BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010837
(499 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q1PFQ9|PPR62_ARATH Pentatricopeptide repeat-containing protein At1g28690,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E34 PE=2
SV=2
Length = 520
Score = 614 bits (1584), Expect = e-175, Method: Compositional matrix adjust.
Identities = 306/512 (59%), Positives = 380/512 (74%), Gaps = 41/512 (8%)
Query: 22 LVPPNQ--TFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPN 79
++P N TFP K QN SLS A + ALQ +INS P G KIHA I KTG +P+
Sbjct: 13 ILPSNHYSTFPLK-QNVSSLS---PAKYIAGALQEHINSPAPKAGKKIHADIIKTGFQPD 68
Query: 80 TNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVS 139
NISIKLLILHLKCG L YA Q+FDELP+ TLSAYNYMI+GYLK+G V+E L LV+++
Sbjct: 69 LNISIKLLILHLKCGCLSYARQVFDELPKPTLSAYNYMISGYLKHGLVKELLLLVQRMSY 128
Query: 140 SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKG 199
SGE+ DGYT SM+LKAS S + LPR+L R+VHA+I+KCDV+ DDVL TALVD+YVK
Sbjct: 129 SGEKADGYTLSMVLKASNSRGSTMILPRSLCRLVHARIIKCDVELDDVLITALVDTYVKS 188
Query: 200 GKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS 259
GK AR VF+ M ++NV+C TSMISG+M+QGFVEDAEEIF T KDIVVYNAM+EG+S
Sbjct: 189 GKLESARTVFETMKDENVVCCTSMISGYMNQGFVEDAEEIFNTTKVKDIVVYNAMVEGFS 248
Query: 260 ISIETARKAL-----------------------------------EVHCQLIKNVFFEDV 284
S ETA++++ +VH Q++K+ + +
Sbjct: 249 RSGETAKRSVDMYISMQRAGFHPNISTFASVIGACSVLTSHEVGQQVHAQIMKSGVYTHI 308
Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
K+GS+L+DMYAKCG I+DARRVFD MQ+KNVF+WTSMIDGYGKNGNP +ALELF M+E
Sbjct: 309 KMGSSLLDMYAKCGGINDARRVFDQMQEKNVFSWTSMIDGYGKNGNPEEALELFTRMKEF 368
Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQ 404
++PNYVTFLGALSAC H+GLVDKG EIFESM+RDYSMKPKMEHYAC+VDL+GRAG L +
Sbjct: 369 RIEPNYVTFLGALSACSHSGLVDKGYEIFESMQRDYSMKPKMEHYACIVDLMGRAGDLNK 428
Query: 405 ALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464
A +F MPE+P+SD+WAALLSSC LH +VE+A+IAA+E+FKLNA+ RPGAY+ALSN A
Sbjct: 429 AFEFARAMPERPDSDIWAALLSSCNLHGNVELASIAASELFKLNADKRPGAYLALSNVYA 488
Query: 465 AAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
+ KWD+V+++RE MK R + K G SW +
Sbjct: 489 SNDKWDNVSKIREVMKRRRISKTIGRSWTSED 520
>sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2
SV=1
Length = 659
Score = 300 bits (769), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 162/456 (35%), Positives = 272/456 (59%), Gaps = 10/456 (2%)
Query: 44 TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103
T +S P A++ + F G + H G + + +S L++++ CG L+ A ++F
Sbjct: 75 TRSSFPCAIKACSSLFDIFSGKQTHQQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVF 134
Query: 104 DELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTF--SMILKASTCCRS 161
DE+P+R + ++ MI GY NG +++SL + L+ D F SM L + S
Sbjct: 135 DEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACS 194
Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK--TSYARIVFDMMLEKNVIC 219
VP + L +H+ ++K + L+D+Y KGG+ + AR +FD +++K+ +
Sbjct: 195 RVP-AKGLTESIHSFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVS 253
Query: 220 STSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV----HCQL 275
S++S + G +A E+FR+ V+ +V +NA+ + + AL + H Q+
Sbjct: 254 YNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQV 313
Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQAL 335
I+ +DV +G++++DMY KCG+++ AR+ FD M+ KNV +WT+MI GYG +G+ +AL
Sbjct: 314 IRMGLEDDVIVGTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKAL 373
Query: 336 ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDL 395
ELF M + V+PNY+TF+ L+AC HAGL +G F +M+ + ++P +EHY CMVDL
Sbjct: 374 ELFPAMIDSGVRPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDL 433
Query: 396 LGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA 455
LGRAG L++A + M KP+S +W++LL++CR+H +VE+A I+ +F+L++++ G
Sbjct: 434 LGRAGFLQKAYDLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSN-CGY 492
Query: 456 YVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
Y+ LS+ A AG+W V +R MK RG++K G S
Sbjct: 493 YMLLSHIYADAGRWKDVERVRMIMKNRGLVKPPGFS 528
Score = 40.8 bits (94), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 2/117 (1%)
Query: 309 HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDK 368
++ + +VF+W S+I ++G+ +AL F M++ + P +F A+ AC +
Sbjct: 35 YVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFS 94
Query: 369 GREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
G++ + + + + + ++ + G LE A K E+P K N W +++
Sbjct: 95 GKQTHQQAFV-FGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIP-KRNIVSWTSMI 149
>sp|Q9SIT7|PP151_ARATH Pentatricopeptide repeat-containing protein At2g13600
OS=Arabidopsis thaliana GN=PCMP-E76 PE=3 SV=1
Length = 697
Score = 300 bits (768), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 159/471 (33%), Positives = 264/471 (56%), Gaps = 47/471 (9%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G+++H+ I K+ + I L+ ++ KCG + A ++FDE+ R + ++N +I + +
Sbjct: 171 GVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQ 230
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD-V 182
NG E+L + + ++ S PD T + ++ A C S + +G+ VH +++K D +
Sbjct: 231 NGPAVEALDVFQMMLESRVEPDEVTLASVISA---CASLSAI--KVGQEVHGRVVKNDKL 285
Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
+ D +L A VD Y K + AR +FD M +NVI TSMISG+ + A +F K
Sbjct: 286 RNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMISGYAMAASTKAARLMFTK 345
Query: 243 TVEKDIVVYNAMIEGYSISIETARK----------------------------------A 268
E+++V +NA+I GY+ + E
Sbjct: 346 MAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYSFANILKACADLAELHLG 405
Query: 269 LEVHCQLIKNVF------FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
++ H ++K+ F +D+ +G++L+DMY KCG +++ VF M +++ +W +MI
Sbjct: 406 MQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMI 465
Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382
G+ +NG N+ALELF M E +P+++T +G LSACGHAG V++GR F SM RD+ +
Sbjct: 466 IGFAQNGYGNEALELFREMLESGEKPDHITMIGVLSACGHAGFVEEGRHYFSSMTRDFGV 525
Query: 383 KPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAAN 442
P +HY CMVDLLGRAG LE+A + EMP +P+S +W +LL++C++H ++ + A
Sbjct: 526 APLRDHYTCMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAACKVHRNITLGKYVAE 585
Query: 443 EIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
++ ++ ++ G YV LSN A GKW+ V +R+ M+ GV K GCSW+
Sbjct: 586 KLLEVEPSN-SGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWI 635
Score = 147 bits (371), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/278 (29%), Positives = 145/278 (52%), Gaps = 36/278 (12%)
Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
R VHA ++K + + L+D+Y K G R VFD M ++N+ S+++G
Sbjct: 40 RYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVTGLTKL 99
Query: 231 GFVEDAEEIFRKTVEKDIVVYNAMIEGYS---------------------------ISIE 263
GF+++A+ +FR E+D +N+M+ G++ S+
Sbjct: 100 GFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYSFASVL 159
Query: 264 TA-------RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF 316
+A K ++VH + K+ F DV +GSALVDMY+KCG ++DA+RVFD M +NV
Sbjct: 160 SACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRVFDEMGDRNVV 219
Query: 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM 376
+W S+I + +NG +AL++F MM E V+P+ VT +SAC + G+E+ +
Sbjct: 220 SWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACASLSAIKVGQEVHGRV 279
Query: 377 ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE-MP 413
++ ++ + VD+ + +++A +F+ + MP
Sbjct: 280 VKNDKLRNDIILSNAFVDMYAKCSRIKEA-RFIFDSMP 316
Score = 143 bits (360), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 107/369 (28%), Positives = 171/369 (46%), Gaps = 73/369 (19%)
Query: 60 TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIA 119
+ Y +HA + K+G I +L+ + KCG+L+ Q+FD++PQR + +N ++
Sbjct: 35 SAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVFDKMPQRNIYTWNSVVT 94
Query: 120 GYLKNGQVEESLSLVRKL-----------VSSGERPD--------------------GYT 148
G K G ++E+ SL R + VS + D Y+
Sbjct: 95 GLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFAMMHKEGFVLNEYS 154
Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIV 208
F+ +L S C N N G VH+ I K +D + +ALVD Y K G + A+ V
Sbjct: 155 FASVL--SACSGLN---DMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCGNVNDAQRV 209
Query: 209 FDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR----KTVEKDIVVYNAMIEGYSISIET 264
FD M ++NV+ S+I+ F G +A ++F+ VE D V ++I + S+
Sbjct: 210 FDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVISACA-SLSA 268
Query: 265 ARKALEVHCQLIKN-VFFEDVKLGSALVDMYAKCGKIDDARRVFD--------------- 308
+ EVH +++KN D+ L +A VDMYAKC +I +AR +FD
Sbjct: 269 IKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVIAETSMIS 328
Query: 309 ----------------HMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
M ++NV +W ++I GY +NG +AL LFC+++ V P + +
Sbjct: 329 GYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRESVCPTHYS 388
Query: 353 FLGALSACG 361
F L AC
Sbjct: 389 FANILKACA 397
>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770
OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1
Length = 694
Score = 293 bits (749), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 159/438 (36%), Positives = 254/438 (57%), Gaps = 18/438 (4%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD--ELPQRTLSAYNYMIAGY 121
G +HA + + G + + L+ L+ KC L A +F+ LP+RT+ ++ +++ Y
Sbjct: 138 GRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAY 197
Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
+NG+ E+L + ++ +PD +L A TC + GR +HA ++K
Sbjct: 198 AQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQD-----LKQGRSIHASVVKMG 252
Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
++ + L +L Y K G+ + A+I+FD M N+I +MISG+ G+ +A ++F
Sbjct: 253 LEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFH 312
Query: 242 KTVEKD-----IVVYNAMIEGYSI-SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
+ + KD I + +A+ + S+E AR E + ++ + +DV + SAL+DM+A
Sbjct: 313 EMINKDVRPDTISITSAISACAQVGSLEQARSMYEY---VGRSDYRDDVFISSALIDMFA 369
Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
KCG ++ AR VFD ++V W++MI GYG +G +A+ L+ M+ V PN VTFLG
Sbjct: 370 KCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLG 429
Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
L AC H+G+V +G F M D+ + P+ +HYAC++DLLGRAG L+QA + + MP +
Sbjct: 430 LLMACNHSGMVREGWWFFNRMA-DHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQ 488
Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
P VW ALLS+C+ H VE+ AA ++F ++ ++ G YV LSN AAA WD V E+
Sbjct: 489 PGVTVWGALLSACKKHRHVELGEYAAQQLFSIDPSN-TGHYVQLSNLYAAARLWDRVAEV 547
Query: 476 REKMKLRGVLKDTGCSWV 493
R +MK +G+ KD GCSWV
Sbjct: 548 RVRMKEKGLNKDVGCSWV 565
Score = 162 bits (411), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 103/373 (27%), Positives = 195/373 (52%), Gaps = 16/373 (4%)
Query: 66 KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
+IHA + G++ + + KL+ G + +A Q+FD+LP+ + +N +I GY +N
Sbjct: 39 QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNN 98
Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
+++L + + + PD +TF +LKA C L +GR VHAQ+ + AD
Sbjct: 99 HFQDALLMYSNMQLARVSPDSFTFPHLLKA---CSGLSHL--QMGRFVHAQVFRLGFDAD 153
Query: 186 DVLYTALVDSYVKGGKTSYARIVFDM--MLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
+ L+ Y K + AR VF+ + E+ ++ T+++S + G +A EIF +
Sbjct: 154 VFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQM 213
Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
V+ D V +++ ++ ++ ++ +H ++K + L +L MYAKCG+
Sbjct: 214 RKMDVKPDWVALVSVLNAFT-CLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQ 272
Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
+ A+ +FD M+ N+ W +MI GY KNG +A+++F M V+P+ ++ A+SA
Sbjct: 273 VATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISA 332
Query: 360 CGHAGLVDKGREIFESMER-DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
C G +++ R ++E + R DY + + + ++D+ + GS+E A + V + +
Sbjct: 333 CAQVGSLEQARSMYEYVGRSDY--RDDVFISSALIDMFAKCGSVEGA-RLVFDRTLDRDV 389
Query: 419 DVWAALLSSCRLH 431
VW+A++ LH
Sbjct: 390 VVWSAMIVGYGLH 402
Score = 95.1 bits (235), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 72/320 (22%), Positives = 156/320 (48%), Gaps = 14/320 (4%)
Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
+ +HA++L ++ L T L+ + G ++AR VFD + + ++I G+
Sbjct: 38 KQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRN 97
Query: 231 GFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
+DA ++ V D + +++ S + + VH Q+ + F DV +
Sbjct: 98 NHFQDALLMYSNMQLARVSPDSFTFPHLLKACS-GLSHLQMGRFVHAQVFRLGFDADVFV 156
Query: 287 GSALVDMYAKCGKIDDARRVFDH--MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
+ L+ +YAKC ++ AR VF+ + ++ + +WT+++ Y +NG P +ALE+F M++
Sbjct: 157 QNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKM 216
Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMER-DYSMKPKMEHYACMVDLLGRAGSLE 403
V+P++V + L+A + +GR I S+ + ++P + + + + G +
Sbjct: 217 DVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDL--LISLNTMYAKCGQVA 274
Query: 404 QALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL 463
A K + + + PN +W A++S + A +E+ +N + RP +++++ +
Sbjct: 275 TA-KILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEM--INKDVRPDT-ISITSAI 330
Query: 464 AAAGKWDSVTELREKMKLRG 483
+A + S+ + R + G
Sbjct: 331 SACAQVGSLEQARSMYEYVG 350
>sp|Q9LUL5|PP229_ARATH Pentatricopeptide repeat-containing protein At3g14330
OS=Arabidopsis thaliana GN=PCMP-H57 PE=2 SV=2
Length = 710
Score = 285 bits (730), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 166/451 (36%), Positives = 259/451 (57%), Gaps = 17/451 (3%)
Query: 52 LQHYINSDTPFYGLKIHAHITKT-GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRT 110
L I++ + +G+KI + I ++ N + KL+ L C L A ++FD++ +
Sbjct: 138 LHACISAKSLHHGIKICSLILNNPSLRHNPKLLSKLITLFSVCRRLDLARKIFDDVTDSS 197
Query: 111 L---SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR 167
L + M GY +NG ++L + ++ S P ++ S+ LKA +
Sbjct: 198 LLTEKVWAAMAIGYSRNGSPRDALIVYVDMLCSFIEPGNFSISVALKACVDLKD-----L 252
Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGF 227
+GR +HAQI+K K D V+Y L+ Y++ G AR VFD M E+NV+ S+IS
Sbjct: 253 RVGRGIHAQIVKRKEKVDQVVYNVLLKLYMESGLFDDARKVFDGMSERNVVTWNSLISVL 312
Query: 228 MSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL-----EVHCQLIKNVFFE 282
+ V + +FRK E+ I A + +I +R A E+H Q++K+
Sbjct: 313 SKKVRVHEMFNLFRKMQEEMIGFSWATLT--TILPACSRVAALLTGKEIHAQILKSKEKP 370
Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
DV L ++L+DMY KCG+++ +RRVFD M K++ +W M++ Y NGN + + LF M
Sbjct: 371 DVPLLNSLMDMYGKCGEVEYSRRVFDVMLTKDLASWNIMLNCYAINGNIEEVINLFEWMI 430
Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
E V P+ +TF+ LS C GL + G +FE M+ ++ + P +EHYAC+VD+LGRAG +
Sbjct: 431 ESGVAPDGITFVALLSGCSDTGLTEYGLSLFERMKTEFRVSPALEHYACLVDILGRAGKI 490
Query: 403 EQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462
++A+K + MP KP++ +W +LL+SCRLH +V + IAA E+F L ++ PG YV +SN
Sbjct: 491 KEAVKVIETMPFKPSASIWGSLLNSCRLHGNVSVGEIAAKELFVLEPHN-PGNYVMVSNI 549
Query: 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
A A WD+V ++RE MK RGV K+ GCSWV
Sbjct: 550 YADAKMWDNVDKIREMMKQRGVKKEAGCSWV 580
>sp|Q9SI53|PP147_ARATH Pentatricopeptide repeat-containing protein At2g03880,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2
SV=1
Length = 630
Score = 283 bits (724), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 162/480 (33%), Positives = 271/480 (56%), Gaps = 17/480 (3%)
Query: 20 YTLVPPNQTFPPKLQNYDSL-SNPLTATSLPSA--LQHYINSDTPFYGLKIHAHITKTGV 76
+T + + P ++ DSL S+ L A S + ++ I++ G I H+ G
Sbjct: 33 FTRLCYQRDLPRAMKAMDSLQSHGLWADSATYSELIKCCISNRAVHEGNLICRHLYFNGH 92
Query: 77 KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRK 136
+P + L+ +++K L A Q+FD++PQR + ++ MI+ Y K +++L L+
Sbjct: 93 RPMMFLVNVLINMYVKFNLLNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVL 152
Query: 137 LVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196
++ RP+ YT+S +L++ S+V RM+H I+K +++D + +AL+D +
Sbjct: 153 MLRDNVRPNVYTYSSVLRSCNG-MSDV-------RMLHCGIIKEGLESDVFVRSALIDVF 204
Query: 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE 256
K G+ A VFD M+ + I S+I GF + A E+F++ + A +
Sbjct: 205 AKLGEPEDALSVFDEMVTGDAIVWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLT 264
Query: 257 GY---SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK 313
+ ++ H ++K + +D+ L +ALVDMY KCG ++DA RVF+ M+++
Sbjct: 265 SVLRACTGLALLELGMQAHVHIVK--YDQDLILNNALVDMYCKCGSLEDALRVFNQMKER 322
Query: 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF 373
+V TW++MI G +NG +AL+LF M+ +PNY+T +G L AC HAGL++ G F
Sbjct: 323 DVITWSTMISGLAQNGYSQEALKLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYF 382
Query: 374 ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDD 433
SM++ Y + P EHY CM+DLLG+AG L+ A+K + EM +P++ W LL +CR+ +
Sbjct: 383 RSMKKLYGIDPVREHYGCMIDLLGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRN 442
Query: 434 VEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
+ +A AA ++ L+ D G Y LSN A + KWDSV E+R +M+ RG+ K+ GCSW+
Sbjct: 443 MVLAEYAAKKVIALDPED-AGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWI 501
>sp|Q5G1T1|PP272_ARATH Pentatricopeptide repeat-containing protein At3g49170,
chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2
SV=1
Length = 850
Score = 281 bits (720), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 159/463 (34%), Positives = 268/463 (57%), Gaps = 21/463 (4%)
Query: 40 SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKC---GAL 96
S+ T +S+ SA N G ++H+ ++G+ + S L+ ++ KC G++
Sbjct: 267 SDKFTLSSVFSACAELENLS---LGKQLHSWAIRSGLVDDVECS--LVDMYAKCSADGSV 321
Query: 97 KYAGQMFDELPQRTLSAYNYMIAGYLKNGQVE-ESLSLVRKLVSSGE-RPDGYTFSMILK 154
++FD + ++ ++ +I GY+KN + E+++L ++++ G P+ +TFS K
Sbjct: 322 DDCRKVFDRMEDHSVMSWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFK 381
Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE 214
A N+ PR +G+ V Q K + ++ + +++ +VK + A+ F+ + E
Sbjct: 382 AC----GNLSDPR-VGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSE 436
Query: 215 KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV----YNAMIEGYSISIETARKALE 270
KN++ + + G E A ++ + E+++ V + +++ G + ++ + RK +
Sbjct: 437 KNLVSYNTFLDGTCRNLNFEQAFKLLSEITERELGVSAFTFASLLSGVA-NVGSIRKGEQ 495
Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
+H Q++K + + +AL+ MY+KCG ID A RVF+ M+ +NV +WTSMI G+ K+G
Sbjct: 496 IHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGF 555
Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
+ LE F M E V+PN VT++ LSAC H GLV +G F SM D+ +KPKMEHYA
Sbjct: 556 AIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYA 615
Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
CMVDLL RAG L A +F+ MP + + VW L +CR+H + E+ +AA +I +L+ N
Sbjct: 616 CMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPN 675
Query: 451 DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
+ P AY+ LSN A AGKW+ TE+R KMK R ++K+ GCSW+
Sbjct: 676 E-PAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWI 717
Score = 135 bits (340), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 127/505 (25%), Positives = 234/505 (46%), Gaps = 60/505 (11%)
Query: 42 PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQ 101
P+ + + S L+ I + G +HA + + ++P++ + L+ L+ K G A
Sbjct: 59 PMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNSLISLYSKSGDSAKAED 118
Query: 102 MFDELP---QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
+F+ + +R + +++ M+A Y NG+ +++ + + + G P+ Y ++ +++A C
Sbjct: 119 VFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGLVPNDYCYTAVIRA--C 176
Query: 159 CRSNVPLPRNLGRMVHAQILKC-DVKADDVLYTALVDSYVKGGKT-SYARIVFDMMLEKN 216
S+ +GR+ ++K ++D + +L+D +VKG + A VFD M E N
Sbjct: 177 SNSDFV---GVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELN 233
Query: 217 VICSTSMISGFMSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSISIETARKALEVH 272
V+ T MI+ M GF +A F V E D +++ + +E ++H
Sbjct: 234 VVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACA-ELENLSLGKQLH 292
Query: 273 CQLIKNVFFEDVKLGSALVDMYAKC---GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
I++ +DV+ +LVDMYAKC G +DD R+VFD M+ +V +WT++I GY KN
Sbjct: 293 SWAIRSGLVDDVE--CSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGYMKNC 350
Query: 330 N-PNQALELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREIF-------------- 373
N +A+ LF M+ + V+PN+ TF A ACG+ G+++
Sbjct: 351 NLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQAFKRGLASNSSV 410
Query: 374 --------------ESMERDY-SMKPK-MEHYACMVDLLGRAGSLEQALKFVLEMPEKP- 416
E +R + S+ K + Y +D R + EQA K + E+ E+
Sbjct: 411 ANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITEREL 470
Query: 417 --NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474
++ +A+LLS + +++ KL + AL + + G D+ +
Sbjct: 471 GVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASR 530
Query: 475 LREKMKLRGVLKDTGCSWVGTESGL 499
+ M+ R V+ SW +G
Sbjct: 531 VFNFMENRNVI-----SWTSMITGF 550
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 92/327 (28%), Positives = 165/327 (50%), Gaps = 31/327 (9%)
Query: 117 MIAGYLKNGQVEESLSLVRKLVSSGERP-DGYTFSMILKASTCCRSNVPLPRNLGRMVHA 175
+I +L G + ++S + + G RP D TFS +LK +C R+ LG++VHA
Sbjct: 32 LILRHLNAGDLRGAVSALDLMARDGIRPMDSVTFSSLLK--SCIRAR---DFRLGKLVHA 86
Query: 176 QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML---EKNVICSTSMISGFMSQGF 232
++++ D++ D VLY +L+ Y K G ++ A VF+ M +++V+ ++M++ + + G
Sbjct: 87 RLIEFDIEPDSVLYNSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGR 146
Query: 233 VEDAEEIFRKTVEKDIV----VYNAMIEGYSIS--IETARKALEVHCQLIKNVFFE-DVK 285
DA ++F + +E +V Y A+I S S + R L L+K FE DV
Sbjct: 147 ELDAIKVFVEFLELGLVPNDYCYTAVIRACSNSDFVGVGRVTLGF---LMKTGHFESDVC 203
Query: 286 LGSALVDMYAKC-GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
+G +L+DM+ K ++A +VFD M + NV TWT MI + G P +A+ F M
Sbjct: 204 VGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLS 263
Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM-EHYAC-MVDLLGRA--- 399
+ + T SAC + G+++ ++++ + + C +VD+ +
Sbjct: 264 GFESDKFTLSSVFSACAELENLSLGKQL-----HSWAIRSGLVDDVECSLVDMYAKCSAD 318
Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLS 426
GS++ K V + E + W AL++
Sbjct: 319 GSVDDCRK-VFDRMEDHSVMSWTALIT 344
>sp|Q9LIC3|PP227_ARATH Putative pentatricopeptide repeat-containing protein At3g13770,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H85 PE=3
SV=1
Length = 628
Score = 281 bits (718), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 146/442 (33%), Positives = 255/442 (57%), Gaps = 13/442 (2%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G ++HAH+ KT P T + +LLI + KC L+ A ++ DE+P++ + ++ MI+ Y +
Sbjct: 71 GQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQ 130
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
G E+L++ +++ S +P+ +TF+ +L ++C R++ LG+ +H I+K +
Sbjct: 131 TGHSSEALTVFAEMMRSDGKPNEFTFATVL--TSCIRAS---GLGLGKQIHGLIVKWNYD 185
Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
+ + ++L+D Y K G+ AR +F+ + E++V+ T++I+G+ G E+A E+F +
Sbjct: 186 SHIFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFHRL 245
Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
+ + V Y +++ S + + HC +++ L ++L+DMY+KCG
Sbjct: 246 HSEGMSPNYVTYASLLTALS-GLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKCGN 304
Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ-ECCVQPNYVTFLGALS 358
+ ARR+FD+M ++ +W +M+ GY K+G + LELF +M+ E V+P+ VT L LS
Sbjct: 305 LSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLS 364
Query: 359 ACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
C H + D G IF+ M +Y KP EHY C+VD+LGRAG +++A +F+ MP KP
Sbjct: 365 GCSHGRMEDTGLNIFDGMVAGEYGTKPGTEHYGCIVDMLGRAGRIDEAFEFIKRMPSKPT 424
Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
+ V +LL +CR+H V++ + ++ + G YV LSN A+AG+W V +R
Sbjct: 425 AGVLGSLLGACRVHLSVDIGESVGRRLIEIEPEN-AGNYVILSNLYASAGRWADVNNVRA 483
Query: 478 KMKLRGVLKDTGCSWVGTESGL 499
M + V K+ G SW+ E L
Sbjct: 484 MMMQKAVTKEPGRSWIQHEQTL 505
Score = 85.5 bits (210), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 111/232 (47%), Gaps = 15/232 (6%)
Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
R VH +IK + L + L+ Y KC ++DAR+V D M +KNV +WT+MI Y
Sbjct: 69 RDGQRVHAHMIKTRYLPATYLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRY 128
Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
+ G+ ++AL +F M +PN TF L++C A + G++I + ++
Sbjct: 129 SQTGHSSEALTVFAEMMRSDGKPNEFTFATVLTSCIRASGLGLGKQI-HGLIVKWNYDSH 187
Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIF 445
+ + ++D+ +AG +++A + +PE+ A + +L D E A E+F
Sbjct: 188 IFVGSSLLDMYAKAGQIKEAREIFECLPERDVVSCTAIIAGYAQLGLDEE-----ALEMF 242
Query: 446 -KLNANDRPGAYVALSNTLAAA--------GKWDSVTELREKMKLRGVLKDT 488
+L++ YV ++ L A GK LR ++ VL+++
Sbjct: 243 HRLHSEGMSPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNS 294
Score = 58.9 bits (141), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 62/127 (48%), Gaps = 10/127 (7%)
Query: 35 NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
NY + ++ LTA S + L H G + H H+ + + + L+ ++ KCG
Sbjct: 253 NYVTYASLLTALSGLALLDH---------GKQAHCHVLRRELPFYAVLQNSLIDMYSKCG 303
Query: 95 ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE-RPDGYTFSMIL 153
L YA ++FD +P+RT ++N M+ GY K+G E L L R + +PD T +L
Sbjct: 304 NLSYARRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVL 363
Query: 154 KASTCCR 160
+ R
Sbjct: 364 SGCSHGR 370
>sp|Q9SX45|PPR75_ARATH Pentatricopeptide repeat-containing protein At1g50270
OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1
Length = 596
Score = 280 bits (715), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 161/496 (32%), Positives = 254/496 (51%), Gaps = 30/496 (6%)
Query: 8 RSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKI 67
R S + H R ++P TFPP L+ L + PF +
Sbjct: 86 RLSFLAYRHMRRNGVIPSRHTFPPLLKAVFKLRD-----------------SNPF---QF 125
Query: 68 HAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV 127
HAHI K G+ + + L+ + G +A ++FD + + + MI G+++NG
Sbjct: 126 HAHIVKFGLDSDPFVRNSLISGYSSSGLFDFASRLFDGAEDKDVVTWTAMIDGFVRNGSA 185
Query: 128 EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD-VKADD 186
E++ ++ +G + T +LKA+ V R GR VH L+ VK D
Sbjct: 186 SEAMVYFVEMKKTGVAANEMTVVSVLKAA----GKVEDVR-FGRSVHGLYLETGRVKCDV 240
Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
+ ++LVD Y K A+ VFD M +NV+ T++I+G++ + +F + ++
Sbjct: 241 FIGSSLVDMYGKCSCYDDAQKVFDEMPSRNVVTWTALIAGYVQSRCFDKGMLVFEEMLKS 300
Query: 247 DIVVYNAMIEGY---SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
D+ + + + VHC +IKN + G+ L+D+Y KCG +++A
Sbjct: 301 DVAPNEKTLSSVLSACAHVGALHRGRRVHCYMIKNSIEINTTAGTTLIDLYVKCGCLEEA 360
Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
VF+ + +KNV+TWT+MI+G+ +G A +LF M V PN VTF+ LSAC H
Sbjct: 361 ILVFERLHEKNVYTWTAMINGFAAHGYARDAFDLFYTMLSSHVSPNEVTFMAVLSACAHG 420
Query: 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA 423
GLV++GR +F SM+ ++M+PK +HYACMVDL GR G LE+A + MP +P + VW A
Sbjct: 421 GLVEEGRRLFLSMKGRFNMEPKADHYACMVDLFGRKGLLEEAKALIERMPMEPTNVVWGA 480
Query: 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483
L SC LH D E+ AA+ + KL + G Y L+N + + WD V +R++MK +
Sbjct: 481 LFGSCLLHKDYELGKYAASRVIKLQPS-HSGRYTLLANLYSESQNWDEVARVRKQMKDQQ 539
Query: 484 VLKDTGCSWVGTESGL 499
V+K G SW+ + L
Sbjct: 540 VVKSPGFSWIEVKGKL 555
>sp|Q9CA56|PP121_ARATH Pentatricopeptide repeat-containing protein At1g74600,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-E69 PE=2
SV=1
Length = 895
Score = 279 bits (714), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 149/434 (34%), Positives = 253/434 (58%), Gaps = 11/434 (2%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G ++H + K+G+ + + L L+ KCG+L+ + ++F +P + + + MI+G+ +
Sbjct: 469 GKQVHGYTLKSGLVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNE 528
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
G + E++ L +++ G PD T + +L T C S+ LPR G+ +H L+ +
Sbjct: 529 YGYLREAIGLFSEMLDDGTSPDESTLAAVL---TVCSSHPSLPR--GKEIHGYTLRAGID 583
Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
L +ALV+ Y K G AR V+D + E + + +S+ISG+ G ++D +FR
Sbjct: 584 KGMDLGSALVNMYSKCGSLKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDM 643
Query: 244 V----EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
V D +++++ ++S E++ A +VH + K + +GS+L+ MY+K G
Sbjct: 644 VMSGFTMDSFAISSILKAAALSDESSLGA-QVHAYITKIGLCTEPSVGSSLLTMYSKFGS 702
Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
IDD + F + ++ WT++I Y ++G N+AL+++ +M+E +P+ VTF+G LSA
Sbjct: 703 IDDCCKAFSQINGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSA 762
Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
C H GLV++ SM +DY ++P+ HY CMVD LGR+G L +A F+ M KP++
Sbjct: 763 CSHGGLVEESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDAL 822
Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
VW LL++C++H +VE+ +AA + +L +D GAY++LSN LA G+WD V E R+ M
Sbjct: 823 VWGTLLAACKIHGEVELGKVAAKKAIELEPSD-AGAYISLSNILAEVGEWDEVEETRKLM 881
Query: 480 KLRGVLKDTGCSWV 493
K GV K+ G S V
Sbjct: 882 KGTGVQKEPGWSSV 895
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 98/407 (24%), Positives = 187/407 (45%), Gaps = 34/407 (8%)
Query: 67 IHAHITKTGVKP-NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
+ AH+ + + P + ++ LL + G++ A ++FD +PQ + + N MI+GY ++
Sbjct: 70 LQAHLLRRYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHR 129
Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
EESL K+ G + ++ ++ A C PL +V +K
Sbjct: 130 LFEESLRFFSKMHFLGFEANEISYGSVISA--CSALQAPL---FSELVCCHTIKMGYFFY 184
Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV- 244
+V+ +AL+D + K + A VF L NV C ++I+G + ++F +
Sbjct: 185 EVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCV 244
Query: 245 ---EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
+ D Y++++ + S+E R V ++IK EDV + +A+VD+YAKCG +
Sbjct: 245 GFQKPDSYTYSSVLAACA-SLEKLRFGKVVQARVIK-CGAEDVFVCTAIVDLYAKCGHMA 302
Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
+A VF + +V +WT M+ GY K+ + ALE+F M+ V+ N T +SACG
Sbjct: 303 EAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACG 362
Query: 362 HAGLVDKGREIFE-SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
+V + ++ + + + + A ++ + ++G +++ E+ D+
Sbjct: 363 RPSMVCEASQVHAWVFKSGFYLDSSVA--AALISMYSKSGD--------IDLSEQVFEDL 412
Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG 467
DD++ NI I + + +PG + L + G
Sbjct: 413 -----------DDIQRQNIVNVMITSFSQSKKPGKAIRLFTRMLQEG 448
Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 70/279 (25%), Positives = 143/279 (51%), Gaps = 16/279 (5%)
Query: 66 KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP--QRTLSAYNYMIAGYLK 123
++HA + K+G +++++ L+ ++ K G + + Q+F++L QR + N MI + +
Sbjct: 372 QVHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQ-NIVNVMITSFSQ 430
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
+ + +++ L +++ G R D ++ +L C NLG+ VH LK +
Sbjct: 431 SKKPGKAIRLFTRMLQEGLRTDEFSVCSLLSVLDCL--------NLGKQVHGYTLKSGLV 482
Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
D + ++L Y K G + +F + K+ C SMISGF G++ +A +F +
Sbjct: 483 LDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEM 542
Query: 244 VEKDIVVYNAMIEGYSISIETARKAL----EVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
++ + + +++ ++ +L E+H ++ + + LGSALV+MY+KCG
Sbjct: 543 LDDGTSPDESTLAAV-LTVCSSHPSLPRGKEIHGYTLRAGIDKGMDLGSALVNMYSKCGS 601
Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
+ AR+V+D + + + + +S+I GY ++G LF
Sbjct: 602 LKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLF 640
Score = 73.6 bits (179), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 78/307 (25%), Positives = 133/307 (43%), Gaps = 68/307 (22%)
Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
C+++ +L L+ Y+ + FD+ L K S++S + + G + DA ++
Sbjct: 62 CNLRTTKILQAHLLRRYL---------LPFDVFLTK------SLLSWYSNSGSMADAAKL 106
Query: 240 FRKTVEKDIVVYNAMIEGYSI---------------------------SIETARKALE-- 270
F + D+V N MI GY S+ +A AL+
Sbjct: 107 FDTIPQPDVVSCNIMISGYKQHRLFEESLRFFSKMHFLGFEANEISYGSVISACSALQAP 166
Query: 271 -----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
V C IK +F + SAL+D+++K + +DA +VF NV+ W ++I G
Sbjct: 167 LFSELVCCHTIKMGYFFYEVVESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGA 226
Query: 326 GKNGNPNQALELFCMMQECCV---QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382
+N N +LF E CV +P+ T+ L+AC ++K R F + + +
Sbjct: 227 LRNQNYGAVFDLF---HEMCVGFQKPDSYTYSSVLAACAS---LEKLR--FGKVVQARVI 278
Query: 383 KPKMEH-YAC--MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANI 439
K E + C +VDL + G + +A++ +P P+ W +LS +D
Sbjct: 279 KCGAEDVFVCTAIVDLYAKCGHMAEAMEVFSRIP-NPSVVSWTVMLSGYTKSNDA----F 333
Query: 440 AANEIFK 446
+A EIFK
Sbjct: 334 SALEIFK 340
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 96/200 (48%), Gaps = 5/200 (2%)
Query: 47 SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
++ S L+ SD G ++HA+ITK G+ ++ LL ++ K G++ + F ++
Sbjct: 654 AISSILKAAALSDESSLGAQVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQI 713
Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
L A+ +IA Y ++G+ E+L + + G +PD TF +L A S+ L
Sbjct: 714 NGPDLIAWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSAC----SHGGLV 769
Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR-IVFDMMLEKNVICSTSMIS 225
+++ + ++ ++ Y +VD+ + G+ A + +M ++ + + ++++
Sbjct: 770 EESYFHLNSMVKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDALVWGTLLA 829
Query: 226 GFMSQGFVEDAEEIFRKTVE 245
G VE + +K +E
Sbjct: 830 ACKIHGEVELGKVAAKKAIE 849
>sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290
OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1
Length = 809
Score = 276 bits (706), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 153/434 (35%), Positives = 250/434 (57%), Gaps = 11/434 (2%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G +IH + ++G NIS L+ ++ KCG+L+ A Q+FD + +R + ++N MI Y++
Sbjct: 255 GKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQ 314
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
N +E++ + +K++ G +P + ++ A C L R GR +H ++ +
Sbjct: 315 NENPKEAMLIFQKMLDEGVKPTDVS---VMGALHACADLGDLER--GRFIHKLSVELGLD 369
Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR-- 241
+ + +L+ Y K + A +F + + ++ +MI GF G DA F
Sbjct: 370 RNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQM 429
Query: 242 --KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
+TV+ D Y ++I + + A +H ++++ ++V + +ALVDMYAKCG
Sbjct: 430 RSRTVKPDTFTYVSVITAIA-ELSITHHAKWIHGVVMRSCLDKNVFVTTALVDMYAKCGA 488
Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
I AR +FD M +++V TW +MIDGYG +G ALELF MQ+ ++PN VTFL +SA
Sbjct: 489 IMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTFLSVISA 548
Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
C H+GLV+ G + F M+ +YS++ M+HY MVDLLGRAG L +A F+++MP KP +
Sbjct: 549 CSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVN 608
Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
V+ A+L +C++H +V A AA +F+LN +D G +V L+N AA W+ V ++R M
Sbjct: 609 VYGAMLGACQIHKNVNFAEKAAERLFELNPDD-GGYHVLLANIYRAASMWEKVGQVRVSM 667
Query: 480 KLRGVLKDTGCSWV 493
+G+ K GCS V
Sbjct: 668 LRQGLRKTPGCSMV 681
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 90/309 (29%), Positives = 160/309 (51%), Gaps = 16/309 (5%)
Query: 71 ITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEES 130
+ K G+ KL+ L + G++ A ++F+ + + Y+ M+ G+ K ++++
Sbjct: 60 VFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKA 119
Query: 131 LSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT 190
L ++ P Y F+ +LK C L +G+ +H ++K D T
Sbjct: 120 LQFFVRMRYDDVEPVVYNFTYLLKV---CGDEAEL--RVGKEIHGLLVKSGFSLDLFAMT 174
Query: 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV 250
L + Y K + + AR VFD M E++++ ++++G+ G A E+ + E+++
Sbjct: 175 GLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKP 234
Query: 251 YNAMIEGYSISIETARKAL-------EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDA 303
I +S+ A AL E+H +++ F V + +ALVDMYAKCG ++ A
Sbjct: 235 SFITI----VSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSLETA 290
Query: 304 RRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363
R++FD M ++NV +W SMID Y +N NP +A+ +F M + V+P V+ +GAL AC
Sbjct: 291 RQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADL 350
Query: 364 GLVDKGREI 372
G +++GR I
Sbjct: 351 GDLERGRFI 359
Score = 143 bits (360), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 97/376 (25%), Positives = 182/376 (48%), Gaps = 20/376 (5%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G +IH + K+G + L ++ KC + A ++FD +P+R L ++N ++AGY +
Sbjct: 154 GKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQ 213
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
NG +L +V+ + +P T +L A + R ++G+ +H ++
Sbjct: 214 NGMARMALEMVKSMCEENLKPSFITIVSVLPAVSALR-----LISVGKEIHGYAMRSGFD 268
Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
+ + TALVD Y K G AR +FD MLE+NV+ SMI ++ ++A IF+K
Sbjct: 269 SLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKM 328
Query: 244 VEK-----DIVVYNAMIEGYSIS-IETAR--KALEVHCQLIKNVFFEDVKLGSALVDMYA 295
+++ D+ V A+ + +E R L V L +N V + ++L+ MY
Sbjct: 329 LDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGLDRN-----VSVVNSLISMYC 383
Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
KC ++D A +F +Q + + +W +MI G+ +NG P AL F M+ V+P+ T++
Sbjct: 384 KCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVS 443
Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
++A + + I + R + + +VD+ + G++ A + + +M +
Sbjct: 444 VITAIAELSITHHAKWIHGVVMRS-CLDKNVFVTTALVDMYAKCGAIMIA-RLIFDMMSE 501
Query: 416 PNSDVWAALLSSCRLH 431
+ W A++ H
Sbjct: 502 RHVTTWNAMIDGYGTH 517
Score = 99.4 bits (246), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 130/267 (48%), Gaps = 19/267 (7%)
Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
R + + K + + T LV + + G A VF+ + K + +M+ GF
Sbjct: 54 RQILPLVFKNGLYQEHFFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKV 113
Query: 231 GFVEDAEEIFRKTVEKDI--VVYNAMIEGYSISI----ETARKALEVHCQLIKNVFFEDV 284
++ A + F + D+ VVYN Y + + R E+H L+K+ F D+
Sbjct: 114 SDLDKALQFFVRMRYDDVEPVVYNFT---YLLKVCGDEAELRVGKEIHGLLVKSGFSLDL 170
Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
+ L +MYAKC ++++AR+VFD M ++++ +W +++ GY +NG ALE+ M E
Sbjct: 171 FAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEE 230
Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA----CMVDLLGRAG 400
++P+++T + L A L+ G+EI Y+M+ + +VD+ + G
Sbjct: 231 NLKPSFITIVSVLPAVSALRLISVGKEI-----HGYAMRSGFDSLVNISTALVDMYAKCG 285
Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSS 427
SLE A + M E+ N W +++ +
Sbjct: 286 SLETARQLFDGMLER-NVVSWNSMIDA 311
>sp|Q9LYU9|PP378_ARATH Pentatricopeptide repeat-containing protein At5g13270,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2
SV=1
Length = 752
Score = 275 bits (704), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 150/447 (33%), Positives = 248/447 (55%), Gaps = 12/447 (2%)
Query: 52 LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL 111
L+ +N +G +IHAH+ + G+ NT+I ++ +++KCG L A ++FD++ +
Sbjct: 191 LKSLVNPRALDFGRQIHAHVIRAGLCSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKP 250
Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR 171
A ++ GY + G+ ++L L LV+ G D + FS++LKA C S L NLG+
Sbjct: 251 VACTGLMVGYTQAGRARDALKLFVDLVTEGVEWDSFVFSVVLKA---CASLEEL--NLGK 305
Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
+HA + K ++++ + T LVD Y+K A F + E N + +++ISG+
Sbjct: 306 QIHACVAKLGLESEVSVGTPLVDFYIKCSSFESACRAFQEIREPNDVSWSAIISGYCQMS 365
Query: 232 FVEDAEEIFRKTVEKDIVV-----YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
E+A + F+ K+ + Y ++ + S+ + +VH IK
Sbjct: 366 QFEEAVKTFKSLRSKNASILNSFTYTSIFQACSV-LADCNIGGQVHADAIKRSLIGSQYG 424
Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
SAL+ MY+KCG +DDA VF+ M ++ WT+ I G+ GN ++AL LF M C +
Sbjct: 425 ESALITMYSKCGCLDDANEVFESMDNPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGM 484
Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
+PN VTF+ L+AC HAGLV++G+ ++M R Y++ P ++HY CM+D+ R+G L++AL
Sbjct: 485 KPNSVTFIAVLTACSHAGLVEQGKHCLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEAL 544
Query: 407 KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
KF+ MP +P++ W LS C H ++E+ IA E+ +L+ D G YV N A
Sbjct: 545 KFMKNMPFEPDAMSWKCFLSGCWTHKNLELGEIAGEELRQLDPEDTAG-YVLPFNLYTWA 603
Query: 467 GKWDSVTELREKMKLRGVLKDTGCSWV 493
GKW+ E+ + M R + K+ CSW+
Sbjct: 604 GKWEEAAEMMKLMNERMLKKELSCSWI 630
Score = 124 bits (310), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/461 (22%), Positives = 203/461 (44%), Gaps = 55/461 (11%)
Query: 63 YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
+G +H + P+ + +L ++ +C +L+ A ++FDE+ + + MI+ Y
Sbjct: 101 HGRLLHDRMRMGIENPSVLLQNCVLQMYCECRSLEDADKLFDEMSELNAVSRTTMISAYA 160
Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
+ G +++++ L +++SG++P ++ +LK+ P + GR +HA +++ +
Sbjct: 161 EQGILDKAVGLFSGMLASGDKPPSSMYTTLLKSLV-----NPRALDFGRQIHAHVIRAGL 215
Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-- 240
++ + T +V+ YVK G A+ VFD M K + T ++ G+ G DA ++F
Sbjct: 216 CSNTSIETGIVNMYVKCGWLVGAKRVFDQMAVKKPVACTGLMVGYTQAGRARDALKLFVD 275
Query: 241 --RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
+ VE D V++ +++ + S+E ++H + K +V +G+ LVD Y KC
Sbjct: 276 LVTEGVEWDSFVFSVVLKACA-SLEELNLGKQIHACVAKLGLESEVSVGTPLVDFYIKCS 334
Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF-CMMQECCVQPNYVTFLGAL 357
+ A R F +++ N +W+++I GY + +A++ F + + N T+
Sbjct: 335 SFESACRAFQEIREPNDVSWSAIISGYCQMSQFEEAVKTFKSLRSKNASILNSFTYTSIF 394
Query: 358 SACG-----------HA------------------------GLVDKGREIFESMERDYSM 382
AC HA G +D E+FESM+
Sbjct: 395 QACSVLADCNIGGQVHADAIKRSLIGSQYGESALITMYSKCGCLDDANEVFESMD----- 449
Query: 383 KPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSCRLHDDVEMANI 439
P + + + G+ +AL+ +M KPNS + A+L++C VE
Sbjct: 450 NPDIVAWTAFISGHAYYGNASEALRLFEKMVSCGMKPNSVTFIAVLTACSHAGLVEQGKH 509
Query: 440 AANEIF-KLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
+ + K N Y + + A +G D + + M
Sbjct: 510 CLDTMLRKYNVAPTIDHYDCMIDIYARSGLLDEALKFMKNM 550
>sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2
SV=1
Length = 633
Score = 275 bits (704), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 157/513 (30%), Positives = 275/513 (53%), Gaps = 49/513 (9%)
Query: 29 FPPKL-------QNYDSLSNPLTATSLPSALQH-----------------YINSDTPFY- 63
FPP+L + +SL P++ S +L+ YI +D FY
Sbjct: 5 FPPRLLSQLKLSRRLNSLPAPVSEDSEDESLKFPSNDLLLRTSSNDLEGSYIPADRRFYN 64
Query: 64 --------------GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQR 109
G +HAHI ++ + + + LL ++ KCG+L+ A ++F+++PQR
Sbjct: 65 TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAKCGSLEEARKVFEKMPQR 124
Query: 110 TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL 169
+ +I+GY ++ + ++L +++ G P+ +T S ++KA+ R
Sbjct: 125 DFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGC-----C 179
Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMS 229
G +H +KC ++ + +AL+D Y + G A++VFD + +N + ++I+G
Sbjct: 180 GHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHAR 239
Query: 230 QGFVEDAEEIFRKTVEKDIVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
+ E A E+F+ + + A + G S + VH +IK+
Sbjct: 240 RSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFA 299
Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
G+ L+DMYAK G I DAR++FD + +++V +W S++ Y ++G +A+ F M+ +
Sbjct: 300 GNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGI 359
Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
+PN ++FL L+AC H+GL+D+G +E M++D + P+ HY +VDLLGRAG L +AL
Sbjct: 360 RPNEISFLSVLTACSHSGLLDEGWHYYELMKKD-GIVPEAWHYVTVVDLLGRAGDLNRAL 418
Query: 407 KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
+F+ EMP +P + +W ALL++CR+H + E+ AA +F+L+ +D PG +V L N A+
Sbjct: 419 RFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDD-PGPHVILYNIYASG 477
Query: 467 GKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
G+W+ +R+KMK GV K+ CSWV E+ +
Sbjct: 478 GRWNDAARVRKKMKESGVKKEPACSWVEIENAI 510
>sp|Q9M1V3|PP296_ARATH Pentatricopeptide repeat-containing protein At3g63370
OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2
Length = 960
Score = 275 bits (703), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 154/433 (35%), Positives = 242/433 (55%), Gaps = 10/433 (2%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G+++HA++ K G N + L+ ++ KC Y G+ F + + L ++ +IAGY +
Sbjct: 405 GMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQ 464
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
N E+L L R + D IL+AS+ +S + + + +H IL+ +
Sbjct: 465 NDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLIV-----KEIHCHILRKGL- 518
Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
D V+ LVD Y K YA VF+ + K+V+ TSMIS G +A E+FR+
Sbjct: 519 LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRM 578
Query: 244 VEKDIVVYNAM---IEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
VE + + I + S+ K E+HC L++ F + + A+VDMYA CG +
Sbjct: 579 VETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDL 638
Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
A+ VFD +++K + +TSMI+ YG +G A+ELF M+ V P++++FL L AC
Sbjct: 639 QSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYAC 698
Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
HAGL+D+GR + ME +Y ++P EHY C+VD+LGRA + +A +FV M +P ++V
Sbjct: 699 SHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEPTAEV 758
Query: 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480
W ALL++CR H + E+ IAA + +L + PG V +SN A G+W+ V ++R KMK
Sbjct: 759 WCALLAACRSHSEKEIGEIAAQRLLELEPKN-PGNLVLVSNVFAEQGRWNDVEKVRAKMK 817
Query: 481 LRGVLKDTGCSWV 493
G+ K GCSW+
Sbjct: 818 ASGMEKHPGCSWI 830
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 90/321 (28%), Positives = 155/321 (48%), Gaps = 23/321 (7%)
Query: 64 GLKIHAHITKTGVKPNTNISI---KLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120
G ++H+ I KT P+ + KL+ ++ KCG+L A ++FDE+P RT A+N MI
Sbjct: 99 GRQLHSRIFKTF--PSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGA 156
Query: 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180
Y+ NG+ +L+L + G +F +LKA R G +H+ ++K
Sbjct: 157 YVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACAKLRDIRS-----GSELHSLLVKL 211
Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK-NVICSTSMISGFMSQGFVEDAEEI 239
+ + ALV Y K S AR +FD EK + + S++S + + G + E+
Sbjct: 212 GYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLEL 271
Query: 240 FRKT-----VEKDIVVYNAMI--EGYSISIETARKALEVHCQLIKN-VFFEDVKLGSALV 291
FR+ + +A+ +G+S A+ E+H ++K+ ++ + +AL+
Sbjct: 272 FREMHMTGPAPNSYTIVSALTACDGFSY----AKLGKEIHASVLKSSTHSSELYVCNALI 327
Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
MY +CGK+ A R+ M +V TW S+I GY +N +ALE F M + + V
Sbjct: 328 AMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEV 387
Query: 352 TFLGALSACGHAGLVDKGREI 372
+ ++A G + G E+
Sbjct: 388 SMTSIIAASGRLSNLLAGMEL 408
Score = 89.4 bits (220), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 123/275 (44%), Gaps = 34/275 (12%)
Query: 170 GRMVHAQILKCDVKAD-DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM 228
GR +H++I K + D L LV Y K G A VFD M ++ +MI ++
Sbjct: 99 GRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYV 158
Query: 229 SQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIET-------------ARKALEVHCQL 275
S G A ++ +N +EG + + + R E+H L
Sbjct: 159 SNGEPASALALY----------WNMRVEGVPLGLSSFPALLKACAKLRDIRSGSELHSLL 208
Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNGNPNQA 334
+K + + +ALV MYAK + ARR+FD Q+K + W S++ Y +G +
Sbjct: 209 VKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLET 268
Query: 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC--M 392
LELF M PN T + AL+AC G+EI S+ + + ++ Y C +
Sbjct: 269 LELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSEL--YVCNAL 326
Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDV--WAALL 425
+ + R G + QA + + +M N+DV W +L+
Sbjct: 327 IAMYTRCGKMPQAERILRQM---NNADVVTWNSLI 358
Score = 78.2 bits (191), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/194 (28%), Positives = 89/194 (45%), Gaps = 20/194 (10%)
Query: 247 DIVVYNAMIEGYSISIETA--RKALEVHCQLIKNVF-----FEDVKLGSALVDMYAKCGK 299
D+ N+ +E ++ +E R+A+ QL +F FE L LV MY KCG
Sbjct: 72 DVSENNSPVEAFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGS 131
Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
+DDA +VFD M + F W +MI Y NG P AL L+ M+ V +F L A
Sbjct: 132 LDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKA 191
Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYA------CMVDLLGRAGSLEQALKFVLEMP 413
C + G E+ +S+ K+ +++ +V + + L A +
Sbjct: 192 CAKLRDIRSGSEL-------HSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQ 244
Query: 414 EKPNSDVWAALLSS 427
EK ++ +W ++LSS
Sbjct: 245 EKGDAVLWNSILSS 258
>sp|O23337|PP311_ARATH Pentatricopeptide repeat-containing protein At4g14820
OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1
Length = 722
Score = 275 bits (702), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 157/466 (33%), Positives = 244/466 (52%), Gaps = 40/466 (8%)
Query: 62 FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
F G+++H K + + + ++ CG + YA +FDE+ R + +N MI Y
Sbjct: 128 FEGMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRDVVTWNTMIERY 187
Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
+ G V+E+ L ++ S PD I+ S C R+ R ++ +++ D
Sbjct: 188 CRFGLVDEAFKLFEEMKDSNVMPDEMILCNIV--SACGRTG---NMRYNRAIYEFLIEND 242
Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
V+ D L TALV Y G AR F M +N+ ST+M+SG+ G ++DA+ IF
Sbjct: 243 VRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDDAQVIFD 302
Query: 242 KTVEKDIVVYNAMIEGYSIS---IETARKALEVHCQLIK--------------------- 277
+T +KD+V + MI Y S E R E+ C IK
Sbjct: 303 QTEKKDLVCWTTMISAYVESDYPQEALRVFEEMCCSGIKPDVVSMFSVISACANLGILDK 362
Query: 278 ----------NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
N ++ + +AL++MYAKCG +D R VF+ M ++NV +W+SMI+
Sbjct: 363 AKWVHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSM 422
Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
+G + AL LF M++ V+PN VTF+G L C H+GLV++G++IF SM +Y++ PK+E
Sbjct: 423 HGEASDALSLFARMKQENVEPNEVTFVGVLYGCSHSGLVEEGKKIFASMTDEYNITPKLE 482
Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
HY CMVDL GRA L +AL+ + MP N +W +L+S+CR+H ++E+ AA I +L
Sbjct: 483 HYGCMVDLFGRANLLREALEVIESMPVASNVVIWGSLMSACRIHGELELGKFAAKRILEL 542
Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
D GA V +SN A +W+ V +R M+ + V K+ G S +
Sbjct: 543 EP-DHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRI 587
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 90/433 (20%), Positives = 201/433 (46%), Gaps = 46/433 (10%)
Query: 38 SLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALK 97
+L P+ +T+ + L+ + + ++HAHI +T + N + L + L
Sbjct: 2 TLPPPIASTAANTILEKLSFCKSLNHIKQLHAHILRTVINHKLNSFLFNLSVSSSSINLS 61
Query: 98 YAGQMFDELPQRTLS-AYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAS 156
YA +F +P S +N + ++ + ++ +++ G R D ++F ILKA
Sbjct: 62 YALNVFSSIPSPPESIVFNPFLRDLSRSSEPRATILFYQRIRHVGGRLDQFSFLPILKAV 121
Query: 157 TCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216
+ + G +H K D + T +D Y G+ +YAR VFD M ++
Sbjct: 122 SKVSALFE-----GMELHGVAFKIATLCDPFVETGFMDMYASCGRINYARNVFDEMSHRD 176
Query: 217 VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIV------------------------VYN 252
V+ +MI + G V++A ++F + + +++ +Y
Sbjct: 177 VVTWNTMIERYCRFGLVDEAFKLFEEMKDSNVMPDEMILCNIVSACGRTGNMRYNRAIYE 236
Query: 253 AMIEG----------YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
+IE +++ +++ + + + ++ + +A+V Y+KCG++DD
Sbjct: 237 FLIENDVRMDTHLLTALVTMYAGAGCMDMAREFFRKMSVRNLFVSTAMVSGYSKCGRLDD 296
Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC--VQPNYVTFLGALSAC 360
A+ +FD ++K++ WT+MI Y ++ P +AL +F M CC ++P+ V+ +SAC
Sbjct: 297 AQVIFDQTEKKDLVCWTTMISAYVESDYPQEALRVFEEM--CCSGIKPDVVSMFSVISAC 354
Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV 420
+ G++DK + + + + ++ ++ ++++ + G L+ +MP + N
Sbjct: 355 ANLGILDKAKWVHSCIHVN-GLESELSINNALINMYAKCGGLDATRDVFEKMPRR-NVVS 412
Query: 421 WAALLSSCRLHDD 433
W++++++ +H +
Sbjct: 413 WSSMINALSMHGE 425
Score = 52.0 bits (123), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 113/267 (42%), Gaps = 44/267 (16%)
Query: 67 IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
+H+ I G++ +I+ L+ ++ KCG L +F+++P+R + +++ MI +G+
Sbjct: 366 VHSCIHVNGLESELSINNALINMYAKCGGLDATRDVFEKMPRRNVVSWSSMINALSMHGE 425
Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
++LSL ++ P+ TF +L C S + V+
Sbjct: 426 ASDALSLFARMKQENVEPNEVTFVGVLYG--CSHSGL------------------VEEGK 465
Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
++ ++ D Y K + + D+ N++ E E I V
Sbjct: 466 KIFASMTDEYNITPKLEHYGCMVDLFGRANLL--------------REALEVIESMPVAS 511
Query: 247 DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALV---DMYAKCGKIDDA 303
++V++ +++ I E LE+ K + + ALV ++YA+ + +D
Sbjct: 512 NVVIWGSLMSACRIHGE-----LELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDV 566
Query: 304 RRVFDHMQQKNVFTWT--SMIDGYGKN 328
R + M++KNVF S ID GK+
Sbjct: 567 RNIRRVMEEKNVFKEKGLSRIDQNGKS 593
>sp|Q9FFG8|PP417_ARATH Pentatricopeptide repeat-containing protein At5g44230
OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1
Length = 657
Score = 274 bits (700), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 174/505 (34%), Positives = 270/505 (53%), Gaps = 52/505 (10%)
Query: 36 YDSLSN--PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKC 93
+ +SN L +SL S L IN + +IH H+ + G+ + I KL+ K
Sbjct: 38 FSEISNQKELLVSSLISKLDDCINLNQI---KQIHGHVLRKGLDQSCYILTKLIRTLTKL 94
Query: 94 GAL--KYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
G YA ++ + + R + +I GY G+ +E++++ + P +TFS
Sbjct: 95 GVPMDPYARRVIEPVQFRNPFLWTAVIRGYAIEGKFDEAIAMYGCMRKEEITPVSFTFSA 154
Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
+LKA C + L NLGR HAQ + + ++D YVK AR VFD
Sbjct: 155 LLKA---CGTMKDL--NLGRQFHAQTFRLRGFCFVYVGNTMIDMYVKCESIDCARKVFDE 209
Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV 271
M E++VI T +I+ + G +E A E+F KD+V + AM+ G++ + + ++ALE
Sbjct: 210 MPERDVISWTELIAAYARVGNMECAAELFESLPTKDMVAWTAMVTGFAQNAK-PQEALEY 268
Query: 272 HCQLIKNVFFED-------------------------------------VKLGSALVDMY 294
++ K+ D V +GSAL+DMY
Sbjct: 269 FDRMEKSGIRADEVTVAGYISACAQLGASKYADRAVQIAQKSGYSPSDHVVIGSALIDMY 328
Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF-CMMQECCVQPNYVTF 353
+KCG +++A VF M KNVFT++SMI G +G +AL LF M+ + ++PN VTF
Sbjct: 329 SKCGNVEEAVNVFMSMNNKNVFTYSSMILGLATHGRAQEALHLFHYMVTQTEIKPNTVTF 388
Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
+GAL AC H+GLVD+GR++F+SM + + ++P +HY CMVDLLGR G L++AL+ + M
Sbjct: 389 VGALMACSHSGLVDQGRQVFDSMYQTFGVQPTRDHYTCMVDLLGRTGRLQEALELIKTMS 448
Query: 414 EKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473
+P+ VW ALL +CR+H++ E+A IAA +F+L D G Y+ LSN A+AG W V
Sbjct: 449 VEPHGGVWGALLGACRIHNNPEIAEIAAEHLFELEP-DIIGNYILLSNVYASAGDWGGVL 507
Query: 474 ELREKMKLRGVLKDTGCSWVGTESG 498
+R+ +K +G+ K SWV ++G
Sbjct: 508 RVRKLIKEKGLKKTPAVSWVVDKNG 532
>sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2
SV=1
Length = 738
Score = 273 bits (698), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/463 (32%), Positives = 251/463 (54%), Gaps = 41/463 (8%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G +H K+ V + ++ L+ + CG L A ++F + ++ + ++N MI G+++
Sbjct: 150 GQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVFTTIKEKDVVSWNSMINGFVQ 209
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
G +++L L +K+ S + T +L A R+ GR V + I + V
Sbjct: 210 KGSPDKALELFKKMESEDVKASHVTMVGVLSACAKIRN-----LEFGRQVCSYIEENRVN 264
Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
+ L A++D Y K G A+ +FD M EK+ + T+M+ G+ E A E+
Sbjct: 265 VNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSM 324
Query: 244 VEKDIVVYNAMIEGY-------------------------------SISIETARKALE-- 270
+KDIV +NA+I Y ++S ALE
Sbjct: 325 PQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELG 384
Query: 271 --VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKN 328
+H + K+ + + SAL+ MY+KCG ++ +R VF+ +++++VF W++MI G +
Sbjct: 385 RWIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMH 444
Query: 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH 388
G N+A+++F MQE V+PN VTF AC H GLVD+ +F ME +Y + P+ +H
Sbjct: 445 GCGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKH 504
Query: 389 YACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448
YAC+VD+LGR+G LE+A+KF+ MP P++ VW ALL +C++H ++ +A +A + +L
Sbjct: 505 YACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELE 564
Query: 449 ANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
+ GA+V LSN A GKW++V+ELR+ M++ G+ K+ GCS
Sbjct: 565 PRN-DGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCS 606
Score = 157 bits (398), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 128/478 (26%), Positives = 223/478 (46%), Gaps = 53/478 (11%)
Query: 30 PPKLQNYDSLSNPLTATSLPSALQH--YINSDTPFYGLK-IHAHITKTGVKPNTNISIKL 86
P L + + SNP T+ +H I LK H H+ +TG + + KL
Sbjct: 9 PLSLPRHPNFSNPNQPTTNNERSRHISLIERCVSLRQLKQTHGHMIRTGTFSDPYSASKL 68
Query: 87 LILHL--KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE-R 143
+ +L+YA ++FDE+P+ A+N +I Y S+ +VS +
Sbjct: 69 FAMAALSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCY 128
Query: 144 PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTS 203
P+ YTF ++KA+ S +LG+ +H +K V +D + +L+ Y G
Sbjct: 129 PNKYTFPFLIKAAAEVSS-----LSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLD 183
Query: 204 YARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIE 263
A VF + EK+V+ SMI+GF+ +G + A E+F+K +D+ + + G +
Sbjct: 184 SACKVFTTIKEKDVVSWNSMINGFVQKGSPDKALELFKKMESEDVKASHVTMVGVLSACA 243
Query: 264 TARK---ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
R +V + +N ++ L +A++DMY KCG I+DA+R+FD M++K+ TWT+
Sbjct: 244 KIRNLEFGRQVCSYIEENRVNVNLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTT 303
Query: 321 MIDGYG-------------------------------KNGNPNQALELFCMMQ-ECCVQP 348
M+DGY +NG PN+AL +F +Q + ++
Sbjct: 304 MLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKL 363
Query: 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKF 408
N +T + LSAC G ++ GR I S + + ++ + ++ + + G LE++ +
Sbjct: 364 NQITLVSTLSACAQVGALELGRWI-HSYIKKHGIRMNFHVTSALIHMYSKCGDLEKS-RE 421
Query: 409 VLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN-ANDRPGAYVALSNTLAA 465
V EK + VW+A++ +H N A + +K+ AN +P V +N A
Sbjct: 422 VFNSVEKRDVFVWSAMIGGLAMHG---CGNEAVDMFYKMQEANVKPNG-VTFTNVFCA 475
>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2
SV=1
Length = 871
Score = 271 bits (692), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 147/434 (33%), Positives = 237/434 (54%), Gaps = 10/434 (2%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G +H+ K LL ++ KCG L A +F E+ R++ +Y MIAGY +
Sbjct: 315 GRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAR 374
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
G E++ L ++ G PD YT + +L CC L G+ VH I + D+
Sbjct: 375 EGLAGEAVKLFEEMEEEGISPDVYTVTAVL---NCCARYRLLDE--GKRVHEWIKENDLG 429
Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
D + AL+D Y K G A +VF M K++I ++I G+ + +A +F
Sbjct: 430 FDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLL 489
Query: 244 VEKDIVVYN----AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
+E+ + A + S+ K E+H +++N +F D + ++LVDMYAKCG
Sbjct: 490 LEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGA 549
Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
+ A +FD + K++ +WT MI GYG +G +A+ LF M++ ++ + ++F+ L A
Sbjct: 550 LLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYA 609
Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
C H+GLVD+G F M + ++P +EHYAC+VD+L R G L +A +F+ MP P++
Sbjct: 610 CSHSGLVDEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDAT 669
Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
+W ALL CR+H DV++A A ++F+L + G YV ++N A A KW+ V LR+++
Sbjct: 670 IWGALLCGCRIHHDVKLAEKVAEKVFELEPEN-TGYYVLMANIYAEAEKWEQVKRLRKRI 728
Query: 480 KLRGVLKDTGCSWV 493
RG+ K+ GCSW+
Sbjct: 729 GQRGLRKNPGCSWI 742
Score = 163 bits (412), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 113/376 (30%), Positives = 192/376 (51%), Gaps = 17/376 (4%)
Query: 47 SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
+L S LQ +S + G ++ I G ++N+ KL +++ CG LK A ++FDE+
Sbjct: 96 TLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEV 155
Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
+N ++ K+G S+ L +K++SSG D YTFS + K+ + RS
Sbjct: 156 KIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRS----- 210
Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
+ G +H ILK + + +LV Y+K + AR VFD M E++VI S+I+G
Sbjct: 211 VHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIING 270
Query: 227 FMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSIS--IETARKALEVHCQLIKNVF 280
++S G E +F + +E D+ ++ G + S I R VH +K F
Sbjct: 271 YVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRA---VHSIGVKACF 327
Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
+ + + L+DMY+KCG +D A+ VF M ++V ++TSMI GY + G +A++LF
Sbjct: 328 SREDRFCNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEE 387
Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM-ERDYSMKPKMEHYACMVDLLGRA 399
M+E + P+ T L+ C L+D+G+ + E + E D + + ++D+ +
Sbjct: 388 MEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSN--ALMDMYAKC 445
Query: 400 GSLEQALKFVLEMPEK 415
GS+++A EM K
Sbjct: 446 GSMQEAELVFSEMRVK 461
Score = 79.0 bits (193), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 71/312 (22%), Positives = 139/312 (44%), Gaps = 13/312 (4%)
Query: 109 RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRN 168
R+++ N + + ++G +E ++ L+ VS D T +L+ C + L
Sbjct: 59 RSVTDANTQLRRFCESGNLENAVKLL--CVSGKWDIDPRTLCSVLQL---CADSKSLKD- 112
Query: 169 LGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM 228
G+ V I D L + L Y G A VFD + + + +++
Sbjct: 113 -GKEVDNFIRGNGFVIDSNLGSKLSLMYTNCGDLKEASRVFDEVKIEKALFWNILMNELA 171
Query: 229 SQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDV 284
G + +F+K VE D ++ + + +S S+ + ++H ++K+ F E
Sbjct: 172 KSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFS-SLRSVHGGEQLHGFILKSGFGERN 230
Query: 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344
+G++LV Y K ++D AR+VFD M +++V +W S+I+GY NG + L +F M
Sbjct: 231 SVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVS 290
Query: 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQ 404
++ + T + + C + L+ GR + S+ + ++D+ + G L+
Sbjct: 291 GIEIDLATIVSVFAGCADSRLISLGRAV-HSIGVKACFSREDRFCNTLLDMYSKCGDLDS 349
Query: 405 ALKFVLEMPEKP 416
A EM ++
Sbjct: 350 AKAVFREMSDRS 361
>sp|Q9LUJ2|PP249_ARATH Pentatricopeptide repeat-containing protein At3g22690
OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1
Length = 842
Score = 270 bits (690), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 160/466 (34%), Positives = 258/466 (55%), Gaps = 47/466 (10%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G K++A I +G++ N + L+ +++KC A+ A ++FDE L N M + Y++
Sbjct: 255 GEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMASNYVR 314
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL--GRMVHAQILKCD 181
G E+L + ++ SG RPD SM+ S+C + RN+ G+ H +L+
Sbjct: 315 QGLTREALGVFNLMMDSGVRPD--RISMLSAISSCSQ-----LRNILWGKSCHGYVLRNG 367
Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
++ D + AL+D Y+K + A +FD M K V+ S+++G++ G V+ A E F
Sbjct: 368 FESWDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFE 427
Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALEVHCQLI------------------------- 276
EK+IV +N +I G + +A+EV C +
Sbjct: 428 TMPEKNIVSWNTIISGL-VQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGAL 486
Query: 277 -----------KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
KN DV+LG+ LVDM+++CG + A +F+ + ++V WT+ I
Sbjct: 487 DLAKWIYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESAMSIFNSLTNRDVSAWTAAIGAM 546
Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
GN +A+ELF M E ++P+ V F+GAL+AC H GLV +G+EIF SM + + + P+
Sbjct: 547 AMAGNAERAIELFDDMIEQGLKPDGVAFVGALTACSHGGLVQQGKEIFYSMLKLHGVSPE 606
Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIF 445
HY CMVDLLGRAG LE+A++ + +MP +PN +W +LL++CR+ +VEMA AA +I
Sbjct: 607 DVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPNDVIWNSLLAACRVQGNVEMAAYAAEKI- 665
Query: 446 KLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
++ A +R G+YV LSN A+AG+W+ + ++R MK +G+ K G S
Sbjct: 666 QVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTS 711
Score = 138 bits (347), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 103/396 (26%), Positives = 178/396 (44%), Gaps = 42/396 (10%)
Query: 47 SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
+ P L S G++IH I K G + + L+ + +CG L A ++FDE+
Sbjct: 136 TFPFGLSACAKSRAKGNGIQIHGLIVKMGYAKDLFVQNSLVHFYAECGELDSARKVFDEM 195
Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPL 165
+R + ++ MI GY + ++++ L ++V E P+ T M+ S C +
Sbjct: 196 SERNVVSWTSMICGYARRDFAKDAVDLFFRMVRDEEVTPNSVT--MVCVISACAKLE--- 250
Query: 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMIS 225
G V+A I ++ +D++ +ALVD Y+K A+ +FD N+ +M S
Sbjct: 251 DLETGEKVYAFIRNSGIEVNDLMVSALVDMYMKCNAIDVAKRLFDEYGASNLDLCNAMAS 310
Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL---EVHCQLIKNVFFE 282
++ QG +A +F ++ + + S R L H +++N F
Sbjct: 311 NYVRQGLTREALGVFNLMMDSGVRPDRISMLSAISSCSQLRNILWGKSCHGYVLRNGFES 370
Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPN---------- 332
+ +AL+DMY KC + D A R+FD M K V TW S++ GY +NG +
Sbjct: 371 WDNICNALIDMYMKCHRQDTAFRIFDRMSNKTVVTWNSIVAGYVENGEVDAAWETFETMP 430
Query: 333 ---------------------QALELFCMMQ-ECCVQPNYVTFLGALSACGHAGLVDKGR 370
+A+E+FC MQ + V + VT + SACGH G +D +
Sbjct: 431 EKNIVSWNTIISGLVQGSLFEEAIEVFCSMQSQEGVNADGVTMMSIASACGHLGALDLAK 490
Query: 371 EIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQAL 406
I+ +E++ ++ + +VD+ R G E A+
Sbjct: 491 WIYYYIEKN-GIQLDVRLGTTLVDMFSRCGDPESAM 525
Score = 133 bits (335), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 97/308 (31%), Positives = 154/308 (50%), Gaps = 21/308 (6%)
Query: 67 IHAHITKTGVKPNTNISIKLLILHLKCG---ALKYAGQMFDELPQR-TLSAYNYMIAGYL 122
H +TK G+ + + KL+ + G +L +A ++F+ T YN +I GY
Sbjct: 51 FHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENSESYGTCFMYNSLIRGYA 110
Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
+G E++ L ++++SG PD YTF L A C +S + G +H I+K
Sbjct: 111 SSGLCNEAILLFLRMMNSGISPDKYTFPFGLSA--CAKSR---AKGNGIQIHGLIVKMGY 165
Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
D + +LV Y + G+ AR VFD M E+NV+ TSMI G+ + F +DA ++F +
Sbjct: 166 AKDLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFR 225
Query: 243 TVEKDIVVYNAMIEGYSIS-------IETARKALEVHCQLIKNVFFE-DVKLGSALVDMY 294
V + V N++ IS +ET K I+N E + + SALVDMY
Sbjct: 226 MVRDEEVTPNSVTMVCVISACAKLEDLETGEKVY----AFIRNSGIEVNDLMVSALVDMY 281
Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
KC ID A+R+FD N+ +M Y + G +AL +F +M + V+P+ ++ L
Sbjct: 282 MKCNAIDVAKRLFDEYGASNLDLCNAMASNYVRQGLTREALGVFNLMMDSGVRPDRISML 341
Query: 355 GALSACGH 362
A+S+C
Sbjct: 342 SAISSCSQ 349
Score = 85.9 bits (211), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 126/250 (50%), Gaps = 11/250 (4%)
Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGG---KTSYARIVFDMMLEKNVIC--STSMIS 225
+M H + K + D T LV + G S+A+ VF+ E C S+I
Sbjct: 49 KMFHRSLTKQGLDNDVSTITKLVARSCELGTRESLSFAKEVFENS-ESYGTCFMYNSLIR 107
Query: 226 GFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE-GYSISIETARKA--LEVHCQLIKNVFFE 282
G+ S G +A +F + + I G S ++ K +++H ++K + +
Sbjct: 108 GYASSGLCNEAILLFLRMMNSGISPDKYTFPFGLSACAKSRAKGNGIQIHGLIVKMGYAK 167
Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC-MM 341
D+ + ++LV YA+CG++D AR+VFD M ++NV +WTSMI GY + A++LF M+
Sbjct: 168 DLFVQNSLVHFYAECGELDSARKVFDEMSERNVVSWTSMICGYARRDFAKDAVDLFFRMV 227
Query: 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGS 401
++ V PN VT + +SAC ++ G +++ + R+ ++ + +VD+ + +
Sbjct: 228 RDEEVTPNSVTMVCVISACAKLEDLETGEKVY-AFIRNSGIEVNDLMVSALVDMYMKCNA 286
Query: 402 LEQALKFVLE 411
++ A + E
Sbjct: 287 IDVAKRLFDE 296
Score = 58.9 bits (141), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 93/199 (46%), Gaps = 10/199 (5%)
Query: 40 SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYA 99
++ +T S+ SA H D + I+ +I K G++ + + L+ + +CG + A
Sbjct: 468 ADGVTMMSIASACGHLGALDLAKW---IYYYIEKNGIQLDVRLGTTLVDMFSRCGDPESA 524
Query: 100 GQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCC 159
+F+ L R +SA+ I G E ++ L ++ G +PDG F + A T C
Sbjct: 525 MSIFNSLTNRDVSAWTAAIGAMAMAGNAERAIELFDDMIEQGLKPDGVAF---VGALTAC 581
Query: 160 RSNVPLPRNLGRMVHAQILKC-DVKADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEKNV 217
+ + G+ + +LK V +DV Y +VD + G A +++ DM +E N
Sbjct: 582 SHGGLVQQ--GKEIFYSMLKLHGVSPEDVHYGCMVDLLGRAGLLEEAVQLIEDMPMEPND 639
Query: 218 ICSTSMISGFMSQGFVEDA 236
+ S+++ QG VE A
Sbjct: 640 VIWNSLLAACRVQGNVEMA 658
>sp|Q9SUH6|PP341_ARATH Pentatricopeptide repeat-containing protein At4g30700
OS=Arabidopsis thaliana GN=DYW9 PE=2 SV=1
Length = 792
Score = 268 bits (686), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 165/437 (37%), Positives = 242/437 (55%), Gaps = 20/437 (4%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G++IH+ TKTG + + + L+ KCG +K +F E + + AYN MI GY
Sbjct: 240 GMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTS 299
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRM--VHAQILKCD 181
NG+ E SLSL ++L+ SG R L++ST S VP+ +L + +H LK +
Sbjct: 300 NGETELSLSLFKELMLSGAR---------LRSSTLV-SLVPVSGHLMLIYAIHGYCLKSN 349
Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
+ + TAL Y K + AR +FD EK++ +MISG+ G EDA +FR
Sbjct: 350 FLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFR 409
Query: 242 KTVEKDIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFED-VKLGSALVDMYAK 296
+ ++K N + +S AL VH L+++ FE + + +AL+ MYAK
Sbjct: 410 E-MQKSEFSPNPVTITCILSACAQLGALSLGKWVH-DLVRSTDFESSIYVSTALIGMYAK 467
Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
CG I +ARR+FD M +KN TW +MI GYG +G +AL +F M + P VTFL
Sbjct: 468 CGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCV 527
Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
L AC HAGLV +G EIF SM Y +P ++HYACMVD+LGRAG L++AL+F+ M +P
Sbjct: 528 LYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEP 587
Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
S VW LL +CR+H D +A + ++F+L+ D G +V LSN +A + +R
Sbjct: 588 GSSVWETLLGACRIHKDTNLARTVSEKLFELDP-DNVGYHVLLSNIHSADRNYPQAATVR 646
Query: 477 EKMKLRGVLKDTGCSWV 493
+ K R + K G + +
Sbjct: 647 QTAKKRKLAKAPGYTLI 663
Score = 129 bits (323), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 93/375 (24%), Positives = 171/375 (45%), Gaps = 20/375 (5%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G IH G + ++ ++ K ++ A ++FD +P++ +N MI+GY K
Sbjct: 138 GRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRK 197
Query: 124 NGQVEESLSLVRKLVS-SGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
N ES+ + R L++ S R D T IL A + LG +H+ K
Sbjct: 198 NEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQE-----LRLGMQIHSLATKTGC 252
Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
+ D + T + Y K GK +F + +++ +MI G+ S G E + +F++
Sbjct: 253 YSHDYVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKE 312
Query: 243 ------TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
+ +V + G+ + I +H +K+ F + +AL +Y+K
Sbjct: 313 LMLSGARLRSSTLVSLVPVSGHLMLI------YAIHGYCLKSNFLSHASVSTALTTVYSK 366
Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
+I+ AR++FD +K++ +W +MI GY +NG A+ LF MQ+ PN VT
Sbjct: 367 LNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCI 426
Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
LSAC G + G+ + + + R + + ++ + + GS+ +A + + ++ K
Sbjct: 427 LSACAQLGALSLGKWVHD-LVRSTDFESSIYVSTALIGMYAKCGSIAEARR-LFDLMTKK 484
Query: 417 NSDVWAALLSSCRLH 431
N W ++S LH
Sbjct: 485 NEVTWNTMISGYGLH 499
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 83/370 (22%), Positives = 158/370 (42%), Gaps = 23/370 (6%)
Query: 66 KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
+ HA I G + + ++ KL GA+ YA +F + + + +N ++ G+ N
Sbjct: 38 QTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNE 97
Query: 126 QVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKA 184
SLS+ L S + +P+ T++ + A++ R + GR++H Q + +
Sbjct: 98 SPHSSLSVFAHLRKSTDLKPNSSTYAFAISAASGFRDD-----RAGRVIHGQAVVDGCDS 152
Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244
+ +L + +V Y K + AR VFD M EK+ I +MISG+ ++ ++FR +
Sbjct: 153 ELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLI 212
Query: 245 EKDIVVYNAM----IEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300
+ + I ++ R +++H K + + + + +Y+KCGKI
Sbjct: 213 NESCTRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKI 272
Query: 301 DDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360
+F ++ ++ + +MI GY NG +L LF + + T + +
Sbjct: 273 KMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVS 332
Query: 361 GHAGLVDKGREIFESMERDYSMKPKMEHYA----CMVDLLGRAGSLEQALKFVLEMPEKP 416
GH L+ Y +K +A + + + +E A K E PEK
Sbjct: 333 GHLMLI--------YAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKS 384
Query: 417 NSDVWAALLS 426
W A++S
Sbjct: 385 LPS-WNAMIS 393
>sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520
OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1
Length = 620
Score = 268 bits (684), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 158/469 (33%), Positives = 250/469 (53%), Gaps = 45/469 (9%)
Query: 66 KIHAHITKTGVKPNTNISIKLLILHLKCGA---LKYAGQMFDELPQRTLSAYNYMIAGYL 122
+IHA + KTG+ ++ K L + + L YA +FD + +N MI G+
Sbjct: 32 QIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVFDGFDRPDTFLWNLMIRGFS 91
Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
+ + E SL L ++++ S + YTF +LKA SN+ + +HAQI K
Sbjct: 92 CSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKAC----SNLSAFEETTQ-IHAQITKLGY 146
Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
+ D +L++SY G A ++FD + E + + S+I G++ G ++ A +FRK
Sbjct: 147 ENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRK 206
Query: 243 TVEKDIVVYNAMIEGYSISIETARKALE-------------------------------- 270
EK+ + + MI GY + + ++AL+
Sbjct: 207 MAEKNAISWTTMISGY-VQADMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQ 265
Query: 271 ---VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGK 327
+H L K D LG L+DMYAKCG++++A VF ++++K+V WT++I GY
Sbjct: 266 GKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAY 325
Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
+G+ +A+ F MQ+ ++PN +TF L+AC + GLV++G+ IF SMERDY++KP +E
Sbjct: 326 HGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIE 385
Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447
HY C+VDLLGRAG L++A +F+ EMP KPN+ +W ALL +CR+H ++E+ + +
Sbjct: 386 HYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAI 445
Query: 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
+ G YV +N A KWD E R MK +GV K GCS + E
Sbjct: 446 DPY-HGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLE 493
Score = 81.3 bits (199), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 75/314 (23%), Positives = 138/314 (43%), Gaps = 31/314 (9%)
Query: 40 SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYA 99
S P A + PS L+ N +IHA ITK G + + L+ + G K A
Sbjct: 110 SAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLA 169
Query: 100 GQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL-----VSSGERPDGYTFSMI-- 152
+FD +P+ ++N +I GY+K G+++ +L+L RK+ +S GY + +
Sbjct: 170 HLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNK 229
Query: 153 --------LKASTCCRSNVPLPRNL-----------GRMVHAQILKCDVKADDVLYTALV 193
++ S NV L L G+ +H+ + K ++ D VL L+
Sbjct: 230 EALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLI 289
Query: 194 DSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEIFRKTVEKDIV 249
D Y K G+ A VF + +K+V T++ISG+ G +A E+ + ++ +++
Sbjct: 290 DMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVI 349
Query: 250 VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDH 309
+ A++ S + L + ++ +VD+ + G +D+A+R
Sbjct: 350 TFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQE 409
Query: 310 MQQK-NVFTWTSMI 322
M K N W +++
Sbjct: 410 MPLKPNAVIWGALL 423
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 104/215 (48%), Gaps = 20/215 (9%)
Query: 32 KLQNYD------SLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIK 85
++QN D SL+N L+A + AL+ G IH+++ KT ++ ++ +
Sbjct: 237 EMQNSDVEPDNVSLANALSACAQLGALEQ---------GKWIHSYLNKTRIRMDSVLGCV 287
Query: 86 LLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD 145
L+ ++ KCG ++ A ++F + ++++ A+ +I+GY +G E++S ++ G +P+
Sbjct: 288 LIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPN 347
Query: 146 GYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA 205
TF+ +L T C S L + ++ ++K Y +VD + G A
Sbjct: 348 VITFTAVL---TAC-SYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEA 403
Query: 206 -RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
R + +M L+ N + +++ +E EEI
Sbjct: 404 KRFIQEMPLKPNAVIWGALLKACRIHKNIELGEEI 438
>sp|O22137|PP202_ARATH Pentatricopeptide repeat-containing protein At2g45350,
chloroplastic OS=Arabidopsis thaliana GN=CRR4 PE=3 SV=2
Length = 613
Score = 268 bits (684), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/473 (31%), Positives = 244/473 (51%), Gaps = 62/473 (13%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G++IH + KTG+ + + L+ L+LKCG L + QMFD +P+R +YN MI GY+K
Sbjct: 140 GMQIHGFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVK 199
Query: 124 NGQVEESLSL-------VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQ 176
G + + L ++ L+S GY A T ++ A
Sbjct: 200 CGLIVSARELFDLMPMEMKNLISWNSMISGY-------AQTSDGVDI-----------AS 241
Query: 177 ILKCDVKADDVL-YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVED 235
L D+ D++ + +++D YVK G+ A+ +FD+M ++V+ +MI G+ GFV
Sbjct: 242 KLFADMPEKDLISWNSMIDGYVKHGRIEDAKGLFDVMPRRDVVTWATMIDGYAKLGFVHH 301
Query: 236 AEEIFRKTVEKDIVVYNAMIEGYS-----------------------------------I 260
A+ +F + +D+V YN+M+ GY
Sbjct: 302 AKTLFDQMPHRDVVAYNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIA 361
Query: 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320
+ KA+++H +++ F+ KLG AL+DMY+KCG I A VF+ ++ K++ W +
Sbjct: 362 QLGRLSKAIDMHLYIVEKQFYLGGKLGVALIDMYSKCGSIQHAMLVFEGIENKSIDHWNA 421
Query: 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY 380
MI G +G A ++ ++ ++P+ +TF+G L+AC H+GLV +G FE M R +
Sbjct: 422 MIGGLAIHGLGESAFDMLLQIERLSLKPDDITFVGVLNACSHSGLVKEGLLCFELMRRKH 481
Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIA 440
++P+++HY CMVD+L R+GS+E A + EMP +PN +W L++C H + E +
Sbjct: 482 KIEPRLQHYGCMVDILSRSGSIELAKNLIEEMPVEPNDVIWRTFLTACSHHKEFETGELV 541
Query: 441 ANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
A + L A P +YV LSN A+ G W V +R MK R + K GCSW+
Sbjct: 542 AKHLI-LQAGYNPSSYVLLSNMYASFGMWKDVRRVRTMMKERKIEKIPGCSWI 593
Score = 115 bits (289), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 125/482 (25%), Positives = 218/482 (45%), Gaps = 76/482 (15%)
Query: 66 KIHAHITKTGVKPNTNISIKLLILHLKCG---ALKYAGQMFDELPQRTLS--------AY 114
+IH + KTG+ N+N++ ++++ +A +F E + S +
Sbjct: 30 QIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEYHVCSFSFGEVEDPFLW 89
Query: 115 NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH 174
N +I + ++L L+ ++ +G D ++ S++LKA C R G +H
Sbjct: 90 NAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKA--CSRLGFV---KGGMQIH 144
Query: 175 AQI-------------------LKCDV------------KADDVLYTALVDSYVKGGKTS 203
+ LKC K D V Y +++D YVK G
Sbjct: 145 GFLKKTGLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKRDSVSYNSMIDGYVKCGLIV 204
Query: 204 YARIVFDMM-LE-KNVICSTSMISGF--MSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY- 258
AR +FD+M +E KN+I SMISG+ S G V+ A ++F EKD++ +N+MI+GY
Sbjct: 205 SARELFDLMPMEMKNLISWNSMISGYAQTSDG-VDIASKLFADMPEKDLISWNSMIDGYV 263
Query: 259 -SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT 317
IE A+ +V + DV + ++D YAK G + A+ +FD M ++V
Sbjct: 264 KHGRIEDAKGLFDVMPR-------RDVVTWATMIDGYAKLGFVHHAKTLFDQMPHRDVVA 316
Query: 318 WTSMIDGYGKNGNPNQALELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREI-FES 375
+ SM+ GY +N +ALE+F M +E + P+ T + L A G + K ++
Sbjct: 317 YNSMMAGYVQNKYHMEALEIFSDMEKESHLLPDDTTLVIVLPAIAQLGRLSKAIDMHLYI 376
Query: 376 MERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVE 435
+E+ + + K+ ++D+ + GS++ A+ V E E + D W A++ +H E
Sbjct: 377 VEKQFYLGGKLG--VALIDMYSKCGSIQHAM-LVFEGIENKSIDHWNAMIGGLAIHGLGE 433
Query: 436 MANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE-------LREKMKLRGVLKDT 488
A +I +L+ +V + N + +G V E +R K K+ L+
Sbjct: 434 SAFDMLLQIERLSLKPDDITFVGVLNACSHSGL---VKEGLLCFELMRRKHKIEPRLQHY 490
Query: 489 GC 490
GC
Sbjct: 491 GC 492
Score = 36.6 bits (83), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 73/166 (43%), Gaps = 12/166 (7%)
Query: 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK---IDDARRVFDHM------- 310
S +T+ ++H +LIK ++ L + +V +A + D AR VF
Sbjct: 21 SCKTSDDVNQIHGRLIKTGIIKNSNLTTRIVLAFASSRRPYLADFARCVFHEYHVCSFSF 80
Query: 311 -QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKG 369
+ ++ F W ++I + +P QAL L C+M E V + + L AC G V G
Sbjct: 81 GEVEDPFLWNAVIKSHSHGKDPRQALLLLCLMLENGVSVDKFSLSLVLKACSRLGFVKGG 140
Query: 370 REIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
+I +++ + + C++ L + G L + + MP++
Sbjct: 141 MQIHGFLKKT-GLWSDLFLQNCLIGLYLKCGCLGLSRQMFDRMPKR 185
>sp|P0C899|PP271_ARATH Putative pentatricopeptide repeat-containing protein At3g49142
OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1
Length = 686
Score = 266 bits (681), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 156/498 (31%), Positives = 256/498 (51%), Gaps = 77/498 (15%)
Query: 67 IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
+H+ I ++ N+++ +KL+ + + A ++FDE+P+R + N MI Y+ NG
Sbjct: 61 VHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVMIRSYVNNGF 120
Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
E + + + RPD YTF +LKA +C + V +GR +H K + +
Sbjct: 121 YGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIV-----IGRKIHGSATKVGLSSTL 175
Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI------- 239
+ LV Y K G S AR+V D M ++V+ S++ G+ +DA E+
Sbjct: 176 FVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEVCREMESV 235
Query: 240 ------------------------------FRKTVEKDIVVYNAMIEGY----------- 258
F K +K +V +N MI Y
Sbjct: 236 KISHDAGTMASLLPAVSNTTTENVMYVKDMFFKMGKKSLVSWNVMIGVYMKNAMPVEAVE 295
Query: 259 -------------SISIETARKAL----------EVHCQLIKNVFFEDVKLGSALVDMYA 295
++SI + A ++H + + ++ L +AL+DMYA
Sbjct: 296 LYSRMEADGFEPDAVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYA 355
Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
KCG ++ AR VF++M+ ++V +WT+MI YG +G A+ LF +Q+ + P+ + F+
Sbjct: 356 KCGCLEKARDVFENMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVT 415
Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
L+AC HAGL+++GR F+ M Y + P++EH ACMVDLLGRAG +++A +F+ +M +
Sbjct: 416 TLAACSHAGLLEEGRSCFKLMTDHYKITPRLEHLACMVDLLGRAGKVKEAYRFIQDMSME 475
Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
PN VW ALL +CR+H D ++ +AA+++F+L A ++ G YV LSN A AG+W+ VT +
Sbjct: 476 PNERVWGALLGACRVHSDTDIGLLAADKLFQL-APEQSGYYVLLSNIYAKAGRWEEVTNI 534
Query: 476 REKMKLRGVLKDTGCSWV 493
R MK +G+ K+ G S V
Sbjct: 535 RNIMKSKGLKKNPGASNV 552
Score = 84.0 bits (206), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/202 (29%), Positives = 99/202 (49%), Gaps = 10/202 (4%)
Query: 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
P R L R VH++I+ D++ + L L+ +Y + AR VFD + E+NVI M
Sbjct: 53 PDIRTL-RTVHSRIILEDLRCNSSLGVKLMRAYASLKDVASARKVFDEIPERNVIIINVM 111
Query: 224 ISGFMSQGFVEDAEEIFRK----TVEKDIVVYNAMIEGYSIS--IETARKALEVHCQLIK 277
I +++ GF + ++F V D + +++ S S I RK +H K
Sbjct: 112 IRSYVNNGFYGEGVKVFGTMCGCNVRPDHYTFPCVLKACSCSGTIVIGRK---IHGSATK 168
Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
+ +G+ LV MY KCG + +AR V D M +++V +W S++ GY +N + ALE+
Sbjct: 169 VGLSSTLFVGNGLVSMYGKCGFLSEARLVLDEMSRRDVVSWNSLVVGYAQNQRFDDALEV 228
Query: 338 FCMMQECCVQPNYVTFLGALSA 359
M+ + + T L A
Sbjct: 229 CREMESVKISHDAGTMASLLPA 250
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 58/113 (51%)
Query: 45 ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
A S+ S L ++ G KIH +I + + PN + L+ ++ KCG L+ A +F+
Sbjct: 309 AVSITSVLPACGDTSALSLGKKIHGYIERKKLIPNLLLENALIDMYAKCGCLEKARDVFE 368
Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
+ R + ++ MI+ Y +G+ ++++L KL SG PD F L A +
Sbjct: 369 NMKSRDVVSWTAMISAYGFSGRGCDAVALFSKLQDSGLVPDSIAFVTTLAACS 421
>sp|Q9LND4|PPR14_ARATH Pentatricopeptide repeat-containing protein At1g06140,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E61 PE=2
SV=1
Length = 558
Score = 265 bits (677), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 156/439 (35%), Positives = 243/439 (55%), Gaps = 12/439 (2%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G+ IH K G+ + ++ L+ ++ + G ++ A ++FDE+P R + ++ GYLK
Sbjct: 128 GILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLK 187
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHA-QILKCDV 182
+ E L + +G D T ++KA NV +G+ VH I + +
Sbjct: 188 YSKDPEVFRLFCLMRDTGLALDALTLICLVKAC----GNV-FAGKVGKCVHGVSIRRSFI 242
Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
D L +++D YVK AR +F+ +++NV+ T++ISGF +A ++FR+
Sbjct: 243 DQSDYLQASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQ 302
Query: 243 TVEKDIVVYNAMIEGYSIS---IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
+ + I+ + +S + + R VH +I+N D ++ +DMYA+CG
Sbjct: 303 MLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGN 362
Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
I AR VFD M ++NV +W+SMI+ +G NG +AL+ F M+ V PN VTF+ LSA
Sbjct: 363 IQMARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSA 422
Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
C H+G V +G + FESM RDY + P+ EHYACMVDLLGRAG + +A F+ MP KP +
Sbjct: 423 CSHSGNVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMAS 482
Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
W ALLS+CR+H +V++A A ++ + ++ YV LSN A AG W+ V +R KM
Sbjct: 483 AWGALLSACRIHKEVDLAGEIAEKLLSMEP-EKSSVYVLLSNIYADAGMWEMVNCVRRKM 541
Query: 480 KLRGVLKDTGCSWVGTESG 498
++G K G S TE G
Sbjct: 542 GIKGYRKHVGQS--ATEVG 558
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 130/283 (45%), Gaps = 42/283 (14%)
Query: 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM--LEKNVICSTSMIS 225
N + VHA+++ + + VL ++L ++Y++ + +A F+ + ++N +++S
Sbjct: 21 NHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCWKRNRHSWNTILS 80
Query: 226 GFMSQGFVEDAEEIFRKTVEKDI-VVYNAM------IEGYS--------ISIETARKALE 270
G+ + D+ ++YN M ++ ++ + + +
Sbjct: 81 GYSKS----------KTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGIL 130
Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
+H +KN +D + +LV+MYA+ G ++ A++VFD + +N W ++ GY K
Sbjct: 131 IHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYSK 190
Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGH--AGLVDK---GREIFESM--ERDYSMK 383
+ LFC+M++ + + +T + + ACG+ AG V K G I S + DY
Sbjct: 191 DPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQ- 249
Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
A ++D+ + L+ A K + E N +W L+S
Sbjct: 250 ------ASIIDMYVKCRLLDNARK-LFETSVDRNVVMWTTLIS 285
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 86/172 (50%), Gaps = 16/172 (9%)
Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM--QQKNVFTWTS 320
+T +VH ++I + F ++V LGS+L + Y + ++D A F+ + ++N +W +
Sbjct: 18 KTLNHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCWKRNRHSWNT 77
Query: 321 MIDGYGKNGNP--NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF----- 373
++ GY K+ + L L+ M+ C + + A+ AC GL++ G I
Sbjct: 78 ILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENGILIHGLAMK 137
Query: 374 ESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
+++D + P +V++ + G++E A K E+P + NS +W L+
Sbjct: 138 NGLDKDDYVAPS------LVEMYAQLGTMESAQKVFDEIPVR-NSVLWGVLM 182
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 62/125 (49%), Gaps = 9/125 (7%)
Query: 33 LQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLK 92
L N +L+ L + S +L+H G +H ++ + G++ + + ++ +
Sbjct: 309 LPNQCTLAAILVSCSSLGSLRH---------GKSVHGYMIRNGIEMDAVNFTSFIDMYAR 359
Query: 93 CGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152
CG ++ A +FD +P+R + +++ MI + NG EE+L K+ S P+ TF +
Sbjct: 360 CGNIQMARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSL 419
Query: 153 LKAST 157
L A +
Sbjct: 420 LSACS 424
>sp|Q0WN60|PPR48_ARATH Pentatricopeptide repeat-containing protein At1g18485
OS=Arabidopsis thaliana GN=PCMP-H8 PE=2 SV=2
Length = 970
Score = 265 bits (677), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 140/437 (32%), Positives = 254/437 (58%), Gaps = 20/437 (4%)
Query: 66 KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
++H + K N ++ + + KCG+L YA ++F + +T++++N +I G+ ++
Sbjct: 416 ELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSN 475
Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
SL ++ SG PD +T +L A + +S LG+ VH I++ ++ D
Sbjct: 476 DPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKS-----LRLGKEVHGFIIRNWLERD 530
Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
+Y +++ Y+ G+ + +FD M +K+++ ++I+G++ GF + A +FR+
Sbjct: 531 LFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQ--- 587
Query: 246 KDIVVYNAMIEGYSIS--------IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
+V+Y + G S+ + + R E H +K++ +D + +L+DMYAK
Sbjct: 588 --MVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDAFIACSLIDMYAKN 645
Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
G I + +VF+ +++K+ +W +MI GYG +G +A++LF MQ P+ +TFLG L
Sbjct: 646 GSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVL 705
Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL-EMPEKP 416
+AC H+GL+ +G + M+ + +KP ++HYAC++D+LGRAG L++AL+ V EM E+
Sbjct: 706 TACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEA 765
Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
+ +W +LLSSCR+H ++EM A ++F+L ++P YV LSN A GKW+ V ++R
Sbjct: 766 DVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEP-EKPENYVLLSNLYAGLGKWEDVRKVR 824
Query: 477 EKMKLRGVLKDTGCSWV 493
++M + KD GCSW+
Sbjct: 825 QRMNEMSLRKDAGCSWI 841
Score = 105 bits (262), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 93/378 (24%), Positives = 177/378 (46%), Gaps = 28/378 (7%)
Query: 64 GLKIHAHIT-KTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
G KIH ++ T ++ + + +++ ++ CG+ + +FD L + L +N +I+ Y
Sbjct: 103 GRKIHQLVSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYS 162
Query: 123 KNGQVEESLSLVRKLVSSGER-PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
+N +E L +++S+ + PD +T+ ++KA S+V +G VH ++K
Sbjct: 163 RNELYDEVLETFIEMISTTDLLPDHFTYPCVIKACAG-MSDV----GIGLAVHGLVVKTG 217
Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
+ D + ALV Y G + A +FD+M E+N++ SMI F GF E++ +
Sbjct: 218 LVEDVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLG 277
Query: 242 KTVEK--------DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDM 293
+ +E+ D+ ++ + E VH +K +++ L +AL+DM
Sbjct: 278 EMMEENGDGAFMPDVATLVTVLPVCAREREIGLGK-GVHGWAVKLRLDKELVLNNALMDM 336
Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC--VQPNYV 351
Y+KCG I +A+ +F KNV +W +M+ G+ G+ + ++ M V+ + V
Sbjct: 337 YSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEV 396
Query: 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL----GRAGSLEQALK 407
T L A+ C H + +E+ YS+K + + + + + GSL A +
Sbjct: 397 TILNAVPVCFHESFLPSLKEL-----HCYSLKQEFVYNELVANAFVASYAKCGSLSYAQR 451
Query: 408 FVLEMPEKPNSDVWAALL 425
V + W AL+
Sbjct: 452 -VFHGIRSKTVNSWNALI 468
Score = 86.7 bits (213), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 70/268 (26%), Positives = 136/268 (50%), Gaps = 17/268 (6%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G ++H I + ++ + + + +L L++ CG L +FD + ++L ++N +I GYL+
Sbjct: 515 GKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQ 574
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
NG + +L + R++V G + G SM+ C S +P R LGR HA LK ++
Sbjct: 575 NGFPDRALGVFRQMVLYGIQLCG--ISMMPVFGAC--SLLPSLR-LGREAHAYALKHLLE 629
Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEI 239
D + +L+D Y K G + + VF+ + EK+ +MI G+ G ++A EE+
Sbjct: 630 DDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEM 689
Query: 240 FRKTVEKDIVVYNAMIEG--YSISIETARKALEVHCQLIKNVFFE-DVKLGSALVDMYAK 296
R D + + ++ +S I + L+ Q+ + + ++K + ++DM +
Sbjct: 690 QRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLD---QMKSSFGLKPNLKHYACVIDMLGR 746
Query: 297 CGKIDDARRVF--DHMQQKNVFTWTSMI 322
G++D A RV + ++ +V W S++
Sbjct: 747 AGQLDKALRVVAEEMSEEADVGIWKSLL 774
Score = 86.3 bits (212), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 144/327 (44%), Gaps = 30/327 (9%)
Query: 118 IAGYLKNGQVEESLSLVRKLVSSGERP-DGY-----TFSMILKASTCCRSNVPLPRNLGR 171
I+ + + G +++S V++ V E D + ++L+AS R ++ + R + +
Sbjct: 50 ISNFCETGDLDKSFRTVQEFVGDDESSSDAFLLVREALGLLLQASGK-RKDIEMGRKIHQ 108
Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
+V ++ DDVL T ++ Y G +R VFD + KN+ ++IS +
Sbjct: 109 LVSGST---RLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNE 165
Query: 232 FVEDAEEIFRKTVEK-----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
++ E F + + D Y +I+ + + L VH ++K EDV +
Sbjct: 166 LYDEVLETFIEMISTTDLLPDHFTYPCVIKACA-GMSDVGIGLAVHGLVVKTGLVEDVFV 224
Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE--- 343
G+ALV Y G + DA ++FD M ++N+ +W SMI + NG ++ L M E
Sbjct: 225 GNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENG 284
Query: 344 -CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA----CMVDLLGR 398
P+ T + L C + G+ + +++K +++ ++D+ +
Sbjct: 285 DGAFMPDVATLVTVLPVCAREREIGLGKGV-----HGWAVKLRLDKELVLNNALMDMYSK 339
Query: 399 AGSLEQALKFVLEMPEKPNSDVWAALL 425
G + A + + +M N W ++
Sbjct: 340 CGCITNA-QMIFKMNNNKNVVSWNTMV 365
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/186 (25%), Positives = 95/186 (51%), Gaps = 10/186 (5%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G + HA+ K ++ + I+ L+ ++ K G++ + ++F+ L +++ +++N MI GY
Sbjct: 616 GREAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGI 675
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP--RNLGRMVHAQILKCD 181
+G +E++ L ++ +G PD TF +L A C S + R L +M + LK +
Sbjct: 676 HGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTA--CNHSGLIHEGLRYLDQMKSSFGLKPN 733
Query: 182 VKADDVLYTALVDSYVKGGKTSYA-RIVFDMMLEK-NVICSTSMISGFMSQGFVEDAEEI 239
+K Y ++D + G+ A R+V + M E+ +V S++S +E E++
Sbjct: 734 LKH----YACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKV 789
Query: 240 FRKTVE 245
K E
Sbjct: 790 AAKLFE 795
>sp|Q0WSH6|PP312_ARATH Pentatricopeptide repeat-containing protein At4g14850
OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1
Length = 684
Score = 265 bits (676), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 160/482 (33%), Positives = 247/482 (51%), Gaps = 32/482 (6%)
Query: 18 RHYTLVPPNQTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVK 77
R +VP + TFP + SL P+T G +IHA K G
Sbjct: 100 RREGVVPNDFTFPCAFKAVASLRLPVT-------------------GKQIHALAVKCGRI 140
Query: 78 PNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKL 137
+ + ++ K A ++FDE+P+R L +N I+ + +G+ E++ +
Sbjct: 141 LDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWNAFISNSVTDGRPREAIEAFIEF 200
Query: 138 VSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYV 197
P+ TF L A C + L NLG +H +L+ D + L+D Y
Sbjct: 201 RRIDGHPNSITFCAFLNA---CSDWLHL--NLGMQLHGLVLRSGFDTDVSVCNGLIDFYG 255
Query: 198 KGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEG 257
K + + I+F M KN + S+++ ++ E A ++ ++ KDIV + +
Sbjct: 256 KCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVLYLRS-RKDIVETSDFMIS 314
Query: 258 YSISIETARKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK 313
+S LE +H +K + +GSALVDMY KCG I+D+ + FD M +K
Sbjct: 315 SVLSACAGMAGLELGRSIHAHAVKACVERTIFVGSALVDMYGKCGCIEDSEQAFDEMPEK 374
Query: 314 NVFTWTSMIDGYGKNGNPNQALELFCMM--QECCVQPNYVTFLGALSACGHAGLVDKGRE 371
N+ T S+I GY G + AL LF M + C PNY+TF+ LSAC AG V+ G +
Sbjct: 375 NLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPTPNYMTFVSLLSACSRAGAVENGMK 434
Query: 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431
IF+SM Y ++P EHY+C+VD+LGRAG +E+A +F+ +MP +P VW AL ++CR+H
Sbjct: 435 IFDSMRSTYGIEPGAEHYSCIVDMLGRAGMVERAYEFIKKMPIQPTISVWGALQNACRMH 494
Query: 432 DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491
++ +AA +FKL+ D G +V LSNT AAAG+W +RE++K G+ K G S
Sbjct: 495 GKPQLGLLAAENLFKLDPKD-SGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYS 553
Query: 492 WV 493
W+
Sbjct: 554 WI 555
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 112/450 (24%), Positives = 202/450 (44%), Gaps = 25/450 (5%)
Query: 43 LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLI-LHLKCGALKYAGQ 101
L+A +L L++ I++ + G +HA I KT P LI ++ K + A
Sbjct: 4 LSADALGLLLKNAISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARL 63
Query: 102 MFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161
+ P R + ++ +I+G +NG +L ++ G P+ +TF KA R
Sbjct: 64 VLRLTPARNVVSWTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLR- 122
Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
LP G+ +HA +KC D + + D Y K AR +FD + E+N+
Sbjct: 123 ---LPVT-GKQIHALAVKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPERNLETWN 178
Query: 222 SMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIK 277
+ IS ++ G +A E F R + + + A + S + +++H +++
Sbjct: 179 AFISNSVTDGRPREAIEAFIEFRRIDGHPNSITFCAFLNACSDWLHL-NLGMQLHGLVLR 237
Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
+ F DV + + L+D Y KC +I + +F M KN +W S++ Y +N +A L
Sbjct: 238 SGFDTDVSVCNGLIDFYGKCKQIRSSEIIFTEMGTKNAVSWCSLVAAYVQNHEDEKASVL 297
Query: 338 FCMMQECCVQPNYVTFLGALSAC-GHAGLVDKGREIFESMERDYSMKPKMEHY----ACM 392
+ ++ V+ + LSAC G AGL + GR I +++K +E + +
Sbjct: 298 YLRSRKDIVETSDFMISSVLSACAGMAGL-ELGRSI-----HAHAVKACVERTIFVGSAL 351
Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR 452
VD+ G+ G +E + + EMPEK N +L+ V+MA E+
Sbjct: 352 VDMYGKCGCIEDSEQAFDEMPEK-NLVTRNSLIGGYAHQGQVDMALALFEEMAPRGCGPT 410
Query: 453 PG--AYVALSNTLAAAGKWDSVTELREKMK 480
P +V+L + + AG ++ ++ + M+
Sbjct: 411 PNYMTFVSLLSACSRAGAVENGMKIFDSMR 440
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 99/232 (42%), Gaps = 9/232 (3%)
Query: 259 SISIETARKALEVHCQLIKNVFFEDVK-LGSALVDMYAKCGKIDDARRVFDHMQQKNVFT 317
+IS + R VH +++K + L + L++MY+K + AR V +NV +
Sbjct: 16 AISASSMRLGRVVHARIVKTLDSPPPPFLANYLINMYSKLDHPESARLVLRLTPARNVVS 75
Query: 318 WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377
WTS+I G +NG+ + AL F M+ V PN TF A A L G++I ++
Sbjct: 76 WTSLISGLAQNGHFSTALVEFFEMRREGVVPNDFTFPCAFKAVASLRLPVTGKQI-HALA 134
Query: 378 RDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
+ D+ + + A K E+PE+ N + W A +S+ A
Sbjct: 135 VKCGRILDVFVGCSAFDMYCKTRLRDDARKLFDEIPER-NLETWNAFISNSVTDGRPREA 193
Query: 438 NIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTG 489
A E +++ + + A N A W L M+L G++ +G
Sbjct: 194 IEAFIEFRRIDGHPNSITFCAFLN---ACSDW---LHLNLGMQLHGLVLRSG 239
>sp|O23169|PP353_ARATH Pentatricopeptide repeat-containing protein At4g37170
OS=Arabidopsis thaliana GN=PCMP-H5 PE=3 SV=1
Length = 691
Score = 264 bits (674), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 156/470 (33%), Positives = 253/470 (53%), Gaps = 51/470 (10%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMI----- 118
G K+H HI +G P I +LL ++ KCG+L A ++FDE+P R L ++N M+
Sbjct: 104 GKKVHEHIRTSGFVPGIVIWNRLLRMYAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAE 163
Query: 119 --------------------------AGYLKNGQVEESL---SLVRKLVSSGERPDGYTF 149
GY+K Q EE+L SL++++ +S RP+ +T
Sbjct: 164 VGLLEEARKLFDEMTEKDSYSWTAMVTGYVKKDQPEEALVLYSLMQRVPNS--RPNIFTV 221
Query: 150 SMILKAST---CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR 206
S+ + A+ C R G+ +H I++ + +D+VL+++L+D Y K G AR
Sbjct: 222 SIAVAAAAAVKCIRR--------GKEIHGHIVRAGLDSDEVLWSSLMDMYGKCGCIDEAR 273
Query: 207 IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV---EKDIVVYNAMIEGYSISIE 263
+FD ++EK+V+ TSMI + + +F + V E+ A + +
Sbjct: 274 NIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSELVGSCERPNEYTFAGVLNACADLT 333
Query: 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMID 323
T +VH + + F S+LVDMY KCG I+ A+ V D + ++ +WTS+I
Sbjct: 334 TEELGKQVHGYMTRVGFDPYSFASSSLVDMYTKCGNIESAKHVVDGCPKPDLVSWTSLIG 393
Query: 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK 383
G +NG P++AL+ F ++ + +P++VTF+ LSAC HAGLV+KG E F S+ + +
Sbjct: 394 GCAQNGQPDEALKYFDLLLKSGTKPDHVTFVNVLSACTHAGLVEKGLEFFYSITEKHRLS 453
Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANE 443
+HY C+VDLL R+G EQ + EMP KP+ +WA++L C + ++++A AA E
Sbjct: 454 HTSDHYTCLVDLLARSGRFEQLKSVISEMPMKPSKFLWASVLGGCSTYGNIDLAEEAAQE 513
Query: 444 IFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
+FK+ + P YV ++N AAAGKW+ ++R++M+ GV K G SW
Sbjct: 514 LFKIEPEN-PVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWT 562
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 90/328 (27%), Positives = 153/328 (46%), Gaps = 42/328 (12%)
Query: 136 KLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDS 195
+L+ ++P T+ +++ + R+ G+ VH I V++ L+
Sbjct: 75 QLLGRAKKPPASTYCNLIQVCSQTRA-----LEEGKKVHEHIRTSGFVPGIVIWNRLLRM 129
Query: 196 YVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMI 255
Y K G AR VFD M +++ M++G+ G +E+A ++F + EKD + AM+
Sbjct: 130 YAKCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWTAMV 189
Query: 256 EGY---------------------------SISI--------ETARKALEVHCQLIKNVF 280
GY ++SI + R+ E+H +++
Sbjct: 190 TGYVKKDQPEEALVLYSLMQRVPNSRPNIFTVSIAVAAAAAVKCIRRGKEIHGHIVRAGL 249
Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
D L S+L+DMY KCG ID+AR +FD + +K+V +WTSMID Y K+ + LF
Sbjct: 250 DSDEVLWSSLMDMYGKCGCIDEARNIFDKIVEKDVVSWTSMIDRYFKSSRWREGFSLFSE 309
Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
+ C +PN TF G L+AC + G+++ M R P + +VD+ + G
Sbjct: 310 LVGSCERPNEYTFAGVLNACADLTTEELGKQVHGYMTR-VGFDPYSFASSSLVDMYTKCG 368
Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSC 428
++E A K V++ KP+ W +L+ C
Sbjct: 369 NIESA-KHVVDGCPKPDLVSWTSLIGGC 395
>sp|Q9FNN7|PP371_ARATH Pentatricopeptide repeat-containing protein At5g08510
OS=Arabidopsis thaliana GN=PCMP-E20 PE=2 SV=1
Length = 511
Score = 263 bits (672), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 156/463 (33%), Positives = 245/463 (52%), Gaps = 46/463 (9%)
Query: 66 KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
++HAH +TGV ++ +LL++ L YA ++FD YN +I Y +
Sbjct: 6 QLHAHCLRTGVDETKDLLQRLLLI----PNLVYARKLFDHHQNSCTFLYNKLIQAYYVHH 61
Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
Q ES+ L L G RP +TF+ I AS S PL R++H+Q + ++D
Sbjct: 62 QPHESIVLYNLLSFDGLRPSHHTFNFIFAASASFSSARPL-----RLLHSQFFRSGFESD 116
Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
T L+ +Y K G AR VFD M +++V +MI+G+ +G ++ A E+F
Sbjct: 117 SFCCTTLITAYAKLGALCCARRVFDEMSKRDVPVWNAMITGYQRRGDMKAAMELFDSMPR 176
Query: 246 KDIVVYNAMIEGYS------------ISIETARKALEVHCQLI----------------- 276
K++ + +I G+S + +E + H ++
Sbjct: 177 KNVTSWTTVISGFSQNGNYSEALKMFLCMEKDKSVKPNHITVVSVLPACANLGELEIGRR 236
Query: 277 ------KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHM-QQKNVFTWTSMIDGYGKNG 329
+N FF+++ + +A ++MY+KCG ID A+R+F+ + Q+N+ +W SMI +G
Sbjct: 237 LEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLATHG 296
Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
++AL LF M +P+ VTF+G L AC H G+V KG+E+F+SME + + PK+EHY
Sbjct: 297 KHDEALTLFAQMLREGEKPDAVTFVGLLLACVHGGMVVKGQELFKSMEEVHKISPKLEHY 356
Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
CM+DLLGR G L++A + MP KP++ VW LL +C H +VE+A IA+ +FKL
Sbjct: 357 GCMIDLLGRVGKLQEAYDLIKTMPMKPDAVVWGTLLGACSFHGNVEIAEIASEALFKLEP 416
Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSW 492
+ PG V +SN AA KWD V +R+ MK + K G S+
Sbjct: 417 TN-PGNCVIMSNIYAANEKWDGVLRMRKLMKKETMTKAAGYSY 458
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 1/93 (1%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP-QRTLSAYNYMIAGYL 122
G ++ + + G N + + ++ KCG + A ++F+EL QR L ++N MI
Sbjct: 234 GRRLEGYARENGFFDNIYVCNATIEMYSKCGMIDVAKRLFEELGNQRNLCSWNSMIGSLA 293
Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155
+G+ +E+L+L +++ GE+PD TF +L A
Sbjct: 294 THGKHDEALTLFAQMLREGEKPDAVTFVGLLLA 326
>sp|Q9FRI5|PPR57_ARATH Pentatricopeptide repeat-containing protein At1g25360
OS=Arabidopsis thaliana GN=PCMP-H74 PE=2 SV=1
Length = 790
Score = 263 bits (671), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 159/505 (31%), Positives = 272/505 (53%), Gaps = 81/505 (16%)
Query: 65 LKIHAHITKTGVKPNTNISIKLLILHLKCGA----LKYAGQMFDELPQR----------- 109
++ HA K+G T++S L+ ++ KC + L A ++FDE+ ++
Sbjct: 169 VQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVFDEILEKDERSWTTMMTG 228
Query: 110 ---------------------TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYT 148
L AYN MI+GY+ G +E+L +VR++VSSG D +T
Sbjct: 229 YVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEALEMVRRMVSSGIELDEFT 288
Query: 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLY--TALVDSYVKGGKTSYAR 206
+ +++A C + + LG+ VHA +L+ + D + +LV Y K GK AR
Sbjct: 289 YPSVIRA--CATAGL---LQLGKQVHAYVLR---REDFSFHFDNSLVSLYYKCGKFDEAR 340
Query: 207 IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEG--------- 257
+F+ M K+++ +++SG++S G + +A+ IF++ EK+I+ + MI G
Sbjct: 341 AIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEE 400
Query: 258 -------------------YSISIETAR------KALEVHCQLIKNVFFEDVKLGSALVD 292
+S +I++ + H QL+K F + G+AL+
Sbjct: 401 GLKLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALIT 460
Query: 293 MYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352
MYAKCG +++AR+VF M + +W ++I G++G+ +A++++ M + ++P+ +T
Sbjct: 461 MYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRIT 520
Query: 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412
L L+AC HAGLVD+GR+ F+SME Y + P +HYA ++DLL R+G A + +
Sbjct: 521 LLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESL 580
Query: 413 PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSV 472
P KP +++W ALLS CR+H ++E+ IAA+++F L + G Y+ LSN AA G+W+ V
Sbjct: 581 PFKPTAEIWEALLSGCRVHGNMELGIIAADKLFGL-IPEHDGTYMLLSNMHAATGQWEEV 639
Query: 473 TELREKMKLRGVLKDTGCSWVGTES 497
+R+ M+ RGV K+ CSW+ E+
Sbjct: 640 ARVRKLMRDRGVKKEVACSWIEMET 664
Score = 115 bits (288), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 94/385 (24%), Positives = 164/385 (42%), Gaps = 81/385 (21%)
Query: 67 IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ------------------ 108
+H +I G +P +I +L+ ++ K L YA Q+FDE+ +
Sbjct: 36 VHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPDKIARTTMVSGYCASGD 95
Query: 109 ---------------RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153
R YN MI G+ N +++L K+ G +PD +TF+ +L
Sbjct: 96 ITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKMKHEGFKPDNFTFASVL 155
Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKT----SYARIVF 209
V HA LK + ALV Y K + AR VF
Sbjct: 156 AGLAL----VADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCASSPSLLHSARKVF 211
Query: 210 DMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK-DIVVYNAMIEG------YSISI 262
D +LEK+ T+M++G++ G+ + EE+ + +V YNAMI G Y ++
Sbjct: 212 DEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMISGYVNRGFYQEAL 271
Query: 263 ETARKAL----------------------------EVHCQLIKNVFFEDVKLGSALVDMY 294
E R+ + +VH +++ F ++LV +Y
Sbjct: 272 EMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFS-FHFDNSLVSLY 330
Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
KCGK D+AR +F+ M K++ +W +++ GY +G+ +A +F M+E N ++++
Sbjct: 331 YKCGKFDEARAIFEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKE----KNILSWM 386
Query: 355 GALSACGHAGLVDKGREIFESMERD 379
+S G ++G ++F M+R+
Sbjct: 387 IMISGLAENGFGEEGLKLFSCMKRE 411
Score = 94.7 bits (234), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 86/346 (24%), Positives = 146/346 (42%), Gaps = 85/346 (24%)
Query: 160 RSNVPLPR---NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN 216
R +PL R L R VH I+ + + L+D Y K + +YAR +FD + E +
Sbjct: 20 RLCLPLRRTSLQLARAVHGNIITFGFQPRAHILNRLIDVYCKSSELNYARQLFDEISEPD 79
Query: 217 VICSTSMISGFMSQGFVEDAEEIFRK--TVEKDIVVYNAMIEGYS--------------- 259
I T+M+SG+ + G + A +F K +D V+YNAMI G+S
Sbjct: 80 KIARTTMVSGYCASGDITLARGVFEKAPVCMRDTVMYNAMITGFSHNNDGYSAINLFCKM 139
Query: 260 --------------------ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
+ + ++ ++ H +K+ + +ALV +Y+KC
Sbjct: 140 KHEGFKPDNFTFASVLAGLALVADDEKQCVQFHAAALKSGAGYITSVSNALVSVYSKCAS 199
Query: 300 ----IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPN----------------------- 332
+ AR+VFD + +K+ +WT+M+ GY KNG +
Sbjct: 200 SPSLLHSARKVFDEILEKDERSWTTMMTGYVKNGYFDLGEELLEGMDDNMKLVAYNAMIS 259
Query: 333 ---------QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER--DYS 381
+ALE+ M ++ + T+ + AC AGL+ G+++ + R D+S
Sbjct: 260 GYVNRGFYQEALEMVRRMVSSGIELDEFTYPSVIRACATAGLLQLGKQVHAYVLRREDFS 319
Query: 382 MKPKMEHY-ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426
H+ +V L + G ++A +MP K + W ALLS
Sbjct: 320 F-----HFDNSLVSLYYKCGKFDEARAIFEKMPAK-DLVSWNALLS 359
Score = 61.6 bits (148), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 68/326 (20%), Positives = 130/326 (39%), Gaps = 46/326 (14%)
Query: 43 LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
L + PS ++ + G ++HA++ + + + L+ L+ KCG A +
Sbjct: 284 LDEFTYPSVIRACATAGLLQLGKQVHAYVLRRE-DFSFHFDNSLVSLYYKCGKFDEARAI 342
Query: 103 FDELPQRTLSAYNYMIAGYLKNGQV-------------------------------EESL 131
F+++P + L ++N +++GY+ +G + EE L
Sbjct: 343 FEKMPAKDLVSWNALLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGL 402
Query: 132 SLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTA 191
L + G P Y FS +K+ + G+ HAQ+LK + A
Sbjct: 403 KLFSCMKREGFEPCDYAFSGAIKSCAVLGAYCN-----GQQYHAQLLKIGFDSSLSAGNA 457
Query: 192 LVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEIFRKTVEKD 247
L+ Y K G AR VF M + + ++I+ G +A EE+ +K + D
Sbjct: 458 LITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPD 517
Query: 248 IVVYNAMIEGYSIS--IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARR 305
+ ++ S + ++ RK + + + D + L+D+ + GK DA
Sbjct: 518 RITLLTVLTACSHAGLVDQGRKYFDSMETVYRIPPGADHY--ARLIDLLCRSGKFSDAES 575
Query: 306 VFDHMQQK-NVFTWTSMIDGYGKNGN 330
V + + K W +++ G +GN
Sbjct: 576 VIESLPFKPTAEIWEALLSGCRVHGN 601
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 85/193 (44%), Gaps = 17/193 (8%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G + HA + K G + + L+ ++ KCG ++ A Q+F +P ++N +IA +
Sbjct: 436 GQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFRTMPCLDSVSWNALIAALGQ 495
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH---AQILKC 180
+G E++ + +++ G RPD T +L A C + + + GR + +
Sbjct: 496 HGHGAEAVDVYEEMLKKGIRPDRITLLTVLTA--CSHAGLV---DQGRKYFDSMETVYRI 550
Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK------NVICSTSMISGFMSQGFVE 234
AD Y L+D + GK S A V + + K + S + G M G +
Sbjct: 551 PPGADH--YARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGCRVHGNMELGIIA 608
Query: 235 DAEEIFRKTVEKD 247
A+++F E D
Sbjct: 609 -ADKLFGLIPEHD 620
>sp|O49619|PP350_ARATH Pentatricopeptide repeat-containing protein At4g35130,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H27 PE=3
SV=1
Length = 804
Score = 262 bits (669), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 146/440 (33%), Positives = 250/440 (56%), Gaps = 17/440 (3%)
Query: 60 TPFYGLKIHAHITKTGVKP-NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMI 118
+P G +IH H ++ ++ + + +L ++ K G + YA ++F+ + QR + A+N MI
Sbjct: 246 SPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMI 305
Query: 119 AGYLKNGQVEESLSLVRKLV-SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQI 177
Y +NG+V ++ +K+ +G +PD T +L AS GR +H
Sbjct: 306 GCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASAILE---------GRTIHGYA 356
Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
++ VL TAL+D Y + G+ A ++FD M EKNVI S+I+ ++ G A
Sbjct: 357 MRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSAL 416
Query: 238 EIFRKTVEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDM 293
E+F++ + +V +++ Y+ S+ + + E+H ++K+ ++ + + ++LV M
Sbjct: 417 ELFQELWDSSLVPDSTTIASILPAYAESLSLS-EGREIHAYIVKSRYWSNTIILNSLVHM 475
Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
YA CG ++DAR+ F+H+ K+V +W S+I Y +G ++ LF M V PN TF
Sbjct: 476 YAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTF 535
Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
L+AC +G+VD+G E FESM+R+Y + P +EHY CM+DL+GR G+ A +F+ EMP
Sbjct: 536 ASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIGRTGNFSAAKRFLEEMP 595
Query: 414 EKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473
P + +W +LL++ R H D+ +A AA +IFK+ +D G YV L N A AG+W+ V
Sbjct: 596 FVPTARIWGSLLNASRNHKDITIAEFAAEQIFKME-HDNTGCYVLLLNMYAEAGRWEDVN 654
Query: 474 ELREKMKLRGVLKDTGCSWV 493
++ M+ +G+ + + S V
Sbjct: 655 RIKLLMESKGISRTSSRSTV 674
Score = 164 bits (415), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 122/425 (28%), Positives = 213/425 (50%), Gaps = 22/425 (5%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G KIHA + K G + + L+ L++K G A ++F+E+P+R + ++N MI+GYL
Sbjct: 149 GKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLA 208
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
G SL L ++++ G +PD FS + C S+V P+ +G+ +H ++ ++
Sbjct: 209 LGDGFSSLMLFKEMLKCGFKPD--RFSTMSALGAC--SHVYSPK-MGKEIHCHAVRSRIE 263
Query: 184 ADDVLY-TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
DV+ T+++D Y K G+ SYA +F+ M+++N++ MI + G V DA F+K
Sbjct: 264 TGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQK 323
Query: 243 TVEKDIVVYNAMIEGYSISIETARKALE---VHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
E++ + + + SI++ A LE +H ++ F + L +AL+DMY +CG+
Sbjct: 324 MSEQNGLQPDVIT---SINLLPASAILEGRTIHGYAMRRGFLPHMVLETALIDMYGECGQ 380
Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
+ A +FD M +KNV +W S+I Y +NG ALELF + + + P+ T L A
Sbjct: 381 LKSAEVIFDRMAEKNVISWNSIIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPA 440
Query: 360 CGHAGLVDKGREIFESM--ERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
+ + +GREI + R +S + +V + G LE A K + K
Sbjct: 441 YAESLSLSEGREIHAYIVKSRYWSNTIILNS---LVHMYAMCGDLEDARKCFNHILLK-- 495
Query: 418 SDV--WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
DV W +++ + +H ++ +E+ N + +L + +G D E
Sbjct: 496 -DVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACSISGMVDEGWEY 554
Query: 476 REKMK 480
E MK
Sbjct: 555 FESMK 559
Score = 119 bits (297), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 88/335 (26%), Positives = 165/335 (49%), Gaps = 18/335 (5%)
Query: 99 AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
A Q+FDE+ + +N MI G+ G E++ ++V +G + D +T+ ++K+
Sbjct: 83 ALQLFDEMNKADAFLWNVMIKGFTSCGLYIEAVQFYSRMVFAGVKADTFTYPFVIKSVAG 142
Query: 159 CRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI 218
S G+ +HA ++K +D + +L+ Y+K G A VF+ M E++++
Sbjct: 143 ISS-----LEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKVFEEMPERDIV 197
Query: 219 CSTSMISGFMSQGFVEDAEEIFRKTVE---KDIVVYNAMIEGYSISIETARKALEVHCQL 275
SMISG+++ G + +F++ ++ K G + + + E+HC
Sbjct: 198 SWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSALGACSHVYSPKMGKEIHCHA 257
Query: 276 IKN-VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQA 334
+++ + DV + ++++DMY+K G++ A R+F+ M Q+N+ W MI Y +NG A
Sbjct: 258 VRSRIETGDVMVMTSILDMYSKYGEVSYAERIFNGMIQRNIVAWNVMIGCYARNGRVTDA 317
Query: 335 LELFCMMQE-CCVQPNYVTFLGALSACGHAGLVDKGREIFE-SMERDYSMKPKMEHYACM 392
F M E +QP+ +T + L A + +GR I +M R + P M +
Sbjct: 318 FLCFQKMSEQNGLQPDVITSINLLPASA----ILEGRTIHGYAMRRGF--LPHMVLETAL 371
Query: 393 VDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
+D+ G G L+ A M EK N W +++++
Sbjct: 372 IDMYGECGQLKSAEVIFDRMAEK-NVISWNSIIAA 405
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 61/113 (53%)
Query: 45 ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFD 104
+T++ S L Y S + G +IHA+I K+ NT I L+ ++ CG L+ A + F+
Sbjct: 431 STTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCFN 490
Query: 105 ELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAST 157
+ + + ++N +I Y +G S+ L ++++S P+ TF+ +L A +
Sbjct: 491 HILLKDVVSWNSIIMAYAVHGFGRISVWLFSEMIASRVNPNKSTFASLLAACS 543
>sp|Q7Y211|PP285_ARATH Pentatricopeptide repeat-containing protein At3g57430,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H81 PE=2
SV=2
Length = 890
Score = 261 bits (667), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 156/447 (34%), Positives = 250/447 (55%), Gaps = 23/447 (5%)
Query: 64 GLKIHAHITKTG-VKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
G ++HA+ K G + N+ + L+ ++ C + ++FD + R + +N MIAGY
Sbjct: 321 GKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYS 380
Query: 123 KNGQVEESLSLVRKLV-SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
+N +E+L L + S+G + T + ++ A C RS R +H ++K
Sbjct: 381 QNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA--CVRSGA-FSRK--EAIHGFVVKRG 435
Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
+ D + L+D Y + GK A +F M +++++ +MI+G++ EDA +
Sbjct: 436 LDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLH 495
Query: 242 K--TVEKDIV--VYNAMIEGYSISIETA----------RKALEVHCQLIKNVFFEDVKLG 287
K +E+ + ++ SI++ T K E+H IKN DV +G
Sbjct: 496 KMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLATDVAVG 555
Query: 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347
SALVDMYAKCG + +R+VFD + QKNV TW +I YG +GN +A++L MM V+
Sbjct: 556 SALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLRMMMVQGVK 615
Query: 348 PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALK 407
PN VTF+ +AC H+G+VD+G IF M+ DY ++P +HYAC+VDLLGRAG +++A +
Sbjct: 616 PNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRAGRIKEAYQ 675
Query: 408 FVLEMPEKPN-SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
+ MP N + W++LL + R+H+++E+ IAA + +L N YV L+N ++A
Sbjct: 676 LMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPN-VASHYVLLANIYSSA 734
Query: 467 GKWDSVTELREKMKLRGVLKDTGCSWV 493
G WD TE+R MK +GV K+ GCSW+
Sbjct: 735 GLWDKATEVRRNMKEQGVRKEPGCSWI 761
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 98/383 (25%), Positives = 184/383 (48%), Gaps = 26/383 (6%)
Query: 47 SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNT-NISIKLLILHLKCGALKYAGQMFDE 105
+ P+ L+ + G +IHAH+ K G ++ ++ L+ L+ KCG ++FD
Sbjct: 99 AFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDR 158
Query: 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165
+ +R ++N +I+ + E +L R ++ P +T ++ T C SN+P+
Sbjct: 159 ISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVV---TAC-SNLPM 214
Query: 166 PRNL--GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSM 223
P L G+ VHA L+ + + + LV Y K GK + ++++ ++++ ++
Sbjct: 215 PEGLMMGKQVHAYGLR-KGELNSFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTV 273
Query: 224 ISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKN- 278
+S + +A E R+ VE D ++++ S +E R E+H +KN
Sbjct: 274 LSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACS-HLEMLRTGKELHAYALKNG 332
Query: 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELF 338
E+ +GSALVDMY C ++ RRVFD M + + W +MI GY +N + +AL LF
Sbjct: 333 SLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLF 392
Query: 339 CMMQECC-VQPNYVTFLGALSACGHAGLVDK-----GREIFESMERDYSMKPKMEHYACM 392
M+E + N T G + AC +G + G + ++RD ++ +
Sbjct: 393 IGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDRFVQNT------L 446
Query: 393 VDLLGRAGSLEQALKFVLEMPEK 415
+D+ R G ++ A++ +M ++
Sbjct: 447 MDMYSRLGKIDIAMRIFGKMEDR 469
Score = 72.4 bits (176), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 118/261 (45%), Gaps = 19/261 (7%)
Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
+++ + E++ ++ G +PD Y F +LKA + LG+ +HA + K
Sbjct: 73 VRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQD-----MELGKQIHAHVYKFG 127
Query: 182 VKADDV-LYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
D V + LV+ Y K G VFD + E+N + S+IS S E A E F
Sbjct: 128 YGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAF 187
Query: 241 RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLI--KNVFFEDVKLG-------SALV 291
R +++++ + + +S+ TA L + L+ K V ++ G + LV
Sbjct: 188 RCMLDENVEPSSFTL----VSVVTACSNLPMPEGLMMGKQVHAYGLRKGELNSFIINTLV 243
Query: 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351
MY K GK+ ++ + +++ TW +++ +N +ALE M V+P+
Sbjct: 244 AMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEF 303
Query: 352 TFLGALSACGHAGLVDKGREI 372
T L AC H ++ G+E+
Sbjct: 304 TISSVLPACSHLEMLRTGKEL 324
>sp|Q9LSB8|PP235_ARATH Putative pentatricopeptide repeat-containing protein At3g15930
OS=Arabidopsis thaliana GN=PCMP-E51 PE=3 SV=2
Length = 687
Score = 261 bits (667), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 149/464 (32%), Positives = 249/464 (53%), Gaps = 40/464 (8%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G K+H H+ K G+ N + L+ ++ CG + A +FD + + ++N MI+GY +
Sbjct: 154 GKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNR 213
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
+ EES+ L+ ++ + P T ++L A + + ++L + VH + +C +
Sbjct: 214 MKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKD-----KDLCKRVHEYVSECKTE 268
Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
L ALV++Y G+ A +F M ++VI TS++ G++ +G ++ A F +
Sbjct: 269 PSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQM 328
Query: 244 VEKDIVVYNAMIEGY------SISIETARK------------------------ALEV-- 271
+D + + MI+GY + S+E R+ +LE+
Sbjct: 329 PVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGE 388
Query: 272 --HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329
+ KN DV +G+AL+DMY KCG + A++VF M Q++ FTWT+M+ G NG
Sbjct: 389 WIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNG 448
Query: 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389
+A+++F MQ+ +QP+ +T+LG LSAC H+G+VD+ R+ F M D+ ++P + HY
Sbjct: 449 QGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKMRSDHRIEPSLVHY 508
Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449
CMVD+LGRAG +++A + + +MP PNS VW ALL + RLH+D MA +AA +I +L
Sbjct: 509 GCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPMAELAAKKILELEP 568
Query: 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
D Y L N A +W + E+R K+ + K G S +
Sbjct: 569 -DNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLI 611
Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 100/398 (25%), Positives = 184/398 (46%), Gaps = 46/398 (11%)
Query: 66 KIHAHITKTGVKPNTNISIKLLILHLK--CGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
++H+ GV PN KL + G + YA ++F ++P+ + +N MI G+ K
Sbjct: 52 QLHSQSITRGVAPNPTFQKKLFVFWCSRLGGHVSYAYKLFVKIPEPDVVVWNNMIKGWSK 111
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
E + L ++ G PD +TF +L R L G+ +H ++K +
Sbjct: 112 VDCDGEGVRLYLNMLKEGVTPDSHTFPFLLNGLK--RDGGALA--CGKKLHCHVVKFGLG 167
Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
++ + ALV Y G AR VFD +++V MISG+ E++ E+ +
Sbjct: 168 SNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVE- 226
Query: 244 VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE-----DVKLGSALVDMYAKCG 298
+E+++V ++ +S + K ++ C+ + E ++L +ALV+ YA CG
Sbjct: 227 MERNLVSPTSVTLLLVLSACSKVKDKDL-CKRVHEYVSECKTEPSLRLENALVNAYAACG 285
Query: 299 KIDDARRVFDHMQQKNVFTWTS-------------------------------MIDGYGK 327
++D A R+F M+ ++V +WTS MIDGY +
Sbjct: 286 EMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLR 345
Query: 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387
G N++LE+F MQ + P+ T + L+AC H G ++ G I ++++ +K +
Sbjct: 346 AGCFNESLEIFREMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKN-KIKNDVV 404
Query: 388 HYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
++D+ + G E+A K +M ++ + W A++
Sbjct: 405 VGNALIDMYFKCGCSEKAQKVFHDMDQR-DKFTWTAMV 441
Score = 83.2 bits (204), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 72/311 (23%), Positives = 140/311 (45%), Gaps = 22/311 (7%)
Query: 199 GGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAM 254
GG SYA +F + E +V+ +MI G+ + ++ ++ V D + +
Sbjct: 81 GGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFL 140
Query: 255 IEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKN 314
+ G ++HC ++K ++ + +ALV MY+ CG +D AR VFD +++
Sbjct: 141 LNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKED 200
Query: 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE 374
VF+W MI GY + +++EL M+ V P VT L LSAC D + + E
Sbjct: 201 VFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHE 260
Query: 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDV--WAALLSSCRLHD 432
+ + +P + +V+ G ++ A++ M + DV W +++
Sbjct: 261 YVS-ECKTEPSLRLENALVNAYAACGEMDIAVRIFRSMKAR---DVISWTSIVKGYVERG 316
Query: 433 DVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD----- 487
++++A ++ + DR + + L AG ++ E+ +M+ G++ D
Sbjct: 317 NLKLARTYFDQ---MPVRDRISWTIMIDGYL-RAGCFNESLEIFREMQSAGMIPDEFTMV 372
Query: 488 ---TGCSWVGT 495
T C+ +G+
Sbjct: 373 SVLTACAHLGS 383
>sp|Q9STF3|PP265_ARATH Pentatricopeptide repeat-containing protein At3g46790,
chloroplastic OS=Arabidopsis thaliana GN=CRR2 PE=2 SV=1
Length = 657
Score = 261 bits (666), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 144/437 (32%), Positives = 242/437 (55%), Gaps = 11/437 (2%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
L++H HI G + ++ KL+ ++ G++ YA ++FD+ +RT+ +N +
Sbjct: 96 ALRVHRHILDNGSDQDPFLATKLIGMYSDLGSVDYARKVFDKTRKRTIYVWNALFRALTL 155
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL-GRMVHAQILKCDV 182
G EE L L K+ G D +T++ +LKA C S + + G+ +HA + +
Sbjct: 156 AGHGEEVLGLYWKMNRIGVESDRFTYTYVLKA--CVASECTVNHLMKGKEIHAHLTRRGY 213
Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
+ + T LVD Y + G YA VF M +NV+ ++MI+ + G +A FR+
Sbjct: 214 SSHVYIMTTLVDMYARFGCVDYASYVFGGMPVRNVVSWSAMIACYAKNGKAFEALRTFRE 273
Query: 243 TVEK------DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
+ + + V ++++ + S+ + +H +++ + + SALV MY +
Sbjct: 274 MMRETKDSSPNSVTMVSVLQACA-SLAALEQGKLIHGYILRRGLDSILPVISALVTMYGR 332
Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
CGK++ +RVFD M ++V +W S+I YG +G +A+++F M P VTF+
Sbjct: 333 CGKLEVGQRVFDRMHDRDVVSWNSLISSYGVHGYGKKAIQIFEEMLANGASPTPVTFVSV 392
Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP 416
L AC H GLV++G+ +FE+M RD+ +KP++EHYACMVDLLGRA L++A K V +M +P
Sbjct: 393 LGACSHEGLVEEGKRLFETMWRDHGIKPQIEHYACMVDLLGRANRLDEAAKMVQDMRTEP 452
Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
VW +LL SCR+H +VE+A A+ +F L + G YV L++ A A WD V ++
Sbjct: 453 GPKVWGSLLGSCRIHGNVELAERASRRLFALEPKN-AGNYVLLADIYAEAQMWDEVKRVK 511
Query: 477 EKMKLRGVLKDTGCSWV 493
+ ++ RG+ K G W+
Sbjct: 512 KLLEHRGLQKLPGRCWM 528
>sp|Q9ZVF4|PP140_ARATH Pentatricopeptide repeat-containing protein At2g01510,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=3
SV=1
Length = 584
Score = 260 bits (664), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 162/465 (34%), Positives = 257/465 (55%), Gaps = 15/465 (3%)
Query: 41 NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
PLT L L+ +S P KIHA + +TG ++ +LL + G + YA
Sbjct: 6 TPLTKQMLSELLR--ASSSKPKQLKKIHAIVLRTGFSEKNSLLTQLLENLVVIGDMCYAR 63
Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
Q+FDE+ + + +N + GY++N ESL L +K+ G RPD +T+ ++KA +
Sbjct: 64 QVFDEMHKPRIFLWNTLFKGYVRNQLPFESLLLYKKMRDLGVRPDEFTYPFVVKAISQLG 123
Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
+ G +HA ++K ++ T LV Y+K G+ S A +F+ M K+++
Sbjct: 124 DF-----SCGFALHAHVVKYGFGCLGIVATELVMMYMKFGELSSAEFLFESMQVKDLVAW 178
Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVF 280
+ ++ + G A E F K D V +++ +S +LE+ ++
Sbjct: 179 NAFLAVCVQTGNSAIALEYFNKMC-ADAVQFDSFTVVSMLSACGQLGSLEIGEEIYDRAR 237
Query: 281 FEDVK----LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
E++ + +A +DM+ KCG + AR +F+ M+Q+NV +W++MI GY NG+ +AL
Sbjct: 238 KEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVSWSTMIVGYAMNGDSREALT 297
Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM--ERDYSMKPKMEHYACMVD 394
LF MQ ++PNYVTFLG LSAC HAGLV++G+ F M D +++P+ EHYACMVD
Sbjct: 298 LFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMVQSNDKNLEPRKEHYACMVD 357
Query: 395 LLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG 454
LLGR+G LE+A +F+ +MP +P++ +W ALL +C +H D+ + A+ + + A D
Sbjct: 358 LLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMILGQKVADVLVE-TAPDIGS 416
Query: 455 AYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
+V LSN AAAGKWD V ++R KM+ G K S V E +
Sbjct: 417 YHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKI 461
>sp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g27110
OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2
Length = 691
Score = 260 bits (664), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 147/437 (33%), Positives = 245/437 (56%), Gaps = 16/437 (3%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G +IH K G + + ++ L+ ++ KC L+ A ++F ++P+++L A+N MI GY+
Sbjct: 227 GKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVA 286
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL--GRMVHAQILKCD 181
G + + ++ +++ G RP T + IL A C RS RNL G+ +H +++
Sbjct: 287 KGDSKSCVEILNRMIIEGTRPSQTTLTSILMA--CSRS-----RNLLHGKFIHGYVIRSV 339
Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
V AD + +L+D Y K G+ + A VF + MIS ++S G A E++
Sbjct: 340 VNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYD 399
Query: 242 KTV----EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
+ V + D+V + +++ S + K ++H + ++ D L SAL+DMY+KC
Sbjct: 400 QMVSVGVKPDVVTFTSVLPACS-QLAALEKGKQIHLSISESRLETDELLLSALLDMYSKC 458
Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
G +A R+F+ + +K+V +WT MI YG +G P +AL F MQ+ ++P+ VT L L
Sbjct: 459 GNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVL 518
Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP- 416
SACGHAGL+D+G + F M Y ++P +EHY+CM+D+LGRAG L +A + + + PE
Sbjct: 519 SACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDILGRAGRLLEAYEIIQQTPETSD 578
Query: 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476
N+++ + L S+C LH + + + A + + N D Y+ L N A+ WD+ +R
Sbjct: 579 NAELLSTLFSACCLHLEHSLGDRIARLLVE-NYPDDASTYMVLFNLYASGESWDAARRVR 637
Query: 477 EKMKLRGVLKDTGCSWV 493
KMK G+ K GCSW+
Sbjct: 638 LKMKEMGLRKKPGCSWI 654
Score = 157 bits (398), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 120/497 (24%), Positives = 237/497 (47%), Gaps = 24/497 (4%)
Query: 7 IRSSVFSSTHNRHYTLVPPNQTFPPKLQNYDSLSNPLTAT----SLPSALQHYINSDTPF 62
IRS V+ N + N F L+ + L N + P+ ++ Y F
Sbjct: 67 IRSDVY--IWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYGALGREF 124
Query: 63 YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
G IH + K+G + ++ L+ ++ K + + Q+FDE+P+R ++++N +I+ +
Sbjct: 125 LGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTVISCFY 184
Query: 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
++G+ E++L L ++ SSG P+ + ++ + A C + L R G+ +H + +K
Sbjct: 185 QSGEAEKALELFGRMESSGFEPNSVSLTVAISA---CSRLLWLER--GKEIHRKCVKKGF 239
Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
+ D+ + +ALVD Y K AR VF M K+++ SMI G++++G + EI +
Sbjct: 240 ELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNR 299
Query: 243 TVEKDIVVYNAMIEGYSISIETARKALE---VHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
+ + + ++ +R L +H +I++V D+ + +L+D+Y KCG+
Sbjct: 300 MIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGE 359
Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
+ A VF Q+ +W MI Y GN +A+E++ M V+P+ VTF L A
Sbjct: 360 ANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPA 419
Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
C ++KG++I S+ + ++ + ++D+ + G+ ++A + +P+K D
Sbjct: 420 CSQLAALEKGKQIHLSIS-ESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKK---D 475
Query: 420 V--WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS----VT 473
V W ++S+ H A +E+ K +A+ + AG D +
Sbjct: 476 VVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFS 535
Query: 474 ELREKMKLRGVLKDTGC 490
++R K + +++ C
Sbjct: 536 QMRSKYGIEPIIEHYSC 552
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 107/393 (27%), Positives = 182/393 (46%), Gaps = 17/393 (4%)
Query: 43 LTATSLPSALQHYINSDTPFYGLK-IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQ 101
+ ++ L S L+ NS +K +H I G++ + + L+ ++ C A
Sbjct: 1 MESSKLLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARH 60
Query: 102 MFDELPQRT-LSAYNYMIAGYLKNGQVEESLSLVRKLVS-SGERPDGYTFSMILKASTCC 159
+F+ R+ + +N +++GY KN ++L + ++L++ S PD +TF ++KA
Sbjct: 61 VFENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKAYG-- 118
Query: 160 RSNVPLPRN-LGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI 218
L R LGRM+H ++K D V+ ++LV Y K + VFD M E++V
Sbjct: 119 ----ALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVA 174
Query: 219 CSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHCQ 274
++IS F G E A E+F + E + V I S + R E+H +
Sbjct: 175 SWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGK-EIHRK 233
Query: 275 LIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQA 334
+K F D + SALVDMY KC ++ AR VF M +K++ W SMI GY G+
Sbjct: 234 CVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSC 293
Query: 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394
+E+ M +P+ T L AC + + G+ I + R + + ++D
Sbjct: 294 VEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSV-VNADIYVNCSLID 352
Query: 395 LLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
L + G A + V +K ++ W ++SS
Sbjct: 353 LYFKCGEANLA-ETVFSKTQKDVAESWNVMISS 384
>sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910
OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1
Length = 646
Score = 259 bits (662), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 159/492 (32%), Positives = 267/492 (54%), Gaps = 67/492 (13%)
Query: 66 KIHAHITKTGVKPNTNISIKLLIL----HLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
+IHA K+G +T + ++L L L YA ++F+++PQR ++N +I G+
Sbjct: 41 QIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWNTIIRGF 100
Query: 122 LKNGQVEE--SLSLVRKLVSSG-ERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
++ + + +++L +++S P+ +TF +LKA C ++ G+ +H L
Sbjct: 101 SESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKA--CAKTG---KIQEGKQIHGLAL 155
Query: 179 KCDVKADD---------------------------------------------VLYTALV 193
K D+ VL+ ++
Sbjct: 156 KYGFGGDEFVMSNLVRMYVMCGFMKDARVLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMI 215
Query: 194 DSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI----V 249
D Y++ G AR++FD M +++V+ +MISG+ GF +DA E+FR+ + DI V
Sbjct: 216 DGYMRLGDCKAARMLFDKMRQRSVVSWNTMISGYSLNGFFKDAVEVFREMKKGDIRPNYV 275
Query: 250 VYNAMIEGYSI--SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVF 307
+++ S S+E + L ++ + + +DV LGSAL+DMY+KCG I+ A VF
Sbjct: 276 TLVSVLPAISRLGSLELG-EWLHLYAE-DSGIRIDDV-LGSALIDMYSKCGIIEKAIHVF 332
Query: 308 DHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367
+ + ++NV TW++MI+G+ +G A++ FC M++ V+P+ V ++ L+AC H GLV+
Sbjct: 333 ERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLTACSHGGLVE 392
Query: 368 KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSS 427
+GR F M ++P++EHY CMVDLLGR+G L++A +F+L MP KP+ +W ALL +
Sbjct: 393 EGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKPDDVIWKALLGA 452
Query: 428 CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487
CR+ +VEM AN + + +D GAYVALSN A+ G W V+E+R +MK + + KD
Sbjct: 453 CRMQGNVEMGKRVANILMDMVPHD-SGAYVALSNMYASQGNWSEVSEMRLRMKEKDIRKD 511
Query: 488 TGCSWVGTESGL 499
GCS + + L
Sbjct: 512 PGCSLIDIDGVL 523
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 7/116 (6%)
Query: 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG----KIDDARRVFDHMQQKNVFTWT 319
T R ++H IK+ D + ++ A +D A ++F+ M Q+N F+W
Sbjct: 35 TIRDLSQIHAVFIKSGQMRDTLAAAEILRFCATSDLHHRDLDYAHKIFNQMPQRNCFSWN 94
Query: 320 SMIDGYGKNGNPNQ--ALELFC-MMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372
++I G+ ++ A+ LF MM + V+PN TF L AC G + +G++I
Sbjct: 95 TIIRGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQI 150
Score = 52.8 bits (125), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 56/284 (19%), Positives = 120/284 (42%), Gaps = 52/284 (18%)
Query: 35 NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
NY +L + L A S +L+ G +H + +G++ + + L+ ++ KCG
Sbjct: 273 NYVTLVSVLPAISRLGSLE---------LGEWLHLYAEDSGIRIDDVLGSALIDMYSKCG 323
Query: 95 ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
++ A +F+ LP+ + ++ MI G+ +GQ +++ K+ +G RP + +L
Sbjct: 324 IIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCFCKMRQAGVRPSDVAYINLLT 383
Query: 155 ASTCCRSNV------------------PLPRNLGRMV------------HAQILKCDVKA 184
A C + P + G MV IL +K
Sbjct: 384 A--CSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGRSGLLDEAEEFILNMPIKP 441
Query: 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIFR 241
DDV++ AL+ + G + V +++++ + ++ + + SQG + E+
Sbjct: 442 DDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVALSNMYASQGNWSEVSEMRL 501
Query: 242 KTVEKDI--------VVYNAMIEGYSISIETARKALEVHCQLIK 277
+ EKDI + + ++ + + ++ KA E++ L++
Sbjct: 502 RMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSMLVE 545
>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610
OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1
Length = 868
Score = 259 bits (662), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 148/456 (32%), Positives = 254/456 (55%), Gaps = 15/456 (3%)
Query: 43 LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
L+ +S S ++ N + ++H + K G + NI L++ + KC A+ A ++
Sbjct: 293 LSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALRL 352
Query: 103 FDELP-QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS 161
F E+ + ++ MI+G+L+N EE++ L ++ G RP+ +T+S+IL A
Sbjct: 353 FKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTA------ 406
Query: 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
LP VHAQ++K + + + TAL+D+YVK GK A VF + +K+++ +
Sbjct: 407 ---LPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWS 463
Query: 222 SMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLIK 277
+M++G+ G E A ++F + + I +++++ + + + + + H IK
Sbjct: 464 AMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIK 523
Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
+ + + SAL+ MYAK G I+ A VF ++K++ +W SMI GY ++G +AL++
Sbjct: 524 SRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDV 583
Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
F M++ V+ + VTF+G +AC HAGLV++G + F+ M RD + P EH +CMVDL
Sbjct: 584 FKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYS 643
Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457
RAG LE+A+K + MP S +W +L++CR+H E+ +AA +I + D AYV
Sbjct: 644 RAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKIIAMKPED-SAAYV 702
Query: 458 ALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
LSN A +G W ++R+ M R V K+ G SW+
Sbjct: 703 LLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWI 738
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 98/400 (24%), Positives = 187/400 (46%), Gaps = 38/400 (9%)
Query: 62 FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
+G ++H K G + ++ L+ ++K K ++FDE+ +R + + +I+GY
Sbjct: 110 LFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGY 169
Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
+N +E L+L ++ + G +P+ +TF+ L V G VH ++K
Sbjct: 170 ARNSMNDEVLTLFMRMQNEGTQPNSFTFAAAL--GVLAEEGVG---GRGLQVHTVVVKNG 224
Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
+ + +L++ Y+K G ARI+FD K+V+ SMISG+ + G +A +F
Sbjct: 225 LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFY 284
Query: 242 KTVEKDIVVYN---AMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298
+ + A + +++ R ++HC ++K F D + +AL+ Y+KC
Sbjct: 285 SMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCT 344
Query: 299 KIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
+ DA R+F + NV +WT+MI G+ +N +A++LF M+ V+PN T+ L
Sbjct: 345 AMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVIL 404
Query: 358 SACG-------HAGLV----DKGREIFESMERDYSMKPKMEH---------------YAC 391
+A HA +V ++ + ++ Y K+E ++
Sbjct: 405 TALPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSA 464
Query: 392 MVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSC 428
M+ + G E A+K E+ + KPN ++++L+ C
Sbjct: 465 MLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVC 504
Score = 122 bits (306), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 79/269 (29%), Positives = 135/269 (50%), Gaps = 12/269 (4%)
Query: 99 AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAS-T 157
A +FD+ P R +Y ++ G+ ++G+ +E+ L + G D FS +LK S T
Sbjct: 46 AHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLKVSAT 105
Query: 158 CCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
C GR +H Q +K D + T+LVD+Y+KG R VFD M E+NV
Sbjct: 106 LC------DELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNV 159
Query: 218 ICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETARKALEVHC 273
+ T++ISG+ ++ +F + + + + A + G + L+VH
Sbjct: 160 VTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTFAAAL-GVLAEEGVGGRGLQVHT 218
Query: 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333
++KN + + + ++L+++Y KCG + AR +FD + K+V TW SMI GY NG +
Sbjct: 219 VVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLE 278
Query: 334 ALELFCMMQECCVQPNYVTFLGALSACGH 362
AL +F M+ V+ + +F + C +
Sbjct: 279 ALGMFYSMRLNYVRLSESSFASVIKLCAN 307
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/209 (28%), Positives = 113/209 (54%), Gaps = 7/209 (3%)
Query: 222 SMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIK 277
S++ GF G ++A+ +F R +E D +++++++ S ++ ++HCQ IK
Sbjct: 63 SLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFSSVLK-VSATLCDELFGRQLHCQCIK 121
Query: 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALEL 337
F +DV +G++LVD Y K D R+VFD M+++NV TWT++I GY +N ++ L L
Sbjct: 122 FGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTL 181
Query: 338 FCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397
F MQ QPN TF AL G+ +G ++ + ++ + + +++L
Sbjct: 182 FMRMQNEGTQPNSFTFAAALGVLAEEGVGGRGLQVHTVVVKN-GLDKTIPVSNSLINLYL 240
Query: 398 RAGSLEQALKFVLEMPEKPNSDVWAALLS 426
+ G++ +A + + + E + W +++S
Sbjct: 241 KCGNVRKA-RILFDKTEVKSVVTWNSMIS 268
>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650
OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
Length = 1064
Score = 259 bits (661), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 153/459 (33%), Positives = 247/459 (53%), Gaps = 15/459 (3%)
Query: 47 SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
+ PS L+ I G +IH+ I KT + N + L+ ++ K G L A +
Sbjct: 492 TYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRF 551
Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
+ + ++ MIAGY + +++L+ R+++ G R D + A + C L
Sbjct: 552 AGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLT---NAVSACAGLQALK 608
Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
G+ +HAQ +D ALV Y + GK + + F+ + I +++SG
Sbjct: 609 E--GQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSG 666
Query: 227 FMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSISIETA--RKALEVHCQLIKNVF 280
F G E+A +F R+ ++ + + + ++ S ETA ++ +VH + K +
Sbjct: 667 FQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAAS---ETANMKQGKQVHAVITKTGY 723
Query: 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCM 340
+ ++ +AL+ MYAKCG I DA + F + KN +W ++I+ Y K+G ++AL+ F
Sbjct: 724 DSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQ 783
Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
M V+PN+VT +G LSAC H GLVDKG FESM +Y + PK EHY C+VD+L RAG
Sbjct: 784 MIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAG 843
Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460
L +A +F+ EMP KP++ VW LLS+C +H ++E+ AA+ + +L D YV LS
Sbjct: 844 LLSRAKEFIQEMPIKPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPED-SATYVLLS 902
Query: 461 NTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESGL 499
N A + KWD+ R+KMK +GV K+ G SW+ ++ +
Sbjct: 903 NLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSI 941
Score = 145 bits (366), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 104/411 (25%), Positives = 198/411 (48%), Gaps = 17/411 (4%)
Query: 60 TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIA 119
T F G ++HA+ TK G N I LL L+ KC ++ A F E + +N M+
Sbjct: 404 TLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLV 463
Query: 120 GYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
Y + S + R++ P+ YT+ ILK TC R LG +H+QI+K
Sbjct: 464 AYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILK--TCIRLG---DLELGEQIHSQIIK 518
Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
+ + + + + L+D Y K GK A + K+V+ T+MI+G+ F + A
Sbjct: 519 TNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTT 578
Query: 240 FRKTVEK-----DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMY 294
FR+ +++ ++ + NA+ ++ ++ ++H Q + F D+ +ALV +Y
Sbjct: 579 FRQMLDRGIRSDEVGLTNAV--SACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLY 636
Query: 295 AKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354
++CGKI+++ F+ + + W +++ G+ ++GN +AL +F M + N TF
Sbjct: 637 SRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFG 696
Query: 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
A+ A + +G+++ + + + E ++ + + GS+ A K LE+
Sbjct: 697 SAVKAASETANMKQGKQVHAVITKT-GYDSETEVCNALISMYAKCGSISDAEKQFLEVST 755
Query: 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465
K N W A++++ H A + +++ +++N RP +V L L+A
Sbjct: 756 K-NEVSWNAIINAYSKHGFGSEALDSFDQM--IHSNVRPN-HVTLVGVLSA 802
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 106/380 (27%), Positives = 184/380 (48%), Gaps = 21/380 (5%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G K+H+ I K G+ N +S KL +L G L A ++FDE+P+RT+ +N MI
Sbjct: 104 GRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELAS 163
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
+ E L ++VS P+ TFS +L+A CR + ++ +HA+IL ++
Sbjct: 164 RNLIGEVFGLFVRMVSENVTPNEGTFSGVLEA---CRGG-SVAFDVVEQIHARILYQGLR 219
Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
V+ L+D Y + G AR VFD + K+ +MISG +A +F
Sbjct: 220 DSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLF--- 276
Query: 244 VEKDIVVYNAMIEGYSIS--------IETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
D+ V M Y+ S IE+ ++H ++K F D + +ALV +Y
Sbjct: 277 --CDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYF 334
Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
G + A +F +M Q++ T+ ++I+G + G +A+ELF M ++P+ T
Sbjct: 335 HLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTLAS 394
Query: 356 ALSACGHAGLVDKGREIFE-SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414
+ AC G + +G+++ + + ++ K+E +++L + +E AL + LE E
Sbjct: 395 LVVACSADGTLFRGQQLHAYTTKLGFASNNKIE--GALLNLYAKCADIETALDYFLE-TE 451
Query: 415 KPNSDVWAALLSSCRLHDDV 434
N +W +L + L DD+
Sbjct: 452 VENVVLWNVMLVAYGLLDDL 471
Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 91/356 (25%), Positives = 163/356 (45%), Gaps = 15/356 (4%)
Query: 66 KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
+IHA I G++ +T + L+ L+ + G + A ++FD L + S++ MI+G KN
Sbjct: 208 QIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNE 267
Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
E++ L + G P Y FS +L A C+ L +G +H +LK +D
Sbjct: 268 CEAEAIRLFCDMYVLGIMPTPYAFSSVLSA---CKKIESLE--IGEQLHGLVLKLGFSSD 322
Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT-- 243
+ ALV Y G A +F M +++ + ++I+G G+ E A E+F++
Sbjct: 323 TYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHL 382
Query: 244 --VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID 301
+E D +++ S T + ++H K F + K+ AL+++YAKC I+
Sbjct: 383 DGLEPDSNTLASLVVACSAD-GTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIE 441
Query: 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG 361
A F + +NV W M+ YG + + +F MQ + PN T+ L C
Sbjct: 442 TALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 501
Query: 362 HAGLVDKGREIFESMERDYSMKPKMEHYAC--MVDLLGRAGSLEQALKFVLEMPEK 415
G ++ G +I + + ++ Y C ++D+ + G L+ A ++ K
Sbjct: 502 RLGDLELGEQIHSQIIK---TNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGK 554
Score = 100 bits (248), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 97/371 (26%), Positives = 160/371 (43%), Gaps = 51/371 (13%)
Query: 127 VEESLSLVRKLVSS----GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182
+ E S K + S G RP+ T +L+ C ++N L GR +H+QILK +
Sbjct: 61 ISEDESFQEKRIDSVENRGIRPNHQTLKWLLEG--CLKTNGSLDE--GRKLHSQILKLGL 116
Query: 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
++ L L D Y+ G A VFD M E+ + MI S+ + + +F +
Sbjct: 117 DSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVR 176
Query: 243 TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK----LGSALVDMYAKCG 298
V +++ G + A +V Q+ + ++ ++ + + L+D+Y++ G
Sbjct: 177 MVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNG 236
Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
+D ARRVFD ++ K+ +W +MI G KN +A+ LFC M + P F LS
Sbjct: 237 FVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLS 296
Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
AC + ES+E +G EQ VL++ ++
Sbjct: 297 AC----------KKIESLE------------------IG-----EQLHGLVLKLGFSSDT 323
Query: 419 DVWAALLSSCRLHDDVEMAN-IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
V AL+ S H + N I+A IF + Y L N L+ G + EL +
Sbjct: 324 YVCNALV-SLYFH----LGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFK 378
Query: 478 KMKLRGVLKDT 488
+M L G+ D+
Sbjct: 379 RMHLDGLEPDS 389
>sp|Q9SR82|PP219_ARATH Putative pentatricopeptide repeat-containing protein At3g08820
OS=Arabidopsis thaliana GN=PCMP-H84 PE=3 SV=1
Length = 685
Score = 259 bits (661), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 145/457 (31%), Positives = 243/457 (53%), Gaps = 9/457 (1%)
Query: 43 LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQM 102
L + P L+ + + G+ +H+ + K G + LL ++ G L A ++
Sbjct: 109 LHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNHDVAAMTSLLSIYSGSGRLNDAHKL 168
Query: 103 FDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSN 162
FDE+P R++ + + +GY +G+ E++ L +K+V G +PD Y +L A C
Sbjct: 169 FDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVEMGVKPDSYFIVQVLSA--CVHVG 226
Query: 163 VPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTS 222
+ G + + + +++ + + T LV+ Y K GK AR VFD M+EK+++ ++
Sbjct: 227 ---DLDSGEWIVKYMEEMEMQKNSFVRTTLVNLYAKCGKMEKARSVFDSMVEKDIVTWST 283
Query: 223 MISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIET--ARKALEVHCQLI-KNV 279
MI G+ S F ++ E+F + +++++ I G+ S + A E LI ++
Sbjct: 284 MIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGFLSSCASLGALDLGEWGISLIDRHE 343
Query: 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFC 339
F ++ + +AL+DMYAKCG + VF M++K++ + I G KNG+ + +F
Sbjct: 344 FLTNLFMANALIDMYAKCGAMARGFEVFKEMKEKDIVIMNAAISGLAKNGHVKLSFAVFG 403
Query: 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399
++ + P+ TFLG L C HAGL+ G F ++ Y++K +EHY CMVDL GRA
Sbjct: 404 QTEKLGISPDGSTFLGLLCGCVHAGLIQDGLRFFNAISCVYALKRTVEHYGCMVDLWGRA 463
Query: 400 GSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVAL 459
G L+ A + + +MP +PN+ VW ALLS CRL D ++A E+ L + G YV L
Sbjct: 464 GMLDDAYRLICDMPMRPNAIVWGALLSGCRLVKDTQLAETVLKELIALEPWN-AGNYVQL 522
Query: 460 SNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
SN + G+WD E+R+ M +G+ K G SW+ E
Sbjct: 523 SNIYSVGGRWDEAAEVRDMMNKKGMKKIPGYSWIELE 559
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 101/359 (28%), Positives = 179/359 (49%), Gaps = 21/359 (5%)
Query: 66 KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
+IH + + +T + LL L KY+ +F + YN +I G++ N
Sbjct: 31 QIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVNNH 90
Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
E+L L + G G+TF ++LKA C R++ R LG +H+ ++KC D
Sbjct: 91 LFHETLDLFLSIRKHGLYLHGFTFPLVLKA--CTRAS---SRKLGIDLHSLVVKCGFNHD 145
Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
T+L+ Y G+ + A +FD + +++V+ T++ SG+ + G +A ++F+K VE
Sbjct: 146 VAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMVE 205
Query: 246 KDI---------VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296
+ V+ + G S E K +E ++ KN F + LV++YAK
Sbjct: 206 MGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYME-EMEMQKNSFVR-----TTLVNLYAK 259
Query: 297 CGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356
CGK++ AR VFD M +K++ TW++MI GY N P + +ELF M + ++P+ + +G
Sbjct: 260 CGKMEKARSVFDSMVEKDIVTWSTMIQGYASNSFPKEGIELFLQMLQENLKPDQFSIVGF 319
Query: 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
LS+C G +D G ++R + + ++D+ + G++ + + EM EK
Sbjct: 320 LSSCASLGALDLGEWGISLIDR-HEFLTNLFMANALIDMYAKCGAMARGFEVFKEMKEK 377
Score = 99.4 bits (246), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 125/253 (49%), Gaps = 14/253 (5%)
Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
+ +H ++ + D L L+ + +T Y+ ++F N+ S+I+GF++
Sbjct: 30 KQIHVSLINHHLHHDTFLVNLLLKRTLFFRQTKYSYLLFSHTQFPNIFLYNSLINGFVNN 89
Query: 231 GFVEDAEEIFRKTVEKDIVVYNAMIEGYSISI-------ETARK-ALEVHCQLIKNVFFE 282
+ ++F I + + G++ + ++RK +++H ++K F
Sbjct: 90 HLFHETLDLFLS-----IRKHGLYLHGFTFPLVLKACTRASSRKLGIDLHSLVVKCGFNH 144
Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
DV ++L+ +Y+ G+++DA ++FD + ++V TWT++ GY +G +A++LF M
Sbjct: 145 DVAAMTSLLSIYSGSGRLNDAHKLFDEIPDRSVVTWTALFSGYTTSGRHREAIDLFKKMV 204
Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402
E V+P+ + LSAC H G +D G I + ME + M+ +V+L + G +
Sbjct: 205 EMGVKPDSYFIVQVLSACVHVGDLDSGEWIVKYME-EMEMQKNSFVRTTLVNLYAKCGKM 263
Query: 403 EQALKFVLEMPEK 415
E+A M EK
Sbjct: 264 EKARSVFDSMVEK 276
>sp|Q9ZQ74|PP146_ARATH Pentatricopeptide repeat-containing protein At2g03380,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-E47 PE=3
SV=1
Length = 689
Score = 258 bits (660), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 151/438 (34%), Positives = 239/438 (54%), Gaps = 22/438 (5%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G H + K+G++ ++ + LL +++KCG + A ++F+E L + MI GY
Sbjct: 261 GKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTH 320
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNL--GRMVHAQILKCD 181
NG V E+LSL +K+ +P+ T + +L S L NL GR VH +K
Sbjct: 321 NGSVNEALSLFQKMKGVEIKPNCVTIASVL-------SGCGLIENLELGRSVHGLSIKVG 373
Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
+ D + ALV Y K + A+ VF+M EK+++ S+ISGF G + +A +F
Sbjct: 374 I-WDTNVANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFH 432
Query: 242 KTVEKDIV--------VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDM 293
+ + + +++A S+++ ++ A V + + V +G+AL+D
Sbjct: 433 RMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLAS---SSVHVGTALLDF 489
Query: 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353
YAKCG AR +FD +++KN TW++MI GYGK G+ +LELF M + +PN TF
Sbjct: 490 YAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTF 549
Query: 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413
LSACGH G+V++G++ F SM +DY+ P +HY CMVD+L RAG LEQAL + +MP
Sbjct: 550 TSILSACGHTGMVNEGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMP 609
Query: 414 EKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473
+P+ + A L C +H ++ I ++ L+ +D YV +SN A+ G+W+
Sbjct: 610 IQPDVRCFGAFLHGCGMHSRFDLGEIVIKKMLDLHPDD-ASYYVLVSNLYASDGRWNQAK 668
Query: 474 ELREKMKLRGVLKDTGCS 491
E+R MK RG+ K G S
Sbjct: 669 EVRNLMKQRGLSKIAGHS 686
Score = 157 bits (397), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 127/464 (27%), Positives = 214/464 (46%), Gaps = 58/464 (12%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G KIH + K N ++ LL ++ KCG +K A ++F+++ R + + MIAGY+K
Sbjct: 161 GKKIHCQLVKVPSFDNVVLT-GLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVK 219
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
N EE L L ++ + + YT+ ++ A C L + G+ H ++K ++
Sbjct: 220 NDLCEEGLVLFNRMRENNVLGNEYTYGTLIMA---CTKLSALHQ--GKWFHGCLVKSGIE 274
Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
L T+L+D YVK G S AR VF+ +++ T+MI G+ G V +A +F+K
Sbjct: 275 LSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKM 334
Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
++ + V +++ G + IE VH IK V D + +ALV MYAKC +
Sbjct: 335 KGVEIKPNCVTIASVLSGCGL-IENLELGRSVHGLSIK-VGIWDTNVANALVHMYAKCYQ 392
Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
DA+ VF+ +K++ W S+I G+ +NG+ ++AL LF M V PN VT SA
Sbjct: 393 NRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSA 452
Query: 360 CGHAGLVDKG-------------------------------------REIFESMERDYSM 382
C G + G R IF+++E ++
Sbjct: 453 CASLGSLAVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIFDTIEEKNTI 512
Query: 383 KPKMEHYACMVDLLGRAGSLEQALKFVLEM---PEKPNSDVWAALLSSCRLHDDVEMANI 439
++ M+ G+ G +L+ EM +KPN + ++LS+C V
Sbjct: 513 T-----WSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVNEGKK 567
Query: 440 AANEIFK-LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
+ ++K N Y + + LA AG+ + ++ EKM ++
Sbjct: 568 YFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQ 611
Score = 154 bits (388), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 114/370 (30%), Positives = 179/370 (48%), Gaps = 22/370 (5%)
Query: 18 RHYTLVPPNQ-TFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGL----------K 66
R TL P + FPP+ ++ ++ + + HY S F L +
Sbjct: 3 RSITLSPTRRFGFPPRCVSFTTIKELILTEENDGSSLHYAASSPCFLLLSKCTNIDSLRQ 62
Query: 67 IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
H +T G+ + +I+ KL+ L+ G K A +FD++P+ + M+ Y N +
Sbjct: 63 SHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKE 122
Query: 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD 186
E + L L+ G R D FS LKA T + + G+ +H Q++K D+
Sbjct: 123 SVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQD-----LDNGKKIHCQLVKVP-SFDN 176
Query: 187 VLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
V+ T L+D Y K G+ A VF+ + +NV+C TSMI+G++ E+ +F + E
Sbjct: 177 VVLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMREN 236
Query: 247 DIVVYNAMIEGYSISIETARKALE----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
+ V+ N G I T AL H L+K+ L ++L+DMY KCG I +
Sbjct: 237 N-VLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISN 295
Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
ARRVF+ ++ WT+MI GY NG+ N+AL LF M+ ++PN VT LS CG
Sbjct: 296 ARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGL 355
Query: 363 AGLVDKGREI 372
++ GR +
Sbjct: 356 IENLELGRSV 365
Score = 91.3 bits (225), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/304 (27%), Positives = 136/304 (44%), Gaps = 39/304 (12%)
Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFM-- 228
R H + + D + T LV Y G T AR+VFD + E + M+ +
Sbjct: 61 RQSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFYLWKVMLRCYCLN 120
Query: 229 --SQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
S V+ + + + D +V++ ++ + ++ ++HCQL+K F++V L
Sbjct: 121 KESVEVVKLYDLLMKHGFRYDDIVFSKALKACT-ELQDLDNGKKIHCQLVKVPSFDNVVL 179
Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
+ L+DMYAKCG+I A +VF+ + +NV WTSMI GY KN + L LF M+E V
Sbjct: 180 -TGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNV 238
Query: 347 QPNYVTFLGALSACG-----------HAGLVDKGREIFESMER----------DYSMKPK 385
N T+ + AC H LV G E+ + D S +
Sbjct: 239 LGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARR 298
Query: 386 MEHYACMVDLL---------GRAGSLEQALKFVLEMPE---KPNSDVWAALLSSCRLHDD 433
+ + VDL+ GS+ +AL +M KPN A++LS C L ++
Sbjct: 299 VFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIEN 358
Query: 434 VEMA 437
+E+
Sbjct: 359 LELG 362
>sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3
SV=1
Length = 632
Score = 258 bits (660), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 159/472 (33%), Positives = 253/472 (53%), Gaps = 49/472 (10%)
Query: 65 LKIHAHITKTGVKPNTNISIKLLILH---LKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
L+IHA I + + + + L LH G ++++ +F + L + I
Sbjct: 46 LQIHAAILRHNLLLHPRYPVLNLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTA 105
Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD 181
NG +++ L +L+SS P+ +TFS +LK +C + G+++H +LK
Sbjct: 106 SINGLKDQAFLLYVQLLSSEINPNEFTFSSLLK--SCSTKS-------GKLIHTHVLKFG 156
Query: 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
+ D + T LVD Y KGG A+ VFD M E++++ ST+MI+ + QG VE A +F
Sbjct: 157 LGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFD 216
Query: 242 KTVEKDIVVYNAMIEGYS-------------------------ISIETARKA------LE 270
E+DIV +N MI+GY+ I++ A A LE
Sbjct: 217 SMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALE 276
Query: 271 ----VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326
+H + + +VK+ + L+DMY+KCG +++A VF+ +K++ W +MI GY
Sbjct: 277 TGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYA 336
Query: 327 KNGNPNQALELFCMMQECC-VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
+G AL LF MQ +QP +TF+G L AC HAGLV++G IFESM ++Y +KPK
Sbjct: 337 MHGYSQDALRLFNEMQGITGLQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPK 396
Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIF 445
+EHY C+V LLGRAG L++A + + M +S +W+++L SC+LH D + A +
Sbjct: 397 IEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLI 456
Query: 446 KLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTES 497
LN + G YV LSN A+ G ++ V ++R MK +G++K+ G S + E+
Sbjct: 457 GLNIKN-SGIYVLLSNIYASVGDYEGVAKVRNLMKEKGIVKEPGISTIEIEN 507
Score = 72.0 bits (175), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 99/211 (46%), Gaps = 37/211 (17%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL------------ 111
G IH H+ K G+ + ++ L+ ++ K G + A ++FD +P+R+L
Sbjct: 145 GKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSAQKVFDRMPERSLVSSTAMITCYAK 204
Query: 112 -------------------SAYNYMIAGYLKNGQVEESLSLVRKLVSSGE-RPDGYTFSM 151
++N MI GY ++G ++L L +KL++ G+ +PD T
Sbjct: 205 QGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLAEGKPKPDEIT--- 261
Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
++ A + C L GR +H + ++ + + T L+D Y K G A +VF+
Sbjct: 262 VVAALSACSQIGAL--ETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFND 319
Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIFRK 242
K+++ +MI+G+ G+ +DA +F +
Sbjct: 320 TPRKDIVAWNAMIAGYAMHGYSQDALRLFNE 350
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G IH + + ++ N + L+ ++ KCG+L+ A +F++ P++ + A+N MIAGY
Sbjct: 278 GRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAM 337
Query: 124 NGQVEESLSLVRKLVS-SGERPDGYTFSMILKA 155
+G +++L L ++ +G +P TF L+A
Sbjct: 338 HGYSQDALRLFNEMQGITGLQPTDITFIGTLQA 370
>sp|Q9LW63|PP251_ARATH Putative pentatricopeptide repeat-containing protein At3g23330
OS=Arabidopsis thaliana GN=PCMP-H32 PE=3 SV=1
Length = 715
Score = 258 bits (658), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 130/397 (32%), Positives = 239/397 (60%), Gaps = 11/397 (2%)
Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
++F+ +P++ + +YN +IAGY ++G E++L +VR++ ++ +PD +T S +L +
Sbjct: 197 RVFEVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFS--- 253
Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
V + + G+ +H +++ + +D + ++LVD Y K + + VF + ++ I
Sbjct: 254 EYVDVIK--GKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISW 311
Query: 221 TSMISGFMSQGFVEDAEEIFRKTVEKDI----VVYNAMIEGYSISIETARKALEVHCQLI 276
S+++G++ G +A +FR+ V + V ++++I + + T ++H ++
Sbjct: 312 NSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACA-HLATLHLGKQLHGYVL 370
Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALE 336
+ F ++ + SALVDMY+KCG I AR++FD M + +WT++I G+ +G+ ++A+
Sbjct: 371 RGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVS 430
Query: 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396
LF M+ V+PN V F+ L+AC H GLVD+ F SM + Y + ++EHYA + DLL
Sbjct: 431 LFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLL 490
Query: 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY 456
GRAG LE+A F+ +M +P VW+ LLSSC +H ++E+A A +IF +++ + GAY
Sbjct: 491 GRAGKLEEAYNFISKMCVEPTGSVWSTLLSSCSVHKNLELAEKVAEKIFTVDSENM-GAY 549
Query: 457 VALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
V + N A+ G+W + +LR +M+ +G+ K CSW+
Sbjct: 550 VLMCNMYASNGRWKEMAKLRLRMRKKGLRKKPACSWI 586
Score = 116 bits (290), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 117/502 (23%), Positives = 209/502 (41%), Gaps = 87/502 (17%)
Query: 66 KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
++HA +T +T+ SI ++ ++ L A +F L + A+ +I +
Sbjct: 26 QLHAQFIRTQSLSHTSASI-VISIYTNLKLLHEALLLFKTLKSPPVLAWKSVIRCFTDQS 84
Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
++L+ ++ +SG PD F +LK+ T + + G VH I++ + D
Sbjct: 85 LFSKALASFVEMRASGRCPDHNVFPSVLKSCT-----MMMDLRFGESVHGFIVRLGMDCD 139
Query: 186 DVLYTALVDSYVK----GGKTSYA--------------------------------RIVF 209
AL++ Y K G K S R VF
Sbjct: 140 LYTGNALMNMYAKLLGMGSKISVGNVFDEMPQRTSNSGDEDVKAETCIMPFGIDSVRRVF 199
Query: 210 DMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT----VEKDIVVYNAMIEGYSISIETA 265
++M K+V+ ++I+G+ G EDA + R+ ++ D ++++ +S ++
Sbjct: 200 EVMPRKDVVSYNTIIAGYAQSGMYEDALRMVREMGTTDLKPDSFTLSSVLPIFSEYVDVI 259
Query: 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGY 325
K E+H +I+ DV +GS+LVDMYAK +I+D+ RVF + ++ +W S++ GY
Sbjct: 260 -KGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSERVFSRLYCRDGISWNSLVAGY 318
Query: 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK 385
+NG N+AL LF M V+P V F + AC H + G+++ + R
Sbjct: 319 VQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPACAHLATLHLGKQLHGYVLRG-GFGSN 377
Query: 386 MEHYACMVDLLGRAGSLEQALKFVLEM--------------------------------- 412
+ + +VD+ + G+++ A K M
Sbjct: 378 IFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSWTAIIMGHALHGHGHEAVSLFEEMKR 437
Query: 413 -PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL-NANDRPGAYVALSNTLAAAGKWD 470
KPN + A+L++C V+ A N + K+ N Y A+++ L AGK +
Sbjct: 438 QGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLE 497
Query: 471 SVTELREKMKLRGVLKDTGCSW 492
KM ++ TG W
Sbjct: 498 EAYNFISKM----CVEPTGSVW 515
Score = 90.5 bits (223), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 87/386 (22%), Positives = 169/386 (43%), Gaps = 62/386 (16%)
Query: 41 NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG 100
+ T +S+ Y++ G +IH ++ + G+ + I L+ ++ K ++ +
Sbjct: 241 DSFTLSSVLPIFSEYVD---VIKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIEDSE 297
Query: 101 QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCR 160
++F L R ++N ++AGY++NG+ E+L L R++V++ +P FS ++ A C
Sbjct: 298 RVFSRLYCRDGISWNSLVAGYVQNGRYNEALRLFRQMVTAKVKPGAVAFSSVIPA---CA 354
Query: 161 SNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICS 220
L +LG+ +H +L+ ++ + +ALVD Y K G AR +FD M + +
Sbjct: 355 HLATL--HLGKQLHGYVLRGGFGSNIFIASALVDMYSKCGNIKAARKIFDRMNVLDEVSW 412
Query: 221 TSMISGFMSQGFVEDA----EEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLI 276
T++I G G +A EE+ R+ V+ + V + A++ S
Sbjct: 413 TAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACS----------------- 455
Query: 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-----KNVFTWTSMIDGYGKNGNP 331
G +D+A F+ M + + + + ++ D G+ G
Sbjct: 456 -------------------HVGLVDEAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKL 496
Query: 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESM-ERDYSMKPK-MEHY 389
+A M CV+P + LS+C V K E+ E + E+ +++ + M Y
Sbjct: 497 EEAYNFISKM---CVEPTGSVWSTLLSSCS----VHKNLELAEKVAEKIFTVDSENMGAY 549
Query: 390 ACMVDLLGRAGSLEQALKFVLEMPEK 415
M ++ G ++ K L M +K
Sbjct: 550 VLMCNMYASNGRWKEMAKLRLRMRKK 575
>sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405
OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1
Length = 612
Score = 257 bits (656), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 146/433 (33%), Positives = 233/433 (53%), Gaps = 44/433 (10%)
Query: 96 LKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGE--RPDGYTFSMIL 153
L YA Q+ D + TL A N MI + K+ E+S R+++SSG +PD YT + ++
Sbjct: 56 LDYANQILDRSEKPTLFALNSMIRAHCKSPVPEKSFDFYRRILSSGNDLKPDNYTVNFLV 115
Query: 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213
+A T R R G VH ++ D + T L+ Y + G VF+ +
Sbjct: 116 QACTGLRM-----RETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCHKVFNSIP 170
Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV-- 271
+ +C T+M++ G V A ++F E+D + +NAMI GY+ + +R+AL V
Sbjct: 171 CPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYA-QVGESREALNVFH 229
Query: 272 ---------------------------------HCQLIKNVFFEDVKLGSALVDMYAKCG 298
H + +N V+L + LVD+YAKCG
Sbjct: 230 LMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCG 289
Query: 299 KIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358
++ A VF M++KNV+TW+S ++G NG + LELF +M++ V PN VTF+ L
Sbjct: 290 DMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLR 349
Query: 359 ACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS 418
C G VD+G+ F+SM ++ ++P++EHY C+VDL RAG LE A+ + +MP KP++
Sbjct: 350 GCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHA 409
Query: 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478
VW++LL + R++ ++E+ +A+ ++ +L + GAYV LSN A + WD+V+ +R+
Sbjct: 410 AVWSSLLHASRMYKNLELGVLASKKMLELETANH-GAYVLLSNIYADSNDWDNVSHVRQS 468
Query: 479 MKLRGVLKDTGCS 491
MK +GV K GCS
Sbjct: 469 MKSKGVRKQPGCS 481
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 121/240 (50%), Gaps = 18/240 (7%)
Query: 92 KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSM 151
+CG + +A ++F+ +P+R A+N MI+GY + G+ E+L++ + G + +G
Sbjct: 186 RCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLMQLEGVKVNGVAMIS 245
Query: 152 ILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211
+L A T + + GR H+ I + +K L T LVD Y K G A VF
Sbjct: 246 VLSACTQLGA-----LDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWG 300
Query: 212 MLEKNVICSTSMISGFMSQGFVEDAEEIF----RKTVEKDIVVYNAMIEGYSIS--IETA 265
M EKNV +S ++G GF E E+F + V + V + +++ G S+ ++
Sbjct: 301 MEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEG 360
Query: 266 RKALEVHCQLIKNVFFEDVKLG--SALVDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMI 322
++ H ++N F + +L LVD+YA+ G+++DA + M K + W+S++
Sbjct: 361 QR----HFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAVWSSLL 416
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/149 (21%), Positives = 66/149 (44%), Gaps = 4/149 (2%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G H++I + +K ++ L+ L+ KCG ++ A ++F + ++ + ++ + G
Sbjct: 259 GRWAHSYIERNKIKITVRLATTLVDLYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAM 318
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
NG E+ L L + G P+ TF +L+ + R+ M + ++ ++
Sbjct: 319 NGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLE 378
Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMM 212
Y LVD Y + G+ A + M
Sbjct: 379 H----YGCLVDLYARAGRLEDAVSIIQQM 403
>sp|Q9FK33|PP427_ARATH Pentatricopeptide repeat-containing protein At5g50390,
chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2
SV=1
Length = 701
Score = 256 bits (655), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 139/434 (32%), Positives = 244/434 (56%), Gaps = 15/434 (3%)
Query: 66 KIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNG 125
+++ + G +P + ++L++H+KCG + A ++FDE+P+R L +Y +I+G++ G
Sbjct: 144 RVYGFMMSNGFEPEQYMMNRILLMHVKCGMIIDARRLFDEIPERNLYSYYSIISGFVNFG 203
Query: 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
E+ L + + + +TF+++L+AS S +G+ +H LK V +
Sbjct: 204 NYVEAFELFKMMWEELSDCETHTFAVMLRASAGLGSIY-----VGKQLHVCALKLGVVDN 258
Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA----EEIFR 241
+ L+D Y K G AR F+ M EK + ++I+G+ G+ E+A ++
Sbjct: 259 TFVSCGLIDMYSKCGDIEDARCAFECMPEKTTVAWNNVIAGYALHGYSEEALCLLYDMRD 318
Query: 242 KTVEKDIVVYNAMIEGYSISIETARKAL--EVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
V D + MI IS + A+ L + H LI+N F ++ +ALVD Y+K G+
Sbjct: 319 SGVSIDQFTLSIMIR---ISTKLAKLELTKQAHASLIRNGFESEIVANTALVDFYSKWGR 375
Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
+D AR VFD + +KN+ +W +++ GY +G A++LF M V PN+VTFL LSA
Sbjct: 376 VDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVKLFEKMIAANVAPNHVTFLAVLSA 435
Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
C ++GL ++G EIF SM + +KP+ HYACM++LLGR G L++A+ F+ P K +
Sbjct: 436 CAYSGLSEQGWEIFLSMSEVHGIKPRAMHYACMIELLGRDGLLDEAIAFIRRAPLKTTVN 495
Query: 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479
+WAALL++CR+ +++E+ + A +++ + ++ G YV + N + GK + E +
Sbjct: 496 MWAALLNACRMQENLELGRVVAEKLYGMGP-EKLGNYVVMYNMYNSMGKTAEAAGVLETL 554
Query: 480 KLRGVLKDTGCSWV 493
+ +G+ C+WV
Sbjct: 555 ESKGLSMMPACTWV 568
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 106/188 (56%), Gaps = 7/188 (3%)
Query: 62 FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121
+ G ++H K GV NT +S L+ ++ KCG ++ A F+ +P++T A+N +IAGY
Sbjct: 241 YVGKQLHVCALKLGVVDNTFVSCGLIDMYSKCGDIEDARCAFECMPEKTTVAWNNVIAGY 300
Query: 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR-NLGRMVHAQILKC 180
+G EE+L L+ + SG D +T S++++ ST L + L + HA +++
Sbjct: 301 ALHGYSEEALCLLYDMRDSGVSIDQFTLSIMIRIST------KLAKLELTKQAHASLIRN 354
Query: 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF 240
+++ V TALVD Y K G+ AR VFD + KN+I +++ G+ + G DA ++F
Sbjct: 355 GFESEIVANTALVDFYSKWGRVDTARYVFDKLPRKNIISWNALMGGYANHGRGTDAVKLF 414
Query: 241 RKTVEKDI 248
K + ++
Sbjct: 415 EKMIAANV 422
Score = 71.2 bits (173), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/243 (25%), Positives = 116/243 (47%), Gaps = 10/243 (4%)
Query: 201 KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIF-----RKTVEKDIVVYNAMI 255
K S +I+ D + K+ + S I + +A E+F R + + + Y+A++
Sbjct: 71 KESKDQILDDTQISKSGVTICSQIEKLVLCNRFREAFELFEILEIRCSFKVGVSTYDALV 130
Query: 256 EGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315
E I +++ R V+ ++ N F + + + ++ M+ KCG I DARR+FD + ++N+
Sbjct: 131 EA-CIRLKSIRCVKRVYGFMMSNGFEPEQYMMNRILLMHVKCGMIIDARRLFDEIPERNL 189
Query: 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES 375
+++ S+I G+ GN +A ELF MM E TF L A G + G+++
Sbjct: 190 YSYYSIISGFVNFGNYVEAFELFKMMWEELSDCETHTFAVMLRASAGLGSIYVGKQLHVC 249
Query: 376 MERDYSMKPKMEHYAC-MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDV 434
+ + +C ++D+ + G +E A MPEK + W +++ LH
Sbjct: 250 ALKLGVVDNTF--VSCGLIDMYSKCGDIEDARCAFECMPEK-TTVAWNNVIAGYALHGYS 306
Query: 435 EMA 437
E A
Sbjct: 307 EEA 309
>sp|O23266|PP308_ARATH Pentatricopeptide repeat-containing protein At4g14050,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H13 PE=2
SV=3
Length = 612
Score = 256 bits (655), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 157/463 (33%), Positives = 245/463 (52%), Gaps = 41/463 (8%)
Query: 67 IHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126
+HAHI K G+ ++ L+ ++ KCGA +A Q+FDE+P R A+ ++ +
Sbjct: 25 LHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQANL 84
Query: 127 VEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD 185
++LS+ + SS RPD + FS ++KA S + GR VH + + D
Sbjct: 85 SGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSI-----DHGRQVHCHFIVSEYAND 139
Query: 186 DVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVE 245
+V+ ++LVD Y K G + A+ VFD + KN I T+M+SG+ G E+A E+FR
Sbjct: 140 EVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILPV 199
Query: 246 KDIVVYNAMIEGY----------SISIETARKAL-------------------------E 270
K++ + A+I G+ S+ E R+ + +
Sbjct: 200 KNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLSSIVGACANLAASIAGRQ 259
Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
VH +I F V + +AL+DMYAKC + A+ +F M+ ++V +WTS+I G ++G
Sbjct: 260 VHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHRDVVSWTSLIVGMAQHGQ 319
Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA 390
+AL L+ M V+PN VTF+G + AC H G V+KGRE+F+SM +DY ++P ++HY
Sbjct: 320 AEKALALYDDMVSHGVKPNEVTFVGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYT 379
Query: 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450
C++DLLGR+G L++A + MP P+ WAALLS+C+ +M A+ +
Sbjct: 380 CLLDLLGRSGLLDEAENLIHTMPFPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKL 439
Query: 451 DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
P Y+ LSN A+A W V+E R K+ V KD G S V
Sbjct: 440 KDPSTYILLSNIYASASLWGKVSEARRKLGEMEVRKDPGHSSV 482
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/217 (29%), Positives = 108/217 (49%), Gaps = 14/217 (6%)
Query: 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG--- 226
+ +HA I+K + L LV+ Y K G S+A VFD M ++ I S+++
Sbjct: 22 AKALHAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLTALNQ 81
Query: 227 --FMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI--SIETARKALEVHCQLIKNVFFE 282
+ + + D V++A+++ + SI+ R +VHC I + +
Sbjct: 82 ANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGR---QVHCHFIVSEYAN 138
Query: 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342
D + S+LVDMYAKCG ++ A+ VFD ++ KN +WT+M+ GY K+G +ALELF ++
Sbjct: 139 DEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYAKSGRKEEALELFRILP 198
Query: 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD 379
N ++ +S +G + +F M R+
Sbjct: 199 ----VKNLYSWTALISGFVQSGKGLEAFSVFTEMRRE 231
Score = 67.8 bits (164), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 77/353 (21%), Positives = 139/353 (39%), Gaps = 67/353 (18%)
Query: 63 YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
+G ++H H + + + L+ ++ KCG L A +FD + + ++ M++GY
Sbjct: 123 HGRQVHCHFIVSEYANDEVVKSSLVDMYAKCGLLNSAKAVFDSIRVKNTISWTAMVSGYA 182
Query: 123 KNGQVEESLSLVRKL---------------VSSGERPDGYT-FSMILKAST------CCR 160
K+G+ EE+L L R L V SG+ + ++ F+ + +
Sbjct: 183 KSGRKEEALELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRERVDILDPLVLS 242
Query: 161 SNVPLPRNL-----GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK 215
S V NL GR VH ++ + + AL+D Y K A+ +F M +
Sbjct: 243 SIVGACANLAASIAGRQVHGLVIALGFDSCVFISNALIDMYAKCSDVIAAKDIFSRMRHR 302
Query: 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQL 275
+V+ TS+I G G EK + +Y+ M+ H
Sbjct: 303 DVVSWTSLIVGMAQHG-----------QAEKALALYDDMVS---------------HGVK 336
Query: 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-----NVFTWTSMIDGYGKNGN 330
V F L+ + G ++ R +F M + ++ +T ++D G++G
Sbjct: 337 PNEVTF------VGLIYACSHVGFVEKGRELFQSMTKDYGIRPSLQHYTCLLDLLGRSGL 390
Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK 383
++A L M P+ T+ LSAC G G I + + + +K
Sbjct: 391 LDEAENLIHTMP---FPPDEPTWAALLSACKRQGRGQMGIRIADHLVSSFKLK 440
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 97/221 (43%), Gaps = 15/221 (6%)
Query: 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMID 323
T KAL H ++K + L + LV++Y KCG A +VFD M ++ W S++
Sbjct: 20 TTAKAL--HAHIVKLGIVQCCPLANTLVNVYGKCGAASHALQVFDEMPHRDHIAWASVLT 77
Query: 324 GYGKNGNPNQAL-ELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF-ESMERDYS 381
+ + L + ++P+ F + AC + G +D GR++ + +Y+
Sbjct: 78 ALNQANLSGKTLSVFSSVGSSSGLRPDDFVFSALVKACANLGSIDHGRQVHCHFIVSEYA 137
Query: 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441
++ + +VD+ + G L A K V + N+ W A++S E A
Sbjct: 138 NDEVVK--SSLVDMYAKCGLLNSA-KAVFDSIRVKNTISWTAMVSGYAKSGRKE----EA 190
Query: 442 NEIFKLNANDRPGAYVALSNTLAAAGK----WDSVTELREK 478
E+F++ ++ AL + +GK + TE+R +
Sbjct: 191 LELFRILPVKNLYSWTALISGFVQSGKGLEAFSVFTEMRRE 231
>sp|Q9S7F4|PP206_ARATH Putative pentatricopeptide repeat-containing protein At2g01510
OS=Arabidopsis thaliana GN=PCMP-H36 PE=3 SV=1
Length = 825
Score = 256 bits (655), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 141/436 (32%), Positives = 239/436 (54%), Gaps = 14/436 (3%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G ++HA TG + ++ ++L + K + +FDE+P+ +YN +I+ Y +
Sbjct: 269 GQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQ 328
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
Q E SL R++ G + F+ +L + S +GR +H Q L
Sbjct: 329 ADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSS-----LQMGRQLHCQALL--AT 381
Query: 184 ADDVLYT--ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241
AD +L+ +LVD Y K A ++F + ++ + T++ISG++ +G ++F
Sbjct: 382 ADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFT 441
Query: 242 K----TVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC 297
K + D + +++ S S + ++H +I++ E+V GS LVDMYAKC
Sbjct: 442 KMRGSNLRADQSTFATVLKA-SASFASLLLGKQLHAFIIRSGNLENVFSGSGLVDMYAKC 500
Query: 298 GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357
G I DA +VF+ M +N +W ++I + NG+ A+ F M E +QP+ V+ LG L
Sbjct: 501 GSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGVL 560
Query: 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417
+AC H G V++G E F++M Y + PK +HYACM+DLLGR G +A K + EMP +P+
Sbjct: 561 TACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEKLMDEMPFEPD 620
Query: 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477
+W+++L++CR+H + +A AA ++F + AYV++SN AAAG+W+ V ++++
Sbjct: 621 EIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAAAGEWEKVRDVKK 680
Query: 478 KMKLRGVLKDTGCSWV 493
M+ RG+ K SWV
Sbjct: 681 AMRERGIKKVPAYSWV 696
Score = 138 bits (348), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 97/378 (25%), Positives = 184/378 (48%), Gaps = 14/378 (3%)
Query: 66 KIHAHITKTGVKPNTNISIKLLILHLKCGA--LKYAGQMFDELPQRTLSAYNYMIAGYLK 123
++HA K G N +++ ++L C L A +F+E+P++ +N +I GY K
Sbjct: 168 QVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEK 227
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
+G ES+ L K+ SG +P +TFS +LKA LG+ +HA +
Sbjct: 228 DGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVVGLHDFA-----LGQQLHALSVTTGFS 282
Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
D + ++D Y K + R++FD M E + + +IS + E + FR+
Sbjct: 283 RDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNVVISSYSQADQYEASLHFFREM 342
Query: 244 ----VEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGK 299
++ + M+ + ++ + + ++HCQ + + +G++LVDMYAKC
Sbjct: 343 QCMGFDRRNFPFATML-SIAANLSSLQMGRQLHCQALLATADSILHVGNSLVDMYAKCEM 401
Query: 300 IDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
++A +F + Q+ +WT++I GY + G L+LF M+ ++ + TF L A
Sbjct: 402 FEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLFTKMRGSNLRADQSTFATVLKA 461
Query: 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSD 419
+ G+++ + R +++ + +VD+ + GS++ A++ EMP++ N+
Sbjct: 462 SASFASLLLGKQLHAFIIRSGNLENVFSG-SGLVDMYAKCGSIKDAVQVFEEMPDR-NAV 519
Query: 420 VWAALLSSCRLHDDVEMA 437
W AL+S+ + D E A
Sbjct: 520 SWNALISAHADNGDGEAA 537
Score = 92.4 bits (228), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 80/362 (22%), Positives = 154/362 (42%), Gaps = 21/362 (5%)
Query: 73 KTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLS 132
K V NT IS H+K G + A +FD +P RT+ + ++ Y +N +E+
Sbjct: 77 KNTVSTNTMISG-----HVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFK 131
Query: 133 LVRKLV--SSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT 190
L R++ SS PD TF+ +L N +P+N VHA +K + L
Sbjct: 132 LFRQMCRSSSCTLPDHVTFTTLLPG-----CNDAVPQNAVGQVHAFAVKLGFDTNPFLTV 186
Query: 191 A--LVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI 248
+ L+ SY + + A ++F+ + EK+ + ++I+G+ G ++ +F K +
Sbjct: 187 SNVLLKSYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGH 246
Query: 249 VVYNAMIEGY---SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARR 305
+ G + + ++H + F D +G+ ++D Y+K ++ + R
Sbjct: 247 QPSDFTFSGVLKAVVGLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRM 306
Query: 306 VFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365
+FD M + + ++ +I Y + +L F MQ F LS +
Sbjct: 307 LFDEMPELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSS 366
Query: 366 VDKGREIFESMERDYSMKPKMEHYA-CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAAL 424
+ GR++ + + + H +VD+ + E+A +P++ W AL
Sbjct: 367 LQMGRQL--HCQALLATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVS-WTAL 423
Query: 425 LS 426
+S
Sbjct: 424 IS 425
Score = 72.8 bits (177), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 103/227 (45%), Gaps = 38/227 (16%)
Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
R V A+I+K D +V+ ++ G+ S AR V+D M KN + + +MISG +
Sbjct: 33 RRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKT 92
Query: 231 GFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS--IETARKALEVHCQ-----LIKNVFFED 283
G V A ++F ++ +V + ++ Y+ + + A K C+ L +V F
Sbjct: 93 GDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQMCRSSSCTLPDHVTFTT 152
Query: 284 ---------------------VKLG----------SALVDMYAKCGKIDDARRVFDHMQQ 312
VKLG + L+ Y + ++D A +F+ + +
Sbjct: 153 LLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTVSNVLLKSYCEVRRLDLACVLFEEIPE 212
Query: 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359
K+ T+ ++I GY K+G +++ LF M++ QP+ TF G L A
Sbjct: 213 KDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKA 259
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 54/111 (48%), Gaps = 4/111 (3%)
Query: 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330
V ++IK F D + +V+ + G++ AR+V+D M KN + +MI G+ K G+
Sbjct: 35 VDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPHKNTVSTNTMISGHVKTGD 94
Query: 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381
+ A +LF M + V + +G + H D+ ++F M R S
Sbjct: 95 VSSARDLFDAMPDRTV-VTWTILMGWYARNSH---FDEAFKLFRQMCRSSS 141
>sp|Q9M4P3|PP316_ARATH Pentatricopeptide repeat-containing protein At4g16835,
mitochondrial OS=Arabidopsis thaliana GN=DYW10 PE=2 SV=3
Length = 656
Score = 256 bits (653), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 145/431 (33%), Positives = 238/431 (55%), Gaps = 51/431 (11%)
Query: 99 AGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTC 158
A Q+FDE+P+ +YN M++ Y++N E++ S + M K +
Sbjct: 112 AHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDR--------------MPFKDAAS 157
Query: 159 CRSNVPLPRNLGRMVHA-QILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNV 217
+ + G M A ++ ++ ++V + A++ Y++ G A F + + V
Sbjct: 158 WNTMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGYIECGDLEKASHFFKVAPVRGV 217
Query: 218 ICSTSMISGFMSQGFVEDAEEIFRK-TVEKDIVVYNAMIEGY------SISIETARKALE 270
+ T+MI+G+M VE AE +F+ TV K++V +NAMI GY ++ R LE
Sbjct: 218 VAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRAMLE 277
Query: 271 ----------------------------VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302
+H + K+ DV ++L+ MY KCG++ D
Sbjct: 278 EGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKSTLCNDVTALTSLISMYCKCGELGD 337
Query: 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362
A ++F+ M++K+V W +MI GY ++GN ++AL LF M + ++P+++TF+ L AC H
Sbjct: 338 AWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLLACNH 397
Query: 363 AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422
AGLV+ G FESM RDY ++P+ +HY CMVDLLGRAG LE+ALK + MP +P++ V+
Sbjct: 398 AGLVNIGMAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEALKLIRSMPFRPHAAVFG 457
Query: 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482
LL +CR+H +VE+A AA ++ +LN+ + G YV L+N A+ +W+ V +R++MK
Sbjct: 458 TLLGACRVHKNVELAEFAAEKLLQLNSQNAAG-YVQLANIYASKNRWEDVARVRKRMKES 516
Query: 483 GVLKDTGCSWV 493
V+K G SW+
Sbjct: 517 NVVKVPGYSWI 527
Score = 103 bits (257), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 77/277 (27%), Positives = 130/277 (46%), Gaps = 9/277 (3%)
Query: 163 VPLPRNLGRMVHAQILKCDVKADDVL-YTALVDSYVKGGKTSYARIVFDMMLEKNVICST 221
+ + ++ RM+ A L ++ D Y ++ YV+ A+ FD M K+
Sbjct: 100 IGISKDPSRMMEAHQLFDEIPEPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAASWN 159
Query: 222 SMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFF 281
+MI+G+ +G +E A E+F +EK+ V +NAMI GY IE LE K
Sbjct: 160 TMITGYARRGEMEKARELFYSMMEKNEVSWNAMISGY---IECG--DLEKASHFFKVAPV 214
Query: 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGYGKNGNPNQALELFCM 340
V +A++ Y K K++ A +F M KN+ TW +MI GY +N P L+LF
Sbjct: 215 RGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAMISGYVENSRPEDGLKLFRA 274
Query: 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400
M E ++PN AL C + GR+I + + + ++ + ++ + + G
Sbjct: 275 MLEEGIRPNSSGLSSALLGCSELSALQLGRQIHQIVSKS-TLCNDVTALTSLISMYCKCG 333
Query: 401 SLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMA 437
L A K + E+ +K + W A++S H + + A
Sbjct: 334 ELGDAWK-LFEVMKKKDVVAWNAMISGYAQHGNADKA 369
Score = 67.0 bits (162), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 81/191 (42%), Gaps = 37/191 (19%)
Query: 90 HLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK-------------------------- 123
+++CG L+ A F P R + A+ MI GY+K
Sbjct: 196 YIECGDLEKASHFFKVAPVRGVVAWTAMITGYMKAKKVELAEAMFKDMTVNKNLVTWNAM 255
Query: 124 ------NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQI 177
N + E+ L L R ++ G RP+ S L C L LGR +H +
Sbjct: 256 ISGYVENSRPEDGLKLFRAMLEEGIRPNSSGLSSALLG---CSELSAL--QLGRQIHQIV 310
Query: 178 LKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237
K + D T+L+ Y K G+ A +F++M +K+V+ +MISG+ G + A
Sbjct: 311 SKSTLCNDVTALTSLISMYCKCGELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKAL 370
Query: 238 EIFRKTVEKDI 248
+FR+ ++ I
Sbjct: 371 CLFREMIDNKI 381
Score = 65.5 bits (158), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 17/173 (9%)
Query: 35 NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
N LS+ L S SALQ G +IH ++K+ + + L+ ++ KCG
Sbjct: 283 NSSGLSSALLGCSELSALQ---------LGRQIHQIVSKSTLCNDVTALTSLISMYCKCG 333
Query: 95 ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
L A ++F+ + ++ + A+N MI+GY ++G +++L L R+++ + RPD TF +L
Sbjct: 334 ELGDAWKLFEVMKKKDVVAWNAMISGYAQHGNADKALCLFREMIDNKIRPDWITFVAVLL 393
Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV--LYTALVDSYVKGGKTSYA 205
A C + + N+G M + + + D K + YT +VD + GK A
Sbjct: 394 A--CNHAGLV---NIG-MAYFESMVRDYKVEPQPDHYTCMVDLLGRAGKLEEA 440
Score = 46.2 bits (108), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/213 (26%), Positives = 89/213 (41%), Gaps = 22/213 (10%)
Query: 290 LVDMYAKC---GKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
L + A+C G ID A RVF M+ KN TW S++ G K +P++ +E + E
Sbjct: 64 LNKIIARCVRSGDIDGALRVFHGMRAKNTITWNSLLIGISK--DPSRMMEAHQLFDE-IP 120
Query: 347 QPNYVTFLGALSACGHAGLVDKGREIFESME-RDYSMKPKMEHYACMVDLLGRAGSLEQA 405
+P+ ++ LS +K + F+ M +D + + M+ R G +E+A
Sbjct: 121 EPDTFSYNIMLSCYVRNVNFEKAQSFFDRMPFKDAA------SWNTMITGYARRGEMEKA 174
Query: 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465
+ M EK N W A++S D+E A+ FK+ A+ A+
Sbjct: 175 RELFYSMMEK-NEVSWNAMISGYIECGDLE----KASHFFKVAPVRGVVAWTAMITGYMK 229
Query: 466 AGKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498
A K EL E M + +W SG
Sbjct: 230 AKK----VELAEAMFKDMTVNKNLVTWNAMISG 258
>sp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g15130
OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1
Length = 689
Score = 256 bits (653), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 150/474 (31%), Positives = 253/474 (53%), Gaps = 32/474 (6%)
Query: 35 NYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
N + S L A L +AL+ GL+IH K G + + L+ ++ KCG
Sbjct: 106 NEFTFSTNLKACGLLNALEK---------GLQIHGFCLKIGFEMMVEVGNSLVDMYSKCG 156
Query: 95 ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSG--ERPDGYTFSMI 152
+ A ++F + R+L ++N MIAG++ G ++L + + ERPD +T + +
Sbjct: 157 RINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSL 216
Query: 153 LKASTCCRSNVPLPRNLGRMVHAQILKCDVK--ADDVLYTALVDSYVKGGKTSYARIVFD 210
LKA C + + G+ +H +++ + + +LVD YVK G AR FD
Sbjct: 217 LKA--CSSTGMIYA---GKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFD 271
Query: 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS--------I 262
+ EK +I +S+I G+ +G +A +F++ E N+ I+ +++S
Sbjct: 272 QIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQE-----LNSQIDSFALSSIIGVFADF 326
Query: 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMI 322
R+ ++ +K + + +++VDMY KCG +D+A + F MQ K+V +WT +I
Sbjct: 327 ALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVI 386
Query: 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382
GYGK+G +++ +F M ++P+ V +L LSAC H+G++ +G E+F + + +
Sbjct: 387 TGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGI 446
Query: 383 KPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAAN 442
KP++EHYAC+VDLLGRAG L++A + MP KPN +W LLS CR+H D+E+
Sbjct: 447 KPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGK 506
Query: 443 EIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496
+ +++A + P YV +SN AG W+ RE ++G+ K+ G SWV E
Sbjct: 507 ILLRIDAKN-PANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEIE 559
Score = 126 bits (316), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 105/426 (24%), Positives = 206/426 (48%), Gaps = 20/426 (4%)
Query: 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLK 123
G ++H ++ K+G N S L+ ++ KC A ++FD +P+R + +++ +++G++
Sbjct: 25 GGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVL 84
Query: 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK 183
NG ++ SLSL ++ G P+ +TFS LKA C L + L +H LK +
Sbjct: 85 NGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKA---CGLLNALEKGL--QIHGFCLKIGFE 139
Query: 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKT 243
+ +LVD Y K G+ + A VF ++++++I +MI+GF+ G+ A + F
Sbjct: 140 MMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMM 199
Query: 244 VEKDI------VVYNAMIEGYSISIETARKALEVHCQLIKNVFF--EDVKLGSALVDMYA 295
E +I ++++ S S ++H L+++ F + +LVD+Y
Sbjct: 200 QEANIKERPDEFTLTSLLKACS-STGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYV 258
Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
KCG + AR+ FD +++K + +W+S+I GY + G +A+ LF +QE Q +
Sbjct: 259 KCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSS 318
Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
+ L+ +G+++ +++ + +VD+ + G +++A K EM K
Sbjct: 319 IIGVFADFALLRQGKQM-QALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLK 377
Query: 416 PNSDV--WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473
DV W +++ H + + E+ + N Y+A+ + + +G
Sbjct: 378 ---DVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGE 434
Query: 474 ELREKM 479
EL K+
Sbjct: 435 ELFSKL 440
>sp|Q9SVA5|PP357_ARATH Pentatricopeptide repeat-containing protein At4g39530
OS=Arabidopsis thaliana GN=PCMP-E52 PE=1 SV=1
Length = 834
Score = 255 bits (652), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 150/439 (34%), Positives = 244/439 (55%), Gaps = 15/439 (3%)
Query: 63 YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYL 122
+G ++HA+ K + ++ ++ L+ ++ KC L A ++FD + +N MI GY
Sbjct: 368 FGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYS 427
Query: 123 KNG---QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179
+ G ++ E+L++ R + RP TF +L+AS S L + +H + K
Sbjct: 428 RLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTS-----LGLSKQIHGLMFK 482
Query: 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEI 239
+ D +AL+D Y +R+VFD M K+++ SM +G++ Q E+A +
Sbjct: 483 YGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNL 542
Query: 240 FRK---TVEK-DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295
F + + E+ D + M+ ++ + + E HCQL+K + + +AL+DMYA
Sbjct: 543 FLELQLSRERPDEFTFANMVTAAG-NLASVQLGQEFHCQLLKRGLECNPYITNALLDMYA 601
Query: 296 KCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355
KCG +DA + FD ++V W S+I Y +G +AL++ M ++PNY+TF+G
Sbjct: 602 KCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVG 661
Query: 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK 415
LSAC HAGLV+ G + FE M R + ++P+ EHY CMV LLGRAG L +A + + +MP K
Sbjct: 662 VLSACSHAGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLNKARELIEKMPTK 720
Query: 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475
P + VW +LLS C +VE+A AA E+ L+ G++ LSN A+ G W ++
Sbjct: 721 PAAIVWRSLLSGCAKAGNVELAEHAA-EMAILSDPKDSGSFTMLSNIYASKGMWTEAKKV 779
Query: 476 REKMKLRGVLKDTGCSWVG 494
RE+MK+ GV+K+ G SW+G
Sbjct: 780 RERMKVEGVVKEPGRSWIG 798
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 124/493 (25%), Positives = 206/493 (41%), Gaps = 112/493 (22%)
Query: 61 PFY--GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMI 118
PF G +IHAHI + G++ + ++ L+ ++KCG + A ++F+ +P + + ++ ++
Sbjct: 263 PFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLL 322
Query: 119 AGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQIL 178
+GY +N +E++ L + G +PD Y S IL T C S L G VHA +
Sbjct: 323 SGYKQNALHKEAMELFTSMSKFGLKPDMYACSSIL---TSCASLHAL--GFGTQVHAYTI 377
Query: 179 KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEE 238
K ++ D + +L+D Y K + AR VFD+
Sbjct: 378 KANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIF-------------------------- 411
Query: 239 IFRKTVEKDIVVYNAMIEGYS------------------------------ISIETARKA 268
D+V++NAMIEGYS +S+ A +
Sbjct: 412 -----AAADVVLFNAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASAS 466
Query: 269 L-------EVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSM 321
L ++H + K D+ GSAL+D+Y+ C + D+R VFD M+ K++ W SM
Sbjct: 467 LTSLGLSKQIHGLMFKYGLNLDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSM 526
Query: 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF-ESMERDY 380
GY + +AL LF +Q +P+ TF ++A G+ V G+E + ++R
Sbjct: 527 FAGYVQQSENEEALNLFLELQLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGL 586
Query: 381 SMKPKMEHYACMVDLLGRAGSLEQALKF---------------------------VLEMP 413
P + + ++D+ + GS E A K L+M
Sbjct: 587 ECNPYITN--ALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQML 644
Query: 414 EK-------PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466
EK PN + +LS+C VE + + YV + + L A
Sbjct: 645 EKMMSEGIEPNYITFVGVLSACSHAGLVEDGLKQFELMLRFGIEPETEHYVCMVSLLGRA 704
Query: 467 GKWDSVTELREKM 479
G+ + EL EKM
Sbjct: 705 GRLNKARELIEKM 717
Score = 135 bits (341), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 85/326 (26%), Positives = 169/326 (51%), Gaps = 9/326 (2%)
Query: 52 LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL 111
LQ + D Y +H I G++ +T +S L+ L+ + G + YA ++F+++P+R L
Sbjct: 51 LQLRASDDLLHYQNVVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNL 110
Query: 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSS-GERPDGYTFSMILKASTCCRSNVPLPRNLG 170
+++ M++ +G EESL + + + + P+ Y S ++A C R +
Sbjct: 111 VSWSTMVSACNHHGIYEESLVVFLEFWRTRKDSPNEYILSSFIQA---CSGLDGRGRWMV 167
Query: 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQ 230
+ + ++K D + T L+D Y+K G YAR+VFD + EK+ + T+MISG +
Sbjct: 168 FQLQSFLVKSGFDRDVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKM 227
Query: 231 GFVEDAEEIFRKTVEKDIV----VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKL 286
G + ++F + +E ++V + + ++ SI + ++H +++ D L
Sbjct: 228 GRSYVSLQLFYQLMEDNVVPDGYILSTVLSACSI-LPFLEGGKQIHAHILRYGLEMDASL 286
Query: 287 GSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346
+ L+D Y KCG++ A ++F+ M KN+ +WT+++ GY +N +A+ELF M + +
Sbjct: 287 MNVLIDSYVKCGRVIAAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGL 346
Query: 347 QPNYVTFLGALSACGHAGLVDKGREI 372
+P+ L++C + G ++
Sbjct: 347 KPDMYACSSILTSCASLHALGFGTQV 372
Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/261 (29%), Positives = 126/261 (48%), Gaps = 8/261 (3%)
Query: 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQG 231
+VH QI+ ++ D L L++ Y + G YAR VF+ M E+N++ ++M+S G
Sbjct: 65 VVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHG 124
Query: 232 FVEDAEEIF------RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285
E++ +F RK + ++ + + + ++ L+K+ F DV
Sbjct: 125 IYEESLVVFLEFWRTRKDSPNEYILSSFIQACSGLDGRGRWMVFQLQSFLVKSGFDRDVY 184
Query: 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECC 345
+G+ L+D Y K G ID AR VFD + +K+ TWT+MI G K G +L+LF + E
Sbjct: 185 VGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDN 244
Query: 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405
V P+ LSAC ++ G++I + R Y ++ ++D + G + A
Sbjct: 245 VVPDGYILSTVLSACSILPFLEGGKQIHAHILR-YGLEMDASLMNVLIDSYVKCGRVIAA 303
Query: 406 LKFVLEMPEKPNSDVWAALLS 426
K MP K N W LLS
Sbjct: 304 HKLFNGMPNK-NIISWTTLLS 323
>sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230,
mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3
SV=1
Length = 822
Score = 255 bits (651), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 146/450 (32%), Positives = 246/450 (54%), Gaps = 9/450 (2%)
Query: 47 SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDEL 106
+ +AL+ I + +H I KT + + + LL L+ + G + A ++F+E+
Sbjct: 249 TFDTALKASIGLGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEM 308
Query: 107 PQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLP 166
P+ + +++MIA + +NG E++ L ++ + P+ +T S IL + +
Sbjct: 309 PKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCS---- 364
Query: 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISG 226
LG +H ++K D + AL+D Y K K A +F + KN + ++I G
Sbjct: 365 -GLGEQLHGLVVKVGFDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVG 423
Query: 227 FMSQGFVEDAEEIFRKTVEKDIVVYNAMIE---GYSISIETARKALEVHCQLIKNVFFED 283
+ + G A +FR+ + + V G S+ + ++VH IK +
Sbjct: 424 YENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKK 483
Query: 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343
V + ++L+DMYAKCG I A+ VF+ M+ +V +W ++I GY +G QAL + +M++
Sbjct: 484 VAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKD 543
Query: 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE 403
+PN +TFLG LS C +AGL+D+G+E FESM RD+ ++P +EHY CMV LLGR+G L+
Sbjct: 544 RDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLD 603
Query: 404 QALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL 463
+A+K + +P +P+ +W A+LS+ ++ E A +A EI K+N D YV +SN
Sbjct: 604 KAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDE-ATYVLVSNMY 662
Query: 464 AAAGKWDSVTELREKMKLRGVLKDTGCSWV 493
A A +W +V +R+ MK GV K+ G SW+
Sbjct: 663 AGAKQWANVASIRKSMKEMGVKKEPGLSWI 692
Score = 119 bits (299), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 94/402 (23%), Positives = 180/402 (44%), Gaps = 14/402 (3%)
Query: 27 QTFPPKLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKL 86
+T L++ DS+ L + + + L+ I + P IH I K G + + L
Sbjct: 31 KTAALDLESSDSIIPGLDSHAYGAMLRRCIQKNDPISAKAIHCDILKKGSCLDLFATNIL 90
Query: 87 LILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDG 146
L ++K G K A +FDE+P+R ++ + GY ++ + L +L G +
Sbjct: 91 LNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGY----ACQDPIGLYSRLHREGHELNP 146
Query: 147 YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR 206
+ F+ LK P +H+ I+K ++ + AL+++Y G AR
Sbjct: 147 HVFTSFLKLFVSLDKAEICP-----WLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSAR 201
Query: 207 IVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY---SISIE 263
VF+ +L K+++ ++S ++ G+ ED+ ++ + N + SI +
Sbjct: 202 TVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLG 261
Query: 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMID 323
A VH Q++K + D ++G L+ +Y + G + DA +VF+ M + +V W+ MI
Sbjct: 262 AFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIA 321
Query: 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK 383
+ +NG N+A++LF M+E V PN T L+ C G ++ +
Sbjct: 322 RFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGCAIGKCSGLGEQL-HGLVVKVGFD 380
Query: 384 PKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALL 425
+ ++D+ + ++ A+K E+ K N W ++
Sbjct: 381 LDIYVSNALIDVYAKCEKMDTAVKLFAELSSK-NEVSWNTVI 421
Score = 57.4 bits (137), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 104/213 (48%), Gaps = 11/213 (5%)
Query: 37 DSLSNPLTAT--SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG 94
++L N ++ T + SAL + + G+++H KT +S L+ ++ KCG
Sbjct: 439 EALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCG 498
Query: 95 ALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154
+K+A +F+E+ ++++N +I+GY +G ++L ++ + +P+G TF +L
Sbjct: 499 DIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVL- 557
Query: 155 ASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYA-RIVFDMML 213
S C SN L + I ++ YT +V + G+ A +++ +
Sbjct: 558 -SGC--SNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPY 614
Query: 214 EKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246
E +V+ +M+S M+Q + EE R++ E+
Sbjct: 615 EPSVMIWRAMLSASMNQ----NNEEFARRSAEE 643
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 183,352,466
Number of Sequences: 539616
Number of extensions: 7585323
Number of successful extensions: 24956
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 17202
Number of HSP's gapped (non-prelim): 2075
length of query: 499
length of database: 191,569,459
effective HSP length: 122
effective length of query: 377
effective length of database: 125,736,307
effective search space: 47402587739
effective search space used: 47402587739
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)