDVKLG--SALVD 292
           +++ R+ +E D   Y  ++   G++  +E          Q ++N+   + KL   + ++ 
Sbjct: 567 DKMGREGMEPDGFTYLGLLMACGHAGMLEDGL----CFFQEMRNLPKIEAKLEHYACVIG 622

Query: 293 MYAKCGKIDDARRVFDHMQQK 313
           M ++ G+  DA  + + M ++
Sbjct: 623 MLSRAGRFADAVALMEVMPEE 643



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 99/379 (26%), Positives = 167/379 (44%), Gaps = 43/379 (11%)

Query: 110 TLSAYNYMIAGYLKNGQVEESLSLVRKLV--SSGERPDGYTFSMILKASTCCRSNVPLPR 167
           +L  +N ++A   + G+  ++L+++ +L+  S G  PD +T    LK+   CR +     
Sbjct: 29  SLPQWNGLLADLSRAGRHADALAILPRLLAASDGVAPDRFTLPPALKS---CRGDD---- 81

Query: 168 NLGRMVHAQILKCDVK-ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
             GR VHA   K  +   D  +  +LV  Y + G+   A  VF+ M  +N++   ++++ 
Sbjct: 82  --GRQVHAVAAKLGLADGDPFVGNSLVSMYGRCGRVDDAEKVFEGMAGRNLVSWNALMAA 139

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISI----------ETARKALEVHCQLI 276
                      E+FR  +E D+    A  E   +++          ET R    VH   +
Sbjct: 140 VADP---RRGLELFRDCLE-DLGGTAAPDEATLVTVLPMCAALAWPETGRA---VHGLAV 192

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM---QQKNVFTWTSMIDGYGKNGNPNQ 333
           K+ +    ++ + LVDMYAKCG++ DA   F        +NV +W  M+ GY +NG    
Sbjct: 193 KSGWDAAPRVSNVLVDMYAKCGEMADAECAFLEAPPGAGRNVVSWNVMLGGYARNGEAGA 252

Query: 334 ALELFCMMQ--ECCVQPNYVTFLGALSACGHAGLVDKGREIFE-SMERDYSMKPKMEHYA 390
           A  L   MQ  E  V  + +T L  L  C     + K RE+    + R   +   M   A
Sbjct: 253 AFGLLREMQMEERGVPADEITMLSVLPVCSGLPELAKLRELHAFVVRRGLHLTGDMVPNA 312

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK--LN 448
            ++   GR G L  A +    +  K  S  W AL+ +   + +      AA E+F+   N
Sbjct: 313 -LIAAYGRCGCLLHACRVFDGICSKMVSS-WNALIGAHAQNGEAS----AAIELFREMTN 366

Query: 449 ANDRPGAYVALSNTLAAAG 467
           A  +   + ++ + L A G
Sbjct: 367 ACGQKPDWFSIGSLLLACG 385


>gi|296085795|emb|CBI31119.3| unnamed protein product [Vitis vinifera]
          Length = 512

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 162/471 (34%), Positives = 250/471 (53%), Gaps = 44/471 (9%)

Query: 66  KIHAHITKTGV--KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           +I +H+T +G    P     I         G + +A  +F  LP+RT   +N M+  +  
Sbjct: 6   QIQSHLTVSGTLFDPFAAGRIISFCAVSAQGDISHAYLLFLSLPRRTSFIWNTMLRAFTD 65

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
             +    LSL + ++S+G  P+ YTFS +L+A   C     L  + G ++HAQ ++   +
Sbjct: 66  KKEPATVLSLYKYMLSTGFLPNNYTFSFLLQA---CAQLSDL--SFGILLHAQAVRLGWE 120

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           A D +   L+  Y        AR +FD  + ++V+  T++I+G+   G V  A ++F + 
Sbjct: 121 AYDFVQNGLLHLYASCNCMDSARRLFDGSVNRDVVTWTAVINGYAKSGQVVVARQLFDEM 180

Query: 244 VEKDIVVYNAMIEGYSISIETARKALE--------------------------------- 270
            EK+ V ++AMI GY+  I   R+ALE                                 
Sbjct: 181 PEKNAVSWSAMITGYA-QIGLFREALELFNDMQIAGFRPNHGAIVGALTACAFLGALDQG 239

Query: 271 --VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
             +H  + +N    D  LG+AL+DMYAKCG ++ A RVFD M  ++VF +TS+I G   +
Sbjct: 240 RWIHAYVDRNRMVLDRILGTALIDMYAKCGCVETACRVFDEMLDRDVFAFTSLISGLANH 299

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G+   A+E+F  MQ   V PN VTF+  LSAC   GLV++G  IF+SM   Y ++P ++H
Sbjct: 300 GHSATAIEMFTRMQNEGVCPNEVTFICLLSACSRVGLVEEGLRIFKSMTNIYGIEPVVQH 359

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
           Y C+VDLLGRAG LE A + V EMP +P+S V  ALL++CR+H DVE+      E     
Sbjct: 360 YGCLVDLLGRAGMLEDAKRVVREMPLEPDSYVLGALLNACRVHGDVELGKETV-ECLAER 418

Query: 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           + D  G +V LSN  A+A +W+ V ++R+ M+ + V K  GCS +  +  +
Sbjct: 419 SLDHGGVHVLLSNMYASANQWEDVAKVRKGMEEKKVKKVPGCSLIEVDGAV 469



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 95/215 (44%), Gaps = 14/215 (6%)

Query: 35  NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           N+ ++   LTA +   AL           G  IHA++ +  +  +  +   L+ ++ KCG
Sbjct: 219 NHGAIVGALTACAFLGALDQ---------GRWIHAYVDRNRMVLDRILGTALIDMYAKCG 269

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
            ++ A ++FDE+  R + A+  +I+G   +G    ++ +  ++ + G  P+  TF  +L 
Sbjct: 270 CVETACRVFDEMLDRDVFAFTSLISGLANHGHSATAIEMFTRMQNEGVCPNEVTFICLLS 329

Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA-RIVFDMML 213
           A     S V L     R+  +      ++     Y  LVD   + G    A R+V +M L
Sbjct: 330 AC----SRVGLVEEGLRIFKSMTNIYGIEPVVQHYGCLVDLLGRAGMLEDAKRVVREMPL 385

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI 248
           E +     ++++     G VE  +E      E+ +
Sbjct: 386 EPDSYVLGALLNACRVHGDVELGKETVECLAERSL 420


>gi|242032827|ref|XP_002463808.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
 gi|241917662|gb|EER90806.1| hypothetical protein SORBIDRAFT_01g006560 [Sorghum bicolor]
          Length = 803

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 149/503 (29%), Positives = 257/503 (51%), Gaps = 75/503 (14%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCG----------------------------- 94
           G K+H+ + K G+     ++  +L ++ KCG                             
Sbjct: 182 GRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARAVFERMKVRSESSWNAMVSLYTH 241

Query: 95  --ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV-RKLVSSGERPDGYTFSM 151
              +  A  MF+ + +R++ ++N +IAGY +NG  + +L    R L +S   PD +T + 
Sbjct: 242 QGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMALKFFSRMLTASSMEPDEFTVTS 301

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFD- 210
           +L A    R        +G+ +H+ IL+  +     +  AL+ +Y K G    AR + D 
Sbjct: 302 VLSACANLRM-----LKMGKQMHSYILRTGMPYSSQIMNALISTYAKSGSVETARRIMDK 356

Query: 211 -MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI------SIE 263
            ++ + NVI  T+++ G++  G  + A E+F     +D++ + AMI GY        ++E
Sbjct: 357 AVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNNRDVIAWTAMIVGYEQNGQNDEAME 416

Query: 264 TARKAL----------------------------EVHCQLIKNVFFEDVKLGSALVDMYA 295
             R  +                            ++HC+ I+++  + V + +A++ +YA
Sbjct: 417 LFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQIHCRAIRSLQEQSVSVSNAIITVYA 476

Query: 296 KCGKIDDARRVFDHM-QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           + G +  ARRVFD +  +K   TWTSMI    ++G   QA+ LF  M    V+P+ VT++
Sbjct: 477 RSGSVPLARRVFDQICWRKETVTWTSMIVALAQHGLGEQAIVLFEEMLRVGVKPDRVTYI 536

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
           G  SAC HAG +DKG+  +E M  ++ + P+M HYACMVDLL RAG L +A +F+  MP 
Sbjct: 537 GVFSACTHAGFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQRMPV 596

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
            P++ VW +LL++CR+  + ++A +AA ++  ++  D  GAY AL+N  +A G+W+    
Sbjct: 597 APDTVVWGSLLAACRVRKNADLAELAAEKLLSIDP-DNSGAYSALANVYSACGRWNDAAR 655

Query: 475 LREKMKLRGVLKDTGCSWVGTES 497
           + +  K + V K+TG SW   +S
Sbjct: 656 IWKLRKDKAVKKETGFSWTHVQS 678



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 104/467 (22%), Positives = 191/467 (40%), Gaps = 84/467 (17%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           LL ++ K G L  A  +F ++P+R   ++  M+ G  + G+  +++     +V  G  P 
Sbjct: 103 LLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGLAPS 162

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK-----CDVKADDVLYTALVDSYVKGG 200
            +  + +L  S+C  +     R +GR VH+ ++K     C   A+ VLY      Y K G
Sbjct: 163 QFMLTNVL--SSCAATEA---RGIGRKVHSFVIKLGLSSCVPVANSVLYM-----YGKCG 212

Query: 201 KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS- 259
               AR VF+ M  ++     +M+S +  QG ++ A  +F    E+ IV +NA+I GY+ 
Sbjct: 213 DAETARAVFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQ 272

Query: 260 ----------------------------------ISIETARKALEVHCQLIKNVFFEDVK 285
                                              ++   +   ++H  +++       +
Sbjct: 273 NGLDDMALKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRTGMPYSSQ 332

Query: 286 LGSALVDMYAKCGKIDDARR---------------------------------VFDHMQQ 312
           + +AL+  YAK G ++ ARR                                 VFD M  
Sbjct: 333 IMNALISTYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQAREVFDVMNN 392

Query: 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           ++V  WT+MI GY +NG  ++A+ELF  M     +PN  T    LSAC     +  G++I
Sbjct: 393 RDVIAWTAMIVGYEQNGQNDEAMELFRSMIRSGPEPNSHTLAAVLSACASLAYLGYGKQI 452

Query: 373 FESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHD 432
                R    +  +     ++ +  R+GS+  A +   ++  +  +  W +++ +   H 
Sbjct: 453 HCRAIRSLQ-EQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVALAQHG 511

Query: 433 DVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
             E A +   E+ ++        Y+ + +    AG  D      E+M
Sbjct: 512 LGEQAIVLFEEMLRVGVKPDRVTYIGVFSACTHAGFIDKGKRYYEQM 558



 Score = 78.6 bits (192), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 78/332 (23%), Positives = 143/332 (43%), Gaps = 43/332 (12%)

Query: 189 YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI 248
           + +L+  Y K G+ + AR+VF  M E++ +  T M+ G    G   DA + F   V + +
Sbjct: 100 WNSLLSMYAKSGRLADARVVFAQMPERDAVSWTVMVVGLNRAGRFWDAVKTFLDMVGEGL 159

Query: 249 VVYNAMIEGY--SISIETARK-ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARR 305
                M+     S +   AR    +VH  +IK      V + ++++ MY KCG  + AR 
Sbjct: 160 APSQFMLTNVLSSCAATEARGIGRKVHSFVIKLGLSSCVPVANSVLYMYGKCGDAETARA 219

Query: 306 V-------------------------------FDHMQQKNVFTWTSMIDGYGKNGNPNQA 334
           V                               F++M+++++ +W ++I GY +NG  + A
Sbjct: 220 VFERMKVRSESSWNAMVSLYTHQGRMDLALSMFENMEERSIVSWNAIIAGYNQNGLDDMA 279

Query: 335 LELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMV 393
           L+ F  M+    ++P+  T    LSAC +  ++  G+++   + R   M    +    ++
Sbjct: 280 LKFFSRMLTASSMEPDEFTVTSVLSACANLRMLKMGKQMHSYILRT-GMPYSSQIMNALI 338

Query: 394 DLLGRAGSLEQALKFVLE-MPEKPNSDVWAALLSS-CRLHDDVEMANIAANEIFKLNAND 451
               ++GS+E A + + + +    N   + ALL    +L D  +     A E+F +  N 
Sbjct: 339 STYAKSGSVETARRIMDKAVVADLNVISFTALLEGYVKLGDTKQ-----AREVFDVMNNR 393

Query: 452 RPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483
              A+ A+       G+ D   EL   M   G
Sbjct: 394 DVIAWTAMIVGYEQNGQNDEAMELFRSMIRSG 425



 Score = 55.1 bits (131), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 51/264 (19%), Positives = 115/264 (43%), Gaps = 44/264 (16%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLS-AYNYMIAGY 121
           YG +IH    ++  + + ++S  ++ ++ + G++  A ++FD++  R  +  +  MI   
Sbjct: 448 YGKQIHCRAIRSLQEQSVSVSNAIITVYARSGSVPLARRVFDQICWRKETVTWTSMIVAL 507

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            ++G  E+++ L  +++  G +PD  T+  +  A T                HA      
Sbjct: 508 AQHGLGEQAIVLFEEMLRVGVKPDRVTYIGVFSACT----------------HA------ 545

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE-IF 240
                         ++  GK  Y +++ +  +   +     M+      G + +A E I 
Sbjct: 546 -------------GFIDKGKRYYEQMLNEHGIVPEMSHYACMVDLLARAGLLTEAHEFIQ 592

Query: 241 RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           R  V  D VV+ +++   +  +       E+  + + ++  ++    SAL ++Y+ CG+ 
Sbjct: 593 RMPVAPDTVVWGSLLA--ACRVRKNADLAELAAEKLLSIDPDNSGAYSALANVYSACGRW 650

Query: 301 DDARRVFDHMQQKNV-----FTWT 319
           +DA R++   + K V     F+WT
Sbjct: 651 NDAARIWKLRKDKAVKKETGFSWT 674



 Score = 42.0 bits (97), Expect = 0.68,   Method: Compositional matrix adjust.
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 6/79 (7%)

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGK----IDDARRVFDHM--QQKNVFTWTSMIDG 324
           +H   +K        L + L+  YA+ G       +ARR+FD +   ++N FTW S++  
Sbjct: 47  IHAHAVKAGLLVSAYLCNNLLSYYARAGVGRGCFHEARRLFDDIPYARRNAFTWNSLLSM 106

Query: 325 YGKNGNPNQALELFCMMQE 343
           Y K+G    A  +F  M E
Sbjct: 107 YAKSGRLADARVVFAQMPE 125


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 165/553 (29%), Positives = 275/553 (49%), Gaps = 83/553 (15%)

Query: 12  FSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHI 71
           FS  H  H+ L   +Q     L   + +        LPSA++            ++H   
Sbjct: 89  FSKFHQFHHALSTFSQMLTRGLMPDNRV--------LPSAVKACAGLSALKPARQVHGIA 140

Query: 72  TKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESL 131
           + +G   ++ +   L+ +++KC  ++ A ++FD + +  + +++ ++A Y + G V+E+ 
Sbjct: 141 SVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAK 200

Query: 132 SLVRKLVSSGERPD---------GYTFS------------MILKA----STCCRSNVPLP 166
            L  ++  SG +P+         G+  S            M L+      T   S +P  
Sbjct: 201 RLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAV 260

Query: 167 RNL-----GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
            +L     G ++H  ++K  + +D  + +AL+D Y K   TS    VFD M   +V    
Sbjct: 261 GDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCN 320

Query: 222 SMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETAR--KALEV---- 271
           + I G    G VE +  +FR+     +E ++V + +MI   S   +  R  +ALE+    
Sbjct: 321 AFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCS---QNGRDMEALELFREM 377

Query: 272 -------------------------------HCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
                                          HC  ++     DV +GSAL+DMYAKCG+I
Sbjct: 378 QIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYAKCGRI 437

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
             +R  FD +  KN+  W ++I GY  +G   +A+E+F +MQ    +P+ ++F   LSAC
Sbjct: 438 QASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSAC 497

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
             +GL ++G   F SM   Y ++ ++EHYACMV LL RAG LEQA   +  MP  P++ V
Sbjct: 498 SQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVNPDACV 557

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W ALLSSCR+H++V +  +AA ++F+L  ++ PG Y+ LSN  A+ G W+ V  +R+ MK
Sbjct: 558 WGALLSSCRVHNNVSLGEVAAEKLFELEPSN-PGNYILLSNIYASKGMWNEVNRVRDMMK 616

Query: 481 LRGVLKDTGCSWV 493
            +G+ K+ GCSW+
Sbjct: 617 NKGLRKNPGCSWI 629



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 118/483 (24%), Positives = 201/483 (41%), Gaps = 92/483 (19%)

Query: 45  ATSLPSALQHYI----NSDTPFYGL--KIHAHITKTGVKPNTNISIKLLILHLKCGALKY 98
           A +L  ++QH I    NS T       + HAHI KTG+  +T+++ KLL  +        
Sbjct: 7   ALALLDSVQHTILNCLNSTTASLSQTRQAHAHILKTGLFNDTHLATKLLSHYANNMCFAD 66

Query: 99  AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
           A  + D +P+  + +++ +I  + K  Q   +LS   ++++ G  PD       +KA   
Sbjct: 67  ATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAG 126

Query: 159 CRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI 218
             +  P      R VH         +D  + ++LV  Y+K  +   A  VFD M E +V+
Sbjct: 127 LSALKP-----ARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVV 181

Query: 219 CSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSIS------------- 261
             +++++ +  QG V++A+ +F +     V+ +++ +N MI G++ S             
Sbjct: 182 SWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDM 241

Query: 262 ---------------------IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
                                +E     + +H  +IK     D  + SAL+DMY KC   
Sbjct: 242 HLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKCVSSALIDMYGKCSCT 301

Query: 301 DDARRVFDHMQ-----------------------------------QKNVFTWTSMIDGY 325
            +  +VFD M                                    + NV +WTSMI   
Sbjct: 302 SEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACC 361

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF-ESMERDYSMKP 384
            +NG   +ALELF  MQ   V+PN VT    L ACG+   +  G+     S+ R  S   
Sbjct: 362 SQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDV 421

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
            +   + ++D+  + G + QA +   +     N   W A+++   +H   +     A EI
Sbjct: 422 YVG--SALIDMYAKCGRI-QASRICFDGIPTKNLVCWNAVIAGYAMHGKAK----EAMEI 474

Query: 445 FKL 447
           F L
Sbjct: 475 FDL 477


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 144/437 (32%), Positives = 241/437 (55%), Gaps = 21/437 (4%)

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           L +H +  K G+     +   L+ ++ K G L  A  +F  +  R L  +N +I+   + 
Sbjct: 188 LVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQG 247

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
           G+V  ++ L   ++ SG  PD  T   +  A   C   +       + VH  + +     
Sbjct: 248 GKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELG-----AKSVHCYVRRRGWDV 302

Query: 185 DDVLY-TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D++   A+VD Y K  K   A+ VFD + +++V+   ++I+G+M  G   +A  I+   
Sbjct: 303 GDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIY--- 359

Query: 244 VEKDIVVYNAM--IEGYSISIETA-------RKALEVHCQLIKNVFFEDVKLGSALVDMY 294
              D+  +  +  I+G  +S+  A       ++ + +H   IK     DV + + L+D+Y
Sbjct: 360 --NDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNLDVYVTTCLIDLY 417

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           AKCGK+ +A  +F+HM +++   W ++I G G +G+  +AL LF  MQ+  ++P++VTF+
Sbjct: 418 AKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFV 477

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             L+AC HAGLVD+GR  F+ M+  Y + P  +HY CMVD+LGRAG L++A +F+  MP 
Sbjct: 478 SLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQSMPI 537

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
           KP+S VW ALL +CR+H +VEM  +A+  +F+L+  +  G YV +SN  A  GKWD V  
Sbjct: 538 KPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENV-GYYVLMSNMYAKIGKWDGVDA 596

Query: 475 LREKMKLRGVLKDTGCS 491
           +R  ++ + + K  G S
Sbjct: 597 VRSLVRRQNLQKTPGWS 613



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/377 (26%), Positives = 188/377 (49%), Gaps = 13/377 (3%)

Query: 61  PFYGLKIHAHITKTGV-KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIA 119
           P    ++HA   + G+  PN   S  L+  +L+ G +  A ++FDE+P+R + A+N M++
Sbjct: 82  PASAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLS 141

Query: 120 GYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           G  +N +  ++++L+ ++V  G   D  T S +L             R L  ++H   +K
Sbjct: 142 GLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGD-----RALALVMHVYAVK 196

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
             +  +  +  AL+D Y K G  + A  VF  M  ++++   S+IS     G V  A E+
Sbjct: 197 HGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANEQGGKVAAAVEL 256

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKAL---EVHCQLIKNVF-FEDVKLGSALVDMYA 295
           F   +E  +      +   + ++      L    VHC + +  +   D+  G+A+VDMYA
Sbjct: 257 FHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYVRRRGWDVGDIIAGNAMVDMYA 316

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC-MMQECCVQPNYVTFL 354
           K  KID A++VFD++  ++V +W ++I GY +NG  N+A+ ++  M     ++P   TF+
Sbjct: 317 KMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMHNHEGLKPIQGTFV 376

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             L A  + G + +G  +  ++     +   +    C++DL  + G L +A+     MP 
Sbjct: 377 SVLPAYSYLGGLQQGMRM-HALSIKTGLNLDVYVTTCLIDLYAKCGKLVEAMFLFEHMPR 435

Query: 415 KPNSDVWAALLSSCRLH 431
           + ++  W A+++   +H
Sbjct: 436 R-STGPWNAIIAGLGVH 451


>gi|2245038|emb|CAB10457.1| hypothetical protein [Arabidopsis thaliana]
 gi|7268435|emb|CAB80955.1| hypothetical protein [Arabidopsis thaliana]
          Length = 851

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 145/415 (34%), Positives = 240/415 (57%), Gaps = 40/415 (9%)

Query: 99  AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
           A Q+FDE+P+    +YN M++ Y++N   E++ S   +              M  K +  
Sbjct: 112 AHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDR--------------MPFKDAAS 157

Query: 159 CRSNVPLPRNLGRMVHA-QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
             + +      G M  A ++    ++ ++V + A++  Y++ G    A   F +   + V
Sbjct: 158 WNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGV 217

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRK-TVEKDIVVYNAMIEGYSISIETARKALEVHCQLI 276
           +  T+MI+G+M    VE AE +F+  TV K++V +NAMI GY   +E +R   E   +L 
Sbjct: 218 VAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGY---VENSRP--EDGLKLF 272

Query: 277 KNVFFEDVK----------LG---SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMID 323
           + +  E ++          LG   ++L+ MY KCG++ DA ++F+ M++K+V  W +MI 
Sbjct: 273 RAMLEEGIRPNSSGLSSALLGCTLTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMIS 332

Query: 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK 383
           GY ++GN ++AL LF  M +  ++P+++TF+  L AC HAGLV+ G   FESM RDY ++
Sbjct: 333 GYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKVE 392

Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANE 443
           P+ +HY CMVDLLGRAG LE+ALK +  MP +P++ V+  LL +CR+H +VE+A  AA +
Sbjct: 393 PQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFGTLLGACRVHKNVELAEFAAEK 452

Query: 444 IFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDT-----GCSWV 493
           + +LN+ +  G YV L+N  A+  +W+ V  +R++MK   V+K       G SW+
Sbjct: 453 LLQLNSQNAAG-YVQLANIYASKNRWEDVARVRKRMKESNVVKVERVKVPGYSWI 506



 Score = 66.2 bits (160), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 85/162 (52%), Gaps = 17/162 (10%)

Query: 55  YINSDTPFYGLKIHAHITKTGVKPNTN---------ISIKLLILHLKCGALKYAGQMFDE 105
           Y+ +  P  GLK+   + + G++PN++             L+ ++ KCG L  A ++F+ 
Sbjct: 259 YVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLGCTLTSLISMYCKCGELGDAWKLFEV 318

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           + ++ + A+N MI+GY ++G  +++L L R+++ +  RPD  TF  +L A  C  + +  
Sbjct: 319 MKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLA--CNHAGLV- 375

Query: 166 PRNLGRMVHAQILKCDVKADDV--LYTALVDSYVKGGKTSYA 205
             N+G M + + +  D K +     YT +VD   + GK   A
Sbjct: 376 --NIG-MAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEA 414



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 67/289 (23%), Positives = 115/289 (39%), Gaps = 65/289 (22%)

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149
           +++CG L+ A   F   P R + A+  MI GY+K  +VE + ++ + +            
Sbjct: 196 YIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMT----------- 244

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVF 209
                                           V  + V + A++  YV+  +      +F
Sbjct: 245 --------------------------------VNKNLVTWNAMISGYVENSRPEDGLKLF 272

Query: 210 DMMLEKNVI------------CS-TSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE 256
             MLE+ +             C+ TS+IS +   G + DA ++F    +KD+V +NAMI 
Sbjct: 273 RAMLEEGIRPNSSGLSSALLGCTLTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMIS 332

Query: 257 GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF 316
           GY+     A KAL +  ++I N    D     A++      G ++     F+ M +    
Sbjct: 333 GYA-QHGNADKALCLFREMIDNKIRPDWITFVAVLLACNHAGLVNIGMAYFESMVRDYKV 391

Query: 317 T-----WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
                 +T M+D  G+ G   +AL+L   M     +P+   F   L AC
Sbjct: 392 EPQPDHYTCMVDLLGRAGKLEEALKLIRSMP---FRPHAAVFGTLLGAC 437



 Score = 47.4 bits (111), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 89/213 (41%), Gaps = 22/213 (10%)

Query: 290 LVDMYAKC---GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
           L  + A+C   G ID A RVF  M+ KN  TW S++ G  K  +P++ +E   +  E   
Sbjct: 64  LNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISK--DPSRMMEAHQLFDE-IP 120

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESME-RDYSMKPKMEHYACMVDLLGRAGSLEQA 405
           +P+  ++   LS        +K +  F+ M  +D +       +  M+    R G +E+A
Sbjct: 121 EPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAA------SWNTMITGYARRGEMEKA 174

Query: 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465
            +    M EK N   W A++S      D+E     A+  FK+       A+ A+      
Sbjct: 175 RELFYSMMEK-NEVSWNAMISGYIECGDLE----KASHFFKVAPVRGVVAWTAMITGYMK 229

Query: 466 AGKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498
           A K     EL E M     +     +W    SG
Sbjct: 230 AKK----VELAEAMFKDMTVNKNLVTWNAMISG 258


>gi|334186622|ref|NP_680717.2| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
 gi|357529479|sp|Q9M4P3.3|PP316_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g16835, mitochondrial; AltName: Full=Protein DYW10;
           Flags: Precursor
 gi|332658412|gb|AEE83812.1| tetratricopeptide repeat domain-containing protein [Arabidopsis
           thaliana]
          Length = 656

 Score =  256 bits (653), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 145/431 (33%), Positives = 238/431 (55%), Gaps = 51/431 (11%)

Query: 99  AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
           A Q+FDE+P+    +YN M++ Y++N   E++ S   +              M  K +  
Sbjct: 112 AHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDR--------------MPFKDAAS 157

Query: 159 CRSNVPLPRNLGRMVHA-QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
             + +      G M  A ++    ++ ++V + A++  Y++ G    A   F +   + V
Sbjct: 158 WNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGV 217

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRK-TVEKDIVVYNAMIEGY------SISIETARKALE 270
           +  T+MI+G+M    VE AE +F+  TV K++V +NAMI GY         ++  R  LE
Sbjct: 218 VAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLE 277

Query: 271 ----------------------------VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
                                       +H  + K+    DV   ++L+ MY KCG++ D
Sbjct: 278 EGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGD 337

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           A ++F+ M++K+V  W +MI GY ++GN ++AL LF  M +  ++P+++TF+  L AC H
Sbjct: 338 AWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNH 397

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
           AGLV+ G   FESM RDY ++P+ +HY CMVDLLGRAG LE+ALK +  MP +P++ V+ 
Sbjct: 398 AGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFG 457

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
            LL +CR+H +VE+A  AA ++ +LN+ +  G YV L+N  A+  +W+ V  +R++MK  
Sbjct: 458 TLLGACRVHKNVELAEFAAEKLLQLNSQNAAG-YVQLANIYASKNRWEDVARVRKRMKES 516

Query: 483 GVLKDTGCSWV 493
            V+K  G SW+
Sbjct: 517 NVVKVPGYSWI 527



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 77/277 (27%), Positives = 130/277 (46%), Gaps = 9/277 (3%)

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVL-YTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
           + + ++  RM+ A  L  ++   D   Y  ++  YV+      A+  FD M  K+     
Sbjct: 100 IGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWN 159

Query: 222 SMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFF 281
           +MI+G+  +G +E A E+F   +EK+ V +NAMI GY   IE     LE      K    
Sbjct: 160 TMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGY---IECG--DLEKASHFFKVAPV 214

Query: 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             V   +A++  Y K  K++ A  +F  M   KN+ TW +MI GY +N  P   L+LF  
Sbjct: 215 RGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRA 274

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           M E  ++PN      AL  C     +  GR+I + + +  ++   +     ++ +  + G
Sbjct: 275 MLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKS-TLCNDVTALTSLISMYCKCG 333

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
            L  A K + E+ +K +   W A++S    H + + A
Sbjct: 334 ELGDAWK-LFEVMKKKDVVAWNAMISGYAQHGNADKA 369



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 17/173 (9%)

Query: 35  NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           N   LS+ L   S  SALQ          G +IH  ++K+ +  +      L+ ++ KCG
Sbjct: 283 NSSGLSSALLGCSELSALQ---------LGRQIHQIVSKSTLCNDVTALTSLISMYCKCG 333

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
            L  A ++F+ + ++ + A+N MI+GY ++G  +++L L R+++ +  RPD  TF  +L 
Sbjct: 334 ELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLL 393

Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV--LYTALVDSYVKGGKTSYA 205
           A  C  + +    N+G M + + +  D K +     YT +VD   + GK   A
Sbjct: 394 A--CNHAGLV---NIG-MAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEA 440



 Score = 46.2 bits (108), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 56/213 (26%), Positives = 89/213 (41%), Gaps = 22/213 (10%)

Query: 290 LVDMYAKC---GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
           L  + A+C   G ID A RVF  M+ KN  TW S++ G  K  +P++ +E   +  E   
Sbjct: 64  LNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISK--DPSRMMEAHQLFDE-IP 120

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESME-RDYSMKPKMEHYACMVDLLGRAGSLEQA 405
           +P+  ++   LS        +K +  F+ M  +D +       +  M+    R G +E+A
Sbjct: 121 EPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAA------SWNTMITGYARRGEMEKA 174

Query: 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465
            +    M EK N   W A++S      D+E     A+  FK+       A+ A+      
Sbjct: 175 RELFYSMMEK-NEVSWNAMISGYIECGDLE----KASHFFKVAPVRGVVAWTAMITGYMK 229

Query: 466 AGKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498
           A K     EL E M     +     +W    SG
Sbjct: 230 AKK----VELAEAMFKDMTVNKNLVTWNAMISG 258


>gi|294463969|gb|ADE77505.1| unknown [Picea sitchensis]
          Length = 514

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 144/391 (36%), Positives = 218/391 (55%), Gaps = 40/391 (10%)

Query: 137 LVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196
           +V  G +P+ +T S ++KA   C S   L +  G+  H  I+K   ++D V+ TALV  Y
Sbjct: 1   MVGKGVKPNQFTLSTVVKA---CASIASLEQ--GKQAHNYIIKMGFESDVVVQTALVHMY 55

Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE 256
            + G    A  VFD M E++     +MI+G      ++ A ++F +  E+D+V + A+I 
Sbjct: 56  ARCGSLEDAGHVFDKMSERSTRTWNAMITGHAQNRDMKKALKLFYEMSERDVVSWTAVIA 115

Query: 257 GYS------------------------------ISIETARKALEV----HCQLIKNVFFE 282
           GY+                              +S      ALE+    H  ++++ F  
Sbjct: 116 GYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSVLSACADLAALELGRQFHAYVVQSGFAL 175

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           D+ +GSALVDMYAK G ++DA +VFD M Q+N  +W S+I G  ++G  N A+ LF  M 
Sbjct: 176 DIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQHGRGNDAVLLFEQML 235

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
           +  ++PN ++F+G LSAC H GLV++GR  F  M ++Y + P + HY CM+DLLGRAG L
Sbjct: 236 QAGIKPNEISFVGVLSACSHTGLVNEGRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCL 295

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
           ++A  F+  MP +P+  VW ALL +CR+H + E+A   A  +  +      G YV LSN 
Sbjct: 296 DEAENFINGMPVEPDVSVWGALLGACRIHGNTELAKRIAEHLLGMEVQ-IAGIYVLLSNI 354

Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            AAAG+WD   ++R+ MK RGV+K  G SW+
Sbjct: 355 YAAAGQWDDAAKVRKLMKDRGVMKQPGYSWI 385



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 75/309 (24%), Positives = 137/309 (44%), Gaps = 45/309 (14%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYM------ 117
           G + H +I K G + +  +   L+ ++ +CG+L+ AG +FD++ +R+   +N M      
Sbjct: 29  GKQAHNYIIKMGFESDVVVQTALVHMYARCGSLEDAGHVFDKMSERSTRTWNAMITGHAQ 88

Query: 118 -------------------------IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
                                    IAGY +NG  +ESL++  ++  +G + D +    +
Sbjct: 89  NRDMKKALKLFYEMSERDVVSWTAVIAGYAQNGYGDESLNVFNQMRKTGMKSDRFIMGSV 148

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L A   C     L   LGR  HA +++     D V+ +ALVD Y K G    A  VFD M
Sbjct: 149 LSA---CADLAALE--LGRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKM 203

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSIS--IETAR 266
            ++N +   S+I+G    G   DA  +F + ++  I    + +  ++   S +  +   R
Sbjct: 204 PQRNEVSWNSIITGCAQHGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACSHTGLVNEGR 263

Query: 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGY 325
               +  Q    V   DV   + ++D+  + G +D+A    + M  + +V  W +++   
Sbjct: 264 GYFNLMTQNYGIV--PDVSHYTCMIDLLGRAGCLDEAENFINGMPVEPDVSVWGALLGAC 321

Query: 326 GKNGNPNQA 334
             +GN   A
Sbjct: 322 RIHGNTELA 330



 Score = 61.6 bits (148), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 55/264 (20%), Positives = 121/264 (45%), Gaps = 49/264 (18%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G + HA++ ++G   +  +   L+ ++ K G+++ A Q+FD++PQR   ++N +I G  +
Sbjct: 161 GRQFHAYVVQSGFALDIVVGSALVDMYAKSGSMEDACQVFDKMPQRNEVSWNSIITGCAQ 220

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G+  +++ L  +++ +G +P+  +F  +L A +                          
Sbjct: 221 HGRGNDAVLLFEQMLQAGIKPNEISFVGVLSACS-------------------------- 254

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
                +T LV+     G+  +  +  +  +  +V   T MI      G +++AE      
Sbjct: 255 -----HTGLVNE----GRGYFNLMTQNYGIVPDVSHYTCMIDLLGRAGCLDEAENFINGM 305

Query: 244 -VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALV---DMYAKCGK 299
            VE D+ V+ A++    I   T     E+  ++ +++   +V++    V   ++YA  G+
Sbjct: 306 PVEPDVSVWGALLGACRIHGNT-----ELAKRIAEHLLGMEVQIAGIYVLLSNIYAAAGQ 360

Query: 300 IDDARRVFDHMQQKNV-----FTW 318
            DDA +V   M+ + V     ++W
Sbjct: 361 WDDAAKVRKLMKDRGVMKQPGYSW 384


>gi|110741623|dbj|BAE98759.1| hypothetical protein [Arabidopsis thaliana]
          Length = 504

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 153/456 (33%), Positives = 240/456 (52%), Gaps = 46/456 (10%)

Query: 73  KTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLS 132
           +TGV    ++  +LL++      L YA ++FD         YN +I  Y  + Q  ES+ 
Sbjct: 6   RTGVDETKDLLQRLLLI----PNLVYARKLFDHHQNSCTFLYNKLIQAYYVHHQPHESIV 61

Query: 133 LVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTAL 192
           L   L   G RP  +TF+ I  AS    S  PL     R++H+Q  +   ++D    T L
Sbjct: 62  LYNLLSFDGLRPSHHTFNFIFAASASFSSARPL-----RLLHSQFFRSGFESDSFCCTTL 116

Query: 193 VDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN 252
           + +Y K G    AR VFD M +++V    +MI+G+  +G ++ A E+F     K++  + 
Sbjct: 117 ITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPRKNVTSWT 176

Query: 253 AMIEGYS------------ISIETARKALEVHCQLI-----------------------K 277
            +I G+S            + +E  +     H  ++                       +
Sbjct: 177 TVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRRLEGYARE 236

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM-QQKNVFTWTSMIDGYGKNGNPNQALE 336
           N FF+++ + +A ++MY+KCG ID A+R+F+ +  Q+N+ +W SMI     +G  ++AL 
Sbjct: 237 NGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHGKHDEALT 296

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           LF  M     +P+ VTF+G L AC H G+V KG+E+F+SME  + + PK+EHY CM+DLL
Sbjct: 297 LFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHYGCMIDLL 356

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456
           GR G L++A   +  MP KP++ VW  LL +C  H +VE+A IA+  +FKL   + PG  
Sbjct: 357 GRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALFKLEPTN-PGNC 415

Query: 457 VALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSW 492
           V +SN  AA  KWD V  +R+ MK   + K  G S+
Sbjct: 416 VIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSY 451



 Score = 56.2 bits (134), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 65/304 (21%), Positives = 128/304 (42%), Gaps = 47/304 (15%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +H+   ++G + ++     L+  + K GAL  A ++FDE+ +R +  +N MI GY + G 
Sbjct: 97  LHSQFFRSGFESDSFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGD 156

Query: 127 VEESLSLVRKL----------VSSGERPDGYTFSMILKASTCCRSN-------------V 163
           ++ ++ L   +          V SG   +G  +S  LK   C   +             +
Sbjct: 157 MKAAMELFDSMPRKNVTSWTTVISGFSQNG-NYSEALKMFLCMEKDKSVKPNHITVVSVL 215

Query: 164 PLPRNLGRMVHAQILKCDVKAD---DVLYT--ALVDSYVKGGKTSYARIVFDMMLEKNVI 218
           P   NLG +   + L+   + +   D +Y   A ++ Y K G    A+ +F+ +  +  +
Sbjct: 216 PACANLGELEIGRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNL 275

Query: 219 CS-TSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHC 273
           CS  SMI    + G  ++A  +F    R+  + D V +  ++      +      + V  
Sbjct: 276 CSWNSMIGSLATHGKHDEALTLFAQMLREGEKPDAVTFVGLL------LACVHGGMVVKG 329

Query: 274 QLIKNVFFEDVKLGSAL------VDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMIDGYG 326
           Q +     E  K+   L      +D+  + GK+ +A  +   M  K +   W +++    
Sbjct: 330 QELFKSMEEVHKISPKLEHYGCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACS 389

Query: 327 KNGN 330
            +GN
Sbjct: 390 FHGN 393



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 1/93 (1%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP-QRTLSAYNYMIAGYL 122
           G ++  +  + G   N  +    + ++ KCG +  A ++F+EL  QR L ++N MI    
Sbjct: 227 GRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLA 286

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
            +G+ +E+L+L  +++  GE+PD  TF  +L A
Sbjct: 287 THGKHDEALTLFAQMLREGEKPDAVTFVGLLLA 319


>gi|414588833|tpg|DAA39404.1| TPA: hypothetical protein ZEAMMB73_882385 [Zea mays]
          Length = 668

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 147/441 (33%), Positives = 254/441 (57%), Gaps = 19/441 (4%)

Query: 64  GLKIHAHITKTGVKP-NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G ++H    ++G+ P +   +  LL ++  C     A + FDE+P         M +G +
Sbjct: 107 GRQLHLLALRSGLFPSDAYCASALLHMYHHCFRPLDARRAFDEIPTPNPVIVTAMASGCM 166

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +N  V  +LS+ R +V+SG    G         +    + VP  R +   +HA + K  +
Sbjct: 167 RNNLVYTTLSIFRSMVASGSA--GVVDEAAALVALSASARVP-DRGITGGIHALVSKIGL 223

Query: 183 KADDVLYTALVDSYVKGG--KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
                +   ++D+Y KGG      AR +FDMM +++V+   +MI+ +   G   +A  ++
Sbjct: 224 DGQTGVANTIIDAYAKGGGHDLGAARKLFDMM-DRDVVSWNTMIALYAQNGLSTEALGLY 282

Query: 241 RKT------VEKDIVVYNAMIEG--YSISIETARKALEVHCQLIKNVFFEDVKLGSALVD 292
            K       V  + V  +A++    ++ +I+T ++   +H Q+++    ++V +G+++VD
Sbjct: 283 SKMLIVGGDVRCNAVTLSAVLLACAHAGAIQTGKR---IHNQVVRMGLEDNVYVGTSVVD 339

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           MY+KCGK++ A + F  ++ KN+ +W++MI GYG +G   +AL +F  M++  ++PNY+T
Sbjct: 340 MYSKCGKVEMAWKAFQKIKGKNILSWSAMIAGYGMHGYGQEALHVFTDMRKSGLKPNYIT 399

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
           F+  L+AC HAGL+ +GR  + +M+ ++ ++P +EHY CMVDLLGRAG L++A   + EM
Sbjct: 400 FITVLAACSHAGLLSEGRYWYNTMKTEFGIEPGVEHYGCMVDLLGRAGCLDEAYGLIKEM 459

Query: 413 PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSV 472
             KP++ +W ALLS+CR++ +VE+A I A  +F+L+A +  G YV LSN  A AG W  V
Sbjct: 460 KVKPDAALWGALLSACRIYKNVELAKICAERLFELDATNS-GYYVLLSNIYAEAGMWKEV 518

Query: 473 TELREKMKLRGVLKDTGCSWV 493
             +R  +K RG+ K  G S V
Sbjct: 519 ERMRVLVKTRGIEKPPGYSSV 539


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 150/474 (31%), Positives = 253/474 (53%), Gaps = 32/474 (6%)

Query: 35  NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           N  + S  L A  L +AL+          GL+IH    K G +    +   L+ ++ KCG
Sbjct: 106 NEFTFSTNLKACGLLNALEK---------GLQIHGFCLKIGFEMMVEVGNSLVDMYSKCG 156

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG--ERPDGYTFSMI 152
            +  A ++F  +  R+L ++N MIAG++  G   ++L     +  +   ERPD +T + +
Sbjct: 157 RINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSL 216

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVK--ADDVLYTALVDSYVKGGKTSYARIVFD 210
           LKA  C  + +      G+ +H  +++      +   +  +LVD YVK G    AR  FD
Sbjct: 217 LKA--CSSTGMIYA---GKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFD 271

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS--------I 262
            + EK +I  +S+I G+  +G   +A  +F++  E      N+ I+ +++S         
Sbjct: 272 QIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQE-----LNSQIDSFALSSIIGVFADF 326

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
              R+  ++    +K     +  + +++VDMY KCG +D+A + F  MQ K+V +WT +I
Sbjct: 327 ALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVI 386

Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382
            GYGK+G   +++ +F  M    ++P+ V +L  LSAC H+G++ +G E+F  +   + +
Sbjct: 387 TGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGI 446

Query: 383 KPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAAN 442
           KP++EHYAC+VDLLGRAG L++A   +  MP KPN  +W  LLS CR+H D+E+      
Sbjct: 447 KPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGK 506

Query: 443 EIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
            + +++A + P  YV +SN    AG W+     RE   ++G+ K+ G SWV  E
Sbjct: 507 ILLRIDAKN-PANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIE 559



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 105/426 (24%), Positives = 206/426 (48%), Gaps = 20/426 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H ++ K+G   N   S  L+ ++ KC     A ++FD +P+R + +++ +++G++ 
Sbjct: 25  GGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVL 84

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG ++ SLSL  ++   G  P+ +TFS  LKA   C     L + L   +H   LK   +
Sbjct: 85  NGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKA---CGLLNALEKGL--QIHGFCLKIGFE 139

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               +  +LVD Y K G+ + A  VF  ++++++I   +MI+GF+  G+   A + F   
Sbjct: 140 MMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMM 199

Query: 244 VEKDI------VVYNAMIEGYSISIETARKALEVHCQLIKNVFF--EDVKLGSALVDMYA 295
            E +I          ++++  S S        ++H  L+++ F       +  +LVD+Y 
Sbjct: 200 QEANIKERPDEFTLTSLLKACS-STGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYV 258

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KCG +  AR+ FD +++K + +W+S+I GY + G   +A+ LF  +QE   Q +      
Sbjct: 259 KCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSS 318

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            +       L+ +G+++ +++        +      +VD+  + G +++A K   EM  K
Sbjct: 319 IIGVFADFALLRQGKQM-QALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLK 377

Query: 416 PNSDV--WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473
              DV  W  +++    H   + +     E+ + N       Y+A+ +  + +G      
Sbjct: 378 ---DVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGE 434

Query: 474 ELREKM 479
           EL  K+
Sbjct: 435 ELFSKL 440


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 149/441 (33%), Positives = 239/441 (54%), Gaps = 42/441 (9%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           L+ +++KCGA+  A ++FDE   + L  YN +++ Y++ G   E L+++ +++  G RPD
Sbjct: 281 LVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPD 340

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
             T  M+   S C   +     + G+  H  +L+  ++  D +  A+++ Y+K GK   A
Sbjct: 341 RIT--MLSAVSACSELD---DVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMA 395

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETA 265
             VFD ML K  +   S+I+GF+  G +E A +IF    + D+V +N MI G  +     
Sbjct: 396 CRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMI-GALVQESMF 454

Query: 266 RKALE-----------------------------------VHCQLIKNVFFEDVKLGSAL 290
           ++A+E                                   +H  + K     D+ LG+AL
Sbjct: 455 KEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDIHFDMHLGTAL 514

Query: 291 VDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY 350
           VDM+A+CG    A +VF+ M +++V  WT+ I      GN   A+ELF  M +  ++P+ 
Sbjct: 515 VDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDG 574

Query: 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410
           V F+  L+A  H GLV++G  IF SM+  Y + P+  HY CMVDLLGRAG L +AL  + 
Sbjct: 575 VVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLIN 634

Query: 411 EMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
            M  +PN  +W +LL++CR+H +V++A  AA  I +L+  +R G +V LSN  A+AG+WD
Sbjct: 635 SMQMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELDP-ERTGIHVLLSNIYASAGRWD 693

Query: 471 SVTELREKMKLRGVLKDTGCS 491
            V ++R  +K +G  K  G S
Sbjct: 694 DVAKVRLHLKEKGAHKMPGSS 714



 Score =  139 bits (350), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 116/480 (24%), Positives = 216/480 (45%), Gaps = 62/480 (12%)

Query: 23  VPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNI 82
           VP N TFP            L+A +  +AL           G ++H  I K G + +  +
Sbjct: 136 VPDNFTFP----------FVLSACTKSAALTE---------GFQVHGAIVKMGFERDMFV 176

Query: 83  SIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE 142
              L+  + +CG +    ++FD++ +R + ++  +I GY K G  +E++SL  ++V  G 
Sbjct: 177 ENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGI 236

Query: 143 RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKT 202
           RP+  T  M+   S C +        LG  V   I + +++ + ++  ALVD Y+K G  
Sbjct: 237 RPNSVT--MVGVISACAKLQ---DLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGAI 291

Query: 203 SYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIEGY 258
             AR +FD  ++KN++   +++S ++ QG   +      E+ +     D +   + +   
Sbjct: 292 DKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSAC 351

Query: 259 SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTW 318
           S  ++        H  +++N       + +A+++MY KCGK + A RVFD M  K   +W
Sbjct: 352 S-ELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSW 410

Query: 319 TSMIDGYGKNGN-----------PN--------------------QALELFCMMQECCVQ 347
            S+I G+ +NG+           P+                    +A+ELF +MQ   + 
Sbjct: 411 NSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGIT 470

Query: 348 PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALK 407
            + VT +G  SACG+ G +D  + I   +++   +   M     +VD+  R G  + A++
Sbjct: 471 ADKVTMVGVASACGYLGALDLAKWIHGYIKKK-DIHFDMHLGTALVDMFARCGDPQSAMQ 529

Query: 408 FVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG 467
              +M ++  S  W A + +  +  +   A    +E+ +         +VAL   L+  G
Sbjct: 530 VFNKMVKRDVS-AWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGG 588



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 110/438 (25%), Positives = 200/438 (45%), Gaps = 32/438 (7%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCG---ALKYAGQMFDELPQR-----TLSAYNYM 117
           ++H+ ITK G+  +      L+    + G   +L+YA +  +   +      T   ++ +
Sbjct: 51  QLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFSSL 110

Query: 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQI 177
           I G+   G   +++ + R+L+  G  PD +TF  +L A   C  +  L    G  VH  I
Sbjct: 111 IRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSA---CTKSAALTE--GFQVHGAI 165

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
           +K   + D  +  +L+  Y + G+    R VFD M E+NV+  TS+I G+  +G  ++A 
Sbjct: 166 VKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAV 225

Query: 238 EIFRKTVEKDIVVYNAMIEGYSISIETARKALEVH---CQLIKNVFFE-DVKLGSALVDM 293
            +F + VE  I   +  + G  IS     + L++    C  I  +  E +  + +ALVDM
Sbjct: 226 SLFFEMVEVGIRPNSVTMVGV-ISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDM 284

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           Y KCG ID AR++FD    KN+  + +++  Y + G   + L +   M +   +P+ +T 
Sbjct: 285 YMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITM 344

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY--AC--MVDLLGRAGSLEQALKFV 409
           L A+SAC     V  G+         Y ++  +E +   C  ++++  + G  E A +  
Sbjct: 345 LSAVSACSELDDVSCGKWC-----HGYVLRNGLEGWDNVCNAIINMYMKCGKQEMACRVF 399

Query: 410 LEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKW 469
             M  K     W +L++    + D+E    +A +IF    +    ++  +   L     +
Sbjct: 400 DRMLNKTRVS-WNSLIAGFVRNGDME----SAWKIFSAMPDSDLVSWNTMIGALVQESMF 454

Query: 470 DSVTELREKMKLRGVLKD 487
               EL   M+  G+  D
Sbjct: 455 KEAIELFRVMQSEGITAD 472



 Score =  105 bits (263), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 78/258 (30%), Positives = 131/258 (50%), Gaps = 16/258 (6%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGG---KTSYARIVFDMMLEKNVICST-----S 222
           + +H+QI K  +    +  T L+ S  + G      YA+   ++ +E N I  T     S
Sbjct: 50  KQLHSQITKNGLNHHPLSLTNLISSCTEMGTFESLEYAQKALELFIEDNGIMGTHYMFSS 109

Query: 223 MISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKN 278
           +I GF + G    A  +FR+ +    V  N     + +S  T   AL    +VH  ++K 
Sbjct: 110 LIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFP-FVLSACTKSAALTEGFQVHGAIVKM 168

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
            F  D+ + ++L+  Y +CG+ID  RRVFD M ++NV +WTS+I GY K G   +A+ LF
Sbjct: 169 GFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLF 228

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVDLLG 397
             M E  ++PN VT +G +SAC     +  G ++   + E +  +   M +   +VD+  
Sbjct: 229 FEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVN--ALVDMYM 286

Query: 398 RAGSLEQALKFVLEMPEK 415
           + G++++A K   E  +K
Sbjct: 287 KCGAIDKARKIFDECVDK 304


>gi|357518907|ref|XP_003629742.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523764|gb|AET04218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 616

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 152/478 (31%), Positives = 249/478 (52%), Gaps = 58/478 (12%)

Query: 66  KIHAHITKTGVKPNTNISIKLL-----ILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120
           ++HAHI +  +  ++ +   LL     + H+      Y   +F ++       Y+ +I  
Sbjct: 29  QLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHT--YPHLLFSQVHSPNPFLYSALIRA 86

Query: 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRN--LGRMVHAQIL 178
           Y +NG    S+ L   ++++   P  +TFS +            L +N  LG  +H    
Sbjct: 87  YARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFS----------LLKNPSLGSQLHLHAF 136

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
                 D  +   ++  YVK G    AR VFD M  ++V+  T +I  +   G ++ A E
Sbjct: 137 LFGFVNDLYVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACE 196

Query: 239 IFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFED--------------- 283
           +F     KD+V + +M+ GYS +    +KAL+   ++ +     D               
Sbjct: 197 LFVGLPVKDMVAWTSMVTGYSQN-AMPKKALQFFRKMREAGVVTDEITLVGAISACAQLG 255

Query: 284 ----------------------VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
                                 V +GSAL+DMY+KCG +++A  VF  M++ NVF+++SM
Sbjct: 256 VSGYADWIREIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSM 315

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           I G+  +G    A++LF  M E  ++PN+VTF+G  +AC HAG+V++G+++F +M+  Y 
Sbjct: 316 IVGFAVHGRARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYG 375

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441
           + P  +HYACM DLLGRAG LE+AL+ V  MP +PN  VW ALL +  +H + ++A IA+
Sbjct: 376 VSPTADHYACMADLLGRAGHLEKALQLVQTMPMEPNGGVWGALLGASHIHGNPDVAEIAS 435

Query: 442 NEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
             +F+L   D  G Y+ LS T A A KWD V+ +R+ M+ + + K+ GCSWV  ++G+
Sbjct: 436 RSLFELEP-DNLGNYLLLSKTYALAAKWDDVSRVRKLMREKQLRKNPGCSWVEAKNGI 492



 Score = 84.0 bits (206), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/388 (21%), Positives = 150/388 (38%), Gaps = 78/388 (20%)

Query: 168 NLGRMVHAQILKCDVKADDVLYTAL---VDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
           N  + +HA I + ++     + T L   + +       +Y  ++F  +   N    +++I
Sbjct: 25  NHAKQLHAHIYRNNLHQSSYVITNLLRFITTLPHIPVHTYPHLLFSQVHSPNPFLYSALI 84

Query: 225 SGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDV 284
             +   G    +  ++   +  ++   +         ++      ++H       F  D+
Sbjct: 85  RAYARNGPFHHSIRLYTSMLNNNVSPVSFTFSALFSLLKNPSLGSQLHLHAFLFGFVNDL 144

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT--------------------------- 317
            +G+ ++ MY K G +D AR+VFD M  ++V T                           
Sbjct: 145 YVGNTIIHMYVKFGVLDCARKVFDEMPHRDVVTWTELIVAYARSGDMDSACELFVGLPVK 204

Query: 318 ----WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC---GHAGLVDKGR 370
               WTSM+ GY +N  P +AL+ F  M+E  V  + +T +GA+SAC   G +G  D  R
Sbjct: 205 DMVAWTSMVTGYSQNAMPKKALQFFRKMREAGVVTDEITLVGAISACAQLGVSGYADWIR 264

Query: 371 EIFES------------------------MERDYSMKPKMEH-----YACMVDLLGRAGS 401
           EI ES                        +E  Y++   M+      Y+ M+      G 
Sbjct: 265 EIAESSRFGSGSNVFVGSALIDMYSKCGNVEEAYNVFKGMKEMNVFSYSSMIVGFAVHGR 324

Query: 402 LEQALKFVLEMPE---KPNSDVWAALLSSCRLHDDVEMANI---AANEIFKLNANDRPGA 455
              A+K   EM E   KPN   +  L ++C     VE       A  E + ++    P A
Sbjct: 325 ARSAIKLFYEMLENGIKPNHVTFVGLFTACSHAGMVEQGQQLFGAMKECYGVS----PTA 380

Query: 456 --YVALSNTLAAAGKWDSVTELREKMKL 481
             Y  +++ L  AG  +   +L + M +
Sbjct: 381 DHYACMADLLGRAGHLEKALQLVQTMPM 408


>gi|357113684|ref|XP_003558631.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 802

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 157/527 (29%), Positives = 275/527 (52%), Gaps = 77/527 (14%)

Query: 37  DSLSNPLTAT--SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           D +++ L+ T  +L + L     ++    G K+H+ + K G+     ++  +L ++ KCG
Sbjct: 152 DMVTDGLSPTQFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCG 211

Query: 95  ALKYAGQMFDELPQRTLSAYNYM-------------------------------IAGYLK 123
             + A  +F+ +P+R++S++N M                               IAGY +
Sbjct: 212 DAETARAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQ 271

Query: 124 NGQVEESLSLVRKLVS-SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           NG   ++L    +++S S   PD +T + +L A     +N+ +  ++G+ VHA IL+  +
Sbjct: 272 NGLNAKALWFFSRMLSYSTMAPDEFTITSVLSAC----ANLGMV-SIGKQVHAYILRSRM 326

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFD--MMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
                +  AL+  Y K G    AR V    +M + NVI  T+++ G++  G ++ A E+F
Sbjct: 327 PYIGQVTNALISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMF 386

Query: 241 RKTVEKDIVVYNAMIEGYS------------------------------ISIETARKALE 270
                +D+V + AMI GY                               +S+  +   LE
Sbjct: 387 DVMSNRDVVAWTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLE 446

Query: 271 ----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGY 325
               +HC+ I+++  +   + +++V MYA+ G +  ARRVFD +  +K   TWTSMI   
Sbjct: 447 YGKQIHCKAIRSLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVAL 506

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
            ++G    A+ LF  M    V+P+ +TF+G LSAC H G VD+G+  F+ ++  + + P+
Sbjct: 507 AQHGLGEDAVGLFEEMLRVGVKPDRITFVGVLSACTHVGFVDEGKRYFQQLQDKHGIVPE 566

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIF 445
           M HYACMVDLL RAG   +A +F+ +MP +P++  W +LLS+CR+H + ++A +AA ++ 
Sbjct: 567 MSHYACMVDLLARAGLFSEAQEFIQQMPVEPDAIAWGSLLSACRVHKNADLAELAAEKLL 626

Query: 446 KLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSW 492
            ++  +  GAY ALSN  +A G+W+   ++ ++ K + V K+TG SW
Sbjct: 627 SIDPGN-SGAYSALSNVYSACGRWNDAAKIWKRRKDKSVKKETGFSW 672



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 186/415 (44%), Gaps = 76/415 (18%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           LL L+ K G L  A  +F E+P+R   ++  M+ G  + G+  E++ +   +V+ G  P 
Sbjct: 102 LLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPT 161

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
            +T + +L  S+C  +     R +GR VH+ ++K  + +   +  ++++ Y K G    A
Sbjct: 162 QFTLTNVL--SSCAATEA---RGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETA 216

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS------ 259
           R VF+ M E++V    +M+S     G ++ A  +F    ++ IV +NA+I GY+      
Sbjct: 217 RAVFERMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNA 276

Query: 260 ----------------------ISIETARKAL-------EVHCQLIKNVFFEDVKLGSAL 290
                                  S+ +A   L       +VH  ++++      ++ +AL
Sbjct: 277 KALWFFSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHAYILRSRMPYIGQVTNAL 336

Query: 291 VDMYAKCGKIDDARRV---------------------------------FDHMQQKNVFT 317
           + MYAK G +++AR V                                 FD M  ++V  
Sbjct: 337 ISMYAKSGSVENARGVMQQAVMADLNVISFTALLEGYVKLGDMKHAREMFDVMSNRDVVA 396

Query: 318 WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377
           WT+MI GY +NG+ ++A+ELF +M     +PN  T    LS C     ++ G++I     
Sbjct: 397 WTAMIVGYEQNGHNDEAMELFRLMIRSGPEPNSYTVAAVLSVCASLACLEYGKQIHCKAI 456

Query: 378 RDYSMKPKMEHYA-CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           R  S++ +    +  +V +  R+GSL  A +    +  +  +  W +++ +   H
Sbjct: 457 R--SLQEQSSSVSNSIVTMYARSGSLPWARRVFDRVHWRKETVTWTSMIVALAQH 509



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/313 (21%), Positives = 124/313 (39%), Gaps = 82/313 (26%)

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSY-----ARIVFDMM--LEKNVICSTS 222
           GR +HA+ +K  + A   L   L+  Y             AR +FD +   ++NV    S
Sbjct: 42  GRAIHARAVKAGLLASAYLCNNLLSYYAGPAAGGGGGFREARRLFDEIPAAQRNVFTWNS 101

Query: 223 MISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS----------------------- 259
           ++S +   G + DA  +F +  E+D V +  M+ G +                       
Sbjct: 102 LLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIKMFLDMVTDGLSPT 161

Query: 260 -----------ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFD 308
                       + E      +VH  ++K      V + +++++MY KCG  + AR VF+
Sbjct: 162 QFTLTNVLSSCAATEARGVGRKVHSFVVKLGLSSCVPVANSVLNMYGKCGDAETARAVFE 221

Query: 309 HMQQKNVFTWTSM-------------------------------IDGYGKNGNPNQALEL 337
            M +++V +W +M                               I GY +NG   +AL  
Sbjct: 222 RMPERSVSSWNAMVSLDAHLGRMDLALSLFENMPDRTIVSWNAVIAGYNQNGLNAKALWF 281

Query: 338 FC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA----CM 392
           F  M+    + P+  T    LSAC + G+V  G+++       Y ++ +M +       +
Sbjct: 282 FSRMLSYSTMAPDEFTITSVLSACANLGMVSIGKQVHA-----YILRSRMPYIGQVTNAL 336

Query: 393 VDLLGRAGSLEQA 405
           + +  ++GS+E A
Sbjct: 337 ISMYAKSGSVENA 349



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 43/156 (27%), Positives = 75/156 (48%), Gaps = 19/156 (12%)

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           +NVF       ++L+ +YAK G++ DAR VF  M +++  +WT M+ G  + G   +A++
Sbjct: 94  RNVF-----TWNSLLSLYAKSGRLADARAVFAEMPERDPVSWTVMVVGLNRVGRFGEAIK 148

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC----- 391
           +F  M    + P   T    LS+C        GR++       +S   K+   +C     
Sbjct: 149 MFLDMVTDGLSPTQFTLTNVLSSCAATEARGVGRKV-------HSFVVKLGLSSCVPVAN 201

Query: 392 -MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
            ++++ G+ G  E A      MPE+  S  W A++S
Sbjct: 202 SVLNMYGKCGDAETARAVFERMPERSVSS-WNAMVS 236


>gi|296082968|emb|CBI22269.3| unnamed protein product [Vitis vinifera]
          Length = 509

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 143/439 (32%), Positives = 234/439 (53%), Gaps = 19/439 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IHA + K  +   + +  KL+     C  +  A  +F+++    +  YN +I  +++N 
Sbjct: 35  QIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAHVRNS 94

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           +   + S+  ++  SG   D +T+  +LKA   C   V +   +  M+HAQ+ K     D
Sbjct: 95  EPLLAFSVFFEMQDSGVCADNFTYPFLLKA---CSGKVWV--RVVEMIHAQVEKMGFCLD 149

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             +  +L+DSY K G+   AR +FD M E++ +   +++ G++  G +  A E+F K   
Sbjct: 150 IFVPNSLIDSYFKLGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPA 209

Query: 246 KDIVVYNAMIEGYSISIETARKAL-------------EVHCQLIKNVFFEDVKLGSALVD 292
           +++V ++ M  G      T    L              VH  + +  F     + +AL+D
Sbjct: 210 RNVVSWSTMEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERTRFKCSTPVSNALID 269

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           MYAKCG +++A  +F  M +K+V +W ++I G   +G+  +AL+LF  M+     P+ VT
Sbjct: 270 MYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAMHGHGEKALQLFSRMKGEGFVPDKVT 329

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
           F+G L AC HAG VD+G   F +MERDY + P++EHY CMVDLLGR G L++A + V  M
Sbjct: 330 FVGVLCACTHAGFVDEGLHYFHAMERDYGVPPEVEHYGCMVDLLGRGGRLKEAFRLVHSM 389

Query: 413 PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSV 472
           P +PN+ +W  LL +CR+H    +A    + + K   +D  G    LSN  AAAG WD+ 
Sbjct: 390 PLEPNAIIWGTLLGACRMHSATGLAEEVFDRLVKSELSD-SGNLSMLSNIYAAAGDWDNF 448

Query: 473 TELREKMKLRGVLKDTGCS 491
             +R +MK   + K +G S
Sbjct: 449 ANIRLRMKSTSIQKPSGGS 467



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 76/286 (26%), Positives = 136/286 (47%), Gaps = 21/286 (7%)

Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
           N  + +HAQ+LK ++  +  +   L+ ++    + + A  VF+ + + +V+   ++I   
Sbjct: 31  NQVKQIHAQVLKANLHRESFVGQKLIAAFSLCRQMTLAVNVFNQIQDPDVLLYNTLIRAH 90

Query: 228 MSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFED 283
           +       A  +F +     V  D   Y  +++  S  +   R    +H Q+ K  F  D
Sbjct: 91  VRNSEPLLAFSVFFEMQDSGVCADNFTYPFLLKACSGKV-WVRVVEMIHAQVEKMGFCLD 149

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM-- 341
           + + ++L+D Y K G++ +ARR+FD M +++  +W +++DGY K G  N A ELF  M  
Sbjct: 150 IFVPNSLIDSYFKLGELGEARRLFDEMPERDTVSWNTILDGYVKAGEMNAAFELFEKMPA 209

Query: 342 --------QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMV 393
                    E  ++ +  T +  LSAC  +GL+  G+ +  S+ER    K        ++
Sbjct: 210 RNVVSWSTMEAGLKFDDGTVISILSACAVSGLLGLGKRVHASIERT-RFKCSTPVSNALI 268

Query: 394 DLLGRAGSLEQALKFVLEMPEKPNSDV--WAALLSSCRLHDDVEMA 437
           D+  + GSLE AL     M  K   DV  W A++    +H   E A
Sbjct: 269 DMYAKCGSLENALSIFHGMVRK---DVVSWNAIIQGLAMHGHGEKA 311



 Score = 69.3 bits (168), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 50/186 (26%), Positives = 89/186 (47%), Gaps = 5/186 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA I +T  K +T +S  L+ ++ KCG+L+ A  +F  + ++ + ++N +I G   
Sbjct: 245 GKRVHASIERTRFKCSTPVSNALIDMYAKCGSLENALSIFHGMVRKDVVSWNAIIQGLAM 304

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G  E++L L  ++   G  PD  TF  +L    C  ++           HA      V 
Sbjct: 305 HGHGEKALQLFSRMKGEGFVPDKVTFVGVL----CACTHAGFVDEGLHYFHAMERDYGVP 360

Query: 184 ADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            +   Y  +VD   +GG+   A R+V  M LE N I   +++           AEE+F +
Sbjct: 361 PEVEHYGCMVDLLGRGGRLKEAFRLVHSMPLEPNAIIWGTLLGACRMHSATGLAEEVFDR 420

Query: 243 TVEKDI 248
            V+ ++
Sbjct: 421 LVKSEL 426


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 136/434 (31%), Positives = 250/434 (57%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH+   KTG + +  +S  L+ ++ K G L+ A ++ + L ++ + ++  MIAGY++
Sbjct: 364 GEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQ 423

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +   +++L+  +++   G  PD    +  +  S C   N       G  +HA+I      
Sbjct: 424 HECCKDALAAFKEMQKCGIWPDNIGLASAI--SGCAGINA---MRQGLQIHARIYVSGYS 478

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  ++ ALV+ Y + G+   A   F+ M  K+ I    ++SGF   G  E+A ++F + 
Sbjct: 479 GDVSIWNALVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRM 538

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               V+ ++  + + +   S ++   ++  ++H ++IK     + ++G+AL+ +Y KCG 
Sbjct: 539 DQSGVKHNVFTFVSALSA-SANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGS 597

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
            +DA+  F  M ++N  +W ++I    ++G   +AL+LF  M++  ++PN VTF+G L+A
Sbjct: 598 FEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAA 657

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H GLV++G   F+SM  +Y ++P+ +HYAC++D+ GRAG L++A KF+ EMP   ++ 
Sbjct: 658 CSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAM 717

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW  LLS+C++H ++E+   AA  + +L  +D   +YV LSN  A   KW +  ++R+ M
Sbjct: 718 VWRTLLSACKVHKNIEVGEFAAKHLLELEPHD-SASYVLLSNAYAVTEKWANRDQVRKMM 776

Query: 480 KLRGVLKDTGCSWV 493
           + RGV K+ G SW+
Sbjct: 777 RDRGVRKEPGRSWI 790



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 190/385 (49%), Gaps = 12/385 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IHA     G+     +   L+ L+ K G +  A ++F+EL  R   ++  M++GY +NG
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             EE+L L R++  +G  P  Y  S +L  S+C ++ +      GR++HAQ  K    ++
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVL--SSCTKAELFAQ---GRLIHAQGYKHGFCSE 177

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT-- 243
             +  A++  Y++ G    A  VF  M  ++ +   ++ISG    G  E A EIF +   
Sbjct: 178 IFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQF 237

Query: 244 --VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
             +  D V  ++++   + S+   +K  ++H  L K     D  +  +L+D+Y KCG ++
Sbjct: 238 SGLSPDCVTISSLLAACA-SLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVE 296

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            A  +F+   + NV  W  M+  +G+  +  ++ ELFC MQ   ++PN  T+   L  C 
Sbjct: 297 TALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCT 356

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
               +D G +I  S+      +  M     ++D+  + G LE+A + VLEM ++ +   W
Sbjct: 357 CTREIDLGEQI-HSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARR-VLEMLKEKDVVSW 414

Query: 422 AALLSSCRLHDDVEMANIAANEIFK 446
            ++++    H+  + A  A  E+ K
Sbjct: 415 TSMIAGYVQHECCKDALAAFKEMQK 439



 Score =  139 bits (349), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 100/377 (26%), Positives = 180/377 (47%), Gaps = 13/377 (3%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           T   L S L     ++    G  IHA   K G      +   ++ L+L+CG+ + A ++F
Sbjct: 142 TPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVF 201

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
            ++P R    +N +I+G+ + G  E +L +  ++  SG  PD  T S +L A   C S  
Sbjct: 202 CDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAA---CASLG 258

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
            L +  G  +H+ + K  + +D ++  +L+D YVK G    A ++F+     NV+    M
Sbjct: 259 DLQK--GTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLM 316

Query: 224 ISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
           +  F     +  + E+F +     +  +   Y  ++   + + E      ++H   +K  
Sbjct: 317 LVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGE-QIHSLSVKTG 375

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
           F  D+ +   L+DMY+K G ++ ARRV + +++K+V +WTSMI GY ++     AL  F 
Sbjct: 376 FESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFK 435

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME-RDYSMKPKMEHYACMVDLLGR 398
            MQ+C + P+ +    A+S C     + +G +I   +    YS    +  +  +V+L  R
Sbjct: 436 EMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSI--WNALVNLYAR 493

Query: 399 AGSLEQALKFVLEMPEK 415
            G + +A     EM  K
Sbjct: 494 CGRIREAFSSFEEMELK 510



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 56/111 (50%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +  SAL    N      G +IHA + KTG    T +   L+ L+ KCG+ + A   F E+
Sbjct: 549 TFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEM 608

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
            +R   ++N +I    ++G+  E+L L  ++   G +P+  TF  +L A +
Sbjct: 609 SERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACS 659


>gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa]
 gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa]
          Length = 601

 Score =  256 bits (653), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 160/478 (33%), Positives = 247/478 (51%), Gaps = 17/478 (3%)

Query: 29  FPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLK-IHAHITKTGVKPNTNISIKLL 87
           FPP +Q   S  +    T+ PS+L   +   T    LK I A   KT ++ +  I  KL+
Sbjct: 6   FPPVIQQSPSQHSSYYNTTYPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQILTKLI 65

Query: 88  ---ILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERP 144
                +    ++ YA Q+F+ +PQ  +  +N M  GY ++    +++SL  K ++    P
Sbjct: 66  NSCTQNPTTASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALNYNLLP 125

Query: 145 DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSY 204
           D YTF  +LKA    ++        G+ +H   +K  +  +  +   L++ Y        
Sbjct: 126 DDYTFPSLLKACVVAKA-----FQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDVDG 180

Query: 205 ARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR-----KTVEKDIVVYNAMIEGYS 259
           A+ VFD +LE  V+   ++I+G+       +A  +FR     K    D+ V + +     
Sbjct: 181 AQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSCAL 240

Query: 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWT 319
           +      K   +H  + KN   + VK+ +AL+DMYAKCG +D A  VF+ M  ++   W+
Sbjct: 241 LGALDLGKW--IHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWS 298

Query: 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD 379
           +MI  Y  +G     + +F  M    VQP+ +TFLG L AC H GLVD+G   F SM   
Sbjct: 299 AMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEV 358

Query: 380 YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANI 439
           Y + P ++HY CMVDLLGRAG L +A KF+ E+P KP   +W  LLSSC  H ++E+A  
Sbjct: 359 YGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQ 418

Query: 440 AANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTES 497
             N+I +L+ +   G YV LSN  A AGKW+ V  LR+ M  +G +K  GCS +  ++
Sbjct: 419 VMNQILELD-DSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDN 475


>gi|147807930|emb|CAN62155.1| hypothetical protein VITISV_032407 [Vitis vinifera]
          Length = 585

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 163/520 (31%), Positives = 262/520 (50%), Gaps = 53/520 (10%)

Query: 5   SRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPS-ALQHYI------- 56
           SR+  SV S T N +Y  +   Q   P     +++    T +S P  AL+ Y        
Sbjct: 47  SRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTESSTPERALRFYAEMRKKGL 106

Query: 57  ---NSDTPFY------------GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQ 101
              N   PF             G  +     K G   +  +   L+ ++ +CG   +A  
Sbjct: 107 LGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGFGGDVFVVNGLISMYCRCGETGWARA 166

Query: 102 MFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV-----RKLVSSGERPDGYTFSMILKAS 156
           +FD   ++ L ++N M+ GY+  G++E + ++      R +VS     DGY         
Sbjct: 167 VFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPERDVVSWSIMIDGYG-------- 218

Query: 157 TCCRSNVPLPRNLGRMVHAQILKCDVKADDVL-YTALVDSYVKGGKTSYARIVFDMMLEK 215
                     + +G +  A++    +   D++ + +++D Y K G+   AR +FB ML+K
Sbjct: 219 ----------KKMGEVNRARVFFDSMPTRDLVSWNSMIDGYAKVGEMEVAREIFBKMLQK 268

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE----V 271
           NVI  + MI G+      ++A  +FR+ + + I      + G ++S  +   AL+    +
Sbjct: 269 NVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVVG-AVSACSQLGALDQGRWI 327

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
           H  + +N    D+ + +ALVDMY KCG  D+AR +F+ M ++NV +W  MI G G NG  
Sbjct: 328 HLYMKRNRMLLDIVVQTALVDMYLKCGSXDEARXIFNSMPERNVVSWNVMIVGLGMNGFG 387

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC 391
            +ALE F  M+   +  + + FLG L AC HA LV +G  IF  M+  Y ++PK+EHY C
Sbjct: 388 KEALECFXQMEMERIPMDDLLFLGVLMACSHANLVTEGLHIFNQMKGVYRLEPKLEHYGC 447

Query: 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451
           +VDLLGRAG L+Q    +  MP KPN+ +W +LL +CR+H +V +A I    + +L A+D
Sbjct: 448 LVDLLGRAGQLDQIQNIIQSMPMKPNAALWGSLLLACRIHQNVTLAEIVVERLAELKADD 507

Query: 452 RPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
             G YV +SN  A  G W+ +  +R+ MK R + KD G S
Sbjct: 508 -SGVYVLMSNIYADVGMWEGMLRIRKLMKERKMKKDIGRS 546



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/326 (25%), Positives = 145/326 (44%), Gaps = 24/326 (7%)

Query: 173 VHAQILKCDVKADDVLYTALVDSYV-KGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
           +HAQ++  ++ +D    + L+DS V K    +YA +VF  + + N     +M+  +    
Sbjct: 30  IHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTMVKCYTESS 89

Query: 232 FVEDA----EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG 287
             E A     E+ +K +  D   Y  +++            L V  + +K  F  DV + 
Sbjct: 90  TPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGLLEGGL-VQGEAVKRGFGGDVFVV 148

Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347
           + L+ MY +CG+   AR VFD   +K++ +W SM+ GY   G    A  +F  M E    
Sbjct: 149 NGLISMYCRCGETGWARAVFDGFSEKDLVSWNSMLGGYVWCGEMENAQNMFDEMPE---- 204

Query: 348 PNYVTFLGALSACGHA-GLVDKGREIFESM-ERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
            + V++   +   G   G V++ R  F+SM  RD      +  +  M+D   + G +E A
Sbjct: 205 RDVVSWSIMIDGYGKKMGEVNRARVFFDSMPTRD------LVSWNSMIDGYAKVGEMEVA 258

Query: 406 LKFVLEMPEKPNSDVWAALLSSCRLH-DDVEMANIAANEIFKLNANDRPGAYVALS--NT 462
            +   +M +K N   W+ ++     H D  E  N+    + +    DR     A+S  + 
Sbjct: 259 REIFBKMLQK-NVISWSIMIDGYAXHRDSKEALNLFRQMLCQGIKPDRVSVVGAVSACSQ 317

Query: 463 LAA--AGKWDSVTELREKMKLRGVLK 486
           L A   G+W  +   R +M L  V++
Sbjct: 318 LGALDQGRWIHLYMKRNRMLLDIVVQ 343



 Score = 50.1 bits (118), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 2/120 (1%)

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVD-MYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
           +T+ + L++H QLI      D    S L+D + +K   ++ A  VF  + Q N F   +M
Sbjct: 22  KTSSQILQIHAQLITTNLISDTFAASRLLDSVVSKTLNVNYAELVFAQIHQPNSFICNTM 81

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG-HAGLVDKGREIFESMERDY 380
           +  Y ++  P +AL  +  M++  +  +  T+   L ACG   GL++ G    E+++R +
Sbjct: 82  VKCYTESSTPERALRFYAEMRKKGLLGDNYTYPFVLKACGAMCGLLEGGLVQGEAVKRGF 141


>gi|125557011|gb|EAZ02547.1| hypothetical protein OsI_24658 [Oryza sativa Indica Group]
          Length = 635

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 145/461 (31%), Positives = 236/461 (51%), Gaps = 44/461 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++HA   + GV  +  +  +L   +     L     +    P  T   Y   I  +   G
Sbjct: 53  ELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRG 112

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
               +L+L+ +++  G  P  +T S  L A   C         LGR +HA   K  +  D
Sbjct: 113 LHLAALALLSEMLGRGLIPTSHTLSSSLPA---CHGLA-----LGRALHAYAFKLALAGD 164

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             + TAL+  Y +GG    AR +FD M + +V+  T+M++ +   G ++DA E+F     
Sbjct: 165 SYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPS 224

Query: 246 KDIVVYNAMIEGYS----------------------------------ISIETARKALEV 271
           KD + +NAMI+GY+                                    + TA     +
Sbjct: 225 KDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWL 284

Query: 272 HCQLIKNVFFE-DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           H  +  +   + + ++G+AL+DMY KCG ++DA  VF+ +  K++  W +MI+GY  +G+
Sbjct: 285 HSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGD 344

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
             +ALE+F  ++   + P  +TF+G L+AC H+GLVD+G + F+SME +Y++ PK+EHY 
Sbjct: 345 SRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYG 404

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
           CMVDLLGRAG +E+A   V  M   P++ +W +LL++CRLH ++ +    A+ +      
Sbjct: 405 CMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLA 464

Query: 451 DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
           +  G Y+ LSN  AA G W+ V  +R  MK  G+ K+ GCS
Sbjct: 465 N-SGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCS 504



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 139/349 (39%), Gaps = 82/349 (23%)

Query: 54  HYINSDTPF-----YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE--- 105
           H ++S  P       G  +HA+  K  +  ++ ++  LL ++ + G    A  +FDE   
Sbjct: 134 HTLSSSLPACHGLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPD 193

Query: 106 ----------------------------LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL 137
                                       +P +    +N MI GY ++G+  E+L L R +
Sbjct: 194 PHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWM 253

Query: 138 VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC-DVKADDVLYTALVDSY 196
           + SG  PD    ++IL  S   +         GR +H+ +     V+ +  + TAL+D Y
Sbjct: 254 LRSGVDPD--EVAIILALSAVAQLGTA---ESGRWLHSYVKNSRRVQLNARVGTALIDMY 308

Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE 256
            K G    A  VF+ + +K+++   +MI+G+   G                         
Sbjct: 309 CKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHG------------------------- 343

Query: 257 GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF 316
                   +RKALE+  QL     +        L++  +  G +D+  + F  M+++   
Sbjct: 344 -------DSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAI 396

Query: 317 T-----WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
                 +  M+D  G+ G   +A   F ++Q   + P+ V ++  L+AC
Sbjct: 397 VPKIEHYGCMVDLLGRAGLIEEA---FHLVQSMTIAPDTVMWVSLLAAC 442


>gi|115470299|ref|NP_001058748.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|22831309|dbj|BAC16163.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|24414055|dbj|BAC22304.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113610284|dbj|BAF20662.1| Os07g0113500 [Oryza sativa Japonica Group]
 gi|125598898|gb|EAZ38474.1| hypothetical protein OsJ_22862 [Oryza sativa Japonica Group]
          Length = 634

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 145/461 (31%), Positives = 236/461 (51%), Gaps = 44/461 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++HA   + GV  +  +  +L   +     L     +    P  T   Y   I  +   G
Sbjct: 52  ELHAAAVRAGVDGDRAVGFRLQRAYAASDRLDLTVTLLRLTPDPTTVFYTSAIHAHSSRG 111

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
               +L+L+ +++  G  P  +T S  L A   C         LGR +HA   K  +  D
Sbjct: 112 LHLAALALLSEMLGRGLIPTSHTLSSSLPA---CHGLA-----LGRALHAYAFKLALAGD 163

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             + TAL+  Y +GG    AR +FD M + +V+  T+M++ +   G ++DA E+F     
Sbjct: 164 SYVATALLGMYARGGDADAARALFDEMPDPHVVPVTAMLTCYAKMGALDDARELFDGMPS 223

Query: 246 KDIVVYNAMIEGYS----------------------------------ISIETARKALEV 271
           KD + +NAMI+GY+                                    + TA     +
Sbjct: 224 KDFICWNAMIDGYTQHGRPNEALRLFRWMLRSGVDPDEVAIILALSAVAQLGTAESGRWL 283

Query: 272 HCQLIKNVFFE-DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           H  +  +   + + ++G+AL+DMY KCG ++DA  VF+ +  K++  W +MI+GY  +G+
Sbjct: 284 HSYVKNSRRVQLNARVGTALIDMYCKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHGD 343

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
             +ALE+F  ++   + P  +TF+G L+AC H+GLVD+G + F+SME +Y++ PK+EHY 
Sbjct: 344 SRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAIVPKIEHYG 403

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
           CMVDLLGRAG +E+A   V  M   P++ +W +LL++CRLH ++ +    A+ +      
Sbjct: 404 CMVDLLGRAGLIEEAFHLVQSMTIAPDTVMWVSLLAACRLHKNMALGQQIADYLVAGGLA 463

Query: 451 DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
           +  G Y+ LSN  AA G W+ V  +R  MK  G+ K+ GCS
Sbjct: 464 N-SGMYILLSNIYAAVGNWEEVARVRSMMKASGIQKEPGCS 503



 Score = 71.2 bits (173), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 75/349 (21%), Positives = 139/349 (39%), Gaps = 82/349 (23%)

Query: 54  HYINSDTPF-----YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE--- 105
           H ++S  P       G  +HA+  K  +  ++ ++  LL ++ + G    A  +FDE   
Sbjct: 133 HTLSSSLPACHGLALGRALHAYAFKLALAGDSYVATALLGMYARGGDADAARALFDEMPD 192

Query: 106 ----------------------------LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL 137
                                       +P +    +N MI GY ++G+  E+L L R +
Sbjct: 193 PHVVPVTAMLTCYAKMGALDDARELFDGMPSKDFICWNAMIDGYTQHGRPNEALRLFRWM 252

Query: 138 VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC-DVKADDVLYTALVDSY 196
           + SG  PD    ++IL  S   +         GR +H+ +     V+ +  + TAL+D Y
Sbjct: 253 LRSGVDPD--EVAIILALSAVAQLGTA---ESGRWLHSYVKNSRRVQLNARVGTALIDMY 307

Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE 256
            K G    A  VF+ + +K+++   +MI+G+   G                         
Sbjct: 308 CKCGSLEDAVSVFNSIGDKDIVVWNAMINGYAMHG------------------------- 342

Query: 257 GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF 316
                   +RKALE+  QL     +        L++  +  G +D+  + F  M+++   
Sbjct: 343 -------DSRKALEMFSQLRSQGLWPTDITFIGLLNACSHSGLVDEGHQFFQSMEEEYAI 395

Query: 317 T-----WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
                 +  M+D  G+ G   +A   F ++Q   + P+ V ++  L+AC
Sbjct: 396 VPKIEHYGCMVDLLGRAGLIEEA---FHLVQSMTIAPDTVMWVSLLAAC 441


>gi|449513257|ref|XP_004164277.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 558

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 156/438 (35%), Positives = 246/438 (56%), Gaps = 18/438 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGA---LKYAGQMFDELPQRTLSAYNYMIAGYL 122
           ++H +I K+  K N  +S++ L+L     A   L YA  +F  +P     AYN +I  + 
Sbjct: 6   RLHCYIIKSS-KQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTIIRSHS 64

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +      SLS    + S+G   D +TF  +LKA  C R  + L       +H+ I+K  +
Sbjct: 65  RFFP-SHSLSYFFSMRSNGIPLDNFTFPFVLKA--CSRLQINLH------LHSLIVKYGL 115

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            +D  +  AL+  Y   G    A  VFD M E++ +  +++I+ F++ G+  +A ++F K
Sbjct: 116 GSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEK 175

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCG 298
              +D VV + +     IS  +    LE    V   + +  F   V LG+AL+DM+++CG
Sbjct: 176 MQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGFGVSVALGTALIDMFSRCG 235

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            ID++  VF+ M  +NV TWT++I+G G +G   +AL +F  M++  VQP+YVTF G L 
Sbjct: 236 SIDESIVVFEKMAVRNVLTWTALINGLGIHGRSMEALAMFHSMRKSGVQPDYVTFSGVLV 295

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC H GLV +G +IFES+ + Y M P ++HY CMVD+LGRAG L +A  FV  MP KPNS
Sbjct: 296 ACSHGGLVKEGWDIFESIRKVYGMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNS 355

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            +W  LL +C  H+++ +A     +I K++++ + G  V LSN   AAG+W     +R K
Sbjct: 356 IIWRTLLGACVNHNNLGLAEKVKAKISKISSS-QNGDLVLLSNVYGAAGRWVEKASIRSK 414

Query: 479 MKLRGVLKDTGCSWVGTE 496
           M+ + + K+ GCS +  +
Sbjct: 415 MREKRIGKEPGCSSINVD 432



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 141/312 (45%), Gaps = 47/312 (15%)

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           L +H+ I K G+  +  +   L+ ++  CG+L+ A ++FDE+ +R   +++ +IA +L N
Sbjct: 104 LHLHSLIVKYGLGSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNN 163

Query: 125 GQVEESLSLVRKL-VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           G   E+L L  K+ +     PD  T   ++ A +           LGR V A I +    
Sbjct: 164 GYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGD-----LELGRWVRAFIGRLGFG 218

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
               L TAL+D + + G    + +VF+ M  +NV+  T++I+G    G   +A  +F   
Sbjct: 219 VSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGIHGRSMEALAMFHSM 278

Query: 241 RKT-VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           RK+ V+ D V ++ ++   S            H  L+K  +           D++    K
Sbjct: 279 RKSGVQPDYVTFSGVLVACS------------HGGLVKEGW-----------DIFESIRK 315

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +     + DH        +  M+D  G+ G  N+A +    ++   ++PN + +   L A
Sbjct: 316 VYGMDPLLDH--------YGCMVDILGRAGLLNEAYDF---VERMPMKPNSIIWRTLLGA 364

Query: 360 C---GHAGLVDK 368
           C    + GL +K
Sbjct: 365 CVNHNNLGLAEK 376



 Score = 44.3 bits (103), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 60/117 (51%), Gaps = 3/117 (2%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           + +T  S+ SA+ H  + +    G  + A I + G   +  +   L+ +  +CG++  + 
Sbjct: 185 DEVTMLSVISAISHLGDLEL---GRWVRAFIGRLGFGVSVALGTALIDMFSRCGSIDESI 241

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
            +F+++  R +  +  +I G   +G+  E+L++   +  SG +PD  TFS +L A +
Sbjct: 242 VVFEKMAVRNVLTWTALINGLGIHGRSMEALAMFHSMRKSGVQPDYVTFSGVLVACS 298


>gi|449526834|ref|XP_004170418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 154/497 (30%), Positives = 254/497 (51%), Gaps = 73/497 (14%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGA------LKYAGQMFDELPQRTLSAYNY 116
           Y  ++HA + ++G   +  +S  LL    KC A        +A ++F  +P   +  +N 
Sbjct: 48  YLTQLHALVLRSGHFQDHYVSGALL----KCYANPHFSNFDFALKVFSSIPNPNVFIWNI 103

Query: 117 MIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS--------------- 161
           +I G L+N ++ +++    ++V    RP+ +T+  + KA +  ++               
Sbjct: 104 VIKGCLENNKLFKAIYFYGRMVIDA-RPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHG 162

Query: 162 ----------NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
                      + +  + GR+  A+ +    ++D V +  ++D Y+K G    A+ +F  
Sbjct: 163 IGSDVHIKSAGIQMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQ 222

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE- 270
           M  KN+     MI+G    G + DA ++F +  E+D + +++M++GY IS    ++ALE 
Sbjct: 223 MPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGY-ISAGRYKEALEI 281

Query: 271 ----------------------------------VHCQLIKNVFFEDVKLGSALVDMYAK 296
                                             VH  L +N    D  LG+AL+DMYAK
Sbjct: 282 FQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAK 341

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG++D    VF+ M+++ +FTW +MI G   +G    ALELF  +QE  ++PN +T +G 
Sbjct: 342 CGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGV 401

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           L+AC HAG VDKG  IF++M   Y + P++EHY CMVDLLGR+G   +A   +  MP KP
Sbjct: 402 LTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKP 461

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
           N+ VW ALL +CR+H + ++A      + +L   +  G YV LSN  A  G++D V+++R
Sbjct: 462 NAAVWGALLGACRIHGNFDLAERVGKILLELEPQN-SGRYVLLSNIYAKVGRFDDVSKIR 520

Query: 477 EKMKLRGVLKDTGCSWV 493
           + MK RG+    G S V
Sbjct: 521 KLMKNRGIKTVPGVSIV 537



 Score = 48.5 bits (114), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 95/228 (41%), Gaps = 14/228 (6%)

Query: 259 SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK--CGKIDDARRVFDHMQQKNVF 316
           S SI + +   ++H  ++++  F+D  +  AL+  YA       D A +VF  +   NVF
Sbjct: 40  SKSITSLQYLTQLHALVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVF 99

Query: 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM 376
            W  +I G  +N    +A+  +  M     +PN  T+     AC  A  V +GR+I   +
Sbjct: 100 IWNIVIKGCLENNKLFKAIYFYGRMV-IDARPNKFTYPTLFKACSVAQAVQEGRQIHGHV 158

Query: 377 ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV--WAALLSSCRLHDDV 434
            + + +   +   +  + +    G LE A K    M     SDV  W  ++        +
Sbjct: 159 VK-HGIGSDVHIKSAGIQMYASFGRLEDARK----MFYSGESDVVCWNTMIDGYLKCGVL 213

Query: 435 EMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
           E    AA  +F        G++  + N LA  G      +L ++M  R
Sbjct: 214 E----AAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSER 257


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 148/441 (33%), Positives = 236/441 (53%), Gaps = 15/441 (3%)

Query: 59  DTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMI 118
           DT F G ++H  + KT    N  +   LL  + K   +   G++F E+P+    +YN +I
Sbjct: 256 DTKF-GQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVI 314

Query: 119 AGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
             Y  NGQ +ES  L RKL  +      + F+ +L  +T       L   +GR +H Q +
Sbjct: 315 TSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATS-----SLNLRMGRQIHCQAI 369

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
                 +  +  ALVD Y K      A+ +FD +  K+ +  T+MIS ++ +G  E+   
Sbjct: 370 TVGANFESRVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGIN 429

Query: 239 IF----RKTVEKDIVVYNAMIEGYS--ISIETARKALEVHCQLIKNVFFEDVKLGSALVD 292
           +F    R  V  D   + +++   +   SI   R   ++H  LI++ F  +V  GSAL+D
Sbjct: 430 VFSDMRRTGVPADQATFASILRACANLASISLGR---QLHSLLIRSGFMSNVYSGSALLD 486

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
            YAKCG + DA + F  M ++N  +W ++I  Y +NGN +  L  F  M +   +P+ V+
Sbjct: 487 TYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKPDSVS 546

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
           FL  LSAC H G V++    F SM + Y + PK EHY  MVD+L R G  ++A K + EM
Sbjct: 547 FLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKLMTEM 606

Query: 413 PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSV 472
           P +P+  +W+++L+SCR+H + E+A  AA+ +F +        Y+ +SN  A AG+WD+V
Sbjct: 607 PFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQWDNV 666

Query: 473 TELREKMKLRGVLKDTGCSWV 493
            ++++ M+ RGV K    SWV
Sbjct: 667 AKVKKAMRDRGVRKVPAYSWV 687



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 178/367 (48%), Gaps = 12/367 (3%)

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           ++IH H+ K G + N  +   L+  + K   L  A Q+F  +  +    +N ++ GY   
Sbjct: 160 VQIHTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNE 219

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
           G  EE++ L  +L +SG +P  +TF+ +L A+             G+ VH  +LK +   
Sbjct: 220 GLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDT-----KFGQQVHGFVLKTNFVW 274

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK-- 242
           +  +  AL+D Y K  +      +F  M E + I    +I+ +   G  +++ ++FRK  
Sbjct: 275 NVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQ 334

Query: 243 --TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
               ++    +  ++   + S+   R   ++HCQ I      + ++ +ALVDMYAKC   
Sbjct: 335 FTRFDRRQFPFATLLSIATSSLNL-RMGRQIHCQAITVGANFESRVENALVDMYAKCNGD 393

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
            +A+++FD++  K+   WT+MI  Y + G   + + +F  M+   V  +  TF   L AC
Sbjct: 394 KEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQATFASILRAC 453

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            +   +  GR++   + R   M   +   + ++D   + G +  A+K   EMPE+ NS  
Sbjct: 454 ANLASISLGRQLHSLLIRSGFMS-NVYSGSALLDTYAKCGCMTDAIKSFGEMPER-NSVS 511

Query: 421 WAALLSS 427
           W AL+S+
Sbjct: 512 WNALISA 518



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 180/367 (49%), Gaps = 15/367 (4%)

Query: 67  IHAHITKTGVKPNTNISIKLLIL-HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +HAH     +     IS+ ++I  HLK G L  A ++FD + +RT  ++  +I GYL++ 
Sbjct: 60  VHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSN 119

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           Q +E+  L   +   G  PD  T   +L       +     +N+   +H  ++K   + +
Sbjct: 120 QSKEAFRLYADMRRGGIEPDYVTLVTLLSGFGELET-----KNVIVQIHTHVIKLGYEYN 174

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
            ++  +LVD+Y K      A  +F  ML K+ +   S+++G+ ++G  E+A E+F +   
Sbjct: 175 LMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHN 234

Query: 246 KDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
             I      + A++   ++ ++  +   +VH  ++K  F  +V +G+AL+D Y+K  ++D
Sbjct: 235 SGIKPSDFTFAALLSA-AVGLDDTKFGQQVHGFVLKTNFVWNVFVGNALLDYYSKHDQVD 293

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           +  ++F  M + +  ++  +I  Y  NG   ++ +LF  +Q          F   LS   
Sbjct: 294 EVGKLFYEMPELDGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIAT 353

Query: 362 HAGLVDKGREIF-ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            +  +  GR+I  +++    + + ++E+   +VD+  +    ++A K    +  K ++  
Sbjct: 354 SSLNLRMGRQIHCQAITVGANFESRVEN--ALVDMYAKCNGDKEAQKIFDNIACK-STVP 410

Query: 421 WAALLSS 427
           W A++S+
Sbjct: 411 WTAMISA 417



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/267 (26%), Positives = 126/267 (47%), Gaps = 17/267 (6%)

Query: 159 CRSNVPLPRNL--GRMVHA-QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
           CRSN  +   L  G +VHA Q+       + +    ++  ++K GK S AR +FD M+E+
Sbjct: 44  CRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGKLSKARELFDGMVER 103

Query: 216 NVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEV 271
             +  T +I G++     ++A  ++    R  +E D V    ++ G+   +ET    +++
Sbjct: 104 TAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSGFG-ELETKNVIVQI 162

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
           H  +IK  +  ++ + ++LVD Y K   +  A ++F HM  K+  T+ S++ GY   G  
Sbjct: 163 HTHVIKLGYEYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLN 222

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA- 390
            +A+ELF  +    ++P+  TF   LSA    GL D     F      + +K        
Sbjct: 223 EEAIELFLELHNSGIKPSDFTFAALLSAA--VGLDDTK---FGQQVHGFVLKTNFVWNVF 277

Query: 391 ---CMVDLLGRAGSLEQALKFVLEMPE 414
               ++D   +   +++  K   EMPE
Sbjct: 278 VGNALLDYYSKHDQVDEVGKLFYEMPE 304


>gi|356524120|ref|XP_003530680.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g40405-like [Glycine max]
          Length = 616

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 165/479 (34%), Positives = 253/479 (52%), Gaps = 52/479 (10%)

Query: 56  INSDTPFYGLK-IHAHITKTGVKPNTNIS---IKLLILHLKCGALKYAGQMFDELPQRTL 111
           +NS T    +K IHA +   G+  N +     +  + LH     L YA ++ +     TL
Sbjct: 16  LNSCTTLKEMKQIHAQLVVKGILNNPHFHGQFVATIALH-NTTNLDYANKLLNHNNNPTL 74

Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSSGER---PDGYTFSMILKASTCCRSNVPLPRN 168
              N MI  Y K+    +S      ++ S      PD YTF+ +++     +++V     
Sbjct: 75  FTLNSMIRAYSKSSTPSKSFHFYANILHSNNNNLSPDNYTFTFLVRTCAQLQAHVT---- 130

Query: 169 LGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM 228
            G  VH  ++K   + D  + T LV  Y + G  S    VFD  +E +++  T+M++   
Sbjct: 131 -GLCVHGAVIKHGFELDPHVQTGLVFMYAELGCLSSCHNVFDGAVEPDLVTQTAMLNACA 189

Query: 229 SQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV----------------- 271
             G ++ A ++F +  E+D V +NAMI GY+     +R+AL+V                 
Sbjct: 190 KCGDIDFARKMFDEMPERDHVTWNAMIAGYA-QCGRSREALDVFHLMQMEGVKLNEVSMV 248

Query: 272 -------HCQLIKN-----VFFE------DVKLGSALVDMYAKCGKIDDARRVFDHMQQK 313
                  H Q++ +      + E       V LG+ALVDMYAKCG +D A +VF  M+++
Sbjct: 249 LVLSACTHLQVLDHGRWVHAYVERYKVRMTVTLGTALVDMYAKCGNVDRAMQVFWGMKER 308

Query: 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF 373
           NV+TW+S I G   NG   ++L+LF  M+   VQPN +TF+  L  C   GLV++GR+ F
Sbjct: 309 NVYTWSSAIGGLAMNGFGEESLDLFNDMKREGVQPNGITFISVLKGCSVVGLVEEGRKHF 368

Query: 374 ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDD 433
           +SM   Y + P++EHY  MVD+ GRAG L++AL F+  MP +P+   W+ALL +CR++ +
Sbjct: 369 DSMRNVYGIGPQLEHYGLMVDMYGRAGRLKEALNFINSMPMRPHVGAWSALLHACRMYKN 428

Query: 434 VEMANIAANEIFKL-NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
            E+  IA  +I +L + ND  GAYV LSN  A    W+SV+ LR+ MK +GV K  GCS
Sbjct: 429 KELGEIAQRKIVELEDKND--GAYVLLSNIYADYKNWESVSSLRQTMKAKGVKKLPGCS 485


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 142/437 (32%), Positives = 243/437 (55%), Gaps = 12/437 (2%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
            +G ++H+ I K G   N  +   L+ ++ KC  +  A ++FD++P+R L ++N MI G+
Sbjct: 27  LHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGF 86

Query: 122 LKNGQVEESLSLVRKLVSSGER-PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
             N   + ++ + + ++      P+  + S +L A   C +   L  N GR VH  ++K 
Sbjct: 87  FHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSA---CANMGGL--NFGRQVHGVVVKF 141

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
            +     +  +L+D Y K         +F  + +++V+    ++ GF+     E+A   F
Sbjct: 142 GLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYF 201

Query: 241 ----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
               R+ +  D   ++ ++   S S+    +   +H Q+IK  + +++ +  +L+ MYAK
Sbjct: 202 WVMRREGILPDEASFSTVLHS-SASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAK 260

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG + DA +VF+ ++  NV +WT+MI  Y  +G  NQ +ELF  M    ++P++VTF+  
Sbjct: 261 CGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCV 320

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           LSAC H G V++G   F SM++ + M P  EHYACMVDLLGRAG L++A +F+  MP KP
Sbjct: 321 LSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKP 380

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
              VW ALL +CR + +++M   AA  +F++   + PG YV L+N    +G+ +   E+R
Sbjct: 381 TPSVWGALLGACRKYGNLKMGREAAERLFEMEPYN-PGNYVLLANMCTRSGRLEEANEVR 439

Query: 477 EKMKLRGVLKDTGCSWV 493
             M + GV K+ GCSW+
Sbjct: 440 RLMGVNGVRKEPGCSWI 456



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 95/417 (22%), Positives = 170/417 (40%), Gaps = 64/417 (15%)

Query: 1   MP--NLSRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINS 58
           MP  NL    S +    HN  Y        F   L+    + N ++ +S+ SA     N 
Sbjct: 71  MPERNLVSWNSMIVGFFHNNLYDRAV--GVFKDVLREKTVIPNEVSVSSVLSACA---NM 125

Query: 59  DTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMI 118
               +G ++H  + K G+ P T +   L+ ++ KC       ++F  +  R +  +N ++
Sbjct: 126 GGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLV 185

Query: 119 AGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
            G+++N + EE+ +    +   G  PD  +FS +L +S    +      + G  +H QI+
Sbjct: 186 MGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAA-----LHQGTAIHDQII 240

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
           K     +  +  +L+  Y K G    A  VF+ + + NVI  T+MIS +   G      E
Sbjct: 241 KLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIE 300

Query: 239 IFRKTVEKDI----VVYNAMIEGYSISIETAR-KALEVHCQLIKNVFFEDVKLG----SA 289
           +F   + + I    V +  ++   S    T R +    H   +K +   D+  G    + 
Sbjct: 301 LFEHMLSEGIEPSHVTFVCVLSACS---HTGRVEEGLAHFNSMKKI--HDMNPGPEHYAC 355

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349
           +VD+  + G +D+A+R  + M  K                                  P 
Sbjct: 356 MVDLLGRAGWLDEAKRFIESMPMK----------------------------------PT 381

Query: 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQA 405
              +   L AC   G +  GR   E+ ER + M+P    +Y  + ++  R+G LE+A
Sbjct: 382 PSVWGALLGACRKYGNLKMGR---EAAERLFEMEPYNPGNYVLLANMCTRSGRLEEA 435


>gi|297815228|ref|XP_002875497.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321335|gb|EFH51756.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 629

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 148/441 (33%), Positives = 252/441 (57%), Gaps = 23/441 (5%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGAL--KYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           +H HI K G+  +  +   L+  + +CG L  + A ++F+++ +R   ++N M+ G +K 
Sbjct: 139 MHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKA 198

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA-QILKCDVK 183
           G++ ++    RKL     + D  +++ +L     CR           M  A ++ +   +
Sbjct: 199 GELRDA----RKLFDEMPQRDLISWNTMLDGYARCR----------EMSRAFELFEKMPE 244

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMML--EKNVICSTSMISGFMSQGFVEDAEEIFR 241
            + V ++ +V  Y K G    AR++FD M    KNV+  T +I+G+  +G +++A+++  
Sbjct: 245 RNTVSWSTMVMGYSKAGDMEMARVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLVD 304

Query: 242 KTVEKDIVV-YNAMIEGYSISIETARKAL--EVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
           + V   +     A I   +   E+   +L    H  + K+    +  + +AL+DMYAKCG
Sbjct: 305 QMVASGLRFDAAAAISILAACAESGLLSLGMRAHSIIKKSNLNSNASVLNALLDMYAKCG 364

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            +  A  VF+ M +K++ +W +M+ G G +G+  +A+ELF  M++  + P+ VTF+  L 
Sbjct: 365 SLKKAFDVFNDMPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRKEGIWPDKVTFIAVLC 424

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           +C HAGL+D+G + F SME+ Y + PK+EHY C+VDLLGR G L++A+K V  MP +PN 
Sbjct: 425 SCNHAGLIDEGIDYFYSMEKVYDLVPKVEHYGCLVDLLGRGGRLKEAIKVVQTMPMEPNV 484

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            +W ALL +CR+H++V++A    + + KL+ +D PG Y  LSN  AAA  W+ V ++R K
Sbjct: 485 VIWGALLGACRMHNEVDIAKEVLDNLVKLDPSD-PGNYTLLSNIYAAAEDWEGVADIRSK 543

Query: 479 MKLRGVLKDTGCSWVGTESGL 499
           MK  GV K +G S V  E G+
Sbjct: 544 MKSMGVEKPSGASSVELEDGI 564



 Score =  111 bits (278), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 92/370 (24%), Positives = 180/370 (48%), Gaps = 16/370 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++HA I +  +  + +I+ KL+     C     A ++F+++ +  +   N +I  +  N 
Sbjct: 37  QLHAQIIRRNLHQDLHIAPKLISALSLCRQTNLALRVFNQVQEPNVHLCNSLIRAHALNS 96

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           Q  ++  +  ++   G   D +T+  +LKA   C     LP  + +M+H  I K  + +D
Sbjct: 97  QPYQAFFVFSEMQRFGLFADNFTYPFLLKA---CSGLSWLP--VVKMMHNHIEKLGLSSD 151

Query: 186 DVLYTALVDSYVKGGKTSY--ARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
             +  AL+D Y + G      A  +F+ M E++ +   SM+ G +  G + DA ++F + 
Sbjct: 152 IYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARKLFDEM 211

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
            ++D++ +N M++GY+   E +R       +L + +   +    S +V  Y+K G ++ A
Sbjct: 212 PQRDLISWNTMLDGYARCREMSRA-----FELFEKMPERNTVSWSTMVMGYSKAGDMEMA 266

Query: 304 RRVFDHM--QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           R +FD M    KNV TWT +I GY + G   +A +L   M    ++ +    +  L+AC 
Sbjct: 267 RVMFDKMPFPAKNVVTWTIIIAGYAEKGLLKEADKLVDQMVASGLRFDAAAAISILAACA 326

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
            +GL+  G     S+ +  ++         ++D+  + GSL++A     +MP+K +   W
Sbjct: 327 ESGLLSLGMRA-HSIIKKSNLNSNASVLNALLDMYAKCGSLKKAFDVFNDMPKK-DLVSW 384

Query: 422 AALLSSCRLH 431
             +L    +H
Sbjct: 385 NTMLHGLGVH 394



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 92/185 (49%), Gaps = 5/185 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++ H+ I K+ +  N ++   LL ++ KCG+LK A  +F+++P++ L ++N M+ G   
Sbjct: 334 GMRAHSIIKKSNLNSNASVLNALLDMYAKCGSLKKAFDVFNDMPKKDLVSWNTMLHGLGV 393

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G  +E++ L  ++   G  PD  TF  +L    C  ++  L        ++     D+ 
Sbjct: 394 HGHGKEAIELFSRMRKEGIWPDKVTFIAVL----CSCNHAGLIDEGIDYFYSMEKVYDLV 449

Query: 184 ADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
                Y  LVD   +GG+   A ++V  M +E NV+   +++        V+ A+E+   
Sbjct: 450 PKVEHYGCLVDLLGRGGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDN 509

Query: 243 TVEKD 247
            V+ D
Sbjct: 510 LVKLD 514



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 61/253 (24%), Positives = 113/253 (44%), Gaps = 18/253 (7%)

Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
           N  + +HAQI++ ++  D  +   L+ +     +T+ A  VF+ + E NV    S+I   
Sbjct: 33  NQVKQLHAQIIRRNLHQDLHIAPKLISALSLCRQTNLALRVFNQVQEPNVHLCNSLIRAH 92

Query: 228 MSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYS-ISIETARKALEVHCQLIKNVFFE 282
                   A  +F    R  +  D   Y  +++  S +S     K +  H +  K     
Sbjct: 93  ALNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGLSWLPVVKMMHNHIE--KLGLSS 150

Query: 283 DVKLGSALVDMYAKCG--KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
           D+ + +AL+D Y++CG   + DA ++F+ M +++  +W SM+ G  K G    A +LF  
Sbjct: 151 DIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARKLFDE 210

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           M     Q + +++   L        + +  E+FE M    ++      ++ MV    +AG
Sbjct: 211 MP----QRDLISWNTMLDGYARCREMSRAFELFEKMPERNTVS-----WSTMVMGYSKAG 261

Query: 401 SLEQALKFVLEMP 413
            +E A     +MP
Sbjct: 262 DMEMARVMFDKMP 274


>gi|224119830|ref|XP_002318172.1| predicted protein [Populus trichocarpa]
 gi|222858845|gb|EEE96392.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 150/433 (34%), Positives = 232/433 (53%), Gaps = 15/433 (3%)

Query: 68  HAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV 127
           H  + K G+  +  ++  L+ ++ +CG + +A ++FDE+  R L ++N MI+GY K G  
Sbjct: 151 HCLVFKAGLDGDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFT 210

Query: 128 EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV 187
           +E++ L  ++   G  PD  T   +L A   C     L   LGR V   +L+  ++ +  
Sbjct: 211 KEAIGLFMEMREEGFEPDEMTLVSVLGA---CGDLGDL--GLGRWVEGFVLEKKMEVNSY 265

Query: 188 LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKD 247
           + +AL+D Y K G    AR VFD M  K+V+   ++I+G+   G   +A  +F    E  
Sbjct: 266 MGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAG 325

Query: 248 -----IVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
                + +   +    +I      K +E H    +     DV + SAL+DMYAKCG +DD
Sbjct: 326 PHPDRVTMIEVLSACSTIGALDLGKWVETHAS--EKGLQHDVYVASALIDMYAKCGSLDD 383

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE--CCVQPNYVTFLGALSAC 360
           A RVF+ M  KN  +W +MI     +G   +AL LF  M +    VQPN +TF+G LSAC
Sbjct: 384 AVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSAC 443

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            HAGLVD+GR++FESM   + + PK+EHY+CMVDL  RAG L +A   + +MP KP+  V
Sbjct: 444 VHAGLVDEGRQLFESMNLSFGLVPKVEHYSCMVDLCARAGLLYEAWDLIKKMPGKPDEIV 503

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
             +LL +C+   + ++         ++  ++  G YV  S   A   +WD   ++R  M+
Sbjct: 504 LGSLLGACQRRRNADVGERVIQLFLEMELSN-SGNYVISSKIYANMRRWDDSAKMRVLMR 562

Query: 481 LRGVLKDTGCSWV 493
             GV K  GCSW+
Sbjct: 563 QCGVSKTPGCSWI 575



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 121/428 (28%), Positives = 211/428 (49%), Gaps = 29/428 (6%)

Query: 66  KIHAHITKTGV-KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           +IHA +    + KPN  +S    I+ LK   L YA  +F++L +  + A+N M+ G    
Sbjct: 51  QIHAQMLINSIPKPNFLLS---KIIDLK--DLAYASLVFNQLTKPNIYAFNVMLRGLATT 105

Query: 125 -GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
             + +  + L  KL S G + + +T+  +  A    R  V      G++ H  + K  + 
Sbjct: 106 WKKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRGLVH-----GKIGHCLVFKAGLD 160

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D+ +  +L+  Y + G+  +AR VFD M +++++   SMISG+   GF ++A  +F + 
Sbjct: 161 GDEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEM 220

Query: 244 VEKD--------IVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
            E+         + V  A  +   + +    +   +  ++  N +     +GSAL+DMY 
Sbjct: 221 REEGFEPDEMTLVSVLGACGDLGDLGLGRWVEGFVLEKKMEVNSY-----MGSALIDMYG 275

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KCG +  ARRVFD M  K+V TW ++I GY +NG  N+A+ LF  M+E    P+ VT + 
Sbjct: 276 KCGDLISARRVFDSMPNKDVVTWNAIITGYAQNGASNEAIVLFNGMREAGPHPDRVTMIE 335

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            LSAC   G +D G+ + E+   +  ++  +   + ++D+  + GSL+ A++    MP K
Sbjct: 336 VLSACSTIGALDLGKWV-ETHASEKGLQHDVYVASALIDMYAKCGSLDDAVRVFESMPHK 394

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG--AYVALSNTLAAAGKWDSVT 473
            N   W A++S+   H   + A      + K N   +P    ++ + +    AG  D   
Sbjct: 395 -NEVSWNAMISALAFHGQAQEALSLFRRMSKDNGTVQPNDITFIGVLSACVHAGLVDEGR 453

Query: 474 ELREKMKL 481
           +L E M L
Sbjct: 454 QLFESMNL 461



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 73/266 (27%), Positives = 127/266 (47%), Gaps = 14/266 (5%)

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
           +NL + +HAQ+L   +   + L + ++D        +YA +VF+ + + N+     M+ G
Sbjct: 46  KNLLKQIHAQMLINSIPKPNFLLSKIIDL----KDLAYASLVFNQLTKPNIYAFNVMLRG 101

Query: 227 FMSQGFVED-AEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE---VHCQLIKNVFFE 282
             +     D   E++ K     +   N       I+    R  +     HC + K     
Sbjct: 102 LATTWKKYDFCVELYYKLKSLGLKANNFTYPFLFIACGNVRGLVHGKIGHCLVFKAGLDG 161

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           D  +  +L+ MYA+CG++  AR+VFD M  +++ +W SMI GY K G   +A+ LF  M+
Sbjct: 162 DEYVNHSLITMYARCGEMGFARKVFDEMGDRDLVSWNSMISGYSKMGFTKEAIGLFMEMR 221

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
           E   +P+ +T +  L ACG  G +  GR + E    +  M+      + ++D+ G+ G L
Sbjct: 222 EEGFEPDEMTLVSVLGACGDLGDLGLGRWV-EGFVLEKKMEVNSYMGSALIDMYGKCGDL 280

Query: 403 EQALKFVLEMPEKPNSDV--WAALLS 426
             A +    M   PN DV  W A+++
Sbjct: 281 ISARRVFDSM---PNKDVVTWNAIIT 303



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/262 (26%), Positives = 120/262 (45%), Gaps = 23/262 (8%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +   + +  ++ N+ +   L+ ++ KCG L  A ++FD +P + +  +N +I GY +
Sbjct: 248 GRWVEGFVLEKKMEVNSYMGSALIDMYGKCGDLISARRVFDSMPNKDVVTWNAIITGYAQ 307

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG   E++ L   +  +G  PD  T   +L A   C +   L  +LG+ V     +  ++
Sbjct: 308 NGASNEAIVLFNGMREAGPHPDRVTMIEVLSA---CSTIGAL--DLGKWVETHASEKGLQ 362

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  + +AL+D Y K G    A  VF+ M  KN +   +MIS     G  ++A  +FR+ 
Sbjct: 363 HDVYVASALIDMYAKCGSLDDAVRVFESMPHKNEVSWNAMISALAFHGQAQEALSLFRR- 421

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKN--VFFEDVKLG----------SALV 291
           + KD    N  ++   I+      A  VH  L+      FE + L           S +V
Sbjct: 422 MSKD----NGTVQPNDITFIGVLSAC-VHAGLVDEGRQLFESMNLSFGLVPKVEHYSCMV 476

Query: 292 DMYAKCGKIDDARRVFDHMQQK 313
           D+ A+ G + +A  +   M  K
Sbjct: 477 DLCARAGLLYEAWDLIKKMPGK 498


>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
          Length = 735

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 144/454 (31%), Positives = 241/454 (53%), Gaps = 18/454 (3%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L+A S+P  L           G ++H  I K G+    ++   L+ ++ K G +  A  +
Sbjct: 227 LSAVSVPLGL---------LMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHV 277

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           F+   +R    ++ MI GY +NG+ + ++S+  ++ ++G  P  +TF  +L AS+   + 
Sbjct: 278 FESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGAL 337

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
                 +G+  H  ++K   +    + +ALVD Y K G  + A+  FD + E +++  T+
Sbjct: 338 A-----VGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTA 392

Query: 223 MISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEG---YSISIETARKALEVHCQLIKNV 279
           M+SG +  G  E+A  ++ +  ++ I+   + I         I       ++H Q++K  
Sbjct: 393 MVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYG 452

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
                 +GSAL  MY+KCG ++D   VF  +  ++V  W S+I G+ +NG  N AL+LF 
Sbjct: 453 LGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFE 512

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
            M+     P+ +TF+  L AC H GLVD+G E F  M +DY + P+++HYACMVD+L RA
Sbjct: 513 EMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRA 572

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVAL 459
           G L++A  F+  +     + +W  +L +CR   D ++   A   + +L   D   AY+ L
Sbjct: 573 GMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTGD-SSAYILL 631

Query: 460 SNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           SN  A+  KW+ V  +R  M+LRGV KD GCSWV
Sbjct: 632 SNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWV 665



 Score =  125 bits (314), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 169/354 (47%), Gaps = 15/354 (4%)

Query: 79  NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLV 138
           N  +   LL ++ K G +  A ++FD +PQR   +++ M+AGY      EE+  L R ++
Sbjct: 152 NVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLML 211

Query: 139 SS--GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196
                E+ + +  + +L A +     VPL   +G  +H  I+K  +     +  +LV  Y
Sbjct: 212 EECPSEKSE-FVATAVLSAVS-----VPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMY 265

Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE 256
            K G    A  VF+   E+N I  ++MI+G+   G  + A  +F +              
Sbjct: 266 AKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFV 325

Query: 257 GYSISIETARKALEV----HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ 312
           G  ++  +   AL V    H  ++K  F   + + SALVDMYAKCG I DA+  FD + +
Sbjct: 326 GV-LNASSDLGALAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYE 384

Query: 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
            ++  WT+M+ G+ +NG   +AL L+  M +  + P+  T    L AC     ++ G+++
Sbjct: 385 VDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQL 444

Query: 373 FESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
              + + Y +       + +  +  + G+LE  +     +P++ +   W +++S
Sbjct: 445 HTQIVK-YGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDR-DVIAWNSIIS 496


>gi|224134663|ref|XP_002327460.1| predicted protein [Populus trichocarpa]
 gi|222836014|gb|EEE74435.1| predicted protein [Populus trichocarpa]
          Length = 540

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 152/464 (32%), Positives = 250/464 (53%), Gaps = 45/464 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGA---LKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +I +H+T T    +   + K++ LH    A   L YA ++F  L  ++   +N M+  ++
Sbjct: 29  QIQSHLTVTATLKDPYAAAKIISLHAHSNARSSLFYAERLFLCLQNKSTFIWNTMMQAFV 88

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +  +   + SL + ++ S   P+ +TFS +++A   C     L   +G   H Q++K   
Sbjct: 89  EKNEAVRAFSLYKHMLESNYLPNNFTFSFVIRA---CIDVFNL--QMGLCFHGQVVKFGW 143

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           ++ D +   L+  Y   G    AR +FDM ++++V+  T +ISG+++ G V  A E+F +
Sbjct: 144 ESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTCLISGYLNSGQVLIARELFDR 203

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALEV------------------------------- 271
             EK+ V + A+I GY + I   ++ALEV                               
Sbjct: 204 MPEKNPVSWGALIAGY-VRIGFFKEALEVFYDMQVSGFRLNRASIVGALTACAFLGALDQ 262

Query: 272 ----HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
               H  + ++    D  LG+AL+DMYAKCG I+ A  VFD M  ++V+ +T +I G   
Sbjct: 263 GRWIHAYVKRHHMSLDRMLGTALIDMYAKCGCIEMACSVFDEMDDRDVYAFTCLISGLAN 322

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           +     A++LF  MQ+  V PN VTF+  L+AC   G+VD+G  IFESM   Y ++P+++
Sbjct: 323 HDKSEAAIDLFNRMQDEGVVPNEVTFVCVLNACSRMGMVDEGLRIFESMSNRYVIEPQIQ 382

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           HY C+VDLLGRAG +E+A + V EMP +P+S    ALL +CR+H DV++     + + + 
Sbjct: 383 HYGCLVDLLGRAGKIEEAKQVVREMPLQPDSYTLGALLDACRVHGDVQLGEEMVDSLVQ- 441

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
              D  G +V LSN  A+A KW+  +++R+KM+ + + K  GCS
Sbjct: 442 RCLDHGGVHVLLSNMYASADKWEDASKIRKKMEDKNIRKLPGCS 485



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 143/346 (41%), Gaps = 70/346 (20%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           GL  H  + K G +    +   L+ L+  CG +  A  MFD   +R +  +  +I+GYL 
Sbjct: 131 GLCFHGQVVKFGWESYDFVQNGLIHLYANCGFMDLARNMFDMSIKRDVVTWTCLISGYLN 190

Query: 124 NGQVEESLSLVRKL-----VSSGERPDGYT------------FSM-----------ILKA 155
           +GQV  +  L  ++     VS G    GY             + M           I+ A
Sbjct: 191 SGQVLIARELFDRMPEKNPVSWGALIAGYVRIGFFKEALEVFYDMQVSGFRLNRASIVGA 250

Query: 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
            T C     L +  GR +HA + +  +  D +L TAL+D Y K G    A  VFD M ++
Sbjct: 251 LTACAFLGALDQ--GRWIHAYVKRHHMSLDRMLGTALIDMYAKCGCIEMACSVFDEMDDR 308

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQL 275
           +V   T +ISG  +    E A ++F +  ++ +V                          
Sbjct: 309 DVYAFTCLISGLANHDKSEAAIDLFNRMQDEGVVP------------------------- 343

Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT-----WTSMIDGYGKNGN 330
              V F        +++  ++ G +D+  R+F+ M  + V       +  ++D  G+ G 
Sbjct: 344 -NEVTF------VCVLNACSRMGMVDEGLRIFESMSNRYVIEPQIQHYGCLVDLLGRAGK 396

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM 376
             +A ++   ++E  +QP+  T    L AC   G V  G E+ +S+
Sbjct: 397 IEEAKQV---VREMPLQPDSYTLGALLDACRVHGDVQLGEEMVDSL 439



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 97/215 (45%), Gaps = 18/215 (8%)

Query: 35  NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           N  S+   LTA +   AL           G  IHA++ +  +  +  +   L+ ++ KCG
Sbjct: 243 NRASIVGALTACAFLGALDQ---------GRWIHAYVKRHHMSLDRMLGTALIDMYAKCG 293

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
            ++ A  +FDE+  R + A+  +I+G   + + E ++ L  ++   G  P+  TF  +L 
Sbjct: 294 CIEMACSVFDEMDDRDVYAFTCLISGLANHDKSEAAIDLFNRMQDEGVVPNEVTFVCVLN 353

Query: 155 ASTCCRSNVPLP--RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR-IVFDM 211
           A  C R  +     R    M +  +++  ++     Y  LVD   + GK   A+ +V +M
Sbjct: 354 A--CSRMGMVDEGLRIFESMSNRYVIEPQIQH----YGCLVDLLGRAGKIEEAKQVVREM 407

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
            L+ +     +++      G V+  EE+    V++
Sbjct: 408 PLQPDSYTLGALLDACRVHGDVQLGEEMVDSLVQR 442


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 144/451 (31%), Positives = 254/451 (56%), Gaps = 13/451 (2%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
            SL SA+ H         G ++HA+  K  +  +T +   L+ +++KC  ++Y+  +FD 
Sbjct: 370 VSLSSAVGHL---GWLLNGKEVHAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDR 426

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           +  +   ++  +I  Y ++ +  E+L + R+    G + D      IL+A +   + +  
Sbjct: 427 MRIKDHISWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETIL-- 484

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
              L + +H   ++  +  D V+   ++D Y + G+  ++  +F+ + +K+++  TSMI+
Sbjct: 485 ---LAKQLHCYAIRNGL-LDLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMIN 540

Query: 226 GFMSQGFVEDAEEIFRKTVEKDI---VVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
            + + G + +A  +F +    D+    V    I G    + +  K  EVH  LI+  F  
Sbjct: 541 CYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEVHGFLIRRNFHM 600

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           +  + S+LVDMY+ CG +  A +VF+ ++ K++  WT+MI+  G +G+  QA++LF  M 
Sbjct: 601 EEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRML 660

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
           +  V P++V+FL  L AC H+ LV++G+   + M   Y ++P  EHYAC+VDLLGR+G  
Sbjct: 661 QTGVTPDHVSFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQT 720

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
           E+A +F+  MP KP S VW +LL +CR+H + E+A +AAN + +L   D PG YV +SN 
Sbjct: 721 EEAYEFIKSMPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEP-DNPGNYVLVSNV 779

Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            A  GKW++  E+R ++  RG+ KD  CSW+
Sbjct: 780 FAEMGKWNNAKEVRARISERGLRKDPACSWI 810



 Score =  141 bits (355), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 171/334 (51%), Gaps = 22/334 (6%)

Query: 64  GLKIHAHITKTGVKPNTN--ISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           G+++HAH   TG     +  ++ KLL ++ KCG +  A  +FD +  RT+ ++N +I  Y
Sbjct: 77  GVQVHAHAVATGSLEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAY 136

Query: 122 LKNGQVEESLSLVRKL---VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
           L +G   E+L + R +    +SG  PDG T + +LKAS      V      G  VH   +
Sbjct: 137 LSSGSACEALGVYRAMRLSAASGVAPDGCTLASVLKAS-----GVEGDGRCGCEVHGLAV 191

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE-KNVICSTSMISGFMSQGFVEDAE 237
           K  +     +  AL+  Y K G    A  VF++M + ++V    SMISG +  G    A 
Sbjct: 192 KHGLDRSTFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQAL 251

Query: 238 EIFRKTVEKDIVVYNA--MIEGYSISIETARKAL--EVHCQLIKNVFFEDVKLGSALVDM 293
           ++FR  +++ ++  N+   +    +  E A+  L  E+H  L+K+    +++  + LV M
Sbjct: 252 DLFRG-MQRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCNALLV-M 309

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           Y KCG++D A RVF  + +K+  +W SM+  Y +NG   +A+E    M     QP++   
Sbjct: 310 YTKCGRVDSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACI 369

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           +   SA GH G +  G+E+       Y++K +++
Sbjct: 370 VSLSSAVGHLGWLLNGKEVHA-----YAIKQRLD 398


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  255 bits (652), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 150/439 (34%), Positives = 244/439 (55%), Gaps = 15/439 (3%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G ++HA+  K  +  ++ ++  L+ ++ KC  L  A ++FD      +  +N MI GY 
Sbjct: 368 FGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYS 427

Query: 123 KNG---QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           + G   ++ E+L++ R +     RP   TF  +L+AS    S       L + +H  + K
Sbjct: 428 RLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTS-----LGLSKQIHGLMFK 482

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
             +  D    +AL+D Y        +R+VFD M  K+++   SM +G++ Q   E+A  +
Sbjct: 483 YGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNL 542

Query: 240 FRK---TVEK-DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
           F +   + E+ D   +  M+     ++ + +   E HCQL+K     +  + +AL+DMYA
Sbjct: 543 FLELQLSRERPDEFTFANMVTAAG-NLASVQLGQEFHCQLLKRGLECNPYITNALLDMYA 601

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KCG  +DA + FD    ++V  W S+I  Y  +G   +AL++   M    ++PNY+TF+G
Sbjct: 602 KCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVG 661

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            LSAC HAGLV+ G + FE M R + ++P+ EHY CMV LLGRAG L +A + + +MP K
Sbjct: 662 VLSACSHAGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTK 720

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
           P + VW +LLS C    +VE+A  AA E+  L+     G++  LSN  A+ G W    ++
Sbjct: 721 PAAIVWRSLLSGCAKAGNVELAEHAA-EMAILSDPKDSGSFTMLSNIYASKGMWTEAKKV 779

Query: 476 REKMKLRGVLKDTGCSWVG 494
           RE+MK+ GV+K+ G SW+G
Sbjct: 780 RERMKVEGVVKEPGRSWIG 798



 Score =  135 bits (341), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 85/326 (26%), Positives = 169/326 (51%), Gaps = 9/326 (2%)

Query: 52  LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL 111
           LQ   + D   Y   +H  I   G++ +T +S  L+ L+ + G + YA ++F+++P+R L
Sbjct: 51  LQLRASDDLLHYQNVVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNL 110

Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSS-GERPDGYTFSMILKASTCCRSNVPLPRNLG 170
            +++ M++    +G  EESL +  +   +  + P+ Y  S  ++A   C       R + 
Sbjct: 111 VSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQA---CSGLDGRGRWMV 167

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
             + + ++K     D  + T L+D Y+K G   YAR+VFD + EK+ +  T+MISG +  
Sbjct: 168 FQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKM 227

Query: 231 GFVEDAEEIFRKTVEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
           G    + ++F + +E ++V    + + ++   SI +       ++H  +++     D  L
Sbjct: 228 GRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSI-LPFLEGGKQIHAHILRYGLEMDASL 286

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
            + L+D Y KCG++  A ++F+ M  KN+ +WT+++ GY +N    +A+ELF  M +  +
Sbjct: 287 MNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGL 346

Query: 347 QPNYVTFLGALSACGHAGLVDKGREI 372
           +P+       L++C     +  G ++
Sbjct: 347 KPDMYACSSILTSCASLHALGFGTQV 372



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 77/261 (29%), Positives = 126/261 (48%), Gaps = 8/261 (3%)

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
           +VH QI+   ++ D  L   L++ Y + G   YAR VF+ M E+N++  ++M+S     G
Sbjct: 65  VVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHG 124

Query: 232 FVEDAEEIF------RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
             E++  +F      RK    + ++ + +     +         ++   L+K+ F  DV 
Sbjct: 125 IYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVY 184

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           +G+ L+D Y K G ID AR VFD + +K+  TWT+MI G  K G    +L+LF  + E  
Sbjct: 185 VGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDN 244

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
           V P+       LSAC     ++ G++I   + R Y ++        ++D   + G +  A
Sbjct: 245 VVPDGYILSTVLSACSILPFLEGGKQIHAHILR-YGLEMDASLMNVLIDSYVKCGRVIAA 303

Query: 406 LKFVLEMPEKPNSDVWAALLS 426
            K    MP K N   W  LLS
Sbjct: 304 HKLFNGMPNK-NIISWTTLLS 323


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  255 bits (652), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 150/474 (31%), Positives = 253/474 (53%), Gaps = 32/474 (6%)

Query: 35  NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           N  + S  L A  L +AL+          GL+IH    K G +    +   L+ ++ KCG
Sbjct: 477 NEFTFSTNLKACGLLNALEK---------GLQIHGFCLKIGFEMMVEVGNSLVDMYSKCG 527

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG--ERPDGYTFSMI 152
            +  A ++F  +  R+L ++N MIAG++  G   ++L     +  +   ERPD +T + +
Sbjct: 528 RINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSL 587

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVK--ADDVLYTALVDSYVKGGKTSYARIVFD 210
           LKA  C  + +      G+ +H  +++      +   +  +LVD YVK G    AR  FD
Sbjct: 588 LKA--CSSTGMIYA---GKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFD 642

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS--------I 262
            + EK +I  +S+I G+  +G   +A  +F++  E      N+ I+ +++S         
Sbjct: 643 QIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQE-----LNSQIDSFALSSIIGVFADF 697

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
              R+  ++    +K     +  + +++VDMY KCG +D+A + F  MQ K+V +WT +I
Sbjct: 698 ALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVI 757

Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382
            GYGK+G   +++ +F  M    ++P+ V +L  LSAC H+G++ +G E+F  +   + +
Sbjct: 758 TGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGI 817

Query: 383 KPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAAN 442
           KP++EHYAC+VDLLGRAG L++A   +  MP KPN  +W  LLS CR+H D+E+      
Sbjct: 818 KPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGK 877

Query: 443 EIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
            + +++A + P  YV +SN    AG W+     RE   ++G+ K+ G SWV  E
Sbjct: 878 ILLRIDAKN-PANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIE 930



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 103/415 (24%), Positives = 200/415 (48%), Gaps = 22/415 (5%)

Query: 77  KPNTNI--SIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV 134
           KP  N+  S  L+ ++ KC     A ++FD +P+R + +++ +++G++ NG ++ SLSL 
Sbjct: 407 KPWLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLF 466

Query: 135 RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVD 194
            ++   G  P+ +TFS  LKA   C     L + L   +H   LK   +    +  +LVD
Sbjct: 467 SEMGRQGIYPNEFTFSTNLKA---CGLLNALEKGL--QIHGFCLKIGFEMMVEVGNSLVD 521

Query: 195 SYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI------ 248
            Y K G+ + A  VF  ++++++I   +MI+GF+  G+   A + F    E +I      
Sbjct: 522 MYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDE 581

Query: 249 VVYNAMIEGYSISIETARKALEVHCQLIKNVFF--EDVKLGSALVDMYAKCGKIDDARRV 306
               ++++  S S        ++H  L+++ F       +  +LVD+Y KCG +  AR+ 
Sbjct: 582 FTLTSLLKACS-STGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKA 640

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           FD +++K + +W+S+I GY + G   +A+ LF  +QE   Q +       +       L+
Sbjct: 641 FDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALL 700

Query: 367 DKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV--WAAL 424
            +G+++ +++        +      +VD+  + G +++A K   EM  K   DV  W  +
Sbjct: 701 RQGKQM-QALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLK---DVISWTVV 756

Query: 425 LSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           ++    H   + +     E+ + N       Y+A+ +  + +G      EL  K+
Sbjct: 757 ITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKL 811


>gi|219363695|ref|NP_001136685.1| uncharacterized protein LOC100216817 [Zea mays]
 gi|194696634|gb|ACF82401.1| unknown [Zea mays]
          Length = 615

 Score =  255 bits (652), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 151/446 (33%), Positives = 239/446 (53%), Gaps = 36/446 (8%)

Query: 60  TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIA 119
           TP  G   HAH+ K G   +T +   L+  + K   L  A ++FDE+  R + ++N  +A
Sbjct: 146 TPVRG--AHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMA 203

Query: 120 GYLKNGQVEESLSLVRKL-----VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH 174
             ++ G+V+ + S+  ++     VS     DGY      KA    ++     R  GR V 
Sbjct: 204 AMVRQGEVDAARSMFDEMPEKDTVSWNTMLDGYA-----KAGEAEKAFELFQRMPGRNV- 257

Query: 175 AQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVE 234
                       V ++ +V +Y K G    AR++FD M  KN++  T M+S    +G VE
Sbjct: 258 ------------VSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVE 305

Query: 235 DAEEIFRK----TVEKDIVVYNAMIEGYSISIETARKAL--EVHCQLIKNVFFEDVKLGS 288
           +A  +F +     +E D++   A++   +   E+   AL   +H  + +        + +
Sbjct: 306 EAGRLFTEMMDAAIELDVI---AVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCN 362

Query: 289 ALVDMYAKCGKIDDARRVFD-HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347
           AL+DM+ KCG ++ A  +FD  + +K++ +W  +I G+  +G   +ALELF  M++    
Sbjct: 363 ALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFH 422

Query: 348 PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALK 407
           P+ VT +  LSAC H GLV++GR  F +ME DY +KP++EHY CMVDLLGR G +++A+ 
Sbjct: 423 PDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVD 482

Query: 408 FVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG 467
            +  MP +PN  +W +LLS+CRLH +VE A +A NE+  L  +   G Y  LSN  A AG
Sbjct: 483 MIKRMPWEPNEVIWGSLLSACRLHKNVEYAELAVNELSNLQPSS-AGNYAVLSNIYAEAG 541

Query: 468 KWDSVTELREKMKLRGVLKDTGCSWV 493
           KW  + + R +MK  G  K  G SW+
Sbjct: 542 KWSDMAKARVQMKGTGSQKTAGSSWI 567



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 66/289 (22%), Positives = 122/289 (42%), Gaps = 27/289 (9%)

Query: 165 LPRNLGRM-----VHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML------ 213
           LP  L R+     +HAQ+LK  +  D    + L+ SY    +    R VF   +      
Sbjct: 32  LPHGLPRLRHVQELHAQLLKQGLHRDPHTASKLIASYALLRRVPACRCVFSAAVALPNSP 91

Query: 214 --EKNVICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIVVYNAMIEGYSISIETARKAL 269
                 + + +++  +        A  +F      ++    Y+ +I+  + +  T  +  
Sbjct: 92  FPSSTTLLTKTLLRAYALNSLPHAALAVFLDVPLRQRGTFTYSFLIKALAAAGLTPVRG- 150

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
             H  ++K    ED  +G+AL+D Y+K   + DA++VFD M  ++V +W + +    + G
Sbjct: 151 -AHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQG 209

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
             + A  +F  M E     + V++   L     AG  +K  E+F+ M         +  +
Sbjct: 210 EVDAARSMFDEMPE----KDTVSWNTMLDGYAKAGEAEKAFELFQRMP-----GRNVVSW 260

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMAN 438
           + +V    + G +E A     +MP K N   W  ++S+C     VE A 
Sbjct: 261 STVVSAYCKKGDMEMARVIFDKMPAK-NLVTWTIMVSACAQKGLVEEAG 308


>gi|414869795|tpg|DAA48352.1| TPA: hypothetical protein ZEAMMB73_382586 [Zea mays]
          Length = 687

 Score =  255 bits (652), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 151/446 (33%), Positives = 239/446 (53%), Gaps = 36/446 (8%)

Query: 60  TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIA 119
           TP  G   HAH+ K G   +T +   L+  + K   L  A ++FDE+  R + ++N  +A
Sbjct: 218 TPVRG--AHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMA 275

Query: 120 GYLKNGQVEESLSLVRKL-----VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH 174
             ++ G+V+ + S+  ++     VS     DGY      KA    ++     R  GR V 
Sbjct: 276 AMVRQGEVDAARSMFDEMPEKDTVSWNTMLDGYA-----KAGEAEKAFELFQRMPGRNV- 329

Query: 175 AQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVE 234
                       V ++ +V +Y K G    AR++FD M  KN++  T M+S    +G VE
Sbjct: 330 ------------VSWSTVVSAYCKKGDMEMARVIFDKMPAKNLVTWTIMVSACAQKGLVE 377

Query: 235 DAEEIFRK----TVEKDIVVYNAMIEGYSISIETARKAL--EVHCQLIKNVFFEDVKLGS 288
           +A  +F +     +E D++   A++   +   E+   AL   +H  + +        + +
Sbjct: 378 EAGRLFTEMMDAAIELDVI---AVVSILAACAESGSLALGKRIHRHVRQRKLSRSTLVCN 434

Query: 289 ALVDMYAKCGKIDDARRVFD-HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347
           AL+DM+ KCG ++ A  +FD  + +K++ +W  +I G+  +G   +ALELF  M++    
Sbjct: 435 ALMDMFCKCGCVNRADYIFDTEIVEKDLVSWNIIIGGFAMHGPGEKALELFAQMKQQGFH 494

Query: 348 PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALK 407
           P+ VT +  LSAC H GLV++GR  F +ME DY +KP++EHY CMVDLLGR G +++A+ 
Sbjct: 495 PDAVTLINVLSACTHMGLVEEGRRFFANMETDYGIKPQIEHYGCMVDLLGRGGLIKEAVD 554

Query: 408 FVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG 467
            +  MP +PN  +W +LLS+CRLH +VE A +A NE+  L  +   G Y  LSN  A AG
Sbjct: 555 MIKRMPWEPNEVIWGSLLSACRLHKNVEYAELAVNELSNLQPSS-AGNYAVLSNIYAEAG 613

Query: 468 KWDSVTELREKMKLRGVLKDTGCSWV 493
           KW  + + R +MK  G  K  G SW+
Sbjct: 614 KWSDMAKARVQMKGTGSQKTAGSSWI 639



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 68/288 (23%), Positives = 123/288 (42%), Gaps = 27/288 (9%)

Query: 165 LPRNLGRM-----VHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFD--MMLEKNV 217
           LP  L R+     +HAQ+LK  +  D    + L+ SY    +    R VF   + L  + 
Sbjct: 104 LPHGLPRLRHVQELHAQLLKQGLHRDPHTASKLIASYALLRRVPACRCVFSAAVALPNSP 163

Query: 218 ICSTSMIS------GFMSQGFVEDAEEIFRKTV--EKDIVVYNAMIEGYSISIETARKAL 269
             S++ +        +        A  +F      ++    Y+ +I+  + +  T  +  
Sbjct: 164 FPSSTTLLTKTLLRAYALNSLPHAALAVFLDVPLRQRGTFTYSFLIKALAAAGLTPVRG- 222

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
             H  ++K    ED  +G+AL+D Y+K   + DA++VFD M  ++V +W + +    + G
Sbjct: 223 -AHAHVVKLGSAEDTFVGNALIDAYSKNQGLSDAKKVFDEMTTRDVVSWNTAMAAMVRQG 281

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
             + A  +F  M E     + V++   L     AG  +K  E+F+ M     +      +
Sbjct: 282 EVDAARSMFDEMPE----KDTVSWNTMLDGYAKAGEAEKAFELFQRMPGRNVVS-----W 332

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           + +V    + G +E A     +MP K N   W  ++S+C     VE A
Sbjct: 333 STVVSAYCKKGDMEMARVIFDKMPAK-NLVTWTIMVSACAQKGLVEEA 379


>gi|359489007|ref|XP_002278681.2| PREDICTED: pentatricopeptide repeat-containing protein
           At1g74630-like [Vitis vinifera]
          Length = 663

 Score =  255 bits (652), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 156/436 (35%), Positives = 230/436 (52%), Gaps = 36/436 (8%)

Query: 94  GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
           G L YA ++F ++ Q     YN +I GY K+    +S+ L  ++  +   PDG+TF+ +L
Sbjct: 230 GCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLL 289

Query: 154 KASTCCRSNVPL----------PRNLGRMVHA--------------------QILKCDVK 183
           K  +  R ++PL             LG   H                     Q+    V 
Sbjct: 290 KGRSRMRIDLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVG 349

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           AD V ++ LV ++V+ G+   AR VF  M E++V+  T M+SG+       +A E+FR+ 
Sbjct: 350 ADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREM 409

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               V  D V   ++I   + S+       EVH  + +N F   V L +AL+DMYAKCG 
Sbjct: 410 RDVGVRPDEVAMVSVISACT-SLGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGC 468

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +D A +VF++M++K++ TW SMI     +GN   A  +F +M    ++P+ VTFL  L+A
Sbjct: 469 MDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRPDGVTFLALLTA 528

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
             H G VD G  +FESM+RDY ++  +EHY CMVD+LGRAG LE+A K +  M    N  
Sbjct: 529 YTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKLITSMSMPCNDV 588

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW ALL++CR++ DVEM      ++ +L   D  G Y+ L +   AAG+     ELR  M
Sbjct: 589 VWGALLAACRIYGDVEMGERVLKKLIELKP-DEGGYYILLRDIYVAAGRRAEAIELRRAM 647

Query: 480 KLRGVLKDTGCSWVGT 495
            + G  K  GCSWVG 
Sbjct: 648 DVNGAKKTLGCSWVGA 663



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 143/329 (43%), Gaps = 49/329 (14%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           L++ H++ G L+ A Q+F E+P+R + ++  M++GY +  +  E+L L R++   G RPD
Sbjct: 358 LVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPD 417

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
                 ++ A   C S   L    G  VH  I +        L  AL+D Y K G    A
Sbjct: 418 EVAMVSVISA---CTSLGDL--ETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLA 472

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETA 265
             VF+ M  K++I   SMIS   + G  EDA  +F       +++Y+ +           
Sbjct: 473 WQVFNNMERKSLITWNSMISACANHGNAEDAFRVF------TLMLYSGIRP--------- 517

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ-----QKNVFTWTS 320
                        V F       AL+  Y   G +DD   +F+ MQ     +  V  +  
Sbjct: 518 -----------DGVTF------LALLTAYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGC 560

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
           M+D  G+ G   +A +L   M   C   N V +   L+AC   G V+ G  + + +    
Sbjct: 561 MVDMLGRAGRLEEAYKLITSMSMPC---NDVVWGALLAACRIYGDVEMGERVLKKL---I 614

Query: 381 SMKP-KMEHYACMVDLLGRAGSLEQALKF 408
            +KP +  +Y  + D+   AG   +A++ 
Sbjct: 615 ELKPDEGGYYILLRDIYVAAGRRAEAIEL 643



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 11/186 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H +I + G     ++   L+ ++ KCG +  A Q+F+ + +++L  +N MI+    
Sbjct: 437 GFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISACAN 496

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKAST---CCRSNVPLPRNLGRMVHAQILKC 180
           +G  E++  +   ++ SG RPDG TF  +L A T          L  ++ R         
Sbjct: 497 HGNAEDAFRVFTLMLYSGIRPDGVTFLALLTAYTHKGWVDDGYGLFESMQR-------DY 549

Query: 181 DVKADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
            V+A    Y  +VD   + G+   A +++  M +  N +   ++++     G VE  E +
Sbjct: 550 GVEAGVEHYGCMVDMLGRAGRLEEAYKLITSMSMPCNDVVWGALLAACRIYGDVEMGERV 609

Query: 240 FRKTVE 245
            +K +E
Sbjct: 610 LKKLIE 615


>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
          Length = 700

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 153/434 (35%), Positives = 236/434 (54%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G   HA + K G   +  ++  L+ ++ K   ++   + F E+ +R L ++N +I GY  
Sbjct: 266 GRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSL 325

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G+ EE+L +  +L S G  PD +TF  +   S+C  S+       G  VH   +K  + 
Sbjct: 326 MGKYEEALRVYSQLQSEGMEPDSFTFVGLF--SSCSVSSTVAE---GAQVHVHSVKFGLD 380

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
           +D  +  ++V+ Y K G T  A   F+ +   N +C   +ISGF   G  E A   F   
Sbjct: 381 SDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSVCWAGIISGFAQNGEGEKALMQFCKM 440

Query: 241 RKTVEK-DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           RK ++K D    +++I+  S S     +   +H  ++K+     + +GSA++DMY+KCG 
Sbjct: 441 RKFIDKTDEFSSSSVIKAVS-SWAAVEQGRHLHAHVMKSGLDCTIYVGSAVIDMYSKCGM 499

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ++DA++VF  M +KNV +W SMI GY +NG   +AL LF  M    + P  VTF+G L A
Sbjct: 500 VEDAQKVFSVMPEKNVVSWNSMITGYAQNGFCKEALLLFQEMTSSGILPTAVTFVGILFA 559

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C HAGLV++GR  +  M  +Y + P MEH  CMVDLLGRAG LE+A  F+L         
Sbjct: 560 CSHAGLVEEGRNFYNLMVHNYGIPPSMEHCTCMVDLLGRAGYLEEAEAFLLSSSFSKEPG 619

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +W +LLS+C +H + ++ + AA     L  +    +Y ALSN  A+   W  V+ +R+ M
Sbjct: 620 IWGSLLSACGVHKNSDVGSRAAQHCLFLEPH-YSSSYTALSNIYASKELWSEVSRIRDLM 678

Query: 480 KLRGVLKDTGCSWV 493
           K  GV K+ GCSW+
Sbjct: 679 KDMGVEKEPGCSWI 692



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 100/367 (27%), Positives = 179/367 (48%), Gaps = 12/367 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H +  K G   +  +S   + ++ KCG L  AG  FD++  + + A+N MI GY +
Sbjct: 165 GKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQ 224

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N   EE++ L  ++   G +P+  TF  +LKAST    +      +GR  HA++LK    
Sbjct: 225 NCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSDSA-----VGRCFHAKVLKLGCS 279

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  + TALVD Y K          F  M ++N++   ++I+G+   G  E+A  ++ + 
Sbjct: 280 MDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQL 339

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               +E D   +  +    S+S   A  A +VH   +K     DV +G+++V+ Y+KCG 
Sbjct: 340 QSEGMEPDSFTFVGLFSSCSVSSTVAEGA-QVHVHSVKFGLDSDVSVGNSIVNFYSKCGF 398

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
            D A   F+ + + N   W  +I G+ +NG   +AL  FC M++   + +  +    + A
Sbjct: 399 TDSALEAFESINRPNSVCWAGIISGFAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKA 458

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
                 V++GR +   + +   +   +   + ++D+  + G +E A K    MPEK N  
Sbjct: 459 VSSWAAVEQGRHLHAHVMKS-GLDCTIYVGSAVIDMYSKCGMVEDAQKVFSVMPEK-NVV 516

Query: 420 VWAALLS 426
            W ++++
Sbjct: 517 SWNSMIT 523



 Score =  135 bits (340), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 113/456 (24%), Positives = 208/456 (45%), Gaps = 46/456 (10%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           N +T ++  SA      S  P     +H  I K G      +S  L+ ++ K   +K A 
Sbjct: 40  NAITYSATISACAQ---STRPSLATSLHCLILKKGFSNQLFVSSGLISMYSKHDRIKEAR 96

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGER----PDGYTFSMILKAS 156
            +FD++P+R   ++N MIAGY + G  EE+  L   +++S E        +T + +LKA 
Sbjct: 97  FLFDDMPERDDVSWNSMIAGYSQRGLNEEACGLFCSMINSCENWKLLVSDFTLATVLKAC 156

Query: 157 ---TCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
               C R        +G+ VH   +K    +D  +  + V  Y K G    A + FD + 
Sbjct: 157 GGLGCSR--------IGKCVHGYAVKIGFDSDLFVSGSTVYMYCKCGILDMAGLAFDQIE 208

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY-------------SI 260
            K+++   +MI+G+    + E+A E+F          Y   +EG+             S 
Sbjct: 209 NKDIVAWNTMITGYAQNCYEEEAIELF----------YQMELEGFKPNDTTFCCVLKAST 258

Query: 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
           ++  +      H +++K     DV + +ALVDMY+K   I+D  R F  M ++N+ ++ +
Sbjct: 259 AMSDSAVGRCFHAKVLKLGCSMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNA 318

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
           +I GY   G   +AL ++  +Q   ++P+  TF+G  S+C  +  V +G ++       +
Sbjct: 319 LITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQV-HVHSVKF 377

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIA 440
            +   +     +V+   + G  + AL+   E   +PNS  WA ++S    + + E A + 
Sbjct: 378 GLDSDVSVGNSIVNFYSKCGFTDSALE-AFESINRPNSVCWAGIISGFAQNGEGEKALMQ 436

Query: 441 ANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
             ++ K    D+   + + S+ + A   W +V + R
Sbjct: 437 FCKMRKF--IDKTDEFSS-SSVIKAVSSWAAVEQGR 469



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 54/167 (32%), Positives = 82/167 (49%), Gaps = 9/167 (5%)

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARK 267
           MLE NV+  TS I+    +G V+ A   F    R  +E + + Y+A I   + S   +  
Sbjct: 1   MLETNVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSL- 59

Query: 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
           A  +HC ++K  F   + + S L+ MY+K  +I +AR +FD M +++  +W SMI GY +
Sbjct: 60  ATSLHCLILKKGFSNQLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQ 119

Query: 328 NGNPNQALELFCMMQECCVQPNYV----TFLGALSACGHAGLVDKGR 370
            G   +A  LFC M   C     +    T    L ACG  G    G+
Sbjct: 120 RGLNEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGK 166


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 146/450 (32%), Positives = 246/450 (54%), Gaps = 9/450 (2%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +  +AL+  I      +   +H  I KT    +  + + LL L+ + G +  A ++F+E+
Sbjct: 249 TFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEM 308

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P+  +  +++MIA + +NG   E++ L  ++  +   P+ +T S IL      + +    
Sbjct: 309 PKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCS---- 364

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
             LG  +H  ++K     D  +  AL+D Y K  K   A  +F  +  KN +   ++I G
Sbjct: 365 -GLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVG 423

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIE---GYSISIETARKALEVHCQLIKNVFFED 283
           + + G    A  +FR+ +   + V         G   S+ +    ++VH   IK    + 
Sbjct: 424 YENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKK 483

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
           V + ++L+DMYAKCG I  A+ VF+ M+  +V +W ++I GY  +G   QAL +  +M++
Sbjct: 484 VAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKD 543

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE 403
              +PN +TFLG LS C +AGL+D+G+E FESM RD+ ++P +EHY CMV LLGR+G L+
Sbjct: 544 RDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLD 603

Query: 404 QALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL 463
           +A+K +  +P +P+  +W A+LS+    ++ E A  +A EI K+N  D    YV +SN  
Sbjct: 604 KAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDE-ATYVLVSNMY 662

Query: 464 AAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           A A +W +V  +R+ MK  GV K+ G SW+
Sbjct: 663 AGAKQWANVASIRKSMKEMGVKKEPGLSWI 692



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 94/402 (23%), Positives = 180/402 (44%), Gaps = 14/402 (3%)

Query: 27  QTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKL 86
           +T    L++ DS+   L + +  + L+  I  + P     IH  I K G   +   +  L
Sbjct: 31  KTAALDLESSDSIIPGLDSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNIL 90

Query: 87  LILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDG 146
           L  ++K G  K A  +FDE+P+R   ++  +  GY      ++ + L  +L   G   + 
Sbjct: 91  LNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGY----ACQDPIGLYSRLHREGHELNP 146

Query: 147 YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR 206
           + F+  LK           P      +H+ I+K    ++  +  AL+++Y   G    AR
Sbjct: 147 HVFTSFLKLFVSLDKAEICP-----WLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSAR 201

Query: 207 IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY---SISIE 263
            VF+ +L K+++    ++S ++  G+ ED+ ++         +  N   +     SI + 
Sbjct: 202 TVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLG 261

Query: 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMID 323
               A  VH Q++K  +  D ++G  L+ +Y + G + DA +VF+ M + +V  W+ MI 
Sbjct: 262 AFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIA 321

Query: 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK 383
            + +NG  N+A++LF  M+E  V PN  T    L+ C        G ++   +       
Sbjct: 322 RFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQL-HGLVVKVGFD 380

Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
             +     ++D+  +   ++ A+K   E+  K N   W  ++
Sbjct: 381 LDIYVSNALIDVYAKCEKMDTAVKLFAELSSK-NEVSWNTVI 421



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 104/213 (48%), Gaps = 11/213 (5%)

Query: 37  DSLSNPLTAT--SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           ++L N ++ T  +  SAL    +  +   G+++H    KT       +S  L+ ++ KCG
Sbjct: 439 EALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCG 498

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
            +K+A  +F+E+    ++++N +I+GY  +G   ++L ++  +     +P+G TF  +L 
Sbjct: 499 DIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVL- 557

Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA-RIVFDMML 213
            S C  SN  L         + I    ++     YT +V    + G+   A +++  +  
Sbjct: 558 -SGC--SNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPY 614

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
           E +V+   +M+S  M+Q    + EE  R++ E+
Sbjct: 615 EPSVMIWRAMLSASMNQ----NNEEFARRSAEE 643


>gi|414591609|tpg|DAA42180.1| TPA: hypothetical protein ZEAMMB73_073969 [Zea mays]
          Length = 696

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 151/439 (34%), Positives = 241/439 (54%), Gaps = 19/439 (4%)

Query: 64  GLKIHAHITKTGVKPNTN-ISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G ++HA   + G  P+   +S   L ++ K G L  A ++FDE+P R + A+N ++   +
Sbjct: 139 GTQLHALALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMTNAV 198

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            +G+  E++     L  +G  P+  +      A   C     L  +LG   +  + KC  
Sbjct: 199 LDGRPLETVEAYFGLRGAGGMPNVVSVCAFFNA---CAGMTNL--SLGEQFYGFVAKCGF 253

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-- 240
             D  +  ++VD Y K      AR VFD M  +N +   SM+  +   G  E+A  ++  
Sbjct: 254 GKDVSVSNSVVDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFFVYLG 313

Query: 241 -RKTVEK--DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
            R+  E+  D +V + +     +      +AL  H   +++    ++ + SALVDMY KC
Sbjct: 314 ARRAGEEPTDFMVSSVLTTCAGLLGLDLGRAL--HAVAVRSCIDSNIFVASALVDMYGKC 371

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF---CMMQECCVQPNYVTFL 354
           G I+DA +VF  M Q+N+ TW +MI GY   G+ + AL +F    M QE    PNY+T +
Sbjct: 372 GGIEDAEQVFFEMPQRNLVTWNAMIGGYAHIGDAHNALSVFDKMIMGQE--TAPNYITLV 429

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             L+AC   GL  +G E+F++M+  + ++P++EHYAC+VDLL RAG  E+A K +  MP 
Sbjct: 430 NVLTACSRGGLTKEGYELFQTMKWRFGIEPRIEHYACVVDLLCRAGMEERAYKIIQGMPM 489

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
           +P+  VW ALL  C++H   E+  IAA ++F+L+  D  G +V LSN LA+AG+W   T+
Sbjct: 490 RPSISVWGALLGGCKMHGKTELGRIAAEKLFELDPQD-SGNHVLLSNMLASAGRWAEATD 548

Query: 475 LREKMKLRGVLKDTGCSWV 493
           +R++MK  G+ KD G SW+
Sbjct: 549 VRKEMKNVGIKKDPGRSWI 567



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 165/388 (42%), Gaps = 25/388 (6%)

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P  T+ +Y   I+G  ++ +  ++LS    ++  G RP+ +TF    KA+     + P  
Sbjct: 80  PSPTVVSYTAFISGAAQHARPLQALSAFAAMLRLGLRPNDFTFPSAFKAAA----SAPPR 135

Query: 167 RNLGRMVHAQILKCDVKADDVLYT-ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
              G  +HA  L+     DD   + A +D Y K G  + AR +FD M  +NV+   ++++
Sbjct: 136 SAAGTQLHALALRFGYLPDDAFVSCAALDMYFKTGCLALARRLFDEMPNRNVVAWNAVMT 195

Query: 226 GFMSQGF-VEDAEEIF-------RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIK 277
             +  G  +E  E  F          V      +NA     ++S+          C    
Sbjct: 196 NAVLDGRPLETVEAYFGLRGAGGMPNVVSVCAFFNACAGMTNLSLGEQFYGFVAKCG--- 252

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
             F +DV + +++VD Y KC  +  AR VFD M  +N  +W SM+  Y +NG   +A  +
Sbjct: 253 --FGKDVSVSNSVVDFYGKCRCVGKARAVFDGMGVRNNVSWCSMVVAYAQNGAEEEAFFV 310

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
           +   +    +P        L+ C     +D GR +     R   +   +   + +VD+ G
Sbjct: 311 YLGARRAGEEPTDFMVSSVLTTCAGLLGLDLGRALHAVAVRS-CIDSNIFVASALVDMYG 369

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457
           + G +E A +   EMP++ N   W A++       D   A ++  +   +     P  Y+
Sbjct: 370 KCGGIEDAEQVFFEMPQR-NLVTWNAMIGGYAHIGDAHNA-LSVFDKMIMGQETAPN-YI 426

Query: 458 ALSNTLAA---AGKWDSVTELREKMKLR 482
            L N L A    G      EL + MK R
Sbjct: 427 TLVNVLTACSRGGLTKEGYELFQTMKWR 454


>gi|357160830|ref|XP_003578890.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Brachypodium distachyon]
          Length = 631

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 149/480 (31%), Positives = 260/480 (54%), Gaps = 20/480 (4%)

Query: 27  QTFPPKLQNYDSLS---------NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVK 77
           ++F  KL +  SL          N +  +++   LQ      +   G   H      G+ 
Sbjct: 30  RSFCNKLNHSSSLKDRRLARIDRNLIDVSAISQRLQLCAKRKSLLVGKSCHGLAIHFGLV 89

Query: 78  PNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL 137
            +T     L+ L+ KCG    A  +FD +  R++ ++N MIAGY  +G+  ++L L  ++
Sbjct: 90  TDTLTCNILINLYTKCGRNDCARLVFDIMHVRSIVSWNTMIAGYTHSGEDVQALKLFSRM 149

Query: 138 VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYV 197
              G     +T S     ST C        N  + +H   LK  + ++  + TA++D Y 
Sbjct: 150 HREGTHMSEFTLS-----STICACAAKYAINECKQLHTIALKLALDSNSFVGTAILDVYA 204

Query: 198 KGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR----KTVEKDIVVYNA 253
           K      A  VF+ M E+ ++  +S+ +G++  G  E+A  +FR    + VE      +A
Sbjct: 205 KCNMIKDACWVFEKMPERTLVTWSSLFAGYVQNGLHEEALHLFRCAQREGVELTEFTLSA 264

Query: 254 MIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK 313
           ++   + S+    + +++H  ++K  F  +  + ++LVD+YA+CG+I+ A  +F +M+ K
Sbjct: 265 ILSACA-SLALKIEGIQLHAVILKCGFHGNFFVAASLVDVYARCGQIEKAYALFAYMEHK 323

Query: 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF 373
           NV  W +MI  + ++ +  +A+ LF  MQ+  + PN VT+L  LS C HAGLV+KGR  F
Sbjct: 324 NVVIWNAMIASFSRHAHSWEAMILFEKMQQLGIFPNEVTYLSVLSVCSHAGLVEKGRHYF 383

Query: 374 ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDD 433
             +  D +++P + HY+CMVD+LGR+G  ++A + + +MP +P + +W +LL SCR +++
Sbjct: 384 SLLMSDRTVEPNVLHYSCMVDVLGRSGKTDEAWELLNKMPFEPTASMWGSLLGSCRNYNN 443

Query: 434 VEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           + +A IAA ++F+L   D  G +V LSN  AA+G W++V   R+ +K  G  K+ G SW+
Sbjct: 444 IRLARIAAEQLFQLEP-DNGGNHVLLSNVYAASGNWENVLMARKYLKDSGAKKEMGRSWI 502


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 154/474 (32%), Positives = 250/474 (52%), Gaps = 21/474 (4%)

Query: 32  KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHL 91
           +++N     N  T  S+  A+   ++ +    G ++    ++ G++ N  +   L+ ++ 
Sbjct: 258 RMKNGACTPNMYTLVSVSKAVGKLVDVNM---GKEVQNCASELGIEGNVLVGTALIDMYS 314

Query: 92  KCGALKYAGQMFDE--LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149
           KCG+L  A  +FD   +     + +N MI+GY ++G  +E+L L  ++  +G   D YT+
Sbjct: 315 KCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTY 374

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV-LYTALVDSYVKGGKTSYARIV 208
             +  A    +S        GR+VH  +LKC +    V +  A+ D+Y K G     R V
Sbjct: 375 CSVFNAIAASKS-----LQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKV 429

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS------I 262
           FD M E++++  T++++ +      E+A   F    E+             IS      +
Sbjct: 430 FDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFL 489

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
           E  R   +VH  L K     +  + SAL+DMYAKCG I +A +VFD +   ++ +WT++I
Sbjct: 490 EYGR---QVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAII 546

Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382
            GY ++G    AL+LF  M+   ++ N VT L  L AC H G+V++G   F+ ME  Y +
Sbjct: 547 SGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGV 606

Query: 383 KPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAAN 442
            P+MEHYAC++DLLGR G L+ A++F+ +MP +PN  VW  LL  CR+H +VE+  IAA 
Sbjct: 607 VPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAAR 666

Query: 443 EIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
           +I  +   +    YV LSNT    G ++    LR  MK +GV K+ G SW+  +
Sbjct: 667 KILSIRP-EYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVK 719



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 106/404 (26%), Positives = 192/404 (47%), Gaps = 37/404 (9%)

Query: 52  LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL 111
           +Q  I  D+   G  +HA I   G   +  +S  LL ++ K G+++ +  +F+ + +   
Sbjct: 174 IQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQ 233

Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR 171
            ++N MI+G   NG   E+  L  ++ +    P+ YT   + KA         +  N+G+
Sbjct: 234 VSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKA-----VGKLVDVNMGK 288

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI-CST-----SMIS 225
            V     +  ++ + ++ TAL+D Y K G    AR VFD     N I C       +MIS
Sbjct: 289 EVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFD----TNFINCGVNTPWNAMIS 344

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIV--------VYNAMIEGYSISIETARKALEVHCQLIK 277
           G+   G  ++A E++ +  +  I         V+NA+    S+        + + C L  
Sbjct: 345 GYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDL 404

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
            V    V + +A+ D Y+KCG ++D R+VFD M+++++ +WT+++  Y ++    +AL  
Sbjct: 405 MV----VSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALAT 460

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC----MV 393
           FC+M+E    PN  TF   L +C     ++ GR++   +      K  ++   C    ++
Sbjct: 461 FCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLL-----CKAGLDTEKCIESALI 515

Query: 394 DLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           D+  + GS+ +A K V +    P+   W A++S    H  VE A
Sbjct: 516 DMYAKCGSITEAGK-VFDKISNPDIVSWTAIISGYAQHGLVEDA 558



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 88/292 (30%), Positives = 151/292 (51%), Gaps = 16/292 (5%)

Query: 89  LHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYT 148
           ++ KC   + A  +FDE+PQR + ++  MI G  ++G   +      ++++SG  PD + 
Sbjct: 110 VYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFA 169

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIV 208
           +S I+++     S       LG+MVHAQI+         + T+L++ Y K G    +  V
Sbjct: 170 YSAIIQSCIGLDS-----LELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWV 224

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKA 268
           F+MM E N +   +MISG  S G   +A ++F +   K+      M    S+S +   K 
Sbjct: 225 FNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRM--KNGACTPNMYTLVSVS-KAVGKL 281

Query: 269 LEVHC-QLIKNVFFE-----DVKLGSALVDMYAKCGKIDDARRVFD-HMQQKNVFT-WTS 320
           ++V+  + ++N   E     +V +G+AL+DMY+KCG + DAR VFD +     V T W +
Sbjct: 282 VDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNA 341

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           MI GY ++G   +ALEL+  M +  +  +  T+    +A   +  +  GR +
Sbjct: 342 MISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVV 393



 Score = 95.1 bits (235), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 67/242 (27%), Positives = 116/242 (47%), Gaps = 8/242 (3%)

Query: 170 GRMVHAQILKCDVKADD--VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
            + VH  +LK + +  D  VL+      Y K  +   A  VFD M ++NV   T MI G 
Sbjct: 83  AKAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGS 142

Query: 228 MSQGFVEDAEEIFRKTVEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFED 283
              G   D  + F + +   I+     Y+A+I+   I +++      VH Q++   F   
Sbjct: 143 TEHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQS-CIGLDSLELGKMVHAQIVMRGFATH 201

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
           + + ++L++MYAK G I+D+  VF+ M + N  +W +MI G   NG   +A +LF  M+ 
Sbjct: 202 IFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKN 261

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE 403
               PN  T +    A G    V+ G+E+ ++   +  ++  +     ++D+  + GSL 
Sbjct: 262 GACTPNMYTLVSVSKAVGKLVDVNMGKEV-QNCASELGIEGNVLVGTALIDMYSKCGSLH 320

Query: 404 QA 405
            A
Sbjct: 321 DA 322


>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
          Length = 735

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 144/454 (31%), Positives = 241/454 (53%), Gaps = 18/454 (3%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L+A S+P  L           G ++H  I K G+    ++   L+ ++ K G +  A  +
Sbjct: 227 LSAVSVPLGL---------LMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHV 277

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           F+   +R    ++ MI GY +NG+ + ++S+  ++ ++G  P  +TF  +L AS+   + 
Sbjct: 278 FESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGAL 337

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
                 +G+  H  ++K   +    + +ALVD Y K G  + A+  FD + E +++  T+
Sbjct: 338 A-----VGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTA 392

Query: 223 MISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEG---YSISIETARKALEVHCQLIKNV 279
           M+SG +  G  E+A  ++ +  ++ I+   + I         I       ++H Q++K  
Sbjct: 393 MVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYG 452

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
                 +GSAL  MY+KCG ++D   VF  +  ++V  W S+I G+ +NG  N AL+LF 
Sbjct: 453 LGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFE 512

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
            M+     P+ +TF+  L AC H GLVD+G E F  M +DY + P+++HYACMVD+L RA
Sbjct: 513 EMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRA 572

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVAL 459
           G L++A  F+  +     + +W  +L +CR   D ++   A   + +L   D   AY+ L
Sbjct: 573 GMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTRD-SSAYILL 631

Query: 460 SNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           SN  A+  KW+ V  +R  M+LRGV KD GCSWV
Sbjct: 632 SNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWV 665



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 93/358 (25%), Positives = 173/358 (48%), Gaps = 23/358 (6%)

Query: 79  NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLV 138
           N  +   LL ++ K G +  A +MFD +PQR   +++ M+AGY      EE+  L R ++
Sbjct: 152 NVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLML 211

Query: 139 SS--GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196
                E+ + +  + +L A +     VPL   +G  +H  I+K  +     +  +LV  Y
Sbjct: 212 EECPSEKSE-FVATAVLSAVS-----VPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMY 265

Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK--------TVEKDI 248
            K G    A  VF+   E+N I  ++MI+G+   G  + A  +F +        T    +
Sbjct: 266 AKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFV 325

Query: 249 VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFD 308
            V NA  +  ++++       + H  ++K  F   + + SALVDMYAKCG I DA+  FD
Sbjct: 326 GVLNASSDLGALAV-----GKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFD 380

Query: 309 HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDK 368
            + + ++  WT+M+ G+ +NG   +AL L+  M +  + P+  T    L AC     ++ 
Sbjct: 381 QLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEP 440

Query: 369 GREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           G+++   + + Y +       + +  +  + G+LE  +     +P++ +   W +++S
Sbjct: 441 GKQLHTQIVK-YGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDR-DVIAWNSIIS 496


>gi|225447043|ref|XP_002269269.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 640

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 170/515 (33%), Positives = 254/515 (49%), Gaps = 50/515 (9%)

Query: 20  YTLVPPNQTFPPKLQNYDS--LSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVK 77
           +T+ P +      LQN +   +  P      P  L+H  +  T     +IHA    TG+ 
Sbjct: 6   FTVSPLSLPSQSNLQNQNPPWIPTPQLLCKYP-ILRHLSSCKTLKDLTQIHAQTITTGIF 64

Query: 78  PNTNISIKLLILHLKC--GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVR 135
            +  ++ ++L        G++ YA  +F  + +  +   N +I  Y  +    +++    
Sbjct: 65  SDNFVASRILSFAALSPHGSIPYARFLFYRIRKPDIFIANTLIRAYAFSPNPIDAVVFYS 124

Query: 136 KLV-SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVD 194
           ++  SS   PD +TF ++LKA     S +P  R LG  +H+ + K    ++  +   LV 
Sbjct: 125 EMTESSVVFPDVHTFPLLLKAC----SEIPSLR-LGEAIHSHVFKLGWSSEVSVSNFLVQ 179

Query: 195 SYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAM 254
            Y   G    A +VFD   E +      MI G++  G  + A  +F    ++D+V ++ M
Sbjct: 180 MYASCGLIESAGLVFDRTPECDGASWNIMIGGYLKCGVFKSARRMFEAMPDRDVVSWSVM 239

Query: 255 IEGY------------------------------SISIETARKALEVHCQLI------KN 278
           I GY                              ++S      A+E   Q I      KN
Sbjct: 240 INGYVQESRFKEGLGLFQDMMGEKIEPNESVLVNALSACAHLGAME-QGQWIERYMERKN 298

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
           V    V+LG+AL+DMY+KCG ++ A  VF  M++KNV  W++MI+G   NG    AL LF
Sbjct: 299 VRL-TVRLGTALIDMYSKCGSVERALEVFHKMKEKNVLAWSAMINGLAINGQGKDALNLF 357

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398
             M+   V+PN VTF+G L+AC H+ LVD+G   F SM   Y +KP   H+ CMVDL GR
Sbjct: 358 SQMEMQGVKPNEVTFIGILNACSHSKLVDEGCSFFHSMTSIYGLKPNAHHHCCMVDLYGR 417

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVA 458
           AG L+QA   +  MP KPNS +W ALL++CR+H D E+       + +L+ N   G YV 
Sbjct: 418 AGMLDQAQTVIKSMPFKPNSAIWGALLNACRIHGDTELGEQVGKRLLELDPN-HGGRYVL 476

Query: 459 LSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           LSN  AA G+WD V ELR  M+ R V K  GCS++
Sbjct: 477 LSNIYAACGRWDRVAELRRMMRERQVSKTPGCSFI 511


>gi|356568841|ref|XP_003552616.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
           chloroplastic-like [Glycine max]
          Length = 658

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 146/435 (33%), Positives = 242/435 (55%), Gaps = 7/435 (1%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           GL +H  +  +G   +  ++ KL+ ++ + G++  A ++FDE  +RT+  +N +      
Sbjct: 97  GLDVHRRLVSSGFDQDPFLATKLINMYYELGSIDRARKVFDETRERTIYVWNALFRALAM 156

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G  +E L L  ++   G   D +T++ +LKA      +V  P   G+ +HA IL+   +
Sbjct: 157 VGCGKELLDLYVQMNWIGIPSDRFTYTFVLKACVVSELSVS-PLQKGKEIHAHILRHGYE 215

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR-K 242
           A+  + T L+D Y K G  SYA  VF  M  KN +  ++MI+ F        A E+F+  
Sbjct: 216 ANIHVMTTLLDVYAKFGSVSYANSVFCAMPTKNFVSWSAMIACFAKNEMPMKALELFQLM 275

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCG 298
            +E    V N++     +       ALE    +H  +++      + + +AL+ MY +CG
Sbjct: 276 MLEAHDSVPNSVTMVNVLQACAGLAALEQGKLIHGYILRRGLDSILPVLNALITMYGRCG 335

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           +I   +RVFD+M+ ++V +W S+I  YG +G   +A+++F  M      P+Y++F+  L 
Sbjct: 336 EILMGQRVFDNMKNRDVVSWNSLISIYGMHGFGKKAIQIFENMIHQGSSPSYISFITVLG 395

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC HAGLV++G+ +FESM   Y + P MEHYACMVDLLGRA  L++A+K + +M  +P  
Sbjct: 396 ACSHAGLVEEGKILFESMLSKYRIHPGMEHYACMVDLLGRANRLDEAIKLIEDMHFEPGP 455

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            VW +LL SCR+H +VE+A  A+  +F+L   +  G YV L++  A A  W     + + 
Sbjct: 456 TVWGSLLGSCRIHCNVELAERASTLLFELEPRN-AGNYVLLADIYAEAKMWSEAKSVMKL 514

Query: 479 MKLRGVLKDTGCSWV 493
           ++ RG+ K  GCSW+
Sbjct: 515 LEARGLQKLPGCSWI 529


>gi|242091211|ref|XP_002441438.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
 gi|241946723|gb|EES19868.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
          Length = 771

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 144/453 (31%), Positives = 254/453 (56%), Gaps = 13/453 (2%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           + +L S L   ++      G ++H +  +  ++ +  I+  L+ ++ K G L+ A  +F+
Sbjct: 314 SVTLSSLLPALVDLGYFHLGKEVHGYSIRRAMESDIFIANSLMDMYAKFGCLEKASAIFE 373

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP 164
            +  R + ++N MIA   +NG   E+ SLV ++  +GE P+ +T   +L A  C R    
Sbjct: 374 NIEGRNVVSWNAMIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLLPA--CSRVA-- 429

Query: 165 LPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
               +G+ +HA  +   + +D  +  AL+D Y K G+ S A+ +FD   EK+ +   ++I
Sbjct: 430 -SVKMGKQIHAWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQDIFDRS-EKDDVSYNTLI 487

Query: 225 SGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVF 280
            G+       ++  +F++     +E D V +   +   + ++   ++  E+H  L++ + 
Sbjct: 488 VGYSQSQCCFESLHLFQQMRSAGIEYDAVSFMGCLSACA-NLSAFKQGKEIHGVLVRRLL 546

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
                L ++L+D+Y K G +  A ++F+ + +K+V +W +MI GYG +G  + A ELF +
Sbjct: 547 NTHPFLANSLLDLYTKGGMLATASKIFNRITRKDVASWNTMILGYGMHGQIDVAFELFDL 606

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           M++  V  ++V+++  LSAC H GLVD+G++ F  M    ++KP+  HYACMVDLLGRAG
Sbjct: 607 MKDDGVDYDHVSYIAVLSACSHGGLVDRGKKYFSQMIAQ-NIKPQQMHYACMVDLLGRAG 665

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
            L ++++ +  MP   NSDVW ALL SCR+H D+E+A +AA  +F+L   +  G Y  L 
Sbjct: 666 QLSESVEIITNMPFPANSDVWGALLGSCRIHGDIELARLAAEHLFELKP-EHSGYYTLLR 724

Query: 461 NTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           N  + +G W+   E++  MK R V K+   SWV
Sbjct: 725 NMYSESGMWNEANEIKTLMKSRKVQKNPAYSWV 757



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/309 (27%), Positives = 148/309 (47%), Gaps = 13/309 (4%)

Query: 102 MFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161
           +FDE+P R + ++N +++  L NG +E++   V  ++ SG   +  +   ++ A    R 
Sbjct: 169 VFDEMPARDIVSWNSLVSALLTNGMLEDAKRAVVGMMRSGIPVNVASLVSVVPACGTERD 228

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
                   G  VH  +LK  + +   L  ALVD Y K G    +  VF+ M EKN +   
Sbjct: 229 -----EGFGLSVHGLVLKSGLDSVVNLGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWN 283

Query: 222 SMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIK 277
           S +  F   GF ED  E+FR   E ++    V  ++++    + +       EVH   I+
Sbjct: 284 SALGCFAHAGFHEDVLEMFRVMSEHEVTPGSVTLSSLLPAL-VDLGYFHLGKEVHGYSIR 342

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
                D+ + ++L+DMYAK G ++ A  +F++++ +NV +W +MI    +NG   +A  L
Sbjct: 343 RAMESDIFIANSLMDMYAKFGCLEKASAIFENIEGRNVVSWNAMIANLAQNGAETEAFSL 402

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE-SMERDYSMKPKMEHYACMVDLL 396
              MQ+    PN  T +  L AC     V  G++I   S+ R  S+   +     ++D+ 
Sbjct: 403 VIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWSIHR--SLMSDLFVSNALIDVY 460

Query: 397 GRAGSLEQA 405
            + G L  A
Sbjct: 461 AKCGQLSVA 469



 Score =  112 bits (280), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 96/417 (23%), Positives = 197/417 (47%), Gaps = 23/417 (5%)

Query: 42  PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQ 101
           P+   SL S +          +GL +H  + K+G+    N+   L+ ++ K G L+ + +
Sbjct: 210 PVNVASLVSVVPACGTERDEGFGLSVHGLVLKSGLDSVVNLGNALVDMYGKFGDLESSMR 269

Query: 102 MFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161
           +F+ + ++   ++N  +  +   G  E+ L + R +      P   T S +L A      
Sbjct: 270 VFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRVMSEHEVTPGSVTLSSLLPAL----- 324

Query: 162 NVPLPR-NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
            V L   +LG+ VH   ++  +++D  +  +L+D Y K G    A  +F+ +  +NV+  
Sbjct: 325 -VDLGYFHLGKEVHGYSIRRAMESDIFIANSLMDMYAKFGCLEKASAIFENIEGRNVVSW 383

Query: 221 TSMISGFMSQGFVEDAEEI---FRKTVE--KDIVVYNAMIEGYSISIETARKALEVHCQL 275
            +MI+     G   +A  +    +K  E      + N +     ++  + +   ++H   
Sbjct: 384 NAMIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLLPACSRVA--SVKMGKQIHAWS 441

Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
           I      D+ + +AL+D+YAKCG++  A+ +FD  ++ +V ++ ++I GY ++    ++L
Sbjct: 442 IHRSLMSDLFVSNALIDVYAKCGQLSVAQDIFDRSEKDDV-SYNTLIVGYSQSQCCFESL 500

Query: 336 ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVD 394
            LF  M+   ++ + V+F+G LSAC +     +G+EI   +  R  +  P + +   ++D
Sbjct: 501 HLFQQMRSAGIEYDAVSFMGCLSACANLSAFKQGKEIHGVLVRRLLNTHPFLAN--SLLD 558

Query: 395 LLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451
           L  + G L  A K    +  K  +  W  ++    +H  +++    A E+F L  +D
Sbjct: 559 LYTKGGMLATASKIFNRITRKDVAS-WNTMILGYGMHGQIDV----AFELFDLMKDD 610



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/331 (29%), Positives = 150/331 (45%), Gaps = 16/331 (4%)

Query: 107 PQRTLSAY--NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP 164
           P R  SA+  N +       G   E+L +   +V SG RPD  TF   L A+        
Sbjct: 65  PLRLRSAFLWNSLSRALASAGLPSEALRVYNCMVRSGVRPDDRTFPFALHAAAAAVVAEA 124

Query: 165 LPRNLGRMVHAQILKCDVKADDVLY-TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
                G  +HA  L+  +   DV     LV  Y   G+ + AR VFD M  ++++   S+
Sbjct: 125 EHPAKGAELHAAALRRGLLLADVFAGNTLVTFYAARGRAADARRVFDEMPARDIVSWNSL 184

Query: 224 ISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARK---ALEVHCQLIKNVF 280
           +S  ++ G +EDA+      +   I V  A +     +  T R     L VH  ++K+  
Sbjct: 185 VSALLTNGMLEDAKRAVVGMMRSGIPVNVASLVSVVPACGTERDEGFGLSVHGLVLKSGL 244

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
              V LG+ALVDMY K G ++ + RVF+ MQ+KN  +W S +  +   G     LE+F +
Sbjct: 245 DSVVNLGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRV 304

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH----YACMVDLL 396
           M E  V P  VT    L A    G    G+E+       YS++  ME        ++D+ 
Sbjct: 305 MSEHEVTPGSVTLSSLLPALVDLGYFHLGKEV-----HGYSIRRAMESDIFIANSLMDMY 359

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
            + G LE+A   + E  E  N   W A++++
Sbjct: 360 AKFGCLEKA-SAIFENIEGRNVVSWNAMIAN 389


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 140/436 (32%), Positives = 240/436 (55%), Gaps = 14/436 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H     TG   + ++  ++L  + K   +     +F+E+P+    +YN +I+ Y +
Sbjct: 263 GQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQ 322

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
             Q EESL+L R++   G     + F+ +L  +    S       +GR VH Q +     
Sbjct: 323 AEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSS-----LQVGRQVHCQAIVA--T 375

Query: 184 ADDVLYT--ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           AD +L+   +LVD Y K      A ++F  + +++ +  T++ISG++ +G      ++F 
Sbjct: 376 ADSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFT 435

Query: 242 K----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           K     +  D   +  +++  S    +     ++H  +I++   E+V  GS LVDMYAKC
Sbjct: 436 KMRGANLRADQSTFATVLKA-SAGFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKC 494

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G I DA +VF+ M  +N  +W ++I  Y  NG+   A+  F  M +  +QP+ V+ LG L
Sbjct: 495 GSIKDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVL 554

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            AC H G V++G E F++M   Y + PK +HYACM+DLLGR G   +A K + EMP +P+
Sbjct: 555 IACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPD 614

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
             +W+++L++CR++ +  +A  AA ++F +       AYV++SN  AAAGKW++V  +++
Sbjct: 615 EIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAAAGKWENVRHVKK 674

Query: 478 KMKLRGVLKDTGCSWV 493
            M+ RG+ K    SWV
Sbjct: 675 AMRERGIKKVPAYSWV 690



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/378 (25%), Positives = 182/378 (48%), Gaps = 14/378 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGA--LKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           ++HA   K G   N  +++  ++L   C    L  A  +F+E+  +    +N +I GY K
Sbjct: 162 QVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGYEK 221

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G   E++ L  K+  SG +P  +TFS +LKA             LG+ +H   +     
Sbjct: 222 DGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGLHDFA-----LGQQLHGLSVTTGFS 276

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +   ++  Y K  +    R +F+ M E + +    +IS +      E++  +FR+ 
Sbjct: 277 RDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVISSYSQAEQYEESLNLFREM 336

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
                ++    +  M+   + ++ + +   +VHCQ I       + +G++LVDMYAKC  
Sbjct: 337 QCMGFDRRNFPFATMLS-IAANLSSLQVGRQVHCQAIVATADSILHVGNSLVDMYAKCEM 395

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
            D+A  +F  + Q++  +WT++I GY + G     L+LF  M+   ++ +  TF   L A
Sbjct: 396 FDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTKMRGANLRADQSTFATVLKA 455

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
                 +  G+++   + R  +++      + +VD+  + GS++ A++   EMP++ N+ 
Sbjct: 456 SAGFASLLLGKQLHAFIIRSGNLENVFSG-SGLVDMYAKCGSIKDAVQVFEEMPDR-NAV 513

Query: 420 VWAALLSSCRLHDDVEMA 437
            W AL+S+   + D E A
Sbjct: 514 SWNALISAYADNGDGEAA 531



 Score = 87.0 bits (214), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 77/360 (21%), Positives = 155/360 (43%), Gaps = 19/360 (5%)

Query: 73  KTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLS 132
           K  V  NT IS      ++K G L  A  +FD +P RT+  +  ++  Y  N   +E+  
Sbjct: 73  KNTVSTNTMIS-----GYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFK 127

Query: 133 LVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT-- 190
           L R++  S   PD  TF+ +L        N  +P+N    VHA  +K     +  L    
Sbjct: 128 LFRQMCRSCTLPDYVTFTTLLPG-----CNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCN 182

Query: 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV 250
            L+ SY +  +   A ++F+ +L+K+ +   ++I+G+   G   +A  +F K  +     
Sbjct: 183 VLLKSYCEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKP 242

Query: 251 YNAMIEGY---SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVF 307
            +    G     + +       ++H   +   F  D  +G+ ++  Y+K  ++ + R +F
Sbjct: 243 SDFTFSGVLKAVVGLHDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLF 302

Query: 308 DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367
           + M + +  ++  +I  Y +     ++L LF  MQ          F   LS   +   + 
Sbjct: 303 NEMPELDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQ 362

Query: 368 KGREIFESMERDYSMKPKMEHYA-CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
            GR++    +   +    + H    +VD+  +    ++A + + +   + ++  W AL+S
Sbjct: 363 VGRQV--HCQAIVATADSILHVGNSLVDMYAKCEMFDEA-ELIFKSLSQRSTVSWTALIS 419



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 63/267 (23%), Positives = 112/267 (41%), Gaps = 45/267 (16%)

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
           P    R V A+I+K     D       V+  ++ G+ S A  V+D M  KN + + +MIS
Sbjct: 24  PPPATRRVDARIIKTGFNTDTCRSNFTVEDLLRRGQVSAALKVYDEMPHKNTVSTNTMIS 83

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS--IETARKALEVHCQ--------- 274
           G++  G +  A  +F    ++ +V +  ++  Y+ +   + A K     C+         
Sbjct: 84  GYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFRQMCRSCTLPDYVT 143

Query: 275 ---------------LIKNVFFEDVKLG----------SALVDMYAKCGKIDDARRVFDH 309
                           +  V    VKLG          + L+  Y +  ++D A  +F+ 
Sbjct: 144 FTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLACVLFEE 203

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD-- 367
           +  K+  T+ ++I GY K+G   +A+ LF  M++   +P+  TF G L A    GL D  
Sbjct: 204 ILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAV--VGLHDFA 261

Query: 368 -----KGREIFESMERDYSMKPKMEHY 389
                 G  +     RD S+  ++ H+
Sbjct: 262 LGQQLHGLSVTTGFSRDASVGNQILHF 288


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  255 bits (651), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 142/435 (32%), Positives = 247/435 (56%), Gaps = 14/435 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H ++  +G + +T     L+ ++ KCG L  A ++FD    +    +N +I GY +
Sbjct: 341 GKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQ 400

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G  +E L    K++    +PD  TF ++L   +          N GR +H  ++K   +
Sbjct: 401 SGYYKEGLESF-KMMKMERKPDSVTFVLLLSIFSQLAD-----INQGRGIHCDVIKFGFE 454

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM-----SQGFVEDAEE 238
           A+ ++  +L+D Y K G+      VF  M   ++I   ++I+  +     + GF +   E
Sbjct: 455 AELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGF-QMINE 513

Query: 239 IFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
           +  + +  D      ++   S+ +   R+  E+H  + K+ F  +V +G+AL++MY+KCG
Sbjct: 514 MRTEGLMPDEATVLGILPMCSL-LAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCG 572

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            +++  +VF +M++K+V TWT++I  +G  G   +AL+ F  M+   V P+ V F+  + 
Sbjct: 573 SLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIF 632

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC H+G+V +G   F+ M+ DY+++P+MEHYAC+VDLL R+G L QA +F+L MP KP++
Sbjct: 633 ACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDA 692

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            +W ALLS+CR   +  +A   + +I +LN++D  G YV +SN  A  GKWD V  +R  
Sbjct: 693 SLWGALLSACRARGNTNIAQRVSKKILELNSDD-TGYYVLVSNIYATLGKWDQVKTVRNS 751

Query: 479 MKLRGVLKDTGCSWV 493
           MK +G+ K+ G SW+
Sbjct: 752 MKTKGLKKEPGSSWI 766



 Score =  133 bits (334), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/377 (25%), Positives = 182/377 (48%), Gaps = 20/377 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+ +H  I K G+  +  I   LL ++ K   L+ A ++F ++  +    +N MI GY +
Sbjct: 241 GVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQ 300

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G+ E S+ L   ++  G  PD  + +  ++A  C +S       +G+ VH  ++    +
Sbjct: 301 LGRHEASVKLFMDMID-GFVPDMLSITSTIRA--CGQSG---DLQVGKFVHKYLIGSGFE 354

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR-- 241
            D V    L+D Y K G    A+ VFD    K+ +   S+I+G+   G+ ++  E F+  
Sbjct: 355 CDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMM 414

Query: 242 KTVEK-DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           K   K D V +  ++  +S  +    +   +HC +IK  F  ++ +G++L+D+YAKCG++
Sbjct: 415 KMERKPDSVTFVLLLSIFS-QLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEM 473

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           DD  +VF +M   ++ +W ++I       +     ++   M+   + P+  T LG L  C
Sbjct: 474 DDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMC 533

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYA----CMVDLLGRAGSLEQALKFVLEMPEKP 416
               +  +G+EI       Y  K   E        ++++  + GSLE  +K    M EK 
Sbjct: 534 SLLAVRRQGKEI-----HGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEK- 587

Query: 417 NSDVWAALLSSCRLHDD 433
           +   W AL+S+  ++ +
Sbjct: 588 DVVTWTALISAFGMYGE 604



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 196/406 (48%), Gaps = 21/406 (5%)

Query: 30  PPKL-QNYDSLSNPLTATSLPSALQHYINSDTPFYGLK-IHAHITKTGVKPNTNISIKLL 87
           PPK   N+++   P +   L S+L   ++S      L+ +H+ I  +G+  +   S KL+
Sbjct: 3   PPKFCSNFNNTPEP-SQEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLI 61

Query: 88  ILHLKCGALKYAGQMFDEL-PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDG 146
             + +      +  +F  + P   +  +N +I     NG   ++L    ++     +PD 
Sbjct: 62  SKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDA 121

Query: 147 YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR 206
           +TF  ++  ++C R    L   LG +VH   ++   ++D  +  AL+D Y +      AR
Sbjct: 122 FTFPSVI--NSCAR---ILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNAR 176

Query: 207 IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK----TVEKDIVVYNAMIEGYSISI 262
            VF+ M  ++ +   S+ISG+ S GF EDA +++ K     +  D    ++++     S+
Sbjct: 177 YVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACG-SL 235

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
              ++ + VH  + K     DV +G+ L+ MY K  ++ +ARRVF  M  K+  TW +MI
Sbjct: 236 MAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMI 295

Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382
            GY + G    +++LF  M +  V P+ ++    + ACG +G +  G+ + + +      
Sbjct: 296 CGYAQLGRHEASVKLFMDMIDGFV-PDMLSITSTIRACGQSGDLQVGKFVHKYL---IGS 351

Query: 383 KPKMEHYAC--MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
             + +  AC  ++D+  + G L  A + V +  +  +S  W +L++
Sbjct: 352 GFECDTVACNILIDMYAKCGDLLAAQE-VFDTTKCKDSVTWNSLIN 396


>gi|413916233|gb|AFW56165.1| hypothetical protein ZEAMMB73_705806 [Zea mays]
          Length = 597

 Score =  255 bits (651), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 157/460 (34%), Positives = 242/460 (52%), Gaps = 16/460 (3%)

Query: 45  ATSLPSALQHYINSDTPFYGLK-IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           A +L   L H +   +    +   HA + K G+    + S  LL  + +CGA+  A  +F
Sbjct: 8   AAALKPVLIHLLRGGSDLASVAATHAKLVKAGIATPLSSSNHLLAAYCRCGAIGRARDLF 67

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           D +  R + ++  +++GY    +  +++SL+R +  SG RP+  TFS    A TC R   
Sbjct: 68  DGMRDRDVVSWTTLMSGYAAAARPRDAVSLLRAMGCSGVRPNAVTFST--AACTCAR--- 122

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE--KNVICST 221
                LGR VHAQ        D V+ TALVD Y K G    AR VFD M    +N +   
Sbjct: 123 LADAELGRQVHAQAEIAGCARDTVVATALVDMYGKSGSVEDARAVFDAMAAPARNAVSWG 182

Query: 222 SMISGFMSQGFVEDAEEIFR--KTVEKDIVVYNAMIEGY-SISIETARKALE--VHCQLI 276
           +M++ ++      +A E+F   +T    +   + M+    S     AR  +   VH  ++
Sbjct: 183 AMLAVYVQNALGNEAVELFAELRTCGGGMAPNHFMLASVVSACAGMARLGIGRCVHGAVL 242

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           +  +  +  +  ALVDMY+KCG+ + +R+VFD ++Q +V T+TS+I    K G    AL 
Sbjct: 243 RLGYGNNDVISVALVDMYSKCGRYEYSRKVFDRIEQPSVVTYTSIIVAAAKYGRWTCALT 302

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           LF  M +  VQPN VT LG + AC H+GLVD G ++  SM+  Y + P   HY   VD+L
Sbjct: 303 LFNEMVDQGVQPNDVTLLGVMHACSHSGLVDTGLQLLRSMQSRYGVAPCPSHYTSAVDML 362

Query: 397 GRAGSLEQALKFVLEMPEKPNSD--VWAALLSSCRLHDDVEMANIAANEIFKL-NANDRP 453
           GRAG LE+A +   E   + N    +W +LLS+CR H  +++A +A   +++  N  D  
Sbjct: 363 GRAGRLEEAFELAKEAQLEGNDALLLWNSLLSACRTHKRLDLATMAGQRVYEFNNQQDVA 422

Query: 454 GAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
              V +SN   +AG+ D+   +R  M+LRG+ KD GCSW+
Sbjct: 423 AGLVVMSNAYISAGQIDNAAAVRSSMRLRGIRKDPGCSWI 462


>gi|297737392|emb|CBI26593.3| unnamed protein product [Vitis vinifera]
          Length = 459

 Score =  255 bits (651), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 154/431 (35%), Positives = 235/431 (54%), Gaps = 25/431 (5%)

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           L+ HA I  +G   N  I+ KL+ L+        + ++FDE+P R    +N +I  +  N
Sbjct: 52  LQSHAFIITSGYSNNIFIASKLISLYASFHKPSCSTELFDEIPHRDAFLWNSIIKAHFSN 111

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV-K 183
           G+   +L   + + +S   P+ +T  MI+  ++C    +    N GR +H  + K  +  
Sbjct: 112 GEYSRALDFYQWMRASEALPNHFTIPMIV--ASCAELELV---NYGRSIHGLVSKLGLFS 166

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            + ++  AL+  Y K G    A   F  + E+N      M S      F ED     +  
Sbjct: 167 GNQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWNLMFS------FCED----LKPN 216

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
               + V +A    +  S+E   K   VH  +    F  ++ + +AL+DMYAKCG+++ +
Sbjct: 217 SATLVSVLSAC--SHLASLEEGEK---VHNYINGGKFEFNLSIATALIDMYAKCGQLEKS 271

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
           R +F+ M +++V TW  MI GYG +G+   A+E F  M+E   +PN +TFL  LSAC HA
Sbjct: 272 REIFNSMHERDVITWNVMISGYGMHGDARSAIEFFQQMEESSAKPNGLTFLAVLSACAHA 331

Query: 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA 423
           GLV +G+ +F  M+ DYS+ P ++HYACMVDLLGR+G+L++A   VL MP  P+  VW A
Sbjct: 332 GLVKEGKYLFGKMQ-DYSVAPNLKHYACMVDLLGRSGNLQEAEALVLSMPISPDGGVWGA 390

Query: 424 LLSSCRLHDDVEMA-NIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
           LLSSC++H+++EM   IA + I     ND  G YV +SN  ++ GKW+   + R  MK R
Sbjct: 391 LLSSCKIHNEIEMGIRIAKHAIDSDVEND--GYYVMISNMYSSIGKWEEAEKARGIMKER 448

Query: 483 GVLKDTGCSWV 493
           GV K TG S V
Sbjct: 449 GVRKKTGWSAV 459



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 41/179 (22%), Positives = 82/179 (45%), Gaps = 1/179 (0%)

Query: 251 YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM 310
           +N +    S  I + +  L+ H  +I + +  ++ + S L+ +YA   K   +  +FD +
Sbjct: 34  FNYLNHLLSNQISSLKTLLQSHAFIITSGYSNNIFIASKLISLYASFHKPSCSTELFDEI 93

Query: 311 QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR 370
             ++ F W S+I  +  NG  ++AL+ +  M+     PN+ T    +++C    LV+ GR
Sbjct: 94  PHRDAFLWNSIIKAHFSNGEYSRALDFYQWMRASEALPNHFTIPMIVASCAELELVNYGR 153

Query: 371 EIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCR 429
            I   + +             ++ +  + G L+ A KF   + E+ N + W  + S C 
Sbjct: 154 SIHGLVSKLGLFSGNQMVQNALLSMYCKFGFLKLAEKFFGRVNEQ-NFEAWNLMFSFCE 211



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 61/279 (21%), Positives = 118/279 (42%), Gaps = 48/279 (17%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           N  T  S+ SA  H  + +    G K+H +I     + N +I+  L+ ++ KCG L+ + 
Sbjct: 216 NSATLVSVLSACSHLASLEE---GEKVHNYINGGKFEFNLSIATALIDMYAKCGQLEKSR 272

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           ++F+ + +R +  +N MI+GY  +G    ++   +++  S  +P+G TF  +L  S C  
Sbjct: 273 EIFNSMHERDVITWNVMISGYGMHGDARSAIEFFQQMEESSAKPNGLTFLAVL--SACAH 330

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           + +                  VK    L+  + D  V      YA               
Sbjct: 331 AGL------------------VKEGKYLFGKMQDYSVAPNLKHYA--------------- 357

Query: 221 TSMISGFMSQGFVEDAEE-IFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
             M+      G +++AE  +    +  D  V+ A++    I  E     +E+  ++ K+ 
Sbjct: 358 -CMVDLLGRSGNLQEAEALVLSMPISPDGGVWGALLSSCKIHNE-----IEMGIRIAKHA 411

Query: 280 FFEDVKLGSALV---DMYAKCGKIDDARRVFDHMQQKNV 315
              DV+     V   +MY+  GK ++A +    M+++ V
Sbjct: 412 IDSDVENDGYYVMISNMYSSIGKWEEAEKARGIMKERGV 450


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  255 bits (651), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 135/434 (31%), Positives = 250/434 (57%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH+   KTG + +  +S  L+ ++ K G L+ A ++ + L ++ + ++  MIAGY++
Sbjct: 364 GEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQ 423

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +   +++L+  +++   G  PD    +  +  S C   N       G  +HA+I      
Sbjct: 424 HECCKDALAAFKEMQKCGIWPDNIGLASAI--SGCAGINA---MRQGLQIHARIYVSGYS 478

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  ++ ALV+ Y + G+   A   F+ +  K+ I    ++SGF   G  E+A ++F + 
Sbjct: 479 GDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRM 538

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               V+ ++  + + +   S ++   ++  ++H ++IK     + ++G+AL+ +Y KCG 
Sbjct: 539 DQSGVKHNVFTFVSALSA-SANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGS 597

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
            +DA+  F  M ++N  +W ++I    ++G   +AL+LF  M++  ++PN VTF+G L+A
Sbjct: 598 FEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAA 657

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H GLV++G   F+SM  +Y ++P+ +HYAC++D+ GRAG L++A KF+ EMP   ++ 
Sbjct: 658 CSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAM 717

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW  LLS+C++H ++E+   AA  + +L  +D   +YV LSN  A   KW +  ++R+ M
Sbjct: 718 VWRTLLSACKVHKNIEVGEFAAKHLLELEPHD-SASYVLLSNAYAVTEKWANRDQVRKMM 776

Query: 480 KLRGVLKDTGCSWV 493
           + RGV K+ G SW+
Sbjct: 777 RDRGVRKEPGRSWI 790



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 190/385 (49%), Gaps = 12/385 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IHA     G+     +   L+ L+ K G +  A ++F+EL  R   ++  M++GY +NG
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             EE+L L R++  +G  P  Y  S +L  S+C ++ +      GR++HAQ  K    ++
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVL--SSCTKAELFAQ---GRLIHAQGYKHGFCSE 177

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT-- 243
             +  A++  Y++ G    A  VF  M  ++ +   ++ISG    G  E A EIF +   
Sbjct: 178 IFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQF 237

Query: 244 --VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
             +  D V  ++++   + S+   +K  ++H  L K     D  +  +L+D+Y KCG ++
Sbjct: 238 SGLSPDCVTISSLLAACA-SLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVE 296

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            A  +F+   + NV  W  M+  +G+  +  ++ ELFC MQ   ++PN  T+   L  C 
Sbjct: 297 TALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCT 356

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
               +D G +I  S+      +  M     ++D+  + G LE+A + VLEM ++ +   W
Sbjct: 357 CTREIDLGEQI-HSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARR-VLEMLKEKDVVSW 414

Query: 422 AALLSSCRLHDDVEMANIAANEIFK 446
            ++++    H+  + A  A  E+ K
Sbjct: 415 TSMIAGYVQHECCKDALAAFKEMQK 439



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 185/388 (47%), Gaps = 14/388 (3%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           T   L S L     ++    G  IHA   K G      +   ++ L+L+CG+ + A ++F
Sbjct: 142 TPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVF 201

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
            ++P R    +N +I+G+ + G  E +L +  ++  SG  PD  T S +L A   C S  
Sbjct: 202 CDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAA---CASLG 258

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
            L +  G  +H+ + K  + +D ++  +L+D YVK G    A ++F+     NV+    M
Sbjct: 259 DLQK--GTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLM 316

Query: 224 ISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
           +  F     +  + E+F +     +  +   Y  ++   + + E      ++H   +K  
Sbjct: 317 LVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGE-QIHSLSVKTG 375

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
           F  D+ +   L+DMY+K G ++ ARRV + +++K+V +WTSMI GY ++     AL  F 
Sbjct: 376 FESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFK 435

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME-RDYSMKPKMEHYACMVDLLGR 398
            MQ+C + P+ +    A+S C     + +G +I   +    YS    +  +  +V+L  R
Sbjct: 436 EMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSI--WNALVNLYAR 493

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALLS 426
            G + +A     E+  K +   W  L+S
Sbjct: 494 CGRIREAFSSFEEIEHK-DEITWNGLVS 520



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 56/111 (50%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +  SAL    N      G +IHA + KTG    T +   L+ L+ KCG+ + A   F E+
Sbjct: 549 TFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEM 608

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
            +R   ++N +I    ++G+  E+L L  ++   G +P+  TF  +L A +
Sbjct: 609 SERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACS 659


>gi|326495618|dbj|BAJ85905.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 788

 Score =  254 bits (650), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 145/452 (32%), Positives = 245/452 (54%), Gaps = 23/452 (5%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L A  L SAL           G ++HA++ + G++ +  +   +L ++ KCG +  A  +
Sbjct: 218 LAACCLESALMQ---------GREVHAYVIRHGMEHDVKVGTSILDMYCKCGDIASAEGV 268

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           F  +P RT+  +N MI GY  N + EE+     ++ + G + +  T   +L A  C ++ 
Sbjct: 269 FATMPSRTVVTWNCMIGGYALNERPEEAFDCFVQMKAEGHQVEVVTAINLLAA--CAQTE 326

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
             L    GR VH  I +       VL TAL++ Y K GK   +  VF  M  K ++   +
Sbjct: 327 SSL---YGRSVHGYITRRQFLPHVVLETALLEMYSKVGKVKSSEKVFGQMTTKTLVSWNN 383

Query: 223 MISGFMSQGFVEDAEEIFRKTVEK----DIVVYNAMIEGYSISIETARKALEVHCQLIKN 278
           MI+ +M +    +A  +F   + +    D    +A++  + + +   R+  ++H  +I+ 
Sbjct: 384 MIAAYMYKEMYMEAITLFLDLLNQPLYPDYFTMSAVVPAF-VLLGLLRQCRQMHSYIIRL 442

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
            + E+  + +A++ MYA+CG +  +R +FD M  K+V +W +MI GY  +G    ALE+F
Sbjct: 443 GYGENTLIMNAIMHMYARCGDVLSSREIFDKMAAKDVISWNTMIMGYAIHGQGRSALEMF 502

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398
             M+   ++PN  TF+  L+AC  +GL D+G   F SM+RDY M P++EHY CM DLLGR
Sbjct: 503 SEMKCNGLRPNESTFVSVLTACSVSGLTDEGWTQFNSMQRDYGMIPQIEHYGCMTDLLGR 562

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN----DRPG 454
           AG L++ ++F+  MP  P   VW +LL++ R  +D+++A  AA  IF+L  +    D  G
Sbjct: 563 AGDLKEVMQFIENMPIDPTFRVWGSLLTASRNRNDIDIAEYAAERIFQLEQDQLEHDNTG 622

Query: 455 AYVALSNTLAAAGKWDSVTELREKMKLRGVLK 486
            YV +S+  A AG+W  V  ++  M+ +G+ +
Sbjct: 623 CYVLISSMYADAGRWKDVERIKSLMEEKGLRR 654



 Score =  119 bits (298), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/346 (28%), Positives = 162/346 (46%), Gaps = 13/346 (3%)

Query: 76  VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVR 135
           V+P    +  L++ H   G +  A +       R    +N +I G    G    +L+   
Sbjct: 38  VRPKPGGTKSLVLSHAAAGRMDDAQEALAAAGSRDAFLHNVVIRGLADAGLPGAALAAYA 97

Query: 136 KLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT--ALV 193
            ++++G RPD +TF ++LK   CC     L  + GR  H+  ++  V A DV YT  +L+
Sbjct: 98  AMLAAGARPDRFTFPVVLK---CCARLGAL--DEGRAAHSAAIRLGVAAADV-YTGNSLL 151

Query: 194 DSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNA 253
             Y + G    A  VFD M  ++V+   SM+ G++S G    A   FR+  E   V ++ 
Sbjct: 152 AFYARLGLVDDAERVFDGMPARDVVTWNSMVDGYVSNGLGTLALVCFREMHEALEVQHDG 211

Query: 254 MIEGYSISIETARKAL----EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309
           +    +++      AL    EVH  +I++    DVK+G++++DMY KCG I  A  VF  
Sbjct: 212 VGIIAALAACCLESALMQGREVHAYVIRHGMEHDVKVGTSILDMYCKCGDIASAEGVFAT 271

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKG 369
           M  + V TW  MI GY  N  P +A + F  M+    Q   VT +  L+AC        G
Sbjct: 272 MPSRTVVTWNCMIGGYALNERPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYG 331

Query: 370 REIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
           R +   + R   + P +     ++++  + G ++ + K   +M  K
Sbjct: 332 RSVHGYITRRQFL-PHVVLETALLEMYSKVGKVKSSEKVFGQMTTK 376



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 60/194 (30%), Positives = 91/194 (46%), Gaps = 14/194 (7%)

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           DV  G++L+  YA+ G +DDA RVFD M  ++V TW SM+DGY  NG    AL  F  M 
Sbjct: 143 DVYTGNSLLAFYARLGLVDDAERVFDGMPARDVVTWNSMVDGYVSNGLGTLALVCFREMH 202

Query: 343 ECC-VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH----YACMVDLLG 397
           E   VQ + V  + AL+AC     + +GRE+       Y ++  MEH       ++D+  
Sbjct: 203 EALEVQHDGVGIIAALAACCLESALMQGREVHA-----YVIRHGMEHDVKVGTSILDMYC 257

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457
           + G +  A      MP +     W  ++    L++  E    A +   ++ A       V
Sbjct: 258 KCGDIASAEGVFATMPSR-TVVTWNCMIGGYALNERPEE---AFDCFVQMKAEGHQVEVV 313

Query: 458 ALSNTLAAAGKWDS 471
              N LAA  + +S
Sbjct: 314 TAINLLAACAQTES 327


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  254 bits (650), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 145/448 (32%), Positives = 251/448 (56%), Gaps = 25/448 (5%)

Query: 64  GLKIHAHITKTG-VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G ++HA+  K G +  N+ +   L+ ++  C  +    ++FD +  R +  +N MI GY 
Sbjct: 317 GKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYA 376

Query: 123 KNGQVEESLSLVRKLV-SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           +N   EE+L L  ++  S+G   +  T + ++ A  C RS     +     +H  ++K  
Sbjct: 377 QNEYDEEALLLFIEMEESAGLLANSTTMAGVVPA--CVRSGAFSKK---EAIHGFVVKRG 431

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----- 236
           +  D  +  AL+D Y + GK   A+ +F  M +++++   ++I+G++     EDA     
Sbjct: 432 LDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDALLMLH 491

Query: 237 ----------EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
                     E   R +++ + +    ++   + ++    K  E+H   IKN    DV +
Sbjct: 492 KMQILERKASERASRVSLKPNSITLMTILPSCA-ALSALAKGKEIHAYAIKNNLATDVAV 550

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
           GSALVDMYAKCG +  +R+VFD +  +NV TW  ++  YG +GN   A+++  MM    V
Sbjct: 551 GSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMMMVQGV 610

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
           +PN VTF+   +AC H+G+V++G +IF +M++DY ++P  +HYAC+VDLLGRAG +++A 
Sbjct: 611 KPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGRVKEAY 670

Query: 407 KFVLEMPEK-PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465
           + +  +P     +  W++LL +CR+H+++E+  IAA  + +L  N     YV L+N  ++
Sbjct: 671 QLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPN-VASHYVLLANIYSS 729

Query: 466 AGKWDSVTELREKMKLRGVLKDTGCSWV 493
           AG W   TE+R  MK +GV K+ GCSW+
Sbjct: 730 AGLWYKATEVRRNMKAQGVRKEPGCSWI 757



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 101/417 (24%), Positives = 197/417 (47%), Gaps = 24/417 (5%)

Query: 37  DSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGAL 96
           D   +  T  S+  A  ++   +    G ++HA+  + G + N+ I   L+ ++ K G L
Sbjct: 190 DVEPSSFTLVSVALACSNFPMPEGLLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKL 248

Query: 97  KYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAS 156
             +  +      R L  +N +++   +N Q  E+L  +R++V  G  PDG+T S +L A 
Sbjct: 249 ASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPAC 308

Query: 157 TCCRSNVPLPRNLGRMVHAQILK-CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
               S++ + R  G+ +HA  LK   +  +  + +ALVD Y    +      VFD M ++
Sbjct: 309 ----SHLEMLRT-GKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDR 363

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN----AMIEGYSISIETARKALEV 271
            +    +MI+G+    + E+A  +F +  E   ++ N    A +    +      K   +
Sbjct: 364 KIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAI 423

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
           H  ++K     D  + +AL+DMY++ GKID A+R+F  M+ +++ TW ++I GY  +   
Sbjct: 424 HGFVVKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERH 483

Query: 332 NQALELFCMMQ-----------ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
             AL +   MQ              ++PN +T +  L +C     + KG+EI     ++ 
Sbjct: 484 EDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN- 542

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           ++   +   + +VD+  + G L+ + K   ++P + N   W  ++ +  +H + + A
Sbjct: 543 NLATDVAVGSALVDMYAKCGCLQMSRKVFDQIPIR-NVITWNVIVMAYGMHGNSQDA 598



 Score =  118 bits (295), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 99/383 (25%), Positives = 183/383 (47%), Gaps = 26/383 (6%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNT-NISIKLLILHLKCGALKYAGQMFDE 105
           + P+ L+   +      G +IHAH+ K G   ++  ++  L+ L+ KCG      ++FD 
Sbjct: 95  AFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDR 154

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           + +R   ++N +I+      + E +L   R ++     P   +F+++  A  C  SN P+
Sbjct: 155 ISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPS--SFTLVSVALAC--SNFPM 210

Query: 166 PRNL--GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
           P  L  G+ VHA  L+   + +  +   LV  Y K GK + ++++      ++++   ++
Sbjct: 211 PEGLLMGKQVHAYGLR-KGELNSFIINTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTV 269

Query: 224 ISGF-MSQGFVEDAE---EIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKN- 278
           +S    ++ F+E  E   E+  + VE D    ++++   S  +E  R   E+H   +KN 
Sbjct: 270 LSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACS-HLEMLRTGKELHAYALKNG 328

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
              E+  +GSALVDMY  C ++    RVFD M  + +  W +MI GY +N    +AL LF
Sbjct: 329 SLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLF 388

Query: 339 CMMQECC-VQPNYVTFLGALSACGHAGLVDKGREIF-----ESMERDYSMKPKMEHYACM 392
             M+E   +  N  T  G + AC  +G   K   I        ++RD  ++        +
Sbjct: 389 IEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIHGFVVKRGLDRDRFVQ------NAL 442

Query: 393 VDLLGRAGSLEQALKFVLEMPEK 415
           +D+  R G ++ A +   +M ++
Sbjct: 443 MDMYSRLGKIDIAKRIFGKMEDR 465



 Score = 72.8 bits (177), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/259 (23%), Positives = 118/259 (45%), Gaps = 15/259 (5%)

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           +++  + E++     ++  G +PD + F  +LKA    +       +LG+ +HA + K  
Sbjct: 69  VRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQD-----MDLGKQIHAHVYKFG 123

Query: 182 VKADDV-LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
              D V +   LV+ Y K G       VFD + E+N +   S+IS   S    E A E F
Sbjct: 124 YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAF 183

Query: 241 RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG-------SALVDM 293
           R  +++D+   +  +   S+++  +   +     + K V    ++ G       + LV M
Sbjct: 184 RCMLDEDVEPSSFTL--VSVALACSNFPMPEGLLMGKQVHAYGLRKGELNSFIINTLVAM 241

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           Y K GK+  ++ +    + +++ TW +++    +N    +ALE    M    V+P+  T 
Sbjct: 242 YGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTI 301

Query: 354 LGALSACGHAGLVDKGREI 372
              L AC H  ++  G+E+
Sbjct: 302 SSVLPACSHLEMLRTGKEL 320



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 11/164 (6%)

Query: 270 EVHCQLIKNVFFED-VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
           ++H  + K  +  D V + + LV++Y KCG      +VFD + ++N  +W S+I      
Sbjct: 114 QIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSF 173

Query: 329 GNPNQALELF-CMMQECCVQPNYVTFLGALSACGH----AGLVDKGREIFESMERDYSMK 383
                ALE F CM+ E  V+P+  T +    AC +     GL+  G+++     R   + 
Sbjct: 174 EKWEMALEAFRCMLDE-DVEPSSFTLVSVALACSNFPMPEGLL-MGKQVHAYGLRKGELN 231

Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
             + +   +V + G+ G L  + K +L   E  +   W  +LSS
Sbjct: 232 SFIIN--TLVAMYGKMGKLASS-KVLLGSFEGRDLVTWNTVLSS 272


>gi|296086269|emb|CBI31710.3| unnamed protein product [Vitis vinifera]
          Length = 649

 Score =  254 bits (650), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 151/465 (32%), Positives = 247/465 (53%), Gaps = 49/465 (10%)

Query: 65  LKIHAHITKTGVKPNTNIS--IKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           L+IHA I  +G K + +I+  I L  L  KC     A  +FD  P  +   +N MI  Y 
Sbjct: 69  LQIHAQIIVSGFKHHHSITHLINLYSLFHKC---DLARSVFDSTPNPSRILWNSMIRAYT 125

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA-QILKCD 181
           ++ Q  E+L +   +V  G    G    + + A       V +   +G +  A ++    
Sbjct: 126 RSKQYNEALEMYYCMVEKG----GLERDVFIGAGL-----VDMYSKMGDLKRAREVFDKM 176

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
            K D V + A++    +      AR VFD M++++ +   +M++G+   G   +  E+F 
Sbjct: 177 PKRDVVAWNAMIAGLSQSEDPYVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFD 236

Query: 242 K----TVEKDIVVYNAMIEGYS----------------------ISIETA-------RKA 268
           K     V  ++++   M  G++                      +S+  A       R+ 
Sbjct: 237 KMKLGNVTWNVIIAAYMQNGHAKEAISSFHQMRLENFHPNSVTFVSVLPAAAYLAAFREG 296

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
           +  H  +I+  F  +  +G++L+DMYAKCG++D + ++F+ M  K+  +W +M+ GY  +
Sbjct: 297 MAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVH 356

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G+ ++A+ LF +MQE  VQ + V+F+  LSAC HAGLV++GR+IF SM   Y +KP +EH
Sbjct: 357 GHGDRAIALFSLMQESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEH 416

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
           YACMVDLLGRAG  ++ L F+  MP +P++ VW ALL SCR+H +V++  +A + + KL 
Sbjct: 417 YACMVDLLGRAGLFDETLGFIKVMPVEPDAGVWGALLGSCRMHSNVKLGEVALDHLVKLE 476

Query: 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             + P  +V LS+  A +G+W    + R KM   G+ K  GCSWV
Sbjct: 477 PRN-PAHFVVLSSIYAQSGRWADAGKARSKMNDLGLKKTPGCSWV 520



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 69/137 (50%), Gaps = 4/137 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+  HA I + G   NT +   L+ ++ KCG L Y+ ++F+E+  +   ++N M++GY  
Sbjct: 296 GMAFHACIIQMGFLSNTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAV 355

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G  + +++L   +  S  + D  +F  +L A   CR +  L     ++ H+   K  +K
Sbjct: 356 HGHGDRAIALFSLMQESQVQIDSVSFVSVLSA---CR-HAGLVEEGRKIFHSMSDKYHIK 411

Query: 184 ADDVLYTALVDSYVKGG 200
            D   Y  +VD   + G
Sbjct: 412 PDLEHYACMVDLLGRAG 428


>gi|224123726|ref|XP_002330193.1| predicted protein [Populus trichocarpa]
 gi|222871649|gb|EEF08780.1| predicted protein [Populus trichocarpa]
          Length = 485

 Score =  254 bits (650), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 160/468 (34%), Positives = 236/468 (50%), Gaps = 48/468 (10%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALK---YAGQMFDELPQRTLSAYNYMIAGYL 122
           +IHAH  + G+     I    + +   CG+L    YA ++F +    T+  +N MI GY 
Sbjct: 27  EIHAHFLRHGLNQLNQILSHFVSI---CGSLNKMAYANRIFKQTQNPTIILFNAMIKGYS 83

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            NG  EES  L   + + G  PD YT + +LKA   C S   L   LG+ +H ++L    
Sbjct: 84  LNGPFEESFRLFSSMKNRGIWPDEYTLAPLLKA---CSSLGVL--QLGKCMHKEVLVVGF 138

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           +    +   +++ Y   G    A  VFD M +++VI    MI GF  +G V+    +FR+
Sbjct: 139 EGFSAIRIGVIELYSSCGVMEDAEKVFDEMYQRDVIVWNLMIHGFCKRGDVDMGLCLFRQ 198

Query: 243 TVEKDIVVYNAMIE---------------------GYSISIETARKALEVHCQL------ 275
             ++ +V +N MI                      G+     T    L +  +L      
Sbjct: 199 MRKRSVVSWNIMISCLAQSRRDSEALGLFHDMLDWGFKPDEATVVTVLPICARLGSVDVG 258

Query: 276 --------IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
                      ++ + V +G+ALVD Y K G  + ARRVFD M +KNV +W ++I G   
Sbjct: 259 KWIHSYAKSSGLYRDFVAVGNALVDFYNKSGMFETARRVFDEMPRKNVISWNTLISGLAL 318

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           NGN    +EL   M    V+PN  TF+G LS C HAGL ++GRE+  SM   + ++PK+E
Sbjct: 319 NGNGELGVELLEEMMNEGVRPNDATFVGVLSCCAHAGLFERGRELLASMVEHHQIEPKLE 378

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMP-EKPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446
           HY CMVDLLGR+G + +A   +  MP   PN+ +W +LLS+CR H DVE+A++A  E+  
Sbjct: 379 HYGCMVDLLGRSGCVREAYDLIRIMPGGAPNAALWGSLLSACRTHGDVELAHLAVKELID 438

Query: 447 LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVG 494
           L   +  G YV LSN  A   +WD V  +R  M+ + V K  G S +G
Sbjct: 439 LEPWN-SGNYVLLSNMYAEEERWDKVANVRGMMREKNVKKTPGQSVIG 485



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/389 (23%), Positives = 150/389 (38%), Gaps = 87/389 (22%)

Query: 11  VFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAH 70
           +FSS  NR   + P   T  P L+   SL            LQ          G  +H  
Sbjct: 94  LFSSMKNR--GIWPDEYTLAPLLKACSSLG----------VLQ---------LGKCMHKE 132

Query: 71  ITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVE-- 128
           +   G +  + I I ++ L+  CG ++ A ++FDE+ QR +  +N MI G+ K G V+  
Sbjct: 133 VLVVGFEGFSAIRIGVIELYSSCGVMEDAEKVFDEMYQRDVIVWNLMIHGFCKRGDVDMG 192

Query: 129 -----------------------------ESLSLVRKLVSSGERPDGYTFSMILKASTCC 159
                                        E+L L   ++  G +PD  T   +L    C 
Sbjct: 193 LCLFRQMRKRSVVSWNIMISCLAQSRRDSEALGLFHDMLDWGFKPDEATVVTVL--PICA 250

Query: 160 RSNVPLPRNLGRMVHAQILKCDVKADDV-LYTALVDSYVKGGKTSYARIVFDMMLEKNVI 218
           R       ++G+ +H+      +  D V +  ALVD Y K G    AR VFD M  KNVI
Sbjct: 251 RLG---SVDVGKWIHSYAKSSGLYRDFVAVGNALVDFYNKSGMFETARRVFDEMPRKNVI 307

Query: 219 CSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKN 278
              ++ISG    G  E   E+  + + + +   +A   G             + C     
Sbjct: 308 SWNTLISGLALNGNGELGVELLEEMMNEGVRPNDATFVGV------------LSCCAHAG 355

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
           +F    +L +++V+                H  +  +  +  M+D  G++G   +A +L 
Sbjct: 356 LFERGRELLASMVE---------------HHQIEPKLEHYGCMVDLLGRSGCVREAYDLI 400

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVD 367
            +M      PN   +   LSAC   G V+
Sbjct: 401 RIMPGGA--PNAALWGSLLSACRTHGDVE 427



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 40/179 (22%), Positives = 78/179 (43%), Gaps = 10/179 (5%)

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
           ET  +  E+H   +++   +  ++ S  V +     K+  A R+F   Q   +  + +MI
Sbjct: 20  ETRTQLREIHAHFLRHGLNQLNQILSHFVSICGSLNKMAYANRIFKQTQNPTIILFNAMI 79

Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382
            GY  NG   ++  LF  M+   + P+  T    L AC   G++  G+ + + +     +
Sbjct: 80  KGYSLNGPFEESFRLFSSMKNRGIWPDEYTLAPLLKACSSLGVLQLGKCMHKEV-----L 134

Query: 383 KPKMEHYACM----VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
               E ++ +    ++L    G +E A K   EM ++ +  VW  ++       DV+M 
Sbjct: 135 VVGFEGFSAIRIGVIELYSSCGVMEDAEKVFDEMYQR-DVIVWNLMIHGFCKRGDVDMG 192


>gi|359487569|ref|XP_002277031.2| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Vitis vinifera]
          Length = 703

 Score =  254 bits (650), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 147/437 (33%), Positives = 229/437 (52%), Gaps = 79/437 (18%)

Query: 94  GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
           G L  A ++FDE+P+R + ++  MI+GY++NGQV+    + RKL                
Sbjct: 185 GRLAEARELFDEMPRRNVISWTTMISGYVQNGQVD----VARKLFEV------------- 227

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
                      +P                + ++V +TA++  Y +GG+   A  +FD M 
Sbjct: 228 -----------MP----------------EKNEVSWTAMLMGYTQGGRIEEASELFDAMP 260

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS-------------- 259
            K V+   +MI GF   G V  A ++F +  EKD   ++AMI+ Y               
Sbjct: 261 VKAVVACNAMILGFGQNGEVAKARQVFDQIREKDDGTWSAMIKVYERKGFEVEALNLFAL 320

Query: 260 -------------ISIETARKAL-------EVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
                        IS+ +   +L       +VH +L+K+ F  DV + S L+ MY KCG 
Sbjct: 321 MQREGVQSNFPSLISVLSVCASLASLDHGRQVHAELVKSQFDSDVFVASVLITMYVKCGD 380

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +  AR++FD    K++  W S+I GY ++G   +AL++F  M    +  + VTF+G LSA
Sbjct: 381 LVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLSA 440

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C + G V +G EIFESM+  Y ++PK EHYACMVDLLGRAG +  A+  + +MP + ++ 
Sbjct: 441 CSYTGKVKEGLEIFESMKSKYLVEPKTEHYACMVDLLGRAGLVNDAMDLIQKMPVEADAI 500

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +W ALL +CR H ++ +A +AA ++ +L   +  G Y+ LSN  A+ G+W  V ELR  M
Sbjct: 501 IWGALLGACRTHMNMNLAEVAAKKLLQLEPKN-AGPYILLSNIYASKGRWGDVAELRRNM 559

Query: 480 KLRGVLKDTGCSWVGTE 496
           +++ V K  GCSW+  E
Sbjct: 560 RVKKVSKSPGCSWIEVE 576



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 162/340 (47%), Gaps = 67/340 (19%)

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149
           + + G ++ A ++FDE+P + + ++N M+AGY +N +  E+  L  K+      P+  T 
Sbjct: 26  YARIGQIESARRVFDEMPDKGIVSWNSMVAGYFQNNRPREARYLFDKM------PERNTV 79

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVF 209
           S                                      +  L+  YVK    S AR  F
Sbjct: 80  S--------------------------------------WNGLISGYVKNRMVSEARKAF 101

Query: 210 DMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY--SISIETARK 267
           D M E+NV+  T+M+ G++ +G V +AE +F +  EK++V +  M+ G      I+ AR 
Sbjct: 102 DTMPERNVVSWTAMVRGYVQEGLVSEAETLFWQMPEKNVVSWTVMLGGLIQVRRIDEARG 161

Query: 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
             ++       +  +DV   + ++  Y + G++ +AR +FD M ++NV +WT+MI GY +
Sbjct: 162 LFDI-------MPVKDVVARTNMISGYCQEGRLAEARELFDEMPRRNVISWTTMISGYVQ 214

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           NG  + A +LF +M E     N V++   L      G +++  E+F++M       P   
Sbjct: 215 NGQVDVARKLFEVMPE----KNEVSWTAMLMGYTQGGRIEEASELFDAM-------PVKA 263

Query: 388 HYAC--MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
             AC  M+   G+ G + +A +   ++ EK +   W+A++
Sbjct: 264 VVACNAMILGFGQNGEVAKARQVFDQIREKDDG-TWSAMI 302



 Score = 75.9 bits (185), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 64/284 (22%), Positives = 129/284 (45%), Gaps = 39/284 (13%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           +L+ + + G ++ A ++FD +P + + A N MI G+ +NG+V ++  +  ++    E+ D
Sbjct: 239 MLMGYTQGGRIEEASELFDAMPVKAVVACNAMILGFGQNGEVAKARQVFDQI---REKDD 295

Query: 146 GYTFSMI-----------------LKASTCCRSNVP------------LPRNLGRMVHAQ 176
           G   +MI                 L      +SN P               + GR VHA+
Sbjct: 296 GTWSAMIKVYERKGFEVEALNLFALMQREGVQSNFPSLISVLSVCASLASLDHGRQVHAE 355

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
           ++K    +D  + + L+  YVK G    AR +FD    K+++   S+I+G+   G VE+A
Sbjct: 356 LVKSQFDSDVFVASVLITMYVKCGDLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEA 415

Query: 237 EEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE-DVKLGSALV 291
            ++F +     +  D V +  ++   S + +  ++ LE+   +      E   +  + +V
Sbjct: 416 LQVFHEMCSSGMATDGVTFVGVLSACSYTGKV-KEGLEIFESMKSKYLVEPKTEHYACMV 474

Query: 292 DMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQA 334
           D+  + G ++DA  +   M  + +   W +++     + N N A
Sbjct: 475 DLLGRAGLVNDAMDLIQKMPVEADAIIWGALLGACRTHMNMNLA 518



 Score = 68.9 bits (167), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 67/123 (54%), Gaps = 9/123 (7%)

Query: 35  NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           N+ SL + L+  +  ++L H         G ++HA + K+    +  ++  L+ +++KCG
Sbjct: 329 NFPSLISVLSVCASLASLDH---------GRQVHAELVKSQFDSDVFVASVLITMYVKCG 379

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
            L  A Q+FD    + +  +N +I GY ++G VEE+L +  ++ SSG   DG TF  +L 
Sbjct: 380 DLVKARQIFDRFSPKDIVMWNSIITGYAQHGLVEEALQVFHEMCSSGMATDGVTFVGVLS 439

Query: 155 AST 157
           A +
Sbjct: 440 ACS 442


>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  254 bits (650), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 144/434 (33%), Positives = 244/434 (56%), Gaps = 13/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H    + G++ +  I+  L+ ++ K G    A  +F +L  + + ++N MIA + +
Sbjct: 162 GREVHGSSIRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQ 221

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N     ++ LVR++   GE P+  TF+ +L A  C R  +  P   G+ +HA+ +     
Sbjct: 222 NRFELVAVGLVRQMQDYGELPNSVTFTNVLPA--CARMGLVRP---GKEIHARSIHMGCA 276

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +  AL D Y K G    AR VFD  L ++ +    +I G        ++  +F + 
Sbjct: 277 FDLFVSNALTDMYAKSGHLKLARNVFDTSL-RDEVSYNILIVGHSQTSDCSESLSLFSEM 335

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               +++D V +   +   + ++   ++  E+H  L++ +F   + + ++L+D Y KCG+
Sbjct: 336 QLMGLKQDNVSFMGALSACA-NLTAIKQGKEIHGFLLRKLFHIHLFVANSLLDFYTKCGR 394

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I  AR +FD M  K+V +W +MI GYG  G  + A++LF  M++  V+ + V+F+  LSA
Sbjct: 395 IGLARNIFDRMTNKDVASWNTMILGYGMLGELDTAIDLFENMRKDDVEYDSVSFIAVLSA 454

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H GL++KGR+ F+ + +   ++P   HYACMVDLLGRAG +E+A + +  +P  P+++
Sbjct: 455 CSHGGLLEKGRKYFDEL-KARGIEPTQMHYACMVDLLGRAGLMEEAAELIKGLPIVPDAN 513

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +W ALL +CR++ ++E+A  AA  +F+L   +  G Y  LSN  A  G+WD    +RE M
Sbjct: 514 IWGALLGACRIYGNLELAAWAAEHLFELKP-EHSGYYTLLSNMYAETGRWDEANRIRELM 572

Query: 480 KLRGVLKDTGCSWV 493
           K RGV K  GCSWV
Sbjct: 573 KSRGVKKSPGCSWV 586



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 90/319 (28%), Positives = 162/319 (50%), Gaps = 22/319 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H  + K G + +  +   LL  +  CG L+ AG++FDE+P++ L ++N MI  +  
Sbjct: 60  GREVHGSVVKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSV 119

Query: 124 NG-QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL-----GRMVHAQI 177
           NG    ++L + R ++  G +P+  T S  L          P+   L     GR VH   
Sbjct: 120 NGWHYRDALDMFRLMIDEGLKPNSITISSFL----------PVLVELEFFKAGREVHGSS 169

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
           ++  +++D  +  +L+D Y K G ++ A  VF  +  KNV+   +MI+ F    F   A 
Sbjct: 170 IRMGLESDIFIANSLIDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAV 229

Query: 238 EIFRKTVE----KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDM 293
            + R+  +     + V +  ++   +  +   R   E+H + I      D+ + +AL DM
Sbjct: 230 GLVRQMQDYGELPNSVTFTNVLPACA-RMGLVRPGKEIHARSIHMGCAFDLFVSNALTDM 288

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           YAK G +  AR VFD   +  V ++  +I G+ +  + +++L LF  MQ   ++ + V+F
Sbjct: 289 YAKSGHLKLARNVFDTSLRDEV-SYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSF 347

Query: 354 LGALSACGHAGLVDKGREI 372
           +GALSAC +   + +G+EI
Sbjct: 348 MGALSACANLTAIKQGKEI 366



 Score =  121 bits (303), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 88/287 (30%), Positives = 135/287 (47%), Gaps = 20/287 (6%)

Query: 114 YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMV 173
           +N +I GY   G V   L +  ++V  G RPD +TF  +LKA   C     + +  GR V
Sbjct: 10  WNTLIRGYSIAG-VGGGLEVYNQMVRIGVRPDDHTFPFVLKA---CADAFEVRK--GREV 63

Query: 174 HAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGF- 232
           H  ++K   ++D  +   L+  Y   G    A  VFD M EK+++   +MI  F   G+ 
Sbjct: 64  HGSVVKLGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWH 123

Query: 233 VEDAEEIFRKTVEKDIVVYNAMIEGYS---ISIETARKALEVHCQLIKNVFFEDVKLGSA 289
             DA ++FR  +++ +   +  I  +    + +E  +   EVH   I+     D+ + ++
Sbjct: 124 YRDALDMFRLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANS 183

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349
           L+DMYAK G   +A  VF  +  KNV +W +MI  + +N     A+ L   MQ+    PN
Sbjct: 184 LIDMYAKSGHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPN 243

Query: 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
            VTF   L AC   GLV  G+EI            +  H  C  DL 
Sbjct: 244 SVTFTNVLPACARMGLVRPGKEI----------HARSIHMGCAFDLF 280



 Score = 46.6 bits (109), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 6/143 (4%)

Query: 311 QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR 370
            +   F W ++I GY   G     LE++  M    V+P+  TF   L AC  A  V KGR
Sbjct: 3   HRTTAFLWNTLIRGYSIAG-VGGGLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGR 61

Query: 371 EIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP----NSDVWAALLS 426
           E+  S+ +    +  +     ++   G  G L  A +   EMPEK     N+ +    ++
Sbjct: 62  EVHGSVVK-LGFESDVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVN 120

Query: 427 SCRLHDDVEMANIAANEIFKLNA 449
                D ++M  +  +E  K N+
Sbjct: 121 GWHYRDALDMFRLMIDEGLKPNS 143


>gi|297596789|ref|NP_001043072.2| Os01g0374200 [Oryza sativa Japonica Group]
 gi|255673241|dbj|BAF04986.2| Os01g0374200 [Oryza sativa Japonica Group]
          Length = 629

 Score =  254 bits (650), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 144/454 (31%), Positives = 241/454 (53%), Gaps = 18/454 (3%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L+A S+P  L           G ++H  I K G+    ++   L+ ++ K G +  A  +
Sbjct: 121 LSAVSVPLGL---------LMGEQMHGLIVKDGLLDFVSVENSLVTMYAKAGCMGAAFHV 171

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           F+   +R    ++ MI GY +NG+ + ++S+  ++ ++G  P  +TF  +L AS+   + 
Sbjct: 172 FESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGA- 230

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
                 +G+  H  ++K   +    + +ALVD Y K G  + A+  FD + E +++  T+
Sbjct: 231 ----LAVGKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTA 286

Query: 223 MISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEG---YSISIETARKALEVHCQLIKNV 279
           M+SG +  G  E+A  ++ +  ++ I+   + I         I       ++H Q++K  
Sbjct: 287 MVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLHTQIVKYG 346

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
                 +GSAL  MY+KCG ++D   VF  +  ++V  W S+I G+ +NG  N AL+LF 
Sbjct: 347 LGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFE 406

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
            M+     P+ +TF+  L AC H GLVD+G E F  M +DY + P+++HYACMVD+L RA
Sbjct: 407 EMKMEGTIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRA 466

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVAL 459
           G L++A  F+  +     + +W  +L +CR   D ++   A   + +L   D   AY+ L
Sbjct: 467 GMLKEAKDFIESITIDHGTCLWRIVLGACRSLRDFDVGAYAGERLMELGTGDSS-AYILL 525

Query: 460 SNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           SN  A+  KW+ V  +R  M+LRGV KD GCSWV
Sbjct: 526 SNIYASQRKWNDVERVRHLMRLRGVNKDPGCSWV 559



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 173/358 (48%), Gaps = 23/358 (6%)

Query: 79  NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLV 138
           N  +   LL ++ K G +  A ++FD +PQR   +++ M+AGY      EE+  L R ++
Sbjct: 46  NVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLML 105

Query: 139 SS--GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196
                E+ + +  + +L A +     VPL   +G  +H  I+K  +     +  +LV  Y
Sbjct: 106 EECPSEKSE-FVATAVLSAVS-----VPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMY 159

Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK--------TVEKDI 248
            K G    A  VF+   E+N I  ++MI+G+   G  + A  +F +        T    +
Sbjct: 160 AKAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFV 219

Query: 249 VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFD 308
            V NA  +  ++++       + H  ++K  F   + + SALVDMYAKCG I DA+  FD
Sbjct: 220 GVLNASSDLGALAV-----GKQAHGLMVKLGFEVQIYVKSALVDMYAKCGCIADAKEGFD 274

Query: 309 HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDK 368
            + + ++  WT+M+ G+ +NG   +AL L+  M +  + P+  T    L AC     ++ 
Sbjct: 275 QLYEVDIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEP 334

Query: 369 GREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           G+++   + + Y +       + +  +  + G+LE  +     +P++ +   W +++S
Sbjct: 335 GKQLHTQIVK-YGLGLGAPVGSALSTMYSKCGNLEDGMSVFRRIPDR-DVIAWNSIIS 390


>gi|296085345|emb|CBI29077.3| unnamed protein product [Vitis vinifera]
          Length = 671

 Score =  254 bits (650), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 141/430 (32%), Positives = 223/430 (51%), Gaps = 40/430 (9%)

Query: 96  LKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           L YA  +F  L     S YN +I     +    E+L L   ++ SG +PD  T+  ++KA
Sbjct: 116 LAYAKTIFHHLQNPPPSLYNSLIRALSSSKTPLEALPLYHTMLQSGLKPDHMTYPFVIKA 175

Query: 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
             C  S+V      G +VH  ++K   + D  + ++L+  Y  G     A+ +F++   +
Sbjct: 176 --CNESSVTW---FGLLVHTHVVKSGFECDSYIVSSLIHLYANGKDLGAAKQLFNLCSAR 230

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI--------------- 260
           +V+   +MI G++    +  A  +F + V +D++ +N MI GY+I               
Sbjct: 231 DVVSWNAMIDGYVKHVEMGHARMVFDRMVCRDVISWNTMINGYAICGKPNEALALFDQMR 290

Query: 261 -------------------SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
                               +    K L +H  +  N    +  +G+ALVDMYAKCGKI 
Sbjct: 291 AVGVKPTEATVVSLLSACAHLGALDKGLHLHTYINDNRIEVNSIVGTALVDMYAKCGKIS 350

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            A +VF+ M+ K+V  W ++I G   +GN  +A +LF  M+E  V+PN +TF+  LSAC 
Sbjct: 351 LATQVFNAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACS 410

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
           HAG+VD+G+++ + M   Y ++PK+EHY C++DLL RAG LE+A++ +  MP +PN    
Sbjct: 411 HAGMVDEGQKLLDCMSSSYGIEPKVEHYGCVIDLLARAGFLEEAMELIGTMPMEPNPSAL 470

Query: 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481
            ALL  CR+H + E+  +    +  L      G Y+ LSN  AAA KWD   ++R  MK+
Sbjct: 471 GALLGGCRIHGNFELGEMVGKRLINLQPC-HSGRYILLSNIYAAAKKWDDARKVRNLMKV 529

Query: 482 RGVLKDTGCS 491
            G+ K  G S
Sbjct: 530 NGISKVPGVS 539



 Score = 61.6 bits (148), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/114 (30%), Positives = 61/114 (53%), Gaps = 3/114 (2%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           T  SL SA  H    D    GL +H +I    ++ N+ +   L+ ++ KCG +  A Q+F
Sbjct: 300 TVVSLLSACAHLGALDK---GLHLHTYINDNRIEVNSIVGTALVDMYAKCGKISLATQVF 356

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           + +  + + A+N +IAG   +G V+E+  L +++  +G  P+  TF  IL A +
Sbjct: 357 NAMESKDVLAWNTIIAGMAIHGNVKEAQQLFKEMKEAGVEPNDITFVAILSACS 410


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  254 bits (649), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 154/474 (32%), Positives = 250/474 (52%), Gaps = 21/474 (4%)

Query: 32  KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHL 91
           +++N     N  T  S+  A+   ++ +    G ++    ++ G++ N  +   L+ ++ 
Sbjct: 312 RMKNGACTPNMYTLVSVSKAVGKLVDVNM---GKEVQNCASELGIEGNVLVGTALIDMYS 368

Query: 92  KCGALKYAGQMFDE--LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149
           KCG+L  A  +FD   +     + +N MI+GY ++G  +E+L L  ++  +G   D YT+
Sbjct: 369 KCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTY 428

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV-LYTALVDSYVKGGKTSYARIV 208
             +  A    +S        GR+VH  +LKC +    V +  A+ D+Y K G     R V
Sbjct: 429 CSVFNAIAASKS-----LQFGRVVHGMVLKCGLDLMVVSVNNAIADAYSKCGFLEDVRKV 483

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS------I 262
           FD M E++++  T++++ +      E+A   F    E+             IS      +
Sbjct: 484 FDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLMREEGFAPNQFTFSSVLISCASLCFL 543

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
           E  R   +VH  L K     +  + SAL+DMYAKCG I +A +VFD +   ++ +WT++I
Sbjct: 544 EYGR---QVHGLLCKAGLDTEKCIESALIDMYAKCGSITEAGKVFDKISNPDIVSWTAII 600

Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382
            GY ++G    AL+LF  M+   ++ N VT L  L AC H G+V++G   F+ ME  Y +
Sbjct: 601 SGYAQHGLVEDALQLFRRMELSGIKANAVTLLCVLFACSHGGMVEEGLFYFQQMEDGYGV 660

Query: 383 KPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAAN 442
            P+MEHYAC++DLLGR G L+ A++F+ +MP +PN  VW  LL  CR+H +VE+  IAA 
Sbjct: 661 VPEMEHYACIIDLLGRVGRLDDAMEFIRKMPMEPNEMVWQTLLGGCRVHGNVELGEIAAR 720

Query: 443 EIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
           +I  +   +    YV LSNT    G ++    LR  MK +GV K+ G SW+  +
Sbjct: 721 KILSIRP-EYSATYVLLSNTYIETGSYEDGLSLRNVMKDQGVKKEPGYSWISVK 773



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 103/400 (25%), Positives = 191/400 (47%), Gaps = 29/400 (7%)

Query: 52  LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL 111
           +Q  I  D+   G  +HA I   G   +  +S  LL ++ K G+++ +  +F+ + +   
Sbjct: 228 IQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQ 287

Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR 171
            ++N MI+G   NG   E+  L  ++ +    P+ YT   + KA         +  N+G+
Sbjct: 288 VSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKA-----VGKLVDVNMGK 342

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS--TSMISGFMS 229
            V     +  ++ + ++ TAL+D Y K G    AR VFD       + +   +MISG+  
Sbjct: 343 EVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMISGYSQ 402

Query: 230 QGFVEDAEEIFRKTVEKDIV--------VYNAMIEGYSISIETARKALEVHCQLIKNVFF 281
            G  ++A E++ +  +  I         V+NA+    S+        + + C L   V  
Sbjct: 403 SGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCGLDLMV-- 460

Query: 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM 341
             V + +A+ D Y+KCG ++D R+VFD M+++++ +WT+++  Y ++    +AL  FC+M
Sbjct: 461 --VSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATFCLM 518

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC----MVDLLG 397
           +E    PN  TF   L +C     ++ GR++   +      K  ++   C    ++D+  
Sbjct: 519 REEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLL-----CKAGLDTEKCIESALIDMYA 573

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           + GS+ +A K V +    P+   W A++S    H  VE A
Sbjct: 574 KCGSITEAGK-VFDKISNPDIVSWTAIISGYAQHGLVEDA 612



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 88/289 (30%), Positives = 149/289 (51%), Gaps = 16/289 (5%)

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           KC   + A  +FDE+PQR + ++  MI G  ++G   +      ++++SG  PD + +S 
Sbjct: 167 KCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGILPDKFAYSA 226

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           I+++     S       LG+MVHAQI+         + T+L++ Y K G    +  VF+M
Sbjct: 227 IIQSCIGLDS-----LELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWVFNM 281

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV 271
           M E N +   +MISG  S G   +A ++F +   K+      M    S+S +   K ++V
Sbjct: 282 MTEHNQVSWNAMISGCTSNGLHLEAFDLFVRM--KNGACTPNMYTLVSVS-KAVGKLVDV 338

Query: 272 HC-QLIKNVFFE-----DVKLGSALVDMYAKCGKIDDARRVFD-HMQQKNVFT-WTSMID 323
           +  + ++N   E     +V +G+AL+DMY+KCG + DAR VFD +     V T W +MI 
Sbjct: 339 NMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNAMIS 398

Query: 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           GY ++G   +ALEL+  M +  +  +  T+    +A   +  +  GR +
Sbjct: 399 GYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVV 447



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 67/241 (27%), Positives = 116/241 (48%), Gaps = 8/241 (3%)

Query: 171 RMVHAQILKCDVKADD--VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM 228
           + VH  +LK + +  D  VL+      Y K  +   A  VFD M ++NV   T MI G  
Sbjct: 138 KAVHGLVLKSNFEDKDLMVLFNHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGST 197

Query: 229 SQGFVEDAEEIFRKTVEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDV 284
             G   D  + F + +   I+     Y+A+I+   I +++      VH Q++   F   +
Sbjct: 198 EHGLFFDGFKFFCEMLNSGILPDKFAYSAIIQS-CIGLDSLELGKMVHAQIVMRGFATHI 256

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
            + ++L++MYAK G I+D+  VF+ M + N  +W +MI G   NG   +A +LF  M+  
Sbjct: 257 FVSTSLLNMYAKLGSIEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNG 316

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQ 404
              PN  T +    A G    V+ G+E+ ++   +  ++  +     ++D+  + GSL  
Sbjct: 317 ACTPNMYTLVSVSKAVGKLVDVNMGKEV-QNCASELGIEGNVLVGTALIDMYSKCGSLHD 375

Query: 405 A 405
           A
Sbjct: 376 A 376


>gi|449451271|ref|XP_004143385.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 623

 Score =  254 bits (649), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 150/455 (32%), Positives = 244/455 (53%), Gaps = 13/455 (2%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           A + P AL+       P  G + H  ITK G      +   L+ ++ K   +  A ++F+
Sbjct: 49  AFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFE 108

Query: 105 E-LPQRTLSA-YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           E    R L+  YN +++GY+ N +  E++ L R++   G   +  T   ++ A   C S 
Sbjct: 109 ENFHSRKLTVCYNALVSGYVSNSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPA---CVS- 164

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
            P+   LG  +H   LK    +D  +    +  Y+K G  +YA+ +FD M  K +I   +
Sbjct: 165 -PINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNA 223

Query: 223 MISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKN 278
           M+SG+   G   +  E++R      V  D V    ++   + ++       EV  ++  +
Sbjct: 224 MVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCA-NLGAQSVGHEVEFKIQAS 282

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
            F  +  L +AL++MYA+CG +  A+ VFD M ++ + +WT++I GYG +G+   A++LF
Sbjct: 283 GFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLF 342

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398
             M    ++P+   F+  LSAC HAGL D+G E F+ M+R+Y ++P  EHY+CMVDLLGR
Sbjct: 343 KEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGR 402

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVA 458
           AG L++A   +  MP KP+  VW ALL +C++H +VE+A +A   + +L   +  G YV 
Sbjct: 403 AGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEP-ENIGYYVL 461

Query: 459 LSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           LSN  + A     V  +R  MK + + KD GCS+V
Sbjct: 462 LSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYV 496



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 179/375 (47%), Gaps = 14/375 (3%)

Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR 171
           + +N  +    K  Q  ++LSL  +++  G+RP+ +TF   LK  +C   ++P+   LG 
Sbjct: 15  TPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALK--SCAALSLPI---LGS 69

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE--KNVICSTSMISGFMS 229
             H QI K     +  + T L+  Y KG     AR VF+      K  +C  +++SG++S
Sbjct: 70  QFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVS 129

Query: 230 QGFVEDAEEIFRKTVEKDIVVYNAMIEGY---SISIETARKALEVHCQLIKNVFFEDVKL 286
                +A  +FR+  E+ + V +  + G     +S         +HC  +K  F  DV +
Sbjct: 130 NSKCSEAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSV 189

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
            +  + MY KCG ++ A+++FD M  K + +W +M+ GY +NG     LEL+  M    V
Sbjct: 190 VNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGV 249

Query: 347 QPNYVTFLGALSACGHAGLVDKGREI-FESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
            P+ VT +G LS+C + G    G E+ F+     ++  P + +   ++++  R G+L +A
Sbjct: 250 HPDPVTLVGVLSSCANLGAQSVGHEVEFKIQASGFTSNPFLNN--ALINMYARCGNLTKA 307

Query: 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465
                 MPE+     W A++    +H   E+A     E+ +        A+V + +  + 
Sbjct: 308 QAVFDGMPERTLVS-WTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSH 366

Query: 466 AGKWDSVTELREKMK 480
           AG  D   E  + MK
Sbjct: 367 AGLTDQGLEYFKMMK 381


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  254 bits (649), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 135/434 (31%), Positives = 250/434 (57%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH+   KTG + +  +S  L+ ++ K G L+ A ++ + L ++ + ++  MIAGY++
Sbjct: 364 GEQIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQ 423

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +   +++L+  +++   G  PD    +  +  S C   N       G  +HA+I      
Sbjct: 424 HECCKDALAAFKEMQKCGIWPDNIGLASAI--SGCAGINA---MRQGLQIHARIYVSGYS 478

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  ++ ALV+ Y + G+   A   F+ +  K+ I    ++SGF   G  E+A ++F + 
Sbjct: 479 GDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRM 538

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               V+ ++  + + +   S ++   ++  ++H ++IK     + ++G+AL+ +Y KCG 
Sbjct: 539 DQSGVKHNVFTFVSALSA-SANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGS 597

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
            +DA+  F  M ++N  +W ++I    ++G   +AL+LF  M++  ++PN VTF+G L+A
Sbjct: 598 FEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAA 657

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H GLV++G   F+SM  +Y ++P+ +HYAC++D+ GRAG L++A KF+ EMP   ++ 
Sbjct: 658 CSHVGLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAM 717

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW  LLS+C++H ++E+   AA  + +L  +D   +YV LSN  A   KW +  ++R+ M
Sbjct: 718 VWRTLLSACKVHKNIEVGEFAAKHLLELEPHD-SASYVLLSNAYAVTEKWANRDQVRKMM 776

Query: 480 KLRGVLKDTGCSWV 493
           + RGV K+ G SW+
Sbjct: 777 RDRGVRKEPGRSWI 790



 Score =  141 bits (356), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 190/385 (49%), Gaps = 12/385 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IHA     G+     +   L+ L+ K G +  A ++F+EL  R   ++  M++GY +NG
Sbjct: 63  EIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNG 122

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             EE+L L R++  +G  P  Y  S +L  S+C ++ +      GR++HAQ  K    ++
Sbjct: 123 LGEEALGLYRQMHRAGVVPTPYVLSSVL--SSCTKAELFAQ---GRLIHAQGYKHGFCSE 177

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT-- 243
             +  A++  Y++ G    A  VF  M  ++ +   ++ISG    G  E A EIF +   
Sbjct: 178 IFVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQF 237

Query: 244 --VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
             +  D V  ++++   + S+   +K  ++H  L K     D  +  +L+D+Y KCG ++
Sbjct: 238 SGLSPDCVTISSLLAACA-SLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVE 296

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            A  +F+   + NV  W  M+  +G+  +  ++ ELFC MQ   ++PN  T+   L  C 
Sbjct: 297 TALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCT 356

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
               +D G +I  S+      +  M     ++D+  + G LE+A + VLEM ++ +   W
Sbjct: 357 CTREIDLGEQI-HSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARR-VLEMLKEKDVVSW 414

Query: 422 AALLSSCRLHDDVEMANIAANEIFK 446
            ++++    H+  + A  A  E+ K
Sbjct: 415 TSMIAGYVQHECCKDALAAFKEMQK 439



 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 185/388 (47%), Gaps = 14/388 (3%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           T   L S L     ++    G  IHA   K G      +   ++ L+L+CG+ + A ++F
Sbjct: 142 TPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERVF 201

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
            ++P R    +N +I+G+ + G  E +L +  ++  SG  PD  T S +L A   C S  
Sbjct: 202 CDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAA---CASLG 258

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
            L +  G  +H+ + K  + +D ++  +L+D YVK G    A ++F+     NV+    M
Sbjct: 259 DLQK--GTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLM 316

Query: 224 ISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
           +  F     +  + E+F +     +  +   Y  ++   + + E      ++H   +K  
Sbjct: 317 LVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGE-QIHSLSVKTG 375

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
           F  D+ +   L+DMY+K G ++ ARRV + +++K+V +WTSMI GY ++     AL  F 
Sbjct: 376 FESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFK 435

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME-RDYSMKPKMEHYACMVDLLGR 398
            MQ+C + P+ +    A+S C     + +G +I   +    YS    +  +  +V+L  R
Sbjct: 436 EMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYSGDVSI--WNALVNLYAR 493

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALLS 426
            G + +A     E+  K +   W  L+S
Sbjct: 494 CGRIREAFSSFEEIEHK-DEITWNGLVS 520



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/111 (29%), Positives = 56/111 (50%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +  SAL    N      G +IHA + KTG    T +   L+ L+ KCG+ + A   F E+
Sbjct: 549 TFVSALSASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDAKMEFSEM 608

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
            +R   ++N +I    ++G+  E+L L  ++   G +P+  TF  +L A +
Sbjct: 609 SERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACS 659


>gi|356523586|ref|XP_003530418.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  254 bits (649), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 172/514 (33%), Positives = 264/514 (51%), Gaps = 51/514 (9%)

Query: 2   PNLSRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNY--DSLSNP--LTATSLPSALQHYIN 57
           PN+    S + +  HN  +  +P N  F  +      D+ + P  L A + PS+L     
Sbjct: 82  PNVHLYNSIIRAHAHNTSHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSL----- 136

Query: 58  SDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM--FDELPQRTLSAYN 115
              P   + IHAH+ K G   +  +   L+  + +CG+    G M  F  + +R +  +N
Sbjct: 137 ---PLVRM-IHAHVEKFGFYGDIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWN 192

Query: 116 YMIAGYLKNGQVEESLSLV-----RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLG 170
            MI G ++ G++E +  L      R +VS     DGY      KA    R+     R   
Sbjct: 193 SMIGGLVRCGELEGACKLFDEMPERDMVSWNTMLDGYA-----KAGEMDRAFELFERMPQ 247

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           R +             V ++ +V  Y KGG    AR++FD    KNV+  T++I+G+  +
Sbjct: 248 RNI-------------VSWSTMVCGYSKGGDMDMARVLFDRCPAKNVVLWTTIIAGYAEK 294

Query: 231 GFVEDAEEIFRKTVEKDIVVYNAMIEGYSISI-----ETARKAL--EVHCQLIKNVFFED 283
           GFV +A E++ K  E  +       +G+ ISI     E+    L   +H  + +  F   
Sbjct: 295 GFVREATELYGKMEEAGL----RPDDGFLISILAACAESGMLGLGKRIHASMRRWRFRCG 350

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
            K+ +A +DMYAKCG +D A  VF  M  +K+V +W SMI G+  +G+  +ALELF  M 
Sbjct: 351 TKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSRMV 410

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
               +P+  TF+G L AC HAGLV++GR+ F SME+ Y + P++EHY CM+DLLGR G L
Sbjct: 411 PEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHL 470

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
           ++A   +  MP +PN+ +   LL++CR+H+DV+ A     ++FK+   D PG Y  LSN 
Sbjct: 471 KEAFTLLRSMPMEPNAIILGTLLNACRMHNDVDFARAVCEQLFKVEPTD-PGNYSLLSNI 529

Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
            A AG W +V  +R +M   G  K +G S +  E
Sbjct: 530 YAQAGDWMNVANVRLQMMNTGGQKPSGASSIEVE 563



 Score =  151 bits (382), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 104/375 (27%), Positives = 182/375 (48%), Gaps = 14/375 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN- 124
           +IHA + K  +  +  ++ KL+     C  L  A  +F+ +P   +  YN +I  +  N 
Sbjct: 39  QIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNT 98

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
                  +   ++  +G  PD +T+  +LKA   C     LP  L RM+HA + K     
Sbjct: 99  SHPSLPFNAFFQMQKNGLFPDNFTYPFLLKA---CTGPSSLP--LVRMIHAHVEKFGFYG 153

Query: 185 DDVLYTALVDSYVKGGKTSY--ARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           D  +  +L+DSY + G      A  +F  M E++V+   SMI G +  G +E A ++F +
Sbjct: 154 DIFVPNSLIDSYSRCGSAGLDGAMSLFLAMKERDVVTWNSMIGGLVRCGELEGACKLFDE 213

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
             E+D+V +N M++GY+ + E  R       +L + +   ++   S +V  Y+K G +D 
Sbjct: 214 MPERDMVSWNTMLDGYAKAGEMDRAF-----ELFERMPQRNIVSWSTMVCGYSKGGDMDM 268

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           AR +FD    KNV  WT++I GY + G   +A EL+  M+E  ++P+    +  L+AC  
Sbjct: 269 ARVLFDRCPAKNVVLWTTIIAGYAEKGFVREATELYGKMEEAGLRPDDGFLISILAACAE 328

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
           +G++  G+ I  SM R +  +   +     +D+  + G L+ A      M  K +   W 
Sbjct: 329 SGMLGLGKRIHASMRR-WRFRCGTKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWN 387

Query: 423 ALLSSCRLHDDVEMA 437
           +++    +H   E A
Sbjct: 388 SMIQGFAMHGHGEKA 402



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 49/219 (22%), Positives = 97/219 (44%), Gaps = 9/219 (4%)

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN- 328
           ++H Q++K    +D+ +   L+  ++ C  +  A  VF+H+   NV  + S+I  +  N 
Sbjct: 39  QIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNT 98

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
            +P+     F  MQ+  + P+  T+   L AC     +   R I   +E+ +     +  
Sbjct: 99  SHPSLPFNAFFQMQKNGLFPDNFTYPFLLKACTGPSSLPLVRMIHAHVEK-FGFYGDIFV 157

Query: 389 YACMVDLLGRAGS--LEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446
              ++D   R GS  L+ A+   L M E+ +   W +++       ++E     A ++F 
Sbjct: 158 PNSLIDSYSRCGSAGLDGAMSLFLAMKER-DVVTWNSMIGGLVRCGELE----GACKLFD 212

Query: 447 LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485
                   ++  + +  A AG+ D   EL E+M  R ++
Sbjct: 213 EMPERDMVSWNTMLDGYAKAGEMDRAFELFERMPQRNIV 251


>gi|345505212|gb|AEN99830.1| chlororespiratory reduction 4, partial [Brassica oleracea]
          Length = 590

 Score =  254 bits (649), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 150/496 (30%), Positives = 246/496 (49%), Gaps = 60/496 (12%)

Query: 40  SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYA 99
           S P+   SL  AL+          G ++H  + KTG   +  +   L+ L++KCG L +A
Sbjct: 101 SVPVDKFSLSLALKACSRLGFVKEGTQVHGFLIKTGTWSDLFLQNCLIGLYIKCGFLGFA 160

Query: 100 GQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV-------RKLVSSGERPDGYTFSMI 152
            Q+FD +P+R   +YN MI GY+K G VE +  L        R L++      GY     
Sbjct: 161 RQVFDRMPERDSVSYNSMIDGYVKCGLVESAGELFDLMPREKRNLITWNSMIGGYA---- 216

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
                         R  G  V  ++     + D + + +++  YVK G+   A+ +F++M
Sbjct: 217 -------------QRADGVDVAEKLFDEMPEKDLISWNSMIGGYVKHGRIEDAKGLFNVM 263

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY-------------- 258
             ++V+    MI G+   G V  A+ +F +   +D+V YN+M+ GY              
Sbjct: 264 PRRDVVTWAIMIDGYGKLGLVHVAKTLFDQMPHRDVVAYNSMMSGYVQNRYHMEALEVFN 323

Query: 259 -------------------SISIETAR--KALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
                              S   +  R  KA+++H  +++  F    KLG AL+DMY+KC
Sbjct: 324 HMEKESHLTPDETSLVIVLSAIAQLGRLSKAIDMHLYIVEKQFPLSGKLGVALIDMYSKC 383

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G I  A RVF+ ++ K++  W +MI G   +G    A ++   ++   ++P+++TF+G L
Sbjct: 384 GSIQHAMRVFEGIESKSIDHWNAMIGGLAVHGLGESAFDMLFQIERRSIKPDHITFVGVL 443

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           +AC H+GLV +G   FE M R + ++P+++HY CMVD+L R+GS++ A   +  MP +PN
Sbjct: 444 NACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGCMVDILARSGSIKLARNLIEGMPIEPN 503

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
             +W   L++C  H + E   + A  +  L     P +YV LSN  A+ G W  V  +R 
Sbjct: 504 DVIWRTFLTACSHHKEFETGELVAKHLI-LXGGYNPSSYVLLSNMYASNGMWKDVRRVRT 562

Query: 478 KMKLRGVLKDTGCSWV 493
            MK + + K  GCSW+
Sbjct: 563 MMKEKNIEKIPGCSWI 578



 Score =  118 bits (296), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 114/480 (23%), Positives = 216/480 (45%), Gaps = 70/480 (14%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGAL-------KYAGQMFDELPQRTLSA----- 113
           K+HA +  TG+  N +++ ++++      A        ++A  +F E    +        
Sbjct: 13  KLHARLITTGLIKNPDLTTRIVLAFASASASSRRPFLAEFARCVFHEHHVSSSGEVEDPF 72

Query: 114 -YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRM 172
            +N +I  +       ++L L+  ++ S    D ++ S+ LKA  C R         G  
Sbjct: 73  LWNVVIKSHSHGVDPRKALFLLCLMLESSVPVDKFSLSLALKA--CSRLGFV---KEGTQ 127

Query: 173 VHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGF 232
           VH  ++K    +D  L   L+  Y+K G   +AR VFD M E++ +   SMI G++  G 
Sbjct: 128 VHGFLIKTGTWSDLFLQNCLIGLYIKCGFLGFARQVFDRMPERDSVSYNSMIDGYVKCGL 187

Query: 233 VEDAEEIF--RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSAL 290
           VE A E+F      +++++ +N+MI GY+   +     ++V  +L   +  +D+   +++
Sbjct: 188 VESAGELFDLMPREKRNLITWNSMIGGYAQRAD----GVDVAEKLFDEMPEKDLISWNSM 243

Query: 291 VDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG-----------NPN------- 332
           +  Y K G+I+DA+ +F+ M +++V TW  MIDGYGK G            P+       
Sbjct: 244 IGGYVKHGRIEDAKGLFNVMPRRDVVTWAIMIDGYGKLGLVHVAKTLFDQMPHRDVVAYN 303

Query: 333 -------------QALELFCMMQ-ECCVQPNYVTFLGALSACGHAGLVDKGREI-FESME 377
                        +ALE+F  M+ E  + P+  + +  LSA    G + K  ++    +E
Sbjct: 304 SMMSGYVQNRYHMEALEVFNHMEKESHLTPDETSLVIVLSAIAQLGRLSKAIDMHLYIVE 363

Query: 378 RDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           + + +  K+     ++D+  + GS++ A++ V E  E  + D W A++    +H    + 
Sbjct: 364 KQFPLSGKLG--VALIDMYSKCGSIQHAMR-VFEGIESKSIDHWNAMIGGLAVHG---LG 417

Query: 438 NIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE-------LREKMKLRGVLKDTGC 490
             A + +F++        ++     L A      V E       +R K K+   L+  GC
Sbjct: 418 ESAFDMLFQIERRSIKPDHITFVGVLNACSHSGLVKEGLLCFELMRRKHKIEPRLQHYGC 477


>gi|224124974|ref|XP_002319471.1| predicted protein [Populus trichocarpa]
 gi|222857847|gb|EEE95394.1| predicted protein [Populus trichocarpa]
          Length = 703

 Score =  254 bits (649), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 153/410 (37%), Positives = 230/410 (56%), Gaps = 31/410 (7%)

Query: 94  GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
           G L  A ++FDE+PQR + A+  MI+GY  N +V+    + RKL       +  T++ +L
Sbjct: 185 GRLSEAREIFDEMPQRNVVAWTSMISGYAMNNKVD----VARKLFEVMPDKNEVTWTAML 240

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKG----GKTSYARIVF 209
           K  T  RS        GR+  A  L    KA  V   A  +  + G    G+   AR VF
Sbjct: 241 KGYT--RS--------GRINEAAEL---FKAMPVKPVAACNGMIMGFGLNGEVGKARWVF 287

Query: 210 DMMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSI--SIE 263
           D M EK+    +++I  +  +GF  +A  +F    R+ V  +   + ++I   S+  S+ 
Sbjct: 288 DQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGVRPN---FPSIISILSVCGSLA 344

Query: 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMID 323
           +     +VH QL+++ F  D+ + S L+ MY KCG +   +RVFD    K++  W S+I 
Sbjct: 345 SLDHGRQVHSQLVRSHFDLDIYVSSVLITMYIKCGDLVTGKRVFDRFSSKDIVMWNSIIA 404

Query: 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK 383
           GY ++G   +ALE+F  M      P+ +TF+G LSACG+ G V +G EIFESM+  Y + 
Sbjct: 405 GYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYTGKVKEGLEIFESMKSKYQVD 464

Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANE 443
            K EHYACMVDLLGRAG L +A+  +  MP + ++ VW ALLS+CR H ++++A IAA +
Sbjct: 465 QKTEHYACMVDLLGRAGKLNEAMNLIENMPVEADAIVWGALLSACRTHKNLDLAEIAAKK 524

Query: 444 IFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           + +L  +   G Y+ LSN  A+  +W  V ELR+ M+ R V K  GCSW+
Sbjct: 525 LLQLEPSS-AGPYILLSNLYASQSRWKDVAELRKTMRARNVSKSPGCSWI 573



 Score =  135 bits (339), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 104/434 (23%), Positives = 204/434 (47%), Gaps = 48/434 (11%)

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL-----VSSGERPDG 146
           + G +  A  +FD+L  +T++++N ++AGY  N +  E+  L  K+     +S      G
Sbjct: 28  RLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQKLFDKMPERNTISWNGLVSG 87

Query: 147 YTFSMILKASTCCRSNVPLPRNL-------------GRMVHAQILKCDVKADDVL-YTAL 192
           Y  + ++  +      +P  RN+             G +  A++L   +   +V+ +T +
Sbjct: 88  YVKNGMISEARKVFDKMP-ERNVVSWTSMVRGYVQEGLIDEAELLFWRMPEKNVVSWTVM 146

Query: 193 VDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN 252
           +   ++ G+   AR +FDM+  K+V+ ST+MI G  S+G + +A EIF +  ++++V + 
Sbjct: 147 LGGLIEDGRVDEARRLFDMIPVKDVVASTNMIGGLCSEGRLSEAREIFDEMPQRNVVAWT 206

Query: 253 AMIEGYSIS--IETARKALEV------------------------HCQLIKNVFFEDVKL 286
           +MI GY+++  ++ ARK  EV                          +L K +  + V  
Sbjct: 207 SMISGYAMNNKVDVARKLFEVMPDKNEVTWTAMLKGYTRSGRINEAAELFKAMPVKPVAA 266

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
            + ++  +   G++  AR VFD M++K+  TW+++I  Y + G   +AL LF +MQ   V
Sbjct: 267 CNGMIMGFGLNGEVGKARWVFDQMKEKDDGTWSALIKIYERKGFELEALALFSLMQREGV 326

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
           +PN+ + +  LS CG    +D GR++   + R +     +   + ++ +  + G L    
Sbjct: 327 RPNFPSIISILSVCGSLASLDHGRQVHSQLVRSH-FDLDIYVSSVLITMYIKCGDLVTG- 384

Query: 407 KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
           K V +     +  +W ++++    H   E A    +E+F   A      ++ + +     
Sbjct: 385 KRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLSACGYT 444

Query: 467 GKWDSVTELREKMK 480
           GK     E+ E MK
Sbjct: 445 GKVKEGLEIFESMK 458



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 71/263 (26%), Positives = 123/263 (46%), Gaps = 23/263 (8%)

Query: 224 ISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFED 283
           IS F   G ++ A  IF     K +  +NA++ GY  +   A        +L   +   +
Sbjct: 23  ISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQ-----KLFDKMPERN 77

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
               + LV  Y K G I +AR+VFD M ++NV +WTSM+ GY + G  ++A  LF  M E
Sbjct: 78  TISWNGLVSGYVKNGMISEARKVFDKMPERNVVSWTSMVRGYVQEGLIDEAELLFWRMPE 137

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC--MVDLLGRAGS 401
                N V++   L      G VD+ R +F+       M P  +  A   M+  L   G 
Sbjct: 138 ----KNVVSWTVMLGGLIEDGRVDEARRLFD-------MIPVKDVVASTNMIGGLCSEGR 186

Query: 402 LEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSN 461
           L +A +   EMP++ N   W +++S   +++ V++    A ++F++  +     + A+  
Sbjct: 187 LSEAREIFDEMPQR-NVVAWTSMISGYAMNNKVDV----ARKLFEVMPDKNEVTWTAMLK 241

Query: 462 TLAAAGKWDSVTELREKMKLRGV 484
               +G+ +   EL + M ++ V
Sbjct: 242 GYTRSGRINEAAELFKAMPVKPV 264



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/223 (24%), Positives = 99/223 (44%), Gaps = 21/223 (9%)

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           ++ F     +    +  +A+ G+ID AR +FD +Q K V +W +++ GY  N  P +A +
Sbjct: 9   RSYFSSSAAITQCQISYFARLGQIDRARNIFDDLQSKTVTSWNAIVAGYFHNKRPAEAQK 68

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVDL 395
           LF  M E     N +++ G +S     G++ + R++F+ M ER+      +  +  MV  
Sbjct: 69  LFDKMPE----RNTISWNGLVSGYVKNGMISEARKVFDKMPERN------VVSWTSMVRG 118

Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA 455
             + G +++A      MPEK N   W  +L        V+     A  +F +       A
Sbjct: 119 YVQEGLIDEAELLFWRMPEK-NVVSWTVMLGGLIEDGRVD----EARRLFDMIPVKDVVA 173

Query: 456 YVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498
              +   L + G+     E+ ++M  R V+     +W    SG
Sbjct: 174 STNMIGGLCSEGRLSEAREIFDEMPQRNVV-----AWTSMISG 211



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 49/212 (23%), Positives = 101/212 (47%), Gaps = 14/212 (6%)

Query: 35  NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           N+ S+ + L+     ++L H         G ++H+ + ++    +  +S  L+ +++KCG
Sbjct: 329 NFPSIISILSVCGSLASLDH---------GRQVHSQLVRSHFDLDIYVSSVLITMYIKCG 379

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
            L    ++FD    + +  +N +IAGY ++G  E++L +  ++ SSG  PD  TF  +L 
Sbjct: 380 DLVTGKRVFDRFSSKDIVMWNSIIAGYAQHGFGEKALEVFHEMFSSGAAPDEITFIGVLS 439

Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA-RIVFDMML 213
           A   C     +   L  +  +   K  V      Y  +VD   + GK + A  ++ +M +
Sbjct: 440 A---CGYTGKVKEGL-EIFESMKSKYQVDQKTEHYACMVDLLGRAGKLNEAMNLIENMPV 495

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
           E + I   +++S   +   ++ AE   +K ++
Sbjct: 496 EADAIVWGALLSACRTHKNLDLAEIAAKKLLQ 527


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  254 bits (649), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 142/435 (32%), Positives = 247/435 (56%), Gaps = 14/435 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H ++  +G + +T     L+ ++ KCG L  A ++FD    +    +N +I GY +
Sbjct: 341 GKFVHKYLIGSGFECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQ 400

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G  +E L    K++    +PD  TF ++L   +          N GR +H  ++K   +
Sbjct: 401 SGYYKEGLESF-KMMKMERKPDSVTFVLLLSIFSQLAD-----INQGRGIHCDVIKFGFE 454

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM-----SQGFVEDAEE 238
           A+ ++  +L+D Y K G+      VF  M   ++I   ++I+  +     + GF +   E
Sbjct: 455 AELIIGNSLLDVYAKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGF-QMINE 513

Query: 239 IFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
           +  + +  D      ++   S+ +   R+  E+H  + K+ F  +V +G+AL++MY+KCG
Sbjct: 514 MRTEGLMPDEATVLGILPMCSL-LAVRRQGKEIHGYIFKSGFESNVPIGNALIEMYSKCG 572

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            +++  +VF +M++K+V TWT++I  +G  G   +AL+ F  M+   V P+ V F+  + 
Sbjct: 573 SLENCIKVFKYMKEKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIF 632

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC H+G+V +G   F+ M+ DY+++P+MEHYAC+VDLL R+G L QA +F+L MP KP++
Sbjct: 633 ACSHSGMVKEGLRFFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDA 692

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            +W ALLS+CR   +  +A   + +I +LN++D  G YV +SN  A  GKWD V  +R  
Sbjct: 693 SLWGALLSACRARGNTNIAQRVSKKILELNSDD-TGYYVLVSNIYATLGKWDQVKTVRNS 751

Query: 479 MKLRGVLKDTGCSWV 493
           MK +G+ K+ G SW+
Sbjct: 752 MKTKGLKKEPGSSWI 766



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 179/371 (48%), Gaps = 20/371 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+ +H  I K G+  +  I   LL ++ K   L+ A ++F ++  +    +N MI GY +
Sbjct: 241 GVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQ 300

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G+ E S+ L   ++  G  PD  + +  ++A  C +S       +G+ VH  ++    +
Sbjct: 301 LGRHEASVKLFMDMID-GFVPDMLSITSTIRA--CGQSG---DLQVGKFVHKYLIGSGFE 354

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR-- 241
            D V    L+D Y K G    A+ VFD    K+ +   S+I+G+   G+ ++  E F+  
Sbjct: 355 CDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMM 414

Query: 242 KTVEK-DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           K   K D V +  ++  +S  +    +   +HC +IK  F  ++ +G++L+D+YAKCG++
Sbjct: 415 KMERKPDSVTFVLLLSIFS-QLADINQGRGIHCDVIKFGFEAELIIGNSLLDVYAKCGEM 473

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           DD  +VF +M   ++ +W ++I       +     ++   M+   + P+  T LG L  C
Sbjct: 474 DDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMC 533

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYA----CMVDLLGRAGSLEQALKFVLEMPEKP 416
               +  +G+EI       Y  K   E        ++++  + GSLE  +K    M EK 
Sbjct: 534 SLLAVRRQGKEI-----HGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMKEK- 587

Query: 417 NSDVWAALLSS 427
           +   W AL+S+
Sbjct: 588 DVVTWTALISA 598



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 101/406 (24%), Positives = 196/406 (48%), Gaps = 21/406 (5%)

Query: 30  PPKL-QNYDSLSNPLTATSLPSALQHYINSDTPFYGLK-IHAHITKTGVKPNTNISIKLL 87
           PPK   N+++   P +   L S+L   ++S      L+ +H+ I  +G+  +   S KL+
Sbjct: 3   PPKFCSNFNNTPEP-SQEFLRSSLLKTLSSAKNTPQLRTVHSLIITSGLSLSVIFSGKLI 61

Query: 88  ILHLKCGALKYAGQMFDEL-PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDG 146
             + +      +  +F  + P   +  +N +I     NG   ++L    ++     +PD 
Sbjct: 62  SKYAQVKDPISSVSVFRSISPTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDA 121

Query: 147 YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR 206
           +TF  ++  ++C R    L   LG +VH   ++   ++D  +  AL+D Y +      AR
Sbjct: 122 FTFPSVI--NSCAR---ILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNAR 176

Query: 207 IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK----TVEKDIVVYNAMIEGYSISI 262
            VF+ M  ++ +   S+ISG+ S GF EDA +++ K     +  D    ++++     S+
Sbjct: 177 YVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACG-SL 235

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
              ++ + VH  + K     DV +G+ L+ MY K  ++ +ARRVF  M  K+  TW +MI
Sbjct: 236 MAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMI 295

Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382
            GY + G    +++LF  M +  V P+ ++    + ACG +G +  G+ + + +      
Sbjct: 296 CGYAQLGRHEASVKLFMDMIDGFV-PDMLSITSTIRACGQSGDLQVGKFVHKYL---IGS 351

Query: 383 KPKMEHYAC--MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
             + +  AC  ++D+  + G L  A + V +  +  +S  W +L++
Sbjct: 352 GFECDTVACNILIDMYAKCGDLLAAQE-VFDTTKCKDSVTWNSLIN 396


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  254 bits (649), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 141/434 (32%), Positives = 248/434 (57%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH+   K G + +  +S  L+ ++ K G L  A ++ D + ++ + ++  MIAGY++
Sbjct: 364 GEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQ 423

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +   +E+L   +++ + G  PD    +  + A    ++      + G  +HA++      
Sbjct: 424 HEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKA-----VHQGSQIHARVYVSGYS 478

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           AD  ++  LV  Y + G +  A   F+ +  K  I    +ISGF   G  E+A ++F K 
Sbjct: 479 ADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMK- 537

Query: 244 VEKDIVVYNAMIEGYSIS----IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           +++    YN      SIS    +   ++  ++H ++IK  +  + ++ +AL+ +Y KCG 
Sbjct: 538 MDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIKTGYTSETEISNALISLYGKCGS 597

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I+DA+  F  M ++N  +W ++I    ++G   +AL+LF  M++  ++P+ VTF+G L+A
Sbjct: 598 IEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTA 657

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H GLV++G   F+SM  ++ + P+ +HYAC+VD+LGRAG L++A +FV EMP   +S 
Sbjct: 658 CSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPIPADSM 717

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW  LLS+C++H ++E+   AA  + +L  +D   +YV LSN  A  GKW S  ++R+ M
Sbjct: 718 VWRTLLSACKVHKNLEIGEFAAKHLLELEPHD-SASYVLLSNAYAVTGKWASRDQIRKIM 776

Query: 480 KLRGVLKDTGCSWV 493
           K RGV K+ G SW+
Sbjct: 777 KDRGVRKEPGRSWI 790



 Score =  150 bits (379), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/459 (23%), Positives = 222/459 (48%), Gaps = 50/459 (10%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H+++ K G+  +  +   LL L++K G ++ A Q+FD   +  +  +N M+  Y +
Sbjct: 263 GKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQ 322

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
              + +S  +  +++++G RP+ +T+  +L+  TC  +       LG  +H+  +K   +
Sbjct: 323 IDDLAKSFDIFYRMLAAGVRPNKFTYPCMLR--TCTHTG---EIGLGEQIHSLTIKNGFQ 377

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +D  +   L+D Y K G    A+ + DM+ EK+V+  TSMI+G++   F ++A E F++ 
Sbjct: 378 SDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEM 437

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               +  D +   + I   +  I+   +  ++H ++  + +  DV + + LV +YA+CG 
Sbjct: 438 QACGIWPDNIGLASAISACA-GIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGI 496

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
             +A   F+ ++ K   TW  +I G+ ++G   +AL++F  M +   + N  TF+ ++SA
Sbjct: 497 SKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISA 556

Query: 360 CGHAGLVDKGREIFES-MERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
             +   + +G++I    ++  Y+ + ++ +   ++ L G+ GS+E A     EM  K N 
Sbjct: 557 SANLADIKQGKQIHARVIKTGYTSETEISN--ALISLYGKCGSIEDAKMDFFEMT-KRNE 613

Query: 419 DVWAALLSSCRLH----------DDVEMANIAANEI---------------------FKL 447
             W  +++ C  H          D ++   +  +++                     FK 
Sbjct: 614 VSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGLCYFKS 673

Query: 448 NAND-----RPGAYVALSNTLAAAGKWDSVTELREKMKL 481
            +N+     RP  Y  + + L  AG+ D      E+M +
Sbjct: 674 MSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMPI 712



 Score =  137 bits (345), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 177/368 (48%), Gaps = 14/368 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH  + K G    T +   L+ L+L+C + + A ++F ++       +N +I+G+ +
Sbjct: 162 GRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQ 221

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G  + +L +  ++  SG  PD  T + +L A   C +   L +  G+ +H+ +LK  + 
Sbjct: 222 CGHGDRALGIFDEMQLSGLSPDSVTIASLLAA---CSAVGDLRK--GKQLHSYLLKAGMS 276

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D ++  +L+D YVK G    A  +FD     NV+    M+  +     +  + +IF + 
Sbjct: 277 LDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRM 336

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               V  +   Y  M+   + + E      ++H   IKN F  D+ +   L+DMY+K G 
Sbjct: 337 LAAGVRPNKFTYPCMLRTCTHTGEIGLGE-QIHSLTIKNGFQSDMYVSGVLIDMYSKYGW 395

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +D A+R+ D +++K+V +WTSMI GY ++    +ALE F  MQ C + P+ +    A+SA
Sbjct: 396 LDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISA 455

Query: 360 CGHAGLVDKGREIFESME-RDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           C     V +G +I   +    YS    +  +  +V L  R G  ++A     E  E    
Sbjct: 456 CAGIKAVHQGSQIHARVYVSGYSADVSI--WNGLVYLYARCGISKEAFS-SFEAIEHKEG 512

Query: 419 DVWAALLS 426
             W  L+S
Sbjct: 513 ITWNGLIS 520



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 183/371 (49%), Gaps = 12/371 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IHA     G+     I   L+ L+ K G ++ A ++F+EL  R   ++  +++GY +NG
Sbjct: 63  EIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNG 122

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             EE++ L R++  SG  P  Y  S IL  S C ++ +     LGR++H Q+ K    ++
Sbjct: 123 LGEEAVRLYREMHRSGVVPTPYVLSSIL--SACTKTEL---FQLGRLIHVQVYKQGFFSE 177

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT-- 243
             +  AL+  Y++      A  VF  ML  + +   ++ISG    G  + A  IF +   
Sbjct: 178 TFVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQL 237

Query: 244 --VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
             +  D V   +++   S ++   RK  ++H  L+K     D  +  +L+D+Y K G I+
Sbjct: 238 SGLSPDSVTIASLLAACS-AVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIE 296

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           +A ++FD   + NV  W  M+  YG+  +  ++ ++F  M    V+PN  T+   L  C 
Sbjct: 297 EALQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCT 356

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
           H G +  G +I  S+      +  M     ++D+  + G L++A + +L+M E+ +   W
Sbjct: 357 HTGEIGLGEQI-HSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQR-ILDMIEEKDVVSW 414

Query: 422 AALLSSCRLHD 432
            ++++    H+
Sbjct: 415 TSMIAGYVQHE 425


>gi|224098357|ref|XP_002311156.1| predicted protein [Populus trichocarpa]
 gi|222850976|gb|EEE88523.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score =  254 bits (649), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 143/437 (32%), Positives = 234/437 (53%), Gaps = 16/437 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H    K  V  + ++   L+ ++ KCG    A  +F+ +P + +  +N MI GY +
Sbjct: 108 GKSMHCCAVKANVDLDISVGTALVSMYAKCGFFALALTLFNRMPCKDVVTWNAMINGYAQ 167

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL--GRMVHAQILKCD 181
            G+   +L +  KL  S   P+  T   +L A         L  +L  G  +H +I+KC 
Sbjct: 168 IGEPFPALEMFHKLQLSELNPNSGTMVGLLPA-------FALLNDLDQGSCIHGKIIKCG 220

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMM-LEKNVICSTSMISGFMSQGFVEDAEEIF 240
            +++  + TAL+D Y K G  S A  +F      K+ +    MI+G+M  G   DA   F
Sbjct: 221 FESECHVKTALIDMYAKCGSLSGAEFLFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAF 280

Query: 241 ----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
                + ++ +IV    ++   +  +   R  + +H  +I+  F     +G+ L+DMYAK
Sbjct: 281 CQMKLENIQPNIVTIVTVLPAVA-HLSALRAGMTLHAYVIRMGFQSKTPVGNCLIDMYAK 339

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG +D + ++F  M+ K+  +W  M+ GY  +G  + A+ELF  MQ+  ++ +  +F+  
Sbjct: 340 CGWLDHSEKIFHEMKNKDTVSWNVMLAGYAVHGRGSCAIELFSRMQDSEIRLDSFSFINV 399

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           LSAC HAGL+ +GR+IF+SM + + ++P +EHYACM DLLGRAG   + L  +  MP +P
Sbjct: 400 LSACRHAGLIGEGRKIFDSMSKQHQLEPDLEHYACMADLLGRAGLFNEVLDLIKSMPMEP 459

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
           ++ VW ALL +  +H +V++A  A + + KL   +    Y ALSNT A +G+W  V   R
Sbjct: 460 DAGVWGALLGASTMHSNVQLAEFALHHLDKLEHKNLT-HYAALSNTYARSGRWADVGNTR 518

Query: 477 EKMKLRGVLKDTGCSWV 493
            K+   G+ K  G SWV
Sbjct: 519 SKITKTGLRKSPGYSWV 535



 Score =  141 bits (356), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 183/372 (49%), Gaps = 11/372 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH    + G+  +  ++  ++ ++ +CG +  A Q+F E+  R L A++ +IA +++
Sbjct: 7   GTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAAFVQ 66

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G  +E+LSL R + + G + +     ++L +   C     L   LG+ +H   +K +V 
Sbjct: 67  SGYPQEALSLFRSMQNEGLQANKV---ILLSSLPACAEVSSL--KLGKSMHCCAVKANVD 121

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  + TALV  Y K G  + A  +F+ M  K+V+   +MI+G+   G    A E+F K 
Sbjct: 122 LDISVGTALVSMYAKCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEMFHKL 181

Query: 244 VEKDIVVYNAMIEGYSIS---IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
              ++   +  + G   +   +    +   +H ++IK  F  +  + +AL+DMYAKCG +
Sbjct: 182 QLSELNPNSGTMVGLLPAFALLNDLDQGSCIHGKIIKCGFESECHVKTALIDMYAKCGSL 241

Query: 301 DDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
             A  +F     +K+  +W  MI GY  +G+   A   FC M+   +QPN VT +  L A
Sbjct: 242 SGAEFLFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVLPA 301

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
             H   +  G  +   + R    + K     C++D+  + G L+ + K   EM  K ++ 
Sbjct: 302 VAHLSALRAGMTLHAYVIR-MGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEMKNK-DTV 359

Query: 420 VWAALLSSCRLH 431
            W  +L+   +H
Sbjct: 360 SWNVMLAGYAVH 371



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 82/165 (49%), Gaps = 12/165 (7%)

Query: 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
           +  E+H    +     DV + + ++ MYA+CG++D A+++F  ++ +++  W+++I  + 
Sbjct: 6   RGTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAAFV 65

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF-----ESMERDYS 381
           ++G P +AL LF  MQ   +Q N V  L +L AC     +  G+ +       +++ D S
Sbjct: 66  QSGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVKANVDLDIS 125

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           +         +V +  + G    AL     MP K +   W A+++
Sbjct: 126 VG------TALVSMYAKCGFFALALTLFNRMPCK-DVVTWNAMIN 163


>gi|255584555|ref|XP_002533004.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527215|gb|EEF29379.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 519

 Score =  254 bits (648), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 135/433 (31%), Positives = 240/433 (55%), Gaps = 40/433 (9%)

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           ++FDE+P+  + +   +I  + +  + EE++ L  +++    +P+ +TF+ ++ +ST  +
Sbjct: 54  ELFDEMPELDVLSVTTLIGRFARQHRYEEAMCLFSRMLLLNIKPNEFTFATVIHSSTGLK 113

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           +       LG+ +HA+ +K  +     + +A++D Y K      AR  F+ + + NV+  
Sbjct: 114 NIY-----LGKQLHARTMKMGLNTIVFVGSAMLDFYAKLCSFEEARNAFEDIQKPNVVSY 168

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS----------ISIETARKAL- 269
           T++I G++ +G ++DA ++F++  E+++V +NAM+ G+S          + IE  R+   
Sbjct: 169 TTLIHGYLKKGKIDDALQLFQEMPERNVVSWNAMVGGFSQMGHNEEAVSLFIEMLREGFM 228

Query: 270 -----------------------EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRV 306
                                    H   +K++   DV + ++LV  YAKCG ++D+  V
Sbjct: 229 PNQSTFPCAITSAANMASLGMGKSFHACAVKSLCTSDVFVCNSLVSFYAKCGSMEDSLLV 288

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           F+ +  +N  +W ++I G+ +NG    A+  F  M+   ++PN VT LG L AC HAGLV
Sbjct: 289 FNELPDRNTVSWNAVICGFAQNGRGEDAVIFFERMRAAGLRPNSVTLLGLLCACNHAGLV 348

Query: 367 DKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           +KG   F  M ++     K EHYACMVDLL R G L++A KF+ ++P  P +  W ALL 
Sbjct: 349 EKGYMYFNQMRQEEPGILKPEHYACMVDLLSRFGRLKEAAKFLHDLPFDPGTGFWKALLG 408

Query: 427 SCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLK 486
            C +H + E++++AA +I  L+  D   +YV LSN  +AAG+W  V+ +R +MK +G+ +
Sbjct: 409 GCHIHSNAELSDLAAQKILALDPED-VSSYVMLSNAYSAAGRWQQVSTIRREMKEKGLKR 467

Query: 487 DTGCSWVGTESGL 499
             GCSW+   S +
Sbjct: 468 IPGCSWIEVRSKI 480



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 46/212 (21%), Positives = 89/212 (41%), Gaps = 36/212 (16%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           + G ++HA   K G+     +   +L  + K  + + A   F+++ +  + +Y  +I GY
Sbjct: 116 YLGKQLHARTMKMGLNTIVFVGSAMLDFYAKLCSFEEARNAFEDIQKPNVVSYTTLIHGY 175

Query: 122 LKNGQV-------------------------------EESLSLVRKLVSSGERPDGYTFS 150
           LK G++                               EE++SL  +++  G  P+  TF 
Sbjct: 176 LKKGKIDDALQLFQEMPERNVVSWNAMVGGFSQMGHNEEAVSLFIEMLREGFMPNQSTFP 235

Query: 151 MILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFD 210
             + ++    S       +G+  HA  +K    +D  +  +LV  Y K G    + +VF+
Sbjct: 236 CAITSAANMAS-----LGMGKSFHACAVKSLCTSDVFVCNSLVSFYAKCGSMEDSLLVFN 290

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            + ++N +   ++I GF   G  EDA   F +
Sbjct: 291 ELPDRNTVSWNAVICGFAQNGRGEDAVIFFER 322



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/110 (25%), Positives = 58/110 (52%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
           ++ P A+    N  +   G   HA   K+    +  +   L+  + KCG+++ +  +F+E
Sbjct: 232 STFPCAITSAANMASLGMGKSFHACAVKSLCTSDVFVCNSLVSFYAKCGSMEDSLLVFNE 291

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           LP R   ++N +I G+ +NG+ E+++    ++ ++G RP+  T   +L A
Sbjct: 292 LPDRNTVSWNAVICGFAQNGRGEDAVIFFERMRAAGLRPNSVTLLGLLCA 341


>gi|296082950|emb|CBI22251.3| unnamed protein product [Vitis vinifera]
          Length = 476

 Score =  254 bits (648), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 156/436 (35%), Positives = 230/436 (52%), Gaps = 36/436 (8%)

Query: 94  GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
           G L YA ++F ++ Q     YN +I GY K+    +S+ L  ++  +   PDG+TF+ +L
Sbjct: 43  GCLHYADRLFSQIHQPNTFFYNTLIRGYSKSSSPSQSVQLFNQMRRNCVDPDGFTFTFLL 102

Query: 154 KASTCCRSNVPL----------PRNLGRMVHA--------------------QILKCDVK 183
           K  +  R ++PL             LG   H                     Q+    V 
Sbjct: 103 KGRSRMRIDLPLIVASDEIHGAVLKLGFCFHLFVMNALIHLYAARGVPAAAHQVFNEMVG 162

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           AD V ++ LV ++V+ G+   AR VF  M E++V+  T M+SG+       +A E+FR+ 
Sbjct: 163 ADVVSWSGLVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREM 222

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               V  D V   ++I   + S+       EVH  + +N F   V L +AL+DMYAKCG 
Sbjct: 223 RDVGVRPDEVAMVSVISACT-SLGDLETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGC 281

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +D A +VF++M++K++ TW SMI     +GN   A  +F +M    ++P+ VTFL  L+A
Sbjct: 282 MDLAWQVFNNMERKSLITWNSMISACANHGNAEDAFRVFTLMLYSGIRPDGVTFLALLTA 341

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
             H G VD G  +FESM+RDY ++  +EHY CMVD+LGRAG LE+A K +  M    N  
Sbjct: 342 YTHKGWVDDGYGLFESMQRDYGVEAGVEHYGCMVDMLGRAGRLEEAYKLITSMSMPCNDV 401

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW ALL++CR++ DVEM      ++ +L   D  G Y+ L +   AAG+     ELR  M
Sbjct: 402 VWGALLAACRIYGDVEMGERVLKKLIELKP-DEGGYYILLRDIYVAAGRRAEAIELRRAM 460

Query: 480 KLRGVLKDTGCSWVGT 495
            + G  K  GCSWVG 
Sbjct: 461 DVNGAKKTLGCSWVGA 476



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 87/329 (26%), Positives = 143/329 (43%), Gaps = 49/329 (14%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           L++ H++ G L+ A Q+F E+P+R + ++  M++GY +  +  E+L L R++   G RPD
Sbjct: 171 LVVAHVRAGELELARQVFYEMPERDVVSWTVMVSGYAQAKRSREALELFREMRDVGVRPD 230

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
                 ++ A   C S   L    G  VH  I +        L  AL+D Y K G    A
Sbjct: 231 EVAMVSVISA---CTSLGDL--ETGFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLA 285

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETA 265
             VF+ M  K++I   SMIS   + G  EDA  +F       +++Y+ +           
Sbjct: 286 WQVFNNMERKSLITWNSMISACANHGNAEDAFRVF------TLMLYSGIRP--------- 330

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ-----QKNVFTWTS 320
                        V F       AL+  Y   G +DD   +F+ MQ     +  V  +  
Sbjct: 331 -----------DGVTF------LALLTAYTHKGWVDDGYGLFESMQRDYGVEAGVEHYGC 373

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
           M+D  G+ G   +A +L   M   C   N V +   L+AC   G V+ G  + + +    
Sbjct: 374 MVDMLGRAGRLEEAYKLITSMSMPC---NDVVWGALLAACRIYGDVEMGERVLKKL---I 427

Query: 381 SMKP-KMEHYACMVDLLGRAGSLEQALKF 408
            +KP +  +Y  + D+   AG   +A++ 
Sbjct: 428 ELKPDEGGYYILLRDIYVAAGRRAEAIEL 456



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/186 (24%), Positives = 88/186 (47%), Gaps = 11/186 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H +I + G     ++   L+ ++ KCG +  A Q+F+ + +++L  +N MI+    
Sbjct: 250 GFEVHRYIDENGFGWMVSLCNALIDMYAKCGCMDLAWQVFNNMERKSLITWNSMISACAN 309

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKAST---CCRSNVPLPRNLGRMVHAQILKC 180
           +G  E++  +   ++ SG RPDG TF  +L A T          L  ++ R         
Sbjct: 310 HGNAEDAFRVFTLMLYSGIRPDGVTFLALLTAYTHKGWVDDGYGLFESMQR-------DY 362

Query: 181 DVKADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
            V+A    Y  +VD   + G+   A +++  M +  N +   ++++     G VE  E +
Sbjct: 363 GVEAGVEHYGCMVDMLGRAGRLEEAYKLITSMSMPCNDVVWGALLAACRIYGDVEMGERV 422

Query: 240 FRKTVE 245
            +K +E
Sbjct: 423 LKKLIE 428


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  254 bits (648), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 148/441 (33%), Positives = 246/441 (55%), Gaps = 27/441 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+ IH++  K G++    +S KL+ L+ + G L+   ++FD +  R L ++N +I  Y  
Sbjct: 266 GVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYEL 325

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMI------LKASTCCRSNVPLPRNLGRMVHAQI 177
           N Q   ++SL +++  S  +PD  T   +      L     CRS        G  +    
Sbjct: 326 NEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLE--- 382

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
                  D  +  A+V  Y K G    AR VF+ +   +VI   ++ISG+   GF  +A 
Sbjct: 383 -------DITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFASEAI 435

Query: 238 EIFRKTVEKDIVVYNAMIEGYSISIETA-------RKALEVHCQLIKNVFFEDVKLGSAL 290
           E++    E+  +  N   +G  +S+  A       R+ +++H +L+KN  + DV + ++L
Sbjct: 436 EMYNIMEEEGEIAAN---QGTWVSVLPACSQAGALRQGMKLHGRLLKNGLYLDVFVVTSL 492

Query: 291 VDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY 350
            DMY KCG+++DA  +F  + + N   W ++I  +G +G+  +A+ LF  M +  V+P++
Sbjct: 493 ADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDH 552

Query: 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410
           +TF+  LSAC H+GLVD+G+  FE M+ DY + P ++HY CMVD+ GRAG LE ALKF+ 
Sbjct: 553 ITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGCMVDMYGRAGQLETALKFIK 612

Query: 411 EMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
            M  +P++ +W ALLS+CR+H +V++  IA+  +F++   +  G +V LSN  A+AGKW+
Sbjct: 613 SMSLQPDASIWGALLSACRVHGNVDLGKIASEHLFEVEP-EHVGYHVLLSNMYASAGKWE 671

Query: 471 SVTELREKMKLRGVLKDTGCS 491
            V E+R     +G+ K  G S
Sbjct: 672 GVDEIRSIAHGKGLRKTPGWS 692



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 124/465 (26%), Positives = 220/465 (47%), Gaps = 29/465 (6%)

Query: 39  LSNPLTA--TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGAL 96
           LS+ LT    + PS L+      T   G KIH    K G   +  ++  L+ L+ +  A+
Sbjct: 145 LSSGLTPDYRTFPSVLK---ACRTVIDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAV 201

Query: 97  KYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERP-DGYTFSMILKA 155
             A  +FDE+P R + ++N MI+GY ++G  +E+L+L     S+G R  D  T   +L A
Sbjct: 202 GNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTL-----SNGLRAMDSVTVVSLLSA 256

Query: 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
            T          N G  +H+  +K  ++++  +   L+D Y + G+    + VFD M  +
Sbjct: 257 CT-----EAGDFNRGVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQKVFDRMYVR 311

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEV 271
           ++I   S+I  +        A  +F++     ++ D +   ++    S  +   R    V
Sbjct: 312 DLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILS-QLGDIRACRSV 370

Query: 272 H-CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
               L K  F ED+ +G+A+V MYAK G +D AR VF+ +   +V +W ++I GY +NG 
Sbjct: 371 QGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGF 430

Query: 331 PNQALELFCMM-QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
            ++A+E++ +M +E  +  N  T++  L AC  AG + +G ++   + ++  +   +   
Sbjct: 431 ASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKN-GLYLDVFVV 489

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
             + D+ G+ G LE AL    ++P + NS  W  L++    H   E A +   E+     
Sbjct: 490 TSLADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEGV 548

Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMK----LRGVLKDTGC 490
                 +V L +  + +G  D      E M+    +   LK  GC
Sbjct: 549 KPDHITFVTLLSACSHSGLVDEGQWCFEMMQTDYGITPSLKHYGC 593



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 113/430 (26%), Positives = 198/430 (46%), Gaps = 28/430 (6%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +HA +  +    N  IS KL+ L+   G +  A   FD +  R + A+N MI+GY + G 
Sbjct: 73  LHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGRAGN 132

Query: 127 VEESLSLVRK-LVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             E +      ++SSG  PD  TF  +LKA   CR+ +      G  +H   LK     D
Sbjct: 133 SSEVIRCFSLFMLSSGLTPDYRTFPSVLKA---CRTVID-----GNKIHCLALKFGFMWD 184

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
             +  +L+  Y +      ARI+FD M  +++    +MISG+   G  ++A  +      
Sbjct: 185 VYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGLRA 244

Query: 246 KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARR 305
            D V   +++   + + +  R  + +H   IK+    ++ + + L+D+YA+ G++ D ++
Sbjct: 245 MDSVTVVSLLSACTEAGDFNR-GVTIHSYSIKHGLESELFVSNKLIDLYAEFGRLRDCQK 303

Query: 306 VFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365
           VFD M  +++ +W S+I  Y  N  P +A+ LF  M+   +QP+ +T +   S     G 
Sbjct: 304 VFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGD 363

Query: 366 VDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV--WAA 423
           +   R +     R       +     +V +  + G ++ A      +   PN+DV  W  
Sbjct: 364 IRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWL---PNTDVISWNT 420

Query: 424 LLSSCRLH----DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           ++S    +    + +EM NI   E  ++ AN   G +V++    + AG       LR+ M
Sbjct: 421 IISGYAQNGFASEAIEMYNIMEEE-GEIAANQ--GTWVSVLPACSQAGA------LRQGM 471

Query: 480 KLRGVLKDTG 489
           KL G L   G
Sbjct: 472 KLHGRLLKNG 481



 Score = 76.3 bits (186), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/250 (24%), Positives = 116/250 (46%), Gaps = 28/250 (11%)

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
            + +HA+++      +  +   LV+ Y   G  + AR  FD +  ++V     MISG+  
Sbjct: 70  AKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFDHIQNRDVYAWNLMISGYGR 129

Query: 230 QGFVEDAEEIFR--------KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFF 281
            G   ++ E+ R          +  D   + ++++     I+  +    +HC  +K  F 
Sbjct: 130 AG---NSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTVIDGNK----IHCLALKFGFM 182

Query: 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM 341
            DV + ++L+ +Y++   + +AR +FD M  +++ +W +MI GY ++GN  +AL L   +
Sbjct: 183 WDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGL 242

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC----MVDLLG 397
           +      + VT +  LSAC  AG  ++G  I       YS+K  +E        ++DL  
Sbjct: 243 RAM----DSVTVVSLLSACTEAGDFNRGVTI-----HSYSIKHGLESELFVSNKLIDLYA 293

Query: 398 RAGSLEQALK 407
             G L    K
Sbjct: 294 EFGRLRDCQK 303


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  254 bits (648), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 141/435 (32%), Positives = 239/435 (54%), Gaps = 13/435 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH  I K  ++ +  I   LL ++ K G   YA  +F  + +R + A+  +I+G+ +
Sbjct: 361 GRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQ 420

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N + +E+L   R + +   +PD    + I+ A T          +LG  +H  ++K  ++
Sbjct: 421 NRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEK-----VDLGCTIHGFVIKSGLQ 475

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  + ++L+D Y K G    A  +F  M  KN++   S+IS +      + +  +F + 
Sbjct: 476 LDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQV 535

Query: 244 VEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           +  D+    V + +++   S S+    K   VH  L++     D+++ + L+DMY KCG 
Sbjct: 536 LRNDLYPDSVSFTSVLAAIS-SVAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGL 594

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +  A+ +F+ + +KN+  W SMI GYG +G  ++A+ELF  M+   ++P+ VTFL  LS+
Sbjct: 595 LKYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSS 654

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H+GL+++G  +FE M+  + ++P+MEHY  +VDL GRAG L  A  FV  MP +P+  
Sbjct: 655 CNHSGLIEEGLHLFEMMKMKFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEPDRS 714

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA-YVALSNTLAAAGKWDSVTELREK 478
           +W +LL SC++H ++E+  + AN++  LN     G+ YV L N    A  WD    LR  
Sbjct: 715 IWLSLLCSCKIHLNLELGEMVANKL--LNMEPSKGSNYVQLLNLYGEAELWDRTANLRAS 772

Query: 479 MKLRGVLKDTGCSWV 493
           MK +G+ K  GCSW+
Sbjct: 773 MKEKGLKKTPGCSWI 787



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 108/455 (23%), Positives = 224/455 (49%), Gaps = 17/455 (3%)

Query: 32  KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHL 91
           K +N   +S+  T T        +++     +G ++H    K G + +  +   LL ++ 
Sbjct: 233 KTENVKVVSSSFTCTLSACGQGEFVS-----FGKQVHCDAIKVGFEDDPYVHTSLLTMYG 287

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           KC  ++ A ++F+E+P + +  +N +I+ Y+ NG   ++L + +++       D +T   
Sbjct: 288 KCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILN 347

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           +L +S+     +    +LGR++H +I+K  +++   + +AL+  Y K G ++YA  +F  
Sbjct: 348 VLTSSS-----MAGLYDLGRLIHTEIVKRPLQSSITIQSALLTMYSKFGDSNYANSIFST 402

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV 271
           M E++V+   S+ISGF      ++A + FR  +E D+V  ++ I    IS  T  + +++
Sbjct: 403 MKERDVVAWGSVISGFCQNRKYKEALDFFR-AMEADLVKPDSDIMASIISACTGLEKVDL 461

Query: 272 HCQL----IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
            C +    IK+    DV + S+L+DMY+K G  + A  +F  M  KN+  W S+I  Y +
Sbjct: 462 GCTIHGFVIKSGLQLDVFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCR 521

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           N  P+ ++ LF  +    + P+ V+F   L+A      + KG+ +   + R + +   ++
Sbjct: 522 NNLPDLSINLFSQVLRNDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRLW-IPFDLQ 580

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
               ++D+  + G L+ A + + E   + N   W +++     H +   A    +E+   
Sbjct: 581 VENTLIDMYIKCGLLKYA-QHIFERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSS 639

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
                   +++L ++   +G  +    L E MK++
Sbjct: 640 GIKPDDVTFLSLLSSCNHSGLIEEGLHLFEMMKMK 674



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 112/445 (25%), Positives = 200/445 (44%), Gaps = 85/445 (19%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           T  + PS L+   +     YG  IH+ I  TG+  +  I+  L+ +++KCG    A ++F
Sbjct: 52  TRFTYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYITSSLINIYVKCGTFTDAVKVF 111

Query: 104 DELPQRTLSA-----YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
           D+LP+  +S      +N +I GY + GQ+EE +    ++ SSG +               
Sbjct: 112 DQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQSSGYKE-------------- 157

Query: 159 CRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK-NV 217
                      G+ +H+ I++  +  D  L TAL+D+Y K G+ + AR +F  + ++ N+
Sbjct: 158 -----------GKQIHSYIVRNMLNFDPFLETALIDTYFKCGRPTEARYLFKKLKDRSNI 206

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISI------ETARKALEV 271
           +    MI GF   G  E++ E +     +++ V ++    ++ ++      E      +V
Sbjct: 207 VAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSS---SFTCTLSACGQGEFVSFGKQV 263

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
           HC  IK  F +D  + ++L+ MY KC  I+ A +VF+ +  K +  W ++I  Y  NG  
Sbjct: 264 HCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEIELWNALISAYVGNGYA 323

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR--------------------- 370
             AL ++  M+ C V  +  T L  L++   AGL D GR                     
Sbjct: 324 YDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTEIVKRPLQSSITIQSAL 383

Query: 371 --------------EIFESM-ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE- 414
                          IF +M ERD      +  +  ++    +    ++AL F   M   
Sbjct: 384 LTMYSKFGDSNYANSIFSTMKERD------VVAWGSVISGFCQNRKYKEALDFFRAMEAD 437

Query: 415 --KPNSDVWAALLSSCRLHDDVEMA 437
             KP+SD+ A+++S+C   + V++ 
Sbjct: 438 LVKPDSDIMASIISACTGLEKVDLG 462


>gi|15226463|ref|NP_179705.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206523|sp|Q9SKQ4.1|PP167_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g21090
 gi|4803934|gb|AAD29807.1| unknown protein [Arabidopsis thaliana]
 gi|330252028|gb|AEC07122.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 597

 Score =  254 bits (648), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 164/517 (31%), Positives = 264/517 (51%), Gaps = 75/517 (14%)

Query: 48  LPSALQHYINSDTPFYGLKIHAHITKTGVK-PNTNISIKLLILHLKCG----ALKYAGQM 102
           L S LQ   ++ +   G  IH H+  TG K PNT +S  L+ +++KCG    A K   QM
Sbjct: 49  LASLLQQCGDTKSLKQGKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQM 108

Query: 103 ---------------------------FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVR 135
                                      FD +P+R + ++N M+ GY ++G + E+L   +
Sbjct: 109 HLRNLYSWNNMVSGYVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYK 168

Query: 136 KLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDS 195
           +   SG + + ++F+ +L A  C +S       L R  H Q+L     ++ VL  +++D+
Sbjct: 169 EFRRSGIKFNEFSFAGLLTA--CVKSR---QLQLNRQAHGQVLVAGFLSNVVLSCSIIDA 223

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMI 255
           Y K G+   A+  FD M  K++   T++ISG+   G +E AE++F +  EK+ V + A+I
Sbjct: 224 YAKCGQMESAKRCFDEMTVKDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALI 283

Query: 256 EGY----------------------------------SISIETARKALEVHCQLIKNVFF 281
            GY                                  S SI + R   E+H  +I+    
Sbjct: 284 AGYVRQGSGNRALDLFRKMIALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRTNVR 343

Query: 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKN--VFTWTSMIDGYGKNGNPNQALELFC 339
            +  + S+L+DMY+K G ++ + RVF     K+  VF W +MI    ++G  ++AL +  
Sbjct: 344 PNAIVISSLIDMYSKSGSLEASERVFRICDDKHDCVF-WNTMISALAQHGLGHKALRMLD 402

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
            M +  VQPN  T +  L+AC H+GLV++G   FESM   + + P  EHYAC++DLLGRA
Sbjct: 403 DMIKFRVQPNRTTLVVILNACSHSGLVEEGLRWFESMTVQHGIVPDQEHYACLIDLLGRA 462

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVAL 459
           G  ++ ++ + EMP +P+  +W A+L  CR+H + E+   AA+E+ KL+  +    Y+ L
Sbjct: 463 GCFKELMRKIEEMPFEPDKHIWNAILGVCRIHGNEELGKKAADELIKLDP-ESSAPYILL 521

Query: 460 SNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
           S+  A  GKW+ V +LR  MK R V K+   SW+  E
Sbjct: 522 SSIYADHGKWELVEKLRGVMKKRRVNKEKAVSWIEIE 558



 Score =  108 bits (271), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 100/447 (22%), Positives = 182/447 (40%), Gaps = 73/447 (16%)

Query: 108 QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR 167
           +R +      ++ +    ++ +++S +  L   G R     F ++      C     L +
Sbjct: 8   KRPICVAQSFLSKHATKAELSQAVSRLESLTQQGIR---LPFDLLASLLQQCGDTKSLKQ 64

Query: 168 NLGRMVHAQILKCDVKADDVLYT-ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
             G+ +H  +     K  + L +  L+  Y+K GK   A  VFD M  +N+    +M+SG
Sbjct: 65  --GKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSG 122

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS----------ISIETARKAL------- 269
           ++  G +  A  +F    E+D+V +N M+ GY+             E  R  +       
Sbjct: 123 YVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFYKEFRRSGIKFNEFSF 182

Query: 270 -----------------EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ 312
                            + H Q++   F  +V L  +++D YAKCG+++ A+R FD M  
Sbjct: 183 AGLLTACVKSRQLQLNRQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTV 242

Query: 313 KNVFTWTSMIDGYGKNG---------------NP----------------NQALELFCMM 341
           K++  WT++I GY K G               NP                N+AL+LF  M
Sbjct: 243 KDIHIWTTLISGYAKLGDMEAAEKLFCEMPEKNPVSWTALIAGYVRQGSGNRALDLFRKM 302

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGS 401
               V+P   TF   L A      +  G+EI   M R  +++P     + ++D+  ++GS
Sbjct: 303 IALGVKPEQFTFSSCLCASASIASLRHGKEIHGYMIRT-NVRPNAIVISSLIDMYSKSGS 361

Query: 402 LEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSN 461
           LE + +      +K +   W  ++S+   H     A    +++ K          V + N
Sbjct: 362 LEASERVFRICDDKHDCVFWNTMISALAQHGLGHKALRMLDDMIKFRVQPNRTTLVVILN 421

Query: 462 TLAAAGKWDSVTELREKMKLR-GVLKD 487
             + +G  +      E M ++ G++ D
Sbjct: 422 ACSHSGLVEEGLRWFESMTVQHGIVPD 448


>gi|224107543|ref|XP_002314516.1| predicted protein [Populus trichocarpa]
 gi|222863556|gb|EEF00687.1| predicted protein [Populus trichocarpa]
          Length = 632

 Score =  254 bits (648), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 148/443 (33%), Positives = 250/443 (56%), Gaps = 19/443 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH    KTG   +  ++  L+ ++ KCG      ++FDE+P+R + ++N +++GY  
Sbjct: 147 GKLIHGKSLKTGFVLDVIVANSLMSMYSKCGGFGECLKLFDEMPERNVGSWNVILSGYAD 206

Query: 124 NGQV---EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
           +G     +E    V+ +   G +PD +T S +L   T C  ++   R+ GR +H  I++ 
Sbjct: 207 SGDRNFDKEVSGFVKDMQIEGLKPDAFTVSSLL---TLCNGHMG-KRDHGRELHGFIVRI 262

Query: 181 DVKADDV----LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
           ++         L   L+D Y +  +    R VFD M  +NV   T+MI+G +  G +E+ 
Sbjct: 263 ELAVGSGTEVHLGCCLIDMYSRSNRVDVGRRVFDRMECRNVYAWTAMINGHVQNGALEEG 322

Query: 237 EEIF-----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALV 291
             +F     R  VE + V   +++   S ++       ++H   I+  F  DV L +AL+
Sbjct: 323 LVLFHEMQVRDGVEPNKVSLVSVLPACS-AVAGLTGVKQIHGYAIRKQFNNDVSLCNALI 381

Query: 292 DMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY 350
           DMY+KCG +D A++VF+    +++  +W+SMI GYG +G   +A+ ++  M +   +P+ 
Sbjct: 382 DMYSKCGSLDHAKQVFEFGSFRRDPISWSSMISGYGLHGKGEEAVFVYNKMLQLGNKPDM 441

Query: 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410
           +T +G LSAC  AGLVD+G  I++S    Y +KP +E  AC+VD+LGR+G L QAL ++ 
Sbjct: 442 ITIVGVLSACSRAGLVDEGLCIYKSAINKYRIKPTVEICACVVDMLGRSGQLGQALDYIK 501

Query: 411 EMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
            MP +P+  VW A++S+  +H + EM ++A   + +L   + P  YV+LSN  A++ +WD
Sbjct: 502 TMPMEPSPSVWGAVVSASIIHGNSEMQDLAYRFLVQLEP-ENPSNYVSLSNLHASSRRWD 560

Query: 471 SVTELREKMKLRGVLKDTGCSWV 493
            V+E+R  MK R + K  GCSW+
Sbjct: 561 VVSEVRTMMKDRCLTKTPGCSWI 583



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 107/403 (26%), Positives = 187/403 (46%), Gaps = 36/403 (8%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           + HA I   G   N  ++ KL+  +   G    +  +FD L  +++  +N +I G++KN 
Sbjct: 48  QCHARILSLGFTQNPFLATKLISAYAIFGVPALSRLVFDSLHFKSVYLWNSLINGFVKNR 107

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              E+     ++   G   D YT + + K    C     L  N G+++H + LK     D
Sbjct: 108 AYNEAFGWFYQMCCRGVLLDDYTLATMSKV---CHEIGDL--NAGKLIHGKSLKTGFVLD 162

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS----------QGFVED 235
            ++  +L+  Y K G       +FD M E+NV     ++SG+             GFV+D
Sbjct: 163 VIVANSLMSMYSKCGGFGECLKLFDEMPERNVGSWNVILSGYADSGDRNFDKEVSGFVKD 222

Query: 236 AEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFF----EDVKLGSALV 291
            +    + ++ D    ++++   +  +       E+H  +++         +V LG  L+
Sbjct: 223 MQ---IEGLKPDAFTVSSLLTLCNGHMGKRDHGRELHGFIVRIELAVGSGTEVHLGCCLI 279

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ-ECCVQPNY 350
           DMY++  ++D  RRVFD M+ +NV+ WT+MI+G+ +NG   + L LF  MQ    V+PN 
Sbjct: 280 DMYSRSNRVDVGRRVFDRMECRNVYAWTAMINGHVQNGALEEGLVLFHEMQVRDGVEPNK 339

Query: 351 VTFLGALSACGH-AGLVD----KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
           V+ +  L AC   AGL       G  I +    D S+         ++D+  + GSL+ A
Sbjct: 340 VSLVSVLPACSAVAGLTGVKQIHGYAIRKQFNNDVSL------CNALIDMYSKCGSLDHA 393

Query: 406 LKFVLEMPE-KPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
            K V E    + +   W++++S   LH   E A    N++ +L
Sbjct: 394 -KQVFEFGSFRRDPISWSSMISGYGLHGKGEEAVFVYNKMLQL 435



 Score = 91.7 bits (226), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 130/268 (48%), Gaps = 11/268 (4%)

Query: 169 LGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM 228
           L +  HA+IL      +  L T L+ +Y   G  + +R+VFD +  K+V    S+I+GF+
Sbjct: 45  LTQQCHARILSLGFTQNPFLATKLISAYAIFGVPALSRLVFDSLHFKSVYLWNSLINGFV 104

Query: 229 SQGFVEDAEEIFRKTVEKDIVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
                 +A   F +   + +++ +   A +      I        +H + +K  F  DV 
Sbjct: 105 KNRAYNEAFGWFYQMCCRGVLLDDYTLATMSKVCHEIGDLNAGKLIHGKSLKTGFVLDVI 164

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM---MQ 342
           + ++L+ MY+KCG   +  ++FD M ++NV +W  ++ GY  +G+ N   E+      MQ
Sbjct: 165 VANSLMSMYSKCGGFGECLKLFDEMPERNVGSWNVILSGYADSGDRNFDKEVSGFVKDMQ 224

Query: 343 ECCVQPNYVTFLGALSAC-GHAGLVDKGREIFESMER-DYSMKPKMEHY--ACMVDLLGR 398
              ++P+  T    L+ C GH G  D GRE+   + R + ++    E +   C++D+  R
Sbjct: 225 IEGLKPDAFTVSSLLTLCNGHMGKRDHGRELHGFIVRIELAVGSGTEVHLGCCLIDMYSR 284

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALLS 426
           +  ++   + V +  E  N   W A+++
Sbjct: 285 SNRVDVGRR-VFDRMECRNVYAWTAMIN 311


>gi|357502521|ref|XP_003621549.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87241485|gb|ABD33343.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355496564|gb|AES77767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 654

 Score =  254 bits (648), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 141/436 (32%), Positives = 248/436 (56%), Gaps = 9/436 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+ +H  +  +G+  +  ++ KL+ ++   G++ +A ++FDE  ++T+  +N +      
Sbjct: 93  GVDVHHRLVGSGLDQDPYLATKLINMYCDLGSVDHACKVFDETREKTIFVWNAIFRALAM 152

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL-PRNLGRMVHAQILKCDV 182
             + E+ L L  ++   G   + +T++ +LKA  C  S + + P   G+ +HA IL+   
Sbjct: 153 ASRGEDLLVLYGQMNWIGIPSNRFTYTYVLKA--CVVSELSICPLRKGKEIHAHILRHGY 210

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR- 241
           +    + T L+D Y + G  SYA  VF  M +KN++  ++MI+ +        A E+F+ 
Sbjct: 211 EGHVHVMTTLLDVYARFGYVSYASSVFGAMPDKNIVSWSAMIACYAKNEMPMKALELFQI 270

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFEDVKLGSALVDMYAKC 297
             +E    V N +     +    +  ALE    VH  +++      + + + L+ MY +C
Sbjct: 271 MMLEACDTVPNPITMVSVLQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITMYGRC 330

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G+I   +RVFD+M++++V +W S+I  YG +G   +A+++F  M    V P+Y+TF+  L
Sbjct: 331 GEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITVL 390

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            AC HAGLV++ + +FESM   Y + P+MEHYACMVD+LGRA  L++A++ +  M  KP 
Sbjct: 391 CACSHAGLVEEAKILFESMLNKYRIHPRMEHYACMVDILGRANRLDEAIELIQNMDFKPG 450

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
             VW +LL SCR+H +VE+A  A+  +F+L   +  G YV LS+  A +  W+ V  +R+
Sbjct: 451 PTVWGSLLGSCRIHCNVELAERASAMLFELEPKN-AGNYVLLSHIYAKSRMWNDVRRVRK 509

Query: 478 KMKLRGVLKDTGCSWV 493
           +++ RG+ K   CSW+
Sbjct: 510 QLESRGLQKIPSCSWI 525



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/125 (22%), Positives = 66/125 (52%), Gaps = 3/125 (2%)

Query: 33  LQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLK 92
           L+  D++ NP+T  S+   LQ   +     +G  +HA++ + G+     +   L+ ++ +
Sbjct: 273 LEACDTVPNPITMVSV---LQACASLAALEHGKLVHAYVLRRGLDSTLPVLNTLITMYGR 329

Query: 93  CGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
           CG +    ++FD + +R + ++N +I+ Y  +G  ++++ +   +++ G  P   TF  +
Sbjct: 330 CGEISTGQRVFDYMKKRDVISWNSLISIYGMHGLGKKAIQIFENMINRGVSPSYITFITV 389

Query: 153 LKAST 157
           L A +
Sbjct: 390 LCACS 394


>gi|449520543|ref|XP_004167293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g68930-like [Cucumis
           sativus]
          Length = 695

 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 147/435 (33%), Positives = 225/435 (51%), Gaps = 46/435 (10%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           YG +IH  I       N  I   L  ++ KCG ++ A  +FD L ++ L ++N MI+GY 
Sbjct: 173 YGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYA 232

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           KNGQ E+ + L+ ++  SG  PD  T S I+ A                           
Sbjct: 233 KNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAA--------------------------- 265

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EE 238
                        Y + G+   AR VF    EK+++C T+M+ G+   G  EDA     E
Sbjct: 266 -------------YCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNE 312

Query: 239 IFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
           +  + +E D    ++++   +  + +      VH + I      ++ + SAL+DMY+KCG
Sbjct: 313 MLLEHIEPDSYTLSSVVSSCA-KLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCG 371

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            IDDAR VF+ M  +NV +W +MI G  +NG+   ALELF  M +   +P+ VTF+G LS
Sbjct: 372 FIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILS 431

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC H   +++G+E F+S+   + M P ++HYACMV+LLGR G +EQA+  +  M   P+ 
Sbjct: 432 ACLHCNWIEQGQEYFDSISNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDF 491

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            +W+ LLS C    D+  A +AA  +F+L+       Y+ LSN  A+ G+W  V  +R  
Sbjct: 492 LIWSTLLSICSTKGDIVNAEVAARHLFELDPT-IAVPYIMLSNMYASMGRWKDVASVRNL 550

Query: 479 MKLRGVLKDTGCSWV 493
           MK + V K  G SW+
Sbjct: 551 MKSKNVKKFAGFSWI 565



 Score =  112 bits (281), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 131/282 (46%), Gaps = 44/282 (15%)

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
           D  L+  L+  Y K GK   A+ +FD ML+++     +++S +   G +++ +  F +  
Sbjct: 57  DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDXFSWNALLSAYAKSGSIQNLKATFDRMP 116

Query: 245 EKDIVVYNAMIEGYS---------------------------ISIETA-------RKALE 270
            +D V YN  I G+S                           +SI  A       R   +
Sbjct: 117 FRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLLDLRYGKQ 176

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           +H  +I   F  +V + +AL DMYAKCG+I+ AR +FD + +KN+ +W  MI GY KNG 
Sbjct: 177 IHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQ 236

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF-ESMERDYSMKPKMEHY 389
           P + + L   M+     P+ VT    ++A    G VD+ R +F E  E+D         +
Sbjct: 237 PEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVC------W 290

Query: 390 ACMVDLLGRAGSLEQALKFVLEM---PEKPNSDVWAALLSSC 428
             M+    + G  E AL    EM     +P+S   ++++SSC
Sbjct: 291 TAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSC 332


>gi|449435966|ref|XP_004135765.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Cucumis sativus]
          Length = 666

 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 153/497 (30%), Positives = 253/497 (50%), Gaps = 73/497 (14%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGA------LKYAGQMFDELPQRTLSAYNY 116
           Y  ++H  + ++G   +  +S  LL    KC A        +A ++F  +P   +  +N 
Sbjct: 48  YLTQLHGLVLRSGHFQDHYVSGALL----KCYANPHFSNFDFALKVFSSIPNPNVFIWNI 103

Query: 117 MIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS--------------- 161
           +I G L+N ++ +++    ++V    RP+ +T+  + KA +  ++               
Sbjct: 104 VIKGCLENNKLFKAIYFYGRMVIDA-RPNKFTYPTLFKACSVAQAVQEGRQIHGHVVKHG 162

Query: 162 ----------NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
                      + +  + GR+  A+ +    ++D V +  ++D Y+K G    A+ +F  
Sbjct: 163 IGSDVHIKSAGIHMYASFGRLEDARKMFYSGESDVVCWNTMIDGYLKCGVLEAAKGLFAQ 222

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE- 270
           M  KN+     MI+G    G + DA ++F +  E+D + +++M++GY IS    ++ALE 
Sbjct: 223 MPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSERDEISWSSMVDGY-ISAGRYKEALEI 281

Query: 271 ----------------------------------VHCQLIKNVFFEDVKLGSALVDMYAK 296
                                             VH  L +N    D  LG+AL+DMYAK
Sbjct: 282 FQQMQREETRPGRFILSSVLAACSNIGAIDQGRWVHAYLKRNSIKLDAVLGTALLDMYAK 341

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG++D    VF+ M+++ +FTW +MI G   +G    ALELF  +QE  ++PN +T +G 
Sbjct: 342 CGRLDMGWEVFEEMKEREIFTWNAMIGGLAIHGRAEDALELFSKLQEGRMKPNGITLVGV 401

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           L+AC HAG VDKG  IF++M   Y + P++EHY CMVDLLGR+G   +A   +  MP KP
Sbjct: 402 LTACAHAGFVDKGLRIFQTMREFYGVDPELEHYGCMVDLLGRSGLFSEAEDLINSMPMKP 461

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
           N+ VW ALL +CR+H + ++A      + +L   +  G YV LSN  A  G++D V+++R
Sbjct: 462 NAAVWGALLGACRIHGNFDLAERVGKILLELEPQN-SGRYVLLSNIYAKVGRFDDVSKIR 520

Query: 477 EKMKLRGVLKDTGCSWV 493
           + MK RG+    G S V
Sbjct: 521 KLMKDRGIKTVPGVSIV 537



 Score = 47.4 bits (111), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 55/228 (24%), Positives = 95/228 (41%), Gaps = 14/228 (6%)

Query: 259 SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK--CGKIDDARRVFDHMQQKNVF 316
           S SI + +   ++H  ++++  F+D  +  AL+  YA       D A +VF  +   NVF
Sbjct: 40  SKSITSLQYLTQLHGLVLRSGHFQDHYVSGALLKCYANPHFSNFDFALKVFSSIPNPNVF 99

Query: 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM 376
            W  +I G  +N    +A+  +  M     +PN  T+     AC  A  V +GR+I   +
Sbjct: 100 IWNIVIKGCLENNKLFKAIYFYGRMV-IDARPNKFTYPTLFKACSVAQAVQEGRQIHGHV 158

Query: 377 ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV--WAALLSSCRLHDDV 434
            + + +   +   +  + +    G LE A K    M     SDV  W  ++        +
Sbjct: 159 VK-HGIGSDVHIKSAGIHMYASFGRLEDARK----MFYSGESDVVCWNTMIDGYLKCGVL 213

Query: 435 EMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
           E    AA  +F        G++  + N LA  G      +L ++M  R
Sbjct: 214 E----AAKGLFAQMPVKNIGSWNVMINGLAKGGNLGDARKLFDEMSER 257


>gi|15241714|ref|NP_198751.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171567|sp|Q9FLZ9.1|PP405_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39350
 gi|10177683|dbj|BAB11009.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007040|gb|AED94423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 677

 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 141/442 (31%), Positives = 244/442 (55%), Gaps = 15/442 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H  + +  +     +   L+ ++LKCG +  A  +FD + +R +  +  MI GY +
Sbjct: 237 GRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTE 296

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G VE +L L R +   G RP+  T + ++  S C  +   L  N G+ +H   ++  V 
Sbjct: 297 DGDVENALELCRLMQFEGVRPNAVTIASLV--SVCGDA---LKVNDGKCLHGWAVRQQVY 351

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
           +D ++ T+L+  Y K  +      VF    + +    +++I+G +    V DA  +F   
Sbjct: 352 SDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRM 411

Query: 241 -RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            R+ VE +I   N+++  Y+ ++   R+A+ +HC L K  F   +   + LV +Y+KCG 
Sbjct: 412 RREDVEPNIATLNSLLPAYA-ALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGT 470

Query: 300 IDDARRVFDHMQQK----NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           ++ A ++F+ +Q+K    +V  W ++I GYG +G+ + AL++F  M    V PN +TF  
Sbjct: 471 LESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTS 530

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
           AL+AC H+GLV++G  +F  M   Y    +  HY C+VDLLGRAG L++A   +  +P +
Sbjct: 531 ALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFE 590

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
           P S VW ALL++C  H++V++  +AAN++F+L   +  G YV L+N  AA G+W  + ++
Sbjct: 591 PTSTVWGALLAACVTHENVQLGEMAANKLFELEP-ENTGNYVLLANIYAALGRWKDMEKV 649

Query: 476 REKMKLRGVLKDTGCSWVGTES 497
           R  M+  G+ K  G S +   S
Sbjct: 650 RSMMENVGLRKKPGHSTIEIRS 671



 Score =  189 bits (480), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 132/448 (29%), Positives = 235/448 (52%), Gaps = 25/448 (5%)

Query: 50  SALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQR 109
           S L H+  + +      +H H+  TG + + +I   L + +  CG + YA ++F+E+PQ 
Sbjct: 20  SLLNHFAATQSISKTKALHCHVI-TGGRVSGHILSTLSVTYALCGHITYARKLFEEMPQS 78

Query: 110 TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGER--PDGYTFSMILKASTCCRSNVPLPR 167
           +L +YN +I  Y++ G   +++S+  ++VS G +  PDGYT+  + KA+   +S      
Sbjct: 79  SLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGELKS-----M 133

Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
            LG +VH +IL+     D  +  AL+  Y+  GK   AR VFD+M  ++VI   +MISG+
Sbjct: 134 KLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGY 193

Query: 228 MSQGFVEDAEEIFRKTVEKDIVVYNAMIE------GYSISIETARKALEVHCQLIKNVFF 281
              G++ DA  +F   V + + + +A I       G+   +E  R    VH  + +    
Sbjct: 194 YRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRN---VHKLVEEKRLG 250

Query: 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM 341
           + +++ +ALV+MY KCG++D+AR VFD M++++V TWT MI+GY ++G+   ALEL  +M
Sbjct: 251 DKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLM 310

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGS 401
           Q   V+PN VT    +S CG A  V+ G+ +     R   +   +     ++ +  +   
Sbjct: 311 QFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQ-QVYSDIIIETSLISMYAKCKR 369

Query: 402 LEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSN 461
           ++   + V     K ++  W+A+++ C  ++ V      A  +FK    +     +A  N
Sbjct: 370 VDLCFR-VFSGASKYHTGPWSAIIAGCVQNELVS----DALGLFKRMRREDVEPNIATLN 424

Query: 462 TLAAAGKWDSVTELREKMKLRGVLKDTG 489
           +L  A  + ++ +LR+ M +   L  TG
Sbjct: 425 SLLPA--YAALADLRQAMNIHCYLTKTG 450


>gi|449459160|ref|XP_004147314.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 695

 Score =  254 bits (648), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 147/435 (33%), Positives = 225/435 (51%), Gaps = 46/435 (10%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           YG +IH  I       N  I   L  ++ KCG ++ A  +FD L ++ L ++N MI+GY 
Sbjct: 173 YGKQIHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYA 232

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           KNGQ E+ + L+ ++  SG  PD  T S I+ A                           
Sbjct: 233 KNGQPEKCIGLLHQMRLSGHMPDQVTMSTIIAA--------------------------- 265

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EE 238
                        Y + G+   AR VF    EK+++C T+M+ G+   G  EDA     E
Sbjct: 266 -------------YCQCGRVDEARRVFSEFKEKDIVCWTAMMVGYAKNGREEDALLLFNE 312

Query: 239 IFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
           +  + +E D    ++++   +  + +      VH + I      ++ + SAL+DMY+KCG
Sbjct: 313 MLLEHIEPDSYTLSSVVSSCA-KLASLHHGQAVHGKSILAGLNNNLLVSSALIDMYSKCG 371

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            IDDAR VF+ M  +NV +W +MI G  +NG+   ALELF  M +   +P+ VTF+G LS
Sbjct: 372 FIDDARSVFNLMPTRNVVSWNAMIVGCAQNGHDKDALELFENMLQQKFKPDNVTFIGILS 431

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC H   +++G+E F+S+   + M P ++HYACMV+LLGR G +EQA+  +  M   P+ 
Sbjct: 432 ACLHCNWIEQGQEYFDSITNQHGMTPTLDHYACMVNLLGRTGRIEQAVALIKNMAHDPDF 491

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            +W+ LLS C    D+  A +AA  +F+L+       Y+ LSN  A+ G+W  V  +R  
Sbjct: 492 LIWSTLLSICSTKGDIVNAEVAARHLFELDPT-IAVPYIMLSNMYASMGRWKDVASVRNL 550

Query: 479 MKLRGVLKDTGCSWV 493
           MK + V K  G SW+
Sbjct: 551 MKSKNVKKFAGFSWI 565



 Score =  114 bits (285), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 81/282 (28%), Positives = 132/282 (46%), Gaps = 44/282 (15%)

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
           D  L+  L+  Y K GK   A+ +FD ML++++    +++S +   G +++ +  F +  
Sbjct: 57  DSFLHNQLLHLYAKFGKLRDAQNLFDKMLKRDIFSWNALLSAYAKSGSIQNLKATFDRMP 116

Query: 245 EKDIVVYNAMIEGYS---------------------------ISIETA-------RKALE 270
            +D V YN  I G+S                           +SI  A       R   +
Sbjct: 117 FRDSVSYNTTIAGFSGNSCPQESLELFKRMQREGFEPTEYTIVSILNASAQLSDLRYGKQ 176

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           +H  +I   F  +V + +AL DMYAKCG+I+ AR +FD + +KN+ +W  MI GY KNG 
Sbjct: 177 IHGSIIVRNFLGNVFIWNALTDMYAKCGEIEQARWLFDCLTKKNLVSWNLMISGYAKNGQ 236

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF-ESMERDYSMKPKMEHY 389
           P + + L   M+     P+ VT    ++A    G VD+ R +F E  E+D         +
Sbjct: 237 PEKCIGLLHQMRLSGHMPDQVTMSTIIAAYCQCGRVDEARRVFSEFKEKDIVC------W 290

Query: 390 ACMVDLLGRAGSLEQALKFVLEM---PEKPNSDVWAALLSSC 428
             M+    + G  E AL    EM     +P+S   ++++SSC
Sbjct: 291 TAMMVGYAKNGREEDALLLFNEMLLEHIEPDSYTLSSVVSSC 332


>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1028

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 148/453 (32%), Positives = 253/453 (55%), Gaps = 15/453 (3%)

Query: 48  LPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP 107
           L S L+   N    + G ++H    K G+    +    L+ ++ KCG ++ A ++F  +P
Sbjct: 532 LASTLKACTNVHGLYQGKQVHCLSVKCGLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMP 591

Query: 108 QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR 167
           + ++ + N +IAGY +N  +EE++ L +++++ G  P   TF+ I++A   C    P   
Sbjct: 592 EWSVVSMNALIAGYSQN-NLEEAVVLFQEMLTKGVNPSEITFATIVEA---CHK--PESL 645

Query: 168 NLGRMVHAQILKCDVKAD-DVLYTALVDSYVKGGKTSYARIVF-DMMLEKNVICSTSMIS 225
            LG   H QI+K    ++ + L  +L+  Y+   + + A  +F ++   K+++  T M+S
Sbjct: 646 TLGTQFHGQIIKWGFSSEGEYLGISLLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMS 705

Query: 226 GFMSQGFVEDAEEIFRKTVEK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFF 281
           G    GF E+A + +++        D   +  ++   S+ + + R+   +H  +      
Sbjct: 706 GHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRVCSV-LSSLREGRAIHSLIFHLAHD 764

Query: 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNGNPNQALELFCM 340
            D    + L+DMYAKCG +  + +VFD M+++ NV +W S+I+GY KNG    AL++F  
Sbjct: 765 LDELTSNTLIDMYAKCGDMKSSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDS 824

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           M++  + P+ +TFLG L+AC HAG V  GR+IFE M   Y ++ +++H ACMVDLLGR G
Sbjct: 825 MRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWG 884

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
            L++A  F+     KP++ +W++LL +CR+H D     IAA  + +L   +   AYV LS
Sbjct: 885 YLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDMRGEIAAERLIELEPQN-SSAYVLLS 943

Query: 461 NTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           N  A+ G+W+    LR+ M+ RGV K  G SW+
Sbjct: 944 NIYASQGRWEEANALRKAMRDRGVKKVPGYSWI 976



 Score =  135 bits (339), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 187/389 (48%), Gaps = 24/389 (6%)

Query: 36  YDSLSNPLTA--TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKC 93
           +D + +P T   T L S    Y+ +  P   + +   +   G +P+    + ++  ++  
Sbjct: 218 FDGIVDPNTVCWTCLFSG---YVKAGLPEEAVIVFERMRGEGHRPDHLAFVTVINTYISL 274

Query: 94  GALKYAGQMFDELPQRTLSAYNYMIAGYLKNG----QVEESLSLVRKLVSSGERPDGYTF 149
           G LK A  +F E+P   + A+N MI+G+ K G     +E  L++ +  V S     G   
Sbjct: 275 GKLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVL 334

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVF 209
           S I          +    +LG +VHA+ +K  + ++  + ++LV  Y K  K   A  VF
Sbjct: 335 SAI---------GIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVF 385

Query: 210 DMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK----DIVVYNAMIEGYSISIETA 265
           + + E+N +   +MI G+   G      E+F          D   + +++   ++S +  
Sbjct: 386 EALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLE 445

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
             + + H  +IK    +++ +G+ALVDMYAKCG ++DAR++F+HM  ++  +W ++I GY
Sbjct: 446 MGS-QFHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSWNTIIGGY 504

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
            ++ N ++A +LF  M  C +  +       L AC +   + +G+++   +     +   
Sbjct: 505 VQDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQV-HCLSVKCGLDRV 563

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPE 414
           +   + ++D+  + G +E A K    MPE
Sbjct: 564 LHTGSSLIDMYSKCGIIEDARKVFSSMPE 592



 Score =  131 bits (329), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 107/424 (25%), Positives = 188/424 (44%), Gaps = 78/424 (18%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H+     G+     +   ++ L+ KC  + YA + F+ L ++ ++A+N M++ Y  
Sbjct: 79  GKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSL-EKDVTAWNSMLSMYSS 137

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR-SNVPLPRNLGRMVHAQILKCDV 182
            GQ  + L     L  +   P+ +TFS++L  ST  R +NV      GR +H  ++K  +
Sbjct: 138 IGQPGKVLRSFVSLFENLIFPNKFTFSIVL--STSARETNV----EFGRQIHCSMIKMGL 191

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVE-------- 234
           + +     ALVD Y K  +   A+ VFD +++ N +C T + SG++  G  E        
Sbjct: 192 ERNSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFER 251

Query: 235 ---------------------------DAEEIFRKTVEKDIVVYNAMIEGYS------IS 261
                                      DA  +F +    D+V +N MI G+       ++
Sbjct: 252 MRGEGHRPDHLAFVTVINTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVA 311

Query: 262 IE---TARKA-------------------------LEVHCQLIKNVFFEDVKLGSALVDM 293
           IE     RK+                         L VH + IK     ++ +GS+LV M
Sbjct: 312 IEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSM 371

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           Y+KC K++ A +VF+ ++++N   W +MI GY  NG  ++ +ELF  M+      +  TF
Sbjct: 372 YSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTF 431

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
              LS C  +  ++ G + F S+     +   +     +VD+  + G+LE A +    M 
Sbjct: 432 TSLLSTCAVSHDLEMGSQ-FHSIIIKKKLTKNLFVGNALVDMYAKCGALEDARQIFEHMC 490

Query: 414 EKPN 417
           ++ N
Sbjct: 491 DRDN 494



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 84/297 (28%), Positives = 141/297 (47%), Gaps = 24/297 (8%)

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
           + L   +G+ VH++ L   + ++  L  A+VD Y K  + SYA   F+  LEK+V    S
Sbjct: 72  LALALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNS-LEKDVTAWNS 130

Query: 223 MISGFMSQG--------FVEDAEE-IFRKTVEKDIVVYNAMIEGYSISIETARKALEVHC 273
           M+S + S G        FV   E  IF       IV+  +  E    ++E  R   ++HC
Sbjct: 131 MLSMYSSIGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARE---TNVEFGR---QIHC 184

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
            +IK     +   G ALVDMYAKC ++ DA+RVFD +   N   WT +  GY K G P +
Sbjct: 185 SMIKMGLERNSYCGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEE 244

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMV 393
           A+ +F  M+    +P+++ F+  ++     G +   R +F  M       P +  +  M+
Sbjct: 245 AVIVFERMRGEGHRPDHLAFVTVINTYISLGKLKDARLLFGEMP-----SPDVVAWNVMI 299

Query: 394 DLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
              G+ G    A+++ L M +   K       ++LS+  +  ++++  +   E  KL
Sbjct: 300 SGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKL 356


>gi|296084465|emb|CBI25024.3| unnamed protein product [Vitis vinifera]
          Length = 621

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 143/453 (31%), Positives = 249/453 (54%), Gaps = 17/453 (3%)

Query: 50  SALQHYINSDT----PFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
           S LQH + S         G+  HA I + G++ +T  S  L+ ++ KCG ++ A ++FDE
Sbjct: 48  SELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDE 107

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL--KASTCCRSNV 163
           +P R+L ++N M+  + +NG  E++L L  ++   G     +T S ++   A+ CC    
Sbjct: 108 MPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFEC 167

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
                  + +H   LK  + ++  + TAL+D Y K G    A +VF+ M E++ +  +SM
Sbjct: 168 -------KQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSM 220

Query: 224 ISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE---VHCQLIKNVF 280
           ++G++     E+A  +F +     +      I     +       +E   V     K   
Sbjct: 221 VAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGI 280

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             ++ + S+L+DMYAKCG I++A  VF  +++KNV  W +++ G+ ++    +A+  F  
Sbjct: 281 GSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEK 340

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           MQ+  + PN +T++  LSAC H GLV+KGR+ F+ M R +++ P + HY+CMVD+LGRAG
Sbjct: 341 MQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAG 400

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
            L +A  F+  MP    + +W +LL+SCR++ ++E+A +AA  +F++  ++  G +V LS
Sbjct: 401 LLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHN-AGNHVLLS 459

Query: 461 NTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           N  AA  +W+ V   R  +K     K+ G SW+
Sbjct: 460 NIYAANDRWEEVARARNLLKESKAKKERGKSWI 492


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 143/451 (31%), Positives = 238/451 (52%), Gaps = 22/451 (4%)

Query: 64  GLKIHAHITKTGVKPNTN----------ISIKLLILHLKCGALKYAGQMFDELPQRTLSA 113
           G  +HA+  +  + PN N          +   LL ++ KCG+L YA ++FD +P R    
Sbjct: 247 GTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVT 306

Query: 114 YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR-NLGRM 172
           ++ +I G++   ++ ++  L + +++      G  F      ++  R+   L    +G  
Sbjct: 307 WSALIGGFVLCSRMTQAFLLFKAMLA-----QGLCFLSPTSIASALRACASLDHLRMGEQ 361

Query: 173 VHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGF 232
           +HA + K  V AD     +L+  Y K G    A  +FD M  K+ +  ++++SG++  G 
Sbjct: 362 LHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGR 421

Query: 233 VEDAEEIFRK----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGS 288
            E+A  +F+K     VE D     ++I   S  +   +     H  +I      +  + +
Sbjct: 422 AEEAFLVFKKMQACNVEPDAATMVSLIPACS-HLAALQHGRCSHGSVIIRGLASETSICN 480

Query: 289 ALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348
           AL+DMYAKCG+ID +R+VF+ M  +++ +W +MI GYG +G   +A  LF  M      P
Sbjct: 481 ALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPP 540

Query: 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKF 408
           + VTF+  LSAC H+GLV +G+  F  M   Y + P+MEHY CMVDLL R G L++A +F
Sbjct: 541 DGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEF 600

Query: 409 VLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGK 468
           +  MP + +  VW ALL +CR++ ++++    +  I +L   +  G +V LSN  +AAG+
Sbjct: 601 IQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGP-EGTGNFVLLSNIYSAAGR 659

Query: 469 WDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           +D   E+R   K++G  K  GCSW+     L
Sbjct: 660 FDEAAEVRIIQKVQGFKKSPGCSWIEINGSL 690



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 173/372 (46%), Gaps = 50/372 (13%)

Query: 20  YTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPN 79
           + + P N TFP  L+   +L++            H+        G  IH H    G++ +
Sbjct: 119 HRVAPNNYTFPFALKACSALAD------------HHC-------GRAIHRHAIHAGLQAD 159

Query: 80  TNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLS--LVRKL 137
             +S  LL +++KC  L  A  +F  +P R L A+N M+AGY  +G    +++  L  ++
Sbjct: 160 LFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQM 219

Query: 138 VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRM-----VHAQILKCDVK--------- 183
                RP+  T   +L          PL    G +     VHA  ++  +          
Sbjct: 220 QMHRLRPNASTLVALL----------PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKL 269

Query: 184 ADDVLY-TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            D VL  TAL+D Y K G   YAR VFD M  +N +  +++I GF+    +  A  +F+ 
Sbjct: 270 TDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKA 329

Query: 243 TVEKDIVVYNAMIEGYSI----SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
            + + +   +      ++    S++  R   ++H  L K+    D+  G++L+ MYAK G
Sbjct: 330 MLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAG 389

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            ID A  +FD M  K+  ++++++ GY +NG   +A  +F  MQ C V+P+  T +  + 
Sbjct: 390 LIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIP 449

Query: 359 ACGHAGLVDKGR 370
           AC H   +  GR
Sbjct: 450 ACSHLAALQHGR 461



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 163/358 (45%), Gaps = 31/358 (8%)

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG--QVEESLSLVRKLVSSGERPDGY 147
           H+  G L  A  +FD++P   +  YN +I  Y  +      + L L R+++     P+ Y
Sbjct: 67  HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 148 TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARI 207
           TF   LKA +    +     + GR +H   +   ++AD  + TAL+D YVK      A  
Sbjct: 127 TFPFALKACSALADH-----HCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAH 181

Query: 208 VFDMMLEKNVICSTSMISGFMSQGFVEDA--------EEIFRKTVEKDIVV--------Y 251
           +F  M  ++++   +M++G+   G    A         ++ R       +V         
Sbjct: 182 IFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQ 241

Query: 252 NAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311
            A+ +G S+     R  L  + +  K+   + V LG+AL+DMYAKCG +  ARRVFD M 
Sbjct: 242 GALAQGTSVHAYCIRACLHPN-RNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMP 300

Query: 312 QKNVFTWTSMIDGYGKNGNPNQALELFCMMQE---CCVQPNYVTFLGALSACGHAGLVDK 368
            +N  TW+++I G+       QA  LF  M     C + P  +    AL AC     +  
Sbjct: 301 ARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRM 358

Query: 369 GREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           G ++   + +   +   +     ++ +  +AG ++QA+    EM  K ++  ++AL+S
Sbjct: 359 GEQLHALLAKS-GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSALVS 414



 Score = 96.3 bits (238), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 155/337 (45%), Gaps = 15/337 (4%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L+ TS+ SAL+   + D    G ++HA + K+GV  +      LL ++ K G +  A  +
Sbjct: 338 LSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIAL 397

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           FDE+  +   +Y+ +++GY++NG+ EE+  + +K+ +    PD  T   ++ A   C   
Sbjct: 398 FDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPA---CSHL 454

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
             L    GR  H  ++   + ++  +  AL+D Y K G+   +R VF+MM  ++++   +
Sbjct: 455 AALQH--GRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNT 512

Query: 223 MISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKN 278
           MI+G+   G  ++A  +F +        D V +  ++   S S          H      
Sbjct: 513 MIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGY 572

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQALEL 337
                ++    +VD+ ++ G +D+A      M  + +V  W +++       N +   ++
Sbjct: 573 GLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKV 632

Query: 338 FCMMQECCVQ--PNYVTFLGALSACGHAGLVDKGREI 372
             M+QE   +   N+V      SA   AG  D+  E+
Sbjct: 633 SRMIQELGPEGTGNFVLLSNIYSA---AGRFDEAAEV 666


>gi|147804811|emb|CAN64701.1| hypothetical protein VITISV_037299 [Vitis vinifera]
          Length = 1111

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 153/439 (34%), Positives = 247/439 (56%), Gaps = 24/439 (5%)

Query: 62   FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
            F+GL I  H T   +  N      LL ++ K G LK A + F  + ++   A+N M++GY
Sbjct: 690  FHGLIIRRHYTLDQMVQNA-----LLSMYCKFGFLKLAEKFFGRVNEQNFEAWNLMVSGY 744

Query: 122  LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
             K G + + + L R++   G   D  +   ++ + +   +      +L R +H  ++K  
Sbjct: 745  GKIGLIMKCIGLFREMQCLGIESDSNSLVSVVSSCSQLGAT-----HLARSIHCYMIKNL 799

Query: 182  VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
            +  +  +  +L+D Y K G  + AR +F   + ++++   ++IS +   G   +A  ++ 
Sbjct: 800  MDENVSVNNSLIDMYGKSGNLTIARRIF-CRIPRDIVTWNTLISSYAHCGHFAEALSLYD 858

Query: 242  KTVEKDIVVYNAMIE------GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
            K V +D+   +A +        +  S+E   K   VH  +    F  ++ + +AL+DMYA
Sbjct: 859  KMVLEDLKPNSATLVXVLSACSHLASLEEGEK---VHNYINGGKFEFNLSIATALIDMYA 915

Query: 296  KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
            KCG+++ +R +F+ M +++V TW  MI GYG +G+   A+E F  M+E   +PN +TFL 
Sbjct: 916  KCGQLEKSREIFNSMHERDVITWNVMISGYGMHGDARSAIEXFQQMEESSAKPNGLTFLA 975

Query: 356  ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
             LSAC HAGLV +G+ +F  M+ DYS+ P ++HYACMVDLLGR+G+L++A   VL MP  
Sbjct: 976  VLSACAHAGLVKEGKYLFGKMQ-DYSVAPNLKHYACMVDLLGRSGNLQEAEALVLSMPIS 1034

Query: 416  PNSDVWAALLSSCRLHDDVEMA-NIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
            P+  VW ALLSSC++H+++EM   IA + I     ND  G YV +SN  ++ GKW+   +
Sbjct: 1035 PDGGVWGALLSSCKIHNEIEMGIRIAKHAIXSDVEND--GYYVMISNMYSSIGKWEEAEK 1092

Query: 475  LREKMKLRGVLKDTGCSWV 493
             R  MK RGV K TG S V
Sbjct: 1093 ARGIMKERGVRKKTGWSAV 1111



 Score =  127 bits (319), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/428 (23%), Positives = 190/428 (44%), Gaps = 19/428 (4%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +L    Q   N      G  +H  + KTG+  +  +   LL ++ KCG  + A + F E+
Sbjct: 569 TLEGGFQACGNLGALLEGRCLHGLVVKTGMDYSQVVQSSLLSMYSKCGNPEEAHRSFCEV 628

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
             + + ++  MI+ Y + G   E + +  +++ SG  PDG   S +L + +         
Sbjct: 629 LNKDIISWTSMISAYSRMGWATECIDMFWEMLVSGIYPDGIVISCMLSSFSNSMRVFE-- 686

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
               +  H  I++     D ++  AL+  Y K G    A   F  + E+N      M+SG
Sbjct: 687 ---AKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAEKFFGRVNEQNFEAWNLMVSG 743

Query: 227 FMSQGFVEDAEEIFRKTVEKDI---VVYNAMIEGYSISIETARKALEVHCQLIKNVFFED 283
           +   G +     +FR+     I         +      +     A  +HC +IKN+  E+
Sbjct: 744 YGKIGLIMKCIGLFREMQCLGIESDSNSLVSVVSSCSQLGATHLARSIHCYMIKNLMDEN 803

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
           V + ++L+DMY K G +  ARR+F  +  +++ TW ++I  Y   G+  +AL L+  M  
Sbjct: 804 VSVNNSLIDMYGKSGNLTIARRIFCRI-PRDIVTWNTLISSYAHCGHFAEALSLYDKMVL 862

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH----YACMVDLLGRA 399
             ++PN  T +  LSAC H   +++G ++      +Y    K E        ++D+  + 
Sbjct: 863 EDLKPNSATLVXVLSACSHLASLEEGEKV-----HNYINGGKFEFNLSIATALIDMYAKC 917

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVAL 459
           G LE++ +    M E+ +   W  ++S   +H D   A     ++ + +A      ++A+
Sbjct: 918 GQLEKSREIFNSMHER-DVITWNVMISGYGMHGDARSAIEXFQQMEESSAKPNGLTFLAV 976

Query: 460 SNTLAAAG 467
            +  A AG
Sbjct: 977 LSACAHAG 984



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 77/303 (25%), Positives = 140/303 (46%), Gaps = 13/303 (4%)

Query: 129 ESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVL 188
           E L  + ++   GERP+  T     +A  C      L    GR +H  ++K  +    V+
Sbjct: 550 ECLCEMHRIGGDGERPNFRTLEGGFQA--CGNLGALLE---GRCLHGLVVKTGMDYSQVV 604

Query: 189 YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----V 244
            ++L+  Y K G    A   F  +L K++I  TSMIS +   G+  +  ++F +     +
Sbjct: 605 QSSLLSMYSKCGNPEEAHRSFCEVLNKDIISWTSMISAYSRMGWATECIDMFWEMLVSGI 664

Query: 245 EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDAR 304
             D +V + M+  +S S+    +A   H  +I+  +  D  + +AL+ MY K G +  A 
Sbjct: 665 YPDGIVISCMLSSFSNSMRVF-EAKAFHGLIIRRHYTLDQMVQNALLSMYCKFGFLKLAE 723

Query: 305 RVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG 364
           + F  + ++N   W  M+ GYGK G   + + LF  MQ   ++ +  + +  +S+C   G
Sbjct: 724 KFFGRVNEQNFEAWNLMVSGYGKIGLIMKCIGLFREMQCLGIESDSNSLVSVVSSCSQLG 783

Query: 365 LVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAAL 424
                R I   M ++  M   +     ++D+ G++G+L  A +    +P   +   W  L
Sbjct: 784 ATHLARSIHCYMIKNL-MDENVSVNNSLIDMYGKSGNLTIARRIFCRIPR--DIVTWNTL 840

Query: 425 LSS 427
           +SS
Sbjct: 841 ISS 843



 Score = 44.7 bits (104), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 54/242 (22%), Positives = 108/242 (44%), Gaps = 29/242 (11%)

Query: 114 YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMV 173
           YN+MI+ Y+ +GQ+E+   ++++L      PD  T+++ L   T C S   +       V
Sbjct: 195 YNHMISLYISDGQLEKVPGMIQEL-KKNTSPDVVTYNLWL---TVCASQNDV--ETAEKV 248

Query: 174 HAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE----KNVICSTSMISGFMS 229
             +I K  +  D V Y++L + Y+K G    A    + M +    K  I  +S+IS   +
Sbjct: 249 LLEIKKAKIDPDWVTYSSLTNLYIKKGLLDKAATTLNEMEKRTSRKGRIAYSSLISLHTN 308

Query: 230 QGFVEDAEEIFRKTVEKDIVVYNAMIEG-YSISIETARKALEVHCQLIKNVFFE------ 282
               +    I++K       +++ M +  Y+  I +  K  E   +  +N++ E      
Sbjct: 309 MQDKDGVHRIWKKLKS----IFHKMNDAEYTCMISSLVKLGEF--EEAENLYSEWTSVSP 362

Query: 283 --DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV----FTWTSMIDGYGKNGNPNQALE 336
             D ++ + L+  Y    +++ A + ++ M ++ +     TW  +  GY K     + L+
Sbjct: 363 TGDSRVPNILLAAYINKNEMEMAEKFYNQMVERGITPSYTTWELLTWGYLKKKQMEKVLD 422

Query: 337 LF 338
            F
Sbjct: 423 YF 424


>gi|357162206|ref|XP_003579338.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g20730-like [Brachypodium distachyon]
          Length = 558

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 147/432 (34%), Positives = 236/432 (54%), Gaps = 10/432 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA + K     +  +   L+ +HL+CG++  A Q+F E+ ++ + A+N ++ G ++
Sbjct: 131 GEQVHACVAKGRFVGDVFVQSALMDMHLRCGSVVDAMQLFAEMERKDVVAWNALLRGLVE 190

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
             Q  ++L L+  ++     PD +TF   LKA       V +  N+  ++H  I+K    
Sbjct: 191 RAQYGDALGLLPSMLRGAMLPDHFTFGSALKAC----GAVSVLANV-ELIHTCIIKLGYW 245

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF-MSQGFVEDAEEIFRK 242
            + V+  +++D+Y K    S AR+++D + E +++ ST++ISG+ M +   EDA E+F K
Sbjct: 246 GEKVVIGSIIDAYAKCRGLSSARLIYDSICEPDLVSSTALISGYSMDRNHSEDAMELFCK 305

Query: 243 TVEKDIVV---YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
              K + +     + + G   ++ + R   ++H  + K     DV L +A+VDMYAK G+
Sbjct: 306 IHRKGLRIDGVLLSSLLGLCANVASLRFGTQIHAYMCKRQPMTDVALDNAVVDMYAKAGE 365

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
             DARR FD M  +NV +WTS+I   GKNG    A+ LF  M E  V+PN VTFL  LSA
Sbjct: 366 FADARRAFDEMPYRNVVSWTSLITACGKNGFGEDAVSLFDRMVEDGVKPNDVTFLSLLSA 425

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           CGH+GL  KG E F SM   Y + P+ EHY+  +DLL R G L+ A K V  +  +PNS 
Sbjct: 426 CGHSGLTSKGMEYFTSMMSKYGIDPRAEHYSSAIDLLARGGQLKDAWKLVQNIDIEPNSS 485

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           ++ A+L +C+ H  + +   AA  +F + A +    Y  L+N  A +  W+     R+ M
Sbjct: 486 MFGAMLGACKTHGSMPLGETAAKNLFTI-APESSVHYAVLANMYAESSLWEDAQRTRKLM 544

Query: 480 KLRGVLKDTGCS 491
                 K  GCS
Sbjct: 545 AETSGGKVAGCS 556



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 100/374 (26%), Positives = 186/374 (49%), Gaps = 21/374 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H  I  +   P+ ++S KL+I + K G +  A ++FD +P R++ ++  M++GY +
Sbjct: 30  GRSVHHQIIASAAPPDLHMSTKLVIFYAKHGDVAAARKVFDGMPHRSVVSWTAMVSGYSR 89

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKA---STCCRSNVPLPRNLGRMVHAQILKC 180
           NGQ  E+L L   +++SG RP+ +T+  +  A   + C RS        G  VHA + K 
Sbjct: 90  NGQTREALDLFTLMLASGVRPNQFTYGSVASACAGAGCVRS--------GEQVHACVAKG 141

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA---- 236
               D  + +AL+D +++ G    A  +F  M  K+V+   +++ G + +    DA    
Sbjct: 142 RFVGDVFVQSALMDMHLRCGSVVDAMQLFAEMERKDVVAWNALLRGLVERAQYGDALGLL 201

Query: 237 EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFF-EDVKLGSALVDMYA 295
             + R  +  D   + + ++        A   L +H  +IK  ++ E V +GS ++D YA
Sbjct: 202 PSMLRGAMLPDHFTFGSALKACGAVSVLANVEL-IHTCIIKLGYWGEKVVIGS-IIDAYA 259

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ-ALELFCMMQECCVQPNYVTFL 354
           KC  +  AR ++D + + ++ + T++I GY  + N ++ A+ELFC +    ++ + V   
Sbjct: 260 KCRGLSSARLIYDSICEPDLVSSTALISGYSMDRNHSEDAMELFCKIHRKGLRIDGVLLS 319

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             L  C +   +  G +I   M +   M       A +VD+  +AG    A +   EMP 
Sbjct: 320 SLLGLCANVASLRFGTQIHAYMCKRQPMTDVALDNA-VVDMYAKAGEFADARRAFDEMPY 378

Query: 415 KPNSDVWAALLSSC 428
           + N   W +L+++C
Sbjct: 379 R-NVVSWTSLITAC 391



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 56/160 (35%), Positives = 86/160 (53%), Gaps = 2/160 (1%)

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
           R+   VH Q+I +    D+ + + LV  YAK G +  AR+VFD M  ++V +WT+M+ GY
Sbjct: 28  RRGRSVHHQIIASAAPPDLHMSTKLVIFYAKHGDVAAARKVFDGMPHRSVVSWTAMVSGY 87

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
            +NG   +AL+LF +M    V+PN  T+    SAC  AG V  G ++   + +   +   
Sbjct: 88  SRNGQTREALDLFTLMLASGVRPNQFTYGSVASACAGAGCVRSGEQVHACVAKGRFVGDV 147

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
               A M D+  R GS+  A++   EM E+ +   W ALL
Sbjct: 148 FVQSALM-DMHLRCGSVVDAMQLFAEM-ERKDVVAWNALL 185



 Score = 54.3 bits (129), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 29/95 (30%), Positives = 56/95 (58%), Gaps = 4/95 (4%)

Query: 63  YGLKIHAHITKTGVKPNTNISI--KLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120
           +G +IHA++ K   +P T++++   ++ ++ K G    A + FDE+P R + ++  +I  
Sbjct: 333 FGTQIHAYMCKR--QPMTDVALDNAVVDMYAKAGEFADARRAFDEMPYRNVVSWTSLITA 390

Query: 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
             KNG  E+++SL  ++V  G +P+  TF  +L A
Sbjct: 391 CGKNGFGEDAVSLFDRMVEDGVKPNDVTFLSLLSA 425


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 153/481 (31%), Positives = 257/481 (53%), Gaps = 42/481 (8%)

Query: 38  SLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALK 97
           SLS    A +L   L           GL+I+    K+ +  +  ++   + ++ KC AL 
Sbjct: 384 SLSGVFRACALVKGLSE---------GLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALA 434

Query: 98  YAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
            A ++FDE+ +R   ++N +IA + +NG+  E+L L   ++ S   PD +TF  ILKA T
Sbjct: 435 EAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACT 494

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
                       G  +H+ I+K  + ++  +  +L+D Y K G    A  +     ++  
Sbjct: 495 ------GGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRAN 548

Query: 218 ICST--------------------SMISGFMSQGFVEDAEEIFRKTVEKDIV----VYNA 253
           +  T                    S+ISG++ +   EDA+ +F + +E  I      Y  
Sbjct: 549 VSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYAT 608

Query: 254 MIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK 313
           +++  + ++ +A    ++H Q+IK     DV + S LVDMY+KCG + D+R +F+   ++
Sbjct: 609 VLDTCA-NLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRR 667

Query: 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF 373
           +  TW +MI GY  +G   +A++LF  M    ++PN+VTF+  L AC H GL+DKG E F
Sbjct: 668 DFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYF 727

Query: 374 ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH-D 432
             M+RDY + P++ HY+ MVD+LG++G +++AL+ + EMP + +  +W  LL  C +H +
Sbjct: 728 YMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRN 787

Query: 433 DVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSW 492
           +VE+A  A   + +L+  D   AY  LSN  A AG W+ V++LR  M+   + K+ GCSW
Sbjct: 788 NVEVAEEATAALLRLDPQD-SSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSW 846

Query: 493 V 493
           V
Sbjct: 847 V 847



 Score =  118 bits (296), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 101/452 (22%), Positives = 201/452 (44%), Gaps = 55/452 (12%)

Query: 15  THNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKT 74
           T    Y  VP    F   L   +S+S     T+     +          G + HAH+  +
Sbjct: 22  TEKISYRRVPSFSYFTDFLNQVNSVST----TNFSFVFKECAKQGALELGKQAHAHMIIS 77

Query: 75  GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMI---------------- 118
           G +P T +   LL ++        A  +FD++P R + ++N MI                
Sbjct: 78  GFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKSNDMFKANSFF 137

Query: 119 ---------------AGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
                          +GYL+NG+  +S+ +   +   G   DG TF++ILK  +      
Sbjct: 138 NMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDT- 196

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
               +LG  +H  +++     D V  +AL+D Y KG +   +  VF  + EKN +  +++
Sbjct: 197 ----SLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAI 252

Query: 224 ISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNV 279
           I+G +    +  A + F++  + +      +Y +++   + ++   R   ++H   +K+ 
Sbjct: 253 IAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCA-ALSELRLGGQLHAHALKSD 311

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
           F  D  + +A +DMYAKC  + DA+ +FD+ +  N  ++ +MI GY +  +  +AL LF 
Sbjct: 312 FAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFH 371

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACM----VDL 395
            +    +  + ++  G   AC     + +G +I+       ++K  +    C+    +D+
Sbjct: 372 RLMSSGLGFDEISLSGVFRACALVKGLSEGLQIY-----GLAIKSSLSLDVCVANAAIDM 426

Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
            G+  +L +A +   EM  + ++  W A++++
Sbjct: 427 YGKCQALAEAFRVFDEM-RRRDAVSWNAIIAA 457



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 169/360 (46%), Gaps = 16/360 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH  + + G   +   +  LL ++ K      + ++F  +P++   +++ +IAG ++
Sbjct: 199 GMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQ 258

Query: 124 NGQVEESLSLVRKL--VSSGERPDGYTFSMILKASTCCRSNVPLPR-NLGRMVHAQILKC 180
           N  +  +L   +++  V++G     Y        ++  RS   L    LG  +HA  LK 
Sbjct: 259 NNLLSLALKFFKEMQKVNAGVSQSIY--------ASVLRSCAALSELRLGGQLHAHALKS 310

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
           D  AD ++ TA +D Y K      A+I+FD     N     +MI+G+  +     A  +F
Sbjct: 311 DFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLF 370

Query: 241 RKTVEKDIVVYNAMIEGYSIS---IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
            + +   +      + G   +   ++   + L+++   IK+    DV + +A +DMY KC
Sbjct: 371 HRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKC 430

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
             + +A RVFD M++++  +W ++I  + +NG   + L LF  M    ++P+  TF   L
Sbjct: 431 QALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSIL 490

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            AC   G +  G EI  S+ +   M         ++D+  + G +E+A K      ++ N
Sbjct: 491 KACT-GGSLGYGMEIHSSIVKS-GMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRAN 548



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 69/296 (23%), Positives = 138/296 (46%), Gaps = 16/296 (5%)

Query: 70  HITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEE 129
           H+T++ V  N  ++ K  I + +  +  Y     +++   + + ++++     K G +E 
Sbjct: 9   HMTRSVVSFNRCLTEK--ISYRRVPSFSYFTDFLNQVNSVSTTNFSFVFKECAKQGALEL 66

Query: 130 SLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLY 189
                  ++ SG RP  +  + +L+  T  R  V        MV  ++   DV    V +
Sbjct: 67  GKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVS-----ASMVFDKMPLRDV----VSW 117

Query: 190 TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVE 245
             +++ Y K      A   F+MM  ++V+   SM+SG++  G    + E+F    R+ +E
Sbjct: 118 NKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIE 177

Query: 246 KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARR 305
            D   +  +++  S  +E     +++H  +++     DV   SAL+DMYAK  +  ++ R
Sbjct: 178 FDGRTFAIILKVCSF-LEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLR 236

Query: 306 VFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           VF  + +KN  +W+++I G  +N   + AL+ F  MQ+     +   +   L +C 
Sbjct: 237 VFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCA 292



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 92/196 (46%), Gaps = 8/196 (4%)

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             DV   + +++ Y+K   +  A   F+ M  ++V +W SM+ GY +NG   +++E+F  
Sbjct: 111 LRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVD 170

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           M    ++ +  TF   L  C        G +I   + R       +   + ++D+  +  
Sbjct: 171 MGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVR-VGCDTDVVAASALLDMYAKGK 229

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
              ++L+    +PEK NS  W+A+++ C  ++ + +A     E+ K+NA      Y ++ 
Sbjct: 230 RFVESLRVFQGIPEK-NSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVL 288

Query: 461 NTLAAAGKWDSVTELR 476
            + AA      ++ELR
Sbjct: 289 RSCAA------LSELR 298


>gi|297746037|emb|CBI16093.3| unnamed protein product [Vitis vinifera]
          Length = 702

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 163/512 (31%), Positives = 258/512 (50%), Gaps = 78/512 (15%)

Query: 35  NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           N+ + S  L      SA+Q          G ++HAH+ K      T +   LL L+ KCG
Sbjct: 213 NHYTYSTMLAVCGTISAIQE---------GKQLHAHVVKMQYLSETAVGNALLTLYSKCG 263

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
            ++ A  +F+ L QR + ++   I G+ ++G  +++L     +  SG  P+ +TFS++L 
Sbjct: 264 MMEEAEIVFENLGQRNIISWTASINGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLA 323

Query: 155 ASTCC------------------------------RSNVP---------LP--------- 166
           +  C                                 N P         LP         
Sbjct: 324 SCGCDLGKWMKQRTSSNRWGGQHLMSIFLLRKMIEEGNKPTSLRPNQFVLPSILKACGHL 383

Query: 167 --RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
             R  G  +H  ILK   ++D  + +AL+  Y K G    A  VFD +   NV+   ++I
Sbjct: 384 SDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWI--PNVVSWNTLI 441

Query: 225 SGF---MSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFF 281
           +GF   + QGF   +            V  ++++   + ++   R   E+H   +     
Sbjct: 442 AGFSQMLDQGFCPSS------------VTISSLLPACT-NVANLRHGKEIHGYAMVIGVE 488

Query: 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM 341
           +DV + SALVDMYAKCG I +A+ +F  M ++N  TW S+I GY  +G  N+A+ELF  M
Sbjct: 489 KDVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQM 548

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGS 401
           +E   + +++TF   L+AC HAG+V+ G  +F  M+  Y ++P++EHYACMVDLLGRAG 
Sbjct: 549 EESDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQEKYRIEPRLEHYACMVDLLGRAGK 608

Query: 402 LEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSN 461
           L +A   +  MP +P+  VW ALL +CR H ++E+A +AA  +F+L   + PG+ + LSN
Sbjct: 609 LSEAYDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELEP-ESPGSSLLLSN 667

Query: 462 TLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             A AG+W +  ++++ MK R   K  GCSW+
Sbjct: 668 LYADAGRWGNAAKMKKMMKQRKFGKFPGCSWI 699



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 63/219 (28%), Positives = 119/219 (54%), Gaps = 11/219 (5%)

Query: 147 YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR 206
           Y FS +   S C R        LGR  H  ++K  + +D+ + T+L+D Y K G+   A 
Sbjct: 115 YVFSAL---SFCGREGCV---ELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAV 168

Query: 207 IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISI 262
            V+D M   +      +IS +   GF   A ++F +        +   Y+ M+     +I
Sbjct: 169 RVYDKMTSLDAATCNCLISAYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTML-AVCGTI 227

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
              ++  ++H  ++K  +  +  +G+AL+ +Y+KCG +++A  VF+++ Q+N+ +WT+ I
Sbjct: 228 SAIQEGKQLHAHVVKMQYLSETAVGNALLTLYSKCGMMEEAEIVFENLGQRNIISWTASI 287

Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           +G+ ++G+  +AL+ F MM+E  ++PN  TF   L++CG
Sbjct: 288 NGFYQHGDFKKALKQFSMMRESGIEPNEFTFSIVLASCG 326



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 97/465 (20%), Positives = 193/465 (41%), Gaps = 60/465 (12%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G + H  + K G+  +  +   L+ ++ KCG +  A +++D++     +  N +I+ Y +
Sbjct: 132 GRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLISAYAR 191

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG   ++  +  ++ + G RP+ YT+S +L     C +   +    G+ +HA ++K    
Sbjct: 192 NGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAV---CGTISAIQE--GKQLHAHVVKMQYL 246

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
           ++  +  AL+  Y K G    A IVF+ + ++N+I  T+ I+GF   G  + A + F   
Sbjct: 247 SETAVGNALLTLYSKCGMMEEAEIVFENLGQRNIISWTASINGFYQHGDFKKALKQFSMM 306

Query: 241 -RKTVEKDIVVYNAMIEGYSISIETARKALE----------VHCQLIKNVFFEDVKLGS- 288
               +E +   ++ ++      +    K             +   L++ +  E  K  S 
Sbjct: 307 RESGIEPNEFTFSIVLASCGCDLGKWMKQRTSSNRWGGQHLMSIFLLRKMIEEGNKPTSL 366

Query: 289 -----ALVDMYAKCGKIDDARRVFDHMQ--------QKNVFTWTSMIDGYGKNGNPNQAL 335
                 L  +   CG + D RR  ++M         + + +  +++I  Y K G+  +A 
Sbjct: 367 RPNQFVLPSILKACGHLSD-RRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKAC 425

Query: 336 EL----------------FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD 379
            +                F  M +    P+ VT    L AC +   +  G+EI       
Sbjct: 426 RVFDWIPNVVSWNTLIAGFSQMLDQGFCPSSVTISSLLPACTNVANLRHGKEI-----HG 480

Query: 380 YSMKPKMEH----YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVE 435
           Y+M   +E      + +VD+  + G + +A      MPE+ N+  W +L+     H    
Sbjct: 481 YAMVIGVEKDVYVRSALVDMYAKCGYISEAKILFYMMPER-NTVTWNSLIFGYANHGYCN 539

Query: 436 MANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
            A    N++ + +       + A+ N  + AG  +    L  KM+
Sbjct: 540 EAIELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGESLFRKMQ 584


>gi|449482847|ref|XP_004156421.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Cucumis sativus]
          Length = 833

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 152/471 (32%), Positives = 249/471 (52%), Gaps = 47/471 (9%)

Query: 64  GLKIHAHITKTGVKPN----TNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIA 119
           G  +HA I K+    N      I   L+ ++ +CG L  A ++FDE+  R   ++N +I 
Sbjct: 64  GSSLHASIIKSFELSNHYNGVVIMNSLISMYDRCGKLPDAVKVFDEMVTRDTISWNALIG 123

Query: 120 GYLKNGQV---------------------------------EESLSLVRKLVSSGE-RPD 145
           G+++NG+                                  E SL L ++++S G   P+
Sbjct: 124 GFVRNGKFFAGLGMQVFYEMGERNVITWTAVISGLAQNGYHEHSLKLFKEMMSYGSVEPN 183

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
             T+  +L   T C     L    G  +H  I+K  +++D  + +AL+D Y K G+   A
Sbjct: 184 SLTYLSLL---TACSGLEALKE--GCQIHGLIMKLGIQSDLCIGSALMDMYSKSGRIGEA 238

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN---AMIEGYSISI 262
             +F++  E +++  T +++GF   G  E+A +IF K ++  I +     +++ G   + 
Sbjct: 239 WKIFELAEELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGNVVSVVLGVFGAD 298

Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
            + R   +VH  ++K  F  +  + + L++MY+KCG +D++ +VFD M+++N  TW SMI
Sbjct: 299 TSLRLGQQVHSFVVKRNFICNPFVSNGLINMYSKCGALDESMKVFDRMRERNSVTWNSMI 358

Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382
             + ++G+  +AL+L+  MQ    +P  VTFL  L AC HAGLV KG E  +SM +D+ M
Sbjct: 359 AAFARHGDALKALQLYEDMQLEGAKPTDVTFLSLLHACSHAGLVKKGMEFLKSMTKDHGM 418

Query: 383 KPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAAN 442
            P+ EH+AC+VD+LGRAG L +A  F+ ++PE+P   VW ALL +C L+ D ++   AA 
Sbjct: 419 NPRSEHHACVVDMLGRAGMLSEARNFIEKLPEQPGLLVWQALLGACSLYGDSKIGKYAAE 478

Query: 443 EIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            +F     D P  YV L+N  ++ G W        KMK  G  K+TG SW+
Sbjct: 479 HLFS-ETPDSPVPYVLLANIYSSEGNWKERARTIRKMKEVGTAKETGISWI 528



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 69/308 (22%), Positives = 150/308 (48%), Gaps = 45/308 (14%)

Query: 168 NLGRMVHAQILKCDVKADD----VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
           +LG  +HA I+K    ++     V+  +L+  Y + GK   A  VFD M+ ++ I   ++
Sbjct: 62  HLGSSLHASIIKSFELSNHYNGVVIMNSLISMYDRCGKLPDAVKVFDEMVTRDTISWNAL 121

Query: 224 ISGFMSQG--FVEDAEEIFRKTVEKDIVVYNAMIEGYS---------------------- 259
           I GF+  G  F     ++F +  E++++ + A+I G +                      
Sbjct: 122 IGGFVRNGKFFAGLGMQVFYEMGERNVITWTAVISGLAQNGYHEHSLKLFKEMMSYGSVE 181

Query: 260 ------ISIETARKALE-------VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRV 306
                 +S+ TA   LE       +H  ++K     D+ +GSAL+DMY+K G+I +A ++
Sbjct: 182 PNSLTYLSLLTACSGLEALKEGCQIHGLIMKLGIQSDLCIGSALMDMYSKSGRIGEAWKI 241

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           F+  ++ ++ + T ++ G+  NG   +A+++F  M +  ++ +       L   G    +
Sbjct: 242 FELAEELDMVSLTVILAGFTHNGCEEEAIQIFLKMLKMGIEIDGNVVSVVLGVFGADTSL 301

Query: 367 DKGREIFE-SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
             G+++    ++R++   P + +   ++++  + G+L++++K    M E+ NS  W +++
Sbjct: 302 RLGQQVHSFVVKRNFICNPFVSN--GLINMYSKCGALDESMKVFDRMRER-NSVTWNSMI 358

Query: 426 SSCRLHDD 433
           ++   H D
Sbjct: 359 AAFARHGD 366


>gi|449433085|ref|XP_004134328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Cucumis sativus]
          Length = 601

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 163/498 (32%), Positives = 261/498 (52%), Gaps = 49/498 (9%)

Query: 26  NQTFPPKLQNYDSLSNPLTATSLPS-------ALQ---HYINSDTPFYGLKI-------- 67
           NQ   P +  Y+++    +  S PS       A+Q   HY ++ T  + LK+        
Sbjct: 76  NQVQYPNVHLYNTMIRAHSHNSQPSQAFATFFAMQRDGHYADNFTFPFLLKVCTGNVWLP 135

Query: 68  -----HAHITKTGVKPNTNISIKLLILHLKCGA--LKYAGQMFDEL-PQRTLSAYNYMIA 119
                HA I K G   +  +   L+  + KCG+  +  A ++F  +  +R + ++N MI+
Sbjct: 136 VIESVHAQIEKFGFMSDVFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMIS 195

Query: 120 GYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           G  K G  EE+    RK+       DG +++ +L               +G+M  A  L 
Sbjct: 196 GLAKGGLYEEA----RKVFDEMPEKDGISWNTMLDGYV----------KVGKMDDAFKLF 241

Query: 180 CDVKADDVL-YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
            ++   +V+ ++ +V  Y K G    AR++FD M  KN++  T ++SGF  +G   +A  
Sbjct: 242 DEMPERNVVSWSTMVLGYCKAGDMEMARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAIS 301

Query: 239 IFRKTVEKDIVVYNAMIEGYSISIETARKAL-----EVHCQLIKNVFFEDVKLGSALVDM 293
           +F +  +  + + N  +   SI    A   L     ++H  +  N F    ++ +ALVDM
Sbjct: 302 LFDQMEKACLKLDNGTV--MSILAACAESGLLGLGEKIHASIKNNNFKCTTEISNALVDM 359

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           YAKCG+++ A  VF+ ++ K+V +W +M+ G   +G+  +ALELF  M+E    PN VT 
Sbjct: 360 YAKCGRLNIAYDVFNDIKNKDVVSWNAMLQGLAMHGHGVKALELFKRMKEEGFSPNKVTM 419

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           +G L AC HAGL+D G   F +MERDY++ P++EHY CMVDLLGR G LE+A++ +  MP
Sbjct: 420 IGVLCACTHAGLIDDGIRYFSTMERDYTLVPEVEHYGCMVDLLGRKGRLEEAIRLIRNMP 479

Query: 414 EKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473
             PN+ +W  LL +CR+H+ VE+A    + + +L   D  G +  LSN  AAAG W+ V 
Sbjct: 480 MAPNAIIWGTLLGACRMHNAVELAREVLDHLVELEPTD-SGNFSMLSNIYAAAGDWNCVA 538

Query: 474 ELREKMKLRGVLKDTGCS 491
             R +M+  G  K +G S
Sbjct: 539 NTRLRMRSIGTKKPSGAS 556



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 189/386 (48%), Gaps = 23/386 (5%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++HA I K+ +  +  +  KL+     C  +  A   F+++    +  YN MI  +  N 
Sbjct: 38  QLHAQILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAHSHNS 97

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           Q  ++ +    +   G   D +TF  +LK    C  NV LP  +   VHAQI K    +D
Sbjct: 98  QPSQAFATFFAMQRDGHYADNFTFPFLLKV---CTGNVWLP--VIESVHAQIEKFGFMSD 152

Query: 186 DVLYTALVDSYVKGGK---TSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             +  +L+DSY K G    ++  ++   M   ++V+   SMISG    G  E+A ++F +
Sbjct: 153 VFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEARKVFDE 212

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
             EKD + +N M++GY + +     A ++  ++ +     +V   S +V  Y K G ++ 
Sbjct: 213 MPEKDGISWNTMLDGY-VKVGKMDDAFKLFDEMPE----RNVVSWSTMVLGYCKAGDMEM 267

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           AR +FD M  KN+ +WT ++ G+ + G   +A+ LF  M++ C++ +  T +  L+AC  
Sbjct: 268 ARMLFDKMPVKNLVSWTIIVSGFAEKGLAREAISLFDQMEKACLKLDNGTVMSILAACAE 327

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV-- 420
           +GL+  G +I  S++ + + K   E    +VD+  + G L  A     ++    N DV  
Sbjct: 328 SGLLGLGEKIHASIKNN-NFKCTTEISNALVDMYAKCGRLNIAYDVFNDI---KNKDVVS 383

Query: 421 WAALLSSCRLHDDVEMANIAANEIFK 446
           W A+L    +H       + A E+FK
Sbjct: 384 WNAMLQGLAMHGH----GVKALELFK 405



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 120/267 (44%), Gaps = 20/267 (7%)

Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
           N  + +HAQILK ++  D  +   L+ ++    +   A   F+ +   NV    +MI   
Sbjct: 34  NQVKQLHAQILKSNLHVDLFVVPKLISAFSLCRQMLLATNAFNQVQYPNVHLYNTMIRAH 93

Query: 228 MSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVFFED 283
                   A   F   +++D    +     + + + T    L     VH Q+ K  F  D
Sbjct: 94  SHNSQPSQAFATFF-AMQRDGHYADNFTFPFLLKVCTGNVWLPVIESVHAQIEKFGFMSD 152

Query: 284 VKLGSALVDMYAKCGK--IDDARRVFDHM-QQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
           V + ++L+D Y+KCG   I  A+++F  M  +++V +W SMI G  K G   +A ++F  
Sbjct: 153 VFVPNSLIDSYSKCGSCGISAAKKLFVSMGARRDVVSWNSMISGLAKGGLYEEARKVFDE 212

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVDLLGRA 399
           M E     + +++   L      G +D   ++F+ M ER+      +  ++ MV    +A
Sbjct: 213 MPE----KDGISWNTMLDGYVKVGKMDDAFKLFDEMPERN------VVSWSTMVLGYCKA 262

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLS 426
           G +E A     +MP K N   W  ++S
Sbjct: 263 GDMEMARMLFDKMPVK-NLVSWTIIVS 288


>gi|449482345|ref|XP_004156253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g11460-like [Cucumis sativus]
          Length = 614

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 149/455 (32%), Positives = 244/455 (53%), Gaps = 13/455 (2%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           A + P AL+       P  G + H  ITK G      +   L+ ++ K   +  A ++F+
Sbjct: 40  AFTFPFALKSCAALSLPILGSQFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFE 99

Query: 105 E-LPQRTLSA-YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           E    R L+  YN +++GY+ N +  +++ L R++   G   +  T   ++ A   C S 
Sbjct: 100 ENFHSRKLTVCYNALVSGYVSNSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPA---CVS- 155

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
            P+   LG  +H   LK    +D  +    +  Y+K G  +YA+ +FD M  K +I   +
Sbjct: 156 -PINLELGSSLHCSTLKYGFDSDVSVVNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNA 214

Query: 223 MISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKN 278
           M+SG+   G   +  E++R      V  D V    ++   + ++       EV  ++  +
Sbjct: 215 MVSGYAQNGLATNVLELYRNMDMNGVHPDPVTLVGVLSSCA-NLGAQSVGHEVEFKMQAS 273

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
            F  +  L +AL++MYA+CG +  A+ VFD M ++ + +WT++I GYG +G+   A++LF
Sbjct: 274 GFTSNPFLNNALINMYARCGNLTKAQAVFDGMPERTLVSWTAIIGGYGMHGHGEIAVQLF 333

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398
             M    ++P+   F+  LSAC HAGL D+G E F+ M+R+Y ++P  EHY+CMVDLLGR
Sbjct: 334 KEMIRSGIEPDGTAFVCVLSACSHAGLTDQGLEYFKMMKRNYQLEPGPEHYSCMVDLLGR 393

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVA 458
           AG L++A   +  MP KP+  VW ALL +C++H +VE+A +A   + +L   +  G YV 
Sbjct: 394 AGRLKEAQTLIESMPIKPDGAVWGALLGACKIHKNVELAELAFERVIELEP-ENIGYYVL 452

Query: 459 LSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           LSN  + A     V  +R  MK + + KD GCS+V
Sbjct: 453 LSNIYSNANNSKGVLRIRIMMKEKKLKKDPGCSYV 487



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 103/375 (27%), Positives = 179/375 (47%), Gaps = 14/375 (3%)

Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR 171
           + +N  +    K  Q  ++LSL  +++  G+RP+ +TF   LK  +C   ++P+   LG 
Sbjct: 6   TPWNTQLRELAKRCQFLQALSLYPQMLRHGDRPNAFTFPFALK--SCAALSLPI---LGS 60

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE--KNVICSTSMISGFMS 229
             H QI K     +  + T L+  Y KG     AR VF+      K  +C  +++SG++S
Sbjct: 61  QFHGQITKVGCVFEPFVQTGLISMYCKGSLVDNARKVFEENFHSRKLTVCYNALVSGYVS 120

Query: 230 QGFVEDAEEIFRKTVEKDIVVYNAMIEGY---SISIETARKALEVHCQLIKNVFFEDVKL 286
                DA  +FR+  E+ + V +  + G     +S         +HC  +K  F  DV +
Sbjct: 121 NSKCSDAVLLFRQMNEEGVPVNSVTLLGLIPACVSPINLELGSSLHCSTLKYGFDSDVSV 180

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
            +  + MY KCG ++ A+++FD M  K + +W +M+ GY +NG     LEL+  M    V
Sbjct: 181 VNCFITMYMKCGSVNYAQKLFDEMPVKGLISWNAMVSGYAQNGLATNVLELYRNMDMNGV 240

Query: 347 QPNYVTFLGALSACGHAGLVDKGREI-FESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
            P+ VT +G LS+C + G    G E+ F+     ++  P + +   ++++  R G+L +A
Sbjct: 241 HPDPVTLVGVLSSCANLGAQSVGHEVEFKMQASGFTSNPFLNN--ALINMYARCGNLTKA 298

Query: 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465
                 MPE+     W A++    +H   E+A     E+ +        A+V + +  + 
Sbjct: 299 QAVFDGMPERTLVS-WTAIIGGYGMHGHGEIAVQLFKEMIRSGIEPDGTAFVCVLSACSH 357

Query: 466 AGKWDSVTELREKMK 480
           AG  D   E  + MK
Sbjct: 358 AGLTDQGLEYFKMMK 372


>gi|302142753|emb|CBI19956.3| unnamed protein product [Vitis vinifera]
          Length = 446

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 152/454 (33%), Positives = 237/454 (52%), Gaps = 63/454 (13%)

Query: 82  ISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL-----VRK 136
           I   L+ ++ KCG +  + ++FD +P+R    +N MI GYL NG  + ++ L     +R 
Sbjct: 2   IGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIRT 61

Query: 137 LVSSGERPDGYTFSMILKASTCCRSNVPLP-RNLGRMVHAQILKCDVKADDVLYTALVDS 195
            V+  E  DG+  S   + +     +VP   RN+                 V +T +VD 
Sbjct: 62  AVTWIEMIDGFARSGDTETARRFFDDVPSELRNV-----------------VTWTVMVDG 104

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMI 255
           Y +  +   AR VF+ M ++N    +SMISG+  +G V++A  IF +   +++V +N++I
Sbjct: 105 YARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIPVRNLVNWNSLI 164

Query: 256 EGYSISIETARKALEVHCQLIKNVFFED-------------------------------V 284
            GY+ +   + +ALE   ++    F  D                               +
Sbjct: 165 SGYAQN-GFSEEALEAFGKMQAEGFEPDEVTIASVLSACSQLGLLDAGKKIHHMMNHKGI 223

Query: 285 KLG----SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
           KL     + LVDMYAKCG + +AR +F+ M  +N   W SMI G+  +G   +ALE F  
Sbjct: 224 KLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAIHGQSKEALEFFGR 283

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           M++    P+ +TFL  LSAC H G V+ G EIF  ME+ Y +   ++HY C++DLLGRAG
Sbjct: 284 MEDSHEGPDEITFLSVLSACAHGGFVNAGLEIFSRMEK-YGLTTGIKHYGCLIDLLGRAG 342

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA---YV 457
            +++A   +  MP KPN  VW ALL +CR+H D+EMA+    EI K+++N   G    YV
Sbjct: 343 RIKEAYDLIKRMPVKPNDVVWGALLGACRVHLDMEMADRVVEEIVKVDSNISSGCDSHYV 402

Query: 458 ALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
            LSN  AA+ +W+   ++R +M  +G  K +GCS
Sbjct: 403 LLSNIYAASDRWEKAEKMRMEMANKGFQKTSGCS 436



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 67/142 (47%), Gaps = 5/142 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G KIH  +   G+K N  +   L+ ++ KCG L  A  +F+ +  R  + +N MI+G+  
Sbjct: 211 GKKIHHMMNHKGIKLNQFVLNGLVDMYAKCGDLANARLIFEGMAHRNRACWNSMISGFAI 270

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +GQ +E+L    ++  S E PD  TF  +L  S C         N G  + +++ K  + 
Sbjct: 271 HGQSKEALEFFGRMEDSHEGPDEITFLSVL--SACAHGGFV---NAGLEIFSRMEKYGLT 325

Query: 184 ADDVLYTALVDSYVKGGKTSYA 205
                Y  L+D   + G+   A
Sbjct: 326 TGIKHYGCLIDLLGRAGRIKEA 347


>gi|357165485|ref|XP_003580399.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Brachypodium distachyon]
          Length = 886

 Score =  253 bits (647), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 143/492 (29%), Positives = 261/492 (53%), Gaps = 56/492 (11%)

Query: 40  SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYA 99
           ++ LTA +  S+L+         +G ++H  + +     +  ++  ++ L+ KCG  K A
Sbjct: 295 TSSLTACARLSSLE---------WGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEA 345

Query: 100 GQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCC 159
            ++F  L  R   ++  +I G+L+ G   ES+ L  ++ +     D +  + ++  S CC
Sbjct: 346 KRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLI--SGCC 403

Query: 160 RSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVIC 219
            +   +   LG  +H+  LK       V+  +L+  Y K G    A ++F+ M E++++ 
Sbjct: 404 NT---MDICLGSQLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVS 460

Query: 220 STSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLI--- 276
            T MI+ +   G +  A E F     ++++ +NAM+  Y I        L+++  ++   
Sbjct: 461 WTGMITAYSQVGNIAKAREFFDDMSTRNVITWNAMLGAY-IQHGAEEDGLKMYSDMLTEK 519

Query: 277 -------------------------KNVFFEDVKLG--------SALVDMYAKCGKIDDA 303
                                      +    VK+G        +A++ MY+KCG+I +A
Sbjct: 520 DVIPDWVTYVTLFRGCADIGANKLGDQIIGHTVKVGLILDTSVVNAVITMYSKCGRISEA 579

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
           R+ FD + +K++ +W +MI GY ++G   QA+E+F  +     +P+Y++++  LS C H+
Sbjct: 580 RKAFDFLSRKDLVSWNAMITGYSQHGMGKQAIEIFDDILNKGAKPDYISYVAVLSGCSHS 639

Query: 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA 423
           GLV++G+  F+ M+RD+++ P +EH++CMVDLLGRAG L +A   + EMP KP ++VW A
Sbjct: 640 GLVEEGKFYFDMMKRDHNISPGLEHFSCMVDLLGRAGHLIEAKNLIDEMPMKPTAEVWGA 699

Query: 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGA--YVALSNTLAAAGKWDSVTELREKMKL 481
           LLS+C+ H + ++A +AA  +F L   D PG+  Y+ L+   A AGK D   ++R+ M+ 
Sbjct: 700 LLSACKTHGNNDLAELAAKHLFDL---DSPGSGGYMLLAKMYADAGKSDDSAQVRKLMRD 756

Query: 482 RGVLKDTGCSWV 493
           +G+ K  G SW+
Sbjct: 757 KGIKKSPGYSWM 768



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/320 (25%), Positives = 154/320 (48%), Gaps = 42/320 (13%)

Query: 77  KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRK 136
           +PN      ++  + K G+L  A ++F  +P R ++++N +++GY ++GQ   +L +   
Sbjct: 89  EPNVITHNIMMNGYAKLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVS 148

Query: 137 LVSSGER-PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDS 195
           +  +G+  P+ +TF  ++K+      +    + LG +      K D + D  + TALVD 
Sbjct: 149 MRQTGDSLPNAFTFGCVMKSCGALGWHEVALQLLGLLS-----KFDSQDDPDVQTALVDM 203

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMI 255
            V+ G   +A   F  +    +IC  SM+ G+     V+ A EIF+   E+D+V +N +I
Sbjct: 204 LVRCGAMDFASKQFSRIKNPTIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVI 263

Query: 256 EGYSISIETARKAL-----------------------------------EVHCQLIKNVF 280
              S S    R+AL                                   ++H Q+I+N+ 
Sbjct: 264 SALSKS-GRVREALDMVVDMHGKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNLP 322

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             D  + SA+V++YAKCG   +A+RVF  ++ +N  +WT +I G+ + G  ++++ELF  
Sbjct: 323 HIDPYVASAMVELYAKCGCFKEAKRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQ 382

Query: 341 MQECCVQPNYVTFLGALSAC 360
           M+   +  +       +S C
Sbjct: 383 MRAELMAVDQFALATLISGC 402



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 79/311 (25%), Positives = 155/311 (49%), Gaps = 14/311 (4%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           +L+ + K   + +A ++F  +P+R + ++N +I+   K+G+V E+L +V  +   G RPD
Sbjct: 231 MLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMHGKGVRPD 290

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
             T++  L A  C R +       G+ +H Q+++     D  + +A+V+ Y K G    A
Sbjct: 291 STTYTSSLTA--CARLS---SLEWGKQLHVQVIRNLPHIDPYVASAMVELYAKCGCFKEA 345

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSIS 261
           + VF  + ++N +  T +I GF+  G   ++ E+F +     +  D      +I G   +
Sbjct: 346 KRVFSSLRDRNSVSWTVLIGGFLQYGCFSESVELFNQMRAELMAVDQFALATLISGCCNT 405

Query: 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
           ++    + ++H   +K+     V + ++L+ MYAKCG + +A  +F+ M ++++ +WT M
Sbjct: 406 MDICLGS-QLHSLCLKSGHTRAVVVSNSLISMYAKCGNLQNAELIFNFMAERDIVSWTGM 464

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
           I  Y + GN  +A E F  M       N +T+   L A    G  + G +++  M  +  
Sbjct: 465 ITAYSQVGNIAKAREFFDDMS----TRNVITWNAMLGAYIQHGAEEDGLKMYSDMLTEKD 520

Query: 382 MKPKMEHYACM 392
           + P    Y  +
Sbjct: 521 VIPDWVTYVTL 531



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 136/325 (41%), Gaps = 73/325 (22%)

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR-IVFDMMLEKNVICSTSMISGFM 228
            R +H++++   + +   L   L+ +Y+  G  S AR ++ D + E NVI    M++G+ 
Sbjct: 44  ARTLHSRLINVGLASVVFLQNTLLHAYLSCGALSDARNLLRDEITEPNVITHNIMMNGYA 103

Query: 229 SQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS------------ISIETARKAL------- 269
             G + DA E+F +   +D+  +N ++ GY             +S+     +L       
Sbjct: 104 KLGSLSDAVELFGRMPTRDVASWNTIMSGYYQSGQFLNALDIFVSMRQTGDSLPNAFTFG 163

Query: 270 ------------EVHCQLI----KNVFFEDVKLGSALVDMYAKCGK-------------- 299
                       EV  QL+    K    +D  + +ALVDM  +CG               
Sbjct: 164 CVMKSCGALGWHEVALQLLGLLSKFDSQDDPDVQTALVDMLVRCGAMDFASKQFSRIKNP 223

Query: 300 -----------------IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
                            +D A  +F  M +++V +W  +I    K+G   +AL++   M 
Sbjct: 224 TIICRNSMLVGYAKSHGVDHALEIFKSMPERDVVSWNMVISALSKSGRVREALDMVVDMH 283

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY--ACMVDLLGRAG 400
              V+P+  T+  +L+AC     ++ G+++   + R+    P ++ Y  + MV+L  + G
Sbjct: 284 GKGVRPDSTTYTSSLTACARLSSLEWGKQLHVQVIRNL---PHIDPYVASAMVELYAKCG 340

Query: 401 SLEQALKFVLEMPEKPNSDVWAALL 425
             ++A K V       NS  W  L+
Sbjct: 341 CFKEA-KRVFSSLRDRNSVSWTVLI 364


>gi|225464414|ref|XP_002269452.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g04780-like [Vitis vinifera]
          Length = 594

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 143/453 (31%), Positives = 249/453 (54%), Gaps = 17/453 (3%)

Query: 50  SALQHYINSDT----PFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
           S LQH + S         G+  HA I + G++ +T  S  L+ ++ KCG ++ A ++FDE
Sbjct: 21  SELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDE 80

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL--KASTCCRSNV 163
           +P R+L ++N M+  + +NG  E++L L  ++   G     +T S ++   A+ CC    
Sbjct: 81  MPVRSLVSWNTMVGSHTQNGDCEKALVLFMQMQKEGTSCSEFTVSSVVCACAAKCCVFEC 140

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
                  + +H   LK  + ++  + TAL+D Y K G    A +VF+ M E++ +  +SM
Sbjct: 141 -------KQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDANLVFECMPERSDVTWSSM 193

Query: 224 ISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE---VHCQLIKNVF 280
           ++G++     E+A  +F +     +      I     +       +E   V     K   
Sbjct: 194 VAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVSCKTGI 253

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             ++ + S+L+DMYAKCG I++A  VF  +++KNV  W +++ G+ ++    +A+  F  
Sbjct: 254 GSNIFVISSLIDMYAKCGIIEEAYTVFSSVEEKNVVLWNAILSGFSRHVRSLEAMIYFEK 313

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           MQ+  + PN +T++  LSAC H GLV+KGR+ F+ M R +++ P + HY+CMVD+LGRAG
Sbjct: 314 MQQMGICPNDITYISVLSACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAG 373

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
            L +A  F+  MP    + +W +LL+SCR++ ++E+A +AA  +F++  ++  G +V LS
Sbjct: 374 LLHEAKDFIDRMPFDATASMWGSLLASCRIYRNLELAEVAAKHLFEIEPHN-AGNHVLLS 432

Query: 461 NTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           N  AA  +W+ V   R  +K     K+ G SW+
Sbjct: 433 NIYAANDRWEEVARARNLLKESKAKKERGKSWI 465


>gi|357117491|ref|XP_003560501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Brachypodium distachyon]
          Length = 652

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 141/345 (40%), Positives = 198/345 (57%), Gaps = 38/345 (11%)

Query: 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV 250
           +L+ +Y+  G    AR VFD M+ K+VIC TS++  +     +  AEE+F +   KD+V 
Sbjct: 186 SLIGAYIACGDVGAARKVFDEMVVKDVICWTSIVVAYSRSRDMGSAEEVFGQCPVKDMVA 245

Query: 251 YNAMIEGYSISIETARKALEVHCQLIK--------------------------------- 277
           + AM+ GY+ +     KALEV  ++                                   
Sbjct: 246 WTAMVTGYAQN-AMPMKALEVFDRMTALGIGIDEVSLTGAISACAQLGAVKRAAWVQEIA 304

Query: 278 --NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
             N F  +V +GS LVDMYAKCG ID+A +VFD MQ+KNV+T++SM+ G   +G   +A+
Sbjct: 305 EMNGFGMNVVVGSGLVDMYAKCGLIDEACKVFDGMQEKNVYTYSSMVVGLASHGRAREAI 364

Query: 336 ELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394
            LF  M++   V PN+VTF+G L+AC HAG+V  GR  F  M+  Y + P  +HY CMVD
Sbjct: 365 ALFKDMVRRADVAPNHVTFIGVLTACSHAGMVTDGRYYFAQMKDKYGILPSADHYTCMVD 424

Query: 395 LLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG 454
           LLGRAG +++AL  V  M  +P+  VW ALL +CR+H   E+A +AA  +FKL   +  G
Sbjct: 425 LLGRAGLVDEALDLVRSMTVEPHGGVWGALLGACRIHGKTEVAKVAAEHLFKLEP-EGIG 483

Query: 455 AYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
            YV LSNTLAAAGKWD V+++R+ M+ R + K    SW     GL
Sbjct: 484 NYVLLSNTLAAAGKWDEVSKVRKVMRSRRLKKVPAVSWFEGRDGL 528



 Score = 55.5 bits (132), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 75/364 (20%), Positives = 139/364 (38%), Gaps = 89/364 (24%)

Query: 86  LLILHLKCGALKYAGQMFDEL-------------------------------PQRTLSAY 114
           L+  ++ CG +  A ++FDE+                               P + + A+
Sbjct: 187 LIGAYIACGDVGAARKVFDEMVVKDVICWTSIVVAYSRSRDMGSAEEVFGQCPVKDMVAW 246

Query: 115 NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH 174
             M+ GY +N    ++L +  ++ + G   D  + +  + A             LG +  
Sbjct: 247 TAMVTGYAQNAMPMKALEVFDRMTALGIGIDEVSLTGAISACA----------QLGAVKR 296

Query: 175 AQILKCDVKADD-----VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           A  ++   + +      V+ + LVD Y K G    A  VFD M EKNV   +SM+ G  S
Sbjct: 297 AAWVQEIAEMNGFGMNVVVGSGLVDMYAKCGLIDEACKVFDGMQEKNVYTYSSMVVGLAS 356

Query: 230 QGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSA 289
            G   +A  +F+  V +  V  N                   H   I             
Sbjct: 357 HGRAREAIALFKDMVRRADVAPN-------------------HVTFI------------G 385

Query: 290 LVDMYAKCGKIDDARRVFDHMQQK-----NVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
           ++   +  G + D R  F  M+ K     +   +T M+D  G+ G  ++AL+L   ++  
Sbjct: 386 VLTACSHAGMVTDGRYYFAQMKDKYGILPSADHYTCMVDLLGRAGLVDEALDL---VRSM 442

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK-MEHYACMVDLLGRAGSLE 403
            V+P+   +   L AC   G  +  +   E +   + ++P+ + +Y  + + L  AG  +
Sbjct: 443 TVEPHGGVWGALLGACRIHGKTEVAKVAAEHL---FKLEPEGIGNYVLLSNTLAAAGKWD 499

Query: 404 QALK 407
           +  K
Sbjct: 500 EVSK 503



 Score = 42.7 bits (99), Expect = 0.46,   Method: Compositional matrix adjust.
 Identities = 58/279 (20%), Positives = 105/279 (37%), Gaps = 66/279 (23%)

Query: 75  GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV 134
           G   N  +   L+ ++ KCG +  A ++FD + ++ +  Y+ M+ G   +G+  E+++L 
Sbjct: 308 GFGMNVVVGSGLVDMYAKCGLIDEACKVFDGMQEKNVYTYSSMVVGLASHGRAREAIALF 367

Query: 135 RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVD 194
           + +V                                        + DV  + V +  ++ 
Sbjct: 368 KDMVR---------------------------------------RADVAPNHVTFIGVLT 388

Query: 195 SYVKGGKTSYARIVFDMMLEKNVICS-----TSMISGFMSQGFVEDAEEIFRK-TVEKDI 248
           +    G  +  R  F  M +K  I       T M+      G V++A ++ R  TVE   
Sbjct: 389 ACSHAGMVTDGRYYFAQMKDKYGILPSADHYTCMVDLLGRAGLVDEALDLVRSMTVEPHG 448

Query: 249 VVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFEDVKLGS--ALVDMYAKCGKIDDAR 304
            V+ A++    I    E A+ A E    L K    E   +G+   L +  A  GK D+  
Sbjct: 449 GVWGALLGACRIHGKTEVAKVAAE---HLFK---LEPEGIGNYVLLSNTLAAAGKWDEVS 502

Query: 305 RVFDHMQQKNV-----FTWTSMIDGY------GKNGNPN 332
           +V   M+ + +      +W    DG       G N +P 
Sbjct: 503 KVRKVMRSRRLKKVPAVSWFEGRDGLVHQFFAGDNSHPR 541


>gi|15228653|ref|NP_189568.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273910|sp|Q9LS72.1|PP261_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g29230
 gi|9293916|dbj|BAB01819.1| unnamed protein product [Arabidopsis thaliana]
 gi|332644032|gb|AEE77553.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 600

 Score =  253 bits (646), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 145/441 (32%), Positives = 252/441 (57%), Gaps = 23/441 (5%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGAL--KYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           +H HI K G+  +  +   L+  + +CG L  + A ++F+++ +R   ++N M+ G +K 
Sbjct: 139 MHNHIEKLGLSSDIYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKA 198

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA-QILKCDVK 183
           G++ ++    R+L     + D  +++ +L     CR           M  A ++ +   +
Sbjct: 199 GELRDA----RRLFDEMPQRDLISWNTMLDGYARCRE----------MSKAFELFEKMPE 244

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMML--EKNVICSTSMISGFMSQGFVEDAEEIFR 241
            + V ++ +V  Y K G    AR++FD M    KNV+  T +I+G+  +G +++A+ +  
Sbjct: 245 RNTVSWSTMVMGYSKAGDMEMARVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVD 304

Query: 242 KTVEKDIVV-YNAMIEGYSISIETARKAL--EVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
           + V   +     A+I   +   E+   +L   +H  L ++    +  + +AL+DMYAKCG
Sbjct: 305 QMVASGLKFDAAAVISILAACTESGLLSLGMRIHSILKRSNLGSNAYVLNALLDMYAKCG 364

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            +  A  VF+ + +K++ +W +M+ G G +G+  +A+ELF  M+   ++P+ VTF+  L 
Sbjct: 365 NLKKAFDVFNDIPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPDKVTFIAVLC 424

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           +C HAGL+D+G + F SME+ Y + P++EHY C+VDLLGR G L++A+K V  MP +PN 
Sbjct: 425 SCNHAGLIDEGIDYFYSMEKVYDLVPQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNV 484

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            +W ALL +CR+H++V++A    + + KL+  D PG Y  LSN  AAA  W+ V ++R K
Sbjct: 485 VIWGALLGACRMHNEVDIAKEVLDNLVKLDPCD-PGNYSLLSNIYAAAEDWEGVADIRSK 543

Query: 479 MKLRGVLKDTGCSWVGTESGL 499
           MK  GV K +G S V  E G+
Sbjct: 544 MKSMGVEKPSGASSVELEDGI 564



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 181/370 (48%), Gaps = 16/370 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++HA I +  +  + +I+ KL+     C     A ++F+++ +  +   N +I  + +N 
Sbjct: 37  QLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAHAQNS 96

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           Q  ++  +  ++   G   D +T+  +LKA   C     LP  + +M+H  I K  + +D
Sbjct: 97  QPYQAFFVFSEMQRFGLFADNFTYPFLLKA---CSGQSWLP--VVKMMHNHIEKLGLSSD 151

Query: 186 DVLYTALVDSYVKGGKTSY--ARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
             +  AL+D Y + G      A  +F+ M E++ +   SM+ G +  G + DA  +F + 
Sbjct: 152 IYVPNALIDCYSRCGGLGVRDAMKLFEKMSERDTVSWNSMLGGLVKAGELRDARRLFDEM 211

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
            ++D++ +N M++GY+   E + KA E    L + +   +    S +V  Y+K G ++ A
Sbjct: 212 PQRDLISWNTMLDGYARCREMS-KAFE----LFEKMPERNTVSWSTMVMGYSKAGDMEMA 266

Query: 304 RRVFDHM--QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           R +FD M    KNV TWT +I GY + G   +A  L   M    ++ +    +  L+AC 
Sbjct: 267 RVMFDKMPLPAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAAAVISILAACT 326

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
            +GL+  G  I   ++R  ++         ++D+  + G+L++A     ++P+K +   W
Sbjct: 327 ESGLLSLGMRIHSILKRS-NLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKK-DLVSW 384

Query: 422 AALLSSCRLH 431
             +L    +H
Sbjct: 385 NTMLHGLGVH 394



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 91/185 (49%), Gaps = 5/185 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH+ + ++ +  N  +   LL ++ KCG LK A  +F+++P++ L ++N M+ G   
Sbjct: 334 GMRIHSILKRSNLGSNAYVLNALLDMYAKCGNLKKAFDVFNDIPKKDLVSWNTMLHGLGV 393

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G  +E++ L  ++   G RPD  TF  +L    C  ++  L        ++     D+ 
Sbjct: 394 HGHGKEAIELFSRMRREGIRPDKVTFIAVL----CSCNHAGLIDEGIDYFYSMEKVYDLV 449

Query: 184 ADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
                Y  LVD   + G+   A ++V  M +E NV+   +++        V+ A+E+   
Sbjct: 450 PQVEHYGCLVDLLGRVGRLKEAIKVVQTMPMEPNVVIWGALLGACRMHNEVDIAKEVLDN 509

Query: 243 TVEKD 247
            V+ D
Sbjct: 510 LVKLD 514



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 91/400 (22%), Positives = 160/400 (40%), Gaps = 97/400 (24%)

Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
           N  + +HAQI++ ++  D  +   L+ +     +T+ A  VF+ + E NV    S+I   
Sbjct: 33  NQVKQLHAQIIRRNLHEDLHIAPKLISALSLCRQTNLAVRVFNQVQEPNVHLCNSLIRAH 92

Query: 228 MS-----QGFVEDAE-----------------------------EIFRKTVEK-----DI 248
                  Q F   +E                             ++    +EK     DI
Sbjct: 93  AQNSQPYQAFFVFSEMQRFGLFADNFTYPFLLKACSGQSWLPVVKMMHNHIEKLGLSSDI 152

Query: 249 VVYNAMIEGYS----ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDAR 304
            V NA+I+ YS    + +  A K  E   +        D    ++++    K G++ DAR
Sbjct: 153 YVPNALIDCYSRCGGLGVRDAMKLFEKMSE-------RDTVSWNSMLGGLVKAGELRDAR 205

Query: 305 RVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG 364
           R+FD M Q+++ +W +M+DGY +    ++A ELF  M E     N V++   +     AG
Sbjct: 206 RLFDEMPQRDLISWNTMLDGYARCREMSKAFELFEKMPE----RNTVSWSTMVMGYSKAG 261

Query: 365 LVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA--GSLEQALKFVLEMPE---KPNSD 419
            ++  R +F+ M       P        + + G A  G L++A + V +M     K ++ 
Sbjct: 262 DMEMARVMFDKMPL-----PAKNVVTWTIIIAGYAEKGLLKEADRLVDQMVASGLKFDAA 316

Query: 420 VWAALLSSC----------RLHDDVEMANIAANEIFKLNA------------------ND 451
              ++L++C          R+H  ++ +N+ +N  + LNA                  ND
Sbjct: 317 AVISILAACTESGLLSLGMRIHSILKRSNLGSNA-YVLNALLDMYAKCGNLKKAFDVFND 375

Query: 452 RPGAYVALSNT----LAAAGKWDSVTELREKMKLRGVLKD 487
            P   +   NT    L   G      EL  +M+  G+  D
Sbjct: 376 IPKKDLVSWNTMLHGLGVHGHGKEAIELFSRMRREGIRPD 415


>gi|242096002|ref|XP_002438491.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
 gi|241916714|gb|EER89858.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
          Length = 794

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 155/477 (32%), Positives = 263/477 (55%), Gaps = 39/477 (8%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTG-VKPNTNISIKLLILHLKCGALKYAGQMF 103
           A++LP+  Q  + S     G ++HA++ K   +  N+ ++  L+ ++     +  A  +F
Sbjct: 273 ASALPACSQLEMLS----LGREMHAYVLKDADLAANSFVASALVDMYASHERVGAARLVF 328

Query: 104 DELP--QRTLSAYNYMIAGYLKNGQVEESLSLVRKL-VSSGERPDGYTFSMILKASTCCR 160
           D +P  +R L  +N MI GY + G  E++L L  ++   +G  P   T + +L   +C R
Sbjct: 329 DMVPAGERQLGLWNAMICGYAQAGLDEDALELFARMETEAGVVPSETTIAGVLP--SCAR 386

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           S     +     VH  ++K  +  +  +  AL+D Y + G    AR +F  +  ++V+  
Sbjct: 387 SETFAGKE---AVHGYVVKRGMADNPFVQNALMDLYARLGDMDAARWIFATIEPRDVVSW 443

Query: 221 TSMISGFMSQGFVEDAEEIFRKT-----------------VEKDIVVYN-----AMIEGY 258
            ++I+G + QG + DA ++ R+                   +++ VV N      ++ G 
Sbjct: 444 NTLITGCVVQGHIRDAFQLVREMQQQGRFTDAATEDGIAGADEEPVVPNNITLMTLLPGC 503

Query: 259 SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTW 318
           ++    AR   E+H   +++    DV +GSALVDMYAKCG +  +R VFD + ++NV TW
Sbjct: 504 AMLAAPARGK-EIHGYAVRHALDSDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNVITW 562

Query: 319 TSMIDGYGKNGNPNQALELF-CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377
             +I  YG +G  ++A+ LF  M+     +PN VTF+ AL+AC H+G+VD+G E+F SM+
Sbjct: 563 NVLIMAYGMHGLGDEAIALFDRMVASDEAKPNEVTFIAALAACSHSGMVDRGLEMFRSMK 622

Query: 378 RDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM-PEKPNSDVWAALLSSCRLHDDVEM 436
           R++ ++P  + +AC VD+LGRAG L++A + +  M P +     W++ L +CRLH +V +
Sbjct: 623 RNHGVEPTPDLHACAVDILGRAGRLDEAYRIISSMEPGEQQVSAWSSFLGACRLHRNVAL 682

Query: 437 ANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             IAA  +F+L   D    YV L N  +AAG W+  +E+R +M+ RGV K+ GCSW+
Sbjct: 683 GEIAAERLFELEP-DEASHYVLLCNIYSAAGLWEKSSEVRSRMRQRGVSKEPGCSWI 738



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 94/368 (25%), Positives = 164/368 (44%), Gaps = 26/368 (7%)

Query: 78  PNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL 137
           P   +S  LL  + +CG L  A  +FD +P R    +N +IA      +   +L  +R +
Sbjct: 92  PTPAVSNALLTAYARCGDLTAALALFDAMPSRDAVTFNSLIAALCLFRRWLPALDALRDM 151

Query: 138 VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD--VLYTALVDS 195
           +  G     +T   +L A +    ++     LGR  HA  LK      D    + AL+  
Sbjct: 152 LLEGHPLTSFTLVSVLLACSHLAEDL----RLGREAHAFALKNGFLDGDERFAFNALLSM 207

Query: 196 YVKGGKTSYARIVFDMMLEKN-----VICSTSMISGFMSQGFVEDAEEIF----RKTVEK 246
           Y + G    A+ +F  +   +     V+   +M+S  +  G   +A E+      + V  
Sbjct: 208 YARLGLVDDAQTLFGSVGATDVPGGGVVTWNTMVSLLVQSGRCGEAIEVLYDMVARGVRP 267

Query: 247 DIVVYNAMIEGYSISIETARKALEVHCQLIKNV-FFEDVKLGSALVDMYAKCGKIDDARR 305
           D V + + +   S  +E      E+H  ++K+     +  + SALVDMYA   ++  AR 
Sbjct: 268 DGVTFASALPACS-QLEMLSLGREMHAYVLKDADLAANSFVASALVDMYASHERVGAARL 326

Query: 306 VFDHMQ--QKNVFTWTSMIDGYGKNGNPNQALELFCMMQ-ECCVQPNYVTFLGALSACGH 362
           VFD +   ++ +  W +MI GY + G    ALELF  M+ E  V P+  T  G L +C  
Sbjct: 327 VFDMVPAGERQLGLWNAMICGYAQAGLDEDALELFARMETEAGVVPSETTIAGVLPSCAR 386

Query: 363 AGLVDKGREIFES--MERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
           +     G+E      ++R  +  P +++   ++DL  R G ++ A +++    E  +   
Sbjct: 387 SETF-AGKEAVHGYVVKRGMADNPFVQN--ALMDLYARLGDMDAA-RWIFATIEPRDVVS 442

Query: 421 WAALLSSC 428
           W  L++ C
Sbjct: 443 WNTLITGC 450



 Score = 75.1 bits (183), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 112/248 (45%), Gaps = 33/248 (13%)

Query: 171 RMVHAQILKCDV--KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM 228
           R +H   L+ D+       +  AL+ +Y + G  + A  +FD M  ++ +   S+I+   
Sbjct: 77  RSIHGAALRHDLLDGPTPAVSNALLTAYARCGDLTAALALFDAMPSRDAVTFNSLIAALC 136

Query: 229 SQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS--------------IETARKALEVHCQ 274
                     +FR+ +     + + ++EG+ ++               E  R   E H  
Sbjct: 137 ----------LFRRWLPALDALRDMLLEGHPLTSFTLVSVLLACSHLAEDLRLGREAHAF 186

Query: 275 LIKNVFFE-DVKLG-SALVDMYAKCGKIDDARRVFDHMQQKNV-----FTWTSMIDGYGK 327
            +KN F + D +   +AL+ MYA+ G +DDA+ +F  +   +V      TW +M+    +
Sbjct: 187 ALKNGFLDGDERFAFNALLSMYARLGLVDDAQTLFGSVGATDVPGGGVVTWNTMVSLLVQ 246

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           +G   +A+E+   M    V+P+ VTF  AL AC    ++  GRE+   + +D  +     
Sbjct: 247 SGRCGEAIEVLYDMVARGVRPDGVTFASALPACSQLEMLSLGREMHAYVLKDADLAANSF 306

Query: 388 HYACMVDL 395
             + +VD+
Sbjct: 307 VASALVDM 314


>gi|255578276|ref|XP_002530005.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530484|gb|EEF32367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 499

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 154/468 (32%), Positives = 242/468 (51%), Gaps = 40/468 (8%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHL--KCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           +IHAH   T +  ++ I  K+L        G L YA ++FD++PQ     YN +I GY K
Sbjct: 34  QIHAHSLLTDLHNHSVILGKMLRFAAVSPSGDLPYAQRLFDQMPQPNTFFYNTIIRGYAK 93

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLG-RMVHAQILK--- 179
           +      ++L  ++  +   PD +TF+ ++KA +        P  L    +H  + K   
Sbjct: 94  SSSPSYCVNLFNQMRQNHVDPDEFTFNFLIKARSRVHKVHNFPSTLECDEIHGAVFKYGF 153

Query: 180 CD----------------------------VKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           C                             V  D V ++ LV ++V+GG+   AR VFD 
Sbjct: 154 CSHLFVQNALINLYAVKGSPAAAWRVFNETVGVDVVSWSGLVLAHVRGGELELARQVFDD 213

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARK 267
           M EK+V+  T+M+SG+       +A E+F +     +  D V   ++I   + ++     
Sbjct: 214 MPEKDVVSWTAMVSGYSKANCSREALELFWEMSDAGIRPDEVTIVSVISACT-NLGDVET 272

Query: 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
            + VH  + +N F   V L +AL++MYAKCG +D A RVF++M++K++ TW SMI     
Sbjct: 273 GMNVHSYINENGFGWMVSLCNALINMYAKCGCVDRAWRVFNNMKRKSLITWNSMISACAN 332

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           +G    A ELF  M    + P+ +TFL  L A  H GLVD+G  +F+ MERDY ++  +E
Sbjct: 333 HGYAEDAFELFSCMLNSGIAPDGITFLALLIAYTHKGLVDEGYRLFQIMERDYGIEASIE 392

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           HY C+VD+LGRAG LE+A + ++ MP   N  VW ALL++CR++ DV M      ++ +L
Sbjct: 393 HYGCIVDMLGRAGRLEEAYELIVTMPIPSNDIVWGALLAACRIYGDVNMGERVVKKLLEL 452

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGT 495
              D  G Y+ L +   A+G+      +R+ M+  G +K+ G SWVG 
Sbjct: 453 KP-DEGGYYILLRDIYVASGRTAEANHIRQAMQESGAMKNPGYSWVGA 499



 Score = 62.0 bits (149), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 51/208 (24%), Positives = 103/208 (49%), Gaps = 12/208 (5%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           + +T  S+ SA  +  + +T   G+ +H++I + G     ++   L+ ++ KCG +  A 
Sbjct: 253 DEVTIVSVISACTNLGDVET---GMNVHSYINENGFGWMVSLCNALINMYAKCGCVDRAW 309

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           ++F+ + +++L  +N MI+    +G  E++  L   +++SG  PDG TF  +L A T   
Sbjct: 310 RVFNNMKRKSLITWNSMISACANHGYAEDAFELFSCMLNSGIAPDGITFLALLIAYT--- 366

Query: 161 SNVPLPRNLGRMVHAQILKCD--VKADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNV 217
            +  L     R+   QI++ D  ++A    Y  +VD   + G+   A  ++  M +  N 
Sbjct: 367 -HKGLVDEGYRLF--QIMERDYGIEASIEHYGCIVDMLGRAGRLEEAYELIVTMPIPSND 423

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKTVE 245
           I   ++++     G V   E + +K +E
Sbjct: 424 IVWGALLAACRIYGDVNMGERVVKKLLE 451


>gi|357461615|ref|XP_003601089.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490137|gb|AES71340.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 745

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 148/446 (33%), Positives = 254/446 (56%), Gaps = 16/446 (3%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           + PS L+    SD    G +IH +I K+G + +      L+ ++  C  L  A ++FD+ 
Sbjct: 238 TFPSVLKACGCSDELMLGREIHCYIIKSGFESSCYCISALIDMYSSCKLLSEATKIFDQY 297

Query: 107 PQ-----RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161
            +      +L+ +N M++G++ NG   E+LS++  +  SG R D YTFS++LK    C +
Sbjct: 298 FRNSSVSESLALWNSMLSGHVVNGDYVEALSMISHMHRSGVRFDFYTFSIVLKI---CMN 354

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
              L  +L   VH  ++    + D V+ + L+D Y K G  + A  +F+ + +K+V+  +
Sbjct: 355 FDNL--SLASQVHGFVITSGYELDCVVGSILIDIYAKQGSINNALRLFERLPDKDVVAWS 412

Query: 222 SMISGFMSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSISIETARKALEVHCQLIK 277
           S+I+G    G  + A  +F   +    + D  V + +++  S S+ + +   +VH   +K
Sbjct: 413 SLITGCARFGSDKLAFSLFMDMIHLGLQIDHFVISIVLKACS-SLASHQHGKQVHSLCLK 471

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
             +  +  + +AL+DMYAKCG I+DA  +F  + + +  +WTS+I G  +NG   +A+ L
Sbjct: 472 KGYESEGVVTTALIDMYAKCGDIEDALSLFGCLSEIDTMSWTSIIVGCAQNGRAEEAISL 531

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
              M E   +PN +T LG L+AC H+GLV++  ++F S+E ++ + P  EHY CMVD+LG
Sbjct: 532 LHKMIESGTKPNKITILGVLTACRHSGLVEEAWDVFNSIETNHGLIPCPEHYNCMVDILG 591

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457
           +AG  E+A+K + EMP KP+  +W++LL +C  + + ++ANI A  +   +  D    Y+
Sbjct: 592 QAGRFEEAVKLISEMPFKPDKTIWSSLLGACGTYKNRDLANIVAEHLLATSPED-VSVYI 650

Query: 458 ALSNTLAAAGKWDSVTELREKMKLRG 483
            LSN  AA G WDSV+++RE +K  G
Sbjct: 651 MLSNVYAALGMWDSVSKVRETVKKIG 676



 Score =  153 bits (386), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 113/406 (27%), Positives = 194/406 (47%), Gaps = 56/406 (13%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +H+HI K+G   +  I   ++ ++ KC ++  A  MFDE+P R + ++  M++    +  
Sbjct: 25  LHSHIIKSGFCNHIFILNNMISVYSKCSSIIDARNMFDEMPHRNIVSWTTMVSVLTNSSM 84

Query: 127 VEESLSLVRKLVSSG-ERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             E+LSL  +++ S  E+P+ + +S +LKA    R NV     LG+MVH  I +  +  D
Sbjct: 85  PHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVR-NV----ELGKMVHYHIFQAKLDVD 139

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
            VL  AL+D YVK G    A+ VF  +  KN     ++I G+  QG ++DA ++F K  E
Sbjct: 140 IVLMNALLDMYVKCGSLRDAQRVFCEIPCKNATSWNTLILGYAKQGLIDDAMKLFDKMPE 199

Query: 246 KDIVVYNAMIEGY-----------------------SISIETARKAL----------EVH 272
            DIV +N++I G                          +  +  KA           E+H
Sbjct: 200 PDIVSWNSIIAGLVDNASSRALRFVSMMHGKGLKMDEFTFPSVLKACGCSDELMLGREIH 259

Query: 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT-----WTSMIDGYGK 327
           C +IK+ F       SAL+DMY+ C  + +A ++FD   + +  +     W SM+ G+  
Sbjct: 260 CYIIKSGFESSCYCISALIDMYSSCKLLSEATKIFDQYFRNSSVSESLALWNSMLSGHVV 319

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSAC---GHAGLVDK--GREIFESMERDYSM 382
           NG+  +AL +   M    V+ ++ TF   L  C    +  L  +  G  I    E D  +
Sbjct: 320 NGDYVEALSMISHMHRSGVRFDFYTFSIVLKICMNFDNLSLASQVHGFVITSGYELDCVV 379

Query: 383 KPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
                  + ++D+  + GS+  AL+    +P+K +   W++L++ C
Sbjct: 380 G------SILIDIYAKQGSINNALRLFERLPDK-DVVAWSSLITGC 418



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 116/497 (23%), Positives = 211/497 (42%), Gaps = 89/497 (17%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H HI +  +  +  +   LL +++KCG+L+ A ++F E+P +  +++N +I GY K
Sbjct: 124 GKMVHYHIFQAKLDVDIVLMNALLDMYVKCGSLRDAQRVFCEIPCKNATSWNTLILGYAK 183

Query: 124 NGQVEESLSLVRKL-----VS-------------------------SGERPDGYTFSMIL 153
            G +++++ L  K+     VS                          G + D +TF  +L
Sbjct: 184 QGLIDDAMKLFDKMPEPDIVSWNSIIAGLVDNASSRALRFVSMMHGKGLKMDEFTFPSVL 243

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
           KA  C    +     LGR +H  I+K   ++     +AL+D Y      S A  +FD   
Sbjct: 244 KACGCSDELM-----LGREIHCYIIKSGFESSCYCISALIDMYSSCKLLSEATKIFDQYF 298

Query: 214 EKNVICST-----SMISGFMSQG-FVEDAEEI---FRKTVEKDIVVYNAMIEGYSISIET 264
             + +  +     SM+SG +  G +VE    I    R  V  D   ++ +++   ++ + 
Sbjct: 299 RNSSVSESLALWNSMLSGHVVNGDYVEALSMISHMHRSGVRFDFYTFSIVLK-ICMNFDN 357

Query: 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
              A +VH  +I + +  D  +GS L+D+YAK G I++A R+F+ +  K+V  W+S+I G
Sbjct: 358 LSLASQVHGFVITSGYELDCVVGSILIDIYAKQGSINNALRLFERLPDKDVVAWSSLITG 417

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE-SMERDYSMK 383
             + G+   A  LF  M    +Q ++      L AC        G+++    +++ Y  +
Sbjct: 418 CARFGSDKLAFSLFMDMIHLGLQIDHFVISIVLKACSSLASHQHGKQVHSLCLKKGYESE 477

Query: 384 PKMEHYACMVDLLGRAGSLEQALKF----------------------------------V 409
             +     ++D+  + G +E AL                                    +
Sbjct: 478 GVVT--TALIDMYAKCGDIEDALSLFGCLSEIDTMSWTSIIVGCAQNGRAEEAISLLHKM 535

Query: 410 LEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR----PGAYVALSNTLAA 465
           +E   KPN      +L++CR    VE A    N I     N      P  Y  + + L  
Sbjct: 536 IESGTKPNKITILGVLTACRHSGLVEEAWDVFNSI---ETNHGLIPCPEHYNCMVDILGQ 592

Query: 466 AGKWDSVTELREKMKLR 482
           AG+++   +L  +M  +
Sbjct: 593 AGRFEEAVKLISEMPFK 609



 Score = 82.8 bits (203), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/205 (27%), Positives = 100/205 (48%), Gaps = 15/205 (7%)

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
            + +H+ I+K        +   ++  Y K      AR +FD M  +N++  T+M+S   +
Sbjct: 22  AKSLHSHIIKSGFCNHIFILNNMISVYSKCSSIIDARNMFDEMPHRNIVSWTTMVSVLTN 81

Query: 230 QGFVEDAEEIFRKTVEKDI-----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDV 284
                +A  ++ + +E  I      +Y+A+++   + +        VH  + +     D+
Sbjct: 82  SSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGL-VRNVELGKMVHYHIFQAKLDVDI 140

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
            L +AL+DMY KCG + DA+RVF  +  KN  +W ++I GY K G  + A++LF  M E 
Sbjct: 141 VLMNALLDMYVKCGSLRDAQRVFCEIPCKNATSWNTLILGYAKQGLIDDAMKLFDKMPE- 199

Query: 345 CVQPNYVTFLGALSACGHAGLVDKG 369
              P+ V++   +     AGLVD  
Sbjct: 200 ---PDIVSWNSII-----AGLVDNA 216



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 50/174 (28%), Positives = 89/174 (51%), Gaps = 13/174 (7%)

Query: 258 YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT 317
           Y I   + + A  +H  +IK+ F   + + + ++ +Y+KC  I DAR +FD M  +N+ +
Sbjct: 12  YCIRFRSIKNAKSLHSHIIKSGFCNHIFILNNMISVYSKCSSIIDARNMFDEMPHRNIVS 71

Query: 318 WTSMIDGYGKNGNPNQALELFCMMQECCV-QPNYVTFLGALSACGHAGLVDKGR----EI 372
           WT+M+     +  P++AL L+  M E  + QPN   +   L ACG    V+ G+     I
Sbjct: 72  WTTMVSVLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNVELGKMVHYHI 131

Query: 373 FES-MERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
           F++ ++ D  +         ++D+  + GSL  A +   E+P K N+  W  L+
Sbjct: 132 FQAKLDVDIVLMNA------LLDMYVKCGSLRDAQRVFCEIPCK-NATSWNTLI 178


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 148/457 (32%), Positives = 249/457 (54%), Gaps = 14/457 (3%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           NP     L SAL+  +   +   G  IH    KT      ++   LL ++ KCG ++ A 
Sbjct: 248 NPFV---LTSALKAAVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAH 304

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
            +F+ +P   +  ++++I+ Y ++ Q E++  +  +++ S   P+ ++ S +L+A     
Sbjct: 305 AIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQAC---- 360

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           +N+     LG  +H   +K   +++  +  AL+D Y K      +  +F  + + N +  
Sbjct: 361 ANIAFLE-LGEQIHNLAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSW 419

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLI 276
            ++I G+   GF EDA  +F +     +    V +++++   + +  + + A+++H  + 
Sbjct: 420 NTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACA-NTSSIKHAVQIHSLIE 478

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           K+ F  D  + ++L+D YAKCG I DA +VF+ + + +V +W S+I  Y  +G    ALE
Sbjct: 479 KSTFNNDTIVCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALE 538

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           LF  M +  ++ N VTF+  LS CG  GLV++G  +F SM  D+ +KP MEHY C+V LL
Sbjct: 539 LFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLL 598

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456
           GRAG L  ALKF+ ++P  P+  VW ALLSSC +H +V +   AA ++  +  +D    Y
Sbjct: 599 GRAGRLTDALKFIGDIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEPHDET-TY 657

Query: 457 VALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           V LSN  AAAG  D V   R+ M+  GV K+ G SWV
Sbjct: 658 VLLSNMYAAAGILDEVALWRKSMRNVGVKKEAGLSWV 694



 Score =  138 bits (348), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 176/377 (46%), Gaps = 17/377 (4%)

Query: 7   IRSSVFSSTHNRHYTLVPPNQTFPPKLQNYD----SLSNP-LTATSLPSALQHYINSDTP 61
           IRS     T ++   L+  N      LQ  D    SL+ P L + +    LQ  I     
Sbjct: 2   IRSRSLLPTFSQINGLLSRNLAANEALQWLDDELASLALPKLDSYACARFLQRCIARGDA 61

Query: 62  FYGLKIHAHITKTG--VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIA 119
             G  +HA + + G   + +T  +  LL  + K G L  A ++FD +P+R   ++  ++ 
Sbjct: 62  RAGRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQ 121

Query: 120 GYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           GY   G+ EE+L L R+L   G   + +  + ILK       + P    L   +HA   K
Sbjct: 122 GYALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLV--TMDAP---GLACGIHACACK 176

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
                +  + TAL+D+Y   G   +AR VFD ++ K+ +  T+M+S +      E A   
Sbjct: 177 LGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNT 236

Query: 240 FRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
           F K      + +  V  + ++  ++ + +A     +H   +K ++  +  +G AL+DMYA
Sbjct: 237 FSKMRMTGFKPNPFVLTSALKA-AVCLSSALLGKGIHGCSVKTLYDTEPHVGGALLDMYA 295

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KCG I+DA  +F+ +   +V  W+ +I  Y ++    QA E+F  M    V PN  +  G
Sbjct: 296 KCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSG 355

Query: 356 ALSACGHAGLVDKGREI 372
            L AC +   ++ G +I
Sbjct: 356 VLQACANIAFLELGEQI 372



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 189/412 (45%), Gaps = 24/412 (5%)

Query: 48  LPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP 107
           L + L+  +  D P     IHA   K G   N  +   L+  +  CGA+ +A  +FD + 
Sbjct: 151 LTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIV 210

Query: 108 QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR 167
            +    +  M++ Y +N   E +L+   K+  +G +P+ +  +  LKA+ C  S +    
Sbjct: 211 GKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKAAVCLSSAL---- 266

Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
            LG+ +H   +K     +  +  AL+D Y K G    A  +F+M+   +VI  + +IS +
Sbjct: 267 -LGKGIHGCSVKTLYDTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDVILWSFLISRY 325

Query: 228 MSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY---SISIETARKALEVHCQLIKNVFFEDV 284
                 E A E+F + +   +V     + G      +I       ++H   IK  +  ++
Sbjct: 326 AQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNLAIKLGYESEL 385

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
            +G+AL+DMYAKC  ++++  +F  +Q  N  +W ++I GY ++G    AL +F  M+  
Sbjct: 386 FVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAA 445

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC--MVDLLGRAGSL 402
            +    VTF   L AC +   +    +I   +E+       +    C  ++D   + G +
Sbjct: 446 HMLSTQVTFSSVLRACANTSSIKHAVQIHSLIEKSTFNNDTI---VCNSLIDTYAKCGFI 502

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLH----------DDVEMANIAANEI 444
             ALK V E   + +   W +++S+  LH          D +  ++I AN++
Sbjct: 503 RDALK-VFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIKANDV 553



 Score = 98.6 bits (244), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 78/278 (28%), Positives = 134/278 (48%), Gaps = 15/278 (5%)

Query: 170 GRMVHAQILKCD--VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
           GR VHA++++     + D      L++ Y K G  + AR +FD M E+N +   +++ G+
Sbjct: 64  GRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGY 123

Query: 228 MSQGFVEDAEEIFRKTVEKDIVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDV 284
             +G  E+A E+FR+   +   V +     I    ++++    A  +H    K     + 
Sbjct: 124 ALRGEFEEALELFRRLQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNA 183

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
            +G+AL+D Y+ CG +  AR VFD +  K+  TWT+M+  Y +N  P  AL  F  M+  
Sbjct: 184 FVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMT 243

Query: 345 CVQPNYVTFLGALSA--CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
             +PN      AL A  C  + L+ KG     S++  Y  +P +     ++D+  + G +
Sbjct: 244 GFKPNPFVLTSALKAAVCLSSALLGKGIHGC-SVKTLYDTEPHVG--GALLDMYAKCGDI 300

Query: 403 EQALKFVLEMPEKPNSDVWAALLS----SCRLHDDVEM 436
           E A   + EM    +  +W+ L+S    SC+     EM
Sbjct: 301 EDA-HAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEM 337


>gi|242051881|ref|XP_002455086.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
 gi|241927061|gb|EES00206.1| hypothetical protein SORBIDRAFT_03g004125 [Sorghum bicolor]
          Length = 627

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 151/462 (32%), Positives = 237/462 (51%), Gaps = 43/462 (9%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +HAH+ + G+  N +++  L+  +   G    A  +  E    T  A+N +I+G+ + G+
Sbjct: 45  VHAHVVRLGMGRNAHVASSLVAAYTAGGDGAAARALVGECD--TPVAWNALISGHNRGGR 102

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
             ES      +  +G  P   T+  +L A      +V L    G  VH +++   V  D 
Sbjct: 103 FGESCGSFVDMARAGAAPTPVTYVSVLSACGKGTRDVLL----GMQVHGRVVGSGVLPDL 158

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
            +  ALVD Y +      A  VFD M  ++V+  TS++SG    G V++A ++F +  E+
Sbjct: 159 RVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPER 218

Query: 247 DIVVYNAMIEGYSISIETARKALE-----------------------------------V 271
           D V + AMI+GY +     R+ALE                                   V
Sbjct: 219 DTVSWTAMIDGY-VWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWV 277

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
              + +     D  +G+AL+DMY+KCG I+ A  VF  M  ++ FTWT++I G   NG  
Sbjct: 278 RVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAIILGLAVNGYE 337

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC 391
            +A+E+F  M      P+ VTF+G L+AC HAGLVDKGRE F SM   Y++ P + HY C
Sbjct: 338 EEAIEMFHRMIRVSETPDEVTFIGVLTACTHAGLVDKGREFFLSMIEAYNIAPNVVHYGC 397

Query: 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451
           ++DLLGRAG + +AL  + +MP  PNS +W  LL++CR+H + E+  + A  + +L+  +
Sbjct: 398 IIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGNSEIGELVAERLLELDPEN 457

Query: 452 RPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
               Y+ LSN  A   +W+ V  LR  +  +G+ K+ GCS +
Sbjct: 458 SM-VYILLSNIYAKCNRWEDVRRLRHAIMEKGIKKEPGCSLI 498



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 152/339 (44%), Gaps = 52/339 (15%)

Query: 128 EESLSLVRKLVSSGERPDGYTFSMILK--ASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           E++++   ++++ G RPD YTF  +LK  A     S    P    R VHA +++  +  +
Sbjct: 1   EDAVAGYARMLARGGRPDAYTFPALLKAVARAAGGSGSAAP---ARAVHAHVVRLGMGRN 57

Query: 186 DVLYTALVDSYVKGGKTSYARIVF---DMMLEKNVICSTSMISGFMSQ---GFVEDAEEI 239
             + ++LV +Y  GG  + AR +    D  +  N + S     G   +    FV+ A   
Sbjct: 58  AHVASSLVAAYTAGGDGAAARALVGECDTPVAWNALISGHNRGGRFGESCGSFVDMA--- 114

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC-- 297
            R       V Y +++             ++VH +++ +    D+++ +ALVDMYA+C  
Sbjct: 115 -RAGAAPTPVTYVSVLSACGKGTRDVLLGMQVHGRVVGSGVLPDLRVENALVDMYAECAD 173

Query: 298 -----------------------------GKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
                                        G++D+AR +FD M +++  +WT+MIDGY   
Sbjct: 174 MGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDLFDRMPERDTVSWTAMIDGYVWA 233

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
               +ALE+F  MQ   V  +  T +  ++AC   G ++ G  +   M R      KM+ 
Sbjct: 234 ARFREALEMFREMQYSNVSADEFTMVSVITACAQLGALEMGEWVRVYMSRQ---GIKMDA 290

Query: 389 YA--CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
           +    ++D+  + GS+E+AL     M  + +   W A++
Sbjct: 291 FVGNALIDMYSKCGSIERALDVFKGMHHR-DKFTWTAII 328



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 77/353 (21%), Positives = 144/353 (40%), Gaps = 44/353 (12%)

Query: 14  STHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITK 73
           S HNR         +F   +    +   P+T  S+ SA      +     G+++H  +  
Sbjct: 95  SGHNRGGRFGESCGSFV-DMARAGAAPTPVTYVSVLSACGK--GTRDVLLGMQVHGRVVG 151

Query: 74  TGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL 133
           +GV P+  +   L+ ++ +C  +  A ++FD +  R++ ++  +++G  + GQV+E+  L
Sbjct: 152 SGVLPDLRVENALVDMYAECADMGSAWKVFDGMQVRSVVSWTSLLSGLARLGQVDEARDL 211

Query: 134 V-----RKLVSSGERPDGYT------------------------FSMILKASTCCRSNVP 164
                 R  VS     DGY                         F+M+   + C +    
Sbjct: 212 FDRMPERDTVSWTAMIDGYVWAARFREALEMFREMQYSNVSADEFTMVSVITACAQLG-- 269

Query: 165 LPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
               +G  V   + +  +K D  +  AL+D Y K G    A  VF  M  ++    T++I
Sbjct: 270 -ALEMGEWVRVYMSRQGIKMDAFVGNALIDMYSKCGSIERALDVFKGMHHRDKFTWTAII 328

Query: 225 SGFMSQGFVEDAEEIFRKTVE----KDIVVYNAMIEGYSISIETARKALEVHCQLIK--N 278
            G    G+ E+A E+F + +      D V +  ++   + +     K  E    +I+  N
Sbjct: 329 LGLAVNGYEEEAIEMFHRMIRVSETPDEVTFIGVLTACTHA-GLVDKGREFFLSMIEAYN 387

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHM-QQKNVFTWTSMIDGYGKNGN 330
           +    V  G  ++D+  + GKI +A    D M    N   W +++     +GN
Sbjct: 388 IAPNVVHYG-CIIDLLGRAGKITEALDTIDQMPMTPNSTIWGTLLAACRVHGN 439


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 152/481 (31%), Positives = 257/481 (53%), Gaps = 42/481 (8%)

Query: 38  SLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALK 97
           SLS    A +L   L           GL+I+    K+ +  +  ++   + ++ KC AL 
Sbjct: 342 SLSGVFRACALVKGLSE---------GLQIYDLAIKSSLSLDVCVANAAIDMYGKCQALA 392

Query: 98  YAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
            A ++FDE+ +R   ++N +IA + +NG+  E+L L   ++ S   PD +TF  +LKA T
Sbjct: 393 EAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKACT 452

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
                       G  +H+ I+K  + ++  +  +L+D Y K G    A  +     ++  
Sbjct: 453 ------GGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRTN 506

Query: 218 ICST--------------------SMISGFMSQGFVEDAEEIFRKTVEKDIV----VYNA 253
           +  T                    S+ISG++ +   EDA+ +F + +E  I      Y  
Sbjct: 507 VSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYAT 566

Query: 254 MIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK 313
           +++  + ++ +A    ++H Q+IK     DV + S LVDMY+KCG + D+R +F+   ++
Sbjct: 567 VLDTCA-NLASAGLGKQIHAQVIKKELQSDVYISSTLVDMYSKCGDLHDSRLMFEKSLRR 625

Query: 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF 373
           +  TW +MI GY  +G   +A++LF  M    ++PN+VTF+  L AC H GL+DKG E F
Sbjct: 626 DFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYF 685

Query: 374 ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH-D 432
             M+RDY + P++ HY+ MVD+LG++G +++AL+ + EMP + +  +W  LL  C +H +
Sbjct: 686 YMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRN 745

Query: 433 DVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSW 492
           +VE+A  A   + +L+  D   AY  LSN  A AG W+ V++LR  M+   + K+ GCSW
Sbjct: 746 NVEVAEEATAALLRLDPQD-SSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSW 804

Query: 493 V 493
           V
Sbjct: 805 V 805



 Score =  125 bits (314), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 189/403 (46%), Gaps = 51/403 (12%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMI----- 118
           G + HAH+  +G +P T +   LL ++        A  +FD +P R + ++N MI     
Sbjct: 25  GKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSWNKMINGYAK 84

Query: 119 --------------------------AGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
                                     +GYL+NG+  +S+ +   +  +G   DG TF++I
Sbjct: 85  SNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTEFDGRTFAII 144

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           LK  +C         +LG  +H  +++     D V  +AL+D Y KG +   +  VF  +
Sbjct: 145 LKVCSCLEDT-----SLGMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGI 199

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKA 268
            EKN +  +++I+G +    +  A + F++  + +      +Y +++   + ++   R  
Sbjct: 200 PEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCA-ALSELRLG 258

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
            ++H   +K+ F  D  + +A +DMYAKC  + DA+ +FD  +  N  ++ +MI GY + 
Sbjct: 259 GQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYSQE 318

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
            +  +AL LF  +    +  + ++  G   AC     + +G +I+     D ++K  +  
Sbjct: 319 EHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIY-----DLAIKSSLSL 373

Query: 389 YACM----VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
             C+    +D+ G+  +L +A +   EM  + ++  W A++++
Sbjct: 374 DVCVANAAIDMYGKCQALAEAFRVFDEM-RRRDAVSWNAIIAA 415



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 169/360 (46%), Gaps = 16/360 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH  + + G   +   +  LL ++ K      + ++F  +P++   +++ +IAG ++
Sbjct: 157 GMQIHGVVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQ 216

Query: 124 NGQVEESLSLVRKL--VSSGERPDGYTFSMILKASTCCRSNVPLPR-NLGRMVHAQILKC 180
           N  +  +L   +++  V++G     Y        ++  RS   L    LG  +HA  LK 
Sbjct: 217 NNLLSLALKFFKEMQKVNAGVSQSIY--------ASVLRSCAALSELRLGGQLHAHALKS 268

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
           D  AD ++ TA +D Y K      A+I+FD     N     +MI+G+  +     A  +F
Sbjct: 269 DFAADGIVRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLF 328

Query: 241 RKTVEKDIVVYNAMIEGYSIS---IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
            + +   +      + G   +   ++   + L+++   IK+    DV + +A +DMY KC
Sbjct: 329 HRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYDLAIKSSLSLDVCVANAAIDMYGKC 388

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
             + +A RVFD M++++  +W ++I  + +NG   + L LF  M    ++P+  TF   L
Sbjct: 389 QALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVL 448

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            AC   G +  G EI  S+ +   M         ++D+  + G +E+A K      ++ N
Sbjct: 449 KACT-GGSLGYGMEIHSSIVKS-GMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRTN 506



 Score = 76.6 bits (187), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 108/243 (44%), Gaps = 14/243 (5%)

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           K G +E        ++ SG RP  +  + +L+  T  R  V       RM          
Sbjct: 18  KQGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMP--------- 68

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-- 240
             D V +  +++ Y K      A   F+MM  ++V+   SM+SG++  G    + E+F  
Sbjct: 69  LRDVVSWNKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVD 128

Query: 241 --RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
             R   E D   + A+I      +E     +++H  +++     DV   SAL+DMYAK  
Sbjct: 129 MGRAGTEFDGRTF-AIILKVCSCLEDTSLGMQIHGVVVRVGCDTDVVAASALLDMYAKGK 187

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           +  ++ RVF  + +KN  +W+++I G  +N   + AL+ F  MQ+     +   +   L 
Sbjct: 188 RFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLR 247

Query: 359 ACG 361
           +C 
Sbjct: 248 SCA 250



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 47/196 (23%), Positives = 91/196 (46%), Gaps = 8/196 (4%)

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             DV   + +++ YAK   +  A   F+ M  ++V +W SM+ GY +NG   +++E+F  
Sbjct: 69  LRDVVSWNKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVD 128

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           M     + +  TF   L  C        G +I   + R       +   + ++D+  +  
Sbjct: 129 MGRAGTEFDGRTFAIILKVCSCLEDTSLGMQIHGVVVR-VGCDTDVVAASALLDMYAKGK 187

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
              ++L+    +PEK NS  W+A+++ C  ++ + +A     E+ K+NA      Y ++ 
Sbjct: 188 RFVESLRVFQGIPEK-NSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVL 246

Query: 461 NTLAAAGKWDSVTELR 476
            + AA      ++ELR
Sbjct: 247 RSCAA------LSELR 256


>gi|222640201|gb|EEE68333.1| hypothetical protein OsJ_26615 [Oryza sativa Japonica Group]
          Length = 983

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 148/422 (35%), Positives = 219/422 (51%), Gaps = 39/422 (9%)

Query: 108 QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR 167
           +R+   +N +I     + +   +L L   L+ +G  P  +T   +LK S      VP  R
Sbjct: 168 RRSADLHNALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLK-SLALSPAVPGAR 226

Query: 168 NLGRMVHAQ--------------------------------ILKCDVKADDVLYTALVDS 195
            L   VHA                                 +L+     D   +  L+ +
Sbjct: 227 GLALAVHAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITA 286

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVY 251
           Y + G+ + AR +FD M  +N +  ++M++G++  G   +A  +F +     V  D  V 
Sbjct: 287 YARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVL 346

Query: 252 NAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311
             ++   +  +    +   VH  L  N     V LG+ALVDMYAKCG++  A  VF  M+
Sbjct: 347 VGVLAACA-QLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMK 405

Query: 312 QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371
           +KNV  WT+MI G   +G  ++ALELF  M+   V+P+ + F+GAL AC H GLVDKGRE
Sbjct: 406 EKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRE 465

Query: 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           +F+SM R Y +KPK+EHY CMVDLL R G L +A + V +MP KP++ +W AL++ CR H
Sbjct: 466 LFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFH 525

Query: 432 DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
            +VE+A        +L   D+ GAYV L N  AA+G+  S  E+R  M+ +GV K  GCS
Sbjct: 526 KNVELAEYVVKHWIELEP-DKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCS 584

Query: 492 WV 493
            V
Sbjct: 585 TV 586



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 124/262 (47%), Gaps = 16/262 (6%)

Query: 71  ITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEES 130
           + +T    + +    L+  + + G +  A  +FDE+P R   +++ M+ GY++ G   E+
Sbjct: 268 LLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREA 327

Query: 131 LSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT 190
           L L  ++ + G RPD      +L A  C +  V      G+ VH  +   +++    L T
Sbjct: 328 LGLFARMQADGVRPDDTVLVGVLAA--CAQLGV---LEQGKWVHGYLKANNIRITVFLGT 382

Query: 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEK 246
           ALVD Y K G+   A  VF +M EKNV+  T+MI G    G   +A E+F    R  V+ 
Sbjct: 383 ALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKP 442

Query: 247 DIVVYNAMIEGYSISIETA--RKALEVHCQLIKNVFFE-DVKLGSALVDMYAKCGKIDDA 303
           D +   A I        T    K  E+   +++    +  ++    +VD+ A+ G +++A
Sbjct: 443 DDI---AFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEA 499

Query: 304 RRVFDHMQQK-NVFTWTSMIDG 324
           R + + M  K +   W +++ G
Sbjct: 500 REMVEKMPMKPDALIWGALMAG 521



 Score = 52.8 bits (125), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/183 (21%), Positives = 84/183 (45%), Gaps = 5/183 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H ++    ++    +   L+ ++ KCG ++ A ++F  + ++ + A+  MI G   
Sbjct: 362 GKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAM 421

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G+  E+L L  ++   G +PD   F   L    C  ++  L      +  + + K  +K
Sbjct: 422 HGRGSEALELFSQMERLGVKPDDIAFIGAL----CACTHTGLVDKGRELFDSMVRKYGIK 477

Query: 184 ADDVLYTALVDSYVKGGKTSYAR-IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
                Y  +VD   + G  + AR +V  M ++ + +   ++++G      VE AE + + 
Sbjct: 478 PKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKH 537

Query: 243 TVE 245
            +E
Sbjct: 538 WIE 540


>gi|297824945|ref|XP_002880355.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297326194|gb|EFH56614.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 599

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 167/554 (30%), Positives = 277/554 (50%), Gaps = 74/554 (13%)

Query: 11  VFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAH 70
           V  S  +RH T    +Q    +L++       L    L S LQ   ++ +   G  IH H
Sbjct: 13  VARSLLSRHATKAELSQAVS-RLESLTQQGIRLPFDLLASLLQQCGDTKSLKQGKWIHRH 71

Query: 71  ITKTGVK-PNTNISIKLLILHLKCG----ALKYAGQM----------------------- 102
           +  TG K PNT +S  L+ +++KCG    A K   QM                       
Sbjct: 72  LKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSGFVKSGMLVR 131

Query: 103 ----FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
               FD +P+R + ++N M+ GY ++G + E+L   ++L  SG + + ++F+ +L A  C
Sbjct: 132 ARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSGIKFNEFSFAGLLTA--C 189

Query: 159 CRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI 218
            +S       L +  H Q+L     ++ VL  +++D+Y K G+   A+  FD M  K++ 
Sbjct: 190 VKSR---QLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTVKDIH 246

Query: 219 CSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY-------------------- 258
             T++ISG+   G +E A+++FR+  EK+ V + A+I GY                    
Sbjct: 247 IWTTLISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKMIAMR 306

Query: 259 --------------SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDAR 304
                         S SI + R   ++H  +I+     +  + S+L+DMY+K G ++ + 
Sbjct: 307 VKPEQFTFSSCLCASASIASLRHGKQIHGYMIRTNVRPNAIVTSSLIDMYSKSGSLEASE 366

Query: 305 RVFDH-MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
           RVF     +++   W +MI    ++G  ++AL++   M +  V PN  T +  L+AC H+
Sbjct: 367 RVFRICYDKQDCVLWNTMISALAQHGLGHKALQMLDDMIKFRVHPNRTTLVVILNACSHS 426

Query: 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA 423
           GLV++G   FESM   + + P  EHYAC++DLLGRAG  ++ +  + EMP +P+  +W A
Sbjct: 427 GLVEEGVRWFESMTVQHGIVPDQEHYACLIDLLGRAGCFKELMSKIEEMPFEPDKHIWNA 486

Query: 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483
           +L  CR+H + E+   AA E+ KL+  +    Y+ LS+  A  GKW+ V +LR  MK R 
Sbjct: 487 ILGVCRIHGNEELGKKAAEELIKLDP-ESSAPYILLSSIYADHGKWELVEKLRGIMKKRR 545

Query: 484 VLKDTGCSWVGTES 497
           V K+   SW+  E+
Sbjct: 546 VNKEKAVSWIEIEN 559



 Score =  107 bits (267), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 99/447 (22%), Positives = 184/447 (41%), Gaps = 73/447 (16%)

Query: 108 QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR 167
           +R +     +++ +    ++ +++S +  L   G R     F ++      C     L +
Sbjct: 8   KRPICVARSLLSRHATKAELSQAVSRLESLTQQGIR---LPFDLLASLLQQCGDTKSLKQ 64

Query: 168 NLGRMVHAQILKCDVKADDVLYT-ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
             G+ +H  +     K  + L +  L+  Y+K GK   A  VFD M  +N+    +M+SG
Sbjct: 65  --GKWIHRHLKITGFKRPNTLLSNHLIGMYMKCGKPIDACKVFDQMHLRNLYSWNNMVSG 122

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS----------ISIETARKAL------- 269
           F+  G +  A  +F    E+D+V +N M+ GY+             E  R  +       
Sbjct: 123 FVKSGMLVRARVVFDSMPERDVVSWNTMVIGYAQDGNLHEALWFFKELRRSGIKFNEFSF 182

Query: 270 -----------------EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ 312
                            + H Q++   F  +V L  +++D YAKCG+++ A+R FD M  
Sbjct: 183 AGLLTACVKSRQLQLNQQAHGQVLVAGFLSNVVLSCSIIDAYAKCGQMESAKRCFDEMTV 242

Query: 313 KNVFTWTSMIDGYGKNG---------------NP----------------NQALELFCMM 341
           K++  WT++I GY K G               NP                + AL+LF  M
Sbjct: 243 KDIHIWTTLISGYAKLGDMEAADKLFREMPEKNPVSWTALIAGYVRQGSGDLALDLFRKM 302

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGS 401
               V+P   TF   L A      +  G++I   M R  +++P     + ++D+  ++GS
Sbjct: 303 IAMRVKPEQFTFSSCLCASASIASLRHGKQIHGYMIRT-NVRPNAIVTSSLIDMYSKSGS 361

Query: 402 LEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSN 461
           LE + +      +K +  +W  ++S+   H     A    +++ K   +      V + N
Sbjct: 362 LEASERVFRICYDKQDCVLWNTMISALAQHGLGHKALQMLDDMIKFRVHPNRTTLVVILN 421

Query: 462 TLAAAGKWDSVTELREKMKLR-GVLKD 487
             + +G  +      E M ++ G++ D
Sbjct: 422 ACSHSGLVEEGVRWFESMTVQHGIVPD 448


>gi|356540844|ref|XP_003538894.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 748

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 152/473 (32%), Positives = 252/473 (53%), Gaps = 55/473 (11%)

Query: 78  PNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL 137
           PN    + +L    K G +  A ++FD +P + + ++N MIA Y+++ QV+E++ L +K+
Sbjct: 233 PNAVSWVTMLCGLAKYGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQVDEAVKLFKKM 292

Query: 138 -----VSSGERPDGYTFSMILKASTCCRSNVP-------------LPRNLGRMVHAQILK 179
                VS     +GY     L  +    + +P             L +N GR+  A  + 
Sbjct: 293 PHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGLIQN-GRIDEADQMF 351

Query: 180 CDVKADDVL-YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
             + A DV+ + +++  Y + G+   A  +F  M  KN +   +MISG+   G ++ A E
Sbjct: 352 SRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMPIKNSVSWNTMISGYAQAGQMDRATE 411

Query: 239 IFRKTVEKDIVVYNAMIEGY------------------------------SISIETARKA 268
           IF+   EK+IV +N++I G+                              ++S      A
Sbjct: 412 IFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLVMMGKEGKKPDQSTFACTLSACANLAA 471

Query: 269 LEVHCQL----IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
           L+V  QL    +K+ +  D+ +G+AL+ MYAKCG++  A +VF  ++  ++ +W S+I G
Sbjct: 472 LQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECVDLISWNSLISG 531

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP 384
           Y  NG  N+A + F  M    V P+ VTF+G LSAC HAGL ++G +IF+ M  D++++P
Sbjct: 532 YALNGYANKAFKAFEQMSSERVVPDEVTFIGMLSACSHAGLANQGLDIFKCMIEDFAIEP 591

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
             EHY+C+VDLLGR G LE+A   V  M  K N+ +W +LL +CR+H ++E+   AA  +
Sbjct: 592 LAEHYSCLVDLLGRVGRLEEAFNTVRGMKVKANAGLWGSLLGACRVHKNLELGRFAAERL 651

Query: 445 FKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTES 497
           F+L  ++    Y+ LSN  A AG+W+ V  +R  M+ +   K  GCSW+  ++
Sbjct: 652 FELEPHNASN-YITLSNMHAEAGRWEEVERVRMLMRGKRAGKQPGCSWIEVQN 703



 Score =  121 bits (303), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 99/370 (26%), Positives = 171/370 (46%), Gaps = 58/370 (15%)

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV-----RKLVSSGERP 144
           + K G    A ++F+++P + L +YN M+AGY +NG++  +L        R +VS     
Sbjct: 152 YAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNVVSWNLMV 211

Query: 145 DGYTFSMILKASTCCRSNVPLPRNL------------GRMVHA----------------- 175
            GY  S  L ++      +P P  +            G+M  A                 
Sbjct: 212 AGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLCGLAKYGKMAEARELFDRMPSKNVVSWNA 271

Query: 176 ------QILKCD--VK-------ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
                 Q L+ D  VK        D V +T +++ Y++ GK   AR V++ M  K++   
Sbjct: 272 MIATYVQDLQVDEAVKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQ 331

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQL-IKNV 279
           T+++SG +  G +++A+++F +    D+V +N+MI GYS S     +AL +  Q+ IKN 
Sbjct: 332 TALMSGLIQNGRIDEADQMFSRIGAHDVVCWNSMIAGYSRS-GRMDEALNLFRQMPIKNS 390

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
              +      ++  YA+ G++D A  +F  M++KN+ +W S+I G+ +N     AL+   
Sbjct: 391 VSWNT-----MISGYAQAGQMDRATEIFQAMREKNIVSWNSLIAGFLQNNLYLDALKSLV 445

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA--CMVDLLG 397
           MM +   +P+  TF   LSAC +   +  G ++ E + +   M       A   M    G
Sbjct: 446 MMGKEGKKPDQSTFACTLSACANLAALQVGNQLHEYILKSGYMNDLFVGNALIAMYAKCG 505

Query: 398 RAGSLEQALK 407
           R  S EQ  +
Sbjct: 506 RVQSAEQVFR 515



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 168/361 (46%), Gaps = 48/361 (13%)

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           K   ++ A Q+FD++  R L ++N MIAGYL N  VEE+  L   +    ER D +++++
Sbjct: 60  KNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVM---PER-DNFSWAL 115

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           ++   T  +  +   R L  +V         K D   + A++  Y K G+ + A+ VF+ 
Sbjct: 116 MITCYTR-KGKLEKARELLELVPD-------KLDTACWNAMIAGYAKKGQFNDAKKVFEQ 167

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV 271
           M  K+++   SM++G+   G +  A + F    E+++V +N M+ GY  S +     L  
Sbjct: 168 MPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNVVSWNLMVAGYVKSGD-----LSS 222

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
             QL + +   +      ++   AK GK+ +AR +FD M  KNV +W +MI  Y ++   
Sbjct: 223 AWQLFEKIPNPNAVSWVTMLCGLAKYGKMAEARELFDRMPSKNVVSWNAMIATYVQDLQV 282

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM--------------- 376
           ++A++LF  M       + V++   ++     G +D+ R+++  M               
Sbjct: 283 DEAVKLFKKMP----HKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDITAQTALMSGL 338

Query: 377 -------ERDYSMKPKMEH----YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
                  E D        H    +  M+    R+G +++AL    +MP K NS  W  ++
Sbjct: 339 IQNGRIDEADQMFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFRQMPIK-NSVSWNTMI 397

Query: 426 S 426
           S
Sbjct: 398 S 398



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 76/305 (24%), Positives = 145/305 (47%), Gaps = 22/305 (7%)

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
           V Y +++    K  +   AR +FD M  +N++   +MI+G++    VE+A E+F    E+
Sbjct: 49  VTYNSMISVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMPER 108

Query: 247 DIVVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDAR 304
           D   +  MI  Y+    +E AR+ LE    L+ +    D    +A++  YAK G+ +DA+
Sbjct: 109 DNFSWALMITCYTRKGKLEKARELLE----LVPDKL--DTACWNAMIAGYAKKGQFNDAK 162

Query: 305 RVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG 364
           +VF+ M  K++ ++ SM+ GY +NG  + AL+ F    E   + N V++   ++    +G
Sbjct: 163 KVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFF----ESMTERNVVSWNLMVAGYVKSG 218

Query: 365 LVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAAL 424
            +    ++FE +       P    +  M+  L + G + +A +    MP K N   W A+
Sbjct: 219 DLSSAWQLFEKIP-----NPNAVSWVTMLCGLAKYGKMAEARELFDRMPSK-NVVSWNAM 272

Query: 425 LSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGV 484
           +++      V+     A ++FK   +    ++  + N     GK D   ++  +M  + +
Sbjct: 273 IATYVQDLQVD----EAVKLFKKMPHKDSVSWTTIINGYIRVGKLDEARQVYNQMPCKDI 328

Query: 485 LKDTG 489
              T 
Sbjct: 329 TAQTA 333



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 102/408 (25%), Positives = 180/408 (44%), Gaps = 75/408 (18%)

Query: 90  HLKCGALKYAGQMFDELPQR--------------------------------TLSAYNYM 117
           +L    ++ A ++FD +P+R                                  + +N M
Sbjct: 89  YLHNNMVEEASELFDVMPERDNFSWALMITCYTRKGKLEKARELLELVPDKLDTACWNAM 148

Query: 118 IAGYLKNGQVEESLSL-----VRKLVSSGERPDGYT------FSMILKASTCCRSNVPLP 166
           IAGY K GQ  ++  +      + LVS      GYT       ++    S   R+ V   
Sbjct: 149 IAGYAKKGQFNDAKKVFEQMPAKDLVSYNSMLAGYTQNGKMHLALQFFESMTERNVVSWN 208

Query: 167 RNLGRMVHA-------QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVIC 219
             +   V +       Q+ +     + V +  ++    K GK + AR +FD M  KNV+ 
Sbjct: 209 LMVAGYVKSGDLSSAWQLFEKIPNPNAVSWVTMLCGLAKYGKMAEARELFDRMPSKNVVS 268

Query: 220 STSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
             +MI+ ++    V++A ++F+K   KD V +  +I GY I +    +A +V+ Q+    
Sbjct: 269 WNAMIATYVQDLQVDEAVKLFKKMPHKDSVSWTTIINGY-IRVGKLDEARQVYNQMP--- 324

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
             +D+   +AL+    + G+ID+A ++F  +   +V  W SMI GY ++G  ++AL LF 
Sbjct: 325 -CKDITAQTALMSGLIQNGRIDEADQMFSRIGAHDVVCWNSMIAGYSRSGRMDEALNLFR 383

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
            M       N V++   +S    AG +D+  EIF++M      K  +   + +   L   
Sbjct: 384 QMP----IKNSVSWNTMISGYAQAGQMDRATEIFQAMRE----KNIVSWNSLIAGFLQNN 435

Query: 400 GSLEQALKFVLEM---PEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
             L+ ALK ++ M    +KP+   +A  LS+C        AN+AA ++
Sbjct: 436 LYLD-ALKSLVMMGKEGKKPDQSTFACTLSAC--------ANLAALQV 474



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 51/188 (27%), Positives = 76/188 (40%), Gaps = 50/188 (26%)

Query: 231 GFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSAL 290
           G VE+A  IF     K++V YN+MI                                   
Sbjct: 31  GKVEEAIRIFFNMTHKNLVTYNSMI----------------------------------- 55

Query: 291 VDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY 350
             + AK  +I DAR++FD M  +N+ +W +MI GY  N    +A ELF +M E   + N+
Sbjct: 56  -SVLAKNARIRDARQLFDQMSLRNLVSWNTMIAGYLHNNMVEEASELFDVMPE---RDNF 111

Query: 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC---MVDLLGRAGSLEQALK 407
              L  ++     G ++K RE+ E       + P     AC   M+    + G    A K
Sbjct: 112 SWAL-MITCYTRKGKLEKARELLE-------LVPDKLDTACWNAMIAGYAKKGQFNDAKK 163

Query: 408 FVLEMPEK 415
              +MP K
Sbjct: 164 VFEQMPAK 171



 Score = 48.9 bits (115), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 50/94 (53%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H +I K+G   +  +   L+ ++ KCG ++ A Q+F ++    L ++N +I+GY  
Sbjct: 475 GNQLHEYILKSGYMNDLFVGNALIAMYAKCGRVQSAEQVFRDIECVDLISWNSLISGYAL 534

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           NG   ++     ++ S    PD  TF  +L A +
Sbjct: 535 NGYANKAFKAFEQMSSERVVPDEVTFIGMLSACS 568


>gi|413934702|gb|AFW69253.1| hypothetical protein ZEAMMB73_589560 [Zea mays]
          Length = 664

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 140/345 (40%), Positives = 197/345 (57%), Gaps = 38/345 (11%)

Query: 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV 250
           +L+ +YV  G    AR VFD ML K+VI  TS++  +     +  AEE+F     KD+V 
Sbjct: 198 SLISAYVACGDVGAARKVFDEMLVKDVISWTSIVVAYSRIRDMGSAEEVFALCPVKDMVA 257

Query: 251 YNAMIEGYSISIETARKALEVHCQLI---------------------------------- 276
           + AM+ GY+ +     KALE   Q+                                   
Sbjct: 258 WTAMVTGYAQNAMPV-KALEAFEQMAVAGMPIDEVSLTGAISACAQLGAVKRAAWVQEIA 316

Query: 277 -KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
            +N    +V +GS LVDMYAKCG ID+AR+VF+ M  KNV+T++SMI G   +G  N  +
Sbjct: 317 ERNGLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSSMIVGLASHGRANDVI 376

Query: 336 ELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394
            LF  M++   V+PN+VTF+G L+AC HAG+V +GR  F  M+  Y + P  +HYACMVD
Sbjct: 377 ALFNDMVRRADVEPNHVTFIGVLTACSHAGMVKEGRYYFAQMKDRYGILPSADHYACMVD 436

Query: 395 LLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG 454
           LL R+G + +AL  V  M  +P+  VW ALL +CR+H + E+A IAA  +F+L   +  G
Sbjct: 437 LLARSGLVTEALDLVKSMTVEPHGGVWGALLGACRIHGNTEVAKIAAEHLFRLEP-EGIG 495

Query: 455 AYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
            YV LSNTLA+AG+WD V++LR+ M++RG+ KD   SW     G 
Sbjct: 496 NYVLLSNTLASAGEWDEVSKLRKLMRIRGLKKDPAVSWFEGRDGF 540



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 92/199 (46%), Gaps = 13/199 (6%)

Query: 245 EKDIVVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
           +K   V N++I  Y     +  ARK  +        +  +DV   +++V  Y++   +  
Sbjct: 190 DKHRFVENSLISAYVACGDVGAARKVFD-------EMLVKDVISWTSIVVAYSRIRDMGS 242

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           A  VF     K++  WT+M+ GY +N  P +ALE F  M    +  + V+  GA+SAC  
Sbjct: 243 AEEVFALCPVKDMVAWTAMVTGYAQNAMPVKALEAFEQMAVAGMPIDEVSLTGAISACAQ 302

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK---PNSD 419
            G V +   + E  ER+  +   +   + +VD+  + G +++A K    M +K     S 
Sbjct: 303 LGAVKRAAWVQEIAERN-GLGRNVVVGSGLVDMYAKCGLIDEARKVFEGMHDKNVYTYSS 361

Query: 420 VWAALLSSCRLHDDVEMAN 438
           +   L S  R +D + + N
Sbjct: 362 MIVGLASHGRANDVIALFN 380


>gi|359477376|ref|XP_002280144.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 642

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 143/409 (34%), Positives = 233/409 (56%), Gaps = 21/409 (5%)

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149
           ++K G +  A  +FD +P + L+++N M++GY+  G        V   +  G+ P   T 
Sbjct: 208 YVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYMDIGDC------VNARIIFGKMPIHDTG 261

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVL-YTALVDSYVKGGKTSYARIV 208
           S  +  S  C++        G +  A+     +   +V+ +  ++D Y+K G T+ AR +
Sbjct: 262 SWNIMISGFCKA--------GELESAKDFFDRMPNKNVISWGIMLDGYIKNGDTNGARCL 313

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKA 268
           FD M  KN++  ++MI G+   G    A E+F +  E+DI      I G  IS  +    
Sbjct: 314 FDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFILGI-ISACSQLGI 372

Query: 269 LEVHCQLIKNV----FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
           ++    +I N        D+++ ++L+DMYAKCG I+ A ++F+    K++  +++MI  
Sbjct: 373 IDAAESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAA 432

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP 384
              +G    A+ LF  MQ   ++P+ VTFLG L+AC H GLVD+GR+ F+ M  ++ ++P
Sbjct: 433 LANHGLGRDAIFLFDKMQRANIKPDSVTFLGVLTACNHGGLVDEGRKYFKQMTEEFGIQP 492

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
             +HYAC+VDLLGR G LE+A   +  MP  P+S VW ALL++CR+H +V++A +AA E+
Sbjct: 493 SEKHYACVVDLLGRVGCLEEAYNLIRNMPIAPHSVVWGALLAACRVHCNVQLAEVAAAEL 552

Query: 445 FKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           FK+   D  G Y+ LSN  AAAG+W SV ++R K++   V K+ G SW+
Sbjct: 553 FKIEP-DNSGNYILLSNIYAAAGRWGSVAKVRAKIREHRVRKNRGSSWI 600



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 115/464 (24%), Positives = 210/464 (45%), Gaps = 84/464 (18%)

Query: 54  HYINSDTPFYGLK-IHAHI-TKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL 111
           H I++      LK IHA +  ++ V  +  +  KLL L+ + GA  YA ++FDE+ Q   
Sbjct: 7   HIIHNCKTLKSLKSIHARLLIESSVASSEFVINKLLRLYSRFGATDYAHKVFDEITQPNA 66

Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR-NLG 170
             +  +I GY++N Q +E+ SL  ++         +T S +LKA         L R   G
Sbjct: 67  YLWTSLIHGYVENRQYDEAFSLFIQMRREPISVLNFTISSVLKALA------RLTRFKGG 120

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           + V+  +LK     D ++  +++D +++  K   AR  FD M EK+++    MISG+ + 
Sbjct: 121 QAVYGFVLKYGFAFDLIVQNSVLDLFMRCRKVDTARQAFDEMCEKDIVSWNMMISGYGNN 180

Query: 231 GFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKN------------ 278
             V+ A + F +  E+++V + +MI GY  + + A   +      +K+            
Sbjct: 181 DRVDIARKFFDRMPERNVVSWTSMICGYVKAGDMAEAQVLFDSMPVKDLASWNVMVSGYM 240

Query: 279 ----------VF----FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF-------- 316
                     +F      D    + ++  + K G+++ A+  FD M  KNV         
Sbjct: 241 DIGDCVNARIIFGKMPIHDTGSWNIMISGFCKAGELESAKDFFDRMPNKNVISWGIMLDG 300

Query: 317 -----------------------TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
                                  TW++MI GY +NG P +ALELF   +E  ++P+    
Sbjct: 301 YIKNGDTNGARCLFDQMPMKNLVTWSTMIGGYARNGQPLKALELFERFKEQDIKPDETFI 360

Query: 354 LGALSACGHAGLVDKGREIFESMERDY---SMKPKMEHYACMVDLLGRAGSLEQALKFVL 410
           LG +SAC   G++D      ES+  +Y   S+   +  +  ++D+  + GS+E+AL+ + 
Sbjct: 361 LGIISACSQLGIIDAA----ESIIHNYVGPSLLSDLRVFTSLIDMYAKCGSIEKALQ-MF 415

Query: 411 EMPEKPNSDVWAALLSSCRLH----------DDVEMANIAANEI 444
           EM    +   ++ ++++   H          D ++ ANI  + +
Sbjct: 416 EMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPDSV 459



 Score = 41.2 bits (95), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 39/70 (55%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           L+ ++ KCG+++ A QMF+    + L  Y+ MIA    +G   +++ L  K+  +  +PD
Sbjct: 398 LIDMYAKCGSIEKALQMFEMAHPKDLLCYSTMIAALANHGLGRDAIFLFDKMQRANIKPD 457

Query: 146 GYTFSMILKA 155
             TF  +L A
Sbjct: 458 SVTFLGVLTA 467


>gi|413944960|gb|AFW77609.1| hypothetical protein ZEAMMB73_798524 [Zea mays]
          Length = 665

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 157/504 (31%), Positives = 247/504 (49%), Gaps = 83/504 (16%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP--QRTLSAYNYMIAGYLKN 124
           +HA    +G+  +  ++  LL  +L+ G    A  +FD +P  QRT+  ++ ++A +   
Sbjct: 39  LHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQRTVVGWSALVAAHAAR 98

Query: 125 GQVEESLSLVRKLVSSGE-------------------------------------RPDGY 147
           G  E +  L+ ++   G                                      RPD  
Sbjct: 99  GDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRSGRARDAVVALATMHGEGLLRPDAT 158

Query: 148 TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARI 207
             S  L A      +V L  ++G+ +H   +K   +AD  + TAL+D Y K G+ +    
Sbjct: 159 GVSCALSAV----GDVGLV-SVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVR 213

Query: 208 VFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR----KTVEKDIVVYNAMI-------- 255
           VFD     +V    ++I+G      V +A  +F+    + VE ++V + +++        
Sbjct: 214 VFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIVACCVQNGK 273

Query: 256 ----------------EGYSISIETARKAL----------EVHCQLIKNVFFEDVKLGSA 289
                           E  S++I     A             HC  ++  F  DV + SA
Sbjct: 274 DLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSA 333

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349
           LVDMYAKCG++ DAR +FD M  +NV +W +MI GY   G    A+ +F  M +C  +P+
Sbjct: 334 LVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPD 393

Query: 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFV 409
            VTF   L+AC  AGL ++GR  F+ M  +Y + P+MEHYACMV LLGRAG L++A   +
Sbjct: 394 MVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHYACMVTLLGRAGKLDEAYDLI 453

Query: 410 LEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKW 469
            +MP +P++ +W +LL SCR+H +V++A +AA ++F L   +  G YV LSN  A+   W
Sbjct: 454 SDMPFEPDAYIWGSLLGSCRVHGNVDLAEVAAEKLFHLEPEN-AGNYVLLSNIYASKKMW 512

Query: 470 DSVTELREKMKLRGVLKDTGCSWV 493
           D V  +RE MK  G+ K+ GCSW+
Sbjct: 513 DRVNRVREMMKDVGLKKEKGCSWI 536



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/331 (23%), Positives = 142/331 (42%), Gaps = 47/331 (14%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           AT +  AL    +      G ++H +  K G + +  +   L+ ++ KCG      ++FD
Sbjct: 157 ATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDMYGKCGQAAEVVRVFD 216

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN-- 162
           E     +++ N +IAG  +N QV E+L L ++ V  G   +  +++ I+    CC  N  
Sbjct: 217 ESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSWTSIV---ACCVQNGK 273

Query: 163 --------------------VPLPRNL-----------GRMVHAQILKCDVKADDVLYTA 191
                               V +P  L           GR  H   L+     D  + +A
Sbjct: 274 DLEAVEFFREMQAQGTEPNSVTIPCVLPAFANVAALMHGRSAHCFALRKGFLHDVYVSSA 333

Query: 192 LVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV----EKD 247
           LVD Y K G+   ARI+FD M+ +NV+   +MI G+   G   +A  +F   +    + D
Sbjct: 334 LVDMYAKCGRVKDARIIFDTMVSRNVVSWNAMIGGYAMYGEAVNAVWMFHSMLKCKQKPD 393

Query: 248 IVVYNAMIEGYSIS--IETARKAL-EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDAR 304
           +V +  ++   + +   E  R    E+H +   +   E     + +V +  + GK+D+A 
Sbjct: 394 MVTFTCLLAACTQAGLTEEGRHYFKEMHNEYGVSPRMEHY---ACMVTLLGRAGKLDEAY 450

Query: 305 RVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQA 334
            +   M  + + + W S++     +GN + A
Sbjct: 451 DLISDMPFEPDAYIWGSLLGSCRVHGNVDLA 481



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/264 (24%), Positives = 116/264 (43%), Gaps = 46/264 (17%)

Query: 157 TCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM--LE 214
           T  +S   LP  L R +HA      +  D  + ++L+ +Y++ G T  AR +FD M   +
Sbjct: 25  TAFKSCPTLP--LARALHAVAEVSGLARDPFVASSLLHAYLRLGTTGNARALFDGMPRPQ 82

Query: 215 KNVICSTSMISGFMSQGFVEDA----EEIFRK-TVEKDIVVYNAMIEGYSISIETARKAL 269
           + V+  +++++   ++G  E A    EE+ R   VE +++ +N ++ G + S   AR A+
Sbjct: 83  RTVVGWSALVAAHAARGDAEGAWRLLEEMRRDGGVEPNVITWNGLVSGLNRS-GRARDAV 141

Query: 270 ------------------------------------EVHCQLIKNVFFEDVKLGSALVDM 293
                                               ++H   +K     D  + +AL+DM
Sbjct: 142 VALATMHGEGLLRPDATGVSCALSAVGDVGLVSVGQQLHGYAVKAGCRADACVVTALIDM 201

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           Y KCG+  +  RVFD     +V +  ++I G  +N    +AL LF    +  V+ N V++
Sbjct: 202 YGKCGQAAEVVRVFDESSHMDVASCNALIAGLSRNAQVCEALRLFKEFVDRGVELNVVSW 261

Query: 354 LGALSACGHAGLVDKGREIFESME 377
              ++ C   G   +  E F  M+
Sbjct: 262 TSIVACCVQNGKDLEAVEFFREMQ 285


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 150/444 (33%), Positives = 252/444 (56%), Gaps = 13/444 (2%)

Query: 62  FYGLKI-HAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120
           F G K+ H+   K  ++ +  ++  L+ ++ + G+L+ A ++F+E+P +    +  MI G
Sbjct: 129 FQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKG 188

Query: 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
           +L   +      L  ++  SG   D +    +++A      NV   +  G+  H   +K 
Sbjct: 189 HLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQAC----GNVYAGKE-GKTFHGLCIKK 243

Query: 181 D-VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
           + + ++  L T+LVD Y+K G   +A  +F+ +  ++V+  +++I+GF   G   ++  +
Sbjct: 244 NFIDSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISM 303

Query: 240 FRK----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
           FR+    +V  + V + +++   S S+ + ++   VH  +I+N    DVK  ++ +DMYA
Sbjct: 304 FRQMLADSVTPNSVTFASIVLACS-SLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYA 362

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KCG I  A RVF  + +KNVF+W++MI+G+G +G   +AL LF  M+     PN VTF+ 
Sbjct: 363 KCGCIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVS 422

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            LSAC H+G +++G   F+SM RDY + P  EHYACMVDLLGRAG +++AL F+  MP +
Sbjct: 423 VLSACSHSGRIEEGWSHFKSMSRDYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTE 482

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
           P +  W ALL +CR+H   E+A   A ++  L + D+ G YV LSN  A  G W+ V + 
Sbjct: 483 PGASAWGALLGACRIHRRAELAEEVAKKLLPLES-DQSGVYVMLSNIYADVGMWEMVKKT 541

Query: 476 REKMKLRGVLKDTGCSWVGTESGL 499
           R KM  +G+ K  G + +  E  L
Sbjct: 542 RLKMCEKGIHKIVGFTSIEIEEKL 565



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 74/156 (47%), Gaps = 2/156 (1%)

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
           +++ Q++ N     +  G  +   Y + G +  A + F+H+  +N+ +W +++  + KN 
Sbjct: 33  QLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNK 92

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
                L+LF  M +     +    + A+ AC    L  +G ++F S+     ++      
Sbjct: 93  CFYDVLQLFKRMLKEGKLVDSFNLVFAVKACFGLSLF-QGAKLFHSLAIKLRLEGDPYVA 151

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
             ++++    GSLE+A K   E+P K NS +W  ++
Sbjct: 152 PALMNVYTELGSLEEAHKVFEEVPLK-NSVIWGVMI 186


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 142/435 (32%), Positives = 241/435 (55%), Gaps = 17/435 (3%)

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           L +H +  K G+     +   L+ ++ K G L+ A  +F  +  R L  +N +I+G  + 
Sbjct: 189 LVMHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQR 248

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
           GQ   +L + + +  SG  PD    +++  AS   +          + +H  +++     
Sbjct: 249 GQTAAALKMFQGMRGSGVSPD--VLTLVSLASAIAQGG---DGRSAKSLHCYVMRRGWDV 303

Query: 185 DDVLY-TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           DD++   A+VD Y K      A+ +FD M  ++ +   ++I+G+M  G   +A E +   
Sbjct: 304 DDIIAGNAIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHM 363

Query: 244 VEKDIVVYNAMIEGYSISIETA-------RKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
            + + +     I+G  +S+  A       ++ + +H   IK     DV +G+ L+D+YAK
Sbjct: 364 QKHEGL---KAIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLNVDVYVGTCLIDLYAK 420

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CGK+ +A  +F+ M +++   W ++I G G +G+  +AL LF  MQ+  ++P++VTF+  
Sbjct: 421 CGKLAEAMLLFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSL 480

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           L+AC HAGLVD+GR  F+ M+  Y + P  +HYACM D+LGRAG L++A  F+  MP KP
Sbjct: 481 LAACSHAGLVDQGRSFFDVMQVTYDIVPIAKHYACMADMLGRAGQLDEAFNFIQNMPIKP 540

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
           +S VW ALL +CR+H +VEM  +A+  +F+L+  +  G YV +SN  A  GKWD V E+R
Sbjct: 541 DSAVWGALLGACRIHGNVEMGKVASQNLFELDPEN-VGYYVLMSNMYAKVGKWDGVDEVR 599

Query: 477 EKMKLRGVLKDTGCS 491
             ++ + + K  G S
Sbjct: 600 SLVRRQNLQKTPGWS 614



 Score =  140 bits (352), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/373 (26%), Positives = 190/373 (50%), Gaps = 15/373 (4%)

Query: 66  KIHAHITKTG-VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           ++HA   + G V+P+   S  L+  +L+ G +  A ++FDE+ +R + A+N M++G  +N
Sbjct: 88  QLHACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRN 147

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
            +  E++ L  ++V  G   D  T S +L         V     L  ++H   +K  +  
Sbjct: 148 ARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQV-----LALVMHVYAVKHGLDK 202

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR--- 241
           +  +  AL+D Y K G    A+ VF  M  ++++   S+ISG   +G    A ++F+   
Sbjct: 203 ELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMR 262

Query: 242 -KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVF-FEDVKLGSALVDMYAKCGK 299
              V  D++   ++    +   +  R A  +HC +++  +  +D+  G+A+VDMYAK   
Sbjct: 263 GSGVSPDVLTLVSLASAIAQGGD-GRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSN 321

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC-CVQPNYVTFLGALS 358
           I+ A+R+FD M  ++  +W ++I GY +NG  N+A+E +  MQ+   ++    TF+  L 
Sbjct: 322 IEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLP 381

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           A  H G + +G  +  ++     +   +    C++DL  + G L +A+    +MP + ++
Sbjct: 382 AYSHLGALQQGMRM-HALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRR-ST 439

Query: 419 DVWAALLSSCRLH 431
             W A++S   +H
Sbjct: 440 GPWNAIISGLGVH 452



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 161/337 (47%), Gaps = 26/337 (7%)

Query: 115 NYMIAGYLKNGQVEESLSLVRKLVSSGE--RPDGYTFSMILKASTCCRSNVPLPRNLGRM 172
           N +IA + +      +  L+R ++S     RPDG+TF  +++A+    S   L       
Sbjct: 37  NTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAPSNASAAQL------- 89

Query: 173 VHAQILKCDVKADDVLYT-ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
            HA  L+  +    V  + +LV +Y++ G+ S A  VFD M E++V    +M+SG     
Sbjct: 90  -HACALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNA 148

Query: 232 FVEDAEEIFRKTVEK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG 287
              +A  +F + V +    D V  ++++    + +     AL +H   +K+   +++ + 
Sbjct: 149 RAAEAVGLFGRMVGEGVAGDTVTVSSVLP-MCVLLGDQVLALVMHVYAVKHGLDKELFVC 207

Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347
           +AL+D+Y K G +++A+ VF  M+ +++ TW S+I G  + G    AL++F  M+   V 
Sbjct: 208 NALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVS 267

Query: 348 PNYVTFLGALSACGHAGLVDKGREIF-ESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
           P+ +T +   SA    G     + +    M R + +   +   A +VD+  +  ++E A 
Sbjct: 268 PDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNA-IVDMYAKLSNIEAAQ 326

Query: 407 KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANE 443
           +    MP + +S  W  L++         M N  ANE
Sbjct: 327 RMFDSMPVQ-DSVSWNTLITG-------YMQNGLANE 355



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 59/266 (22%), Positives = 117/266 (43%), Gaps = 49/266 (18%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+++HA   K G+  +  +   L+ L+ KCG L  A  +F+++P+R+   +N +I+G   
Sbjct: 392 GMRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIISGLGV 451

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G   E+L+L  ++   G +PD  TF  +L A +                HA ++     
Sbjct: 452 HGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACS----------------HAGLVDQGRS 495

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMM-LEKNVICSTSMI--SGFMSQGFVEDAEEIF 240
             DV+                 ++ +D++ + K+  C   M+  +G + + F      I 
Sbjct: 496 FFDVM-----------------QVTYDIVPIAKHYACMADMLGRAGQLDEAF----NFIQ 534

Query: 241 RKTVEKDIVVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
              ++ D  V+ A++    I  ++E  +    V  Q +  +  E+V     + +MYAK G
Sbjct: 535 NMPIKPDSAVWGALLGACRIHGNVEMGK----VASQNLFELDPENVGYYVLMSNMYAKVG 590

Query: 299 K---IDDARRVFDHMQQKNVFTWTSM 321
           K   +D+ R +      +    W+S+
Sbjct: 591 KWDGVDEVRSLVRRQNLQKTPGWSSI 616


>gi|224031691|gb|ACN34921.1| unknown [Zea mays]
 gi|414879789|tpg|DAA56920.1| TPA: tetratricopeptide-like helical [Zea mays]
          Length = 460

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 135/422 (31%), Positives = 232/422 (54%), Gaps = 38/422 (9%)

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           +P R + +    I    + G+  ++L+L  ++++ G  P+ +TF  +L+++T  R   P 
Sbjct: 1   MPHRDVISATAAIGALTRGGRHRDALALFSRVLADGVAPNEFTFGTVLRSATALRVRAP- 59

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
              +G  +HA   K  + ++  + +AL+D Y K G  + A+   D   E NV+  T++I+
Sbjct: 60  --RVGVQLHACAAKLGLCSNVFVGSALLDHYAKMGAMTEAQRALDDTREPNVVSYTALIA 117

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS----------ISIETARKALE----- 270
           G +  G  ++A+ +FR+  E+++V +NAMI GYS          + +E  R  +      
Sbjct: 118 GLLKNGMFDEADRLFRRMPERNVVSWNAMIGGYSQAGLGEEAVNLFLEMCRGGVSPNEST 177

Query: 271 -------------------VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311
                              +H   IK +   DV +G++LV  YA+CG ++D+   F  + 
Sbjct: 178 FPCVLTSVASAGTLGVGRSIHASAIKFLGKLDVYIGNSLVSFYARCGSLEDSVLAFKKIN 237

Query: 312 QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371
           +KNV +W ++I GY +NG   +AL+ + MM+   ++P+ VT LG L  C H GLVD+G  
Sbjct: 238 RKNVVSWNALICGYAQNGKGEEALDAYRMMRATGLKPDNVTLLGLLFGCNHTGLVDEGYA 297

Query: 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           +F++ ER+     K EHYAC+VDLL RA   ++A +F+ E+P +P    W ALL  C++H
Sbjct: 298 LFKTAEREQPGILKPEHYACVVDLLSRAKRFDEARRFLEELPFEPGIGFWKALLGGCQIH 357

Query: 432 DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
            + ++A   A  I  L+  D   +Y+ LSN  +A+G W SV+ +R ++K +G+ + TGCS
Sbjct: 358 WNSKLAESVAKRIRALDPKD-TSSYILLSNVYSASGSWQSVSMVRWEIKEKGLKRITGCS 416

Query: 492 WV 493
           W+
Sbjct: 417 WI 418



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 70/306 (22%), Positives = 133/306 (43%), Gaps = 51/306 (16%)

Query: 60  TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIA 119
            P  G+++HA   K G+  N  +   LL  + K GA+  A +  D+  +  + +Y  +IA
Sbjct: 58  APRVGVQLHACAAKLGLCSNVFVGSALLDHYAKMGAMTEAQRALDDTREPNVVSYTALIA 117

Query: 120 GYLKNGQVEESLSLVRKL-----VSSGERPDGYTFSMILKAST-----CCRSNVP----- 164
           G LKNG  +E+  L R++     VS      GY+ + + + +       CR  V      
Sbjct: 118 GLLKNGMFDEADRLFRRMPERNVVSWNAMIGGYSQAGLGEEAVNLFLEMCRGGVSPNEST 177

Query: 165 LP-----------RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
            P             +GR +HA  +K   K D  +  +LV  Y + G    + + F  + 
Sbjct: 178 FPCVLTSVASAGTLGVGRSIHASAIKFLGKLDVYIGNSLVSFYARCGSLEDSVLAFKKIN 237

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFR----KTVEKDIVVYNAMI----------EGYS 259
            KNV+   ++I G+   G  E+A + +R      ++ D V    ++          EGY+
Sbjct: 238 RKNVVSWNALICGYAQNGKGEEALDAYRMMRATGLKPDNVTLLGLLFGCNHTGLVDEGYA 297

Query: 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ-QKNVFTW 318
           +  +TA +       ++K   +      + +VD+ ++  + D+ARR  + +  +  +  W
Sbjct: 298 L-FKTAERE---QPGILKPEHY------ACVVDLLSRAKRFDEARRFLEELPFEPGIGFW 347

Query: 319 TSMIDG 324
            +++ G
Sbjct: 348 KALLGG 353



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 57/108 (52%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
           ++ P  L    ++ T   G  IHA   K   K +  I   L+  + +CG+L+ +   F +
Sbjct: 176 STFPCVLTSVASAGTLGVGRSIHASAIKFLGKLDVYIGNSLVSFYARCGSLEDSVLAFKK 235

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
           + ++ + ++N +I GY +NG+ EE+L   R + ++G +PD  T   +L
Sbjct: 236 INRKNVVSWNALICGYAQNGKGEEALDAYRMMRATGLKPDNVTLLGLL 283


>gi|226501952|ref|NP_001151797.1| tetratricopeptide-like helical [Zea mays]
 gi|195649749|gb|ACG44342.1| tetratricopeptide-like helical [Zea mays]
          Length = 460

 Score =  253 bits (646), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 134/422 (31%), Positives = 232/422 (54%), Gaps = 38/422 (9%)

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           +P R + +    I    + G+  ++L+L  ++++ G  P+ +TF  +L+++T  R   P 
Sbjct: 1   MPHRDVISATAAIGALTRGGRHRDALALFSRVLAGGVAPNEFTFGTVLRSATALRVRAP- 59

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
              +G  +HA   K  + ++  + +AL+D Y K G  + A+   D   E NV+  T++I+
Sbjct: 60  --RVGVQLHACAAKLGLCSNVFVGSALLDHYAKMGAMTEAQRALDDTREPNVVSYTALIA 117

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS----------ISIETARKALE----- 270
           G +  G  ++A+ +FR+  E+++V +NAMI GYS          + +E  R  +      
Sbjct: 118 GLLKNGMFDEADRLFRRMPERNVVSWNAMIGGYSQAGLGEEAVNLFLEMCRGGVSPNEST 177

Query: 271 -------------------VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311
                              +H   IK +   DV +G++LV  YA+CG ++D+   F  + 
Sbjct: 178 FPCVLTSVASAGTLGVGRSIHASAIKFLGKLDVYIGNSLVSFYARCGSLEDSVLAFKKIN 237

Query: 312 QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371
           +KNV +W ++I GY +NG   +AL+ + MM+   ++P+ +T LG L  C H GLVD+G  
Sbjct: 238 RKNVVSWNALICGYAQNGKGEEALDAYRMMRATGLKPDNLTLLGLLFGCNHTGLVDEGYA 297

Query: 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           +F++ ER+     K EHYAC+VDLL RA   ++A +F+ E+P +P    W ALL  C++H
Sbjct: 298 LFKTAEREQPGILKPEHYACVVDLLSRAKRFDEARRFLEELPFEPGIGFWKALLGGCQIH 357

Query: 432 DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
            + ++A   A  I  L+  D   +Y+ LSN  +A+G W SV+ +R ++K +G+ + TGCS
Sbjct: 358 WNSKLAESVAKRIRALDPKD-TSSYILLSNVYSASGSWQSVSMVRREIKEKGLKRITGCS 416

Query: 492 WV 493
           W+
Sbjct: 417 WI 418



 Score = 68.6 bits (166), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 69/306 (22%), Positives = 130/306 (42%), Gaps = 51/306 (16%)

Query: 60  TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIA 119
            P  G+++HA   K G+  N  +   LL  + K GA+  A +  D+  +  + +Y  +IA
Sbjct: 58  APRVGVQLHACAAKLGLCSNVFVGSALLDHYAKMGAMTEAQRALDDTREPNVVSYTALIA 117

Query: 120 GYLKNGQVEESLSLVRKL-----VSSGERPDGYTFSMILKAST-----CCRSNVP----- 164
           G LKNG  +E+  L R++     VS      GY+ + + + +       CR  V      
Sbjct: 118 GLLKNGMFDEADRLFRRMPERNVVSWNAMIGGYSQAGLGEEAVNLFLEMCRGGVSPNEST 177

Query: 165 LP-----------RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
            P             +GR +HA  +K   K D  +  +LV  Y + G    + + F  + 
Sbjct: 178 FPCVLTSVASAGTLGVGRSIHASAIKFLGKLDVYIGNSLVSFYARCGSLEDSVLAFKKIN 237

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMI--------------EGYS 259
            KNV+   ++I G+   G  E+A + +R      +   N  +              EGY+
Sbjct: 238 RKNVVSWNALICGYAQNGKGEEALDAYRMMRATGLKPDNLTLLGLLFGCNHTGLVDEGYA 297

Query: 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ-QKNVFTW 318
           +  +TA +       ++K   +      + +VD+ ++  + D+ARR  + +  +  +  W
Sbjct: 298 L-FKTAERE---QPGILKPEHY------ACVVDLLSRAKRFDEARRFLEELPFEPGIGFW 347

Query: 319 TSMIDG 324
            +++ G
Sbjct: 348 KALLGG 353



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/108 (27%), Positives = 57/108 (52%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
           ++ P  L    ++ T   G  IHA   K   K +  I   L+  + +CG+L+ +   F +
Sbjct: 176 STFPCVLTSVASAGTLGVGRSIHASAIKFLGKLDVYIGNSLVSFYARCGSLEDSVLAFKK 235

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
           + ++ + ++N +I GY +NG+ EE+L   R + ++G +PD  T   +L
Sbjct: 236 INRKNVVSWNALICGYAQNGKGEEALDAYRMMRATGLKPDNLTLLGLL 283


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 147/434 (33%), Positives = 237/434 (54%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH  + K     +  I + L+ ++ K   L  A ++FD +  R L   N +I+G   
Sbjct: 322 GRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSH 381

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G+ +E+LSL  +L   G   +  T + +LK++    +      +  R VHA  +K    
Sbjct: 382 GGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEA-----ASTTRQVHALAVKIGFI 436

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF----MSQGFVEDAEEI 239
            D  +   L+DSY K    S A  VF+     ++I  TSMI+        +G ++   E+
Sbjct: 437 FDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEM 496

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            RK +E D  V ++++   + S+    +  +VH  LIK  F  D   G+ALV  YAKCG 
Sbjct: 497 LRKGLEPDPFVLSSLLNACA-SLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGS 555

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I+DA   F  + ++ V +W++MI G  ++G+  +ALELF  M +  + PN++T    L A
Sbjct: 556 IEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCA 615

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C HAGLVD+ +  F SM+  + +    EHY+CM+DLLGRAG L+ A++ V  MP + N+ 
Sbjct: 616 CNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANAS 675

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +W ALL + R+H D E+  +AA ++F L   ++ G +V L+NT A+AG W+ V ++R+ M
Sbjct: 676 IWGALLGASRVHKDPELGKLAAEKLFILEP-EKSGTHVLLANTYASAGMWNEVAKVRKLM 734

Query: 480 KLRGVLKDTGCSWV 493
           K   + K+   SW+
Sbjct: 735 KDSNIKKEPAMSWI 748



 Score =  139 bits (351), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/456 (24%), Positives = 207/456 (45%), Gaps = 42/456 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA + + G   +   +  L+ +++K G +  A  +F+++P   + ++N +I+G + 
Sbjct: 221 GRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVL 280

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG    ++ L+ ++  SG  P+ +T S ILKA +   +      +LGR +H  ++K +  
Sbjct: 281 NGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGA-----FDLGRQIHGFMIKANAD 335

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +DD +   LVD Y K      AR VFD M  +++I   ++ISG    G  ++A  +F + 
Sbjct: 336 SDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYEL 395

Query: 244 VEKDIVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
            ++ + V     A +   + S+E A    +VH   +K  F  D  + + L+D Y KC  +
Sbjct: 396 RKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCL 455

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
            DA RVF+     ++   TSMI    +  +   A++LF  M    ++P+       L+AC
Sbjct: 456 SDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNAC 515

Query: 361 GHAGLVDKGREI----------------------------FESMERDYSMKPK--MEHYA 390
                 ++G+++                             E  E  +S  P+  +  ++
Sbjct: 516 ASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWS 575

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEK---PNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
            M+  L + G  ++AL+    M ++   PN     ++L +C     V+ A    N + ++
Sbjct: 576 AMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEM 635

Query: 448 NANDRPGA-YVALSNTLAAAGKWDSVTELREKMKLR 482
              DR    Y  + + L  AGK D   EL   M  +
Sbjct: 636 FGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQ 671



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 155/338 (45%), Gaps = 24/338 (7%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           +A ++   L  Y  +     G  +HA + K+G     +    L+  + KC     A ++F
Sbjct: 3   SAGTISQQLTRYAAAQALLPGAHLHASLLKSG--SLASFRNHLISFYSKCRRPCCARRVF 60

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           DE+P     +++ ++  Y  NG    ++     + + G   + +   ++LK        V
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC-------V 113

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM-LEKNVICSTS 222
           P  R LG  VHA  +     +D  +  ALV  Y   G    AR VF+    E+N +    
Sbjct: 114 PDAR-LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNG 172

Query: 223 MISGFMSQGFVEDAEEIFRKTVEKDI--------VVYNAMIEGYSISIETARKALEVHCQ 274
           ++S ++      DA ++F + V   I         V NA     S +IE  R   +VH  
Sbjct: 173 LMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTG--SRNIEAGR---QVHAM 227

Query: 275 LIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQA 334
           +++  + +DV   +ALVDMY K G++D A  +F+ M   +V +W ++I G   NG+ ++A
Sbjct: 228 VVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRA 287

Query: 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           +EL   M+   + PN  T    L AC  AG  D GR+I
Sbjct: 288 IELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQI 325



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/268 (27%), Positives = 122/268 (45%), Gaps = 11/268 (4%)

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           G  +HA +LK    A       L+  Y K  +   AR VFD + +   +  +S+++ + +
Sbjct: 23  GAHLHASLLKSGSLAS--FRNHLISFYSKCRRPCCARRVFDEIPDPCHVSWSSLVTAYSN 80

Query: 230 QGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSA 289
            G    A + F     + +      +      +  AR   +VH   +   F  DV + +A
Sbjct: 81  NGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARLGAQVHAMAMATGFGSDVFVANA 140

Query: 290 LVDMYAKCGKIDDARRVFDHM-QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348
           LV MY   G +DDARRVF+    ++N  +W  ++  Y KN     A+++F  M    +QP
Sbjct: 141 LVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQP 200

Query: 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKF 408
               F   ++AC  +  ++ GR++   + R    K      A +VD+  + G ++ A   
Sbjct: 201 TEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANA-LVDMYMKMGRVDIASVI 259

Query: 409 VLEMPEKPNSDV--WAALLSSCRL--HD 432
             +MP+   SDV  W AL+S C L  HD
Sbjct: 260 FEKMPD---SDVVSWNALISGCVLNGHD 284



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 129/291 (44%), Gaps = 10/291 (3%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
           T+L + L+   + +      ++HA   K G   + ++   L+  + KC  L  A ++F+E
Sbjct: 405 TTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEE 464

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
                + A   MI    +    E ++ L  +++  G  PD +  S +L A   C S    
Sbjct: 465 CSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNA---CASLSAY 521

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
            +  G+ VHA ++K    +D     ALV +Y K G    A + F  + E+ V+  ++MI 
Sbjct: 522 EQ--GKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIG 579

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV--HCQLIKNVFFED 283
           G    G  + A E+F + V++ I   +  +     +   A    E   +   +K +F  D
Sbjct: 580 GLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGID 639

Query: 284 V--KLGSALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNP 331
              +  S ++D+  + GK+DDA  + + M  Q N   W +++     + +P
Sbjct: 640 RTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDP 690


>gi|147812499|emb|CAN61868.1| hypothetical protein VITISV_002466 [Vitis vinifera]
          Length = 440

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 132/317 (41%), Positives = 198/317 (62%), Gaps = 8/317 (2%)

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT-- 243
           +++  ALVD Y K G   YA  VF+ M +K+VI  TS+++G +  G  E+A  +F +   
Sbjct: 2   ELVNNALVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRI 61

Query: 244 --VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
             +  D +V  A++   +  +       +VH   +K+     + + ++LV MYAKCG I+
Sbjct: 62  MGIHPDQIVIAAVLSACA-ELTVLEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIE 120

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           DA +VFD M+ ++V TWT++I GY +NG   ++L  +  M    V+P+++TF+G L AC 
Sbjct: 121 DANKVFDSMEIQDVITWTALIVGYAQNGRGRESLNFYNBMIASGVKPDFITFIGLLFACS 180

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
           HAGLV+ GR  F+SME  Y +KP  EHYACM+DLLGR+G L +A + + +M  +P++ VW
Sbjct: 181 HAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLNQMAVQPDATVW 240

Query: 422 AALLSSCRLHDDVEMANIAANEIFKLN-ANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
            ALL++CR+H +VE+   AAN +F+L   N  P  YV LSN  +AAGKW+   + R  MK
Sbjct: 241 KALLAACRVHGNVELGERAANNLFELEPKNAVP--YVLLSNLYSAAGKWEEAAKTRRLMK 298

Query: 481 LRGVLKDTGCSWVGTES 497
           LRGV K+ GCSW+   S
Sbjct: 299 LRGVSKEPGCSWIEMSS 315



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 77/328 (23%), Positives = 135/328 (41%), Gaps = 49/328 (14%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           L+ ++ K G   YA  +F+++  + + ++  ++ G + NG  EE+L L  ++   G  PD
Sbjct: 8   LVDMYAKXGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEEALRLFCEMRIMGIHPD 67

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
               + +L  S C    V      G+ VHA  LK  + +   +  +LV  Y K G    A
Sbjct: 68  QIVIAAVL--SACAELTV---LEFGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDA 122

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETA 265
             VFD M  ++VI  T++I G+   G                                  
Sbjct: 123 NKVFDSMEIQDVITWTALIVGYAQNG--------------------------------RG 150

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT-----WTS 320
           R++L  +  +I +    D      L+   +  G ++  R  F  M++          +  
Sbjct: 151 RESLNFYNBMIASGVKPDFITFIGLLFACSHAGLVEHGRSYFQSMEEVYGIKPGPEHYAC 210

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
           MID  G++G   +A EL   + +  VQP+   +   L+AC   G V+ G     ++   +
Sbjct: 211 MIDLLGRSGKLMEAKEL---LNQMAVQPDATVWKALLAACRVHGNVELGERAANNL---F 264

Query: 381 SMKPKME-HYACMVDLLGRAGSLEQALK 407
            ++PK    Y  + +L   AG  E+A K
Sbjct: 265 ELEPKNAVPYVLLSNLYSAAGKWEEAAK 292



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 58/95 (61%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G ++HA+  K+G+  + ++   L+ ++ KCG ++ A ++FD +  + +  +  +I GY 
Sbjct: 86  FGKQVHANFLKSGLGSSLSVDNSLVSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYA 145

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           +NG+  ESL+    +++SG +PD  TF  +L A +
Sbjct: 146 QNGRGRESLNFYNBMIASGVKPDFITFIGLLFACS 180


>gi|297810761|ref|XP_002873264.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319101|gb|EFH49523.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 624

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 153/482 (31%), Positives = 250/482 (51%), Gaps = 50/482 (10%)

Query: 56  INSDTPFYGLKI-HAHITKTGVKPNTNISIKLLIL---------HLKCGALKYAGQMFDE 105
           + S + F  LKI H  + +T +  +  ++ +LL L         H     L YA  +F +
Sbjct: 19  LQSCSSFSDLKIIHGFLLRTHLISDVFVASRLLALALCVDDSTFHKPTNLLGYAYGIFSQ 78

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           +    L  +N +I  +    +  ++     +++ S   PD  TF  ++KAST     V  
Sbjct: 79  IQNPNLFVFNVLIRCFSTGAEPSKAFGFYTQMLKSRIWPDNITFPFLIKASTEMECVV-- 136

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
              +G   H+QI++   + D  +  +LV  Y   G  + A  +F  M  ++V+  TSM++
Sbjct: 137 ---VGEQTHSQIVRFGFQNDVYVENSLVHMYANCGLIAAAGRIFGQMPFRDVVSWTSMVA 193

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS-------------------------- 259
           G+   G VEDA E+F +   +++  ++ MI GY+                          
Sbjct: 194 GYCKCGMVEDAREMFDEMPHRNLFTWSIMINGYAKNNCFEKAIDLFELMKREGVVANETV 253

Query: 260 ----ISIETARKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311
               IS      ALE     H  ++K+    ++ LG+ALVDMY +CG+I+ A RVF+ + 
Sbjct: 254 MVSVISSCAHLGALEFGERAHEYVVKSHMTVNLILGTALVDMYWRCGEIEKAIRVFEELP 313

Query: 312 QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371
            K+  +W+S+I G   +G+ ++A+  F  M      P  +T    LSAC H GLVDKG E
Sbjct: 314 DKDSLSWSSIIKGLAVHGHAHKAIHYFSQMVRLGFSPRDITLTAVLSACSHGGLVDKGLE 373

Query: 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           I+E+M+RDY ++P++EHY C+VD+LGRAG L +A  F+L+MP KPN+ +  ALL +C+++
Sbjct: 374 IYENMKRDYGIEPRLEHYGCIVDMLGRAGKLAEAENFILKMPVKPNAPILGALLGACKIY 433

Query: 432 DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
            + E+A    N + ++   +  G YV LSN  A AG+W+ +  LR+ MK + V K  G S
Sbjct: 434 KNTEVAERVGNMLIEVKP-EHSGYYVLLSNIYACAGQWEKLESLRDIMKEKLVKKPPGWS 492

Query: 492 WV 493
            +
Sbjct: 493 LI 494


>gi|356568696|ref|XP_003552546.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g29230-like [Glycine max]
          Length = 604

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 169/514 (32%), Positives = 267/514 (51%), Gaps = 51/514 (9%)

Query: 2   PNLSRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNY--DSLSNP--LTATSLPSALQHYIN 57
           PN+    S + +  HN  +  +P N  F  +      D+ + P  L A S PS+L     
Sbjct: 82  PNVHLYNSIIRAHAHNSSHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSL----- 136

Query: 58  SDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG--ALKYAGQMFDELPQRTLSAYN 115
              P   + IHAH+ K G   +  +   L+  + +CG   L  A  +F  + +R +  +N
Sbjct: 137 ---PLVRM-IHAHVEKIGFYGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWN 192

Query: 116 YMIAGYLKNGQVEESLSLV-----RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLG 170
            MI G ++ G+++ +  L      R +VS     DGY  +  +  +      +P  RN+ 
Sbjct: 193 SMIGGLVRCGELQGACKLFDEMPDRDMVSWNTMLDGYAKAGEMDTAFELFERMPW-RNI- 250

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
                           V ++ +V  Y KGG    AR++FD    KNV+  T++I+G+  +
Sbjct: 251 ----------------VSWSTMVCGYSKGGDMDMARMLFDRCPVKNVVLWTTIIAGYAEK 294

Query: 231 GFVEDAEEIFRKTVEKDIVVYNAMIEGYSISI-----ETARKAL--EVHCQLIKNVFFED 283
           G   +A E++ K  E  +       +G+ +SI     E+    L   +H  + +  F   
Sbjct: 295 GLAREATELYGKMEEAGM----RPDDGFLLSILAACAESGMLGLGKRIHASMRRWRFRCG 350

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
            K+ +A +DMYAKCG +D A  VF  M  +K+V +W SMI G+  +G+  +ALELF  M 
Sbjct: 351 AKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWNSMIQGFAMHGHGEKALELFSWMV 410

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
           +   +P+  TF+G L AC HAGLV++GR+ F SME+ Y + P++EHY CM+DLLGR G L
Sbjct: 411 QEGFEPDTYTFVGLLCACTHAGLVNEGRKYFYSMEKVYGIVPQVEHYGCMMDLLGRGGHL 470

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
           ++A   +  MP +PN+ +   LL++CR+H+DV++A     ++FKL  +D PG Y  LSN 
Sbjct: 471 KEAFMLLRSMPMEPNAIILGTLLNACRMHNDVDLARAVCEQLFKLEPSD-PGNYSLLSNI 529

Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
            A AG W +V  +R +MK  G  K +G S +  E
Sbjct: 530 YAQAGDWMNVANVRLQMKNTGGEKPSGASSIEVE 563



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 102/375 (27%), Positives = 184/375 (49%), Gaps = 14/375 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IHA + K  +  +  ++ KL+     C  L  A  +F+ +P   +  YN +I  +  N 
Sbjct: 39  QIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNS 98

Query: 126 QVEE-SLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
                  +   ++  +G  PD +T+  +LKA   C     LP  L RM+HA + K     
Sbjct: 99  SHRSLPFNAFFQMQKNGLFPDNFTYPFLLKA---CSGPSSLP--LVRMIHAHVEKIGFYG 153

Query: 185 DDVLYTALVDSYVKGGKTSY--ARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           D  +  +L+DSY + G      A  +F  M E++V+   SMI G +  G ++ A ++F +
Sbjct: 154 DIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEERDVVTWNSMIGGLVRCGELQGACKLFDE 213

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
             ++D+V +N M++GY+ + E     ++   +L + + + ++   S +V  Y+K G +D 
Sbjct: 214 MPDRDMVSWNTMLDGYAKAGE-----MDTAFELFERMPWRNIVSWSTMVCGYSKGGDMDM 268

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
           AR +FD    KNV  WT++I GY + G   +A EL+  M+E  ++P+    L  L+AC  
Sbjct: 269 ARMLFDRCPVKNVVLWTTIIAGYAEKGLAREATELYGKMEEAGMRPDDGFLLSILAACAE 328

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
           +G++  G+ I  SM R +  +   +     +D+  + G L+ A      M  K +   W 
Sbjct: 329 SGMLGLGKRIHASMRR-WRFRCGAKVLNAFIDMYAKCGCLDAAFDVFSGMMAKKDVVSWN 387

Query: 423 ALLSSCRLHDDVEMA 437
           +++    +H   E A
Sbjct: 388 SMIQGFAMHGHGEKA 402



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 48/225 (21%), Positives = 97/225 (43%), Gaps = 21/225 (9%)

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
           ++H Q++K    +D+ +   L+  ++ C  +  A  VF+H+   NV  + S+I  +  N 
Sbjct: 39  QIHAQVLKANLHQDLFVAPKLIAAFSLCRHLASAVNVFNHVPHPNVHLYNSIIRAHAHNS 98

Query: 330 NPNQ-ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           +        F  MQ+  + P+  T+   L AC     +   R I   +E       K+  
Sbjct: 99  SHRSLPFNAFFQMQKNGLFPDNFTYPFLLKACSGPSSLPLVRMIHAHVE-------KIGF 151

Query: 389 YA------CMVDLLGRAGS--LEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIA 440
           Y        ++D   R G+  L+ A+   L M E+ +   W +++       +++     
Sbjct: 152 YGDIFVPNSLIDSYSRCGNAGLDGAMSLFLAMEER-DVVTWNSMIGGLVRCGELQ----G 206

Query: 441 ANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485
           A ++F    +    ++  + +  A AG+ D+  EL E+M  R ++
Sbjct: 207 ACKLFDEMPDRDMVSWNTMLDGYAKAGEMDTAFELFERMPWRNIV 251


>gi|115475551|ref|NP_001061372.1| Os08g0249600 [Oryza sativa Japonica Group]
 gi|113623341|dbj|BAF23286.1| Os08g0249600 [Oryza sativa Japonica Group]
          Length = 951

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 148/422 (35%), Positives = 219/422 (51%), Gaps = 39/422 (9%)

Query: 108 QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR 167
           +R+   +N +I     + +   +L L   L+ +G  P  +T   +LK S      VP  R
Sbjct: 168 RRSADLHNALIRALAGSARPHLALPLYAHLLRAGHHPTPHTLPSLLK-SLALSPAVPGAR 226

Query: 168 NLGRMVHAQ--------------------------------ILKCDVKADDVLYTALVDS 195
            L   VHA                                 +L+     D   +  L+ +
Sbjct: 227 GLALAVHAHAVKLGLAGFLLVSNALIRVHAGILGRLSDALVLLRTAASVDASTFNTLITA 286

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVY 251
           Y + G+ + AR +FD M  +N +  ++M++G++  G   +A  +F +     V  D  V 
Sbjct: 287 YARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREALGLFARMQADGVRPDDTVL 346

Query: 252 NAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311
             ++   +  +    +   VH  L  N     V LG+ALVDMYAKCG++  A  VF  M+
Sbjct: 347 VGVLAACA-QLGVLEQGKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMK 405

Query: 312 QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371
           +KNV  WT+MI G   +G  ++ALELF  M+   V+P+ + F+GAL AC H GLVDKGRE
Sbjct: 406 EKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKPDDIAFIGALCACTHTGLVDKGRE 465

Query: 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           +F+SM R Y +KPK+EHY CMVDLL R G L +A + V +MP KP++ +W AL++ CR H
Sbjct: 466 LFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFH 525

Query: 432 DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
            +VE+A        +L   D+ GAYV L N  AA+G+  S  E+R  M+ +GV K  GCS
Sbjct: 526 KNVELAEYVVKHWIELEP-DKSGAYVLLGNIYAASGRHASAREIRHLMREKGVDKTPGCS 584

Query: 492 WV 493
            V
Sbjct: 585 TV 586



 Score = 92.0 bits (227), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 124/262 (47%), Gaps = 16/262 (6%)

Query: 71  ITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEES 130
           + +T    + +    L+  + + G +  A  +FDE+P R   +++ M+ GY++ G   E+
Sbjct: 268 LLRTAASVDASTFNTLITAYARAGRVTDARALFDEMPARNAVSWSAMVNGYVQAGDGREA 327

Query: 131 LSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT 190
           L L  ++ + G RPD      +L A  C +  V      G+ VH  +   +++    L T
Sbjct: 328 LGLFARMQADGVRPDDTVLVGVLAA--CAQLGV---LEQGKWVHGYLKANNIRITVFLGT 382

Query: 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEK 246
           ALVD Y K G+   A  VF +M EKNV+  T+MI G    G   +A E+F    R  V+ 
Sbjct: 383 ALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAMHGRGSEALELFSQMERLGVKP 442

Query: 247 DIVVYNAMIEGYSISIETA--RKALEVHCQLIKNVFFE-DVKLGSALVDMYAKCGKIDDA 303
           D +   A I        T    K  E+   +++    +  ++    +VD+ A+ G +++A
Sbjct: 443 DDI---AFIGALCACTHTGLVDKGRELFDSMVRKYGIKPKIEHYGCMVDLLARNGLLNEA 499

Query: 304 RRVFDHMQQK-NVFTWTSMIDG 324
           R + + M  K +   W +++ G
Sbjct: 500 REMVEKMPMKPDALIWGALMAG 521



 Score = 53.1 bits (126), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/183 (20%), Positives = 84/183 (45%), Gaps = 5/183 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H ++    ++    +   L+ ++ KCG ++ A ++F  + ++ + A+  MI G   
Sbjct: 362 GKWVHGYLKANNIRITVFLGTALVDMYAKCGEMQLAMEVFKVMKEKNVLAWTTMIKGLAM 421

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G+  E+L L  ++   G +PD   F      + C  ++  L      +  + + K  +K
Sbjct: 422 HGRGSEALELFSQMERLGVKPDDIAFI----GALCACTHTGLVDKGRELFDSMVRKYGIK 477

Query: 184 ADDVLYTALVDSYVKGGKTSYAR-IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
                Y  +VD   + G  + AR +V  M ++ + +   ++++G      VE AE + + 
Sbjct: 478 PKIEHYGCMVDLLARNGLLNEAREMVEKMPMKPDALIWGALMAGCRFHKNVELAEYVVKH 537

Query: 243 TVE 245
            +E
Sbjct: 538 WIE 540


>gi|224069701|ref|XP_002303023.1| predicted protein [Populus trichocarpa]
 gi|222844749|gb|EEE82296.1| predicted protein [Populus trichocarpa]
          Length = 621

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 163/518 (31%), Positives = 256/518 (49%), Gaps = 89/518 (17%)

Query: 23  VPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYI--------NSDTPFYGLKIHAHITKT 74
           +PPN    PK              + P+  +H+I        N+  P     I+A I + 
Sbjct: 17  LPPNSGTKPK--------------NTPNRRRHFISLLQNCKHNNQIP----PIYAKIIRN 58

Query: 75  GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV 134
               +  +  +LL +     ++ YA ++F       +  Y  +I G + +    + + L 
Sbjct: 59  HHHQDPFVVFELLRVCSNLNSIGYASKIFSHTQNPNVYLYTALIDGLVLSCYYTDGIHLY 118

Query: 135 RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVD 194
            ++++S   PD Y  + +LKA  C      L    GR VH+Q+LK  + ++  +   L++
Sbjct: 119 YQMINSSLVPDSYAVTSVLKACGC-----HLALKEGREVHSQVLKLGLSSNRSIRIKLIE 173

Query: 195 SYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAM 254
            Y K G    AR VFD M E++V+ ST MI+ +   G              KD V + AM
Sbjct: 174 LYGKCGAFEDARRVFDEMPERDVVASTVMINYYFDHGI-------------KDTVCWTAM 220

Query: 255 IEGYSISIETARKALEVHCQLIKNVFFEDVK----------------------------- 285
           I+G   + E+ R ALEV     +N+  EDV                              
Sbjct: 221 IDGLVRNGESNR-ALEV----FRNMQREDVMPNEVTIVCVLSACSELGALQLGRWVRSYM 275

Query: 286 ----------LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
                     +G AL++MY++CG ID+A+RVF+ M++KNV T+ SMI G+  +G   +A+
Sbjct: 276 DKHRIELNHFVGGALINMYSRCGDIDEAQRVFEQMKEKNVITYNSMIMGFALHGKSVEAV 335

Query: 336 ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDL 395
           ELF  + +    P+ VTF+G L+AC H GL + G EIF SM +DY ++P++EHY CMVDL
Sbjct: 336 ELFRGLIKQGFTPSSVTFVGVLNACSHGGLAELGFEIFHSMAKDYGIEPQIEHYGCMVDL 395

Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA 455
           LGR G LE+A  F+  M   P+  +  ALLS+C++H ++E+A   A  +      D  G 
Sbjct: 396 LGRLGRLEEAYSFIRMMKVAPDHVMLGALLSACKIHGNLELAERVAKSLVACKNAD-SGT 454

Query: 456 YVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           Y+ LSN  +++GKW    E+R  M+  G+ K+ GCS +
Sbjct: 455 YILLSNAYSSSGKWKEAAEVRTNMREEGIEKEPGCSSI 492


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 147/434 (33%), Positives = 237/434 (54%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH  + K     +  I + L+ ++ K   L  A ++FD +  R L   N +I+G   
Sbjct: 322 GRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSH 381

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G+ +E+LSL  +L   G   +  T + +LK++    +      +  R VHA  +K    
Sbjct: 382 GGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEA-----ASTTRQVHALAVKIGFI 436

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF----MSQGFVEDAEEI 239
            D  +   L+DSY K    S A  VF+     ++I  TSMI+        +G ++   E+
Sbjct: 437 FDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEM 496

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            RK +E D  V ++++   + S+    +  +VH  LIK  F  D   G+ALV  YAKCG 
Sbjct: 497 LRKGLEPDPFVLSSLLNACA-SLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGS 555

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I+DA   F  + ++ V +W++MI G  ++G+  +ALELF  M +  + PN++T    L A
Sbjct: 556 IEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCA 615

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C HAGLVD+ +  F SM+  + +    EHY+CM+DLLGRAG L+ A++ V  MP + N+ 
Sbjct: 616 CNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANAS 675

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +W ALL + R+H D E+  +AA ++F L   ++ G +V L+NT A+AG W+ V ++R+ M
Sbjct: 676 IWGALLGASRVHKDPELGKLAAEKLFILEP-EKSGTHVLLANTYASAGMWNEVAKVRKLM 734

Query: 480 KLRGVLKDTGCSWV 493
           K   + K+   SW+
Sbjct: 735 KDSNIKKEPAMSWI 748



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 111/456 (24%), Positives = 207/456 (45%), Gaps = 42/456 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA + + G   +   +  L+ +++K G +  A  +F+++P   + ++N +I+G + 
Sbjct: 221 GRQVHAMVVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVL 280

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG    ++ L+ ++  SG  P+ +T S ILKA +   +      +LGR +H  ++K +  
Sbjct: 281 NGHDHRAIELLLQMKYSGLVPNVFTLSSILKACSGAGA-----FDLGRQIHGFMIKANAD 335

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +DD +   LVD Y K      AR VFD M  +++I   ++ISG    G  ++A  +F + 
Sbjct: 336 SDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYEL 395

Query: 244 VEKDIVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
            ++ + V     A +   + S+E A    +VH   +K  F  D  + + L+D Y KC  +
Sbjct: 396 RKEGLGVNRTTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCL 455

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
            DA RVF+     ++   TSMI    +  +   A++LF  M    ++P+       L+AC
Sbjct: 456 SDANRVFEECSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNAC 515

Query: 361 GHAGLVDKGREI----------------------------FESMERDYSMKPK--MEHYA 390
                 ++G+++                             E  E  +S  P+  +  ++
Sbjct: 516 ASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWS 575

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEK---PNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
            M+  L + G  ++AL+    M ++   PN     ++L +C     V+ A    N + ++
Sbjct: 576 AMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEM 635

Query: 448 NANDRPGA-YVALSNTLAAAGKWDSVTELREKMKLR 482
              DR    Y  + + L  AGK D   EL   M  +
Sbjct: 636 FGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQ 671



 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 154/338 (45%), Gaps = 24/338 (7%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           +A ++   L  Y  +     G  +HA + K+G     +    L+  + KC     A + F
Sbjct: 3   SAGTISQQLTRYAAAQALLPGAHLHASLLKSG--SLASFRNHLISFYSKCRRPCCARRFF 60

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           DE+P     +++ ++  Y  NG    ++     + + G   + +   ++LK        V
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC-------V 113

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM-LEKNVICSTS 222
           P  R LG  VHA  +     +D  +  ALV  Y   G    AR VF+    E+N +    
Sbjct: 114 PDAR-LGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNG 172

Query: 223 MISGFMSQGFVEDAEEIFRKTVEKDI--------VVYNAMIEGYSISIETARKALEVHCQ 274
           ++S ++      DA ++F + V   I         V NA     S +IE  R   +VH  
Sbjct: 173 LMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTG--SRNIEAGR---QVHAM 227

Query: 275 LIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQA 334
           +++  + +DV   +ALVDMY K G++D A  +F+ M   +V +W ++I G   NG+ ++A
Sbjct: 228 VVRMGYDKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRA 287

Query: 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           +EL   M+   + PN  T    L AC  AG  D GR+I
Sbjct: 288 IELLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQI 325



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 72/268 (26%), Positives = 121/268 (45%), Gaps = 11/268 (4%)

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           G  +HA +LK    A       L+  Y K  +   AR  FD + +   +  +S+++ + +
Sbjct: 23  GAHLHASLLKSGSLAS--FRNHLISFYSKCRRPCCARRFFDEIPDPCHVSWSSLVTAYSN 80

Query: 230 QGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSA 289
            G    A + F     + +      +      +  AR   +VH   +   F  DV + +A
Sbjct: 81  NGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARLGAQVHAMAMATGFGSDVFVANA 140

Query: 290 LVDMYAKCGKIDDARRVFDHM-QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348
           LV MY   G +DDARRVF+    ++N  +W  ++  Y KN     A+++F  M    +QP
Sbjct: 141 LVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEMVWSGIQP 200

Query: 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKF 408
               F   ++AC  +  ++ GR++   + R    K      A +VD+  + G ++ A   
Sbjct: 201 TEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANA-LVDMYMKMGRVDIASVI 259

Query: 409 VLEMPEKPNSDV--WAALLSSCRL--HD 432
             +MP+   SDV  W AL+S C L  HD
Sbjct: 260 FEKMPD---SDVVSWNALISGCVLNGHD 284



 Score = 79.0 bits (193), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 129/291 (44%), Gaps = 10/291 (3%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
           T+L + L+   + +      ++HA   K G   + ++   L+  + KC  L  A ++F+E
Sbjct: 405 TTLAAVLKSTASLEAASTTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEE 464

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
                + A   MI    +    E ++ L  +++  G  PD +  S +L A   C S    
Sbjct: 465 CSSGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNA---CASLSAY 521

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
            +  G+ VHA ++K    +D     ALV +Y K G    A + F  + E+ V+  ++MI 
Sbjct: 522 EQ--GKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIG 579

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV--HCQLIKNVFFED 283
           G    G  + A E+F + V++ I   +  +     +   A    E   +   +K +F  D
Sbjct: 580 GLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGID 639

Query: 284 V--KLGSALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNP 331
              +  S ++D+  + GK+DDA  + + M  Q N   W +++     + +P
Sbjct: 640 RTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASIWGALLGASRVHKDP 690


>gi|224091973|ref|XP_002309422.1| predicted protein [Populus trichocarpa]
 gi|222855398|gb|EEE92945.1| predicted protein [Populus trichocarpa]
          Length = 582

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 152/462 (32%), Positives = 240/462 (51%), Gaps = 25/462 (5%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
            A + P A++       P  G ++H H+ KTG      +   L+ ++ KC  +  A ++F
Sbjct: 9   NAFTFPFAIKSCAALSLPITGKQLHCHVFKTGCLLEPFVQTSLISMYGKCSLIDNARKLF 68

Query: 104 DELPQ-RTLSA-YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161
           DE PQ R L+  YN +++GY  N +V++ + L  ++   G   +G T  M+     C   
Sbjct: 69  DENPQSRKLTVCYNSLLSGYALNSRVKDVVVLFCEMRELGVEINGVT--MLGLVQPC--- 123

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
            +P    LG  VH   +K  +  D  +   L+  YVK G+    R +FD M  K +I   
Sbjct: 124 GIPGNLGLGMCVHGFCVKFGLDMDSSVGNCLLTMYVKSGEIDCGRKLFDEMPRKGLITWN 183

Query: 222 SMISGFMSQGFVEDAEEIFRKTVEKD----------IVVYNAMIEGYSISIETARKALEV 271
           +MI+G+   G   +  E++++   K           ++   A +   S+  E  RK    
Sbjct: 184 AMINGYAQNGLANNVLELYKEMESKGFCPDPLTLVGVLSSCAHLGALSVGKEVERKMEGF 243

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
                   F  +  L +ALV+MYA+CG +  AR +FD M  K+V +WT++I GYG +G  
Sbjct: 244 G-------FSSNPFLNNALVNMYARCGNLKKARDIFDGMPVKSVVSWTAIIGGYGMHGQG 296

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC 391
             A+ LF  M    ++P+   F+  LSAC HAGL +KG + F  MER Y ++P  EHY+C
Sbjct: 297 EVAVGLFDEMIRGGIKPDGTAFVSVLSACSHAGLTNKGLDYFGVMERKYGLRPGAEHYSC 356

Query: 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451
           MVDLLGRAG L +A + +  M  + +  +W ALL +C++H +VE+A +A  ++ +L   +
Sbjct: 357 MVDLLGRAGRLNEARELIESMQVRADGALWGALLGACKIHRNVELAELAFEQVIELEPTN 416

Query: 452 RPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             G YV LSN    AG  + +  +R  M+ R + KD GCS+V
Sbjct: 417 -TGYYVLLSNVYTEAGNLEGILRVRMLMRKRKLKKDPGCSYV 457


>gi|147864762|emb|CAN84062.1| hypothetical protein VITISV_010661 [Vitis vinifera]
          Length = 641

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 143/453 (31%), Positives = 248/453 (54%), Gaps = 17/453 (3%)

Query: 50  SALQHYINSDT----PFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
           S LQH + S         G+  HA I + G++ +T  S  L+ ++ KCG ++ A ++FDE
Sbjct: 48  SELQHLLQSSARNRAAIEGMACHAQIIRVGLRADTITSNMLMNMYSKCGLVESARKLFDE 107

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL--KASTCCRSNV 163
           +P R+L ++N M+  + +NG  E++L L  ++   G     +T S ++   A+ CC    
Sbjct: 108 MPVRSLVSWNTMVGSHTQNGDSEKALVLFMQMQKEGISCSEFTVSSVVCACAAKCCVFEC 167

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
                  + +H   LK  + ++  + TAL+D Y K G    A +VF+ M E++ +  +SM
Sbjct: 168 -------KQLHGFALKTALDSNVFVGTALLDVYAKCGLVKDASLVFECMPERSDVTWSSM 220

Query: 224 ISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE---VHCQLIKNVF 280
           ++G++     E+A  +F +     +      I     +       +E   V   L K   
Sbjct: 221 VAGYVQNELYEEALVLFHRAQAMGLEHNQFTISSALSACAARAALIEGKQVQAVLCKTGI 280

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             ++ + S+L+DMYAKCG I++A  VF  +++KNV  W +M+ G+ ++    +A+  F  
Sbjct: 281 GSNIFVISSLIDMYAKCGIIEEAYIVFSSVEEKNVVLWNAMLSGFSRHVRSLEAMIYFEK 340

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           MQ+  + PN +T++  L+AC H GLV+KGR+ F+ M R +++ P + HY+CMVD+LGRAG
Sbjct: 341 MQQMGICPNEITYISVLTACSHLGLVEKGRKYFDLMIRVHNVSPNVLHYSCMVDILGRAG 400

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
            L +A   +  MP    + +W +LL+SCR++ ++E A +AA  +F++  ++  G +V LS
Sbjct: 401 LLHEAKDLIDRMPFDATASMWGSLLASCRIYRNLEXAEVAAKHLFEIEPHN-AGNHVLLS 459

Query: 461 NTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           N  AA  +W+ V   R  +K     K+ G SW+
Sbjct: 460 NIYAANNRWEEVARARNLLKESKAKKERGKSWI 492


>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 780

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 145/471 (30%), Positives = 261/471 (55%), Gaps = 16/471 (3%)

Query: 32  KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHL 91
           K+  ++ +   +T +SL  AL    + D    G ++H +  K  +  +  ++  L+ ++ 
Sbjct: 311 KMSEHNVMPGSITLSSLLPALVELGSFDL---GREVHGYSIKRAMDLDIFVANSLVDMYA 367

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           K G+L+ A  +F+++  R + ++N MIA  ++NG   E+  LV  +  SGE P+  T   
Sbjct: 368 KFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVN 427

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           +L A  C R        +G+ +HA  ++  +  D  +  AL+D Y K G+ S AR +F+ 
Sbjct: 428 VLPA--CARMA---SLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFER 482

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARK 267
             EK+ +   ++I G+    +  ++  +F++     ++ D V +   +   + ++   + 
Sbjct: 483 S-EKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACT-NLSVFKH 540

Query: 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
             E+HC L++ +      L ++L+D+Y K G +  A ++F+ + +K+V +W +MI GYG 
Sbjct: 541 GKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGM 600

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           +G  + A ELF +M+   +  ++V+++  L+AC H GLVDKG++ F  M    +++P+  
Sbjct: 601 HGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQ-NIEPQQM 659

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           HYACMVDLLGRAG L +  + + +MP   NSDVW ALL +CR+H ++E+A  AA  +F+L
Sbjct: 660 HYACMVDLLGRAGQLSKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFEL 719

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498
              +  G Y  + N  A  G+W+   ++R+ MK R V K+   SWV  + G
Sbjct: 720 KP-EHSGYYTLMINMYAETGRWNEANKIRKLMKSRKVQKNPAYSWVQDQDG 769



 Score =  138 bits (347), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 170/363 (46%), Gaps = 22/363 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           GL++HA   + G   +      L+  +  CG    A ++FDE+P+R + ++N +++ +L 
Sbjct: 138 GLELHASALRRGHLADVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLV 197

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG   ++    R+ + S  R  G+  ++    S             G  +HA  +K  + 
Sbjct: 198 NGMFHDA----RRALVSMMR-SGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLN 252

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               L  ALVD Y K G    +  VFD MLE+N +   S I  F++ GF  D   +FRK 
Sbjct: 253 TMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKM 312

Query: 244 VEKDIV--------VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
            E +++        +  A++E  S  +       EVH   IK     D+ + ++LVDMYA
Sbjct: 313 SEHNVMPGSITLSSLLPALVELGSFDL-----GREVHGYSIKRAMDLDIFVANSLVDMYA 367

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           K G ++ A  +F+ M+ +NV +W +MI    +NG   +A  L   MQ+    PN +T + 
Sbjct: 368 KFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVN 427

Query: 356 ALSACGHAGLVDKGREIFE-SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
            L AC     +  G++I   S+ R       + +   ++D+  + G L  A + + E  E
Sbjct: 428 VLPACARMASLKMGKQIHAWSIRRGLMFDLFISN--ALIDMYSKCGQLSLA-RNIFERSE 484

Query: 415 KPN 417
           K +
Sbjct: 485 KDD 487



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 108/416 (25%), Positives = 201/416 (48%), Gaps = 21/416 (5%)

Query: 42  PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQ 101
           PL   SL S +          +GL IHA   K G+    N++  L+ ++ K G ++ + Q
Sbjct: 217 PLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQ 276

Query: 102 MFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161
           +FD + ++   ++N  I  +L  G   + L + RK+      P   T S +L A     S
Sbjct: 277 VFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGS 336

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
                 +LGR VH   +K  +  D  +  +LVD Y K G    A  +F+ M ++NV+   
Sbjct: 337 -----FDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWN 391

Query: 222 SMISGFMSQGFVEDAEEI---FRKTVE--KDIVVYNAMIEGYSISIETARKALEVHCQLI 276
           +MI+  +  G   +A  +    +K+ E    I + N +       + + +   ++H   I
Sbjct: 392 AMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPA--CARMASLKMGKQIHAWSI 449

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           +     D+ + +AL+DMY+KCG++  AR +F+  ++ +V ++ ++I GY ++    ++L 
Sbjct: 450 RRGLMFDLFISNALIDMYSKCGQLSLARNIFERSEKDDV-SYNTLILGYSQSPWCFESLL 508

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVDL 395
           LF  M+   +  + V+F+GALSAC +  +   G+EI   +  R  S  P + +   ++DL
Sbjct: 509 LFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSN--SLLDL 566

Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451
             + G L  A K   ++ +K  +  W  ++    +H  +++    A E+F+L   D
Sbjct: 567 YTKGGMLVTASKIFNKITKKDVAS-WNTMILGYGMHGQIDI----AFELFELMKGD 617



 Score =  103 bits (257), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 144/326 (44%), Gaps = 23/326 (7%)

Query: 129 ESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVL 188
           E+L +   ++ S  RPD  TF   L A+    + V    + G  +HA  L+    AD   
Sbjct: 100 EALRVYNLMLRSAVRPDDRTFPFALHAAA---AAVASAEDKGLELHASALRRGHLADVFT 156

Query: 189 YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI 248
              LV  Y   GK   AR VFD M E++V+   S++S F+  G   DA       +    
Sbjct: 157 GNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGF 216

Query: 249 VVYNAMIEGYSISIETARK---ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARR 305
            +  A +     +  T ++    L +H   +K      V L +ALVDMY K G ++ + +
Sbjct: 217 PLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQ 276

Query: 306 VFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365
           VFD M ++N  +W S I  +   G     L +F  M E  V P  +T    L A    G 
Sbjct: 277 VFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGS 336

Query: 366 VDKGREIFESMERDYSMKPKMEH----YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
            D GRE+       YS+K  M+        +VD+  + GSLE+A     +M ++ N   W
Sbjct: 337 FDLGREV-----HGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDR-NVVSW 390

Query: 422 AALLSSCRLHDDVEMANIAANEIFKL 447
            A++++        + N A  E F+L
Sbjct: 391 NAMIANL-------VQNGAETEAFRL 409


>gi|356495778|ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 765

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 139/434 (32%), Positives = 241/434 (55%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH+ + + G   N +I   +  +++KCG L  A    +++ ++   A   ++ GY K
Sbjct: 211 GKQIHSQLIRIGFAANISIETLISNMYVKCGWLDGAEVATNKMTRKNAVACTGLMVGYTK 270

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
             +  ++L L  K++S G   DG+ FS+ILKA   C +   L    G+ +H+  +K  ++
Sbjct: 271 AARNRDALLLFGKMISEGVELDGFVFSIILKA---CAALGDLYT--GKQIHSYCIKLGLE 325

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           ++  + T LVD YVK  +   AR  F+ + E N    +++I+G+   G  + A E+F+  
Sbjct: 326 SEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGQFDRALEVFKAI 385

Query: 244 VEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
             K ++    +Y  + +  S ++       ++H   IK      +   SA++ MY+KCG+
Sbjct: 386 RSKGVLLNSFIYTNIFQACS-AVSDLICGAQIHADAIKKGLVAYLSGESAMISMYSKCGQ 444

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +D A + F  + + +   WT++I  +  +G   +AL LF  MQ   V+PN VTF+G L+A
Sbjct: 445 VDYAHQAFLTIDKPDTVAWTAIICAHAYHGKAFEALRLFKEMQGSGVRPNAVTFIGLLNA 504

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H+GLV +G++I +SM  +Y + P ++HY CM+D+  RAG L++AL+ +  +P +P+  
Sbjct: 505 CSHSGLVKEGKKILDSMSDEYGVNPTIDHYNCMIDVYSRAGLLQEALEVIRSLPFEPDVM 564

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
            W +LL  C  H ++E+  IAA+ IF+L+  D    YV + N  A AGKWD   + R+ M
Sbjct: 565 SWKSLLGGCWSHRNLEIGMIAADNIFRLDPLD-SATYVIMFNLYALAGKWDEAAQFRKMM 623

Query: 480 KLRGVLKDTGCSWV 493
             R + K+  CSW+
Sbjct: 624 AERNLRKEVSCSWI 637



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 192/401 (47%), Gaps = 42/401 (10%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           +L ++  C +   A + FD++  + LS+++ +I+ Y + G+++E++ L  +++  G  P+
Sbjct: 132 ILKMYCDCKSFTSAERFFDKIVDQDLSSWSTIISAYTEEGRIDEAVRLFLRMLDLGITPN 191

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
              FS ++ + T      P   +LG+ +H+Q+++    A+  + T + + YVK G    A
Sbjct: 192 SSIFSTLIMSFT-----DPSMLDLGKQIHSQLIRIGFAANISIETLISNMYVKCGWLDGA 246

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSIS 261
            +  + M  KN +  T ++ G+       DA  +F K     VE D  V++ +++  + +
Sbjct: 247 EVATNKMTRKNAVACTGLMVGYTKAARNRDALLLFGKMISEGVELDGFVFSIILKACA-A 305

Query: 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
           +       ++H   IK     +V +G+ LVD Y KC + + AR+ F+ + + N F+W+++
Sbjct: 306 LGDLYTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSAL 365

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG-----------HAGLVDKGR 370
           I GY ++G  ++ALE+F  ++   V  N   +     AC            HA  + KG 
Sbjct: 366 IAGYCQSGQFDRALEVFKAIRSKGVLLNSFIYTNIFQACSAVSDLICGAQIHADAIKKGL 425

Query: 371 EIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRL 430
             + S E            + M+ +  + G ++ A +  L + +KP++  W A++ +   
Sbjct: 426 VAYLSGE------------SAMISMYSKCGQVDYAHQAFLTI-DKPDTVAWTAIICAHAY 472

Query: 431 HDDVEMANIAANEIFK--LNANDRPGA--YVALSNTLAAAG 467
           H         A  +FK    +  RP A  ++ L N  + +G
Sbjct: 473 HGKA----FEALRLFKEMQGSGVRPNAVTFIGLLNACSHSG 509



 Score = 72.8 bits (177), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 74/359 (20%), Positives = 154/359 (42%), Gaps = 47/359 (13%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           + G +IH++  K G++   ++   L+  ++KC   + A Q F+ + +    +++ +IAGY
Sbjct: 310 YTGKQIHSYCIKLGLESEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGY 369

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            ++GQ + +L + + + S G   + + ++ I +A +     +      G  +HA  +K  
Sbjct: 370 CQSGQFDRALEVFKAIRSKGVLLNSFIYTNIFQACSAVSDLI-----CGAQIHADAIKKG 424

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           + A     +A++  Y K G+  YA   F  + + + +  T++I      G   +A  +F+
Sbjct: 425 LVAYLSGESAMISMYSKCGQVDYAHQAFLTIDKPDTVAWTAIICAHAYHGKAFEALRLFK 484

Query: 242 KT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           +     V  + V +  ++   S            H  L+K    E  K+  ++ D Y   
Sbjct: 485 EMQGSGVRPNAVTFIGLLNACS------------HSGLVK----EGKKILDSMSDEYGVN 528

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
             ID                +  MID Y + G   +ALE+   ++    +P+ +++   L
Sbjct: 529 PTIDH---------------YNCMIDVYSRAGLLQEALEV---IRSLPFEPDVMSWKSLL 570

Query: 358 SACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
             C     ++ G    +++ R   + P     Y  M +L   AG  ++A +F   M E+
Sbjct: 571 GGCWSHRNLEIGMIAADNIFR---LDPLDSATYVIMFNLYALAGKWDEAAQFRKMMAER 626



 Score = 49.7 bits (117), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 22/93 (23%), Positives = 47/93 (50%)

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           + + ++ MY  C     A R FD +  +++ +W+++I  Y + G  ++A+ LF  M +  
Sbjct: 128 IDNCILKMYCDCKSFTSAERFFDKIVDQDLSSWSTIISAYTEEGRIDEAVRLFLRMLDLG 187

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMER 378
           + PN   F   + +     ++D G++I   + R
Sbjct: 188 ITPNSSIFSTLIMSFTDPSMLDLGKQIHSQLIR 220


>gi|357118480|ref|XP_003560982.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Brachypodium distachyon]
          Length = 796

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 155/456 (33%), Positives = 239/456 (52%), Gaps = 16/456 (3%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           +T+L S L           G  +HA   K G+  + ++   L+ L+ KCG ++ A  +FD
Sbjct: 221 STTLASVLPAAAEVANTTMGRCVHAFGEKCGLAQHEHVVTGLISLYAKCGDMECARHLFD 280

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP 164
            +    L  YN +I+GY  NG V  S+ L ++LV  G RP   T   ++   +      P
Sbjct: 281 RMEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHS------P 334

Query: 165 LPRN-LGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
                L   +HA ++K  + A+  + TAL   Y +      AR  FD M EK +    +M
Sbjct: 335 FGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSARRAFDAMPEKTMESWNAM 394

Query: 224 ISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNV 279
           ISG+   G  E A  +F++ ++   V  N +    ++S      AL     VH ++I N 
Sbjct: 395 ISGYAQNGLTEMAVALFQQ-MQALNVRPNPLTISSALSACAQLGALSLGKWVH-KIIANE 452

Query: 280 FFE-DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
             E +V + +AL+DMY KCG I +AR +FD M  KNV +W  MI GYG +G   +AL+L+
Sbjct: 453 KLELNVYVMTALIDMYVKCGSIAEARCIFDSMDNKNVVSWNVMISGYGLHGQGAEALKLY 512

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398
             M +  + P   TFL  L AC H GLV +G  +F SM  DY + P +EH  CMVDLLGR
Sbjct: 513 KDMMDAHLHPTSSTFLSVLYACSHGGLVKEGTTVFRSMTSDYGITPGIEHCTCMVDLLGR 572

Query: 399 AGSLEQALKFVLEMPEKP-NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457
           AG L++A + + E P+      +W ALL +C +H D ++A +A+ ++F+L   +  G YV
Sbjct: 573 AGQLKEAFELISEFPKSAVGPGIWGALLGACMVHKDGDLAKLASQKLFELEPENT-GYYV 631

Query: 458 ALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            LSN   +  ++     +R++ K R ++K  GC+ +
Sbjct: 632 LLSNLYTSKKQYSEAAVVRQEAKSRKLVKTPGCTLI 667



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/370 (25%), Positives = 174/370 (47%), Gaps = 17/370 (4%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +HA    +G   +  ++  L  L+        A ++FD +P      +N ++AG   +  
Sbjct: 145 LHALAVASGFAADNFVASALAKLYFTLSRGNDARKVFDAVPSPDTVLWNTLLAGLSGSEA 204

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
           +E   + VR   +   RPD  T + +L A+    +       +GR VHA   KC +   +
Sbjct: 205 LE---AFVRMAGAGSVRPDSTTLASVLPAAAEVANT-----TMGRCVHAFGEKCGLAQHE 256

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
            + T L+  Y K G    AR +FD M   +++   ++ISG+   G V  + E+F++ V  
Sbjct: 257 HVVTGLISLYAKCGDMECARHLFDRMEGPDLVTYNALISGYSINGMVGSSVELFKELVGM 316

Query: 247 DIVVYNA-MIEGYSISIETARKALE--VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
            +   ++ ++    +      + L   +H  ++K     +  + +AL  +Y +   +D A
Sbjct: 317 GLRPSSSTLVALIPVHSPFGHEPLAGCLHAHVVKAGLDANAPVSTALTTLYCRFNDMDSA 376

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
           RR FD M +K + +W +MI GY +NG    A+ LF  MQ   V+PN +T   ALSAC   
Sbjct: 377 RRAFDAMPEKTMESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNPLTISSALSACAQL 436

Query: 364 GLVDKGREIFESMERDYSMKPKMEHY--ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
           G +  G+ + + +  +   K ++  Y    ++D+  + GS+ +A + + +  +  N   W
Sbjct: 437 GALSLGKWVHKIIANE---KLELNVYVMTALIDMYVKCGSIAEA-RCIFDSMDNKNVVSW 492

Query: 422 AALLSSCRLH 431
             ++S   LH
Sbjct: 493 NVMISGYGLH 502



 Score = 82.0 bits (201), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 89/371 (23%), Positives = 154/371 (41%), Gaps = 58/371 (15%)

Query: 144 PDGYTFSMILK--ASTCCRSNVPLPRNLG---RMVHAQILKCDVKADDVLYTALVDSYVK 198
           PD ++F+      AS+C R  +  P       R +HA  +     AD+ + +AL   Y  
Sbjct: 111 PDSFSFAFAATSLASSCSRGGISPPSAASAALRPLHALAVASGFAADNFVASALAKLYFT 170

Query: 199 GGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK-----TVEKDIV---- 249
             + + AR VFD +   + +   ++++G        +A E F +     +V  D      
Sbjct: 171 LSRGNDARKVFDAVPSPDTVLWNTLLAGLSGS----EALEAFVRMAGAGSVRPDSTTLAS 226

Query: 250 VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309
           V  A  E  + ++     A    C L ++   E V  G  L+ +YAKCG ++ AR +FD 
Sbjct: 227 VLPAAAEVANTTMGRCVHAFGEKCGLAQH---EHVVTG--LISLYAKCGDMECARHLFDR 281

Query: 310 MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG-----------ALS 358
           M+  ++ T+ ++I GY  NG    ++ELF  +    ++P+  T +             L+
Sbjct: 282 MEGPDLVTYNALISGYSINGMVGSSVELFKELVGMGLRPSSSTLVALIPVHSPFGHEPLA 341

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
            C HA +V  G +    +               +  L  R   ++ A +    MPEK   
Sbjct: 342 GCLHAHVVKAGLDANAPVS------------TALTTLYCRFNDMDSARRAFDAMPEK-TM 388

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA--------GKWD 470
           + W A++S    +   EMA     ++  LN    P   + +S+ L+A         GKW 
Sbjct: 389 ESWNAMISGYAQNGLTEMAVALFQQMQALNVRPNP---LTISSALSACAQLGALSLGKWV 445

Query: 471 SVTELREKMKL 481
                 EK++L
Sbjct: 446 HKIIANEKLEL 456


>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
          Length = 861

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 153/481 (31%), Positives = 257/481 (53%), Gaps = 42/481 (8%)

Query: 38  SLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALK 97
           SLS    A +L   L           GL+I+    K+ +  +  ++   + ++ KC AL 
Sbjct: 342 SLSGVFRACALVKGLSE---------GLQIYGLAIKSSLSLDVCVANAAIDMYGKCQALA 392

Query: 98  YAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
            A ++FDE+ +R   ++N +IA + +NG+  E+L L   ++ S   PD +TF  ILKA T
Sbjct: 393 EAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACT 452

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
                       G  +H+ I+K  + ++  +  +L+D Y K G    A  +     ++  
Sbjct: 453 ------GGSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRAN 506

Query: 218 ICST--------------------SMISGFMSQGFVEDAEEIFRKTVEKDIV----VYNA 253
           +  T                    S+ISG++ +   EDA+ +F + +E  I      Y  
Sbjct: 507 VSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYAT 566

Query: 254 MIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK 313
           +++  + ++ +A    ++H Q+IK     DV + S LVDMY+KCG + D+R +F+   ++
Sbjct: 567 VLDTCA-NLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRR 625

Query: 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF 373
           +  TW +MI GY  +G   +A++LF  M    ++PN+VTF+  L AC H GL+DKG E F
Sbjct: 626 DFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYF 685

Query: 374 ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH-D 432
             M+RDY + P++ HY+ MVD+LG++G +++AL+ + EMP + +  +W  LL  C +H +
Sbjct: 686 YMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRN 745

Query: 433 DVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSW 492
           +VE+A  A   + +L+  D   AY  LSN  A AG W+ V++LR  M+   + K+ GCSW
Sbjct: 746 NVEVAEEATAALLRLDPQD-SSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSW 804

Query: 493 V 493
           V
Sbjct: 805 V 805



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 92/403 (22%), Positives = 188/403 (46%), Gaps = 51/403 (12%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMI----- 118
           G + HAH+  +G +P T +   LL ++        A  +FD++P R + ++N MI     
Sbjct: 25  GKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSK 84

Query: 119 --------------------------AGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
                                     +GYL+NG+  +S+ +   +   G   DG TF++I
Sbjct: 85  SNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAII 144

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           LK  +          +LG  +H  +++     D V  +AL+D Y KG +   +  VF  +
Sbjct: 145 LKVCSFLEDT-----SLGMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGI 199

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKA 268
            EKN +  +++I+G +    +  A + F++  + +      +Y +++   + ++   R  
Sbjct: 200 PEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCA-ALSELRLG 258

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
            ++H   +K+ F  D  + +A +DMYAKC  + DA+ +FD+ +  N  ++ +MI GY + 
Sbjct: 259 GQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQE 318

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
            +  +AL LF  +    +  + ++  G   AC     + +G +I+       ++K  +  
Sbjct: 319 EHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIY-----GLAIKSSLSL 373

Query: 389 YACM----VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
             C+    +D+ G+  +L +A +   EM  + ++  W A++++
Sbjct: 374 DVCVANAAIDMYGKCQALAEAFRVFDEM-RRRDAVSWNAIIAA 415



 Score =  113 bits (283), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 169/360 (46%), Gaps = 16/360 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH  + + G   +   +  LL ++ K      + ++F  +P++   +++ +IAG ++
Sbjct: 157 GMQIHGIVVRVGCDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQ 216

Query: 124 NGQVEESLSLVRKL--VSSGERPDGYTFSMILKASTCCRSNVPLPR-NLGRMVHAQILKC 180
           N  +  +L   +++  V++G     Y        ++  RS   L    LG  +HA  LK 
Sbjct: 217 NNLLSLALKFFKEMQKVNAGVSQSIY--------ASVLRSCAALSELRLGGQLHAHALKS 268

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
           D  AD ++ TA +D Y K      A+I+FD     N     +MI+G+  +     A  +F
Sbjct: 269 DFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLF 328

Query: 241 RKTVEKDIVVYNAMIEGYSIS---IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
            + +   +      + G   +   ++   + L+++   IK+    DV + +A +DMY KC
Sbjct: 329 HRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLSLDVCVANAAIDMYGKC 388

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
             + +A RVFD M++++  +W ++I  + +NG   + L LF  M    ++P+  TF   L
Sbjct: 389 QALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSIL 448

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            AC   G +  G EI  S+ +   M         ++D+  + G +E+A K      ++ N
Sbjct: 449 KACT-GGSLGYGMEIHSSIVKS-GMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRAN 506



 Score = 74.3 bits (181), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/243 (25%), Positives = 114/243 (46%), Gaps = 14/243 (5%)

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           K G +E        ++ SG RP  +  + +L+  T  R  V        MV  ++   DV
Sbjct: 18  KQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVS-----ASMVFDKMPLRDV 72

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-- 240
               V +  +++ Y K      A   F+MM  ++V+   SM+SG++  G    + E+F  
Sbjct: 73  ----VSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVD 128

Query: 241 --RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
             R+ +E D   +  +++  S  +E     +++H  +++     DV   SAL+DMYAK  
Sbjct: 129 MGREGIEFDGRTFAIILKVCSF-LEDTSLGMQIHGIVVRVGCDTDVVAASALLDMYAKGK 187

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           +  ++ RVF  + +KN  +W+++I G  +N   + AL+ F  MQ+     +   +   L 
Sbjct: 188 RFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLR 247

Query: 359 ACG 361
           +C 
Sbjct: 248 SCA 250



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 46/196 (23%), Positives = 92/196 (46%), Gaps = 8/196 (4%)

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             DV   + +++ Y+K   +  A   F+ M  ++V +W SM+ GY +NG   +++E+F  
Sbjct: 69  LRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVD 128

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           M    ++ +  TF   L  C        G +I   + R       +   + ++D+  +  
Sbjct: 129 MGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVR-VGCDTDVVAASALLDMYAKGK 187

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
              ++L+    +PEK NS  W+A+++ C  ++ + +A     E+ K+NA      Y ++ 
Sbjct: 188 RFVESLRVFQGIPEK-NSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVL 246

Query: 461 NTLAAAGKWDSVTELR 476
            + AA      ++ELR
Sbjct: 247 RSCAA------LSELR 256


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 148/459 (32%), Positives = 252/459 (54%), Gaps = 17/459 (3%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           N +T T + S+    +N +    G ++H  + +  +  +  +   L+ ++ KCG L+ A 
Sbjct: 206 NSVTFTVVVSSCTRLLNLER---GKEVHRELIERRILLDAFVLSALVDMYGKCGCLEMAK 262

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           ++F+++P++    +N MI GY   G     + L+ ++   G +P   T + I+ AS+   
Sbjct: 263 EVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDEGTKPTLMTLTSIIYASS--- 319

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
            +V L    G+ +H  IL+  +  D  +  +L+D Y K G  S A  +F  + +  V+  
Sbjct: 320 RSVQLRH--GKFIHGYILRNRIDVDIFIDVSLIDFYFKCGYVSSAETIFRTISKNEVVSW 377

Query: 221 TSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLI 276
             MISG +  G    A  I+       V+ D + +++ +   S  +    K  E+H  +I
Sbjct: 378 NVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACS-QLAALDKGRELHYCII 436

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
            +    +  +  AL+DMYAKCG +D+AR++F  + ++++ +WTSMI  YG +G  ++AL 
Sbjct: 437 NHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWTSMIFAYGSHGQASEALR 496

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           LF  MQ+  V+ + VTFL  LSAC HAGLVD+G   F  M   Y +KP +EHY+C++DLL
Sbjct: 497 LFDEMQKLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQYDIKPGIEHYSCLIDLL 556

Query: 397 GRAGSLEQALKFVLEMPEKPNSDV--WAALLSSCRLHDDVEMANIAANEIFKLNANDRPG 454
           GRAG L +A + +L+  ++  SD+   + L S+C LH++  +       + +++ +D P 
Sbjct: 557 GRAGRLHEAYE-ILQRSKETRSDIGLLSTLFSACLLHNNFVLGIQIGKMLIEVDPDD-PS 614

Query: 455 AYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            Y+ LSN  A+  KWD V ++R KMK  G+ K  GCSW+
Sbjct: 615 TYILLSNMYASVNKWDEVRKVRRKMKELGLKKSPGCSWI 653



 Score =  171 bits (433), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 113/412 (27%), Positives = 210/412 (50%), Gaps = 12/412 (2%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           YG +IH H+ KTG+  +  +   L+ ++ KC     A ++FDE PQR +  +N +I+ Y 
Sbjct: 124 YGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYF 183

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           K+G+ E +L    K+   G  P+  TF++++  S+C R    L    G+ VH ++++  +
Sbjct: 184 KDGKAEMALKTFDKMKELGFEPNSVTFTVVV--SSCTR---LLNLERGKEVHRELIERRI 238

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             D  + +ALVD Y K G    A+ VF+ +  KN I   +MI+G+  +G      E+  +
Sbjct: 239 LLDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMR 298

Query: 243 TVEK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
             ++     ++   ++I   S S++  R    +H  +++N    D+ +  +L+D Y KCG
Sbjct: 299 MNDEGTKPTLMTLTSIIYASSRSVQL-RHGKFIHGYILRNRIDVDIFIDVSLIDFYFKCG 357

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            +  A  +F  + +  V +W  MI G+   GN  QAL ++  M+E  V+P+ +TF   LS
Sbjct: 358 YVSSAETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLS 417

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC     +DKGRE+   +  ++ ++        ++D+  + G +++A K   ++P K + 
Sbjct: 418 ACSQLAALDKGRELHYCI-INHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLP-KRDL 475

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
             W +++ +   H     A    +E+ KLN       ++A+ +  + AG  D
Sbjct: 476 VSWTSMIFAYGSHGQASEALRLFDEMQKLNVRADSVTFLAVLSACSHAGLVD 527



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 164/342 (47%), Gaps = 16/342 (4%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF-- 103
            +L SAL+   +S     G  IH  I   G + N  +S  L+  +  C     A  +F  
Sbjct: 4   VTLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVFQT 63

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL-VSSGERPDGYTFSMILKASTCCRSN 162
           ++ P   +S +N +++ Y  N +  E+L L  +L  +S  RPD YT+ ++LKA       
Sbjct: 64  NDCPL-DVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACG----- 117

Query: 163 VPLPRNL-GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
             L R + GR +H  +LK  +  D  + ++L++ Y K  +   A  +FD   +++V C  
Sbjct: 118 -GLGRVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWN 176

Query: 222 SMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIK 277
           ++IS +   G  E A + F K      E + V +  ++   +  +   R   EVH +LI+
Sbjct: 177 AVISCYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGK-EVHRELIE 235

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
                D  + SALVDMY KCG ++ A+ VF+ + +KN  TW +MI GY   G+    +EL
Sbjct: 236 RRILLDAFVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIEL 295

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD 379
              M +   +P  +T    + A   +  +  G+ I   + R+
Sbjct: 296 LMRMNDEGTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRN 337



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 147/294 (50%), Gaps = 17/294 (5%)

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIV 208
           +  +L A   C S+  L +  G+++H +I  C  +++ VL  +L+  Y      + A +V
Sbjct: 3   YVTLLSALRTCTSSKLLKQ--GKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELV 60

Query: 209 F---DMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT-----VEKDIVVYNAMIEGYSI 260
           F   D  L+  V    +++S + +     +A ++F +      V  D   Y  +++    
Sbjct: 61  FQTNDCPLD--VSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACG- 117

Query: 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
            +        +H  L+K     DV +GS+L++MYAKC +  DA ++FD   Q++V  W +
Sbjct: 118 GLGRVIYGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNA 177

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF-ESMERD 379
           +I  Y K+G    AL+ F  M+E   +PN VTF   +S+C     +++G+E+  E +ER 
Sbjct: 178 VISCYFKDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERR 237

Query: 380 YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDD 433
             +   +   + +VD+ G+ G LE A +   ++P K N+  W A+++   L  D
Sbjct: 238 ILLDAFV--LSALVDMYGKCGCLEMAKEVFEKIPRK-NAITWNAMITGYSLKGD 288


>gi|356511263|ref|XP_003524346.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 763

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 142/414 (34%), Positives = 234/414 (56%), Gaps = 19/414 (4%)

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149
           + + G L  A ++F+E P R +  +  M++GY++NG V+E+    RK        +  ++
Sbjct: 242 YAQVGDLSQAKRLFNESPIRDVFTWTAMVSGYVQNGMVDEA----RKYFDEMPVKNEISY 297

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVF 209
           + +L      +  V         +  ++ +     +   +  ++  Y + G  + AR +F
Sbjct: 298 NAMLAGYVQYKKMV---------IAGELFEAMPCRNISSWNTMITGYGQNGGIAQARKLF 348

Query: 210 DMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL 269
           DMM +++ +   ++ISG+   G  E+A  +F + +++D    N      ++S      AL
Sbjct: 349 DMMPQRDCVSWAAIISGYAQNGHYEEALNMFVE-MKRDGESSNRSTFSCALSTCADIAAL 407

Query: 270 E----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
           E    VH Q++K  F     +G+AL+ MY KCG  D+A  VF+ +++K+V +W +MI GY
Sbjct: 408 ELGKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGY 467

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
            ++G   QAL LF  M++  V+P+ +T +G LSAC H+GL+D+G E F SM+RDY++KP 
Sbjct: 468 ARHGFGRQALVLFESMKKAGVKPDEITMVGVLSACSHSGLIDRGTEYFYSMDRDYNVKPT 527

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIF 445
            +HY CM+DLLGRAG LE+A   +  MP  P +  W ALL + R+H + E+   AA  +F
Sbjct: 528 SKHYTCMIDLLGRAGRLEEAENLMRNMPFDPGAASWGALLGASRIHGNTELGEKAAEMVF 587

Query: 446 KLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           K+   +  G YV LSN  AA+G+W  V ++R KM+  GV K TG SWV  ++ +
Sbjct: 588 KMEPQN-SGMYVLLSNLYAASGRWVDVGKMRSKMREAGVQKVTGYSWVEVQNKI 640



 Score =  116 bits (291), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 168/344 (48%), Gaps = 32/344 (9%)

Query: 85  KLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERP 144
           K +  H++ G    A ++F+ +P+R+  +YN MI+GYL+N +     SL R L       
Sbjct: 51  KAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAK----FSLARDLFDKMPER 106

Query: 145 DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSY 204
           D ++++++L       +     R LG     ++     K D V + A++  Y + G    
Sbjct: 107 DLFSWNVML-------TGYVRNRRLGEA--HKLFDLMPKKDVVSWNAMLSGYAQNGFVDE 157

Query: 205 ARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIET 264
           AR VF+ M  +N I    +++ ++  G +++A  +F      +++ +N ++ GY      
Sbjct: 158 AREVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGY-----V 212

Query: 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
            R  L    QL   +   DV   + ++  YA+ G +  A+R+F+    ++VFTWT+M+ G
Sbjct: 213 KRNMLGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNESPIRDVFTWTAMVSG 272

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA-CGHAGLVDKGREIFESME-RDYSM 382
           Y +NG  ++A + F  M       N +++   L+    +  +V  G E+FE+M  R+ S 
Sbjct: 273 YVQNGMVDEARKYFDEMP----VKNEISYNAMLAGYVQYKKMVIAG-ELFEAMPCRNIS- 326

Query: 383 KPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
                 +  M+   G+ G + QA K    MP++ +   WAA++S
Sbjct: 327 -----SWNTMITGYGQNGGIAQARKLFDMMPQR-DCVSWAAIIS 364



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 73/280 (26%), Positives = 145/280 (51%), Gaps = 20/280 (7%)

Query: 94  GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
           G +  A ++F+++P R   ++N ++A Y+ NG+++E+    R+L  S        + +I 
Sbjct: 153 GFVDEAREVFNKMPHRNSISWNGLLAAYVHNGRLKEA----RRLFESQS-----NWELI- 202

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVL-YTALVDSYVKGGKTSYARIVFDMM 212
             S  C     + RN+  +  A+ L   +   DV+ +  ++  Y + G  S A+ +F+  
Sbjct: 203 --SWNCLMGGYVKRNM--LGDARQLFDRMPVRDVISWNTMISGYAQVGDLSQAKRLFNES 258

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVH 272
             ++V   T+M+SG++  G V++A + F +   K+ + YNAM+ GY        K + + 
Sbjct: 259 PIRDVFTWTAMVSGYVQNGMVDEARKYFDEMPVKNEISYNAMLAGY-----VQYKKMVIA 313

Query: 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPN 332
            +L + +   ++   + ++  Y + G I  AR++FD M Q++  +W ++I GY +NG+  
Sbjct: 314 GELFEAMPCRNISSWNTMITGYGQNGGIAQARKLFDMMPQRDCVSWAAIISGYAQNGHYE 373

Query: 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           +AL +F  M+      N  TF  ALS C     ++ G+++
Sbjct: 374 EALNMFVEMKRDGESSNRSTFSCALSTCADIAALELGKQV 413



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/251 (25%), Positives = 115/251 (45%), Gaps = 33/251 (13%)

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
           D V +   + S+++ G    A  VF+ M  ++ +   +MISG++       A ++F K  
Sbjct: 45  DIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGYLRNAKFSLARDLFDKMP 104

Query: 245 EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDAR 304
           E+D+  +N M+ GY  +    R+  E H +L   +  +DV   +A++  YA+ G +D+AR
Sbjct: 105 ERDLFSWNVMLTGYVRN----RRLGEAH-KLFDLMPKKDVVSWNAMLSGYAQNGFVDEAR 159

Query: 305 RVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF------CMMQECCVQPNYVTFLGALS 358
            VF+ M  +N  +W  ++  Y  NG   +A  LF       ++   C+   YV       
Sbjct: 160 EVFNKMPHRNSISWNGLLAAYVHNGRLKEARRLFESQSNWELISWNCLMGGYVK------ 213

Query: 359 ACGHAGLVDKGREIFESME-RDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
                 ++   R++F+ M  RD      +  +  M+    + G L QA +      E P 
Sbjct: 214 ----RNMLGDARQLFDRMPVRD------VISWNTMISGYAQVGDLSQAKRL---FNESPI 260

Query: 418 SDV--WAALLS 426
            DV  W A++S
Sbjct: 261 RDVFTWTAMVS 271



 Score = 71.6 bits (174), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/162 (27%), Positives = 82/162 (50%), Gaps = 9/162 (5%)

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHC 273
           + +++     IS  M  G  + A  +F     +  V YNAMI GY   +  A+ +L    
Sbjct: 43  DPDIVTWNKAISSHMRNGHCDSALRVFNSMPRRSSVSYNAMISGY---LRNAKFSLAR-- 97

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
            L   +   D+   + ++  Y +  ++ +A ++FD M +K+V +W +M+ GY +NG  ++
Sbjct: 98  DLFDKMPERDLFSWNVMLTGYVRNRRLGEAHKLFDLMPKKDVVSWNAMLSGYAQNGFVDE 157

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES 375
           A E+F  M       N +++ G L+A  H G + + R +FES
Sbjct: 158 AREVFNKMP----HRNSISWNGLLAAYVHNGRLKEARRLFES 195



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 4/142 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H  + K G +    +   LL ++ KCG+   A  +F+ + ++ + ++N MIAGY +
Sbjct: 410 GKQVHGQVVKAGFETGCFVGNALLGMYFKCGSTDEANDVFEGIEEKDVVSWNTMIAGYAR 469

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G   ++L L   +  +G +PD  T   +L A   C  +  + R      ++     +VK
Sbjct: 470 HGFGRQALVLFESMKKAGVKPDEITMVGVLSA---CSHSGLIDRGT-EYFYSMDRDYNVK 525

Query: 184 ADDVLYTALVDSYVKGGKTSYA 205
                YT ++D   + G+   A
Sbjct: 526 PTSKHYTCMIDLLGRAGRLEEA 547


>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Glycine max]
          Length = 916

 Score =  253 bits (645), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 156/464 (33%), Positives = 257/464 (55%), Gaps = 19/464 (4%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
            SL S L    N      G + H    K G++ N      L+ ++ KCG +K A + +  
Sbjct: 420 VSLASILSACGNIKVLEAGQQFHCLSVKLGLETNLFAGSSLIDMYSKCGDIKDAHKTYSS 479

Query: 106 LPQRTLSAYNYMIAGY-LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP 164
           +P+R++ + N +IAGY LKN   +ES++L+ ++   G +P   TF+ ++     C+ +  
Sbjct: 480 MPERSVVSVNALIAGYALKN--TKESINLLHEMQILGLKPSEITFASLIDV---CKGSAK 534

Query: 165 LPRNLGRMVHAQILKCDVK-ADDVLYTALVDSYVKGGKTSYARIVFDMMLE-KNVICSTS 222
           +   LG  +H  I+K  +    + L T+L+  Y+   + + A I+F      K+++  T+
Sbjct: 535 VI--LGLQIHCAIVKRGLLCGSEFLGTSLLGMYMDSQRLADANILFSEFSSLKSIVMWTA 592

Query: 223 MISGFMSQGFVEDAEEIFRK----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKN 278
           +ISG +     + A  ++R+     +  D   +  +++  ++ + +     E+H  +   
Sbjct: 593 LISGHIQNECSDVALNLYREMRDNNISPDQATFVTVLQACAL-LSSLHDGREIHSLIFHT 651

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHM-QQKNVFTWTSMIDGYGKNGNPNQALEL 337
            F  D    SALVDMYAKCG +  + +VF+ +  +K+V +W SMI G+ KNG    AL++
Sbjct: 652 GFDLDELTSSALVDMYAKCGDVKSSVQVFEELATKKDVISWNSMIVGFAKNGYAKCALKV 711

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
           F  M + C+ P+ VTFLG L+AC HAG V +GR+IF+ M   Y ++P+++HYACMVDLLG
Sbjct: 712 FDEMTQSCITPDDVTFLGVLTACSHAGWVYEGRQIFDVMVNYYGIEPRVDHYACMVDLLG 771

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457
           R G L++A +F+ ++  +PN+ +WA LL +CR+H D +    AA ++ +L        YV
Sbjct: 772 RWGFLKEAEEFIDKLEVEPNAMIWANLLGACRIHGDEKRGQRAAKKLIELEPQS-SSPYV 830

Query: 458 ALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSW--VGTESGL 499
            LSN  AA+G WD    LR  M  + + K  GCSW  VG E+ L
Sbjct: 831 LLSNMYAASGNWDEARSLRRTMIKKDIQKIPGCSWIVVGQETNL 874



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 192/403 (47%), Gaps = 15/403 (3%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L   S  + +  Y+ +  P   L I   +  + V P+    + +L  ++  G L  A Q+
Sbjct: 113 LHTVSWTALISGYVQAGLPHEALHIFDKMRNSAV-PDQVALVTVLNAYISLGKLDDACQL 171

Query: 103 FDELPQ--RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           F ++P   R + A+N MI+G+ K    EE+L+   ++   G +    T + +L A     
Sbjct: 172 FQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLA 231

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           +      N G +VHA  +K   ++   + ++L++ Y K      AR VFD + +KN+I  
Sbjct: 232 A-----LNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVW 286

Query: 221 TSMISGFMSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSISIETARKALEVHCQLI 276
            +M+  +   GF+ +  E+F   +      D   Y +++   +   E      ++H  +I
Sbjct: 287 NAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCA-CFEYLEVGRQLHSAII 345

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           K  F  ++ + +AL+DMYAK G + +A + F+HM  ++  +W ++I GY +      A  
Sbjct: 346 KKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEVEAGAFS 405

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           LF  M    + P+ V+    LSACG+  +++ G++ F  +     ++  +   + ++D+ 
Sbjct: 406 LFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQ-FHCLSVKLGLETNLFAGSSLIDMY 464

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANI 439
            + G ++ A K    MPE+    V  AL++   L +  E  N+
Sbjct: 465 SKCGDIKDAHKTYSSMPERSVVSV-NALIAGYALKNTKESINL 506



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 168/384 (43%), Gaps = 80/384 (20%)

Query: 114 YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMV 173
           +N+ + G  K+   E  L      ++SG  PD +TF++ L A  C +       +LGR V
Sbjct: 16  WNWRVQG-TKHYSSERVLQFYASFMNSGHSPDQFTFAVTLSA--CAKLQ---NLHLGRAV 69

Query: 174 HAQILKCDVKADD---------------------------------VLYTALVDSYVKGG 200
           H+ ++K  +++                                   V +TAL+  YV+ G
Sbjct: 70  HSCVIKSGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAG 129

Query: 201 KTSYARIVFDMMLEKNV---ICSTSMISGFMSQGFVEDAEEIFRK--TVEKDIVVYNAMI 255
               A  +FD M    V   +   ++++ ++S G ++DA ++F++     +++V +N MI
Sbjct: 130 LPHEALHIFDKMRNSAVPDQVALVTVLNAYISLGKLDDACQLFQQMPIPIRNVVAWNVMI 189

Query: 256 EGYS----------------------------------ISIETARKALEVHCQLIKNVFF 281
            G++                                   S+      L VH   IK  F 
Sbjct: 190 SGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHGLLVHAHAIKQGFE 249

Query: 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM 341
             + + S+L++MY KC   DDAR+VFD + QKN+  W +M+  Y +NG  +  +ELF  M
Sbjct: 250 SSIYVASSLINMYGKCQMPDDARQVFDAISQKNMIVWNAMLGVYSQNGFLSNVMELFLDM 309

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGS 401
             C + P+  T+   LS C     ++ GR++  ++ +         + A ++D+  +AG+
Sbjct: 310 ISCGIHPDEFTYTSILSTCACFEYLEVGRQLHSAIIKKRFTSNLFVNNA-LIDMYAKAGA 368

Query: 402 LEQALKFVLEMPEKPNSDVWAALL 425
           L++A K    M  + +   W A++
Sbjct: 369 LKEAGKHFEHMTYRDHIS-WNAII 391


>gi|359495515|ref|XP_002265720.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial-like [Vitis vinifera]
          Length = 678

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 144/421 (34%), Positives = 232/421 (55%), Gaps = 12/421 (2%)

Query: 75  GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV 134
           G   +  +   +L L+ KCG +  A ++FD++ +R L  +  MI G  +NGQ  E++ + 
Sbjct: 135 GYGDDVFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIY 194

Query: 135 RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVD 194
           R++       DG     +++A T    +      +G  +H  +++ D+  D ++ T+LVD
Sbjct: 195 RQMHKKRVEGDGVVMLGLIQACTTLGHS-----KMGLSIHGYMIRKDIIMDVIVQTSLVD 249

Query: 195 SYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVV 250
            Y K G    A  VF  ML KNVI  +++ISGF   GF  +A ++         + D V 
Sbjct: 250 MYAKNGHLELASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVS 309

Query: 251 YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM 310
             +++   S  +   +    VH  +++ + F+ V   +A++DMY+KCG +  AR VFD +
Sbjct: 310 LVSVLLACS-QVGFLKLGKSVHGYIVRRLHFDCVS-STAVIDMYSKCGSLSFARTVFDQI 367

Query: 311 QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR 370
             ++  +W ++I  YG +G+  +AL LF  M+E  V+P++ TF   LSA  H+GLV+KGR
Sbjct: 368 SFRDSISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGR 427

Query: 371 EIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRL 430
             F  M  +Y ++P  +HYACMVDLL RAG +E+A + +  M  +P   +W ALLS C  
Sbjct: 428 YWFSIMVNEYKIQPSEKHYACMVDLLSRAGRVEEAQELIESMITEPGIAIWVALLSGCLN 487

Query: 431 HDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGC 490
           H    +  +AA ++ +LN +D PG Y  +SN  A A +WD V E+R+ MK  G+ K  G 
Sbjct: 488 HGKFLIGEMAAKKVLELNPDD-PGIYSLVSNFFATARRWDEVAEVRKIMKKTGMKKVPGY 546

Query: 491 S 491
           S
Sbjct: 547 S 547



 Score =  182 bits (463), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 143/481 (29%), Positives = 234/481 (48%), Gaps = 69/481 (14%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           KIHA +  TG+  + N + KL+  + + G ++ A Q+FD+ PQ  + A+N MI  Y + G
Sbjct: 25  KIHALMILTGIFGHGNSNAKLIQSYARLGHIESARQVFDKSPQCGVDAWNAMIIAYSRRG 84

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
            + E+LSL  ++ S G RPD  T++++LKA  C RS   L    G     Q +      D
Sbjct: 85  AMFEALSLYHRMASEGVRPDSSTYTVVLKA--CTRS---LDLRSGEETWRQAVDQGYGDD 139

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR---- 241
             +  A+++ Y K GK   A  VFD M  ++++C T+MI+G    G   +A +I+R    
Sbjct: 140 VFVGAAVLNLYAKCGKMDEAMRVFDKMGRRDLVCWTTMITGLAQNGQAREAVDIYRQMHK 199

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
           K VE D VV   +I+  + ++  ++  L +H  +I+     DV + ++LVDMYAK G ++
Sbjct: 200 KRVEGDGVVMLGLIQACT-TLGHSKMGLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLE 258

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
            A  VF  M  KNV +W+++I G+ +NG    AL+L   MQ    +P+ V+ +  L AC 
Sbjct: 259 LASCVFRRMLYKNVISWSALISGFAQNGFAGNALQLVVDMQSFGYKPDSVSLVSVLLACS 318

Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYAC-----MVDLLGRAGSL-------------- 402
             G +  G+ +   + R         H+ C     ++D+  + GSL              
Sbjct: 319 QVGFLKLGKSVHGYIVRRL-------HFDCVSSTAVIDMYSKCGSLSFARTVFDQISFRD 371

Query: 403 -----------------EQALKFVLEMPE---KPNSDVWAALLSSCRLHDDVEMA----N 438
                            E+AL   L+M E   KP+   +A+LLS+      VE      +
Sbjct: 372 SISWNAIIASYGIHGSGEEALSLFLQMRETNVKPDHATFASLLSAFSHSGLVEKGRYWFS 431

Query: 439 IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS-WVGTES 497
           I  NE +K+  +++   Y  + + L+ AG+ +   EL E M     + + G + WV   S
Sbjct: 432 IMVNE-YKIQPSEKH--YACMVDLLSRAGRVEEAQELIESM-----ITEPGIAIWVALLS 483

Query: 498 G 498
           G
Sbjct: 484 G 484



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 68/268 (25%), Positives = 137/268 (51%), Gaps = 15/268 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           GL IH ++ +  +  +  +   L+ ++ K G L+ A  +F  +  + + +++ +I+G+ +
Sbjct: 225 GLSIHGYMIRKDIIMDVIVQTSLVDMYAKNGHLELASCVFRRMLYKNVISWSALISGFAQ 284

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG    +L LV  + S G +PD  +   +L A     S V   + LG+ VH  I++  + 
Sbjct: 285 NGFAGNALQLVVDMQSFGYKPDSVSLVSVLLAC----SQVGFLK-LGKSVHGYIVR-RLH 338

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
            D V  TA++D Y K G  S+AR VFD +  ++ I   ++I+ +   G  E+A  +F   
Sbjct: 339 FDCVSSTAVIDMYSKCGSLSFARTVFDQISFRDSISWNAIIASYGIHGSGEEALSLFLQM 398

Query: 241 RKT-VEKDIVVYNAMIEGYSIS--IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           R+T V+ D   + +++  +S S  +E  R    +     K    E  K  + +VD+ ++ 
Sbjct: 399 RETNVKPDHATFASLLSAFSHSGLVEKGRYWFSIMVNEYKIQPSE--KHYACMVDLLSRA 456

Query: 298 GKIDDARRVFDHM-QQKNVFTWTSMIDG 324
           G++++A+ + + M  +  +  W +++ G
Sbjct: 457 GRVEEAQELIESMITEPGIAIWVALLSG 484


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  252 bits (644), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 142/451 (31%), Positives = 254/451 (56%), Gaps = 11/451 (2%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +L SAL+          G ++H+ + K  +  ++ + + L+ ++ KC ++  A  +F  +
Sbjct: 214 TLSSALKACAGMALRELGRQLHSSLIKMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLM 273

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P+R + A+N +I+G+ +N + EE+ SL   + + G   +  T S +LK+    ++N    
Sbjct: 274 PERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANY--- 330

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
             + R +HA  LK   + D+ +  +L+D+Y K G    A  VF+     +++  TS+++ 
Sbjct: 331 --MCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTA 388

Query: 227 FMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
           +   G  E+A  ++     + ++ D  V ++++   + S+    +  +VH  ++K  F  
Sbjct: 389 YAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNACA-SLSAYEQGKQVHVHILKFGFMS 447

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           D+  G++LV+MYAKCG I+DA   F  +  + + +W++MI G  ++G   +AL+LF  M 
Sbjct: 448 DIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQML 507

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
           +  V PN++T +  L AC HAGLV + +  F SM+  + ++P  EHYACM+DLLGRAG L
Sbjct: 508 KVGVPPNHITLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKL 567

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
           E A++ V +MP + N+ VW ALL + R+H ++++   AA  +  L   ++ G +V L+N 
Sbjct: 568 EAAMELVNKMPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEP-EKSGTHVLLANI 626

Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            A+ G WD V  +R  MK   V K+ G SW+
Sbjct: 627 YASVGMWDKVARVRRLMKDGKVKKEPGMSWL 657



 Score =  145 bits (365), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 121/499 (24%), Positives = 215/499 (43%), Gaps = 66/499 (13%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           + PS L+    +     G ++H  +  TG   +  ++  L+IL+ KCG    A  +FD +
Sbjct: 12  AFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDARSLFDAI 71

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P R++ ++N + + Y+ +    E++SL   +V SG RP+ ++ S ++   T    +V   
Sbjct: 72  PDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGLEDSVQ-- 129

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
              GR +H  ++K    +D     ALVD Y K G    A  VFD + + +++   ++I+G
Sbjct: 130 ---GRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAG 186

Query: 227 FMSQGFVEDAEEIFRKTVEKDI-----VVYNAMIEGYSISIETARKALEVHCQLIKNVFF 281
            +   +   A E+ R+  +  +      + +A+     +++    + L  H  LIK    
Sbjct: 187 CVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQL--HSSLIKMDMG 244

Query: 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMM 341
            D  LG  L+DMY+KC  +DDAR VF  M ++++  W ++I G+ +N    +A  LF +M
Sbjct: 245 SDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLM 304

Query: 342 QE-----------------CCVQPNYV---------------------TFLGALSACGHA 363
                                +Q NY+                     + +     CGH 
Sbjct: 305 HTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGH- 363

Query: 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDV 420
             V+    +FE      S    +  +  +V    + G  E+AL+  LEM +   KP+S V
Sbjct: 364 --VEDATRVFEE-----SPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFV 416

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
            ++LL++C      E        I K        A  +L N  A  G  +  +    ++ 
Sbjct: 417 CSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIP 476

Query: 481 LRGVLKDTGCSWVGTESGL 499
           +RG++     SW     GL
Sbjct: 477 VRGIV-----SWSAMIGGL 490



 Score = 99.8 bits (247), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/290 (26%), Positives = 140/290 (48%), Gaps = 12/290 (4%)

Query: 141 GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGG 200
           G + + + F  +LKA T  +  V     LG+ VH  ++     +D+ +  +LV  Y K G
Sbjct: 5   GIKCNEFAFPSVLKACTVTKDLV-----LGKQVHGIVVVTGFDSDEFVANSLVILYAKCG 59

Query: 201 KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIE 256
               AR +FD + +++V+   ++ S ++      +A  +F   V   I       ++MI 
Sbjct: 60  GFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMIN 119

Query: 257 GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF 316
                +E + +  ++H  LIK  +  D    +ALVDMYAK G ++DA  VFD + + ++ 
Sbjct: 120 -VCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIV 178

Query: 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM 376
           +W ++I G   +   ++ALEL   M +  + PN  T   AL AC    L + GR++  S+
Sbjct: 179 SWNAIIAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSL 238

Query: 377 ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
            +   M         ++D+  +  S++ A      MPE+ +   W A++S
Sbjct: 239 IK-MDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPER-DMIAWNAVIS 286



 Score = 81.6 bits (200), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 74/335 (22%), Positives = 149/335 (44%), Gaps = 30/335 (8%)

Query: 1   MPNLSRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDT 60
           MP    I  +   S H+++         FP  L + + +      T+L + L+       
Sbjct: 273 MPERDMIAWNAVISGHSQNEEDEEAASLFP--LMHTEGIG--FNQTTLSTVLKSIAALQA 328

Query: 61  PFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120
            +   +IHA   K+G + +  +   L+  + KCG ++ A ++F+E P   L  +  ++  
Sbjct: 329 NYMCRQIHALSLKSGFEFDNYVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTA 388

Query: 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
           Y ++GQ EE+L L  ++   G +PD +  S +L A   C S     +  G+ VH  ILK 
Sbjct: 389 YAQDGQGEEALRLYLEMQDRGIKPDSFVCSSLLNA---CASLSAYEQ--GKQVHVHILKF 443

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
              +D     +LV+ Y K G    A   F  +  + ++  ++MI G    G+ ++A ++F
Sbjct: 444 GFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLF 503

Query: 241 RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV--FFEDVKL----------GS 288
           ++ ++  +   +  +    +S+  A      H  L+     +F  +K+           +
Sbjct: 504 KQMLKVGVPPNHITL----VSVLCACN----HAGLVAEAKHYFNSMKILFGIEPMQEHYA 555

Query: 289 ALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMI 322
            ++D+  + GK++ A  + + M  Q N   W +++
Sbjct: 556 CMIDLLGRAGKLEAAMELVNKMPFQANALVWGALL 590


>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 787

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 130/414 (31%), Positives = 227/414 (54%), Gaps = 17/414 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+K+H  + K  ++    +   L+ ++ +CG +  A  +F E  ++ +  +  MI GY+ 
Sbjct: 304 GIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGMDEASLVFAETKEKDVITWTSMINGYIM 363

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKA--STCCRSNVPLPRNLGRMVHAQILKCD 181
           NG  + +L+L   +   G  P+  T + +L A  S CC          G+ +HA +++  
Sbjct: 364 NGNAKSALALCPAMQLDGVVPNAVTLASLLSACASLCCLKQ-------GKSLHAWVMRKK 416

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           + +D ++ TAL+D Y K    SY+  VF     K  +   +++SG +      +A  +F+
Sbjct: 417 LDSDVLVVTALIDMYAKCNAVSYSFQVFAKTSMKRTVPWNALLSGLIHNELAREAVGLFK 476

Query: 242 ----KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
               + VE +   +N++I  Y+I +   ++ + +H  L+++ F   + + + L+DMY+KC
Sbjct: 477 SMLIEEVEANHATFNSVIPAYAI-LADLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKC 535

Query: 298 GKIDDARRVFDHM--QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           G +D A ++FD +  ++K++  W+ +I GYG +G+   A+ LF  M    +QPN +TF  
Sbjct: 536 GSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTS 595

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            L AC H GLVD G  +F+ M  +Y   P   HY C+VDLLGRAG L++A   +  MP +
Sbjct: 596 VLHACSHRGLVDDGLTLFKYMIENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQ 655

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKW 469
            N  +W ALL +C +H +VE+  +AA  +F+L   +  G Y+ L+N  AA G+W
Sbjct: 656 QNHSIWGALLGACLIHQNVELGEVAAERLFELEP-ESTGNYILLANIYAAVGRW 708



 Score =  158 bits (400), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 131/506 (25%), Positives = 246/506 (48%), Gaps = 41/506 (8%)

Query: 8   RSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLP-------------SALQH 54
           ++ + + +  RH++++  ++ +       ++LSN  T  +L              S L H
Sbjct: 29  KTEMANGSEQRHHSVLLLDKIYGDCGDFRNNLSNSNTTKALSKSKSLIANVHRCDSLLCH 88

Query: 55  YINSDTPFYGLKIHAHITKTGV--KPN-TNISIKLLILHLKCGALKYAGQMFDELPQRTL 111
           Y  + +      +H H   +G+   PN  ++   L + +  CG +  A ++FD+L   +L
Sbjct: 89  YAATRSLNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCVPLARKLFDDLSDPSL 148

Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLG 170
             +N +I  Y+  G   ++L +   ++ SG+  PD YTF +++KA +     V    N+G
Sbjct: 149 FLWNAIIKMYVDKGFHFDALRVFDSMICSGKCWPDKYTFPLVIKACS-----VMSMLNVG 203

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
            ++H + L     ++  +  +L+  Y+  GK   AR VF++ML+++V+   +MISG+   
Sbjct: 204 VLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQN 263

Query: 231 GFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS---IETARKALEVHCQLIKNVFFEDVKLG 287
           G  E+A  +F   ++  +   +A I     S   ++     ++VH  + KN   E +++ 
Sbjct: 264 GRPEEALAVFNSMMDARVEPDSATIVSALPSCGHLKELELGIKVHKLVQKNHLQEKIEVR 323

Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347
           +ALVDMY++CG +D+A  VF   ++K+V TWTSMI+GY  NGN   AL L   MQ   V 
Sbjct: 324 NALVDMYSRCGGMDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVV 383

Query: 348 PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH----YACMVDLLGRAGSLE 403
           PN VT    LSAC     + +G+ +       + M+ K++        ++D+  +  ++ 
Sbjct: 384 PNAVTLASLLSACASLCCLKQGKSL-----HAWVMRKKLDSDVLVVTALIDMYAKCNAVS 438

Query: 404 QALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL 463
            + + V        +  W ALLS   +H+++    +    +FK    +   A  A  N++
Sbjct: 439 YSFQ-VFAKTSMKRTVPWNALLSGL-IHNELAREAVG---LFKSMLIEEVEANHATFNSV 493

Query: 464 AAAGKWDSVTELREKMKLRGVLKDTG 489
             A  +  + +L++ M L   L  +G
Sbjct: 494 IPA--YAILADLKQVMNLHSYLVRSG 517



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 187/387 (48%), Gaps = 14/387 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+ IH     +G   N  +   LL +++ CG +  A Q+F+ + +R++ ++N MI+G+ +
Sbjct: 203 GVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQ 262

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG+ EE+L++   ++ +   PD  T   I+ A   C     L   LG  VH  + K  ++
Sbjct: 263 NGRPEEALAVFNSMMDARVEPDSAT---IVSALPSCGHLKEL--ELGIKVHKLVQKNHLQ 317

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
               +  ALVD Y + G    A +VF    EK+VI  TSMI+G++  G  + A  +    
Sbjct: 318 EKIEVRNALVDMYSRCGGMDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALC-PA 376

Query: 244 VEKDIVVYNAM----IEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           ++ D VV NA+    +     S+   ++   +H  +++     DV + +AL+DMYAKC  
Sbjct: 377 MQLDGVVPNAVTLASLLSACASLCCLKQGKSLHAWVMRKKLDSDVLVVTALIDMYAKCNA 436

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +  + +VF     K    W +++ G   N    +A+ LF  M    V+ N+ TF   + A
Sbjct: 437 VSYSFQVFAKTSMKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPA 496

Query: 360 CGHAGLVDKGREI-FESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
             +A L D  + +   S         K+     ++D+  + GSL+ A K   E+P K   
Sbjct: 497 --YAILADLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKD 554

Query: 419 -DVWAALLSSCRLHDDVEMANIAANEI 444
             VW+ L++   +H   E A +  N++
Sbjct: 555 IIVWSVLIAGYGMHGHGETAVLLFNQM 581


>gi|297609253|ref|NP_001062888.2| Os09g0327200 [Oryza sativa Japonica Group]
 gi|255678787|dbj|BAF24802.2| Os09g0327200 [Oryza sativa Japonica Group]
          Length = 739

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 143/443 (32%), Positives = 242/443 (54%), Gaps = 50/443 (11%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           L+  +++ G +  A ++FD +P R + ++N M++GY + G + E+    R+L  +    D
Sbjct: 199 LMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEA----RRLFDAAPVRD 254

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQ-ILKCDVKADDVLYTALVDSYVKGGKTSY 204
            +T++ ++                G +  A+ +     + + V + A+V +Y++      
Sbjct: 255 VFTWTAVVSGYA----------QNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDE 304

Query: 205 ARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS----- 259
           A+ +F+MM  +NV    +M++G+   G +E+A+ +F    +KD V + AM+  YS     
Sbjct: 305 AKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCS 364

Query: 260 -----ISIETAR--------------------KALE----VHCQLIKNVFFEDVKLGSAL 290
                + IE  R                     ALE    +H +LI+  +     +G+AL
Sbjct: 365 EETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNAL 424

Query: 291 VDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY 350
           + MY KCG ++DAR  F+ M++++V +W +MI GY ++G   +ALE+F MM+    +P+ 
Sbjct: 425 LAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDD 484

Query: 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410
           +T +G L+AC H+GLV+KG   F SM  D+ +  K EHY CM+DLLGRAG L +A   + 
Sbjct: 485 ITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMK 544

Query: 411 EMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
           +MP +P+S +W ALL + R+H + E+   AA +IF+L   +  G YV LSN  A++GKW 
Sbjct: 545 DMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPEN-AGMYVLLSNIYASSGKWR 603

Query: 471 SVTELREKMKLRGVLKDTGCSWV 493
              ++R  M+ RGV K  G SW+
Sbjct: 604 DARKMRVMMEERGVKKVPGFSWI 626



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 102/355 (28%), Positives = 181/355 (50%), Gaps = 34/355 (9%)

Query: 76  VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVR 135
           ++P    S K +  H++ G +  A ++F  +P+R+ S YN M+AGY  NG++  + SL R
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 136 KLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA-DDVLYTALVD 194
            +     RPD Y+++ +L A     S          +  A+ L  ++   D V Y  ++ 
Sbjct: 94  AI----PRPDNYSYNTLLHALAVSSS----------LADARGLFDEMPVRDSVTYNVMIS 139

Query: 195 SYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAM 254
           S+   G  S AR  FD+  EK+ +    M++ ++  G VE+A  +F    E D++ +NA+
Sbjct: 140 SHANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNAL 199

Query: 255 IEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKN 314
           + GY +      +A E    L   +   DV   + +V  YA+ G + +ARR+FD    ++
Sbjct: 200 MSGY-VQWGKMSEARE----LFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRD 254

Query: 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374
           VFTWT+++ GY +NG   +A  +F  M E     N V++   ++A     ++D+ +E+F 
Sbjct: 255 VFTWTAVVSGYAQNGMLEEARRVFDAMPE----RNAVSWNAMVAAYIQRRMMDEAKELF- 309

Query: 375 SMERDYSMKP--KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
                 +M P   +  +  M+    +AG LE+A      MP+K ++  WAA+L++
Sbjct: 310 ------NMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQK-DAVSWAAMLAA 357



 Score = 65.5 bits (158), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 111/260 (42%), Gaps = 41/260 (15%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+++H  + + G      +   LL ++ KCG ++ A   F+E+ +R + ++N MIAGY +
Sbjct: 402 GMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYAR 461

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G  +E+L +   + ++  +PD  T   +L A  C  S + + + +    ++      V 
Sbjct: 462 HGFGKEALEIFDMMRTTSTKPDDITLVGVLAA--CSHSGL-VEKGIS-YFYSMHHDFGVT 517

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           A    YT ++D   + G+ + A    D+M +      ++M    +    +    E+ R  
Sbjct: 518 AKPEHYTCMIDLLGRAGRLAEAH---DLMKDMPFEPDSTMWGALLGASRIHRNPELGRSA 574

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
            EK                             I  +  E+  +   L ++YA  GK  DA
Sbjct: 575 AEK-----------------------------IFELEPENAGMYVLLSNIYASSGKWRDA 605

Query: 304 RRVFDHMQQKNV-----FTW 318
           R++   M+++ V     F+W
Sbjct: 606 RKMRVMMEERGVKKVPGFSW 625


>gi|356537359|ref|XP_003537195.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g13770, mitochondrial-like
           [Glycine max]
          Length = 600

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 143/447 (31%), Positives = 250/447 (55%), Gaps = 24/447 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HAH  KT   P   +  +L++ + KC +L  A  + +E+P+R + ++  MI+ Y +
Sbjct: 45  GQRVHAHTIKTHYLPCVYLWTRLIVFYTKCDSLGDARHVLNEMPERNVVSWTAMISAYSQ 104

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP--LPRNLG----RMVHAQI 177
            G   ++LS++ +++ SG   + +TF+            +P  + R LG      +H+ I
Sbjct: 105 RGYASQALSILVQILRSGTESNEFTFA-----------TMPYFMYRFLGFCLREAIHSLI 153

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
           +K + KA   + ++L+D Y K GK   AR +F+ + E++V+  T++ISG+      E+ E
Sbjct: 154 IKLNFKAHVYVGSSLLDMYAKDGKIHEARGIFECLPERDVVSCTAIISGYAQLDLDEELE 213

Query: 238 ---EIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
               + R+ +  + V Y +++   S  +       +VH  L+ +     V L ++L+DMY
Sbjct: 214 LFLRLQREGMXSNYVTYTSVLTALS-GLAALDHGKQVHNHLLCSEVPSFVILQNSLIDMY 272

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ-ECCVQPNYVTF 353
           +KCG +  ARR+FD M+++ V +W +M+ GY K+G   + LELF +M+ E  V+P+ VT 
Sbjct: 273 SKCGNLTYARRIFDTMRERTVISWNAMLVGYSKHGERREVLELFNLMRDENKVKPDSVTV 332

Query: 354 LGALSACGHAGLVDKGREIFESMER-DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
           L  LS C H G  DKG +IF  M     S++P  + Y C+VDLLGRAG +E+A +F+ ++
Sbjct: 333 LAVLSGCSHGGQEDKGMDIFYDMTSGKISVQPDTKRYGCVVDLLGRAGRVEEAFEFIKKI 392

Query: 413 PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSV 472
           P +P++ +   LL +C +H ++ +     + + +    +  G YV LSN  A+AG+W+ V
Sbjct: 393 PFEPSAAICGCLLGACSVHSNLGIGEFVGHRLLEFEPEN-AGNYVILSNLYASAGRWEDV 451

Query: 473 TELREKMKLRGVLKDTGCSWVGTESGL 499
           T LR  M  + V K+ G S +  +  L
Sbjct: 452 TSLRNLMLKKAVTKEPGRSLIEVDQVL 478



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 51/207 (24%), Positives = 89/207 (42%), Gaps = 8/207 (3%)

Query: 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWT 319
           +S    ++   VH   IK  +   V L + L+  Y KC  + DAR V + M ++NV +WT
Sbjct: 37  VSKRAFKEGQRVHAHTIKTHYLPCVYLWTRLIVFYTKCDSLGDARHVLNEMPERNVVSWT 96

Query: 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD 379
           +MI  Y + G  +QAL +   +     + N  TF   +    +  L    RE   S+   
Sbjct: 97  AMISAYSQRGYASQALSILVQILRSGTESNEFTF-ATMPYFMYRFLGFCLREAIHSLIIK 155

Query: 380 YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANI 439
            + K  +   + ++D+  + G + +A      +PE+      A +    +L  D E+   
Sbjct: 156 LNFKAHVYVGSSLLDMYAKDGKIHEARGIFECLPERDVVSCTAIISGYAQLDLDEEL--- 212

Query: 440 AANEIF-KLNANDRPGAYVALSNTLAA 465
              E+F +L        YV  ++ L A
Sbjct: 213 ---ELFLRLQREGMXSNYVTYTSVLTA 236



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 47/175 (26%), Positives = 80/175 (45%), Gaps = 7/175 (4%)

Query: 32  KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHL 91
           +LQ     SN +T TS+ +AL      D   +G ++H H+  + V     +   L+ ++ 
Sbjct: 217 RLQREGMXSNYVTYTSVLTALSGLAALD---HGKQVHNHLLCSEVPSFVILQNSLIDMYS 273

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE-RPDGYTFS 150
           KCG L YA ++FD + +RT+ ++N M+ GY K+G+  E L L   +    + +PD  T  
Sbjct: 274 KCGNLTYARRIFDTMRERTVISWNAMLVGYSKHGERREVLELFNLMRDENKVKPDSVTVL 333

Query: 151 MILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
            +L     C       + +         K  V+ D   Y  +VD   + G+   A
Sbjct: 334 AVLSG---CSHGGQEDKGMDIFYDMTSGKISVQPDTKRYGCVVDLLGRAGRVEEA 385


>gi|297743088|emb|CBI35955.3| unnamed protein product [Vitis vinifera]
          Length = 708

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 147/499 (29%), Positives = 263/499 (52%), Gaps = 73/499 (14%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +H H+ + G + N ++  +L+ ++ K G +  A ++F+ +  R+  ++N M++GY  N  
Sbjct: 157 VHGHVVEMGFQWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYD 216

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR------------------- 167
              +  + R + S+G  P+  T++ +L +   C  +V                       
Sbjct: 217 CHGASEMFRMMGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAV 276

Query: 168 -----------NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216
                      + G+++H  ++K   +    +  +L+  Y K G  + ARI+F  +  KN
Sbjct: 277 VLSVSVDLAAFDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKN 336

Query: 217 VICSTSMISGFMSQGFVEDAEEIF---RKT-----VEKDIVVYNAMIEGY---------- 258
           ++   ++IS +   G+ ++A  IF    KT     V  ++V ++A+I G+          
Sbjct: 337 IVSWNALISSYADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEAL 396

Query: 259 ----------------------SISIETARKAL--EVHCQLIKNVFFEDVKLGSALVDMY 294
                                 S+  E A   L  E+H  +++++   ++ +G+ L++MY
Sbjct: 397 ELFRRMQLAKVKANSVTIASVLSVCAELAALHLGREIHGHVVRSLMDGNILVGNGLINMY 456

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
            K G   +   VF+ ++ K++ +W +M+ GYG +G    A+  F  M +   +P+ VTF+
Sbjct: 457 TKSGSFKEGNLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFV 516

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             LSAC HAGLV +GRE+F+ M +++ ++P+MEHYACMVDLLGRAG L++A K V  MP 
Sbjct: 517 AVLSACSHAGLVAEGRELFDKMIKEFRVEPQMEHYACMVDLLGRAGLLQEASKVVKSMPV 576

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
           +PN+ VW ALL+SCR+H + E+A   A++IF LN+ +  G+Y+ LSN  AA+G+W+   +
Sbjct: 577 EPNACVWGALLNSCRMHKNTEVAEETASQIFNLNS-EIAGSYMLLSNIYAASGRWEDSAK 635

Query: 475 LREKMKLRGVLKDTGCSWV 493
           +R   K +G+ K  G SW+
Sbjct: 636 VRISAKTKGLKKTPGQSWI 654



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 103/494 (20%), Positives = 204/494 (41%), Gaps = 87/494 (17%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLS---AYNYMIAGYL 122
           +IH+ I  TG   +  ++ +++ ++   G +  A ++F+  P    S    +N ++   +
Sbjct: 52  QIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSILRANV 111

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            +G  EE+L +  ++   G   DG+TF ++++A     S     R L R VH  +++   
Sbjct: 112 AHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACALMGS-----RKLCRSVHGHVVEMGF 166

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR- 241
           + +  +   L+  Y K G+   AR VF+ M  ++ +   +M+SG+        A E+FR 
Sbjct: 167 QWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRM 226

Query: 242 ---KTVEKDIVVYNAMIEGY--------------------------------SISIETAR 266
                +E ++V + +++  +                                S+S++ A 
Sbjct: 227 MGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAA 286

Query: 267 --KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK----------- 313
             +   +H  ++K  F   + + ++L+ +Y K G ++ AR +F  ++ K           
Sbjct: 287 FDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTKNIVSWNALISS 346

Query: 314 ----------------------------NVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
                                       NV +W+++I G+   G   +ALELF  MQ   
Sbjct: 347 YADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRMQLAK 406

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
           V+ N VT    LS C     +  GREI   + R   M   +     ++++  ++GS ++ 
Sbjct: 407 VKANSVTIASVLSVCAELAALHLGREIHGHVVRSL-MDGNILVGNGLINMYTKSGSFKEG 465

Query: 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465
              V E  E  +   W  +++   +H   E A    +++ K         +VA+ +  + 
Sbjct: 466 -NLVFEKIENKDLISWNTMVAGYGIHGLGENAIRTFDQMIKDGFEPDGVTFVAVLSACSH 524

Query: 466 AGKWDSVTELREKM 479
           AG      EL +KM
Sbjct: 525 AGLVAEGRELFDKM 538



 Score = 94.7 bits (234), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 92/365 (25%), Positives = 165/365 (45%), Gaps = 53/365 (14%)

Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM-LE--KNVICSTSMI 224
           +L + +H+QI+         L   +V  Y   G  S A+ VF++  +E   N++   S++
Sbjct: 48  HLSQQIHSQIIVTGSHRSAFLAARVVSVYAGFGLVSDAQRVFEVSPIECFSNLLLWNSIL 107

Query: 225 SGFMSQGFVEDAEEIF---RKT-VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVF 280
              ++ G+ E+A EI+   RK  V  D   +  +I   ++ + + +    VH  +++  F
Sbjct: 108 RANVAHGYCEEALEIYCRMRKLGVSADGFTFPLVIRACAL-MGSRKLCRSVHGHVVEMGF 166

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
             ++ +G+ L+ MY K G++DDAR+VF+ M  ++  +W +M+ GY  N + + A E+F M
Sbjct: 167 QWNLHVGNELMGMYGKIGRMDDARKVFERMAVRSCVSWNTMVSGYALNYDCHGASEMFRM 226

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME----------------------- 377
           M    ++PN VT+   LS+    G   +  E+F  M                        
Sbjct: 227 MGSAGLEPNLVTWTSLLSSHARCGQHVETMELFGRMRMRGIGATAEALAVVLSVSVDLAA 286

Query: 378 -------RDYSMKPKMEHYA----CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
                    Y +K   E+Y      ++ L G+ G++  A    LE+  K N   W AL+S
Sbjct: 287 FDEGKVIHGYVVKGGFENYLFVKNSLICLYGKHGNVNAARILFLEIKTK-NIVSWNALIS 345

Query: 427 SCRLHDDVEMANIAANEIFKLNAND-----RPG--AYVALSNTLAAAGKWDSVTELREKM 479
           S   + D+   + A     +L   D     RP   ++ A+    A+ G+ +   EL  +M
Sbjct: 346 S---YADLGWCDEAFAIFLQLEKTDEYPMVRPNVVSWSAVIGGFASKGQGEEALELFRRM 402

Query: 480 KLRGV 484
           +L  V
Sbjct: 403 QLAKV 407



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/177 (24%), Positives = 85/177 (48%), Gaps = 7/177 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH H+ ++ +  N  +   L+ ++ K G+ K    +F+++  + L ++N M+AGY  
Sbjct: 430 GREIHGHVVRSLMDGNILVGNGLINMYTKSGSFKEGNLVFEKIENKDLISWNTMVAGYGI 489

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK-CDV 182
           +G  E ++    +++  G  PDG TF  +L  S C  + +      GR +  +++K   V
Sbjct: 490 HGLGENAIRTFDQMIKDGFEPDGVTFVAVL--SACSHAGLVAE---GRELFDKMIKEFRV 544

Query: 183 KADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
           +     Y  +VD   + G    A ++V  M +E N     ++++        E AEE
Sbjct: 545 EPQMEHYACMVDLLGRAGLLQEASKVVKSMPVEPNACVWGALLNSCRMHKNTEVAEE 601


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 145/433 (33%), Positives = 239/433 (55%), Gaps = 15/433 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD-ELPQRTLSAYNYMIAGYLKN 124
           ++H+ + K G     N+   L   + KCG L  A  +F      R + ++  +I+G ++N
Sbjct: 323 QLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQN 382

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
           G +  ++ L  ++      P+ +T+S +LKAS    S +P P+     +HAQ++K + + 
Sbjct: 383 GDIPLAVVLFSRMREDRVMPNEFTYSAMLKASL---SILP-PQ-----IHAQVIKTNYQH 433

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
              + TAL+ SY K G T  A  +F M+ +K+V+  ++M+S     G  E A  +F K  
Sbjct: 434 IPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMA 493

Query: 245 EKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
            + I       +++I+  +       +  + H   IK  + + + + SALV MY++ G I
Sbjct: 494 IQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNI 553

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           D A+ VF+    +++ +W SMI GY ++G   +A+E F  M+   +Q + VTFL  +  C
Sbjct: 554 DSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGC 613

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            H GLV +G++ F+SM RD+ + P MEHYACMVDL  RAG L++ +  + +MP    + V
Sbjct: 614 THNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMV 673

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W  LL +CR+H +VE+   +A+++  L  +D    YV LSN  AAAGKW    E+R+ M 
Sbjct: 674 WRTLLGACRVHKNVELGKFSADKLLSLEPHD-SSTYVLLSNIYAAAGKWKERDEVRKLMD 732

Query: 481 LRGVLKDTGCSWV 493
            R V K+ GCSW+
Sbjct: 733 YRKVKKEAGCSWI 745



 Score =  125 bits (313), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 196/398 (49%), Gaps = 23/398 (5%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           NP T  S+ SA+      D    G ++HA   K G + +  +   L+ ++ KCG ++ A 
Sbjct: 200 NPFTFASVLSAVASQGALD---LGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAK 256

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
            +F+ +  R + ++N ++AG   N    E+L L  +  ++  +    T++ ++K    C 
Sbjct: 257 SVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKL---CA 313

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML-EKNVIC 219
           +   L   L R +H+ +LK        + TAL D+Y K G+ + A  +F M    +NV+ 
Sbjct: 314 NLKQLA--LARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVS 371

Query: 220 STSMISGFMSQGFVEDAEEIFRKTVEKDIV----VYNAMIEGYSISIETARKALEVHCQL 275
            T++ISG +  G +  A  +F +  E  ++     Y+AM++  S+SI       ++H Q+
Sbjct: 372 WTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA-SLSILPP----QIHAQV 426

Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
           IK  +     +G+AL+  Y+K G  +DA  +F  ++QK+V  W++M+  + + G+   A 
Sbjct: 427 IKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGAT 486

Query: 336 ELFCMMQECCVQPNYVTFLGALSACG--HAGLVDKGREIFESMERDYSMKPKMEHYACMV 393
            LF  M    ++PN  T    + AC    AG VD+GR+ F ++   Y     +   + +V
Sbjct: 487 YLFNKMAIQGIKPNEFTISSVIDACACPSAG-VDQGRQ-FHAISIKYRYHDAICVSSALV 544

Query: 394 DLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
            +  R G+++ A + V E     +   W +++S    H
Sbjct: 545 SMYSRKGNIDSA-QIVFERQTDRDLVSWNSMISGYAQH 581



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 156/344 (45%), Gaps = 15/344 (4%)

Query: 103 FDELPQRTLS-AYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161
            DE+P+R  +   N ++  Y + G V E L         G   D  T S +LKA   CRS
Sbjct: 55  LDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKA---CRS 111

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDV-LYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
            VP  R LG  +H   +KC     +V   T+LVD Y+K G       VF+ M +KNV+  
Sbjct: 112 -VP-DRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTW 169

Query: 221 TSMISGFM-SQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE----VHCQL 275
           TS+++G   +Q   E     FR   E   +  N       +S   ++ AL+    VH Q 
Sbjct: 170 TSLLTGCAHAQMHSEVMALFFRMRAEG--IWPNPFTFASVLSAVASQGALDLGQRVHAQS 227

Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
           +K      V + ++L++MYAKCG ++DA+ VF+ M+ +++ +W +++ G   N    +AL
Sbjct: 228 VKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEAL 287

Query: 336 ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDL 395
           +LF   +    +    T+   +  C +   +   R++   + + +           + D 
Sbjct: 288 QLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLK-HGFHLTGNVMTALADA 346

Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANI 439
             + G L  AL          N   W A++S C  + D+ +A +
Sbjct: 347 YSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVV 390



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 8/140 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G + HA   K        +S  L+ ++ + G +  A  +F+    R L ++N MI+GY +
Sbjct: 521 GRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQ 580

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G   +++   R++ +SG + DG TF  ++   T     V   +    MV       D K
Sbjct: 581 HGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVR------DHK 634

Query: 184 ADDVL--YTALVDSYVKGGK 201
            +  +  Y  +VD Y + GK
Sbjct: 635 INPTMEHYACMVDLYSRAGK 654


>gi|359497567|ref|XP_002265980.2| PREDICTED: pentatricopeptide repeat-containing protein At4g16835,
           mitochondrial-like, partial [Vitis vinifera]
          Length = 599

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 147/439 (33%), Positives = 234/439 (53%), Gaps = 50/439 (11%)

Query: 94  GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
           G +K A Q+FD +P+  + +YN M+A YL N  VE +     +              M +
Sbjct: 51  GKIKVARQLFDRIPEPDIFSYNIMLACYLHNADVESARLFFDQ--------------MPV 96

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKA-DDVLYTALVDSYVKGGKTSYARIVFDMM 212
           K +    + +      G M  A+ L   +   + V + A++  YV+ G    A+ +F++ 
Sbjct: 97  KDTASWNTMISGFSQNGMMDQARELFLVMPVRNSVSWNAMISGYVESGDLDLAKQLFEVA 156

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY-------------- 258
             ++V+  T+MI+GFM  G +E AE+ F +   K++V +NAMI GY              
Sbjct: 157 PVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVTWNAMIAGYIENCQAENGLKLFK 216

Query: 259 ------------SIS--------IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
                       S+S        +   +   +VH  + K+    ++  G++L+ MY KCG
Sbjct: 217 RMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLICKSPVSWNITAGTSLLSMYCKCG 276

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            ++DA ++F  M QK+V TW +MI GY ++G   +AL LF  M++  ++P+++TF+  LS
Sbjct: 277 DLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVLS 336

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC HAG VD G E F SM RDY ++ K +HY C+VDLLGR G L +A+  + +MP KP+S
Sbjct: 337 ACNHAGFVDLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGKLVEAVDLIKKMPFKPHS 396

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            ++  LL +CR+H ++E+A  AA  +  L+     G YV L+N  AA  +WD V  +R  
Sbjct: 397 AIFGTLLGACRIHKNLELAEFAAKNLLNLDPESAAG-YVQLANVYAAMNRWDHVAMVRRS 455

Query: 479 MKLRGVLKDTGCSWVGTES 497
           MK   V+K  G SW+  +S
Sbjct: 456 MKDNKVIKTPGYSWIEVKS 474



 Score =  112 bits (279), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 89/360 (24%), Positives = 159/360 (44%), Gaps = 52/360 (14%)

Query: 79  NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL-KNGQVEESLSLVRKL 137
           N   S +++  H++ G L  A ++F+ +  +T   +N M+AGY  + G+++    + R+L
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYSNRRGKIK----VARQL 59

Query: 138 VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYV 197
                 PD ++++++L                                          Y+
Sbjct: 60  FDRIPEPDIFSYNIMLAC----------------------------------------YL 79

Query: 198 KGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEG 257
                  AR+ FD M  K+     +MISGF   G ++ A E+F     ++ V +NAMI G
Sbjct: 80  HNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQARELFLVMPVRNSVSWNAMISG 139

Query: 258 YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT 317
           Y   +E+    L++  QL +      V   +A++  + K GKI+ A + F+ M  KN+ T
Sbjct: 140 Y---VESGD--LDLAKQLFEVAPVRSVVAWTAMITGFMKFGKIELAEKYFEEMPMKNLVT 194

Query: 318 WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377
           W +MI GY +N      L+LF  M E   +PN  +    L  C +   +  G+++ + + 
Sbjct: 195 WNAMIAGYIENCQAENGLKLFKRMVESGFRPNPSSLSSVLLGCSNLSALKLGKQVHQLIC 254

Query: 378 RDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           +   +   +     ++ +  + G LE A K  L MP+K +   W A++S    H   E A
Sbjct: 255 KS-PVSWNITAGTSLLSMYCKCGDLEDAWKLFLVMPQK-DVVTWNAMISGYAQHGAGEKA 312



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/255 (25%), Positives = 116/255 (45%), Gaps = 22/255 (8%)

Query: 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQL 275
           NVI S  +I+  +  G +  A  +F     K  V +N+M+ GYS      R  ++V  QL
Sbjct: 4   NVISSNRVITNHIRSGDLNSALRVFESMTVKTTVTWNSMLAGYS----NRRGKIKVARQL 59

Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
              +   D+   + ++  Y     ++ AR  FD M  K+  +W +MI G+ +NG  +QA 
Sbjct: 60  FDRIPEPDIFSYNIMLACYLHNADVESARLFFDQMPVKDTASWNTMISGFSQNGMMDQAR 119

Query: 336 ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP--KMEHYACMV 393
           ELF +M       N V++   +S    +G +D  +++FE       + P   +  +  M+
Sbjct: 120 ELFLVMP----VRNSVSWNAMISGYVESGDLDLAKQLFE-------VAPVRSVVAWTAMI 168

Query: 394 DLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS----SCRLHDDVEMANIAANEIFKLNA 449
               + G +E A K+  EMP K N   W A+++    +C+  + +++        F+ N 
Sbjct: 169 TGFMKFGKIELAEKYFEEMPMK-NLVTWNAMIAGYIENCQAENGLKLFKRMVESGFRPNP 227

Query: 450 NDRPGAYVALSNTLA 464
           +      +  SN  A
Sbjct: 228 SSLSSVLLGCSNLSA 242



 Score = 70.1 bits (170), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 54/168 (32%), Positives = 84/168 (50%), Gaps = 15/168 (8%)

Query: 35  NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           N  SLS+ L   S  SAL+          G ++H  I K+ V  N      LL ++ KCG
Sbjct: 226 NPSSLSSVLLGCSNLSALK---------LGKQVHQLICKSPVSWNITAGTSLLSMYCKCG 276

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
            L+ A ++F  +PQ+ +  +N MI+GY ++G  E++L L  K+   G +PD  TF  +L 
Sbjct: 277 DLEDAWKLFLVMPQKDVVTWNAMISGYAQHGAGEKALYLFDKMRDEGMKPDWITFVAVL- 335

Query: 155 ASTCCRSNVPLPRNLG-RMVHAQILKCDVKADDVLYTALVDSYVKGGK 201
            S C  +      +LG    ++ +    V+A    YT +VD   +GGK
Sbjct: 336 -SACNHAGFV---DLGIEYFNSMVRDYGVEAKPDHYTCVVDLLGRGGK 379


>gi|356504050|ref|XP_003520812.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Glycine max]
          Length = 753

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 142/402 (35%), Positives = 223/402 (55%), Gaps = 15/402 (3%)

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           Q+FDE+ +R +  +  +I+G  +N   E+ L L  ++      P+  T+   L A +  +
Sbjct: 44  QVFDEMLERNVVTWTAVISGLAQNEFYEDGLRLFDQMRRGSVSPNSLTYLSALMACSGLQ 103

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           + +      GR +H  + K  +++D  + +AL+D Y K G    A  +F+   E + +  
Sbjct: 104 ALLE-----GRKIHGLLWKLGMQSDLCIESALMDLYSKCGSLEEAWEIFESAEELDDVSL 158

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE------GYSISIETARKALEVHCQ 274
           T ++  FM  G  E+A +IF + V+  I V   M+       G   S+   +   ++H  
Sbjct: 159 TVILVAFMQNGLEEEAIQIFMRMVKLGIEVDPNMVSAILGVFGVGTSLTLGK---QIHSL 215

Query: 275 LIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQA 334
           +IK  F +++ + + L++MY+KCG + D+ +VF  M QKN  +W S+I  Y + G+  +A
Sbjct: 216 IIKKNFIQNLFVSNGLINMYSKCGDLYDSLQVFHEMTQKNSVSWNSVIAAYARYGDGFRA 275

Query: 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394
           L+ +  M+   +    VTFL  L AC HAGLV+KG E  ESM RD+ + P+ EHYAC+VD
Sbjct: 276 LQFYDDMRVEGIALTDVTFLSLLHACSHAGLVEKGMEFLESMTRDHGLSPRSEHYACVVD 335

Query: 395 LLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG 454
           +LGRAG L++A KF+  +PE P   VW ALL +C +H D EM   AAN++F L   D P 
Sbjct: 336 MLGRAGLLKEAKKFIEGLPENPGVLVWQALLGACSIHGDSEMGKYAANQLF-LATPDSPA 394

Query: 455 AYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
            YV ++N  ++ GKW       +KMK  GV K+ G SWV  E
Sbjct: 395 PYVLMANIYSSEGKWKERARSIKKMKEMGVAKEVGISWVEIE 436



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 64/276 (23%), Positives = 138/276 (50%), Gaps = 21/276 (7%)

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF---- 240
           D V + A++  +++       R VFD MLE+NV+  T++ISG     F ED   +F    
Sbjct: 22  DTVSWNAIISGFLRNRDCDTGRQVFDEMLERNVVTWTAVISGLAQNEFYEDGLRLFDQMR 81

Query: 241 RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           R +V  + + Y + +   S  ++   +  ++H  L K     D+ + SAL+D+Y+KCG +
Sbjct: 82  RGSVSPNSLTYLSALMACS-GLQALLEGRKIHGLLWKLGMQSDLCIESALMDLYSKCGSL 140

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ--PNYVTFLGALS 358
           ++A  +F+  ++ +  + T ++  + +NG   +A+++F  M +  ++  PN V+ +  L 
Sbjct: 141 EEAWEIFESAEELDDVSLTVILVAFMQNGLEEEAIQIFMRMVKLGIEVDPNMVSAI--LG 198

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
             G    +  G++I   + +   ++        ++++  + G L  +L+   EM +K NS
Sbjct: 199 VFGVGTSLTLGKQIHSLIIKKNFIQNLFVSNG-LINMYSKCGDLYDSLQVFHEMTQK-NS 256

Query: 419 DVWAALLS----------SCRLHDDVEMANIAANEI 444
             W ++++          + + +DD+ +  IA  ++
Sbjct: 257 VSWNSVIAAYARYGDGFRALQFYDDMRVEGIALTDV 292



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 76/142 (53%), Gaps = 2/142 (1%)

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
           +L  ++  +D    +A++  + +    D  R+VFD M ++NV TWT++I G  +N     
Sbjct: 13  KLFDHMPVKDTVSWNAIISGFLRNRDCDTGRQVFDEMLERNVVTWTAVISGLAQNEFYED 72

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMV 393
            L LF  M+   V PN +T+L AL AC     + +GR+I   + +   M+  +   + ++
Sbjct: 73  GLRLFDQMRRGSVSPNSLTYLSALMACSGLQALLEGRKIHGLLWK-LGMQSDLCIESALM 131

Query: 394 DLLGRAGSLEQALKFVLEMPEK 415
           DL  + GSLE+A + + E  E+
Sbjct: 132 DLYSKCGSLEEAWE-IFESAEE 152



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 64/283 (22%), Positives = 125/283 (44%), Gaps = 32/283 (11%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G KIH  + K G++ +  I   L+ L+ KCG+L+ A ++F+   +    +   ++  +++
Sbjct: 108 GRKIHGLLWKLGMQSDLCIESALMDLYSKCGSLEEAWEIFESAEELDDVSLTVILVAFMQ 167

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  EE++ +  ++V  G   D    S IL         V     LG+ +H+ I+K +  
Sbjct: 168 NGLEEEAIQIFMRMVKLGIEVDPNMVSAILGV-----FGVGTSLTLGKQIHSLIIKKNFI 222

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +  +   L++ Y K G    +  VF  M +KN +   S+I+ +   G      + FR  
Sbjct: 223 QNLFVSNGLINMYSKCGDLYDSLQVFHEMTQKNSVSWNSVIAAYARYG------DGFRA- 275

Query: 244 VEKDIVVYNAM-IEGYSISIETARKALEV--HCQLIKN--VFFEDVKLGSAL-------- 290
               +  Y+ M +EG +++  T    L    H  L++    F E +     L        
Sbjct: 276 ----LQFYDDMRVEGIALTDVTFLSLLHACSHAGLVEKGMEFLESMTRDHGLSPRSEHYA 331

Query: 291 --VDMYAKCGKIDDARRVFDHM-QQKNVFTWTSMIDGYGKNGN 330
             VDM  + G + +A++  + + +   V  W +++     +G+
Sbjct: 332 CVVDMLGRAGLLKEAKKFIEGLPENPGVLVWQALLGACSIHGD 374


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 137/413 (33%), Positives = 241/413 (58%), Gaps = 15/413 (3%)

Query: 94  GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVS-SGERPDGYTFSMI 152
           G ++ A ++FDE+P + + ++N MI+GY++ G  +E+L L ++++  +  RPD  T  M+
Sbjct: 169 GYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDEST--MV 226

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
              S C +S+      LGR VH+ I      ++  +  AL+D Y K G+   A  +FD +
Sbjct: 227 TVVSACAQSD---SIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGL 283

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE-----KDIVVYNAMIEGYSISIETARK 267
             K+VI   ++I G+      ++A  +F++ +       D+ + + +     +      +
Sbjct: 284 WNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGR 343

Query: 268 ALEVHC-QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH-MQQKNVFTWTSMIDGY 325
            + V+  + +K V      L ++L+DMYAKCG ID A++VFD  M  +++ TW +MI G+
Sbjct: 344 WIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGF 403

Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
             +G  N A ++F  M+   ++P+ +TF+G LSAC H+G++D GR IF SM R Y + PK
Sbjct: 404 AMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRGYEITPK 463

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIF 445
           +EHY CM+DLLG +G  ++A + +  MP +P+  +W +LL +C++H ++E+    A ++ 
Sbjct: 464 LEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGESFAKKLI 523

Query: 446 KLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDT-GCSWVGTES 497
           K+   +  G+YV LSN  AAAG+W+ V ++R  +  +G+ K   GCS +  +S
Sbjct: 524 KIEPGN-SGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDS 575



 Score =  169 bits (428), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 117/411 (28%), Positives = 200/411 (48%), Gaps = 57/411 (13%)

Query: 67  IHAHITKTGVKPNTNISI-KLL---ILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           IHA + KTG+  NTN ++ KLL   ++        YA  +FD + +  L  +N M  G+ 
Sbjct: 7   IHAQMIKTGLH-NTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGHA 65

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            +     +L L   ++S G  PD YTF  +LK  +C +S +   R  G+ +H  +LK   
Sbjct: 66  LSSDPVSALKLYLVMISLGLLPDSYTFPFLLK--SCAKSKI---RKEGQQIHGHVLKLGF 120

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             D  ++T+L+  Y + G+   AR VFD+   ++V+  T++I+G++S+G++E A+++F +
Sbjct: 121 DLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDE 180

Query: 243 TVEKDIVVYNAMIEGY--------------------------------------SISIET 264
              KD+V +NAMI GY                                      S SIE 
Sbjct: 181 IPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIEL 240

Query: 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
            R    VH  +  + F  ++K+ +AL+D+Y+K G+++ A  +FD +  K+V +W ++I G
Sbjct: 241 GR---HVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGG 297

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP 384
           Y       +AL LF  M      PN VT L  L AC H G +D GR I   + +   +K 
Sbjct: 298 YTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINK--KLKG 355

Query: 385 KMEHYA----CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
            + + +     ++D+  + G ++ A +         +   W A++S   +H
Sbjct: 356 VVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMH 406



 Score = 81.6 bits (200), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 85/325 (26%), Positives = 136/325 (41%), Gaps = 57/325 (17%)

Query: 58  SDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYM 117
           SD+   G  +H+ I   G   N  I   L+ L+ K G ++ A ++FD L  + + ++N +
Sbjct: 235 SDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTL 294

Query: 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQI 177
           I GY      +E+L L ++++ SGE P+  T   IL A  C         ++GR +H  I
Sbjct: 295 IGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPA--CAHLGAI---DIGRWIHVYI 349

Query: 178 ---LKCDVKADDVLYTALVDSYVKGGKTSYARIVFD-MMLEKNVICSTSMISGFMSQGFV 233
              LK  V     L T+L+D Y K G    A+ VFD  M  +++    +MISGF   G  
Sbjct: 350 NKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRA 409

Query: 234 EDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSA 289
             A +IF +     +E D + +  ++   S S                            
Sbjct: 410 NAAFDIFSRMRMNGIEPDDITFVGLLSACSHS---------------------------- 441

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFT-----WTSMIDGYGKNGNPNQALELFCMMQEC 344
                   G +D  R +F  M +    T     +  MID  G +G   +A E+   M   
Sbjct: 442 --------GMLDLGRNIFRSMTRGYEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMP-- 491

Query: 345 CVQPNYVTFLGALSACGHAGLVDKG 369
            ++P+ V +   L AC   G ++ G
Sbjct: 492 -MEPDGVIWCSLLKACKIHGNLELG 515



 Score = 49.3 bits (116), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 48/218 (22%), Positives = 92/218 (42%), Gaps = 17/218 (7%)

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD---ARRVFDHMQQKNVFTWTSMIDGYGK 327
           +H Q+IK          S L++        D    A  VFD +Q+ N+  W +M  G+  
Sbjct: 7   IHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGHAL 66

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           + +P  AL+L+ +M    + P+  TF   L +C  + +  +G++I   + +       + 
Sbjct: 67  SSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLK-LGFDLDIY 125

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
            +  ++ +  + G LE A K V ++    +   + AL++       +E A    +EI   
Sbjct: 126 VHTSLISMYAQNGRLEDARK-VFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEI--- 181

Query: 448 NANDRPGAYVALSNTLAAA----GKWDSVTELREKMKL 481
                PG  V   N + +     G +    EL ++M +
Sbjct: 182 -----PGKDVVSWNAMISGYVETGNYKEALELFKEMMM 214


>gi|125579001|gb|EAZ20147.1| hypothetical protein OsJ_35746 [Oryza sativa Japonica Group]
          Length = 601

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 145/471 (30%), Positives = 261/471 (55%), Gaps = 16/471 (3%)

Query: 32  KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHL 91
           K+  ++ +   +T +SL  AL    + D    G ++H +  K  +  +  ++  L+ ++ 
Sbjct: 132 KMSEHNVMPGSITLSSLLPALVELGSFDL---GREVHGYSIKRAMDLDIFVANSLVDMYA 188

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           K G+L+ A  +F+++  R + ++N MIA  ++NG   E+  LV  +  SGE P+  T   
Sbjct: 189 KFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVN 248

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           +L A  C R        +G+ +HA  ++  +  D  +  AL+D Y K G+ S AR +F+ 
Sbjct: 249 VLPA--CARMA---SLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIFER 303

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARK 267
             EK+ +   ++I G+    +  ++  +F++     ++ D V +   +   + ++   + 
Sbjct: 304 S-EKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACT-NLSVFKH 361

Query: 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
             E+HC L++ +      L ++L+D+Y K G +  A ++F+ + +K+V +W +MI GYG 
Sbjct: 362 GKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGM 421

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           +G  + A ELF +M+   +  ++V+++  L+AC H GLVDKG++ F  M    +++P+  
Sbjct: 422 HGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQ-NIEPQQM 480

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           HYACMVDLLGRAG L +  + + +MP   NSDVW ALL +CR+H ++E+A  AA  +F+L
Sbjct: 481 HYACMVDLLGRAGQLSKCAEIIRDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFEL 540

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498
              +  G Y  + N  A  G+W+   ++R+ MK R V K+   SWV  + G
Sbjct: 541 KP-EHSGYYTLMINMYAETGRWNEANKIRKLMKSRKVQKNPAYSWVQDQDG 590



 Score =  132 bits (332), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 108/416 (25%), Positives = 201/416 (48%), Gaps = 21/416 (5%)

Query: 42  PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQ 101
           PL   SL S +          +GL IHA   K G+    N++  L+ ++ K G ++ + Q
Sbjct: 38  PLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQ 97

Query: 102 MFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161
           +FD + ++   ++N  I  +L  G   + L + RK+      P   T S +L A     S
Sbjct: 98  VFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGS 157

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
                 +LGR VH   +K  +  D  +  +LVD Y K G    A  +F+ M ++NV+   
Sbjct: 158 -----FDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWN 212

Query: 222 SMISGFMSQGFVEDAEEI---FRKTVE--KDIVVYNAMIEGYSISIETARKALEVHCQLI 276
           +MI+  +  G   +A  +    +K+ E    I + N +       + + +   ++H   I
Sbjct: 213 AMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPA--CARMASLKMGKQIHAWSI 270

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           +     D+ + +AL+DMY+KCG++  AR +F+  ++ +V ++ ++I GY ++    ++L 
Sbjct: 271 RRGLMFDLFISNALIDMYSKCGQLSLARNIFERSEKDDV-SYNTLILGYSQSPWCFESLL 329

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVDL 395
           LF  M+   +  + V+F+GALSAC +  +   G+EI   +  R  S  P + +   ++DL
Sbjct: 330 LFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVRRLLSGHPFLSN--SLLDL 387

Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451
             + G L  A K   ++ +K  +  W  ++    +H  +++    A E+F+L   D
Sbjct: 388 YTKGGMLVTASKIFNKITKKDVAS-WNTMILGYGMHGQIDI----AFELFELMKGD 438



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 88/321 (27%), Positives = 150/321 (46%), Gaps = 22/321 (6%)

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           +P+R + ++N +++ +L NG   ++    R+ + S  R  G+  ++    S         
Sbjct: 1   MPERDVVSWNSLVSAFLVNGMFHDA----RRALVSMMRS-GFPLNVASLVSVVPACGTEQ 55

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
               G  +HA  +K  +     L  ALVD Y K G    +  VFD MLE+N +   S I 
Sbjct: 56  EEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIG 115

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIV--------VYNAMIEGYSISIETARKALEVHCQLIK 277
            F++ GF  D   +FRK  E +++        +  A++E  S  +       EVH   IK
Sbjct: 116 CFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDL-----GREVHGYSIK 170

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
                D+ + ++LVDMYAK G ++ A  +F+ M+ +NV +W +MI    +NG   +A  L
Sbjct: 171 RAMDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRL 230

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE-SMERDYSMKPKMEHYACMVDLL 396
              MQ+    PN +T +  L AC     +  G++I   S+ R       + +   ++D+ 
Sbjct: 231 VTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISN--ALIDMY 288

Query: 397 GRAGSLEQALKFVLEMPEKPN 417
            + G L  A + + E  EK +
Sbjct: 289 SKCGQLSLA-RNIFERSEKDD 308



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 67/243 (27%), Positives = 108/243 (44%), Gaps = 20/243 (8%)

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARK---A 268
           M E++V+   S++S F+  G   DA       +     +  A +     +  T ++    
Sbjct: 1   MPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFPLNVASLVSVVPACGTEQEEKFG 60

Query: 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
           L +H   +K      V L +ALVDMY K G ++ + +VFD M ++N  +W S I  +   
Sbjct: 61  LSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCFLNA 120

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G     L +F  M E  V P  +T    L A    G  D GRE+       YS+K  M+ 
Sbjct: 121 GFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREV-----HGYSIKRAMDL 175

Query: 389 ----YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
                  +VD+  + GSLE+A     +M ++ N   W A++++        + N A  E 
Sbjct: 176 DIFVANSLVDMYAKFGSLEKASTIFEQMKDR-NVVSWNAMIANL-------VQNGAETEA 227

Query: 445 FKL 447
           F+L
Sbjct: 228 FRL 230


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 143/451 (31%), Positives = 238/451 (52%), Gaps = 22/451 (4%)

Query: 64  GLKIHAHITKTGVKPNTN----------ISIKLLILHLKCGALKYAGQMFDELPQRTLSA 113
           G  +HA+  +  + PN N          +   LL ++ KCG+L YA ++FD +P R    
Sbjct: 132 GTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVT 191

Query: 114 YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR-NLGRM 172
           ++ +I G++   ++ ++  L + +++      G  F      ++  R+   L    +G  
Sbjct: 192 WSALIGGFVLCSRMTQAFLLFKAMLA-----QGLCFLSPTSIASALRACASLDHLRMGEQ 246

Query: 173 VHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGF 232
           +HA + K  V AD     +L+  Y K G    A  +FD M  K+ +  ++++SG++  G 
Sbjct: 247 LHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGR 306

Query: 233 VEDAEEIFRK----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGS 288
            E+A  +F+K     VE D     ++I   S  +   +     H  +I      +  + +
Sbjct: 307 AEEAFLVFKKMQACNVEPDAATMVSLIPACS-HLAALQHGRCSHGSVIIRGLASETSICN 365

Query: 289 ALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348
           AL+DMYAKCG+ID +R+VF+ M  +++ +W +MI GYG +G   +A  LF  M      P
Sbjct: 366 ALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPP 425

Query: 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKF 408
           + VTF+  LSAC H+GLV +G+  F  M   Y + P+MEHY CMVDLL R G L++A +F
Sbjct: 426 DGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEF 485

Query: 409 VLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGK 468
           +  MP + +  VW ALL +CR++ ++++    +  I +L   +  G +V LSN  +AAG+
Sbjct: 486 IQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGP-EGTGNFVLLSNIYSAAGR 544

Query: 469 WDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           +D   E+R   K++G  K  GCSW+     L
Sbjct: 545 FDEAAEVRIIQKVQGFKKSPGCSWIEINGSL 575



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 173/372 (46%), Gaps = 50/372 (13%)

Query: 20  YTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPN 79
           + + P N TFP  L+   +L++            H+        G  IH H    G++ +
Sbjct: 4   HRVAPNNYTFPFALKACSALAD------------HHC-------GRAIHRHAIHAGLQAD 44

Query: 80  TNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLS--LVRKL 137
             +S  LL +++KC  L  A  +F  +P R L A+N M+AGY  +G    +++  L  ++
Sbjct: 45  LFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQM 104

Query: 138 VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRM-----VHAQILKCDVK--------- 183
                RP+  T   +L          PL    G +     VHA  ++  +          
Sbjct: 105 QMHRLRPNASTLVALL----------PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKL 154

Query: 184 ADDVLY-TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            D VL  TAL+D Y K G   YAR VFD M  +N +  +++I GF+    +  A  +F+ 
Sbjct: 155 TDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKA 214

Query: 243 TVEKDIVVYNAMIEGYSI----SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
            + + +   +      ++    S++  R   ++H  L K+    D+  G++L+ MYAK G
Sbjct: 215 MLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAG 274

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            ID A  +FD M  K+  ++++++ GY +NG   +A  +F  MQ C V+P+  T +  + 
Sbjct: 275 LIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIP 334

Query: 359 ACGHAGLVDKGR 370
           AC H   +  GR
Sbjct: 335 ACSHLAALQHGR 346



 Score = 95.5 bits (236), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 105/198 (53%), Gaps = 5/198 (2%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L+ TS+ SAL+   + D    G ++HA + K+GV  +      LL ++ K G +  A  +
Sbjct: 223 LSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIAL 282

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           FDE+  +   +Y+ +++GY++NG+ EE+  + +K+ +    PD  T   ++ A   C   
Sbjct: 283 FDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPA---CSHL 339

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
             L    GR  H  ++   + ++  +  AL+D Y K G+   +R VF+MM  ++++   +
Sbjct: 340 AALQH--GRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNT 397

Query: 223 MISGFMSQGFVEDAEEIF 240
           MI+G+   G  ++A  +F
Sbjct: 398 MIAGYGIHGLGKEATALF 415



 Score = 58.2 bits (139), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 9/115 (7%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           + A S  +ALQH         G   H  +   G+   T+I   L+ ++ KCG +  + Q+
Sbjct: 333 IPACSHLAALQH---------GRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQV 383

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           F+ +P R + ++N MIAGY  +G  +E+ +L  ++ + G  PDG TF  +L A +
Sbjct: 384 FNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACS 438


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  252 bits (644), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 143/451 (31%), Positives = 238/451 (52%), Gaps = 22/451 (4%)

Query: 64  GLKIHAHITKTGVKPNTN----------ISIKLLILHLKCGALKYAGQMFDELPQRTLSA 113
           G  +HA+  +  + PN N          +   LL ++ KCG+L YA ++FD +P R    
Sbjct: 132 GTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVT 191

Query: 114 YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR-NLGRM 172
           ++ +I G++   ++ ++  L + +++      G  F      ++  R+   L    +G  
Sbjct: 192 WSALIGGFVLCSRMTQAFLLFKAMLA-----QGLCFLSPTSIASALRACASLDHLRMGEQ 246

Query: 173 VHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGF 232
           +HA + K  V AD     +L+  Y K G    A  +FD M  K+ +  ++++SG++  G 
Sbjct: 247 LHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGR 306

Query: 233 VEDAEEIFRK----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGS 288
            E+A  +F+K     VE D     ++I   S  +   +     H  +I      +  + +
Sbjct: 307 AEEAFLVFKKMQACNVEPDAATMVSLIPACS-HLAALQHGRCSHGSVIIRGLASETSICN 365

Query: 289 ALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348
           AL+DMYAKCG+ID +R+VF+ M  +++ +W +MI GYG +G   +A  LF  M      P
Sbjct: 366 ALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPP 425

Query: 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKF 408
           + VTF+  LSAC H+GLV +G+  F  M   Y + P+MEHY CMVDLL R G L++A +F
Sbjct: 426 DGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEF 485

Query: 409 VLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGK 468
           +  MP + +  VW ALL +CR++ ++++    +  I +L   +  G +V LSN  +AAG+
Sbjct: 486 IQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGP-EGTGNFVLLSNIYSAAGR 544

Query: 469 WDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           +D   E+R   K++G  K  GCSW+     L
Sbjct: 545 FDEAAEVRIIQKVQGFKKSPGCSWIEINGSL 575



 Score =  141 bits (356), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 173/372 (46%), Gaps = 50/372 (13%)

Query: 20  YTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPN 79
           + + P N TFP  L+   +L++            H+        G  IH H    G++ +
Sbjct: 4   HRVAPNNYTFPFALKACSALAD------------HHC-------GRAIHRHAIHAGLQAD 44

Query: 80  TNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLS--LVRKL 137
             +S  LL +++KC  L  A  +F  +P R L A+N M+AGY  +G    +++  L  ++
Sbjct: 45  LFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQM 104

Query: 138 VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRM-----VHAQILKCDVK--------- 183
                RP+  T   +L          PL    G +     VHA  ++  +          
Sbjct: 105 QMHRLRPNASTLVALL----------PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKL 154

Query: 184 ADDVLY-TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            D VL  TAL+D Y K G   YAR VFD M  +N +  +++I GF+    +  A  +F+ 
Sbjct: 155 TDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKA 214

Query: 243 TVEKDIVVYNAMIEGYSI----SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
            + + +   +      ++    S++  R   ++H  L K+    D+  G++L+ MYAK G
Sbjct: 215 MLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAG 274

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            ID A  +FD M  K+  ++++++ GY +NG   +A  +F  MQ C V+P+  T +  + 
Sbjct: 275 LIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIP 334

Query: 359 ACGHAGLVDKGR 370
           AC H   +  GR
Sbjct: 335 ACSHLAALQHGR 346



 Score = 95.1 bits (235), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 55/198 (27%), Positives = 105/198 (53%), Gaps = 5/198 (2%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L+ TS+ SAL+   + D    G ++HA + K+GV  +      LL ++ K G +  A  +
Sbjct: 223 LSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIAL 282

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           FDE+  +   +Y+ +++GY++NG+ EE+  + +K+ +    PD  T   ++ A   C   
Sbjct: 283 FDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPA---CSHL 339

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
             L    GR  H  ++   + ++  +  AL+D Y K G+   +R VF+MM  ++++   +
Sbjct: 340 AALQH--GRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNT 397

Query: 223 MISGFMSQGFVEDAEEIF 240
           MI+G+   G  ++A  +F
Sbjct: 398 MIAGYGIHGLGKEATALF 415



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 9/115 (7%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           + A S  +ALQH         G   H  +   G+   T+I   L+ ++ KCG +  + Q+
Sbjct: 333 IPACSHLAALQH---------GRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQV 383

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           F+ +P R + ++N MIAGY  +G  +E+ +L  ++ + G  PDG TF  +L A +
Sbjct: 384 FNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACS 438


>gi|449468588|ref|XP_004152003.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21065-like [Cucumis sativus]
          Length = 558

 Score =  252 bits (643), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 154/438 (35%), Positives = 244/438 (55%), Gaps = 18/438 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGA---LKYAGQMFDELPQRTLSAYNYMIAGYL 122
           ++H +I K+  K N  +S++ L+L     A   L YA  +F  +P     AYN +I  + 
Sbjct: 6   RLHCYIIKSS-KQNDPLSLRTLLLSCVAAAPESLSYARYVFSRIPSPDTIAYNTIIRSHS 64

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +      SL     + S+G   D +TF  +LKA  C R  + L       +H+ I+K  +
Sbjct: 65  RFFP-SHSLFYFFSMRSNGIPLDNFTFPFVLKA--CSRLQINLH------LHSLIVKYGL 115

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            +D  +  AL+  Y   G    A  VFD M E++ +  +++I+ F++ G+  +A ++F K
Sbjct: 116 DSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNNGYASEALDLFEK 175

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCG 298
              +D VV + +     IS  +    LE    V   + +      V LG+AL+DM+++CG
Sbjct: 176 MQLEDKVVPDEVTMLSVISAISHLGDLELGRWVRAFIGRLGLGVSVALGTALIDMFSRCG 235

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            ID++  VF+ M  +NV TWT++I+G G +G   +AL +F  M++  VQP+YVTF G L 
Sbjct: 236 SIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTEALAMFHSMRKSGVQPDYVTFSGVLV 295

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC H GLV +G +IFES+ + Y M P ++HY CMVD+LGRAG L +A  FV  MP KPNS
Sbjct: 296 ACSHGGLVKEGWDIFESIRKVYRMDPLLDHYGCMVDILGRAGLLNEAYDFVERMPMKPNS 355

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            +W  LL +C  H+++ +A     +I K++++ + G  V LSN   AAG+W     +R K
Sbjct: 356 IIWRTLLGACVNHNNLGLAEKVKAKISKISSS-QNGDLVLLSNVYGAAGRWVEKASIRSK 414

Query: 479 MKLRGVLKDTGCSWVGTE 496
           M+ + + K+ GCS +  +
Sbjct: 415 MREKRIGKEPGCSSINVD 432



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 77/312 (24%), Positives = 142/312 (45%), Gaps = 47/312 (15%)

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           L +H+ I K G+  +  +   L+ ++  CG+L+ A ++FDE+ +R   +++ +IA +L N
Sbjct: 104 LHLHSLIVKYGLDSDIFVQNALICVYGYCGSLEMAVKVFDEMSERDSVSWSTVIASFLNN 163

Query: 125 GQVEESLSLVRKL-VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           G   E+L L  K+ +     PD  T   ++ A +           LGR V A I +  + 
Sbjct: 164 GYASEALDLFEKMQLEDKVVPDEVTMLSVISAISHLGD-----LELGRWVRAFIGRLGLG 218

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
               L TAL+D + + G    + +VF+ M  +NV+  T++I+G    G   +A  +F   
Sbjct: 219 VSVALGTALIDMFSRCGSIDESIVVFEKMAVRNVLTWTALINGLGVHGRSTEALAMFHSM 278

Query: 241 RKT-VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           RK+ V+ D V ++ ++   S            H  L+K  +           D++    K
Sbjct: 279 RKSGVQPDYVTFSGVLVACS------------HGGLVKEGW-----------DIFESIRK 315

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +     + DH        +  M+D  G+ G  N+A +    ++   ++PN + +   L A
Sbjct: 316 VYRMDPLLDH--------YGCMVDILGRAGLLNEAYDF---VERMPMKPNSIIWRTLLGA 364

Query: 360 C---GHAGLVDK 368
           C    + GL +K
Sbjct: 365 CVNHNNLGLAEK 376



 Score = 45.4 bits (106), Expect = 0.070,   Method: Compositional matrix adjust.
 Identities = 28/117 (23%), Positives = 61/117 (52%), Gaps = 3/117 (2%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           + +T  S+ SA+ H  + +    G  + A I + G+  +  +   L+ +  +CG++  + 
Sbjct: 185 DEVTMLSVISAISHLGDLEL---GRWVRAFIGRLGLGVSVALGTALIDMFSRCGSIDESI 241

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
            +F+++  R +  +  +I G   +G+  E+L++   +  SG +PD  TFS +L A +
Sbjct: 242 VVFEKMAVRNVLTWTALINGLGVHGRSTEALAMFHSMRKSGVQPDYVTFSGVLVACS 298


>gi|115488220|ref|NP_001066597.1| Os12g0289800 [Oryza sativa Japonica Group]
 gi|77554360|gb|ABA97156.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113649104|dbj|BAF29616.1| Os12g0289800 [Oryza sativa Japonica Group]
          Length = 756

 Score =  252 bits (643), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 147/456 (32%), Positives = 239/456 (52%), Gaps = 55/456 (12%)

Query: 78  PNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL 137
           PN    + L+  + + G +  A ++FD +P+R + A+N +++GY++  QVE + +L  ++
Sbjct: 227 PNVISWVNLVNGYCQAGRMGEARELFDRMPERNVVAWNVLLSGYVQFSQVEAAYNLFIEM 286

Query: 138 -----VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR---MVHA-----------QIL 178
                +S      G+  S  L+ +    S +P   N+G    ++H            Q+ 
Sbjct: 287 PEKNSISWTTMVSGFVRSGKLQEAKDVLSKMP-SDNVGAKTALMHGYLKSNLIDDARQLF 345

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
              V  D V +  ++  YV+ G    A ++F  M  K++I   +MI+G    G +  A  
Sbjct: 346 DGIVVRDAVCWNTMISGYVQCGMLDEAMVLFQQMPNKDMISWNTMIAGCAQGGQIRKAAS 405

Query: 239 IFRKTVEKDIVVYNAMIEGY----------------------------------SISIET 264
           IFRK   ++ V +N++I G+                                  S ++ T
Sbjct: 406 IFRKMKRRNTVSWNSIISGFVQNGLFVEALQHFMLMRRDAKSADWCTYACCLSASANLAT 465

Query: 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
            +   + H  L++  F  D   G+AL+  YAKCG++ +AR+VFD M  +++ +W ++IDG
Sbjct: 466 LQIGRQFHSLLVRTGFISDSSPGNALISAYAKCGRMLEARQVFDEMVVQDIVSWNALIDG 525

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP 384
           Y  NGN ++ + +F  M+   V+P+ +T +  LSAC HAGL+D+G   F SM + YS+KP
Sbjct: 526 YASNGNGSEVIAVFREMEANSVRPDEITLVVVLSACSHAGLIDEGLHFFNSMIKLYSLKP 585

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
             EHY CMVDLLGRAG L +A + V  M  +PN+ VW ALL +CR+H + E+A +AA ++
Sbjct: 586 VAEHYTCMVDLLGRAGRLREAFELVQGMQIQPNAGVWGALLGACRVHKNHEIAWLAAEKL 645

Query: 445 FKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           F+L    +   YV LSN    AGKWD   ++R  MK
Sbjct: 646 FELEPC-KASNYVLLSNICVEAGKWDDADKVRVLMK 680



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 84/361 (23%), Positives = 165/361 (45%), Gaps = 53/361 (14%)

Query: 90  HLKCGALKYAGQMFDELP-QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYT 148
           +++ G L  A ++ D +P ++  + YN MI+GY KNG+ E++++L++++ +    PD  +
Sbjct: 114 YVRAGELTLARELLDRMPGEKCAACYNTMISGYAKNGRFEDAIALLQEMPA----PDIVS 169

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIV 208
           ++ +L           L RN       Q        D V +  +++ YV+ G    A   
Sbjct: 170 WNSVLGG---------LIRNEEISRSVQFFDEMPDKDLVSWNLMLEGYVRAGDLDVASAF 220

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEG----------Y 258
           F  +   NVI   ++++G+   G + +A E+F +  E+++V +N ++ G          Y
Sbjct: 221 FSRIPSPNVISWVNLVNGYCQAGRMGEARELFDRMPERNVVAWNVLLSGYVQFSQVEAAY 280

Query: 259 SISIETARK----------------ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
           ++ IE   K                 L+    ++  +  ++V   +AL+  Y K   IDD
Sbjct: 281 NLFIEMPEKNSISWTTMVSGFVRSGKLQEAKDVLSKMPSDNVGAKTALMHGYLKSNLIDD 340

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN--YVTFLGALSAC 360
           AR++FD +  ++   W +MI GY + G  ++A+ LF  M      PN   +++   ++ C
Sbjct: 341 ARQLFDGIVVRDAVCWNTMISGYVQCGMLDEAMVLFQQM------PNKDMISWNTMIAGC 394

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
              G + K   IF  M+R  ++      +  ++    + G   +AL+  + M     S  
Sbjct: 395 AQGGQIRKAASIFRKMKRRNTVS-----WNSIISGFVQNGLFVEALQHFMLMRRDAKSAD 449

Query: 421 W 421
           W
Sbjct: 450 W 450



 Score =  102 bits (255), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 83/324 (25%), Positives = 154/324 (47%), Gaps = 30/324 (9%)

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           + G L  A ++F+E+P+R + +YN M++    +G++ E+    R+L     R +  +++ 
Sbjct: 23  RSGQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEA----RRLFDEMPRRNPVSWNT 78

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA-DDVLYTALVDSYVKGGKTSYARIVFD 210
           ++ A +            GR+  A+ L   + A ++  +T +V  YV+ G+ + AR + D
Sbjct: 79  MMVACS----------QHGRVEDARGLFDAMPARNEYSWTIMVSCYVRAGELTLARELLD 128

Query: 211 MML-EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL 269
            M  EK   C  +MISG+   G  EDA  + ++    DIV +N+++ G   + E +R   
Sbjct: 129 RMPGEKCAACYNTMISGYAKNGRFEDAIALLQEMPAPDIVSWNSVLGGLIRNEEISRSV- 187

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
               Q    +  +D+   + +++ Y + G +D A   F  +   NV +W ++++GY + G
Sbjct: 188 ----QFFDEMPDKDLVSWNLMLEGYVRAGDLDVASAFFSRIPSPNVISWVNLVNGYCQAG 243

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
              +A ELF  M E     N V +   LS       V+    +F  M    S+      +
Sbjct: 244 RMGEARELFDRMPE----RNVVAWNVLLSGYVQFSQVEAAYNLFIEMPEKNSIS-----W 294

Query: 390 ACMVDLLGRAGSLEQALKFVLEMP 413
             MV    R+G L++A   + +MP
Sbjct: 295 TTMVSGFVRSGKLQEAKDVLSKMP 318



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/312 (25%), Positives = 135/312 (43%), Gaps = 56/312 (17%)

Query: 153 LKASTCCRSN---VPLPRNLGRMVHAQILKCDVKADDVL-YTALVDSYVKGGKTSYARIV 208
           L AS   RSN     L R+ G++  A+ L  ++   +V+ Y A+V +    G+ + AR +
Sbjct: 6   LTASAVFRSNQELTSLARS-GQLAAARRLFEEMPRRNVVSYNAMVSALAHHGRLAEARRL 64

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIF---------------------------- 240
           FD M  +N +   +M+      G VEDA  +F                            
Sbjct: 65  FDEMPRRNPVSWNTMMVACSQHGRVEDARGLFDAMPARNEYSWTIMVSCYVRAGELTLAR 124

Query: 241 ----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
               R   EK    YN MI GY+   +  R   E    L++ +   D+   ++++    +
Sbjct: 125 ELLDRMPGEKCAACYNTMISGYA---KNGR--FEDAIALLQEMPAPDIVSWNSVLGGLIR 179

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
             +I  + + FD M  K++ +W  M++GY + G+ + A   F  +      PN ++++  
Sbjct: 180 NEEISRSVQFFDEMPDKDLVSWNLMLEGYVRAGDLDVASAFFSRIP----SPNVISWVNL 235

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG--RAGSLEQALKFVLEMPE 414
           ++    AG + + RE+F+ M       P+    A  V L G  +   +E A    +EMPE
Sbjct: 236 VNGYCQAGRMGEARELFDRM-------PERNVVAWNVLLSGYVQFSQVEAAYNLFIEMPE 288

Query: 415 KPNSDVWAALLS 426
           K NS  W  ++S
Sbjct: 289 K-NSISWTTMVS 299



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 54/94 (57%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G + H+ + +TG   +++    L+  + KCG +  A Q+FDE+  + + ++N +I GY  
Sbjct: 469 GRQFHSLLVRTGFISDSSPGNALISAYAKCGRMLEARQVFDEMVVQDIVSWNALIDGYAS 528

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           NG   E +++ R++ ++  RPD  T  ++L A +
Sbjct: 529 NGNGSEVIAVFREMEANSVRPDEITLVVVLSACS 562


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  252 bits (643), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 155/484 (32%), Positives = 254/484 (52%), Gaps = 54/484 (11%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H +  ++G+  +  +   ++ ++ KCG ++ A ++F+ +  + + ++N M+ GY +
Sbjct: 269 GKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQ 328

Query: 124 NGQVEESLSLVRKL--------------VSSGERPDGYTFSM--ILKASTCCRS--NVPL 165
            G+ +++L L  K+              V +G    G  F    + +    C S  NV  
Sbjct: 329 IGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVT 388

Query: 166 PRNL-------GRMVHAQILKC------------DVKADDVLYTALVDSYVKGGKTSYAR 206
             +L       G ++H +   C            D   D ++  AL+D Y K      AR
Sbjct: 389 LVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAAR 448

Query: 207 IVFDMMLEKN--VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS--- 261
            +FD++  K+  V+  T +I G    G   +A E+F + ++ D  V   M   ++IS   
Sbjct: 449 AMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFV---MPNAFTISCAL 505

Query: 262 -----IETARKALEVHCQLIKNVFFEDVKL--GSALVDMYAKCGKIDDARRVFDHMQQKN 314
                +   R   ++H  +++N F E   L   + L+DMY+K G +D AR VFD+M Q+N
Sbjct: 506 MACARLGALRFGRQIHAYVLRNRF-ESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRN 564

Query: 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374
             +WTS++ GYG +G   +AL++F  MQ+  + P+ VTF+  L AC H+G+VD+G   F 
Sbjct: 565 GVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFN 624

Query: 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDV 434
            M +D+ + P  EHYACMVDLL RAG L++A++ +  MP KP   VW ALLS+CR++ +V
Sbjct: 625 GMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANV 684

Query: 435 EMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVG 494
           E+   AAN++ +L + +  G+Y  LSN  A A  W  V  +R  MK  G+ K  GCSWV 
Sbjct: 685 ELGEYAANQLLELESGN-DGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQ 743

Query: 495 TESG 498
              G
Sbjct: 744 GRKG 747



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 116/427 (27%), Positives = 203/427 (47%), Gaps = 59/427 (13%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQR---TLSAYNYMIAG 120
           G  +HA +  +G + N  +   L+ ++ +CGA + A Q+FDE+ +R    L ++N ++A 
Sbjct: 164 GASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAA 223

Query: 121 YLKNGQVEESLSLVRKLVSS-GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           Y++ G    ++ +  ++    G RPD  +   +L A   C S     R  G+ VH   L+
Sbjct: 224 YMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPA---CASVGAWSR--GKQVHGYALR 278

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
             +  D  +  A+VD Y K G    A  VF+ M  K+V+   +M++G+   G  +DA  +
Sbjct: 279 SGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGL 338

Query: 240 FRKT----VEKDIVVYNAMIEGYSI------SIETARKAL-------------------- 269
           F K     +E ++V ++A+I GY+       +++  R+ L                    
Sbjct: 339 FEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCAS 398

Query: 270 --------EVHCQLIKNVF-------FEDVKLGSALVDMYAKCGKIDDARRVFDHM--QQ 312
                   E HC  IK +         +D+ + +AL+DMY+KC     AR +FD +  + 
Sbjct: 399 AGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKD 458

Query: 313 KNVFTWTSMIDGYGKNGNPNQALELFCMM--QECCVQPNYVTFLGALSACGHAGLVDKGR 370
           ++V TWT +I G  ++G  N+ALELF  M   +  V PN  T   AL AC   G +  GR
Sbjct: 459 RSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGR 518

Query: 371 EIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRL 430
           +I   + R+      +    C++D+  ++G ++ A + V +   + N   W +L++   +
Sbjct: 519 QIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAA-RVVFDNMHQRNGVSWTSLMTGYGM 577

Query: 431 HDDVEMA 437
           H   E A
Sbjct: 578 HGRGEEA 584



 Score =  128 bits (322), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 163/326 (50%), Gaps = 21/326 (6%)

Query: 110 TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL 169
           T+  +N +I   +  G +E+ L L R++   G RPD YTF  +LKA       +P  R  
Sbjct: 109 TVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKAC----GEIPSFR-C 163

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV---ICSTSMISG 226
           G  VHA +     + +  +   LV  Y + G    AR VFD M E+ V   +   S+++ 
Sbjct: 164 GASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAA 223

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAM----IEGYSISIETARKALEVHCQLIKNVFFE 282
           +M  G    A ++F +  E   +  +A+    +     S+    +  +VH   +++  FE
Sbjct: 224 YMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFE 283

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           DV +G+A+VDMYAKCG +++A +VF+ M+ K+V +W +M+ GY + G  + AL LF  ++
Sbjct: 284 DVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIR 343

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
           E  ++ N VT+   ++     GL  +  ++F  M    S +P +     ++     AG+L
Sbjct: 344 EEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMLLCGS-EPNVVTLVSLLSGCASAGTL 402

Query: 403 E-------QALKFVLEMPEK-PNSDV 420
                    A+K++L + E  P  D+
Sbjct: 403 LHGKETHCHAIKWILNLDENDPGDDL 428


>gi|356503240|ref|XP_003520419.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 801

 Score =  252 bits (643), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 145/436 (33%), Positives = 237/436 (54%), Gaps = 17/436 (3%)

Query: 64  GLKIHAHITKTGV--KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           G  +HA++ + G   K    +   L+ +++KC  L YA ++FD L + ++ ++  MIA Y
Sbjct: 244 GKAMHAYVMRNGKCGKSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMIAAY 303

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           +    + E + L  K++  G  P+  T   ++K    C +   L   LG+++HA  L+  
Sbjct: 304 IHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKE---CGTAGAL--ELGKLLHAFTLRNG 358

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
                VL TA +D Y K G    AR VFD    K+++  ++MIS +     +++A +IF 
Sbjct: 359 FTLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFV 418

Query: 242 KTVEKDI------VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
                 I      +V   MI   + S+E  +    +H  + K     D+ L ++ VDMYA
Sbjct: 419 HMTGCGIRPNERTMVSLLMICAKAGSLEMGK---WIHSYIDKQGIKGDMILKTSFVDMYA 475

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
            CG ID A R+F     +++  W +MI G+  +G+   ALELF  M+   V PN +TF+G
Sbjct: 476 NCGDIDTAHRLFAEATDRDISMWNAMISGFAMHGHGEAALELFEEMEALGVTPNDITFIG 535

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
           AL AC H+GL+ +G+ +F  M  ++   PK+EHY CMVDLLGRAG L++A + +  MP +
Sbjct: 536 ALHACSHSGLLQEGKRLFHKMVHEFGFTPKVEHYGCMVDLLGRAGLLDEAHELIKSMPMR 595

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
           PN  V+ + L++C+LH ++++   AA +   L  + + G  V +SN  A+A +W  V  +
Sbjct: 596 PNIAVFGSFLAACKLHKNIKLGEWAAKQFLSLEPH-KSGYNVLMSNIYASANRWGDVAYI 654

Query: 476 REKMKLRGVLKDTGCS 491
           R  MK  G++K+ G S
Sbjct: 655 RRAMKDEGIVKEPGVS 670



 Score =  148 bits (373), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 109/406 (26%), Positives = 200/406 (49%), Gaps = 20/406 (4%)

Query: 48  LPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP 107
           +PS L+      +   G ++H  + K G   +  +   L++++ + G+L  A  +FD++ 
Sbjct: 127 IPSVLKACCLIPSFLLGQEVHGFVVKNGFHGDVFVCNALIMMYSEVGSLALARLLFDKIE 186

Query: 108 QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR 167
            + + +++ MI  Y ++G ++E+L L+R +     +P     S I   S           
Sbjct: 187 NKDVVSWSTMIRSYDRSGLLDEALDLLRDMHVMRVKP-----SEIGMISITHVLAELADL 241

Query: 168 NLGRMVHAQIL---KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI 224
            LG+ +HA ++   KC  K+   L TAL+D YVK    +YAR VFD + + ++I  T+MI
Sbjct: 242 KLGKAMHAYVMRNGKCG-KSGVPLCTALIDMYVKCENLAYARRVFDGLSKASIISWTAMI 300

Query: 225 SGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVF 280
           + ++    + +   +F K + + +      +        TA  ALE    +H   ++N F
Sbjct: 301 AAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLSLVKECGTA-GALELGKLLHAFTLRNGF 359

Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
              + L +A +DMY KCG +  AR VFD  + K++  W++MI  Y +N   ++A ++F  
Sbjct: 360 TLSLVLATAFIDMYGKCGDVRSARSVFDSFKSKDLMMWSAMISSYAQNNCIDEAFDIFVH 419

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           M  C ++PN  T +  L  C  AG ++ G+ I   +++   +K  M      VD+    G
Sbjct: 420 MTGCGIRPNERTMVSLLMICAKAGSLEMGKWIHSYIDKQ-GIKGDMILKTSFVDMYANCG 478

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446
            ++ A +   E  ++  S +W A++S   +H   E    AA E+F+
Sbjct: 479 DIDTAHRLFAEATDRDIS-MWNAMISGFAMHGHGE----AALELFE 519



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 107/432 (24%), Positives = 191/432 (44%), Gaps = 50/432 (11%)

Query: 15  THNRHYTLVPP-------------NQTFPPKLQNYDSLSNPLTATSLPSALQH-YINSDT 60
           T N H +  PP             NQ   P L+   S   P    ++P   Q  +IN + 
Sbjct: 3   TCNSHLSSAPPSPLPISIHSFQNTNQYHSPTLKFTQSQPKP----NVPHIQQELHINLNE 58

Query: 61  PFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120
                ++H H  KT    ++N S ++ +  L             E      + ++++I  
Sbjct: 59  T---QQLHGHFIKT----SSNCSYRVPLAAL-------------ESYSSNAAIHSFLITS 98

Query: 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
           Y+KN    ++  +   +  +    D +    +LKA  CC     L   LG+ VH  ++K 
Sbjct: 99  YIKNNCPADAAKIYAYMRGTDTEVDNFVIPSVLKA--CCLIPSFL---LGQEVHGFVVKN 153

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
               D  +  AL+  Y + G  + AR++FD +  K+V+  ++MI  +   G +++A ++ 
Sbjct: 154 GFHGDVFVCNALIMMYSEVGSLALARLLFDKIENKDVVSWSTMIRSYDRSGLLDEALDLL 213

Query: 241 RKT-VEKDIVVYNAMIEGYSISIETARKAL--EVHCQLIKN--VFFEDVKLGSALVDMYA 295
           R   V +       MI    +  E A   L   +H  +++N       V L +AL+DMY 
Sbjct: 214 RDMHVMRVKPSEIGMISITHVLAELADLKLGKAMHAYVMRNGKCGKSGVPLCTALIDMYV 273

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KC  +  ARRVFD + + ++ +WT+MI  Y    N N+ + LF  M    + PN +T L 
Sbjct: 274 KCENLAYARRVFDGLSKASIISWTAMIAAYIHCNNLNEGVRLFVKMLGEGMFPNEITMLS 333

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            +  CG AG ++ G+ +     R+      +      +D+ G+ G +  A + V +  + 
Sbjct: 334 LVKECGTAGALELGKLLHAFTLRN-GFTLSLVLATAFIDMYGKCGDVRSA-RSVFDSFKS 391

Query: 416 PNSDVWAALLSS 427
            +  +W+A++SS
Sbjct: 392 KDLMMWSAMISS 403


>gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980
           [Vitis vinifera]
 gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera]
          Length = 595

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 140/403 (34%), Positives = 227/403 (56%), Gaps = 11/403 (2%)

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
           ++++A  +FD++PQ  +  +N M  GY +      + +L  +++ SG  PD YTF  +LK
Sbjct: 70  SMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYTFPSLLK 129

Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE 214
           A   C++        GR +H   +K  +  +  +   L++ Y    +   AR VFD + E
Sbjct: 130 ACASCKA-----LEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKIWE 184

Query: 215 KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV--- 271
             V+   +MI+G+       +A  +FR+   +++   +  +    +S      AL++   
Sbjct: 185 PCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSV-LSSCALLGALDLGKW 243

Query: 272 -HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
            H  + KN F   VK+ +AL+DMYAKCG +DDA  VF++M  ++   W++MI  Y  +G+
Sbjct: 244 MHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIHGH 303

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
             +A+ LF  M++   +P+ +TFLG L AC H GLV++G E F  M   Y + P ++HY 
Sbjct: 304 GLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKHYG 363

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
           CMVDLLGRAG LE+A +F++ +P +P   +W  LLS+C  H +VE+      +IF+L+ +
Sbjct: 364 CMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELD-D 422

Query: 451 DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
              G Y+ LSN  A AG+W+ V  +R+ M  RGV+K  GCS V
Sbjct: 423 SHGGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSV 465



 Score = 79.3 bits (194), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 149/362 (41%), Gaps = 47/362 (12%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           + PS L+   +      G ++H    K G+  N  +   L+ ++  C  +  A ++FD++
Sbjct: 123 TFPSLLKACASCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDKI 182

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
            +  +  YN MI GY +  +  E+LSL R+L +   +P   T   +L  S+C        
Sbjct: 183 WEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVL--SSCALLGA--- 237

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
            +LG+ +H  + K        + TAL+D Y K G    A  VF+ M  ++    ++MI  
Sbjct: 238 LDLGKWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMA 297

Query: 227 FMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
           +   G    A  +F++      E D + +  ++  Y+ S          H  L++  F  
Sbjct: 298 YAIHGHGLKAVSLFKEMRKAGTEPDEITFLGLL--YACS----------HTGLVEEGF-- 343

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
                     M  K G I   +             +  M+D  G+ G   +A E    + 
Sbjct: 344 -----EYFYGMRDKYGVIPGIKH------------YGCMVDLLGRAGRLEEAYEFIVGLP 386

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVDLLGRAGS 401
              ++P  + +   LSACG  G V+ G+ + E + E D S       Y  + +L  RAG 
Sbjct: 387 ---IRPTPILWRTLLSACGSHGNVELGKRVIEQIFELDDSHGGD---YIILSNLCARAGR 440

Query: 402 LE 403
            E
Sbjct: 441 WE 442


>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 597

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 144/437 (32%), Positives = 243/437 (55%), Gaps = 16/437 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G++IH  I K     N  +   L+ LH KCG ++ A  +F+ + +R + ++N +I GY  
Sbjct: 157 GMQIHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSERDVVSWNAVIGGYAA 216

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRM--VHAQILKCD 181
               ++S  +   ++  G  PD +T   +LKAS+  R+N     NL ++  +H  I++  
Sbjct: 217 QDFNDDSFRMFYSMMGEGVTPDCFTLGSVLKASS--RAN-----NLIKVCQIHGIIIQLG 269

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ-GFVEDAEEIF 240
             +   L  +L+D+Y K      A  ++  ML+K+VI  T++++G+  +  +  +A ++F
Sbjct: 270 FGSHIDLNGSLIDAYAKSEGMKSASALYKSMLKKDVISFTAIMTGYARKCSYSREALDLF 329

Query: 241 RKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
           +      +E D V +  M+      I +     ++H   IK     DV  G+ALVDMYAK
Sbjct: 330 KDMQHIFMEIDDVTFCTMLN-VCADIASLSIGRQIHALAIKYKPSYDVATGNALVDMYAK 388

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
            G+I+DA R F  M++KNV +WTS+I GYGK+G  ++A+ L+  M+   ++PN +TFL  
Sbjct: 389 SGEIEDATRAFYEMKEKNVISWTSLITGYGKHGYGHEAIALYKKMEYEGLKPNDITFLSL 448

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           L AC H+GL  +G E F +M   Y++ P+ EHY+CM+DL  R G LE+A   + +M  KP
Sbjct: 449 LFACSHSGLTGEGWECFNNMITKYNILPRAEHYSCMIDLFARGGQLEEAYNMICKMNIKP 508

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
           NS +W A+L +C ++  + +  +AA  + +++  +    YV L+   AA+G WD    +R
Sbjct: 509 NSSLWGAILGACSIYGHMSLGEVAATHLLRMDPENSAN-YVVLAGIYAASGSWDKACRMR 567

Query: 477 EKMKLRGVLKDTGCSWV 493
             M+ R + K  G S +
Sbjct: 568 NLMEYRSLKKIPGYSII 584



 Score =  155 bits (393), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 108/394 (27%), Positives = 202/394 (51%), Gaps = 13/394 (3%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L+++     LQ  I ++    G  IH+HI + G   N ++S KL+I ++K G    A ++
Sbjct: 35  LSSSLYMKILQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETINARKV 94

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           FD +P+R + ++   I+GY KNG  +++L +  ++  +G R + +T+  +L+A T  R  
Sbjct: 95  FDRMPERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLRACTGLRC- 153

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
             L R  G  +H  I K     +  + +ALVD + K G    AR +F+ M E++V+   +
Sbjct: 154 --LER--GMQIHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFETMSERDVVSWNA 209

Query: 223 MISGFMSQGFVEDAEEIFR----KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKN 278
           +I G+ +Q F +D+  +F     + V  D     ++++  S +     K  ++H  +I+ 
Sbjct: 210 VIGGYAAQDFNDDSFRMFYSMMGEGVTPDCFTLGSVLKASSRA-NNLIKVCQIHGIIIQL 268

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN-PNQALEL 337
            F   + L  +L+D YAK   +  A  ++  M +K+V ++T+++ GY +  +   +AL+L
Sbjct: 269 GFGSHIDLNGSLIDAYAKSEGMKSASALYKSMLKKDVISFTAIMTGYARKCSYSREALDL 328

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
           F  MQ   ++ + VTF   L+ C     +  GR+I  ++   Y     +     +VD+  
Sbjct: 329 FKDMQHIFMEIDDVTFCTMLNVCADIASLSIGRQI-HALAIKYKPSYDVATGNALVDMYA 387

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           ++G +E A +   EM EK N   W +L++    H
Sbjct: 388 KSGEIEDATRAFYEMKEK-NVISWTSLITGYGKH 420



 Score = 89.4 bits (220), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 50/173 (28%), Positives = 90/173 (52%), Gaps = 2/173 (1%)

Query: 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWT 319
           I  E  ++   +H  +I+N F  ++ L + L+  Y K G+  +AR+VFD M ++NV +WT
Sbjct: 48  IETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETINARKVFDRMPERNVVSWT 107

Query: 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD 379
           + I GY KNG+   AL +F  M    V+ N  T+   L AC     +++G +I   ++++
Sbjct: 108 AQISGYAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLRACTGLRCLERGMQIHGCIQKN 167

Query: 380 YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHD 432
             +       A +VDL  + G++E A +++ E   + +   W A++      D
Sbjct: 168 RFIGNLFVQSA-LVDLHSKCGNMEDA-RYLFETMSERDVVSWNAVIGGYAAQD 218


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 142/434 (32%), Positives = 244/434 (56%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH+   K G + +  +S  L+ ++ K G L  A ++ + L +R + ++  MIAGY++
Sbjct: 365 GEQIHSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQ 424

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +   EE+L+  +++   G  PD     +   AS C  + +   R  G  +HA++      
Sbjct: 425 HDFCEEALATFKEMQDCGVWPD--NIGLASAASAC--AGIKAMRQ-GLQIHARVYVSGYA 479

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           AD  ++  LV+ Y + G++  A  +F  +  K+ I    +ISGF      + A  +F K 
Sbjct: 480 ADISIWNTLVNLYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKM 539

Query: 244 VEKDIVVYNAMIEGYSIS----IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            +     YN      +IS    +   ++  +VH + +K     + ++ +AL+ +Y KCG 
Sbjct: 540 GQAG-AKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGS 598

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I+DA+ +F  M  +N  +W ++I    ++G   +AL+LF  M++  ++PN VTF+G L+A
Sbjct: 599 IEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAA 658

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H GLV++G   F+SM   Y + P  +HYAC+VD+LGRAG L++A +FV EMP   N+ 
Sbjct: 659 CSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAM 718

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +W  LLS+C++H ++E+  +AA  + +L  +D   +YV LSN  A  GKW +  ++R+ M
Sbjct: 719 IWRTLLSACKVHKNIEIGELAAKHLLELEPHD-SASYVLLSNAYAVTGKWANRDQVRKMM 777

Query: 480 KLRGVLKDTGCSWV 493
           K RG+ K+ G SW+
Sbjct: 778 KDRGIRKEPGRSWI 791



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 196/372 (52%), Gaps = 12/372 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H+++ K G+  +      LL L++KCG ++ A  +F+   +  +  +N M+  Y +
Sbjct: 264 GKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQ 323

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
              + +S  +  ++ ++G  P+ +T+  IL+  TC          LG  +H+  +K   +
Sbjct: 324 ISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQ-----IELGEQIHSLSIKNGFE 378

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +D  +   L+D Y K G    AR + +M+ +++V+  TSMI+G++   F E+A   F++ 
Sbjct: 379 SDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEM 438

Query: 244 VEKDIVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
            +  +   N   A        I+  R+ L++H ++  + +  D+ + + LV++YA+CG+ 
Sbjct: 439 QDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRS 498

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           ++A  +F  ++ K+  TW  +I G+G++    QAL +F  M +   + N  TF+ A+SA 
Sbjct: 499 EEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISAISAL 558

Query: 361 GHAGLVDKGREIF-ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
            +   + +G+++   +++  ++ + ++ +   ++ L G+ GS+E A     EM  + N  
Sbjct: 559 ANLADIKQGKQVHGRAVKTGHTSETEVAN--ALISLYGKCGSIEDAKMIFSEMSLR-NEV 615

Query: 420 VWAALLSSCRLH 431
            W  +++SC  H
Sbjct: 616 SWNTIITSCSQH 627



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 104/377 (27%), Positives = 180/377 (47%), Gaps = 12/377 (3%)

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           L+IHA     G+  +  I   L+ L+ K G +  A Q+F EL  R   ++  M++GY ++
Sbjct: 63  LEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQS 122

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
           G  +E+  L  ++  +   P  Y  S +L  S C +  +      GRM+HAQ+ K    +
Sbjct: 123 GLGKEAFRLYSQMHWTAVIPTPYVLSSVL--SACTKGKLFAQ---GRMIHAQVYKQAFCS 177

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT- 243
           +  +  AL+  Y+  G    A  VF  ML  + +   ++ISG    G  E A +IF +  
Sbjct: 178 ETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQ 237

Query: 244 ---VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
              +  D V   +++   + S+   +K  ++H  L+K     D     +L+D+Y KCG I
Sbjct: 238 LSGLRPDCVTVASLLAACA-SVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDI 296

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           + A  +F+   + NV  W  M+  YG+  +  ++ E+F  MQ   + PN  T+   L  C
Sbjct: 297 ETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTC 356

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
              G ++ G +I  S+      +  M     ++D+  + G L++A K +LEM EK +   
Sbjct: 357 TCTGQIELGEQI-HSLSIKNGFESDMYVSGVLIDMYSKYGCLDKARK-ILEMLEKRDVVS 414

Query: 421 WAALLSSCRLHDDVEMA 437
           W ++++    HD  E A
Sbjct: 415 WTSMIAGYVQHDFCEEA 431



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/369 (27%), Positives = 178/369 (48%), Gaps = 16/369 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IHA + K      T +   L+ L+L  G+ K A ++F ++       +N +I+G+ +
Sbjct: 163 GRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQ 222

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G  E +L +  ++  SG RPD  T + +L A   C S   L +  G+ +H+ +LK  + 
Sbjct: 223 CGHGECALQIFDEMQLSGLRPDCVTVASLLAA---CASVGDLQK--GKQLHSYLLKAGMS 277

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D +   +L+D YVK G    A  +F++    NV+    M+  +     +  + EIF + 
Sbjct: 278 FDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQM 337

Query: 244 ----VEKDIVVYNAMIEGYSIS--IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
               +  +   Y  ++   + +  IE      ++H   IKN F  D+ +   L+DMY+K 
Sbjct: 338 QATGIHPNQFTYPCILRTCTCTGQIELGE---QIHSLSIKNGFESDMYVSGVLIDMYSKY 394

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G +D AR++ + +++++V +WTSMI GY ++    +AL  F  MQ+C V P+ +    A 
Sbjct: 395 GCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAA 454

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           SAC     + +G +I   +         +  +  +V+L  R G  E+A     E+  K +
Sbjct: 455 SACAGIKAMRQGLQIHARVYVS-GYAADISIWNTLVNLYARCGRSEEAFSLFREIEHK-D 512

Query: 418 SDVWAALLS 426
              W  L+S
Sbjct: 513 EITWNGLIS 521


>gi|125563252|gb|EAZ08632.1| hypothetical protein OsI_30906 [Oryza sativa Indica Group]
          Length = 755

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 143/443 (32%), Positives = 242/443 (54%), Gaps = 50/443 (11%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           L+  +++ G +  A ++FD +P R + ++N M++GY + G + E+    R+L  +    D
Sbjct: 199 LMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEA----RRLFDAAPVRD 254

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQ-ILKCDVKADDVLYTALVDSYVKGGKTSY 204
            +T++ ++                G +  A+ +     + + V + A+V +Y++      
Sbjct: 255 VFTWTAVVSGYA----------QNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDE 304

Query: 205 ARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS----- 259
           A+ +F+MM  +NV    +M++G+   G +E+A+ +F    +KD V + AM+  YS     
Sbjct: 305 AKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCS 364

Query: 260 -----ISIETAR--------------------KALE----VHCQLIKNVFFEDVKLGSAL 290
                + IE  R                     ALE    +H +LI+  +     +G+AL
Sbjct: 365 EETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNAL 424

Query: 291 VDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY 350
           + MY KCG ++DAR  F+ M++++V +W +MI GY ++G   +ALE+F MM+    +P+ 
Sbjct: 425 LAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDD 484

Query: 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410
           +T +G L+AC H+GLV+KG   F SM  D+ +  K EHY CM+DLLGRAG L +A   + 
Sbjct: 485 ITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMK 544

Query: 411 EMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
           +MP +P+S +W ALL + R+H + E+   AA +IF+L   +  G YV LSN  A++GKW 
Sbjct: 545 DMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPEN-AGMYVLLSNIYASSGKWR 603

Query: 471 SVTELREKMKLRGVLKDTGCSWV 493
              ++R  M+ RGV K  G SW+
Sbjct: 604 DARKMRVMMEERGVKKVPGFSWI 626



 Score =  145 bits (366), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 180/354 (50%), Gaps = 32/354 (9%)

Query: 76  VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVR 135
           ++P    S K +  H++ G +  A ++F  +P+R+ S YN M+AGY  NG++  + SL R
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 136 KLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDS 195
            +     RPD Y+++ +L A     S++   R L   +  +        D V Y  ++ S
Sbjct: 94  AI----PRPDNYSYNTLLHA-LAVSSSLADARGLFDEMPVR--------DSVTYNVMISS 140

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMI 255
           +   G  S AR  FD+  EK+ +    M++ ++  G VE+A  +F    E D + +NA++
Sbjct: 141 HANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDAISWNALM 200

Query: 256 EGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
            GY +      +A E    L   +   DV   + +V  YA+ G + +ARR+FD    ++V
Sbjct: 201 SGY-VQWGKMSEARE----LFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV 255

Query: 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES 375
           FTWT+++ GY +NG   +A  +F  M E     N V++   ++A     ++D+ +E+F  
Sbjct: 256 FTWTAVVSGYAQNGMLEEARRVFDAMPE----RNAVSWNAMVAAYIQRRMMDEAKELF-- 309

Query: 376 MERDYSMKP--KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
                +M P   +  +  M+    +AG LE+A      MP+K ++  WAA+L++
Sbjct: 310 -----NMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQK-DAVSWAAMLAA 357



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 111/260 (42%), Gaps = 41/260 (15%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+++H  + + G      +   LL ++ KCG ++ A   F+E+ +R + ++N MIAGY +
Sbjct: 402 GMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYAR 461

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G  +E+L +   + ++  +PD  T   +L A  C  S + + + +    ++      V 
Sbjct: 462 HGFGKEALEIFDMMRTTSTKPDDITLVGVLAA--CSHSGL-VEKGIS-YFYSMHHDFGVT 517

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           A    YT ++D   + G+ + A    D+M +      ++M    +    +    E+ R  
Sbjct: 518 AKPEHYTCMIDLLGRAGRLAEAH---DLMKDMPFEPDSTMWGALLGASRIHRNPELGRSA 574

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
            EK                             I  +  E+  +   L ++YA  GK  DA
Sbjct: 575 AEK-----------------------------IFELEPENAGMYVLLSNIYASSGKWRDA 605

Query: 304 RRVFDHMQQKNV-----FTW 318
           R++   M+++ V     F+W
Sbjct: 606 RKMRVMMEERGVKKVPGFSW 625


>gi|449433569|ref|XP_004134570.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Cucumis sativus]
          Length = 705

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 134/401 (33%), Positives = 228/401 (56%), Gaps = 26/401 (6%)

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
           ++F+ +P++ L ++N +IAG  +NG  EE+L ++R++  +  +PD +T S +L       
Sbjct: 194 KIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLPLIA--- 250

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
            NV + R  G+ +H   ++  + AD  + ++L+D Y K  + + +  VF ++ E++ I  
Sbjct: 251 ENVDISR--GKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISW 308

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS--------IETARKALEVH 272
            S+I+G +  G  ++    FR+ +   I       + YS S        + T     ++H
Sbjct: 309 NSIIAGCVQNGLFDEGLRFFRQMLMAKI-----KPKSYSFSSIMPACAHLTTLHLGKQLH 363

Query: 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPN 332
             + +N F E++ + S+LVDMYAKCG I  A+++FD M+ +++ +WT+MI G   +G   
Sbjct: 364 GYITRNGFDENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAP 423

Query: 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACM 392
            A+ELF  M+   ++         L+AC H GLVD+  + F SM RD+ + P +EHYA +
Sbjct: 424 DAIELFEQMETEGIK-------AVLTACSHGGLVDEAWKYFNSMTRDFGIAPGVEHYAAV 476

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR 452
            DLLGRAG LE+A  F+  M   P   +WA LLS+CR+H +++MA   AN I +++ N+ 
Sbjct: 477 SDLLGRAGRLEEAYDFICGMHIGPTGSIWATLLSACRVHKNIDMAEKVANRILEVDPNN- 535

Query: 453 PGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            GAY+ L+N  +AA +W    + R  M+  G+ K   CSW+
Sbjct: 536 TGAYILLANIYSAARRWKEAAKWRASMRRIGIRKTPACSWI 576



 Score =  100 bits (248), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/355 (22%), Positives = 159/355 (44%), Gaps = 44/355 (12%)

Query: 113 AYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRM 172
           A+  +I  Y  +G   +SL     +++SG  PD   F  +LK+       + +  NLG  
Sbjct: 73  AWKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCA-----LLMDLNLGES 127

Query: 173 VHAQILKCDVKADDVLYTALVDSYVK------GGKTSYA--------------------- 205
           +H  I++  +  D     AL++ Y K       G+                         
Sbjct: 128 LHGYIIRVGLDFDLYTGNALMNMYSKLRFLEESGRQRLGAGEVFDEMTERTRSVRTVSVL 187

Query: 206 -----RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK----TVEKDIVVYNAMIE 256
                R +F+MM EK+++   ++I+G    G  E+   + R+     ++ D    ++++ 
Sbjct: 188 SEDSVRKIFEMMPEKDLVSWNTIIAGNARNGLYEETLRMIREMGGANLKPDSFTLSSVLP 247

Query: 257 GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF 316
             + +++ +R   E+H   I+     D+ + S+L+DMYAKC ++ D+ RVF  + +++  
Sbjct: 248 LIAENVDISRGK-EIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGI 306

Query: 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM 376
           +W S+I G  +NG  ++ L  F  M    ++P   +F   + AC H   +  G+++   +
Sbjct: 307 SWNSIIAGCVQNGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPACAHLTTLHLGKQLHGYI 366

Query: 377 ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
            R+      +   + +VD+  + G++  A K + +     +   W A++  C LH
Sbjct: 367 TRN-GFDENIFIASSLVDMYAKCGNIRTA-KQIFDRMRLRDMVSWTAMIMGCALH 419



 Score = 83.2 bits (204), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 71/302 (23%), Positives = 131/302 (43%), Gaps = 52/302 (17%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH    + G+  +  ++  L+ ++ KC  +  + ++F  L +R   ++N +IAG ++
Sbjct: 258 GKEIHGCSIRQGLDADIYVASSLIDMYAKCTRVADSCRVFTLLTERDGISWNSIIAGCVQ 317

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  +E L   R+++ +  +P  Y+FS I+ A   C     L  +LG+ +H  I +    
Sbjct: 318 NGLFDEGLRFFRQMLMAKIKPKSYSFSSIMPA---CAHLTTL--HLGKQLHGYITRNGFD 372

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            +  + ++LVD Y K G    A+ +FD M  ++++  T+MI G    G   DA E+F + 
Sbjct: 373 ENIFIASSLVDMYAKCGNIRTAKQIFDRMRLRDMVSWTAMIMGCALHGQAPDAIELFEQM 432

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
             + I                  KA+   C                     +  G +D+A
Sbjct: 433 ETEGI------------------KAVLTAC---------------------SHGGLVDEA 453

Query: 304 RRVFDHMQQK-----NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            + F+ M +       V  + ++ D  G+ G   +A +  C M    + P    +   LS
Sbjct: 454 WKYFNSMTRDFGIAPGVEHYAAVSDLLGRAGRLEEAYDFICGMH---IGPTGSIWATLLS 510

Query: 359 AC 360
           AC
Sbjct: 511 AC 512



 Score = 39.7 bits (91), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 27/104 (25%), Positives = 53/104 (50%), Gaps = 5/104 (4%)

Query: 260 ISIETARKALEVHCQLIKNVFFE--DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT 317
           +SI++  +A ++H Q++K   F+   +   S L+ +Y+    + D+ R+F+ +       
Sbjct: 17  LSIKSRSQAQQLHAQVLK---FQASSLCNLSLLLSIYSHINLLHDSLRLFNTIHFPPALA 73

Query: 318 WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
           W S+I  Y  +G P+Q+L  F  M    + P++  F   L +C 
Sbjct: 74  WKSVIRCYTSHGLPHQSLGSFIGMLASGLYPDHNVFPSVLKSCA 117


>gi|357146098|ref|XP_003573875.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Brachypodium distachyon]
          Length = 652

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 147/437 (33%), Positives = 235/437 (53%), Gaps = 43/437 (9%)

Query: 93  CGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE-RPDGYTFSM 151
           C ++  A ++FD    R L ++N +I GY++ G   E+L +  ++V  G   PD  T   
Sbjct: 168 CSSMAEARKLFDGSHVRDLVSWNTLIGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIG 227

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           ++  S   R ++ L R L   V +  ++C V+    L   ++D Y+K G    A+ VF+ 
Sbjct: 228 VVSGSAQLR-DLELGRRLHGYVESHGVRCTVR----LMNVVMDMYIKCGDLERAKSVFEG 282

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE- 270
           + +K ++  T+MI G+   G ++DA ++F +  E+D+  +NA++ GY +  +  ++AL  
Sbjct: 283 IDKKTIVSWTTMIVGYAQFGLMDDARKVFDEMPERDVFPWNALMTGY-VQCKRGKEALRL 341

Query: 271 ----------------------------------VHCQLIKNVFFEDVKLGSALVDMYAK 296
                                             VH  + +      V LG+ LVDMY+K
Sbjct: 342 FHDMQEAMVEPDDITMVNLLSACSQLGALEMGMWVHHYIDRRRVSLSVMLGTNLVDMYSK 401

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG I+ A RVF  + +KN  TWT+MI G   +G+ + A++ F  M E  +QP+ +TF+G 
Sbjct: 402 CGNIEKAIRVFKEIPEKNALTWTAMISGLANHGHADVAIKYFQRMIELGLQPDEITFIGV 461

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           LSAC HAGLV +G+E F  M   Y ++ KM+HY+CMVDLLGRAG L++A   V  MP +P
Sbjct: 462 LSACCHAGLVKEGQEFFSLMVSKYHLERKMKHYSCMVDLLGRAGYLDEAEHLVNTMPMEP 521

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
           ++ VW AL  +CR+H ++ +   AA ++ +L+  D  G YV L+N  A A       ++R
Sbjct: 522 DAVVWGALFFACRMHGNITLGEKAAMKLVELDPGDS-GIYVLLANMYAEANMRKKADKVR 580

Query: 477 EKMKLRGVLKDTGCSWV 493
             M+  GV K  GCS +
Sbjct: 581 VMMRHLGVEKVPGCSCI 597



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 98/370 (26%), Positives = 162/370 (43%), Gaps = 48/370 (12%)

Query: 107 PQRTLSAYNYMIAGY---LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           P  + S YN  +         G V   L L   L+ S  RPD  TF  +LKA  C R   
Sbjct: 79  PPDSASPYNAALRALSLCTDRGLVTRCLPLYCSLLRSA-RPDHLTFPFLLKA--CARLQ- 134

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
              RN G  V   +L     AD  +  A +         + AR +FD    ++++   ++
Sbjct: 135 --ERNYGNAVLGNVLSLGFHADVFVVNAAMHFLAVCSSMAEARKLFDGSHVRDLVSWNTL 192

Query: 224 ISGFMSQGFVEDAEEIFRK-----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKN 278
           I G++ +G   +A E+F +      V  D V    ++ G S  +        +H  +  +
Sbjct: 193 IGGYVRRGVPREALEMFWRMVGDGAVTPDEVTMIGVVSG-SAQLRDLELGRRLHGYVESH 251

Query: 279 VFFEDVKLGSALVDMYAKCGKI-------------------------------DDARRVF 307
                V+L + ++DMY KCG +                               DDAR+VF
Sbjct: 252 GVRCTVRLMNVVMDMYIKCGDLERAKSVFEGIDKKTIVSWTTMIVGYAQFGLMDDARKVF 311

Query: 308 DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367
           D M +++VF W +++ GY +     +AL LF  MQE  V+P+ +T +  LSAC   G ++
Sbjct: 312 DEMPERDVFPWNALMTGYVQCKRGKEALRLFHDMQEAMVEPDDITMVNLLSACSQLGALE 371

Query: 368 KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
            G  +   ++R       M     +VD+  + G++E+A++   E+PEK N+  W A++S 
Sbjct: 372 MGMWVHHYIDRRRVSLSVMLG-TNLVDMYSKCGNIEKAIRVFKEIPEK-NALTWTAMISG 429

Query: 428 CRLHDDVEMA 437
              H   ++A
Sbjct: 430 LANHGHADVA 439


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 145/433 (33%), Positives = 239/433 (55%), Gaps = 15/433 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD-ELPQRTLSAYNYMIAGYLKN 124
           ++H+ + K G     N+   L   + KCG L  A  +F      R + ++  +I+G ++N
Sbjct: 323 QLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQN 382

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
           G +  ++ L  ++      P+ +T+S +LKAS    S +P P+     +HAQ++K + + 
Sbjct: 383 GDIPLAVVLFSRMREDRVMPNEFTYSAMLKASL---SILP-PQ-----IHAQVIKTNYQH 433

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
              + TAL+ SY K G T  A  +F M+ +K+V+  ++M+S     G  E A  +F K  
Sbjct: 434 IPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNKMA 493

Query: 245 EKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
            + I       +++I+  +       +  + H   IK  + + + + SALV MY++ G I
Sbjct: 494 IQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRKGNI 553

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           D A+ VF+    +++ +W SMI GY ++G   +A+E F  M+   +Q + VTFL  +  C
Sbjct: 554 DSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVIMGC 613

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            H GLV +G++ F+SM RD+ + P MEHYACMVDL  RAG L++ +  + +MP    + V
Sbjct: 614 THNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAGAMV 673

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W  LL +CR+H +VE+   +A+++  L  +D    YV LSN  AAAGKW    E+R+ M 
Sbjct: 674 WRTLLGACRVHKNVELGKFSADKLLSLEPHD-SSTYVLLSNIYAAAGKWKERDEVRKLMD 732

Query: 481 LRGVLKDTGCSWV 493
            R V K+ GCSW+
Sbjct: 733 YRKVKKEAGCSWI 745



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 106/398 (26%), Positives = 196/398 (49%), Gaps = 23/398 (5%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           NP T  S+ SA+      D    G ++HA   K G + +  +   L+ ++ KCG ++ A 
Sbjct: 200 NPFTFASVLSAVASQGALD---LGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAK 256

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
            +F+ +  R + ++N ++AG   N    E+L L  +  ++  +    T++ ++K    C 
Sbjct: 257 SVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESRATMGKMTQSTYATVIKL---CA 313

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML-EKNVIC 219
           +   L   L R +H+ +LK        + TAL D+Y K G+ + A  +F M    +NV+ 
Sbjct: 314 NLKQLA--LARQLHSCVLKHGFHLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVS 371

Query: 220 STSMISGFMSQGFVEDAEEIFRKTVEKDIV----VYNAMIEGYSISIETARKALEVHCQL 275
            T++ISG +  G +  A  +F +  E  ++     Y+AM++  S+SI       ++H Q+
Sbjct: 372 WTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA-SLSILPP----QIHAQV 426

Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
           IK  +     +G+AL+  Y+K G  +DA  +F  ++QK+V  W++M+  + + G+   A 
Sbjct: 427 IKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGAT 486

Query: 336 ELFCMMQECCVQPNYVTFLGALSACG--HAGLVDKGREIFESMERDYSMKPKMEHYACMV 393
            LF  M    ++PN  T    + AC    AG VD+GR+ F ++   Y     +   + +V
Sbjct: 487 YLFNKMAIQGIKPNEFTISSVIDACACPSAG-VDQGRQ-FHAISIKYRYHDAICVSSALV 544

Query: 394 DLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
            +  R G+++ A + V E     +   W +++S    H
Sbjct: 545 SMYSRKGNIDSA-QIVFERQTDRDLVSWNSMISGYAQH 581



 Score =  101 bits (252), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 156/344 (45%), Gaps = 15/344 (4%)

Query: 103 FDELPQRTLS-AYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161
            DE+P+R  +   N ++  Y + G V E L         G   D  T S +LKA   CRS
Sbjct: 55  LDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKA---CRS 111

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDV-LYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
            VP  R LG  +H   +KC     +V   T+LVD Y+K G       VF+ M +KNV+  
Sbjct: 112 -VP-DRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTW 169

Query: 221 TSMISGFM-SQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE----VHCQL 275
           TS+++G   +Q   E     FR   E   +  N       +S   ++ AL+    VH Q 
Sbjct: 170 TSLLTGCAHAQMHSEVMALFFRMRAEG--IWPNPFTFASVLSAVASQGALDLGQRVHAQS 227

Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
           +K      V + ++L++MYAKCG ++DA+ VF+ M+ +++ +W +++ G   N    +AL
Sbjct: 228 VKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEAL 287

Query: 336 ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDL 395
           +LF   +    +    T+   +  C +   +   R++   + + +           + D 
Sbjct: 288 QLFHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLK-HGFHLTGNVMTALADA 346

Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANI 439
             + G L  AL          N   W A++S C  + D+ +A +
Sbjct: 347 YSKCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVV 390



 Score = 43.9 bits (102), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 64/140 (45%), Gaps = 8/140 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G + HA   K        +S  L+ ++ + G +  A  +F+    R L ++N MI+GY +
Sbjct: 521 GRQFHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQ 580

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G   +++   R++ +SG + DG TF  ++   T     V   +    MV       D K
Sbjct: 581 HGYSMKAIETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVR------DHK 634

Query: 184 ADDVL--YTALVDSYVKGGK 201
            +  +  Y  +VD Y + GK
Sbjct: 635 INPTMEHYACMVDLYSRAGK 654


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 155/449 (34%), Positives = 248/449 (55%), Gaps = 20/449 (4%)

Query: 64  GLKIHAHITKTG-VKPNTNISIKLLILHLKCGALKYAGQMFDELPQ--RTLSAYNYMIAG 120
           G ++HA++ K   +  N+ ++  L+ ++     +  A Q+FD +P   + L  +N MI G
Sbjct: 292 GREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICG 351

Query: 121 YLKNGQVEESLSLVRKL-VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           Y + G  EE+L L  ++   +G  P   T + +L A  C RS     +     VH  ++K
Sbjct: 352 YAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPA--CARSEAFAGKE---AVHGYVVK 406

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
             +  +  +  AL+D Y + GKT  AR +F M+   +V+   ++I+G + QG V DA ++
Sbjct: 407 RGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQL 466

Query: 240 FR--KTVEKDIVVYNA-----MIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVD 292
            R  + +E+  VV NA     ++ G +I    AR   E+H   +++    DV +GSALVD
Sbjct: 467 AREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGK-EIHGYAVRHALDTDVAVGSALVD 525

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNYV 351
           MYAKCG +  +R VFD + ++N  TW  +I  YG +G   +A  LF  M      +PN V
Sbjct: 526 MYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEV 585

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
           TF+ AL+AC H+G+VD+G ++F +MERD+ ++P  +  AC+VD+LGRAG L++A   V  
Sbjct: 586 TFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTS 645

Query: 412 MPE-KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
           M   +     W+ +L +CRLH +V +  I A E       +    YV L N  +AAG+W 
Sbjct: 646 METGEQQVSAWSTMLGACRLHRNVHLGEI-AGERLLELEPEEASHYVLLCNIYSAAGQWT 704

Query: 471 SVTELREKMKLRGVLKDTGCSWVGTESGL 499
              E+R +M+ RGV K+ GCSW+  +  +
Sbjct: 705 RAAEVRSRMRRRGVAKEPGCSWIEVDGAI 733



 Score =  115 bits (289), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 112/410 (27%), Positives = 197/410 (48%), Gaps = 27/410 (6%)

Query: 41  NPLTATSLPSALQ---HYINSDTPF-YGLKIHAHITKTGV-KPNTNISIK-LLILHLKCG 94
           +PLT+ +L S L+   H   +      G + HA   K G+   +   +   LL ++ + G
Sbjct: 160 HPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLG 219

Query: 95  ALKYAGQMF-DELPQR-TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
            +  A ++F    P R  +  +N M++  +++G  +E++  +  +V+ G RPDG TF+  
Sbjct: 220 LVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASA 279

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCD-VKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           L A  C R  +    ++GR +HA ++K D + A+  + +ALVD Y    +   AR VFDM
Sbjct: 280 LPA--CSRLEL---LDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDM 334

Query: 212 MLE--KNVICSTSMISGFMSQGFVEDAEEIF-RKTVEKDIV----VYNAMIEGYSISIET 264
           + +  K +    +MI G+   G  E+A  +F R   E   V       +++   + S   
Sbjct: 335 VPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAF 394

Query: 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
           A K   VH  ++K     +  + +AL+DMYA+ GK D ARR+F  +   +V +W ++I G
Sbjct: 395 AGKE-AVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITG 453

Query: 325 YGKNGNPNQALELFCMMQ---ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
               G+   A +L   MQ   E  V PN +T +  L  C       +G+EI     R ++
Sbjct: 454 CVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVR-HA 512

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           +   +   + +VD+  + G L  +      +P + N+  W  L+ +  +H
Sbjct: 513 LDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRR-NTITWNVLIMAYGMH 561



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 7/168 (4%)

Query: 60  TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIA 119
            P  G +IH +  +  +  +  +   L+ ++ KCG L  +  +FD LP+R    +N +I 
Sbjct: 497 APARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIM 556

Query: 120 GYLKNGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
            Y  +G   E+  L  ++ +SGE RP+  TF   L A   C  +  + R L ++ HA   
Sbjct: 557 AYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAA---CSHSGMVDRGL-QLFHAMER 612

Query: 179 KCDVKADDVLYTALVDSYVKGGK--TSYARIVFDMMLEKNVICSTSMI 224
              V+    +   +VD   + G+   +YA +      E+ V   ++M+
Sbjct: 613 DHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTML 660


>gi|48716903|dbj|BAD23598.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 755

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 143/443 (32%), Positives = 242/443 (54%), Gaps = 50/443 (11%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           L+  +++ G +  A ++FD +P R + ++N M++GY + G + E+    R+L  +    D
Sbjct: 199 LMSGYVQWGKMSEARELFDRMPGRDVVSWNIMVSGYARRGDMVEA----RRLFDAAPVRD 254

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQ-ILKCDVKADDVLYTALVDSYVKGGKTSY 204
            +T++ ++                G +  A+ +     + + V + A+V +Y++      
Sbjct: 255 VFTWTAVVSGYA----------QNGMLEEARRVFDAMPERNAVSWNAMVAAYIQRRMMDE 304

Query: 205 ARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS----- 259
           A+ +F+MM  +NV    +M++G+   G +E+A+ +F    +KD V + AM+  YS     
Sbjct: 305 AKELFNMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQKDAVSWAAMLAAYSQGGCS 364

Query: 260 -----ISIETAR--------------------KALE----VHCQLIKNVFFEDVKLGSAL 290
                + IE  R                     ALE    +H +LI+  +     +G+AL
Sbjct: 365 EETLQLFIEMGRCGEWVNRSAFACVLSTCADIAALECGMQLHGRLIRAGYGVGCFVGNAL 424

Query: 291 VDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY 350
           + MY KCG ++DAR  F+ M++++V +W +MI GY ++G   +ALE+F MM+    +P+ 
Sbjct: 425 LAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYARHGFGKEALEIFDMMRTTSTKPDD 484

Query: 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410
           +T +G L+AC H+GLV+KG   F SM  D+ +  K EHY CM+DLLGRAG L +A   + 
Sbjct: 485 ITLVGVLAACSHSGLVEKGISYFYSMHHDFGVTAKPEHYTCMIDLLGRAGRLAEAHDLMK 544

Query: 411 EMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
           +MP +P+S +W ALL + R+H + E+   AA +IF+L   +  G YV LSN  A++GKW 
Sbjct: 545 DMPFEPDSTMWGALLGASRIHRNPELGRSAAEKIFELEPEN-AGMYVLLSNIYASSGKWR 603

Query: 471 SVTELREKMKLRGVLKDTGCSWV 493
              ++R  M+ RGV K  G SW+
Sbjct: 604 DARKMRVMMEERGVKKVPGFSWI 626



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/354 (28%), Positives = 181/354 (51%), Gaps = 32/354 (9%)

Query: 76  VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVR 135
           ++P    S K +  H++ G +  A ++F  +P+R+ S YN M+AGY  NG++  + SL R
Sbjct: 34  LEPEVIRSNKAITAHMRAGRVADAERLFAAMPRRSTSTYNAMLAGYSANGRLPLAASLFR 93

Query: 136 KLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDS 195
            +     RPD Y+++ +L A     S++   R L   +  +        D V Y  ++ S
Sbjct: 94  AI----PRPDNYSYNTLLHA-LAVSSSLADARGLFDEMPVR--------DSVTYNVMISS 140

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMI 255
           +   G  S AR  FD+  EK+ +    M++ ++  G VE+A  +F    E D++ +NA++
Sbjct: 141 HANHGLVSLARHYFDLAPEKDAVSWNGMLAAYVRNGRVEEARGLFNSRTEWDVISWNALM 200

Query: 256 EGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
            GY +      +A E    L   +   DV   + +V  YA+ G + +ARR+FD    ++V
Sbjct: 201 SGY-VQWGKMSEARE----LFDRMPGRDVVSWNIMVSGYARRGDMVEARRLFDAAPVRDV 255

Query: 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES 375
           FTWT+++ GY +NG   +A  +F  M E     N V++   ++A     ++D+ +E+F  
Sbjct: 256 FTWTAVVSGYAQNGMLEEARRVFDAMPE----RNAVSWNAMVAAYIQRRMMDEAKELF-- 309

Query: 376 MERDYSMKP--KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
                +M P   +  +  M+    +AG LE+A      MP+K ++  WAA+L++
Sbjct: 310 -----NMMPCRNVASWNTMLTGYAQAGMLEEAKAVFDTMPQK-DAVSWAAMLAA 357



 Score = 65.5 bits (158), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 56/260 (21%), Positives = 111/260 (42%), Gaps = 41/260 (15%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+++H  + + G      +   LL ++ KCG ++ A   F+E+ +R + ++N MIAGY +
Sbjct: 402 GMQLHGRLIRAGYGVGCFVGNALLAMYFKCGNMEDARNAFEEMEERDVVSWNTMIAGYAR 461

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G  +E+L +   + ++  +PD  T   +L A  C  S + + + +    ++      V 
Sbjct: 462 HGFGKEALEIFDMMRTTSTKPDDITLVGVLAA--CSHSGL-VEKGIS-YFYSMHHDFGVT 517

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           A    YT ++D   + G+ + A    D+M +      ++M    +    +    E+ R  
Sbjct: 518 AKPEHYTCMIDLLGRAGRLAEAH---DLMKDMPFEPDSTMWGALLGASRIHRNPELGRSA 574

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
            EK                             I  +  E+  +   L ++YA  GK  DA
Sbjct: 575 AEK-----------------------------IFELEPENAGMYVLLSNIYASSGKWRDA 605

Query: 304 RRVFDHMQQKNV-----FTW 318
           R++   M+++ V     F+W
Sbjct: 606 RKMRVMMEERGVKKVPGFSW 625


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 146/436 (33%), Positives = 236/436 (54%), Gaps = 12/436 (2%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G  +H +  +        +   LL ++ KC  L YA ++FD +  R   +++ MI GY+
Sbjct: 228 HGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYV 287

Query: 123 KNGQVEESLSLVRKLV-SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            +  ++E+L L  +++      P   T   +L+A   C     L R  GR +H  I+K  
Sbjct: 288 XSDCMKEALELFDQMILKDAMDPTPVTLGSVLRA---CAKLTDLSR--GRKLHCYIIKLG 342

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
              D +L   L+  Y K G    A   FD M  K+ +  ++++SG +  G    A  IFR
Sbjct: 343 XVLDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFR 402

Query: 242 ----KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
                 ++ D+     ++   S  +   +     H  LI   F  D  + +AL+DMY+KC
Sbjct: 403 MMQLSGIDPDLTTMLGVLPACS-HLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKC 461

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           GKI  AR VF+ M + ++ +W +MI GYG +G   +AL LF  +    ++P+ +TF+  L
Sbjct: 462 GKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLL 521

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           S+C H+GLV +GR  F++M RD+S+ P+MEH  CMVD+LGRAG +++A  F+  MP +P+
Sbjct: 522 SSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPD 581

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
             +W+ALLS+CR+H ++E+    + +I  L   +  G +V LSN  +AAG+WD    +R 
Sbjct: 582 VRIWSALLSACRIHKNIELGEEVSKKIQSLGP-ESTGNFVLLSNIYSAAGRWDDAAHIRI 640

Query: 478 KMKLRGVLKDTGCSWV 493
             K  G+ K  GCSW+
Sbjct: 641 TQKDWGLKKIPGCSWI 656



 Score =  144 bits (364), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 113/403 (28%), Positives = 204/403 (50%), Gaps = 21/403 (5%)

Query: 52  LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL 111
           L+  I S +     KIH H  K     ++++  KL  L+L C  +  A ++FDE+P  ++
Sbjct: 15  LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSV 74

Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR 171
             +N +I  Y  NG  + ++ L   ++  G RP+ YT+  +LKA   C   + +   +  
Sbjct: 75  ILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKA---CSGLLAIEDGVEI 131

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
             HA++    +++D  + TALVD Y K G    A+ +F  M  ++V+   +MI+G    G
Sbjct: 132 HSHAKMF--GLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYG 189

Query: 232 FVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETAR-----KALEVHCQLIKNVFFEDVKL 286
             +DA ++  +  E+ I   ++ I G   ++  A+     KAL  +C  ++  F   V +
Sbjct: 190 LCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYC--VRRSFDNGVVV 247

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF-CMMQECC 345
           G+ L+DMYAKC  +  AR++FD M  +N  +W++MI GY  +    +ALELF  M+ +  
Sbjct: 248 GTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMILKDA 307

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
           + P  VT    L AC     + +GR++   + +   +   +     ++ +  + G ++ A
Sbjct: 308 MDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVLDILLGNT-LLSMYAKCGVIDDA 366

Query: 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIA-ANEIFKL 447
           ++F   M  K +S  ++A++S C     V+  N A A  IF++
Sbjct: 367 IRFFDXMNPK-DSVSFSAIVSGC-----VQNGNAAVALSIFRM 403


>gi|302785459|ref|XP_002974501.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
 gi|300158099|gb|EFJ24723.1| hypothetical protein SELMODRAFT_101455 [Selaginella moellendorffii]
          Length = 635

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 155/435 (35%), Positives = 235/435 (54%), Gaps = 17/435 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH HI   G K +  +   L+ ++ KCG+L+ A  +F   P+R + ++  M+A +  
Sbjct: 76  GKRIHYHIVLCGFKSSRYLCNLLVEMYGKCGSLQAAKSVFHITPRRNVFSWTIMVAAFAH 135

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG   ++L+L+  +   G  P+  TF  +L A     +   L R  GR +H +I  C   
Sbjct: 136 NGHYMDALNLLEIMDLEGISPNSITFIELLGAVA---ALSWLDR--GRALHRRIACCGFL 190

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR-- 241
           AD  +   L++ Y K    + A  VF+ +  ++VI  T++++ +   GF  DA ++F   
Sbjct: 191 ADIFVANCLINMYAKCRSLADACSVFESLTSRSVIAWTALVAAYALNGFFRDALKVFLLM 250

Query: 242 --KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               VE   V +  +++     I       EVH  +I      +V +G+AL++MY KC  
Sbjct: 251 TLDGVEPTEVTFVTVVD-VCADIAVFGIGREVH-GVIDARSEANVCVGNALINMYGKCAS 308

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC-----CVQPNYVTFL 354
            D+AR+VFD MQ+K++ TW SMI  YG+NG   QALE++  MQE       +  + +TF+
Sbjct: 309 PDEARKVFDAMQRKDIITWNSMIAVYGQNGYGFQALEIYKRMQESRMTILGITHDDITFI 368

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
           G L AC HAGLV    +++ SM  DY  KP      C++DLLGRAG L++A +F+  MP 
Sbjct: 369 GVLFACSHAGLVKDSCKLYSSMIGDYGFKPTSLQCGCLIDLLGRAGWLDEAEEFINSMPY 428

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
            P+  +W  LL +C  H DVE A  AA+ I  L   D  G+YVALSN  A A +WD +  
Sbjct: 429 HPDHTIWTILLGACITHADVERAARAADRIMALRPTD-SGSYVALSNLYALAERWDDMAR 487

Query: 475 LREKMKLRGVLKDTG 489
           +R+ M  RGV K  G
Sbjct: 488 MRKLMDQRGVFKMAG 502


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 155/449 (34%), Positives = 248/449 (55%), Gaps = 20/449 (4%)

Query: 64  GLKIHAHITKTG-VKPNTNISIKLLILHLKCGALKYAGQMFDELPQ--RTLSAYNYMIAG 120
           G ++HA++ K   +  N+ ++  L+ ++     +  A Q+FD +P   + L  +N MI G
Sbjct: 290 GREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICG 349

Query: 121 YLKNGQVEESLSLVRKL-VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           Y + G  EE+L L  ++   +G  P   T + +L A  C RS     +     VH  ++K
Sbjct: 350 YAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPA--CARSEAFAGKE---AVHGYVVK 404

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
             +  +  +  AL+D Y + GKT  AR +F M+   +V+   ++I+G + QG V DA ++
Sbjct: 405 RGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQL 464

Query: 240 FR--KTVEKDIVVYNA-----MIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVD 292
            R  + +E+  VV NA     ++ G +I    AR   E+H   +++    DV +GSALVD
Sbjct: 465 AREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGK-EIHGYAVRHALDTDVAVGSALVD 523

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNYV 351
           MYAKCG +  +R VFD + ++N  TW  +I  YG +G   +A  LF  M      +PN V
Sbjct: 524 MYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEV 583

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
           TF+ AL+AC H+G+VD+G ++F +MERD+ ++P  +  AC+VD+LGRAG L++A   V  
Sbjct: 584 TFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTS 643

Query: 412 MPE-KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
           M   +     W+ +L +CRLH +V +  I A E       +    YV L N  +AAG+W 
Sbjct: 644 MEAGEQQVSAWSTMLGACRLHRNVHLGEI-AGERLLELEPEEASHYVLLCNIYSAAGQWT 702

Query: 471 SVTELREKMKLRGVLKDTGCSWVGTESGL 499
              E+R +M+ RGV K+ GCSW+  +  +
Sbjct: 703 RAAEVRSRMRRRGVAKEPGCSWIEVDGAI 731



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 111/410 (27%), Positives = 197/410 (48%), Gaps = 27/410 (6%)

Query: 41  NPLTATSLPSALQHYIN----SDTPFYGLKIHAHITKTGV-KPNTNISIK-LLILHLKCG 94
           +PLT+ +L S L+   +    +     G + HA   K G+   +   +   LL ++ + G
Sbjct: 158 HPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLG 217

Query: 95  ALKYAGQMF-DELPQR-TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
            +  A ++F    P R  +  +N M++  +++G  +E++  +  +V+ G RPDG TF+  
Sbjct: 218 LVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASA 277

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCD-VKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           L A  C R  +    ++GR +HA ++K D + A+  + +ALVD Y    +   AR VFDM
Sbjct: 278 LPA--CSRLEL---LDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDM 332

Query: 212 MLE--KNVICSTSMISGFMSQGFVEDAEEIF-RKTVEKDIV----VYNAMIEGYSISIET 264
           + +  K +    +MI G+   G  E+A  +F R   E   V       +++   + S   
Sbjct: 333 VPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAF 392

Query: 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
           A K   VH  ++K     +  + +AL+DMYA+ GK D ARR+F  +   +V +W ++I G
Sbjct: 393 AGKE-AVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITG 451

Query: 325 YGKNGNPNQALELFCMMQ---ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
               G+   A +L   MQ   E  V PN +T +  L  C       +G+EI     R ++
Sbjct: 452 CVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVR-HA 510

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           +   +   + +VD+  + G L  +      +P + N+  W  L+ +  +H
Sbjct: 511 LDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRR-NTITWNVLIMAYGMH 559



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 7/168 (4%)

Query: 60  TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIA 119
            P  G +IH +  +  +  +  +   L+ ++ KCG L  +  +FD LP+R    +N +I 
Sbjct: 495 APARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIM 554

Query: 120 GYLKNGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
            Y  +G   E+  L  ++ +SGE RP+  TF   L A   C  +  + R L ++ HA   
Sbjct: 555 AYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAA---CSHSGMVDRGL-QLFHAMER 610

Query: 179 KCDVKADDVLYTALVDSYVKGGK--TSYARIVFDMMLEKNVICSTSMI 224
              V+    +   +VD   + G+   +YA +      E+ V   ++M+
Sbjct: 611 DHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTML 658


>gi|297844988|ref|XP_002890375.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336217|gb|EFH66634.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 760

 Score =  252 bits (643), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 151/499 (30%), Positives = 255/499 (51%), Gaps = 71/499 (14%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH     +G+  +  +   L  ++++CG +  A ++FD + ++ +   + ++ GY +
Sbjct: 135 GKQIHCVACVSGLDMDAFVQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYAR 194

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKAST-------------------CCRSNVP 164
            G +EE + ++ ++  SG  P+  +++ IL                        C   V 
Sbjct: 195 KGCLEEVVRILSEMEKSGIEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVT 254

Query: 165 ----LPR-------NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFD--- 210
               LP        N+GR +H  ++K  +  D  + +A++D Y K G       +FD   
Sbjct: 255 VSSVLPSVGDSENLNMGRQIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFE 314

Query: 211 MM--------------------------------LEKNVICSTSMISGFMSQGFVEDAEE 238
           MM                                +E NV+  TS+I+G    G   +A E
Sbjct: 315 MMETGVCNAYITGLSRNGLVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALE 374

Query: 239 IFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
           +FR+     V+ + V   +M+     +I         H   ++    +DV +GSAL+DMY
Sbjct: 375 LFREMQVAGVKPNRVTIPSMLPACG-NIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMY 433

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           AKCG+I  ++ VF+ M  KN+  W S+++GY  +G   + + +F  +    ++P++++F 
Sbjct: 434 AKCGRIKMSQIVFNMMPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFT 493

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             LSACG  GL D+G + F  M  +Y +KP++EHY+CMV+LLGRAG L++A   + E+P 
Sbjct: 494 SLLSACGQVGLTDEGWKYFNMMSEEYGIKPRLEHYSCMVNLLGRAGKLQEAYDLIKEIPF 553

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
           +P+S VW ALL+SCRL ++V++A IAA ++F L   + PG YV +SN  AA G W  V  
Sbjct: 554 EPDSCVWGALLNSCRLQNNVDLAEIAAQKLFHLEP-ENPGTYVLMSNIYAAKGMWTEVDS 612

Query: 475 LREKMKLRGVLKDTGCSWV 493
           +R KM+  G+ K+ GCSW+
Sbjct: 613 IRNKMESLGLKKNPGCSWI 631



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 106/505 (20%), Positives = 203/505 (40%), Gaps = 94/505 (18%)

Query: 68  HAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV 127
           HA I K+G + +  IS KL+  +        A  +   +P  T+ +++ +I    K    
Sbjct: 38  HARILKSGAQNDGYISAKLIASYSNYNCFNDADLILQSIPDPTVYSFSSLIYALTKAKLF 97

Query: 128 EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV 187
            +S+ +  ++ S G  PD +    + K   C   +       G+ +H       +  D  
Sbjct: 98  SQSIGVFSRMFSHGLIPDTHVLPNLFK--VCAELSA---FKAGKQIHCVACVSGLDMDAF 152

Query: 188 LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKT 243
           +  +L   Y++ G+   AR VFD M EK+V+  ++++ G+  +G +E+   I     +  
Sbjct: 153 VQGSLFHMYMRCGRMGDARKVFDRMSEKDVVTCSALLCGYARKGCLEEVVRILSEMEKSG 212

Query: 244 VEKDIVVYNAMIEGYSIS----------------------------------IETARKAL 269
           +E +IV +N ++ G++ S                                   E      
Sbjct: 213 IEPNIVSWNGILSGFNRSGYHKEAVIMFQKMHHLGFCPDQVTVSSVLPSVGDSENLNMGR 272

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ------------------ 311
           ++H  +IK    +D  + SA++DMY K G +    ++FD  +                  
Sbjct: 273 QIHGYVIKQGLLKDKCVISAMLDMYGKSGHVYGIIKLFDEFEMMETGVCNAYITGLSRNG 332

Query: 312 -----------------QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
                            + NV +WTS+I G  +NG   +ALELF  MQ   V+PN VT  
Sbjct: 333 LVDKALEMFGLFKEQKMELNVVSWTSIIAGCAQNGKDIEALELFREMQVAGVKPNRVTIP 392

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             L ACG+   +  GR       R + +   +   + ++D+  + G ++ + + V  M  
Sbjct: 393 SMLPACGNIAALGHGRSTHGFAVRVHLLD-DVHVGSALIDMYAKCGRIKMS-QIVFNMMP 450

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFK--LNANDRPGAYVALSNTLAAAGK---- 468
             N   W +L++   +H   +        IF+  +    +P  +++ ++ L+A G+    
Sbjct: 451 TKNLVCWNSLMNGYSMHGKAK----EVMSIFESLMRTRLKPD-FISFTSLLSACGQVGLT 505

Query: 469 ---WDSVTELREKMKLRGVLKDTGC 490
              W     + E+  ++  L+   C
Sbjct: 506 DEGWKYFNMMSEEYGIKPRLEHYSC 530



 Score = 52.0 bits (123), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 26/110 (23%), Positives = 57/110 (51%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
            ++PS L    N     +G   H    +  +  + ++   L+ ++ KCG +K +  +F+ 
Sbjct: 389 VTIPSMLPACGNIAALGHGRSTHGFAVRVHLLDDVHVGSALIDMYAKCGRIKMSQIVFNM 448

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           +P + L  +N ++ GY  +G+ +E +S+   L+ +  +PD  +F+ +L A
Sbjct: 449 MPTKNLVCWNSLMNGYSMHGKAKEVMSIFESLMRTRLKPDFISFTSLLSA 498


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  251 bits (642), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 155/449 (34%), Positives = 248/449 (55%), Gaps = 20/449 (4%)

Query: 64  GLKIHAHITKTG-VKPNTNISIKLLILHLKCGALKYAGQMFDELPQ--RTLSAYNYMIAG 120
           G ++HA++ K   +  N+ ++  L+ ++     +  A Q+FD +P   + L  +N MI G
Sbjct: 290 GREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICG 349

Query: 121 YLKNGQVEESLSLVRKL-VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           Y + G  EE+L L  ++   +G  P   T + +L A  C RS     +     VH  ++K
Sbjct: 350 YAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPA--CARSEAFAGKE---AVHGYVVK 404

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
             +  +  +  AL+D Y + GKT  AR +F M+   +V+   ++I+G + QG V DA ++
Sbjct: 405 RGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQL 464

Query: 240 FR--KTVEKDIVVYNA-----MIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVD 292
            R  + +E+  VV NA     ++ G +I    AR   E+H   +++    DV +GSALVD
Sbjct: 465 AREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGK-EIHGYAVRHALDTDVAVGSALVD 523

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNYV 351
           MYAKCG +  +R VFD + ++N  TW  +I  YG +G   +A  LF  M      +PN V
Sbjct: 524 MYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEV 583

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
           TF+ AL+AC H+G+VD+G ++F +MERD+ ++P  +  AC+VD+LGRAG L++A   V  
Sbjct: 584 TFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTS 643

Query: 412 MPE-KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
           M   +     W+ +L +CRLH +V +  I A E       +    YV L N  +AAG+W 
Sbjct: 644 METGEQQVSAWSTMLGACRLHRNVHLGEI-AGERLLELEPEEASHYVLLCNIYSAAGQWT 702

Query: 471 SVTELREKMKLRGVLKDTGCSWVGTESGL 499
              E+R +M+ RGV K+ GCSW+  +  +
Sbjct: 703 RAAEVRSRMRRRGVAKEPGCSWIEVDGAI 731



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 111/410 (27%), Positives = 197/410 (48%), Gaps = 27/410 (6%)

Query: 41  NPLTATSLPSALQHYIN----SDTPFYGLKIHAHITKTGV-KPNTNISIK-LLILHLKCG 94
           +PLT+ +L S L+   +    +     G + HA   K G+   +   +   LL ++ + G
Sbjct: 158 HPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLG 217

Query: 95  ALKYAGQMF-DELPQR-TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
            +  A ++F    P R  +  +N M++  +++G  +E++  +  +V+ G RPDG TF+  
Sbjct: 218 LVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASA 277

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCD-VKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           L A  C R  +    ++GR +HA ++K D + A+  + +ALVD Y    +   AR VFDM
Sbjct: 278 LPA--CSRLEL---LDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDM 332

Query: 212 MLE--KNVICSTSMISGFMSQGFVEDAEEIF-RKTVEKDIV----VYNAMIEGYSISIET 264
           + +  K +    +MI G+   G  E+A  +F R   E   V       +++   + S   
Sbjct: 333 VPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPACARSEAF 392

Query: 265 ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
           A K   VH  ++K     +  + +AL+DMYA+ GK D ARR+F  +   +V +W ++I G
Sbjct: 393 AGKE-AVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITG 451

Query: 325 YGKNGNPNQALELFCMMQ---ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
               G+   A +L   MQ   E  V PN +T +  L  C       +G+EI     R ++
Sbjct: 452 CVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVR-HA 510

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           +   +   + +VD+  + G L  +      +P + N+  W  L+ +  +H
Sbjct: 511 LDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRR-NTITWNVLIMAYGMH 559



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/168 (25%), Positives = 78/168 (46%), Gaps = 7/168 (4%)

Query: 60  TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIA 119
            P  G +IH +  +  +  +  +   L+ ++ KCG L  +  +FD LP+R    +N +I 
Sbjct: 495 APARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIM 554

Query: 120 GYLKNGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
            Y  +G   E+  L  ++ +SGE RP+  TF   L A   C  +  + R L ++ HA   
Sbjct: 555 AYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAA---CSHSGMVDRGL-QLFHAMER 610

Query: 179 KCDVKADDVLYTALVDSYVKGGK--TSYARIVFDMMLEKNVICSTSMI 224
              V+    +   +VD   + G+   +YA +      E+ V   ++M+
Sbjct: 611 DHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQQVSAWSTML 658


>gi|414865824|tpg|DAA44381.1| TPA: hypothetical protein ZEAMMB73_039747 [Zea mays]
          Length = 645

 Score =  251 bits (642), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 144/459 (31%), Positives = 251/459 (54%), Gaps = 12/459 (2%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           +P   ++  + L+  + S     G ++HA +  +G   +  ++ +L+ L+  CG +  A 
Sbjct: 64  SPYNHSNYATILRSCVLSRAVRPGRQLHARLLVSGTGLDAVLATRLVDLYASCGHVSLAR 123

Query: 101 QMFDELP-QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTC 158
           ++FDE+P Q  +  +N +I  Y ++G  E ++ L R +++ G  +PD +T+  +LKA   
Sbjct: 124 RVFDEMPNQGNVFLWNVLIRAYARDGPCEAAIELYRAMLAYGSMKPDNFTYPPVLKA--- 180

Query: 159 CRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI 218
           C + + L  + GR VH ++++ +   D  + T L+D Y K G    A  VF+    ++  
Sbjct: 181 CAALLDL--SAGREVHDRVMRTNWATDVFVCTGLIDMYAKCGCMDEAWAVFNDTTIRDAA 238

Query: 219 CSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETAR---KALEVHCQL 275
              SMI+     G   +A  + R    + I    A +     +   A    +  E+H   
Sbjct: 239 VWNSMIAACGQNGRPAEALTLCRNMAAEGIAPTIATLVSAISAAAVASALPRGRELHGYG 298

Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
            +  F    KL ++L+DMYAK G +  A  +F+ +  + + +W +MI G+G +G+ + A 
Sbjct: 299 WRRGFGSQDKLKTSLLDMYAKSGWVMVAHVLFEQLLHRELISWNAMICGFGMHGHADHAF 358

Query: 336 ELFCMMQ-ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394
           ELF  M+ E  V P+++TF+G LSAC H G+V + +E+F+ M   YS+KP ++HY C+VD
Sbjct: 359 ELFSRMRSEAQVMPDHITFVGVLSACNHGGMVQEAKEVFDLMVTVYSIKPTVQHYTCLVD 418

Query: 395 LLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG 454
           +LG +G  ++A   +  M  KP+S +W ALL+ C++H +VE+A +A  ++ +L   D  G
Sbjct: 419 VLGHSGRFKEASDVIKGMLVKPDSGIWGALLNGCKIHKNVELAELALQKLIELEPED-AG 477

Query: 455 AYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            YV LSN  A +GKW+    +R+ M  RG+ K   CSW+
Sbjct: 478 NYVLLSNIYAESGKWEEAARVRKLMTNRGLKKIIACSWI 516


>gi|356495396|ref|XP_003516564.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Glycine max]
          Length = 516

 Score =  251 bits (642), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 145/463 (31%), Positives = 237/463 (51%), Gaps = 42/463 (9%)

Query: 65  LKIHAHITKTGVKPNTNISIKLLILH--LKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           ++IH  + K G   N      LL+ +  ++   L Y   +FD +       +N M+  Y 
Sbjct: 27  MQIHGQLLKKGTIRNQLTVSTLLVSYARIELVNLAYTRVVFDSISSPNTVIWNTMLRAYS 86

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            +   E +L L  +++ +    + YTF  +LKA   C +         + +HA I+K   
Sbjct: 87  NSNDPEAALLLYHQMLHNSVPHNSYTFPFLLKA---CSALSAFEET--QQIHAHIIKRGF 141

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             +     +L+  Y   G    A ++F+ +  ++++    MI G++  G ++ A +IF+ 
Sbjct: 142 GLEVYATNSLLRVYAISGNIQSAHVLFNQLPTRDIVSWNIMIDGYIKFGNLDMAYKIFQA 201

Query: 243 TVEKDIVVYNAMIEGY------------------------------SISIETARKALE-- 270
             EK+++ +  MI G+                              S+S      ALE  
Sbjct: 202 MPEKNVISWTTMIVGFVRIGMHKEALSLLQQMLVAGIKPDSITLSCSLSACAGLGALEQG 261

Query: 271 --VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
             +H  + KN    D  LG  L DMY KCG+++ A  VF  +++K V  WT++I G   +
Sbjct: 262 KWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAIH 321

Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           G   +AL+ F  MQ+  + PN +TF   L+AC HAGL ++G+ +FESM   Y++KP MEH
Sbjct: 322 GKGREALDWFTQMQKAGINPNSITFTAILTACSHAGLTEEGKSLFESMSSVYNIKPSMEH 381

Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
           Y CMVDL+GRAG L++A +F+  MP KPN+ +W ALL++C+LH   E+       + +L+
Sbjct: 382 YGCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGALLNACQLHKHFELGKEIGKILIELD 441

Query: 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
             D  G Y+ L++  AAAG+W+ V  +R ++K RG+L   GCS
Sbjct: 442 P-DHSGRYIHLASIYAAAGEWNQVVRVRSQIKHRGLLNHPGCS 483



 Score = 49.7 bits (117), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 84/185 (45%), Gaps = 5/185 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH +I K  +K +  +   L  +++KCG ++ A  +F +L ++ + A+  +I G   
Sbjct: 261 GKWIHTYIEKNEIKIDPVLGCVLTDMYVKCGEMEKALLVFSKLEKKCVCAWTAIIGGLAI 320

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G+  E+L    ++  +G  P+  TF+ IL   T C S+  L      +  +     ++K
Sbjct: 321 HGKGREALDWFTQMQKAGINPNSITFTAIL---TAC-SHAGLTEEGKSLFESMSSVYNIK 376

Query: 184 ADDVLYTALVDSYVKGGKTSYAR-IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
                Y  +VD   + G    AR  +  M ++ N     ++++        E  +EI + 
Sbjct: 377 PSMEHYGCMVDLMGRAGLLKEAREFIESMPVKPNAAIWGALLNACQLHKHFELGKEIGKI 436

Query: 243 TVEKD 247
            +E D
Sbjct: 437 LIELD 441


>gi|15229764|ref|NP_187753.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169981|sp|Q9CAY1.1|PP223_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g11460
 gi|12322902|gb|AAG51440.1|AC008153_13 hypothetical protein; 50785-52656 [Arabidopsis thaliana]
 gi|332641528|gb|AEE75049.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 623

 Score =  251 bits (642), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 148/454 (32%), Positives = 246/454 (54%), Gaps = 11/454 (2%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           A S P  L+   +   P  G ++H H+TK G +    +   L+ ++ KCG +  A ++F+
Sbjct: 53  AFSFPFILKSCASLSLPVSGQQLHCHVTKGGCETEPFVLTALISMYCKCGLVADARKVFE 112

Query: 105 ELPQRT-LSA-YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           E PQ + LS  YN +I+GY  N +V ++  + R++  +G   D  T   ++   T     
Sbjct: 113 ENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKETGVSVDSVTMLGLVPLCT----- 167

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
           VP    LGR +H Q +K  + ++  +  + +  Y+K G     R +FD M  K +I   +
Sbjct: 168 VPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEAGRRLFDEMPVKGLITWNA 227

Query: 223 MISGFMSQGFVEDAEEIFRKTVEKDIVVYN-AMIEGYSISIETARKAL--EVHCQLIKNV 279
           +ISG+   G   D  E++ +     +      ++   S       K +  EV   +  N 
Sbjct: 228 VISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGHEVGKLVESNG 287

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
           F  +V + +A + MYA+CG +  AR VFD M  K++ +WT+MI  YG +G     L LF 
Sbjct: 288 FVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGEIGLMLFD 347

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
            M +  ++P+   F+  LSAC H+GL DKG E+F +M+R+Y ++P  EHY+C+VDLLGRA
Sbjct: 348 DMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRA 407

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVAL 459
           G L++A++F+  MP +P+  VW ALL +C++H +V+MA +A  ++ +   N+  G YV +
Sbjct: 408 GRLDEAMEFIESMPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPNN-IGYYVLM 466

Query: 460 SNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           SN  + +   + +  +R  M+ R   K  G S+V
Sbjct: 467 SNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYV 500



 Score =  142 bits (357), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 173/358 (48%), Gaps = 14/358 (3%)

Query: 129 ESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVL 188
           ES+SL R ++ SG  PD ++F  ILK  +C   ++P+    G+ +H  + K   + +  +
Sbjct: 36  ESISLYRSMLRSGSSPDAFSFPFILK--SCASLSLPVS---GQQLHCHVTKGGCETEPFV 90

Query: 189 YTALVDSYVKGGKTSYARIVFDMMLEKN--VICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
            TAL+  Y K G  + AR VF+   + +   +C  ++ISG+ +   V DA  +FR+  E 
Sbjct: 91  LTALISMYCKCGLVADARKVFEENPQSSQLSVCYNALISGYTANSKVTDAAYMFRRMKET 150

Query: 247 DIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
            + V +  + G  + + T  + L     +H Q +K     +V + ++ + MY KCG ++ 
Sbjct: 151 GVSVDSVTMLGL-VPLCTVPEYLWLGRSLHGQCVKGGLDSEVAVLNSFITMYMKCGSVEA 209

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
            RR+FD M  K + TW ++I GY +NG     LEL+  M+   V P+  T +  LS+C H
Sbjct: 210 GRRLFDEMPVKGLITWNAVISGYSQNGLAYDVLELYEQMKSSGVCPDPFTLVSVLSSCAH 269

Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
            G    G E+ + +E +    P +      + +  R G+L +A      MP K     W 
Sbjct: 270 LGAKKIGHEVGKLVESN-GFVPNVFVSNASISMYARCGNLAKARAVFDIMPVKSLVS-WT 327

Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           A++    +H   E+  +  +++ K         +V + +  + +G  D   EL   MK
Sbjct: 328 AMIGCYGMHGMGEIGLMLFDDMIKRGIRPDGAVFVMVLSACSHSGLTDKGLELFRAMK 385


>gi|414884091|tpg|DAA60105.1| TPA: hypothetical protein ZEAMMB73_697281 [Zea mays]
          Length = 734

 Score =  251 bits (642), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 150/467 (32%), Positives = 239/467 (51%), Gaps = 43/467 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGA---------------------------- 95
           G +IH  I ++GV P+  +   +L ++ KCG                             
Sbjct: 145 GRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQKDATSWNIVIRACLQ 204

Query: 96  ---LKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
              L  A Q+FDE   R +S++N +++G +++G   E+L  ++++V +G     YT+SM+
Sbjct: 205 DGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQQMVRAGVTFSNYTYSMV 264

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM- 211
              +    S     R+LGR +H +++   ++ D  +  +L+D Y K G+   A  +FD  
Sbjct: 265 FALAGLLSS-----RDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCGEMESALSIFDRW 319

Query: 212 --MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETA---R 266
               E      ++M++G++  G  E+A E FR+ + + +     ++   + +   A    
Sbjct: 320 SDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTSVASACANAGMVE 379

Query: 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
           +  +VH  + K     D  L SA+VDMY+K G ++DA R+F   Q KNV  WT+M+  Y 
Sbjct: 380 QGRQVHGFVEKLGHRFDAPLASAIVDMYSKSGSLEDACRIFRSAQTKNVALWTTMLCSYA 439

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM 386
            +G    ALE+F  M+   + PN +T +  LSAC H+GLV  G   F  M+ +Y + P  
Sbjct: 440 SHGQGRMALEIFSRMKAEKIMPNEITLVAVLSACSHSGLVSDGYHYFNLMQEEYGIVPNT 499

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446
           EHY CMVDL GRAG L++A  F+ E      + VW  LLS+CRLH  +E A +A+ ++ +
Sbjct: 500 EHYNCMVDLYGRAGLLDKAKNFIEENKISHEAVVWKTLLSACRLHKHIEYAQLASEKLVQ 559

Query: 447 LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           L   D  G+YV +SN  A   KW    +LR  MK R V K  G SW+
Sbjct: 560 LEQYD-AGSYVLMSNMYATNNKWLDTFKLRSSMKERRVRKQPGQSWI 605



 Score =  132 bits (333), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/382 (25%), Positives = 172/382 (45%), Gaps = 46/382 (12%)

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVS--SGERPDGYTFSMI 152
            L  A ++FD  P R+L A+  +I+G  + G+  + +    +++       P+ +  + +
Sbjct: 73  GLHNAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGV 132

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           L+   CC     +    GR +H  IL+  V  D VL  A++D Y K G    AR  F  M
Sbjct: 133 LR---CCAGLGDVES--GRRIHGWILRSGVCPDVVLCNAVLDMYAKCGDHGRARRAFGAM 187

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEG--------------- 257
            +K+      +I   +  G +  A ++F ++  +D+  +N ++ G               
Sbjct: 188 AQKDATSWNIVIRACLQDGDLVGATQLFDESSLRDVSSWNTIVSGLMRHGHTTEALGRLQ 247

Query: 258 -----------YSISIETARKAL--------EVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
                      Y+ S+  A   L        ++H +++  V  ED  +G +L+DMY KCG
Sbjct: 248 QMVRAGVTFSNYTYSMVFALAGLLSSRDLGRQLHGRVVVAVLEEDAFVGCSLMDMYCKCG 307

Query: 299 KIDDARRVFDH---MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           +++ A  +FD      +   F W++M+ GY +NG   +ALE F  M    V         
Sbjct: 308 EMESALSIFDRWSDFTEDRQFAWSTMVAGYVQNGREEEALEFFRRMLREGVPAGQFILTS 367

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
             SAC +AG+V++GR++   +E+    +      + +VD+  ++GSLE A + +    + 
Sbjct: 368 VASACANAGMVEQGRQVHGFVEK-LGHRFDAPLASAIVDMYSKSGSLEDACR-IFRSAQT 425

Query: 416 PNSDVWAALLSSCRLHDDVEMA 437
            N  +W  +L S   H    MA
Sbjct: 426 KNVALWTTMLCSYASHGQGRMA 447



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 37/148 (25%), Positives = 66/148 (44%), Gaps = 8/148 (5%)

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC-MMQEC-CVQPNYVTFLGAL 357
           + +A RVFD    +++  WTS+I G  + G     +  F  M+ EC    PN     G L
Sbjct: 74  LHNAHRVFDGTPTRSLPAWTSIISGCAREGRHADGMRAFAEMLDECGATAPNAFVLAGVL 133

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
             C   G V+ GR I   + R   + P +     ++D+  + G   +A +    M +K +
Sbjct: 134 RCCAGLGDVESGRRIHGWILRS-GVCPDVVLCNAVLDMYAKCGDHGRARRAFGAMAQK-D 191

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIF 445
           +  W  ++ +C    D+    + A ++F
Sbjct: 192 ATSWNIVIRACLQDGDL----VGATQLF 215


>gi|334188487|ref|NP_200728.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170817|sp|Q9FIF7.1|PP435_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g59200, chloroplastic; Flags: Precursor
 gi|9759241|dbj|BAB09765.1| unnamed protein product [Arabidopsis thaliana]
 gi|332009773|gb|AED97156.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 544

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 147/468 (31%), Positives = 258/468 (55%), Gaps = 46/468 (9%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           IHA I +T    +  +  +L+ +     ++ YA  +F  +    +  Y  MI G++ +G+
Sbjct: 48  IHAKIIRTFHDQDAFVVFELIRVCSTLDSVDYAYDVFSYVSNPNVYLYTAMIDGFVSSGR 107

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
             + +SL  +++ +   PD Y  + +LKA   C   V       R +HAQ+LK    +  
Sbjct: 108 SADGVSLYHRMIHNSVLPDNYVITSVLKA---CDLKVC------REIHAQVLKLGFGSSR 158

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
            +   +++ Y K G+   A+ +FD M +++ + +T MI+ +   GF+++A E+F+    K
Sbjct: 159 SVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECGFIKEALELFQDVKIK 218

Query: 247 DIVVYNAMIEGYSISIETARKALEVHCQL-IKNV-------------------------- 279
           D V + AMI+G  +  +   KALE+  ++ ++NV                          
Sbjct: 219 DTVCWTAMIDGL-VRNKEMNKALELFREMQMENVSANEFTAVCVLSACSDLGALELGRWV 277

Query: 280 --FFEDVKL------GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
             F E+ ++      G+AL++MY++CG I++ARRVF  M+ K+V ++ +MI G   +G  
Sbjct: 278 HSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAMHGAS 337

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC 391
            +A+  F  M     +PN VT +  L+AC H GL+D G E+F SM+R ++++P++EHY C
Sbjct: 338 VEAINEFRDMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMKRVFNVEPQIEHYGC 397

Query: 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451
           +VDLLGR G LE+A +F+  +P +P+  +   LLS+C++H ++E+    A  +F+ + N 
Sbjct: 398 IVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFE-SENP 456

Query: 452 RPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
             G YV LSN  A++GKW   TE+RE M+  G+ K+ GCS +  ++ +
Sbjct: 457 DSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVDNQI 504



 Score = 75.1 bits (183), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 85/375 (22%), Positives = 153/375 (40%), Gaps = 76/375 (20%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSA------------ 113
           +IHA + K G   + ++ +K++ ++ K G L  A +MFDE+P R   A            
Sbjct: 144 EIHAQVLKLGFGSSRSVGLKMMEIYGKSGELVNAKKMFDEMPDRDHVAATVMINCYSECG 203

Query: 114 -------------------YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
                              +  MI G ++N ++ ++L L R++       + +T   +L 
Sbjct: 204 FIKEALELFQDVKIKDTVCWTAMIDGLVRNKEMNKALELFREMQMENVSANEFTAVCVLS 263

Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE 214
           A   C     L   LGR VH+ +    ++  + +  AL++ Y + G  + AR VF +M +
Sbjct: 264 A---CSDLGALE--LGRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRD 318

Query: 215 KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQ 274
           K+VI   +MISG    G   +A   FR  V +          G+  +  T          
Sbjct: 319 KDVISYNTMISGLAMHGASVEAINEFRDMVNR----------GFRPNQVTL--------- 359

Query: 275 LIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG----KNGN 330
                         AL++  +  G +D    VF+ M  K VF     I+ YG      G 
Sbjct: 360 -------------VALLNACSHGGLLDIGLEVFNSM--KRVFNVEPQIEHYGCIVDLLGR 404

Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
             +  E +  ++   ++P+++     LSAC   G ++ G +I + +    S  P    Y 
Sbjct: 405 VGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAKRLFE--SENPDSGTYV 462

Query: 391 CMVDLLGRAGSLEQA 405
            + +L   +G  +++
Sbjct: 463 LLSNLYASSGKWKES 477



 Score = 45.4 bits (106), Expect = 0.066,   Method: Compositional matrix adjust.
 Identities = 40/186 (21%), Positives = 90/186 (48%), Gaps = 7/186 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H+ +    ++ +  +   L+ ++ +CG +  A ++F  +  + + +YN MI+G   
Sbjct: 274 GRWVHSFVENQRMELSNFVGNALINMYSRCGDINEARRVFRVMRDKDVISYNTMISGLAM 333

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC-DV 182
           +G   E+++  R +V+ G RP+  T   +L A  C    +    ++G  V   + +  +V
Sbjct: 334 HGASVEAINEFRDMVNRGFRPNQVTLVALLNA--CSHGGLL---DIGLEVFNSMKRVFNV 388

Query: 183 KADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +     Y  +VD   + G+   A R + ++ +E + I   +++S     G +E  E+I +
Sbjct: 389 EPQIEHYGCIVDLLGRVGRLEEAYRFIENIPIEPDHIMLGTLLSACKIHGNMELGEKIAK 448

Query: 242 KTVEKD 247
           +  E +
Sbjct: 449 RLFESE 454


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 143/450 (31%), Positives = 244/450 (54%), Gaps = 9/450 (2%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +  +AL+  I      +   +H  I KT  + +  + + LL L+ + G +  A ++F+E+
Sbjct: 249 TFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEM 308

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P+  +  +++MIA + +NG   +++ +  ++      P+ +T S IL      + +    
Sbjct: 309 PKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCS---- 364

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
             LG  +H  ++K     D  +  AL+D Y K  K   A  +F  +  KNV+   ++I G
Sbjct: 365 -GLGEQLHGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVG 423

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIE---GYSISIETARKALEVHCQLIKNVFFED 283
           + + G    A  +FR+ +   + V         G   S+ +    ++VH   IK    + 
Sbjct: 424 YENLGEGGKALNMFREALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKR 483

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
           V + ++L+DMYAKCG I  A+ VF+ M+  +V +W ++I GY  +G   QAL +F +M+ 
Sbjct: 484 VAVSNSLIDMYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKG 543

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE 403
              +PN +TFLG LS C +AGL+D+G++ FESM  D+ ++P +EHY CMV L GR+G L+
Sbjct: 544 SDCKPNGLTFLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQLD 603

Query: 404 QALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL 463
           +A+  +  +P +P+  +W A+LS+     + E A  +A EI K+N  D    YV LSN  
Sbjct: 604 KAMNLIEGIPYEPSVMIWRAMLSASMNQYNEEFARRSAEEILKINPKDE-ATYVLLSNMY 662

Query: 464 AAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           A A +W +V  +R+ MK +GV K+ G SW+
Sbjct: 663 AGAKQWANVASIRKSMKEKGVKKEPGLSWI 692



 Score =  136 bits (343), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/395 (27%), Positives = 191/395 (48%), Gaps = 15/395 (3%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           NP   TS    L+ +++ D       +H+ I K G   N  +   L+  +  CG++  A 
Sbjct: 145 NPHVFTSF---LKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSAR 201

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
            +F+ +  + +  +  +++ Y++NG  E+SL L+ ++   G  P+ YTF   LKAS    
Sbjct: 202 SVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLG 261

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           +      +  + VH QILK   + D  +   L+  Y + G  S A  VF+ M + +V+  
Sbjct: 262 A-----FHFAKSVHGQILKTCYELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPW 316

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDIV----VYNAMIEGYSISIETARKALEVHCQLI 276
           + MI+ F   GF   A +IF +  E  +V      ++++ G +I  + +    ++H  ++
Sbjct: 317 SFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIG-KCSGLGEQLHGLVV 375

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           K  F  DV + +AL+D+YAKC K+D A ++F  +  KNV +W ++I GY   G   +AL 
Sbjct: 376 KVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALN 435

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           +F       V    VTF  AL AC     ++ G ++     +  + K ++     ++D+ 
Sbjct: 436 MFREALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAK-RVAVSNSLIDMY 494

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
            + G ++ A     EM E  +   W AL+S    H
Sbjct: 495 AKCGDIKVAQTVFNEM-ETIDVASWNALISGYSTH 528



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 99/419 (23%), Positives = 184/419 (43%), Gaps = 27/419 (6%)

Query: 1   MPNLSRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDT 60
           M   +RIR   FS             QT    +Q  DS+   L + +  + L+  I  + 
Sbjct: 17  MIQCNRIRQCGFSV------------QTAESSVQWSDSVVPCLDSHAYGTMLRRCIRKND 64

Query: 61  PFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120
                 IH  I K G   +   +  LL  ++K G  K A  +FDE+P+R   +Y  +  G
Sbjct: 65  SVSAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSYVTLTQG 124

Query: 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR-NLGRMVHAQILK 179
           Y      ++ + L  +L   G   + + F+  LK        V L +  +   +H+ I+K
Sbjct: 125 Y----ACQDPVGLYSRLHREGHELNPHVFTSFLKLF------VSLDKAEICWWLHSPIVK 174

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
               ++  +  AL+++Y   G    AR VF+ +L K+++    ++S ++  G  ED+ ++
Sbjct: 175 LGYDSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQL 234

Query: 240 FRKTVEKDIVVYNAMIEG---YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
             +      +  N   +     SI +     A  VH Q++K  +  D ++G  L+ +Y +
Sbjct: 235 LSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELDPRVGVGLLQLYTQ 294

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
            G + DA +VF+ M + +V  W+ MI  + +NG  N+A+++F  M+E  V PN  T    
Sbjct: 295 LGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSI 354

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
           L+ C        G ++   +         +     ++D+  +   ++ A+K   E+  K
Sbjct: 355 LNGCAIGKCSGLGEQL-HGLVVKVGFDLDVYVSNALIDVYAKCEKMDTAVKLFAELSSK 412



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 55/215 (25%), Positives = 104/215 (48%), Gaps = 15/215 (6%)

Query: 37  DSLSNPLTAT--SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           ++L N ++ T  +  SAL    +  +   G+++H    KT       +S  L+ ++ KCG
Sbjct: 439 EALRNQVSVTEVTFSSALGACASLASMELGVQVHGLAIKTNNAKRVAVSNSLIDMYAKCG 498

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
            +K A  +F+E+    ++++N +I+GY  +G   ++L +   +  S  +P+G TF  +L 
Sbjct: 499 DIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKGSDCKPNGLTFLGVL- 557

Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVL--YTALVDSYVKGGKTSYA-RIVFDM 211
            S C  SN  L         + I  CD   +  L  YT +V  + + G+   A  ++  +
Sbjct: 558 -SGC--SNAGLIDQGQDCFESMI--CDHGIEPCLEHYTCMVRLFGRSGQLDKAMNLIEGI 612

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
             E +V+   +M+S  M+Q      EE  R++ E+
Sbjct: 613 PYEPSVMIWRAMLSASMNQ----YNEEFARRSAEE 643


>gi|242032375|ref|XP_002463582.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
 gi|241917436|gb|EER90580.1| hypothetical protein SORBIDRAFT_01g002460 [Sorghum bicolor]
          Length = 610

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 141/391 (36%), Positives = 226/391 (57%), Gaps = 12/391 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++HA   + G+    N+S  +L  + KCGA++ A  +FD +P R   ++N MI GY +NG
Sbjct: 183 EVHAFALRAGLDELVNVSTAVLDAYCKCGAVEAARAVFDWMPVRNSVSWNAMIDGYAENG 242

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
              E+L+L  ++V  G      T + +L A   CR    L  +  R VH  +++  +K++
Sbjct: 243 NASEALALFWRMVQEGV---DVTDAAVLAALQACRELGCL--DEARRVHELLVRVGLKSN 297

Query: 186 DVLYTALVDSYVKGGKTSYARIVF-DMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK-- 242
             +  AL+ +Y K  +   A   F ++ ++K  I   +MI GF   G  EDAE +F +  
Sbjct: 298 VSVMNALITTYSKCKRADLAAHAFNELGIKKTRISWNAMILGFTQNGCSEDAERLFARMQ 357

Query: 243 --TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
              V+ D     ++I   +  I    +A  +H   I++   +D+ + +AL+DMY+KCG++
Sbjct: 358 LENVKPDSFTLVSVIPAVA-DISDPLQARWIHGYSIRHQLDQDIYVLTALIDMYSKCGRV 416

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
             AR++FD  + ++V TW +MI GYG +G    A+ELF  M+     PN  TFL  L+AC
Sbjct: 417 TIARKLFDSARDRHVITWNAMIHGYGSHGFGQVAVELFEEMKGTGSLPNETTFLSVLAAC 476

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            HAGLVD+GR+ F SM +DY ++P MEHY  +VDLLGRAG +++A  F+  MP +P   V
Sbjct: 477 SHAGLVDEGRKYFASM-KDYGLEPGMEHYGTLVDLLGRAGKVDEAWSFIQNMPIEPGISV 535

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNAND 451
           + A+L +C+LH +VE+A  +A +IF+L   +
Sbjct: 536 YGAMLGACKLHKNVELAEESAQKIFELGPEE 566



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 89/307 (28%), Positives = 151/307 (49%), Gaps = 21/307 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +HA +T  G+   +  +  L  ++ KC     A ++FD +P R   A+N ++AGY +
Sbjct: 78  GRAVHAQLTARGLASESLAATALANMYFKCRRPVDARRVFDRMPARDRVAWNALVAGYAR 137

Query: 124 NGQVEESLSLVRKLVS--SGERPDGYTFSMILKASTCCRSNVPLPRNLG--RMVHAQILK 179
           NG    ++  V ++     GE+PD  T   +L A  C  + V     LG  R VHA  L+
Sbjct: 138 NGLPALAMEAVVRMQGEEGGEQPDSITLVSVLPA--CADARV-----LGACREVHAFALR 190

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
             +     + TA++D+Y K G    AR VFD M  +N +   +MI G+   G   +A  +
Sbjct: 191 AGLDELVNVSTAVLDAYCKCGAVEAARAVFDWMPVRNSVSWNAMIDGYAENGNASEALAL 250

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETAR------KALEVHCQLIKNVFFEDVKLGSALVDM 293
           F + V++ + V +A +     +++  R      +A  VH  L++     +V + +AL+  
Sbjct: 251 FWRMVQEGVDVTDAAVLA---ALQACRELGCLDEARRVHELLVRVGLKSNVSVMNALITT 307

Query: 294 YAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           Y+KC + D A   F+ +  +K   +W +MI G+ +NG    A  LF  MQ   V+P+  T
Sbjct: 308 YSKCKRADLAAHAFNELGIKKTRISWNAMILGFTQNGCSEDAERLFARMQLENVKPDSFT 367

Query: 353 FLGALSA 359
            +  + A
Sbjct: 368 LVSVIPA 374



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 12/161 (7%)

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           VH QL       +    +AL +MY KC +  DARRVFD M  ++   W +++ GY +NG 
Sbjct: 81  VHAQLTARGLASESLAATALANMYFKCRRPVDARRVFDRMPARDRVAWNALVAGYARNGL 140

Query: 331 PNQALELFCMMQ--ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
           P  A+E    MQ  E   QP+ +T +  L AC  A ++   RE+       ++++  ++ 
Sbjct: 141 PALAMEAVVRMQGEEGGEQPDSITLVSVLPACADARVLGACREVHA-----FALRAGLDE 195

Query: 389 Y----ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
                  ++D   + G++E A      MP + NS  W A++
Sbjct: 196 LVNVSTAVLDAYCKCGAVEAARAVFDWMPVR-NSVSWNAMI 235



 Score = 52.0 bits (123), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 86/200 (43%), Gaps = 6/200 (3%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +L S +    +   P     IH +  +  +  +  +   L+ ++ KCG +  A ++FD  
Sbjct: 367 TLVSVIPAVADISDPLQARWIHGYSIRHQLDQDIYVLTALIDMYSKCGRVTIARKLFDSA 426

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
             R +  +N MI GY  +G  + ++ L  ++  +G  P+  TF  +L A  C  + +   
Sbjct: 427 RDRHVITWNAMIHGYGSHGFGQVAVELFEEMKGTGSLPNETTFLSVLAA--CSHAGLV-- 482

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMIS 225
            + GR   A +    ++     Y  LVD   + GK   A   + +M +E  +    +M+ 
Sbjct: 483 -DEGRKYFASMKDYGLEPGMEHYGTLVDLLGRAGKVDEAWSFIQNMPIEPGISVYGAMLG 541

Query: 226 GFMSQGFVEDAEEIFRKTVE 245
                  VE AEE  +K  E
Sbjct: 542 ACKLHKNVELAEESAQKIFE 561


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 155/484 (32%), Positives = 254/484 (52%), Gaps = 54/484 (11%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H +  ++G+  +  +   ++ ++ KCG ++ A ++F+ +  + + ++N M+ GY +
Sbjct: 250 GKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQ 309

Query: 124 NGQVEESLSLVRKL--------------VSSGERPDGYTFSM--ILKASTCCRS--NVPL 165
            G+ +++L L  K+              V +G    G  F    + +    C S  NV  
Sbjct: 310 IGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVT 369

Query: 166 PRNL-------GRMVHAQILKC------------DVKADDVLYTALVDSYVKGGKTSYAR 206
             +L       G ++H +   C            D   D ++  AL+D Y K      AR
Sbjct: 370 LVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAAR 429

Query: 207 IVFDMMLEKN--VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS--- 261
            +FD++  K+  V+  T +I G    G   +A E+F + ++ D  V   M   ++IS   
Sbjct: 430 AMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFV---MPNAFTISCAL 486

Query: 262 -----IETARKALEVHCQLIKNVFFEDVKL--GSALVDMYAKCGKIDDARRVFDHMQQKN 314
                +   R   ++H  +++N F E   L   + L+DMY+K G +D AR VFD+M Q+N
Sbjct: 487 MACARLGALRFGRQIHAYVLRNRF-ESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRN 545

Query: 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374
             +WTS++ GYG +G   +AL++F  MQ+  + P+ VTF+  L AC H+G+VD+G   F 
Sbjct: 546 GVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFN 605

Query: 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDV 434
            M +D+ + P  EHYACMVDLL RAG L++A++ +  MP KP   VW ALLS+CR++ +V
Sbjct: 606 GMNKDFGVVPGAEHYACMVDLLSRAGRLDEAMELIRGMPMKPTPAVWVALLSACRVYANV 665

Query: 435 EMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVG 494
           E+   AAN++ +L + +  G+Y  LSN  A A  W  V  +R  MK  G+ K  GCSWV 
Sbjct: 666 ELGEYAANQLLELESGN-DGSYTLLSNIYANARCWKDVARIRYLMKNTGIKKRPGCSWVQ 724

Query: 495 TESG 498
              G
Sbjct: 725 GRKG 728



 Score =  152 bits (384), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 116/427 (27%), Positives = 200/427 (46%), Gaps = 59/427 (13%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQR---TLSAYNYMIAG 120
           G  +HA +  +G + N  +   L+ ++ +CGA + A Q+FDE+ +R    L ++N ++A 
Sbjct: 145 GASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAA 204

Query: 121 YLKNGQVEESLSLVRKLVSS-GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           Y++ G    ++ +  ++    G RPD  +   +L A   C S     R  G+ VH   L+
Sbjct: 205 YMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPA---CASVGAWSR--GKQVHGYALR 259

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
             +  D  +  A+VD Y K G    A  VF+ M  K+V+   +M++G+   G  +DA  +
Sbjct: 260 SGLFEDVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGL 319

Query: 240 FRKT----VEKDIVVYNAMIEGYS---ISIE----------------------------- 263
           F K     +E ++V ++A+I GY+   +  E                             
Sbjct: 320 FEKIREEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCAL 379

Query: 264 --TARKALEVHCQLIKNVF-------FEDVKLGSALVDMYAKCGKIDDARRVFDHM--QQ 312
             T     E HC  IK +         +D+ + +AL+DMY+KC     AR +FD +  + 
Sbjct: 380 AGTLLHGKETHCHAIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKD 439

Query: 313 KNVFTWTSMIDGYGKNGNPNQALELFCMM--QECCVQPNYVTFLGALSACGHAGLVDKGR 370
           ++V TWT +I G  ++G  N+ALELF  M   +  V PN  T   AL AC   G +  GR
Sbjct: 440 RSVVTWTVLIGGNAQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGR 499

Query: 371 EIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRL 430
           +I   + R+      +    C++D+  ++G ++ A + V +   + N   W +L++   +
Sbjct: 500 QIHAYVLRNRFESAMLFVANCLIDMYSKSGDVDAA-RVVFDNMHQRNGVSWTSLMTGYGM 558

Query: 431 HDDVEMA 437
           H   E A
Sbjct: 559 HGRGEEA 565



 Score =  129 bits (325), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 163/326 (50%), Gaps = 21/326 (6%)

Query: 110 TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL 169
           T+  +N +I   +  G +E+ L L R++   G RPD YTF  +LKA       +P  R  
Sbjct: 90  TVFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKAC----GEIPSFR-C 144

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV---ICSTSMISG 226
           G  VHA +     + +  +   LV  Y + G    AR VFD M E+ V   +   S+++ 
Sbjct: 145 GASVHAVVFASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAA 204

Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAM----IEGYSISIETARKALEVHCQLIKNVFFE 282
           +M  G    A ++F +  E   +  +A+    +     S+    +  +VH   +++  FE
Sbjct: 205 YMQGGDSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFE 264

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           DV +G+A+VDMYAKCG +++A +VF+ M+ K+V +W +M+ GY + G  + AL LF  ++
Sbjct: 265 DVFVGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIR 324

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
           E  ++ N VT+   ++     GL  +  ++F  M R    +P +     ++     AG+L
Sbjct: 325 EEKIELNVVTWSAVIAGYAQRGLGFEALDVFRQM-RLCGSEPNVVTLVSLLSGCALAGTL 383

Query: 403 E-------QALKFVLEMPEK-PNSDV 420
                    A+K++L + E  P  D+
Sbjct: 384 LHGKETHCHAIKWILNLDENDPGDDL 409


>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Glycine max]
          Length = 887

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 136/438 (31%), Positives = 235/438 (53%), Gaps = 12/438 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H ++ K  +  + +++  L+ ++ +C +  YA  +F+ +  + + A+N +I G+ K
Sbjct: 448 GKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTK 507

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G    +L +  +L  SG +PD  T   +L A             LG   H  I+K  ++
Sbjct: 508 CGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDD-----LYLGICFHGNIIKNGIE 562

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLE-KNVICSTSMISGFMSQGFVEDAEEIFRK 242
           ++  +  AL+D Y K G    A  +F +    K+ +    MI+G++  G   +A   F +
Sbjct: 563 SEMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQ 622

Query: 243 ----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
               +V  ++V +  ++   S  +   R+A+  H  +I+  F     +G++L+DMYAK G
Sbjct: 623 MKLESVRPNLVTFVTILPAVSY-LSILREAMAFHACIIRMGFISSTLIGNSLIDMYAKSG 681

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
           ++  + + F  M+ K   +W +M+ GY  +G    AL LF +MQE  V  + V+++  LS
Sbjct: 682 QLSYSEKCFHEMENKGTISWNAMLSGYAMHGQGEVALALFSLMQETHVPVDSVSYISVLS 741

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC HAGL+ +GR IF+SM   ++++P MEHYACMVDLLG AG  ++ L  + +MP +P++
Sbjct: 742 ACRHAGLIQEGRNIFQSMTEKHNLEPSMEHYACMVDLLGCAGLFDEVLCLIDKMPTEPDA 801

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            VW ALL +C++H +V++  IA + + KL   +    Y+ LS+  A  G+W      R  
Sbjct: 802 QVWGALLGACKMHSNVKLGEIALHHLLKLEPRNAV-HYIVLSDIYAQCGRWIDARRTRSN 860

Query: 479 MKLRGVLKDTGCSWVGTE 496
           M   G+ K+ G SWVG  
Sbjct: 861 MTDHGLKKNPGYSWVGAH 878



 Score =  136 bits (342), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 188/380 (49%), Gaps = 15/380 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H +  + G+  +  ++  ++ ++ KCG LK A + F  L  R L  ++  ++  ++
Sbjct: 347 GKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSALVQ 406

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G   E+LS+ +++   G +PD    S ++ A     S+      LG+M+H  ++K D+ 
Sbjct: 407 AGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSS-----RLGKMMHCYVIKADMG 461

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +D  + T LV  Y +     YA  +F+ M  K+V+   ++I+GF   G    A E+F + 
Sbjct: 462 SDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRL 521

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               V+ D     +++   ++ ++     +  H  +IKN    ++ +  AL+DMYAKCG 
Sbjct: 522 QLSGVQPDSGTMVSLLSACAL-LDDLYLGICFHGNIIKNGIESEMHVKVALIDMYAKCGS 580

Query: 300 IDDARRVFDHMQQ--KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           +  A  +F H+ +  K+  +W  MI GY  NG  N+A+  F  M+   V+PN VTF+  L
Sbjct: 581 LCTAENLF-HLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTIL 639

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            A  +  ++ +       + R   +   +   + ++D+  ++G L  + K   EM E   
Sbjct: 640 PAVSYLSILREAMAFHACIIRMGFISSTLIGNS-LIDMYAKSGQLSYSEKCFHEM-ENKG 697

Query: 418 SDVWAALLSSCRLHDDVEMA 437
           +  W A+LS   +H   E+A
Sbjct: 698 TISWNAMLSGYAMHGQGEVA 717



 Score =  122 bits (306), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/348 (25%), Positives = 172/348 (49%), Gaps = 29/348 (8%)

Query: 67  IHAHITKT---GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           IH ++ +    GV  N+     L+ ++ KCG +K A Q+FD++  +   ++  M+AGY+ 
Sbjct: 251 IHGYVVRRCVFGVVSNS-----LIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVH 305

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G   E L L+ ++     + +  +    + A+T  R         G+ VH   L+  + 
Sbjct: 306 HGCYFEVLQLLDEMKRKHIKMNKISVVNSVLAATETRD-----LEKGKEVHNYALQLGMT 360

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +D V+ T +V  Y K G+   A+  F  +  ++++  ++ +S  +  G+  +A  IF++ 
Sbjct: 361 SDIVVATPIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEM 420

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               ++ D  + ++++   +  I ++R    +HC +IK     D+ + + LV MY +C  
Sbjct: 421 QHEGLKPDKTILSSLVSACA-EISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRCKS 479

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
              A  +F+ M  K+V  W ++I+G+ K G+P  ALE+F  +Q   VQP+  T +  LSA
Sbjct: 480 FMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSA 539

Query: 360 CG-----HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
           C      + G+   G  I   +E +  +K        ++D+  + GSL
Sbjct: 540 CALLDDLYLGICFHGNIIKNGIESEMHVK------VALIDMYAKCGSL 581



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/323 (27%), Positives = 157/323 (48%), Gaps = 15/323 (4%)

Query: 110 TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL 169
           +L  +N +I  Y +    +E++   + +   G  PD YTF+ +LKA T       L  + 
Sbjct: 91  SLILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTG-----ALDFHE 145

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           G  +H  I   +++ D  + T LVD Y K G    AR VFD M  K+V    +MISG   
Sbjct: 146 GVAIHQDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQ 205

Query: 230 QGFVEDAEEIFRKT-----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDV 284
                +A EIF++      VE D V    +    S  +E       +H  +++   F  V
Sbjct: 206 SSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVS-RLEDVDSCKSIHGYVVRRCVFGVV 264

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
              ++L+DMY+KCG++  A ++FD M  K+  +W +M+ GY  +G   + L+L   M+  
Sbjct: 265 S--NSLIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRK 322

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQ 404
            ++ N ++ + ++ A      ++KG+E+  +      M   +     +V +  + G L++
Sbjct: 323 HIKMNKISVVNSVLAATETRDLEKGKEV-HNYALQLGMTSDIVVATPIVSMYAKCGELKK 381

Query: 405 ALKFVLEMPEKPNSDVWAALLSS 427
           A +F L + E  +  VW+A LS+
Sbjct: 382 AKEFFLSL-EGRDLVVWSAFLSA 403



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 101/449 (22%), Positives = 196/449 (43%), Gaps = 60/449 (13%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+ IH  I    ++ +  I   L+ ++ K G L  A ++FD++P + ++++N MI+G  +
Sbjct: 146 GVAIHQDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQ 205

Query: 124 NGQVEESLSLVRKL-VSSGERPDGYTFSMILKAST------CCRSNVPLPRNLGRMVHAQ 176
           +    E+L + +++ +  G  PD  +   +  A +       C+S           +H  
Sbjct: 206 SSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKS-----------IHGY 254

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG----F 232
           +++  V    V+  +L+D Y K G+   A  +FD M  K+ I   +M++G++  G     
Sbjct: 255 VVRRCVFG--VVSNSLIDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEV 312

Query: 233 VEDAEEIFRKTVEKD-IVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALV 291
           ++  +E+ RK ++ + I V N+++   +       K  EVH   ++     D+ + + +V
Sbjct: 313 LQLLDEMKRKHIKMNKISVVNSVLA--ATETRDLEKGKEVHNYALQLGMTSDIVVATPIV 370

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
            MYAKCG++  A+  F  ++ +++  W++ +    + G P +AL +F  MQ   ++P+  
Sbjct: 371 SMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKT 430

Query: 352 TFLGALSACGHAGLVDKGRE-----IFESMERDYSMKPKM-------------------E 387
                +SAC        G+      I   M  D S+   +                    
Sbjct: 431 ILSSLVSACAEISSSRLGKMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRM 490

Query: 388 HYA------CMVDLLGRAGSLEQALKFVLEMP---EKPNSDVWAALLSSCRLHDDVEMAN 438
           HY        +++   + G    AL+  L +     +P+S    +LLS+C L DD+ +  
Sbjct: 491 HYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGI 550

Query: 439 IAANEIFKLNANDRPGAYVALSNTLAAAG 467
                I K          VAL +  A  G
Sbjct: 551 CFHGNIIKNGIESEMHVKVALIDMYAKCG 579



 Score = 85.1 bits (209), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 147/355 (41%), Gaps = 62/355 (17%)

Query: 59  DTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF-------DELPQRTL 111
           D  + G+  H +I K G++   ++ + L+ ++ KCG+L  A  +F       DE+     
Sbjct: 544 DDLYLGICFHGNIIKNGIESEMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEV----- 598

Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR 171
            ++N MIAGYL NG   E++S   ++     RP+  TF  IL A     S + + R    
Sbjct: 599 -SWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAV----SYLSILRE-AM 652

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
             HA I++    +  ++  +L+D Y K G+ SY+   F  M  K  I   +M+SG+   G
Sbjct: 653 AFHACIIRMGFISSTLIGNSLIDMYAKSGQLSYSEKCFHEMENKGTISWNAMLSGYAMHG 712

Query: 232 FVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALV 291
             E A  +F    E  + V +     Y   +   R A                       
Sbjct: 713 QGEVALALFSLMQETHVPVDSV---SYISVLSACRHA----------------------- 746

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFT-----WTSMIDGYGKNGNPNQALELFCMMQECCV 346
                 G I + R +F  M +K+        +  M+D  G  G  +   E+ C++ +   
Sbjct: 747 ------GLIQEGRNIFQSMTEKHNLEPSMEHYACMVDLLGCAGLFD---EVLCLIDKMPT 797

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK-MEHYACMVDLLGRAG 400
           +P+   +   L AC     V  G EI  ++     ++P+   HY  + D+  + G
Sbjct: 798 EPDAQVWGALLGACKMHSNVKLG-EI--ALHHLLKLEPRNAVHYIVLSDIYAQCG 849



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 60/205 (29%), Positives = 100/205 (48%), Gaps = 26/205 (12%)

Query: 256 EGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
           EG +I  + A + LE            DV +G+ LVDMY K G +D+AR+VFD M  K+V
Sbjct: 145 EGVAIHQDIASRELEC-----------DVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDV 193

Query: 316 FTWTSMIDGYGKNGNPNQALELFCMMQ-ECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374
            +W +MI G  ++ NP +ALE+F  MQ E  V+P+ V+ L    A      VD  + I  
Sbjct: 194 ASWNAMISGLSQSSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHG 253

Query: 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS------- 427
            + R             ++D+  + G ++ A +   +M  K +   WA +++        
Sbjct: 254 YVVRRCVFGVVSN---SLIDMYSKCGEVKLAHQIFDQMWVKDDIS-WATMMAGYVHHGCY 309

Query: 428 ---CRLHDDVEMANIAANEIFKLNA 449
               +L D+++  +I  N+I  +N+
Sbjct: 310 FEVLQLLDEMKRKHIKMNKISVVNS 334


>gi|224125332|ref|XP_002329779.1| predicted protein [Populus trichocarpa]
 gi|222870841|gb|EEF07972.1| predicted protein [Populus trichocarpa]
          Length = 585

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 149/434 (34%), Positives = 233/434 (53%), Gaps = 13/434 (2%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++HAHI  +G   + ++  KLL L    G++ Y  Q+F  +P      +  +I    K+ 
Sbjct: 30  QVHAHIIVSGYGRSRSLLTKLLNLACAAGSISYTRQIFLAVPNPDSFLFTSLIKSTSKSH 89

Query: 126 QVE-ESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
                SL    ++V S   P  YTF+ ++K+   C     L    GR+VH  +L      
Sbjct: 90  NFSIYSLYFYSRMVLSNVSPSNYTFTSVIKS---CADLSALKH--GRVVHGHVLVHGFGL 144

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT- 243
           D  +  ALV  Y K G    AR VFD + E++++   SMISG+   GF ++A  +F +  
Sbjct: 145 DVYVQAALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMK 204

Query: 244 ---VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
              VE D   + +++   +  +        VH  ++ N    +V LG++L++MY +CG +
Sbjct: 205 ETGVEPDSATFVSVLSACA-HLGAFSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNV 263

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
             AR VFD M+++NV  WT+MI GYG NG  +QA+ELF  M+   + PN +TF+  LSAC
Sbjct: 264 SKAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFHEMRRNGLFPNSITFVAVLSAC 323

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL-EMPEKPNSD 419
            HAGLV++GR +F S+  +Y + P +EH  C+VD+LGRAG L++A  F+  E+PE P   
Sbjct: 324 AHAGLVNEGRRLFASIREEYHLVPGVEHNVCLVDMLGRAGLLDEAYNFIKEEIPENPAPA 383

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +  A+L +C++H + ++    A  +      + P  YV LSN  A AG+ D V  +R  M
Sbjct: 384 ILTAMLGACKMHKNFDLGAQVAEHLLAAEP-ENPAHYVILSNIYALAGRMDQVEIVRNNM 442

Query: 480 KLRGVLKDTGCSWV 493
             + + K  G S V
Sbjct: 443 IRKCLKKQVGYSTV 456



 Score =  117 bits (294), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 170/386 (44%), Gaps = 65/386 (16%)

Query: 24  PPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNIS 83
           P N TF   +++   LS          AL+H         G  +H H+   G   +  + 
Sbjct: 109 PSNYTFTSVIKSCADLS----------ALKH---------GRVVHGHVLVHGFGLDVYVQ 149

Query: 84  IKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGER 143
             L+ L+ KCG L  A ++FD++ +R++ A+N MI+GY +NG  +E++ L  ++  +G  
Sbjct: 150 AALVALYGKCGDLINARKVFDKIRERSIVAWNSMISGYEQNGFAKEAIGLFDRMKETGVE 209

Query: 144 PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTS 203
           PD  TF  +L  S C         +LG  VH  I+   +  + VL T+L++ Y++ G  S
Sbjct: 210 PDSATFVSVL--SACAHLGA---FSLGCWVHEYIVGNGLDLNVVLGTSLINMYIRCGNVS 264

Query: 204 YARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIE 263
            AR VFD M E+NV+  T+MISG+ + G+   A E+F                       
Sbjct: 265 KAREVFDSMKERNVVAWTAMISGYGTNGYGSQAVELFH---------------------- 302

Query: 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-----NVFTW 318
                     ++ +N  F +     A++   A  G +++ RR+F  ++++      V   
Sbjct: 303 ----------EMRRNGLFPNSITFVAVLSACAHAGLVNEGRRLFASIREEYHLVPGVEHN 352

Query: 319 TSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER 378
             ++D  G+ G  ++A     + +E    P        L AC      D G ++ E +  
Sbjct: 353 VCLVDMLGRAGLLDEAYNF--IKEEIPENPAPAILTAMLGACKMHKNFDLGAQVAEHLLA 410

Query: 379 DYSMKPKMEHYACMVDLLGRAGSLEQ 404
                P   HY  + ++   AG ++Q
Sbjct: 411 AEPENPA--HYVILSNIYALAGRMDQ 434


>gi|297793453|ref|XP_002864611.1| hypothetical protein ARALYDRAFT_496037 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297310446|gb|EFH40870.1| hypothetical protein ARALYDRAFT_496037 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 534

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 148/460 (32%), Positives = 255/460 (55%), Gaps = 40/460 (8%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           IHA I +T    +  +  +L+ +     ++ YA  +F  +    +  Y  MI G++ +G+
Sbjct: 48  IHAKIIRTFHDQDAFVVFELIRVCSTLDSIDYAYDVFRYVSNPNVYLYTAMIDGFVSSGR 107

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTC--CRSNVPLPRNLGRMVHAQILKCDVKA 184
             + +SL  +++ S   PD Y  + +LKA     CR            +H+Q+LK    +
Sbjct: 108 SADGVSLYHRMIHSSVLPDNYVITSVLKACGLDECRE-----------IHSQVLKLGFGS 156

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
              +   L++ Y K G+ + A+ VFD M +++ + +T MI+ +   G +++A E+F+   
Sbjct: 157 SRSVGLKLMEIYGKSGELADAKKVFDEMPDRDQVVATVMINCYSECGCIKEALELFQDVK 216

Query: 245 EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFF-------------------EDVK 285
            KD V + AMI+G   + E   KALE+  ++  +VF+                   E+ K
Sbjct: 217 IKDTVCWTAMIDGLVRNREM-NKALELFREMQLSVFYLPARIWVRWSSGAGVHSFVENQK 275

Query: 286 L------GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
           +      G+AL++MY++CG I+ A+RVF  M+ K+V ++ +MI G   +G   +A+ +F 
Sbjct: 276 MELSNFVGNALINMYSRCGDINVAKRVFKGMRDKDVISYNTMISGLAMHGASVEAINVFR 335

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
            M     +PN VT +  L+AC H GL+D G E+F SM R +S++P++EHY C+VDLLGR 
Sbjct: 336 DMVNRGFRPNQVTLVALLNACSHGGLLDIGLEVFNSMWRVFSVEPQIEHYGCIVDLLGRV 395

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVAL 459
           G LE+A +F+  M  +P+  +  ALLS+C++H ++E+    A  +F+ + N   G YV L
Sbjct: 396 GRLEEAYRFIENMLIEPDHIMLGALLSACKIHGNMELGEKIAKRLFE-SENPDSGTYVLL 454

Query: 460 SNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           S+  A++GKW   TE+RE M+  G+ K+ GCS +  ++ +
Sbjct: 455 SHIYASSGKWKESTEIRESMRESGIEKEPGCSTIEVDNQI 494



 Score = 69.3 bits (168), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 68/270 (25%), Positives = 123/270 (45%), Gaps = 30/270 (11%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IH+ + K G   + ++ +KL+ ++ K G L  A ++FDE+P R       MI  Y + G
Sbjct: 144 EIHSQVLKLGFGSSRSVGLKLMEIYGKSGELADAKKVFDEMPDRDQVVATVMINCYSECG 203

Query: 126 QVEESLSL-----VRKLVSSGERPDGYTFSMIL-KASTCCR----SNVPLPRNL------ 169
            ++E+L L     ++  V      DG   +  + KA    R    S   LP  +      
Sbjct: 204 CIKEALELFQDVKIKDTVCWTAMIDGLVRNREMNKALELFREMQLSVFYLPARIWVRWSS 263

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           G  VH+ +    ++  + +  AL++ Y + G  + A+ VF  M +K+VI   +MISG   
Sbjct: 264 GAGVHSFVENQKMELSNFVGNALINMYSRCGDINVAKRVFKGMRDKDVISYNTMISGLAM 323

Query: 230 QGFVEDAEEIFRKTVEKD--------IVVYNAMIEGYSISIETARKALEVHCQLIKNVFF 281
            G   +A  +FR  V +         + + NA   G  + I      LEV   + +    
Sbjct: 324 HGASVEAINVFRDMVNRGFRPNQVTLVALLNACSHGGLLDI-----GLEVFNSMWRVFSV 378

Query: 282 E-DVKLGSALVDMYAKCGKIDDARRVFDHM 310
           E  ++    +VD+  + G++++A R  ++M
Sbjct: 379 EPQIEHYGCIVDLLGRVGRLEEAYRFIENM 408



 Score = 52.4 bits (124), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 91/186 (48%), Gaps = 7/186 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H+ +    ++ +  +   L+ ++ +CG +  A ++F  +  + + +YN MI+G   
Sbjct: 264 GAGVHSFVENQKMELSNFVGNALINMYSRCGDINVAKRVFKGMRDKDVISYNTMISGLAM 323

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC-DV 182
           +G   E++++ R +V+ G RP+  T   +L A  C    +    ++G  V   + +   V
Sbjct: 324 HGASVEAINVFRDMVNRGFRPNQVTLVALLNA--CSHGGLL---DIGLEVFNSMWRVFSV 378

Query: 183 KADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +     Y  +VD   + G+   A R + +M++E + I   +++S     G +E  E+I +
Sbjct: 379 EPQIEHYGCIVDLLGRVGRLEEAYRFIENMLIEPDHIMLGALLSACKIHGNMELGEKIAK 438

Query: 242 KTVEKD 247
           +  E +
Sbjct: 439 RLFESE 444


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 157/492 (31%), Positives = 253/492 (51%), Gaps = 68/492 (13%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYM-------- 117
           +IH++  + G   +  +   L+  + KCG++  A ++F+ +  + + ++N M        
Sbjct: 280 EIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSG 339

Query: 118 ---------------------------IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFS 150
                                      IAGY + G  +E+L   ++++  G  P+  T  
Sbjct: 340 NFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTII 399

Query: 151 MILKASTCCRSNVPLPRNLGRMVHAQILK-CDVKADD-----------VLYTALVDSYVK 198
            +L A   C S   L +  G  +HA  LK C +  D+           ++Y AL+D Y K
Sbjct: 400 SLLSA---CASLGALSQ--GMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSK 454

Query: 199 GGKTSYARIVFDMM--LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE 256
                 AR +FD +   E+NV+  T MI G+   G   DA +IF + + K    Y     
Sbjct: 455 CRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKP---YAVAPN 511

Query: 257 GYSIS--------IETARKALEVHCQLIKNVFFEDVK--LGSALVDMYAKCGKIDDARRV 306
            Y+IS        +   R   ++H  + ++  +E     + + L+DMY+KCG +D AR V
Sbjct: 512 AYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNV 571

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           FD M ++N  +WTSM+ GYG +G   +AL++F  MQ+    P+ ++FL  L AC H+G+V
Sbjct: 572 FDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMV 631

Query: 367 DKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           D+G   F+ M RDY +    EHYAC++DLL R G L++A K + EMP +P++ +W ALLS
Sbjct: 632 DQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLS 691

Query: 427 SCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLK 486
           +CR+H +VE+A  A N++  + A +  G+Y  +SN  A A +W  V  +R+ MK  G+ K
Sbjct: 692 ACRVHSNVELAEYALNKLVNMKA-ENDGSYTLISNIYANARRWKDVARIRQLMKKSGIKK 750

Query: 487 DTGCSWVGTESG 498
             GCSWV  + G
Sbjct: 751 RPGCSWVQGKKG 762



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 116/451 (25%), Positives = 213/451 (47%), Gaps = 74/451 (16%)

Query: 47  SLPSALQHYINSDTPFY--GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           +LP AL+     + P Y  G  +H  I   G + N  +   L+ ++ +CG+L+ A  +FD
Sbjct: 151 TLPYALK--ACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFD 208

Query: 105 ELPQRTLS---AYNYMIAGYLKNGQVEESLSLVRKLV------SSGERPDGYTFSMILKA 155
           E+ ++ +    ++N ++A ++K      +L L  ++       ++ ER D  +   IL A
Sbjct: 209 EITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPA 268

Query: 156 STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
              C S   LP+   + +H+  ++    AD  +  AL+D+Y K G  + A  VF++M  K
Sbjct: 269 ---CASLKALPQI--KEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFK 323

Query: 216 NVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYS------------ 259
           +V+   +M++G+   G    A E+F    ++ +  D++ ++A+I GY+            
Sbjct: 324 DVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAF 383

Query: 260 ---------------ISIETA-------RKALEVHCQLIKNVFFE------------DVK 285
                          IS+ +A        + +E+H   +K                 D+ 
Sbjct: 384 QQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLM 443

Query: 286 LGSALVDMYAKCGKIDDARRVFDHM--QQKNVFTWTSMIDGYGKNGNPNQALELFCMM-- 341
           + +AL+DMY+KC     AR +FD +  +++NV TWT MI GY + G+ N AL++F  M  
Sbjct: 444 VYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMIS 503

Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA-CMVDLLGRAG 400
           +   V PN  T    L AC H   +  G++I   + R +  +P +   A C++D+  + G
Sbjct: 504 KPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCG 563

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
            ++ A      MP++ N   W +++S   +H
Sbjct: 564 DVDTARNVFDSMPKR-NEVSWTSMMSGYGMH 593



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 85/336 (25%), Positives = 159/336 (47%), Gaps = 28/336 (8%)

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149
           +L CGA K A  + + +       +N ++  ++K G ++ ++ +  +++ +G +PD +T 
Sbjct: 93  YLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDHFTL 152

Query: 150 SMILKA-----STCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSY 204
              LKA     S CC          GR +H  I     +++  +  ALV  Y + G    
Sbjct: 153 PYALKACGELPSYCC----------GRALHGLICCNGFESNVFVCNALVAMYSRCGSLED 202

Query: 205 ARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIF---------RKTVEKDIVVYN 252
           A +VFD +  K   +VI   S+++  +       A E+F         + T E+  ++  
Sbjct: 203 ASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISI 262

Query: 253 AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ 312
             I     S++   +  E+H   I+N  F D  + +AL+D YAKCG ++DA +VF+ M+ 
Sbjct: 263 VNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEF 322

Query: 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           K+V +W +M+ GY ++GN   A ELF  M++  +  + +T+   ++     G   +  + 
Sbjct: 323 KDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDA 382

Query: 373 FESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKF 408
           F+ M  D S +P       ++      G+L Q ++ 
Sbjct: 383 FQQMILDGS-EPNSVTIISLLSACASLGALSQGMEI 417



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 93/186 (50%), Gaps = 11/186 (5%)

Query: 64  GLKIHAHITKTG-VKPNTNISIKLLI-LHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           G +IHA++T+    +P+       LI ++ KCG +  A  +FD +P+R   ++  M++GY
Sbjct: 531 GKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGY 590

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK-- 179
             +G+ +E+L +  K+  +G  PD  +F ++L A   C  +  + + L    +  I++  
Sbjct: 591 GMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYA---CSHSGMVDQGLN---YFDIMRRD 644

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
            DV A    Y  ++D   + G+   A + + +M +E + +   +++S       VE AE 
Sbjct: 645 YDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSACRVHSNVELAEY 704

Query: 239 IFRKTV 244
              K V
Sbjct: 705 ALNKLV 710



 Score = 48.5 bits (114), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 23/154 (14%)

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           LG+ +V  Y  CG   DA  V + +       W  ++  + K G+ ++A+ + C M    
Sbjct: 85  LGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAG 144

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREI--------FESMERDYSMKPKMEHYAC--MVDL 395
            +P++ T   AL ACG       GR +        FES             + C  +V +
Sbjct: 145 TKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFES-----------NVFVCNALVAM 193

Query: 396 LGRAGSLEQALKFVLEMPEKPNSDV--WAALLSS 427
             R GSLE A     E+  K   DV  W +++++
Sbjct: 194 YSRCGSLEDASLVFDEITRKGIDDVISWNSIVAA 227


>gi|357453191|ref|XP_003596872.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240903|gb|ABD32761.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355485920|gb|AES67123.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 517

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 146/426 (34%), Positives = 231/426 (54%), Gaps = 46/426 (10%)

Query: 113 AYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRM 172
           ++   I+ + KN    ++ S   +++ +   P+  T   +L  S C  S        G  
Sbjct: 54  SWTSSISHHCKNNNFLKAASEFIQMLEAEVEPNHITLITLL--SACAHSPSKTSITFGAA 111

Query: 173 VHAQILKCDVKADDVLY-TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
           +H    K     +DV+  TAL+D Y K GK  YAR+VFD M  +N++   +MI G+M  G
Sbjct: 112 LHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYARLVFDQMGVRNLVSWNTMIDGYMKNG 171

Query: 232 FVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE--------------------- 270
            V+DA ++F K   K++V +  +I G+ +  E   +ALE                     
Sbjct: 172 DVDDALKLFDKLPVKNVVSWTVVIGGF-VKKECYEEALECFREMQLAGVVPDFVTVIAII 230

Query: 271 --------------VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF 316
                         VH  ++K  F ++VK+ ++L+DMYA+CG I+ AR+VFD M Q+N+ 
Sbjct: 231 SACANLGALGLGLWVHRLVMKKEFRDNVKVLNSLIDMYARCGCIELARQVFDGMSQRNLV 290

Query: 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM 376
           +W S+I G+  NG  ++AL  F  M++  ++PN V++  AL+AC HAGL+D+G +IF  +
Sbjct: 291 SWNSIIVGFAVNGLADKALSFFRSMKKEGLEPNGVSYTSALTACSHAGLIDEGLKIFADI 350

Query: 377 ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEM 436
           +RD+   P++EHY C+VDL  RAG L++A   + +MP  PN  V  +LL++CR   DVE+
Sbjct: 351 KRDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKMPMMPNEVVLGSLLAACRTQGDVEL 410

Query: 437 ANIAANEIFKLNANDRPGA---YVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
               A ++ K      PG    YV  SN  AA GKWD  +++R +MK RG+ K+   S +
Sbjct: 411 ----AEKVMKYQVELYPGGDSNYVLFSNIYAAVGKWDGASKVRREMKERGLQKNLAFSSI 466

Query: 494 GTESGL 499
             +SG+
Sbjct: 467 EIDSGI 472



 Score = 92.0 bits (227), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 94/413 (22%), Positives = 165/413 (39%), Gaps = 81/413 (19%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPN-TNISIKLLILHLKCGALKYA 99
           N +T  +L SA  H  +  +  +G  +H H  K G   N   +   L+ ++ KCG L YA
Sbjct: 86  NHITLITLLSACAHSPSKTSITFGAALHTHAFKHGFAMNDVMVGTALIDMYAKCGKLDYA 145

Query: 100 G-------------------------------QMFDELPQRTLSAYNYMIAGYLKNGQVE 128
                                           ++FD+LP + + ++  +I G++K    E
Sbjct: 146 RLVFDQMGVRNLVSWNTMIDGYMKNGDVDDALKLFDKLPVKNVVSWTVVIGGFVKKECYE 205

Query: 129 ESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVL 188
           E+L   R++  +G  PD  T   I+ A   C +   L   LG  VH  ++K + + +  +
Sbjct: 206 EALECFREMQLAGVVPDFVTVIAIISA---CANLGAL--GLGLWVHRLVMKKEFRDNVKV 260

Query: 189 YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI 248
             +L+D Y + G    AR VFD M ++N++   S+I GF   G  + A   FR   ++  
Sbjct: 261 LNSLIDMYARCGCIELARQVFDGMSQRNLVSWNSIIVGFAVNGLADKALSFFRSMKKEG- 319

Query: 249 VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVF- 307
                 +E   +S  +A  A                          +  G ID+  ++F 
Sbjct: 320 ------LEPNGVSYTSALTAC-------------------------SHAGLIDEGLKIFA 348

Query: 308 ----DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
               DH     +  +  ++D Y + G   +A ++   M    + PN V     L+AC   
Sbjct: 349 DIKRDHRNSPRIEHYGCLVDLYSRAGRLKEAWDVIKKMP---MMPNEVVLGSLLAACRTQ 405

Query: 364 GLVDKGREIFESMERDYSMKPKME-HYACMVDLLGRAGSLEQALKFVLEMPEK 415
           G V+   ++   M+    + P  + +Y    ++    G  + A K   EM E+
Sbjct: 406 GDVELAEKV---MKYQVELYPGGDSNYVLFSNIYAAVGKWDGASKVRREMKER 455


>gi|225440783|ref|XP_002275884.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g37570 [Vitis vinifera]
          Length = 561

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 152/476 (31%), Positives = 252/476 (52%), Gaps = 41/476 (8%)

Query: 32  KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHL 91
           +++  D++ +  T  SL  A            G+  H    + GV  +  +   L+ L+ 
Sbjct: 113 RMKRSDAVPDKFTYPSLIKACSKVCGVKE---GVAFHGSAVRCGVGGDVFVMTSLIDLYG 169

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           KCG +  A ++FDE+ +R + ++  MIAGY     + E+    RKL       +  +++ 
Sbjct: 170 KCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEA----RKLFDEMPEKNAVSWNA 225

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           I+     C       +    M H  +         V +T ++D Y K G  + AR VF+ 
Sbjct: 226 IISGYVKCGDLRSARKMFDEMPHRNV---------VSFTTMIDGYAKSGDMASARFVFEE 276

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSI--SIETA 265
             E++V+  +++ISG++  G   +A +IF     + V+ D  +  +++   S   S+E A
Sbjct: 277 APERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSACSQMGSLELA 336

Query: 266 R--------KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT 317
           +         +++VH             + +AL+DM AKCG +D A ++F+ M ++++ +
Sbjct: 337 KWVDDYVRKSSIDVH----------RAHVIAALIDMNAKCGSMDRATKLFEEMPKRDLIS 386

Query: 318 WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377
           + SM+ G   +G   QA+ LF  M    + P+ V F   L+AC  AGLVD+G   FESM+
Sbjct: 387 YCSMMQGLSIHGCGPQAVSLFSRMLNEGLTPDDVAFTVILTACSRAGLVDEGCYYFESMK 446

Query: 378 RDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
            DYS+ P  +HYACMVDLLGRAG L++A + +  MP +P++  W ALL +C+LH D+E+ 
Sbjct: 447 TDYSIVPSPDHYACMVDLLGRAGRLKEAYELLKSMPVEPHAGAWGALLGACKLHCDIELG 506

Query: 438 NIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            + A+++F+L   +  G YV LSN  AAA +W  V+ LR KM+ RG+ K  GCSW+
Sbjct: 507 EVVADQLFELEPQN-AGNYVLLSNIYAAAEQWLDVSLLRNKMRERGIRKIPGCSWI 561



 Score =  165 bits (417), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 115/409 (28%), Positives = 204/409 (49%), Gaps = 36/409 (8%)

Query: 15  THNRHYTLVPPNQTFP---PKLQNYD---SLSNPLTATSLPSALQHYINSDTPFYGLKIH 68
           T  R YT +    TFP   P L+++D   S+S  L A +  S L+            ++H
Sbjct: 2   TFIRRYTAL----TFPDYLPTLRSFDTTSSISTLLKACTTTSTLE------------QVH 45

Query: 69  AHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVE 128
           A I + G+  +  I  + L L        Y   +F+ +   +   +N  I GY +N  V 
Sbjct: 46  ARIIRKGLHQDHFIISQFLTLCNSLSNFSYTTSVFNGVSSPSTVLWNTYIKGYSENYSVS 105

Query: 129 ESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVL 188
            ++SL  ++  S   PD +T+  ++KA   C     +    G   H   ++C V  D  +
Sbjct: 106 LTVSLFIRMKRSDAVPDKFTYPSLIKA---CSKVCGVKE--GVAFHGSAVRCGVGGDVFV 160

Query: 189 YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI 248
            T+L+D Y K G+   AR VFD M E+NV+  T+MI+G+ S   + +A ++F +  EK+ 
Sbjct: 161 MTSLIDLYGKCGEILCARKVFDEMGERNVVSWTAMIAGYASFSDLVEARKLFDEMPEKNA 220

Query: 249 VVYNAMIEGY--SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRV 306
           V +NA+I GY     + +ARK       +   +   +V   + ++D YAK G +  AR V
Sbjct: 221 VSWNAIISGYVKCGDLRSARK-------MFDEMPHRNVVSFTTMIDGYAKSGDMASARFV 273

Query: 307 FDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366
           F+   +++V  W+++I GY +NG PN+A+++F  M    V+P+    +  +SAC   G +
Sbjct: 274 FEEAPERDVVAWSALISGYVQNGQPNEAVKIFLEMCSRNVKPDEFIMVSLMSACSQMGSL 333

Query: 367 DKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
           +  + + + + +      +    A ++D+  + GS+++A K   EMP++
Sbjct: 334 ELAKWVDDYVRKSSIDVHRAHVIAALIDMNAKCGSMDRATKLFEEMPKR 382


>gi|222629201|gb|EEE61333.1| hypothetical protein OsJ_15451 [Oryza sativa Japonica Group]
          Length = 1037

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 147/437 (33%), Positives = 240/437 (54%), Gaps = 14/437 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH    K G+  N  +   L+ L+ K G ++ + ++F ++   ++   N +IAG+++
Sbjct: 556 GKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQ 615

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N   +E++ L ++++  G +P   TFS IL  S C  S   L   +G+ VH   LK  V 
Sbjct: 616 NNNEDEAIQLFQQVLKDGLKPSSVTFSSIL--SGCSGS---LNSAIGKQVHCYTLKSGVL 670

Query: 184 ADDVLY-TALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
            DD L   +L   Y+K      A +++ +M   KN+   T++ISG+   G+ + +   F 
Sbjct: 671 YDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFW 730

Query: 242 K----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           +     V  D   + ++++  S  +       E+H  + K+ F       SAL+DMY+KC
Sbjct: 731 RMRHCNVRSDEATFASVLKACS-DVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKC 789

Query: 298 GKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           G +  +   F  ++ K ++  W SMI G+ KNG  ++AL LF  M+E  ++P+ VTFLG 
Sbjct: 790 GDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGV 849

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           L AC H+GL+ +GR  F SM + Y + P+++HYAC +DLLGR G L++A + + ++P +P
Sbjct: 850 LIACTHSGLISEGRHFFGSMRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRP 909

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
           +  VWA  L++CR+H D E   IAA ++ +L        YV LS+  AA G W      R
Sbjct: 910 DGVVWATYLAACRMHKDEERGKIAARKLVELEPQ-YSSTYVLLSSLHAATGNWAEAKVTR 968

Query: 477 EKMKLRGVLKDTGCSWV 493
           E M+ +GV K  GCSW+
Sbjct: 969 ESMREKGVAKFPGCSWI 985



 Score =  123 bits (308), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 186/392 (47%), Gaps = 20/392 (5%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           T ++  S L    N      G ++HA     G+  N  +   L+ L+ KCG    A  +F
Sbjct: 334 TRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVF 393

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           D   ++ +  +N M+ G+++N   EE++ + + ++    + D +TF  IL A T   S  
Sbjct: 394 DLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFY 453

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
                LG+ VH   +K  +     +  A +D Y K G    A+ +F ++  K+ I   ++
Sbjct: 454 -----LGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNAL 508

Query: 224 ISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
             G       E+A  + ++     +  D V ++  I   S +I       ++HC  IK  
Sbjct: 509 TVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACS-NIRATETGKQIHCLAIKYG 567

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
              +  +GS+L+D+Y+K G ++ +R++F  +   ++    ++I G+ +N N ++A++LF 
Sbjct: 568 ICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQ 627

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACM--VDLLG 397
            + +  ++P+ VTF   LS C  +     G+++       Y++K  + +   +  V L G
Sbjct: 628 QVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQV-----HCYTLKSGVLYDDTLLGVSLAG 682

Query: 398 ---RAGSLEQALKFVLEMPEKPNSDVWAALLS 426
              ++  LE A K + EMP+  N   W A++S
Sbjct: 683 IYLKSKMLEDANKLLTEMPDHKNLFEWTAIIS 714



 Score =  109 bits (272), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 154/376 (40%), Gaps = 75/376 (19%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +H  I + G      +   L+ L+ K G + YA        +R   A + +++ + ++G 
Sbjct: 88  LHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSGS 147

Query: 127 VEESLSLVRKL-VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             + L   R +  ++G RPD +  +++L A  C R  V      GR VH  ++K    + 
Sbjct: 148 PGDVLGAFRYIRCTAGGRPDQFGLAVVLSA--CSRVGV---LAYGRQVHCDVVKSGFSSS 202

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI--------------------- 224
                ALVD Y K G    AR VFD +   + IC +SMI                     
Sbjct: 203 VFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDK 262

Query: 225 --------------SGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS----------- 259
                         S   S G ++ A  + +K      V +NA+I G++           
Sbjct: 263 MGSAPDQVTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGL 322

Query: 260 -------------------ISIETARKAL----EVHCQLIKNVFFEDVKLGSALVDMYAK 296
                              +S     KA     ++H   + +    +V +GS+L+++YAK
Sbjct: 323 YKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAK 382

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG   DA+ VFD   +KN+  W +M+ G+ +N  P +A+ +F  M    +Q +  TF+  
Sbjct: 383 CGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSI 442

Query: 357 LSACGHAGLVDKGREI 372
           L AC +      G+++
Sbjct: 443 LGACTYLSSFYLGKQV 458



 Score =  104 bits (260), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 96/416 (23%), Positives = 181/416 (43%), Gaps = 69/416 (16%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           YG ++H  + K+G   +      L+ ++ KCG +  A ++FD +       ++ MIA Y 
Sbjct: 186 YGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYH 245

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMI---------LKASTCCRSNVPLPRNLGRMV 173
           + G  +E+L+L  ++   G  PD  T   I         L  +T     +P P  +    
Sbjct: 246 RVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNA 305

Query: 174 ----HAQI--------LKCDVKADDVLYT-----------ALVDSYVKGGKTSYARIVFD 210
               HAQ         L  D+++  +  T           A + ++V+G +   A ++  
Sbjct: 306 VISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHG 365

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS----------- 259
             L+ NV   +S+I+ +   G   DA+ +F  + EK+IV++NAM+ G+            
Sbjct: 366 --LDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRM 423

Query: 260 ----------------ISIETARKAL-------EVHCQLIKNVFFEDVKLGSALVDMYAK 296
                           +SI  A   L       +VHC  IKN     + + +A +DMY+K
Sbjct: 424 FQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSK 483

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
            G I DA+ +F  +  K+  +W ++  G  +N    +A+ +   M+   + P+ V+F  A
Sbjct: 484 YGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTA 543

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
           ++AC +    + G++I   +   Y +       + ++DL  + G +E + K   ++
Sbjct: 544 INACSNIRATETGKQI-HCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQV 598



 Score = 87.4 bits (215), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 4/210 (1%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           R +H +IL+        L  +LV+ Y K G+  YA        E+    ++S++S     
Sbjct: 86  RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 145

Query: 231 GFVEDAEEIFR----KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
           G   D    FR        +      A++      +       +VHC ++K+ F   V  
Sbjct: 146 GSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFC 205

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
            +ALVDMYAKCG + +ARRVFD +   +   W+SMI  Y + G   +AL LF  M +   
Sbjct: 206 EAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGS 265

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESM 376
            P+ VT +  +S    +G +D    + + M
Sbjct: 266 APDQVTLVTIISTLASSGRLDHATALLKKM 295



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 96/198 (48%), Gaps = 7/198 (3%)

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
           +LG +LV++Y K G++  A     +  ++     +S++  + ++G+P   L  F  ++ C
Sbjct: 102 RLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSGSPGDVLGAFRYIR-C 160

Query: 345 CV--QPNYVTFLGALSACGHAGLVDKGREIF-ESMERDYSMKPKMEHYACMVDLLGRAGS 401
               +P+       LSAC   G++  GR++  + ++  +S     E  A +VD+  + G 
Sbjct: 161 TAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCE--AALVDMYAKCGD 218

Query: 402 LEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSN 461
           +  A + V +    P++  W+++++        + A    + + K+ +       V + +
Sbjct: 219 VPNARR-VFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIIS 277

Query: 462 TLAAAGKWDSVTELREKM 479
           TLA++G+ D  T L +KM
Sbjct: 278 TLASSGRLDHATALLKKM 295


>gi|297846530|ref|XP_002891146.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336988|gb|EFH67405.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 554

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 156/483 (32%), Positives = 269/483 (55%), Gaps = 45/483 (9%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +LP  L+          G K+H +  KTG++ ++ +   L+ ++   G ++   ++FDE+
Sbjct: 32  TLPVVLKSIGRLRKVIEGEKVHGYAVKTGLESDSYVCNSLMGMYAALGKMEITHKVFDEM 91

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLV-SSGERPDGYTFSMILKASTCCRSNVPL 165
           P+R + ++N +I+ Y+ +G+ E+++S+ +++   S  + D  T    L A +  + N+ +
Sbjct: 92  PERDVVSWNGLISSYVGHGRFEDAISVFQRMSRESNLKADEGTIVSTLSACSVLK-NLEI 150

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
              + R V  +  +  V+  +    ALVD + K G    AR +FD M +KNV C TSM+S
Sbjct: 151 GERIYRYVVTE-FEMSVRTGN----ALVDMFCKCGCLDKARAIFDSMRDKNVKCWTSMVS 205

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI------------SIETAR------- 266
           G++S G  ++A E+F ++  KD+V++ AM+ GY               ++TAR       
Sbjct: 206 GYVSNGRTDEARELFERSPVKDVVLWTAMMNGYVQFNRFDEALELFRCMQTARIRPDNFV 265

Query: 267 -----------KALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311
                       ALE    +H  + +N    D  +G+ALVDMYAKCG I+ A  VF  M+
Sbjct: 266 LVSLLTGCAQTGALEQGKWIHGYIRENRVTVDKVVGTALVDMYAKCGCIETALGVFYEMK 325

Query: 312 QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371
           +++  +WTS+I G   NG   +AL+L+  M+   V+ + +TF+  L+AC H G V +GR 
Sbjct: 326 ERDTASWTSLIYGLATNGMSGRALDLYYEMENVGVRLDDITFVAVLTACSHGGFVAEGRR 385

Query: 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM---PEKPNSDVWAALLSSC 428
           IF SM   + ++PK EHY+C++DLL RAG L++A + + +M    +K    V+ +LLS+ 
Sbjct: 386 IFYSMTERHKIQPKSEHYSCLIDLLCRAGLLDEAEELIDKMHGERDKTLVPVYCSLLSAA 445

Query: 429 RLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDT 488
           R + +V++A   A ++ K+  +D   A+  L++  A+A +W+ VT +R KMK  G+ K  
Sbjct: 446 RNYGNVKIAERVAEKLEKVEVSD-SSAHTLLASVYASANRWEDVTNVRRKMKDLGIRKFP 504

Query: 489 GCS 491
           GCS
Sbjct: 505 GCS 507



 Score =  129 bits (324), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 153/329 (46%), Gaps = 41/329 (12%)

Query: 131 LSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT 190
           L+L  +L   G  PD +T  ++LK+    R  +      G  VH   +K  +++D  +  
Sbjct: 15  LALFGELRGQGLYPDNFTLPVVLKSIGRLRKVIE-----GEKVHGYAVKTGLESDSYVCN 69

Query: 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV 250
           +L+  Y   GK      VFD M E++V+    +IS ++  G  EDA  +F++   +  + 
Sbjct: 70  SLMGMYAALGKMEITHKVFDEMPERDVVSWNGLISSYVGHGRFEDAISVFQRMSRESNLK 129

Query: 251 YNAMIEGYSISIETARKALEVHCQLIKNVFFE---DVKLGSALVDMYAKCGKIDDARRVF 307
            +      ++S  +  K LE+  ++ + V  E    V+ G+ALVDM+ KCG +D AR +F
Sbjct: 130 ADEGTIVSTLSACSVLKNLEIGERIYRYVVTEFEMSVRTGNALVDMFCKCGCLDKARAIF 189

Query: 308 DHMQQKNVFTWTSMIDGYGKNGNP-------------------------------NQALE 336
           D M+ KNV  WTSM+ GY  NG                                 ++ALE
Sbjct: 190 DSMRDKNVKCWTSMVSGYVSNGRTDEARELFERSPVKDVVLWTAMMNGYVQFNRFDEALE 249

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           LF  MQ   ++P+    +  L+ C   G +++G+ I   +  +     K+   A +VD+ 
Sbjct: 250 LFRCMQTARIRPDNFVLVSLLTGCAQTGALEQGKWIHGYIRENRVTVDKVVGTA-LVDMY 308

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALL 425
            + G +E AL    EM E+  +  W +L+
Sbjct: 309 AKCGCIETALGVFYEMKERDTAS-WTSLI 336


>gi|115451769|ref|NP_001049485.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|108707037|gb|ABF94832.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113547956|dbj|BAF11399.1| Os03g0235200 [Oryza sativa Japonica Group]
 gi|125585525|gb|EAZ26189.1| hypothetical protein OsJ_10058 [Oryza sativa Japonica Group]
 gi|215706461|dbj|BAG93317.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 641

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 144/413 (34%), Positives = 235/413 (56%), Gaps = 26/413 (6%)

Query: 96  LKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERP--DG----YTF 149
           L  A ++FD +PQR   A++ +++GY ++GQ E +L+L R++    E P  DG    +T 
Sbjct: 111 LPSARELFDRMPQRDHFAWSALVSGYTRHGQPEAALALYRRM---QEEPGNDGADNEFTA 167

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA---DDVLYTALVDSYVKGGKTSYAR 206
           S  L A+   R         GR +H  +++  + A   D VL++AL D Y K G+   AR
Sbjct: 168 SSALAAAAAARCG-----RAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDAR 222

Query: 207 IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-----RKTVEKDIVVYNAMIEGYS-I 260
            VFD M  ++ +  T+M+  +   G   +   +F      + V  +   Y  ++   +  
Sbjct: 223 RVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAQF 282

Query: 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
           ++E+  +  +VH ++ K+   +     SAL+ MY+KCG +  A RVF+ M + ++ +WT+
Sbjct: 283 AVESFGR--QVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTA 340

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
           +I GY +NG P +AL  F M     ++P++VTF+G LSAC HAGLVDKG EIF S++  Y
Sbjct: 341 VISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQY 400

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIA 440
            ++   +HYAC++DLL R+G  E+A K +  M  KPN  +WA+LL  CR+H +V +A  A
Sbjct: 401 CIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRA 460

Query: 441 ANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           A  +F++   + P  YV L+N  A+ G +D V ++R  M+ +G+ K    SW+
Sbjct: 461 AEALFEIEPEN-PATYVTLANIYASVGLFDEVEDVRRIMESKGITKMPASSWI 512



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 149/326 (45%), Gaps = 22/326 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISI---KLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120
           G ++H H+ + G+      ++    L  ++ KCG +  A ++FD +P R   ++  M+  
Sbjct: 183 GRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVER 242

Query: 121 YLKNGQVEESLSL-VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           Y   G+  E   L +  L + G RP+ +T++ +L+A  C +  V    + GR VH ++ K
Sbjct: 243 YFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRA--CAQFAV---ESFGRQVHGRMAK 297

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
                     +AL+  Y K G    A  VF+ M + +++  T++ISG+   G  E+A   
Sbjct: 298 SGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRY 357

Query: 240 F----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSA-LVDMY 294
           F    R  ++ D V +  ++   + +     K LE+   + +    E      A ++D+ 
Sbjct: 358 FDMFLRSGIKPDHVTFVGVLSACAHA-GLVDKGLEIFHSIKEQYCIEHTADHYACVIDLL 416

Query: 295 AKCGKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP----N 349
           ++ G+ + A ++  +M  K N F W S++ G   + N   A      + E  ++P     
Sbjct: 417 SRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFE--IEPENPAT 474

Query: 350 YVTFLGALSACGHAGLVDKGREIFES 375
           YVT     ++ G    V+  R I ES
Sbjct: 475 YVTLANIYASVGLFDEVEDVRRIMES 500



 Score = 59.7 bits (143), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 52/93 (55%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G ++H  + K+G   +      LL ++ KCG +  A ++F+ + +  L ++  +I+GY 
Sbjct: 287 FGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYA 346

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           +NGQ EE+L      + SG +PD  TF  +L A
Sbjct: 347 QNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSA 379


>gi|242069679|ref|XP_002450116.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
 gi|241935959|gb|EES09104.1| hypothetical protein SORBIDRAFT_05g000785 [Sorghum bicolor]
          Length = 597

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 157/476 (32%), Positives = 250/476 (52%), Gaps = 32/476 (6%)

Query: 24  PPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNIS 83
           P + TFP  +++   L +PLTA                  G ++HA   K     N ++ 
Sbjct: 72  PSHLTFPFAIKSASRLPDPLTA------------------GAQLHARSLKLPSHSNPHVL 113

Query: 84  IKLLILHLKCGALKYAGQMFDEL--PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG 141
             LL L+ +CG L  A + FDE+  P  T+S +  +I  Y+  G+  E++ + R   +SG
Sbjct: 114 TSLLNLYARCGRLHDAQKAFDEMRQPPSTVS-WTALITAYMDAGRGLEAIGVARSAFASG 172

Query: 142 ERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK 201
            RPD +T   +L A  C R    +    G  V     K  +  +  + TA VD YVK G+
Sbjct: 173 VRPDSFTAVRVLTA--CARVADLVT---GEEVWTAAEKEGIAGNVFVATAAVDLYVKCGE 227

Query: 202 TSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS 261
              AR VFD M  K+V+   +M+ G+ S G   +A E+F     + +      + G ++S
Sbjct: 228 MDKARGVFDKMKNKDVVAWGAMVGGYASNGHPREALELFFAMQVEGMRPDCYTVAG-ALS 286

Query: 262 IETARKALEVHCQLIKNVFFEDV----KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT 317
             T   AL++  +++  + +++V     LG+AL+DMYAKCG   +A  VF  M+ +++  
Sbjct: 287 ACTRLGALDLGRRVVGMLQWDEVLGNPVLGTALIDMYAKCGSTGEAWMVFQKMRNRDIIV 346

Query: 318 WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377
           W +MI G G  G+   A  L   M++  +  N  TF+G L +C H GLV  GR  F +M 
Sbjct: 347 WNAMILGLGMTGHEKIAFALVGQMKKSGMTLNDNTFIGLLCSCTHTGLVKDGRRYFRNMT 406

Query: 378 RDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           + Y ++P++EHY  MVDLL RAG L++A + + +MP + N+ VW ALL  C++H + ++A
Sbjct: 407 QLYHIRPRIEHYGIMVDLLSRAGLLQEAHQLIQDMPMEANAVVWGALLGGCKIHRNADLA 466

Query: 438 NIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
                ++ +L   +  G YV LSN  + +G+W+   +LR +MK +GV K    SWV
Sbjct: 467 EHVLKQLIQLEPWN-SGNYVVLSNIYSNSGRWEDAAKLRLEMKAKGVEKVPASSWV 521


>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g09040, mitochondrial; Flags: Precursor
 gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
 gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1028

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 150/456 (32%), Positives = 253/456 (55%), Gaps = 15/456 (3%)

Query: 48  LPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP 107
           L S L+   +    + G ++H    K G+  + +    L+ ++ KCG +K A ++F  LP
Sbjct: 532 LASTLKACTHVHGLYQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLP 591

Query: 108 QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR 167
           + ++ + N +IAGY +N  +EE++ L +++++ G  P   TF+ I++A   C    P   
Sbjct: 592 EWSVVSMNALIAGYSQN-NLEEAVVLFQEMLTRGVNPSEITFATIVEA---CHK--PESL 645

Query: 168 NLGRMVHAQILKCDVKAD-DVLYTALVDSYVKG-GKTSYARIVFDMMLEKNVICSTSMIS 225
            LG   H QI K    ++ + L  +L+  Y+   G T    +  ++   K+++  T M+S
Sbjct: 646 TLGTQFHGQITKRGFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMS 705

Query: 226 GFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFF 281
           G    GF E+A + +++     V  D   +  ++   S+ + + R+   +H  +      
Sbjct: 706 GHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVCSV-LSSLREGRAIHSLIFHLAHD 764

Query: 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNGNPNQALELFCM 340
            D    + L+DMYAKCG +  + +VFD M+++ NV +W S+I+GY KNG    AL++F  
Sbjct: 765 LDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDS 824

Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
           M++  + P+ +TFLG L+AC HAG V  GR+IFE M   Y ++ +++H ACMVDLLGR G
Sbjct: 825 MRQSHIMPDEITFLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWG 884

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
            L++A  F+     KP++ +W++LL +CR+H D     I+A ++ +L   +   AYV LS
Sbjct: 885 YLQEADDFIEAQNLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQN-SSAYVLLS 943

Query: 461 NTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
           N  A+ G W+    LR+ M+ RGV K  G SW+  E
Sbjct: 944 NIYASQGCWEKANALRKVMRDRGVKKVPGYSWIDVE 979



 Score =  141 bits (355), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 197/434 (45%), Gaps = 79/434 (18%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H+     G+     +   ++ L+ KC  + YA + FD L ++ ++A+N M++ Y  
Sbjct: 79  GKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFL-EKDVTAWNSMLSMYSS 137

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR-SNVPLPRNLGRMVHAQILKCDV 182
            G+  + L     L  +   P+ +TFS++L  STC R +NV      GR +H  ++K  +
Sbjct: 138 IGKPGKVLRSFVSLFENQIFPNKFTFSIVL--STCARETNV----EFGRQIHCSMIKMGL 191

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           + +     ALVD Y K  + S AR VF+ +++ N +C T + SG++  G  E+A  +F +
Sbjct: 192 ERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFER 251

Query: 243 TVEK-----------------------------------DIVVYNAMIEGY------SIS 261
             ++                                   D+V +N MI G+      +++
Sbjct: 252 MRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVA 311

Query: 262 IE---TARKA-------------------------LEVHCQLIKNVFFEDVKLGSALVDM 293
           IE     RK+                         L VH + IK     ++ +GS+LV M
Sbjct: 312 IEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSM 371

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           Y+KC K++ A +VF+ +++KN   W +MI GY  NG  ++ +ELF  M+      +  TF
Sbjct: 372 YSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTF 431

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
              LS C  +  ++ G + F S+     +   +     +VD+  + G+LE A +    M 
Sbjct: 432 TSLLSTCAASHDLEMGSQ-FHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQIFERMC 490

Query: 414 EKPNSDVWAALLSS 427
           ++ N   W  ++ S
Sbjct: 491 DRDNV-TWNTIIGS 503



 Score =  124 bits (310), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 173/364 (47%), Gaps = 11/364 (3%)

Query: 55  YINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAY 114
           Y+ +  P   + +   +   G +P+    + ++  +++ G LK A  +F E+    + A+
Sbjct: 236 YVKAGLPEEAVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMSSPDVVAW 295

Query: 115 NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH 174
           N MI+G+ K G    ++     +  S  +    T   +L A       +    +LG +VH
Sbjct: 296 NVMISGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAI-----GIVANLDLGLVVH 350

Query: 175 AQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVE 234
           A+ +K  + ++  + ++LV  Y K  K   A  VF+ + EKN +   +MI G+   G   
Sbjct: 351 AEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESH 410

Query: 235 DAEEIFRKTVEK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSAL 290
              E+F          D   + +++   + S +    + + H  +IK    +++ +G+AL
Sbjct: 411 KVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGS-QFHSIIIKKKLAKNLFVGNAL 469

Query: 291 VDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY 350
           VDMYAKCG ++DAR++F+ M  ++  TW ++I  Y ++ N ++A +LF  M  C +  + 
Sbjct: 470 VDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDG 529

Query: 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL 410
                 L AC H   + +G+++   +     +   +   + ++D+  + G ++ A K   
Sbjct: 530 ACLASTLKACTHVHGLYQGKQV-HCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFS 588

Query: 411 EMPE 414
            +PE
Sbjct: 589 SLPE 592



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 85/297 (28%), Positives = 141/297 (47%), Gaps = 24/297 (8%)

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
           + L   +G+ VH++ L   + ++  L  A+VD Y K  + SYA   FD  LEK+V    S
Sbjct: 72  LALALRIGKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDF-LEKDVTAWNS 130

Query: 223 MISGFMSQG--------FVEDAE-EIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHC 273
           M+S + S G        FV   E +IF       IV+     E    ++E  R   ++HC
Sbjct: 131 MLSMYSSIGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARE---TNVEFGR---QIHC 184

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
            +IK     +   G ALVDMYAKC +I DARRVF+ +   N   WT +  GY K G P +
Sbjct: 185 SMIKMGLERNSYCGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEE 244

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMV 393
           A+ +F  M++   +P+++ F+  ++     G +   R +F  M       P +  +  M+
Sbjct: 245 AVLVFERMRDEGHRPDHLAFVTVINTYIRLGKLKDARLLFGEMS-----SPDVVAWNVMI 299

Query: 394 DLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
              G+ G    A+++   M +   K       ++LS+  +  ++++  +   E  KL
Sbjct: 300 SGHGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKL 356


>gi|218192399|gb|EEC74826.1| hypothetical protein OsI_10663 [Oryza sativa Indica Group]
          Length = 703

 Score =  251 bits (642), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 144/413 (34%), Positives = 235/413 (56%), Gaps = 26/413 (6%)

Query: 96  LKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERP--DG----YTF 149
           L  A ++FD +PQR   A++ +++GY ++GQ E +L+L R++    E P  DG    +T 
Sbjct: 111 LPSARELFDRMPQRDHFAWSALVSGYARHGQPEAALALYRRM---QEEPGNDGADNEFTA 167

Query: 150 SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA---DDVLYTALVDSYVKGGKTSYAR 206
           S  L A+   R         GR +H  +++  + A   D VL++AL D Y K G+   AR
Sbjct: 168 SSALAAAAAARCG-----RAGRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDAR 222

Query: 207 IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-----RKTVEKDIVVYNAMIEGYS-I 260
            VFD M  ++ +  T+M+  +   G   +   +F      + V  +   Y  ++   +  
Sbjct: 223 RVFDRMPVRDAVSWTAMVERYFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRACAEF 282

Query: 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
           ++E+  +  +VH ++ K+   +     SAL+ MY+KCG +  A RVF+ M + ++ +WT+
Sbjct: 283 AVESFGR--QVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTA 340

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
           +I GY +NG P +AL  F M     ++P++VTF+G LSAC HAGLVDKG EIF S++  Y
Sbjct: 341 VISGYAQNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSACAHAGLVDKGLEIFHSIKEQY 400

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIA 440
            ++   +HYAC++DLL R+G  E+A K +  M  KPN  +WA+LL  CR+H +V +A  A
Sbjct: 401 CIEHTADHYACVIDLLSRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRA 460

Query: 441 ANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           A  +F++   + P  YV L+N  A+ G +D V ++R  M+ +G+ K    SW+
Sbjct: 461 AEALFEIEPEN-PATYVTLANIYASVGLFDEVEDVRRIMESKGITKMPASSWI 512



 Score = 89.7 bits (221), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 80/326 (24%), Positives = 148/326 (45%), Gaps = 22/326 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISI---KLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120
           G ++H H+ + G+      ++    L  ++ KCG +  A ++FD +P R   ++  M+  
Sbjct: 183 GRELHCHVVRRGIDAAGGDAVLWSALADMYAKCGRVDDARRVFDRMPVRDAVSWTAMVER 242

Query: 121 YLKNGQVEESLSL-VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           Y   G+  E   L +  L + G RP+ +T++ +L+A  C    V    + GR VH ++ K
Sbjct: 243 YFDGGRGGEGFRLFLHMLRTRGVRPNEFTYAGVLRA--CAEFAV---ESFGRQVHGRMAK 297

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
                     +AL+  Y K G    A  VF+ M + +++  T++ISG+   G  E+A   
Sbjct: 298 SGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYAQNGQPEEALRY 357

Query: 240 F----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSA-LVDMY 294
           F    R  ++ D V +  ++   + +     K LE+   + +    E      A ++D+ 
Sbjct: 358 FDMFLRSGIKPDHVTFVGVLSACAHA-GLVDKGLEIFHSIKEQYCIEHTADHYACVIDLL 416

Query: 295 AKCGKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP----N 349
           ++ G+ + A ++  +M  K N F W S++ G   + N   A      + E  ++P     
Sbjct: 417 SRSGQFERAEKMIGNMAVKPNKFLWASLLGGCRIHKNVGLARRAAEALFE--IEPENPAT 474

Query: 350 YVTFLGALSACGHAGLVDKGREIFES 375
           YVT     ++ G    V+  R I ES
Sbjct: 475 YVTLANIYASVGLFDEVEDVRRIMES 500



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 52/93 (55%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G ++H  + K+G   +      LL ++ KCG +  A ++F+ + +  L ++  +I+GY 
Sbjct: 287 FGRQVHGRMAKSGTGDSCFAESALLRMYSKCGDMGSAVRVFEAMAKPDLVSWTAVISGYA 346

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           +NGQ EE+L      + SG +PD  TF  +L A
Sbjct: 347 QNGQPEEALRYFDMFLRSGIKPDHVTFVGVLSA 379


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  251 bits (641), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 143/487 (29%), Positives = 253/487 (51%), Gaps = 42/487 (8%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALK--------- 97
           S P  L+    S     G +IH H+ K G   +  ++  L+ ++ + G L+         
Sbjct: 67  SFPFLLKSCAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRS 126

Query: 98  --------------YAG--------QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVR 135
                         YA         ++FDE+  + + ++N MI+GY++    +E+L L +
Sbjct: 127 SHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYK 186

Query: 136 KLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDS 195
            ++ +  +PD  T  M+   S C +S       LGR +H+ I      ++  +   L+D 
Sbjct: 187 DMMKTNVKPDEST--MVTVVSACAQSG---SIELGRQLHSWIEDHGFGSNIKIVNVLIDL 241

Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE-----KDIVV 250
           Y K G+   A  +F  + +K+VI   ++I G       ++A  +F++ +       D+ +
Sbjct: 242 YSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTM 301

Query: 251 YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM 310
            + +     +      + + V+             L ++L+DMYAKCG I+ A++VFD M
Sbjct: 302 LSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSM 361

Query: 311 QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR 370
             +++ +W +MI G+  +G  N A +LF  M++  + P+ +TF+G LSAC H+G++D GR
Sbjct: 362 LTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGR 421

Query: 371 EIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRL 430
            IF SM +DY + PK+EHY CM+DLLG  G  ++A + +  MP +P+  +W +LL +C++
Sbjct: 422 HIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKM 481

Query: 431 HDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGC 490
           H++VE+    A  + K+   + PG+YV LSN  A AG+WD V ++R  +  +G+ K  GC
Sbjct: 482 HNNVELGESYAQNLIKIEP-ENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGC 540

Query: 491 SWVGTES 497
           S +  +S
Sbjct: 541 SSIEIDS 547



 Score =  149 bits (376), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 192/405 (47%), Gaps = 50/405 (12%)

Query: 84  IKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGER 143
           I+  +L      L YA  +F+ + +  L  +N M  G+  N     +L L   ++S G  
Sbjct: 3   IEFSVLSPHFDGLSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLL 62

Query: 144 PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTS 203
           P+ Y+F  +LK  +C +S   +    G+ +H  +LK     D  + T+L+  Y + G+  
Sbjct: 63  PNSYSFPFLLK--SCAKSKALIE---GQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLE 117

Query: 204 YARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIE 263
            A  VFD    ++V+  T++I+G+ S+G++ +A ++F +   KD+V +NAMI GY   +E
Sbjct: 118 DAHKVFDRSSHRHVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGY---VE 174

Query: 264 TA--RKALEVHCQLIK-NV----------------------------------FFEDVKL 286
           T   ++ALE++  ++K NV                                  F  ++K+
Sbjct: 175 TCNFKEALELYKDMMKTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKI 234

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
            + L+D+Y+KCG+++ A  +F  + +K+V +W ++I G+       +AL LF  M     
Sbjct: 235 VNVLIDLYSKCGEVETACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGE 294

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
            PN VT L  L AC H G +D GR I   + +R   +         ++D+  + G +E A
Sbjct: 295 SPNDVTMLSVLPACAHLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAA 354

Query: 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
            +    M  +  S  W A++    +H     AN A +   K+  N
Sbjct: 355 KQVFDSMLTRSLSS-WNAMIFGFAMHGK---ANAAFDLFSKMRKN 395



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 10/135 (7%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITK--TGVKPNTNISIKLLILHLKCGALKY 98
           N +T  S+  A  H    D    G  IH +I K   GV   +++   L+ ++ KCG ++ 
Sbjct: 297 NDVTMLSVLPACAHLGAIDI---GRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEA 353

Query: 99  AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
           A Q+FD +  R+LS++N MI G+  +G+   +  L  K+  +G  PD  TF  +L A  C
Sbjct: 354 AKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSA--C 411

Query: 159 CRSNVPLPRNLGRMV 173
             S +    +LGR +
Sbjct: 412 SHSGM---LDLGRHI 423


>gi|225448223|ref|XP_002266190.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33990
           [Vitis vinifera]
          Length = 707

 Score =  251 bits (641), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 155/444 (34%), Positives = 242/444 (54%), Gaps = 20/444 (4%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G  +H  + +TG   +  +   L+ ++ KCG +  A ++FD +  R +  +  MI  Y 
Sbjct: 150 FGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIGDAHEVFDRMLIRDVVCWTAMITLYE 209

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRM---VHAQILK 179
           +  +  ++L L RK+   G   D  T   +  A              GRM   VH   + 
Sbjct: 210 QAERPLKALMLFRKMQEEGFLGDEITAISVASAVG--------QLGDGRMAISVHGYAVL 261

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
                D  +  ++V  Y K G    AR+VFD M E+N I   SM+SG+   G   DA  +
Sbjct: 262 NGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGISWNSMLSGYTQNGRPTDALSL 321

Query: 240 FRK--TVEKDIVVYNAMIEGYSIS-IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
           F +    E D     A+I   + S + +     ++H  +I +    D  L +A++DMY K
Sbjct: 322 FNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFVISSKMDIDTTLRNAIMDMYMK 381

Query: 297 CGKIDDARRVFDH--MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           CG +D A  +F++  + +++V +W  +I GYG +G+  +ALELF  MQ   V+PN +TF 
Sbjct: 382 CGDLDTAVEMFNNCELGERDVSSWNVLISGYGVHGHGKEALELFSRMQVEGVEPNDITFT 441

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             LSAC HAGL+D+GR+ F  M +  S++P+M+HYACMVD+LGRAG L +A + + ++P 
Sbjct: 442 SILSACSHAGLIDEGRKCFADMTK-LSVRPEMKHYACMVDMLGRAGFLNEAFRLIKKIPS 500

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
           +P+ +VW ALL +CR+H + E+  IAAN +F+L   +  G YV +SN  AA+ KW  V  
Sbjct: 501 RPSDEVWGALLLACRIHGNTELGEIAANNLFQLEP-EHTGYYVLMSNIYAASNKWKEVEM 559

Query: 475 LREKMKLRGVLKDTGCSWV--GTE 496
           +R+ MK RG+ K    S +  GTE
Sbjct: 560 VRQNMKSRGLKKPAAFSVIEFGTE 583



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 131/422 (31%), Positives = 204/422 (48%), Gaps = 47/422 (11%)

Query: 39  LSNPLTATSLPSA---LQHYINSDTPFYGLK-IHAHITKTGVKPNT-NISIKLLILHLKC 93
           LS+     +LPS      H +   T    LK IH+ ++  G   +T +   +L+IL+ K 
Sbjct: 12  LSHTHKVLALPSLHHFYDHLLQCCTSLTTLKLIHSSLSTRGFLLHTPHFLARLIILYSKL 71

Query: 94  GALKYAGQMFD----------ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGER 143
           G L  A  +FD          + P   L   N M+  Y   G+  E++ L   +   G  
Sbjct: 72  GDLHSARTLFDHRHHHHHGHTQAPNSFLC--NTMLRAYANAGRSYEAIDLYIYMQRMGVG 129

Query: 144 PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTS 203
            + +T+  +LK    C S   L    G +VH Q+++    +D  +  ALVD Y K G+  
Sbjct: 130 VNNFTYPFVLKV---CASE--LGAVFGEVVHGQVVRTGFGSDLFVEAALVDMYAKCGEIG 184

Query: 204 YARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIE 263
            A  VFD ML ++V+C T+MI+ +        A  +FRK  E+  +      E  +IS+ 
Sbjct: 185 DAHEVFDRMLIRDVVCWTAMITLYEQAERPLKALMLFRKMQEEGFL----GDEITAISVA 240

Query: 264 TA-------RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF 316
           +A       R A+ VH   + N F  DV +G+++V MYAKCG ++ AR VFD M+++N  
Sbjct: 241 SAVGQLGDGRMAISVHGYAVLNGFIGDVSVGNSIVGMYAKCGNVERARLVFDRMEERNGI 300

Query: 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE----- 371
           +W SM+ GY +NG P  AL LF  MQ     PN VT L  +SAC + G    GR+     
Sbjct: 301 SWNSMLSGYTQNGRPTDALSLFNQMQASECDPNPVTALIMVSACSYLGSKHLGRKLHNFV 360

Query: 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFV--LEMPEKPNSDVWAALLSSCR 429
           I   M+ D +++        ++D+  + G L+ A++     E+ E+  S  W  L+S   
Sbjct: 361 ISSKMDIDTTLRN------AIMDMYMKCGDLDTAVEMFNNCELGERDVSS-WNVLISGYG 413

Query: 430 LH 431
           +H
Sbjct: 414 VH 415


>gi|357494773|ref|XP_003617675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519010|gb|AET00634.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  251 bits (641), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 152/440 (34%), Positives = 241/440 (54%), Gaps = 24/440 (5%)

Query: 52  LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL 111
           L  + NS   + G   H  I +    P+  +   LL ++ K G L +A ++F    Q ++
Sbjct: 322 LSGFGNSVDVYGGKAFHGLIIRRHYAPDEMVDNSLLSMYCKFGMLSFAERLFQR-SQGSI 380

Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR 171
             +N+MI GY + G+  + + L R++   G R +      I+ A   C     +  NLGR
Sbjct: 381 EYWNFMIVGYGRIGKNVKCIQLFREMQYLGIRSESVG---IVSAIASCGQLGEI--NLGR 435

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
            +H  ++K  V     +  +L++ Y K  K + +  +F+   E++VI   ++IS  +   
Sbjct: 436 SIHCNVIKGFVDETISVTNSLIEMYGKCDKMNVSWRIFNRS-ERDVILWNALISAHIHVK 494

Query: 232 FVEDAEEIFRKTVEKD--------IVVYNAMIEGYSISIETARKALEVHCQLIKNVFFED 283
             E+A  +F   + +D        +VV +A        +    K   +H  + +  F  +
Sbjct: 495 HYEEAISLFDIMIMEDQNPNTATLVVVLSACSH-----LAFLEKGERLHRYINEKGFKLN 549

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
           + LG+ALVDMYAKCG+++ +R VFD M +K+V  W +MI GYG NG    A+E+F +M+E
Sbjct: 550 LPLGTALVDMYAKCGQLEKSREVFDSMMEKDVICWNAMISGYGMNGYAESAIEIFNLMEE 609

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE 403
             V+PN +TFL  LSAC HAGLV++G+ +F  M+  YS+KP ++HY CMVDLLGR+ +LE
Sbjct: 610 SNVKPNEITFLSLLSACAHAGLVEEGKNVFAKMQ-SYSVKPNLKHYTCMVDLLGRSCNLE 668

Query: 404 QALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA-NIAANEIFKLNANDRPGAYVALSNT 462
           +A + VL MP  P+  VW ALLS+C+ H+ +EM   I  N I     ND  G Y+ ++N 
Sbjct: 669 EAEELVLSMPIPPDGGVWGALLSACKTHNQIEMGIRIGKNAIDSEPEND--GYYIMVANM 726

Query: 463 LAAAGKWDSVTELREKMKLR 482
            ++ G+WD    +R  MK R
Sbjct: 727 YSSIGRWDEAENVRRTMKDR 746



 Score =  109 bits (273), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 101/427 (23%), Positives = 197/427 (46%), Gaps = 26/427 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H  + K G+    +I   +L ++ KCG  + A Q F E+  + L ++  MI  Y +
Sbjct: 233 GRCLHGLVVKNGIGCLLDIQSSVLSMYCKCGVPREAYQSFSEVINKDLLSWTSMIRVYAR 292

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G + + +    +++ +   PDG     IL       ++V +    G+  H  I++    
Sbjct: 293 FGMMSDCVRFFWEMLENQVCPDGMVIGCILSGFG---NSVDVYG--GKAFHGLIIRRHYA 347

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK- 242
            D+++  +L+  Y K G  S+A  +F    + ++     MI G+   G      ++FR+ 
Sbjct: 348 PDEMVDNSLLSMYCKFGMLSFAERLFQRS-QGSIEYWNFMIVGYGRIGKNVKCIQLFREM 406

Query: 243 ----TVEKDIVVYNAMIE-GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
                  + + + +A+   G    I   R    +HC +IK    E + + ++L++MY KC
Sbjct: 407 QYLGIRSESVGIVSAIASCGQLGEINLGRS---IHCNVIKGFVDETISVTNSLIEMYGKC 463

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
            K++ + R+F+   +++V  W ++I  +    +  +A+ LF +M      PN  T +  L
Sbjct: 464 DKMNVSWRIFNR-SERDVILWNALISAHIHVKHYEEAISLFDIMIMEDQNPNTATLVVVL 522

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           SAC H   ++KG  +   +  +   K  +     +VD+  + G LE++ +    M EK +
Sbjct: 523 SACSHLAFLEKGERLHRYIN-EKGFKLNLPLGTALVDMYAKCGQLEKSREVFDSMMEK-D 580

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKL--NANDRPG--AYVALSNTLAAAGKWDSVT 473
              W A++S   ++   E    +A EIF L   +N +P    +++L +  A AG  +   
Sbjct: 581 VICWNAMISGYGMNGYAE----SAIEIFNLMEESNVKPNEITFLSLLSACAHAGLVEEGK 636

Query: 474 ELREKMK 480
            +  KM+
Sbjct: 637 NVFAKMQ 643



 Score = 67.8 bits (164), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 4/109 (3%)

Query: 266 RKALEVHCQLIKNVFF-EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
           R  + +H    K  FF E+  +GS+ V +Y++C +++DA +VFD +  ++V  WT+++ G
Sbjct: 126 RSGMNLHALACKVGFFPENSAVGSSFVSLYSRCDEMNDAVKVFDEIPVRDVVAWTALVIG 185

Query: 325 YGKNGNPNQALELFCMMQEC---CVQPNYVTFLGALSACGHAGLVDKGR 370
           Y +NG     LE    M        +PN  T  G   ACG+ G +  GR
Sbjct: 186 YVQNGESEMGLECISEMYRVGDDSQKPNARTLEGGFLACGNLGDLVSGR 234



 Score = 65.9 bits (159), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 76/317 (23%), Positives = 140/317 (44%), Gaps = 20/317 (6%)

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           L  HA    TG   N  I+ KL+ L+        +  +F  LP +    +N  +      
Sbjct: 28  LPFHAVTVTTGNSTNPFIAAKLISLYDTLNHPTSSSTLFHSLPFKDTFLWNSFLKTLFSR 87

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV-- 182
               + LS    + S    P+ +TF M+  +     ++  + R+ G  +HA  L C V  
Sbjct: 88  SLYPQFLSFYSLMRSENVLPNHFTFPMVASS----YAHFMMIRS-GMNLHA--LACKVGF 140

Query: 183 -KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG----FVEDAE 237
              +  + ++ V  Y +  + + A  VFD +  ++V+  T+++ G++  G     +E   
Sbjct: 141 FPENSAVGSSFVSLYSRCDEMNDAVKVFDEIPVRDVVAWTALVIGYVQNGESEMGLECIS 200

Query: 238 EIFRKTVEKDIVVYNA-MIEGYSISIETARKALE---VHCQLIKNVFFEDVKLGSALVDM 293
           E++R  V  D    NA  +EG  ++       +    +H  ++KN     + + S+++ M
Sbjct: 201 EMYR--VGDDSQKPNARTLEGGFLACGNLGDLVSGRCLHGLVVKNGIGCLLDIQSSVLSM 258

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           Y KCG   +A + F  +  K++ +WTSMI  Y + G  +  +  F  M E  V P+ +  
Sbjct: 259 YCKCGVPREAYQSFSEVINKDLLSWTSMIRVYARFGMMSDCVRFFWEMLENQVCPDGMVI 318

Query: 354 LGALSACGHAGLVDKGR 370
              LS  G++  V  G+
Sbjct: 319 GCILSGFGNSVDVYGGK 335


>gi|225438217|ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49740-like [Vitis vinifera]
          Length = 729

 Score =  251 bits (641), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 139/435 (31%), Positives = 228/435 (52%), Gaps = 15/435 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++HA   K G +  T +S   + ++  CG L     +FD L ++ L ++N +I  Y +  
Sbjct: 305 QVHAQAIKMGFEACTPVSNAAMTMYSSCGNLHAVHMVFDRLEEKDLISWNIIIMNYAQGN 364

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
               ++    ++  +G  PD +T   +L +S            + +M  A + K  + + 
Sbjct: 365 FYRLAILAFLQMQRAGIEPDEFTIGSLLASSESLE--------IVKMFQALVSKNGLNSK 416

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGF----VEDAEEIFR 241
             +  ALV ++ K G+   A  VF+ M   N+I   ++ISGF+  GF    +E   E+  
Sbjct: 417 IEVSNALVSAFSKHGQIEQAYQVFNNMSSPNLISWNTIISGFLFNGFTLQGLEQFYELLM 476

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
            T++ +     +++     SI   R   ++H  ++++  F    LG+AL+ MYAKCG +D
Sbjct: 477 STLKPNAYTL-SIVLSICASISALRHGKQIHGYILRSGVFSVTSLGNALITMYAKCGDLD 535

Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNYVTFLGALSAC 360
            + R+F+ M  +++ +W +MI  Y ++G   +A+  F  MQ+   V+P+  TF   LSAC
Sbjct: 536 WSLRIFNVMNGRDIVSWNAMISAYAQHGKGKEAVHFFKAMQDSGGVKPDQATFTAVLSAC 595

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            HAGLVD G  IF SM  DY  +P  +H +C+VDLLGRAG LE+A + +     K  S +
Sbjct: 596 SHAGLVDDGTRIFNSMVNDYGFEPGADHLSCIVDLLGRAGYLEEAERLINSKHLKIVSSI 655

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
           W  L S+C  H ++ +  I A  + ++  ND P  YV LSN  AAAG+W+     R+ M+
Sbjct: 656 WWTLFSACAAHGNLRLGRIVAGFLLEIEQND-PAVYVLLSNIYAAAGQWEEAANTRDLMQ 714

Query: 481 LRGVLKDTGCSWVGT 495
              V K  GCSW+G+
Sbjct: 715 KTRVAKQPGCSWIGS 729



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 126/495 (25%), Positives = 215/495 (43%), Gaps = 36/495 (7%)

Query: 11  VFSSTHNRHYTLVPPNQTFPPKLQ-----NYDSLSNPLTATSLPSALQHYI---NSDTPF 62
           +F   H+ +Y L P + T    L       Y +  N L A S+ + L+ Y    N+   F
Sbjct: 39  LFVQIHSSNY-LKPDHFTLSSTLTACANLRYAASGNQLHAYSIQTGLKAYTHVGNTLLSF 97

Query: 63  YG----LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMI 118
           Y     L     +      P+      LL    K G + YA  +F++ P+     +N +I
Sbjct: 98  YAKSKDLVSVQRVFNEIENPDVYSWTTLLSACTKLGQIGYACHLFNQTPRMIPVVWNAII 157

Query: 119 AGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
            G  +N   E +L+L R++   G R D YTF+ +L  S C    +    + GR VH  ++
Sbjct: 158 TGCAENKHTEIALNLFREMHQLGVRHDKYTFASVL--SLCSLELL----DFGREVHTLVI 211

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV---ICSTSMISGFMSQGFVED 235
           K        +  AL+  Y   GK + A  VF+   E  V   I    MI G  S G  E+
Sbjct: 212 KTGFLVRASVINALLTMYFNSGKVADAYEVFEEA-ESTVHDDITFNVMIGGLASVGRDEE 270

Query: 236 AEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
           A  +F++  E  +            S  +AR + +VH Q IK  F     + +A + MY+
Sbjct: 271 ALIMFKEMQEACLRPTELTFVSVMSSCSSARVSHQVHAQAIKMGFEACTPVSNAAMTMYS 330

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
            CG +     VFD +++K++ +W  +I  Y +      A+  F  MQ   ++P+  T +G
Sbjct: 331 SCGNLHAVHMVFDRLEEKDLISWNIIIMNYAQGNFYRLAILAFLQMQRAGIEPDEFT-IG 389

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
           +L A   +  + K   +F+++     +  K+E    +V    + G +EQA + V      
Sbjct: 390 SLLASSESLEIVK---MFQALVSKNGLNSKIEVSNALVSAFSKHGQIEQAYQ-VFNNMSS 445

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFK-LNANDRPGAYVALSNTLAAAGKWDSVTE 474
           PN   W  ++S   L +   +  +   + ++ L +  +P AY  LS  L+      S++ 
Sbjct: 446 PNLISWNTIISGF-LFNGFTLQGL--EQFYELLMSTLKPNAYT-LSIVLSICA---SISA 498

Query: 475 LREKMKLRGVLKDTG 489
           LR   ++ G +  +G
Sbjct: 499 LRHGKQIHGYILRSG 513



 Score = 61.2 bits (147), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 70/122 (57%), Gaps = 10/122 (8%)

Query: 35  NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           N  +LS  L+  +  SAL+H         G +IH +I ++GV   T++   L+ ++ KCG
Sbjct: 482 NAYTLSIVLSICASISALRH---------GKQIHGYILRSGVFSVTSLGNALITMYAKCG 532

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE-RPDGYTFSMIL 153
            L ++ ++F+ +  R + ++N MI+ Y ++G+ +E++   + +  SG  +PD  TF+ +L
Sbjct: 533 DLDWSLRIFNVMNGRDIVSWNAMISAYAQHGKGKEAVHFFKAMQDSGGVKPDQATFTAVL 592

Query: 154 KA 155
            A
Sbjct: 593 SA 594


>gi|357477961|ref|XP_003609266.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355510321|gb|AES91463.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 738

 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 139/404 (34%), Positives = 228/404 (56%), Gaps = 13/404 (3%)

Query: 94  GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
           G L  A ++FDE+P + + ++N MI+GY+++G+ EE++    ++  +   P+  T  ++L
Sbjct: 211 GCLDDARRLFDEIPVKDVVSWNAMISGYVQSGRFEEAIVCFYEMQEANVLPNKSTMVVVL 270

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
            A    RS       LG+ + + +      ++  L  AL+D Y K G+T  AR +FD + 
Sbjct: 271 SACGHTRSG-----ELGKWIGSWVRDNGFGSNLQLTNALIDMYCKCGETDIARELFDGIE 325

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKAL 269
           EK+VI   +MI G+      E+A  +F    R  V+ + V +  ++   +  +       
Sbjct: 326 EKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLGILHACA-CLGALDLGK 384

Query: 270 EVHCQLIKNVF-FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
            VH  + KN+    +  L ++L+DMYAKCG I+ A RVF  M  +N+ +W +M+ G+  +
Sbjct: 385 WVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFRSMHSRNLASWNAMLSGFAMH 444

Query: 329 GNPNQALELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           G+  +AL LF  M+ +   +P+ +TF+G LSAC  AGLVD G + F SM +DY + PK++
Sbjct: 445 GHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVDLGHQYFRSMIQDYGISPKLQ 504

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           HY CM+DLL RA   E+A   +  M  +P+  +W +LLS+C+ H  VE     A  +F+L
Sbjct: 505 HYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLSACKAHGRVEFGEYVAERLFQL 564

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
              +  GA+V LSN  A AG+WD V  +R ++  +G+ K  GC+
Sbjct: 565 EP-ENAGAFVLLSNIYAGAGRWDDVARIRTRLNDKGMKKVPGCT 607



 Score =  174 bits (440), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 124/458 (27%), Positives = 217/458 (47%), Gaps = 74/458 (16%)

Query: 43  LTATSLPSALQHYINSDTPFYGL-------------------KIHAHITKTGVKPNTNIS 83
           +T++  PS L     SD P+  L                   +IH+ I KTG+  N  + 
Sbjct: 4   VTSSPSPSILHFLPASDPPYKILEQHPYLNLLEKCKNINTFKQIHSLIIKTGL--NNTVF 61

Query: 84  IKLLILHL----KCGALKYAGQMFDELPQR---TLSAYNYMIAGYLKNGQVEESLSLVRK 136
           ++  ++H       G L YA  +F+E  Q     +  +N +I GY  +     SL L  +
Sbjct: 62  VQSKLIHFCAVSPSGDLSYALSLFEENQQHHKHNVFIWNSLIRGYSLSSSPLSSLHLFSR 121

Query: 137 LVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196
           ++  G +P+ +TF  + K+ T  ++      + G+ +HA  LK  +  +  ++T+++  Y
Sbjct: 122 MLYYGVQPNSHTFPFLFKSCTKAKAT-----HEGKQLHAHALKLALHFNPHVHTSVIHMY 176

Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE 256
              G+  +AR+VFD    ++ +  T++I+G++SQG ++DA  +F +   KD+V +NAMI 
Sbjct: 177 ASVGEMDFARLVFDKSSLRDAVSFTALITGYVSQGCLDDARRLFDEIPVKDVVSWNAMIS 236

Query: 257 GYSISIETARKALEVHC-------------------------------------QLIKNV 279
           GY   +++ R    + C                                      +  N 
Sbjct: 237 GY---VQSGRFEEAIVCFYEMQEANVLPNKSTMVVVLSACGHTRSGELGKWIGSWVRDNG 293

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
           F  +++L +AL+DMY KCG+ D AR +FD +++K+V +W +MI GY       +AL LF 
Sbjct: 294 FGSNLQLTNALIDMYCKCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFE 353

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
           +M    V+PN VTFLG L AC   G +D G+ +   ++++         +  ++D+  + 
Sbjct: 354 VMLRSNVKPNDVTFLGILHACACLGALDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKC 413

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           G +E A +    M  + N   W A+LS   +H   E A
Sbjct: 414 GCIEAAERVFRSMHSR-NLASWNAMLSGFAMHGHAERA 450



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 77/306 (25%), Positives = 143/306 (46%), Gaps = 17/306 (5%)

Query: 32  KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHL 91
           ++Q  + L N  T   + SA  H  + +    G  I + +   G   N  ++  L+ ++ 
Sbjct: 253 EMQEANVLPNKSTMVVVLSACGHTRSGEL---GKWIGSWVRDNGFGSNLQLTNALIDMYC 309

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           KCG    A ++FD + ++ + ++N MI GY      EE+L+L   ++ S  +P+  TF  
Sbjct: 310 KCGETDIARELFDGIEEKDVISWNTMIGGYSYLSLYEEALALFEVMLRSNVKPNDVTFLG 369

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV-LYTALVDSYVKGGKTSYARIVFD 210
           IL A  C  +      +LG+ VHA I K    + +  L+T+L+D Y K G    A  VF 
Sbjct: 370 ILHACACLGA-----LDLGKWVHAYIDKNLRNSSNASLWTSLIDMYAKCGCIEAAERVFR 424

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE 270
            M  +N+    +M+SGF   G  E A  +F + V K +   + +     +S  T    ++
Sbjct: 425 SMHSRNLASWNAMLSGFAMHGHAERALALFSEMVNKGLFRPDDITFVGVLSACTQAGLVD 484

Query: 271 VHCQLIKNVFFEDVKLGSAL------VDMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMID 323
           +  Q  +++  +D  +   L      +D+ A+  K ++A  +  +M+ + +   W S++ 
Sbjct: 485 LGHQYFRSM-IQDYGISPKLQHYGCMIDLLARAEKFEEAEILMKNMEMEPDGAIWGSLLS 543

Query: 324 GYGKNG 329
               +G
Sbjct: 544 ACKAHG 549


>gi|297799986|ref|XP_002867877.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313713|gb|EFH44136.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 760

 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 140/425 (32%), Positives = 232/425 (54%), Gaps = 11/425 (2%)

Query: 74  TGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL 133
           +G +PN    I +L    + G ++   ++F+ +PQ ++SA+N M++GY      EE+++ 
Sbjct: 330 SGFEPNEVTCISILGACFRSGDVETGRRIFNTIPQPSVSAWNAMLSGYSNYEHYEEAINN 389

Query: 134 VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALV 193
            R++     +PD  T S+IL  S+C R         G+ +H   ++ +   D  + + L+
Sbjct: 390 FRQMQFQNLKPDRTTLSVIL--SSCARLRFL---EGGKQIHGVAIRTETSEDSHIVSGLI 444

Query: 194 DSYVKGGKTSYARIVFDMML-EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN 252
             Y +  K      +FD  + E ++ C  SMISG         A  +FR+  +  +++ N
Sbjct: 445 AVYSECEKMEICECIFDDCINELDIACWNSMISGLRRNTLDTKALMLFRRMHQTSVLLPN 504

Query: 253 ----AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFD 308
               A++ G    + +     + H Q++K+ +  D  + +A+ DMY KCG+I+ AR+ FD
Sbjct: 505 ETTYAIVLGSCSRLCSLVHGRQFHGQVVKSGYVSDSFVETAVTDMYCKCGEIESARQFFD 564

Query: 309 HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDK 368
            + +KN   W  MI GY  NG  ++A++L+  M     +P+ +TF+  L+AC H+GLVD 
Sbjct: 565 TVSRKNTVIWNEMIHGYAHNGRGDEAVDLYREMISAGEKPDGITFVSVLTACSHSGLVDT 624

Query: 369 GREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
           G EI  SM+RD+ ++P+++HY C+VD LGRAG LE A       P K +S +W  LLSSC
Sbjct: 625 GLEILSSMQRDHGIEPELDHYICIVDCLGRAGRLEDAETLAEATPYKSSSVLWEILLSSC 684

Query: 429 RLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDT 488
           R++ DV +A   A ++  L+  +   AYV LSNT ++  +WD    L+E M    V K  
Sbjct: 685 RVYGDVSLARRVAEKLMHLDPQN-SAAYVLLSNTYSSVRQWDDAAALQELMNKNRVHKTP 743

Query: 489 GCSWV 493
           G SW+
Sbjct: 744 GHSWI 748



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 172/360 (47%), Gaps = 28/360 (7%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
            L    K G L+ A ++FD +P+R + ++N MI+  ++ G  E++L +  ++V  G  P 
Sbjct: 64  FLTFRCKVGDLEEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALDVYGRMVGDGFLPS 123

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGG-KTSY 204
            +T + +L A +  +  V     +G   H   +K  +  +  +  AL+  Y K G    Y
Sbjct: 124 RFTLASVLSACSKVQDGV-----IGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFMVDY 178

Query: 205 ARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIET 264
              VF+ + E N +  T++ISG   +  V +A  +FR   EK + V + +     +SI  
Sbjct: 179 GVRVFESLSEPNEVSFTTVISGLARENKVLEAVHMFRLMCEKGVQV-DCVCLSNILSISV 237

Query: 265 ARKAL-------------EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311
            R+               ++H   ++  F  ++ L ++L+++YAK   ++ A  +F  M 
Sbjct: 238 PREGCDSLSEIYGNVLGKQIHSLALRRGFVGELHLNNSLLEIYAKNKDMNGAELIFTEMP 297

Query: 312 QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371
           + NV +W  MI G+G+    ++++E    M++   +PN VT +  L AC  +G V+ GR 
Sbjct: 298 EVNVVSWNIMIAGFGQEYRSDKSIEYLKRMRDSGFEPNEVTCISILGACFRSGDVETGRR 357

Query: 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP---EKPNSDVWAALLSSC 428
           IF ++      +P +  +  M+         E+A+    +M     KP+    + +LSSC
Sbjct: 358 IFNTIP-----QPSVSAWNAMLSGYSNYEHYEEAINNFRQMQFQNLKPDRTTLSVILSSC 412



 Score = 97.1 bits (240), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 97/438 (22%), Positives = 176/438 (40%), Gaps = 78/438 (17%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGAL-KYAGQMFDELPQRTLSAYNYMIAGYL 122
           G++ H    KTG+  N  +   LL ++ KCG +  Y  ++F+ L +    ++  +I+G  
Sbjct: 143 GMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFMVDYGVRVFESLSEPNEVSFTTVISGLA 202

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST---CCRSNVPLPRN-LGRMVHAQIL 178
           +  +V E++ + R +   G + D    S IL  S     C S   +  N LG+ +H+  L
Sbjct: 203 RENKVLEAVHMFRLMCEKGVQVDCVCLSNILSISVPREGCDSLSEIYGNVLGKQIHSLAL 262

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF----------- 227
           +     +  L  +L++ Y K    + A ++F  M E NV+    MI+GF           
Sbjct: 263 RRGFVGELHLNNSLLEIYAKNKDMNGAELIFTEMPEVNVVSWNIMIAGFGQEYRSDKSIE 322

Query: 228 ------------------------MSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS---- 259
                                      G VE    IF    +  +  +NAM+ GYS    
Sbjct: 323 YLKRMRDSGFEPNEVTCISILGACFRSGDVETGRRIFNTIPQPSVSAWNAMLSGYSNYEH 382

Query: 260 -------------ISIETARKAL-----------------EVHCQLIKNVFFEDVKLGSA 289
                         +++  R  L                 ++H   I+    ED  + S 
Sbjct: 383 YEEAINNFRQMQFQNLKPDRTTLSVILSSCARLRFLEGGKQIHGVAIRTETSEDSHIVSG 442

Query: 290 LVDMYAKCGKIDDARRVFDH-MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV-Q 347
           L+ +Y++C K++    +FD  + + ++  W SMI G  +N    +AL LF  M +  V  
Sbjct: 443 LIAVYSECEKMEICECIFDDCINELDIACWNSMISGLRRNTLDTKALMLFRRMHQTSVLL 502

Query: 348 PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALK 407
           PN  T+   L +C     +  GR+    + +   +       A + D+  + G +E A +
Sbjct: 503 PNETTYAIVLGSCSRLCSLVHGRQFHGQVVKSGYVSDSFVETA-VTDMYCKCGEIESARQ 561

Query: 408 FVLEMPEKPNSDVWAALL 425
           F  +   + N+ +W  ++
Sbjct: 562 F-FDTVSRKNTVIWNEMI 578



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 58/95 (61%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G + H  + K+G   ++ +   +  ++ KCG ++ A Q FD + ++    +N MI GY 
Sbjct: 523 HGRQFHGQVVKSGYVSDSFVETAVTDMYCKCGEIESARQFFDTVSRKNTVIWNEMIHGYA 582

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
            NG+ +E++ L R+++S+GE+PDG TF  +L A +
Sbjct: 583 HNGRGDEAVDLYREMISAGEKPDGITFVSVLTACS 617



 Score = 73.2 bits (178), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 47/236 (19%)

Query: 167 RNLGRMVHAQILKC------DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           R+ G    A +L+C       + +D  L   L+D Y++ G   YAR +FD M  ++V   
Sbjct: 2   RSGGNKYLASLLRCYRDERTGLNSDTYLCNRLLDLYIEFGDGDYARKLFDEMSLRDVYSW 61

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETA--RKALEVHCQLIKN 278
            + ++     G +E+A E+F    E+D+V +N MI   S+ +      KAL+V+ +++ +
Sbjct: 62  NAFLTFRCKVGDLEEACEVFDGMPERDVVSWNNMI---SVLVRKGFEEKALDVYGRMVGD 118

Query: 279 VFF-----------------------------------EDVKLGSALVDMYAKCG-KIDD 302
            F                                    +++ +G+AL+ MYAKCG  +D 
Sbjct: 119 GFLPSRFTLASVLSACSKVQDGVIGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFMVDY 178

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
             RVF+ + + N  ++T++I G  +     +A+ +F +M E  VQ + V     LS
Sbjct: 179 GVRVFESLSEPNEVSFTTVISGLARENKVLEAVHMFRLMCEKGVQVDCVCLSNILS 234



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 59/249 (23%), Positives = 126/249 (50%), Gaps = 17/249 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE-LPQRTLSAYNYMIAGYL 122
           G +IH    +T    +++I   L+ ++ +C  ++    +FD+ + +  ++ +N MI+G  
Sbjct: 421 GKQIHGVAIRTETSEDSHIVSGLIAVYSECEKMEICECIFDDCINELDIACWNSMISGLR 480

Query: 123 KNGQVEESLSLVRKL-VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           +N    ++L L R++  +S   P+  T++++L + +   S V      GR  H Q++K  
Sbjct: 481 RNTLDTKALMLFRRMHQTSVLLPNETTYAIVLGSCSRLCSLVH-----GRQFHGQVVKSG 535

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
             +D  + TA+ D Y K G+   AR  FD +  KN +    MI G+   G  ++A +++R
Sbjct: 536 YVSDSFVETAVTDMYCKCGEIESARQFFDTVSRKNTVIWNEMIHGYAHNGRGDEAVDLYR 595

Query: 242 KTV----EKDIVVYNAMIEGYSIS--IETARKALEVHCQLIKNVFFE-DVKLGSALVDMY 294
           + +    + D + + +++   S S  ++T    LE+   + ++   E ++     +VD  
Sbjct: 596 EMISAGEKPDGITFVSVLTACSHSGLVDT---GLEILSSMQRDHGIEPELDHYICIVDCL 652

Query: 295 AKCGKIDDA 303
            + G+++DA
Sbjct: 653 GRAGRLEDA 661



 Score = 45.1 bits (105), Expect = 0.090,   Method: Compositional matrix adjust.
 Identities = 25/87 (28%), Positives = 43/87 (49%)

Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
           +L   +   DV   +A +    K G +++A  VFD M +++V +W +MI    + G   +
Sbjct: 48  KLFDEMSLRDVYSWNAFLTFRCKVGDLEEACEVFDGMPERDVVSWNNMISVLVRKGFEEK 107

Query: 334 ALELFCMMQECCVQPNYVTFLGALSAC 360
           AL+++  M      P+  T    LSAC
Sbjct: 108 ALDVYGRMVGDGFLPSRFTLASVLSAC 134


>gi|356541012|ref|XP_003538978.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g50270-like [Glycine max]
          Length = 560

 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 155/439 (35%), Positives = 232/439 (52%), Gaps = 15/439 (3%)

Query: 58  SDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYM 117
           +  PF    I+A I K G   +  I   L+      G ++ A Q+FDE P +   A+  +
Sbjct: 123 AQNPFM---IYAQIFKLGFDLDLFIGNALIPAFANSGFVESARQVFDESPFQDTVAWTAL 179

Query: 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQI 177
           I GY+KN    E+L    K+       D  T + IL+A+           + GR VH   
Sbjct: 180 INGYVKNDCPGEALKCFVKMRLRDRSVDAVTVASILRAAALVGD-----ADFGRWVHGFY 234

Query: 178 LKCD-VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
           ++   V+ D  +++AL+D Y K G    A  VF+ +  ++V+C T +++G++     +DA
Sbjct: 235 VEAGRVQLDGYVFSALMDMYFKCGHCEDACKVFNELPHRDVVCWTVLVAGYVQSNKFQDA 294

Query: 237 EEIFRKTVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFEDVKLGSALVD 292
              F   +  D V  N       +S      AL+    VH  +  N    +V LG+ALVD
Sbjct: 295 LRAFWDMLS-DNVAPNDFTLSSVLSACAQMGALDQGRLVHQYIECNKINMNVTLGTALVD 353

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           MYAKCG ID+A RVF++M  KNV+TWT +I+G   +G+   AL +FC M +  +QPN VT
Sbjct: 354 MYAKCGSIDEALRVFENMPVKNVYTWTVIINGLAVHGDALGALNIFCCMLKSGIQPNEVT 413

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
           F+G L+AC H G V++G+ +FE M+  Y +KP+M+HY CMVD+LGRAG LE A + +  M
Sbjct: 414 FVGVLAACSHGGFVEEGKRLFELMKHAYHLKPEMDHYGCMVDMLGRAGYLEDAKQIIDNM 473

Query: 413 PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSV 472
           P KP+  V  AL  +C +H   EM     N +     N   G+Y  L+N       W++ 
Sbjct: 474 PMKPSPGVLGALFGACLVHKAFEMGEHIGNLLVNQQPN-HSGSYALLANLYKMCQNWEAA 532

Query: 473 TELREKMKLRGVLKDTGCS 491
            ++R+ MK   V+K  G S
Sbjct: 533 AQVRKLMKGLRVVKAPGYS 551



 Score =  118 bits (295), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 94/336 (27%), Positives = 155/336 (46%), Gaps = 15/336 (4%)

Query: 102 MFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161
           +FD +        N MIA          SL    KL   G +PD +TF ++LK  +   +
Sbjct: 67  LFDTINTPNTRLLNKMIAAC---SHPHISLLCYAKLRQKGVQPDKHTFPLLLKTFSKSIA 123

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
             P       M++AQI K     D  +  AL+ ++   G    AR VFD    ++ +  T
Sbjct: 124 QNPF------MIYAQIFKLGFDLDLFIGNALIPAFANSGFVESARQVFDESPFQDTVAWT 177

Query: 222 SMISGFMSQGFVEDAEEIFRKTVEKDI---VVYNAMIEGYSISIETARKALEVHCQLIKN 278
           ++I+G++      +A + F K   +D     V  A I   +  +  A     VH   ++ 
Sbjct: 178 ALINGYVKNDCPGEALKCFVKMRLRDRSVDAVTVASILRAAALVGDADFGRWVHGFYVEA 237

Query: 279 VFFE-DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
              + D  + SAL+DMY KCG  +DA +VF+ +  ++V  WT ++ GY ++     AL  
Sbjct: 238 GRVQLDGYVFSALMDMYFKCGHCEDACKVFNELPHRDVVCWTVLVAGYVQSNKFQDALRA 297

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
           F  M    V PN  T    LSAC   G +D+GR + + +E +  +   +     +VD+  
Sbjct: 298 FWDMLSDNVAPNDFTLSSVLSACAQMGALDQGRLVHQYIECN-KINMNVTLGTALVDMYA 356

Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDD 433
           + GS+++AL+    MP K N   W  +++   +H D
Sbjct: 357 KCGSIDEALRVFENMPVK-NVYTWTVIINGLAVHGD 391


>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
 gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
          Length = 838

 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 150/458 (32%), Positives = 246/458 (53%), Gaps = 15/458 (3%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           +P+T  S+ SA     N      G  +H  + + G+     ++  LL L+ K G++K A 
Sbjct: 343 DPVTLVSVASACAQLSNFKL---GRSVHGFVKRKGLDNKLCLANSLLHLYGKTGSIKNAS 399

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
            +F E+  + + +++ M+A Y  NG   + L L  +++    +P+  T   +L+A  C  
Sbjct: 400 NLFREMSDKDIISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACI- 458

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           SN+      G  +H   +    + +  + TAL+D Y+K      A  +F+ M +K+VI  
Sbjct: 459 SNL----EEGMKIHELAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKKDVIAW 514

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEK----DIVVYNAMIEGYSISIETARKALEVHCQLI 276
             + SG+   G V ++  +FR  +      D +    ++   S  +   ++A+ +H  +I
Sbjct: 515 AVLFSGYADNGMVHESMWVFRNMLSSGTRPDAIALVKILTTIS-ELGILQQAVCLHAFVI 573

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           KN F  +  +G++L+++YAKC  I+DA +VF  M  K+V TW+S+I  YG +G   +AL+
Sbjct: 574 KNGFENNQFIGASLIEVYAKCSSIEDANKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALK 633

Query: 337 LFCMM-QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDL 395
           LF  M      +PN VTF+  LSAC H+GL+ +G  +F+ M   Y +KP  EHYA MVDL
Sbjct: 634 LFYQMANHSDTKPNNVTFISILSACSHSGLIKEGINMFDIMVNKYKLKPNSEHYAIMVDL 693

Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA 455
           LGR G L+ AL  +  MP +   D+W ALL +CR+H +++M  +AA  +F L+ N   G 
Sbjct: 694 LGRMGELDMALDVINNMPMQAGPDIWGALLGACRIHQNIKMGEVAAKNLFSLDPN-HAGY 752

Query: 456 YVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           Y+ LSN  +    W S T+LR  +K + + K  G S V
Sbjct: 753 YILLSNIYSVDENWHSATKLRRLVKEKRLNKIVGQSVV 790



 Score =  149 bits (377), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 185/370 (50%), Gaps = 16/370 (4%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++H+   K G+  ++ I  KL +L+ +  ++ +A ++F E P RT+  +N ++  Y   G
Sbjct: 157 QLHSQCLKAGLVHDSFIVTKLNVLYARYASIHHAHKLFQETPHRTVYLWNALLRSYCFEG 216

Query: 126 QVEESLSLVRKL-----VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
           +  E+LSL R++     VS  ERPD Y+ S+ LK+    R  +     LG+++H  + K 
Sbjct: 217 EWVETLSLFRQMNNVSSVSIEERPDNYSVSIALKSCAGLRKLL-----LGKVIHGFLKKV 271

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
            +  D  + +AL+D Y K G+ + A  VF    + +V+  TS+ISG+   G  E A   F
Sbjct: 272 RIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISGYEQSGSPELALAFF 331

Query: 241 RKTVEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
            + V  + V    V    +      +   +    VH  + +      + L ++L+ +Y K
Sbjct: 332 SRMVVSEKVSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRKGLDNKLCLANSLLHLYGK 391

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
            G I +A  +F  M  K++ +W++M+  Y  NG     L+LF  M +  ++PN+VT +  
Sbjct: 392 TGSIKNASNLFREMSDKDIISWSTMVACYADNGAETDVLDLFNEMLDKRIKPNWVTVVSV 451

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           L AC     +++G +I E +  +Y  + +      ++D+  +  S E+A+     MP+K 
Sbjct: 452 LRACACISNLEEGMKIHE-LAVNYGFEMETTVSTALMDMYMKCFSPEKAVDLFNRMPKK- 509

Query: 417 NSDVWAALLS 426
           +   WA L S
Sbjct: 510 DVIAWAVLFS 519



 Score =  118 bits (295), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 112/465 (24%), Positives = 210/465 (45%), Gaps = 56/465 (12%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IH  + K  +  +  +   L+ L+ KCG +  A ++F E P+  +  +  +I+GY +
Sbjct: 261 GKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISGYEQ 320

Query: 124 NGQVEESLSLV-RKLVSSGERPDGYTFSMILKASTCCR-SNVPLPRNLGRMVHAQILKCD 181
           +G  E +L+   R +VS    PD  T   +  AS C + SN      LGR VH  + +  
Sbjct: 321 SGSPELALAFFSRMVVSEKVSPDPVTLVSV--ASACAQLSNF----KLGRSVHGFVKRKG 374

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +     L  +L+  Y K G    A  +F  M +K++I  ++M++ +   G   D  ++F 
Sbjct: 375 LDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDIISWSTMVACYADNGAETDVLDLFN 434

Query: 242 KTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFE-DVKLGSALVDMYAK 296
           + ++K I    V   +++   +  I    + +++H +L  N  FE +  + +AL+DMY K
Sbjct: 435 EMLDKRIKPNWVTVVSVLRACA-CISNLEEGMKIH-ELAVNYGFEMETTVSTALMDMYMK 492

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           C   + A  +F+ M +K+V  W  +  GY  NG  ++++ +F  M     +P+ +  +  
Sbjct: 493 CFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHESMWVFRNMLSSGTRPDAIALVKI 552

Query: 357 LS-----------ACGHAGLVDKGRE----IFESMERDYSMKPKMEH------------- 388
           L+            C HA ++  G E    I  S+   Y+    +E              
Sbjct: 553 LTTISELGILQQAVCLHAFVIKNGFENNQFIGASLIEVYAKCSSIEDANKVFKGMTYKDV 612

Query: 389 --YACMVDLLGRAGSLEQALKFVLEMPE----KPNSDVWAALLSSCR----LHDDVEMAN 438
             ++ ++   G  G  E+ALK   +M      KPN+  + ++LS+C     + + + M +
Sbjct: 613 VTWSSIIAAYGFHGQGEEALKLFYQMANHSDTKPNNVTFISILSACSHSGLIKEGINMFD 672

Query: 439 IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483
           I  N+ +KL  N     Y  + + L   G+ D   ++   M ++ 
Sbjct: 673 IMVNK-YKLKPNSE--HYAIMVDLLGRMGELDMALDVINNMPMQA 714



 Score = 95.5 bits (236), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 125/268 (46%), Gaps = 16/268 (5%)

Query: 157 TCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216
           TCC S + + +     +H+Q LK  +  D  + T L   Y +     +A  +F     + 
Sbjct: 148 TCC-SKLSISQ-----LHSQCLKAGLVHDSFIVTKLNVLYARYASIHHAHKLFQETPHRT 201

Query: 217 VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETA-----RKAL-- 269
           V    +++  +  +G   +   +FR+      V      + YS+SI        RK L  
Sbjct: 202 VYLWNALLRSYCFEGEWVETLSLFRQMNNVSSVSIEERPDNYSVSIALKSCAGLRKLLLG 261

Query: 270 -EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
             +H  L K     D+ +GSAL+D+Y KCG+++DA +VF    + +V  WTS+I GY ++
Sbjct: 262 KVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYPKPDVVLWTSIISGYEQS 321

Query: 329 GNPNQALELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           G+P  AL  F  M+    V P+ VT +   SAC        GR +   ++R   +  K+ 
Sbjct: 322 GSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKLGRSVHGFVKRK-GLDNKLC 380

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEK 415
               ++ L G+ GS++ A     EM +K
Sbjct: 381 LANSLLHLYGKTGSIKNASNLFREMSDK 408


>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
 gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 145/433 (33%), Positives = 236/433 (54%), Gaps = 13/433 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H ++ K G++  + +   LL L+ KCG ++ A  +FDEL    + ++  MI GY +
Sbjct: 222 GKWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIVGYTQ 281

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  EE+L L  +       P+  T + +   S+C +    L  NLGR +H   +K   +
Sbjct: 282 NGCPEEALKLFLQKEQVAVLPNDVTIASVF--SSCSQ---LLNLNLGRSIHGLSIKLGSR 336

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK- 242
            D ++  +LVD Y K      AR VF+ + +++V+   S+IS F   G   +A E+F + 
Sbjct: 337 -DPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAFSQNGSAYEALELFHQM 395

Query: 243 ---TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIK-NVFFEDVKLGSALVDMYAKCG 298
              +V  D V   +++   + S+   +     H   +K  +   +V +G+AL+  YAKCG
Sbjct: 396 RMGSVLPDAVTLVSVLSACA-SLNALQVGSSFHAYAVKRGLLSSNVYVGTALLTFYAKCG 454

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
             + AR +FD M QK+  TW++MI GYG  GN   +L +F  M +  ++PN   F   LS
Sbjct: 455 DAESARVIFDGMDQKSTVTWSAMISGYGIQGNGRGSLSIFGDMLKAELKPNEEIFTSILS 514

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC H G++ +G  +F  + +DY++ P  +HY CMVDLL RAG L++AL F+ +MP +P+ 
Sbjct: 515 ACSHTGMIGEGWRLFTMICQDYNLVPSTKHYTCMVDLLARAGRLKEALDFIQKMPVQPDV 574

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            ++ A L  C LH   ++  +A   + +L+  D    YV + N  A+  +W  V ++RE 
Sbjct: 575 SLFGAFLHGCGLHSRFDLGELAIKRMLELHPGD-ACYYVLMCNLYASDARWSKVKQVREL 633

Query: 479 MKLRGVLKDTGCS 491
           MK RG++K  GCS
Sbjct: 634 MKQRGLMKTPGCS 646



 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 189/388 (48%), Gaps = 20/388 (5%)

Query: 48  LPSALQHYINS--DTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
           LP  L ++  S  D     +++HA++   G+  + + S KL+ L+   G L  A  +FD 
Sbjct: 3   LPPILHNFFYSLCDNINTLMEMHAYLVVQGLTRDLSCSTKLVSLYGSFGRLDLARLVFDT 62

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           +P     ++  +I  Y  N +  + +    ++    +  D   FS +LKA  C  S    
Sbjct: 63  IPHPDFLSWKVIIRWYFLNSEFRDIVGFYNRMRVCLKECDNVVFSHVLKA--CSES---- 116

Query: 166 PRNL--GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
            RN   GR VH QI+K     D  ++T LVD Y K G+   +R VFD  L++NV   +SM
Sbjct: 117 -RNFDEGRKVHCQIVKFG-NPDSFVFTGLVDMYAKCGEIECSRSVFDENLDRNVFSWSSM 174

Query: 224 ISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNV 279
           I+G++     +D   +F +  E +++  N +  G  +       AL     +H  LIK  
Sbjct: 175 IAGYVQNNLAQDGLVLFNRMRE-ELIEANQITLGILVHACKKLGALHQGKWLHGYLIKCG 233

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
                 L +AL+D+YAKCG + DAR VFD +   ++ +WT+MI GY +NG P +AL+LF 
Sbjct: 234 IELGSYLVTALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLFL 293

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
             ++  V PN VT     S+C     ++ GR I     +  S  P + +   +VD   + 
Sbjct: 294 QKEQVAVLPNDVTIASVFSSCSQLLNLNLGRSIHGLSIKLGSRDPIVTN--SLVDFYAKC 351

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSS 427
             + +  ++V E     +   W +++S+
Sbjct: 352 -QMNRDARYVFETISDRDVVAWNSIISA 378


>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 674

 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 138/442 (31%), Positives = 242/442 (54%), Gaps = 15/442 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H  + +  +     +   L+ ++LKCG +  A  +F  + +R +  +  MI GY++
Sbjct: 237 GRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFGRMERRDVITWTCMINGYIE 296

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G VE +L L R +   G RP+  T + ++ A   C   + L  N G+ +H   ++  V 
Sbjct: 297 DGDVENALELCRLMQFEGVRPNAVTIASLVSA---CGDALKL--NDGKCLHGWAIRQKVC 351

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
           +D ++ T+L+  Y K         VF      +    +++I+G +    V DA ++F   
Sbjct: 352 SDIIIETSLISMYAKCKHIDLCFRVFSGASRNHTGPWSAIIAGCVQNELVRDALDLFKRM 411

Query: 241 -RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            R+ VE +I   N+++  Y+ ++   R+ + +HC L K  F   +   + LV +Y+KCG 
Sbjct: 412 RREDVEPNIATLNSLLPAYA-TLADLRQTMNIHCYLTKTGFMSSLDAATGLVHVYSKCGT 470

Query: 300 IDDARRVFDHMQQK----NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           ++ A ++F+ +Q+K    +V  W ++I GYG +G+ + AL++F  M    V PN +TF  
Sbjct: 471 LESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTS 530

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
           AL+AC H+GLV++G  +F  M   Y    +  HY C+VDLLGRAG L++A   +  +P +
Sbjct: 531 ALNACSHSGLVEEGLTLFSFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFE 590

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
           P S +W ALL++C  H++V++  +AAN++F+L   +  G YV L+N  AA G+W  + ++
Sbjct: 591 PTSTIWGALLAACVTHENVQLGEMAANKLFELEP-ENTGNYVLLANIYAALGRWKDMEKV 649

Query: 476 REKMKLRGVLKDTGCSWVGTES 497
           R  M+  G+ K  G S +   S
Sbjct: 650 RNMMENVGLRKKPGHSTIEIRS 671



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 137/469 (29%), Positives = 240/469 (51%), Gaps = 49/469 (10%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           N L+     S L HY  + +      +H H+  TG + + +I   L + +  CG + YA 
Sbjct: 11  NALSVKQYQSLLNHYAATQSISKTKALHCHVI-TGGRVSGHILSTLSVTYALCGHIAYAR 69

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGER--PDGYTFSMILKASTC 158
           ++FDE+PQ +L +YN +I  Y+++G   +++++  ++VS G +  PDGYT+  + KA+  
Sbjct: 70  KLFDEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPFVAKAAGE 129

Query: 159 CRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI 218
            +S      +LG ++H +IL+     D  +  AL+  Y+  G+   AR VFD+M  ++VI
Sbjct: 130 LKS-----ISLGLVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKNRDVI 184

Query: 219 CSTSMISGFMSQGFVEDAEEIFRKTVEKDI------VVYNAMIEGYSISIETARKALEVH 272
              +MISG+   G++ DA  +F   V + +      +V    + G+   +E  R    VH
Sbjct: 185 SWNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRN---VH 241

Query: 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPN 332
             + +    + +++ +ALV+MY KCG++D+AR VF  M++++V TWT MI+GY ++G+  
Sbjct: 242 KLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFGRMERRDVITWTCMINGYIEDGDVE 301

Query: 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD------------Y 380
            ALEL  +MQ   V+PN VT    +SACG A  ++ G+ +     R              
Sbjct: 302 NALELCRLMQFEGVRPNAVTIASLVSACGDALKLNDGKCLHGWAIRQKVCSDIIIETSLI 361

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIA 440
           SM  K +H    +DL  R          V     + ++  W+A+++ C  ++ V      
Sbjct: 362 SMYAKCKH----IDLCFR----------VFSGASRNHTGPWSAIIAGCVQNELVR----D 403

Query: 441 ANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTG 489
           A ++FK    +     +A  N+L  A  + ++ +LR+ M +   L  TG
Sbjct: 404 ALDLFKRMRREDVEPNIATLNSLLPA--YATLADLRQTMNIHCYLTKTG 450


>gi|449523934|ref|XP_004168978.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 158/503 (31%), Positives = 250/503 (49%), Gaps = 99/503 (19%)

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL-----------VRKLV 138
           + K G +  A ++F+E+P+R + ++N M++GYL NG VE+++             +R LV
Sbjct: 162 YAKSGTMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALV 221

Query: 139 SS-----------------------GERPDGYTF---------------SMILKASTCC- 159
           S                        G+  D Y                  +  +   CC 
Sbjct: 222 SGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCD 281

Query: 160 ----RSNVPLPRNL-------GRMVHA-QILKCDVKADDVLYTALVDSYVKGGKTSYARI 207
               R NV    ++       G +V A ++    V+ D   +  ++  YV+      A  
Sbjct: 282 CGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASN 341

Query: 208 VFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS-------- 259
           +F  M E + +    MISGF   G ++ A ++F++  EK +V +N+MI GY         
Sbjct: 342 LFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGA 401

Query: 260 -------------------ISIETARKAL-------EVHCQLIKNVFFEDVKLGSALVDM 293
                               SI +A   L       ++H QL+   F  D+ + ++LV M
Sbjct: 402 MNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIH-QLVTKAFIADLPINNSLVTM 460

Query: 294 YAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           Y++CG I +AR VFD M  Q++V +W +MI GY  +G   +AL+LF +M++C VQP+Y+T
Sbjct: 461 YSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYIT 520

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
           F+  L+AC HAGL+++GR  F SM   + +KP++EHYA +VD++GR G LE+A+  +  M
Sbjct: 521 FISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSM 580

Query: 413 PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSV 472
           P +P+  VW ALL +C++H++VEMA  AA  + KL   +    YV L N  A  G+WD  
Sbjct: 581 PCEPDKAVWGALLGACKVHNNVEMARAAAEALMKLQP-ESSAPYVLLHNMYADVGRWDDA 639

Query: 473 TELREKMKLRGVLKDTGCSWVGT 495
            E+R  M+   V KD G S V +
Sbjct: 640 AEMRTMMEKNNVQKDAGYSRVDS 662



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 97/420 (23%), Positives = 181/420 (43%), Gaps = 77/420 (18%)

Query: 79  NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ--VEESLSLVRK 136
           NT    +++  ++K   +  A Q+F+E+P R + ++N M++GY+  G   VE + ++  +
Sbjct: 87  NTITWNRMITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSGYISCGGKFVERARNMFDQ 146

Query: 137 L-----VSSGERPDGYTFSMILKASTCCRSNVPLPRNL--------GRMVHAQILKCD-- 181
           +     VS      GY  S  +  +    + +P  RN+        G +++  + K    
Sbjct: 147 MPETDCVSWNTMLSGYAKSGTMDKAEELFNEMP-ERNVVSWNAMVSGYLMNGHVEKAIEF 205

Query: 182 -------------------------VKADDVL---------------YTALVDSYVKGGK 201
                                    V+A+ +L               Y  L+  Y + G 
Sbjct: 206 FKLMPKRDSASLRALVSGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGM 265

Query: 202 TSYARIVFDMM--------LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNA 253
              AR +FD +          +NVI   SMI  ++  G +  A E+F K VE+D   +N 
Sbjct: 266 AYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNT 325

Query: 254 MIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK 313
           MI GY + I   ++A  +  ++ +     D    + ++  +++ G +  A  +F  + +K
Sbjct: 326 MISGY-VQILDMKEASNLFSRMPE----PDTLSWNMMISGFSEIGSLKLAHDLFKRIPEK 380

Query: 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD--KGRE 371
           ++ +W SMI GY KN +   A+ +F  MQ    +P+  T    LSAC  AGLVD   G +
Sbjct: 381 SLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSAC--AGLVDLVLGTQ 438

Query: 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           I + + + +     + +   +V +  R G++ +A     EM  + +   W A++     H
Sbjct: 439 IHQLVTKAFIADLPINN--SLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYH 496



 Score = 85.5 bits (210), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 87/359 (24%), Positives = 154/359 (42%), Gaps = 37/359 (10%)

Query: 91  LKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFS 150
           ++ G +  A ++FD         +N MI  Y+K  ++ ++    R+L       D  +++
Sbjct: 68  IRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKA----RQLFEEMPNRDIVSWN 123

Query: 151 MILKASTCCRSN-VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVF 209
           ++L     C    V   RN+   +         + D V +  ++  Y K G    A  +F
Sbjct: 124 LMLSGYISCGGKFVERARNMFDQMP--------ETDCVSWNTMLSGYAKSGTMDKAEELF 175

Query: 210 DMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL 269
           + M E+NV+   +M+SG++  G VE A E F+   ++D     A++ G  I  +   +A 
Sbjct: 176 NEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALVSGL-IQNDKLVEAE 234

Query: 270 EVHCQLIKNVFFED-VKLGSALVDMYAKCGKIDDARRVFDHM--------QQKNVFTWTS 320
            +  Q   NV   D V   + L+  Y + G   +AR++FD +         ++NV +W S
Sbjct: 235 RILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNS 294

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD--KGREIFESMER 378
           MI  Y + G+   A ELF  M E        TF       G+  ++D  +   +F  M  
Sbjct: 295 MIMCYVRAGDIVSARELFDKMVE------RDTFSWNTMISGYVQILDMKEASNLFSRMP- 347

Query: 379 DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
               +P    +  M+      GSL+ A      +PEK     W +++S    ++D + A
Sbjct: 348 ----EPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVS-WNSMISGYEKNEDYKGA 401



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 106/255 (41%), Gaps = 42/255 (16%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP-QRTLSAYNYMIAGYL 122
           G +IH  +TK  +  +  I+  L+ ++ +CGA+  A  +FDE+  QR + ++N MI GY 
Sbjct: 436 GTQIHQLVTKAFI-ADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYA 494

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            +G   E+L L   +     +P   TF  +L A           R    MV+   +K  V
Sbjct: 495 YHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQV 554

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           +     Y ALVD   + G+   A     M L  ++ C                       
Sbjct: 555 EH----YAALVDIIGRHGQLEEA-----MSLINSMPC----------------------- 582

Query: 243 TVEKDIVVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
             E D  V+ A++    +  ++E AR A E   +L      E       L +MYA  G+ 
Sbjct: 583 --EPDKAVWGALLGACKVHNNVEMARAAAEALMKLQP----ESSAPYVLLHNMYADVGRW 636

Query: 301 DDARRVFDHMQQKNV 315
           DDA  +   M++ NV
Sbjct: 637 DDAAEMRTMMEKNNV 651


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Glycine max]
          Length = 1033

 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 156/448 (34%), Positives = 247/448 (55%), Gaps = 23/448 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH    K G+  + ++S  LL L+ +   ++   ++F  +P+    ++N  I     
Sbjct: 475 GQQIHGEGIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALAT 534

Query: 124 N-GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +   V +++    +++ +G +P+  TF  IL A +           LGR +HA ILK  V
Sbjct: 535 SEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVS-----SLSLLELGRQIHALILKHSV 589

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEK-NVICSTSMISGFMSQGFVEDAEEIFR 241
             D+ +   L+  Y K  +     I+F  M E+ + +   +MISG++  G +  A  +  
Sbjct: 590 ADDNAIENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVW 649

Query: 242 KTVEK-----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
             ++K     D  +  A +     S+ T  + +EVH   I+     +V +GSALVDMYAK
Sbjct: 650 LMMQKGQRLDDFTL--ATVLSACASVATLERGMEVHACAIRACLEAEVVVGSALVDMYAK 707

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CGKID A R F+ M  +N+++W SMI GY ++G+  +AL+LF  M++    P++VTF+G 
Sbjct: 708 CGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQLPDHVTFVGV 767

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           LSAC H GLVD+G E F+SM   Y + P++EH++CMVDLLGRAG +++  +F+  MP  P
Sbjct: 768 LSACSHVGLVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLEEFIKTMPMNP 827

Query: 417 NSDVWAALLSSCRLHD--DVEMANIAAN---EIFKLNANDRPGAYVALSNTLAAAGKWDS 471
           N+ +W  +L +C   +  + E+   AA    E+  LNA +    YV LSN  AA GKW+ 
Sbjct: 828 NALIWRTILGACCRANSRNTELGRRAAKMLIELEPLNAVN----YVLLSNMHAAGGKWED 883

Query: 472 VTELREKMKLRGVLKDTGCSWVGTESGL 499
           V E R  M+   V K+ GCSWV  + G+
Sbjct: 884 VEEARLAMRNAEVKKEAGCSWVTMKDGV 911



 Score =  126 bits (316), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 164/325 (50%), Gaps = 23/325 (7%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGA-LKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G++IH  I+K+    +  +S  L+ ++  C A +  A ++F+E+  +T +++N +I+ Y 
Sbjct: 161 GMEIHGLISKSPYASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYC 220

Query: 123 KNGQVEESL----SLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
           + G    +     S+ R+      RP+ YTF  ++  +    S V     L   + A+I 
Sbjct: 221 RRGDAISAFKLFSSMQREATELNCRPNEYTFCSLVTVAC---SLVDCGLTLLEQMLARIE 277

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
           K     D  + +ALV  + + G    A+++F+ M ++N +    ++ G   Q   E+A +
Sbjct: 278 KSSFVKDLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAK 337

Query: 239 IFRKTVEKDIVVYNAMIEGYSISI----------ETARKALEVHCQLIKNVFFED-VKLG 287
           IF++   KD+V  NA    Y++ +          E  RK  EVH  LI+N   +  + +G
Sbjct: 338 IFKEM--KDLVEINA--SSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIG 393

Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347
           +ALV++YAKC  ID+AR +F  M  K+  +W S+I G   N    +A+  F  M+   + 
Sbjct: 394 NALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMV 453

Query: 348 PNYVTFLGALSACGHAGLVDKGREI 372
           P+  + +  LS+C   G +  G++I
Sbjct: 454 PSKFSVISTLSSCASLGWIMLGQQI 478



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 109/435 (25%), Positives = 201/435 (46%), Gaps = 27/435 (6%)

Query: 8   RSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKI 67
           R  + +++H R   L    Q     L + +S  + L    L      Y +S T     ++
Sbjct: 6   RRLLHNASHARSTQLALSEQL----LHHCNSSHHHLHFPPLNLDYNRYRDSCTVEDAHQL 61

Query: 68  HAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV 127
           H  I KTG+  +      L+ + ++ G L  A ++FDE+PQ+ L +++ +++GY +NG  
Sbjct: 62  HLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGMP 121

Query: 128 EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV 187
           +E+  L R ++S+G  P+ Y     L+A   C+   P    LG  +H  I K    +D V
Sbjct: 122 DEACMLFRGIISAGLLPNHYAIGSALRA---CQELGPNMLKLGMEIHGLISKSPYASDMV 178

Query: 188 LYTALVDSYVK-GGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
           L   L+  Y         AR VF+ +  K      S+IS +  +G    A ++F  ++++
Sbjct: 179 LSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLF-SSMQR 237

Query: 247 DIVVYNAMIEGYSI-SIETARKALEVHCQLI----------KNVFFEDVKLGSALVDMYA 295
           +    N     Y+  S+ T   +L V C L           K+ F +D+ +GSALV  +A
Sbjct: 238 EATELNCRPNEYTFCSLVTVACSL-VDCGLTLLEQMLARIEKSSFVKDLYVGSALVSGFA 296

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           + G ID A+ +F+ M  +N  T   ++ G  +     +A ++F  M++  V+ N  ++  
Sbjct: 297 RYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKD-LVEINASSYAV 355

Query: 356 ALSACGHAGLVD----KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
            LSA      +     KG+E+   + R+  +   +     +V+L  +  +++ A      
Sbjct: 356 LLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQL 415

Query: 412 MPEKPNSDVWAALLS 426
           MP K ++  W +++S
Sbjct: 416 MPSK-DTVSWNSIIS 429



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 175/374 (46%), Gaps = 13/374 (3%)

Query: 64  GLKIHAHITKTG-VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G ++HA++ +   V     I   L+ L+ KC A+  A  +F  +P +   ++N +I+G  
Sbjct: 373 GQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNSIISGLD 432

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            N + EE+++    +  +G  P    FS+I   S+C      +   LG+ +H + +KC +
Sbjct: 433 HNERFEEAVACFHTMRRNGMVPS--KFSVISTLSSCASLGWIM---LGQQIHGEGIKCGL 487

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF-MSQGFVEDAEEIFR 241
             D  +  AL+  Y +       + VF +M E + +   S I     S+  V  A + F 
Sbjct: 488 DLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQAIKYFL 547

Query: 242 KTVE---KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
           + ++   K   V    I     S+       ++H  ++K+   +D  + + L+  Y KC 
Sbjct: 548 EMMQAGWKPNRVTFINILSAVSSLSLLELGRQIHALILKHSVADDNAIENTLLAFYGKCE 607

Query: 299 KIDDARRVFDHM-QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           +++D   +F  M ++++  +W +MI GY  NG  ++A+ L  +M +   + +  T    L
Sbjct: 608 QMEDCEIIFSRMSERRDEVSWNAMISGYIHNGILHKAMGLVWLMMQKGQRLDDFTLATVL 667

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           SAC     +++G E+     R   ++ ++   + +VD+  + G ++ A +F   MP + N
Sbjct: 668 SACASVATLERGMEVHACAIRA-CLEAEVVVGSALVDMYAKCGKIDYASRFFELMPVR-N 725

Query: 418 SDVWAALLSSCRLH 431
              W +++S    H
Sbjct: 726 IYSWNSMISGYARH 739



 Score = 72.4 bits (176), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 59/225 (26%), Positives = 103/225 (45%), Gaps = 9/225 (4%)

Query: 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMID 323
           T   A ++H Q+ K     DV   + LV+++ + G +  A+++FD M QKN+ +W+ ++ 
Sbjct: 54  TVEDAHQLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVS 113

Query: 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG--LVDKGREIFESMERDYS 381
           GY +NG P++A  LF  +    + PN+     AL AC   G  ++  G EI   + +   
Sbjct: 114 GYAQNGMPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPY 173

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS-CRLHDDVEMANIA 440
               +     M      + S++ A +   E+  K ++  W +++S  CR  D +    + 
Sbjct: 174 ASDMVLSNVLMSMYSHCSASIDDARRVFEEIKMKTSAS-WNSIISVYCRRGDAISAFKLF 232

Query: 441 AN---EIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
           ++   E  +LN   RP  Y   S    A    D    L E+M  R
Sbjct: 233 SSMQREATELNC--RPNEYTFCSLVTVACSLVDCGLTLLEQMLAR 275


>gi|297808809|ref|XP_002872288.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318125|gb|EFH48547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 690

 Score =  251 bits (641), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 148/438 (33%), Positives = 247/438 (56%), Gaps = 18/438 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH    K   + +  ++  L+ ++ +C  L+ A ++F ++ +++L A+N MI GY+ 
Sbjct: 226 GKEIHRKYLKKEFELDEYVNSALVDMYGRCDFLEMAREVFQQMRRKSLVAWNSMIRGYVA 285

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL--GRMVHAQILKCD 181
            G  +  + L+ +++  G RP   T + IL A  C RS     RNL  G+ VH  +++  
Sbjct: 286 RGDSKSCVELLNRMIIEGTRPSQTTLTSILMA--CSRS-----RNLLHGKFVHGYVIRSV 338

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS-MISGFMSQGFVEDAEEIF 240
           V AD  +  +L+D Y K G+   A  VF +  +K+V+ S + MISG++S G    A +++
Sbjct: 339 VDADIYINCSLIDLYFKCGEVKLAETVF-LKTQKDVVESWNVMISGYVSVGNWFKAVDVY 397

Query: 241 RKTV----EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
            + V    + DIV + +++   S  +    K  ++H  + ++    D  L SAL+DMY+K
Sbjct: 398 DQMVSVGVQPDIVTFTSVLSTCS-QLAALEKGKQIHLSISESRLETDELLLSALLDMYSK 456

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG + +A R+F+ + +K+V +WT MI  YG +G P +AL  F  MQ+  V+P+ VTFL  
Sbjct: 457 CGNVKEASRIFNSIPKKDVVSWTVMISAYGSHGQPREALYHFDEMQKFGVKPDGVTFLAV 516

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-K 415
           LSACGHAGL+D+G + F  M   Y ++  +E Y+C++D+LGRAG L +A   + + PE +
Sbjct: 517 LSACGHAGLIDEGVKYFSQMRSKYGIEASIEQYSCLIDILGRAGRLLEAYGILQQKPETR 576

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
            N+++ + L  +C LH D  +    A  + +   +D    Y  L N  A+   WD+   +
Sbjct: 577 DNAELLSTLFCACCLHRDHLLGYTIAKLLVEKYPDD-ASTYTVLFNLYASGESWDAAKRV 635

Query: 476 REKMKLRGVLKDTGCSWV 493
           R KMK  G+ K  GCSW+
Sbjct: 636 RLKMKEVGMRKKPGCSWI 653



 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 121/497 (24%), Positives = 240/497 (48%), Gaps = 24/497 (4%)

Query: 7   IRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSN-PLT---ATSLPSALQHYINSDTPF 62
           IRS V+    N   +    N  F   L+ +  L N P+    + + P+ ++ Y      F
Sbjct: 66  IRSDVY--IWNSLVSGYSKNSMFHDTLKVFKRLLNCPICVPDSFTYPNVIKAYGALGREF 123

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
            G  IH  + K+G   +  ++  L+ ++ K    + + Q+FDE+P+R ++++N +I+ + 
Sbjct: 124 LGRMIHTVVVKSGHVCDVVVASSLVGMYAKFNLFEDSVQVFDEMPERDVASWNTVISSFY 183

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           + G  E++L L  ++  S   P+  + ++ + A   C   + L R  G+ +H + LK + 
Sbjct: 184 QRGDAEKALELFGRMERSDFEPNSVSITVAISA---CSRLLCLER--GKEIHRKYLKKEF 238

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           + D+ + +ALVD Y +      AR VF  M  K+++   SMI G++++G  +   E+  +
Sbjct: 239 ELDEYVNSALVDMYGRCDFLEMAREVFQQMRRKSLVAWNSMIRGYVARGDSKSCVELLNR 298

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALE---VHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            + +        +    ++   +R  L    VH  +I++V   D+ +  +L+D+Y KCG+
Sbjct: 299 MIIEGTRPSQTTLTSILMACSRSRNLLHGKFVHGYVIRSVVDADIYINCSLIDLYFKCGE 358

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +  A  VF   Q+  V +W  MI GY   GN  +A++++  M    VQP+ VTF   LS 
Sbjct: 359 VKLAETVFLKTQKDVVESWNVMISGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVLST 418

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C     ++KG++I  S+  +  ++      + ++D+  + G++++A +    +P+K   D
Sbjct: 419 CSQLAALEKGKQIHLSIS-ESRLETDELLLSALLDMYSKCGNVKEASRIFNSIPKK---D 474

Query: 420 V--WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS----VT 473
           V  W  ++S+   H     A    +E+ K         ++A+ +    AG  D      +
Sbjct: 475 VVSWTVMISAYGSHGQPREALYHFDEMQKFGVKPDGVTFLAVLSACGHAGLIDEGVKYFS 534

Query: 474 ELREKMKLRGVLKDTGC 490
           ++R K  +   ++   C
Sbjct: 535 QMRSKYGIEASIEQYSC 551



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 102/397 (25%), Positives = 184/397 (46%), Gaps = 28/397 (7%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           + ++ L S L+   N+ +      +H  I   G++ +  +   L+ ++  C     A  +
Sbjct: 1   MESSKLLSLLRECTNTKSLRQAKLVHQRILTVGLRSDVVLCKSLINVYFACKDHCSARLV 60

Query: 103 FDELPQRT-LSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCR 160
           F+ +  R+ +  +N +++GY KN    ++L + ++L++     PD +T+  ++KA     
Sbjct: 61  FENIDIRSDVYIWNSLVSGYSKNSMFHDTLKVFKRLLNCPICVPDSFTYPNVIKAYG--- 117

Query: 161 SNVPLPRN-LGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVIC 219
               L R  LGRM+H  ++K     D V+ ++LV  Y K      +  VFD M E++V  
Sbjct: 118 ---ALGREFLGRMIHTVVVKSGHVCDVVVASSLVGMYAKFNLFEDSVQVFDEMPERDVAS 174

Query: 220 STSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETA----------RKAL 269
             ++IS F  +G  E A E+F +    D        E  S+SI  A           +  
Sbjct: 175 WNTVISSFYQRGDAEKALELFGRMERSD-------FEPNSVSITVAISACSRLLCLERGK 227

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
           E+H + +K  F  D  + SALVDMY +C  ++ AR VF  M++K++  W SMI GY   G
Sbjct: 228 EIHRKYLKKEFELDEYVNSALVDMYGRCDFLEMAREVFQQMRRKSLVAWNSMIRGYVARG 287

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
           +    +EL   M     +P+  T    L AC  +  +  G+ +   + R   +   +   
Sbjct: 288 DSKSCVELLNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFVHGYVIRSV-VDADIYIN 346

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
             ++DL  + G ++ A    L+  +K   + W  ++S
Sbjct: 347 CSLIDLYFKCGEVKLAETVFLK-TQKDVVESWNVMIS 382



 Score = 93.6 bits (231), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 73/277 (26%), Positives = 143/277 (51%), Gaps = 18/277 (6%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           + T+L S L     S    +G  +H ++ ++ V  +  I+  L+ L+ KCG +K A  +F
Sbjct: 307 SQTTLTSILMACSRSRNLLHGKFVHGYVIRSVVDADIYINCSLIDLYFKCGEVKLAETVF 366

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
            +  +  + ++N MI+GY+  G   +++ +  ++VS G +PD  TF+ +L   + C    
Sbjct: 367 LKTQKDVVESWNVMISGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVL---STCSQLA 423

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
            L +  G+ +H  I +  ++ D++L +AL+D Y K G    A  +F+ + +K+V+  T M
Sbjct: 424 ALEK--GKQIHLSISESRLETDELLLSALLDMYSKCGNVKEASRIFNSIPKKDVVSWTVM 481

Query: 224 ISGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIE--GYSISIETARKALEVHCQLIK 277
           IS + S G   +A    +E+ +  V+ D V + A++   G++  I+   K      Q+  
Sbjct: 482 ISAYGSHGQPREALYHFDEMQKFGVKPDGVTFLAVLSACGHAGLIDEGVKYFS---QMRS 538

Query: 278 NVFFE-DVKLGSALVDMYAKCGKIDDARRVFDHMQQK 313
               E  ++  S L+D+  + G++ +A   +  +QQK
Sbjct: 539 KYGIEASIEQYSCLIDILGRAGRLLEA---YGILQQK 572


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  251 bits (641), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 150/426 (35%), Positives = 235/426 (55%), Gaps = 45/426 (10%)

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
           A++   QM +E  +  +  ++  I+GY + G   E+L + R+++SSG +P+  T   +L 
Sbjct: 314 AVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLS 373

Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKC-------DVKA-----DDVLYTALVDSYVKGGKT 202
               C S       +G ++H + + C       D++      ++++   L+D Y K  K 
Sbjct: 374 G---CAS-------VGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKV 423

Query: 203 SYARIVFDMM--LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKD-------IVVYNA 253
             AR +FD +   E++V+  T MI G+   G    A E+  +  E+D         +  A
Sbjct: 424 DIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTISCA 483

Query: 254 MIEGYSISIETARKALEVHCQLIKN------VFFEDVKLGSALVDMYAKCGKIDDARRVF 307
           ++   S++  +  K  ++H   ++N      +F     + + L+DMYAKCG I DAR VF
Sbjct: 484 LVACASLAALSIGK--QIHAYALRNQQNAVPLF-----VSNCLIDMYAKCGDIGDARLVF 536

Query: 308 DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367
           D+M +KN  TWTS++ GYG +G   +AL +F  M+    + + VT L  L AC H+G++D
Sbjct: 537 DNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSGMID 596

Query: 368 KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
           +G E F  M+ D+ + P  EHYAC+VDLLGRAG L  AL+ + EMP +P   VW ALLS 
Sbjct: 597 QGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVALLSC 656

Query: 428 CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487
           CR+H  VE+   AA +I +L +N+  G+Y  LSN  A AG+W  VT +R  M+ +G+ K 
Sbjct: 657 CRIHGKVELGEYAAKKITELASNN-DGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIKKR 715

Query: 488 TGCSWV 493
            GCSWV
Sbjct: 716 PGCSWV 721



 Score =  115 bits (288), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 114/460 (24%), Positives = 186/460 (40%), Gaps = 78/460 (16%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNY--MIAGYLKN 124
           IH  +   G+    N++  L+  ++  G L +A  +    P      Y++  +I  Y  N
Sbjct: 47  IHQKLLSFGIL-TLNLTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNN 105

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKAS------TCCRSNVPLPRNLGRMVHAQIL 178
           G+  + LS    + S    PD YTF  + KA        C  S+  L R  G M      
Sbjct: 106 GRANKCLSSFCLMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFM------ 159

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
                ++  +  ALV  Y + G  S AR VFD M   +V+   S+I  +   G  + A E
Sbjct: 160 -----SNVFVGNALVAMYSRCGSLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALE 214

Query: 239 IFRKTVEK------DIVVYNAMIEGYSISIETARK---ALEVHCQLIKNVFFEDVKLGSA 289
           +F K   +      DI + N +    S+   +  K      V  ++I+N+F     +G+ 
Sbjct: 215 MFSKMTNEFGFRPDDITLVNVLPPCASVGTRSLGKQFHGFAVTSEMIQNMF-----VGNC 269

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE------ 343
           LVDMYAK G +D+A  VF +M  K+V +W +M+ GY + G    A+ LF  MQE      
Sbjct: 270 LVDMYAKFGMMDEANTVFSNMPVKDVVSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMD 329

Query: 344 ----------------------CC-------VQPNYVTFLGALSACGHAGLVDKGREIFE 374
                                  C       ++PN VT +  LS C   G +  G+EI  
Sbjct: 330 VVTWSAAISGYAQRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEI-H 388

Query: 375 SMERDYSMKPKMEHYA-------CMVDLLGRAGSLEQALKFVLEM-PEKPNSDVWAALLS 426
                Y M  +   +         ++D+  +   ++ A      + P++ +   W  ++ 
Sbjct: 389 CYAIKYPMDLRKNGHGDENMVINQLIDMYAKCKKVDIARAMFDSLSPKERDVVTWTVMIG 448

Query: 427 SCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
               H D   A    +E+F+ +   RP A+      +A A
Sbjct: 449 GYSQHGDANKALELLSEMFEEDCQTRPNAFTISCALVACA 488



 Score = 87.8 bits (216), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 151/347 (43%), Gaps = 56/347 (16%)

Query: 35  NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           N  +L + L+  +   AL H    +   Y +K    + K G      +  +L+ ++ KC 
Sbjct: 364 NEVTLISVLSGCASVGALMH--GKEIHCYAIKYPMDLRKNGHGDENMVINQLIDMYAKCK 421

Query: 95  ALKYAGQMFDELP--QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG--ERPDGYTFS 150
            +  A  MFD L   +R +  +  MI GY ++G   ++L L+ ++       RP+ +T S
Sbjct: 422 KVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRPNAFTIS 481

Query: 151 MILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT-ALVDSYVKGGKTSYARIVF 209
             L A   C S   L  ++G+ +HA  L+    A  +  +  L+D Y K G    AR+VF
Sbjct: 482 CALVA---CASLAAL--SIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDARLVF 536

Query: 210 DMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL 269
           D M+EKN +  TS+++G+   G+ E+A  IF                      E  R   
Sbjct: 537 DNMMEKNEVTWTSLMTGYGMHGYGEEALGIFE---------------------EMRRIGF 575

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYA--KCGKIDDARRVFDHMQQKNVFT-----WTSMI 322
           ++          + V L   LV +YA    G ID     F+ M+     +     +  ++
Sbjct: 576 KL----------DGVTL---LVVLYACSHSGMIDQGMEYFNRMKTDFGVSPGPEHYACLV 622

Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKG 369
           D  G+ G  N AL L   ++E  ++P  V ++  LS C   G V+ G
Sbjct: 623 DLLGRAGRLNAALRL---IEEMPMEPPPVVWVALLSCCRIHGKVELG 666


>gi|449460752|ref|XP_004148109.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Cucumis sativus]
          Length = 784

 Score =  251 bits (641), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 147/449 (32%), Positives = 251/449 (55%), Gaps = 23/449 (5%)

Query: 52  LQHYINSDTPFYGLKIHAHITK-----TGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           L  + NSD  F G   HA I K     +G+  N      LL ++ K G L  A ++F   
Sbjct: 348 LMGFGNSDRIFEGKAFHARILKQCCALSGITHNA-----LLSMYCKFGHLGTANKIFHSF 402

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
             ++   ++ MI GY   GQ E+ +S +R+++  G  PD    S++   S+C +      
Sbjct: 403 -HKSSEDWSTMILGYSNMGQKEKCISFLREMLLLGREPD--LNSLVSVISSCSQVGAI-- 457

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
            N+GR +H   +K  +  +  +  +L+D Y K G  +    +F   L+++VI   ++IS 
Sbjct: 458 -NIGRSIHCYAIKNSIIENVSVANSLMDMYGKSGHVTATWRIFHRTLQRDVISWNTLISS 516

Query: 227 FMSQGFVEDAEEIFRKTVEKDIV---VYNAMIEGYSISIETARKALEVHCQLIKNVFFED 283
           +   G + +A  +F K V++ +    V   ++      + +  +  ++H  + +N F  +
Sbjct: 517 YKQSGILAEAIILFDKMVKEKVYPNKVTCIIVLSACAHLASLDEGEKIHQYIKENGFESN 576

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
           + + +AL+DMYAKCG+++ +R++F+  ++++V  W  MI  YG +G+   A+E+F +M+E
Sbjct: 577 ITIRTALIDMYAKCGELETSRKLFNSTEERDVILWNVMISNYGMHGHVESAMEIFQLMEE 636

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE 403
             ++PN  TFL  LSAC H G V +GR +F+ M++ Y ++P ++HYA ++DLLGR+GSLE
Sbjct: 637 SNIKPNAQTFLSLLSACNHTGHVLEGRHLFDRMQK-YGIEPSLKHYASIIDLLGRSGSLE 695

Query: 404 QALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA-NIAANEIFKLNANDRPGAYVALSNT 462
            A   VL MP  P+  VW +LLS+C++H++ E+   +A   I     ND  G Y+ LS+ 
Sbjct: 696 AAEALVLSMPITPDGTVWGSLLSACKIHNEFEVGVRLARYAIESDPKND--GYYIILSDL 753

Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCS 491
            +  G+WD V ++R+ MK RGV K  G S
Sbjct: 754 YSCLGRWDEVEKVRDMMKKRGVEKRAGWS 782



 Score = 85.1 bits (209), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 97/428 (22%), Positives = 184/428 (42%), Gaps = 51/428 (11%)

Query: 9   SSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIH 68
           SS F+S  + HY    PN      L ++ S  N LT  SL                L+ H
Sbjct: 26  SSTFTSLSDSHY----PNNC----LHSFFSKPN-LTFQSL----------------LQFH 60

Query: 69  AHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVE 128
           + I  TG   N   + KL+  +       ++  +F  +  + +  +N +I  +  NG  +
Sbjct: 61  SLIITTGNSNNVFFATKLMAFYAYHRKPAFSTHLFRLIHSKDIFLWNSIIQSHFSNGDYQ 120

Query: 129 ESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV-KADDV 187
            +     ++ +S   P+ +T  M++  STC      +  N G  +H    K  +   +  
Sbjct: 121 RAFDFYLQMRASSSLPNQFTVPMVV--STCAE---LMMFNHGMNIHGLTSKLGLFVGNSA 175

Query: 188 LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE------IFR 241
           + ++ +  Y K G    A I+F  +  K+V+  T++I G+     V++ E       +F 
Sbjct: 176 IGSSFIYMYSKCGHVESASIMFSEITVKDVVTWTALIVGY-----VQNNESGRGLKCLFE 230

Query: 242 KTVEKDIVVYNAMIEGYS--ISIETARKALEVHCQLIKNVF--FEDVKLGSALVDMYAKC 297
                    Y  +  G+   + ++   +   +H   +KN F  FE VK  S ++ MY++C
Sbjct: 231 MHRIGGTPNYKTIGSGFQACVDLDALVEGKCLHGLALKNGFLCFEVVK--STILSMYSRC 288

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G  ++A R F  + QK++ +WTS+I  + K G  ++ L LF  MQ   + P+ +     L
Sbjct: 289 GSPEEAYRCFCKLDQKDLISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCML 348

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
              G++  + +G+     + +       + H A ++ +  + G L  A K +     K +
Sbjct: 349 MGFGNSDRIFEGKAFHARILKQCCALSGITHNA-LLSMYCKFGHLGTANK-IFHSFHKSS 406

Query: 418 SDVWAALL 425
            D W+ ++
Sbjct: 407 ED-WSTMI 413



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 62/318 (19%), Positives = 130/318 (40%), Gaps = 35/318 (11%)

Query: 174 HAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFV 233
           H+ I+      +    T L+  Y    K +++  +F ++  K++    S+I    S G  
Sbjct: 60  HSLIITTGNSNNVFFATKLMAFYAYHRKPAFSTHLFRLIHSKDIFLWNSIIQSHFSNGDY 119

Query: 234 EDAEEIFRK-----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIK-NVFFEDVKLG 287
           + A + + +     ++     V   M+      +      + +H    K  +F  +  +G
Sbjct: 120 QRAFDFYLQMRASSSLPNQFTV--PMVVSTCAELMMFNHGMNIHGLTSKLGLFVGNSAIG 177

Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347
           S+ + MY+KCG ++ A  +F  +  K+V TWT++I GY +N    + L+    M      
Sbjct: 178 SSFIYMYSKCGHVESASIMFSEITVKDVVTWTALIVGYVQNNESGRGLKCLFEMHRIGGT 237

Query: 348 PNYVTFLGALSACG-----------HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           PNY T      AC            H   +  G   FE ++            + ++ + 
Sbjct: 238 PNYKTIGSGFQACVDLDALVEGKCLHGLALKNGFLCFEVVK------------STILSMY 285

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456
            R GS E+A +   ++ +K +   W ++++   +H    + +   +  +++ A++     
Sbjct: 286 SRCGSPEEAYRCFCKLDQK-DLISWTSIIA---VHSKFGLMSECLHLFWEMQASEIIPDE 341

Query: 457 VALSNTLAAAGKWDSVTE 474
           + +S  L   G  D + E
Sbjct: 342 IVISCMLMGFGNSDRIFE 359


>gi|255574750|ref|XP_002528283.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532320|gb|EEF34121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 602

 Score =  251 bits (641), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 156/521 (29%), Positives = 263/521 (50%), Gaps = 71/521 (13%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVK-PNTNISIKLLILHLKCGALKYAGQ 101
           L + +L   LQ   N+ +   G  +H H+  TG+K PNT ++  L+ ++ KCG    A +
Sbjct: 48  LPSKTLAYLLQQCANTKSLKLGKWVHLHLKVTGLKRPNTFLANHLINMYSKCGDYPSAYK 107

Query: 102 MFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKA---STC 158
           +FDE+  R L ++N M++GY K G+++ +    RKL       D  +++ ++ A   S  
Sbjct: 108 VFDEMSTRNLYSWNGMLSGYAKLGKIKPA----RKLFDKMPEKDVVSWNTMVIAYAKSGF 163

Query: 159 CRSNVPLPRNLGRM---------------------------VHAQILKCDVKADDVLYTA 191
           C   +   R L R+                            H Q+L     ++ V+ ++
Sbjct: 164 CNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELSKQAHGQVLVAGFLSNLVISSS 223

Query: 192 LVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVY 251
           ++D+Y K  +   AR +FD M+ ++V+  T+M+SG+   G VE A E+F    EK+ V +
Sbjct: 224 VLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQWGDVEAARELFDLMPEKNPVAW 283

Query: 252 NAMIEGY----------------------------------SISIETARKALEVHCQLIK 277
            ++I GY                                  S SI +     ++H  LI+
Sbjct: 284 TSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCLCASASIASLNHGKQIHGYLIR 343

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNGNPNQALE 336
                +  + S+L+DMY+KCG ++  R VFD M  K +V  W ++I    ++G   +A++
Sbjct: 344 TNIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKWDVVLWNTIISSLAQHGRGQEAIQ 403

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           +F  M    ++P+ +T +  L+AC H+GLV +G  ++ES+   + + P  EHYAC++DLL
Sbjct: 404 MFDDMVRLGMKPDRITLIVLLNACSHSGLVQEGLRLYESITSCHGVIPNQEHYACLIDLL 463

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456
           GRAG  +  +  + +MP KPN ++W ALL  CR+H ++E     A +I +L+      AY
Sbjct: 464 GRAGHFDTLMNQLEKMPCKPNDEIWNALLGVCRMHGNIEFGREVAEKIIELDPQS-SAAY 522

Query: 457 VALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTES 497
           V LS+  AA G+W+ V  +R+ M  R V KD   SW+  E+
Sbjct: 523 VLLSSIHAAVGRWELVENVRQLMNERHVRKDRAISWIEIEN 563



 Score =  114 bits (284), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/410 (23%), Positives = 176/410 (42%), Gaps = 72/410 (17%)

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            GQ+ +++S +  L  +G R    T + +L+     +S       LG+ VH  +    +K
Sbjct: 28  QGQLFQAISSLGLLSRNGIRLPSKTLAYLLQQCANTKS-----LKLGKWVHLHLKVTGLK 82

Query: 184 -ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
             +  L   L++ Y K G    A  VFD M  +N+     M+SG+   G ++ A ++F K
Sbjct: 83  RPNTFLANHLINMYSKCGDYPSAYKVFDEMSTRNLYSWNGMLSGYAKLGKIKPARKLFDK 142

Query: 243 TVEKDIVVYNAMIEGYS------------------------------ISIETARKALEV- 271
             EKD+V +N M+  Y+                              ++I    K LE+ 
Sbjct: 143 MPEKDVVSWNTMVIAYAKSGFCNDALRFYRELRRLGIGYNEYSFAGLLNICVKVKELELS 202

Query: 272 ---HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
              H Q++   F  ++ + S+++D YAKC ++ DARR+FD M  ++V  WT+M+ GY + 
Sbjct: 203 KQAHGQVLVAGFLSNLVISSSVLDAYAKCSEMGDARRLFDEMIIRDVLAWTTMVSGYAQW 262

Query: 329 G---------------NP----------------NQALELFCMMQECCVQPNYVTFLGAL 357
           G               NP                ++ALELF  M    ++P+  TF   L
Sbjct: 263 GDVEAARELFDLMPEKNPVAWTSLIAGYARHDLGHKALELFTKMMALNIRPDQFTFSSCL 322

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
            A      ++ G++I   + R  +++P     + ++D+  + G LE        M +K +
Sbjct: 323 CASASIASLNHGKQIHGYLIRT-NIRPNTIVVSSLIDMYSKCGCLEVGRLVFDLMGDKWD 381

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG 467
             +W  ++SS   H   + A    +++ +L         + L N  + +G
Sbjct: 382 VVLWNTIISSLAQHGRGQEAIQMFDDMVRLGMKPDRITLIVLLNACSHSG 431


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  251 bits (640), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 153/449 (34%), Positives = 248/449 (55%), Gaps = 25/449 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H    K G+  + ++S  LL L+ +CG +K   + F  +      ++N +I G L 
Sbjct: 509 GEQLHCEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLI-GALA 567

Query: 124 NGQ------VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQI 177
           + +      VE  L ++R    +G  P+  TF  IL A     S++ L   LG+ +HA +
Sbjct: 568 DSEPSMLEAVESFLVMMR----AGWDPNRVTFITILAAV----SSLSL-HELGKQIHALV 618

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK-NVICSTSMISGFMSQGFVEDA 236
           LK +V AD  +  AL+  Y K G   Y   +F  M ++ + +   SMISG++    +  A
Sbjct: 619 LKRNVAADTAIENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHNELLPKA 678

Query: 237 EEIFRKTVEK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVD 292
            ++    ++K    D   +  ++   + ++ T  + +EVH   ++     D+ +GSALVD
Sbjct: 679 MDMVWFMMQKGQRLDGFTFATVLSACA-TVATLERGMEVHGCSVRACLESDIVIGSALVD 737

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           MYAKCG+ID A R F+ M  +N+++W SMI GY ++G+  ++L+LF  M+     P++VT
Sbjct: 738 MYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQGPLPDHVT 797

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
           F+G LSAC HAGLV++G   F+SM   Y + P+MEH++CMVDLLGR G L +   F+ +M
Sbjct: 798 FVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKMEDFLNQM 857

Query: 413 PEKPNSDVWAALLSSCRLHD--DVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
           P KPN  +W  +L +C   +  +  +   AA  + ++   +    Y+ LSN  A+ GKWD
Sbjct: 858 PVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVN-YILLSNMYASGGKWD 916

Query: 471 SVTELREKMKLRGVLKDTGCSWVGTESGL 499
            V + R  M+   V K+ GCSWV  + G+
Sbjct: 917 DVAKTRVAMRKAFVKKEAGCSWVTMKDGV 945



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 94/323 (29%), Positives = 164/323 (50%), Gaps = 17/323 (5%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKC-GALKYAGQMFDELPQRTLSAYNYMIAGY 121
           +G++IH  ++KT    +   S  L+ ++    G + YA + FD +  R L + N MI+ Y
Sbjct: 194 FGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVY 253

Query: 122 LKNGQVEESL----SLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQI 177
            + G    +     ++ ++++  G +P+ YTF  ++ A TC  +N  L   L   +  ++
Sbjct: 254 CQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLISA-TCSLANSGLV--LLEQLLTRV 310

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
            K     D  + +ALV  + K G   YA+ +F  M  +NV+    +I G + Q   E+A 
Sbjct: 311 EKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAV 370

Query: 238 EIF---RKTVEKD----IVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE-DVKLGSA 289
           E+F   + +VE +    +++  A  E + +     RK  EVH  LI++      + +G+ 
Sbjct: 371 ELFMEMKDSVELNPNSYMIILTAFPE-FHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNG 429

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349
           L++MYAKCG I+DA  VF  M  K+  TW SMI G  +N    +A++ F  M+   + P+
Sbjct: 430 LINMYAKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPS 489

Query: 350 YVTFLGALSACGHAGLVDKGREI 372
             T + ALS+C   G +  G ++
Sbjct: 490 NFTMISALSSCASLGWISVGEQL 512



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 204/457 (44%), Gaps = 49/457 (10%)

Query: 9   SSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLP----------SALQHY-IN 57
           SSVF  T  R  + +P +  +P     ++  +NPL  +S+P          S L H  + 
Sbjct: 17  SSVF--TFPRSASSIPHSHHYPLL---FNPFTNPLPPSSIPLQVLVDLYKSSQLHHNPVQ 71

Query: 58  SDTPFYGL--------------KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
            D     L              ++H  + K G   +  +   L+ ++ + G L    ++F
Sbjct: 72  HDEKIESLAQRYRYSCGSKDAEELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVF 131

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           DE+P R L +++ +I+GY +N    E+  L RK+VS G  P+ Y F  +++A   C+   
Sbjct: 132 DEMPLRNLVSWSCLISGYTRNRMPNEACELFRKMVSDGFMPNHYAFGSVIRA---CQECG 188

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKG-GKTSYARIVFDMMLEKNVICSTS 222
                 G  +H  + K     D      L+  Y    G   YAR  FD +  +N++   S
Sbjct: 189 EYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNS 248

Query: 223 MISGFMSQGFVEDAEEIF---RKTVEKDIVVYNAMIEGYSIS--IETARKALEVHCQLIK 277
           MIS +  +G    A +IF   +K V  D +  N    G  IS     A   L +  QL+ 
Sbjct: 249 MISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLT 308

Query: 278 NV----FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
            V    F  D+ +GSALV  +AK G I  A+ +F  M  +NV +   +I G  +     +
Sbjct: 309 RVEKSGFLHDLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEE 368

Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVD----KGREIFESMERDYSMKPKMEHY 389
           A+ELF  M++  V+ N  +++  L+A     +++    KG E+   + R   +  ++   
Sbjct: 369 AVELFMEMKD-SVELNPNSYMIILTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIG 427

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
             ++++  + G++  A   V  + +  +S  W ++++
Sbjct: 428 NGLINMYAKCGAINDAC-VVFRLMDNKDSVTWNSMIT 463


>gi|115459414|ref|NP_001053307.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|32482936|emb|CAE02340.1| OSJNBb0072M01.1 [Oryza sativa Japonica Group]
 gi|38345689|emb|CAD41109.2| OSJNBb0070J16.5 [Oryza sativa Japonica Group]
 gi|113564878|dbj|BAF15221.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|215768472|dbj|BAH00701.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218195211|gb|EEC77638.1| hypothetical protein OsI_16630 [Oryza sativa Indica Group]
          Length = 1027

 Score =  251 bits (640), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 147/437 (33%), Positives = 240/437 (54%), Gaps = 14/437 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH    K G+  N  +   L+ L+ K G ++ + ++F ++   ++   N +IAG+++
Sbjct: 546 GKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQ 605

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N   +E++ L ++++  G +P   TFS IL  S C  S   L   +G+ VH   LK  V 
Sbjct: 606 NNNEDEAIQLFQQVLKDGLKPSSVTFSSIL--SGCSGS---LNSAIGKQVHCYTLKSGVL 660

Query: 184 ADDVLY-TALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
            DD L   +L   Y+K      A +++ +M   KN+   T++ISG+   G+ + +   F 
Sbjct: 661 YDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFW 720

Query: 242 K----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           +     V  D   + ++++  S  +       E+H  + K+ F       SAL+DMY+KC
Sbjct: 721 RMRHCNVRSDEATFASVLKACS-DVTAFADGKEIHGLITKSGFGSYETATSALIDMYSKC 779

Query: 298 GKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           G +  +   F  ++ K ++  W SMI G+ KNG  ++AL LF  M+E  ++P+ VTFLG 
Sbjct: 780 GDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEVTFLGV 839

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           L AC H+GL+ +GR  F SM + Y + P+++HYAC +DLLGR G L++A + + ++P +P
Sbjct: 840 LIACTHSGLISEGRHFFGSMRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQLPFRP 899

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
           +  VWA  L++CR+H D E   IAA ++ +L        YV LS+  AA G W      R
Sbjct: 900 DGVVWATYLAACRMHKDEERGKIAARKLVELEPQ-YSSTYVLLSSLHAATGNWAEAKVTR 958

Query: 477 EKMKLRGVLKDTGCSWV 493
           E M+ +GV K  GCSW+
Sbjct: 959 ESMREKGVAKFPGCSWI 975



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 186/392 (47%), Gaps = 20/392 (5%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           T ++  S L    N      G ++HA     G+  N  +   L+ L+ KCG    A  +F
Sbjct: 324 TRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVF 383

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           D   ++ +  +N M+ G+++N   EE++ + + ++    + D +TF  IL A T   S  
Sbjct: 384 DLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFY 443

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
                LG+ VH   +K  +     +  A +D Y K G    A+ +F ++  K+ I   ++
Sbjct: 444 -----LGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNAL 498

Query: 224 ISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
             G       E+A  + ++     +  D V ++  I   S +I       ++HC  IK  
Sbjct: 499 TVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACS-NIRATETGKQIHCLAIKYG 557

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
              +  +GS+L+D+Y+K G ++ +R++F  +   ++    ++I G+ +N N ++A++LF 
Sbjct: 558 ICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQ 617

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACM--VDLLG 397
            + +  ++P+ VTF   LS C  +     G+++       Y++K  + +   +  V L G
Sbjct: 618 QVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQV-----HCYTLKSGVLYDDTLLGVSLAG 672

Query: 398 ---RAGSLEQALKFVLEMPEKPNSDVWAALLS 426
              ++  LE A K + EMP+  N   W A++S
Sbjct: 673 IYLKSKMLEDANKLLTEMPDHKNLFEWTAIIS 704



 Score =  108 bits (270), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 154/376 (40%), Gaps = 75/376 (19%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +H  I + G      +   L+ L+ K G + YA        +R   A + +++ + ++G 
Sbjct: 78  LHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSGS 137

Query: 127 VEESLSLVRKL-VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
             + L   R +  ++G RPD +  +++L  S C R  V      GR VH  ++K    + 
Sbjct: 138 PGDVLGAFRYIRCTAGGRPDQFGLAVVL--SACSRVGV---LAYGRQVHCDVVKSGFSSS 192

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMI--------------------- 224
                ALVD Y K G    AR VFD +   + IC +SMI                     
Sbjct: 193 VFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDK 252

Query: 225 --------------SGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS----------- 259
                         S   S G ++ A  + +K      V +NA+I G++           
Sbjct: 253 MGSAPDQVTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGL 312

Query: 260 -------------------ISIETARKAL----EVHCQLIKNVFFEDVKLGSALVDMYAK 296
                              +S     KA     ++H   + +    +V +GS+L+++YAK
Sbjct: 313 YKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAK 372

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG   DA+ VFD   +KN+  W +M+ G+ +N  P +A+ +F  M    +Q +  TF+  
Sbjct: 373 CGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSI 432

Query: 357 LSACGHAGLVDKGREI 372
           L AC +      G+++
Sbjct: 433 LGACTYLSSFYLGKQV 448



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 96/416 (23%), Positives = 181/416 (43%), Gaps = 69/416 (16%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           YG ++H  + K+G   +      L+ ++ KCG +  A ++FD +       ++ MIA Y 
Sbjct: 176 YGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYH 235

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMI---------LKASTCCRSNVPLPRNLGRMV 173
           + G  +E+L+L  ++   G  PD  T   I         L  +T     +P P  +    
Sbjct: 236 RVGCYQEALALFSRMDKMGSAPDQVTLVTIISTLASSGRLDHATALLKKMPTPSTVAWNA 295

Query: 174 ----HAQI--------LKCDVKADDVLYT-----------ALVDSYVKGGKTSYARIVFD 210
               HAQ         L  D+++  +  T           A + ++V+G +   A ++  
Sbjct: 296 VISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHG 355

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS----------- 259
             L+ NV   +S+I+ +   G   DA+ +F  + EK+IV++NAM+ G+            
Sbjct: 356 --LDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRM 413

Query: 260 ----------------ISIETARKAL-------EVHCQLIKNVFFEDVKLGSALVDMYAK 296
                           +SI  A   L       +VHC  IKN     + + +A +DMY+K
Sbjct: 414 FQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSK 473

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
            G I DA+ +F  +  K+  +W ++  G  +N    +A+ +   M+   + P+ V+F  A
Sbjct: 474 YGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTA 533

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
           ++AC +    + G++I   +   Y +       + ++DL  + G +E + K   ++
Sbjct: 534 INACSNIRATETGKQI-HCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQV 588



 Score = 86.7 bits (213), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 60/210 (28%), Positives = 95/210 (45%), Gaps = 4/210 (1%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
           R +H +IL+        L  +LV+ Y K G+  YA        E+    ++S++S     
Sbjct: 76  RALHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARS 135

Query: 231 GFVEDAEEIFR----KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
           G   D    FR        +      A++      +       +VHC ++K+ F   V  
Sbjct: 136 GSPGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFC 195

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
            +ALVDMYAKCG + +ARRVFD +   +   W+SMI  Y + G   +AL LF  M +   
Sbjct: 196 EAALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGS 255

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESM 376
            P+ VT +  +S    +G +D    + + M
Sbjct: 256 APDQVTLVTIISTLASSGRLDHATALLKKM 285



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/198 (22%), Positives = 96/198 (48%), Gaps = 7/198 (3%)

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
           +LG +LV++Y K G++  A     +  ++     +S++  + ++G+P   L  F  ++ C
Sbjct: 92  RLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSGSPGDVLGAFRYIR-C 150

Query: 345 CV--QPNYVTFLGALSACGHAGLVDKGREIF-ESMERDYSMKPKMEHYACMVDLLGRAGS 401
               +P+       LSAC   G++  GR++  + ++  +S     E  A +VD+  + G 
Sbjct: 151 TAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCE--AALVDMYAKCGD 208

Query: 402 LEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSN 461
           +  A + V +    P++  W+++++        + A    + + K+ +       V + +
Sbjct: 209 VPNARR-VFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTIIS 267

Query: 462 TLAAAGKWDSVTELREKM 479
           TLA++G+ D  T L +KM
Sbjct: 268 TLASSGRLDHATALLKKM 285


>gi|449438512|ref|XP_004137032.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
 gi|449526872|ref|XP_004170437.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g41080-like [Cucumis sativus]
          Length = 667

 Score =  251 bits (640), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 153/499 (30%), Positives = 259/499 (51%), Gaps = 48/499 (9%)

Query: 34  QNYDSLSNPLTATSLPSALQHYINS----DTPFYGLKIHAHITKTGVKPNTNISIKLLIL 89
           Q YD+ ++ + +   PS   H + S     + F G ++H+ I  +G   +  IS  LL  
Sbjct: 49  QAYDTFTSEIWSD--PSLFSHLLQSCIKLGSLFGGKQVHSLIITSGGSKDKFISNHLLNF 106

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVE--------------------- 128
           + K G  K +  +F  +P+R + ++N +I GYL+ G +E                     
Sbjct: 107 YSKLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLESAQKLFDEMSERNIATWNAMI 166

Query: 129 ----------ESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
                     ++LSL +++   G  PD +T   +L+     RS +      G+ VHA +L
Sbjct: 167 AGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGLRSLLA-----GQEVHACLL 221

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
           KC  +   V+ ++L   Y+K G  S    +   M  + V+   ++I+G    G  E+   
Sbjct: 222 KCGFELSSVVGSSLAHMYIKSGSLSDGEKLIKSMPIRTVVAWNTLIAGKAQNGCPEEVLN 281

Query: 239 IFR----KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
            +          D + + +++   S  + T  +  ++H ++IK      + + S+L+ MY
Sbjct: 282 QYNMMKMAGFRPDKITFVSVLSACS-ELATLGQGQQIHAEVIKAGASSVLAVVSSLISMY 340

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           ++ G ++D+ + F   +  +V  W+SMI  YG +G   +ALELF  M++  ++ N VTFL
Sbjct: 341 SRSGCLEDSIKAFVDRENFDVVLWSSMIAAYGFHGRGEEALELFHQMEDLKMEANEVTFL 400

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             L AC H+GL +KG E F+ M + Y +KP++EHY C+VDLLGRAG LE+A   +  MP 
Sbjct: 401 SLLYACSHSGLKEKGTEYFDLMVKKYKLKPRIEHYTCVVDLLGRAGRLEEAEGMIRSMPV 460

Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
           +P+  +W  LL++C+LH + EMA   + EI KL+  D   +YV LSN  A+A  W +V++
Sbjct: 461 QPDGIIWKTLLAACKLHKEAEMAERISEEIIKLDPLD-AASYVLLSNIHASARNWLNVSQ 519

Query: 475 LREKMKLRGVLKDTGCSWV 493
           +R+ M+ R V K+ G SW+
Sbjct: 520 IRKAMRDRSVRKEPGISWL 538



 Score = 43.9 bits (102), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 45/231 (19%), Positives = 95/231 (41%), Gaps = 38/231 (16%)

Query: 218 ICSTSMISGFMS---QGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQ 274
           I S++ +  F S    G ++ A + F   +  D  +++ +++   I + +     +VH  
Sbjct: 29  ISSSASLQEFTSLCNDGRIKQAYDTFTSEIWSDPSLFSHLLQS-CIKLGSLFGGKQVHSL 87

Query: 275 LIKNVFFEDVKLGSALVDMYAKCGK-------------------------------IDDA 303
           +I +   +D  + + L++ Y+K G+                               ++ A
Sbjct: 88  IITSGGSKDKFISNHLLNFYSKLGQFKSSLVLFSNMPRRNVMSFNILINGYLQLGDLESA 147

Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
           +++FD M ++N+ TW +MI G  +     QAL LF  M      P+  T    L  C   
Sbjct: 148 QKLFDEMSERNIATWNAMIAGLTQFEFNKQALSLFKEMYGLGFLPDEFTLGSVLRGCAGL 207

Query: 364 GLVDKGREIFESMER-DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
             +  G+E+   + +  + +   +   + +  +  ++GSL    K +  MP
Sbjct: 208 RSLLAGQEVHACLLKCGFELSSVVG--SSLAHMYIKSGSLSDGEKLIKSMP 256


>gi|308080264|ref|NP_001183681.1| uncharacterized protein LOC100502275 [Zea mays]
 gi|238013832|gb|ACR37951.1| unknown [Zea mays]
 gi|413938826|gb|AFW73377.1| hypothetical protein ZEAMMB73_579690 [Zea mays]
          Length = 745

 Score =  251 bits (640), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 134/407 (32%), Positives = 225/407 (55%), Gaps = 11/407 (2%)

Query: 91  LKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFS 150
           L+C  ++ A ++F+ +  R    +  M+ G+ +NG   ++L+  R++   G   D YTF 
Sbjct: 217 LRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFG 276

Query: 151 MILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFD 210
            IL   T C +   L +  G+ +HA I++     +  + +ALVD Y K      A   F 
Sbjct: 277 SIL---TACGALSALEQ--GKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAETAFR 331

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETAR 266
            M  KN+I  T++I G+   G  E+A  +F    R  ++ D     ++I   + ++ +  
Sbjct: 332 RMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCA-NLASLE 390

Query: 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
           +  + HC  + +     + + +ALV +Y KCG I+DA R+FD M   +  +WT+++ GY 
Sbjct: 391 EGAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYA 450

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM 386
           + G   + ++LF  M    V+P+ VTF+G LSAC  AG V+KG   F SM++D+ + P  
Sbjct: 451 QFGRAKETIDLFEKMLAKDVKPDGVTFIGVLSACSRAGFVEKGCSYFHSMQKDHGIVPID 510

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446
           +HY CM+DL  R+G L++A +F+ +MP  P++  W  LLS+CRL  D+E+   AA  + +
Sbjct: 511 DHYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAENLLE 570

Query: 447 LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           ++  + P +YV L +  A  G W+ V +LR  M+ R V K+ GCSW+
Sbjct: 571 IDPQN-PASYVLLCSMHATKGNWNQVAQLRRGMRDRQVKKEPGCSWI 616



 Score =  149 bits (375), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 105/365 (28%), Positives = 172/365 (47%), Gaps = 51/365 (13%)

Query: 102 MFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE--RPDGYTFSMILKASTCC 159
           +F  + QR   +YN +IAG+   G    ++ L   L+ +G   RP   T S ++ A++  
Sbjct: 94  LFASMAQRDTVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASAL 153

Query: 160 RSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVIC 219
                  R LGR  H QIL+     +  + + LV  Y K G    A+ VFD M  KNV+ 
Sbjct: 154 GD-----RALGRQFHCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVM 208

Query: 220 STSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI------------------- 260
             +MI+G +    VE+A  +F    ++D + +  M+ G++                    
Sbjct: 209 YNTMITGLLRCKMVEEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGI 268

Query: 261 --------SIETARKAL-------EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARR 305
                   SI TA  AL       ++H  +I+  + ++V +GSALVDMY+KC  I  A  
Sbjct: 269 AIDQYTFGSILTACGALSALEQGKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIKPAET 328

Query: 306 VFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365
            F  M  KN+ +WT++I GYG+NG   +A+ +F  MQ   + P+  T    +S+C +   
Sbjct: 329 AFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISSCANLAS 388

Query: 366 VDKGREIFESMERDYSMKPKMEHYA----CMVDLLGRAGSLEQALKFVLEMPEKPNSDVW 421
           +++G + F  +    ++   + HY      +V L G+ GS+E A +   EM        W
Sbjct: 389 LEEGAQ-FHCL----ALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVS-W 442

Query: 422 AALLS 426
            AL++
Sbjct: 443 TALVT 447



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 83/312 (26%), Positives = 129/312 (41%), Gaps = 83/312 (26%)

Query: 188 LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKD 247
           L   L+ +Y K G+ + AR VFD     N+    +++S       ++D + +F    ++D
Sbjct: 43  LLNHLLTAYGKAGRHARARRVFDATPHPNLFTYNALLSTLAHARLLDDMDSLFASMAQRD 102

Query: 248 IVVYNAMIEGYSISIETAR----------------------------------KAL--EV 271
            V YNA+I G+S     AR                                  +AL  + 
Sbjct: 103 TVSYNAVIAGFSGGGAHARAVRLYHTLLRAGSSVRPSRITMSAMVMAASALGDRALGRQF 162

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV---------------- 315
           HCQ+++  F  +  +GS LV MYAK G I DA+RVFD M  KNV                
Sbjct: 163 HCQILRLGFGVNAFVGSPLVGMYAKMGLIGDAKRVFDEMDGKNVVMYNTMITGLLRCKMV 222

Query: 316 ---------------FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
                           TWT+M+ G+ +NG  +QAL  F  M+   +  +  TF   L+AC
Sbjct: 223 EEARRLFEVMTDRDCITWTTMVTGFTQNGLESQALNFFRRMRFQGIAIDQYTFGSILTAC 282

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHY-------ACMVDLLGRAGSLEQALKFVLEMP 413
           G    +++G++I   + R         HY       + +VD+  +  S++ A      M 
Sbjct: 283 GALSALEQGKQIHAYIIR--------THYDDNVFVGSALVDMYSKCRSIKPAETAFRRMS 334

Query: 414 EKPNSDVWAALL 425
            K N   W AL+
Sbjct: 335 CK-NIISWTALI 345



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 79/339 (23%), Positives = 144/339 (42%), Gaps = 44/339 (12%)

Query: 38  SLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALK 97
           +  + LTA    SAL+          G +IHA+I +T    N  +   L+ ++ KC ++K
Sbjct: 274 TFGSILTACGALSALEQ---------GKQIHAYIIRTHYDDNVFVGSALVDMYSKCRSIK 324

Query: 98  YAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
            A   F  +  + + ++  +I GY +NG  EE++ +  ++   G  PD +T   ++ +  
Sbjct: 325 PAETAFRRMSCKNIISWTALIVGYGQNGCSEEAVRVFSEMQRDGIDPDDFTLGSVISS-- 382

Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
            C +   L    G   H   L   +     +  ALV  Y K G    A  +FD ML  + 
Sbjct: 383 -CANLASLEE--GAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQ 439

Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIK 277
           +  T++++G+   G  ++  ++F K + KD+        G  +S  +    +E  C    
Sbjct: 440 VSWTALVTGYAQFGRAKETIDLFEKMLAKDVKPDGVTFIGV-LSACSRAGFVEKGCS--- 495

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
             +F  ++    +V        IDD               +T MID Y ++G   +A E 
Sbjct: 496 --YFHSMQKDHGIV-------PIDD--------------HYTCMIDLYSRSGRLKEAEEF 532

Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM 376
              M    + P+ + +   LSAC   G ++ G+   E++
Sbjct: 533 IKQMP---MHPDAIGWGTLLSACRLRGDMEIGQWAAENL 568



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 88/185 (47%), Gaps = 5/185 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G + H     +G+     +S  L+ L+ KCG+++ A ++FDE+      ++  ++ GY +
Sbjct: 392 GAQFHCLALVSGLMHYITVSNALVTLYGKCGSIEDAHRLFDEMLFHDQVSWTALVTGYAQ 451

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G+ +E++ L  K+++   +PDG TF  +L  S C R+   + +        Q     V 
Sbjct: 452 FGRAKETIDLFEKMLAKDVKPDGVTFIGVL--SACSRAGF-VEKGCSYFHSMQKDHGIVP 508

Query: 184 ADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            DD  YT ++D Y + G+   A   +  M +  + I   +++S    +G +E  +     
Sbjct: 509 IDD-HYTCMIDLYSRSGRLKEAEEFIKQMPMHPDAIGWGTLLSACRLRGDMEIGQWAAEN 567

Query: 243 TVEKD 247
            +E D
Sbjct: 568 LLEID 572


>gi|357129947|ref|XP_003566620.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 902

 Score =  251 bits (640), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 145/437 (33%), Positives = 240/437 (54%), Gaps = 14/437 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH    K  +  N  +   L+  + K G ++   ++  ++   ++   N +IAG ++
Sbjct: 421 GKQIHCLAMKHSICSNHAVGSSLIDFYSKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQ 480

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N + +E++ L ++++  G +P  +TFS IL   T   S++     +G+ VH   LK    
Sbjct: 481 NNREDEAIDLFQQVLRDGLKPSSFTFSSILSGCTGLLSSI-----IGKQVHCYTLKSGFL 535

Query: 184 ADDV-LYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
            DD  +  +LV +Y+K      A +++ +M   KN++  T+++SG+   G+   +   F 
Sbjct: 536 NDDTSVGVSLVGTYLKARMPEDANKLLIEMPDHKNLVEWTAIVSGYAQNGYSYQSLLSFW 595

Query: 242 KT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           +     V  D V + ++++  S  +       E+H  +IK+ F       SA++DMY+KC
Sbjct: 596 RMRSYDVHPDEVTFASILKACS-EMTALSDGKEIHGLIIKSGFGSYKTATSAIIDMYSKC 654

Query: 298 GKIDDARRVFDHMQQKNVFT-WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           G I  +   F  ++ K   T W SMI G+ KNG  ++AL LF  MQ+  ++ + VTFLG 
Sbjct: 655 GDIISSFEAFKELKSKQDITLWNSMILGFAKNGYADEALLLFQKMQDSQIKSDEVTFLGV 714

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           L AC HAGL+ +GR  F+SM + Y + P+++HYAC +DLLGR G L++A + + E+P +P
Sbjct: 715 LIACAHAGLISEGRHYFDSMSKVYGIMPRVDHYACFIDLLGRGGHLQEAQEVINELPFRP 774

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
           +  +WA  L++CR+H D E   IAA E+ +L   +    YV LSN  AAAG W      R
Sbjct: 775 DGVIWATYLAACRMHKDEERGEIAAKELVELEPQN-SSTYVLLSNMYAAAGNWVEAKMAR 833

Query: 477 EKMKLRGVLKDTGCSWV 493
           E M+ +G  K  GCSW+
Sbjct: 834 EAMREKGATKFPGCSWI 850



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 178/392 (45%), Gaps = 20/392 (5%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           T ++  S L    N+     G ++HA   + G+  N  +   L+ L+ KCG +  A  +F
Sbjct: 199 TRSTFASMLSAAANATAFIEGRQVHAAAVRHGLDANVFVGSSLINLYAKCGCIGDAILVF 258

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           D   ++ +  +N M+ G ++N    E++ +   +   G   D +T+  +L A     S+ 
Sbjct: 259 DCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGACAHLDSHC 318

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
                LGR V    +K  + A   +  A +D + K G    A+ +F+++  K+ +   ++
Sbjct: 319 -----LGRQVQCVTIKNCMDASLFVANATLDMHSKFGAIDDAKTLFNLITYKDTVSWNAL 373

Query: 224 ISGFMSQGFVEDAEEIFR----KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
           + G       E+A  + +      V  D V +  +I   S +I       ++HC  +K+ 
Sbjct: 374 LVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACS-NIRATETGKQIHCLAMKHS 432

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
              +  +GS+L+D Y+K G ++  R+V   +   ++     +I G  +N   ++A++LF 
Sbjct: 433 ICSNHAVGSSLIDFYSKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQNNREDEAIDLFQ 492

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM--EHYACMVDLLG 397
            +    ++P+  TF   LS C   GL+     I       Y++K     +  +  V L+G
Sbjct: 493 QVLRDGLKPSSFTFSSILSGC--TGLLSS---IIGKQVHCYTLKSGFLNDDTSVGVSLVG 547

Query: 398 ---RAGSLEQALKFVLEMPEKPNSDVWAALLS 426
              +A   E A K ++EMP+  N   W A++S
Sbjct: 548 TYLKARMPEDANKLLIEMPDHKNLVEWTAIVS 579



 Score =  108 bits (269), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 179/375 (47%), Gaps = 16/375 (4%)

Query: 71  ITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ-RTLSAYNYMIAGYLKNGQVE- 128
           + K G  P+    + ++      G L+ A  +   +P   +  A+N +I+GY +   +E 
Sbjct: 123 MEKMGSSPDRVTCVAVVCALTALGRLEDARTLLHRMPAPSSTVAWNAVISGYAQQSGIEH 182

Query: 129 ESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVL 188
           E   L + +   G  P   TF+ +L A+    + +      GR VHA  ++  + A+  +
Sbjct: 183 EVFGLYKDMRCWGLWPTRSTFASMLSAAANATAFIE-----GRQVHAAAVRHGLDANVFV 237

Query: 189 YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTV 244
            ++L++ Y K G    A +VFD   EKNV+   +M++G +   +  +A ++F    R  +
Sbjct: 238 GSSLINLYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGL 297

Query: 245 EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDAR 304
           E D   Y +++ G    +++     +V C  IKN     + + +A +DM++K G IDDA+
Sbjct: 298 EADEFTYVSVL-GACAHLDSHCLGRQVQCVTIKNCMDASLFVANATLDMHSKFGAIDDAK 356

Query: 305 RVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG 364
            +F+ +  K+  +W +++ G   N    +A+ +   M    V P+ V+F   ++AC +  
Sbjct: 357 TLFNLITYKDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACSNIR 416

Query: 365 LVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK---PNSDVW 421
             + G++I   +   +S+       + ++D   + G +E   K + ++      P + + 
Sbjct: 417 ATETGKQI-HCLAMKHSICSNHAVGSSLIDFYSKHGDVESCRKVLAQVDASSIVPRNVLI 475

Query: 422 AALLSSCRLHDDVEM 436
           A L+ + R  + +++
Sbjct: 476 AGLVQNNREDEAIDL 490



 Score = 90.5 bits (223), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 86/369 (23%), Positives = 160/369 (43%), Gaps = 51/369 (13%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G + H    K G+      +  L+ ++ +CG +  A ++F  +       +  MI+GY +
Sbjct: 50  GKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDARRVFGGISLPDTVCWASMISGYHR 109

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL--KCD 181
            G+ +E++ L  ++   G  PD  T   ++ A T           LGR+  A+ L  +  
Sbjct: 110 AGRFQEAVCLFTRMEKMGSSPDRVTCVAVVCALTA----------LGRLEDARTLLHRMP 159

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVIC-----STSMISGFMSQGFVEDA 236
             +  V + A++  Y +  ++     VF   L K++ C     + S  +  +S       
Sbjct: 160 APSSTVAWNAVISGYAQ--QSGIEHEVFG--LYKDMRCWGLWPTRSTFASMLSAA----- 210

Query: 237 EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
                           A IEG  +     R  L+       NVF     +GS+L+++YAK
Sbjct: 211 ------------ANATAFIEGRQVHAAAVRHGLDA------NVF-----VGSSLINLYAK 247

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG I DA  VFD   +KNV  W +M++G  +N    +A+++F  M+   ++ +  T++  
Sbjct: 248 CGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSV 307

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           L AC H      GR++ + +     M   +      +D+  + G+++ A K +  +    
Sbjct: 308 LGACAHLDSHCLGRQV-QCVTIKNCMDASLFVANATLDMHSKFGAIDDA-KTLFNLITYK 365

Query: 417 NSDVWAALL 425
           ++  W ALL
Sbjct: 366 DTVSWNALL 374


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 142/434 (32%), Positives = 243/434 (55%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH+   K G + +  +S  L+ ++ K   L  A ++ + L +R + ++  MIAGY++
Sbjct: 365 GEQIHSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQ 424

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +   EE+L+  +++   G  PD     +   AS C  + +   R  G  +HA++      
Sbjct: 425 HDFCEEALATFKEMQDCGVWPD--NIGLASAASAC--AGIKAMRQ-GLQIHARVYVSGYA 479

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           AD  ++  LV+ Y + G++  A  +F  +  K+ I    +ISGF      E A  +F K 
Sbjct: 480 ADISIWNTLVNLYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKM 539

Query: 244 VEKDIVVYNAMIEGYSIS----IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            +     YN      +IS    +   ++  +VH + +K     + ++ +AL+ +Y KCG 
Sbjct: 540 SQAG-AKYNVFTFISAISALANLADIKQGKQVHGRAVKTGHTSETEVANALISLYGKCGS 598

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I+DA+ +F  M  +N  +W ++I    ++G   +AL+LF  M++  ++PN VTF+G L+A
Sbjct: 599 IEDAKMIFSEMSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAA 658

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H GLV++G   F+SM   Y + P  +HYAC+VD+LGRAG L++A +FV EMP   N+ 
Sbjct: 659 CSHVGLVEEGLSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAM 718

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           +W  LLS+C++H ++E+  +AA  + +L  +D   +YV LSN  A  GKW +  ++R+ M
Sbjct: 719 IWRTLLSACKVHKNIEIGELAAKHLLELEPHD-SASYVLLSNAYAVTGKWANRDQVRKMM 777

Query: 480 KLRGVLKDTGCSWV 493
           K RG+ K+ G SW+
Sbjct: 778 KDRGIRKEPGRSWI 791



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 194/372 (52%), Gaps = 12/372 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H+++ K G+  +      LL L++KCG ++ A  +F+   +  +  +N M+  Y +
Sbjct: 264 GKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQ 323

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
              + +S  +  ++ ++G  P+ +T+  IL+  TC          LG  +H+  +K   +
Sbjct: 324 ISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQ-----IELGEQIHSLSIKNGFE 378

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +D  +   L+D Y K      AR + +M+ +++V+  TSMI+G++   F E+A   F++ 
Sbjct: 379 SDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEM 438

Query: 244 VEKDIVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
            +  +   N   A        I+  R+ L++H ++  + +  D+ + + LV++YA+CG+ 
Sbjct: 439 QDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYARCGRS 498

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           ++A  +F  +  K+  TW  +I G+G++    QAL +F  M +   + N  TF+ A+SA 
Sbjct: 499 EEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISAISAL 558

Query: 361 GHAGLVDKGREIF-ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
            +   + +G+++   +++  ++ + ++ +   ++ L G+ GS+E A     EM  + N  
Sbjct: 559 ANLADIKQGKQVHGRAVKTGHTSETEVAN--ALISLYGKCGSIEDAKMIFSEMSLR-NEV 615

Query: 420 VWAALLSSCRLH 431
            W  +++SC  H
Sbjct: 616 SWNTIITSCSQH 627



 Score =  130 bits (328), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 103/377 (27%), Positives = 178/377 (47%), Gaps = 12/377 (3%)

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           L+IHA     G+  +  I   L+ L+ K G +  A Q+F EL  R   ++  M++GY + 
Sbjct: 63  LEIHATSVVRGLGADRLIGNLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQR 122

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
           G  +E+  L  ++  +   P  Y  S +L  S C +  +      GRM+HAQ+ K    +
Sbjct: 123 GLGKEAFRLYSQMHWTAVIPTPYVLSSVL--SACTKGKLFAQ---GRMIHAQVYKQAFCS 177

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT- 243
           +  +  AL+  Y+  G    A  VF  ML  + +   ++ISG    G  E A +IF +  
Sbjct: 178 ETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQ 237

Query: 244 ---VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
              +  D V   +++   + S+   +K  ++H  L+K     D     +L+D+Y KCG I
Sbjct: 238 LSGLRPDCVTVASLLAACA-SVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDI 296

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           + A  +F+   + NV  W  M+  YG+  +  ++ E+F  MQ   + PN  T+   L  C
Sbjct: 297 ETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTC 356

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
              G ++ G +I  S+      +  M     ++D+  +   L++A K +LEM EK +   
Sbjct: 357 TCTGQIELGEQI-HSLSIKNGFESDMYVSGVLIDMYSKYRCLDKARK-ILEMLEKRDVVS 414

Query: 421 WAALLSSCRLHDDVEMA 437
           W ++++    HD  E A
Sbjct: 415 WTSMIAGYVQHDFCEEA 431



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 177/369 (47%), Gaps = 16/369 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  IHA + K      T +   L+ L+L  G+ K A ++F ++       +N +I+G+ +
Sbjct: 163 GRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERVFCDMLFCDRVTFNTLISGHAQ 222

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G  E +L +  ++  SG RPD  T + +L A   C S   L +  G+ +H+ +LK  + 
Sbjct: 223 CGHGECALQIFDEMQLSGLRPDCVTVASLLAA---CASVGDLQK--GKQLHSYLLKAGMS 277

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D +   +L+D YVK G    A  +F++    NV+    M+  +     +  + EIF + 
Sbjct: 278 FDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVAYGQISDLAKSFEIFGQM 337

Query: 244 ----VEKDIVVYNAMIEGYSIS--IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
               +  +   Y  ++   + +  IE      ++H   IKN F  D+ +   L+DMY+K 
Sbjct: 338 QATGIHPNKFTYPCILRTCTCTGQIELGE---QIHSLSIKNGFESDMYVSGVLIDMYSKY 394

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
             +D AR++ + +++++V +WTSMI GY ++    +AL  F  MQ+C V P+ +    A 
Sbjct: 395 RCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQDCGVWPDNIGLASAA 454

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           SAC     + +G +I   +         +  +  +V+L  R G  E+A     E+  K +
Sbjct: 455 SACAGIKAMRQGLQIHARVYVS-GYAADISIWNTLVNLYARCGRSEEAFSLFREIDHK-D 512

Query: 418 SDVWAALLS 426
              W  L+S
Sbjct: 513 EITWNGLIS 521


>gi|449493040|ref|XP_004159175.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g18840-like [Cucumis sativus]
          Length = 1096

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 166/502 (33%), Positives = 261/502 (51%), Gaps = 73/502 (14%)

Query: 63   YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYA-------GQMFD----------- 104
            YG ++H+ + KT        +  L+ ++ KCG  K A       G++ D           
Sbjct: 564  YGKQLHSFMLKTANDLTVFAASSLIDMYSKCGFFKEACRVYYGCGEVVDSVSRNAMVAAC 623

Query: 105  ---------------ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149
                           EL Q  + A+N MI+G+++NG  EESL L  ++       + +TF
Sbjct: 624  CREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYEEESLKLFVRMADEKVGWNEHTF 683

Query: 150  SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVF 209
            + +L A +  RS       LG+ VHA +LK  + A+  + + LVD Y K     YA  V 
Sbjct: 684  ASVLSACSNLRS-----LKLGKEVHAYVLKNRLIANPFICSGLVDVYCKCNNMRYAESVN 738

Query: 210  DMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS---------- 259
              +  +NV   TSMI G+ SQG + +A ++F    EK+ VV+ A+  GY           
Sbjct: 739  SELRMQNVYSITSMIVGYSSQGNMAEARKLFDSLDEKNSVVWTALFFGYVKLQQCEAVFE 798

Query: 260  -----------------ISIETA---RKAL----EVHCQLIKNVFFEDVKLGSALVDMYA 295
                             ISI  A   + AL    ++H  +++     D KL S+LVDMY+
Sbjct: 799  LLSEYRKEAKVPDVLILISIIGACAIQAALVPGKQIHSYMLRAGIKLDTKLTSSLVDMYS 858

Query: 296  KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
            KCG I  A R+F  +  K+   +  MI GY  +G  N+A++LF  M +   +P+ +TF+ 
Sbjct: 859  KCGSIIYAERIFREVTDKDSIIYNIMIAGYAHHGWENEAVQLFKEMVKHGFKPDAITFVA 918

Query: 356  ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
             LSAC H GLV+ G   F+SM  DY++ P+++HYACM+DL GRA  L++AL+F+ ++P +
Sbjct: 919  LLSACRHGGLVELGEHFFDSMSNDYNICPEIDHYACMIDLYGRANQLDKALEFMRKIPIQ 978

Query: 416  PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
             ++ +W A L++CR++ + E+A  A +E+  +   +    YV L+N  AA G W+ +  +
Sbjct: 979  LDAVIWGAFLNACRINGNAELARKAEDELLVIEG-ENGSRYVQLANVYAAEGNWEEMGRI 1037

Query: 476  REKMKLRGVLKDTGCSWVGTES 497
            R+KMK + V K+ GCSWV  ES
Sbjct: 1038 RKKMKGKEVKKNAGCSWVFVES 1059



 Score =  102 bits (254), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 103/457 (22%), Positives = 189/457 (41%), Gaps = 113/457 (24%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +GL  H    K+G  P   +S +L+  + K G L  A ++FDE+P+R + ++N +IA Y+
Sbjct: 429 HGLLCHLQGIKSGFTPTIFMSNQLITFYAKHGLLNDAQKLFDEMPERNVFSWNAIIAAYV 488

Query: 123 KNGQVEESLSLV-----------RKLVSSGERPDGYT---------------------FS 150
           K+  + ++ +L              ++S   R DGY                      F+
Sbjct: 489 KSQNLRQARALFDSAVCKDLVTYNSMLSGYARSDGYQGQALGFFMEMQTAPDMIRIDEFT 548

Query: 151 MI----LKASTCCRSNVPLPRNLGRMVHAQILK--------------------------- 179
           +I    L A  C  S        G+ +H+ +LK                           
Sbjct: 549 LITMLNLTAKLCVIS-------YGKQLHSFMLKTANDLTVFAASSLIDMYSKCGFFKEAC 601

Query: 180 -----CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN-VICSTSMISGFMSQGFV 233
                C    D V   A+V +  + G+   A  +F   LE+N V+   +MISGF+  G+ 
Sbjct: 602 RVYYGCGEVVDSVSRNAMVAACCREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYE 661

Query: 234 EDAEEIFRKTVEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSA 289
           E++ ++F +  ++ +      + +++   S ++ + +   EVH  ++KN    +  + S 
Sbjct: 662 EESLKLFVRMADEKVGWNEHTFASVLSACS-NLRSLKLGKEVHAYVLKNRLIANPFICSG 720

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF----------- 338
           LVD+Y KC  +  A  V   ++ +NV++ TSMI GY   GN  +A +LF           
Sbjct: 721 LVDVYCKCNNMRYAESVNSELRMQNVYSITSMIVGYSSQGNMAEARKLFDSLDEKNSVVW 780

Query: 339 -------CMMQEC-------------CVQPNYVTFLGALSACGHAGLVDKGREIFESMER 378
                    +Q+C                P+ +  +  + AC     +  G++I   M R
Sbjct: 781 TALFFGYVKLQQCEAVFELLSEYRKEAKVPDVLILISIIGACAIQAALVPGKQIHSYMLR 840

Query: 379 DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
              +K   +  + +VD+  + GS+  A +   E+ +K
Sbjct: 841 A-GIKLDTKLTSSLVDMYSKCGSIIYAERIFREVTDK 876



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 45/73 (61%)

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
           +  L  H Q IK+ F   + + + L+  YAK G ++DA+++FD M ++NVF+W ++I  Y
Sbjct: 428 KHGLLCHLQGIKSGFTPTIFMSNQLITFYAKHGLLNDAQKLFDEMPERNVFSWNAIIAAY 487

Query: 326 GKNGNPNQALELF 338
            K+ N  QA  LF
Sbjct: 488 VKSQNLRQARALF 500


>gi|359483031|ref|XP_002271968.2| PREDICTED: pentatricopeptide repeat-containing protein At4g02750
           [Vitis vinifera]
          Length = 788

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 152/469 (32%), Positives = 249/469 (53%), Gaps = 55/469 (11%)

Query: 78  PNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL 137
           PNT   + +L    + G +  A ++FD++P R + A+N MIA Y++N  V+E++SL  ++
Sbjct: 231 PNTVSWVTMLCGFARFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEM 290

Query: 138 -----VSSGERPDGYTFSMILKASTCCRSNVPLPRNLG-------------RMVHAQILK 179
                +S     +GY     L  +    + +P  RN+              RM  A+ + 
Sbjct: 291 PEKNSISWTTVINGYVRMGKLDEARQLLNQMPY-RNVAAQTAMISGYVQNKRMDDARQIF 349

Query: 180 CDVKADDVL-YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
             +   DV+ +  ++  Y + G+   A  +F  M++K+++   +M++ +   G ++ A +
Sbjct: 350 NQISIRDVVCWNTMIAGYSQCGRMDEALHLFKQMVKKDIVSWNTMVASYAQVGQMDAAIK 409

Query: 239 IFRKTVEKDIVVYNAMIEGYS------------------------------ISIETARKA 268
           IF +  EK+IV +N++I G +                              +S      A
Sbjct: 410 IFEEMKEKNIVSWNSLISGLTQNGSYLDALKSFMLMGHEGQKPDQSTFACGLSSCAHLAA 469

Query: 269 LEVHCQL----IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDG 324
           L+V  QL    +K+ +  D+ + +AL+ MYAKCG I  A  +F  +   +V +W S+I  
Sbjct: 470 LQVGKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAA 529

Query: 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP 384
           Y  NGN  +AL+LF  M+   V P+ VTF+G LSAC H GL+D+G ++F+ M + Y+++P
Sbjct: 530 YALNGNGREALKLFHKMEVEGVAPDEVTFVGILSACSHVGLIDQGLKLFKCMVQAYNIEP 589

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444
             EHYACMVDLLGRAG LE+A + V  M    N+ +W ALL +CR+H ++E+A  AA ++
Sbjct: 590 LAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAKFAAEKL 649

Query: 445 FKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            +   + +   YV LSN  A AG+WD V  +R  MK +G  K  G SW+
Sbjct: 650 LEFEPH-KTSNYVLLSNMQAEAGRWDEVARVRRLMKEKGAEKQPGWSWI 697



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 161/321 (50%), Gaps = 41/321 (12%)

Query: 64  GLKIHAHIT-KTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
            +K+  H+T K  V  N+ IS        K G +  A Q+FD +PQR + ++N MIA YL
Sbjct: 34  AIKVFQHMTHKNTVTHNSMISA-----FAKNGRISDARQLFDGMPQRNIVSWNSMIAAYL 88

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP--RNLGRMVHAQILKC 180
            N +VEE+  L  K+ +     D Y++++++   TC   N  L   RNL  ++       
Sbjct: 89  HNDRVEEARQLFDKMPTR----DLYSWTLMI---TCYTRNGELAKARNLFNLL------- 134

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
             K + V   A+V  Y K  +   AR +FD M  K+++   SM++G+   G +    + F
Sbjct: 135 PYKWNPVCCNAMVAGYAKNRQFDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFF 194

Query: 241 RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSAL--VDM---YA 295
            +  E+D+V +N M++G+ + +     + E         FFE +   + +  V M   +A
Sbjct: 195 EEMAERDVVSWNLMVDGF-VEVGDLNSSWE---------FFEKIPNPNTVSWVTMLCGFA 244

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           + GKI +ARR+FD M  +NV  W +MI  Y +N + ++A+ LF  M E     N +++  
Sbjct: 245 RFGKIAEARRLFDQMPIRNVVAWNAMIAAYVQNCHVDEAISLFMEMPE----KNSISWTT 300

Query: 356 ALSACGHAGLVDKGREIFESM 376
            ++     G +D+ R++   M
Sbjct: 301 VINGYVRMGKLDEARQLLNQM 321



 Score = 99.0 bits (245), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 142/310 (45%), Gaps = 28/310 (9%)

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
           + V + +++ ++ K G+ S AR +FD M ++N++   SMI+ ++    VE+A ++F K  
Sbjct: 45  NTVTHNSMISAFAKNGRISDARQLFDGMPQRNIVSWNSMIAAYLHNDRVEEARQLFDKMP 104

Query: 245 EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVF-FEDVKLG----SALVDMYAKCGK 299
            +D+  +  MI  Y+ + E A+          +N+F     K      +A+V  YAK  +
Sbjct: 105 TRDLYSWTLMITCYTRNGELAKA---------RNLFNLLPYKWNPVCCNAMVAGYAKNRQ 155

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
            D+ARR+FD M  K++ +W SM+ GY +NG     L+ F  M E     + V++   +  
Sbjct: 156 FDEARRLFDAMPAKDLVSWNSMLTGYTRNGEMRLGLQFFEEMAE----RDVVSWNLMVDG 211

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
               G ++   E FE +       P    +  M+    R G + +A +   +MP + N  
Sbjct: 212 FVEVGDLNSSWEFFEKIP-----NPNTVSWVTMLCGFARFGKIAEARRLFDQMPIR-NVV 265

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
            W A++++   +  V+     A  +F         ++  + N     GK D   +L  +M
Sbjct: 266 AWNAMIAAYVQNCHVD----EAISLFMEMPEKNSISWTTVINGYVRMGKLDEARQLLNQM 321

Query: 480 KLRGVLKDTG 489
             R V   T 
Sbjct: 322 PYRNVAAQTA 331



 Score = 67.0 bits (162), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/267 (21%), Positives = 126/267 (47%), Gaps = 12/267 (4%)

Query: 70  HITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEE 129
           H+ K  VK +      ++  + + G +  A ++F+E+ ++ + ++N +I+G  +NG   +
Sbjct: 378 HLFKQMVKKDIVSWNTMVASYAQVGQMDAAIKIFEEMKEKNIVSWNSLISGLTQNGSYLD 437

Query: 130 SLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLY 189
           +L     +   G++PD  TF+  L  S+C          +G+ +H  ++K     D  + 
Sbjct: 438 ALKSFMLMGHEGQKPDQSTFACGL--SSCAH---LAALQVGKQLHQLVMKSGYATDLFVS 492

Query: 190 TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VE 245
            AL+  Y K G  S A ++F  +   +V+   S+I+ +   G   +A ++F K     V 
Sbjct: 493 NALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYALNGNGREALKLFHKMEVEGVA 552

Query: 246 KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSA-LVDMYAKCGKIDDAR 304
            D V +  ++   S  +    + L++   +++    E +    A +VD+  + G++++A 
Sbjct: 553 PDEVTFVGILSACS-HVGLIDQGLKLFKCMVQAYNIEPLAEHYACMVDLLGRAGRLEEAF 611

Query: 305 RVFDHMQ-QKNVFTWTSMIDGYGKNGN 330
           ++   M+   N   W +++     +GN
Sbjct: 612 QLVRGMKINANAGIWGALLGACRIHGN 638



 Score = 60.5 bits (145), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 62/128 (48%), Gaps = 11/128 (8%)

Query: 291 VDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY 350
           +    K G+ID+A +VF HM  KN  T  SMI  + KNG  + A +LF  M     Q N 
Sbjct: 22  ITQLGKSGQIDEAIKVFQHMTHKNTVTHNSMISAFAKNGRISDARQLFDGMP----QRNI 77

Query: 351 VTFLGALSACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFV 409
           V++   ++A  H   V++ R++F+ M  RD      +  +  M+    R G L +A    
Sbjct: 78  VSWNSMIAAYLHNDRVEEARQLFDKMPTRD------LYSWTLMITCYTRNGELAKARNLF 131

Query: 410 LEMPEKPN 417
             +P K N
Sbjct: 132 NLLPYKWN 139



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 87/188 (46%), Gaps = 15/188 (7%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H  + K+G   +  +S  L+ ++ KCG++  A  +F ++    + ++N +IA Y  
Sbjct: 473 GKQLHQLVMKSGYATDLFVSNALITMYAKCGSISSAELLFKDIDHFDVVSWNSLIAAYAL 532

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG   E+L L  K+   G  PD  TF  IL A   C     + + L      ++ KC V+
Sbjct: 533 NGNGREALKLFHKMEVEGVAPDEVTFVGILSA---CSHVGLIDQGL------KLFKCMVQ 583

Query: 184 ADDV-----LYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
           A ++      Y  +VD   + G+   A ++V  M +  N     +++      G +E A+
Sbjct: 584 AYNIEPLAEHYACMVDLLGRAGRLEEAFQLVRGMKINANAGIWGALLGACRIHGNLELAK 643

Query: 238 EIFRKTVE 245
               K +E
Sbjct: 644 FAAEKLLE 651


>gi|224124386|ref|XP_002330010.1| predicted protein [Populus trichocarpa]
 gi|222871435|gb|EEF08566.1| predicted protein [Populus trichocarpa]
          Length = 677

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 154/498 (30%), Positives = 246/498 (49%), Gaps = 79/498 (15%)

Query: 66  KIHAHI-TKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           K+H+ I     + PN ++ IKL+  +  CG   Y   +FDE+  + +  +N MI  Y+ N
Sbjct: 56  KLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVNN 115

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
           G  +++L + + + + G  PD YT+  +LKA +     V     +G  +H  ++K  +  
Sbjct: 116 GLYQDALLVFKTMANQGFYPDNYTYPCVLKACS-----VSGNLWVGLQIHGAVVKLGLDM 170

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA-------- 236
           +  +   LV  Y K      AR V D M  ++++   SM++G+   G   DA        
Sbjct: 171 NLYIGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREME 230

Query: 237 -----------------------------EEIFRKTVEKDIVVYNAMIEGY--------- 258
                                        +++F K  EK ++ +N MI  Y         
Sbjct: 231 DLKLKPDAGTMGSLLPAVTNTSCDNVLYVKDMFVKLKEKSLISWNVMIAVYVNNAMPNEA 290

Query: 259 ---------------SISIETARKAL----------EVHCQLIKNVFFEDVKLGSALVDM 293
                          ++SI +   A            +H  + +     ++ L +AL+DM
Sbjct: 291 VDLYLQMQVHGVEPDAVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDM 350

Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           YAKCG + +AR VFD M  ++V +WTSMI  YG +G    A+ LF  M++    P+++ F
Sbjct: 351 YAKCGCLKEARAVFDQMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAF 410

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           +  L+AC HAGLVD+GR  F  M  +Y + P +EHY CMVDLLGRAG +++A     +MP
Sbjct: 411 VSVLAACSHAGLVDEGRYCFNLMA-EYGITPGIEHYNCMVDLLGRAGKIDEAYHLTRQMP 469

Query: 414 EKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473
            +PN  VW +LLS+CR++  + +A +AA+ +F+L A ++ G YV LSN  A AG+W  V 
Sbjct: 470 MEPNERVWGSLLSACRVYSSMNIALLAADHLFQL-APEQSGYYVLLSNIYAKAGRWQDVE 528

Query: 474 ELREKMKLRGVLKDTGCS 491
            +R  M  +G+ K  G S
Sbjct: 529 TVRSIMNSKGIKKIPGNS 546



 Score = 93.2 bits (230), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 57/194 (29%), Positives = 103/194 (53%), Gaps = 6/194 (3%)

Query: 171 RMVHAQIL-KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           + +H++IL   ++  +  L   L+ +Y   G+  Y R +FD + +KNV+    MI  +++
Sbjct: 55  KKLHSKILIDQNLHPNPSLGIKLMRAYAACGEPCYTRHIFDEITDKNVVFFNVMIRSYVN 114

Query: 230 QGFVEDAEEIFRKTVEK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
            G  +DA  +F+    +    D   Y  +++  S+S       L++H  ++K     ++ 
Sbjct: 115 NGLYQDALLVFKTMANQGFYPDNYTYPCVLKACSVS-GNLWVGLQIHGAVVKLGLDMNLY 173

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           +G+ LV MY KC  +D ARRV D M  +++ +W SM+ GY +NG  N AL+L   M++  
Sbjct: 174 IGNGLVSMYGKCKWLDAARRVLDEMPGRDMVSWNSMVAGYAQNGRFNDALKLCREMEDLK 233

Query: 346 VQPNYVTFLGALSA 359
           ++P+  T    L A
Sbjct: 234 LKPDAGTMGSLLPA 247



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 62/113 (54%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           A S+ S L    +      G +IH ++ +  ++PN  +   L+ ++ KCG LK A  +FD
Sbjct: 306 AVSISSVLPACGDLSAAVLGRRIHEYVERKKLRPNLLLENALIDMYAKCGCLKEARAVFD 365

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           ++  R + ++  MI+ Y  +GQ +++++L +K+  SG  PD   F  +L A +
Sbjct: 366 QMMFRDVVSWTSMISAYGMSGQGKDAVALFKKMRDSGFTPDWIAFVSVLAACS 418


>gi|222625199|gb|EEE59331.1| hypothetical protein OsJ_11408 [Oryza sativa Japonica Group]
          Length = 691

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 144/432 (33%), Positives = 237/432 (54%), Gaps = 14/432 (3%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           NP   TS+   L+  +   +   G  IH    KT      ++   LL ++ KCG +K A 
Sbjct: 262 NPFALTSV---LKAAVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDAR 318

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
             F+ +P   +   ++MI+ Y ++ Q E++  L  +L+ S   P+ Y+ S +L+A   C 
Sbjct: 319 LAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQA---CT 375

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           + V L  + G+ +H   +K   ++D  +  AL+D Y K      +  +F  + + N +  
Sbjct: 376 NMVQL--DFGKQIHNHAIKIGHESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSW 433

Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLI 276
            +++ GF   G  E+A  +F +     +    V Y++++   + S  + R A ++HC + 
Sbjct: 434 NTIVVGFSQSGLGEEALSVFCEMQAAQMPCTQVTYSSVLRACA-STASIRHAGQIHCSIE 492

Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
           K+ F  D  +G++L+D YAKCG I DA +VF H+ ++++ +W ++I GY  +G    ALE
Sbjct: 493 KSTFNNDTVIGNSLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALE 552

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
           LF  M +  V+ N +TF+  LS C   GLV+ G  +F+SM  D+ +KP MEHY C+V LL
Sbjct: 553 LFDRMNKSNVESNDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLL 612

Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456
           GRAG L  AL+F+ ++P  P++ VW ALLSSC +H +V +   +A +I ++   D    Y
Sbjct: 613 GRAGRLNDALQFIGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDET-TY 671

Query: 457 VALSNTLAAAGK 468
           V LSN  AAA K
Sbjct: 672 VLLSNMYAAARK 683



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 105/444 (23%), Positives = 199/444 (44%), Gaps = 24/444 (5%)

Query: 48  LPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP 107
           L + L+  I  D       +H+   K G   N  +   L+  +  C  +  A  +F+ + 
Sbjct: 165 LTTMLKLAIAMDAAGLAGGVHSCAWKLGHDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIV 224

Query: 108 QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR 167
           ++    +  M++ Y +N   E +  +  K+  SG +P+ +  + +LKA+ C  S V    
Sbjct: 225 RKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVLKAAVCLPSVV---- 280

Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
            LG+ +H   +K     +  +  AL+D Y K G    AR+ F+M+   +VI  + MIS +
Sbjct: 281 -LGKGIHGCAIKTLNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDVILLSFMISRY 339

Query: 228 MSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS--IETARKALE------VHCQLIKNV 279
                 E A E+F + +   +     +   YS+S  ++     ++      +H   IK  
Sbjct: 340 AQSNQNEQAFELFLRLMRSSV-----LPNEYSLSSVLQACTNMVQLDFGKQIHNHAIKIG 394

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
              D+ +G+AL+D YAKC  +D + ++F  ++  N  +W +++ G+ ++G   +AL +FC
Sbjct: 395 HESDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEEALSVFC 454

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
            MQ   +    VT+   L AC     +    +I  S+E+  +          ++D   + 
Sbjct: 455 EMQAAQMPCTQVTYSSVLRACASTASIRHAGQIHCSIEKS-TFNNDTVIGNSLIDTYAKC 513

Query: 400 GSLEQALKFVLEMPEKPNSDV--WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457
           G +  ALK    + E+   D+  W A++S   LH     A    + + K N       +V
Sbjct: 514 GYIRDALKVFQHLMER---DIISWNAIISGYALHGQAADALELFDRMNKSNVESNDITFV 570

Query: 458 ALSNTLAAAGKWDSVTELREKMKL 481
           AL +  ++ G  +    L + M++
Sbjct: 571 ALLSVCSSTGLVNHGLSLFDSMRI 594



 Score =  109 bits (272), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 76/315 (24%), Positives = 148/315 (46%), Gaps = 12/315 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHL--KCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           G  +H H+ + G     ++    ++L++  K G L  A ++FD +P+R + ++  ++  +
Sbjct: 78  GRAVHGHVVRRGGVGRLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAH 137

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            + G  E + +L R+L   G   + +  + +LK +    +       L   VH+   K  
Sbjct: 138 AQRGDFEAAAALFRRLRWEGHEVNQFVLTTMLKLAIAMDA-----AGLAGGVHSCAWKLG 192

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
              +  + + L+D+Y      S A  VF+ ++ K+ +  T+M+S +      E+A  +F 
Sbjct: 193 HDHNAFVGSGLIDAYSLCSLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFS 252

Query: 242 KT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
           K      + +     ++++  ++ + +      +H   IK +   +  +G AL+DMYAKC
Sbjct: 253 KMRVSGCKPNPFALTSVLKA-AVCLPSVVLGKGIHGCAIKTLNDTEPHVGGALLDMYAKC 311

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           G I DAR  F+ +   +V   + MI  Y ++    QA ELF  +    V PN  +    L
Sbjct: 312 GDIKDARLAFEMIPYDDVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVL 371

Query: 358 SACGHAGLVDKGREI 372
            AC +   +D G++I
Sbjct: 372 QACTNMVQLDFGKQI 386


>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Vitis vinifera]
          Length = 829

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 140/435 (32%), Positives = 246/435 (56%), Gaps = 14/435 (3%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD-ELPQRTLSAYNYMIAGYLKN 124
           ++HA I K G+  +T +   ++  + +CG+++ A ++FD  +  R L  +N M+A YL N
Sbjct: 222 QVHAKIVKHGLASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYLVN 281

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
            Q EE+  L  ++   G  PD YT++ ++ A+          +  G+ +H  ++K  ++ 
Sbjct: 282 NQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSH-----QGQGKSLHGLVIKRGLEF 336

Query: 185 DDVLYTALVDSYVKGGKTSY--ARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
              +  +L+  Y+K    S   A  +F+ +  K+ +   S+++GF   G  EDA + F  
Sbjct: 337 LVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDALKFFEN 396

Query: 243 TVEKDIVV----YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
              + +V+    ++A++   S  + T +   +VH  ++K+ F  +  + S+L+ MY+KCG
Sbjct: 397 MRSQYVVIDHYAFSAVLRSCS-DLATLQLGQQVHVLVLKSGFEPNGFVASSLIFMYSKCG 455

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            I+DAR+ FD   + +   W S+I GY ++G    AL+LF +M++  V+ +++TF+  L+
Sbjct: 456 VIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLT 515

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC H GLV++G    +SME DY + P+MEHYACM+DLLGRAG L++A   +  MP +P++
Sbjct: 516 ACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDA 575

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            VW  LL +CR   D+E+A+  A+ + +L   +    YV LS+      +W+    ++  
Sbjct: 576 MVWKTLLGACRTCGDIELASQVASHLLELEPEEHC-TYVLLSSMFGHLRRWNEKASIKRL 634

Query: 479 MKLRGVLKDTGCSWV 493
           MK RGV K  G SW+
Sbjct: 635 MKERGVKKVPGWSWI 649



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 175/367 (47%), Gaps = 17/367 (4%)

Query: 68  HAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV 127
           H    K+G   +   +  ++  + KCG ++ A +MF E  QR   ++N MIAG++  G  
Sbjct: 22  HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNF 81

Query: 128 EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV 187
           E +L  ++ +   G   DGY+F  ILK   C          +G+ VH+ ++K   + +  
Sbjct: 82  ETALEFLKSMKRYGFAVDGYSFGSILKGVACVGY-----VEVGQQVHSMMVKMGYEGNVF 136

Query: 188 LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG------FVEDAEEIFR 241
             +AL+D Y K  +   A  VF  +  +N +   ++ISG+   G      ++ D  E+  
Sbjct: 137 AGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMEL-- 194

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
           + VE D   + A +       +  +   +VH +++K+    D  + +A++  Y++CG I+
Sbjct: 195 EGVEIDDGTF-APLLTLLDDPDLHKLTTQVHAKIVKHGLASDTTVCNAIITAYSECGSIE 253

Query: 302 DARRVFD-HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
           DA RVFD  ++ +++ TW SM+  Y  N    +A +LF  MQ    +P+  T+   +SA 
Sbjct: 254 DAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAA 313

Query: 361 GHAGLVDKGREIFE-SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
                  +G+ +    ++R       + +    + L   + S+++AL  + E  E  +  
Sbjct: 314 FEGSHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALN-IFESLENKDHV 372

Query: 420 VWAALLS 426
            W ++L+
Sbjct: 373 SWNSILT 379



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 52/92 (56%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H  + K+G +PN  ++  L+ ++ KCG ++ A + FD  P+ +  A+N +I GY +
Sbjct: 425 GQQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQ 484

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           +G+ + +L L   +     + D  TF  +L A
Sbjct: 485 HGRGKIALDLFFLMKDRRVKLDHITFVAVLTA 516


>gi|356530157|ref|XP_003533650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g56690,
           mitochondrial-like [Glycine max]
          Length = 711

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 165/536 (30%), Positives = 261/536 (48%), Gaps = 88/536 (16%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           T +S  + +  Y  +  P   L +   + +     NT     L+  H+K G L  A ++F
Sbjct: 54  TVSSWNAMVAAYFEARQPREALLLFEKMPQR----NTVSWNGLISGHIKNGMLSEARRVF 109

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSL---------------VRKLVSSGERPDGYT 148
           D +P R + ++  M+ GY++NG V E+  L               +  L+  G   D   
Sbjct: 110 DTMPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARK 169

Query: 149 -FSMILKASTCCRSN-VPLPRNLGRMVHAQILKCDV-KADDVLYTALVDSYVKGGKTSYA 205
            F M+ +      +N +      GR+  A+ L  ++ K + V +TA+V  Y + GK   A
Sbjct: 170 LFDMMPEKDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNGKVDVA 229

Query: 206 RIVFDMMLEKN-------------------------------VICSTSMISGFMSQGFVE 234
           R +F++M E+N                               V+    MI GF   G V+
Sbjct: 230 RKLFEVMPERNEVSWTAMLLGYTHSGRMREASSLFDAMPVKPVVVCNEMIMGFGLNGEVD 289

Query: 235 DAEEIFRKTVEKDIVVYNAMIEGYS----------------------------------I 260
            A  +F+   E+D   ++AMI+ Y                                   +
Sbjct: 290 KARRVFKGMKERDNGTWSAMIKVYERKGYELEALGLFRRMQREGLALNFPSLISVLSVCV 349

Query: 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
           S+ +     +VH QL+++ F +D+ + S L+ MY KCG +  A++VF+    K+V  W S
Sbjct: 350 SLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQVFNRFPLKDVVMWNS 409

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
           MI GY ++G   +AL +F  M    V P+ VTF+G LSAC ++G V +G E+FE+M+  Y
Sbjct: 410 MITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSACSYSGKVKEGLELFETMKCKY 469

Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIA 440
            ++P +EHYAC+VDLLGRA  + +A+K V +MP +P++ VW ALL +CR H  +++A +A
Sbjct: 470 QVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIVWGALLGACRTHMKLDLAEVA 529

Query: 441 ANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
             ++ +L   +  G YV LSN  A  G+W  V  LREK+K R V K  GCSW+  E
Sbjct: 530 VEKLAQLEPKN-AGPYVLLSNMYAYKGRWRDVEVLREKIKARSVTKLPGCSWIEVE 584



 Score =  129 bits (323), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 162/338 (47%), Gaps = 69/338 (20%)

Query: 94  GALKYAGQMFDE--LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           G L +A ++FDE  LP RT+S++N M+A Y +  Q  E+L L  K+      P   T S 
Sbjct: 36  GQLDHARKVFDETPLPHRTVSSWNAMVAAYFEARQPREALLLFEKM------PQRNTVS- 88

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
                                                +  L+  ++K G  S AR VFD 
Sbjct: 89  -------------------------------------WNGLISGHIKNGMLSEARRVFDT 111

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY--SISIETARKAL 269
           M ++NV+  TSM+ G++  G V +AE +F     K++V +  M+ G      ++ ARK  
Sbjct: 112 MPDRNVVSWTSMVRGYVRNGDVAEAERLFWHMPHKNVVSWTVMLGGLLQEGRVDDARKLF 171

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
           ++  +       +DV   + ++  Y + G++D+AR +FD M ++NV TWT+M+ GY +NG
Sbjct: 172 DMMPE-------KDVVAVTNMIGGYCEEGRLDEARALFDEMPKRNVVTWTAMVSGYARNG 224

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
             + A +LF +M E     N V++   L    H+G + +   +F++M     +KP +   
Sbjct: 225 KVDVARKLFEVMPE----RNEVSWTAMLLGYTHSGRMREASSLFDAM----PVKPVV--- 273

Query: 390 AC--MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
            C  M+   G  G +++A +    M E+ N   W+A++
Sbjct: 274 VCNEMIMGFGLNGEVDKARRVFKGMKERDNG-TWSAMI 310



 Score = 65.9 bits (159), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 48/186 (25%), Positives = 93/186 (50%), Gaps = 9/186 (4%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L   SL S L   ++  +  +G ++HA + ++    +  ++  L+ +++KCG L  A Q+
Sbjct: 336 LNFPSLISVLSVCVSLASLDHGKQVHAQLVRSEFDQDLYVASVLITMYVKCGNLVRAKQV 395

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           F+  P + +  +N MI GY ++G  EE+L++   + SSG  PD  TF  +L A   C  +
Sbjct: 396 FNRFPLKDVVMWNSMITGYSQHGLGEEALNVFHDMCSSGVPPDDVTFIGVLSA---CSYS 452

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVL--YTALVDSYVKGGKTSYA-RIVFDMMLEKNVIC 219
             +   L      + +KC  + +  +  Y  LVD   +  + + A ++V  M +E + I 
Sbjct: 453 GKVKEGLELF---ETMKCKYQVEPGIEHYACLVDLLGRADQVNEAMKLVEKMPMEPDAIV 509

Query: 220 STSMIS 225
             +++ 
Sbjct: 510 WGALLG 515


>gi|242076488|ref|XP_002448180.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
 gi|241939363|gb|EES12508.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
          Length = 1029

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 145/455 (31%), Positives = 249/455 (54%), Gaps = 14/455 (3%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
            S  +A+    N      G +IH    K  V  N  +   L+ L+ K G ++ + ++   
Sbjct: 530 VSFATAINACSNIRATETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAH 589

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           +   ++   N +I G ++N + +E++ L ++++  G +P  +TF+ IL   T      P+
Sbjct: 590 VDASSMVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCTG-----PV 644

Query: 166 PRNLGRMVHAQILKCDV-KADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNVICSTSM 223
              +G+ VH+  LK  +   D  L  +LV  Y+K      A +++ ++   KN++  T+ 
Sbjct: 645 SSVIGKQVHSYTLKSALLNQDTSLGISLVGIYLKCKLLEDANKLLAEVPDHKNLVEWTAT 704

Query: 224 ISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
           ISG+   G+ + +  +F +     V  D   + ++++  S  I       E+H  +IK+ 
Sbjct: 705 ISGYAQNGYSDQSLVMFWRMRSHDVRSDEATFASVLKACS-EIAALTDGKEIHGLIIKSG 763

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNGNPNQALELF 338
           F       SAL+DMY+KCG +  +  +F  ++ K N+  W SMI G+ KNG  N+AL LF
Sbjct: 764 FVSYETAASALMDMYSKCGDVISSFEIFKELKNKQNIMPWNSMIVGFAKNGYANEALLLF 823

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398
             MQE  ++P+ VT LG L AC HAGL+ +GR +F+SM + Y + P+++HYAC++DLLGR
Sbjct: 824 QKMQESQLKPDEVTLLGVLIACSHAGLISEGRNLFDSMSQVYGIVPRVDHYACLIDLLGR 883

Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVA 458
            G L++A + + ++P + +  +WA  L++C++H D E   +AA ++ ++    R   YV 
Sbjct: 884 GGHLQEAQEVIDQLPFRADGVIWATFLAACQMHKDEERGKVAAKKLVEMEPQ-RSSTYVF 942

Query: 459 LSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           LS+  AAAG W      RE M+ +GV+K  GCSW+
Sbjct: 943 LSSLHAAAGNWVEAKVAREAMREKGVMKFPGCSWI 977



 Score =  125 bits (315), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 92/372 (24%), Positives = 179/372 (48%), Gaps = 20/372 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IHA   K G+  N  +   L+ L++K G +  A ++FD   ++ +  +N M+ G+++
Sbjct: 346 GQQIHAAAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQ 405

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N   EE++ + + +  +    D +TF  +L A     S      ++GR VH   +K  + 
Sbjct: 406 NDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDS-----LDIGRQVHCITIKNSMD 460

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           AD  +  A++D Y K G    A+ +F ++  K+ +   ++I G       E+A  + ++ 
Sbjct: 461 ADLFVANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRM 520

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               +  D V +   I   S +I       ++HC  IK     +  +GS+L+D+Y+K G 
Sbjct: 521 KCYGIAPDEVSFATAINACS-NIRATETGKQIHCASIKYNVCSNHAVGSSLIDLYSKFGD 579

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ++ +R+V  H+   ++    ++I G  +N   ++A+ELF  + +   +P+  TF   LS 
Sbjct: 580 VESSRKVLAHVDASSMVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSG 639

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKM--EHYACMVDLLG---RAGSLEQALKFVLEMPE 414
           C        G+++       Y++K  +  +  +  + L+G   +   LE A K + E+P+
Sbjct: 640 CTGPVSSVIGKQV-----HSYTLKSALLNQDTSLGISLVGIYLKCKLLEDANKLLAEVPD 694

Query: 415 KPNSDVWAALLS 426
             N   W A +S
Sbjct: 695 HKNLVEWTATIS 706



 Score =  125 bits (313), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 87/382 (22%), Positives = 185/382 (48%), Gaps = 13/382 (3%)

Query: 50  SALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQR 109
           S L   IN D+   G ++H    K  +  +  ++  +L ++ K GA+  A  +F  +P +
Sbjct: 433 SVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALFSLIPGK 492

Query: 110 TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL 169
              ++N +I G   N + EE++ +++++   G  PD  +F+  + A +  R+        
Sbjct: 493 DSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRAT-----ET 547

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           G+ +H   +K +V ++  + ++L+D Y K G    +R V   +   +++   ++I+G + 
Sbjct: 548 GKQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSMVPINALITGLVQ 607

Query: 230 QGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFF-EDV 284
               ++A E+F++ ++         + +++ G +  + +     +VH   +K+    +D 
Sbjct: 608 NNREDEAIELFQQVLKDGFKPSNFTFASILSGCTGPVSSV-IGKQVHSYTLKSALLNQDT 666

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHM-QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
            LG +LV +Y KC  ++DA ++   +   KN+  WT+ I GY +NG  +Q+L +F  M+ 
Sbjct: 667 SLGISLVGIYLKCKLLEDANKLLAEVPDHKNLVEWTATISGYAQNGYSDQSLVMFWRMRS 726

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE 403
             V+ +  TF   L AC     +  G+EI   + +   +  +    A M D+  + G + 
Sbjct: 727 HDVRSDEATFASVLKACSEIAALTDGKEIHGLIIKSGFVSYETAASALM-DMYSKCGDVI 785

Query: 404 QALKFVLEMPEKPNSDVWAALL 425
            + +   E+  K N   W +++
Sbjct: 786 SSFEIFKELKNKQNIMPWNSMI 807



 Score =  124 bits (312), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 92/390 (23%), Positives = 187/390 (47%), Gaps = 14/390 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
            L + + + K G  P+    + ++      G L  A  +   +   +  A+N +I+ Y +
Sbjct: 245 ALALFSRMEKMGSAPDQVTYVTIISTLASMGRLSDARTLLKRIQMPSTVAWNAVISSYSQ 304

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +G   E   L + +   G  P   TF+ +L A+    +      + G+ +HA  +K  + 
Sbjct: 305 SGLESEVFGLYKDMKRQGLMPTRSTFASMLSAAASMTA-----FDEGQQIHAAAVKHGLD 359

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
           A+  + ++L++ YVK G  S A+ VFD   EKN++   +M+ GF+     E+  ++F   
Sbjct: 360 ANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYM 419

Query: 241 -RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            R  +E D   + +++ G  I++++     +VHC  IKN    D+ + +A++DMY+K G 
Sbjct: 420 RRADLEADDFTFVSVL-GACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGA 478

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ID A+ +F  +  K+  +W ++I G   N    +A+ +   M+   + P+ V+F  A++A
Sbjct: 479 IDVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINA 538

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK---P 416
           C +    + G++I       Y++       + ++DL  + G +E + K +  +      P
Sbjct: 539 CSNIRATETGKQI-HCASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSMVP 597

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFK 446
            + +   L+ + R  + +E+      + FK
Sbjct: 598 INALITGLVQNNREDEAIELFQQVLKDGFK 627



 Score = 83.6 bits (205), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 67/267 (25%), Positives = 118/267 (44%), Gaps = 18/267 (6%)

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFD-------MMLEKNVICSTSMI 224
           ++HA++L+  +     L  ALVD Y + G+  YA                 + + S    
Sbjct: 77  VLHARVLRLGLPLRGRLGDALVDLYGRSGRVGYAWRALGCCTGAPASGAAASSVLSCHAR 136

Query: 225 SGFMSQGFVEDAEEIFRKTVEKDIVVYN-AMIEGYSISIETARKALEVHCQLIKNVFFED 283
           SG  S   V DA +  R ++      +  A++      +    +  +VHC ++K+ F   
Sbjct: 137 SG--SPRDVLDAFQRLRCSIGGTPDQFGLAVVLSACSRLGALEQGRQVHCDVLKSGFCSS 194

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
               + LVDMYAKC ++ DARRVFD +   +   W SMI GY + G   QAL LF  M++
Sbjct: 195 AFCQAGLVDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALALFSRMEK 254

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE 403
               P+ VT++  +S     G +   R + + ++      P    +  ++    ++G   
Sbjct: 255 MGSAPDQVTYVTIISTLASMGRLSDARTLLKRIQ-----MPSTVAWNAVISSYSQSGLES 309

Query: 404 QALKFVLEMPEK---PNSDVWAALLSS 427
           +      +M  +   P    +A++LS+
Sbjct: 310 EVFGLYKDMKRQGLMPTRSTFASMLSA 336



 Score = 46.2 bits (108), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 41/202 (20%), Positives = 96/202 (47%), Gaps = 9/202 (4%)

Query: 285 KLGSALVDMYAKCGKIDDARRVFD--HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           +LG ALVD+Y + G++  A R          +    +S++  + ++G+P   L+ F  ++
Sbjct: 92  RLGDALVDLYGRSGRVGYAWRALGCCTGAPASGAAASSVLSCHARSGSPRDVLDAFQRLR 151

Query: 343 ECCV--QPNYVTFLGALSACGHAGLVDKGREIF-ESMERDYSMKPKMEHYACMVDLLGRA 399
            C +   P+       LSAC   G +++GR++  + ++  +      +  A +VD+  + 
Sbjct: 152 -CSIGGTPDQFGLAVVLSACSRLGALEQGRQVHCDVLKSGFCSSAFCQ--AGLVDMYAKC 208

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVAL 459
             ++ A + V +    P++  WA++++        + A    + + K+ +      YV +
Sbjct: 209 VEVKDARR-VFDGIACPDTICWASMIAGYHRVGRYQQALALFSRMEKMGSAPDQVTYVTI 267

Query: 460 SNTLAAAGKWDSVTELREKMKL 481
            +TLA+ G+      L +++++
Sbjct: 268 ISTLASMGRLSDARTLLKRIQM 289


>gi|224143620|ref|XP_002325018.1| predicted protein [Populus trichocarpa]
 gi|222866452|gb|EEF03583.1| predicted protein [Populus trichocarpa]
          Length = 695

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 155/478 (32%), Positives = 244/478 (51%), Gaps = 77/478 (16%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
           +L L+ K G ++    +FD +P R   +YN +I+G+  NG+   +L +  ++   G +P 
Sbjct: 95  MLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLRMQKEGLKPT 154

Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
            YT   +L A   C   + L R  G+ +H +I+ C++  +  +  AL D Y + G+   A
Sbjct: 155 EYTHVSVLNA---CTQLLDLRR--GKQIHGRIIICNLGGNVFVCNALTDLYARCGEIDQA 209

Query: 206 RIVFDMMLEKNVICSTSMISGFMSQ----------------------------------- 230
           R +FD M+ +NV+    MISG++                                     
Sbjct: 210 RRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQA 269

Query: 231 GFVEDAEEIFRKTVEKDIVVYNAMI--------------------------EGYSISI-- 262
           G++++A ++F +  EKD V +  MI                          +GY+IS   
Sbjct: 270 GYIDEARKVFGEIREKDEVCWTIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVV 329

Query: 263 -ETARKALEVHCQLIKNVFF-----EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF 316
              A+ A   H Q++    F     +D+ + SALVDMY KCG   DA  +F  MQ +NV 
Sbjct: 330 SSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVV 389

Query: 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM 376
           +W SMI GY  NG   +AL L+  M E  ++P+ VTF+G LSAC HAGLV++G+E F SM
Sbjct: 390 SWNSMIGGYALNGQDLEALSLYENMLEENLKPDSVTFVGVLSACVHAGLVEEGKEYFCSM 449

Query: 377 ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEM 436
              + ++P  +HYACMV+L GR+G +++A+  +  M ++PNS +W  +LS C +  D++ 
Sbjct: 450 SDQHGLEPTPDHYACMVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVLSVCVMKGDIKH 509

Query: 437 ANIAANEIFKLNA-NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             +AA  + +LN  N  P  Y+ LSN  AA G+W  V  +R  MK + V K +  SW+
Sbjct: 510 GEMAARCLIELNPFNAVP--YIMLSNMYAARGRWKDVASIRSLMKSKHVKKFSAYSWI 565



 Score =  131 bits (329), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 102/370 (27%), Positives = 167/370 (45%), Gaps = 48/370 (12%)

Query: 155 ASTCCR-SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
           A  C R S+V   + L   +H  + K +   D  ++  L++ Y K G+ S+AR +FD M 
Sbjct: 29  ALECFRASDVDQAKRLKSHMHLHLFKPN---DTFIHNRLLNLYAKSGEISHARKLFDEMT 85

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS-------------- 259
           +++     +M+S +   G VED   IF     +D V YN +I G++              
Sbjct: 86  QRDNFSWNAMLSLYAKSGLVEDLRVIFDNMPSRDSVSYNTVISGFAGNGRGGPALGVFLR 145

Query: 260 -------------ISIETA-------RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
                        +S+  A       R+  ++H ++I      +V + +AL D+YA+CG+
Sbjct: 146 MQKEGLKPTEYTHVSVLNACTQLLDLRRGKQIHGRIIICNLGGNVFVCNALTDLYARCGE 205

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           ID ARR+FD M  +NV TW  MI GY KN  P + ++LF  MQ   ++P+ VT    L A
Sbjct: 206 IDQARRLFDRMVIRNVVTWNLMISGYLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGA 265

Query: 360 CGHAGLVDKGREIF-ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM---PEK 415
              AG +D+ R++F E  E+D         +  M+    + G  E AL    EM     +
Sbjct: 266 YIQAGYIDEARKVFGEIREKDEVC------WTIMIVGCAQNGKEEDALLLFSEMLLENAR 319

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
           P+    ++++SSC     +    +   + F +  ND      AL +     G       +
Sbjct: 320 PDGYTISSVVSSCAKLASLYHGQVVHGKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTI 379

Query: 476 REKMKLRGVL 485
              M+ R V+
Sbjct: 380 FSTMQTRNVV 389



 Score = 86.3 bits (212), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 66/274 (24%), Positives = 128/274 (46%), Gaps = 12/274 (4%)

Query: 55  YINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAY 114
           Y+ +  P   + +   +  + +KP+   +  +L  +++ G +  A ++F E+ ++    +
Sbjct: 231 YLKNRQPEKCIDLFHEMQVSNLKPDQVTASSVLGAYIQAGYIDEARKVFGEIREKDEVCW 290

Query: 115 NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH 174
             MI G  +NG+ E++L L  +++    RPDGYT S ++ +   C     L    G++VH
Sbjct: 291 TIMIVGCAQNGKEEDALLLFSEMLLENARPDGYTISSVVSS---CAKLASLYH--GQVVH 345

Query: 175 AQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVE 234
            +     V  D ++ +ALVD Y K G T  A  +F  M  +NV+   SMI G+   G   
Sbjct: 346 GKAFLMGVNDDLLVSSALVDMYCKCGVTRDAWTIFSTMQTRNVVSWNSMIGGYALNGQDL 405

Query: 235 DA----EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSA- 289
           +A    E +  + ++ D V +  ++    +      +  E  C +      E      A 
Sbjct: 406 EALSLYENMLEENLKPDSVTFVGVLSA-CVHAGLVEEGKEYFCSMSDQHGLEPTPDHYAC 464

Query: 290 LVDMYAKCGKIDDARRVFDHM-QQKNVFTWTSMI 322
           +V+++ + G +D A  +   M Q+ N   WT+++
Sbjct: 465 MVNLFGRSGHMDKAVDLISSMSQEPNSLIWTTVL 498


>gi|242096366|ref|XP_002438673.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
 gi|241916896|gb|EER90040.1| hypothetical protein SORBIDRAFT_10g024090 [Sorghum bicolor]
          Length = 588

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 139/436 (31%), Positives = 247/436 (56%), Gaps = 36/436 (8%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA +   G +P   ++ +L+I++ +CGAL+ A  + D +P+R + ++  MI+GY +
Sbjct: 54  GRQVHARMVAAGYRPALYLATRLVIMYARCGALEDARNVLDGMPERNVVSWTAMISGYSQ 113

Query: 124 NGQVEESLSLVRKLVSSGERPDGY--TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
           N                 ERPD     F M+L+A            +  + VHA  +K +
Sbjct: 114 N-----------------ERPDQAWELFIMMLRAGI----------HQVKQVHAFAVKTN 146

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
            +    + ++L+D Y K      AR VFDM+  ++V+  T+++SG+   G  E+A ++FR
Sbjct: 147 FELHMFVGSSLLDMYAKSENIQEARRVFDMLPARDVVSYTAILSGYTQLGLDEEALDLFR 206

Query: 242 ----KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
               + ++ + V + A++   S  + +     +VH  +++      + L ++L+DMY+KC
Sbjct: 207 LLYNEGMQCNQVTFTALLNALS-GLSSMDYGKQVHGLILRRELPFFMALQNSLIDMYSKC 265

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           GK+  +RRVFD M +++V +W +M+ GYG++G  ++ ++LF  M +  V+P+ VT L  L
Sbjct: 266 GKLLYSRRVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSMCDE-VKPDSVTLLAVL 324

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           S   H GLVD+G ++F+ + ++ S     EHY C++DLLGR+G L++AL  + +MP +P 
Sbjct: 325 SGYSHGGLVDEGLDMFDHIVKEQSTLLNTEHYGCVIDLLGRSGQLQKALNLIEKMPFQPT 384

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
             +W +LL +CR+H +V +    A ++  +   +  G YV LSN  AAAG W  V  +R+
Sbjct: 385 RAIWGSLLGACRVHTNVHVGEFVAQKLLDIEPEN-AGNYVILSNIYAAAGMWKDVFRVRK 443

Query: 478 KMKLRGVLKDTGCSWV 493
            M  + V+K+ G SW+
Sbjct: 444 LMLKKTVIKEPGRSWM 459



 Score = 79.0 bits (193), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/76 (44%), Positives = 51/76 (67%)

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
           R+  +VH +++   +   + L + LV MYA+CG ++DAR V D M ++NV +WT+MI GY
Sbjct: 52  REGRQVHARMVAAGYRPALYLATRLVIMYARCGALEDARNVLDGMPERNVVSWTAMISGY 111

Query: 326 GKNGNPNQALELFCMM 341
            +N  P+QA ELF MM
Sbjct: 112 SQNERPDQAWELFIMM 127



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 4/113 (3%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           N +T T+L +AL    + D   YG ++H  I +  +     +   L+ ++ KCG L Y+ 
Sbjct: 216 NQVTFTALLNALSGLSSMD---YGKQVHGLILRRELPFFMALQNSLIDMYSKCGKLLYSR 272

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
           ++FD +P+R++ ++N M+ GY ++G   E + L R +     +PD  T   +L
Sbjct: 273 RVFDSMPERSVVSWNAMLMGYGRHGLAHEVVQLFRSMCDE-VKPDSVTLLAVL 324


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  251 bits (640), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 139/447 (31%), Positives = 239/447 (53%), Gaps = 11/447 (2%)

Query: 51  ALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRT 110
           AL+   +S    YG +IHA   K G   ++ ++  L  ++ KCG L+Y   +F+++  R 
Sbjct: 223 ALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRD 282

Query: 111 LSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR-NL 169
           + ++  +I   ++ GQ E ++    ++  S   P+ YTF+ ++  S C      L R   
Sbjct: 283 VVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVI--SGCAN----LARIEW 336

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           G  +HA IL   + A   +  +++  Y K G+ + + ++F  M  ++++  +++I+G+  
Sbjct: 337 GEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQ 396

Query: 230 QGFVEDAEEIF---RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
            G V +A E+    R    K      A +     ++       ++H  ++         +
Sbjct: 397 GGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMV 456

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
            SAL++MY KCG I++A R+FD  +  ++ +WT+MI+GY ++G   + ++LF  +    +
Sbjct: 457 LSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGL 516

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
           +P+ VTF+G LSAC HAGLVD G   F +M + Y + P  EHY CM+DLL RAG L  A 
Sbjct: 517 RPDSVTFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAE 576

Query: 407 KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
             +  MP   +  VW+ LL +CR+H DVE     A  I +L  N   G ++ L+N  A+ 
Sbjct: 577 HMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNC-AGTHITLANIYASK 635

Query: 467 GKWDSVTELREKMKLRGVLKDTGCSWV 493
           GKW    ++R+ MK +GV+K+ G SW+
Sbjct: 636 GKWREAADIRKLMKSKGVIKEPGWSWI 662



 Score =  145 bits (367), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 194/388 (50%), Gaps = 29/388 (7%)

Query: 56  INSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYN 115
           +NSD   YG  +H +  KTG+  +  +   LL ++ K G +    ++F E+P R + ++ 
Sbjct: 128 LNSDVN-YGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWT 186

Query: 116 YMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA 175
            +I G ++ G  +E+L    ++  S    D YTF++ LKA   C  +  L  N GR +HA
Sbjct: 187 AIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKA---CADSGAL--NYGREIHA 241

Query: 176 QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
           Q +K        +   L   Y K GK  Y   +F+ M  ++V+  T++I+  +  G  E 
Sbjct: 242 QAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEEC 301

Query: 236 AEEIFRKTVEKDI----VVYNAMIEGYS--ISIETARK--ALEVHCQLIKNVFFEDVKLG 287
           A + F +  E D+      + A+I G +    IE   +  AL +H  L  ++  E+    
Sbjct: 302 AVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVEN---- 357

Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347
            +++ MYAKCG++  +  +F  M ++++ +W+++I GY + G+ ++A EL   M+    +
Sbjct: 358 -SIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEAFELLSWMRMEGPK 416

Query: 348 PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA----CMVDLLGRAGSLE 403
           P        LSACG+  +++ G+++       Y +   +EH A     ++++  + GS+E
Sbjct: 417 PTEFALASVLSACGNMAILEHGKQL-----HAYVLSIGLEHTAMVLSALINMYCKCGSIE 471

Query: 404 QALKFVLEMPEKPNSDVWAALLSSCRLH 431
           +A + + +  E  +   W A+++    H
Sbjct: 472 EASR-IFDAAENDDIVSWTAMINGYAEH 498



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 150/300 (50%), Gaps = 14/300 (4%)

Query: 78  PNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL 137
           P +N  +K L+   K G L  A +MFD++ Q+   ++  +I+GY+      E+L L + +
Sbjct: 50  PESNKQLKELV---KTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNM 106

Query: 138 -VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196
            V SG R D +  S+  KA   C  N  +  N G ++H   +K  +     + +AL+D Y
Sbjct: 107 RVESGLRIDPFILSLAHKA---CGLNSDV--NYGELLHGYAVKTGLVNSVFVGSALLDMY 161

Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEIFRKTVEKDIVVYN 252
            K GK    R VF  M  +NV+  T++I+G +  G+ ++A     E++R  VE D   + 
Sbjct: 162 TKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFA 221

Query: 253 AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ 312
             ++  + S        E+H Q +K  F     + + L  MY KCGK++    +F+ M  
Sbjct: 222 IALKACADS-GALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSM 280

Query: 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           ++V +WT++I    + G    A++ F  M+E  V PN  TF   +S C +   ++ G ++
Sbjct: 281 RDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQL 340



 Score = 94.0 bits (232), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 130/274 (47%), Gaps = 47/274 (17%)

Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAM-I 255
           VK G    AR +FD M +K+ I  T++ISG+++     +A  +F     K++ V + + I
Sbjct: 60  VKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLF-----KNMRVESGLRI 114

Query: 256 EGYSISIETARKALE--------VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVF 307
           + + +S+      L         +H   +K      V +GSAL+DMY K GKI + RRVF
Sbjct: 115 DPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVF 174

Query: 308 DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367
             M  +NV +WT++I G  + G   +AL  F  M    V+ +  TF  AL AC  +G ++
Sbjct: 175 HEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALN 234

Query: 368 KGREIF-ESMERDYSMKP--------------KMEH---------------YACMVDLLG 397
            GREI  ++M++ + +                K+E+               +  ++  L 
Sbjct: 235 YGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLV 294

Query: 398 RAGSLEQALKFVLEMPE---KPNSDVWAALLSSC 428
           + G  E A++  + M E    PN   +AA++S C
Sbjct: 295 QMGQEECAVQAFIRMRESDVSPNEYTFAAVISGC 328



 Score = 60.8 bits (146), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 94/205 (45%), Gaps = 11/205 (5%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           T  +L S L    N     +G ++HA++   G++    +   L+ ++ KCG+++ A ++F
Sbjct: 418 TEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIF 477

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           D      + ++  MI GY ++G   E + L  K+   G RPD  TF  +L  S C  + +
Sbjct: 478 DAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVL--SACSHAGL 535

Query: 164 PLPRNLG-RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM-LEKNVICST 221
               +LG    +A   K  +      Y  ++D   + G+ S A  + + M   ++ +  +
Sbjct: 536 V---DLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWS 592

Query: 222 SMISGFMSQGFVEDAEEIFRKTVEK 246
           +++      G VE      R+T E+
Sbjct: 593 TLLRACRVHGDVERG----RRTAER 613


>gi|356573514|ref|XP_003554903.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66500,
           mitochondrial-like [Glycine max]
          Length = 530

 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 152/438 (34%), Positives = 244/438 (55%), Gaps = 16/438 (3%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G ++HA + KTG    T     LL ++ KCG+L  A ++FDE+  R + A+N +++ +L
Sbjct: 88  FGTQVHAQMLKTGADSGTVAKTALLDMYSKCGSLDEATKVFDEMRHRDVVAWNALLSCFL 147

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           +     E++ ++R++         +T    LK+    ++       LGR VH  ++ C  
Sbjct: 148 RCDLPVEAVGVLREMGRENVELSEFTLCSALKSCALLKA-----LELGRQVHGLVV-CMG 201

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMM--LEKNVICSTSMISGFMSQGFVEDAEEIF 240
           +   VL TALVD Y   G    A  VF  +    K+ +   SM+SG +     ++A  + 
Sbjct: 202 RDLVVLSTALVDFYTSVGCVDDALKVFYSLKGCWKDDMMYNSMVSGCVRSRRYDEAFRVM 261

Query: 241 RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
              V  + V   + + G S +++      ++HC   +  F  D +L +AL+DMYAKCG+I
Sbjct: 262 -GFVRPNAVALTSALVGCSENLDLW-AGKQIHCVAFRWAFTFDTQLCNALLDMYAKCGRI 319

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC--VQPNYVTFLGALS 358
             A  VF  + +K+V +WT MID YG+NG   +A+E+F  M+E    V PN VTFL  LS
Sbjct: 320 SQALSVFHGICEKDVISWTCMIDAYGRNGQGREAVEVFREMREVGSKVLPNSVTFLSVLS 379

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQ---ALKFVLEMPEK 415
           A GH+GLV++G+  F+ +   Y ++P  EHYAC +D+LGRAG++E+   A   ++    +
Sbjct: 380 ASGHSGLVEEGKNCFKLLREKYGLQPDPEHYACYIDILGRAGNIEEVWYAYHNMVVQGTR 439

Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
           P + VW ALL++C L+ DVE + +AA  + +L  N +    V +SN  AA  +WD V EL
Sbjct: 440 PTAGVWVALLNACSLNQDVERSELAAKHLLQLEPN-KASNIVLVSNFYAAIDRWDCVEEL 498

Query: 476 REKMKLRGVLKDTGCSWV 493
           R  M+ +G+ K+ G SW+
Sbjct: 499 RSIMRTKGLAKEAGNSWI 516



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 114/445 (25%), Positives = 184/445 (41%), Gaps = 81/445 (18%)

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSL---VRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           PQ  +S  N +IA Y++ G    +L+L   +R+   S    D YTF+ IL+AS+  R   
Sbjct: 27  PQLYISQTNSLIASYVRRGDPVSALTLFHSLRRRAHSDVVADAYTFTSILRASSLLR--- 83

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
            +    G  VHAQ+LK    +  V  TAL+D Y K G    A  VFD M  ++V+   ++
Sbjct: 84  -VSGQFGTQVHAQMLKTGADSGTVAKTALLDMYSKCGSLDEATKVFDEMRHRDVVAWNAL 142

Query: 224 ISGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSI--SIETARKALEVHCQLIK 277
           +S F+      +A     E+ R+ VE       + ++  ++  ++E  R   +VH  L+ 
Sbjct: 143 LSCFLRCDLPVEAVGVLREMGRENVELSEFTLCSALKSCALLKALELGR---QVH-GLVV 198

Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ--QKNVFTWTSMIDGYGKNGNPNQAL 335
            +  + V L +ALVD Y   G +DDA +VF  ++   K+   + SM+ G  ++   ++A 
Sbjct: 199 CMGRDLVVLSTALVDFYTSVGCVDDALKVFYSLKGCWKDDMMYNSMVSGCVRSRRYDEAF 258

Query: 336 ELFCMMQECCVQPNYVTFLGALSACGH--------------------------------- 362
            +        V+PN V    AL  C                                   
Sbjct: 259 RVMGF-----VRPNAVALTSALVGCSENLDLWAGKQIHCVAFRWAFTFDTQLCNALLDMY 313

Query: 363 --AGLVDKGREIFESM-ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK---- 415
              G + +   +F  + E+D      +  + CM+D  GR G   +A++   EM E     
Sbjct: 314 AKCGRISQALSVFHGICEKD------VISWTCMIDAYGRNGQGREAVEVFREMREVGSKV 367

Query: 416 -PNSDVWAALLSSCRLHDDVEMANIAANEIFKL-----NANDRPGAYVALSNTLAAAGKW 469
            PNS  + ++LS+      VE         FKL          P  Y    + L  AG  
Sbjct: 368 LPNSVTFLSVLSASGHSGLVE----EGKNCFKLLREKYGLQPDPEHYACYIDILGRAGNI 423

Query: 470 DSVTELREKMKLRGVLKDTGCSWVG 494
           + V      M ++G  + T   WV 
Sbjct: 424 EEVWYAYHNMVVQGT-RPTAGVWVA 447


>gi|359492781|ref|XP_002278504.2| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 658

 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 147/465 (31%), Positives = 242/465 (52%), Gaps = 52/465 (11%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGA-LKYAGQMFDELPQRTLSAYNYMIAGYL 122
           G  IH  I K G   +  +   LL  +  C   L  A ++F+E+P+R + ++N MI+ Y+
Sbjct: 93  GRVIHGEILKLGFGSSVFVQNSLLGFYANCSENLGSAYRVFEEMPERDVISWNSMISAYM 152

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQI-LKCD 181
             G+++ ++ L+ K+    ER      +++   S  C  +      L   V  Q+ L+  
Sbjct: 153 TRGEIQSAIGLLDKM---PER------NIVTWNSVVCGLSKAGNMELAHSVFEQMPLR-- 201

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
              ++V + +++  YV+ G    A+ +F  M EK V+  T+MISG+ + G ++ AE IF 
Sbjct: 202 ---NEVSWNSMISGYVRIGDVRAAQSIFYQMPEKTVVSWTAMISGYATNGDLKSAENIFN 258

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLI------------------------- 276
               K++V +NAMI GY  + E  +     H  LI                         
Sbjct: 259 HMPVKNVVSWNAMISGYVHNHEFDQALCVFHHMLINGECRPDQTTLISILSACAHLGSLE 318

Query: 277 ----------KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
                     KN     + LG+AL+DM+AKCG +++A+ VF HM ++ + TWT+M+ G  
Sbjct: 319 HGKWINSYIKKNKLHLSIPLGNALIDMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLA 378

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM 386
            NG   +A+ LF  M     +P+ V F+  LSAC H GLV++G+ +F+ M +++ +KP++
Sbjct: 379 VNGKCREAINLFDKMCLEGTKPDDVIFIAVLSACTHGGLVEEGKRVFDQMVQEFGIKPRI 438

Query: 387 EHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446
           EHY CMVDLLGRAG LE+A++F   M  KPN+ +WA LL  C++H + ++      +I  
Sbjct: 439 EHYGCMVDLLGRAGKLEEAVRFTARMHLKPNAVIWATLLFCCKIHGNGDLLKSVTEKIMD 498

Query: 447 LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
              ++ P     +SN  A+ G+W+ V   R  M+ + + K  GCS
Sbjct: 499 QEPSN-PSYLTLVSNLSASFGRWEDVLSFRVAMRQQRMEKVPGCS 542



 Score = 53.9 bits (128), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 46/198 (23%), Positives = 89/198 (44%), Gaps = 8/198 (4%)

Query: 28  TFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLL 87
            F   L N +   +  T  S+ SA  H  + +   +G  I+++I K  +  +  +   L+
Sbjct: 287 VFHHMLINGECRPDQTTLISILSACAHLGSLE---HGKWINSYIKKNKLHLSIPLGNALI 343

Query: 88  ILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGY 147
            +  KCG ++ A ++F  + +R +  +  M++G   NG+  E+++L  K+   G +PD  
Sbjct: 344 DMFAKCGDVENAKEVFHHMSKRCIITWTTMVSGLAVNGKCREAINLFDKMCLEGTKPDDV 403

Query: 148 TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA-R 206
            F  +L A T    +  L     R+    + +  +K     Y  +VD   + GK   A R
Sbjct: 404 IFIAVLSACT----HGGLVEEGKRVFDQMVQEFGIKPRIEHYGCMVDLLGRAGKLEEAVR 459

Query: 207 IVFDMMLEKNVICSTSMI 224
               M L+ N +   +++
Sbjct: 460 FTARMHLKPNAVIWATLL 477


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 151/480 (31%), Positives = 253/480 (52%), Gaps = 39/480 (8%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTG-VKPNTNISIKLLILHLKCGALKYAGQ 101
           +T  S+  A  H    D    G +IHA++ +   +  N+ +   L+ ++  C  ++   +
Sbjct: 298 VTIASVLPACSHLERLDV---GKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRR 354

Query: 102 MFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVS-SGERPDGYTFSMILKASTCCR 160
           +FD +  R +  +N MI+GY +NG  E++L L  +++  +G  P+  T + ++ A   C 
Sbjct: 355 VFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCE 414

Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
           +      +    +H   +K   K D  +  AL+D Y + GK   +  +FD M  ++ +  
Sbjct: 415 A-----FSNKESIHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSW 469

Query: 221 TSMISGFMSQGFVEDAEEIFRKT---------------------VEKDIVVYNAMIEGYS 259
            +MI+G++  G   +A  +  +                       + + +    ++ G +
Sbjct: 470 NTMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCA 529

Query: 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWT 319
            ++    K  E+H   I+N+   D+ +GSALVDMYAKCG ++ +RRVF+ M  KNV TW 
Sbjct: 530 -ALAAIAKGKEIHAYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWN 588

Query: 320 SMIDGYGKNGNPNQALELF-CMMQECC----VQPNYVTFLGALSACGHAGLVDKGREIFE 374
            +I   G +G   +ALELF  M+ E       +PN VTF+   +AC H+GL+ +G  +F 
Sbjct: 589 VLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFY 648

Query: 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP-EKPNSDVWAALLSSCRLHDD 433
            M+ D+ ++P  +HYAC+VDLLGRAG LE+A + V  MP E      W++LL +CR+H +
Sbjct: 649 RMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQN 708

Query: 434 VEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           VE+  +AA  +  L  N     YV LSN  ++AG W+   E+R+ M+  GV K+ GCSW+
Sbjct: 709 VELGEVAAKNLLHLEPN-VASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWI 767



 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/372 (26%), Positives = 170/372 (45%), Gaps = 39/372 (10%)

Query: 5   SRIRSSVFSSTHNRHYTLV-----PPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSD 59
           SR RS+ F    + +  +      P N  FP  L+    L +  T               
Sbjct: 66  SRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKT--------------- 110

Query: 60  TPFYGLKIHAHITKTGVKPNT-NISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMI 118
               G +IHA   K G   ++  ++  L+ ++ KCG +    ++FD +  R   ++N  I
Sbjct: 111 ----GEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFI 166

Query: 119 AGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
           A   +  + E++L   R +    E  +  +F+++  A  C    V     LG+ +H   L
Sbjct: 167 AALCRFEKWEQALEAFRAM--QMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSL 224

Query: 179 KCDVKADDVLYT--ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
           +     D   +T  AL+  Y K G+   ++ +F+  ++++++   +MIS F       +A
Sbjct: 225 RV---GDQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEA 281

Query: 237 EEIFR----KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNV-FFEDVKLGSALV 291
              FR    + VE D V   +++   S  +E      E+H  +++N    E+  +GSALV
Sbjct: 282 LAFFRLMVLEGVELDGVTIASVLPACS-HLERLDVGKEIHAYVLRNNDLIENSFVGSALV 340

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC-MMQECCVQPNY 350
           DMY  C +++  RRVFDH+  + +  W +MI GY +NG   +AL LF  M++   + PN 
Sbjct: 341 DMYCNCRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNT 400

Query: 351 VTFLGALSACGH 362
            T    + AC H
Sbjct: 401 TTMASVMPACVH 412



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/365 (22%), Positives = 161/365 (44%), Gaps = 50/365 (13%)

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P R+ +++   +    ++    E++S   ++  SG RPD + F  +LKA +  +      
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQD----- 107

Query: 167 RNLGRMVHAQILKCDVKADDV-LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
              G  +HA  +K    +  V +   LV+ Y K G       VFD + +++ +   S I+
Sbjct: 108 LKTGEQIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIA 167

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
                   E A E FR    +++ + +  +   S+++  +   +    +L K +    ++
Sbjct: 168 ALCRFEKWEQALEAFRAMQMENMELSSFTL--VSVALACSNLGVMHGLRLGKQLHGYSLR 225

Query: 286 LG-------SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
           +G       +AL+ MYAK G++DD++ +F+    +++ +W +MI  + ++   ++AL  F
Sbjct: 226 VGDQKTFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFF 285

Query: 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREI-------------------------- 372
            +M    V+ + VT    L AC H   +D G+EI                          
Sbjct: 286 RLMVLEGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCN 345

Query: 373 ---FESMER--DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK----PNSDVWAA 423
               ES  R  D+ +  ++E +  M+    R G  E+AL   +EM +     PN+   A+
Sbjct: 346 CRQVESGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMAS 405

Query: 424 LLSSC 428
           ++ +C
Sbjct: 406 VMPAC 410


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 142/470 (30%), Positives = 249/470 (52%), Gaps = 42/470 (8%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKC------------------------------ 93
           GL+IH H+ K G + +  +   L+ ++++                               
Sbjct: 82  GLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTALVTGYAS 141

Query: 94  -GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
            G ++ A  MFDE+P + + ++N MI+GY++ G  +E+L L ++++ +  RPD  T   +
Sbjct: 142 RGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDESTMVTV 201

Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
           + AS   RS       LGR VH+ I      ++  +  AL+D Y K G+   A  +F  +
Sbjct: 202 ISASA--RSG---SIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEMETACGLFLGL 256

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE-----KDIVVYNAMIEGYSISIETARK 267
             K+VI    +I G+      ++A  +F++ +       D+ + + +     +      +
Sbjct: 257 SYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDIGR 316

Query: 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
            + V+             L ++L+DMY+KCG I+ A +VF+ M  K++  W +MI G+  
Sbjct: 317 WIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIFGFAM 376

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           +G  N A ++F  M++  ++P+ +TF+G LSAC HAG++D GR IF SM  +Y + PK+E
Sbjct: 377 HGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLE 436

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           HY CM+DLLG +G  ++A + +  M  +P+  +W +LL +C++H +VE+    A  +FK+
Sbjct: 437 HYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQNLFKI 496

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTES 497
             N+ PG+YV LSN  A AG+W+ V  +R  +  +G+ K  GCS +  +S
Sbjct: 497 EPNN-PGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDS 545



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 118/452 (26%), Positives = 203/452 (44%), Gaps = 57/452 (12%)

Query: 84  IKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGER 143
           ++  IL      L YA  +F+ + +  L  +N M  G+  +     +L L   ++S G  
Sbjct: 1   LEFCILSPHFEGLPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLL 60

Query: 144 PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTS 203
           P+ YTF  +LK+    +++       G  +H  +LK   + D  ++T+L+  YV+  +  
Sbjct: 61  PNSYTFPFLLKSCAKLKASKE-----GLQIHGHVLKLGYELDLYVHTSLISMYVQNERLE 115

Query: 204 YARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY----- 258
            A  VFD    ++V+  T++++G+ S+G++E A  +F +   KD+V +NAMI GY     
Sbjct: 116 DAHKVFDRSSHRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGN 175

Query: 259 --------------------------------SISIETARKALEVHCQLIKNVFFEDVKL 286
                                           S SIE  R   +VH  +  + F  ++K+
Sbjct: 176 YKEALELFKEMMKTNVRPDESTMVTVISASARSGSIELGR---QVHSWIADHGFGSNLKI 232

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
            +AL+D Y+KCG+++ A  +F  +  K+V +W  +I GY       +AL LF  M     
Sbjct: 233 VNALIDFYSKCGEMETACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGE 292

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESME-RDYSMKPKMEHYACMVDLLGRAGSLEQA 405
            PN VT L  L AC H G +D GR I   ++ R   +         ++D+  + G +E A
Sbjct: 293 SPNDVTMLSILHACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAA 352

Query: 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND-RPG--AYVALSNT 462
            +    M  K +   W A++    +H     AN A +   ++  N+ +P    +V L + 
Sbjct: 353 HQVFNSMLHK-SLPAWNAMIFGFAMHGR---ANAAFDIFSRMRKNEIKPDDITFVGLLSA 408

Query: 463 LAAAGKWDSVTELREKM----KLRGVLKDTGC 490
            + AG  D    +   M    K+   L+  GC
Sbjct: 409 CSHAGMLDLGRHIFRSMTHNYKITPKLEHYGC 440



 Score = 52.4 bits (124), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 5/119 (4%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITK--TGVKPNTNISIKLLILHLKCGALKY 98
           N +T  S+  A  H    D    G  IH +I K   GV   +++   L+ ++ KCG ++ 
Sbjct: 295 NDVTMLSILHACAHLGAIDI---GRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEA 351

Query: 99  AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           A Q+F+ +  ++L A+N MI G+  +G+   +  +  ++  +  +PD  TF  +L A +
Sbjct: 352 AHQVFNSMLHKSLPAWNAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACS 410


>gi|297829702|ref|XP_002882733.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328573|gb|EFH58992.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 620

 Score =  251 bits (640), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 157/502 (31%), Positives = 266/502 (52%), Gaps = 17/502 (3%)

Query: 1   MPNLSRIRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSL----SNPLTATSLPSALQHYI 56
           +P+  R  S+V S++ N     +     F   +  Y S+    S+P  A S P  L+   
Sbjct: 4   VPSFVR-NSAVASTSWNVRLRELAYQSLFTESISLYRSMLRSGSSP-DAFSFPFILKSCA 61

Query: 57  NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL--SAY 114
           +   P  G ++H H+ + G +    +   L+ ++ KCG ++ A ++F+E P  +     Y
Sbjct: 62  SLSLPVSGQQLHCHVIRGGCEAEPFVLTALISMYCKCGLVEDARKVFEENPHSSQLGVCY 121

Query: 115 NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH 174
           N +I+GY  N +V ++  + R++  +G   D  T   IL     C   VP    LGR +H
Sbjct: 122 NALISGYTANSKVSDAAFMFRRMKETGVSVDSVT---ILGLVPLC--TVPEYLWLGRSLH 176

Query: 175 AQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVE 234
            + +K    ++  +  + +  Y+K G     R +FD M  K +I   ++ISG+   G   
Sbjct: 177 GECVKGGTYSEVAVLNSFITMYMKCGSVESGRRLFDEMPVKGLITWNAVISGYSQNGLAY 236

Query: 235 DAEEIFRKTVEKDIVV--YNAMIEGYSISIETARKALEVHCQLIK-NVFFEDVKLGSALV 291
           D  E+F +     +    +  +    S +   A+K  +   +L++ N F  +V L +AL+
Sbjct: 237 DVLELFEQMKSSGVCPDPFTLVSVLSSCAHLGAKKIGQEVGELVEANGFAPNVFLSNALI 296

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
            MYA+CG +  AR VFD M  K++ +WT+MI  YG +G     L LF  M +  ++P+  
Sbjct: 297 SMYARCGNLAKARAVFDIMPVKSLVSWTAMIGCYGMHGMGETGLTLFDDMIKRGIRPDGA 356

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
            F+  LSAC H+GL DKG E+F +M+R+Y ++P  EHY+C+VDLLGRAG L++A++F+  
Sbjct: 357 VFVMVLSACSHSGLTDKGLELFRAMKREYKLEPGPEHYSCLVDLLGRAGRLDEAMEFIDS 416

Query: 412 MPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471
           MP +P+  VW ALL +C++H +V+MA +A  ++ +    +  G YV +SN  + +   + 
Sbjct: 417 MPVEPDGAVWGALLGACKIHKNVDMAELAFAKVIEFEPMN-IGYYVLMSNIYSDSKNQEG 475

Query: 472 VTELREKMKLRGVLKDTGCSWV 493
           +  +R  M+ R   K  G S+V
Sbjct: 476 IWRIRVMMRERAFRKKPGYSYV 497


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  250 bits (639), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 146/436 (33%), Positives = 236/436 (54%), Gaps = 12/436 (2%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G  +H +  +        +   LL ++ KC  L YA ++FD +  R   +++ MI GY+
Sbjct: 228 HGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYV 287

Query: 123 KNGQVEESLSLVRKLV-SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            +  ++E+L L  +++      P   T   +L+A   C     L R  GR +H  I+K  
Sbjct: 288 ASDCMKEALELFDQMILKDAMDPTPVTLGSVLRA---CAKLTDLSR--GRKLHCYIIKLG 342

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
              D +L   L+  Y K G    A   FD M  K+ +  ++++SG +  G    A  IFR
Sbjct: 343 SVLDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFR 402

Query: 242 ----KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
                 ++ D+     ++   S  +   +     H  LI   F  D  + +AL+DMY+KC
Sbjct: 403 MMQLSGIDPDLTTMLGVLPACS-HLAALQHGFCSHGYLIVRGFATDTLICNALIDMYSKC 461

Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
           GKI  AR VF+ M + ++ +W +MI GYG +G   +AL LF  +    ++P+ +TF+  L
Sbjct: 462 GKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLL 521

Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
           S+C H+GLV +GR  F++M RD+S+ P+MEH  CMVD+LGRAG +++A  F+  MP +P+
Sbjct: 522 SSCSHSGLVMEGRLWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPD 581

Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
             +W+ALLS+CR+H ++E+    + +I  L   +  G +V LSN  +AAG+WD    +R 
Sbjct: 582 VRIWSALLSACRIHKNIELGEEVSKKIQSLGP-ESTGNFVLLSNIYSAAGRWDDAAHIRI 640

Query: 478 KMKLRGVLKDTGCSWV 493
             K  G+ K  GCSW+
Sbjct: 641 TQKDWGLKKIPGCSWI 656



 Score =  148 bits (374), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 115/403 (28%), Positives = 206/403 (51%), Gaps = 21/403 (5%)

Query: 52  LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL 111
           L+  I S +     KIH H  K     ++++  KL  L+L C  +  A ++FDE+P  ++
Sbjct: 15  LEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRLFDEIPNPSV 74

Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR 171
             +N +I  Y  NG  + ++ L   ++  G RP+ YT+  +LKA   C   + +   +  
Sbjct: 75  ILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKA---CSGLLAIEDGVEI 131

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
             HA++    +++D  + TALVD Y K G    A+ +F  M  ++V+   +MI+G    G
Sbjct: 132 HSHAKMF--GLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAGCSLYG 189

Query: 232 FVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETAR-----KALEVHCQLIKNVFFEDVKL 286
             +DA ++  +  E+ I   ++ I G   ++  A+     KAL  +C  ++  F   V +
Sbjct: 190 LCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYC--VRRSFDNGVVV 247

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF-CMMQECC 345
           G+ L+DMYAKC  +  AR++FD M  +N  +W++MI GY  +    +ALELF  M+ +  
Sbjct: 248 GTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMILKDA 307

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
           + P  VT    L AC     + +GR++   + +  S+   +     ++ +  + G ++ A
Sbjct: 308 MDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGSVLDILLGNT-LLSMYAKCGVIDDA 366

Query: 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIA-ANEIFKL 447
           ++F  EM  K +S  ++A++S C     V+  N A A  IF++
Sbjct: 367 IRFFDEMNPK-DSVSFSAIVSGC-----VQNGNAAVALSIFRM 403


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  250 bits (639), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 151/456 (33%), Positives = 249/456 (54%), Gaps = 33/456 (7%)

Query: 64  GLKIHAHITKTG-VKPNTNISIKLLILHLKCGALKYAGQMFDELPQ--RTLSAYNYMIAG 120
           G ++HA + K   +  N+ ++  L+ ++     +  A ++FD +P+  R L  +N MI G
Sbjct: 301 GREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICG 360

Query: 121 YLKNGQVEESLSLVRKL-VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           Y + G  EE+L L  ++   +G  P   T S +L A  C RS     +     +H  ++K
Sbjct: 361 YAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPA--CARSEGFAGKE---AMHGYVVK 415

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
             +  +  +  AL+D Y + G+   AR +F M+  ++V+   ++I+G + QG   +A ++
Sbjct: 416 RGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQL 475

Query: 240 FRK------------TVEK--------DIVVYNAMIEGYSISIETARKALEVHCQLIKNV 279
             +            T E+        + +    ++ G +     AR   E+H   +++ 
Sbjct: 476 VTEMQLPSPSPSSSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARGK-EIHGYAVRHA 534

Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
              D+ +GSALVDMYAKCG +  +R VFD + ++NV TW  +I  YG +G  ++A+ LF 
Sbjct: 535 LESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFD 594

Query: 340 MMQECC-VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398
            M       PN VTF+ AL+AC H+GLVD+G E+F  MERD+ +KP  + +AC+VD+LGR
Sbjct: 595 EMAAGGEATPNEVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGR 654

Query: 399 AGSLEQALKFVLEM-PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457
           AG L++A   +  M P +     W++LL +CRLH +VE+  +AA  +F+L   +    YV
Sbjct: 655 AGRLDEAYSIITSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFELEPGE-ASHYV 713

Query: 458 ALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            L N  +AAG WD    +R +M+ +GV K+ GCSW+
Sbjct: 714 LLCNIYSAAGMWDKSVAVRVRMRRQGVAKEPGCSWI 749



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 113/435 (25%), Positives = 193/435 (44%), Gaps = 67/435 (15%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISI---KLLILHLKCGALKYA 99
            T  S+  A  H    D    G + HA   K G             LL ++ + G +  A
Sbjct: 170 FTLVSVLLACSHLPGDDGRRLGREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDA 229

Query: 100 GQMFDELPQRTLSA-----------YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYT 148
             +F     RT +A           +N MI+  ++ G+  E++ ++  +VS G RPDG T
Sbjct: 230 QSLF-----RTTAAAFSPGGGDVVTWNTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVT 284

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILK-CDVKADDVLYTALVDSYVKGGKTSYARI 207
           F+  L A  C R  +     LGR +HA +LK  D+ A+  + +ALVD Y    K + AR 
Sbjct: 285 FASALPA--CSRLEM---LALGREMHAVVLKDADLAANSFVASALVDMYAGNEKVASARR 339

Query: 208 VFDMMLE--KNVICSTSMISGFMSQGFVEDAEEIFRK-----------TVEKDIVVYNAM 254
           VFDM+ E  + +    +MI G+   G  E+A E+F +           T    ++   A 
Sbjct: 340 VFDMVPEPSRQLGMWNAMICGYAQAGMDEEALELFSRMEAEAGCAPSETTMSGVLPACAR 399

Query: 255 IEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKN 314
            EG++      ++A+  H  ++K     +  + +AL+DMYA+ G++D ARR+F  +  ++
Sbjct: 400 SEGFA-----GKEAM--HGYVVKRGMAGNRFVQNALMDMYARLGEMDVARRIFAMIDPRD 452

Query: 315 VFTWTSMIDGYGKNGNPNQALELFCMMQ------------------ECCVQPNYVTFLGA 356
           V +W ++I G    G+  +A +L   MQ                   C   PN +T +  
Sbjct: 453 VVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPSSSSTTEEGEAHRC--MPNNITLMTL 510

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           L  C       +G+EI     R ++++  +   + +VD+  + G L  +      +P + 
Sbjct: 511 LPGCAALAAPARGKEIHGYAVR-HALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRR- 568

Query: 417 NSDVWAALLSSCRLH 431
           N   W  L+ +  +H
Sbjct: 569 NVITWNVLIMAYGMH 583



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/154 (25%), Positives = 72/154 (46%), Gaps = 5/154 (3%)

Query: 60  TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIA 119
            P  G +IH +  +  ++ +  +   L+ ++ KCG L  +  +FD LP+R +  +N +I 
Sbjct: 519 APARGKEIHGYAVRHALESDIAVGSALVDMYAKCGCLAASRAVFDRLPRRNVITWNVLIM 578

Query: 120 GYLKNGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
            Y  +G  +E+++L  ++ + GE  P+  TF   L A   C  +  + R L  + H    
Sbjct: 579 AYGMHGLGDEAVALFDEMAAGGEATPNEVTFIAALAA---CSHSGLVDRGL-ELFHGMER 634

Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM 212
              VK    L+  +VD   + G+   A  +   M
Sbjct: 635 DHGVKPTPDLHACVVDVLGRAGRLDEAYSIITSM 668


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  250 bits (639), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 166/539 (30%), Positives = 270/539 (50%), Gaps = 70/539 (12%)

Query: 10  SVFSSTHNRHYTLVPPNQTFPPKLQNYDSLS-NPLTATSLPSALQH---YINSDTPFYGL 65
           S+F S H++     PPN      L    SL+  P ++  L S + H   Y NS T F  L
Sbjct: 80  SLFHSIHHQ-----PPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHT-FPSL 133

Query: 66  --------------KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG----------- 100
                         ++HAH  K  +  + ++   L+ ++ + G L++A            
Sbjct: 134 FKSCAKSKATHEAKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDA 193

Query: 101 --------------------QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSS 140
                               ++FDE+P + + ++N MIAGY+++G+ EE+L+   ++  +
Sbjct: 194 VSFTALITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEA 253

Query: 141 GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGG 200
              P+  T   +L A    RS       LG+ + + +       +  L  ALVD Y K G
Sbjct: 254 DVSPNQSTMVSVLSACGHLRS-----LELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCG 308

Query: 201 KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIE 256
           +   AR +FD M +K+VI   +MI G+      E+A    E + R+ V  + V + A++ 
Sbjct: 309 EIGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLP 368

Query: 257 GYSISIETARKALEVHCQLIKNV----FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ 312
             + S+        VH  + KN+       +V L ++++ MYAKCG ++ A +VF  M  
Sbjct: 369 ACA-SLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGS 427

Query: 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           +++ +W +MI G   NG+  +AL LF  M     QP+ +TF+G LSAC  AG V+ G   
Sbjct: 428 RSLASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRY 487

Query: 373 FESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHD 432
           F SM +DY + PK++HY CM+DLL R+G  ++A   +  M  +P+  +W +LL++CR+H 
Sbjct: 488 FSSMNKDYGISPKLQHYGCMIDLLARSGKFDEAKVLMGNMEMEPDGAIWGSLLNACRIHG 547

Query: 433 DVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
            VE     A  +F+L   +  GAYV LSN  A AG+WD V ++R K+  +G+ K  GC+
Sbjct: 548 QVEFGEYVAERLFELEP-ENSGAYVLLSNIYAGAGRWDDVAKIRTKLNDKGMKKVPGCT 605



 Score =  147 bits (371), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 111/414 (26%), Positives = 202/414 (48%), Gaps = 49/414 (11%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGA---LKYAGQMFDELPQR--TLSAYNYMIAG 120
           +IH+ I K+G+  NT  +   LI          L YA  +F  +  +   +  +N +I  
Sbjct: 43  QIHSLIIKSGLH-NTLFAQSKLIEFCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRA 101

Query: 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
           +        SL L  +++ SG  P+ +TF  + K  +C +S      +  + +HA  LK 
Sbjct: 102 HSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFK--SCAKSKA---THEAKQLHAHALKL 156

Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
            +     ++T+L+  Y + G+  +AR+VFD    ++ +  T++I+G++S+G V+DA  +F
Sbjct: 157 ALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLF 216

Query: 241 RKTVEKDIVVYNAMIEGY--------SISIETARKALEVH------------CQLIKNV- 279
            +   KD+V +NAMI GY        +++  T  +  +V             C  ++++ 
Sbjct: 217 DEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLE 276

Query: 280 -------------FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
                        F ++++L +ALVDMY+KCG+I  AR++FD M+ K+V  W +MI GY 
Sbjct: 277 LGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYC 336

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM 386
                 +AL LF +M    V PN VTFL  L AC   G +D G+ +   ++++      +
Sbjct: 337 HLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKNLKGTGNV 396

Query: 387 EH---YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
            +   +  ++ +  + G +E A +    M  +  +  W A++S   ++   E A
Sbjct: 397 NNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLAS-WNAMISGLAMNGHAERA 449


>gi|125584568|gb|EAZ25232.1| hypothetical protein OsJ_09035 [Oryza sativa Japonica Group]
          Length = 674

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 136/382 (35%), Positives = 231/382 (60%), Gaps = 18/382 (4%)

Query: 120 GYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           GY++N  V  SL L R +++S         + ++  S   R  VP  R +   +HA I K
Sbjct: 170 GYVRNNLVYHSLELFRAMIASDSASVVDEAAALVAFSASAR--VP-DRGVTASLHALIAK 226

Query: 180 CDVKADDVLYTALVDSYVKGGKT--SYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
              + +  +   ++DSY KGG      AR VFD M E++V+   SMI+ +   G   +A 
Sbjct: 227 IGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQNGMSAEAI 285

Query: 238 EIFRKT------VEKDIVVYNAMIEG--YSISIETARKALEVHCQLIKNVFFEDVKLGSA 289
            ++ K       ++ + V  +A++    ++ +I+T ++   +H Q+++    E+V +G++
Sbjct: 286 GLYSKMLNVGGGIKCNAVALSAVLLACAHAGAIQTGKR---IHNQVVRMGLEENVYVGTS 342

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349
           +VDMY+KCG+++ A R F  +++KN+ +W++MI GYG +G   +ALE+F  M+   ++PN
Sbjct: 343 IVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIFTEMKRSGLRPN 402

Query: 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFV 409
           Y+TF+  L+AC HAGL+D+GR  + +M++++ ++  +EHY CMVDLLGRAG L++A   +
Sbjct: 403 YITFISVLAACSHAGLLDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEAYSLI 462

Query: 410 LEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKW 469
            EM  KP++ +W ALLS+CR+H +VE+A ++   +F+L+A++  G YV LSN  A A  W
Sbjct: 463 KEMKVKPDAAIWGALLSACRIHKNVELAEMSVKRLFELDASNS-GYYVLLSNIYAEARMW 521

Query: 470 DSVTELREKMKLRGVLKDTGCS 491
             V  +R  +K R + K  G S
Sbjct: 522 KDVERIRLLVKTRRIEKPPGYS 543



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 139/306 (45%), Gaps = 56/306 (18%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGA--LKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           +HA I K G + N  +   +L  + K G+  L+ A ++FD + +R + ++N MIA Y +N
Sbjct: 220 LHALIAKIGFERNAGVVNTMLDSYAKGGSRDLEVARKVFDTM-ERDVVSWNSMIALYAQN 278

Query: 125 GQVEESLSLVRKL--VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
           G   E++ L  K+  V  G + +    S +L A  C  +        G+ +H Q+++  +
Sbjct: 279 GMSAEAIGLYSKMLNVGGGIKCNAVALSAVLLA--CAHAGAI---QTGKRIHNQVVRMGL 333

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           + +  + T++VD Y K G+   A   F  + EKN++  ++MI+G+   G  ++A EIF  
Sbjct: 334 EENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGMHGRGQEALEIF-- 391

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC---GK 299
                               E  R  L        N            + + A C   G 
Sbjct: 392 -------------------TEMKRSGLR------PNYI--------TFISVLAACSHAGL 418

Query: 300 IDDARRVFDHMQQK-----NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           +D+ R  ++ M+Q+      V  +  M+D  G+ G  ++A   + +++E  V+P+   + 
Sbjct: 419 LDEGRYWYNAMKQEFGIEAGVEHYGCMVDLLGRAGCLDEA---YSLIKEMKVKPDAAIWG 475

Query: 355 GALSAC 360
             LSAC
Sbjct: 476 ALLSAC 481



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 25/92 (27%), Positives = 55/92 (59%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH  + + G++ N  +   ++ ++ KCG ++ A + F ++ ++ + +++ MI GY  
Sbjct: 321 GKRIHNQVVRMGLEENVYVGTSIVDMYSKCGRVEMASRAFRKIKEKNILSWSAMITGYGM 380

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
           +G+ +E+L +  ++  SG RP+  TF  +L A
Sbjct: 381 HGRGQEALEIFTEMKRSGLRPNYITFISVLAA 412


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 157/478 (32%), Positives = 259/478 (54%), Gaps = 17/478 (3%)

Query: 22  LVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTN 81
           L+  + TF  ++ +   L + +T +SL  ++  + N +   Y  +IH +I +  +  +  
Sbjct: 320 LMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLE---YCKQIHCYIMRHSISLDIF 376

Query: 82  ISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG 141
           ++  L+  + KC  +  A  +F +     +  +  MI+GYL NG   +SL + R LV   
Sbjct: 377 LTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVK 436

Query: 142 ERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK 201
             P+  T   IL         + L   LGR +H  I+K        +  A++D Y K G+
Sbjct: 437 ISPNEITLVSILPVI-----GILLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGR 491

Query: 202 TSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEG 257
            + A  +F+ + +++++   SMI+          A +IFR+     +  D V  +A +  
Sbjct: 492 MNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISAALSA 551

Query: 258 YS-ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF 316
            + +  E+  KA  +H  +IK+    DV   S L+DMYAKCG +  A  VF  M++KN+ 
Sbjct: 552 CANLPSESFGKA--IHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIV 609

Query: 317 TWTSMIDGYGKNGNPNQALELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES 375
           +W S+I   G +G    +L LF  M+++  ++P+ +TFL  +S+C H G VD+G   F S
Sbjct: 610 SWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRS 669

Query: 376 MERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVE 435
           M  DY ++P+ EHYAC+VDL GRAG L +A + V  MP  P++ VW  LL +CRLH +VE
Sbjct: 670 MTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVE 729

Query: 436 MANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           +A +A++++  L+ ++  G YV +SN  A A +W+SVT++R  MK R V K  G SW+
Sbjct: 730 LAEVASSKLMDLDPSN-SGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWI 786



 Score =  168 bits (426), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 108/376 (28%), Positives = 200/376 (53%), Gaps = 20/376 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G+++H  +  +GV    +I   LL ++ KCG    A ++F  + +     +N MI+GY++
Sbjct: 258 GVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQ 317

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLG--RMVHAQILKCD 181
           +G +EESL+   +++SSG  PD  TFS +L +       V    NL   + +H  I++  
Sbjct: 318 SGLMEESLTFFYEMISSGVLPDAITFSSLLPS-------VSKFENLEYCKQIHCYIMRHS 370

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           +  D  L +AL+D+Y K    S A+ +F      +V+  T+MISG++  G   D+ E+FR
Sbjct: 371 ISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFR 430

Query: 242 KTVEKDI------VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
             V+  I      +V    + G  ++++  R   E+H  +IK  F     +G A++DMYA
Sbjct: 431 WLVKVKISPNEITLVSILPVIGILLALKLGR---ELHGFIIKKGFDNRCNIGCAVIDMYA 487

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           KCG+++ A  +F+ + ++++ +W SMI    ++ NP+ A+++F  M    +  + V+   
Sbjct: 488 KCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSISA 547

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
           ALSAC +      G+ I   M + +S+   +   + ++D+  + G+L+ A+     M EK
Sbjct: 548 ALSACANLPSESFGKAIHGFMIK-HSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEK 606

Query: 416 PNSDVWAALLSSCRLH 431
            N   W +++++C  H
Sbjct: 607 -NIVSWNSIIAACGNH 621



 Score =  113 bits (282), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 167/348 (47%), Gaps = 15/348 (4%)

Query: 13  SSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHIT 72
           SS   R    + P +   P L+N            L   LQ   N +    G ++HA + 
Sbjct: 4   SSVAKRFAPAIAPYKKSLP-LRNSSRFLEETIPRRLSLLLQACSNPNLLRQGKQVHAFLI 62

Query: 73  KTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQR--TLSAYNYMIAGYLKNGQVEES 130
              +  ++    ++L ++  CG+    G+MF  L  R  ++  +N +I+ +++NG + ++
Sbjct: 63  VNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQA 122

Query: 131 LSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT 190
           L+   K++  G  PD  TF  ++KA    + N      L   V +  + C    ++ + +
Sbjct: 123 LAFYFKMLCFGVSPDVSTFPCLVKACVALK-NFKGIDFLSDTVSSLGMDC----NEFVAS 177

Query: 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV 250
           +L+ +Y++ GK      +FD +L+K+ +    M++G+   G ++   + F   +  D + 
Sbjct: 178 SLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGF-SVMRMDQIS 236

Query: 251 YNAMIEGYSISIETARKALEVHCQL-----IKNVFFEDVKLGSALVDMYAKCGKIDDARR 305
            NA+     +S+  ++  +++  QL     +  V FE   + ++L+ MY+KCG+ DDA +
Sbjct: 237 PNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEG-SIKNSLLSMYSKCGRFDDASK 295

Query: 306 VFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
           +F  M + +  TW  MI GY ++G   ++L  F  M    V P+ +TF
Sbjct: 296 LFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSGVLPDAITF 343



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 72/327 (22%), Positives = 146/327 (44%), Gaps = 47/327 (14%)

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTS-YARI 207
            S++L+A     SN  L R  G+ VHA ++   +  D      ++  Y   G  S   ++
Sbjct: 38  LSLLLQAC----SNPNLLRQ-GKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKM 92

Query: 208 VFDMMLEKNVICS-TSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISI 262
            + + L ++ I    S+IS F+  G +  A   + K     V  D+  +  +++   +++
Sbjct: 93  FYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKA-CVAL 151

Query: 263 ETARKALEVHCQLIKNVFFE-DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
           +   K ++     + ++  + +  + S+L+  Y + GKID   ++FD + QK+   W  M
Sbjct: 152 KNF-KGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVM 210

Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI--------- 372
           ++GY K G  +  ++ F +M+   + PN VTF   LS C    L+D G ++         
Sbjct: 211 LNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGV 270

Query: 373 -------------------FESMERDYSMKPKME--HYACMVDLLGRAGSLEQALKFVLE 411
                              F+   + + M  + +   + CM+    ++G +E++L F  E
Sbjct: 271 DFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYE 330

Query: 412 MPEK---PNSDVWAALLSSCRLHDDVE 435
           M      P++  +++LL S    +++E
Sbjct: 331 MISSGVLPDAITFSSLLPSVSKFENLE 357


>gi|297792601|ref|XP_002864185.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310020|gb|EFH40444.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 588

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 146/435 (33%), Positives = 257/435 (59%), Gaps = 14/435 (3%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           GL++H +I K+G+     ++  L+  + K      + + F++ PQ++ + ++ +I+ + +
Sbjct: 34  GLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSATTWSSIISCFAQ 93

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR-NLGRMVHAQILKCDV 182
           N     SL  +RK+++   RPD +    +L ++T  +S   L R ++G+ VH   +K   
Sbjct: 94  NELPWMSLEFLRKMMAGSLRPDDH----VLPSAT--KSCGILSRCDIGKSVHCLSMKTGY 147

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
            AD  + ++LVD Y K G+  YAR +FD M  +NV+  + M+ G+   G  E+A  +F++
Sbjct: 148 DADVFVGSSLVDMYAKCGEIVYARKMFDEMPLRNVVTWSGMMYGYAQMGENEEALWLFKE 207

Query: 243 TVEKDIVVYNAMIEGYSISIETARKALEVHCQL----IKNVFFEDVKLGSALVDMYAKCG 298
            + +++ V N       IS+      LE+  Q+    IK+ F     +GS+LV +Y+KCG
Sbjct: 208 ALFENLAV-NDYSFSTVISVCANSTLLELGRQIQGLCIKSSFDSSSFVGSSLVSLYSKCG 266

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            ++ A +VFD +  +N+  W +M+    ++ +  + +ELF  M+   ++PN++TFL  L+
Sbjct: 267 DLEGAYQVFDEVPMRNLGIWNAMLKACAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLN 326

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC HAGLVD+G+  F+ M ++  ++P  +HYA +VD+LGRAG LE+AL+ V  MP  P  
Sbjct: 327 ACSHAGLVDEGKYYFDLM-KESRIEPTDKHYASLVDMLGRAGKLEEALEIVTNMPIDPTE 385

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            VW ALL+SC +H + E+A  AA+++F+L      G +++LSN  AA G+++   + R+ 
Sbjct: 386 SVWGALLTSCTIHKNTELAAFAADKVFELGPVS-SGMHISLSNAYAADGRFEDAAKARKL 444

Query: 479 MKLRGVLKDTGCSWV 493
           ++ RG  K+TG SWV
Sbjct: 445 LRDRGEKKETGLSWV 459



 Score = 57.4 bits (137), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 6/159 (3%)

Query: 57  NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNY 116
           NS     G +I     K+    ++ +   L+ L+ KCG L+ A Q+FDE+P R L  +N 
Sbjct: 229 NSTLLELGRQIQGLCIKSSFDSSSFVGSSLVSLYSKCGDLEGAYQVFDEVPMRNLGIWNA 288

Query: 117 MIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
           M+    ++   ++ + L +++  SG +P+  TF  +L A  C  + +    + G+     
Sbjct: 289 MLKACAQHSHTQKVIELFKRMKLSGMKPNFITFLNVLNA--CSHAGLV---DEGKYYFDL 343

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYA-RIVFDMMLE 214
           + +  ++  D  Y +LVD   + GK   A  IV +M ++
Sbjct: 344 MKESRIEPTDKHYASLVDMLGRAGKLEEALEIVTNMPID 382



 Score = 56.6 bits (135), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 4/160 (2%)

Query: 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
           K L++H  ++K+       + + L++ Y+K     D+RR F+   QK+  TW+S+I  + 
Sbjct: 33  KGLQLHGYIVKSGLSLIPLVANNLINFYSKSQLPFDSRRAFEDSPQKSATTWSSIISCFA 92

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF-ESMERDYSMKPK 385
           +N  P  +LE    M    ++P+      A  +CG     D G+ +   SM+  Y     
Sbjct: 93  QNELPWMSLEFLRKMMAGSLRPDDHVLPSATKSCGILSRCDIGKSVHCLSMKTGYDADVF 152

Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
           +   + +VD+  + G +  A K   EMP + N   W+ ++
Sbjct: 153 VG--SSLVDMYAKCGEIVYARKMFDEMPLR-NVVTWSGMM 189


>gi|356553819|ref|XP_003545249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g34400-like [Glycine max]
          Length = 608

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 147/439 (33%), Positives = 240/439 (54%), Gaps = 14/439 (3%)

Query: 68  HAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV 127
           H+ + K  +  + + +  L+ ++ +CG + +A ++FDE+P+R L ++N MIAGY K G  
Sbjct: 139 HSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGCA 198

Query: 128 EESLSLVRKL-VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
            E++ +  ++    G  PD  +   +L A   C     L   LGR V   +++  +  + 
Sbjct: 199 REAVEVFGEMGRRDGFEPDEMSLVSVLGA---CGELGDL--ELGRWVEGFVVERGMTLNS 253

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
            + +AL+  Y K G    AR +FD M  ++VI   ++ISG+   G  ++A  +F   +++
Sbjct: 254 YIGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFH-AMKE 312

Query: 247 DIVVYNAMIEGYSISIETARKALEVHCQL----IKNVFFEDVKLGSALVDMYAKCGKIDD 302
           D V  N +     +S      AL++  Q+     +  F  D+ + +AL+DMYAKCG +  
Sbjct: 313 DCVTENKITLTAVLSACATIGALDLGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLAS 372

Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF-CMMQECC-VQPNYVTFLGALSAC 360
           A+RVF  M QKN  +W +MI     +G   +AL LF CM  E    +PN +TF+G LSAC
Sbjct: 373 AQRVFKEMPQKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSAC 432

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
            HAGLV++G  +F+ M   + + PK+EHY+CMVDLL RAG L +A   + +MPEKP+   
Sbjct: 433 VHAGLVNEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPEKPDKVT 492

Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
             ALL +CR   +V++       I +++ ++  G Y+  S   A    W+    +R  M+
Sbjct: 493 LGALLGACRSKKNVDIGERVIRMILEVDPSN-SGNYIISSKIYANLNMWEDSARMRLLMR 551

Query: 481 LRGVLKDTGCSWVGTESGL 499
            +G+ K  GCSW+  E+ L
Sbjct: 552 QKGITKTPGCSWIEVENHL 570



 Score =  142 bits (357), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 93/338 (27%), Positives = 157/338 (46%), Gaps = 55/338 (16%)

Query: 144 PDGYTFSMILKASTCCRSNVPLPRNL-------------------------------GRM 172
           P+ Y F+++++A T    + PL   L                                R 
Sbjct: 78  PNDYAFNIMIRALTTTWHHYPLALTLFHRMMSLSLSPNNFTFPFFFLSCANLAVLSPARA 137

Query: 173 VHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGF 232
            H+ + K  + +D     +L+  Y + G+ ++AR VFD +  ++++   SMI+G+   G 
Sbjct: 138 AHSLVFKLALHSDPHTTHSLITMYSRCGRVAFARKVFDEIPRRDLVSWNSMIAGYAKAGC 197

Query: 233 VEDAEEIFRKTVEKD---------IVVYNAMIEGYSISIETARKALEVHCQLIKNVFFED 283
             +A E+F +   +D         + V  A  E   + +    +   V   +  N +   
Sbjct: 198 AREAVEVFGEMGRRDGFEPDEMSLVSVLGACGELGDLELGRWVEGFVVERGMTLNSY--- 254

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
             +GSAL+ MYAKCG +  ARR+FD M  ++V TW ++I GY +NG  ++A+ LF  M+E
Sbjct: 255 --IGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQNGMADEAISLFHAMKE 312

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH----YACMVDLLGRA 399
            CV  N +T    LSAC   G +D G++I E     Y+ +   +H       ++D+  + 
Sbjct: 313 DCVTENKITLTAVLSACATIGALDLGKQIDE-----YASQRGFQHDIFVATALIDMYAKC 367

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
           GSL  A +   EMP+K N   W A++S+   H   + A
Sbjct: 368 GSLASAQRVFKEMPQK-NEASWNAMISALASHGKAKEA 404



 Score = 81.3 bits (199), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 81/315 (25%), Positives = 138/315 (43%), Gaps = 43/315 (13%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +   + + G+  N+ I   L+ ++ KCG L  A ++FD +  R +  +N +I+GY +
Sbjct: 237 GRWVEGFVVERGMTLNSYIGSALISMYAKCGDLGSARRIFDGMAARDVITWNAVISGYAQ 296

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG  +E++SL   +       +  T + +L A   C +   L  +LG+ +     +   +
Sbjct: 297 NGMADEAISLFHAMKEDCVTENKITLTAVLSA---CATIGAL--DLGKQIDEYASQRGFQ 351

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  + TAL+D Y K G  + A+ VF  M +KN     +MIS   S G  ++A  +F+  
Sbjct: 352 HDIFVATALIDMYAKCGSLASAQRVFKEMPQKNEASWNAMISALASHGKAKEALSLFQCM 411

Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
            +          EG       AR           ++ F  V L SA V      G +++ 
Sbjct: 412 SD----------EGGG-----ARP---------NDITF--VGLLSACV----HAGLVNEG 441

Query: 304 RRVFDHMQQ-----KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            R+FD M         +  ++ M+D   + G+  +A +L   M E   +P+ VT    L 
Sbjct: 442 YRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAWDLIEKMPE---KPDKVTLGALLG 498

Query: 359 ACGHAGLVDKGREIF 373
           AC     VD G  + 
Sbjct: 499 ACRSKKNVDIGERVI 513



 Score = 58.9 bits (141), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 102/222 (45%), Gaps = 34/222 (15%)

Query: 41  NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
           N +T T++ SA       D    G +I  + ++ G + +  ++  L+ ++ KCG+L  A 
Sbjct: 318 NKITLTAVLSACATIGALD---LGKQIDEYASQRGFQHDIFVATALIDMYAKCGSLASAQ 374

Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLV--SSGERPDGYTFSMILKASTC 158
           ++F E+PQ+  +++N MI+    +G+ +E+LSL + +     G RP+  TF  +L A   
Sbjct: 375 RVFKEMPQKNEASWNAMISALASHGKAKEALSLFQCMSDEGGGARPNDITFVGLLSAC-- 432

Query: 159 CRSNVPLPRNLGRMVHAQILKCDVKADDVL------------YTALVDSYVKGGKTSYAR 206
                         VHA ++    +  D++            Y+ +VD   + G    A 
Sbjct: 433 --------------VHAGLVNEGYRLFDMMSTLFGLVPKIEHYSCMVDLLARAGHLYEAW 478

Query: 207 IVFDMMLEK-NVICSTSMISGFMSQGFVEDAEEIFRKTVEKD 247
            + + M EK + +   +++    S+  V+  E + R  +E D
Sbjct: 479 DLIEKMPEKPDKVTLGALLGACRSKKNVDIGERVIRMILEVD 520


>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 793

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 147/480 (30%), Positives = 271/480 (56%), Gaps = 28/480 (5%)

Query: 27  QTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKL 86
           Q F   +++ D+  + +T  S  SA  H    +      ++HA + K        +   L
Sbjct: 275 QLFFQAVESEDAAIDEVTLLSAISAASHLQKFEL---AEQLHAFVIKNVAVTQVCVMNAL 331

Query: 87  LILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDG 146
           + ++ +C ++  + ++FD +P++ + ++N MI+ +++NG  +E+L L  ++       D 
Sbjct: 332 IAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDS 391

Query: 147 YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR 206
            T + +L A++  R+      ++G+  H  +L+  ++ +  + + L+D Y K G    A+
Sbjct: 392 VTVTALLSAASDLRN-----PDIGKQTHGYLLRNGIQFEG-MDSYLIDMYAKSGLIEAAQ 445

Query: 207 IVFDMML--EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI---VVYNAMI------ 255
            VF+     E++     SM+SG+   G V+ A  I R+ +++ +   VV  A I      
Sbjct: 446 NVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNP 505

Query: 256 EGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
            GY   I+  +   ++H   I+N   ++V + +AL+DMY+K G I  A  VF    +K++
Sbjct: 506 SGY---IDWGK---QLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSI 559

Query: 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES 375
            T+++MI GYG++G    AL +F  MQ+  +QP+ VT +  LSAC +AGLVD+G +IFES
Sbjct: 560 VTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFES 619

Query: 376 MERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS-DVWAALLSSCRLHDDV 434
           M   Y+++P  EH+ C+ D+LGRAG +++A +FV+ + EK N  ++W +LL++CR+H   
Sbjct: 620 MRTVYNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQF 679

Query: 435 EMANIAANEIFKLNA-NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           E+  + A ++ ++   N + G +V LSN  A    W++V  +R++M+ RG+ K+TG SW+
Sbjct: 680 ELGKLVAKKLLEMEKINGKTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKKETGSSWI 739



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 186/383 (48%), Gaps = 27/383 (7%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM-------------FDELPQRT 110
           G  +HAH  +  + P+  +   LL ++  C +    G+M             FD + +RT
Sbjct: 91  GKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKVFDTMRKRT 150

Query: 111 LSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLG 170
           + A+N +IA Y++  +  E++     ++  G +P   +F  +  A     S++   +N  
Sbjct: 151 VVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAF----SSLGDFKN-A 205

Query: 171 RMVHAQILKCDVKADDVLY--TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM 228
            +VH  ++K   +  + LY  ++ +  Y + G   +A+ VFD  LE+N     +MIS F+
Sbjct: 206 NVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMISAFV 265

Query: 229 SQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFEDV 284
              F  +  ++F + VE +    + +    +IS  +  +  E    +H  +IKNV    V
Sbjct: 266 QNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVAVTQV 325

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
            + +AL+ MY++C  ID + ++FD+M +K+V +W +MI  + +NG  ++AL LF  M++ 
Sbjct: 326 CVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQ 385

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQ 404
            +  + VT    LSA       D G++    + R+      M+ Y  ++D+  ++G +E 
Sbjct: 386 DLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMDSY--LIDMYAKSGLIEA 443

Query: 405 ALK-FVLEMPEKPNSDVWAALLS 426
           A   F      + +   W +++S
Sbjct: 444 AQNVFEKSFSHERDQATWNSMMS 466



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 97/376 (25%), Positives = 179/376 (47%), Gaps = 41/376 (10%)

Query: 81  NISIKLLILHLKC-----GALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVR 135
           +ISI L+  H  C     G L  A Q+FD LP+ +   +N +I G + N   +E+L    
Sbjct: 2   HISINLV--HELCRLCQEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYS 59

Query: 136 KLVSSGE--RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALV 193
            + SS    + D YT+S +LKA    R+ V     +G+ VHA  L+C +    ++Y +L+
Sbjct: 60  NMKSSSPQVKCDSYTYSSVLKACADTRNLV-----VGKAVHAHFLRCLMNPSRIVYNSLL 114

Query: 194 DSY------------VKG-GKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
           + Y            V G  +    R VFD M ++ V+   ++I+ ++      +A + F
Sbjct: 115 NMYSMCSSTTPDGKMVSGYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQF 174

Query: 241 RKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIK--NVFFEDVKLGSALVDMY 294
              ++  I    V +  +   +S S+   + A  VH  L+K  + +  D+ + S+ + MY
Sbjct: 175 SMMMKIGIKPSPVSFVNVFPAFS-SLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMY 233

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC-CVQPNYVTF 353
           A+ G ++ A++VFD+  ++N   W +MI  + +N    + ++LF    E      + VT 
Sbjct: 234 AELGCLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDEVTL 293

Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           L A+SA  H    +   ++   + ++ ++       A ++ +  R  S++ + K    MP
Sbjct: 294 LSAISAASHLQKFELAEQLHAFVIKNVAVTQVCVMNA-LIAMYSRCNSIDTSFKIFDNMP 352

Query: 414 EKPNSDV--WAALLSS 427
           EK   DV  W  ++S+
Sbjct: 353 EK---DVVSWNTMISA 365


>gi|125547017|gb|EAY92839.1| hypothetical protein OsI_14639 [Oryza sativa Indica Group]
          Length = 702

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 155/449 (34%), Positives = 249/449 (55%), Gaps = 20/449 (4%)

Query: 64  GLKIHAHITKTG-VKPNTNISIKLLILHLKCGALKYAGQMFDELPQ--RTLSAYNYMIAG 120
           G ++HA++ K   +  N+ ++  L+ ++     +  A Q+FD +P   + L  +N MI G
Sbjct: 138 GREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICG 197

Query: 121 YLKNGQVEESLSLVRKL-VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
           Y + G  EE+L L  ++   +G  P   T + +L A  C RS     +     VH  ++K
Sbjct: 198 YAQAGMDEEALRLFARMEAEAGFVPCETTMASVLPA--CARSEAFAGKE---AVHGYVVK 252

Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
             +  +  +  AL+D Y + GKT  AR +F M+   +V+   ++I+G + QG V DA ++
Sbjct: 253 RGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQL 312

Query: 240 FR--KTVEKDIVVYNA-----MIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVD 292
            R  + +E+  VV NA     ++ G +I    AR   E+H   +++    DV +GSALVD
Sbjct: 313 AREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGK-EIHGYAVRHALDTDVAVGSALVD 371

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNYV 351
           MYAKCG +  +R VFD + ++N  TW  +I  YG +G   +A  LF  M      +PN V
Sbjct: 372 MYAKCGCLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEV 431

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
           TF+ AL+AC H+G+VD+G ++F +MERD+ ++P  +  AC+VD+LGRAG L++A   V  
Sbjct: 432 TFMAALAACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTS 491

Query: 412 MPE-KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470
           M   +     W+ +L +CRLH +V +  IA   + +L        YV L N  +AAG+W 
Sbjct: 492 MEAGEQQVSAWSTMLGACRLHRNVHLGEIAGERLLELEPE-EASHYVLLCNIYSAAGQWT 550

Query: 471 SVTELREKMKLRGVLKDTGCSWVGTESGL 499
              E+R +M+ RGV K+ GCSW+  +  +
Sbjct: 551 RAAEVRSRMRRRGVAKEPGCSWIEVDGAI 579



 Score =  115 bits (287), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 111/412 (26%), Positives = 195/412 (47%), Gaps = 29/412 (7%)

Query: 40  SNPLTATSLPSALQHYIN----SDTPFYGLKIHAHITKTGV-KPNTNISIK-LLILHLKC 93
            +PLT+ +L S L+   +    +     G + HA   K G+   +   +   LL ++ + 
Sbjct: 5   GHPLTSFTLVSVLRAVSHLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARL 64

Query: 94  GALKYAGQMF-DELPQR-TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           G +  A ++F    P R  +  +N M++  +++G  +E++  +  +V+ G RPDG TF+ 
Sbjct: 65  GLVADAQRLFAGATPGRGDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFAS 124

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCD-VKADDVLYTALVDSYVKGGKTSYARIVFD 210
            L A  C R  +    ++GR +HA ++K D + A+  + +ALVD Y    +   AR VFD
Sbjct: 125 ALPA--CSRLEL---LDVGREMHAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFD 179

Query: 211 MMLE--KNVICSTSMISGFMSQGFVEDAEEIF-RKTVEKDIVVYNAMIEGYSISIETARK 267
           M+ +  K +    +MI G+   G  E+A  +F R   E   V     +   S+    AR 
Sbjct: 180 MVPDSGKQLGMWNAMICGYAQAGMDEEALRLFARMEAEAGFVPCETTMA--SVLPACARS 237

Query: 268 AL-----EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
                   VH  ++K     +  + +AL+DMYA+ GK D ARR+F  +   +V +W ++I
Sbjct: 238 EAFAGKEAVHGYVVKRGMAGNRFVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLI 297

Query: 323 DGYGKNGNPNQALELFCMMQ---ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD 379
            G    G+   A +L   MQ   E  V PN +T +  L  C       +G+EI     R 
Sbjct: 298 TGCVVQGHVADAFQLAREMQQLEEGGVVPNAITLMTLLPGCAILAAPARGKEIHGYAVR- 356

Query: 380 YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           +++   +   + +VD+  + G L  +      +P + N+  W  L+ +  +H
Sbjct: 357 HALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRR-NTITWNVLIMAYGMH 407



 Score = 57.0 bits (136), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 7/169 (4%)

Query: 60  TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIA 119
            P  G +IH +  +  +  +  +   L+ ++ KCG L  +  +FD LP+R    +N +I 
Sbjct: 343 APARGKEIHGYAVRHALDTDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNTITWNVLIM 402

Query: 120 GYLKNGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
            Y  +G   E+  L  ++ +SGE RP+  TF   L A   C  +  + R L ++ HA   
Sbjct: 403 AYGMHGLGGEATVLFDRMTASGEARPNEVTFMAALAA---CSHSGMVDRGL-QLFHAMER 458

Query: 179 KCDVKADDVLYTALVDSYVKGGK--TSYARIVFDMMLEKNVICSTSMIS 225
              V+    +   +VD   + G+   +YA +      E+ V   ++M+ 
Sbjct: 459 DHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQQVSAWSTMLG 507


>gi|302808794|ref|XP_002986091.1| hypothetical protein SELMODRAFT_182148 [Selaginella moellendorffii]
 gi|300146239|gb|EFJ12910.1| hypothetical protein SELMODRAFT_182148 [Selaginella moellendorffii]
          Length = 604

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 131/432 (30%), Positives = 242/432 (56%), Gaps = 11/432 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA I  TG +    ++  +LI++ KCG ++   + F  + +R + ++N +I+ Y +
Sbjct: 52  GRRLHARIVATGHQDVMFLANHILIMYGKCGGMEDLSRAFSGMKRRNIVSWNAVISAYAQ 111

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N +  +++ +  +++  G +P   TF+ +L A        P      ++VH   L+    
Sbjct: 112 NDRSSDAIVIFLRMLLDGIQPSYVTFTSVLNAFAG-----PELHRWAKLVHDLALEVGFG 166

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +  V+ TAL++ Y K G    AR VFD +  K+V+  ++MI+ +   G   +A E+F + 
Sbjct: 167 SHPVVATALLNMYSKVGSIDRARQVFDELAIKDVVSWSNMIAAYAQTGHGTEALEMFHRM 226

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               ++ +++ +  ++    + +     A  +HC++I+     +  LG+AL++MY KCG 
Sbjct: 227 DAEGIQANVITFVTVVHA-CVLVARITDARTIHCRIIEAGLESNTVLGTALLNMYGKCGG 285

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           + +A+++FD + +++V  W+++++ Y ++G+P  AL+LF +MQ+  V+PN VTF+G L A
Sbjct: 286 LAEAKKIFDKLAERDVVVWSAILEAYARHGHPRVALKLFTLMQQEGVRPNDVTFVGVLEA 345

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H G V +GR  F S+ RD+ ++P   H  CM+D+LGRAG LE+A  F+  MP K  + 
Sbjct: 346 CCHGGFVPEGRFHFASLVRDHELRPTAHHVHCMLDMLGRAGKLEEAESFIARMPVKEEAI 405

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
            W+  L SCR + D+E    AA ++F+   + R G Y+ L++    AG  +    +   M
Sbjct: 406 TWSIFLGSCRSYGDLERGKRAAEKVFEFLPHCRAG-YLTLASMYTDAGMPEEAEAVARLM 464

Query: 480 KLRGVLKDTGCS 491
           + R   K+ G S
Sbjct: 465 ESRCPKKEPGSS 476



 Score = 78.2 bits (191), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 161/378 (42%), Gaps = 54/378 (14%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
            +  S L  +   +   +   +H    + G   +  ++  LL ++ K G++  A Q+FDE
Sbjct: 135 VTFTSVLNAFAGPELHRWAKLVHDLALEVGFGSHPVVATALLNMYSKVGSIDRARQVFDE 194

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           L  + + +++ MIA Y + G   E+L +  ++ + G + +  TF  ++ A          
Sbjct: 195 LAIKDVVSWSNMIAAYAQTGHGTEALEMFHRMDAEGIQANVITFVTVVHACVLVARITD- 253

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
                R +H +I++  ++++ VL TAL++ Y K G  + A+ +FD + E++V+  ++++ 
Sbjct: 254 ----ARTIHCRIIEAGLESNTVLGTALLNMYGKCGGLAEAKKIFDKLAERDVVVWSAILE 309

Query: 226 GFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEG------------YSISI----ETA 265
            +   G    A ++F    ++ V  + V +  ++E             +  S+    E  
Sbjct: 310 AYARHGHPRVALKLFTLMQQEGVRPNDVTFVGVLEACCHGGFVPEGRFHFASLVRDHELR 369

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMID- 323
             A  VHC L                DM  + GK+++A      M  K    TW+  +  
Sbjct: 370 PTAHHVHCML----------------DMLGRAGKLEEAESFIARMPVKEEAITWSIFLGS 413

Query: 324 --GYGKNGNPNQALE-LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
              YG      +A E +F  +  C  +  Y+T     +    AG+ ++   +   ME   
Sbjct: 414 CRSYGDLERGKRAAEKVFEFLPHC--RAGYLTLASMYT---DAGMPEEAEAVARLME--- 465

Query: 381 SMKPKMEHYACMVDLLGR 398
           S  PK E  +  + + GR
Sbjct: 466 SRCPKKEPGSSKIVVRGR 483


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 139/447 (31%), Positives = 239/447 (53%), Gaps = 11/447 (2%)

Query: 51  ALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRT 110
           AL+   +S    YG +IHA   K G   ++ ++  L  ++ KCG L+Y   +F+++  R 
Sbjct: 223 ALKACADSGALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRD 282

Query: 111 LSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR-NL 169
           + ++  +I   ++ GQ E ++    ++  S   P+ YTF+ ++  S C      L R   
Sbjct: 283 VVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVI--SGCAN----LARIEW 336

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           G  +HA IL   + A   +  +++  Y K G+ + + ++F  M  ++++  +++I+G+  
Sbjct: 337 GEQLHALILHLGLAASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQ 396

Query: 230 QGFVEDAEEIF---RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
            G V +A E+    R    K      A +     ++       ++H  ++         +
Sbjct: 397 GGHVSEAFELLSWMRMEGPKPTEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMV 456

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
            SAL++MY KCG I++A R+FD  +  ++ +WT+MI+GY ++G   + ++LF  +    +
Sbjct: 457 LSALINMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGL 516

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
           +P+ VTF+G LSAC HAGLVD G   F +M + Y + P  EHY CM+DLL RAG L  A 
Sbjct: 517 RPDSVTFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAE 576

Query: 407 KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
             +  MP   +  VW+ LL +CR+H DVE     A  I +L  N   G ++ L+N  A+ 
Sbjct: 577 HMIEAMPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNC-AGTHITLANIYASK 635

Query: 467 GKWDSVTELREKMKLRGVLKDTGCSWV 493
           GKW    ++R+ MK +GV+K+ G SW+
Sbjct: 636 GKWREAADIRKLMKSKGVIKEPGWSWI 662



 Score =  146 bits (368), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/388 (26%), Positives = 194/388 (50%), Gaps = 29/388 (7%)

Query: 56  INSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYN 115
           +NSD   YG  +H +  KTG+  +  +   LL ++ K G +    ++F E+P R + ++ 
Sbjct: 128 LNSDVN-YGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVFHEMPMRNVVSWT 186

Query: 116 YMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA 175
            +I G ++ G  +E+L    ++  S    D YTF++ LKA   C  +  L  N GR +HA
Sbjct: 187 AIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKA---CADSGAL--NYGREIHA 241

Query: 176 QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
           Q +K        +   L   Y K GK  Y   +F+ M  ++V+  T++I+  +  G  E 
Sbjct: 242 QAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLVQMGQEEC 301

Query: 236 AEEIFRKTVEKDI----VVYNAMIEGYS--ISIETARK--ALEVHCQLIKNVFFEDVKLG 287
           A + F +  E D+      + A+I G +    IE   +  AL +H  L  ++  E+    
Sbjct: 302 AVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALILHLGLAASLSVEN---- 357

Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347
            +++ MYAKCG++  +  +F  M ++++ +W+++I GY + G+ ++A EL   M+    +
Sbjct: 358 -SIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEAFELLSWMRMEGPK 416

Query: 348 PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA----CMVDLLGRAGSLE 403
           P        LSACG+  +++ G+++       Y +   +EH A     ++++  + GS+E
Sbjct: 417 PTEFALASVLSACGNMAILEHGKQL-----HAYVLSIGLEHTAMVLSALINMYCKCGSIE 471

Query: 404 QALKFVLEMPEKPNSDVWAALLSSCRLH 431
           +A + + +  E  +   W A+++    H
Sbjct: 472 EASR-IFDAAENDDIVSWTAMINGYAEH 498



 Score =  128 bits (321), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 150/300 (50%), Gaps = 14/300 (4%)

Query: 78  PNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL 137
           P +N  +K L+   K G L  A +MFD++ Q+   ++  +I+GY+      E+L L + +
Sbjct: 50  PESNKQLKELV---KTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKNM 106

Query: 138 -VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196
            V SG R D +  S+  KA   C  N  +  N G ++H   +K  +     + +AL+D Y
Sbjct: 107 RVESGLRIDPFILSLAHKA---CGLNSDV--NYGELLHGYAVKTGLVNSVFVGSALLDMY 161

Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEIFRKTVEKDIVVYN 252
            K GK    R VF  M  +NV+  T++I+G +  G+ ++A     E++R  VE D   + 
Sbjct: 162 TKNGKIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFA 221

Query: 253 AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ 312
             ++  + S        E+H Q +K  F     + + L  MY KCGK++    +F+ M  
Sbjct: 222 IALKACADS-GALNYGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSM 280

Query: 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
           ++V +WT++I    + G    A++ F  M+E  V PN  TF   +S C +   ++ G ++
Sbjct: 281 RDVVSWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQL 340



 Score = 94.4 bits (233), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 78/274 (28%), Positives = 130/274 (47%), Gaps = 47/274 (17%)

Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAM-I 255
           VK G    AR +FD M +K+ I  T++ISG+++     +A  +F     K++ V + + I
Sbjct: 60  VKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLF-----KNMRVESGLRI 114

Query: 256 EGYSISIETARKALE--------VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVF 307
           + + +S+      L         +H   +K      V +GSAL+DMY K GKI + RRVF
Sbjct: 115 DPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNGKIFEGRRVF 174

Query: 308 DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367
             M  +NV +WT++I G  + G   +AL  F  M    V+ +  TF  AL AC  +G ++
Sbjct: 175 HEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALKACADSGALN 234

Query: 368 KGREIF-ESMERDYSMKP--------------KMEH---------------YACMVDLLG 397
            GREI  ++M++ + +                K+E+               +  ++  L 
Sbjct: 235 YGREIHAQAMKKGFDVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVVSWTTIITTLV 294

Query: 398 RAGSLEQALKFVLEMPE---KPNSDVWAALLSSC 428
           + G  E A++  + M E    PN   +AA++S C
Sbjct: 295 QMGQEECAVQAFIRMRESDVSPNEYTFAAVISGC 328



 Score = 63.2 bits (152), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/205 (24%), Positives = 95/205 (46%), Gaps = 11/205 (5%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           T  +L S L    N     +G ++HA++   G++    +   L+ ++ KCG+++ A ++F
Sbjct: 418 TEFALASVLSACGNMAILEHGKQLHAYVLSIGLEHTAMVLSALINMYCKCGSIEEASRIF 477

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           D      + ++  MI GY ++G   E + L  K+   G RPD  TF  +L  S C  + +
Sbjct: 478 DAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSVTFIGVL--SACSHAGL 535

Query: 164 PLPRNLG-RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM-LEKNVICST 221
               +LG R  +A   K  +      Y  ++D   + G+ S A  + + M   ++ +  +
Sbjct: 536 V---DLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEAMPFHRDDVVWS 592

Query: 222 SMISGFMSQGFVEDAEEIFRKTVEK 246
           +++      G VE      R+T E+
Sbjct: 593 TLLRACRVHGDVERG----RRTAER 613


>gi|302800503|ref|XP_002982009.1| hypothetical protein SELMODRAFT_115259 [Selaginella moellendorffii]
 gi|300150451|gb|EFJ17102.1| hypothetical protein SELMODRAFT_115259 [Selaginella moellendorffii]
          Length = 604

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 132/432 (30%), Positives = 243/432 (56%), Gaps = 11/432 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA I  TG +    ++  +LI++ KCG ++   + F E+ +R + ++N +I+ Y +
Sbjct: 52  GRRLHARIVATGHQDVMFLANHILIMYGKCGGMEDLSRAFSEMKRRNIVSWNAVISAYAQ 111

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N +  +++ +  +++  G +P   TF+ +L A        P      ++VH   L+    
Sbjct: 112 NDRSSDAIVIFLRMLLDGIQPSYVTFTSVLNAFAG-----PELHRWAKLVHDLALEVGFG 166

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +  V+ TAL++ Y K G    AR VFD +  K+V+  ++MI+ +   G   +A E+F + 
Sbjct: 167 SHPVVATALLNMYSKVGSIDRARQVFDELAIKDVVSWSNMIAAYAQTGHGTEALEMFHRM 226

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               ++ +++ + A++    + +     A  +H ++I+     +  LG+AL++MY KCG 
Sbjct: 227 DAEGIQANVITFVAVVHA-CVLVARITDARTIHRRIIEAGLESNTVLGTALLNMYGKCGG 285

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           + +A+++FD + +++V  W+++++ Y ++G+P  AL+LF +MQ+  V+PN VTF+G L A
Sbjct: 286 LPEAKKIFDKLTERDVVVWSAILEAYARHGHPRVALKLFTLMQQEGVRPNDVTFVGVLEA 345

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H G V +GR  F S+ RD+ ++P   H  CM+D+LGRAG LE+A  F+  MP K  + 
Sbjct: 346 CCHGGFVPEGRFHFASLVRDHELRPTAHHVHCMLDMLGRAGKLEEAESFIARMPVKEEAI 405

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
            W+  L SCR + D+E    AA ++F+   + R G Y+ L++    AG  +    +   M
Sbjct: 406 TWSIFLGSCRSYGDLERGKRAAEKVFEFLPHCRAG-YLTLASMYTDAGMPEEAEAVARLM 464

Query: 480 KLRGVLKDTGCS 491
           + R   K+ G S
Sbjct: 465 ESRCPKKEPGSS 476



 Score = 77.4 bits (189), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/378 (21%), Positives = 160/378 (42%), Gaps = 54/378 (14%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
            +  S L  +   +   +   +H    + G   +  ++  LL ++ K G++  A Q+FDE
Sbjct: 135 VTFTSVLNAFAGPELHRWAKLVHDLALEVGFGSHPVVATALLNMYSKVGSIDRARQVFDE 194

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
           L  + + +++ MIA Y + G   E+L +  ++ + G + +  TF  ++ A          
Sbjct: 195 LAIKDVVSWSNMIAAYAQTGHGTEALEMFHRMDAEGIQANVITFVAVVHACVLVARITD- 253

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
                R +H +I++  ++++ VL TAL++ Y K G    A+ +FD + E++V+  ++++ 
Sbjct: 254 ----ARTIHRRIIEAGLESNTVLGTALLNMYGKCGGLPEAKKIFDKLTERDVVVWSAILE 309

Query: 226 GFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEG------------YSISI----ETA 265
            +   G    A ++F    ++ V  + V +  ++E             +  S+    E  
Sbjct: 310 AYARHGHPRVALKLFTLMQQEGVRPNDVTFVGVLEACCHGGFVPEGRFHFASLVRDHELR 369

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMID- 323
             A  VHC L                DM  + GK+++A      M  K    TW+  +  
Sbjct: 370 PTAHHVHCML----------------DMLGRAGKLEEAESFIARMPVKEEAITWSIFLGS 413

Query: 324 --GYGKNGNPNQALE-LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
              YG      +A E +F  +  C  +  Y+T     +    AG+ ++   +   ME   
Sbjct: 414 CRSYGDLERGKRAAEKVFEFLPHC--RAGYLTLASMYT---DAGMPEEAEAVARLME--- 465

Query: 381 SMKPKMEHYACMVDLLGR 398
           S  PK E  +  + + GR
Sbjct: 466 SRCPKKEPGSSKIVVRGR 483


>gi|115469684|ref|NP_001058441.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|53791823|dbj|BAD53889.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|53792844|dbj|BAD53877.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113596481|dbj|BAF20355.1| Os06g0694300 [Oryza sativa Japonica Group]
 gi|125598347|gb|EAZ38127.1| hypothetical protein OsJ_22476 [Oryza sativa Japonica Group]
          Length = 648

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 147/388 (37%), Positives = 212/388 (54%), Gaps = 40/388 (10%)

Query: 147 YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR 206
           + FS + K++T  RS   LP          +L         +  +L+ +YV  G    AR
Sbjct: 142 FAFSTLAKSATASRS---LPAAA-AAHAVSVLVGGFDRHRFVENSLIGAYVACGDVGAAR 197

Query: 207 IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS------- 259
            VFD M+EK+VI  TS++  +   G +  AEE+F +   KD+V + AM+ GY+       
Sbjct: 198 KVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKDMVAWTAMVTGYAQNAMPVK 257

Query: 260 -----------------ISIETA----------RKALEVHCQLIKNVFFEDVKLGSALVD 292
                            +S+  A          R+A  V     +  F  +V +GS LVD
Sbjct: 258 ALEVFDRMAELGMVIDEVSLTGAISACAQLGALRRAAWVQEIAERTGFGNNVVVGSGLVD 317

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC-MMQECCVQPNYV 351
           MYAKCG ID+A +VF  MQ+KNV+T++SMI G   +G  ++A+ LF  M+    V+PN+V
Sbjct: 318 MYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAIALFKEMVNRANVEPNHV 377

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
           TF+G L+AC HAG+V +GR  F  M+  Y + P  +HYACMVDLLGRAG +++AL  V  
Sbjct: 378 TFIGVLTACSHAGMVGEGRYYFAQMKDKYGIMPSADHYACMVDLLGRAGLVDEALDLVRS 437

Query: 412 MPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471
           M   P+  VW ALL +CR+H   E+A + A  +FKL   +  G YV LSN LA+AGKW+ 
Sbjct: 438 MSVTPHGGVWGALLGACRIHGKSEIAKVVAEHLFKLEP-ESIGNYVLLSNILASAGKWEE 496

Query: 472 VTELREKMKLRGVLKDTGCSWVGTESGL 499
           V+++R  M+ + + KD   S      GL
Sbjct: 497 VSKVRILMRKQRLKKDPAVSLFEGRDGL 524



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 66/349 (18%), Positives = 155/349 (44%), Gaps = 43/349 (12%)

Query: 86  LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL-----VRKLVSS 140
           L+  ++ CG +  A ++FDE+ ++ + ++  ++  Y ++G +  +  +     V+ +V+ 
Sbjct: 183 LIGAYVACGDVGAARKVFDEMVEKDVISWTSIVVAYTRSGDMRSAEEVFGRCPVKDMVAW 242

Query: 141 GERPDGYTF-SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKG 199
                GY   +M +KA                 V  ++ +  +  D+V  T  + +  + 
Sbjct: 243 TAMVTGYAQNAMPVKALE---------------VFDRMAELGMVIDEVSLTGAISACAQL 287

Query: 200 GKTSYARIVFDMM----LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMI 255
           G    A  V ++        NV+  + ++  +   G +++A ++F    EK++  Y++MI
Sbjct: 288 GALRRAAWVQEIAERTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMI 347

Query: 256 EGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC---GKIDDARRVFDHMQQ 312
            G + S   A +A+ +  +++     E   +    + +   C   G + + R  F  M+ 
Sbjct: 348 AGLA-SHGRASEAIALFKEMVNRANVEPNHV--TFIGVLTACSHAGMVGEGRYYFAQMKD 404

Query: 313 K-----NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367
           K     +   +  M+D  G+ G  ++AL+L   ++   V P+   +   L AC   G  +
Sbjct: 405 KYGIMPSADHYACMVDLLGRAGLVDEALDL---VRSMSVTPHGGVWGALLGACRIHGKSE 461

Query: 368 KGREIFESMERDYSMKPK-MEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
             + + E +   + ++P+ + +Y  + ++L  AG  E+  K  + M ++
Sbjct: 462 IAKVVAEHL---FKLEPESIGNYVLLSNILASAGKWEEVSKVRILMRKQ 507



 Score = 44.7 bits (104), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 48/86 (55%), Gaps = 1/86 (1%)

Query: 73  KTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLS 132
           +TG   N  +   L+ ++ KCG +  A ++F  + ++ +  Y+ MIAG   +G+  E+++
Sbjct: 302 RTGFGNNVVVGSGLVDMYAKCGLIDEASKVFYGMQEKNVYTYSSMIAGLASHGRASEAIA 361

Query: 133 LVRKLVSSGE-RPDGYTFSMILKAST 157
           L +++V+     P+  TF  +L A +
Sbjct: 362 LFKEMVNRANVEPNHVTFIGVLTACS 387


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 138/451 (30%), Positives = 255/451 (56%), Gaps = 11/451 (2%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +L SAL+          G ++H+ + K     +   ++ L+ ++ KC  +  A + +D +
Sbjct: 286 TLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSM 345

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
           P++ + A+N +I+GY + G   +++SL  K+ S     +  T S +LK+    ++     
Sbjct: 346 PKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQA----- 400

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
             + + +H   +K  + +D  +  +L+D+Y K      A  +F+    ++++  TSMI+ 
Sbjct: 401 IKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITA 460

Query: 227 FMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
           +   G  E+A +++ +  + DI     + ++++   + ++    +  ++H   IK  F  
Sbjct: 461 YSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACA-NLSAYEQGKQLHVHAIKFGFMC 519

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           D+   ++LV+MYAKCG I+DA R F  +  + + +W++MI GY ++G+  +AL LF  M 
Sbjct: 520 DIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQML 579

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
              V PN++T +  L AC HAGLV++G++ FE ME  + +KP  EHYACM+DLLGR+G L
Sbjct: 580 RDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKL 639

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
            +A++ V  +P + +  VW ALL + R+H ++E+   AA  +F L   ++ G +V L+N 
Sbjct: 640 NEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLEP-EKSGTHVLLANI 698

Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            A+AG W++V ++R+ MK   V K+ G SW+
Sbjct: 699 YASAGMWENVAKVRKFMKDSKVKKEPGMSWI 729



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 184/372 (49%), Gaps = 24/372 (6%)

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           +++HAH+ K G   + ++   L+ L+ KC    YA ++ DE  +  + +++ +++GY++N
Sbjct: 1   MELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
           G VEE+L +  ++   G + + +TF  +LKA +  R       N+GR VH   +    ++
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRD-----LNMGRKVHGMAVVTGFES 115

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
           D  +   LV  Y K G    +R +F  ++E+NV+   ++ S ++      +A  +F++ V
Sbjct: 116 DGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMV 175

Query: 245 EKDIVVYNAMIEGYSISI--------ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
              I     M   +SISI        +      ++H  ++K     D    +ALVDMY+K
Sbjct: 176 RSGI-----MPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSK 230

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
            G+I+ A  VF  +   +V +W ++I G   +   + AL L   M+    +PN  T   A
Sbjct: 231 AGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSA 290

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC--MVDLLGRAGSLEQALKFVLEMPE 414
           L AC   G  + GR++  S+ +   M    + +A   +VD+  +   ++ A +    MP+
Sbjct: 291 LKACAAMGFKELGRQLHSSLIK---MDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPK 347

Query: 415 KPNSDVWAALLS 426
           K +   W AL+S
Sbjct: 348 K-DIIAWNALIS 358



 Score =  130 bits (326), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 105/422 (24%), Positives = 195/422 (46%), Gaps = 61/422 (14%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G K+H     TG + +  ++  L++++ KCG L  + ++F  + +R + ++N + + Y++
Sbjct: 101 GRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQ 160

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           +    E++ L +++V SG  P+ ++ S+IL A    +       +LGR +H  +LK  + 
Sbjct: 161 SELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEG-----DLGRKIHGLMLKMGLD 215

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEI 239
            D     ALVD Y K G+   A  VF  +   +V+   ++I+G +     + A    +E+
Sbjct: 216 LDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEM 275

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
                  ++   ++ ++  + ++       ++H  LIK     D+     LVDMY+KC  
Sbjct: 276 KGSGTRPNMFTLSSALKACA-AMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEM 334

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF------ 353
           +DDARR +D M +K++  W ++I GY + G+   A+ LF  M    +  N  T       
Sbjct: 335 MDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKS 394

Query: 354 ---LGALSAC--------------------------GHAGLVDKGREIFESMERDYSMKP 384
              L A+  C                          G    +D+  +IFE  ER +    
Sbjct: 395 VASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFE--ERTWE--- 449

Query: 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSCRLHDDVEMANIAA 441
            +  Y  M+    + G  E+ALK  L+M +   KP+  + ++LL++C        AN++A
Sbjct: 450 DLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNAC--------ANLSA 501

Query: 442 NE 443
            E
Sbjct: 502 YE 503



 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/301 (28%), Positives = 153/301 (50%), Gaps = 18/301 (5%)

Query: 173 VHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGF 232
           +HA ++K     D  L   LV  Y K  +  YAR + D   E +V+  +S++SG++  GF
Sbjct: 3   LHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGF 62

Query: 233 VEDAEEIFRKT----VEKDIVVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFEDVKL 286
           VE+A  +F +     V+ +   + ++++  S+   +   RK   VH   +   F  D  +
Sbjct: 63  VEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRK---VHGMAVVTGFESDGFV 119

Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
            + LV MYAKCG +DD+RR+F  + ++NV +W ++   Y ++    +A+ LF  M    +
Sbjct: 120 ANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGI 179

Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA--CMVDLLGRAGSLEQ 404
            PN  +    L+AC      D GR+I   M +   M   ++ ++   +VD+  +AG +E 
Sbjct: 180 MPNEFSISIILNACAGLQEGDLGRKIHGLMLK---MGLDLDQFSANALVDMYSKAGEIEG 236

Query: 405 ALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464
           A+  V +    P+   W A+++ C LHD  ++A +  +E+    +  RP  +  LS+ L 
Sbjct: 237 AVA-VFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEM--KGSGTRPNMFT-LSSALK 292

Query: 465 A 465
           A
Sbjct: 293 A 293


>gi|356555170|ref|XP_003545909.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Glycine max]
          Length = 741

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 148/466 (31%), Positives = 244/466 (52%), Gaps = 44/466 (9%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           ++H    + G+  +  +   L+  + KC  ++ A ++FD+L  + + ++  M + Y+  G
Sbjct: 153 EVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCYVNCG 212

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
                L++  ++  +G +P+  T S IL A   C     L    GR +H   ++  +  +
Sbjct: 213 LPRLGLAVFCEMGWNGVKPNSVTLSSILPA---CSELKDLKS--GRAIHGFAVRHGMIEN 267

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR---- 241
             + +ALV  Y +      AR+VFD+M  ++V+    +++ + +    +    +F     
Sbjct: 268 VFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSS 327

Query: 242 KTVEKDIVVYNAMIEG--------------------------YSIS--------IETARK 267
           K VE D   +NA+I G                           +IS        +E+ R 
Sbjct: 328 KGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQITISSFLPACSILESLRM 387

Query: 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
             EVHC + ++    D+   +ALV MYAKCG ++ +R VFD + +K+V  W +MI     
Sbjct: 388 GKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNVFDMICRKDVVAWNTMIIANAM 447

Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
           +GN  + L LF  M +  ++PN VTF G LS C H+ LV++G +IF SM RD+ ++P   
Sbjct: 448 HGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHSRLVEEGLQIFNSMGRDHLVEPDAN 507

Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           HYACMVD+  RAG L +A +F+  MP +P +  W ALL +CR++ +VE+A I+AN++F++
Sbjct: 508 HYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALLGACRVYKNVELAKISANKLFEI 567

Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
             N+ PG YV+L N L  A  W   +E R  MK RG+ K  GCSW+
Sbjct: 568 EPNN-PGNYVSLFNILVTAKLWSEASEARILMKERGITKTPGCSWL 612



 Score =  117 bits (292), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 160/341 (46%), Gaps = 24/341 (7%)

Query: 61  PFYGL-------KIHAHITKTGVKPN--TNI----SIKLLILHLKCGALKYAGQMFDELP 107
           PF+ +        I   +T T V P+  TNI     ++LL   L  G  + A Q+FD +P
Sbjct: 34  PFFSITHSTQSSSIWKQLTSTKVAPSVPTNIPSHLGLRLLKAALNVGDFRRAQQLFDNIP 93

Query: 108 QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR 167
           Q   +  + +I+ +   G   E++ L   L + G +P    F  + KA   C ++    R
Sbjct: 94  QPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPHNSVFLTVAKA---CGASGDASR 150

Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
              + VH   ++C + +D  L  AL+ +Y K      AR VFD ++ K+V+  TSM S +
Sbjct: 151 V--KEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFDDLVVKDVVSWTSMSSCY 208

Query: 228 MSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFED 283
           ++ G       +F +     V+ + V  ++++   S  ++  +    +H   +++   E+
Sbjct: 209 VNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACS-ELKDLKSGRAIHGFAVRHGMIEN 267

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
           V + SALV +YA+C  +  AR VFD M  ++V +W  ++  Y  N   ++ L LF  M  
Sbjct: 268 VFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFTNREYDKGLALFSQMSS 327

Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP 384
             V+ +  T+   +  C   G  +K  E+   M+ +   KP
Sbjct: 328 KGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQ-NLGFKP 367



 Score = 90.9 bits (224), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 116/241 (48%), Gaps = 9/241 (3%)

Query: 192 LVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVY 251
           L+ + +  G    A+ +FD + + +    +++IS F ++G   +A  ++     + I  +
Sbjct: 72  LLKAALNVGDFRRAQQLFDNIPQPDPTTCSTLISAFTTRGLPNEAIRLYASLRARGIKPH 131

Query: 252 NAMIEGYSISIET---ARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFD 308
           N++    + +      A +  EVH   I+     D  LG+AL+  Y KC  ++ ARRVFD
Sbjct: 132 NSVFLTVAKACGASGDASRVKEVHDDAIRCGMMSDAFLGNALIHAYGKCKCVEGARRVFD 191

Query: 309 HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDK 368
            +  K+V +WTSM   Y   G P   L +FC M    V+PN VT    L AC     +  
Sbjct: 192 DLVVKDVVSWTSMSSCYVNCGLPRLGLAVFCEMGWNGVKPNSVTLSSILPACSELKDLKS 251

Query: 369 GREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV--WAALLS 426
           GR I     R + M   +   + +V L  R  S++QA + V ++   P+ DV  W  +L+
Sbjct: 252 GRAIHGFAVR-HGMIENVFVCSALVSLYARCLSVKQA-RLVFDL--MPHRDVVSWNGVLT 307

Query: 427 S 427
           +
Sbjct: 308 A 308



 Score = 80.9 bits (198), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/300 (23%), Positives = 130/300 (43%), Gaps = 47/300 (15%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQR-------TLSAY-- 114
           G  IH    + G+  N  +   L+ L+ +C ++K A  +FD +P R        L+AY  
Sbjct: 252 GRAIHGFAVRHGMIENVFVCSALVSLYARCLSVKQARLVFDLMPHRDVVSWNGVLTAYFT 311

Query: 115 --------------------------NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYT 148
                                     N +I G ++NGQ E+++ ++RK+ + G +P+  T
Sbjct: 312 NREYDKGLALFSQMSSKGVEADEATWNAVIGGCMENGQTEKAVEMLRKMQNLGFKPNQIT 371

Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIV 208
            S  L A +   S       +G+ VH  + +  +  D    TALV  Y K G  + +R V
Sbjct: 372 ISSFLPACSILES-----LRMGKEVHCYVFRHWLIGDLTTMTALVYMYAKCGDLNLSRNV 426

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIET 264
           FDM+  K+V+   +MI      G   +   +F   ++  I    V +  ++ G S S   
Sbjct: 427 FDMICRKDVVAWNTMIIANAMHGNGREVLLLFESMLQSGIKPNSVTFTGVLSGCSHS-RL 485

Query: 265 ARKALEVHCQLIKNVFFE-DVKLGSALVDMYAKCGKIDDARRVFDHM-QQKNVFTWTSMI 322
             + L++   + ++   E D    + +VD++++ G++ +A      M  +     W +++
Sbjct: 486 VEEGLQIFNSMGRDHLVEPDANHYACMVDVFSRAGRLHEAYEFIQRMPMEPTASAWGALL 545


>gi|449454362|ref|XP_004144924.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62260,
           mitochondrial-like [Cucumis sativus]
          Length = 664

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 157/503 (31%), Positives = 250/503 (49%), Gaps = 99/503 (19%)

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL-----------VRKLV 138
           + K G +  A ++F+E+P+R + ++N M++GYL NG VE+++             +R L+
Sbjct: 162 YAKSGMMDKAEELFNEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALI 221

Query: 139 SS-----------------------GERPDGYTF---------------SMILKASTCC- 159
           S                        G+  D Y                  +  +   CC 
Sbjct: 222 SGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCD 281

Query: 160 ----RSNVPLPRNL-------GRMVHA-QILKCDVKADDVLYTALVDSYVKGGKTSYARI 207
               R NV    ++       G +V A ++    V+ D   +  ++  YV+      A  
Sbjct: 282 CGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILDMKEASN 341

Query: 208 VFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS-------- 259
           +F  M E + +    MISGF   G ++ A ++F++  EK +V +N+MI GY         
Sbjct: 342 LFSRMPEPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVSWNSMISGYEKNEDYKGA 401

Query: 260 -------------------ISIETARKAL-------EVHCQLIKNVFFEDVKLGSALVDM 293
                               SI +A   L       ++H QL+   F  D+ + ++LV M
Sbjct: 402 MNIFLQMQLEGKKPDRHTLSSILSACAGLVDLVLGTQIH-QLVTKAFIADLPINNSLVTM 460

Query: 294 YAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
           Y++CG I +AR VFD M  Q++V +W +MI GY  +G   +AL+LF +M++C VQP+Y+T
Sbjct: 461 YSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYHGFATEALQLFDLMKQCNVQPSYIT 520

Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
           F+  L+AC HAGL+++GR  F SM   + +KP++EHYA +VD++GR G LE+A+  +  M
Sbjct: 521 FISVLNACAHAGLIEEGRREFNSMVNTHGIKPQVEHYAALVDIIGRHGQLEEAMSLINSM 580

Query: 413 PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSV 472
           P +P+  VW ALL +C++H++VEMA  AA  + KL   +    YV L N  A  G+WD  
Sbjct: 581 PCEPDKAVWGALLGACKVHNNVEMARAAAEALMKLQP-ESSAPYVLLHNMYADVGRWDDA 639

Query: 473 TELREKMKLRGVLKDTGCSWVGT 495
            E+R  M+   V KD G S V +
Sbjct: 640 AEMRTMMEKNNVQKDAGYSRVDS 662



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 97/420 (23%), Positives = 182/420 (43%), Gaps = 77/420 (18%)

Query: 79  NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ--VEESLSLVRK 136
           NT    +++  ++K   +  A Q+F+E+P R + ++N M++GY+  G   VE + ++  +
Sbjct: 87  NTITWNRMITAYVKRREMLKARQLFEEMPNRDIVSWNLMLSGYISCGGKFVERARNMFDQ 146

Query: 137 L-----VSSGERPDGYTFSMILKASTCCRSNVPLPRNL--------GRMVHAQILKCD-- 181
           +     VS      GY  S ++  +    + +P  RN+        G +++  + K    
Sbjct: 147 MPETDCVSWNTMLSGYAKSGMMDKAEELFNEMP-ERNVVSWNAMVSGYLMNGHVEKAIEF 205

Query: 182 -------------------------VKADDVL---------------YTALVDSYVKGGK 201
                                    V+A+ +L               Y  L+  Y + G 
Sbjct: 206 FKLMPKRDSASLRALISGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGM 265

Query: 202 TSYARIVFDMM--------LEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNA 253
              AR +FD +          +NVI   SMI  ++  G +  A E+F K VE+D   +N 
Sbjct: 266 AYEARKLFDRIPLCCDCGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNT 325

Query: 254 MIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK 313
           MI GY + I   ++A  +  ++ +     D    + ++  +++ G +  A  +F  + +K
Sbjct: 326 MISGY-VQILDMKEASNLFSRMPE----PDTLSWNMMISGFSEIGSLKLAHDLFKRIPEK 380

Query: 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD--KGRE 371
           ++ +W SMI GY KN +   A+ +F  MQ    +P+  T    LSAC  AGLVD   G +
Sbjct: 381 SLVSWNSMISGYEKNEDYKGAMNIFLQMQLEGKKPDRHTLSSILSAC--AGLVDLVLGTQ 438

Query: 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           I + + + +     + +   +V +  R G++ +A     EM  + +   W A++     H
Sbjct: 439 IHQLVTKAFIADLPINN--SLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYAYH 496



 Score = 85.9 bits (211), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 154/359 (42%), Gaps = 37/359 (10%)

Query: 91  LKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFS 150
           ++ G +  A ++FD         +N MI  Y+K  ++ ++    R+L       D  +++
Sbjct: 68  IRTGRINEARELFDSTEHWNTITWNRMITAYVKRREMLKA----RQLFEEMPNRDIVSWN 123

Query: 151 MILKASTCCRSN-VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVF 209
           ++L     C    V   RN+   +         + D V +  ++  Y K G    A  +F
Sbjct: 124 LMLSGYISCGGKFVERARNMFDQMP--------ETDCVSWNTMLSGYAKSGMMDKAEELF 175

Query: 210 DMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL 269
           + M E+NV+   +M+SG++  G VE A E F+   ++D     A+I G  I  +   +A 
Sbjct: 176 NEMPERNVVSWNAMVSGYLMNGHVEKAIEFFKLMPKRDSASLRALISGL-IQNDKLVEAE 234

Query: 270 EVHCQLIKNVFFED-VKLGSALVDMYAKCGKIDDARRVFDHM--------QQKNVFTWTS 320
            +  Q   NV   D V   + L+  Y + G   +AR++FD +         ++NV +W S
Sbjct: 235 RILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCDCGYSRRNVISWNS 294

Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD--KGREIFESMER 378
           MI  Y + G+   A ELF  M E        TF       G+  ++D  +   +F  M  
Sbjct: 295 MIMCYVRAGDIVSARELFDKMVE------RDTFSWNTMISGYVQILDMKEASNLFSRMP- 347

Query: 379 DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
               +P    +  M+      GSL+ A      +PEK     W +++S    ++D + A
Sbjct: 348 ----EPDTLSWNMMISGFSEIGSLKLAHDLFKRIPEKSLVS-WNSMISGYEKNEDYKGA 401



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 81/326 (24%), Positives = 154/326 (47%), Gaps = 41/326 (12%)

Query: 115 NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH 174
           N  I+  ++ G++ E+    R+L  S E  +  T++ ++ A    R           M+ 
Sbjct: 61  NKKISYLIRTGRINEA----RELFDSTEHWNTITWNRMITAYVKRRE----------MLK 106

Query: 175 AQILKCDVKADDVL-YTALVDSYVK-GGK-TSYARIVFDMMLEKNVICSTSMISGFMSQG 231
           A+ L  ++   D++ +  ++  Y+  GGK    AR +FD M E + +   +M+SG+   G
Sbjct: 107 ARQLFEEMPNRDIVSWNLMLSGYISCGGKFVERARNMFDQMPETDCVSWNTMLSGYAKSG 166

Query: 232 FVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALV 291
            ++ AEE+F +  E+++V +NAM+ GY ++     KA+E    + K     D     AL+
Sbjct: 167 MMDKAEELFNEMPERNVVSWNAMVSGYLMNGHV-EKAIEFFKLMPK----RDSASLRALI 221

Query: 292 DMYAKCGKIDDARRVFDHM-----QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC- 345
               +  K+ +A R+         +   V  + ++I GYG+ G   +A +LF  +  CC 
Sbjct: 222 SGLIQNDKLVEAERILLQYGGNVGKGDLVDAYNTLIAGYGQKGMAYEARKLFDRIPLCCD 281

Query: 346 ---VQPNYVTFLGALSACGHAGLVDKGREIFESM-ERD-YSMKPKMEHYACMVDLLGRAG 400
               + N +++   +     AG +   RE+F+ M ERD +S    +  Y  ++D      
Sbjct: 282 CGYSRRNVISWNSMIMCYVRAGDIVSARELFDKMVERDTFSWNTMISGYVQILD------ 335

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLS 426
            +++A      MPE P++  W  ++S
Sbjct: 336 -MKEASNLFSRMPE-PDTLSWNMMIS 359



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 106/255 (41%), Gaps = 42/255 (16%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP-QRTLSAYNYMIAGYL 122
           G +IH  +TK  +  +  I+  L+ ++ +CGA+  A  +FDE+  QR + ++N MI GY 
Sbjct: 436 GTQIHQLVTKAFI-ADLPINNSLVTMYSRCGAIVEARMVFDEMNLQRDVISWNAMIGGYA 494

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            +G   E+L L   +     +P   TF  +L A           R    MV+   +K  V
Sbjct: 495 YHGFATEALQLFDLMKQCNVQPSYITFISVLNACAHAGLIEEGRREFNSMVNTHGIKPQV 554

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
           +     Y ALVD   + G+   A     M L  ++ C                       
Sbjct: 555 EH----YAALVDIIGRHGQLEEA-----MSLINSMPC----------------------- 582

Query: 243 TVEKDIVVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
             E D  V+ A++    +  ++E AR A E   +L      E       L +MYA  G+ 
Sbjct: 583 --EPDKAVWGALLGACKVHNNVEMARAAAEALMKLQP----ESSAPYVLLHNMYADVGRW 636

Query: 301 DDARRVFDHMQQKNV 315
           DDA  +   M++ NV
Sbjct: 637 DDAAEMRTMMEKNNV 651


>gi|357154827|ref|XP_003576915.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like, partial [Brachypodium distachyon]
          Length = 735

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 135/434 (31%), Positives = 249/434 (57%), Gaps = 13/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H +  K  ++ +  ++  L+ ++ K G+L+ A  +F+++  R + ++N MIA  ++
Sbjct: 297 GREVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIANLVQ 356

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG   E+  LV K+   GE P+  T   +L A  C R         G+ +HA  ++  + 
Sbjct: 357 NGAESEAFGLVIKMQKDGECPNSITLVNLLPA--CSRMA---SLKTGKQIHAWSIRTGLM 411

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  +  AL+D Y K G+   A+ +FD+  EK+ +   ++I G+    +  ++  +F++ 
Sbjct: 412 FDLFISNALIDMYAKCGQLRLAQSIFDLS-EKDDVSYNTLILGYSQSPWSFESLNLFKQL 470

Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
               +E D + +   +   + ++ + ++  E+H  L++ +      L + L+ +Y K G 
Sbjct: 471 SSVGIEYDAISFMGALTACT-NLSSFKQGKEIHGVLVRRLLSNHPFLANTLLGLYTKGGM 529

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           +D A ++F+ +++K+V +W +MI GYG +G  + A  LF +M++  V  ++V+++  LS 
Sbjct: 530 LDTASKIFNRIKEKDVASWNNMIMGYGMHGQIDAAFHLFDLMKDHGVTYDHVSYIAVLSV 589

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C H GLV++G++ F  M    +++P+  HYACMVDLLGR+G L ++++ +L+MP   NSD
Sbjct: 590 CSHGGLVERGKKYFSHMLAQ-NLEPQQMHYACMVDLLGRSGQLTESVEIILDMPFHANSD 648

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW ALL +CR+H ++E+A  AA+ +F+L   +  G Y  L N  A AG+W+   ++R  M
Sbjct: 649 VWGALLGACRIHGNIELAQYAADHLFELKP-EHSGYYSVLRNMYAEAGRWNEAHKIRTLM 707

Query: 480 KLRGVLKDTGCSWV 493
           K R V K+   SWV
Sbjct: 708 KSRKVQKNPAYSWV 721



 Score =  127 bits (320), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 101/384 (26%), Positives = 194/384 (50%), Gaps = 23/384 (5%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +GL +H  + KTG+    N+   L+ ++ K G ++ + ++F+ +P+R   ++N  I  +L
Sbjct: 195 FGLGVHGLVLKTGLDSIVNLGNALVDMYGKFGHVEASMKVFEGMPERNEVSWNSAIGCFL 254

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR-NLGRMVHAQILKCD 181
             G   + L+L R +   G  P   T S +L A       V L   +LGR VH   +K  
Sbjct: 255 NAGLYGDVLALFRGMSERGFMPGSITLSSLLPAL------VELGYFDLGREVHGYSIKRA 308

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
           ++ D  +  +LVD Y K G    A  VF+ +  +NV+   +MI+  +  G   +A  +  
Sbjct: 309 MELDIFVANSLVDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIANLVQNGAESEAFGLVI 368

Query: 242 KTVEKD------IVVYNAMIEGYSI-SIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
           K ++KD      I + N +     + S++T +   ++H   I+     D+ + +AL+DMY
Sbjct: 369 K-MQKDGECPNSITLVNLLPACSRMASLKTGK---QIHAWSIRTGLMFDLFISNALIDMY 424

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           AKCG++  A+ +FD + +K+  ++ ++I GY ++    ++L LF  +    ++ + ++F+
Sbjct: 425 AKCGQLRLAQSIFD-LSEKDDVSYNTLILGYSQSPWSFESLNLFKQLSSVGIEYDAISFM 483

Query: 355 GALSACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
           GAL+AC +     +G+EI   +  R  S  P + +   ++ L  + G L+ A K    + 
Sbjct: 484 GALTACTNLSSFKQGKEIHGVLVRRLLSNHPFLAN--TLLGLYTKGGMLDTASKIFNRIK 541

Query: 414 EKPNSDVWAALLSSCRLHDDVEMA 437
           EK  +  W  ++    +H  ++ A
Sbjct: 542 EKDVAS-WNNMIMGYGMHGQIDAA 564



 Score =  122 bits (307), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 98/363 (26%), Positives = 170/363 (46%), Gaps = 22/363 (6%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           GL++HA   ++G   +      L+  +  CG    A ++FDE+P R + ++N +++ +L 
Sbjct: 95  GLELHAAALRSGHLADVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLA 154

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N   +++   +  ++ SG   +    S++     C    V      G  VH  +LK  + 
Sbjct: 155 NKMFDDARQALLSMMRSGVPVN--VASLVSVVPAC---GVEQEGGFGLGVHGLVLKTGLD 209

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +   L  ALVD Y K G    +  VF+ M E+N +   S I  F++ G   D   +FR  
Sbjct: 210 SIVNLGNALVDMYGKFGHVEASMKVFEGMPERNEVSWNSAIGCFLNAGLYGDVLALFRGM 269

Query: 244 VEKDIV--------VYNAMIE-GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
            E+  +        +  A++E GY    +  R   EVH   IK     D+ + ++LVDMY
Sbjct: 270 SERGFMPGSITLSSLLPALVELGY---FDLGR---EVHGYSIKRAMELDIFVANSLVDMY 323

Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
           AK G ++ A  VF+ ++ +NV +W +MI    +NG  ++A  L   MQ+    PN +T +
Sbjct: 324 AKFGSLEKACAVFEKIEVRNVVSWNAMIANLVQNGAESEAFGLVIKMQKDGECPNSITLV 383

Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
             L AC     +  G++I     R   M       A ++D+  + G L  A + + ++ E
Sbjct: 384 NLLPACSRMASLKTGKQIHAWSIRTGLMFDLFISNA-LIDMYAKCGQLRLA-QSIFDLSE 441

Query: 415 KPN 417
           K +
Sbjct: 442 KDD 444



 Score =  100 bits (250), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/286 (29%), Positives = 128/286 (44%), Gaps = 22/286 (7%)

Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
           G  +HA  L+    AD      LV  Y   G    AR VFD M  ++V+   S++S F++
Sbjct: 95  GLELHAAALRSGHLADVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLA 154

Query: 230 QGFVEDAEE----IFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
               +DA +    + R  V  ++    +++    +  E     L VH  ++K      V 
Sbjct: 155 NKMFDDARQALLSMMRSGVPVNVASLVSVVPACGVEQEGGF-GLGVHGLVLKTGLDSIVN 213

Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
           LG+ALVDMY K G ++ + +VF+ M ++N  +W S I  +   G     L LF  M E  
Sbjct: 214 LGNALVDMYGKFGHVEASMKVFEGMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERG 273

Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH----YACMVDLLGRAGS 401
             P  +T    L A    G  D GRE+       YS+K  ME        +VD+  + GS
Sbjct: 274 FMPGSITLSSLLPALVELGYFDLGREV-----HGYSIKRAMELDIFVANSLVDMYAKFGS 328

Query: 402 LEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
           LE+A   V E  E  N   W A++++        + N A +E F L
Sbjct: 329 LEKACA-VFEKIEVRNVVSWNAMIANL-------VQNGAESEAFGL 366



 Score = 71.6 bits (174), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 11/154 (7%)

Query: 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
           K LE+H   +++    DV  G+ LV  YA CG   DARRVFD M  ++V +W S++  + 
Sbjct: 94  KGLELHAAALRSGHLADVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFL 153

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSAC-----GHAGLVDKGREIFESMERDYS 381
            N   + A +    M    V  N  + +  + AC     G  GL   G  +   ++   +
Sbjct: 154 ANKMFDDARQALLSMMRSGVPVNVASLVSVVPACGVEQEGGFGLGVHGLVLKTGLDSIVN 213

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
           +         +VD+ G+ G +E ++K    MPE+
Sbjct: 214 LGN------ALVDMYGKFGHVEASMKVFEGMPER 241



 Score = 51.2 bits (121), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/194 (22%), Positives = 88/194 (45%), Gaps = 6/194 (3%)

Query: 45  ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
           A S   AL    N  +   G +IH  + +  +  +  ++  LL L+ K G L  A ++F+
Sbjct: 479 AISFMGALTACTNLSSFKQGKEIHGVLVRRLLSNHPFLANTLLGLYTKGGMLDTASKIFN 538

Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVP 164
            + ++ ++++N MI GY  +GQ++ +  L   +   G   D  ++  +L   + C     
Sbjct: 539 RIKEKDVASWNNMIMGYGMHGQIDAAFHLFDLMKDHGVTYDHVSYIAVL---SVCSHGGL 595

Query: 165 LPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK-TSYARIVFDMMLEKNVICSTSM 223
           + R  G+   + +L  +++   + Y  +VD   + G+ T    I+ DM    N     ++
Sbjct: 596 VER--GKKYFSHMLAQNLEPQQMHYACMVDLLGRSGQLTESVEIILDMPFHANSDVWGAL 653

Query: 224 ISGFMSQGFVEDAE 237
           +      G +E A+
Sbjct: 654 LGACRIHGNIELAQ 667


>gi|356495733|ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Glycine max]
          Length = 770

 Score =  250 bits (639), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 139/425 (32%), Positives = 234/425 (55%), Gaps = 9/425 (2%)

Query: 75  GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV 134
           G +P+    I +L   +K G ++   Q+FD +P  +L+++N +++GY +N    E++ L 
Sbjct: 345 GYEPDDVTYINMLTACVKSGDVRTGRQIFDCMPCPSLTSWNAILSGYNQNADHREAVELF 404

Query: 135 RKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVD 194
           RK+    + PD  T ++IL  S+C           G+ VHA   K     D  + ++L++
Sbjct: 405 RKMQFQCQHPDRTTLAVIL--SSCAELGF---LEAGKEVHAASQKFGFYDDVYVASSLIN 459

Query: 195 SYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYN-- 252
            Y K GK   ++ VF  + E +V+C  SM++GF      +DA   F+K  +         
Sbjct: 460 VYSKCGKMELSKHVFSKLPELDVVCWNSMLAGFSINSLGQDALSFFKKMRQLGFFPSEFS 519

Query: 253 -AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311
            A +      + +  +  + H Q++K+ F +D+ +GS+L++MY KCG ++ AR  FD M 
Sbjct: 520 FATVVSSCAKLSSLFQGQQFHAQIVKDGFLDDIFVGSSLIEMYCKCGDVNGARCFFDVMP 579

Query: 312 QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371
            +N  TW  MI GY +NG+ + AL L+  M     +P+ +T++  L+AC H+ LVD+G E
Sbjct: 580 GRNTVTWNEMIHGYAQNGDGHNALCLYNDMISSGEKPDDITYVAVLTACSHSALVDEGLE 639

Query: 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
           IF +M + Y + PK+ HY C++D L RAG   +    +  MP K ++ VW  +LSSCR+H
Sbjct: 640 IFNAMLQKYGVVPKVAHYTCIIDCLSRAGRFNEVEVILDAMPCKDDAVVWEVVLSSCRIH 699

Query: 432 DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
            ++ +A  AA E+++L+  +   +YV L+N  ++ GKWD    +R+ M    V KD G S
Sbjct: 700 ANLSLAKRAAEELYRLDPQN-SASYVLLANMYSSLGKWDDAHVVRDLMSHNQVRKDPGYS 758

Query: 492 WVGTE 496
              T+
Sbjct: 759 RNDTQ 763



 Score =  139 bits (350), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 109/424 (25%), Positives = 195/424 (45%), Gaps = 47/424 (11%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           +L + +QH I +     G  +HA + +  +  +T +S   + L+ KC  +  A  +FD +
Sbjct: 8   NLANLVQHCITNKAHLSGKVVHARLFRLALFSDTFLSNHFIELYSKCDHIASACHVFDNI 67

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESL---------------SLVRKLVSSG-ERP------ 144
           P + + ++N ++A Y K   ++ +                +L+  +V  G ER       
Sbjct: 68  PHKNIFSWNAILAAYCKARNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQALDTYD 127

Query: 145 ----DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGG 200
               DG   S I  A+        L  + GR  H  ++K  ++++  +  AL+  Y K G
Sbjct: 128 SVMLDGVIPSHITFATVFSACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCMYAKCG 187

Query: 201 KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIE 256
             + A  VF  + E N +  T+M+ G      +++A E+F    RK +  D V  ++M+ 
Sbjct: 188 LNADALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSSMLG 247

Query: 257 ---------GYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVF 307
                    G    I T  +  ++H   +K  F  D+ L ++L+DMYAK G +D A +VF
Sbjct: 248 VCAKGERDVGPCHGISTNAQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGDMDSAEKVF 307

Query: 308 DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367
            ++ + +V +W  MI GYG   N  +A E    MQ    +P+ VT++  L+AC  +G V 
Sbjct: 308 VNLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTACVKSGDVR 367

Query: 368 KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP---EKPNSDVWAAL 424
            GR+IF+ M       P +  +  ++    +     +A++   +M    + P+    A +
Sbjct: 368 TGRQIFDCMP-----CPSLTSWNAILSGYNQNADHREAVELFRKMQFQCQHPDRTTLAVI 422

Query: 425 LSSC 428
           LSSC
Sbjct: 423 LSSC 426



 Score =  105 bits (262), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 113/529 (21%), Positives = 218/529 (41%), Gaps = 89/529 (16%)

Query: 33  LQNYDS------LSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKL 86
           L  YDS      + + +T  ++ SA    +++D    G + H  + K G++ N  +   L
Sbjct: 123 LDTYDSVMLDGVIPSHITFATVFSACGSLLDADC---GRRTHGVVIKVGLESNIYVVNAL 179

Query: 87  LILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDG 146
           L ++ KCG    A ++F ++P+     +  M+ G  +  Q++E+  L R ++  G R D 
Sbjct: 180 LCMYAKCGLNADALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDS 239

Query: 147 YTFSMILKASTCCRSNVPLPRNL-----GRMVHAQILKCDVKADDVLYTALVDSYVKGGK 201
            + S +L        +V     +     G+ +H   +K   + D  L  +L+D Y K G 
Sbjct: 240 VSLSSMLGVCAKGERDVGPCHGISTNAQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGD 299

Query: 202 TSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVY------ 251
              A  VF  +   +V+    MI+G+ ++   E A E  ++      E D V Y      
Sbjct: 300 MDSAEKVFVNLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTA 359

Query: 252 -------------------------NAMIEGYSI------SIETARK------------- 267
                                    NA++ GY+       ++E  RK             
Sbjct: 360 CVKSGDVRTGRQIFDCMPCPSLTSWNAILSGYNQNADHREAVELFRKMQFQCQHPDRTTL 419

Query: 268 ---------------ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ 312
                            EVH    K  F++DV + S+L+++Y+KCGK++ ++ VF  + +
Sbjct: 420 AVILSSCAELGFLEAGKEVHAASQKFGFYDDVYVASSLINVYSKCGKMELSKHVFSKLPE 479

Query: 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
            +V  W SM+ G+  N     AL  F  M++    P+  +F   +S+C     + +G++ 
Sbjct: 480 LDVVCWNSMLAGFSINSLGQDALSFFKKMRQLGFFPSEFSFATVVSSCAKLSSLFQGQQF 539

Query: 373 FESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHD 432
              + +D  +       + ++++  + G +  A  F   MP + N+  W  ++     + 
Sbjct: 540 HAQIVKDGFLDDIFVG-SSLIEMYCKCGDVNGARCFFDVMPGR-NTVTWNEMIHGYAQNG 597

Query: 433 DVEMANIAANEIFKLNANDRPG--AYVALSNTLAAAGKWDSVTELREKM 479
           D   A    N++  +++ ++P    YVA+    + +   D   E+   M
Sbjct: 598 DGHNALCLYNDM--ISSGEKPDDITYVAVLTACSHSALVDEGLEIFNAM 644



 Score = 85.9 bits (211), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 62/256 (24%), Positives = 126/256 (49%), Gaps = 11/256 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA   K G   +  ++  L+ ++ KCG ++ +  +F +LP+  +  +N M+AG+  
Sbjct: 435 GKEVHAASQKFGFYDDVYVASSLINVYSKCGKMELSKHVFSKLPELDVVCWNSMLAGFSI 494

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           N   +++LS  +K+   G  P  ++F+ ++  S+C + +       G+  HAQI+K    
Sbjct: 495 NSLGQDALSFFKKMRQLGFFPSEFSFATVV--SSCAKLSSLFQ---GQQFHAQIVKDGFL 549

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
            D  + ++L++ Y K G  + AR  FD+M  +N +    MI G+   G   +A  ++   
Sbjct: 550 DDIFVGSSLIEMYCKCGDVNGARCFFDVMPGRNTVTWNEMIHGYAQNGDGHNALCLYNDM 609

Query: 244 V----EKDIVVYNAMIEGYSISIETARKALEV-HCQLIKNVFFEDVKLGSALVDMYAKCG 298
           +    + D + Y A++   S S     + LE+ +  L K      V   + ++D  ++ G
Sbjct: 610 ISSGEKPDDITYVAVLTACSHS-ALVDEGLEIFNAMLQKYGVVPKVAHYTCIIDCLSRAG 668

Query: 299 KIDDARRVFDHMQQKN 314
           + ++   + D M  K+
Sbjct: 669 RFNEVEVILDAMPCKD 684



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 11/186 (5%)

Query: 62  FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
           F G + HA I K G   +  +   L+ ++ KCG +  A   FD +P R    +N MI GY
Sbjct: 534 FQGQQFHAQIVKDGFLDDIFVGSSLIEMYCKCGDVNGARCFFDVMPGRNTVTWNEMIHGY 593

Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
            +NG    +L L   ++SSGE+PD  T+  +L   T C  +  +   L  + +A + K  
Sbjct: 594 AQNGDGHNALCLYNDMISSGEKPDDITYVAVL---TACSHSALVDEGL-EIFNAMLQKYG 649

Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN------VICSTSMISGFMSQGFVED 235
           V      YT ++D   + G+ +   ++ D M  K+      V+ S+  I   +S      
Sbjct: 650 VVPKVAHYTCIIDCLSRAGRFNEVEVILDAMPCKDDAVVWEVVLSSCRIHANLSLA-KRA 708

Query: 236 AEEIFR 241
           AEE++R
Sbjct: 709 AEELYR 714



 Score = 59.7 bits (143), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 48/208 (23%), Positives = 86/208 (41%), Gaps = 37/208 (17%)

Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
           VH +L +   F D  L +  +++Y+KC  I  A  VFD++  KN+F+W +++  Y K  N
Sbjct: 28  VHARLFRLALFSDTFLSNHFIELYSKCDHIASACHVFDNIPHKNIFSWNAILAAYCKARN 87

Query: 331 PNQALELFCMMQE---------------CC----------------VQPNYVTFLGALSA 359
              A  LF  M +               C                 V P+++TF    SA
Sbjct: 88  LQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQALDTYDSVMLDGVIPSHITFATVFSA 147

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           CG     D GR     + +   ++  +     ++ +  + G    AL+   ++PE PN  
Sbjct: 148 CGSLLDADCGRRTHGVVIK-VGLESNIYVVNALLCMYAKCGLNADALRVFRDIPE-PNEV 205

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKL 447
            +  ++      + ++     A E+F+L
Sbjct: 206 TFTTMMGGLAQTNQIK----EAAELFRL 229


>gi|449461160|ref|XP_004148310.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g18840-like [Cucumis
            sativus]
          Length = 1096

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 165/502 (32%), Positives = 261/502 (51%), Gaps = 73/502 (14%)

Query: 63   YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYA-------GQMFD----------- 104
            YG ++H+ + KT        +  L+ ++ KCG  K A       G++ D           
Sbjct: 564  YGKQLHSFMLKTANDLTVFAASSLIDMYSKCGFFKEACRVYYGCGEVVDSVSRNAMVAAC 623

Query: 105  ---------------ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF 149
                           EL Q  + A+N MI+G+++NG  EESL L  ++       + +TF
Sbjct: 624  CREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYEEESLKLFVRMADEKVGWNEHTF 683

Query: 150  SMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVF 209
            + +L A +  RS       LG+ VHA +LK  + A+  + + LVD Y K     YA+ V 
Sbjct: 684  ASVLSACSNLRS-----LKLGKEVHAYVLKNRLIANPFICSGLVDVYCKCNNMRYAKSVN 738

Query: 210  DMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS---------- 259
              +  +NV   TSMI G+ SQG + +A ++F    EK+  V+ A+  GY           
Sbjct: 739  SELRMQNVYSITSMIVGYSSQGNMAEARKLFDSLDEKNSAVWTALFFGYVKLQQCEAVFE 798

Query: 260  -----------------ISIETA---RKAL----EVHCQLIKNVFFEDVKLGSALVDMYA 295
                             ISI  A   + AL    ++H  +++     D KL S+LVDMY+
Sbjct: 799  LLSEYRKEAKVPDVLILISIIGACAIQAALVPGKQIHSYMLRAGIKLDTKLTSSLVDMYS 858

Query: 296  KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
            KCG I  A R+F  +  K+   +  MI GY  +G  N+A++LF  M +   +P+ +TF+ 
Sbjct: 859  KCGSIIYAERIFREVTDKDSIIYNIMIAGYAHHGWENEAVQLFKEMVKHGFKPDAITFVA 918

Query: 356  ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
             LSAC H GLV+ G   F+SM  DY++ P+++HYACM+DL GRA  L++AL+F+ ++P +
Sbjct: 919  LLSACRHGGLVELGEHFFDSMSNDYNICPEIDHYACMIDLYGRANQLDKALEFMRKIPIQ 978

Query: 416  PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
             ++ +W A L++CR++ + E+A  A +E+  +   +    YV L+N  AA G W+ +  +
Sbjct: 979  LDAVIWGAFLNACRINGNAELARKAEDELLVIEG-ENGSRYVQLANVYAAEGNWEEMGRI 1037

Query: 476  REKMKLRGVLKDTGCSWVGTES 497
            R+KMK + V K+ GCSWV  ES
Sbjct: 1038 RKKMKGKEVKKNAGCSWVFVES 1059



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 105/457 (22%), Positives = 189/457 (41%), Gaps = 113/457 (24%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +GL  H    K+G  P   +S +L+  + K G L  A ++FDE+P+R + ++N +IA Y+
Sbjct: 429 HGLLCHLQGIKSGFTPTIFMSNQLITFYAKHGLLNDAQKLFDEMPERNVFSWNAIIAAYV 488

Query: 123 KNGQVEESLSLV-----------RKLVSSGERPDGYT---------------------FS 150
           K+  + ++ +L              ++S   R DGY                      F+
Sbjct: 489 KSHNLRQARALFDSAVCKDLVTYNSMLSGYARSDGYQGQALGFFMEMQTAPDMIRIDEFT 548

Query: 151 MI----LKASTCCRSNVPLPRNLGRMVHAQILK--------------------------- 179
           +I    L A  C  S        G+ +H+ +LK                           
Sbjct: 549 LITMLNLTAKLCVIS-------YGKQLHSFMLKTANDLTVFAASSLIDMYSKCGFFKEAC 601

Query: 180 -----CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN-VICSTSMISGFMSQGFV 233
                C    D V   A+V +  + G+   A  +F   LE+N V+   +MISGF+  G+ 
Sbjct: 602 RVYYGCGEVVDSVSRNAMVAACCREGEIDVALDLFWKELEQNDVVAWNTMISGFVQNGYE 661

Query: 234 EDAEEIFRKTVEKDIVVYN----AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSA 289
           E++ ++F +  ++  V +N    A +     ++ + +   EVH  ++KN    +  + S 
Sbjct: 662 EESLKLFVRMADEK-VGWNEHTFASVLSACSNLRSLKLGKEVHAYVLKNRLIANPFICSG 720

Query: 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF----------- 338
           LVD+Y KC  +  A+ V   ++ +NV++ TSMI GY   GN  +A +LF           
Sbjct: 721 LVDVYCKCNNMRYAKSVNSELRMQNVYSITSMIVGYSSQGNMAEARKLFDSLDEKNSAVW 780

Query: 339 -------CMMQEC-------------CVQPNYVTFLGALSACGHAGLVDKGREIFESMER 378
                    +Q+C                P+ +  +  + AC     +  G++I   M R
Sbjct: 781 TALFFGYVKLQQCEAVFELLSEYRKEAKVPDVLILISIIGACAIQAALVPGKQIHSYMLR 840

Query: 379 DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
              +K   +  + +VD+  + GS+  A +   E+ +K
Sbjct: 841 A-GIKLDTKLTSSLVDMYSKCGSIIYAERIFREVTDK 876



 Score = 60.1 bits (144), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 45/73 (61%)

Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
           +  L  H Q IK+ F   + + + L+  YAK G ++DA+++FD M ++NVF+W ++I  Y
Sbjct: 428 KHGLLCHLQGIKSGFTPTIFMSNQLITFYAKHGLLNDAQKLFDEMPERNVFSWNAIIAAY 487

Query: 326 GKNGNPNQALELF 338
            K+ N  QA  LF
Sbjct: 488 VKSHNLRQARALF 500


>gi|449484072|ref|XP_004156776.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Cucumis sativus]
          Length = 754

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 145/444 (32%), Positives = 248/444 (55%), Gaps = 13/444 (2%)

Query: 52  LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL 111
           L  + NSD  F G   HA I K     +      LL ++ K G L  A ++F     ++ 
Sbjct: 318 LMGFGNSDRIFEGKAFHARILKQCCALSGITHNALLSMYCKFGHLGTANKIFHSF-HKSS 376

Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR 171
             ++ MI GY   GQ E+ +S +R+++  G  PD    S++   S+C +       N+GR
Sbjct: 377 EDWSTMILGYSNMGQKEKCISFLREMLLLGREPD--LNSLVSVISSCSQVGAI---NIGR 431

Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
            +H   +K  +  +  +  +L+D Y K G  +    +F   L+++VI   ++IS +   G
Sbjct: 432 SIHCYAIKNSIIENVSVANSLMDMYGKSGHVTATWRIFHRTLQRDVISWNTLISSYKQSG 491

Query: 232 FVEDAEEIFRKTVEKDIV---VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGS 288
            + +A  +F K V++ +    V   ++      + +  +  ++H  + +N F  ++ + +
Sbjct: 492 ILAEAIILFDKMVKEKVYPNKVTCIIVLSACAHLASLDEGEKIHQYIKENGFESNITIRT 551

Query: 289 ALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348
           AL+DMYAKCG+++ +R++F+  ++++V  W  MI  YG +G+   A+E+F +M+E  ++P
Sbjct: 552 ALIDMYAKCGELETSRKLFNSTEERDVILWNVMISNYGMHGHVESAMEIFQLMEESNIKP 611

Query: 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKF 408
           N  TFL  LSAC H G V +GR +F+ M++ Y ++P ++HYA ++DLLGR+GSLE A   
Sbjct: 612 NAQTFLSLLSACNHTGHVLEGRHLFDRMQK-YGIEPSLKHYASIIDLLGRSGSLEAAEAL 670

Query: 409 VLEMPEKPNSDVWAALLSSCRLHDDVEMA-NIAANEIFKLNANDRPGAYVALSNTLAAAG 467
           VL MP  P+  VW +LLS+C++H++ E+   +A   I     ND  G Y+ LS+  +  G
Sbjct: 671 VLSMPITPDGTVWGSLLSACKIHNEFEVGVRLARYAIESDPKND--GYYIILSDLYSCLG 728

Query: 468 KWDSVTELREKMKLRGVLKDTGCS 491
           +WD V ++R+ MK RGV K  G S
Sbjct: 729 RWDEVEKVRDMMKKRGVEKRAGWS 752



 Score =  133 bits (335), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 119/447 (26%), Positives = 210/447 (46%), Gaps = 23/447 (5%)

Query: 47  SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
           ++ S  Q  ++ D    G  +H    K G      +   +L ++ +CG+ + A + F +L
Sbjct: 212 TIGSGFQACVDLDALVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEAYRCFCKL 271

Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
            Q+ L ++  +IA + K G + E L L  ++ +S   PD    S +L       S+    
Sbjct: 272 DQKDLISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFG--NSDRIFE 329

Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
              G+  HA+ILK       + + AL+  Y K G    A  +F    + +   ST MI G
Sbjct: 330 ---GKAFHARILKQCCALSGITHNALLSMYCKFGHLGTANKIFHSFHKSSEDWST-MILG 385

Query: 227 FMSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282
           + + G  E      R+ +    E D+    ++I   S  +        +HC  IKN   E
Sbjct: 386 YSNMGQKEKCISFLREMLLLGREPDLNSLVSVISSCS-QVGAINIGRSIHCYAIKNSIIE 444

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           +V + ++L+DMY K G +    R+F    Q++V +W ++I  Y ++G   +A+ LF  M 
Sbjct: 445 NVSVANSLMDMYGKSGHVTATWRIFHRTLQRDVISWNTLISSYKQSGILAEAIILFDKMV 504

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
           +  V PN VT +  LSAC H   +D+G +I + ++ +   +  +     ++D+  + G L
Sbjct: 505 KEKVYPNKVTCIIVLSACAHLASLDEGEKIHQYIKEN-GFESNITIRTALIDMYAKCGEL 563

Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL--NANDRPGAYVALS 460
           E + K +    E+ +  +W  ++S+  +H  VE    +A EIF+L   +N +P A   LS
Sbjct: 564 ETSRK-LFNSTEERDVILWNVMISNYGMHGHVE----SAMEIFQLMEESNIKPNAQTFLS 618

Query: 461 NTLAAAGKWDSVTELR---EKMKLRGV 484
             L+A      V E R   ++M+  G+
Sbjct: 619 -LLSACNHTGHVLEGRHLFDRMQKYGI 644



 Score = 82.4 bits (202), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 81/370 (21%), Positives = 163/370 (44%), Gaps = 26/370 (7%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
            H+ I  TG   N   + KL+  +       ++  +F  +  + +  +N +I  +  NG 
Sbjct: 29  FHSLIITTGNSNNVFFATKLMAFYAYHRKPAFSTHLFRLIHSKDIFLWNSIIQSHFSNGD 88

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV-KAD 185
            + +     ++ +S   P+ +T  M++  STC      +  N G  +H    K  +   +
Sbjct: 89  YQRAFDFYLQMRASSSLPNQFTVPMVV--STCAE---LMMFNHGMNIHGLTSKLGLFVGN 143

Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE------I 239
             + ++ +  Y K G    A I+F  +  K+V+  T++I G+     V++ E       +
Sbjct: 144 SAIGSSFIYMYSKCGHVESASIMFSEITVKDVVTWTALIVGY-----VQNNESGRGLKCL 198

Query: 240 FRKTVEKDIVVYNAMIEGYS--ISIETARKALEVHCQLIKNVF--FEDVKLGSALVDMYA 295
           F          Y  +  G+   + ++   +   +H   +KN F  FE VK  S ++ MY+
Sbjct: 199 FEMHRIGGTPNYKTIGSGFQACVDLDALVEGKCLHGLALKNGFLCFEVVK--STILSMYS 256

Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
           +CG  ++A R F  + QK++ +WTS+I  + K G  ++ L LF  MQ   + P+ +    
Sbjct: 257 RCGSPEEAYRCFCKLDQKDLISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISC 316

Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
            L   G++  + +G+     + +       + H A ++ +  + G L  A K +     K
Sbjct: 317 MLMGFGNSDRIFEGKAFHARILKQCCALSGITHNA-LLSMYCKFGHLGTANK-IFHSFHK 374

Query: 416 PNSDVWAALL 425
            + D W+ ++
Sbjct: 375 SSED-WSTMI 383



 Score = 62.4 bits (150), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 66/339 (19%), Positives = 140/339 (41%), Gaps = 38/339 (11%)

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLY-TALVDSYVKGGKTSYARIVFDMM 212
           K   CC+ +    + L R     ++     +++V + T L+  Y    K +++  +F ++
Sbjct: 11  KRFVCCQGD--FDKLLIRFWFHSLIITTGNSNNVFFATKLMAFYAYHRKPAFSTHLFRLI 68

Query: 213 LEKNVICSTSMISGFMSQGFVEDAEEIFRK-----TVEKDIVVYNAMIEGYSISIETARK 267
             K++    S+I    S G  + A + + +     ++     V   M+      +     
Sbjct: 69  HSKDIFLWNSIIQSHFSNGDYQRAFDFYLQMRASSSLPNQFTV--PMVVSTCAELMMFNH 126

Query: 268 ALEVHCQLIK-NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
            + +H    K  +F  +  +GS+ + MY+KCG ++ A  +F  +  K+V TWT++I GY 
Sbjct: 127 GMNIHGLTSKLGLFVGNSAIGSSFIYMYSKCGHVESASIMFSEITVKDVVTWTALIVGYV 186

Query: 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACG-----------HAGLVDKGREIFES 375
           +N    + L+    M      PNY T      AC            H   +  G   FE 
Sbjct: 187 QNNESGRGLKCLFEMHRIGGTPNYKTIGSGFQACVDLDALVEGKCLHGLALKNGFLCFEV 246

Query: 376 MERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVE 435
           ++            + ++ +  R GS E+A +   ++ +K +   W ++++   +H    
Sbjct: 247 VK------------STILSMYSRCGSPEEAYRCFCKLDQK-DLISWTSIIA---VHSKFG 290

Query: 436 MANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
           + +   +  +++ A++     + +S  L   G  D + E
Sbjct: 291 LMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSDRIFE 329


>gi|297809863|ref|XP_002872815.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318652|gb|EFH49074.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 776

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 143/429 (33%), Positives = 232/429 (54%), Gaps = 48/429 (11%)

Query: 99  AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
           A Q FD +  R + ++N +I GY +NG+++E+    R+L       D +T++ ++     
Sbjct: 233 ARQFFDSMKVRDVVSWNTIITGYAQNGEIDEA----RQLFDESPVHDVFTWTAMVSGYIQ 288

Query: 159 CRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI 218
            R          RM          + ++V + A++  YV+G +   A+ +FD+M  +NV 
Sbjct: 289 NRMVEEARELFDRMP---------ERNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVS 339

Query: 219 CSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARK----------- 267
              +MI+G+   G + +A+ +F K  ++D V + AMI GYS S  +              
Sbjct: 340 TWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRLFVLMEREG 399

Query: 268 -------------------ALEV----HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDAR 304
                              ALE+    H +L+K  +     +G+AL+ MY KCG I++A 
Sbjct: 400 GRLNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEAN 459

Query: 305 RVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG 364
            +F  M  K++ +W +MI GY ++G   +AL  F  M+   ++P+  T +  LSAC H G
Sbjct: 460 DLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVLSACSHTG 519

Query: 365 LVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAAL 424
           LVDKGR+ F +M +DY ++P  +HYACMVDLLGRAG LE+A   +  MP +P++ +W  L
Sbjct: 520 LVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWGTL 579

Query: 425 LSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGV 484
           L + R+H + E+A  AA++IF +   +  G YV LSN  A++G+W  V +LR +M+ +GV
Sbjct: 580 LGASRVHGNTELAETAADKIFAMEPEN-SGMYVLLSNLYASSGRWGDVGKLRVRMRDKGV 638

Query: 485 LKDTGCSWV 493
            K  G SW+
Sbjct: 639 KKVPGYSWI 647



 Score =  124 bits (311), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 126/504 (25%), Positives = 221/504 (43%), Gaps = 101/504 (20%)

Query: 9   SSVFSSTHNRHYTLVPPNQTFP-PKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKI 67
           +S F S+ +   T +  +QT P PK  + D             A+  Y+ +      L++
Sbjct: 29  ASNFHSSKSSTQTQIQKSQTKPLPKSGDSD-------IKEWNVAISSYMRTGRCSEALRV 81

Query: 68  HAHITK-TGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
              + + + V  N  IS      +L+ G  + A  +FDE+P+R L ++N MI GY++N  
Sbjct: 82  FKRMPRWSSVSYNAMISG-----YLRNGEFELARMLFDEMPERDLVSWNVMIKGYVRNRN 136

Query: 127 VEESLSLVRKL----------VSSGERPDG-----------------YTFSMILKA---- 155
           + ++  L  ++          + SG   +G                  +++ +L A    
Sbjct: 137 LGKARELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDRMPEKNDVSWNALLSAYVQN 196

Query: 156 ----STCC----RSNVPLPRN---LG------RMVHAQILKCDVKADDVL-YTALVDSYV 197
                 C     R N  L      LG      ++V A+     +K  DV+ +  ++  Y 
Sbjct: 197 SKLEEACVLFGSRENWALVSWNCLLGGFVKKKKIVEARQFFDSMKVRDVVSWNTIITGYA 256

Query: 198 KGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEG 257
           + G+   AR +FD     +V   T+M+SG++    VE+A E+F +  E++ V +NAM+ G
Sbjct: 257 QNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMVEEARELFDRMPERNEVSWNAMLAG 316

Query: 258 YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT 317
           Y   ++  R  +E+  +L   +   +V   + ++  YA+CGKI +A+ +FD M +++  +
Sbjct: 317 Y---VQGER--VEMAKELFDVMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVS 371

Query: 318 WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG-----------HAGLV 366
           W +MI GY ++G+  +AL LF +M+    + N  +F  ALS C            H  LV
Sbjct: 372 WAAMIAGYSQSGHSYEALRLFVLMEREGGRLNRSSFSSALSTCADVVALELGKQLHGRLV 431

Query: 367 DKGRE------------------IFESMERDYSMKPK-MEHYACMVDLLGRAGSLEQALK 407
             G E                  I E+ +    M  K +  +  M+    R G  E+AL+
Sbjct: 432 KGGYETGCFVGNALLLMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALR 491

Query: 408 FVLEMPE---KPNSDVWAALLSSC 428
           F   M     KP+     A+LS+C
Sbjct: 492 FFESMKREGLKPDDATMVAVLSAC 515



 Score =  115 bits (287), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 103/397 (25%), Positives = 186/397 (46%), Gaps = 49/397 (12%)

Query: 46  TSLPSALQHY--INSDTPFYGLK--IHAHITKTGVKP----------NTNISIKLLILHL 91
           TSL    + Y   NS + F+  K      I K+  KP            N++I     ++
Sbjct: 14  TSLNGLKRRYNNANSASNFHSSKSSTQTQIQKSQTKPLPKSGDSDIKEWNVAISS---YM 70

Query: 92  KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
           + G    A ++F  +P+ +  +YN MI+GYL+NG+ E    L R L       D  ++++
Sbjct: 71  RTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFE----LARMLFDEMPERDLVSWNV 126

Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
           ++K            RNLG+    ++ +   + D   +  ++  Y + G    AR VFD 
Sbjct: 127 MIKGYV-------RNRNLGKA--RELFERMPERDVCSWNTILSGYAQNGCVDDARRVFDR 177

Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV 271
           M EKN +   +++S ++    +E+A  +F       +V +N ++ G+       +K +  
Sbjct: 178 MPEKNDVSWNALLSAYVQNSKLEEACVLFGSRENWALVSWNCLLGGF-----VKKKKIVE 232

Query: 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNP 331
             Q   ++   DV   + ++  YA+ G+ID+AR++FD     +VFTWT+M+ GY +N   
Sbjct: 233 ARQFFDSMKVRDVVSWNTIITGYAQNGEIDEARQLFDESPVHDVFTWTAMVSGYIQNRMV 292

Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME-RDYSMKPKMEHYA 390
            +A ELF  M E     N V++   L+       V+  +E+F+ M  R+ S       + 
Sbjct: 293 EEARELFDRMPE----RNEVSWNAMLAGYVQGERVEMAKELFDVMPCRNVST------WN 342

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEK-PNSDVWAALLS 426
            M+    + G + +A     +MP++ P S  WAA+++
Sbjct: 343 TMITGYAQCGKISEAKNLFDKMPKRDPVS--WAAMIA 377



 Score = 75.9 bits (185), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 73/306 (23%), Positives = 136/306 (44%), Gaps = 18/306 (5%)

Query: 76  VKPNTNISI--KLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSL 133
           V P  N+S    ++  + +CG +  A  +FD++P+R   ++  MIAGY ++G   E+L L
Sbjct: 332 VMPCRNVSTWNTMITGYAQCGKISEAKNLFDKMPKRDPVSWAAMIAGYSQSGHSYEALRL 391

Query: 134 VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALV 193
              +   G R +  +FS  L   + C   V L   LG+ +H +++K   +    +  AL+
Sbjct: 392 FVLMEREGGRLNRSSFSSAL---STCADVVAL--ELGKQLHGRLVKGGYETGCFVGNALL 446

Query: 194 DSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIV 249
             Y K G    A  +F  M  K+++   +MI+G+   GF E+A   F    R+ ++ D  
Sbjct: 447 LMYCKCGSIEEANDLFKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDA 506

Query: 250 VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309
              A++   S +    +     H          + +  + +VD+  + G +++A  +  +
Sbjct: 507 TMVAVLSACSHTGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKN 566

Query: 310 MQ-QKNVFTWTSMIDGYGKNGN----PNQALELFCMMQECCVQPNYVTFLGALSACGHAG 364
           M  + +   W +++     +GN       A ++F M  E      YV      ++ G  G
Sbjct: 567 MPFEPDAAIWGTLLGASRVHGNTELAETAADKIFAMEPENSGM--YVLLSNLYASSGRWG 624

Query: 365 LVDKGR 370
            V K R
Sbjct: 625 DVGKLR 630



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 49/196 (25%), Positives = 87/196 (44%), Gaps = 5/196 (2%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L  +S  SAL    +      G ++H  + K G +    +   LL+++ KCG+++ A  +
Sbjct: 402 LNRSSFSSALSTCADVVALELGKQLHGRLVKGGYETGCFVGNALLLMYCKCGSIEEANDL 461

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           F E+  + + ++N MIAGY ++G  EE+L     +   G +PD  T   +L  S C  S+
Sbjct: 462 FKEMAGKDIVSWNTMIAGYSRHGFGEEALRFFESMKREGLKPDDATMVAVL--SAC--SH 517

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR-IVFDMMLEKNVICST 221
             L     +  H       V+ +   Y  +VD   + G    A  ++ +M  E +     
Sbjct: 518 TGLVDKGRQYFHTMTQDYGVRPNSQHYACMVDLLGRAGLLEEAHNLMKNMPFEPDAAIWG 577

Query: 222 SMISGFMSQGFVEDAE 237
           +++      G  E AE
Sbjct: 578 TLLGASRVHGNTELAE 593



 Score = 50.4 bits (119), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/208 (28%), Positives = 93/208 (44%), Gaps = 24/208 (11%)

Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
           D+K  +  +  Y + G+  +A RVF  M + +  ++ +MI GY +NG    A  LF  M 
Sbjct: 58  DIKEWNVAISSYMRTGRCSEALRVFKRMPRWSSVSYNAMISGYLRNGEFELARMLFDEMP 117

Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESM-ERDY-SMKPKMEHYACMVDLLGRAG 400
           E     + V++   +        + K RE+FE M ERD  S    +  YA       + G
Sbjct: 118 E----RDLVSWNVMIKGYVRNRNLGKARELFERMPERDVCSWNTILSGYA-------QNG 166

Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
            ++ A +    MPEK N   W ALLS+   +  +E A +    +F    N    A V+ +
Sbjct: 167 CVDDARRVFDRMPEK-NDVSWNALLSAYVQNSKLEEACV----LFGSREN---WALVSWN 218

Query: 461 NTLAAAGKWDSVTELRE---KMKLRGVL 485
             L    K   + E R+    MK+R V+
Sbjct: 219 CLLGGFVKKKKIVEARQFFDSMKVRDVV 246


>gi|147818972|emb|CAN67116.1| hypothetical protein VITISV_026465 [Vitis vinifera]
          Length = 1817

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 142/434 (32%), Positives = 241/434 (55%), Gaps = 9/434 (2%)

Query: 64   GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
            G++IHA I +TG + N  ++  L+ L+ KC A+  A ++FD + +    ++  +I+G+ K
Sbjct: 1335 GVQIHARIIQTGFEDNLFLNSALVDLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSK 1394

Query: 124  NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            NG+ +E++   ++++ S  +P+  T+   + A T     +    +   ++HA ++K    
Sbjct: 1395 NGRGKEAILFFKEMLGSQIKPNCVTYVSXISACT----GLETIFDQCALLHAHVVKLGFG 1450

Query: 184  ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
                + + L+D Y K G+   A ++F   +E++ I   SMISG+      E+A ++F + 
Sbjct: 1451 VKTFVVSCLIDCYSKCGRIDQAVLLFGTTIERDNILFNSMISGYSQNLXGEEALKLFVZM 1510

Query: 244  VEKDIVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
                +   +     I     S+   ++  +VH  + K     +V + SAL+DMY+KCG I
Sbjct: 1511 RNNGLXPTDHTLTSILNACGSLTILQQGRQVHSLVAKMGSESNVFVVSALLDMYSKCGSI 1570

Query: 301  DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF-CMMQECCVQPNYVTFLGALSA 359
            D+AR VF    +KN   WTSMI GY ++G   + L LF  ++ E    P+++ F   L+A
Sbjct: 1571 DEARCVFXQAVEKNTVLWTSMITGYAQSGRGPEGLGLFERLVXEEGFTPDHICFTAVLTA 1630

Query: 360  CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
            C HAG +DKG + F  M RDY + P ++ YAC+VDL  R G L +A + +   P +PNS 
Sbjct: 1631 CNHAGFLDKGIDYFNQMRRDYGLVPDLDQYACLVDLYVRNGHLRKAKELMEAXPXEPNSV 1690

Query: 420  VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
            +W + LSSC+L+ + E+   AA+++FK+        YVA+++  A AG W  V E+R+ M
Sbjct: 1691 MWGSFLSSCKLYGEAELGREAADKLFKMEPCS-TAPYVAMASIYAQAGLWSEVVEIRKLM 1749

Query: 480  KLRGVLKDTGCSWV 493
            K +G+ K  G SWV
Sbjct: 1750 KQKGLRKSAGWSWV 1763



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 81/308 (26%), Positives = 154/308 (50%), Gaps = 11/308 (3%)

Query: 123  KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
            K+  V E+L    ++ +SG +P  +     L  ++C +    L   LG  +HA+I++   
Sbjct: 1293 KHANVREALESFXRMNTSGTKPTKFILCTAL--NSCAK---LLNWGLGVQIHARIIQTGF 1347

Query: 183  KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EE 238
            + +  L +ALVD Y K      A+ VFD M + + +  TS+ISGF   G  ++A    +E
Sbjct: 1348 EDNLFLNSALVDLYAKCDAIVDAKRVFDGMEKHDQVSWTSIISGFSKNGRGKEAILFFKE 1407

Query: 239  IFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
            +    ++ + V Y + I   +       +   +H  ++K  F     + S L+D Y+KCG
Sbjct: 1408 MLGSQIKPNCVTYVSXISACTGLETIFDQCALLHAHVVKLGFGVKTFVVSCLIDCYSKCG 1467

Query: 299  KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            +ID A  +F    +++   + SMI GY +N    +AL+LF  M+   + P   T    L+
Sbjct: 1468 RIDQAVLLFGTTIERDNILFNSMISGYSQNLXGEEALKLFVZMRNNGLXPTDHTLTSILN 1527

Query: 359  ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
            ACG   ++ +GR++  S+      +  +   + ++D+  + GS+++A     +  EK N+
Sbjct: 1528 ACGSLTILQQGRQV-HSLVAKMGSESNVFVVSALLDMYSKCGSIDEARCVFXQAVEK-NT 1585

Query: 419  DVWAALLS 426
             +W ++++
Sbjct: 1586 VLWTSMIT 1593


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 142/451 (31%), Positives = 237/451 (52%), Gaps = 22/451 (4%)

Query: 64  GLKIHAHITKTGVKPNTN----------ISIKLLILHLKCGALKYAGQMFDELPQRTLSA 113
           G  +HA+  +  +  N N          +   LL ++ KCG+L YA ++FD +P R    
Sbjct: 247 GTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVT 306

Query: 114 YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR-NLGRM 172
           ++ +I G++   ++ ++  L + +++      G  F      ++  R+   L    +G  
Sbjct: 307 WSALIGGFVLCSRMTQAFLLFKAMLA-----QGLCFLSPTSIASALRACASLDHLRMGEQ 361

Query: 173 VHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGF 232
           +HA + K  V AD     +L+  Y K G    A  +FD M  K+ +  ++++SG++  G 
Sbjct: 362 LHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGR 421

Query: 233 VEDAEEIFRK----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGS 288
            E+A  +F+K     VE D     ++I   S  +   +     H  +I      +  + +
Sbjct: 422 AEEAFLVFKKMQACNVEPDAATMVSLIPACS-HLAALQHGRCSHGSVIIRGLASETSICN 480

Query: 289 ALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348
           AL+DMYAKCG+ID +R+VF+ M  +++ +W +MI GYG +G   +A  LF  M      P
Sbjct: 481 ALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPP 540

Query: 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKF 408
           + VTF+  LSAC H+GLV +G+  F  M   Y + P+MEHY CMVDLL R G L++A +F
Sbjct: 541 DGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEF 600

Query: 409 VLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGK 468
           +  MP + +  VW ALL +CR++ ++++    +  I +L   +  G +V LSN  +AAG+
Sbjct: 601 IQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGP-EGTGNFVLLSNIYSAAGR 659

Query: 469 WDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           +D   E+R   K++G  K  GCSW+     L
Sbjct: 660 FDEAAEVRIIQKVQGFKKSPGCSWIEINGSL 690



 Score =  142 bits (358), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/372 (26%), Positives = 174/372 (46%), Gaps = 50/372 (13%)

Query: 20  YTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPN 79
           + + P N TFP  L+   +L++            H+        G  IH H    G++ +
Sbjct: 119 HRVAPNNYTFPFALKACSALAD------------HHC-------GRAIHRHAIHAGLQAD 159

Query: 80  TNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLS--LVRKL 137
             +S  LL +++KC  L  A  +F  +P R L A+N M+AGY  +G    +++  L  ++
Sbjct: 160 LFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQM 219

Query: 138 VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRM-----VHAQILKCDVKADD------ 186
                RP+  T   +L          PL    G +     VHA  ++  + ++       
Sbjct: 220 QMHRLRPNASTLVALL----------PLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKL 269

Query: 187 ----VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
               +L TAL+D Y K G   YAR VFD M  +N +  +++I GF+    +  A  +F+ 
Sbjct: 270 TDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKA 329

Query: 243 TVEKDIVVYNAMIEGYSI----SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
            + + +   +      ++    S++  R   ++H  L K+    D+  G++L+ MYAK G
Sbjct: 330 MLAQGLCFLSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAG 389

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            ID A  +FD M  K+  ++++++ GY +NG   +A  +F  MQ C V+P+  T +  + 
Sbjct: 390 LIDQAIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIP 449

Query: 359 ACGHAGLVDKGR 370
           AC H   +  GR
Sbjct: 450 ACSHLAALQHGR 461



 Score =  119 bits (297), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 163/358 (45%), Gaps = 31/358 (8%)

Query: 90  HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG--QVEESLSLVRKLVSSGERPDGY 147
           H+  G L  A  +FD++P   +  YN +I  Y  +      + L L R+++     P+ Y
Sbjct: 67  HIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNNY 126

Query: 148 TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARI 207
           TF   LKA +    +     + GR +H   +   ++AD  + TAL+D YVK      A  
Sbjct: 127 TFPFALKACSALADH-----HCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAH 181

Query: 208 VFDMMLEKNVICSTSMISGFMSQGFVEDA--------EEIFRKTVEKDIVV--------Y 251
           +F  M  ++++   +M++G+   G    A         ++ R       +V         
Sbjct: 182 IFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQ 241

Query: 252 NAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311
            A+ +G S+     R  L  + +  K+   + V LG+AL+DMYAKCG +  ARRVFD M 
Sbjct: 242 GALAQGTSVHAYRIRACLHSN-RNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMP 300

Query: 312 QKNVFTWTSMIDGYGKNGNPNQALELFCMMQE---CCVQPNYVTFLGALSACGHAGLVDK 368
            +N  TW+++I G+       QA  LF  M     C + P  +    AL AC     +  
Sbjct: 301 ARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTSIA--SALRACASLDHLRM 358

Query: 369 GREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
           G ++   + +   +   +     ++ +  +AG ++QA+    EM  K ++  ++AL+S
Sbjct: 359 GEQLHALLAKS-GVHADLTAGNSLLSMYAKAGLIDQAIALFDEMAVK-DTVSYSALVS 414



 Score = 96.7 bits (239), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 80/337 (23%), Positives = 155/337 (45%), Gaps = 15/337 (4%)

Query: 43  LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
           L+ TS+ SAL+   + D    G ++HA + K+GV  +      LL ++ K G +  A  +
Sbjct: 338 LSPTSIASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIAL 397

Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
           FDE+  +   +Y+ +++GY++NG+ EE+  + +K+ +    PD  T   ++ A   C   
Sbjct: 398 FDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPA---CSHL 454

Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
             L    GR  H  ++   + ++  +  AL+D Y K G+   +R VF+MM  ++++   +
Sbjct: 455 AALQH--GRCSHGSVIIRGLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNT 512

Query: 223 MISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKN 278
           MI+G+   G  ++A  +F +        D V +  ++   S S          H      
Sbjct: 513 MIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMRHGY 572

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQALEL 337
                ++    +VD+ ++ G +D+A      M  + +V  W +++       N +   ++
Sbjct: 573 GLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKV 632

Query: 338 FCMMQECCVQ--PNYVTFLGALSACGHAGLVDKGREI 372
             M+QE   +   N+V      SA   AG  D+  E+
Sbjct: 633 SRMIQELGPEGTGNFVLLSNIYSA---AGRFDEAAEV 666


>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 817

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 147/480 (30%), Positives = 271/480 (56%), Gaps = 28/480 (5%)

Query: 27  QTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKL 86
           Q F   +++ D+  + +T  S  SA  H    +      ++HA + K        +   L
Sbjct: 299 QLFFQAVESEDAAIDEVTLLSAISAASHLQKFEL---AEQLHAFVIKNVAVTQVCVMNAL 355

Query: 87  LILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDG 146
           + ++ +C ++  + ++FD +P++ + ++N MI+ +++NG  +E+L L  ++       D 
Sbjct: 356 IAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDS 415

Query: 147 YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR 206
            T + +L A++  R+      ++G+  H  +L+  ++ +  + + L+D Y K G    A+
Sbjct: 416 VTVTALLSAASDLRN-----PDIGKQTHGYLLRNGIQFEG-MDSYLIDMYAKSGLIEAAQ 469

Query: 207 IVFDMML--EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI---VVYNAMI------ 255
            VF+     E++     SM+SG+   G V+ A  I R+ +++ +   VV  A I      
Sbjct: 470 NVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNP 529

Query: 256 EGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
            GY   I+  +   ++H   I+N   ++V + +AL+DMY+K G I  A  VF    +K++
Sbjct: 530 SGY---IDWGK---QLHGFSIRNDLDQNVFVATALIDMYSKSGSIAHAENVFSKANEKSI 583

Query: 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES 375
            T+++MI GYG++G    AL +F  MQ+  +QP+ VT +  LSAC +AGLVD+G +IFES
Sbjct: 584 VTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFES 643

Query: 376 MERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS-DVWAALLSSCRLHDDV 434
           M   Y+++P  EH+ C+ D+LGRAG +++A +FV+ + EK N  ++W +LL++CR+H   
Sbjct: 644 MRTVYNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQF 703

Query: 435 EMANIAANEIFKLNA-NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
           E+  + A ++ ++   N + G +V LSN  A    W++V  +R++M+ RG+ K+TG SW+
Sbjct: 704 ELGKLVAKKLLEMEKINGKTGYHVLLSNIYAEERNWENVDIVRKQMRERGLKKETGSSWI 763



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 186/383 (48%), Gaps = 27/383 (7%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM-------------FDELPQRT 110
           G  +HAH  +  + P+  +   LL ++  C +    G+M             FD + +RT
Sbjct: 115 GKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKVFDTMRKRT 174

Query: 111 LSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLG 170
           + A+N +IA Y++  +  E++     ++  G +P   +F  +  A     S++   +N  
Sbjct: 175 VVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPA----FSSLGDFKN-A 229

Query: 171 RMVHAQILKCDVKADDVLY--TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM 228
            +VH  ++K   +  + LY  ++ +  Y + G   +A+ VFD  LE+N     +MIS F+
Sbjct: 230 NVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMISAFV 289

Query: 229 SQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFEDV 284
              F  +  ++F + VE +    + +    +IS  +  +  E    +H  +IKNV    V
Sbjct: 290 QNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVAVTQV 349

Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
            + +AL+ MY++C  ID + ++FD+M +K+V +W +MI  + +NG  ++AL LF  M++ 
Sbjct: 350 CVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQ 409

Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQ 404
            +  + VT    LSA       D G++    + R+      M+ Y  ++D+  ++G +E 
Sbjct: 410 DLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQFEGMDSY--LIDMYAKSGLIEA 467

Query: 405 ALK-FVLEMPEKPNSDVWAALLS 426
           A   F      + +   W +++S
Sbjct: 468 AQNVFEKSFSHERDQATWNSMMS 490



 Score =  102 bits (253), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 103/408 (25%), Positives = 190/408 (46%), Gaps = 46/408 (11%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           +AT LP        S +P + L +H H T   + P     +  L    + G L  A Q+F
Sbjct: 4   SATPLPL-------SQSPSH-LPLHTHSTNPKI-PTIRYRLSRLC---QEGQLHLARQLF 51

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE--RPDGYTFSMILKASTCCRS 161
           D LP+ +   +N +I G + N   +E+L     + SS    + D YT+S +LKA    R+
Sbjct: 52  DALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKACADTRN 111

Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY------------VKG-GKTSYARIV 208
            V     +G+ VHA  L+C +    ++Y +L++ Y            V G  +    R V
Sbjct: 112 LV-----VGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKV 166

Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIET 264
           FD M ++ V+   ++I+ ++      +A + F   ++  I    V +  +   +S S+  
Sbjct: 167 FDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFS-SLGD 225

Query: 265 ARKALEVHCQLIK--NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
            + A  VH  L+K  + +  D+ + S+ + MYA+ G ++ A++VFD+  ++N   W +MI
Sbjct: 226 FKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMI 285

Query: 323 DGYGKNGNPNQALELFCMMQEC-CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
             + +N    + ++LF    E      + VT L A+SA  H    +   ++   + ++ +
Sbjct: 286 SAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLSAISAASHLQKFELAEQLHAFVIKNVA 345

Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV--WAALLSS 427
           +       A ++ +  R  S++ + K    MPEK   DV  W  ++S+
Sbjct: 346 VTQVCVMNA-LIAMYSRCNSIDTSFKIFDNMPEK---DVVSWNTMISA 389


>gi|449442481|ref|XP_004139010.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
 gi|449505311|ref|XP_004162432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g04840-like [Cucumis sativus]
          Length = 679

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 153/503 (30%), Positives = 247/503 (49%), Gaps = 75/503 (14%)

Query: 66  KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
           +IH  + +  V  ++ +  + +       ++ YA  +F     +    +N +I G  +N 
Sbjct: 60  QIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAENS 119

Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
           + E S+S    ++     PD  TF  +LK++    +       +GR +H  ILK  ++ D
Sbjct: 120 RFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNG-----GVGRALHCGILKFGLEFD 174

Query: 186 DVLYTALVDSYVK-----------------------------------GGKTSYARIVFD 210
             +  +LVD YVK                                    G    A  +FD
Sbjct: 175 SFVRVSLVDMYVKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFD 234

Query: 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS----------- 259
            M +K+     S+I+GFM  G +  A+E+F K  EK++V +  M+ G+S           
Sbjct: 235 SMPKKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALET 294

Query: 260 -------------ISIETARKA----------LEVHCQLIKNVFFEDVKLGSALVDMYAK 296
                         +I +A  A          L +H  L  N F  ++ +G+ALVDMYAK
Sbjct: 295 FFCMLEEGARPNDYTIVSALSACAKIGALDAGLRIHNYLSGNGFKLNLVIGTALVDMYAK 354

Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           CG I+ A +VF   ++K +  W+ MI G+  +G+  +AL+ F  M+    +P+ V FL  
Sbjct: 355 CGNIEHAEKVFHETKEKGLLIWSVMIWGWAIHGHFRKALQYFEWMKFTGTKPDSVVFLAV 414

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           L+AC H+G V++G + F++M R Y ++P M+HY  +VD+LGRAG L++ALKF+  MP  P
Sbjct: 415 LNACSHSGQVNEGLKFFDNMRRGYLIEPSMKHYTLVVDMLGRAGRLDEALKFIRAMPITP 474

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
           +  VW AL  +CR H +VEMA +A+ ++ +L     PG+YV LSN  A+ G+WD    +R
Sbjct: 475 DFVVWGALFCACRTHKNVEMAELASKKLLQLEPK-HPGSYVFLSNAYASVGRWDDAERVR 533

Query: 477 EKMKLRGVLKDTGCSWVGTESGL 499
             M+  G  KD G S++  +  L
Sbjct: 534 VSMRDHGAHKDPGWSFIEVDHKL 556



 Score = 75.5 bits (184), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 86/388 (22%), Positives = 155/388 (39%), Gaps = 80/388 (20%)

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF--- 227
           R +H Q+ +C+V +   + T  + S        YA  +F     KN     ++I G    
Sbjct: 59  RQIHGQLYRCNVFSSSRVVTQFISSCSSLNSVDYAISIFQRFELKNSYLFNALIRGLAEN 118

Query: 228 ----------------------------------MSQGFVEDAEE--IFRKTVEKDIVVY 251
                                             +S G V  A    I +  +E D  V 
Sbjct: 119 SRFESSISFFVLMLKWKISPDRLTFPFVLKSAAALSNGGVGRALHCGILKFGLEFDSFVR 178

Query: 252 NAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311
            ++++ Y + +E    AL+V  +  ++V    V + + L+  Y + G +  A  +FD M 
Sbjct: 179 VSLVDMY-VKVEELGSALKVFDESPESVKNGSVLIWNVLIHGYCRMGDLVKATELFDSMP 237

Query: 312 QKNVFTWTS-------------------------------MIDGYGKNGNPNQALE-LFC 339
           +K+  +W S                               M++G+ +NG+P +ALE  FC
Sbjct: 238 KKDTGSWNSLINGFMKMGDMGRAKELFVKMPEKNVVSWTTMVNGFSQNGDPEKALETFFC 297

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
           M++E   +PN  T + ALSAC   G +D G  I   +  +   K  +     +VD+  + 
Sbjct: 298 MLEEGA-RPNDYTIVSALSACAKIGALDAGLRIHNYLSGN-GFKLNLVIGTALVDMYAKC 355

Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA--YV 457
           G++E A K   E  EK    +W+ ++    +H     A +   E  K     +P +  ++
Sbjct: 356 GNIEHAEKVFHETKEK-GLLIWSVMIWGWAIHGHFRKA-LQYFEWMKFTGT-KPDSVVFL 412

Query: 458 ALSNTLAAAGKWDSVTELREKMKLRGVL 485
           A+ N  + +G+ +   +  + M+ RG L
Sbjct: 413 AVLNACSHSGQVNEGLKFFDNMR-RGYL 439



 Score = 57.8 bits (138), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/94 (28%), Positives = 52/94 (55%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           GL+IH +++  G K N  I   L+ ++ KCG +++A ++F E  ++ L  ++ MI G+  
Sbjct: 326 GLRIHNYLSGNGFKLNLVIGTALVDMYAKCGNIEHAEKVFHETKEKGLLIWSVMIWGWAI 385

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
           +G   ++L     +  +G +PD   F  +L A +
Sbjct: 386 HGHFRKALQYFEWMKFTGTKPDSVVFLAVLNACS 419


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 132/452 (29%), Positives = 242/452 (53%), Gaps = 9/452 (1%)

Query: 51  ALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRT 110
           AL+   +S    +G  IH    K G   ++ +   L  ++ KCG   Y  ++F+++    
Sbjct: 264 ALKASADSSLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPD 323

Query: 111 LSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLG 170
           + ++  +I  Y++ G+ E ++   +++  S   P+ YTF+ ++ A     +N+ + +  G
Sbjct: 324 VVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISAC----ANLAIAK-WG 378

Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
             +H  +L+  +     +  ++V  Y K G    A +VF  +  K++I  +++I+ +   
Sbjct: 379 EQIHGHVLRLGLVDALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQG 438

Query: 231 GFVEDAEEIF---RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG 287
           G+ ++A +     R+   K      + +     S+    +  +VH  ++      +  + 
Sbjct: 439 GYAKEAFDYLSWMRREGPKPNEFALSSVLSVCGSMALLEQGKQVHAHVLCIGIDHEAMVH 498

Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347
           SAL+ MY+KCG +++A ++F+ M+  N+ +WT+MI+GY ++G   +A+ LF  +    ++
Sbjct: 499 SALISMYSKCGSVEEASKIFNGMKINNIISWTAMINGYAEHGYSQEAINLFEKISSVGLK 558

Query: 348 PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALK 407
           P+YVTF+G L+AC HAG+VD G   F  M  +Y + P  EHY C++DLL RAG L +A  
Sbjct: 559 PDYVTFIGVLTACSHAGMVDLGFYYFMLMTNEYQISPSKEHYGCIIDLLCRAGRLSEAEH 618

Query: 408 FVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG 467
            +  MP   +  VW+ LL SCR+H DV+     A ++ +L+ N   G ++AL+N  AA G
Sbjct: 619 MIRSMPCYTDDVVWSTLLRSCRVHGDVDRGRWTAEQLLRLDPNS-AGTHIALANIYAAKG 677

Query: 468 KWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
           +W     +R+ MK +GV+K+ G SWV     L
Sbjct: 678 RWKEAAHIRKLMKSKGVIKERGWSWVNVNDKL 709



 Score =  119 bits (299), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/374 (22%), Positives = 186/374 (49%), Gaps = 14/374 (3%)

Query: 63  YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
           +G  +H    K+G+  +  +S  L+ +++K G ++   ++F ++ +R + ++  +IAG +
Sbjct: 175 FGELLHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLV 234

Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
             G   E+L    ++  S    D +TF++ LKAS    ++  L  + G+ +H Q +K   
Sbjct: 235 HAGYNMEALLYFSEMWISKVGYDSHTFAIALKAS----ADSSLLHH-GKAIHTQTIKQGF 289

Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
                +   L   Y K GK  Y   +F+ M   +V+  T++I+ ++ +G  E A E F++
Sbjct: 290 DESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKR 349

Query: 243 TVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
             + ++      + A+I   + ++  A+   ++H  +++    + + + +++V +Y+K G
Sbjct: 350 MRKSNVSPNKYTFAAVISACA-NLAIAKWGEQIHGHVLRLGLVDALSVANSIVTLYSKSG 408

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            +  A  VF  + +K++ +W+++I  Y + G   +A +    M+    +PN       LS
Sbjct: 409 LLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVLS 468

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
            CG   L+++G+++   +         M H A ++ +  + GS+E+A K    M  K N+
Sbjct: 469 VCGSMALLEQGKQVHAHVLCIGIDHEAMVHSA-LISMYSKCGSVEEASKIFNGM--KINN 525

Query: 419 DV-WAALLSSCRLH 431
            + W A+++    H
Sbjct: 526 IISWTAMINGYAEH 539



 Score =  119 bits (298), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 102/373 (27%), Positives = 164/373 (43%), Gaps = 33/373 (8%)

Query: 17  NRHYTLVPPNQTFPPKL---------QNYDS---LSNPLTATSLPSALQHYINSDTPFYG 64
           +R Y   P     PP           +N DS    S+P TAT     +Q           
Sbjct: 25  HRSYASSPALALHPPSSLHSMTAVFSRNLDSPLTYSSPGTATECRELIQQAKQEQLAQNA 84

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
             +H  +         N  +K L+   K G L  +  MFD++  R   ++  +IAGY+  
Sbjct: 85  YSVHNML-------ELNSELKQLV---KQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNA 134

Query: 125 GQVEESLSLVRKL-VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
               E+L L   + V  G + D +  S+ LKA   C   V +    G ++H   +K  + 
Sbjct: 135 SDSYEALILFSNMWVQPGLQRDQFMISVALKA---CGLGVNIC--FGELLHGFSVKSGLI 189

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEI 239
               + +AL+D Y+K GK      VF  M ++NV+  T++I+G +  G+  +A     E+
Sbjct: 190 NSVFVSSALIDMYMKVGKIEQGCRVFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEM 249

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
           +   V  D   +   ++  + S         +H Q IK  F E   + + L  MY KCGK
Sbjct: 250 WISKVGYDSHTFAIALKASADS-SLLHHGKAIHTQTIKQGFDESSFVINTLATMYNKCGK 308

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
            D   R+F+ M+  +V +WT++I  Y + G    A+E F  M++  V PN  TF   +SA
Sbjct: 309 ADYVMRLFEKMKMPDVVSWTTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISA 368

Query: 360 CGHAGLVDKGREI 372
           C +  +   G +I
Sbjct: 369 CANLAIAKWGEQI 381



 Score = 77.8 bits (190), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 130/283 (45%), Gaps = 16/283 (5%)

Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-----RKTVEKDIVVY 251
           VK G+   +R +FD M  ++ I  T++I+G+++     +A  +F     +  +++D  + 
Sbjct: 101 VKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMWVQPGLQRDQFMI 160

Query: 252 NAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311
           +  ++   + +      L +H   +K+     V + SAL+DMY K GKI+   RVF  M 
Sbjct: 161 SVALKACGLGVNICFGEL-LHGFSVKSGLINSVFVSSALIDMYMKVGKIEQGCRVFKKMT 219

Query: 312 QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371
           ++NV +WT++I G    G   +AL  F  M    V  +  TF  AL A   + L+  G+ 
Sbjct: 220 KRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKASADSSLLHHGKA 279

Query: 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK---PNSDVWAALLSSC 428
           I        ++K   +  + +++ L    +      +V+ + EK   P+   W  L+++ 
Sbjct: 280 IHTQ-----TIKQGFDESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSWTTLITTY 334

Query: 429 RLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA--AAGKW 469
               + E A  A   + K N +     + A+ +  A  A  KW
Sbjct: 335 VQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKW 377


>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Brachypodium distachyon]
          Length = 773

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 164/442 (37%), Positives = 247/442 (55%), Gaps = 25/442 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G   HA I +     +  I+  L+ ++ K   +  AG +F  L QR   +++ M+AGY K
Sbjct: 341 GKAFHAVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWSLMVAGYCK 400

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTF-----SMILKASTCCRSNVPLPR-NLGRMVHAQI 177
            G   + L L R++    +  D   F     S++   S+C R    L R  LG+ VH   
Sbjct: 401 AGLDVKCLELYRQM----QCRDHDEFLCDITSLVSAISSCSR----LGRLRLGQSVHCYS 452

Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM-LEKNVICSTSMISGFMSQGFVEDA 236
           +KC +  + +   +L+  Y + G    A  +F +  L ++V+   ++IS +   G   DA
Sbjct: 453 IKCLLDENSIT-NSLIGMYGRCGNFELACKIFAVAKLRRDVVTWNALISSYSHVGRSNDA 511

Query: 237 EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQL----IKNVFFE-DVKLGSALV 291
             ++ + + +D V  N+      IS      ALE H +L    +KN+  E DV + +ALV
Sbjct: 512 LSLYGQMLTED-VKPNSSTLITVISACANLAALE-HGELLHSYVKNMGLESDVSISTALV 569

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
           DMY KCG++  AR +FD M Q++V TW  MI GYG +G  NQAL+LF  M+   ++PN +
Sbjct: 570 DMYTKCGQLGTARGIFDSMLQRDVVTWNVMISGYGMHGEANQALKLFSEMEAGSIKPNSL 629

Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411
           TFL  LSAC HAGLVD+GR++F  M   Y ++P ++HYACMVDLLG++G L++A   VL 
Sbjct: 630 TFLAILSACCHAGLVDEGRKLFIRMG-GYRLEPNLKHYACMVDLLGKSGLLQEAEDLVLA 688

Query: 412 MPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471
           MP KP+  VW  LLS+C++HD+ EM    A + F  +  +  G Y+ +SN+  +A KWD 
Sbjct: 689 MPIKPDGGVWGTLLSACKVHDNFEMGLRVAKKAFSSDPRN-DGYYILMSNSYGSAEKWDE 747

Query: 472 VTELREKMKLRGVLKDTGCSWV 493
           + +LR+ MK  GV K  G S V
Sbjct: 748 IEKLRDTMKNYGVEKGVGWSAV 769



 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 97/382 (25%), Positives = 187/382 (48%), Gaps = 30/382 (7%)

Query: 64  GLKIHAHITKTGV---KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120
           G  +H++  K G+     +  +S  L+ ++ +CG+L  A ++FDE+ +R + A+  +++G
Sbjct: 132 GTSVHSYSVKFGLLAGDGSVAVSSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVSG 191

Query: 121 YLKNGQVEESL----SLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
            ++NG+  + +     ++R    SG RP+  T    L+A       V    + GR +H  
Sbjct: 192 CVRNGECGKGICYLVQMIRLAGDSGARPNSRTMESGLEA-----CGVLGELSAGRCLHGY 246

Query: 177 ILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236
            +K  ++   ++ +AL   Y K   T  A I+F  + EK+V+  T +I  +  +G   +A
Sbjct: 247 AVKEGIRDCALVVSALFSMYSKCDMTEDACILFPELTEKDVVSWTGLIGAYCRRGLAREA 306

Query: 237 EEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVD 292
            E+F++     ++ D V+ + ++ G   S    R     H  +I+  F + V + ++L+ 
Sbjct: 307 VELFQEMEQSGLQPDEVLVSCVLSGLGSSANVNRGK-AFHAVIIRRNFGDSVLIANSLIS 365

Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV- 351
           MY K   +D A  VF  + Q++  +W+ M+ GY K G   + LEL+  MQ C     ++ 
Sbjct: 366 MYGKFELVDVAGTVFGMLHQRDDESWSLMVAGYCKAGLDVKCLELYRQMQ-CRDHDEFLC 424

Query: 352 ---TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA---CMVDLLGRAGSLEQA 405
              + + A+S+C   G +  G+ +       YS+K  ++  +    ++ + GR G+ E A
Sbjct: 425 DITSLVSAISSCSRLGRLRLGQSV-----HCYSIKCLLDENSITNSLIGMYGRCGNFELA 479

Query: 406 LKFVLEMPEKPNSDVWAALLSS 427
            K       + +   W AL+SS
Sbjct: 480 CKIFAVAKLRRDVVTWNALISS 501



 Score =  115 bits (288), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 184/399 (46%), Gaps = 22/399 (5%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G  +H +  K G++    +   L  ++ KC   + A  +F EL ++ + ++  +I  Y +
Sbjct: 240 GRCLHGYAVKEGIRDCALVVSALFSMYSKCDMTEDACILFPELTEKDVVSWTGLIGAYCR 299

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G   E++ L +++  SG +PD    S +L +     +NV    N G+  HA I++ +  
Sbjct: 300 RGLAREAVELFQEMEQSGLQPDEVLVSCVL-SGLGSSANV----NRGKAFHAVIIRRNFG 354

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
              ++  +L+  Y K      A  VF M+ +++    + M++G+   G      E++R+ 
Sbjct: 355 DSVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWSLMVAGYCKAGLDVKCLELYRQM 414

Query: 244 VEKD----IVVYNAMIEGYSISIETARKAL--EVHCQLIKNVFFEDVKLGSALVDMYAKC 297
             +D    +    +++   S      R  L   VHC  IK +  E+  + ++L+ MY +C
Sbjct: 415 QCRDHDEFLCDITSLVSAISSCSRLGRLRLGQSVHCYSIKCLLDEN-SITNSLIGMYGRC 473

Query: 298 GKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
           G  + A ++F   + +++V TW ++I  Y   G  N AL L+  M    V+PN  T +  
Sbjct: 474 GNFELACKIFAVAKLRRDVVTWNALISSYSHVGRSNDALSLYGQMLTEDVKPNSSTLITV 533

Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
           +SAC +   ++ G E+  S  ++  ++  +     +VD+  + G L  A      M ++ 
Sbjct: 534 ISACANLAALEHG-ELLHSYVKNMGLESDVSISTALVDMYTKCGQLGTARGIFDSMLQR- 591

Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA 455
           +   W  ++S   +H +       AN+  KL +    G+
Sbjct: 592 DVVTWNVMISGYGMHGE-------ANQALKLFSEMEAGS 623



 Score = 89.0 bits (219), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 150/319 (47%), Gaps = 21/319 (6%)

Query: 65  LKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKN 124
           L++HA  + +G+    + + KL+  +   G   +A   F   P      +N ++  +   
Sbjct: 32  LRLHALASTSGLSSRPDFAAKLVSAYSSSGLPGFATLAFSASPCPDTFLWNSLLRSHHCA 91

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
              + +LS  R++ +SG RP  +T  +   A+        LP  +G  VH+  +K  + A
Sbjct: 92  SDFDSALSAHRRMRASGARPSRFTAPLAASAAA---ELAALP--VGTSVHSYSVKFGLLA 146

Query: 185 DD---VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
            D    + ++LV  Y + G    A  +FD M+E++V+  T+++SG +  G   +  +   
Sbjct: 147 GDGSVAVSSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVSGCVRNG---ECGKGIC 203

Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEV----------HCQLIKNVFFEDVKLGSALV 291
             V+   +  ++     S ++E+  +A  V          H   +K    +   + SAL 
Sbjct: 204 YLVQMIRLAGDSGARPNSRTMESGLEACGVLGELSAGRCLHGYAVKEGIRDCALVVSALF 263

Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
            MY+KC   +DA  +F  + +K+V +WT +I  Y + G   +A+ELF  M++  +QP+ V
Sbjct: 264 SMYSKCDMTEDACILFPELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEV 323

Query: 352 TFLGALSACGHAGLVDKGR 370
                LS  G +  V++G+
Sbjct: 324 LVSCVLSGLGSSANVNRGK 342



 Score = 66.2 bits (160), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 70/129 (54%), Gaps = 11/129 (8%)

Query: 35  NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
           N  +L   ++A +  +AL+H         G  +H+++   G++ + +IS  L+ ++ KCG
Sbjct: 526 NSSTLITVISACANLAALEH---------GELLHSYVKNMGLESDVSISTALVDMYTKCG 576

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
            L  A  +FD + QR +  +N MI+GY  +G+  ++L L  ++ +   +P+  TF  IL 
Sbjct: 577 QLGTARGIFDSMLQRDVVTWNVMISGYGMHGEANQALKLFSEMEAGSIKPNSLTFLAILS 636

Query: 155 ASTCCRSNV 163
           A  CC + +
Sbjct: 637 A--CCHAGL 643



 Score = 62.8 bits (151), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/179 (25%), Positives = 82/179 (45%), Gaps = 22/179 (12%)

Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL----ELFC 339
           V + S+LV MYA+CG + DA ++FD M +++V  WT+++ G  +NG   + +    ++  
Sbjct: 151 VAVSSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVSGCVRNGECGKGICYLVQMIR 210

Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD-LLGR 398
           +  +   +PN  T    L ACG  G +  GR +       Y++K  +   A +V  L   
Sbjct: 211 LAGDSGARPNSRTMESGLEACGVLGELSAGRCL-----HGYAVKEGIRDCALVVSALFSM 265

Query: 399 AGSLEQALKFVLEMPEKPNSDV--WAALLSS-CR---------LHDDVEMANIAANEIF 445
               +      +  PE    DV  W  L+ + CR         L  ++E + +  +E+ 
Sbjct: 266 YSKCDMTEDACILFPELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVL 324


>gi|226505202|ref|NP_001141725.1| uncharacterized protein LOC100273856 [Zea mays]
 gi|194705708|gb|ACF86938.1| unknown [Zea mays]
 gi|413956425|gb|AFW89074.1| hypothetical protein ZEAMMB73_742653 [Zea mays]
          Length = 635

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 134/404 (33%), Positives = 227/404 (56%), Gaps = 10/404 (2%)

Query: 95  ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF-SMIL 153
            L  A  +FD +P+R   +++ +++ ++++GQ   +L++ R+++     P G    +   
Sbjct: 108 GLASARALFDRMPRRDHFSWSAIVSAHVRHGQPRAALAIYRRML---REPGGSGADNEFT 164

Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
            +S    +        GR +H  +++  + AD V+++AL D Y K G+   AR VFD M 
Sbjct: 165 ASSALAAATAARCARAGRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMP 224

Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIV----VYNAMIEGYSISIETARKAL 269
            ++V+  T+M+  +   G   +   +F + +   I+     Y  ++   +    + +   
Sbjct: 225 VRDVVSWTAMLDRYFDAGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACA-EFTSEKLGK 283

Query: 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
           +VH ++ K+   +    GSALV MY+K G +  A RVF  M + ++ +WT+MI GY +NG
Sbjct: 284 QVHGRMAKSRTGDSCFAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNG 343

Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
            P++AL  F M+     +P++VTF+G LSAC HAGLVDKG  IF S++  Y ++   +HY
Sbjct: 344 QPDEALHCFDMLLSSGFRPDHVTFVGVLSACAHAGLVDKGLGIFHSIKDKYGIEHTADHY 403

Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
           AC++DLL R+G  E+A   +  MP KPN  +WA+LL  CR+H +V +A  AA  +F++  
Sbjct: 404 ACVIDLLSRSGLFERAEDMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFEIEP 463

Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
            + P  YV L+N  A+ G +D V  +R  M+LRG+ K    SW+
Sbjct: 464 EN-PATYVTLANIYASVGLFDEVENMRRTMELRGITKMPASSWI 506



 Score = 79.7 bits (195), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 75/321 (23%), Positives = 139/321 (43%), Gaps = 15/321 (4%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++H H+ + G+  +  +   L  ++ K G L  A  +FD +P R + ++  M+  Y  
Sbjct: 181 GRELHCHVVRRGIDADAVVWSALADMYAKFGRLDDARSVFDRMPVRDVVSWTAMLDRYFD 240

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G+  E   L  +++ SG  P+ +T++ +L+A     S       LG+ VH ++ K    
Sbjct: 241 AGRDGEGFRLFVRMMRSGILPNEFTYAGVLRACAEFTSE-----KLGKQVHGRMAKSRTG 295

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF--- 240
                 +ALV  Y K G    A  VF  M + +++  T+MISG+   G  ++A   F   
Sbjct: 296 DSCFAGSALVHMYSKYGDMGTAMRVFRGMPKPDLVSWTAMISGYAQNGQPDEALHCFDML 355

Query: 241 -RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSA-LVDMYAKCG 298
                  D V +  ++   + +     K L +   +      E      A ++D+ ++ G
Sbjct: 356 LSSGFRPDHVTFVGVLSACAHA-GLVDKGLGIFHSIKDKYGIEHTADHYACVIDLLSRSG 414

Query: 299 KIDDARRVFDHMQQK-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP-NYVTFLGA 356
             + A  + + M  K N F W S++ G   + N   A      + E  ++P N  T++  
Sbjct: 415 LFERAEDMINTMPVKPNKFLWASLLGGCRIHKNVRLAWWAAEALFE--IEPENPATYVTL 472

Query: 357 LSACGHAGLVDKGREIFESME 377
            +     GL D+   +  +ME
Sbjct: 473 ANIYASVGLFDEVENMRRTME 493


>gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19191, mitochondrial; Flags: Precursor
 gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 149/431 (34%), Positives = 238/431 (55%), Gaps = 16/431 (3%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ--RTLSAYNYMIAGYLKN 124
           +HA   + GV     ++   +  + KCG L  A  +F+ + +  RT+ ++N M   Y   
Sbjct: 175 MHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVF 234

Query: 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
           G+  ++  L   ++    +PD  TF  I  A++C     P     GR++H+  +      
Sbjct: 235 GEAFDAFGLYCLMLREEFKPDLSTF--INLAASC---QNPETLTQGRLIHSHAIHLGTDQ 289

Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR--- 241
           D       +  Y K   T  AR++FD+M  +  +  T MISG+  +G +++A  +F    
Sbjct: 290 DIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMI 349

Query: 242 KTVEK-DIVVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
           K+ EK D+V   ++I G     S+ET  K ++     I     ++V + +AL+DMY+KCG
Sbjct: 350 KSGEKPDLVTLLSLISGCGKFGSLETG-KWIDARAD-IYGCKRDNVMICNALIDMYSKCG 407

Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
            I +AR +FD+  +K V TWT+MI GY  NG   +AL+LF  M +   +PN++TFL  L 
Sbjct: 408 SIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQ 467

Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
           AC H+G ++KG E F  M++ Y++ P ++HY+CMVDLLGR G LE+AL+ +  M  KP++
Sbjct: 468 ACAHSGSLEKGWEYFHIMKQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDA 527

Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
            +W ALL++C++H +V++A  AA  +F L        YV ++N  AAAG WD    +R  
Sbjct: 528 GIWGALLNACKIHRNVKIAEQAAESLFNLEPQ-MAAPYVEMANIYAAAGMWDGFARIRSI 586

Query: 479 MKLRGVLKDTG 489
           MK R + K  G
Sbjct: 587 MKQRNIKKYPG 597



 Score =  124 bits (312), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 82/355 (23%), Positives = 170/355 (47%), Gaps = 12/355 (3%)

Query: 67  IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
           +HAH+ K+    +  +    + + +KC ++ YA ++F+ +P+R  + +N M++G+ ++G 
Sbjct: 74  VHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGH 133

Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
            +++ SL R++  +   PD  T   ++++++  +S       L   +HA  ++  V    
Sbjct: 134 TDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKS-----LKLLEAMHAVGIRLGVDVQV 188

Query: 187 VLYTALVDSYVKGGKTSYARIVFDMM--LEKNVICSTSMISGFMSQGFVEDAEEIF---- 240
            +    + +Y K G    A++VF+ +   ++ V+   SM   +   G   DA  ++    
Sbjct: 189 TVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLML 248

Query: 241 RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
           R+  + D+  +  +      + ET  +   +H   I     +D++  +  + MY+K    
Sbjct: 249 REEFKPDLSTFINLAASCQ-NPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDT 307

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
             AR +FD M  +   +WT MI GY + G+ ++AL LF  M +   +P+ VT L  +S C
Sbjct: 308 CSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGC 367

Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
           G  G ++ G+ I    +     +  +     ++D+  + GS+ +A       PEK
Sbjct: 368 GKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEK 422



 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 156/365 (42%), Gaps = 59/365 (16%)

Query: 110 TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST------CCRSNV 163
           +++A+N  I   +      ESL L R++   G  P+ +TF  + KA        CC    
Sbjct: 16  SVNAWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCE--- 72

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
                   MVHA ++K    +D  + TA VD +VK     YA  VF+ M E++     +M
Sbjct: 73  --------MVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAM 124

Query: 224 ISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALE-VHCQLIKN 278
           +SGF   G  + A  +FR+     +  D V    +I+  S S E + K LE +H   I+ 
Sbjct: 125 LSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQ--SASFEKSLKLLEAMHAVGIRL 182

Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--KNVFTWTSMIDGYGKNGNPNQALE 336
                V + +  +  Y KCG +D A+ VF+ + +  + V +W SM   Y   G    A  
Sbjct: 183 GVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFG 242

Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI------------FESMERDYSMKP 384
           L+C+M     +P+  TF+   ++C +   + +GR I             E++    SM  
Sbjct: 243 LYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYS 302

Query: 385 KME------------------HYACMVDLLGRAGSLEQALKF---VLEMPEKPNSDVWAA 423
           K E                   +  M+      G +++AL     +++  EKP+     +
Sbjct: 303 KSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLS 362

Query: 424 LLSSC 428
           L+S C
Sbjct: 363 LISGC 367



 Score = 89.0 bits (219), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 135/280 (48%), Gaps = 23/280 (8%)

Query: 57  NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNY 116
           N +T   G  IH+H    G   +       + ++ K      A  +FD +  RT  ++  
Sbjct: 268 NPETLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTV 327

Query: 117 MIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
           MI+GY + G ++E+L+L   ++ SGE+PD  T   +L   + C     L         A 
Sbjct: 328 MISGYAEKGDMDEALALFHAMIKSGEKPDLVT---LLSLISGCGKFGSLETGKWIDARAD 384

Query: 177 ILKCDVKADDVLY-TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
           I  C  K D+V+   AL+D Y K G    AR +FD   EK V+  T+MI+G+   G   +
Sbjct: 385 IYGC--KRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLE 442

Query: 236 AEEIFRKTVEKDI----VVYNAMIE--GYSISIETARKALEVHCQLIKNVFFEDVKLG-- 287
           A ++F K ++ D     + + A+++   +S S+E   +    +  ++K V+  ++  G  
Sbjct: 443 ALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWE----YFHIMKQVY--NISPGLD 496

Query: 288 --SALVDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMIDG 324
             S +VD+  + GK+++A  +  +M  K +   W ++++ 
Sbjct: 497 HYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNA 536


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  250 bits (638), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 146/434 (33%), Positives = 235/434 (54%), Gaps = 11/434 (2%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G +IH  + K     +  I + L+ ++ K   L  A ++FD +  R L  +N +I+G   
Sbjct: 322 GRQIHGFMIKANADSDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSH 381

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
            G+ +E+ S+   L   G   +  T + +LK++    +      +  R VHA   K    
Sbjct: 382 GGRHDEAFSIFYGLRKEGLGVNRTTLAAVLKSTASLEA-----ASATRQVHALAEKIGFI 436

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF----MSQGFVEDAEEI 239
            D  +   L+DSY K    S A  VF+     ++I  TSMI+        +G ++   E+
Sbjct: 437 FDAHVVNGLIDSYWKCSCLSDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEM 496

Query: 240 FRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
            RK +E D  V ++++   + S+    +  +VH  LIK  F  D   G+ALV  YAKCG 
Sbjct: 497 LRKGLEPDPFVLSSLLNACA-SLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGS 555

Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
           I+DA   F  + ++ V +W++MI G  ++G+  +ALELF  M +  + PN++T    L A
Sbjct: 556 IEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCA 615

Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
           C HAGLVD+ +  F SM+  + +    EHY+CM+DLLGRAG L+ A++ V  MP + N+ 
Sbjct: 616 CNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANAS 675

Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
           VW ALL + R+H D E+  +AA ++F L   ++ G +V L+NT A++G W+ V ++R+ M
Sbjct: 676 VWGALLGASRVHKDPELGKLAAEKLFILEP-EKSGTHVLLANTYASSGMWNEVAKVRKLM 734

Query: 480 KLRGVLKDTGCSWV 493
           K   + K+   SWV
Sbjct: 735 KDSNIKKEPAMSWV 748



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 112/456 (24%), Positives = 205/456 (44%), Gaps = 42/456 (9%)

Query: 64  GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
           G ++HA + + G + +   +  L+ +++K G +  A  +F+++P   + ++N +I+G + 
Sbjct: 221 GRQVHAMVVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVL 280

Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
           NG    ++ L+ ++ SSG  P+ +  S ILKA  C  +      +LGR +H  ++K +  
Sbjct: 281 NGHDHRAIELLLQMKSSGLVPNVFMLSSILKA--CAGAGA---FDLGRQIHGFMIKANAD 335

Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
           +DD +   LVD Y K      A  VFD M  +++I   ++ISG    G  ++A  IF   
Sbjct: 336 SDDYIGVGLVDMYAKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGL 395

Query: 244 VEKDIVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
            ++ + V     A +   + S+E A    +VH    K  F  D  + + L+D Y KC  +
Sbjct: 396 RKEGLGVNRTTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCL 455

Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
            DA RVF+     ++   TSMI    +  +   A++LF  M    ++P+       L+AC
Sbjct: 456 SDAIRVFEECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNAC 515

Query: 361 GHAGLVDKGREI----------------------------FESMERDYSMKPK--MEHYA 390
                 ++G+++                             E  E  +S  P+  +  ++
Sbjct: 516 ASLSAYEQGKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWS 575

Query: 391 CMVDLLGRAGSLEQALKFVLEMPEK---PNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
            M+  L + G  ++AL+    M ++   PN     ++L +C     V+ A    N + ++
Sbjct: 576 AMIGGLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEM 635

Query: 448 NANDRPGA-YVALSNTLAAAGKWDSVTELREKMKLR 482
              DR    Y  + + L  AGK D   EL   M  +
Sbjct: 636 FGIDRTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQ 671



 Score =  121 bits (304), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 104/396 (26%), Positives = 179/396 (45%), Gaps = 30/396 (7%)

Query: 44  TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
           +A ++   L  Y  +     G  +HA++ K+G     ++   L+  + KC     A ++F
Sbjct: 3   SAGTISQQLTRYAAAQALLPGAHLHANLLKSGFL--ASLRNHLISFYSKCRRPCCARRVF 60

Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNV 163
           DE+P     +++ ++  Y  NG    ++     + + G   + +   ++LK        V
Sbjct: 61  DEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKC-------V 113

Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM-LEKNVICSTS 222
           P    LG  VHA  +     +D  +  ALV  Y   G    AR VFD    E+N +    
Sbjct: 114 P-DAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNG 172

Query: 223 MISGFMSQGFVEDAEEIFRKTVEKDI--------VVYNAMIEGYSISIETARKALEVHCQ 274
           ++S ++      DA ++F + V   I         V NA     S +I+  R   +VH  
Sbjct: 173 LMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTG--SRNIDAGR---QVHAM 227

Query: 275 LIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQA 334
           +++  + +DV   +ALVDMY K G++D A  +F+ M   +V +W ++I G   NG+ ++A
Sbjct: 228 VVRMGYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRA 287

Query: 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY--ACM 392
           +EL   M+   + PN       L AC  AG  D GR+I   M +        + Y    +
Sbjct: 288 IELLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIK---ANADSDDYIGVGL 344

Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428
           VD+  +   L+ A+K V +     +  +W AL+S C
Sbjct: 345 VDMYAKNHFLDDAMK-VFDWMSHRDLILWNALISGC 379



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 129/291 (44%), Gaps = 10/291 (3%)

Query: 46  TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE 105
           T+L + L+   + +      ++HA   K G   + ++   L+  + KC  L  A ++F+E
Sbjct: 405 TTLAAVLKSTASLEAASATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEE 464

Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
                + A   MI    +    E ++ L  +++  G  PD +  S +L A   C S    
Sbjct: 465 CSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNA---CASLSAY 521

Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
            +  G+ VHA ++K    +D     ALV +Y K G    A + F  + E+ V+  ++MI 
Sbjct: 522 EQ--GKQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIG 579

Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV--HCQLIKNVFFED 283
           G    G  + A E+F + V++ I   +  +     +   A    E   +   +K +F  D
Sbjct: 580 GLAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGID 639

Query: 284 V--KLGSALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNP 331
              +  S ++D+  + GK+DDA  + + M  Q N   W +++     + +P
Sbjct: 640 RTEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDP 690


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.320    0.134    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,669,146,061
Number of Sequences: 23463169
Number of extensions: 312486211
Number of successful extensions: 883732
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7834
Number of HSP's successfully gapped in prelim test: 3590
Number of HSP's that attempted gapping in prelim test: 710669
Number of HSP's gapped (non-prelim): 53647
length of query: 499
length of database: 8,064,228,071
effective HSP length: 147
effective length of query: 352
effective length of database: 8,910,109,524
effective search space: 3136358552448
effective search space used: 3136358552448
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 79 (35.0 bits)