Query 010837
Match_columns 499
No_of_seqs 565 out of 2803
Neff 11.4
Searched_HMMs 46136
Date Fri Mar 29 05:07:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010837.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010837hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 1.7E-71 3.6E-76 561.4 50.5 451 41-498 119-573 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 2.2E-69 4.7E-74 558.8 49.2 457 34-498 277-736 (857)
3 PLN03077 Protein ECB2; Provisi 100.0 3.7E-66 8.1E-71 534.7 46.9 438 43-490 150-627 (857)
4 PLN03218 maturation of RBCL 1; 100.0 3.1E-63 6.7E-68 503.7 51.9 445 39-490 364-849 (1060)
5 PLN03218 maturation of RBCL 1; 100.0 1.4E-62 3E-67 499.0 48.0 438 43-489 435-916 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 1.8E-57 4E-62 459.3 41.7 432 42-493 84-532 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.2E-27 2.5E-32 253.5 47.0 421 45-480 465-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 1.7E-26 3.7E-31 244.6 47.4 423 47-485 433-869 (899)
9 PRK11447 cellulose synthase su 99.9 4E-20 8.7E-25 197.0 45.2 417 52-487 276-746 (1157)
10 KOG4626 O-linked N-acetylgluco 99.9 8.2E-21 1.8E-25 173.0 28.2 417 47-481 50-484 (966)
11 KOG4626 O-linked N-acetylgluco 99.9 1.5E-20 3.2E-25 171.3 28.6 415 41-471 78-508 (966)
12 PRK11447 cellulose synthase su 99.9 8E-19 1.7E-23 187.1 46.6 92 48-140 115-210 (1157)
13 TIGR00990 3a0801s09 mitochondr 99.9 1.9E-18 4.1E-23 173.1 40.5 414 48-482 130-571 (615)
14 PRK11788 tetratricopeptide rep 99.9 7.5E-20 1.6E-24 174.1 28.9 289 193-489 42-354 (389)
15 PRK11788 tetratricopeptide rep 99.9 1.3E-19 2.8E-24 172.5 30.3 296 118-454 42-354 (389)
16 PRK10049 pgaA outer membrane p 99.9 8.4E-18 1.8E-22 171.4 43.0 407 41-481 11-455 (765)
17 PRK15174 Vi polysaccharide exp 99.9 8.1E-18 1.7E-22 168.0 38.8 354 92-457 17-391 (656)
18 PRK09782 bacteriophage N4 rece 99.9 5E-17 1.1E-21 166.0 45.1 189 290-483 515-707 (987)
19 PRK14574 hmsH outer membrane p 99.8 6.2E-16 1.3E-20 155.0 45.0 421 48-481 38-512 (822)
20 PRK15174 Vi polysaccharide exp 99.8 3.8E-17 8.2E-22 163.2 35.2 348 122-483 16-382 (656)
21 PRK09782 bacteriophage N4 rece 99.8 3.7E-16 8E-21 159.8 42.7 430 44-485 180-743 (987)
22 TIGR00990 3a0801s09 mitochondr 99.8 4.1E-16 8.9E-21 156.3 37.7 392 85-492 132-545 (615)
23 PRK10049 pgaA outer membrane p 99.8 2.4E-15 5.1E-20 153.6 39.4 368 41-451 45-460 (765)
24 KOG4422 Uncharacterized conser 99.8 1.1E-14 2.5E-19 127.7 37.6 301 39-351 110-469 (625)
25 PRK14574 hmsH outer membrane p 99.7 7.9E-14 1.7E-18 140.0 40.4 391 48-451 71-517 (822)
26 KOG2002 TPR-containing nuclear 99.7 6.9E-15 1.5E-19 141.6 30.3 437 42-485 267-801 (1018)
27 KOG2002 TPR-containing nuclear 99.7 2.4E-14 5.3E-19 138.0 31.9 427 42-481 230-744 (1018)
28 KOG2003 TPR repeat-containing 99.7 9.3E-15 2E-19 129.2 23.7 406 50-468 206-709 (840)
29 KOG4422 Uncharacterized conser 99.7 2E-13 4.4E-18 120.0 31.1 377 42-439 204-617 (625)
30 KOG0495 HAT repeat protein [RN 99.6 3.4E-11 7.3E-16 111.8 40.1 429 51-498 412-894 (913)
31 KOG1126 DNA-binding cell divis 99.6 4.1E-14 8.9E-19 131.4 21.4 274 200-484 333-622 (638)
32 PF13429 TPR_15: Tetratricopep 99.6 7.3E-16 1.6E-20 138.9 8.6 250 225-480 16-275 (280)
33 KOG1155 Anaphase-promoting com 99.6 4.5E-12 9.7E-17 112.9 29.8 248 226-481 236-494 (559)
34 KOG1155 Anaphase-promoting com 99.6 1.6E-11 3.5E-16 109.4 29.0 280 193-481 234-535 (559)
35 KOG0495 HAT repeat protein [RN 99.6 3.9E-10 8.5E-15 104.9 38.7 418 57-492 388-854 (913)
36 KOG1915 Cell cycle control pro 99.6 9.5E-11 2.1E-15 104.8 32.9 420 57-495 85-546 (677)
37 PRK10747 putative protoheme IX 99.6 8.1E-12 1.8E-16 117.9 28.1 274 199-481 97-389 (398)
38 KOG1126 DNA-binding cell divis 99.5 1.1E-12 2.5E-17 122.0 20.9 278 167-451 335-624 (638)
39 PRK10747 putative protoheme IX 99.5 6.4E-11 1.4E-15 111.8 32.2 277 124-447 97-390 (398)
40 TIGR00540 hemY_coli hemY prote 99.5 7.9E-11 1.7E-15 111.9 33.0 144 301-446 246-398 (409)
41 KOG2076 RNA polymerase III tra 99.5 2.5E-11 5.5E-16 116.8 29.2 312 165-480 153-510 (895)
42 KOG1173 Anaphase-promoting com 99.5 3.8E-11 8.3E-16 109.7 28.8 433 41-488 12-522 (611)
43 KOG0547 Translocase of outer m 99.5 1.7E-10 3.6E-15 103.7 30.6 397 50-480 120-564 (606)
44 PF13429 TPR_15: Tetratricopep 99.5 1.5E-13 3.2E-18 124.0 11.3 248 191-446 13-276 (280)
45 COG2956 Predicted N-acetylgluc 99.5 2.9E-11 6.3E-16 102.9 23.6 229 191-450 112-350 (389)
46 KOG2003 TPR repeat-containing 99.5 6.2E-11 1.4E-15 105.4 25.7 374 54-433 246-709 (840)
47 KOG2076 RNA polymerase III tra 99.5 3.8E-10 8.3E-15 108.8 32.7 334 53-413 147-510 (895)
48 KOG1915 Cell cycle control pro 99.5 1.6E-09 3.4E-14 97.2 34.0 402 77-491 70-509 (677)
49 TIGR00540 hemY_coli hemY prote 99.5 3.6E-11 7.7E-16 114.2 24.2 280 196-480 94-397 (409)
50 COG3071 HemY Uncharacterized e 99.4 2.1E-09 4.6E-14 94.6 31.2 291 124-451 97-394 (400)
51 TIGR02521 type_IV_pilW type IV 99.4 7.1E-11 1.5E-15 103.7 22.1 197 284-482 31-232 (234)
52 KOG1840 Kinesin light chain [C 99.4 3.7E-10 8E-15 106.3 24.8 246 185-480 198-477 (508)
53 COG2956 Predicted N-acetylgluc 99.4 2.9E-10 6.2E-15 97.0 21.4 249 228-481 46-310 (389)
54 KOG4318 Bicoid mRNA stability 99.3 1E-09 2.2E-14 105.6 26.1 433 32-486 12-598 (1088)
55 PF13041 PPR_2: PPR repeat fam 99.3 2.8E-12 6E-17 81.2 6.0 48 109-156 1-48 (50)
56 KOG2047 mRNA splicing factor [ 99.3 1.2E-07 2.6E-12 88.7 37.4 282 188-474 389-715 (835)
57 PF13041 PPR_2: PPR repeat fam 99.3 5.8E-12 1.2E-16 79.7 6.8 50 313-362 1-50 (50)
58 COG3071 HemY Uncharacterized e 99.3 4.3E-09 9.3E-14 92.7 26.5 279 199-487 97-395 (400)
59 KOG0547 Translocase of outer m 99.3 4.5E-09 9.8E-14 94.8 25.0 153 325-482 336-491 (606)
60 KOG1174 Anaphase-promoting com 99.3 1E-07 2.3E-12 84.4 32.3 264 182-451 228-504 (564)
61 COG3063 PilF Tfp pilus assembl 99.3 3.8E-10 8.2E-15 91.9 16.0 187 289-477 40-231 (250)
62 PRK12370 invasion protein regu 99.3 1.6E-09 3.5E-14 107.0 24.1 259 216-483 255-536 (553)
63 KOG4318 Bicoid mRNA stability 99.3 1.8E-09 3.8E-14 104.0 22.1 97 301-401 189-286 (1088)
64 KOG4162 Predicted calmodulin-b 99.3 5.9E-08 1.3E-12 92.6 31.7 451 20-483 256-784 (799)
65 PRK12370 invasion protein regu 99.2 3.1E-09 6.6E-14 105.0 24.7 213 261-481 273-501 (553)
66 KOG2047 mRNA splicing factor [ 99.2 6.1E-07 1.3E-11 84.1 36.0 415 52-479 109-612 (835)
67 KOG2376 Signal recognition par 99.2 4.9E-07 1.1E-11 83.9 34.9 405 52-478 19-516 (652)
68 PRK11189 lipoprotein NlpI; Pro 99.2 1.3E-09 2.9E-14 98.5 18.4 89 287-377 67-159 (296)
69 KOG3785 Uncharacterized conser 99.2 1.4E-08 3E-13 88.0 22.8 415 52-487 29-495 (557)
70 PF12569 NARP1: NMDA receptor- 99.2 4.1E-07 9E-12 87.2 35.3 414 50-478 9-516 (517)
71 KOG1174 Anaphase-promoting com 99.2 8.7E-07 1.9E-11 78.7 34.0 292 182-483 190-501 (564)
72 KOG1156 N-terminal acetyltrans 99.2 1.7E-07 3.8E-12 87.7 31.3 437 44-497 7-488 (700)
73 TIGR02521 type_IV_pilW type IV 99.2 8.4E-09 1.8E-13 90.5 22.0 195 217-447 31-232 (234)
74 KOG1129 TPR repeat-containing 99.2 1.7E-09 3.8E-14 92.4 15.2 225 251-481 225-457 (478)
75 KOG1156 N-terminal acetyltrans 99.2 1E-06 2.2E-11 82.7 34.3 424 44-479 40-508 (700)
76 KOG1129 TPR repeat-containing 99.1 2.6E-09 5.6E-14 91.4 15.7 227 221-451 227-462 (478)
77 KOG1840 Kinesin light chain [C 99.1 1.4E-08 3E-13 95.9 21.4 245 147-446 200-478 (508)
78 PF12569 NARP1: NMDA receptor- 99.1 1.3E-07 2.8E-12 90.5 26.8 282 194-480 12-332 (517)
79 KOG1173 Anaphase-promoting com 99.1 1.3E-07 2.9E-12 87.1 25.5 268 181-451 239-522 (611)
80 COG3063 PilF Tfp pilus assembl 99.1 5.7E-08 1.2E-12 79.4 19.0 173 317-495 37-214 (250)
81 KOG3785 Uncharacterized conser 99.0 6.9E-07 1.5E-11 77.7 25.0 121 52-179 64-213 (557)
82 KOG2376 Signal recognition par 99.0 2.9E-06 6.2E-11 79.0 30.1 146 195-345 88-254 (652)
83 PRK11189 lipoprotein NlpI; Pro 99.0 2.3E-07 4.9E-12 84.0 23.0 196 263-466 78-284 (296)
84 PF04733 Coatomer_E: Coatomer 99.0 5E-08 1.1E-12 86.9 18.2 248 195-451 10-269 (290)
85 KOG4162 Predicted calmodulin-b 99.0 5E-06 1.1E-10 79.9 30.7 404 42-451 320-787 (799)
86 cd05804 StaR_like StaR_like; a 98.9 4.3E-06 9.2E-11 78.6 29.8 294 188-483 8-337 (355)
87 KOG3616 Selective LIM binding 98.9 2.1E-06 4.5E-11 81.8 26.5 188 263-478 746-933 (1636)
88 KOG4340 Uncharacterized conser 98.8 4.6E-06 9.9E-11 71.1 23.6 386 46-482 11-443 (459)
89 KOG4340 Uncharacterized conser 98.8 6.3E-07 1.4E-11 76.1 17.8 282 189-478 13-335 (459)
90 PRK04841 transcriptional regul 98.8 2E-05 4.3E-10 84.0 33.7 294 190-483 413-761 (903)
91 KOG1125 TPR repeat-containing 98.8 4.2E-07 9.1E-12 84.2 17.9 214 263-480 299-525 (579)
92 KOG0548 Molecular co-chaperone 98.8 1.4E-05 3.1E-10 73.7 26.8 396 53-464 10-471 (539)
93 PF04733 Coatomer_E: Coatomer 98.8 9.8E-07 2.1E-11 78.7 19.3 117 192-311 108-228 (290)
94 KOG1070 rRNA processing protei 98.8 7.4E-07 1.6E-11 90.5 19.8 200 283-487 1457-1668(1710)
95 PF12854 PPR_1: PPR repeat 98.7 1.8E-08 3.8E-13 57.1 4.2 34 180-213 1-34 (34)
96 KOG3617 WD40 and TPR repeat-co 98.7 5.7E-05 1.2E-09 73.3 29.3 353 79-477 725-1169(1416)
97 KOG3617 WD40 and TPR repeat-co 98.7 3E-05 6.4E-10 75.2 27.4 340 103-477 718-1104(1416)
98 PRK04841 transcriptional regul 98.7 5.4E-05 1.2E-09 80.7 33.3 258 192-451 458-764 (903)
99 KOG0624 dsRNA-activated protei 98.7 2E-05 4.2E-10 68.7 23.5 54 427-481 316-369 (504)
100 TIGR03302 OM_YfiO outer membra 98.7 1.4E-06 2.9E-11 76.6 17.3 181 284-482 33-232 (235)
101 KOG0985 Vesicle coat protein c 98.7 5E-05 1.1E-09 75.3 28.2 287 52-372 845-1188(1666)
102 cd05804 StaR_like StaR_like; a 98.7 4.1E-05 8.9E-10 71.9 27.8 264 217-483 6-294 (355)
103 KOG3616 Selective LIM binding 98.7 9.4E-05 2E-09 71.0 28.7 185 162-372 743-930 (1636)
104 KOG3081 Vesicle coat complex C 98.7 2.3E-05 5.1E-10 65.9 22.0 250 195-451 17-275 (299)
105 KOG1914 mRNA cleavage and poly 98.7 0.00037 7.9E-09 64.8 32.8 149 331-481 347-500 (656)
106 PRK10370 formate-dependent nit 98.6 2.9E-06 6.3E-11 71.4 16.3 120 328-451 52-177 (198)
107 PF12854 PPR_1: PPR repeat 98.6 7.7E-08 1.7E-12 54.4 4.4 32 381-412 2-33 (34)
108 KOG0548 Molecular co-chaperone 98.6 6.8E-05 1.5E-09 69.4 25.4 369 88-483 10-456 (539)
109 KOG1127 TPR repeat-containing 98.6 4.6E-05 1E-09 75.5 24.9 414 52-479 466-993 (1238)
110 KOG1128 Uncharacterized conser 98.6 2.8E-06 6.2E-11 81.0 16.2 201 263-483 412-617 (777)
111 PRK15179 Vi polysaccharide bio 98.6 1E-05 2.2E-10 80.8 20.9 165 314-490 85-253 (694)
112 PRK15359 type III secretion sy 98.6 1.9E-06 4.2E-11 68.5 12.9 99 356-458 30-131 (144)
113 KOG1125 TPR repeat-containing 98.6 3.8E-06 8.3E-11 78.1 16.2 248 224-476 292-565 (579)
114 PRK15359 type III secretion sy 98.6 1.4E-06 3E-11 69.3 11.6 108 370-483 13-122 (144)
115 TIGR03302 OM_YfiO outer membra 98.5 4.4E-06 9.5E-11 73.3 16.0 181 247-449 32-234 (235)
116 KOG0624 dsRNA-activated protei 98.5 0.00017 3.8E-09 63.0 24.2 66 79-146 37-105 (504)
117 COG5010 TadD Flp pilus assembl 98.5 2E-05 4.3E-10 66.3 18.0 147 290-440 72-224 (257)
118 PRK10370 formate-dependent nit 98.5 1.1E-05 2.4E-10 67.9 16.9 149 323-487 24-178 (198)
119 KOG0985 Vesicle coat protein c 98.4 0.0026 5.6E-08 63.8 33.7 384 42-473 949-1374(1666)
120 KOG1914 mRNA cleavage and poly 98.4 0.0018 3.9E-08 60.4 30.6 435 40-479 15-536 (656)
121 KOG1128 Uncharacterized conser 98.4 1.8E-05 4E-10 75.7 16.8 190 280-485 394-585 (777)
122 KOG1070 rRNA processing protei 98.4 0.00013 2.9E-09 74.9 23.6 207 263-473 1472-1691(1710)
123 TIGR02552 LcrH_SycD type III s 98.4 6.6E-06 1.4E-10 65.1 11.4 96 353-450 20-117 (135)
124 COG4783 Putative Zn-dependent 98.3 0.00011 2.4E-09 67.4 19.6 112 362-477 318-432 (484)
125 PLN02789 farnesyltranstransfer 98.3 8.9E-05 1.9E-09 67.2 19.3 125 219-344 39-171 (320)
126 KOG2053 Mitochondrial inherita 98.3 0.0041 8.8E-08 61.7 34.2 217 26-244 22-253 (932)
127 COG5010 TadD Flp pilus assembl 98.3 4.4E-05 9.5E-10 64.3 15.8 122 287-411 103-227 (257)
128 PRK14720 transcript cleavage f 98.3 7.3E-05 1.6E-09 75.7 20.3 232 185-464 30-268 (906)
129 PRK15179 Vi polysaccharide bio 98.3 0.00017 3.7E-09 72.3 22.7 142 280-425 82-229 (694)
130 PLN02789 farnesyltranstransfer 98.3 7.2E-05 1.6E-09 67.8 18.2 200 260-465 48-267 (320)
131 COG4783 Putative Zn-dependent 98.3 0.00015 3.3E-09 66.5 19.7 136 294-448 316-455 (484)
132 KOG1127 TPR repeat-containing 98.3 0.00022 4.9E-09 70.9 22.0 178 95-278 473-659 (1238)
133 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 1.5E-05 3.2E-10 73.7 13.4 123 352-480 171-295 (395)
134 PF13812 PPR_3: Pentatricopept 98.3 1.4E-06 2.9E-11 49.8 4.2 34 111-144 1-34 (34)
135 TIGR00756 PPR pentatricopeptid 98.3 1.3E-06 2.7E-11 50.4 4.1 34 113-146 2-35 (35)
136 PF09976 TPR_21: Tetratricopep 98.3 3.3E-05 7.3E-10 61.7 13.4 114 363-478 24-143 (145)
137 PF09295 ChAPs: ChAPs (Chs5p-A 98.2 3.7E-05 8.1E-10 71.1 14.8 125 286-414 171-296 (395)
138 TIGR00756 PPR pentatricopeptid 98.2 4.1E-06 9E-11 48.1 4.3 33 317-349 2-34 (35)
139 TIGR02552 LcrH_SycD type III s 98.2 7.1E-05 1.5E-09 59.1 12.9 101 382-483 12-115 (135)
140 PF09976 TPR_21: Tetratricopep 98.1 0.0002 4.3E-09 57.2 15.1 125 317-444 14-144 (145)
141 KOG3081 Vesicle coat complex C 98.1 0.00068 1.5E-08 57.4 18.0 151 320-481 113-270 (299)
142 PF13812 PPR_3: Pentatricopept 98.1 5.7E-06 1.2E-10 47.2 4.3 33 316-348 2-34 (34)
143 PRK15363 pathogenicity island 98.1 6.8E-05 1.5E-09 58.8 11.4 96 386-482 35-132 (157)
144 PRK14720 transcript cleavage f 98.1 0.00066 1.4E-08 69.1 20.1 237 42-326 28-268 (906)
145 cd00189 TPR Tetratricopeptide 98.0 7E-05 1.5E-09 54.7 9.8 93 389-482 3-97 (100)
146 KOG3060 Uncharacterized conser 98.0 0.0019 4E-08 54.4 18.3 186 263-451 26-224 (289)
147 KOG3060 Uncharacterized conser 98.0 0.0013 2.8E-08 55.3 17.2 182 298-484 26-222 (289)
148 PF12895 Apc3: Anaphase-promot 97.9 7.7E-06 1.7E-10 58.3 3.3 52 424-477 31-82 (84)
149 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00021 4.6E-09 54.9 11.6 58 424-481 45-104 (119)
150 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.0002 4.3E-09 55.0 11.4 101 351-451 3-109 (119)
151 PF01535 PPR: PPR repeat; Int 97.9 1.4E-05 3.1E-10 44.3 3.1 31 112-142 1-31 (31)
152 PLN03088 SGT1, suppressor of 97.8 9.8E-05 2.1E-09 68.6 9.6 102 357-462 9-113 (356)
153 PF08579 RPM2: Mitochondrial r 97.8 0.00021 4.6E-09 51.9 8.3 85 114-198 28-116 (120)
154 KOG0553 TPR repeat-containing 97.8 0.00017 3.7E-09 62.1 8.9 97 323-423 89-187 (304)
155 PF01535 PPR: PPR repeat; Int 97.8 3.5E-05 7.5E-10 42.7 3.3 29 317-345 2-30 (31)
156 PF04840 Vps16_C: Vps16, C-ter 97.8 0.03 6.4E-07 50.9 30.2 123 286-428 179-301 (319)
157 PF12895 Apc3: Anaphase-promot 97.8 0.00013 2.8E-09 51.9 7.0 78 329-410 3-82 (84)
158 cd00189 TPR Tetratricopeptide 97.7 0.00038 8.1E-09 50.7 9.0 89 320-411 5-93 (100)
159 PF13414 TPR_11: TPR repeat; P 97.7 0.00015 3.3E-09 49.3 6.2 65 417-482 2-67 (69)
160 COG4235 Cytochrome c biogenesi 97.7 0.00067 1.5E-08 58.9 11.2 108 385-493 155-267 (287)
161 PRK15363 pathogenicity island 97.7 0.0017 3.7E-08 51.1 12.3 105 206-311 23-130 (157)
162 PF13432 TPR_16: Tetratricopep 97.6 0.00015 3.3E-09 48.6 5.5 57 424-481 3-59 (65)
163 PLN03088 SGT1, suppressor of 97.6 0.00083 1.8E-08 62.5 12.2 101 321-425 8-110 (356)
164 PF04840 Vps16_C: Vps16, C-ter 97.6 0.048 1E-06 49.6 23.3 107 352-476 179-285 (319)
165 KOG0550 Molecular chaperone (D 97.6 0.00079 1.7E-08 60.6 11.1 90 397-487 260-355 (486)
166 PRK02603 photosystem I assembl 97.6 0.0011 2.3E-08 54.9 11.2 93 388-481 37-148 (172)
167 KOG0553 TPR repeat-containing 97.6 0.0002 4.4E-09 61.7 6.9 127 358-488 89-221 (304)
168 PF05843 Suf: Suppressor of fo 97.6 0.00062 1.3E-08 61.0 10.1 132 316-450 2-139 (280)
169 PF05843 Suf: Suppressor of fo 97.5 0.0026 5.7E-08 57.0 13.7 140 285-425 2-147 (280)
170 PF06239 ECSIT: Evolutionarily 97.5 0.001 2.2E-08 54.9 9.9 78 124-201 65-153 (228)
171 PRK10153 DNA-binding transcrip 97.5 0.004 8.7E-08 60.7 15.5 137 313-451 335-486 (517)
172 PRK02603 photosystem I assembl 97.5 0.0037 7.9E-08 51.6 13.3 130 314-468 34-166 (172)
173 CHL00033 ycf3 photosystem I as 97.5 0.0012 2.7E-08 54.2 10.2 92 386-478 35-138 (168)
174 COG4700 Uncharacterized protei 97.5 0.023 4.9E-07 45.7 16.2 125 346-474 85-214 (251)
175 PF10037 MRP-S27: Mitochondria 97.5 0.00091 2E-08 62.4 10.0 120 75-199 61-186 (429)
176 CHL00033 ycf3 photosystem I as 97.5 0.0022 4.7E-08 52.8 11.4 61 317-377 37-99 (168)
177 PF14938 SNAP: Soluble NSF att 97.5 0.034 7.3E-07 50.1 20.0 198 189-414 38-265 (282)
178 KOG1130 Predicted G-alpha GTPa 97.5 0.0013 2.9E-08 59.1 10.4 130 352-481 197-343 (639)
179 PRK10153 DNA-binding transcrip 97.5 0.0046 1E-07 60.2 15.0 137 345-486 332-486 (517)
180 PF10037 MRP-S27: Mitochondria 97.5 0.00099 2.2E-08 62.1 10.0 120 40-159 61-186 (429)
181 PF08579 RPM2: Mitochondrial r 97.4 0.0024 5.3E-08 46.5 9.5 79 319-398 29-116 (120)
182 PF06239 ECSIT: Evolutionarily 97.4 0.0031 6.6E-08 52.2 11.2 97 304-401 34-153 (228)
183 PF14559 TPR_19: Tetratricopep 97.4 0.00024 5.1E-09 48.2 4.1 54 429-483 2-55 (68)
184 PF14938 SNAP: Soluble NSF att 97.4 0.0064 1.4E-07 54.7 14.4 186 291-479 42-260 (282)
185 PRK15331 chaperone protein Sic 97.4 0.0032 6.9E-08 49.8 10.5 87 394-481 45-133 (165)
186 PF13414 TPR_11: TPR repeat; P 97.4 0.00047 1E-08 46.9 5.3 64 386-449 3-69 (69)
187 PF13432 TPR_16: Tetratricopep 97.4 0.00066 1.4E-08 45.4 5.8 59 392-450 3-63 (65)
188 PF12688 TPR_5: Tetratrico pep 97.4 0.0081 1.7E-07 45.5 12.1 93 321-413 7-102 (120)
189 PF13371 TPR_9: Tetratricopept 97.3 0.0011 2.3E-08 45.6 6.8 58 426-484 3-60 (73)
190 PRK10866 outer membrane biogen 97.3 0.039 8.4E-07 48.2 17.7 54 191-244 37-96 (243)
191 KOG2796 Uncharacterized conser 97.3 0.024 5.2E-07 48.2 15.3 165 287-451 139-319 (366)
192 PF07079 DUF1347: Protein of u 97.3 0.15 3.3E-06 47.2 29.3 63 417-481 459-523 (549)
193 PRK10866 outer membrane biogen 97.3 0.029 6.4E-07 49.0 16.7 58 423-480 180-239 (243)
194 KOG2053 Mitochondrial inherita 97.2 0.28 6.1E-06 49.3 37.8 408 56-488 20-508 (932)
195 PRK10803 tol-pal system protei 97.2 0.0035 7.5E-08 55.2 10.2 99 353-451 146-250 (263)
196 PF13281 DUF4071: Domain of un 97.2 0.056 1.2E-06 49.7 17.5 161 286-449 143-336 (374)
197 PF14559 TPR_19: Tetratricopep 97.2 0.0012 2.5E-08 44.7 5.4 49 363-414 4-53 (68)
198 COG5107 RNA14 Pre-mRNA 3'-end 97.1 0.25 5.5E-06 45.7 28.1 131 317-451 399-535 (660)
199 PRK10803 tol-pal system protei 97.1 0.0094 2E-07 52.5 11.3 85 397-481 154-245 (263)
200 KOG1538 Uncharacterized conser 97.1 0.29 6.4E-06 47.3 21.4 81 294-386 726-806 (1081)
201 COG4235 Cytochrome c biogenesi 97.0 0.035 7.5E-07 48.6 13.6 103 347-451 153-260 (287)
202 PF12688 TPR_5: Tetratrico pep 96.9 0.01 2.3E-07 44.9 9.2 90 356-446 7-103 (120)
203 COG3898 Uncharacterized membra 96.9 0.3 6.6E-06 44.3 24.8 209 197-414 165-391 (531)
204 KOG2280 Vacuolar assembly/sort 96.9 0.52 1.1E-05 46.6 26.6 151 57-213 401-573 (829)
205 PF13525 YfiO: Outer membrane 96.9 0.051 1.1E-06 46.2 14.0 167 291-474 12-199 (203)
206 PF12921 ATP13: Mitochondrial 96.8 0.02 4.3E-07 43.9 9.9 52 346-397 48-99 (126)
207 COG4700 Uncharacterized protei 96.8 0.2 4.3E-06 40.5 15.9 94 282-377 87-187 (251)
208 KOG2041 WD40 repeat protein [G 96.7 0.65 1.4E-05 45.6 23.8 62 77-140 689-763 (1189)
209 PF03704 BTAD: Bacterial trans 96.7 0.0066 1.4E-07 48.5 7.2 69 420-489 64-137 (146)
210 PF13424 TPR_12: Tetratricopep 96.7 0.0024 5.3E-08 44.5 4.1 60 420-479 7-72 (78)
211 KOG0550 Molecular chaperone (D 96.7 0.41 9E-06 43.8 18.5 88 324-414 258-349 (486)
212 KOG0543 FKBP-type peptidyl-pro 96.7 0.02 4.3E-07 52.0 10.5 95 387-482 258-355 (397)
213 PF13424 TPR_12: Tetratricopep 96.7 0.0039 8.4E-08 43.5 5.0 62 386-447 5-75 (78)
214 PF13371 TPR_9: Tetratricopept 96.6 0.0073 1.6E-07 41.4 6.0 58 394-451 3-62 (73)
215 COG3898 Uncharacterized membra 96.5 0.63 1.4E-05 42.4 25.9 286 189-487 85-397 (531)
216 PLN03098 LPA1 LOW PSII ACCUMUL 96.5 0.016 3.5E-07 53.9 8.9 97 385-485 74-177 (453)
217 PRK11619 lytic murein transgly 96.4 1.3 2.7E-05 45.0 30.3 261 190-479 103-372 (644)
218 KOG2280 Vacuolar assembly/sort 96.4 1.1 2.5E-05 44.3 29.4 111 349-476 683-793 (829)
219 KOG1538 Uncharacterized conser 96.4 0.59 1.3E-05 45.4 18.4 90 349-448 746-847 (1081)
220 KOG3941 Intermediate in Toll s 96.4 0.041 9E-07 47.3 9.8 114 99-212 53-185 (406)
221 KOG2610 Uncharacterized conser 96.3 0.099 2.2E-06 46.3 12.1 149 328-479 116-273 (491)
222 PF13281 DUF4071: Domain of un 96.3 0.38 8.3E-06 44.4 16.4 166 317-483 143-335 (374)
223 PF03704 BTAD: Bacterial trans 96.3 0.083 1.8E-06 42.1 11.1 71 317-388 64-138 (146)
224 PF09205 DUF1955: Domain of un 96.2 0.17 3.6E-06 38.3 11.0 140 326-485 13-152 (161)
225 KOG1130 Predicted G-alpha GTPa 96.2 0.076 1.6E-06 48.3 10.7 129 285-413 196-342 (639)
226 KOG2796 Uncharacterized conser 96.0 0.13 2.8E-06 44.0 10.9 134 352-487 179-320 (366)
227 PF04184 ST7: ST7 protein; In 96.0 1.2 2.7E-05 42.1 18.2 57 321-377 265-322 (539)
228 PRK15331 chaperone protein Sic 96.0 0.15 3.2E-06 40.6 10.7 91 324-417 46-136 (165)
229 PF13512 TPR_18: Tetratricopep 96.0 0.19 4.1E-06 39.1 11.0 71 394-464 18-93 (142)
230 PF13428 TPR_14: Tetratricopep 96.0 0.017 3.7E-07 34.8 4.4 40 420-460 3-42 (44)
231 COG5107 RNA14 Pre-mRNA 3'-end 96.0 1.4 3E-05 41.1 29.5 128 351-481 398-530 (660)
232 PF04053 Coatomer_WDAD: Coatom 95.9 0.3 6.6E-06 46.7 14.4 105 292-414 326-430 (443)
233 COG1729 Uncharacterized protei 95.9 0.14 3E-06 44.3 10.9 99 352-451 144-248 (262)
234 COG1729 Uncharacterized protei 95.8 0.066 1.4E-06 46.2 8.7 96 388-484 144-246 (262)
235 PLN03098 LPA1 LOW PSII ACCUMUL 95.8 0.11 2.5E-06 48.4 10.7 100 40-141 70-175 (453)
236 PF10300 DUF3808: Protein of u 95.8 0.57 1.2E-05 45.6 16.0 159 318-480 191-374 (468)
237 PF13431 TPR_17: Tetratricopep 95.7 0.009 2E-07 33.6 2.2 33 441-474 2-34 (34)
238 KOG0543 FKBP-type peptidyl-pro 95.7 0.12 2.7E-06 47.1 10.3 119 292-414 216-354 (397)
239 PF07079 DUF1347: Protein of u 95.6 1.9 4.2E-05 40.3 32.3 244 172-423 246-530 (549)
240 KOG3941 Intermediate in Toll s 95.6 0.14 3E-06 44.2 9.6 100 302-402 52-174 (406)
241 KOG1920 IkappaB kinase complex 95.6 2.4 5.1E-05 44.7 19.5 153 200-376 894-1052(1265)
242 KOG2041 WD40 repeat protein [G 95.5 2.8 6.1E-05 41.4 26.0 86 42-134 689-783 (1189)
243 COG3118 Thioredoxin domain-con 95.5 1.6 3.4E-05 38.5 16.4 170 302-474 121-293 (304)
244 PF13525 YfiO: Outer membrane 95.5 1.3 2.9E-05 37.5 18.3 53 192-244 11-69 (203)
245 PF12921 ATP13: Mitochondrial 95.5 0.15 3.3E-06 39.1 8.7 97 349-464 1-99 (126)
246 PRK11906 transcriptional regul 95.2 0.43 9.2E-06 44.9 12.3 159 316-478 252-432 (458)
247 PF10300 DUF3808: Protein of u 95.1 3.5 7.7E-05 40.2 21.3 160 115-277 192-375 (468)
248 KOG1585 Protein required for f 95.1 1.8 4E-05 36.9 15.2 113 363-477 123-251 (308)
249 KOG4555 TPR repeat-containing 95.1 0.21 4.6E-06 37.7 8.0 103 359-465 52-161 (175)
250 PF04184 ST7: ST7 protein; In 95.0 1 2.2E-05 42.7 13.8 61 386-446 259-323 (539)
251 KOG4555 TPR repeat-containing 94.9 0.14 2.9E-06 38.7 6.7 91 323-414 51-143 (175)
252 KOG2066 Vacuolar assembly/sort 94.8 4.9 0.00011 40.4 27.7 322 55-436 366-708 (846)
253 COG0457 NrfG FOG: TPR repeat [ 94.8 2.3 5E-05 36.5 23.8 193 286-481 61-264 (291)
254 smart00299 CLH Clathrin heavy 94.8 1.6 3.4E-05 34.4 14.1 87 47-137 9-95 (140)
255 PF04053 Coatomer_WDAD: Coatom 94.7 1.7 3.6E-05 41.8 15.2 153 294-477 271-426 (443)
256 PF13428 TPR_14: Tetratricopep 94.7 0.047 1E-06 32.9 3.2 41 454-496 2-42 (44)
257 COG4105 ComL DNA uptake lipopr 94.6 2.7 5.8E-05 36.3 19.8 157 323-480 42-231 (254)
258 PF13512 TPR_18: Tetratricopep 94.6 0.95 2.1E-05 35.3 10.8 52 325-377 20-74 (142)
259 PF13170 DUF4003: Protein of u 94.6 1.5 3.3E-05 39.5 13.9 130 263-395 76-226 (297)
260 PF09613 HrpB1_HrpK: Bacterial 94.6 1.6 3.4E-05 34.8 12.1 107 361-473 21-129 (160)
261 PF08631 SPO22: Meiosis protei 94.4 1 2.2E-05 40.5 12.4 167 326-494 4-197 (278)
262 KOG1585 Protein required for f 94.4 3 6.4E-05 35.7 14.0 57 353-410 193-251 (308)
263 COG4785 NlpI Lipoprotein NlpI, 94.3 2.8 6.1E-05 35.1 13.6 30 454-483 238-267 (297)
264 COG4105 ComL DNA uptake lipopr 94.2 3.4 7.3E-05 35.8 16.0 157 294-450 44-236 (254)
265 PRK11619 lytic murein transgly 94.1 7.5 0.00016 39.6 36.7 93 394-487 415-510 (644)
266 COG3629 DnrI DNA-binding trans 94.1 0.31 6.8E-06 42.9 8.3 73 387-459 154-233 (280)
267 KOG1941 Acetylcholine receptor 94.1 0.73 1.6E-05 41.5 10.4 193 286-478 45-271 (518)
268 COG2976 Uncharacterized protei 94.0 2.4 5.3E-05 34.9 12.3 89 358-449 97-190 (207)
269 smart00299 CLH Clathrin heavy 94.0 2.4 5.3E-05 33.3 14.6 125 319-464 11-136 (140)
270 PRK11906 transcriptional regul 93.9 3.6 7.8E-05 39.0 15.1 140 299-443 273-432 (458)
271 PF00637 Clathrin: Region in C 93.9 0.045 9.7E-07 43.5 2.5 88 49-139 11-98 (143)
272 KOG1258 mRNA processing protei 93.8 7.1 0.00015 38.1 31.0 199 283-487 296-512 (577)
273 KOG2114 Vacuolar assembly/sort 93.6 5.8 0.00012 40.3 16.4 142 291-444 375-516 (933)
274 PF02259 FAT: FAT domain; Int 93.5 3.5 7.6E-05 38.5 15.1 70 416-485 144-216 (352)
275 PF00515 TPR_1: Tetratricopept 93.4 0.29 6.2E-06 27.2 4.7 30 420-449 3-32 (34)
276 PF10602 RPN7: 26S proteasome 93.2 1 2.3E-05 37.1 9.4 60 387-446 37-101 (177)
277 PF13176 TPR_7: Tetratricopept 93.1 0.22 4.8E-06 28.3 3.9 26 455-480 1-26 (36)
278 PF07719 TPR_2: Tetratricopept 93.0 0.38 8.1E-06 26.7 4.8 31 420-450 3-33 (34)
279 PF08631 SPO22: Meiosis protei 92.9 6.8 0.00015 35.2 23.5 59 286-344 86-150 (278)
280 PF13176 TPR_7: Tetratricopept 92.9 0.12 2.7E-06 29.4 2.6 27 420-446 1-27 (36)
281 KOG4234 TPR repeat-containing 92.9 0.38 8.3E-06 39.4 6.2 103 358-461 103-210 (271)
282 COG4649 Uncharacterized protei 92.5 4 8.7E-05 32.9 11.0 136 314-451 58-200 (221)
283 COG2976 Uncharacterized protei 92.4 5.4 0.00012 32.9 13.3 90 392-483 95-189 (207)
284 PF13170 DUF4003: Protein of u 92.3 8.5 0.00018 34.8 18.7 130 331-462 78-226 (297)
285 PF09205 DUF1955: Domain of un 92.0 4.5 9.7E-05 31.0 13.6 136 227-382 12-151 (161)
286 PF07035 Mic1: Colon cancer-as 92.0 5.7 0.00012 32.2 13.3 120 131-261 14-133 (167)
287 TIGR02508 type_III_yscG type I 91.9 3.5 7.6E-05 29.7 9.1 89 59-151 19-107 (115)
288 COG3629 DnrI DNA-binding trans 91.8 1.1 2.4E-05 39.6 8.3 61 351-414 154-215 (280)
289 KOG1464 COP9 signalosome, subu 91.6 8.5 0.00019 33.5 17.7 239 198-443 39-328 (440)
290 PF10602 RPN7: 26S proteasome 91.5 5.3 0.00011 33.0 11.6 60 318-377 39-100 (177)
291 KOG1920 IkappaB kinase complex 91.3 23 0.0005 37.9 25.8 30 183-213 788-819 (1265)
292 KOG1941 Acetylcholine receptor 91.3 5.5 0.00012 36.3 11.9 43 197-239 17-65 (518)
293 KOG2114 Vacuolar assembly/sort 91.0 20 0.00044 36.6 26.5 213 43-274 281-515 (933)
294 KOG1464 COP9 signalosome, subu 90.8 9.8 0.00021 33.1 12.5 177 298-474 41-252 (440)
295 PRK09687 putative lyase; Provi 90.6 12 0.00027 33.5 25.8 60 184-243 35-98 (280)
296 KOG0276 Vesicle coat complex C 90.5 3.1 6.7E-05 40.4 10.2 105 292-414 645-749 (794)
297 PF02284 COX5A: Cytochrome c o 89.6 2.5 5.4E-05 30.6 6.8 60 333-394 28-87 (108)
298 KOG2610 Uncharacterized conser 89.5 16 0.00034 33.1 15.5 48 327-375 187-234 (491)
299 KOG4648 Uncharacterized conser 89.4 0.77 1.7E-05 41.0 5.2 110 358-475 105-217 (536)
300 COG0457 NrfG FOG: TPR repeat [ 89.3 13 0.00028 31.7 21.3 183 298-483 37-232 (291)
301 TIGR02561 HrpB1_HrpK type III 89.2 9 0.0002 30.1 10.2 48 363-415 23-73 (153)
302 COG2909 MalT ATP-dependent tra 89.2 30 0.00064 35.9 20.0 193 294-487 425-652 (894)
303 PRK15180 Vi polysaccharide bio 88.9 7.5 0.00016 36.8 11.2 89 361-451 334-424 (831)
304 PF02259 FAT: FAT domain; Int 88.9 20 0.00043 33.4 20.8 65 314-378 145-212 (352)
305 KOG0276 Vesicle coat complex C 88.9 14 0.00031 36.1 13.3 70 362-444 649-718 (794)
306 cd00923 Cyt_c_Oxidase_Va Cytoc 88.8 3.2 6.8E-05 29.7 6.8 62 331-394 23-84 (103)
307 COG1747 Uncharacterized N-term 88.3 25 0.00054 33.9 19.5 175 283-465 65-251 (711)
308 TIGR02561 HrpB1_HrpK type III 88.1 4.6 0.0001 31.7 8.0 99 385-487 6-111 (153)
309 KOG4648 Uncharacterized conser 88.1 3 6.6E-05 37.4 7.9 79 322-411 104-183 (536)
310 PF13181 TPR_8: Tetratricopept 88.1 1.3 2.9E-05 24.4 4.0 30 420-449 3-32 (34)
311 COG4649 Uncharacterized protei 88.0 13 0.00028 30.2 13.8 120 294-414 68-195 (221)
312 PF00515 TPR_1: Tetratricopept 88.0 1.3 2.9E-05 24.4 4.0 27 317-343 3-29 (34)
313 PF07721 TPR_4: Tetratricopept 87.9 0.85 1.8E-05 23.6 2.8 23 455-477 3-25 (26)
314 PF07719 TPR_2: Tetratricopept 87.8 0.98 2.1E-05 24.9 3.4 29 454-482 2-30 (34)
315 PF13374 TPR_10: Tetratricopep 87.7 1.2 2.6E-05 26.0 3.9 28 454-481 3-30 (42)
316 KOG4570 Uncharacterized conser 87.6 2.8 6.1E-05 37.2 7.3 100 279-379 59-164 (418)
317 PF09613 HrpB1_HrpK: Bacterial 87.5 5.5 0.00012 31.8 8.3 100 385-487 6-111 (160)
318 PF13431 TPR_17: Tetratricopep 87.2 1.2 2.6E-05 24.9 3.4 24 77-100 10-33 (34)
319 PF13174 TPR_6: Tetratricopept 87.2 1.4 3.1E-05 23.9 3.8 24 425-448 7-30 (33)
320 PF13374 TPR_10: Tetratricopep 86.9 1.8 4E-05 25.1 4.4 29 418-446 2-30 (42)
321 KOG1586 Protein required for f 86.5 20 0.00043 30.7 12.6 52 400-451 128-187 (288)
322 TIGR03504 FimV_Cterm FimV C-te 86.4 1.4 3.1E-05 26.3 3.5 26 458-483 4-29 (44)
323 KOG4234 TPR repeat-containing 86.3 13 0.00029 30.9 9.9 92 322-417 102-200 (271)
324 COG3118 Thioredoxin domain-con 86.3 24 0.00052 31.5 17.5 134 263-400 148-286 (304)
325 TIGR03504 FimV_Cterm FimV C-te 86.1 1.3 2.8E-05 26.5 3.2 26 423-448 4-29 (44)
326 PF04910 Tcf25: Transcriptiona 85.8 31 0.00067 32.3 13.7 58 424-481 109-167 (360)
327 KOG0890 Protein kinase of the 85.6 81 0.0018 36.9 29.6 161 50-223 1388-1552(2382)
328 PF00637 Clathrin: Region in C 85.6 1.5 3.2E-05 34.7 4.5 80 162-244 18-97 (143)
329 PF13181 TPR_8: Tetratricopept 85.5 2.2 4.7E-05 23.5 4.0 28 454-481 2-29 (34)
330 KOG1258 mRNA processing protei 85.3 40 0.00088 33.2 31.3 340 120-481 88-469 (577)
331 PF13174 TPR_6: Tetratricopept 85.1 1.3 2.9E-05 24.1 2.9 28 455-482 2-29 (33)
332 COG3947 Response regulator con 84.7 25 0.00053 31.3 11.3 59 318-377 282-340 (361)
333 PF11207 DUF2989: Protein of u 83.9 8.1 0.00018 32.2 7.9 77 396-473 117-198 (203)
334 KOG1586 Protein required for f 83.5 28 0.0006 29.9 14.5 55 397-451 165-228 (288)
335 PF13762 MNE1: Mitochondrial s 83.2 21 0.00045 28.2 9.5 86 71-156 28-125 (145)
336 cd00923 Cyt_c_Oxidase_Va Cytoc 83.2 4.2 9.1E-05 29.1 5.1 60 60-119 22-84 (103)
337 KOG4570 Uncharacterized conser 82.7 4.8 0.0001 35.8 6.4 101 345-447 59-164 (418)
338 PF04190 DUF410: Protein of un 82.4 35 0.00076 30.3 13.4 33 216-248 89-121 (260)
339 PRK09687 putative lyase; Provi 82.1 38 0.00082 30.5 27.9 61 77-137 34-98 (280)
340 PF07035 Mic1: Colon cancer-as 81.9 26 0.00057 28.4 15.1 134 171-343 14-148 (167)
341 KOG1550 Extracellular protein 81.8 61 0.0013 32.6 16.0 14 266-279 229-242 (552)
342 PF04190 DUF410: Protein of un 81.7 37 0.00081 30.1 13.1 133 92-236 2-140 (260)
343 COG3947 Response regulator con 80.9 40 0.00088 30.0 13.7 60 420-480 281-340 (361)
344 PF04097 Nic96: Nup93/Nic96; 80.7 21 0.00046 36.3 11.3 18 325-342 515-532 (613)
345 PF02284 COX5A: Cytochrome c o 80.0 3.6 7.8E-05 29.8 4.0 46 62-107 27-72 (108)
346 COG4785 NlpI Lipoprotein NlpI, 79.8 37 0.00079 28.8 14.9 162 281-451 95-270 (297)
347 KOG0890 Protein kinase of the 79.7 1.4E+02 0.0029 35.3 25.1 154 86-254 1389-1552(2382)
348 cd08819 CARD_MDA5_2 Caspase ac 79.1 13 0.00028 26.1 6.3 67 63-131 20-86 (88)
349 KOG0403 Neoplastic transformat 78.8 61 0.0013 30.8 18.3 64 421-485 512-575 (645)
350 KOG4077 Cytochrome c oxidase, 78.8 18 0.00038 27.5 7.3 48 60-107 64-111 (149)
351 COG2909 MalT ATP-dependent tra 78.0 94 0.002 32.5 30.7 213 263-478 429-684 (894)
352 smart00028 TPR Tetratricopepti 77.2 5.9 0.00013 20.5 3.9 24 423-446 6-29 (34)
353 COG5159 RPN6 26S proteasome re 77.2 29 0.00062 30.7 9.2 49 321-369 9-64 (421)
354 KOG3807 Predicted membrane pro 76.6 13 0.00028 33.5 7.2 56 356-411 281-336 (556)
355 PF10579 Rapsyn_N: Rapsyn N-te 75.1 10 0.00022 26.1 4.9 47 362-408 18-65 (80)
356 PF09477 Type_III_YscG: Bacter 74.7 31 0.00068 25.4 9.9 89 57-149 18-106 (116)
357 COG4455 ImpE Protein of avirul 74.0 55 0.0012 27.9 11.7 123 318-451 4-138 (273)
358 KOG4642 Chaperone-dependent E3 73.8 47 0.001 28.7 9.4 82 362-446 22-106 (284)
359 COG1747 Uncharacterized N-term 73.7 92 0.002 30.3 19.1 50 365-414 184-233 (711)
360 PF06552 TOM20_plant: Plant sp 73.6 24 0.00052 28.9 7.5 107 62-182 8-138 (186)
361 PF07163 Pex26: Pex26 protein; 73.5 66 0.0014 28.6 13.6 98 43-140 33-147 (309)
362 PF06552 TOM20_plant: Plant sp 73.5 50 0.0011 27.2 9.5 111 331-448 7-137 (186)
363 KOG0545 Aryl-hydrocarbon recep 72.8 19 0.0004 31.1 6.9 18 360-377 188-205 (329)
364 KOG4077 Cytochrome c oxidase, 72.7 19 0.00041 27.4 6.1 60 333-394 67-126 (149)
365 PF13762 MNE1: Mitochondrial s 72.6 40 0.00087 26.6 8.3 84 113-201 41-130 (145)
366 KOG1308 Hsp70-interacting prot 72.2 2.9 6.4E-05 37.6 2.3 116 361-481 125-243 (377)
367 PF08311 Mad3_BUB1_I: Mad3/BUB 72.2 42 0.00091 25.8 8.5 61 415-478 63-124 (126)
368 PF12926 MOZART2: Mitotic-spin 72.1 31 0.00066 24.2 6.6 63 43-107 8-70 (88)
369 PF10579 Rapsyn_N: Rapsyn N-te 71.3 9.4 0.0002 26.2 4.0 46 430-475 18-65 (80)
370 KOG3364 Membrane protein invol 70.3 26 0.00056 27.1 6.5 69 383-451 29-104 (149)
371 COG4455 ImpE Protein of avirul 70.2 22 0.00047 30.2 6.6 74 389-462 4-81 (273)
372 PRK10941 hypothetical protein; 70.0 30 0.00064 30.8 8.1 61 421-482 184-244 (269)
373 KOG2034 Vacuolar sorting prote 69.8 1.5E+02 0.0032 31.1 21.8 53 189-246 507-559 (911)
374 PRK13800 putative oxidoreducta 69.2 1.7E+02 0.0038 31.6 26.4 256 206-481 624-880 (897)
375 PF09986 DUF2225: Uncharacteri 69.2 43 0.00093 28.7 8.7 67 421-487 121-199 (214)
376 PF07163 Pex26: Pex26 protein; 68.8 65 0.0014 28.6 9.4 84 356-441 89-181 (309)
377 PF12862 Apc5: Anaphase-promot 68.8 23 0.00049 25.5 6.0 54 428-481 8-69 (94)
378 PF11846 DUF3366: Domain of un 68.7 22 0.00048 29.8 6.9 25 384-408 142-166 (193)
379 PF10345 Cohesin_load: Cohesin 68.1 1.5E+02 0.0032 30.4 36.3 185 295-480 372-604 (608)
380 PF04762 IKI3: IKI3 family; I 67.8 1.9E+02 0.004 31.4 16.4 45 221-265 698-749 (928)
381 cd00280 TRFH Telomeric Repeat 67.3 34 0.00073 28.1 7.0 28 395-422 120-147 (200)
382 PF14853 Fis1_TPR_C: Fis1 C-te 67.3 18 0.00039 22.7 4.5 29 423-451 6-34 (53)
383 PF09670 Cas_Cas02710: CRISPR- 65.8 1.2E+02 0.0027 28.7 12.1 50 294-343 141-197 (379)
384 KOG4642 Chaperone-dependent E3 65.4 16 0.00034 31.4 5.0 86 396-482 20-107 (284)
385 PF14689 SPOB_a: Sensor_kinase 65.3 13 0.00028 24.3 3.7 25 456-480 26-50 (62)
386 PF10255 Paf67: RNA polymerase 65.1 56 0.0012 31.0 9.2 56 390-445 126-191 (404)
387 KOG1550 Extracellular protein 64.5 1.6E+02 0.0036 29.6 23.7 77 167-244 228-320 (552)
388 PHA02875 ankyrin repeat protei 64.4 1.2E+02 0.0025 29.2 11.8 170 57-245 11-193 (413)
389 KOG2659 LisH motif-containing 63.8 95 0.0021 26.6 10.2 96 346-444 22-129 (228)
390 cd08819 CARD_MDA5_2 Caspase ac 63.6 50 0.0011 23.3 6.8 66 170-237 21-86 (88)
391 KOG0991 Replication factor C, 63.1 1E+02 0.0022 26.7 14.9 50 415-466 236-285 (333)
392 PF10366 Vps39_1: Vacuolar sor 62.9 36 0.00079 25.3 6.2 27 317-343 41-67 (108)
393 PF13929 mRNA_stabil: mRNA sta 62.7 1.2E+02 0.0025 27.3 19.2 62 415-476 199-261 (292)
394 KOG4507 Uncharacterized conser 62.7 24 0.00051 34.6 6.3 95 363-461 620-718 (886)
395 PF15469 Sec5: Exocyst complex 62.2 30 0.00064 28.7 6.4 117 353-495 60-181 (182)
396 PRK12798 chemotaxis protein; R 62.1 1.5E+02 0.0032 28.2 21.8 186 297-486 125-328 (421)
397 KOG0376 Serine-threonine phosp 61.7 8.3 0.00018 36.6 3.2 92 357-451 11-105 (476)
398 PF11846 DUF3366: Domain of un 61.5 32 0.0007 28.8 6.6 35 415-449 141-175 (193)
399 smart00386 HAT HAT (Half-A-TPR 61.4 19 0.00042 19.0 3.7 29 432-461 1-29 (33)
400 PF11848 DUF3368: Domain of un 60.7 32 0.0007 21.0 4.7 34 121-154 12-45 (48)
401 PF11838 ERAP1_C: ERAP1-like C 60.5 1.4E+02 0.003 27.4 18.4 110 366-477 146-261 (324)
402 PF13929 mRNA_stabil: mRNA sta 60.4 1.3E+02 0.0028 27.0 23.3 109 232-340 143-263 (292)
403 KOG2066 Vacuolar assembly/sort 60.4 2.1E+02 0.0046 29.6 25.6 140 49-217 396-536 (846)
404 KOG1498 26S proteasome regulat 60.1 1.5E+02 0.0033 27.8 13.8 100 390-493 135-252 (439)
405 PF14561 TPR_20: Tetratricopep 59.0 39 0.00086 24.1 5.6 55 416-470 20-75 (90)
406 PF04097 Nic96: Nup93/Nic96; 59.0 2.2E+02 0.0047 29.2 20.9 49 44-93 110-158 (613)
407 PF12069 DUF3549: Protein of u 58.4 1.5E+02 0.0033 27.3 13.1 132 289-424 171-304 (340)
408 KOG0551 Hsp90 co-chaperone CNS 58.1 28 0.0006 31.6 5.5 81 395-476 90-176 (390)
409 TIGR02508 type_III_yscG type I 57.8 72 0.0016 23.3 10.6 88 264-355 20-107 (115)
410 PF11817 Foie-gras_1: Foie gra 57.8 36 0.00078 29.9 6.4 52 389-440 181-240 (247)
411 PF14689 SPOB_a: Sensor_kinase 57.1 12 0.00026 24.4 2.5 23 422-444 27-49 (62)
412 PRK10564 maltose regulon perip 57.0 21 0.00045 31.9 4.6 44 109-152 254-298 (303)
413 PF10366 Vps39_1: Vacuolar sor 56.9 63 0.0014 24.0 6.6 27 113-139 41-67 (108)
414 PF11663 Toxin_YhaV: Toxin wit 56.8 14 0.00031 28.4 3.1 32 123-156 107-138 (140)
415 PF08424 NRDE-2: NRDE-2, neces 56.7 1.6E+02 0.0036 27.1 12.4 115 331-449 47-185 (321)
416 KOG4521 Nuclear pore complex, 56.5 3E+02 0.0066 30.1 15.0 124 353-476 986-1125(1480)
417 PF08311 Mad3_BUB1_I: Mad3/BUB 56.2 89 0.0019 24.0 7.6 43 267-309 81-124 (126)
418 KOG2396 HAT (Half-A-TPR) repea 56.0 2.1E+02 0.0045 28.0 19.3 109 301-412 445-556 (568)
419 KOG2063 Vacuolar assembly/sort 55.8 2.8E+02 0.0061 29.6 16.1 27 219-245 506-532 (877)
420 KOG2471 TPR repeat-containing 54.5 2.2E+02 0.0047 27.8 13.0 103 362-466 252-382 (696)
421 PF11848 DUF3368: Domain of un 54.1 49 0.0011 20.2 5.2 33 326-358 13-45 (48)
422 PRK13800 putative oxidoreducta 54.1 3.2E+02 0.007 29.7 27.9 94 312-413 786-879 (897)
423 KOG2063 Vacuolar assembly/sort 53.2 3.1E+02 0.0068 29.3 15.6 110 83-198 507-638 (877)
424 PRK13342 recombination factor 51.6 2.3E+02 0.005 27.3 14.8 42 114-155 230-274 (413)
425 KOG0403 Neoplastic transformat 51.6 2.3E+02 0.005 27.2 22.1 28 219-246 347-374 (645)
426 PF12862 Apc5: Anaphase-promot 51.6 52 0.0011 23.6 5.4 24 424-447 47-70 (94)
427 KOG4507 Uncharacterized conser 50.7 1.3E+02 0.0029 29.9 9.0 97 295-395 618-719 (886)
428 KOG4814 Uncharacterized conser 50.4 62 0.0014 32.3 6.9 84 397-481 365-456 (872)
429 KOG0687 26S proteasome regulat 50.3 2E+02 0.0044 26.3 12.5 115 351-467 105-230 (393)
430 PRK10564 maltose regulon perip 50.1 36 0.00077 30.6 5.0 42 316-357 258-299 (303)
431 PF09868 DUF2095: Uncharacteri 50.1 48 0.001 24.6 4.7 43 50-93 66-108 (128)
432 COG4976 Predicted methyltransf 49.7 41 0.00088 28.9 4.9 54 398-451 7-62 (287)
433 PF14669 Asp_Glu_race_2: Putat 49.1 1.6E+02 0.0034 24.6 12.0 23 289-311 137-159 (233)
434 KOG2034 Vacuolar sorting prote 48.8 3.5E+02 0.0076 28.6 22.5 51 194-244 366-416 (911)
435 KOG4279 Serine/threonine prote 48.3 1.5E+02 0.0032 30.5 9.2 172 267-451 181-399 (1226)
436 TIGR02270 conserved hypothetic 47.9 2.6E+02 0.0057 26.9 22.8 226 193-438 45-272 (410)
437 PF11663 Toxin_YhaV: Toxin wit 47.1 27 0.00059 26.9 3.3 31 327-359 107-137 (140)
438 KOG2908 26S proteasome regulat 47.1 2.3E+02 0.0049 26.2 9.3 81 392-472 81-176 (380)
439 PF14853 Fis1_TPR_C: Fis1 C-te 46.6 73 0.0016 20.0 4.7 30 321-352 7-36 (53)
440 PF03745 DUF309: Domain of unk 46.4 79 0.0017 20.7 5.0 15 398-412 11-25 (62)
441 PF11817 Foie-gras_1: Foie gra 46.4 90 0.002 27.4 7.1 77 404-480 163-245 (247)
442 KOG0991 Replication factor C, 46.3 2E+02 0.0043 25.0 11.0 56 294-350 202-273 (333)
443 KOG0686 COP9 signalosome, subu 46.0 1.2E+02 0.0027 28.5 7.8 25 389-413 153-177 (466)
444 smart00777 Mad3_BUB1_I Mad3/BU 45.9 1.4E+02 0.003 23.0 8.0 71 404-477 51-123 (125)
445 cd00280 TRFH Telomeric Repeat 45.7 1.5E+02 0.0033 24.5 7.4 21 357-377 118-138 (200)
446 COG5108 RPO41 Mitochondrial DN 45.7 94 0.002 31.3 7.3 43 85-127 33-81 (1117)
447 PRK14958 DNA polymerase III su 45.6 2.8E+02 0.0062 27.6 11.0 35 341-377 191-225 (509)
448 PRK14956 DNA polymerase III su 45.5 2.6E+02 0.0057 27.5 10.4 44 332-377 183-227 (484)
449 PRK08691 DNA polymerase III su 45.1 2.6E+02 0.0056 29.0 10.6 45 331-377 180-225 (709)
450 KOG2908 26S proteasome regulat 45.0 85 0.0018 28.7 6.4 70 423-492 80-159 (380)
451 PF11207 DUF2989: Protein of u 44.7 1.9E+02 0.0042 24.4 13.6 21 385-405 177-197 (203)
452 COG5187 RPN7 26S proteasome re 44.1 2.4E+02 0.0052 25.3 10.1 116 350-467 115-241 (412)
453 PRK07003 DNA polymerase III su 44.0 2.8E+02 0.006 29.2 10.6 45 331-377 180-225 (830)
454 PF13934 ELYS: Nuclear pore co 43.6 2.2E+02 0.0047 24.7 12.9 21 356-376 114-134 (226)
455 PRK13184 pknD serine/threonine 43.3 4.7E+02 0.01 28.4 22.5 43 201-243 534-578 (932)
456 PF12968 DUF3856: Domain of Un 43.2 1.2E+02 0.0027 23.0 6.0 60 418-478 55-125 (144)
457 TIGR03581 EF_0839 conserved hy 43.0 1.6E+02 0.0034 25.1 7.2 80 401-480 136-235 (236)
458 KOG2396 HAT (Half-A-TPR) repea 42.7 3.4E+02 0.0073 26.6 31.5 210 265-480 337-557 (568)
459 COG4003 Uncharacterized protei 42.6 70 0.0015 22.1 4.3 36 50-86 36-71 (98)
460 PRK14951 DNA polymerase III su 42.5 3.1E+02 0.0067 28.1 10.8 44 332-377 186-230 (618)
461 cd08326 CARD_CASP9 Caspase act 42.3 1.2E+02 0.0026 21.3 6.2 40 197-236 41-80 (84)
462 PF10345 Cohesin_load: Cohesin 41.8 4.1E+02 0.0088 27.3 28.7 184 262-446 374-605 (608)
463 smart00777 Mad3_BUB1_I Mad3/BU 41.6 1.6E+02 0.0035 22.6 6.9 42 267-308 81-123 (125)
464 KOG4567 GTPase-activating prot 41.2 1.7E+02 0.0037 26.5 7.6 58 268-326 262-319 (370)
465 KOG0545 Aryl-hydrocarbon recep 41.0 1.9E+02 0.0041 25.3 7.6 83 294-377 188-291 (329)
466 COG0735 Fur Fe2+/Zn2+ uptake r 40.6 1.8E+02 0.004 23.0 7.4 40 321-360 26-65 (145)
467 PF09477 Type_III_YscG: Bacter 40.6 1.5E+02 0.0033 22.0 10.1 75 167-244 22-96 (116)
468 COG0790 FOG: TPR repeat, SEL1 40.3 2.8E+02 0.006 25.0 19.9 78 404-485 173-269 (292)
469 PF04090 RNA_pol_I_TF: RNA pol 40.2 1.6E+02 0.0036 24.7 7.1 60 420-479 43-102 (199)
470 PF14669 Asp_Glu_race_2: Putat 39.5 2.3E+02 0.005 23.8 13.2 56 422-477 136-205 (233)
471 PLN03025 replication factor C 39.3 3.1E+02 0.0067 25.2 11.7 125 367-495 161-301 (319)
472 COG5159 RPN6 26S proteasome re 39.2 2.9E+02 0.0063 24.8 18.8 129 250-378 86-234 (421)
473 PF13934 ELYS: Nuclear pore co 39.1 2.6E+02 0.0056 24.2 13.3 108 345-465 74-184 (226)
474 PF10255 Paf67: RNA polymerase 39.1 3.6E+02 0.0077 25.9 10.2 95 320-414 80-192 (404)
475 COG5108 RPO41 Mitochondrial DN 39.1 1.9E+02 0.0041 29.3 8.3 76 320-395 33-112 (1117)
476 PF10475 DUF2450: Protein of u 38.9 2.9E+02 0.0063 25.0 9.3 113 290-409 104-220 (291)
477 smart00638 LPD_N Lipoprotein N 38.6 4.4E+02 0.0095 26.8 18.6 218 266-486 292-529 (574)
478 PF04910 Tcf25: Transcriptiona 38.5 3.4E+02 0.0075 25.5 18.0 30 183-212 37-66 (360)
479 KOG2062 26S proteasome regulat 38.4 4.8E+02 0.01 27.1 22.2 119 360-481 511-634 (929)
480 PRK14963 DNA polymerase III su 38.4 3.4E+02 0.0074 27.0 10.2 45 331-377 177-222 (504)
481 KOG3364 Membrane protein invol 38.4 1.1E+02 0.0023 24.0 5.2 66 347-414 29-99 (149)
482 PF12796 Ank_2: Ankyrin repeat 38.3 1.3E+02 0.0029 20.8 6.0 13 92-104 6-18 (89)
483 COG4259 Uncharacterized protei 38.2 1.5E+02 0.0032 21.7 5.5 50 438-489 57-106 (121)
484 PF09670 Cas_Cas02710: CRISPR- 37.9 3.6E+02 0.0078 25.6 10.5 54 323-377 139-196 (379)
485 PHA02875 ankyrin repeat protei 37.9 3.7E+02 0.008 25.7 11.0 206 224-452 6-229 (413)
486 PRK11639 zinc uptake transcrip 37.8 1.6E+02 0.0036 24.0 6.9 43 322-364 32-74 (169)
487 PF11838 ERAP1_C: ERAP1-like C 37.6 3.2E+02 0.007 24.9 17.5 57 318-377 172-228 (324)
488 cd08326 CARD_CASP9 Caspase act 37.3 1.5E+02 0.0032 20.9 5.9 63 64-130 18-80 (84)
489 PRK10941 hypothetical protein; 37.2 3.1E+02 0.0066 24.6 10.1 67 320-387 186-252 (269)
490 KOG0292 Vesicle coat complex C 37.0 64 0.0014 33.6 5.0 26 387-412 673-698 (1202)
491 KOG1498 26S proteasome regulat 36.8 3.7E+02 0.008 25.4 15.5 23 289-311 136-158 (439)
492 PRK09857 putative transposase; 36.7 2E+02 0.0044 26.1 7.8 65 422-487 210-274 (292)
493 KOG0686 COP9 signalosome, subu 36.6 3.8E+02 0.0083 25.5 14.0 90 286-377 152-256 (466)
494 cd07153 Fur_like Ferric uptake 36.4 1E+02 0.0023 23.0 5.3 47 320-366 5-51 (116)
495 cd08332 CARD_CASP2 Caspase act 36.1 1.6E+02 0.0035 21.0 5.7 59 64-126 22-80 (90)
496 KOG1463 26S proteasome regulat 36.0 3.4E+02 0.0074 25.1 8.7 138 357-495 11-170 (411)
497 PF14561 TPR_20: Tetratricopep 35.6 1.6E+02 0.0035 20.9 7.7 50 385-434 21-74 (90)
498 cd07153 Fur_like Ferric uptake 35.0 1.1E+02 0.0024 22.9 5.2 48 50-97 5-52 (116)
499 KOG1524 WD40 repeat-containing 34.7 2.2E+02 0.0047 28.0 7.7 74 183-258 570-643 (737)
500 PF12926 MOZART2: Mitotic-spin 32.9 1.8E+02 0.0039 20.6 6.6 42 172-213 29-70 (88)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.7e-71 Score=561.36 Aligned_cols=451 Identities=33% Similarity=0.612 Sum_probs=440.2
Q ss_pred CCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHH
Q 010837 41 NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAG 120 (499)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~ 120 (499)
..|+..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.++.+|++.|++++|.++|++|++||..+||.+|.+
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~ 198 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGG 198 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCC
Q 010837 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGG 200 (499)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 200 (499)
|++.|++++|+++|++|.+.|+.||..||+.++.+| ...+..+.+.+++..+.+.|+.||..+|+.|+++|+++|
T Consensus 199 ~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~-----~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 199 LVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS-----AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH-----hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999 888899999999999999999999999999999999999
Q ss_pred ChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcC----CCChhhHHHHHHHHhcChhhHHHHHHHHHHHH
Q 010837 201 KTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSISIETARKALEVHCQLI 276 (499)
Q Consensus 201 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~ 276 (499)
++++|.++|++|.++|+++||+++.+|++.|++++|+++|++|. .||..||+.++.+|++. +..++|.+++..|.
T Consensus 274 ~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~-g~~~~a~~i~~~m~ 352 (697)
T PLN03081 274 DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL-ALLEHAKQAHAGLI 352 (697)
T ss_pred CHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-cchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999995 78999999999999988 88999999999999
Q ss_pred HcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010837 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356 (499)
Q Consensus 277 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 356 (499)
+.|+.||..+|++|+++|++.|++++|.++|++|.++|..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.+
T Consensus 353 ~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~l 432 (697)
T PLN03081 353 RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAV 432 (697)
T ss_pred HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHH
Q 010837 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEM 436 (499)
Q Consensus 357 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 436 (499)
+.+|++.|.+++|.++|+.|.++.|+.|+..+|+.++++|++.|++++|.++++++..+|+..+|+.|+.+|...|+++.
T Consensus 433 l~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~ 512 (697)
T PLN03081 433 LSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLEL 512 (697)
T ss_pred HHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHH
Confidence 99999999999999999999977899999999999999999999999999999999989999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCccccccccCCC
Q 010837 437 ANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498 (499)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (499)
|..+++++.+.+|.. ..+|..++.+|++.|++++|.++++.|.+.|+.+.++++||+++++
T Consensus 513 a~~~~~~l~~~~p~~-~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~ 573 (697)
T PLN03081 513 GRLAAEKLYGMGPEK-LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQ 573 (697)
T ss_pred HHHHHHHHhCCCCCC-CcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCe
Confidence 999999999888876 7899999999999999999999999999999999999999998764
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=2.2e-69 Score=558.77 Aligned_cols=457 Identities=32% Similarity=0.533 Sum_probs=440.8
Q ss_pred ccccccCCCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHH
Q 010837 34 QNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSA 113 (499)
Q Consensus 34 ~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 113 (499)
..+...+..||..+|+.++.+|++.|+++.|.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+||+.+
T Consensus 277 ~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s 356 (857)
T PLN03077 277 FTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVS 356 (857)
T ss_pred HHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeee
Confidence 34555677888888888888888888888888888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHH
Q 010837 114 YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALV 193 (499)
Q Consensus 114 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 193 (499)
||.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+| ...++.+.+.++++.+.+.|+.|+..+|+.|+
T Consensus 357 ~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~-----~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li 431 (857)
T PLN03077 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC-----ACLGDLDVGVKLHELAERKGLISYVVVANALI 431 (857)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHH-----hccchHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 9999999999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHhcChhhHHHHHH
Q 010837 194 DSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV---EKDIVVYNAMIEGYSISIETARKALE 270 (499)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~ 270 (499)
++|+++|++++|.++|++|.++|..+|++++.+|++.|+.++|+++|++|. .||..||+.+|.+|++. |..+.+.+
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~-g~l~~~~~ 510 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARI-GALMCGKE 510 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhh-chHHHhHH
Confidence 999999999999999999999999999999999999999999999999997 79999999999999888 88999999
Q ss_pred HHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 010837 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY 350 (499)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 350 (499)
++..+.+.|+.++..++++|+++|++.|++++|.++|+.+ .+|..+|+++|.+|++.|+.++|.++|++|.+.|+.||.
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~ 589 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE 589 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc
Confidence 9999999999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 010837 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRL 430 (499)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~ 430 (499)
.||+.++.+|++.|.+++|.++|+.|.++.|+.|+..+|+.++++|++.|++++|.+++++|.-+||..+|++|+.+|..
T Consensus 590 ~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~ 669 (857)
T PLN03077 590 VTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRI 669 (857)
T ss_pred ccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999977899999999999999999999999999999999888999999999999999
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCccccccccCCC
Q 010837 431 HDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTESG 498 (499)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 498 (499)
.|+.+.++...+++.+..|.. ...|..+.+.|.+.|+|++|.++.+.|.+.|+++++++|||+++++
T Consensus 670 ~~~~e~~e~~a~~l~~l~p~~-~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~ 736 (857)
T PLN03077 670 HRHVELGELAAQHIFELDPNS-VGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGK 736 (857)
T ss_pred cCChHHHHHHHHHHHhhCCCC-cchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCE
Confidence 999999999999999999887 8899999999999999999999999999999999999999999875
No 3
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.7e-66 Score=534.72 Aligned_cols=438 Identities=24% Similarity=0.348 Sum_probs=410.8
Q ss_pred CCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCC-----------------------------------ChHHHHHHH
Q 010837 43 LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKP-----------------------------------NTNISIKLL 87 (499)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------------------------~~~~~~~l~ 87 (499)
|+..+|+.+|.+|++.|++++|.++|++|.+.|+.| |..+++.|+
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 466666666666666666666666666666555555 455567888
Q ss_pred HHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcc
Q 010837 88 ILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR 167 (499)
Q Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~ 167 (499)
.+|+++|++++|.++|++|+++|+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+| ...++.
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~-----~~~g~~ 304 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISAC-----ELLGDE 304 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHH-----HhcCCh
Confidence 889999999999999999999999999999999999999999999999999999999999999999999 889999
Q ss_pred hhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcC---
Q 010837 168 NLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV--- 244 (499)
Q Consensus 168 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--- 244 (499)
+.+.+++..+.+.|+.||..+|+.|+.+|+++|++++|.++|++|.++|..+|++++.+|++.|++++|+++|++|.
T Consensus 305 ~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g 384 (857)
T PLN03077 305 RLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDN 384 (857)
T ss_pred HHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -CCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHH
Q 010837 245 -EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMID 323 (499)
Q Consensus 245 -~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~ 323 (499)
.||..+|+.++.+|++. ++.+.+.++++.+.+.|+.|+..+|++|+++|++.|++++|.++|++|.++|..+|+.+|.
T Consensus 385 ~~Pd~~t~~~ll~a~~~~-g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~ 463 (857)
T PLN03077 385 VSPDEITIASVLSACACL-GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463 (857)
T ss_pred CCCCceeHHHHHHHHhcc-chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHH
Confidence 69999999999999888 8899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHH
Q 010837 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE 403 (499)
Q Consensus 324 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 403 (499)
+|++.|+.++|.++|++|.. ++.||..||+.++.+|++.|+++.+.+++..+. +.|+.++..++++|+++|+++|+++
T Consensus 464 ~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~-~~g~~~~~~~~naLi~~y~k~G~~~ 541 (857)
T PLN03077 464 GLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL-RTGIGFDGFLPNALLDLYVRCGRMN 541 (857)
T ss_pred HHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH-HhCCCccceechHHHHHHHHcCCHH
Confidence 99999999999999999986 599999999999999999999999999999999 6699999999999999999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHH-hC
Q 010837 404 QALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK-LR 482 (499)
Q Consensus 404 ~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 482 (499)
+|.++|+.+ .||..+|+++|.+|++.|+.++|.++|++|.+.|..|+..+|+.++.+|.+.|++++|.++|+.|. +.
T Consensus 542 ~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~ 619 (857)
T PLN03077 542 YAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619 (857)
T ss_pred HHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHh
Confidence 999999999 689999999999999999999999999999999999999999999999999999999999999999 78
Q ss_pred CCccCccc
Q 010837 483 GVLKDTGC 490 (499)
Q Consensus 483 ~~~~~~~~ 490 (499)
|+.|+..+
T Consensus 620 gi~P~~~~ 627 (857)
T PLN03077 620 SITPNLKH 627 (857)
T ss_pred CCCCchHH
Confidence 99998643
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=3.1e-63 Score=503.67 Aligned_cols=445 Identities=16% Similarity=0.214 Sum_probs=421.5
Q ss_pred cCCCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCC-CCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHH
Q 010837 39 LSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGV-KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYM 117 (499)
Q Consensus 39 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 117 (499)
.+..++...|..++..|++.|++++|.++|++|.+.|+ .++..+++.++..|.+.|.+++|..+|+.|..||..+|+.+
T Consensus 364 ~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~L 443 (1060)
T PLN03218 364 VSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNML 443 (1060)
T ss_pred cCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 34456788899999999999999999999999999985 56888889999999999999999999999999999999999
Q ss_pred HHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 010837 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYV 197 (499)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (499)
|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+| .+.++.+.|.++|++|.+.|+.||..+|+.+|.+|+
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y-----~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~ 518 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTC-----AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCA 518 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 899999999999999999999999999999999999
Q ss_pred hCCChhHHHHHHHhccC----CChHhHHHHHHHHHhCCCHHHHHHHHHhcC------CCChhhHHHHHHHHhcChhhHHH
Q 010837 198 KGGKTSYARIVFDMMLE----KNVICSTSMISGFMSQGFVEDAEEIFRKTV------EKDIVVYNAMIEGYSISIETARK 267 (499)
Q Consensus 198 ~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------~~~~~~~~~ll~~~~~~~~~~~~ 267 (499)
+.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++. |+.++
T Consensus 519 k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~-G~lde 597 (1060)
T PLN03218 519 RAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA-GQVDR 597 (1060)
T ss_pred HCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC-CCHHH
Confidence 99999999999999954 689999999999999999999999999994 58999999999999988 88999
Q ss_pred HHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 010837 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ----KNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343 (499)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (499)
|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++|.+++++|.+
T Consensus 598 A~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999984 7999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CCCHHH
Q 010837 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDV 420 (499)
Q Consensus 344 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~ 420 (499)
.|+.||..+|+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.||.+|++.|++++|.++|++|.. .||..+
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~-~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~T 756 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK-SIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTIT 756 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHH
Confidence 9999999999999999999999999999999998 569999999999999999999999999999999976 699999
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh----c-------------------CChHHHHHHHH
Q 010837 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA----A-------------------GKWDSVTELRE 477 (499)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~ 477 (499)
|+.++.+|++.|++++|.+++++|.+.|..|+..+|+.++..|.+ . +..++|..+|+
T Consensus 757 y~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~ 836 (1060)
T PLN03218 757 YSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYR 836 (1060)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHH
Confidence 999999999999999999999999999999999999999876542 2 12467999999
Q ss_pred HHHhCCCccCccc
Q 010837 478 KMKLRGVLKDTGC 490 (499)
Q Consensus 478 ~~~~~~~~~~~~~ 490 (499)
+|.+.|+.||..+
T Consensus 837 eM~~~Gi~Pd~~T 849 (1060)
T PLN03218 837 ETISAGTLPTMEV 849 (1060)
T ss_pred HHHHCCCCCCHHH
Confidence 9999999999644
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.4e-62 Score=498.99 Aligned_cols=438 Identities=18% Similarity=0.222 Sum_probs=412.3
Q ss_pred CCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC----CCChHHHHHHH
Q 010837 43 LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP----QRTLSAYNYMI 118 (499)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li 118 (499)
|+..+|+.++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999998 58999999999
Q ss_pred HHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHH--cCCCCchhHHHHHHHHH
Q 010837 119 AGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK--CDVKADDVLYTALVDSY 196 (499)
Q Consensus 119 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~ 196 (499)
.+|++.|++++|.++|++|.+.|+.||..||+.+|.+| .+.++.+.|.+++.+|.+ .|+.||..+|++|+.+|
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~-----~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC-----GQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999 889999999999999986 68999999999999999
Q ss_pred HhCCChhHHHHHHHhccCC----ChHhHHHHHHHHHhCCCHHHHHHHHHhcC----CCChhhHHHHHHHHhcChhhHHHH
Q 010837 197 VKGGKTSYARIVFDMMLEK----NVICSTSMISGFMSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSISIETARKA 268 (499)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~a 268 (499)
++.|++++|.++|+.|.+. +..+|+.+|.+|++.|++++|.++|++|. .||..+|+.++.+|++. ++.++|
T Consensus 590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~-G~~eeA 668 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA-GDLDKA 668 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC-CCHHHH
Confidence 9999999999999999764 66899999999999999999999999997 68999999999999988 889999
Q ss_pred HHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcC----CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 010837 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ----QKNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344 (499)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (499)
.+++++|.+.|+.|+..+|++|+.+|++.|++++|.++|++|. .||..+|+.||.+|++.|++++|.++|++|.+.
T Consensus 669 ~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 669 FEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999995 589999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHh----c-------------------CC
Q 010837 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR----A-------------------GS 401 (499)
Q Consensus 345 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------~~ 401 (499)
|+.||..||+.++.+|++.|++++|.+++++|. +.|+.||..+|+.++..+.+ + +.
T Consensus 749 Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~-k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w 827 (1060)
T PLN03218 749 GLCPNTITYSILLVASERKDDADVGLDLLSQAK-EDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKW 827 (1060)
T ss_pred CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccch
Confidence 999999999999999999999999999999998 66999999999999876432 1 12
Q ss_pred HHHHHHHHHhCCC---CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHH
Q 010837 402 LEQALKFVLEMPE---KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 402 ~~~a~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
.+.|..+|++|.+ .||..||+.++.+++..+..+.+..+++.+...+..++..+|+.++.++.+. .++|..++++
T Consensus 828 ~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~e 905 (1060)
T PLN03218 828 TSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEE 905 (1060)
T ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHH
Confidence 4679999999988 6999999999988888899999999999988888888889999999998432 3689999999
Q ss_pred HHhCCCccCcc
Q 010837 479 MKLRGVLKDTG 489 (499)
Q Consensus 479 ~~~~~~~~~~~ 489 (499)
|...|+.|+..
T Consensus 906 m~~~Gi~p~~~ 916 (1060)
T PLN03218 906 AASLGVVPSVS 916 (1060)
T ss_pred HHHcCCCCCcc
Confidence 99999999975
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.8e-57 Score=459.30 Aligned_cols=432 Identities=15% Similarity=0.175 Sum_probs=403.8
Q ss_pred CCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhC-CCCChHHHHHHHHHHHcCCChhHHHHHhccCC----CCChHHHHH
Q 010837 42 PLTATSLPSALQHYINSDTPFYGLKIHAHITKTG-VKPNTNISIKLLILHLKCGALKYAGQMFDELP----QRTLSAYNY 116 (499)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~ 116 (499)
+.+..+++.+|..+.+.|++++|.++|+.|...+ +.||..+|+.++.++++.++++.+.+++..|. .||+.+||.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3455689999999999999999999999999864 78999999999999999999999999999886 489999999
Q ss_pred HHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHH
Q 010837 117 MIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSY 196 (499)
Q Consensus 117 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 196 (499)
|+..|++.|++++|.++|++|. .||..+|+.++.+| .+.++.+.|..+|++|.+.|+.|+..+|+.++.+|
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~-----~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~ 234 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGL-----VDAGNYREAFALFREMWEDGSDAEPRTFVVMLRAS 234 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHH-----HHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHH
Confidence 9999999999999999999996 58999999999999 88899999999999999999999999999999999
Q ss_pred HhCCChhHHHHHHHhccC----CChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHH
Q 010837 197 VKGGKTSYARIVFDMMLE----KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVH 272 (499)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~ 272 (499)
++.|+.+.+.+++..+.+ +|..+|++++.+|++.|++++|.++|++|.++|..+|+.+|.+|++. |..++|.++|
T Consensus 235 ~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~-g~~~eA~~lf 313 (697)
T PLN03081 235 AGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALH-GYSEEALCLY 313 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhC-CCHHHHHHHH
Confidence 999999999999888754 58899999999999999999999999999999999999999999998 8899999999
Q ss_pred HHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 010837 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ----KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348 (499)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 348 (499)
++|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+ +|..+|++|+.+|++.|++++|.++|++|. .|
T Consensus 314 ~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~ 389 (697)
T PLN03081 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RK 389 (697)
T ss_pred HHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CC
Confidence 9999999999999999999999999999999999999874 689999999999999999999999999996 47
Q ss_pred CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCCHHHHHHH
Q 010837 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE----KPNSDVWAAL 424 (499)
Q Consensus 349 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~l 424 (499)
|..+|+.+|.+|++.|+.++|.++|++|. +.|+.||..+|+.++.+|.+.|..++|.++|+.|.+ .|+..+|+.+
T Consensus 390 d~~t~n~lI~~y~~~G~~~~A~~lf~~M~-~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 390 NLISWNALIAGYGNHGRGTKAVEMFERMI-AEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CeeeHHHHHHHHHHcCCHHHHHHHHHHHH-HhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 89999999999999999999999999999 559999999999999999999999999999999975 5999999999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCcccccc
Q 010837 425 LSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493 (499)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 493 (499)
+.+|++.|++++|.++++++ +..|+..+|+.|+.+|...|+++.|.++++++.+ +.|+....|+
T Consensus 469 i~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~ 532 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYV 532 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchH
Confidence 99999999999999998764 5678889999999999999999999999999864 5565433333
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.2e-27 Score=253.46 Aligned_cols=421 Identities=10% Similarity=0.020 Sum_probs=199.3
Q ss_pred cchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHHHH
Q 010837 45 ATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIAGY 121 (499)
Q Consensus 45 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~ 121 (499)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+.+.+ .+..++..+...+
T Consensus 465 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 543 (899)
T TIGR02917 465 ASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLY 543 (899)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 3344444444444444444444444444332 22333334444444444444444444444321 2333444444444
Q ss_pred HhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCC
Q 010837 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK 201 (499)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 201 (499)
.+.|++++|...++++.+.+ +.+...+..+...+ ...++.+.+..+++.+.+.. +.+...|..+...+...|+
T Consensus 544 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 616 (899)
T TIGR02917 544 LRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYY-----LGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGD 616 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHH-----HHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCC
Confidence 44444444444444444332 22223333344444 44444445555544444322 3334445555555555555
Q ss_pred hhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CC-ChhhHHHHHHHHhcChhhHHHHHHHHHHH
Q 010837 202 TSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTV--EK-DIVVYNAMIEGYSISIETARKALEVHCQL 275 (499)
Q Consensus 202 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~ 275 (499)
+++|.+.|+.+.+. +...+..+...+.+.|++++|...|+++. .| +..++..+...+... |+.++|..+++.+
T Consensus 617 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~ 695 (899)
T TIGR02917 617 LNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAA-KRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 55555555444321 33344444555555555555555554443 12 233333333333333 4444555555555
Q ss_pred HHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 010837 276 IKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353 (499)
Q Consensus 276 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 353 (499)
.+.+. .+...+..+...+.+.|++++|...|+++.+ |+..++..++.++.+.|++++|.+.++++.+.. +.+...+
T Consensus 696 ~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~ 773 (899)
T TIGR02917 696 QKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLR 773 (899)
T ss_pred HhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 44432 2334444455555555555555555555432 333444445555555555555555555554432 3344455
Q ss_pred HHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhc
Q 010837 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLH 431 (499)
Q Consensus 354 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~ 431 (499)
..+...|...|+.++|...|+++.+. .+.+..++..+...+...|+ ++|+..++++.. +.+..++..+...+...
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEK 850 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 55555555555555555555555521 12244455555555555555 445555555443 22334444555555555
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 432 DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
|++++|.+.++++++.++.. +.++..++.++.+.|++++|.+++++|.
T Consensus 851 g~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 851 GEADRALPLLRKAVNIAPEA-AAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 66666666666666555543 5555555666666666666666555553
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=1.7e-26 Score=244.60 Aligned_cols=423 Identities=13% Similarity=0.088 Sum_probs=324.4
Q ss_pred hHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHHHHHh
Q 010837 47 SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIAGYLK 123 (499)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 123 (499)
....++..+.+.|++++|.++++.+.+.. +.+..++..+...+...|++++|...|+++.+ .+...+..+...+..
T Consensus 433 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 511 (899)
T TIGR02917 433 ADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQ 511 (899)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHH
Confidence 34445556666667777777776666543 45666777777777777888888887776542 345566777777777
Q ss_pred CCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChh
Q 010837 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTS 203 (499)
Q Consensus 124 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 203 (499)
.|++++|.+.|+++.+.+ +.+..++..+...+ ...++.+.+...+..+.+.+ +.+...+..++..|.+.|+++
T Consensus 512 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~-----~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 584 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTID-PKNLRAILALAGLY-----LRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLK 584 (899)
T ss_pred CCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH-----HHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHH
Confidence 888888888888877653 33555666666666 66777788888887776654 455567777888888888888
Q ss_pred HHHHHHHhccC---CChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CC-ChhhHHHHHHHHhcChhhHHHHHHHHHHHHH
Q 010837 204 YARIVFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIFRKTV--EK-DIVVYNAMIEGYSISIETARKALEVHCQLIK 277 (499)
Q Consensus 204 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 277 (499)
+|.++++.+.+ .+...|..+...+...|++++|.+.|+++. .| +...+..+...+... ++.++|...++.+.+
T Consensus 585 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 585 KALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVM-KNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc-CCHHHHHHHHHHHHh
Confidence 88888888754 356778888888888888888888888776 33 344555555555444 778888888888877
Q ss_pred cccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 010837 278 NVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354 (499)
Q Consensus 278 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 354 (499)
... .+...+..++..+...|++++|.++++.+.+ .+...+..+...+...|++++|.+.|+++... .|+..++.
T Consensus 664 ~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 740 (899)
T TIGR02917 664 LKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAI 740 (899)
T ss_pred cCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHH
Confidence 543 3466778888888888888888888888764 35667778888888999999999999998875 45557777
Q ss_pred HHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcC
Q 010837 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHD 432 (499)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 432 (499)
.+..++.+.|++++|.+.++.+.+. .+.+...+..+...|...|++++|.+.|+++.+ +++..+++.+...+...|
T Consensus 741 ~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 741 KLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 8888899999999999999988843 234677888899999999999999999998876 466788899999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 010837 433 DVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 433 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 485 (499)
+ .+|+..++++.+..+.. +.++..++.++...|++++|.+.++++.+.+..
T Consensus 819 ~-~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 819 D-PRALEYAEKALKLAPNI-PAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred c-HHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 9 88999999999988876 788889999999999999999999999987643
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=4e-20 Score=196.96 Aligned_cols=417 Identities=11% Similarity=0.041 Sum_probs=314.6
Q ss_pred HHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC--CCh---HHHHH----------
Q 010837 52 LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ--RTL---SAYNY---------- 116 (499)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~~---------- 116 (499)
...+...|++++|...|++.++.. +.+...+..+..++.+.|++++|+..|++..+ |+. ..|..
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 345667899999999999998875 45778888899999999999999999987763 221 12222
Q ss_pred --HHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHH
Q 010837 117 --MIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVD 194 (499)
Q Consensus 117 --li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 194 (499)
....+.+.|++++|++.|++..+.. +.+...+..+-..+ ...++.+.|...++...+.. +.+...+..+..
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~-----~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~ 427 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVA-----MARKDYAAAERYYQQALRMD-PGNTNAVRGLAN 427 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 2345678899999999999988863 23445555666666 78889999999999988764 344556667777
Q ss_pred HHHhCCChhHHHHHHHhccCCC------------hHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCCh-hhHHHHHHHHh
Q 010837 195 SYVKGGKTSYARIVFDMMLEKN------------VICSTSMISGFMSQGFVEDAEEIFRKTV--EKDI-VVYNAMIEGYS 259 (499)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~-~~~~~ll~~~~ 259 (499)
.|. .++.++|+.+++.+.... ...+..+...+...|++++|.+.|++.. .|+. ..+..+...+.
T Consensus 428 l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 428 LYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR 506 (1157)
T ss_pred HHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 764 467899998888775421 2235556777889999999999999887 4543 34444444454
Q ss_pred cChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC----Ch---------hHHHHHHHHHH
Q 010837 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK----NV---------FTWTSMIDGYG 326 (499)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~---------~~~~~l~~~~~ 326 (499)
.. |+.++|...++.+.+.... +...+..+...+.+.|+.++|...++.+... +. ..+..+...+.
T Consensus 507 ~~-G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 507 QA-GQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred Hc-CCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 44 8899999999998875432 3444445555677889999999999987642 11 11234566788
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHH
Q 010837 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQA 405 (499)
Q Consensus 327 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a 405 (499)
..|+.++|..+++. .+.+...+..+...+.+.|+.++|...|+.+.+ ..| +...+..++..|...|++++|
T Consensus 585 ~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~---~~P~~~~a~~~la~~~~~~g~~~eA 656 (1157)
T PRK11447 585 DSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT---REPGNADARLGLIEVDIAQGDLAAA 656 (1157)
T ss_pred HCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 89999999999872 355666777888999999999999999999994 356 678899999999999999999
Q ss_pred HHHHHhCCC-C-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCC-----chhHHHHHHHHhcCChHHHHHHHHH
Q 010837 406 LKFVLEMPE-K-PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRP-----GAYVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 406 ~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
++.++.... . .+..++..+..++...|++++|.++++++++..+...+ ..+..++..+.+.|++++|.+.+++
T Consensus 657 ~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~ 736 (1157)
T PRK11447 657 RAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKD 736 (1157)
T ss_pred HHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999998876 3 45567777888899999999999999999987655422 3566778999999999999999998
Q ss_pred HH-hCCCccC
Q 010837 479 MK-LRGVLKD 487 (499)
Q Consensus 479 ~~-~~~~~~~ 487 (499)
.. ..|+.|.
T Consensus 737 Al~~~~~~~~ 746 (1157)
T PRK11447 737 AMVASGITPT 746 (1157)
T ss_pred HHhhcCCCCC
Confidence 75 3445443
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=8.2e-21 Score=173.00 Aligned_cols=417 Identities=13% Similarity=0.116 Sum_probs=234.1
Q ss_pred hHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHHHHHh
Q 010837 47 SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIAGYLK 123 (499)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 123 (499)
....+.+-.-+.|++.+|.+.....-+.+ +.+....-.+-..+....+++....--....+ ....+|..+.+.+-.
T Consensus 50 ~~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 50 DRLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKE 128 (966)
T ss_pred hHHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHH
Confidence 35666777778899999988766554443 22222222333344444444444333222222 234466666666666
Q ss_pred CCChhhHHHHHHHHHHcCCCC-ChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchh-HHHHHHHHHHhCCC
Q 010837 124 NGQVEESLSLVRKLVSSGERP-DGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDV-LYTALVDSYVKGGK 201 (499)
Q Consensus 124 ~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~ 201 (499)
.|++++|+.+++.+.+. +| ....|..+-.++ ...++.+.|.+.|.+.++.. |+.. ..+.+....-..|+
T Consensus 129 rg~~~~al~~y~~aiel--~p~fida~inla~al-----~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Gr 199 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIEL--KPKFIDAYINLAAAL-----VTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGR 199 (966)
T ss_pred hchHHHHHHHHHHHHhc--CchhhHHHhhHHHHH-----HhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcc
Confidence 66666666666666664 33 234555555555 66666666666666555432 3333 22233344444566
Q ss_pred hhHHHHHHHhccCC--C-hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCCh---hhHHHHHHHHhcChhhHHHHHHHHHHH
Q 010837 202 TSYARIVFDMMLEK--N-VICSTSMISGFMSQGFVEDAEEIFRKTVEKDI---VVYNAMIEGYSISIETARKALEVHCQL 275 (499)
Q Consensus 202 ~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~ll~~~~~~~~~~~~a~~~~~~~ 275 (499)
+++|...+.+..+. . .+.|+.|...+-.+|+...|+..|++.++-|. ..|-.+-..+. ..+.++.|..-+...
T Consensus 200 l~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~k-e~~~~d~Avs~Y~rA 278 (966)
T KOG4626|consen 200 LEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYK-EARIFDRAVSCYLRA 278 (966)
T ss_pred cchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHH-HHhcchHHHHHHHHH
Confidence 66666655554332 2 34566666666666666666666666653322 23333333332 224555555555444
Q ss_pred HHcccCCC-chhHHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH
Q 010837 276 IKNVFFED-VKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351 (499)
Q Consensus 276 ~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 351 (499)
... .|+ ...+..+...|...|.+|.|+..|++..+ | -...|+.|..++-..|++.+|...|++..... +.-..
T Consensus 279 l~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~had 355 (966)
T KOG4626|consen 279 LNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHAD 355 (966)
T ss_pred Hhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHH
Confidence 432 222 34455555556666666666666666554 2 23456666666666666666666666665531 22334
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHH
Q 010837 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPK-MEHYACMVDLLGRAGSLEQALKFVLEMPE-KPN-SDVWAALLSSC 428 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l~~~~ 428 (499)
..+.|...+...|.+++|..+|.... .+.|. ....+.|...|-.+|++++|+..+++... +|+ ...|+.+...|
T Consensus 356 am~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ 432 (966)
T KOG4626|consen 356 AMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTY 432 (966)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHH
Confidence 55666666666666666666666655 33442 34456666666666666666666666555 343 34666666666
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 429 RLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
-..|+.+.|.+.+.+++..+|.. ..+++.|+.+|...|++.+|++-++...+
T Consensus 433 ke~g~v~~A~q~y~rAI~~nPt~-AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 433 KEMGDVSAAIQCYTRAIQINPTF-AEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred HHhhhHHHHHHHHHHHHhcCcHH-HHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 66666666666666666666666 66666666666666666666666666544
No 11
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=1.5e-20 Score=171.31 Aligned_cols=415 Identities=12% Similarity=0.144 Sum_probs=328.8
Q ss_pred CCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHH
Q 010837 41 NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYM 117 (499)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l 117 (499)
+|.+......+-..+....+.+.....-....+.. +--..+|..+...+-..|++++|+.+++.+.+ ..+..|-.+
T Consensus 78 d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inl 156 (966)
T KOG4626|consen 78 DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINL 156 (966)
T ss_pred CCCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhH
Confidence 33344443333344444445554443333333332 33567889999999999999999999998774 366789999
Q ss_pred HHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 010837 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYV 197 (499)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (499)
..++...|+.+.|...|.+.++. .|+.....+-+..+. ...|..++|..-+...++.. +-=...|+.|...+.
T Consensus 157 a~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLl----ka~Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~ 229 (966)
T KOG4626|consen 157 AAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLL----KAEGRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFN 229 (966)
T ss_pred HHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHH----HhhcccchhHHHHHHHHhhC-CceeeeehhcchHHh
Confidence 99999999999999999998874 676655444333332 55677888888887776643 223457888999999
Q ss_pred hCCChhHHHHHHHhccCCC---hHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCChhhHHHHHHHHhcChhhHHHHHHHH
Q 010837 198 KGGKTSYARIVFDMMLEKN---VICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIVVYNAMIEGYSISIETARKALEVH 272 (499)
Q Consensus 198 ~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~ 272 (499)
..|+...|+.-|++..+-| ...|..|...|-..+.+++|...|.+.. .|+......-+.......|..|.|+.-+
T Consensus 230 ~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Y 309 (966)
T KOG4626|consen 230 AQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTY 309 (966)
T ss_pred hcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHH
Confidence 9999999999999987654 4688999999999999999999998876 5655433333334445569999999999
Q ss_pred HHHHHcccCCC-chhHHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 010837 273 CQLIKNVFFED-VKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348 (499)
Q Consensus 273 ~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 348 (499)
++.++.. |+ +..|+.|..++-..|++.+|.+.|++... | ...+.+.|...|...|.+++|..+|....+ +.|
T Consensus 310 kral~~~--P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p 385 (966)
T KOG4626|consen 310 KRALELQ--PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFP 385 (966)
T ss_pred HHHHhcC--CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hCh
Confidence 9998864 44 56899999999999999999999999875 3 567888999999999999999999999887 556
Q ss_pred CH-HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHH
Q 010837 349 NY-VTFLGALSACGHAGLVDKGREIFESMERDYSMKPK-MEHYACMVDLLGRAGSLEQALKFVLEMPE-KPN-SDVWAAL 424 (499)
Q Consensus 349 ~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l 424 (499)
.- ..++.|...|-++|++++|...|++.. .++|+ ...|+.+...|-..|+.+.|++.+.+... +|. ...++.|
T Consensus 386 ~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNL 462 (966)
T KOG4626|consen 386 EFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNL 462 (966)
T ss_pred hhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhH
Confidence 54 578899999999999999999999998 78885 66899999999999999999999998887 454 5788999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHH
Q 010837 425 LSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471 (499)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 471 (499)
...|..+|+..+|++-++..++..|+. +.+|..++.++.-..+|.+
T Consensus 463 asi~kDsGni~~AI~sY~~aLklkPDf-pdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 463 ASIYKDSGNIPEAIQSYRTALKLKPDF-PDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HHHhhccCCcHHHHHHHHHHHccCCCC-chhhhHHHHHHHHHhcccc
Confidence 999999999999999999999999999 8999998887765554433
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.89 E-value=8e-19 Score=187.07 Aligned_cols=92 Identities=9% Similarity=0.090 Sum_probs=68.0
Q ss_pred HHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHH-HHHHHcCCChhHHHHHhccCCC--C-ChHHHHHHHHHHHh
Q 010837 48 LPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKL-LILHLKCGALKYAGQMFDELPQ--R-TLSAYNYMIAGYLK 123 (499)
Q Consensus 48 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~ 123 (499)
...+.+.+...|++++|.+.|+.+.+.+ +|+....... .......|+.++|++.|+++.+ | +...+..+...+..
T Consensus 115 ~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~ 193 (1157)
T PRK11447 115 ALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFS 193 (1157)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHc
Confidence 3455567788999999999999998764 4443321112 2223345899999999999874 3 55678888899999
Q ss_pred CCChhhHHHHHHHHHHc
Q 010837 124 NGQVEESLSLVRKLVSS 140 (499)
Q Consensus 124 ~g~~~~a~~~~~~m~~~ 140 (499)
.|+.++|++.|+++.+.
T Consensus 194 ~g~~~eAl~~l~~~~~~ 210 (1157)
T PRK11447 194 SGRRDEGFAVLEQMAKS 210 (1157)
T ss_pred cCCHHHHHHHHHHHhhC
Confidence 99999999999998653
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.88 E-value=1.9e-18 Score=173.07 Aligned_cols=414 Identities=12% Similarity=0.010 Sum_probs=263.9
Q ss_pred HHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHHHHHhC
Q 010837 48 LPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIAGYLKN 124 (499)
Q Consensus 48 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 124 (499)
+......+...|+++.|...|++.++. .|+...|..+..+|.+.|++++|+..++...+ .+..+|..+..+|...
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l 207 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL 207 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 445567778899999999999998875 47788899999999999999999999998764 3566899999999999
Q ss_pred CChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhH
Q 010837 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSY 204 (499)
Q Consensus 125 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 204 (499)
|++++|+.-|......+-..+.. ...++... .. ..+........+.. +++...+..+.. |........
T Consensus 208 g~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~-----l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~ 275 (615)
T TIGR00990 208 GKYADALLDLTASCIIDGFRNEQ-SAQAVERL-----LK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKP 275 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCccHH-HHHHHHHH-----HH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCc
Confidence 99999999887765542111111 11111111 00 11111122222211 222222222222 222111111
Q ss_pred HHHHHHhccCCCh---HhHHHHHHH---HHhCCCHHHHHHHHHhcCC-----CCh-hhHHHHHHHHhcChhhHHHHHHHH
Q 010837 205 ARIVFDMMLEKNV---ICSTSMISG---FMSQGFVEDAEEIFRKTVE-----KDI-VVYNAMIEGYSISIETARKALEVH 272 (499)
Q Consensus 205 A~~~~~~~~~~~~---~~~~~l~~~---~~~~g~~~~a~~~~~~~~~-----~~~-~~~~~ll~~~~~~~~~~~~a~~~~ 272 (499)
...-++...+.+. ..+..+... ....+++++|.+.|++..+ |+. ..+..+...+ ...|+.++|...+
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~-~~~g~~~eA~~~~ 354 (615)
T TIGR00990 276 RPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFK-CLKGKHLEALADL 354 (615)
T ss_pred chhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHH-HHcCCHHHHHHHH
Confidence 2111221111111 111111111 1234677788888877663 222 2233333333 3347777888888
Q ss_pred HHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 010837 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349 (499)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 349 (499)
+..++... .....|..+...+...|++++|...|+++.+ .+...|..+...+...|++++|...|++..+.. +.+
T Consensus 355 ~kal~l~P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~ 432 (615)
T TIGR00990 355 SKSIELDP-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDF 432 (615)
T ss_pred HHHHHcCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccC
Confidence 87776532 1344666777778888888888888887654 356778888888888888888888888887753 334
Q ss_pred HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCH-H-------
Q 010837 350 YVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNS-D------- 419 (499)
Q Consensus 350 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~-~------- 419 (499)
...+..+..++.+.|++++|...|++... ..| +...++.+...+...|++++|++.|++... .|+. .
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~---~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~ 509 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKK---NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLP 509 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHH
Confidence 56677777788888888888888888873 234 567778888888888888888888887665 2221 1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
.++..+..+...|++++|.++++++++.++.. ...+..++.++.+.|++++|.+.+++..+.
T Consensus 510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~-~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 510 LINKALALFQWKQDFIEAENLCEKALIIDPEC-DIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 11112222334588888888888888887766 667888888888888888888888887654
No 14
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=7.5e-20 Score=174.07 Aligned_cols=289 Identities=15% Similarity=0.124 Sum_probs=217.1
Q ss_pred HHHHHhCCChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCC-C------hhhHHHHHHHHhcCh
Q 010837 193 VDSYVKGGKTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTVEK-D------IVVYNAMIEGYSISI 262 (499)
Q Consensus 193 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~------~~~~~~ll~~~~~~~ 262 (499)
...+...|++++|...|+++.+. +..++..+...+...|++++|..+++.+... + ...+..+...+...
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~- 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA- 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC-
Confidence 33456678888888888887653 4456777778888888888888888777632 1 12344555555544
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCC--------hhHHHHHHHHHHhCCChhHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKN--------VFTWTSMIDGYGKNGNPNQA 334 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~a 334 (499)
|+.++|..+++.+.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+ ...+..+...+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 77778888888887653 2356677888888888999999988888876421 12355677778888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 010837 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK--MEHYACMVDLLGRAGSLEQALKFVLEM 412 (499)
Q Consensus 335 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 412 (499)
...|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. .|+ ..++..++.+|.+.|++++|.+.++++
T Consensus 200 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 200 RALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988753 334567777888888999999999999998833 343 456788888999999999999999887
Q ss_pred CC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh---cCChHHHHHHHHHHHhCCCccCc
Q 010837 413 PE-KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA---AGKWDSVTELREKMKLRGVLKDT 488 (499)
Q Consensus 413 ~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~ 488 (499)
.+ .|+...+..++..+.+.|++++|..+++++.+..|+. ..+..++..+.. .|+.+++..++++|.+.++.|+|
T Consensus 276 ~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~--~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 276 LEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSL--RGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCH--HHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 76 5777777888888999999999999999988876544 567666666554 45888999999999988888887
Q ss_pred c
Q 010837 489 G 489 (499)
Q Consensus 489 ~ 489 (499)
.
T Consensus 354 ~ 354 (389)
T PRK11788 354 R 354 (389)
T ss_pred C
Confidence 5
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=1.3e-19 Score=172.46 Aligned_cols=296 Identities=13% Similarity=0.056 Sum_probs=200.3
Q ss_pred HHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCc---hhHHHHHHH
Q 010837 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD---DVLYTALVD 194 (499)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 194 (499)
...+...|++++|+..|+++.+.+ +.+..++..+...+ ...++.+.|..+++.+.+.+..++ ...+..++.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~-----~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLF-----RRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHH-----HHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 334566777777777777777642 12223444444444 455555555555555544321111 123444555
Q ss_pred HHHhCCChhHHHHHHHhccC---CChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHH
Q 010837 195 SYVKGGKTSYARIVFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEV 271 (499)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~ 271 (499)
.|.+.|++++|.++|+++.+ .+..++..++..+.+.|++++|.+.+
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------------------------------- 164 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVA------------------------------- 164 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHH-------------------------------
Confidence 55555555555555555543 13344445555555555555555544
Q ss_pred HHHHHHcccCCC----chhHHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 010837 272 HCQLIKNVFFED----VKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344 (499)
Q Consensus 272 ~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (499)
+.+.+.+..+. ...+..+...+.+.|++++|...|+++.+ | +...+..+...+.+.|++++|.++++++.+.
T Consensus 165 -~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 243 (389)
T PRK11788 165 -ERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQ 243 (389)
T ss_pred -HHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 44444332221 12345577778899999999999999864 2 4567788889999999999999999999875
Q ss_pred CCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHH
Q 010837 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDVWAA 423 (499)
Q Consensus 345 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~ 423 (499)
+......++..+..+|...|++++|...++++.+ ..|+...+..++..+.+.|++++|.++++++.+ .|+..+++.
T Consensus 244 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~---~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~ 320 (389)
T PRK11788 244 DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE---EYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHR 320 (389)
T ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 4322346788899999999999999999999983 357767778899999999999999999998776 599999998
Q ss_pred HHHHHhh---cCCHHHHHHHHHHHHhcCCCCCCc
Q 010837 424 LLSSCRL---HDDVEMANIAANEIFKLNANDRPG 454 (499)
Q Consensus 424 l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~ 454 (499)
++..+.. .|+.+++..+++++.+.++.+++.
T Consensus 321 l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 321 LLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 8887764 568999999999999876666444
No 16
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=8.4e-18 Score=171.44 Aligned_cols=407 Identities=11% Similarity=-0.013 Sum_probs=239.6
Q ss_pred CCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC---CCChHHHHHH
Q 010837 41 NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP---QRTLSAYNYM 117 (499)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l 117 (499)
.+.++.-..-.+......|+.++|++++....... +.+...+..+..++.+.|++++|..+|++.. +.+...+..+
T Consensus 11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~l 89 (765)
T PRK10049 11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGL 89 (765)
T ss_pred cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 35566666667777778888888888888777633 4455567778888888888888888888743 3456667777
Q ss_pred HHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHH
Q 010837 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYV 197 (499)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 197 (499)
...+...|++++|+..+++..+. .|+...+..+-.++ ...++.+.|...++.+.+.. +.+...+..+...+.
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l-----~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~ 161 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSG--APDKANLLALAYVY-----KRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALR 161 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH-----HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 77788888888888888887765 33322243443344 44455555555555555443 223333344444555
Q ss_pred hCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHh-c---Chhh---HHHHHH
Q 010837 198 KGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS-I---SIET---ARKALE 270 (499)
Q Consensus 198 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~-~---~~~~---~~~a~~ 270 (499)
..|+.++|++.++.... +......+ . .......+.... . ..+. .++|++
T Consensus 162 ~~~~~e~Al~~l~~~~~-~p~~~~~l--------~---------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~ 217 (765)
T PRK10049 162 NNRLSAPALGAIDDANL-TPAEKRDL--------E---------------ADAAAELVRLSFMPTRSEKERYAIADRALA 217 (765)
T ss_pred HCCChHHHHHHHHhCCC-CHHHHHHH--------H---------------HHHHHHHHHhhcccccChhHHHHHHHHHHH
Confidence 55555555555554443 11000000 0 000011111110 0 0011 245666
Q ss_pred HHHHHHHc-ccCCCch-hHH----HHHHHHHhcCChHHHHHHHHhcCCCC---h-hHHHHHHHHHHhCCChhHHHHHHHH
Q 010837 271 VHCQLIKN-VFFEDVK-LGS----ALVDMYAKCGKIDDARRVFDHMQQKN---V-FTWTSMIDGYGKNGNPNQALELFCM 340 (499)
Q Consensus 271 ~~~~~~~~-~~~~~~~-~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~---~-~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (499)
.++.+.+. ...|+.. .+. ..+.++...|++++|+..|+++.+.+ + .....+..+|...|++++|+.+|++
T Consensus 218 ~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~ 297 (765)
T PRK10049 218 QYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTE 297 (765)
T ss_pred HHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 66666543 1222221 110 01223455677777887777776531 1 1122245677777888888888777
Q ss_pred HHHcCCCC---CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcC----------CCCC---hhHHHHHHHHHHhcCCHHH
Q 010837 341 MQECCVQP---NYVTFLGALSACGHAGLVDKGREIFESMERDYS----------MKPK---MEHYACMVDLLGRAGSLEQ 404 (499)
Q Consensus 341 m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~~~~~~~~~~ 404 (499)
+.+..... .......+..++...|++++|.++++.+..... -.|+ ...+..+...+...|+.++
T Consensus 298 ~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~e 377 (765)
T PRK10049 298 LFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQ 377 (765)
T ss_pred HhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHH
Confidence 76532111 123445555667777888888877777763210 0122 1234556667777788888
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 405 ALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 405 a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
|++.++++.. +.+...+..+...+...|++++|++.++++++..|.. ...+...+..+.+.|++++|.++++++.+
T Consensus 378 A~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~-~~l~~~~a~~al~~~~~~~A~~~~~~ll~ 455 (765)
T PRK10049 378 AEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN-INLEVEQAWTALDLQEWRQMDVLTDDVVA 455 (765)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8888877665 3456677777777777888888888888888777766 66777777777788888888888877765
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.86 E-value=8.1e-18 Score=167.98 Aligned_cols=354 Identities=11% Similarity=0.021 Sum_probs=249.1
Q ss_pred cCCChhHHHHHhccCCCC------ChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcC
Q 010837 92 KCGALKYAGQMFDELPQR------TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL 165 (499)
Q Consensus 92 ~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~ 165 (499)
+..+++..--+|..-++. +......++..+.+.|++++|+.+++........+....+. +..+. ...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~-l~~~~-----l~~g 90 (656)
T PRK15174 17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRR-WVISP-----LASS 90 (656)
T ss_pred hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHH-HhhhH-----hhcC
Confidence 344555444444444321 12223445566677777777777777776653333222333 33333 5577
Q ss_pred cchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccC--C-ChHhHHHHHHHHHhCCCHHHHHHHHHh
Q 010837 166 PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLE--K-NVICSTSMISGFMSQGFVEDAEEIFRK 242 (499)
Q Consensus 166 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 242 (499)
+.+.|...++.+.+.. +.+...+..+...+...|++++|+..+++..+ | +...+..+...+...|++++|...+++
T Consensus 91 ~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~ 169 (656)
T PRK15174 91 QPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLART 169 (656)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 7777777777777654 44555677778888888888888888888755 2 566788888888888998888888877
Q ss_pred cC--CCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhH
Q 010837 243 TV--EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFT 317 (499)
Q Consensus 243 ~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~ 317 (499)
+. .|+.......+..+... |+.++|...++.+.+....++......+..++.+.|++++|...|+++.+ .+...
T Consensus 170 ~~~~~P~~~~a~~~~~~l~~~-g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~ 248 (656)
T PRK15174 170 QAQEVPPRGDMIATCLSFLNK-SRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAAL 248 (656)
T ss_pred HHHhCCCCHHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH
Confidence 64 34333222222234333 78888888888887765444455555667788899999999999988765 35667
Q ss_pred HHHHHHHHHhCCChhH----HHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHH
Q 010837 318 WTSMIDGYGKNGNPNQ----ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACM 392 (499)
Q Consensus 318 ~~~l~~~~~~~g~~~~----a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l 392 (499)
+..+...+...|++++ |...|++..+.. +.+...+..+...+...|++++|...+++..+ ..| +...+..+
T Consensus 249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~---l~P~~~~a~~~L 324 (656)
T PRK15174 249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLA---THPDLPYVRAMY 324 (656)
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCCCCHHHHHHH
Confidence 8888889999999885 788999888753 34566788888899999999999999999883 345 56677788
Q ss_pred HHHHHhcCCHHHHHHHHHhCCC-CCCHH-HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhH
Q 010837 393 VDLLGRAGSLEQALKFVLEMPE-KPNSD-VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457 (499)
Q Consensus 393 ~~~~~~~~~~~~a~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 457 (499)
..+|.+.|++++|++.|+++.. .|+.. .+..+..++...|+.++|...|+++.+..|+..+..|.
T Consensus 325 a~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~ 391 (656)
T PRK15174 325 ARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFE 391 (656)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHH
Confidence 8899999999999999988875 45543 34445677888999999999999999888775344443
No 18
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.86 E-value=5e-17 Score=166.04 Aligned_cols=189 Identities=10% Similarity=-0.015 Sum_probs=142.4
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHH
Q 010837 290 LVDMYAKCGKIDDARRVFDHMQQ--KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367 (499)
Q Consensus 290 l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 367 (499)
+...+...|++++|...|+++.. ++...+..+..++.+.|+.++|...+++..+.. +.+...+..+.......|+++
T Consensus 515 lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 515 VAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHH
Confidence 34444567777777777776553 334445566667777888888888888877653 223333333444455668888
Q ss_pred HHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010837 368 KGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIF 445 (499)
Q Consensus 368 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (499)
+|...+++.. .+.|+...|..+..++.+.|++++|+..+++... +.+...+..+..++...|++++|++.+++++
T Consensus 594 eAl~~~~~AL---~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 594 LALNDLTRSL---NIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHH---HhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8888888888 4467777888888888999999999999988877 3456677888888888999999999999999
Q ss_pred hcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 446 KLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 446 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+..|.. +..+..++.++...|++++|...+++..+..
T Consensus 671 ~l~P~~-~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 671 KGLPDD-PALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 988877 8889999999999999999999999887643
No 19
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.83 E-value=6.2e-16 Score=154.97 Aligned_cols=421 Identities=11% Similarity=0.040 Sum_probs=313.0
Q ss_pred HHHHHHhhhCCCChhhHHHHHHHHHHhCCCCCh--HHHHHHHHHHHcCCChhHHHHHhccCCCCChHH-HHHH--HHHHH
Q 010837 48 LPSALQHYINSDTPFYGLKIHAHITKTGVKPNT--NISIKLLILHLKCGALKYAGQMFDELPQRTLSA-YNYM--IAGYL 122 (499)
Q Consensus 48 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~l--i~~~~ 122 (499)
|...+ ...+.|+++.|++.|++..+.. |+. .++ .++..+...|+.++|+..+++...|+... +..+ ...+.
T Consensus 38 y~~ai-i~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~ 113 (822)
T PRK14574 38 YDSLI-IRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR 113 (822)
T ss_pred HHHHH-HHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 44444 4568999999999999999875 432 344 88889999999999999999998764443 3333 45788
Q ss_pred hCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCh
Q 010837 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKT 202 (499)
Q Consensus 123 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 202 (499)
..|++++|+++|+++.+.. +-+...+..+...+ ...++.+.|...++.+.+. .|+...+..++..+...++.
T Consensus 114 ~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y-----~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~ 185 (822)
T PRK14574 114 NEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQ-----ADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRN 185 (822)
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH-----hhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchH
Confidence 8899999999999999873 22344555556666 7778889999998888765 46666665565556556777
Q ss_pred hHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcCC---CCh------hhHHHHHHHHh-cC---h---h
Q 010837 203 SYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTVE---KDI------VVYNAMIEGYS-IS---I---E 263 (499)
Q Consensus 203 ~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~------~~~~~ll~~~~-~~---~---~ 263 (499)
.+|++.++++.+. +...+..+..++.+.|-...|+++.++-.. +.. ......++.-. .. . .
T Consensus 186 ~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 186 YDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 6799999999653 577888899999999999999999887541 111 01111111110 00 0 1
Q ss_pred hHHHHHHHHHHHHHc-ccCCCc-hhH-H---HHHHHHHhcCChHHHHHHHHhcCCC----ChhHHHHHHHHHHhCCChhH
Q 010837 264 TARKALEVHCQLIKN-VFFEDV-KLG-S---ALVDMYAKCGKIDDARRVFDHMQQK----NVFTWTSMIDGYGKNGNPNQ 333 (499)
Q Consensus 264 ~~~~a~~~~~~~~~~-~~~~~~-~~~-~---~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~ 333 (499)
..+.++.-++.+... +..|.. ..| . -.+-++...|+..++++.|+.+..+ ...+-..+.++|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 334556666665552 222322 122 2 2345678889999999999999853 34567788999999999999
Q ss_pred HHHHHHHHHHcC-----CCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcC----------CCCC---hhHHHHHHHH
Q 010837 334 ALELFCMMQECC-----VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS----------MKPK---MEHYACMVDL 395 (499)
Q Consensus 334 a~~~~~~m~~~~-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~p~---~~~~~~l~~~ 395 (499)
|..+|+.+.... ..++......|.-++...+++++|..+++.+..... -.|+ ...+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 999999986643 123444467889999999999999999999985211 0122 2234556777
Q ss_pred HHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHH
Q 010837 396 LGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473 (499)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 473 (499)
+...|+..+|++.++++.. +-|......+...+...|.+.+|++.++.+....|.. ..+....+..+...|++.+|.
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~-~~~~~~~~~~al~l~e~~~A~ 504 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRS-LILERAQAETAMALQEWHQME 504 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCcc-HHHHHHHHHHHHhhhhHHHHH
Confidence 8899999999999999977 5688899999999999999999999999998898887 889999999999999999999
Q ss_pred HHHHHHHh
Q 010837 474 ELREKMKL 481 (499)
Q Consensus 474 ~~~~~~~~ 481 (499)
.+.+.+.+
T Consensus 505 ~~~~~l~~ 512 (822)
T PRK14574 505 LLTDDVIS 512 (822)
T ss_pred HHHHHHHh
Confidence 99887755
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.83 E-value=3.8e-17 Score=163.20 Aligned_cols=348 Identities=10% Similarity=-0.015 Sum_probs=265.7
Q ss_pred HhCCChhhHHHHHHHHHHc--CCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhC
Q 010837 122 LKNGQVEESLSLVRKLVSS--GERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKG 199 (499)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (499)
.++.+|+...-.|..-.++ .-.-+..-...++..+ ...|+.+.|..++...+..... +......++..+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~ 89 (656)
T PRK15174 16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIAC-----LRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLAS 89 (656)
T ss_pred hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHH-----HhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhc
Confidence 3455555554444443322 0111222333444555 7888999999999988876533 344555566777789
Q ss_pred CChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCCh-hhHHHHHHHHhcChhhHHHHHHHHH
Q 010837 200 GKTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTV--EKDI-VVYNAMIEGYSISIETARKALEVHC 273 (499)
Q Consensus 200 g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~-~~~~~ll~~~~~~~~~~~~a~~~~~ 273 (499)
|++++|.+.|+++.+. +...+..+...+...|++++|.+.|++.. .|+. ..+..+...+... |+.++|...++
T Consensus 90 g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~-g~~~eA~~~~~ 168 (656)
T PRK15174 90 SQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLM-DKELQAISLAR 168 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-CChHHHHHHHH
Confidence 9999999999999653 56788889999999999999999999987 4554 4455555555444 89999999999
Q ss_pred HHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC----ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 010837 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK----NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349 (499)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 349 (499)
.+......+.. .+..+ ..+.+.|++++|...++.+.+. +...+..+..++...|++++|+..++++.+.. +.+
T Consensus 169 ~~~~~~P~~~~-a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~ 245 (656)
T PRK15174 169 TQAQEVPPRGD-MIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDG 245 (656)
T ss_pred HHHHhCCCCHH-HHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCC
Confidence 88776544333 33333 3478899999999999987653 23344556778889999999999999998864 445
Q ss_pred HHHHHHHHHHHcccCcHHH----HHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHH
Q 010837 350 YVTFLGALSACGHAGLVDK----GREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWA 422 (499)
Q Consensus 350 ~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~ 422 (499)
...+..+..++...|++++ |...++++. ...| +...+..+...+.+.|++++|+..+++... +.+...+.
T Consensus 246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al---~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~ 322 (656)
T PRK15174 246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHAL---QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRA 322 (656)
T ss_pred HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 6778888899999999986 899999998 3456 677899999999999999999999999887 34466788
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
.+..++.+.|++++|...++++.+.+|.. ...+..++.++...|++++|...+++..+..
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~~P~~-~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLAREKGVT-SKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCccc-hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 88899999999999999999999988876 5556667888999999999999999987653
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=3.7e-16 Score=159.77 Aligned_cols=430 Identities=9% Similarity=-0.035 Sum_probs=299.4
Q ss_pred CcchHHHH-HHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHc-CCChhHHHHHhccCCCCChHHHHHHHHHH
Q 010837 44 TATSLPSA-LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLK-CGALKYAGQMFDELPQRTLSAYNYMIAGY 121 (499)
Q Consensus 44 ~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 121 (499)
.+...... .+.+...+++++|.+++.++.+.+ +.+......|..+|.. .++ +++..+++...+.++..+..+...|
T Consensus 180 ~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~y 257 (987)
T PRK09782 180 EGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATAL 257 (987)
T ss_pred CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHH
Confidence 34445555 889999999999999999999997 4566667778788887 477 8898887765567888999999999
Q ss_pred HhCCChhhHHHHHHHHHHcCCC-CChhhHHHHhhhcccc------------------------------c----------
Q 010837 122 LKNGQVEESLSLVRKLVSSGER-PDGYTFSMILKASTCC------------------------------R---------- 160 (499)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~------------------------------~---------- 160 (499)
.+.|+.++|.++++++...-.. |+..++.-++.-.... +
T Consensus 258 i~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 337 (987)
T PRK09782 258 AYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA 337 (987)
T ss_pred HHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc
Confidence 9999999999999998654222 3333333332211100 0
Q ss_pred --------------c----------------------------------CCcCcchhHHHHHHHHHHc-C-CCCchhHHH
Q 010837 161 --------------S----------------------------------NVPLPRNLGRMVHAQILKC-D-VKADDVLYT 190 (499)
Q Consensus 161 --------------~----------------------------------~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~ 190 (499)
. ...|+.++|..+++..... + -.++...-+
T Consensus 338 ~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 417 (987)
T PRK09782 338 TLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMA 417 (987)
T ss_pred CCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHH
Confidence 0 0111111222222222110 0 011222233
Q ss_pred HHHHHHHhCCC---hhHHHHH-------------------------HHhccC---C--ChHhHHHHHHHHHhCCCHHHHH
Q 010837 191 ALVDSYVKGGK---TSYARIV-------------------------FDMMLE---K--NVICSTSMISGFMSQGFVEDAE 237 (499)
Q Consensus 191 ~l~~~~~~~g~---~~~A~~~-------------------------~~~~~~---~--~~~~~~~l~~~~~~~g~~~~a~ 237 (499)
-++..|.+.+. ..++..+ +..... . +...|..+..++.. ++.++|.
T Consensus 418 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi 496 (987)
T PRK09782 418 RLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVAL 496 (987)
T ss_pred HHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHH
Confidence 44555555444 1122111 001111 1 33445555555555 6777788
Q ss_pred HHHHhcC--CCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCCh
Q 010837 238 EIFRKTV--EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315 (499)
Q Consensus 238 ~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 315 (499)
..+.+.. .|+......+...+ ...|+.++|...++.+... .|+...+..+..++.+.|++++|...+++..+.++
T Consensus 497 ~a~~~Al~~~Pd~~~~L~lA~al-~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P 573 (987)
T PRK09782 497 YAWLQAEQRQPDAWQHRAVAYQA-YQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL 573 (987)
T ss_pred HHHHHHHHhCCchHHHHHHHHHH-HHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 8666655 45533222222222 2348899999999987554 34444566677889999999999999998876433
Q ss_pred hHHH---HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHH
Q 010837 316 FTWT---SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYAC 391 (499)
Q Consensus 316 ~~~~---~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 391 (499)
...+ .+.......|++++|...+++..+. .|+...+..+..++.+.|+.++|...+++.. ...| +...+..
T Consensus 574 ~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL---~l~Pd~~~a~~n 648 (987)
T PRK09782 574 GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAAL---ELEPNNSNYQAA 648 (987)
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHH
Confidence 3333 3333444569999999999999884 5778889999999999999999999999998 4467 6778888
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCCh
Q 010837 392 MVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKW 469 (499)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 469 (499)
+..++...|++++|++.+++..+ +.+...+..+..++...|++++|+..++++++..|.. ..+.........+..++
T Consensus 649 LG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~-a~i~~~~g~~~~~~~~~ 727 (987)
T PRK09782 649 LGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ-ALITPLTPEQNQQRFNF 727 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC-chhhhhhhHHHHHHHHH
Confidence 99999999999999999999877 3467789999999999999999999999999999988 88889999999999999
Q ss_pred HHHHHHHHHHHhCCCc
Q 010837 470 DSVTELREKMKLRGVL 485 (499)
Q Consensus 470 ~~A~~~~~~~~~~~~~ 485 (499)
+.|.+-+++-...++.
T Consensus 728 ~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 728 RRLHEEVGRRWTFSFD 743 (987)
T ss_pred HHHHHHHHHHhhcCcc
Confidence 9999988887664433
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=4.1e-16 Score=156.32 Aligned_cols=392 Identities=10% Similarity=-0.026 Sum_probs=243.0
Q ss_pred HHHHHHHcCCChhHHHHHhccCC--CCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCC-hhhHHHHhhhcccccc
Q 010837 85 KLLILHLKCGALKYAGQMFDELP--QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD-GYTFSMILKASTCCRS 161 (499)
Q Consensus 85 ~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~ 161 (499)
.....+.+.|++++|+..|++.. .|+...|..+..+|.+.|++++|++.++..++. .|+ ...+..+-.++
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~----- 204 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAY----- 204 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHH-----
Confidence 44455556666666666666544 245555666666666666666666666666553 232 33444444455
Q ss_pred CCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHH
Q 010837 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241 (499)
Q Consensus 162 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 241 (499)
...++++.|...+......+-..+. ....++..+........+...++.-.. +...+..+.. +......+....-+.
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~a~~~~~~~l~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLKKFAESKAKEILETKPE-NLPSVTFVGN-YLQSFRPKPRPAGLE 281 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCCHHHHHH-HHHHccCCcchhhhh
Confidence 5555555555555443332211111 111111111111111222222222111 1112221111 111111111111111
Q ss_pred hcCC--CCh-hhHHHH--HHHHhcChhhHHHHHHHHHHHHHcc-cCC-CchhHHHHHHHHHhcCChHHHHHHHHhcCC--
Q 010837 242 KTVE--KDI-VVYNAM--IEGYSISIETARKALEVHCQLIKNV-FFE-DVKLGSALVDMYAKCGKIDDARRVFDHMQQ-- 312 (499)
Q Consensus 242 ~~~~--~~~-~~~~~l--l~~~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 312 (499)
...+ +.. ..+..+ ...-.+..+.+++|...++...+.+ ..| ....+..+...+...|++++|...|++..+
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 1111 110 011111 0011133467889999999998875 223 345778888899999999999999999875
Q ss_pred C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHH
Q 010837 313 K-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYA 390 (499)
Q Consensus 313 ~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~ 390 (499)
| +...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...|++.. .+.| +...+.
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal---~l~P~~~~~~~ 437 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSI---DLDPDFIFSHI 437 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HcCccCHHHHH
Confidence 3 35578888899999999999999999998763 4457788889999999999999999999998 4456 577788
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchh------HHHHHH
Q 010837 391 CMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAY------VALSNT 462 (499)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~ 462 (499)
.+..++.+.|++++|+..|++... +.+...++.+...+...|++++|++.|+++++..+....... ......
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 899999999999999999998876 345788999999999999999999999999998876422211 122233
Q ss_pred HHhcCChHHHHHHHHHHHhCCCccCccccc
Q 010837 463 LAAAGKWDSVTELREKMKLRGVLKDTGCSW 492 (499)
Q Consensus 463 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 492 (499)
+...|++++|.+++++..+.+ |+....|
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~--p~~~~a~ 545 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIID--PECDIAV 545 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcC--CCcHHHH
Confidence 445799999999999987754 4443333
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.79 E-value=2.4e-15 Score=153.65 Aligned_cols=368 Identities=10% Similarity=-0.003 Sum_probs=249.5
Q ss_pred CCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHH
Q 010837 41 NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYM 117 (499)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l 117 (499)
.+.+...+..+...+...|++++|.+++++.++.. +.+...+..+...+.+.|++++|...++++.+ .+.. +..+
T Consensus 45 ~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~l 122 (765)
T PRK10049 45 MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLAL 122 (765)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHH
Confidence 34555568899999999999999999999999875 55677788888999999999999999998763 3555 8888
Q ss_pred HHHHHhCCChhhHHHHHHHHHHcCCCCChh-hHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCch------hHHH
Q 010837 118 IAGYLKNGQVEESLSLVRKLVSSGERPDGY-TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADD------VLYT 190 (499)
Q Consensus 118 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~ 190 (499)
...+...|+.++|+..++++.+. .|+.. .+..+..++ ...+..+.|...++.... .|+. ....
T Consensus 123 a~~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l-----~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~ 192 (765)
T PRK10049 123 AYVYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQAL-----RNNRLSAPALGAIDDANL---TPAEKRDLEADAAA 192 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH-----HHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHH
Confidence 88999999999999999999986 55543 334444444 555666777776665432 2321 0111
Q ss_pred HHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCH---HHHHHHHHhcC-----CCChh-hHH----HHHHH
Q 010837 191 ALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFV---EDAEEIFRKTV-----EKDIV-VYN----AMIEG 257 (499)
Q Consensus 191 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~-----~~~~~-~~~----~ll~~ 257 (499)
.++......+ ....+++ ++|++.++.+. .|+.. .+. ..+..
T Consensus 193 ~~~r~~~~~~--------------------------~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~ 246 (765)
T PRK10049 193 ELVRLSFMPT--------------------------RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA 246 (765)
T ss_pred HHHHhhcccc--------------------------cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH
Confidence 1111111000 0111112 33444444333 11111 000 01222
Q ss_pred HhcChhhHHHHHHHHHHHHHcccC-CCchhHHHHHHHHHhcCChHHHHHHHHhcCCCC-------hhHHHHHHHHHHhCC
Q 010837 258 YSISIETARKALEVHCQLIKNVFF-EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKN-------VFTWTSMIDGYGKNG 329 (499)
Q Consensus 258 ~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~g 329 (499)
+... ++.++|...|+.+.+.+.. |+. ....+..+|...|++++|+..|+++.+.+ ......+..++...|
T Consensus 247 Ll~~-g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g 324 (765)
T PRK10049 247 LLAR-DRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESE 324 (765)
T ss_pred HHHh-hhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcc
Confidence 2222 5566677777776665432 221 12224667888888888888888875422 234555666778888
Q ss_pred ChhHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHH
Q 010837 330 NPNQALELFCMMQECC-----------VQPNY---VTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVD 394 (499)
Q Consensus 330 ~~~~a~~~~~~m~~~~-----------~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 394 (499)
++++|..+++++.+.. -.|+. ..+..+...+...|+.++|++.++++... .| +...+..+..
T Consensus 325 ~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~---~P~n~~l~~~lA~ 401 (765)
T PRK10049 325 NYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN---APGNQGLRIDYAS 401 (765)
T ss_pred cHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHH
Confidence 9999998888887642 11232 24556677888899999999999998833 45 6778888999
Q ss_pred HHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 395 LLGRAGSLEQALKFVLEMPE-KPN-SDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.+...|++++|++.++++.. .|+ ...+..++..+...|++++|+.+++++++..|+.
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~ 460 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQD 460 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCC
Confidence 99999999999999998887 454 5677777778889999999999999999988877
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.79 E-value=1.1e-14 Score=127.73 Aligned_cols=301 Identities=16% Similarity=0.150 Sum_probs=203.8
Q ss_pred cCCCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCC--Chh-------------------
Q 010837 39 LSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCG--ALK------------------- 97 (499)
Q Consensus 39 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~------------------- 97 (499)
+.+|..+.+=+.|++. ..+|.+.++.-+|+.|...|++.+..+-..|+...+-.+ ++.
T Consensus 110 l~~~~~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~ 188 (625)
T KOG4422|consen 110 LADPLQVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTS 188 (625)
T ss_pred cCCchhhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccc
Confidence 3446677777777765 457889999999999999999999888877777654221 111
Q ss_pred ------HHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHH
Q 010837 98 ------YAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR 171 (499)
Q Consensus 98 ------~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~ 171 (499)
-|. ++-+....+..+|..+|.++|+--..+.|.+++++-.....+.+..+||.+|.+- . +...+
T Consensus 189 sWK~G~vAd-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~-----S----~~~~K 258 (625)
T KOG4422|consen 189 SWKSGAVAD-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGAS-----S----YSVGK 258 (625)
T ss_pred ccccccHHH-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHH-----H----hhccH
Confidence 122 3333334567799999999999999999999999999888899999999999875 2 22338
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHH----HHHHhcc----CCChHhHHHHHHHHHhCCCHHH-HHHHHHh
Q 010837 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYAR----IVFDMML----EKNVICSTSMISGFMSQGFVED-AEEIFRK 242 (499)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~----~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~ 242 (499)
.+..+|....+.||..|+|+++.+..+.|+++.|. +++.+|. +|...+|..+|..+.+-++..+ |..+..+
T Consensus 259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d 338 (625)
T KOG4422|consen 259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND 338 (625)
T ss_pred HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence 89999999999999999999999999999987765 4455553 4567788888888888777654 3333332
Q ss_pred cC--------CC----ChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcc----cCCC---chhHHHHHHHHHhcCChHHH
Q 010837 243 TV--------EK----DIVVYNAMIEGYSISIETARKALEVHCQLIKNV----FFED---VKLGSALVDMYAKCGKIDDA 303 (499)
Q Consensus 243 ~~--------~~----~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~a 303 (499)
+. +| |...|...+..|... .+.+-|.++..-+.... +.|+ ...|..+..+.++....+.-
T Consensus 339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l-~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~ 417 (625)
T KOG4422|consen 339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSL-RDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVT 417 (625)
T ss_pred HHHhhccCcccCCCCchhHHHHHHHHHHHHh-hhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 12 334455555555433 55555665555443321 1122 12344555556666666666
Q ss_pred HHHHHhcCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH
Q 010837 304 RRVFDHMQQ----KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV 351 (499)
Q Consensus 304 ~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 351 (499)
...|+.|.- |+..+...++++..-.|.++-.-++|.++...|..-+..
T Consensus 418 ~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~ 469 (625)
T KOG4422|consen 418 LKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSD 469 (625)
T ss_pred HHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHH
Confidence 666666653 455566666666666666666667777666665443333
No 25
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.74 E-value=7.9e-14 Score=140.00 Aligned_cols=391 Identities=5% Similarity=-0.029 Sum_probs=291.3
Q ss_pred HHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHHHHHhC
Q 010837 48 LPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIAGYLKN 124 (499)
Q Consensus 48 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 124 (499)
...++..+...|+.++|+.++++..... +........+...+...|++++|+++|+++.+ .+...+..++..+...
T Consensus 71 v~dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 71 VDDWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADA 149 (822)
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc
Confidence 3378888888999999999999988221 22334444446688899999999999999874 3566777888899999
Q ss_pred CChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhH
Q 010837 125 GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSY 204 (499)
Q Consensus 125 g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 204 (499)
++.++|++.++++... .|+...+..+...+ ...++...|.+.++++.+.. +.+...+..+...+.+.|-...
T Consensus 150 ~q~~eAl~~l~~l~~~--dp~~~~~l~layL~-----~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~ 221 (822)
T PRK14574 150 GRGGVVLKQATELAER--DPTVQNYMTLSYLN-----RATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEP 221 (822)
T ss_pred CCHHHHHHHHHHhccc--CcchHHHHHHHHHH-----HhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHH
Confidence 9999999999999875 66766664433333 23444545999999998875 5567788889999999999999
Q ss_pred HHHHHHhccCC-ChH--------hHHHHHHHH-----HhCCC---HHHHHHHHHhcCC-----CCh-hh----HHHHHHH
Q 010837 205 ARIVFDMMLEK-NVI--------CSTSMISGF-----MSQGF---VEDAEEIFRKTVE-----KDI-VV----YNAMIEG 257 (499)
Q Consensus 205 A~~~~~~~~~~-~~~--------~~~~l~~~~-----~~~g~---~~~a~~~~~~~~~-----~~~-~~----~~~ll~~ 257 (499)
|.++.+.-+.- +.. ....+++.- ....+ .+.|+.-++.+.. |.. .. ..-.+.+
T Consensus 222 a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~a 301 (822)
T PRK14574 222 ALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGA 301 (822)
T ss_pred HHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHH
Confidence 99988876531 110 011111110 01122 3344554554442 321 11 1223344
Q ss_pred HhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---------ChhHHHHHHHHHHhC
Q 010837 258 YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---------NVFTWTSMIDGYGKN 328 (499)
Q Consensus 258 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~ 328 (499)
+... +...++++.++.+...+.+....+-..+.++|...++.++|..+|+++..+ +......|.-++...
T Consensus 302 L~~r-~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~ 380 (822)
T PRK14574 302 LLVR-HQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNES 380 (822)
T ss_pred HHHh-hhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhc
Confidence 4444 778899999999999987766778889999999999999999999998542 233356788999999
Q ss_pred CChhHHHHHHHHHHHcCC-----------CC--CHH-HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHH
Q 010837 329 GNPNQALELFCMMQECCV-----------QP--NYV-TFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMV 393 (499)
Q Consensus 329 g~~~~a~~~~~~m~~~~~-----------~p--~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~ 393 (499)
+++++|..+++++.+... .| |-. .+..++..+...|++.+|++.++++.. ..| |..+...+.
T Consensus 381 e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~---~aP~n~~l~~~~A 457 (822)
T PRK14574 381 EQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS---TAPANQNLRIALA 457 (822)
T ss_pred ccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHH
Confidence 999999999999987311 12 222 344567778899999999999999983 356 889999999
Q ss_pred HHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 394 DLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
..+...|.+.+|++.++.... +-+..+....+.++...+++++|..+.+.+.+..|+.
T Consensus 458 ~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~ 517 (822)
T PRK14574 458 SIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPED 517 (822)
T ss_pred HHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCc
Confidence 999999999999999987665 4456778888889999999999999999999999887
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.74 E-value=6.9e-15 Score=141.65 Aligned_cols=437 Identities=14% Similarity=0.095 Sum_probs=239.0
Q ss_pred CCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCC--ChHHHHHHHHHHHcCCChhHHHHHhccCCCC--C--hHHHH
Q 010837 42 PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKP--NTNISIKLLILHLKCGALKYAGQMFDELPQR--T--LSAYN 115 (499)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~--~~~~~ 115 (499)
+.++...+.|...+-..|++..+..+...+......- -...|-.+.++|-..|++++|...|.+..+. + +-.+-
T Consensus 267 ~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~ 346 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLV 346 (1018)
T ss_pred CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcccccc
Confidence 5566677777777777777777777777777654221 2234556677777777777777777665532 2 22334
Q ss_pred HHHHHHHhCCChhhHHHHHHHHHHcCCCCChh-hHHHHhhhccccccCCcCcchhHHHHHHHHH----------------
Q 010837 116 YMIAGYLKNGQVEESLSLVRKLVSSGERPDGY-TFSMILKASTCCRSNVPLPRNLGRMVHAQIL---------------- 178 (499)
Q Consensus 116 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~---------------- 178 (499)
-|...+.+.|+++.+...|+...+. .||.. |..++-..|+..+ ......+.|..+.....
T Consensus 347 GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~-~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql 423 (1018)
T KOG2002|consen 347 GLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSA-KKQEKRDKASNVLGKVLEQTPVDSEAWLELAQL 423 (1018)
T ss_pred chhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhh-hhhHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 4566677777777777777776654 34433 2222222221110 11122333333333333
Q ss_pred ---------------------HcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCC-------C------hHhHHHHH
Q 010837 179 ---------------------KCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK-------N------VICSTSMI 224 (499)
Q Consensus 179 ---------------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~------~~~~~~l~ 224 (499)
..+..+.+...|.+...+...|++++|...|+..... + +.+-..+.
T Consensus 424 ~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 424 LEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 3333444455555555555555555555555544221 1 11223344
Q ss_pred HHHHhCCCHHHHHHHHHhcC--CCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHH
Q 010837 225 SGFMSQGFVEDAEEIFRKTV--EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDD 302 (499)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 302 (499)
..+-..++++.|.+.|..+. .|+-+....-+.+..+..+...+|...+....... ..++..+..+...+.+...+..
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcc
Confidence 44445555566666665554 23332222222233444445555555555555432 2244444445555666666666
Q ss_pred HHHHHHhcCC-----CChhHHHHHHHHHHh------------CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCc
Q 010837 303 ARRVFDHMQQ-----KNVFTWTSMIDGYGK------------NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365 (499)
Q Consensus 303 a~~~~~~~~~-----~~~~~~~~l~~~~~~------------~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 365 (499)
|..-|+.+.+ +|+.+.-+|...|.+ .+..++|+.+|.+..... +-|...-+.+.-+++..|+
T Consensus 583 a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 583 AKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred cccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccC
Confidence 6554444332 244444444444332 234566777777666542 3455566666666777777
Q ss_pred HHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 010837 366 VDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE----KPNSDVWAALLSSCRLHDDVEMANIAA 441 (499)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~ 441 (499)
+.+|..+|..+.+.. .-...+|-.+.++|..+|++..|+++|+.... +.+....+.|.+++.+.|.+.+|.+.+
T Consensus 662 ~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 662 FSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred chHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 777777777776432 12334566777777777777777777766554 356677777777777777777777777
Q ss_pred HHHHhcCCCCCCchhHHHHHH------------------HHhcCChHHHHHHHHHHHhCCCc
Q 010837 442 NEIFKLNANDRPGAYVALSNT------------------LAAAGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 442 ~~~~~~~~~~~~~~~~~l~~~------------------~~~~g~~~~A~~~~~~~~~~~~~ 485 (499)
..+....|......|+..+.. ....+..+.|.++|..|...+-.
T Consensus 740 l~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 740 LKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 777777766634334432221 11123456666777776655543
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.72 E-value=2.4e-14 Score=137.95 Aligned_cols=427 Identities=14% Similarity=0.089 Sum_probs=274.1
Q ss_pred CCCcchHHHHHHhh---hCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCC------hH
Q 010837 42 PLTATSLPSALQHY---INSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRT------LS 112 (499)
Q Consensus 42 ~~~~~~~~~ll~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------~~ 112 (499)
|.++.++..|...- -....+..+...+....... +-++.+.+.|...|.-.|+++.+..+.+.+...+ ..
T Consensus 230 p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~ae 308 (1018)
T KOG2002|consen 230 PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAE 308 (1018)
T ss_pred hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHH
Confidence 44555555543332 33445666777777666654 5688899999999999999999999998877533 33
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHH--HHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHH
Q 010837 113 AYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFS--MILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT 190 (499)
Q Consensus 113 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 190 (499)
+|-.+.++|-..|++++|...|.+..+. .||..++. -+...+ ...++.+.+...|+.+.+.. +-+..+..
T Consensus 309 s~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~-----i~~~dle~s~~~fEkv~k~~-p~~~etm~ 380 (1018)
T KOG2002|consen 309 SFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMY-----IKRGDLEESKFCFEKVLKQL-PNNYETMK 380 (1018)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHH-----HHhchHHHHHHHHHHHHHhC-cchHHHHH
Confidence 6888999999999999999999888765 45554433 455666 88889999999999888764 44555666
Q ss_pred HHHHHHHhCC----ChhHHHHHHHhccCC---ChHhH--------------------------------------HHHHH
Q 010837 191 ALVDSYVKGG----KTSYARIVFDMMLEK---NVICS--------------------------------------TSMIS 225 (499)
Q Consensus 191 ~l~~~~~~~g----~~~~A~~~~~~~~~~---~~~~~--------------------------------------~~l~~ 225 (499)
.|...|...+ ..+.|..++.+..++ |...| |.+..
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvas 460 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPPEVLNNVAS 460 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHH
Confidence 6666666654 455566665555432 23333 33334
Q ss_pred HHHhCCCHHHHHHHHHhcCC-------CCh-----hhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHH
Q 010837 226 GFMSQGFVEDAEEIFRKTVE-------KDI-----VVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDM 293 (499)
Q Consensus 226 ~~~~~g~~~~a~~~~~~~~~-------~~~-----~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (499)
.+...|++++|...|+.... +|. .|...-+..+....++.+.|.+.+..+.+..+. -+..|--+...
T Consensus 461 lhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~m 539 (1018)
T KOG2002|consen 461 LHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCM 539 (1018)
T ss_pred HHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHH
Confidence 45555566666655554431 111 122222333333335555666666666554321 11122222211
Q ss_pred HHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHc--------
Q 010837 294 YAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNYVTFLGALSACG-------- 361 (499)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~-------- 361 (499)
....+...+|...+..... .++..+..+...+.+...+..|.+-|+...+.- ..+|.++...|...|.
T Consensus 540 a~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~r 619 (1018)
T KOG2002|consen 540 ARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSR 619 (1018)
T ss_pred HHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccccc
Confidence 2222455566666655543 355666666667777777777776555554321 2345555555555433
Q ss_pred ----ccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCH
Q 010837 362 ----HAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDV 434 (499)
Q Consensus 362 ----~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 434 (499)
..+..++|.++|..+. ...| |...-|.+.-++...|++.+|..+|.+..+ ..+..+|..+.++|...|++
T Consensus 620 n~ek~kk~~~KAlq~y~kvL---~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy 696 (1018)
T KOG2002|consen 620 NPEKEKKHQEKALQLYGKVL---RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQY 696 (1018)
T ss_pred ChHHHHHHHHHHHHHHHHHH---hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHH
Confidence 1244667888888777 3345 777777788888888888888888888876 23556788888888888888
Q ss_pred HHHHHHHHHHHh-cCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 435 EMANIAANEIFK-LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 435 ~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
-.|++.|+...+ .....++.+...|.+++.+.|++.+|.+.+.....
T Consensus 697 ~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~ 744 (1018)
T KOG2002|consen 697 RLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARH 744 (1018)
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 888888887665 44556677888888888888888888887766554
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=9.3e-15 Score=129.21 Aligned_cols=406 Identities=16% Similarity=0.159 Sum_probs=266.6
Q ss_pred HHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHH-HHHHHHHcCCChhHHHHHhccCCC--C------ChHHHHHHHHH
Q 010837 50 SALQHYINSDTPFYGLKIHAHITKTGVKPNTNISI-KLLILHLKCGALKYAGQMFDELPQ--R------TLSAYNYMIAG 120 (499)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~--~------~~~~~~~li~~ 120 (499)
.|.+.|.......+|+..++-+.+...-|+.-... .+...+.+.+++.+|++.+.-... | .+...+.+.-.
T Consensus 206 nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvt 285 (840)
T KOG2003|consen 206 NLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVT 285 (840)
T ss_pred HHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCee
Confidence 33444455555566666666666655444443221 234455666677777776653321 1 22345555566
Q ss_pred HHhCCChhhHHHHHHHHHHcCCCCChh-hHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCC------------Cchh
Q 010837 121 YLKNGQVEESLSLVRKLVSSGERPDGY-TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK------------ADDV 187 (499)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~ 187 (499)
+.+.|+++.|+.-|+...+. .|+.. .||.+|.+ ..-++.+..++.|..|+..-.. |+..
T Consensus 286 fiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~------f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ 357 (840)
T KOG2003|consen 286 FIQAGQYDDAINSFDHCMEE--APNFIAALNLIICA------FAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN 357 (840)
T ss_pred EEecccchhhHhhHHHHHHh--CccHHhhhhhhhhh------eecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence 78889999999999887664 56655 45555544 4566777788888888754322 2222
Q ss_pred HHHHHH-----HHHHhCC--ChhHHHHHHHhcc----CCChH-------------hHH--------HHHHHHHhCCCHHH
Q 010837 188 LYTALV-----DSYVKGG--KTSYARIVFDMML----EKNVI-------------CST--------SMISGFMSQGFVED 235 (499)
Q Consensus 188 ~~~~l~-----~~~~~~g--~~~~A~~~~~~~~----~~~~~-------------~~~--------~l~~~~~~~g~~~~ 235 (499)
..+.-+ .-+-+.. +-++++-.--++. .++-. .+. .-...|.++|+++.
T Consensus 358 ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ 437 (840)
T KOG2003|consen 358 LLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEG 437 (840)
T ss_pred HHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHH
Confidence 222222 2222211 1222222222222 22110 000 11223888999999
Q ss_pred HHHHHHhcCCCChhhHHHH------HHH---------------------------------HhcChhhHHHHHHHHHHHH
Q 010837 236 AEEIFRKTVEKDIVVYNAM------IEG---------------------------------YSISIETARKALEVHCQLI 276 (499)
Q Consensus 236 a~~~~~~~~~~~~~~~~~l------l~~---------------------------------~~~~~~~~~~a~~~~~~~~ 276 (499)
|.++++-..+.|..+-.+. +.. ..-..|+.++|...+++.+
T Consensus 438 aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal 517 (840)
T KOG2003|consen 438 AIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEAL 517 (840)
T ss_pred HHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHH
Confidence 9888877654333221111 000 0112367788888888887
Q ss_pred HcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcC---CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 010837 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ---QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353 (499)
Q Consensus 277 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 353 (499)
...-......|| +.-.+-+.|++++|+++|-++. ..++.+.-.+...|-...+..+|++++.+.... ++.|+...
T Consensus 518 ~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 518 NNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred cCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 765444444444 3334677889999999887765 357777777888888889999999998887664 56788899
Q ss_pred HHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHH-hhc
Q 010837 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDVWAALLSSC-RLH 431 (499)
Q Consensus 354 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~~-~~~ 431 (499)
+.|...|-+.|+...|.+.+-.--+ -++.+..+..-|..-|....-+++++.+|++..- +|+..-|..++..| .+.
T Consensus 596 skl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhc
Confidence 9999999999999999988765441 3344888888888889999999999999998765 79999999998776 467
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCC
Q 010837 432 DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGK 468 (499)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 468 (499)
|++++|.+++++..+.-|+. ......|++.+...|-
T Consensus 674 gnyqka~d~yk~~hrkfped-ldclkflvri~~dlgl 709 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRKFPED-LDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhCccc-hHHHHHHHHHhccccc
Confidence 99999999999999998888 8889999999888774
No 29
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=2e-13 Score=119.99 Aligned_cols=377 Identities=10% Similarity=0.024 Sum_probs=220.3
Q ss_pred CCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHH
Q 010837 42 PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121 (499)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 121 (499)
|.+..+|..+|.+.++-...+.|.+++++..+...+.+..++|.+|.+-.-.-+-+..-++..+-..||..++|+++.+.
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~ 283 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCA 283 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHH
Confidence 66778888888888888888888888888877766888888888887655443322233333333368888888888888
Q ss_pred HhCCChh----hHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcc-hhHHHHHHHHH----HcCCC----CchhH
Q 010837 122 LKNGQVE----ESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPR-NLGRMVHAQIL----KCDVK----ADDVL 188 (499)
Q Consensus 122 ~~~g~~~----~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~-~~a~~~~~~~~----~~~~~----~~~~~ 188 (499)
++.|+++ .|++++.+|++-|+.|...+|..+|..+ .+.++. ..+..+..++. -..++ .|...
T Consensus 284 akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f-----~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 284 AKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNF-----KRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHh-----cccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 8888765 4567777888888888888888888877 333333 22333333332 22222 24446
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhccCC-----------ChHhHHHHHHHHHhCCCHHHHHHHHHhcC----CCChhhHHH
Q 010837 189 YTALVDSYVKGGKTSYARIVFDMMLEK-----------NVICSTSMISGFMSQGFVEDAEEIFRKTV----EKDIVVYNA 253 (499)
Q Consensus 189 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ 253 (499)
|...+..|.+..+.+-|.++-.-+... ...-|..+....++....+.-..+|+.|+ -|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 667777777888877777776555332 12345556666777777777777777776 356666666
Q ss_pred HHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcC-CCChhHHHHHHHHHHh--CCC
Q 010837 254 MIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ-QKNVFTWTSMIDGYGK--NGN 330 (499)
Q Consensus 254 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~l~~~~~~--~g~ 330 (499)
++++.... +.++-.-+++.++...|..-+.....- .+.++-.-+ .|+...-..+-....+ ..-
T Consensus 439 ~lrA~~v~-~~~e~ipRiw~D~~~~ght~r~~l~ee-------------il~~L~~~k~hp~tp~r~Ql~~~~ak~aad~ 504 (625)
T KOG4422|consen 439 LLRALDVA-NRLEVIPRIWKDSKEYGHTFRSDLREE-------------ILMLLARDKLHPLTPEREQLQVAFAKCAADI 504 (625)
T ss_pred HHHHHhhc-CcchhHHHHHHHHHHhhhhhhHHHHHH-------------HHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 66655444 555566666666666553222211111 111111111 1221111111111111 111
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHH---HHHHHHHhcCCHHHHHH
Q 010837 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYA---CMVDLLGRAGSLEQALK 407 (499)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~---~l~~~~~~~~~~~~a~~ 407 (499)
.+.....-.+|.+.. ......+.+...+.+.|..++|.+++..+.++..--|.....+ -+++.-.+.++...|..
T Consensus 505 ~e~~e~~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~ 582 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIE 582 (625)
T ss_pred HHHHHhhHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHH
Confidence 122223334455433 3444566666667888999999998888865544344333344 55566667788888888
Q ss_pred HHHhCCC--CCCHH-HHHHHHHHHhhcCCHHHHHH
Q 010837 408 FVLEMPE--KPNSD-VWAALLSSCRLHDDVEMANI 439 (499)
Q Consensus 408 ~~~~~~~--~~~~~-~~~~l~~~~~~~~~~~~a~~ 439 (499)
.++-+.. .|... .-+.+...|.-...-.+++.
T Consensus 583 ~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls 617 (625)
T KOG4422|consen 583 VLQLASAFNLPICEGLAQRIMEDFAINQEQKEALS 617 (625)
T ss_pred HHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHh
Confidence 8887755 12222 33444455544444444443
No 30
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=3.4e-11 Score=111.77 Aligned_cols=429 Identities=12% Similarity=0.070 Sum_probs=283.6
Q ss_pred HHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC--------CCChH----------
Q 010837 51 ALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP--------QRTLS---------- 112 (499)
Q Consensus 51 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--------~~~~~---------- 112 (499)
|..++++...++.|..+++...+. ++-+..+|..-...=-..|+.+...++.++-. ..+..
T Consensus 412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e 490 (913)
T KOG0495|consen 412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE 490 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence 344666777777788887777654 46677777666666666777777666655321 01111
Q ss_pred ---------------------------HHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCC-hhhHHHHhhhccccccCCc
Q 010837 113 ---------------------------AYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD-GYTFSMILKASTCCRSNVP 164 (499)
Q Consensus 113 ---------------------------~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~ 164 (499)
+|+.-...|.+.+.++-|..+|...++. .|. ...|..+...- ...
T Consensus 491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~e-----k~h 563 (913)
T KOG0495|consen 491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFE-----KSH 563 (913)
T ss_pred hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHH-----Hhc
Confidence 3444444455555555555666555543 222 23333333222 445
Q ss_pred CcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHH
Q 010837 165 LPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFR 241 (499)
Q Consensus 165 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~ 241 (499)
|..+....+++.....- +-....|.....-+...||...|..++....+. +...|-.-+.....+.+++.|..+|.
T Consensus 564 gt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~lla 642 (913)
T KOG0495|consen 564 GTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLA 642 (913)
T ss_pred CcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHH
Confidence 55666666666666542 333444555555666677777777777666442 45667777777777777777777777
Q ss_pred hcC--CCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--C-Chh
Q 010837 242 KTV--EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVF 316 (499)
Q Consensus 242 ~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~ 316 (499)
+.. .+....|.--+..- .-.+..++|.+++++.++.- +.-...|-.+...+-+.++++.|...|..-.+ | .+.
T Consensus 643 kar~~sgTeRv~mKs~~~e-r~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip 720 (913)
T KOG0495|consen 643 KARSISGTERVWMKSANLE-RYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP 720 (913)
T ss_pred HHhccCCcchhhHHHhHHH-HHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch
Confidence 665 34444333222211 11266777777777766642 11234566666777777777777777766554 3 445
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHH
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLL 396 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 396 (499)
.|-.+...--+.|.+-+|..++++..-.+ +-+...|...|..-.+.|+.+.|..++.+..++ ++.+...|..-|...
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le 797 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLE 797 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhc
Confidence 66666666667777888888888776653 446667777777777888888888887777743 344566677777777
Q ss_pred HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHH
Q 010837 397 GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476 (499)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 476 (499)
.+.++-......+++... |......+...+....++++|.+.|.+..+.+++. ..+|..+...+.+.|.-++-.+++
T Consensus 798 ~~~~rkTks~DALkkce~--dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~-GD~wa~fykfel~hG~eed~kev~ 874 (913)
T KOG0495|consen 798 PRPQRKTKSIDALKKCEH--DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN-GDAWAWFYKFELRHGTEEDQKEVL 874 (913)
T ss_pred cCcccchHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc-chHHHHHHHHHHHhCCHHHHHHHH
Confidence 777776666666666654 66677777888888999999999999999999998 999999999999999999999999
Q ss_pred HHHHhCCCccCccccccccCCC
Q 010837 477 EKMKLRGVLKDTGCSWVGTESG 498 (499)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~ 498 (499)
+++.. ..|.-|..|+.+.+.
T Consensus 875 ~~c~~--~EP~hG~~W~avSK~ 894 (913)
T KOG0495|consen 875 KKCET--AEPTHGELWQAVSKD 894 (913)
T ss_pred HHHhc--cCCCCCcHHHHHhhh
Confidence 98866 678888899877653
No 31
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=4.1e-14 Score=131.36 Aligned_cols=274 Identities=13% Similarity=0.040 Sum_probs=222.3
Q ss_pred CChhHHHHHHHhccCC--C-hHhHHHHHHHHHhCCCHHHHHHHHHhcCC--C----ChhhHHHHHHHHhcChhhHHHHHH
Q 010837 200 GKTSYARIVFDMMLEK--N-VICSTSMISGFMSQGFVEDAEEIFRKTVE--K----DIVVYNAMIEGYSISIETARKALE 270 (499)
Q Consensus 200 g~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~ll~~~~~~~~~~~~a~~ 270 (499)
-+..+|...|..+.+. | ......+..+|...+++++|.++|+.+.+ | +...|.+.+-.+-+. -++.
T Consensus 333 y~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~-----v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE-----VALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh-----HHHH
Confidence 3578899999887553 3 35667788999999999999999999873 2 678888888776433 3444
Q ss_pred HHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC
Q 010837 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ 347 (499)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 347 (499)
++.+-+-..-+-.+.+|.++..+|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+.... +.
T Consensus 408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 4433322233456889999999999999999999999999874 457888888888899999999999998865 33
Q ss_pred CC-HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHH
Q 010837 348 PN-YVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAA 423 (499)
Q Consensus 348 p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~ 423 (499)
|. ...|-.+...|.+.++++.|+-.|+.+. .+.| +.++...+...+.+.|+.|+|+++++++.. +.|+..--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 32 3356667788999999999999999998 6778 677778888889999999999999999876 445555555
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 010837 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGV 484 (499)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 484 (499)
.+..+...+++++|+..++++.+.-|+. ...|..++..|.+.|+.+.|+.-|--+.+...
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~e-s~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQE-SSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 6677888899999999999999999988 89999999999999999999988877766443
No 32
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.63 E-value=7.3e-16 Score=138.93 Aligned_cols=250 Identities=19% Similarity=0.210 Sum_probs=100.0
Q ss_pred HHHHhCCCHHHHHHHHHhcC----CCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCCh
Q 010837 225 SGFMSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300 (499)
Q Consensus 225 ~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 300 (499)
..+.+.|++++|++++++.. .|+...|-.++..++...++.+.|...++.+...+.. ++..+..++.. ...+++
T Consensus 16 ~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~ 93 (280)
T PF13429_consen 16 RLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDP 93 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccc
Confidence 33444444444444443221 1233334344444444445555666666655554433 44455555555 577888
Q ss_pred HHHHHHHHhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 301 DDARRVFDHMQQ--KNVFTWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 301 ~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
++|..++....+ ++...+..++..+.+.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.+++..
T Consensus 94 ~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al 173 (280)
T PF13429_consen 94 EEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKAL 173 (280)
T ss_dssp ------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888877766543 455667777777888888888888888876532 34566677777788888888888888888888
Q ss_pred HhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCc
Q 010837 378 RDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG 454 (499)
Q Consensus 378 ~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 454 (499)
+ ..| +......++..+...|+.+++.++++.... +.|...+..+..++...|+.++|...+++..+..|.+ +.
T Consensus 174 ~---~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d-~~ 249 (280)
T PF13429_consen 174 E---LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD-PL 249 (280)
T ss_dssp H---H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT--HH
T ss_pred H---cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc-cc
Confidence 3 356 466777888888888888887777666554 2345567778888888888888888888888888877 78
Q ss_pred hhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 455 AYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
+...++.++...|+.++|.++.++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 88888888888888888888877654
No 33
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=4.5e-12 Score=112.87 Aligned_cols=248 Identities=15% Similarity=0.098 Sum_probs=183.7
Q ss_pred HHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccC--CCchhHHHHHHHHHhcCCh
Q 010837 226 GFMSQGFVEDAEEIFRKTV---EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFF--EDVKLGSALVDMYAKCGKI 300 (499)
Q Consensus 226 ~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~ 300 (499)
++-...+.+++..-.+... -|+..-+-+.+.++.....++++|+.+|+++.++.+- -|..+|..++ |.+..+-
T Consensus 236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~s 313 (559)
T KOG1155|consen 236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhhH
Confidence 3444444555544444333 2344444555555555666777777777777766321 1344555544 3333221
Q ss_pred H--H-HHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 301 D--D-ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 301 ~--~-a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
. - |..+ -.+.+--+.|+.++.+-|.-.++.++|...|++..+.+ +-....|+.+.+-|...++...|.+-++++.
T Consensus 314 kLs~LA~~v-~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAv 391 (559)
T KOG1155|consen 314 KLSYLAQNV-SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAV 391 (559)
T ss_pred HHHHHHHHH-HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHH
Confidence 1 1 1111 12223345566777778888899999999999998853 3345678888889999999999999999999
Q ss_pred HhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCc
Q 010837 378 RDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG 454 (499)
Q Consensus 378 ~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 454 (499)
.+.| |-..|-.|..+|.-.+...-|+-.|++... +.|...|.+|..+|.+.++.++|+..|.+++..+-.. ..
T Consensus 392 ---di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte-~~ 467 (559)
T KOG1155|consen 392 ---DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE-GS 467 (559)
T ss_pred ---hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc-hH
Confidence 6677 889999999999999999999999999987 5678999999999999999999999999999988765 78
Q ss_pred hhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 455 AYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
.+..|+..|.+.++.++|.+.+++.++
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999988765
No 34
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=1.6e-11 Score=109.39 Aligned_cols=280 Identities=14% Similarity=0.124 Sum_probs=190.0
Q ss_pred HHHHHhCCChhHHHHHHHhccCC----ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCC------ChhhHHHHHHHHhcCh
Q 010837 193 VDSYVKGGKTSYARIVFDMMLEK----NVICSTSMISGFMSQGFVEDAEEIFRKTVEK------DIVVYNAMIEGYSISI 262 (499)
Q Consensus 193 ~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~ll~~~~~~~ 262 (499)
..++-...+.+++.+-.+..... +...-+....+.....++++|+.+|+++.+. |..+|..++-.-...
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~- 312 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDK- 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhh-
Confidence 34454555555555544444332 2233334444556667777777777777633 445565555443211
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPNQALELFC 339 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (499)
..+..+.+-.-.--+--+.|...+.+.|.-.++.++|...|++..+- ....|+.|..-|....+...|++-|+
T Consensus 313 ----skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 313 ----SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred ----HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 22222222222222234556667778888888888999988888763 44678888888888888889999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CC
Q 010837 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KP 416 (499)
Q Consensus 340 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~ 416 (499)
...+-+ +-|-..|-.|.++|.-.+...=|.-+|++.. .++| |...|.+|.++|.+.++.++|++-|.+... ..
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~---~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKAL---ELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHH---hcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 888752 4577788888888888888888888888887 5677 788889999999999999999998888776 34
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC-----CCC-CCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLN-----AND-RPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+...+..|.+.|-+.++.++|...+++.++.. ..+ ...+..-|...+.+.+++++|.........
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 45788888888888888888888888777622 222 123334466777788888888776555443
No 35
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.56 E-value=3.9e-10 Score=104.89 Aligned_cols=418 Identities=13% Similarity=0.083 Sum_probs=282.9
Q ss_pred CCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHHHHHhCCChhhHHHH
Q 010837 57 NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIAGYLKNGQVEESLSL 133 (499)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~ 133 (499)
...+.+.|.-++....+.- +.+.. |.-+|++..-++.|..+++...+ .+...|-+-...--.+|+.+...++
T Consensus 388 elE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~ki 462 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKI 462 (913)
T ss_pred hccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence 3345555666666655542 33333 33456666777778877776653 4667777666666678888888777
Q ss_pred HHH----HHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCc--hhHHHHHHHHHHhCCChhHHHH
Q 010837 134 VRK----LVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKAD--DVLYTALVDSYVKGGKTSYARI 207 (499)
Q Consensus 134 ~~~----m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~ 207 (499)
+.+ +...|+..+...|..=-..| ...|..-.+..+....+..|+.-. -.||..-.+.|.+.+.++-|..
T Consensus 463 i~rgl~~L~~ngv~i~rdqWl~eAe~~-----e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carA 537 (913)
T KOG0495|consen 463 IDRGLSELQANGVEINRDQWLKEAEAC-----EDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARA 537 (913)
T ss_pred HHHHHHHHhhcceeecHHHHHHHHHHH-----hhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHH
Confidence 765 34457788877777777777 666777777788877777776543 3477777888888888888888
Q ss_pred HHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCChhh-HHHHHHHHhcChhhHHHHHHHHHHHHHcccC
Q 010837 208 VFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIVV-YNAMIEGYSISIETARKALEVHCQLIKNVFF 281 (499)
Q Consensus 208 ~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~-~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~ 281 (499)
+|....+- +...|...+..--..|..++...+|++.+ -|.... |.......-.. |+...|..++..+.+....
T Consensus 538 Vya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~a-gdv~~ar~il~~af~~~pn 616 (913)
T KOG0495|consen 538 VYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKA-GDVPAARVILDQAFEANPN 616 (913)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhc-CCcHHHHHHHHHHHHhCCC
Confidence 88777653 45667666666666777888888887776 233333 33333333333 7777888888888776654
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010837 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359 (499)
Q Consensus 282 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 359 (499)
+..+|-.-+..-.....++.|..+|.+... ++...|..-+....-.++.++|.+++++..+. ++.-...|..+.+.
T Consensus 617 -seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi 694 (913)
T KOG0495|consen 617 -SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQI 694 (913)
T ss_pred -cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHH
Confidence 566777777778888888888888877654 55566665555555667788888888877764 23333466677777
Q ss_pred HcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHH
Q 010837 360 CGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEM 436 (499)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~ 436 (499)
+.+.++++.|...|..-. ..-| .+..|-.|.+.=-+.|..-+|..++++..- +.+...|...|+.-.+.|+.+.
T Consensus 695 ~e~~~~ie~aR~aY~~G~---k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~ 771 (913)
T KOG0495|consen 695 EEQMENIEMAREAYLQGT---KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQ 771 (913)
T ss_pred HHHHHHHHHHHHHHHhcc---ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHH
Confidence 777788888887776655 2234 455666777766677788888888877665 3466778888888888888888
Q ss_pred HHHHHHHHHhcCCCC-----------------------------CCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 010837 437 ANIAANEIFKLNAND-----------------------------RPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487 (499)
Q Consensus 437 a~~~~~~~~~~~~~~-----------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 487 (499)
|..+..++++.-|.. ++.....+...+....+++.|.+.|.+..+. .||
T Consensus 772 a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~--d~d 849 (913)
T KOG0495|consen 772 AELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKK--DPD 849 (913)
T ss_pred HHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcc--CCc
Confidence 777766665432221 4566667777788888888888888887764 455
Q ss_pred ccccc
Q 010837 488 TGCSW 492 (499)
Q Consensus 488 ~~~~~ 492 (499)
-|-.|
T Consensus 850 ~GD~w 854 (913)
T KOG0495|consen 850 NGDAW 854 (913)
T ss_pred cchHH
Confidence 44444
No 36
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=9.5e-11 Score=104.82 Aligned_cols=420 Identities=12% Similarity=0.083 Sum_probs=295.5
Q ss_pred CCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC--CChH-HHHHHHHHHHhCCChhhHHHH
Q 010837 57 NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ--RTLS-AYNYMIAGYLKNGQVEESLSL 133 (499)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~a~~~ 133 (499)
..+++..|..+|+..+.-. .-+...|-..+.+=.++..+..|..+++.... |.+. .|--.+..=-..|++..|.++
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqi 163 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQI 163 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHH
Confidence 3456677888888887766 45667777777777888888888888887653 3332 344444444456888889999
Q ss_pred HHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcc
Q 010837 134 VRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213 (499)
Q Consensus 134 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 213 (499)
|+...+. .|+...|++.++.= ......+.|..+++..+-. .|++..|-.....-.++|+...|.++|+...
T Consensus 164 ferW~~w--~P~eqaW~sfI~fE-----lRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAi 234 (677)
T KOG1915|consen 164 FERWMEW--EPDEQAWLSFIKFE-----LRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAI 234 (677)
T ss_pred HHHHHcC--CCcHHHHHHHHHHH-----HHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 9888764 88888888888876 6777788888888887653 4888888888888888898888888888775
Q ss_pred CC------ChHhHHHHHHHHHhCCCHHHHHHHHHhcCC--CC---hhhHHH---HHHHHhcChhhHHHHHH-----HHHH
Q 010837 214 EK------NVICSTSMISGFMSQGFVEDAEEIFRKTVE--KD---IVVYNA---MIEGYSISIETARKALE-----VHCQ 274 (499)
Q Consensus 214 ~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~---~~~~~~---ll~~~~~~~~~~~~a~~-----~~~~ 274 (499)
+. +...+.++..-=.++..++.|.-+|+-..+ |. ...|.. .=..+....| .+.++- -++.
T Consensus 235 e~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~g-IEd~Iv~KRk~qYE~ 313 (677)
T KOG1915|consen 235 EFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEG-IEDAIVGKRKFQYEK 313 (677)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhh-hHHHHhhhhhhHHHH
Confidence 42 233455555555566777888777765542 21 222222 2222222211 112221 2333
Q ss_pred HHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--CCh---hHHHHHHH-----H---HHhCCChhHHHHHHHHH
Q 010837 275 LIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--KNV---FTWTSMID-----G---YGKNGNPNQALELFCMM 341 (499)
Q Consensus 275 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~---~~~~~l~~-----~---~~~~g~~~~a~~~~~~m 341 (499)
+.+.++ -|-.+|--.++.-...|+.+...++|+++.. |.. ..|.-.|- + -....+++.+.++|+..
T Consensus 314 ~v~~np-~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~ 392 (677)
T KOG1915|consen 314 EVSKNP-YNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQAC 392 (677)
T ss_pred HHHhCC-CCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 333332 3455666677777788999999999998874 211 12222211 1 12467899999999999
Q ss_pred HHcCCCCCHHHHHHHHHHH----cccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--C
Q 010837 342 QECCVQPNYVTFLGALSAC----GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--K 415 (499)
Q Consensus 342 ~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 415 (499)
.+. ++-..+||.-+--.| .++.++..|.+++.... |.-|...++...|..=.+.+.+|.+..++++..+ +
T Consensus 393 l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P 468 (677)
T KOG1915|consen 393 LDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP 468 (677)
T ss_pred Hhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh
Confidence 883 455566776654444 46789999999999988 8899989999999998999999999999999887 4
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC-CCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCccccccc
Q 010837 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN-DRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVG 494 (499)
Q Consensus 416 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 494 (499)
-+..+|......-...|+.+.|..+|+-+++...- .....|...|..-...|.++.|..+++++.+..-... +||.
T Consensus 469 e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k---vWis 545 (677)
T KOG1915|consen 469 ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK---VWIS 545 (677)
T ss_pred HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch---HHHh
Confidence 46678888887778899999999999998875432 2145678888888899999999999999988654443 4554
Q ss_pred c
Q 010837 495 T 495 (499)
Q Consensus 495 ~ 495 (499)
+
T Consensus 546 F 546 (677)
T KOG1915|consen 546 F 546 (677)
T ss_pred H
Confidence 3
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.55 E-value=8.1e-12 Score=117.90 Aligned_cols=274 Identities=10% Similarity=0.057 Sum_probs=181.2
Q ss_pred CCChhHHHHHHHhccCC--ChHh-HHHHHHHHHhCCCHHHHHHHHHhcCC--CChhhHHHHH-HHHhcChhhHHHHHHHH
Q 010837 199 GGKTSYARIVFDMMLEK--NVIC-STSMISGFMSQGFVEDAEEIFRKTVE--KDIVVYNAMI-EGYSISIETARKALEVH 272 (499)
Q Consensus 199 ~g~~~~A~~~~~~~~~~--~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ll-~~~~~~~~~~~~a~~~~ 272 (499)
.|+++.|++.+....+. +... |........+.|+++.|.+.+.++.+ |+...+..+. ..+....|+.+.|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 57888888777765443 2233 33334445778888888888877763 3333222212 22333447777888888
Q ss_pred HHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---Chh--------HHHHHHHHHHhCCChhHHHHHHHHH
Q 010837 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---NVF--------TWTSMIDGYGKNGNPNQALELFCMM 341 (499)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~--------~~~~l~~~~~~~g~~~~a~~~~~~m 341 (499)
+.+.+..+ -++.....+...|.+.|++++|.+++..+.+. +.. .|..++.......+.+...++|+.+
T Consensus 177 ~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 88877663 25667777888888888888888888877652 111 2333343334445556666666665
Q ss_pred HHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHH
Q 010837 342 QECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-KP-NSD 419 (499)
Q Consensus 342 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~ 419 (499)
-+. .+.+......+..++...|+.++|.+++++..+ ..|+... .++.+....++.+++++..+...+ .| |..
T Consensus 256 p~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~ 329 (398)
T PRK10747 256 SRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTPL 329 (398)
T ss_pred CHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCHH
Confidence 433 345667777788888888888888888888773 2444422 223333455888888888877766 34 455
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
.+..+...|.+.+++++|.+.|+.+.+..|++ ..+..+..++.+.|+.++|.+++++-..
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~--~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPDA--YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67778888888888888888888888876654 6677888888888888888888876543
No 38
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=1.1e-12 Score=121.97 Aligned_cols=278 Identities=13% Similarity=0.044 Sum_probs=215.2
Q ss_pred chhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCC------ChHhHHHHHHHHHhCCCHHHHHHHH
Q 010837 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK------NVICSTSMISGFMSQGFVEDAEEIF 240 (499)
Q Consensus 167 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~ 240 (499)
...|...|..+.+ .+.-+..+...+..+|...+++++|+++|+.+.+. +...|.+.+.-+-+.=...---+-+
T Consensus 335 ~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L 413 (638)
T KOG1126|consen 335 CREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL 413 (638)
T ss_pred HHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence 3455556655322 23334466777889999999999999999999653 7788888887654332222111111
Q ss_pred HhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHH
Q 010837 241 RKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTS 320 (499)
Q Consensus 241 ~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 320 (499)
-.+-+..+.+|.++-++++-. ++.+.|+..|++.++... -...+|+.+..-+.....+|.|...|+.....|+..|++
T Consensus 414 i~~~~~sPesWca~GNcfSLQ-kdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnA 491 (638)
T KOG1126|consen 414 IDTDPNSPESWCALGNCFSLQ-KDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNA 491 (638)
T ss_pred HhhCCCCcHHHHHhcchhhhh-hHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHH
Confidence 222244567898888888666 888899999999988543 157788989999999999999999999999877766554
Q ss_pred ---HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHH
Q 010837 321 ---MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLL 396 (499)
Q Consensus 321 ---l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~ 396 (499)
+...|.+.++++.|+-.|++..+-+ +-+.+....+...+.+.|+.++|+++++++. .+.| |+..--.-+..+
T Consensus 492 wYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~---~ld~kn~l~~~~~~~il 567 (638)
T KOG1126|consen 492 WYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAI---HLDPKNPLCKYHRASIL 567 (638)
T ss_pred HHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHH---hcCCCCchhHHHHHHHH
Confidence 6788999999999999999998843 3355667777788889999999999999998 5566 555555566778
Q ss_pred HhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 397 GRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
...+++++|+..++++++ +.+...+..+...|.+.|+.+.|+.-|--+.+.+|+.
T Consensus 568 ~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 568 FSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 889999999999999988 4456788889999999999999999999999988877
No 39
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.53 E-value=6.4e-11 Score=111.83 Aligned_cols=277 Identities=12% Similarity=0.066 Sum_probs=180.1
Q ss_pred CCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHH--HHHHHHHhCCC
Q 010837 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYT--ALVDSYVKGGK 201 (499)
Q Consensus 124 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~ 201 (499)
.|++++|.+.+....+..-.| ...|.....+. ...|+.+.+...+..+.+. .|+...+. .....+...|+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA-----~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~ 168 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAA-----QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNE 168 (398)
T ss_pred CCCHHHHHHHHHHHHhcccch-HHHHHHHHHHH-----HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCC
Confidence 577777776666554432111 11222222222 4555666666666665542 33332221 22445566666
Q ss_pred hhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHc
Q 010837 202 TSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKN 278 (499)
Q Consensus 202 ~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 278 (499)
++.|.+.++++.+. +......+...|.+.|++++|.+++..+. +.
T Consensus 169 ~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~--------------------------------k~ 216 (398)
T PRK10747 169 NHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMA--------------------------------KA 216 (398)
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH--------------------------------Hc
Confidence 66666666665432 44455555666666666666665555554 33
Q ss_pred ccCCCc-------hhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 010837 279 VFFEDV-------KLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348 (499)
Q Consensus 279 ~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 348 (499)
+..++. ..|..++.......+.+...++++.+.+ .++.....+...+...|+.++|.+++++..+. +|
T Consensus 217 ~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~ 294 (398)
T PRK10747 217 HVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QY 294 (398)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CC
Confidence 222111 1122223333334455666667776653 47778888999999999999999999998873 55
Q ss_pred CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHH
Q 010837 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDVWAALLS 426 (499)
Q Consensus 349 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~ 426 (499)
+.... ++.+....++.+++.+..+...++ .| |...+..+...+.+.+++++|.+.|+...+ .|+..++..+..
T Consensus 295 ~~~l~--~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~ 369 (398)
T PRK10747 295 DERLV--LLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLAD 369 (398)
T ss_pred CHHHH--HHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 55322 334445669999999999998843 45 667788999999999999999999999888 699999999999
Q ss_pred HHhhcCCHHHHHHHHHHHHhc
Q 010837 427 SCRLHDDVEMANIAANEIFKL 447 (499)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~ 447 (499)
.+.+.|+.++|.+++++....
T Consensus 370 ~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 370 ALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHcCCHHHHHHHHHHHHhh
Confidence 999999999999999988764
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.53 E-value=7.9e-11 Score=111.88 Aligned_cols=144 Identities=12% Similarity=0.024 Sum_probs=88.6
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH---HHHHHHHHcccCcHHHHHHHHH
Q 010837 301 DDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT---FLGALSACGHAGLVDKGREIFE 374 (499)
Q Consensus 301 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~ll~~~~~~~~~~~a~~~~~ 374 (499)
+...+.++...+ .+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.+.+.++
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e 323 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIE 323 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence 334444444442 36677777777778888888888888877764 333331 1111112234466677777777
Q ss_pred HchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh--CCC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010837 375 SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE--MPE-KPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 375 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (499)
...+...-.|+.....++...+.+.|++++|.+.|+. ..+ .|+...+..+...+.+.|+.++|.+++++...
T Consensus 324 ~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 324 KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6663322222214556777777777777777777773 333 57777777777777777777777777777644
No 41
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.53 E-value=2.5e-11 Score=116.78 Aligned_cols=312 Identities=13% Similarity=0.109 Sum_probs=204.0
Q ss_pred CcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhc---cCCChHhHHHHHHHHHhCCCHHHHHHHHH
Q 010837 165 LPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM---LEKNVICSTSMISGFMSQGFVEDAEEIFR 241 (499)
Q Consensus 165 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 241 (499)
|+.+.|..++.++++.. +.....|.+|...|-..|+.+++...+-.. ...|...|..+.....+.|+++.|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 56666666666666554 445556666666666666666666544332 22355666666666666677777766666
Q ss_pred hcCC--CChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhH----HHHHHHHHhcCChHHHHHHHHhcCC---
Q 010837 242 KTVE--KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG----SALVDMYAKCGKIDDARRVFDHMQQ--- 312 (499)
Q Consensus 242 ~~~~--~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~--- 312 (499)
+.++ |+..-+..--..+++..|+...|..-|.++....++.|..-. ...++.+...++-+.|.+.++....
T Consensus 232 rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~ 311 (895)
T KOG2076|consen 232 RAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEK 311 (895)
T ss_pred HHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcc
Confidence 6652 322222222222333335555666666666665442232222 2234556666666777777766553
Q ss_pred --CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCC---------------------------CCCHHHHHHHHHHHccc
Q 010837 313 --KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV---------------------------QPNYVTFLGALSACGHA 363 (499)
Q Consensus 313 --~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~---------------------------~p~~~~~~~ll~~~~~~ 363 (499)
-+...++.++..+.+...++.|......+..... .++...+ .+.-++.+.
T Consensus 312 ~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L 390 (895)
T KOG2076|consen 312 DEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHL 390 (895)
T ss_pred ccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcc
Confidence 1344567777777777778888777777665211 2222221 222233444
Q ss_pred CcHHHHHHHHHHchHhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC---CCHHHHHHHHHHHhhcCCHHHHH
Q 010837 364 GLVDKGREIFESMERDYSMKP--KMEHYACMVDLLGRAGSLEQALKFVLEMPEK---PNSDVWAALLSSCRLHDDVEMAN 438 (499)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~ 438 (499)
+..+....+..... ...+.| +...|.-+.++|...|++.+|+++|..+... .+...|-.+..+|...|.+++|.
T Consensus 391 ~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~ 469 (895)
T KOG2076|consen 391 KERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAI 469 (895)
T ss_pred cccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHH
Confidence 44444444444444 335444 6778899999999999999999999999883 35668999999999999999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 439 IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
+.++.++...|.. ..+-..|...+.+.|+.++|.+++..+.
T Consensus 470 e~y~kvl~~~p~~-~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 470 EFYEKVLILAPDN-LDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHhcCCCc-hhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 9999999999988 8889999999999999999999999876
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.53 E-value=3.8e-11 Score=109.74 Aligned_cols=433 Identities=12% Similarity=0.056 Sum_probs=301.2
Q ss_pred CCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhcc--CCCCChHHHHHHH
Q 010837 41 NPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE--LPQRTLSAYNYMI 118 (499)
Q Consensus 41 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~li 118 (499)
+..+.+-+..+++-+....++..|.-+-++....+..|+ .---+.+++.-.|+++.|..+... +.+.|..+.....
T Consensus 12 d~~s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~--d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~ 89 (611)
T KOG1173|consen 12 DELSLEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPA--DIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAA 89 (611)
T ss_pred ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChH--HHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 345667788888888888899999999998877764444 444567888888999999888765 4468888988899
Q ss_pred HHHHhCCChhhHHHHHH----HHHHc---------CCCCChhh----HHHHhhhccccc--cCCcCcchhHHHHHHHHHH
Q 010837 119 AGYLKNGQVEESLSLVR----KLVSS---------GERPDGYT----FSMILKASTCCR--SNVPLPRNLGRMVHAQILK 179 (499)
Q Consensus 119 ~~~~~~g~~~~a~~~~~----~m~~~---------g~~p~~~~----~~~ll~~~~~~~--~~~~~~~~~a~~~~~~~~~ 179 (499)
.++.+..++++|+.++. .+..- -+.+|..- -+.-.+.|...+ -......+.|...+.+...
T Consensus 90 ~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~ 169 (611)
T KOG1173|consen 90 KCLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL 169 (611)
T ss_pred HHHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh
Confidence 99999999999999998 32110 01111111 111112221000 0233445566666665544
Q ss_pred cCCCCchhHHHH---HHHHHHhCC------------------ChhHHHHHHHhc----cC----------------CChH
Q 010837 180 CDVKADDVLYTA---LVDSYVKGG------------------KTSYARIVFDMM----LE----------------KNVI 218 (499)
Q Consensus 180 ~~~~~~~~~~~~---l~~~~~~~g------------------~~~~A~~~~~~~----~~----------------~~~~ 218 (499)
. |..-|.. |+....-.. +.+....+|+.. .+ .+..
T Consensus 170 ~----D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~d 245 (611)
T KOG1173|consen 170 A----DAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLD 245 (611)
T ss_pred c----chhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHH
Confidence 3 3333322 222111110 111111222211 00 1233
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHH
Q 010837 219 CSTSMISGFMSQGFVEDAEEIFRKTVEK---DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295 (499)
Q Consensus 219 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (499)
.......-+...+++.+..++++...+. ....+..-|.++... |+..+-..+-..+.+.- +-.+.+|-++.-.|.
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el-~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYEL-GKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHh-cccchHHHHHHHHHHhC-CCCCcchhhHHHHHH
Confidence 4444555688899999999999988743 444556666666555 44445555555666543 346778999999999
Q ss_pred hcCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHH
Q 010837 296 KCGKIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372 (499)
Q Consensus 296 ~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 372 (499)
..|+.++|++.|.+...- -...|-.+..+|+-.|..|+|+..|...-+. ++-...-+-.+.--|.+.++.+.|.++
T Consensus 324 ~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~F 402 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKF 402 (611)
T ss_pred HhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHH
Confidence 999999999999987653 3458999999999999999999999877653 121222233344557888999999999
Q ss_pred HHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--------CC-CHHHHHHHHHHHhhcCCHHHHHHHHH
Q 010837 373 FESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--------KP-NSDVWAALLSSCRLHDDVEMANIAAN 442 (499)
Q Consensus 373 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 442 (499)
|.... ++.| |+.+.+-+.-.....+.+.+|..+|+.... ++ -..+++.|..+|.+.+.+++|+..++
T Consensus 403 f~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q 479 (611)
T KOG1173|consen 403 FKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ 479 (611)
T ss_pred HHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence 99988 7777 788888888888889999999999988764 12 45678999999999999999999999
Q ss_pred HHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCc
Q 010837 443 EIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDT 488 (499)
Q Consensus 443 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 488 (499)
+.+...+.. ..++..++-.|...|+++.|...|.+... +.|+-
T Consensus 480 ~aL~l~~k~-~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n 522 (611)
T KOG1173|consen 480 KALLLSPKD-ASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDN 522 (611)
T ss_pred HHHHcCCCc-hhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCcc
Confidence 999999998 99999999999999999999999987643 55553
No 43
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.50 E-value=1.7e-10 Score=103.73 Aligned_cols=397 Identities=14% Similarity=0.075 Sum_probs=249.0
Q ss_pred HHHHhhhCCCChhhHHHHHHHHHHhCCCCC-hHHHHHHHHHHHcCCChhHHHHHhccCCCCChH---HHHHHHHHHHhCC
Q 010837 50 SALQHYINSDTPFYGLKIHAHITKTGVKPN-TNISIKLLILHLKCGALKYAGQMFDELPQRTLS---AYNYMIAGYLKNG 125 (499)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g 125 (499)
....-|-+.|.+++|.+.+.+.++.. |+ +.-|......|...|+|+++.+.-....+-++. ++..-.+++-..|
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~l~--p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg 197 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIELC--PDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLG 197 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHhcC--CCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhc
Confidence 34456678899999999999998874 66 788899999999999999998877766654444 4444455666667
Q ss_pred ChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHH--------HHHHH-cC--CCCchhHHHHHHH
Q 010837 126 QVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVH--------AQILK-CD--VKADDVLYTALVD 194 (499)
Q Consensus 126 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~--------~~~~~-~~--~~~~~~~~~~l~~ 194 (499)
++++|+.=+. ...++..+ ......-.+.+++ .+-.+ .+ +-|+....++...
T Consensus 198 ~~~eal~D~t-------------v~ci~~~F-----~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~ 259 (606)
T KOG0547|consen 198 KFDEALFDVT-------------VLCILEGF-----QNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFG 259 (606)
T ss_pred cHHHHHHhhh-------------HHHHhhhc-----ccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHh
Confidence 7766654322 22223222 1111111222222 11111 12 1233332222222
Q ss_pred HHHhCCChhHHHHHHHhccCCChHhHHHHHHHH----Hh-CCCHHHHHHHHHhcC-----CC-----Chhh----HHHHH
Q 010837 195 SYVKGGKTSYARIVFDMMLEKNVICSTSMISGF----MS-QGFVEDAEEIFRKTV-----EK-----DIVV----YNAMI 255 (499)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~----~~-~g~~~~a~~~~~~~~-----~~-----~~~~----~~~ll 255 (499)
.+... +. ..+..+...+...+..++ .. ...+.+|.+.+.+-. .+ |... -..++
T Consensus 260 sF~~~--~~------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~ 331 (606)
T KOG0547|consen 260 SFHAD--PK------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLL 331 (606)
T ss_pred hcccc--cc------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHH
Confidence 22110 00 000000001111111111 10 012333333332211 01 1111 11111
Q ss_pred HH-HhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCh
Q 010837 256 EG-YSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNP 331 (499)
Q Consensus 256 ~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 331 (499)
.+ +--..|+.-.+..-|+..++....++. .|-.+..+|....+.++.+..|++..+ .|+.+|..-.+.+.-.+++
T Consensus 332 ~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~ 410 (606)
T KOG0547|consen 332 RGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQY 410 (606)
T ss_pred hhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHH
Confidence 11 111236666888888888887665443 255566679999999999999998875 3667888878888888899
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010837 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411 (499)
Q Consensus 332 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 411 (499)
++|..=|++.++.. +-+...|..+..+..+.+++++++..|++.+++ ++.-+.+|+.....+...+++++|.+.|+.
T Consensus 411 e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 411 EEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 99999999988742 334567777777777889999999999999854 344678899999999999999999999998
Q ss_pred CCC-CCC-------HHH--HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 412 MPE-KPN-------SDV--WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 412 ~~~-~~~-------~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
..+ .|. ..+ -..++-. .-.+++..|+.+++++++.+|+- ...|..|+..-.+.|+.++|+++|++-.
T Consensus 488 ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkc-e~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 488 AIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKC-EQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHhhccccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchH-HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 876 333 222 2222222 23489999999999999999988 8899999999999999999999998754
No 44
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.50 E-value=1.5e-13 Score=123.97 Aligned_cols=248 Identities=15% Similarity=0.162 Sum_probs=110.5
Q ss_pred HHHHHHHhCCChhHHHHHHHhc-cC----CChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCC---hhhHHHHHHHHhcCh
Q 010837 191 ALVDSYVKGGKTSYARIVFDMM-LE----KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKD---IVVYNAMIEGYSISI 262 (499)
Q Consensus 191 ~l~~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~ 262 (499)
.+...+.+.|++++|.++++.. .. .+...|..+...+...++++.|.+.++++...+ ...+..++.. . ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~-~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-L-QD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-c-cc
Confidence 4577788999999999999543 22 256667777778888899999999999988432 3344444444 3 33
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC-----CChhHHHHHHHHHHhCCChhHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-----KNVFTWTSMIDGYGKNGNPNQALEL 337 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~ 337 (499)
+++++|..+.....+.. +++..+..++..+.+.++++++..+++.+.+ .+...|..+...+.+.|+.++|++.
T Consensus 91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 77888888887766543 4566677888889999999999999988652 4677888999999999999999999
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--
Q 010837 338 FCMMQECCVQP-NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-- 414 (499)
Q Consensus 338 ~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-- 414 (499)
+++..+. .| |......++..+...|+.+++..+++...+.. +.+...+..+..+|...|+.++|+.+|++...
T Consensus 169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~--~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA--PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC--cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 9999985 45 56778889999999999999999999888442 34667788999999999999999999999877
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010837 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 415 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (499)
+.|......+..++...|+.++|.++.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 34788888999999999999999999887654
No 45
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.49 E-value=2.9e-11 Score=102.91 Aligned_cols=229 Identities=12% Similarity=0.109 Sum_probs=154.3
Q ss_pred HHHHHHHhCCChhHHHHHHHhccCCC---hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHH
Q 010837 191 ALVDSYVKGGKTSYARIVFDMMLEKN---VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARK 267 (499)
Q Consensus 191 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~ 267 (499)
.|..-|...|-+|.|+.+|..+.+.+ ......|+..|-...+|++|++.-+++.+.+..+++..|..++
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfy-------- 183 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFY-------- 183 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHH--------
Confidence 35556677777777777777766532 3345556666777777777766666665555445555444432
Q ss_pred HHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 010837 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344 (499)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (499)
.-|...+....+++.|..++.+..+. .+..--.+.+.....|+++.|.+.|+...++
T Consensus 184 --------------------CELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ 243 (389)
T COG2956 184 --------------------CELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ 243 (389)
T ss_pred --------------------HHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh
Confidence 23445555667788888888887653 3334445667888899999999999999887
Q ss_pred CCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH-HhCCCCCCHHHHHH
Q 010837 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFV-LEMPEKPNSDVWAA 423 (499)
Q Consensus 345 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~ 423 (499)
+..--..+...|..+|.+.|+.++....+.++.+. .+....-..+.+.-....-.+.|..++ +.+..+|+...+..
T Consensus 244 n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~r 320 (389)
T COG2956 244 NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHR 320 (389)
T ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHH
Confidence 65555567888899999999999999999988833 344444455555544555556665554 45555899999999
Q ss_pred HHHHHhh---cCCHHHHHHHHHHHHhcCCC
Q 010837 424 LLSSCRL---HDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 424 l~~~~~~---~~~~~~a~~~~~~~~~~~~~ 450 (499)
++..-.. .|..++-...++.|+.....
T Consensus 321 l~~~~l~daeeg~~k~sL~~lr~mvge~l~ 350 (389)
T COG2956 321 LMDYHLADAEEGRAKESLDLLRDMVGEQLR 350 (389)
T ss_pred HHHhhhccccccchhhhHHHHHHHHHHHHh
Confidence 9987643 34566667777777764433
No 46
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.48 E-value=6.2e-11 Score=105.39 Aligned_cols=374 Identities=13% Similarity=0.133 Sum_probs=251.5
Q ss_pred hhhCCCChhhHHHHHHHHHHhCCCCC----hHHHHHHHHHHHcCCChhHHHHHhccCCC--CChHHHHHHHHHHHhCCCh
Q 010837 54 HYINSDTPFYGLKIHAHITKTGVKPN----TNISIKLLILHLKCGALKYAGQMFDELPQ--RTLSAYNYMIAGYLKNGQV 127 (499)
Q Consensus 54 ~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~ 127 (499)
.+.+.+++..|+.+++..+.+-...+ ..+.+.+.-.+.+.|.++.|+..|+...+ |+..+--.|+-++..-|+.
T Consensus 246 i~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ 325 (840)
T KOG2003|consen 246 IHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDA 325 (840)
T ss_pred eeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcH
Confidence 34566788899999988777632222 34455566667899999999999998764 6766544455566667899
Q ss_pred hhHHHHHHHHHHcCCCCC------------hhhHHHHhhhccccccCCcCcchhHHHHH---HHHHHcCCCCchh-----
Q 010837 128 EESLSLVRKLVSSGERPD------------GYTFSMILKASTCCRSNVPLPRNLGRMVH---AQILKCDVKADDV----- 187 (499)
Q Consensus 128 ~~a~~~~~~m~~~g~~p~------------~~~~~~ll~~~~~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~----- 187 (499)
++..+.|.+|+.-...|| ....+..|..=. .+.....+...|+... ..++.--+.|+-.
T Consensus 326 ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~-lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dw 404 (840)
T KOG2003|consen 326 EKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDH-LKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDW 404 (840)
T ss_pred HHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHH-HHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHH
Confidence 999999999986532222 222222221100 0000000011111111 1111111112110
Q ss_pred --------HH--------HHHHHHHHhCCChhHHHHHHHhccCCChHhHHH----H-----H------------------
Q 010837 188 --------LY--------TALVDSYVKGGKTSYARIVFDMMLEKNVICSTS----M-----I------------------ 224 (499)
Q Consensus 188 --------~~--------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----l-----~------------------ 224 (499)
.+ -.-..-+.+.|+++.|+++++-+.++|..+-.+ | +
T Consensus 405 cle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln 484 (840)
T KOG2003|consen 405 CLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALN 484 (840)
T ss_pred HHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhc
Confidence 01 112346889999999999988876543211110 0 0
Q ss_pred -------------HHHHhCCCHHHHHHHHHhcCCCChhhHHHHHH--HHhcChhhHHHHHHHHHHHHHcccCCCchhHHH
Q 010837 225 -------------SGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE--GYSISIETARKALEVHCQLIKNVFFEDVKLGSA 289 (499)
Q Consensus 225 -------------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 289 (499)
......|++++|.+.|++....|...-.++.. .-+...|..++|++.|-.+... +..+..+...
T Consensus 485 ~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~q 563 (840)
T KOG2003|consen 485 IDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQ 563 (840)
T ss_pred ccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHH
Confidence 00233688999999999988776654333322 1234458888999888766543 2235667777
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcH
Q 010837 290 LVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366 (499)
Q Consensus 290 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 366 (499)
+...|-...+...|++++-+... .|+.....|...|-+.|+-.+|...+-+--.. ++.+..|..-|...|....-+
T Consensus 564 ianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ 642 (840)
T KOG2003|consen 564 IANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFS 642 (840)
T ss_pred HHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHH
Confidence 88899999999999999988764 58889999999999999999999887665443 577888888888889998999
Q ss_pred HHHHHHHHHchHhcCCCCChhHHHHHHHH-HHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCC
Q 010837 367 DKGREIFESMERDYSMKPKMEHYACMVDL-LGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDD 433 (499)
Q Consensus 367 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 433 (499)
++++.+|++.. -++|+..-|..++.. +.+.|++.+|.++++.+.. +.|..+...|++.|...|-
T Consensus 643 ekai~y~ekaa---liqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 643 EKAINYFEKAA---LIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHH---hcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999999887 789999999887765 4578999999999999877 4678888889988877663
No 47
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.48 E-value=3.8e-10 Score=108.84 Aligned_cols=334 Identities=12% Similarity=0.078 Sum_probs=197.9
Q ss_pred HhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhcc---CCCCChHHHHHHHHHHHhCCChhh
Q 010837 53 QHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDE---LPQRTLSAYNYMIAGYLKNGQVEE 129 (499)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~---~~~~~~~~~~~li~~~~~~g~~~~ 129 (499)
..+...|+.++|.+++.++++.. +.....|..|...|-..|+.+++...+-. +.+.|...|-.+.....+.|++++
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 33344599999999999999987 67888999999999999999999887654 345677889999999999999999
Q ss_pred HHHHHHHHHHcCCCCChh-hHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHH----HHHHHHHHhCCChhH
Q 010837 130 SLSLVRKLVSSGERPDGY-TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLY----TALVDSYVKGGKTSY 204 (499)
Q Consensus 130 a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~ 204 (499)
|.-+|.+.++. .|+.. .+---...| .+.|+...|..-+.++....-+.|..-+ ..+++.+...++-+.
T Consensus 226 A~~cy~rAI~~--~p~n~~~~~ers~L~-----~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 226 ARYCYSRAIQA--NPSNWELIYERSSLY-----QKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred HHHHHHHHHhc--CCcchHHHHHHHHHH-----HHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 99999999886 34332 222223334 6778888888888888776532233222 334566777777788
Q ss_pred HHHHHHhccCC-----ChHhHHHHHHHHHhCCCHHHHHHHHHhcCC----CChhhHHHH------HHHHhcChhhHHHHH
Q 010837 205 ARIVFDMMLEK-----NVICSTSMISGFMSQGFVEDAEEIFRKTVE----KDIVVYNAM------IEGYSISIETARKAL 269 (499)
Q Consensus 205 A~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l------l~~~~~~~~~~~~a~ 269 (499)
|.+.++..... +...++.++..+.+...++.|......+.. +|...+.+- ...++..
T Consensus 299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~-------- 370 (895)
T KOG2076|consen 299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEV-------- 370 (895)
T ss_pred HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccC--------
Confidence 88888777552 445788888889999999988887766542 222111000 0000000
Q ss_pred HHHHHHHHcccCCCchhHHHHHHHHHhcC--ChHHHHHHHHhcCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 010837 270 EVHCQLIKNVFFEDVKLGSALVDMYAKCG--KIDDARRVFDHMQQ----KNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343 (499)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (499)
..+..++..+. .++-++.+.. ...+++..|-.... .++..|.-+..+|...|++.+|+.+|..+..
T Consensus 371 -------~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~ 442 (895)
T KOG2076|consen 371 -------GKELSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITN 442 (895)
T ss_pred -------CCCCCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence 01122222221 1111222222 22222222211111 1334455555555555555555555555555
Q ss_pred cCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 010837 344 CCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMP 413 (499)
Q Consensus 344 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 413 (499)
...--+...|-.+..+|...|..++|.+.|+.+. ...| +...--.|...+.+.|+.++|.+.++.+.
T Consensus 443 ~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl---~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 443 REGYQNAFVWYKLARCYMELGEYEEAIEFYEKVL---ILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred CccccchhhhHHHHHHHHHHhhHHHHHHHHHHHH---hcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 4333344455555555555555555555555555 2334 33344445555555555555555555543
No 48
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.47 E-value=1.6e-09 Score=97.20 Aligned_cols=402 Identities=13% Similarity=0.115 Sum_probs=295.9
Q ss_pred CCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHh
Q 010837 77 KPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMIL 153 (499)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll 153 (499)
..+...|-...+.=...+++..|.++|+.... .++..|--.+..=.++.++..|..+++.....=...|..=|..+.
T Consensus 70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 34555555555555567888899999998874 567778888888899999999999999988742222322222222
Q ss_pred hhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhc--cCCChHhHHHHHHHHHhCC
Q 010837 154 KASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMM--LEKNVICSTSMISGFMSQG 231 (499)
Q Consensus 154 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~l~~~~~~~g 231 (499)
-- ...|+...|.++|....+ ..|+...|++.|+.-.+...++.|..++++. ..|++.+|-....-=.+.|
T Consensus 150 mE------E~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g 221 (677)
T KOG1915|consen 150 ME------EMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHG 221 (677)
T ss_pred HH------HHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcC
Confidence 11 566888999999988764 5899999999999999999999999999996 4589999999999999999
Q ss_pred CHHHHHHHHHhcCC--CChhhHHHHHHHHh---cChhhHHHHHHHHHHHHHcccCCC-chhHHHHHHHHHhcCChHHHHH
Q 010837 232 FVEDAEEIFRKTVE--KDIVVYNAMIEGYS---ISIETARKALEVHCQLIKNVFFED-VKLGSALVDMYAKCGKIDDARR 305 (499)
Q Consensus 232 ~~~~a~~~~~~~~~--~~~~~~~~ll~~~~---~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~ 305 (499)
+...|..+|+...+ .|...-..+..+++ ......+.|..++...++.-++.. ...|......=-+-|+.....+
T Consensus 222 ~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd 301 (677)
T KOG1915|consen 222 NVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIED 301 (677)
T ss_pred cHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHH
Confidence 99999999988763 12222222333332 233667778888888877644332 2355555554455566554444
Q ss_pred HH--------HhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-------HHH---HHHHHHcccC
Q 010837 306 VF--------DHMQQK---NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV-------TFL---GALSACGHAG 364 (499)
Q Consensus 306 ~~--------~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-------~~~---~ll~~~~~~~ 364 (499)
.. +.+.+. |-.+|--.+..-...|+.+...++|++.... ++|-.. .|. ..+-.-....
T Consensus 302 ~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~e 380 (677)
T KOG1915|consen 302 AIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAE 380 (677)
T ss_pred HHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 32 222222 5567777777777889999999999999875 566321 111 1111223568
Q ss_pred cHHHHHHHHHHchHhcCCCC-ChhHHHHH----HHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhcCCHHHHH
Q 010837 365 LVDKGREIFESMERDYSMKP-KMEHYACM----VDLLGRAGSLEQALKFVLEMPE-KPNSDVWAALLSSCRLHDDVEMAN 438 (499)
Q Consensus 365 ~~~~a~~~~~~~~~~~~~~p-~~~~~~~l----~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~ 438 (499)
+++.+.++|+... .+-| ...++..+ ...-.++.+...|.+++..... -|-..+|...|..-.+.+++|.+.
T Consensus 381 d~ertr~vyq~~l---~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcR 457 (677)
T KOG1915|consen 381 DVERTRQVYQACL---DLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCR 457 (677)
T ss_pred hHHHHHHHHHHHH---hhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHH
Confidence 9999999999988 3455 55555544 3344578999999999998887 488999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCcccc
Q 010837 439 IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCS 491 (499)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 491 (499)
.++++.++.+|+. ..+|...+..-...|+.+.|..+|+-.++.....-|...
T Consensus 458 kLYEkfle~~Pe~-c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpell 509 (677)
T KOG1915|consen 458 KLYEKFLEFSPEN-CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELL 509 (677)
T ss_pred HHHHHHHhcChHh-hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHH
Confidence 9999999999998 899999999999999999999999988876654444433
No 49
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.45 E-value=3.6e-11 Score=114.21 Aligned_cols=280 Identities=10% Similarity=0.012 Sum_probs=202.1
Q ss_pred HHhCCChhHHHHHHHhccCC--C-hHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCChhh-HHH-HHHHHhcChhhHHHH
Q 010837 196 YVKGGKTSYARIVFDMMLEK--N-VICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIVV-YNA-MIEGYSISIETARKA 268 (499)
Q Consensus 196 ~~~~g~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~-~~~-ll~~~~~~~~~~~~a 268 (499)
....|+++.|.+.+.+..+. + ...+-....++.+.|+.+.|.+.+.+.. .|+... ... ........ ++.+.|
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~-~~~~~A 172 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQ-NELHAA 172 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHC-CCHHHH
Confidence 35689999999999887653 2 3344555678889999999999999875 344322 222 23333334 889999
Q ss_pred HHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---ChhHHHH----HHHHHHhCCChhHHHHHHHHH
Q 010837 269 LEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---NVFTWTS----MIDGYGKNGNPNQALELFCMM 341 (499)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~----l~~~~~~~g~~~~a~~~~~~m 341 (499)
...++.+.+..+. +...+..+...|.+.|++++|.+.+..+.+. +...+.. ...+....+..+++.+.+..+
T Consensus 173 l~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999998743 5678889999999999999999999998853 3333321 122223444445556678877
Q ss_pred HHcCCC---CCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhH---HHHHHHHHHhcCCHHHHHHHHHhCCC-
Q 010837 342 QECCVQ---PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH---YACMVDLLGRAGSLEQALKFVLEMPE- 414 (499)
Q Consensus 342 ~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~- 414 (499)
.+.... .+...+..+...+...|+.++|.+.+++..++ .|+... ...........++.+.+.+.+++..+
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 775321 27788888999999999999999999999943 454331 11122222345788888888887766
Q ss_pred CCC-H--HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 415 KPN-S--DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 415 ~~~-~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
.|+ . ....++...|.+.|++++|.+.|+........|+...+..++..+.+.|+.++|.+++++-.
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344 3 56678899999999999999999954443334445678899999999999999999998754
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.43 E-value=2.1e-09 Score=94.62 Aligned_cols=291 Identities=12% Similarity=0.086 Sum_probs=175.7
Q ss_pred CCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChh
Q 010837 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTS 203 (499)
Q Consensus 124 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 203 (499)
.|+|.+|.++..+-.+.+-.| ...|....++. ...|+.+.+..++.+..+..-.++...+-+........|+++
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA-----~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~ 170 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAA-----QQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP 170 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHH-----HhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch
Confidence 566777777766665554333 23344444444 556666666666666655433445555555556666666666
Q ss_pred HHHHHHHhccC---CChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHccc
Q 010837 204 YARIVFDMMLE---KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVF 280 (499)
Q Consensus 204 ~A~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~ 280 (499)
.|..-++.+.+ .+.........+|.+.|++.....++.++.+....+ + +++.++
T Consensus 171 aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~-------------~-~e~~~l--------- 227 (400)
T COG3071 171 AARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLS-------------D-EEAARL--------- 227 (400)
T ss_pred hHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCC-------------h-HHHHHH---------
Confidence 66555554433 245555666666666666666666665554322110 0 011100
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010837 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357 (499)
Q Consensus 281 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 357 (499)
...+|..+++-....+..+.-...++.... .++..-.+++.-+.+.|+.++|.++.++..+++..|+. ...
T Consensus 228 --e~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~ 301 (400)
T COG3071 228 --EQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRL 301 (400)
T ss_pred --HHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHH
Confidence 012333344444444444444556666553 35666677777788888888888888888777666652 222
Q ss_pred HHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhcCCHHH
Q 010837 358 SACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDVWAALLSSCRLHDDVEM 436 (499)
Q Consensus 358 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 436 (499)
-.+.+.++.+.-++..+.-....+..| ..+..|...|.+.+.|.+|...|+...+ +|+..+|+.+.+++.+.|+..+
T Consensus 302 ~~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 302 IPRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEE 379 (400)
T ss_pred HhhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHH
Confidence 345566777776776666665544444 6677788888888888888888887666 6888888888888888888888
Q ss_pred HHHHHHHHHhcCCCC
Q 010837 437 ANIAANEIFKLNAND 451 (499)
Q Consensus 437 a~~~~~~~~~~~~~~ 451 (499)
|.+..++....-.+|
T Consensus 380 A~~~r~e~L~~~~~~ 394 (400)
T COG3071 380 AEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHHHhcCC
Confidence 888887776544333
No 51
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.41 E-value=7.1e-11 Score=103.75 Aligned_cols=197 Identities=12% Similarity=0.064 Sum_probs=163.0
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010837 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360 (499)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 360 (499)
...+..+...|...|++++|...++++.+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45667788889999999999999998764 256678888899999999999999999998764 44566777888889
Q ss_pred cccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHH
Q 010837 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMAN 438 (499)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 438 (499)
...|++++|.+.++..............+..+..++...|++++|.+.+++... +.+...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999984322222455677788899999999999999998876 345678888999999999999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 439 IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
..++++.+..+.. +..+..++..+...|+.++|..+.+.+...
T Consensus 190 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQT-AESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCC-HHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999885443 677888899999999999999998877553
No 52
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.37 E-value=3.7e-10 Score=106.35 Aligned_cols=246 Identities=15% Similarity=0.164 Sum_probs=141.0
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHHHhccCC----------Ch-HhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHH
Q 010837 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEK----------NV-ICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNA 253 (499)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 253 (499)
-..+...|...|...|+++.|+.+++...+. .+ ...+.+...|...+++++|..+|+++
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~A---------- 267 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEA---------- 267 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH----------
Confidence 3346667889999999999999999887542 11 13344666777788888887777643
Q ss_pred HHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhH
Q 010837 254 MIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ 333 (499)
Q Consensus 254 ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 333 (499)
..+++...-...+--..+++.|..+|.+.|++++|...++++.
T Consensus 268 ---------------L~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al---------------------- 310 (508)
T KOG1840|consen 268 ---------------LTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERAL---------------------- 310 (508)
T ss_pred ---------------HHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHH----------------------
Confidence 2222222221111123466677778888888888888776543
Q ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHHHcccCcHHHHHHHHHHchHhcC--CCC----ChhHHHHHHHHHHhcCCHHHHH
Q 010837 334 ALELFCMMQECCVQPNYV-TFLGALSACGHAGLVDKGREIFESMERDYS--MKP----KMEHYACMVDLLGRAGSLEQAL 406 (499)
Q Consensus 334 a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~p----~~~~~~~l~~~~~~~~~~~~a~ 406 (499)
+++++.... ..|... .++.+...|+..+++++|..+++...+... +.+ -..+++.|...|...|++++|.
T Consensus 311 --~I~~~~~~~-~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~ 387 (508)
T KOG1840|consen 311 --EIYEKLLGA-SHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAE 387 (508)
T ss_pred --HHHHHhhcc-ChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHH
Confidence 233321100 011111 233334444455555555554444332111 111 1345666666777777777777
Q ss_pred HHHHhCCC-------C--C-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHh----cCCCC--CCchhHHHHHHHHhcCChH
Q 010837 407 KFVLEMPE-------K--P-NSDVWAALLSSCRLHDDVEMANIAANEIFK----LNAND--RPGAYVALSNTLAAAGKWD 470 (499)
Q Consensus 407 ~~~~~~~~-------~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~--~~~~~~~l~~~~~~~g~~~ 470 (499)
++++++.. + + ....++.|...|.+.+.+.+|.++|.+... .|+.. ...+|..|+..|.+.|+++
T Consensus 388 ~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e 467 (508)
T KOG1840|consen 388 ELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYE 467 (508)
T ss_pred HHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHH
Confidence 76666554 1 1 123556666667777777766666665543 23322 2456777777888888888
Q ss_pred HHHHHHHHHH
Q 010837 471 SVTELREKMK 480 (499)
Q Consensus 471 ~A~~~~~~~~ 480 (499)
+|.++.+...
T Consensus 468 ~a~~~~~~~~ 477 (508)
T KOG1840|consen 468 AAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHH
Confidence 8877776655
No 53
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.37 E-value=2.9e-10 Score=97.00 Aligned_cols=249 Identities=12% Similarity=0.125 Sum_probs=173.5
Q ss_pred HhCCCHHHHHHHHHhcCCCChhhHH--HHHHHHhcChhhHHHHHHHHHHHHHcccCCC---chhHHHHHHHHHhcCChHH
Q 010837 228 MSQGFVEDAEEIFRKTVEKDIVVYN--AMIEGYSISIETARKALEVHCQLIKNVFFED---VKLGSALVDMYAKCGKIDD 302 (499)
Q Consensus 228 ~~~g~~~~a~~~~~~~~~~~~~~~~--~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~ 302 (499)
.-+.+.++|.++|-+|.+.|..||. .-+..+.++.|..|.|+.++..+.++---+. ....-.|..-|...|-+|.
T Consensus 46 LLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 46 LLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred HhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 3457888999999888866555544 3455566677888888888888877521111 1233446666788888888
Q ss_pred HHHHHHhcCCCC---hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHcccCcHHHHHHHHHH
Q 010837 303 ARRVFDHMQQKN---VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY----VTFLGALSACGHAGLVDKGREIFES 375 (499)
Q Consensus 303 a~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~ 375 (499)
|+.+|..+.+.+ ......|+..|-...+|++|+++-+++.+.+-++.. ..|.-+...+....+.+.|..++.+
T Consensus 126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 888888887643 345667788888888888888888888876655443 3466677777777888888888888
Q ss_pred chHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 376 MERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPN--SDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 376 ~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
..+. .| .+..--.+.+.+...|+++.|.+.++.+.+ .|+ ..+...|..+|.+.|+.++....+.++.+....+
T Consensus 206 Alqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~ 282 (389)
T COG2956 206 ALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA 282 (389)
T ss_pred HHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc
Confidence 8732 44 333344566777888888888888888876 343 3467778888888888888888888888776655
Q ss_pred CCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 452 RPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 452 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
..-..+........-.+.|...+.+-..
T Consensus 283 --~~~l~l~~lie~~~G~~~Aq~~l~~Ql~ 310 (389)
T COG2956 283 --DAELMLADLIELQEGIDAAQAYLTRQLR 310 (389)
T ss_pred --cHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence 4455555555555555666666555444
No 54
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.35 E-value=1e-09 Score=105.60 Aligned_cols=433 Identities=14% Similarity=0.048 Sum_probs=232.0
Q ss_pred CcccccccCCCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCCh
Q 010837 32 KLQNYDSLSNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTL 111 (499)
Q Consensus 32 ~l~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 111 (499)
.+..+...|..|+..||..+|..|+..|+.+.|. +|.-|.-...+.+...++.++....+.++.+.+. +|..
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~a 83 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLA 83 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCch
Confidence 3455667888999999999999999999999998 8888876665555566666666655555555443 5566
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHH-HH-------HcCC-----------------CCChhhH----------HHHhhhc
Q 010837 112 SAYNYMIAGYLKNGQVEESLSLVRK-LV-------SSGE-----------------RPDGYTF----------SMILKAS 156 (499)
Q Consensus 112 ~~~~~li~~~~~~g~~~~a~~~~~~-m~-------~~g~-----------------~p~~~~~----------~~ll~~~ 156 (499)
.+|..|..+|.+.|+... ++..++ |. ..|+ -||..+. ..+++..
T Consensus 84 Dtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666433 111111 11 1111 1222111 0111111
Q ss_pred ccccc-CCcC-----------cchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCC----hHhH
Q 010837 157 TCCRS-NVPL-----------PRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN----VICS 220 (499)
Q Consensus 157 ~~~~~-~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~ 220 (499)
..+.- ...+ +..-.+.+........-.|+..+|.++++.-...|+.+.|..++.+|.+.+ .+-+
T Consensus 163 ~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred hhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 00000 0000 011122222222221114677777777777777777777777777776542 2222
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcC----CCChhhHHHHHHHHhcChh--------hH---------------HHHHH---
Q 010837 221 TSMISGFMSQGFVEDAEEIFRKTV----EKDIVVYNAMIEGYSISIE--------TA---------------RKALE--- 270 (499)
Q Consensus 221 ~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~ll~~~~~~~~--------~~---------------~~a~~--- 270 (499)
-.++.+ .++...+..+++-|. .|+..|+...+-.+..++. +. ..|..
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~ 319 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLR 319 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHH
Confidence 222222 444444444443332 4554444443333322100 00 00111
Q ss_pred ---------HHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC-------ChhHHHHHHHHHHhC------
Q 010837 271 ---------VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-------NVFTWTSMIDGYGKN------ 328 (499)
Q Consensus 271 ---------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~------ 328 (499)
.+....-.|......+|..... ...+|+-++.+++-..+..| ++..|..++.-|.+.
T Consensus 320 ~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~ 398 (1088)
T KOG4318|consen 320 QNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHIC 398 (1088)
T ss_pred HHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHH
Confidence 1111111233323333332222 33467777777776666532 344454444443331
Q ss_pred ----------------CChhHHHHHHHHHHHcCCCCCHH----------------------------HHHHHHHHHcccC
Q 010837 329 ----------------GNPNQALELFCMMQECCVQPNYV----------------------------TFLGALSACGHAG 364 (499)
Q Consensus 329 ----------------g~~~~a~~~~~~m~~~~~~p~~~----------------------------~~~~ll~~~~~~~ 364 (499)
....+..++.... .||.. .-+.++-.|+..-
T Consensus 399 ~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~ 473 (1088)
T KOG4318|consen 399 SRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEY 473 (1088)
T ss_pred HHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHH
Confidence 1112222222211 22211 1223444444444
Q ss_pred cHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHhhcCCHHHHHH
Q 010837 365 LVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK-----PNSDVWAALLSSCRLHDDVEMANI 439 (499)
Q Consensus 365 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~ 439 (499)
+..++...-+... ..-+ + ..|..||+.+....+.+.|..+.++...+ -+..-+..+.+.+.+.+....+..
T Consensus 474 n~lK~l~~~ekye-~~lf-~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~t 549 (1088)
T KOG4318|consen 474 NKLKILCDEEKYE-DLLF-A--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLST 549 (1088)
T ss_pred HHHHHHHHHHHHH-HHHh-h--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHH
Confidence 5555554333332 2111 2 57899999999999999999999988763 455667888888999999999999
Q ss_pred HHHHHHhcCCCC--CCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 010837 440 AANEIFKLNAND--RPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLK 486 (499)
Q Consensus 440 ~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 486 (499)
+++++.+.-... ...+...+....+..|+.+...+..+-+...|+.-
T Consensus 550 iL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 550 ILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 999998732222 24566677888888999999999999988888877
No 55
>PF13041 PPR_2: PPR repeat family
Probab=99.34 E-value=2.8e-12 Score=81.17 Aligned_cols=48 Identities=33% Similarity=0.739 Sum_probs=46.7
Q ss_pred CChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhc
Q 010837 109 RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKAS 156 (499)
Q Consensus 109 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 156 (499)
||+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999988
No 56
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.33 E-value=1.2e-07 Score=88.66 Aligned_cols=282 Identities=13% Similarity=0.144 Sum_probs=168.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhccCCC-------hHhHHHHHHHHHhCCCHHHHHHHHHhcC-CC-------------
Q 010837 188 LYTALVDSYVKGGKTSYARIVFDMMLEKN-------VICSTSMISGFMSQGFVEDAEEIFRKTV-EK------------- 246 (499)
Q Consensus 188 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~------------- 246 (499)
.|..+.+.|-..|+++.|..+|++..+-+ ..+|......=.+..+++.|+++.++.. -|
T Consensus 389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p 468 (835)
T KOG2047|consen 389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP 468 (835)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence 35566677777777888877777775532 2345555555566677777777776654 11
Q ss_pred -------ChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC----CCh
Q 010837 247 -------DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ----KNV 315 (499)
Q Consensus 247 -------~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~ 315 (499)
+...|...+.. -...|.++....+++.+++..+.....+.| ....+-...-++++.++|++-.. |++
T Consensus 469 vQ~rlhrSlkiWs~y~Dl-eEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LFk~p~v 546 (835)
T KOG2047|consen 469 VQARLHRSLKIWSMYADL-EESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLFKWPNV 546 (835)
T ss_pred HHHHHHHhHHHHHHHHHH-HHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccCCCccH
Confidence 11112222111 122266777777777777766532222222 22234445567778888877553 444
Q ss_pred -hHHHHHHHHHHh---CCChhHHHHHHHHHHHcCCCCCHHHHHHHH--HHHcccCcHHHHHHHHHHchHhcCCCC--Chh
Q 010837 316 -FTWTSMIDGYGK---NGNPNQALELFCMMQECCVQPNYVTFLGAL--SACGHAGLVDKGREIFESMERDYSMKP--KME 387 (499)
Q Consensus 316 -~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll--~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~ 387 (499)
..|+..+.-+.+ .-..+.|..+|++..+ |++|...-+..|+ ..-.+.|-...|+.+++++.. ++++ -..
T Consensus 547 ~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~ 623 (835)
T KOG2047|consen 547 YDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLD 623 (835)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHH
Confidence 367776666554 2468889999999988 6676554332232 222355888899999999763 5555 345
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHH---HHHhhcCCHHHHHHHHHHHHh-cCCCCCCchhHHHHHH
Q 010837 388 HYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDVWAALL---SSCRLHDDVEMANIAANEIFK-LNANDRPGAYVALSNT 462 (499)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~ 462 (499)
.|+..|.--...=-......+|+++.+ -|+...-...+ ..-.+.|..+.|..++....+ .+|..+...|.+.-..
T Consensus 624 myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~F 703 (835)
T KOG2047|consen 624 MYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEF 703 (835)
T ss_pred HHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHH
Confidence 677777644433333444555555554 25554433333 334678899999988887766 5666667778888888
Q ss_pred HHhcCChHHHHH
Q 010837 463 LAAAGKWDSVTE 474 (499)
Q Consensus 463 ~~~~g~~~~A~~ 474 (499)
-.+.|+-+-..+
T Consensus 704 EvrHGnedT~ke 715 (835)
T KOG2047|consen 704 EVRHGNEDTYKE 715 (835)
T ss_pred HHhcCCHHHHHH
Confidence 888888443333
No 57
>PF13041 PPR_2: PPR repeat family
Probab=99.33 E-value=5.8e-12 Score=79.69 Aligned_cols=50 Identities=28% Similarity=0.472 Sum_probs=45.0
Q ss_pred CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcc
Q 010837 313 KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH 362 (499)
Q Consensus 313 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 362 (499)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998875
No 58
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.32 E-value=4.3e-09 Score=92.73 Aligned_cols=279 Identities=13% Similarity=0.091 Sum_probs=197.7
Q ss_pred CCChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCC--Ch--hhHHHHHHHHhcChhhHHHHHHH
Q 010837 199 GGKTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTVEK--DI--VVYNAMIEGYSISIETARKALEV 271 (499)
Q Consensus 199 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~--~~~~~ll~~~~~~~~~~~~a~~~ 271 (499)
.|+|.+|++...+-.+. ....|..-+.+.-+.|+.+.+-.++.+..++ |. ..+.+........ ++.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~-~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNR-RDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhC-CCchhHHHH
Confidence 57788888777665443 2345555566677778888888877777643 22 2233333333333 666677777
Q ss_pred HHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC-----------ChhHHHHHHHHHHhCCChhHHHHHHHH
Q 010837 272 HCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-----------NVFTWTSMIDGYGKNGNPNQALELFCM 340 (499)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (499)
..++.+.+.. ++........+|.+.|++.....++.++.+. ...+|+.+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 7777776653 5667788889999999999999999888763 224677777777777776666667776
Q ss_pred HHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCH
Q 010837 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNS 418 (499)
Q Consensus 341 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~ 418 (499)
.-.+ .+.+...-..++.-+...|+.++|.++..+.. +.+..|+ ...++ ...+-++...-++..++... +.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L-k~~~D~~---L~~~~-~~l~~~d~~~l~k~~e~~l~~h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDAL-KRQWDPR---LCRLI-PRLRPGDPEPLIKAAEKWLKQHPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHH-HhccChh---HHHHH-hhcCCCCchHHHHHHHHHHHhCCCCh
Confidence 6443 45566777778888899999999999999998 4365665 12222 23455666655555444333 2345
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 010837 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487 (499)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 487 (499)
..+..|...|.+.+.+.+|.+.|+..++..++ ...|..+..++.+.|+..+|.++.++....-..|+
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s--~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~ 395 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPS--ASDYAELADALDQLGEPEEAEQVRREALLLTRQPN 395 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC--hhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence 78889999999999999999999988877765 49999999999999999999999988775444443
No 59
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=4.5e-09 Score=94.76 Aligned_cols=153 Identities=15% Similarity=0.073 Sum_probs=128.1
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHH
Q 010837 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLE 403 (499)
Q Consensus 325 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~ 403 (499)
+.-.|+.-.|..-|+..++....++. .|..+...|....+.++.++.|.... .+.| +..+|..-...+.-.++++
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~---~ldp~n~dvYyHRgQm~flL~q~e 411 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAE---DLDPENPDVYYHRGQMRFLLQQYE 411 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHH---hcCCCCCchhHhHHHHHHHHHHHH
Confidence 44568888999999998886433333 26667777899999999999999988 5667 7778888888888889999
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 404 QALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 404 ~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+|..-|++... +.+...|-.+..+..+.+.++++...|++.++.-|.- +..|+....++..+++++.|.+.++..++
T Consensus 412 ~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~-~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 412 EAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC-PEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-chHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 99999999887 3456677778778888899999999999999999988 99999999999999999999999998876
Q ss_pred C
Q 010837 482 R 482 (499)
Q Consensus 482 ~ 482 (499)
.
T Consensus 491 L 491 (606)
T KOG0547|consen 491 L 491 (606)
T ss_pred h
Confidence 4
No 60
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1e-07 Score=84.37 Aligned_cols=264 Identities=12% Similarity=0.028 Sum_probs=189.3
Q ss_pred CCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHh---HHHHHHHHHhCCCHHHHHHHHHhcCCCCh---hhHHHHH
Q 010837 182 VKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVIC---STSMISGFMSQGFVEDAEEIFRKTVEKDI---VVYNAMI 255 (499)
Q Consensus 182 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~ll 255 (499)
++-|+.....+.+.+...|+.++|+..|+....-|..+ .......+.+.|+++....+...+...+. ..|..-.
T Consensus 228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~ 307 (564)
T KOG1174|consen 228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA 307 (564)
T ss_pred CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence 55677788888899999999999999998876654432 22334456678888888877777653332 2222222
Q ss_pred HHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChh
Q 010837 256 EGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGKNGNPN 332 (499)
Q Consensus 256 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~ 332 (499)
...... .+++.|+.+-+..++.... +...|-.-..++...|+.++|.-.|+.... | +..+|..|+.+|...|++.
T Consensus 308 ~~l~~~-K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDE-KKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhh-hhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHH
Confidence 222223 5666777777777665432 333444445567788999999988887653 3 7789999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH-HHH-cccCcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHH
Q 010837 333 QALELFCMMQECCVQPNYVTFLGAL-SAC-GHAGLVDKGREIFESMERDYSMKPK-MEHYACMVDLLGRAGSLEQALKFV 409 (499)
Q Consensus 333 ~a~~~~~~m~~~~~~p~~~~~~~ll-~~~-~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~ 409 (499)
+|.-+-+...+. ++.+..+...+. ..| ....--++|.++++... .+.|+ ....+.+...+...|+.++++.++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 998877765553 455666665552 222 23344678888888877 55674 445677788888999999999999
Q ss_pred HhCCC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 410 LEMPE-KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 410 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
++... .||....+.|...+...+.+++|.+.|..+++.+|..
T Consensus 462 e~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 462 EKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 88776 6899999999999999999999999999999998887
No 61
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.27 E-value=3.8e-10 Score=91.89 Aligned_cols=187 Identities=12% Similarity=0.042 Sum_probs=96.5
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCc
Q 010837 289 ALVDMYAKCGKIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365 (499)
Q Consensus 289 ~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 365 (499)
-|.-.|...|+...|..-+++..+. +..+|..+...|.+.|+.+.|.+-|++..+.. +-+....|....-+|..|+
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC
Confidence 3444555556666666555555542 23345555555555566666666555555531 2233344444444455556
Q ss_pred HHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 010837 366 VDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANE 443 (499)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 443 (499)
+++|...|++........--..+|..+.-+..+.|+.+.|.+.|++..+ +....+...+.......|++-.|...++.
T Consensus 119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 6666666555553322222334555555555555666666555555554 22334445555555555555555555555
Q ss_pred HHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHH
Q 010837 444 IFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477 (499)
Q Consensus 444 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 477 (499)
....+. .+.......|+.-.+.|+.+.+-+.=.
T Consensus 199 ~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~ 231 (250)
T COG3063 199 YQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQA 231 (250)
T ss_pred HHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 555444 335555555555555555555444433
No 62
>PRK12370 invasion protein regulator; Provisional
Probab=99.27 E-value=1.6e-09 Score=106.95 Aligned_cols=259 Identities=14% Similarity=0.008 Sum_probs=170.4
Q ss_pred ChHhHHHHHHHHHh-----CCCHHHHHHHHHhcC--CCChh-hHHHHHHHHhc--------ChhhHHHHHHHHHHHHHcc
Q 010837 216 NVICSTSMISGFMS-----QGFVEDAEEIFRKTV--EKDIV-VYNAMIEGYSI--------SIETARKALEVHCQLIKNV 279 (499)
Q Consensus 216 ~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~--~~~~~-~~~~ll~~~~~--------~~~~~~~a~~~~~~~~~~~ 279 (499)
+...|...+.+-.. .+.+++|...|++.. .|+.. .|..+-.++.. ..++.++|...+++..+..
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld 334 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD 334 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC
Confidence 44555566555322 234678888888887 44433 34333333221 1234678888888888865
Q ss_pred cCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHH
Q 010837 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY-VTFLG 355 (499)
Q Consensus 280 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ 355 (499)
+. +...+..+...+...|++++|...|+++.+ | +...+..+...+...|++++|...+++..+. .|+. ..+..
T Consensus 335 P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~ 411 (553)
T PRK12370 335 HN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGIT 411 (553)
T ss_pred CC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHH
Confidence 42 566777788888889999999999988765 3 4567788888888999999999999998875 3432 23333
Q ss_pred HHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHH-HHHHHHHHHhhcC
Q 010837 356 ALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSD-VWAALLSSCRLHD 432 (499)
Q Consensus 356 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~-~~~~l~~~~~~~~ 432 (499)
++..+...|++++|...++++... . .| +...+..+..+|...|++++|...++++.. .|+.. ..+.+...|...|
T Consensus 412 ~~~~~~~~g~~eeA~~~~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 412 KLWITYYHTGIDDAIRLGDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHhccCHHHHHHHHHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 444456678899999998887733 1 34 445567778888889999999999988765 34433 3444555566666
Q ss_pred CHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 433 DVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 433 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
++|...++.+.+..-.. ......+...|.-.|+-+.+... +++.+.|
T Consensus 490 --~~a~~~l~~ll~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 490 --ERALPTIREFLESEQRI-DNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred --HHHHHHHHHHHHHhhHh-hcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 47777777766533222 22223366666667776666665 7776654
No 63
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.25 E-value=1.8e-09 Score=104.04 Aligned_cols=97 Identities=14% Similarity=0.077 Sum_probs=71.9
Q ss_pred HHHHHHHHhcCC-CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHh
Q 010837 301 DDARRVFDHMQQ-KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERD 379 (499)
Q Consensus 301 ~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 379 (499)
++-........+ ++..+|.+++..-..+|+.+.|..++.+|.+.|++.+.+-|-.|+-+ .++...++.+++.|. .
T Consensus 189 ekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmq-e 264 (1088)
T KOG4318|consen 189 EKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQ-E 264 (1088)
T ss_pred HHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHH-H
Confidence 333333333333 78888888888888888889999999999888888888877777754 677778888888887 5
Q ss_pred cCCCCChhHHHHHHHHHHhcCC
Q 010837 380 YSMKPKMEHYACMVDLLGRAGS 401 (499)
Q Consensus 380 ~~~~p~~~~~~~l~~~~~~~~~ 401 (499)
.|+.|+..|+...+..+...|.
T Consensus 265 ~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 265 KGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hcCCCCcchhHHHHHhhhcchh
Confidence 5888888888776666655443
No 64
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.25 E-value=5.9e-08 Score=92.61 Aligned_cols=451 Identities=12% Similarity=0.064 Sum_probs=274.1
Q ss_pred ccCCCCCccCCCCcccccccCCCCCcchHH--HHH-HhhhCCCChhhHHHHHH----HHHHhCCCCChHHHHHHHHHHHc
Q 010837 20 YTLVPPNQTFPPKLQNYDSLSNPLTATSLP--SAL-QHYINSDTPFYGLKIHA----HITKTGVKPNTNISIKLLILHLK 92 (499)
Q Consensus 20 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~ll-~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~l~~~~~~ 92 (499)
..|+......+.....+.......+.+.+. .++ ..++...+.+++.-..- ++....+.-|..+|..+.-++.+
T Consensus 256 ~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~ 335 (799)
T KOG4162|consen 256 RSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSR 335 (799)
T ss_pred cccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 355555555665555555433333444332 222 24455566666654433 33334566789999999999999
Q ss_pred CCChhHHHHHhccCCC---CChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCC-ChhhHHHHhhhccccccCCcCcch
Q 010837 93 CGALKYAGQMFDELPQ---RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERP-DGYTFSMILKASTCCRSNVPLPRN 168 (499)
Q Consensus 93 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~~~ 168 (499)
+|+++.+.+.|++... .....|+.+-..|...|.-..|..++++-....-.| |...+-..-+.|. ...+..+
T Consensus 336 ~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~----e~l~~~e 411 (799)
T KOG4162|consen 336 CGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCI----ERLKLVE 411 (799)
T ss_pred HHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHH----hchhhhh
Confidence 9999999999999775 345679999999999999999999999866543234 3444444455553 4455555
Q ss_pred hHHHHHHHHHHc--CC--CCchhHHHHHHHHHHhC-----------CChhHHHHHHHhccCC---ChHhHHHHHHHHHhC
Q 010837 169 LGRMVHAQILKC--DV--KADDVLYTALVDSYVKG-----------GKTSYARIVFDMMLEK---NVICSTSMISGFMSQ 230 (499)
Q Consensus 169 ~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~ 230 (499)
.+..+-...... +. ......|..+.-+|... ....++.+.+++..+. |..+..-+.--|+..
T Consensus 412 egldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lalq~A~~ 491 (799)
T KOG4162|consen 412 EGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLALQYAEQ 491 (799)
T ss_pred hHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 555555555441 11 12233444444444321 1234566666666443 333333444456777
Q ss_pred CCHHHHHHHHHhcCC----CChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHH
Q 010837 231 GFVEDAEEIFRKTVE----KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRV 306 (499)
Q Consensus 231 g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 306 (499)
++++.|.+..++... .+...|..+.-.+... +++.+|+.+.+.....-.. |......-++.-...++.+++...
T Consensus 492 R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~-kr~~~Al~vvd~al~E~~~-N~~l~~~~~~i~~~~~~~e~~l~t 569 (799)
T KOG4162|consen 492 RQLTSALDYAREALALNRGDSAKAWHLLALVLSAQ-KRLKEALDVVDAALEEFGD-NHVLMDGKIHIELTFNDREEALDT 569 (799)
T ss_pred HhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHHhhh-hhhhchhhhhhhhhcccHHHHHHH
Confidence 888888877776652 2344444443333333 6677777777665543111 111111112222234555555443
Q ss_pred HHhcCC------------------------------C--ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC--CC---
Q 010837 307 FDHMQQ------------------------------K--NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ--PN--- 349 (499)
Q Consensus 307 ~~~~~~------------------------------~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~--p~--- 349 (499)
...+.. + .+.++..+..-... +...+..-.. |...-+. |+
T Consensus 570 ~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~--~~~~~~se~~-Lp~s~~~~~~~~~~ 646 (799)
T KOG4162|consen 570 CIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVAS--QLKSAGSELK-LPSSTVLPGPDSLW 646 (799)
T ss_pred HHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHh--hhhhcccccc-cCcccccCCCCchH
Confidence 332221 0 01111111111100 0000000000 1111111 22
Q ss_pred ---HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHH
Q 010837 350 ---YVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAA 423 (499)
Q Consensus 350 ---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~ 423 (499)
...+......+.+.++.++|...+.+.. ++.| ....|......+...|.+++|.+.|..... +.++.+..+
T Consensus 647 ~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~---~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~A 723 (799)
T KOG4162|consen 647 YLLQKLWLLAADLFLLSGNDDEARSCLLEAS---KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTA 723 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCchHHHHHHHHHH---hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHH
Confidence 1234456677888899999998888877 4455 677888888889999999999999988876 445678999
Q ss_pred HHHHHhhcCCHHHHHH--HHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 424 LLSSCRLHDDVEMANI--AANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 424 l~~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+...+.+.|+..-|.. ++.++.+.+|.. +..|..++..+.+.|+.+.|.+.|+...+..
T Consensus 724 la~~lle~G~~~la~~~~~L~dalr~dp~n-~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 724 LAELLLELGSPRLAEKRSLLSDALRLDPLN-HEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HHHHHHHhCCcchHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 9999999998888877 999999999998 9999999999999999999999999877643
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.25 E-value=3.1e-09 Score=105.04 Aligned_cols=213 Identities=11% Similarity=-0.042 Sum_probs=148.7
Q ss_pred ChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHH---------hcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhC
Q 010837 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA---------KCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKN 328 (499)
Q Consensus 261 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 328 (499)
..+..++|...+++..+..+. +...|..+..+|. ..+++++|...++++.+ .+...+..+...+...
T Consensus 273 ~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 273 TPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIH 351 (553)
T ss_pred CHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence 346677888888888776432 3345555554443 22447888888888765 2566777777888888
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHH
Q 010837 329 GNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK-MEHYACMVDLLGRAGSLEQALK 407 (499)
Q Consensus 329 g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~ 407 (499)
|++++|...|++..+.+ +.+...+..+..++...|++++|...+++.. .+.|+ ...+..++..+...|++++|+.
T Consensus 352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al---~l~P~~~~~~~~~~~~~~~~g~~eeA~~ 427 (553)
T PRK12370 352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECL---KLDPTRAAAGITKLWITYYHTGIDDAIR 427 (553)
T ss_pred cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---hcCCCChhhHHHHHHHHHhccCHHHHHH
Confidence 88899999888888753 3345667777788888888999988888887 34553 2233344445666788888888
Q ss_pred HHHhCCC--CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 408 FVLEMPE--KP-NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 408 ~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
.+++... .| +...+..+..++...|+.++|...++++....+.. ....+.+...|...| +.|...++.+.+
T Consensus 428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITG-LIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchh-HHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 8887754 24 34456667777888889898988888876666554 556667777777777 477776766654
No 66
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.22 E-value=6.1e-07 Score=84.06 Aligned_cols=415 Identities=14% Similarity=0.151 Sum_probs=261.9
Q ss_pred HHhhhCCCChhhHHHHHHHHHHh-CCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhH
Q 010837 52 LQHYINSDTPFYGLKIHAHITKT-GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEES 130 (499)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 130 (499)
+......++.......|+..+.. -+.-...+|...+......+-.+-+..++++..+-++..-+..|..+++.+++++|
T Consensus 109 lq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~ea 188 (835)
T KOG2047|consen 109 LQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEA 188 (835)
T ss_pred HHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHH
Confidence 44445667777777777776654 33344567777888888888888999999998888888888899999999999999
Q ss_pred HHHHHHHHHcC------CCCChhhHHHHhhhccccccCCcCcc---hhHHHHHHHHHHcCCCCch--hHHHHHHHHHHhC
Q 010837 131 LSLVRKLVSSG------ERPDGYTFSMILKASTCCRSNVPLPR---NLGRMVHAQILKCDVKADD--VLYTALVDSYVKG 199 (499)
Q Consensus 131 ~~~~~~m~~~g------~~p~~~~~~~ll~~~~~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~ 199 (499)
.+.+....... -+.+-..|..+.... .+..+. -.+..+++.+... -+|. ..|+.|.+.|.+.
T Consensus 189 a~~la~vln~d~f~sk~gkSn~qlw~elcdli-----s~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~ 261 (835)
T KOG2047|consen 189 AQRLATVLNQDEFVSKKGKSNHQLWLELCDLI-----SQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRS 261 (835)
T ss_pred HHHHHHhcCchhhhhhcccchhhHHHHHHHHH-----HhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHh
Confidence 99998876542 133444555544443 222222 2233333333221 2333 4789999999999
Q ss_pred CChhHHHHHHHhccCC--ChHhHHHHHHHHHh----------------CCC------HHHHHHHHHhcCC----------
Q 010837 200 GKTSYARIVFDMMLEK--NVICSTSMISGFMS----------------QGF------VEDAEEIFRKTVE---------- 245 (499)
Q Consensus 200 g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~----------------~g~------~~~a~~~~~~~~~---------- 245 (499)
|.+++|..+|++..+. .+.-++.+..+|++ .|+ ++-.+..|+.+..
T Consensus 262 g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVl 341 (835)
T KOG2047|consen 262 GLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVL 341 (835)
T ss_pred hhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHH
Confidence 9999999999987653 22222222222221 121 2222333333321
Q ss_pred -----CChhhHHHHHHHHhcChhhHHHHHHHHHHHHHc-ccCC----CchhHHHHHHHHHhcCChHHHHHHHHhcCCCCh
Q 010837 246 -----KDIVVYNAMIEGYSISIETARKALEVHCQLIKN-VFFE----DVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV 315 (499)
Q Consensus 246 -----~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 315 (499)
.++..|..-+..+ .++..+....+.++.+. .+.. -...|..+.+.|-..|+++.|..+|++..+-+-
T Consensus 342 LRQn~~nV~eW~kRV~l~---e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y 418 (835)
T KOG2047|consen 342 LRQNPHNVEEWHKRVKLY---EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY 418 (835)
T ss_pred HhcCCccHHHHHhhhhhh---cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc
Confidence 1223333333322 24455666677666654 1111 124677888999999999999999999887332
Q ss_pred -------hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC----------C-------CHHHHHHHHHHHcccCcHHHHHH
Q 010837 316 -------FTWTSMIDGYGKNGNPNQALELFCMMQECCVQ----------P-------NYVTFLGALSACGHAGLVDKGRE 371 (499)
Q Consensus 316 -------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~----------p-------~~~~~~~ll~~~~~~~~~~~a~~ 371 (499)
.+|..-...-.+..+++.|++++++.....-. | +...|+..++.-...|-++....
T Consensus 419 ~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~ 498 (835)
T KOG2047|consen 419 KTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKA 498 (835)
T ss_pred cchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence 34555555666788899999988876532111 1 12335555666666788899999
Q ss_pred HHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CCCH-HHHHHHHHHHhh---cCCHHHHHHHHHHH
Q 010837 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNS-DVWAALLSSCRL---HDDVEMANIAANEI 444 (499)
Q Consensus 372 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~-~~~~~l~~~~~~---~~~~~~a~~~~~~~ 444 (499)
+|+++. +..+. ++.+.-.....+-...-++++.+++++-.. -|++ ..|+..+.-+.+ ....+.|..+|+++
T Consensus 499 vYdrii-dLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 499 VYDRII-DLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHHHH-HHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 999998 33332 222222333344566778999999999887 3554 467766655543 34789999999999
Q ss_pred HhcCCCCCC--chhHHHHHHHHhcCChHHHHHHHHHH
Q 010837 445 FKLNANDRP--GAYVALSNTLAAAGKWDSVTELREKM 479 (499)
Q Consensus 445 ~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 479 (499)
++.-| |.. ..|......-.+.|-...|+.++++.
T Consensus 577 L~~Cp-p~~aKtiyLlYA~lEEe~GLar~amsiyera 612 (835)
T KOG2047|consen 577 LDGCP-PEHAKTIYLLYAKLEEEHGLARHAMSIYERA 612 (835)
T ss_pred HhcCC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 99444 411 12333333334668888889998885
No 67
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.21 E-value=4.9e-07 Score=83.92 Aligned_cols=405 Identities=13% Similarity=0.097 Sum_probs=212.2
Q ss_pred HHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHH-------------------------------
Q 010837 52 LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAG------------------------------- 100 (499)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~------------------------------- 100 (499)
++-+...+++++|.....+++..+ +-+...+..-+-++.+.+++++|+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 334445556666666666665554 333344444344444445555554
Q ss_pred --HHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChh-hHHHHhhhccccccCCcCcchhHHHHHHHH
Q 010837 101 --QMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGY-TFSMILKASTCCRSNVPLPRNLGRMVHAQI 177 (499)
Q Consensus 101 --~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~ 177 (499)
..++...+.+..+...-...+-+.|++++|+++|+.+.+.+..--.. .-..++.+- .+... ..+
T Consensus 98 alk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~------------a~l~~-~~~ 164 (652)
T KOG2376|consen 98 ALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA------------AALQV-QLL 164 (652)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH------------HhhhH-HHH
Confidence 44443333333344444455666777777777777776554221111 111111110 00011 012
Q ss_pred HHcCCCCchhHHHH---HHHHHHhCCChhHHHHHHHhc--------cCCCh----------HhHHHHHHHHHhCCCHHHH
Q 010837 178 LKCDVKADDVLYTA---LVDSYVKGGKTSYARIVFDMM--------LEKNV----------ICSTSMISGFMSQGFVEDA 236 (499)
Q Consensus 178 ~~~~~~~~~~~~~~---l~~~~~~~g~~~~A~~~~~~~--------~~~~~----------~~~~~l~~~~~~~g~~~~a 236 (499)
......| ..+|.. ..-.++..|++.+|+++++.. .+.|. ..--.+.-.+...|+.++|
T Consensus 165 q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 2222223 223333 334456788888888888776 11111 1223355567778889999
Q ss_pred HHHHHhcCC---CChhhHHHHH---HHHhcChhhHH-HHHHHHHH-----------HHHcccCCCchhHHHHHHHHHhcC
Q 010837 237 EEIFRKTVE---KDIVVYNAMI---EGYSISIETAR-KALEVHCQ-----------LIKNVFFEDVKLGSALVDMYAKCG 298 (499)
Q Consensus 237 ~~~~~~~~~---~~~~~~~~ll---~~~~~~~~~~~-~a~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~g 298 (499)
..+|....+ +|...-.... -++.......+ ..+..++. +....-.-....-+.++..| .+
T Consensus 244 ~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tn 321 (652)
T KOG2376|consen 244 SSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TN 321 (652)
T ss_pred HHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hh
Confidence 888887762 3332221111 11211111111 11111111 10000000111112223222 34
Q ss_pred ChHHHHHHHHhcCCCC-hhHHHHHHHHHHh--CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHH-
Q 010837 299 KIDDARRVFDHMQQKN-VFTWTSMIDGYGK--NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFE- 374 (499)
Q Consensus 299 ~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~- 374 (499)
..+.+.++........ ...+.+++....+ .....++.+++...-+....-.....-..++.....|+++.|.+++.
T Consensus 322 k~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~ 401 (652)
T KOG2376|consen 322 KMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSL 401 (652)
T ss_pred hHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5556666666555432 3344444443332 23467778887777664222223455566677788999999999998
Q ss_pred -------HchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-----CCCHH----HHHHHHHHHhhcCCHHHHH
Q 010837 375 -------SMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-----KPNSD----VWAALLSSCRLHDDVEMAN 438 (499)
Q Consensus 375 -------~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~----~~~~l~~~~~~~~~~~~a~ 438 (499)
.+. +.+..| .+...+...+.+.++.+.|..++.+... .+... ++.-+...-.+.|+-++|.
T Consensus 402 ~~~~~~ss~~-~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~ 478 (652)
T KOG2376|consen 402 FLESWKSSIL-EAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS 478 (652)
T ss_pred Hhhhhhhhhh-hhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH
Confidence 555 334444 4556677778888877767666665544 12223 3333334446779999999
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHH
Q 010837 439 IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
.+++++.+.++.. ..+...++.+|++. +.+.|..+-+.
T Consensus 479 s~leel~k~n~~d-~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 479 SLLEELVKFNPND-TDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHhCCch-HHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 9999999988887 88999999999887 56777766443
No 68
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.21 E-value=1.3e-09 Score=98.46 Aligned_cols=89 Identities=17% Similarity=0.072 Sum_probs=44.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHcc
Q 010837 287 GSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP-NYVTFLGALSACGH 362 (499)
Q Consensus 287 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~ 362 (499)
|..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|...|++..+. .| +..++..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 44444445555555555555554442 13445555555555555555555555555442 22 23344444444555
Q ss_pred cCcHHHHHHHHHHch
Q 010837 363 AGLVDKGREIFESME 377 (499)
Q Consensus 363 ~~~~~~a~~~~~~~~ 377 (499)
.|++++|.+.++...
T Consensus 145 ~g~~~eA~~~~~~al 159 (296)
T PRK11189 145 GGRYELAQDDLLAFY 159 (296)
T ss_pred CCCHHHHHHHHHHHH
Confidence 555555555555554
No 69
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=1.4e-08 Score=87.96 Aligned_cols=415 Identities=10% Similarity=0.051 Sum_probs=242.0
Q ss_pred HHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHHHHHhCCChh
Q 010837 52 LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIAGYLKNGQVE 128 (499)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 128 (499)
+.-+...+++..|..+++.-...+-.-...+-.-+...+.+.|++++|...++.+.+ ++...+-.|.-++.-.|.+.
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence 455566789999999988766544322223333345556788999999999987764 45566666776667778888
Q ss_pred hHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHH
Q 010837 129 ESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIV 208 (499)
Q Consensus 129 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 208 (499)
+|..+-+...+ +..--..++... .+.++.+.-..+++.+.+. ..--.+|..+....-.+.+|+++
T Consensus 109 eA~~~~~ka~k-----~pL~~RLlfhla-----hklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdv 173 (557)
T KOG3785|consen 109 EAKSIAEKAPK-----TPLCIRLLFHLA-----HKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDV 173 (557)
T ss_pred HHHHHHhhCCC-----ChHHHHHHHHHH-----HHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHH
Confidence 88877665422 222233333333 4555555555555554332 12233444444445578999999
Q ss_pred HHhccCCCh--HhHHH-HHHHHHhCCCHHHHHHHHHhcC--CCChhh-HHHHHHHHhcC-hhhHHHHHH-----------
Q 010837 209 FDMMLEKNV--ICSTS-MISGFMSQGFVEDAEEIFRKTV--EKDIVV-YNAMIEGYSIS-IETARKALE----------- 270 (499)
Q Consensus 209 ~~~~~~~~~--~~~~~-l~~~~~~~g~~~~a~~~~~~~~--~~~~~~-~~~ll~~~~~~-~~~~~~a~~----------- 270 (499)
+.++...+. ...|. +.-+|.+..-++-+.++++--. -||... -|.......+. .|. .|.+
T Consensus 174 YkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr--~ae~E~k~ladN~~~ 251 (557)
T KOG3785|consen 174 YKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGR--TAEDEKKELADNIDQ 251 (557)
T ss_pred HHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccc--hhHHHHHHHHhcccc
Confidence 999877543 23333 4456677777777766665443 233322 22111111111 010 1111
Q ss_pred ---HHHHHHHccc------------CCC-----chhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCC
Q 010837 271 ---VHCQLIKNVF------------FED-----VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGN 330 (499)
Q Consensus 271 ---~~~~~~~~~~------------~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~ 330 (499)
..+.+.+.+. -|. +..-..|+-.|.+.+++.+|..+.+.+...++.-|-.-.-.++..|+
T Consensus 252 ~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQ 331 (557)
T KOG3785|consen 252 EYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQ 331 (557)
T ss_pred cchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhh
Confidence 1112222110 010 11112344457888899999988888765555444433333444333
Q ss_pred -------hhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCH
Q 010837 331 -------PNQALELFCMMQECCVQPNYV-TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402 (499)
Q Consensus 331 -------~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 402 (499)
..-|...|+-.-+.+..-|.. .--++..++.-..+++++..++..+. .+-...|...+ .+..+++..|.+
T Consensus 332 e~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~-sYF~NdD~Fn~-N~AQAk~atgny 409 (557)
T KOG3785|consen 332 ETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE-SYFTNDDDFNL-NLAQAKLATGNY 409 (557)
T ss_pred hcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchhhh-HHHHHHHHhcCh
Confidence 333444444443333333322 12234445555568889999888887 43333444444 478899999999
Q ss_pred HHHHHHHHhCCCC--CCHHHHHHH-HHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHH
Q 010837 403 EQALKFVLEMPEK--PNSDVWAAL-LSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479 (499)
Q Consensus 403 ~~a~~~~~~~~~~--~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 479 (499)
.+|.++|-.+... .|..+|.++ .++|.+.+..+.|..++-++. .+.........+.+-|.+.+.+--|.+.|+.+
T Consensus 410 ~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~--t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~l 487 (557)
T KOG3785|consen 410 VEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN--TPSERFSLLQLIANDCYKANEFYYAAKAFDEL 487 (557)
T ss_pred HHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC--CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 9999999888762 455666654 567788999998866554332 22222355666778889999999999999988
Q ss_pred HhCCCccC
Q 010837 480 KLRGVLKD 487 (499)
Q Consensus 480 ~~~~~~~~ 487 (499)
...+..|.
T Consensus 488 E~lDP~pE 495 (557)
T KOG3785|consen 488 EILDPTPE 495 (557)
T ss_pred HccCCCcc
Confidence 77655444
No 70
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.20 E-value=4.1e-07 Score=87.15 Aligned_cols=414 Identities=14% Similarity=0.085 Sum_probs=253.2
Q ss_pred HHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC--CChHH-HHHHHHHHHhC--
Q 010837 50 SALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ--RTLSA-YNYMIAGYLKN-- 124 (499)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~~li~~~~~~-- 124 (499)
-....+...|++++|++.++.-.+. +.............+.+.|+.++|...+..+.. |+... |..+..+..-.
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcc
Confidence 3445667889999999999875544 345567778888899999999999999999985 44444 44455544222
Q ss_pred ---CChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCC
Q 010837 125 ---GQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK 201 (499)
Q Consensus 125 ---g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 201 (499)
.+.+...++|+++... -|.......+.-.+. ....-...+..+...+...|+++ +|+.|-..|.....
T Consensus 88 ~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~----~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K 158 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFL----EGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEK 158 (517)
T ss_pred cccccHHHHHHHHHHHHHh--CccccchhHhhcccC----CHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhH
Confidence 3567788899988776 354444433322220 21222345666777777788544 56666666665555
Q ss_pred hhHHHHHHHhccC------------------CCh--HhHHHHHHHHHhCCCHHHHHHHHHhcC--CCChhhHHHHHHHHh
Q 010837 202 TSYARIVFDMMLE------------------KNV--ICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIVVYNAMIEGYS 259 (499)
Q Consensus 202 ~~~A~~~~~~~~~------------------~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~ 259 (499)
.+-..+++..... |.. .++.-+...|-..|++++|+++.++.+ .|+.+-+-.+-.-+.
T Consensus 159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~Karil 238 (517)
T PF12569_consen 159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence 5555555555311 122 245667788899999999999999887 566555555555556
Q ss_pred cChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChh----------HH--HHHHHHHHh
Q 010837 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF----------TW--TSMIDGYGK 327 (499)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------~~--~~l~~~~~~ 327 (499)
+..|+..+|...++...+... .|..+-+..+..+.++|++++|..++....+++.. .| .....+|.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r 317 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLR 317 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHH
Confidence 666999999999999988765 36777778889999999999999999888765411 22 334678889
Q ss_pred CCChhHHHHHHHHHHHc-----CCCCCHHHH----------HHHHHHHccc---C----cHHHHHHHHHHchHhcCCCCC
Q 010837 328 NGNPNQALELFCMMQEC-----CVQPNYVTF----------LGALSACGHA---G----LVDKGREIFESMERDYSMKPK 385 (499)
Q Consensus 328 ~g~~~~a~~~~~~m~~~-----~~~p~~~~~----------~~ll~~~~~~---~----~~~~a~~~~~~~~~~~~~~p~ 385 (499)
.|++..|++.|....+. .-+-|-++| ..++...-+. . -...|.++|-.+..+......
T Consensus 318 ~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc~RK~t~r~Y~~~L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~~~~~~ 397 (517)
T PF12569_consen 318 QGDYGLALKRFHAVLKHFDDFEEDQFDFHSYCLRKMTLRAYVDMLRWEDKLRSHPFYRRAAKGAIRIYLELHDKPEAKQG 397 (517)
T ss_pred HhhHHHHHHHHHHHHHHHHHHhcccccHHHHHHhhccHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCcccccc
Confidence 99999888776665432 113333333 2333221111 1 112344444444321110000
Q ss_pred -----------hhHHHHHHHHH---HhcCCHHHHHHHHHh-----------CCC----CCCHHHHHHHHHHHhhcC-CHH
Q 010837 386 -----------MEHYACMVDLL---GRAGSLEQALKFVLE-----------MPE----KPNSDVWAALLSSCRLHD-DVE 435 (499)
Q Consensus 386 -----------~~~~~~l~~~~---~~~~~~~~a~~~~~~-----------~~~----~~~~~~~~~l~~~~~~~~-~~~ 435 (499)
..--..+..-. .+...-+++.+.-.+ ... +.|... +..-+.+.. =.+
T Consensus 398 ~~~~~~~~~~~~~e~Kk~~kK~kK~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Dp---~GekL~~t~dPLe 474 (517)
T PF12569_consen 398 EEQEADNENMSAAERKKAKKKAKKAAKKAKKEEAEKAAKKEPKKQQNKSKKKEKVEPKKKDDDP---LGEKLLKTEDPLE 474 (517)
T ss_pred cccccccccCChHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhccccccccccCCcCCCCc---cHHHHhcCCcHHH
Confidence 00000000000 011111111111100 000 111111 122233444 468
Q ss_pred HHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHH
Q 010837 436 MANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 436 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
+|.++++-+.+..++. ..+|..-..+|.+.|++-.|.+.+.+
T Consensus 475 ~A~kfl~pL~~~a~~~-~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 475 EAMKFLKPLLELAPDN-IETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHHHhCccc-hhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 8999999999999987 99999999999999999999887754
No 71
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=8.7e-07 Score=78.70 Aligned_cols=292 Identities=13% Similarity=0.032 Sum_probs=203.5
Q ss_pred CCCchhHHHHHHHHHH--hCCChhHHHHHHHhc-----cCCChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCChh---
Q 010837 182 VKADDVLYTALVDSYV--KGGKTSYARIVFDMM-----LEKNVICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIV--- 249 (499)
Q Consensus 182 ~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~--- 249 (499)
++|...+...-+.+++ -.++...|...+-.+ ...|+.....+...+...|+.++|...|++.. .|+..
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 3444444444444443 345544554444333 22488999999999999999999999999876 45433
Q ss_pred -hHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---ChhHHHHHHHHH
Q 010837 250 -VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---NVFTWTSMIDGY 325 (499)
Q Consensus 250 -~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~ 325 (499)
.|..++. ..|+.+....+...+....-. +...|..-........+++.|+.+-++..+. ++..+-.-...+
T Consensus 270 D~Ya~LL~----~eg~~e~~~~L~~~Lf~~~~~-ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL 344 (564)
T KOG1174|consen 270 DLYAVLLG----QEGGCEQDSALMDYLFAKVKY-TASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLL 344 (564)
T ss_pred HHHHHHHH----hccCHhhHHHHHHHHHhhhhc-chhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHH
Confidence 3444443 336666666666666554311 1222222233345667899999998887764 445555556788
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHH-HHH-HhcCCHH
Q 010837 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMV-DLL-GRAGSLE 403 (499)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~-~~~~~~~ 403 (499)
...|+.++|.-.|+..+.. -+-+...|..|+.+|...|++.+|.-.-+..... +.-+..+...+. ..+ ..-..-+
T Consensus 345 ~~~~R~~~A~IaFR~Aq~L-ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rE 421 (564)
T KOG1174|consen 345 IALERHTQAVIAFRTAQML-APYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMRE 421 (564)
T ss_pred HhccchHHHHHHHHHHHhc-chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHH
Confidence 8899999999999998774 2457789999999999999999999888777632 233445544442 222 2334457
Q ss_pred HHHHHHHhCCC-CCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 404 QALKFVLEMPE-KPNS-DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 404 ~a~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+|.+++++... +|+- ...+.+...|...|..+.++.++++.+...++. ...+.|+..+.....+.+|...|.....
T Consensus 422 KAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~--~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 422 KAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV--NLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc--HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 89999998876 5654 567777888999999999999999998876654 8889999999999999999998887665
Q ss_pred CC
Q 010837 482 RG 483 (499)
Q Consensus 482 ~~ 483 (499)
.+
T Consensus 500 ~d 501 (564)
T KOG1174|consen 500 QD 501 (564)
T ss_pred cC
Confidence 43
No 72
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.19 E-value=1.7e-07 Score=87.73 Aligned_cols=437 Identities=12% Similarity=0.070 Sum_probs=271.2
Q ss_pred CcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCC---ChHHHHHHHHH
Q 010837 44 TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQR---TLSAYNYMIAG 120 (499)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~ 120 (499)
...-|..+++.| ..+++...+...+.+.+ +.+-...+.....-.+...|+-++|......-... +.++|..+.-.
T Consensus 7 E~~lF~~~lk~y-E~kQYkkgLK~~~~iL~-k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~ 84 (700)
T KOG1156|consen 7 ENALFRRALKCY-ETKQYKKGLKLIKQILK-KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLL 84 (700)
T ss_pred HHHHHHHHHHHH-HHHHHHhHHHHHHHHHH-hCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHH
Confidence 334455666544 67788888888888887 44445556555555667789999999988876653 45678888888
Q ss_pred HHhCCChhhHHHHHHHHHHcCCCCChh-hHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhC
Q 010837 121 YLKNGQVEESLSLVRKLVSSGERPDGY-TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKG 199 (499)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (499)
+-...++++|++.|...... .||.. .+.-+--.- .+.++.+..........+.. +.....|..++.++.-.
T Consensus 85 ~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ-----~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~ 156 (700)
T KOG1156|consen 85 QRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQ-----IQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLL 156 (700)
T ss_pred HhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH-----HHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHH
Confidence 88889999999999998875 44443 332211111 45555565555555555432 23344677788888888
Q ss_pred CChhHHHHHHHhccC-----CChHhHHH------HHHHHHhCCCHHHHHHHHHhcCC--CChhhHHHHHHHHhcChhhHH
Q 010837 200 GKTSYARIVFDMMLE-----KNVICSTS------MISGFMSQGFVEDAEEIFRKTVE--KDIVVYNAMIEGYSISIETAR 266 (499)
Q Consensus 200 g~~~~A~~~~~~~~~-----~~~~~~~~------l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~ 266 (499)
|+...|..+.+...+ ++...+.. -.....+.|..++|++.+..-.. -|...+...-..+....+..+
T Consensus 157 g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lE 236 (700)
T KOG1156|consen 157 GEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLE 236 (700)
T ss_pred HHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHH
Confidence 999999888877743 22222222 22446778888888888766542 233444433333444448888
Q ss_pred HHHHHHHHHHHcccCCCch-hHHHHHHHHHhcCChHHHH-HHHHhcCCC--Chh-HHHHHHHHHHhCCChhHHHHHHHHH
Q 010837 267 KALEVHCQLIKNVFFEDVK-LGSALVDMYAKCGKIDDAR-RVFDHMQQK--NVF-TWTSMIDGYGKNGNPNQALELFCMM 341 (499)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~-~~~~~~~~~--~~~-~~~~l~~~~~~~g~~~~a~~~~~~m 341 (499)
+|..++..++..+ ||.. .|-.+..++.+-.+.-++. .+|....+. -.. .-..=+.......-.+..-+++..+
T Consensus 237 eA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~ 314 (700)
T KOG1156|consen 237 EAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPL 314 (700)
T ss_pred hHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHH
Confidence 9999999988875 4444 4444455554333333333 666655431 000 0000011111122234455667777
Q ss_pred HHcCCCCCHHHHHHHHHHHcccCcHHH----HHHHHHHchHhcCC----------CCCh--hHHHHHHHHHHhcCCHHHH
Q 010837 342 QECCVQPNYVTFLGALSACGHAGLVDK----GREIFESMERDYSM----------KPKM--EHYACMVDLLGRAGSLEQA 405 (499)
Q Consensus 342 ~~~~~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~----------~p~~--~~~~~l~~~~~~~~~~~~a 405 (499)
.+.|+++--..+.++ |-.....+- +..+...+. ..|. +|+. .++..++..|-+.|+++.|
T Consensus 315 l~Kg~p~vf~dl~SL---yk~p~k~~~le~Lvt~y~~~L~-~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A 390 (700)
T KOG1156|consen 315 LSKGVPSVFKDLRSL---YKDPEKVAFLEKLVTSYQHSLS-GTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVA 390 (700)
T ss_pred hhcCCCchhhhhHHH---HhchhHhHHHHHHHHHHHhhcc-cccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHH
Confidence 888876543333333 222111111 112222221 1111 3443 3455678889999999999
Q ss_pred HHHHHhCCC-CCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 406 LKFVLEMPE-KPNS-DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 406 ~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
..+++.... .|+. ..|..-.+.+...|+.++|..++++..+.+-.+ ..+-..-+....++.+.++|.++...+.+.|
T Consensus 391 ~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aD-R~INsKcAKYmLrAn~i~eA~~~~skFTr~~ 469 (700)
T KOG1156|consen 391 LEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTAD-RAINSKCAKYMLRANEIEEAEEVLSKFTREG 469 (700)
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchh-HHHHHHHHHHHHHccccHHHHHHHHHhhhcc
Confidence 999999987 3554 456666688899999999999999999888766 4444467777889999999999999888777
Q ss_pred C-----ccCccccccccCC
Q 010837 484 V-----LKDTGCSWVGTES 497 (499)
Q Consensus 484 ~-----~~~~~~~~~~~~~ 497 (499)
. -.+..|.|.+++.
T Consensus 470 ~~~~~~L~~mqcmWf~~E~ 488 (700)
T KOG1156|consen 470 FGAVNNLAEMQCMWFQLED 488 (700)
T ss_pred cchhhhHHHhhhHHHhHhh
Confidence 4 2346677877654
No 73
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.19 E-value=8.4e-09 Score=90.50 Aligned_cols=195 Identities=19% Similarity=0.157 Sum_probs=129.7
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHh
Q 010837 217 VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK 296 (499)
Q Consensus 217 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 296 (499)
...+..+...+...|++++|.+.+++..+ .. +.+...+..+...|..
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~--------------------------------~~-p~~~~~~~~la~~~~~ 77 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALE--------------------------------HD-PDDYLAYLALALYYQQ 77 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--------------------------------hC-cccHHHHHHHHHHHHH
Confidence 45666777777777777777777765531 11 1123344555666777
Q ss_pred cCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHcccCcHHHHHHH
Q 010837 297 CGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQ-PNYVTFLGALSACGHAGLVDKGREI 372 (499)
Q Consensus 297 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~ 372 (499)
.|++++|...+++..+ .+...+..+...+...|++++|.+.+++..+.... .....+..+..++...|++++|...
T Consensus 78 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 157 (234)
T TIGR02521 78 LGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKY 157 (234)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 7777777777776653 24456666677777778888888887777654222 2334555666777788888888888
Q ss_pred HHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Q 010837 373 FESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447 (499)
Q Consensus 373 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 447 (499)
+++.... .| +...+..+...+...|++++|.+.+++... +.+...+..++..+...|+.++|..+.+.+...
T Consensus 158 ~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 158 LTRALQI---DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHh---CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 8877732 33 455677777788888888888888877654 344556666677777788888888877766554
No 74
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=1.7e-09 Score=92.41 Aligned_cols=225 Identities=12% Similarity=0.044 Sum_probs=179.4
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHh
Q 010837 251 YNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGK 327 (499)
Q Consensus 251 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~ 327 (499)
|..-+..|.-..|...+|...++..++... -+.||..|-++|.+..+.+.|+.+|.+-.+ | |+.....+...+-.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q~~--~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQFP--HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhcCC--chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 444444444444777788888877777654 455677788889999999999999988775 3 44445566777888
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHH
Q 010837 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALK 407 (499)
Q Consensus 328 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 407 (499)
.++.++|.++|+...+.. +.+.....++...|.-.++++-|..+|+++. +.|+ -+...|+.+.-+|.-.+++|-++.
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiL-qmG~-~speLf~NigLCC~yaqQ~D~~L~ 379 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRIL-QMGA-QSPELFCNIGLCCLYAQQIDLVLP 379 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHH-HhcC-CChHHHhhHHHHHHhhcchhhhHH
Confidence 899999999999988763 5566677777778888899999999999998 5565 456778888888888999999998
Q ss_pred HHHhCCC---CCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 408 FVLEMPE---KPN--SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 408 ~~~~~~~---~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
-|.+... +|+ ...|-.+.......||+..|.+.|+-.+..+++. ...++.|...-.+.|++++|..+++....
T Consensus 380 sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h-~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 380 SFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH-GEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred HHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch-HHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 8887765 233 4678888888899999999999999999998888 88999999999999999999999988765
No 75
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.15 E-value=1e-06 Score=82.75 Aligned_cols=424 Identities=11% Similarity=0.031 Sum_probs=266.5
Q ss_pred CcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC---CCChHHHHHHHHH
Q 010837 44 TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP---QRTLSAYNYMIAG 120 (499)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~ 120 (499)
-.+++....-.+...|+-++|........+.+ .-+.+.|..+.-.+....++++|++.|.... +.|...|.-+--.
T Consensus 40 HgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslL 118 (700)
T KOG1156|consen 40 HGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLL 118 (700)
T ss_pred cchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 34445554455667889999999988887755 4567788888878888899999999998765 3466677777766
Q ss_pred HHhCCChhhHHHHHHHHHHcCCCCCh-hhHHHHhhhccccccCCcCcchhHHHHHHHHHHcC-CCCchhHHHHHH-----
Q 010837 121 YLKNGQVEESLSLVRKLVSSGERPDG-YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD-VKADDVLYTALV----- 193 (499)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~----- 193 (499)
-++.|+++.....-..+.+. .|+. ..|.....+. ...++...|..+.+...+.. -.|+...|....
T Consensus 119 Q~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~-----~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~ 191 (700)
T KOG1156|consen 119 QIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQ-----HLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQ 191 (700)
T ss_pred HHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHH
Confidence 77788888888888877775 3443 4555555555 67778888888888887765 245655554332
Q ss_pred -HHHHhCCChhHHHHHHHhccCC--C-hHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCChhhHHHHHHHHh-cChhhHH
Q 010837 194 -DSYVKGGKTSYARIVFDMMLEK--N-VICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIVVYNAMIEGYS-ISIETAR 266 (499)
Q Consensus 194 -~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~-~~~~~~~ 266 (499)
......|.+++|.+.+...... | ...-.+-...+.+.++.++|..++..+. .||...|...+..+. +..+..+
T Consensus 192 n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~ 271 (700)
T KOG1156|consen 192 NQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLE 271 (700)
T ss_pred HHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHH
Confidence 3445678888888877766543 2 2333455677889999999999999987 566666666555544 3434443
Q ss_pred HHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC-ChhHHHHHHHHHHhCCChhHHHHHHHHHHH--
Q 010837 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK-NVFTWTSMIDGYGKNGNPNQALELFCMMQE-- 343 (499)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-- 343 (499)
....++....+.-....... ..=+....-..-.+....++..+.+. -+.++..+...|-.-...+-..++...+..
T Consensus 272 ~lk~ly~~ls~~y~r~e~p~-Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L 350 (700)
T KOG1156|consen 272 ALKALYAILSEKYPRHECPR-RLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSL 350 (700)
T ss_pred HHHHHHHHHhhcCcccccch-hccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhc
Confidence 33355555544321111100 00011111111112222333333332 233444444443322222211122222111
Q ss_pred --cC----------CCCCHH--HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHH
Q 010837 344 --CC----------VQPNYV--TFLGALSACGHAGLVDKGREIFESMERDYSMKPK-MEHYACMVDLLGRAGSLEQALKF 408 (499)
Q Consensus 344 --~~----------~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 408 (499)
.| -+|... |+-.+...+-+.|+++.|..+++... +-.|+ +..|-.-.+.+...|++++|..+
T Consensus 351 ~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~ 427 (700)
T KOG1156|consen 351 SGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAW 427 (700)
T ss_pred ccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHH
Confidence 11 144443 45567788899999999999999998 55775 45666667889999999999999
Q ss_pred HHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-----C-CchhH--HHHHHHHhcCChHHHHHHHHH
Q 010837 409 VLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND-----R-PGAYV--ALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 409 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~-~~~~~--~l~~~~~~~g~~~~A~~~~~~ 478 (499)
+++..+ .+|...-.-...-..+.++.++|.+++....+.|... + .-.|. .=+.+|.+.|++.+|++-|..
T Consensus 428 l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~ 507 (700)
T KOG1156|consen 428 LDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHE 507 (700)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhh
Confidence 999887 4665555566667788899999999999988877522 0 11122 235567888888877765544
Q ss_pred H
Q 010837 479 M 479 (499)
Q Consensus 479 ~ 479 (499)
+
T Consensus 508 i 508 (700)
T KOG1156|consen 508 I 508 (700)
T ss_pred H
Confidence 3
No 76
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.15 E-value=2.6e-09 Score=91.39 Aligned_cols=227 Identities=15% Similarity=0.102 Sum_probs=187.5
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcC--CCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcC
Q 010837 221 TSMISGFMSQGFVEDAEEIFRKTV--EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG 298 (499)
Q Consensus 221 ~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 298 (499)
+.+.++|.+.|-+.+|.+.|+... .|-+.||..+-+.|.+. +..+.|+.++.+-.+.- +-++....-+.+.+...+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ri-dQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRI-DQPERALLVIGEGLDSF-PFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHh-ccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHHHHH
Confidence 568899999999999999998876 56778888888888666 78889999988877753 234444455778888899
Q ss_pred ChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHH
Q 010837 299 KIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES 375 (499)
Q Consensus 299 ~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 375 (499)
+.++|.++|+...+. ++.....+...|.-.|+++.|+..|+++.+.|+. +...|+.+.-+|.-.++++-+..-|.+
T Consensus 305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 999999999998763 5666777778888999999999999999999854 677888888899999999999999988
Q ss_pred chHhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 376 MERDYSMKP--KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 376 ~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.... --.| -..+|..|.......|++..|.+.|+-... ..+...++.|.-.-.+.|+.++|..+++.+.+..|..
T Consensus 384 Alst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m 462 (478)
T KOG1129|consen 384 ALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDM 462 (478)
T ss_pred HHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccc
Confidence 8733 3334 355788888888899999999999998876 3456789999988999999999999999998887765
No 77
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.13 E-value=1.4e-08 Score=95.95 Aligned_cols=245 Identities=14% Similarity=0.127 Sum_probs=149.8
Q ss_pred hhHHHHhhhccccccCCcCcchhHHHHHHHHHHc-----CC-CCchh-HHHHHHHHHHhCCChhHHHHHHHhccCC----
Q 010837 147 YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC-----DV-KADDV-LYTALVDSYVKGGKTSYARIVFDMMLEK---- 215 (499)
Q Consensus 147 ~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 215 (499)
.+...+-..| ...++++.|..+++..++. |. .|... ..+.+...|...+++++|..+|+++..-
T Consensus 200 ~~~~~La~~y-----~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~ 274 (508)
T KOG1840|consen 200 RTLRNLAEMY-----AVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV 274 (508)
T ss_pred HHHHHHHHHH-----HHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 4566677777 8888889888888877664 21 23333 3445778899999999999999988441
Q ss_pred -------ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCc-hhH
Q 010837 216 -------NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDV-KLG 287 (499)
Q Consensus 216 -------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 287 (499)
-..+++.|..+|.+.|++++|...+++ |..+++..... ..|.+ ..+
T Consensus 275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~-------------------------Al~I~~~~~~~-~~~~v~~~l 328 (508)
T KOG1840|consen 275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCER-------------------------ALEIYEKLLGA-SHPEVAAQL 328 (508)
T ss_pred cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHH-------------------------HHHHHHHhhcc-ChHHHHHHH
Confidence 135778888899999999999888774 33333331110 11111 123
Q ss_pred HHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHH
Q 010837 288 SALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367 (499)
Q Consensus 288 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 367 (499)
+.+...+...+++++|..+++.. .+++..........-..+++.+...|.+.|+++
T Consensus 329 ~~~~~~~~~~~~~Eea~~l~q~a------------------------l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ 384 (508)
T KOG1840|consen 329 SELAAILQSMNEYEEAKKLLQKA------------------------LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYK 384 (508)
T ss_pred HHHHHHHHHhcchhHHHHHHHHH------------------------HHHHHhhccccchHHHHHHHHHHHHHHHhcchh
Confidence 33444555556666665555422 112211110000011235666666666667777
Q ss_pred HHHHHHHHchHhc----C-CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--------CCCH-HHHHHHHHHHhhcC
Q 010837 368 KGREIFESMERDY----S-MKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--------KPNS-DVWAALLSSCRLHD 432 (499)
Q Consensus 368 ~a~~~~~~~~~~~----~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~-~~~~~l~~~~~~~~ 432 (499)
+|.++++++.+.. + ..+ ....++.|...|.+.+++++|.++|.+... .|+. .+|..|...|...|
T Consensus 385 ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g 464 (508)
T KOG1840|consen 385 EAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQG 464 (508)
T ss_pred HHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcc
Confidence 6666666665432 1 112 233556677777777777777777766543 2333 57888888888888
Q ss_pred CHHHHHHHHHHHHh
Q 010837 433 DVEMANIAANEIFK 446 (499)
Q Consensus 433 ~~~~a~~~~~~~~~ 446 (499)
+++.|.++.+.+..
T Consensus 465 ~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 465 NYEAAEELEEKVLN 478 (508)
T ss_pred cHHHHHHHHHHHHH
Confidence 88888888877763
No 78
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.10 E-value=1.3e-07 Score=90.53 Aligned_cols=282 Identities=15% Similarity=0.081 Sum_probs=187.5
Q ss_pred HHHHhCCChhHHHHHHHhccCC--C-hHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCChhhHHHHHHHHh----c-Chh
Q 010837 194 DSYVKGGKTSYARIVFDMMLEK--N-VICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIVVYNAMIEGYS----I-SIE 263 (499)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~----~-~~~ 263 (499)
..+...|++++|++.++.-... | ..........+.+.|+.++|..+|..+. .|+...|-..+..+. . ...
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhcccccc
Confidence 4567789999999988776543 3 3455667788899999999999999887 566666655555543 1 223
Q ss_pred hHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChH-HHHHHHHhcCCCCh-hHHHHHHHHHHhCCChhHHHHHHHHH
Q 010837 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKID-DARRVFDHMQQKNV-FTWTSMIDGYGKNGNPNQALELFCMM 341 (499)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m 341 (499)
..+...++++++...-+. ......+.-.+..-..+. .+...+..+....+ .+|+.+-..|....+.+-..+++...
T Consensus 92 ~~~~~~~~y~~l~~~yp~--s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 92 DVEKLLELYDELAEKYPR--SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cHHHHHHHHHHHHHhCcc--ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 456677778777665432 222222211122212222 23334444444443 45565655565444445555555554
Q ss_pred HHc----C----------CCCCH--HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHHHHhcCCHHH
Q 010837 342 QEC----C----------VQPNY--VTFLGALSACGHAGLVDKGREIFESMERDYSMKPK-MEHYACMVDLLGRAGSLEQ 404 (499)
Q Consensus 342 ~~~----~----------~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~ 404 (499)
... + -+|.. .++..+.+.|...|++++|.+++++.+ ...|+ +..|..-.+.|-+.|++++
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI---~htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAI---EHTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH---hcCCCcHHHHHHHHHHHHHCCCHHH
Confidence 332 1 12333 345666778889999999999999998 34674 7788888999999999999
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCc--------hhHHHHHHHHhcCChHHHHH
Q 010837 405 ALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPG--------AYVALSNTLAAAGKWDSVTE 474 (499)
Q Consensus 405 a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~g~~~~A~~ 474 (499)
|.+.++.... ..|...-+-.+..+.+.|+.++|.+++....+.+..+... .....+.+|.+.|++..|++
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999998876 4566667777788899999999999999988877544222 22457788999999999987
Q ss_pred HHHHHH
Q 010837 475 LREKMK 480 (499)
Q Consensus 475 ~~~~~~ 480 (499)
.+..+.
T Consensus 327 ~~~~v~ 332 (517)
T PF12569_consen 327 RFHAVL 332 (517)
T ss_pred HHHHHH
Confidence 776554
No 79
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.3e-07 Score=87.11 Aligned_cols=268 Identities=12% Similarity=0.020 Sum_probs=199.9
Q ss_pred CCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCC---hHhHHHHHHHHHhCCCHHHHHHHHHhcCC--C-ChhhHHHH
Q 010837 181 DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKN---VICSTSMISGFMSQGFVEDAEEIFRKTVE--K-DIVVYNAM 254 (499)
Q Consensus 181 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l 254 (499)
|..-+........+-+...+++.+..++++.+.+.+ ...+..-|.++...|+..+-..+=.++++ | ...+|-++
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aV 318 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAV 318 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhH
Confidence 345566667777788888999999999999987754 44566667788889988887777777762 4 34566655
Q ss_pred HHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCh
Q 010837 255 IEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNP 331 (499)
Q Consensus 255 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~ 331 (499)
---|... +..++|.+.|......... =...|-.....|+-.|.-|+|...+..+.+ ....-+--+..-|.+.++.
T Consensus 319 g~YYl~i-~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~ 396 (611)
T KOG1173|consen 319 GCYYLMI-GKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNL 396 (611)
T ss_pred HHHHHHh-cCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccH
Confidence 5444444 7777999999877654322 134677788889999999999988877654 1222223345567888999
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhc-CC---CC-ChhHHHHHHHHHHhcCCHHHHH
Q 010837 332 NQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDY-SM---KP-KMEHYACMVDLLGRAGSLEQAL 406 (499)
Q Consensus 332 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~a~ 406 (499)
+.|.+.|.+.... .+.|+...+-+.-.....+.+.+|..+|+...... .+ .+ ...+++.|..+|.+.+++++|+
T Consensus 397 kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI 475 (611)
T KOG1173|consen 397 KLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI 475 (611)
T ss_pred HHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence 9999999988774 35566777777776777889999999998776211 00 11 3346888999999999999999
Q ss_pred HHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 407 KFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 407 ~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
..+++... +.+..++.++.-.|...|+++.|.+.|.+.+-..|..
T Consensus 476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 99998876 5688899999999999999999999999998887766
No 80
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.05 E-value=5.7e-08 Score=79.44 Aligned_cols=173 Identities=18% Similarity=0.170 Sum_probs=150.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHH
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDL 395 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~ 395 (499)
+...+..+|...|+...|..-+++..+.. +.+..++..+...|.+.|..+.|.+.|+... .+.| +..+.|...-.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAl---sl~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKAL---SLAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHH---hcCCCccchhhhhhHH
Confidence 45567788999999999999999999863 4455688899999999999999999999998 5677 67888999999
Q ss_pred HHhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHH
Q 010837 396 LGRAGSLEQALKFVLEMPEKPN----SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471 (499)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 471 (499)
+|..|++++|...|++....|+ ..+|..+.-+..+.|+.+.|...|++.++.++.. +.+...+.+...+.|++..
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~-~~~~l~~a~~~~~~~~y~~ 191 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQF-PPALLELARLHYKAGDYAP 191 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCC-ChHHHHHHHHHHhcccchH
Confidence 9999999999999999988554 4688899888899999999999999999999998 8999999999999999999
Q ss_pred HHHHHHHHHhCCCccCcccccccc
Q 010837 472 VTELREKMKLRGVLKDTGCSWVGT 495 (499)
Q Consensus 472 A~~~~~~~~~~~~~~~~~~~~~~~ 495 (499)
|...+++....+. +.....|+.+
T Consensus 192 Ar~~~~~~~~~~~-~~A~sL~L~i 214 (250)
T COG3063 192 ARLYLERYQQRGG-AQAESLLLGI 214 (250)
T ss_pred HHHHHHHHHhccc-ccHHHHHHHH
Confidence 9999999987776 6665666544
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.01 E-value=6.9e-07 Score=77.73 Aligned_cols=121 Identities=8% Similarity=0.128 Sum_probs=72.2
Q ss_pred HHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCC---------------ChH---H
Q 010837 52 LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQR---------------TLS---A 113 (499)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---------------~~~---~ 113 (499)
...+-+.|++++|...+..+.+.. .++...+..|.-.+.-.|.+.+|.++-+..++. |.. +
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~ 142 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILT 142 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHH
Confidence 344457899999999999988765 566666666666666678888888887766531 111 1
Q ss_pred H-----------HHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHH
Q 010837 114 Y-----------NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILK 179 (499)
Q Consensus 114 ~-----------~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~ 179 (499)
+ -+|.+..--.-.+++|+++++..... .|+-...|.-+..|. .+..-.+.+.+++..-++
T Consensus 143 fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~ALCy----yKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 143 FHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMALCY----YKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred HHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHHHHH----HhcchhhhHHHHHHHHHH
Confidence 1 11222222233567777777777664 455555555555442 344445555555554443
No 82
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.00 E-value=2.9e-06 Score=78.99 Aligned_cols=146 Identities=10% Similarity=0.002 Sum_probs=90.9
Q ss_pred HHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHH
Q 010837 195 SYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQ 274 (499)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~ 274 (499)
+..+.+..++|+..++.....+..+...-...+.+.|++++|+++|+.+.+.+...+...+.+-+.... .+... ..
T Consensus 88 c~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~---a~l~~-~~ 163 (652)
T KOG2376|consen 88 CEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVA---AALQV-QL 163 (652)
T ss_pred HHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHH---HhhhH-HH
Confidence 345788899999988866665666777777888899999999999999876655555544443221101 11111 11
Q ss_pred HHHcccCCCchhHHH---HHHHHHhcCChHHHHHHHHhcC--------CC--C---h-----hHHHHHHHHHHhCCChhH
Q 010837 275 LIKNVFFEDVKLGSA---LVDMYAKCGKIDDARRVFDHMQ--------QK--N---V-----FTWTSMIDGYGKNGNPNQ 333 (499)
Q Consensus 275 ~~~~~~~~~~~~~~~---l~~~~~~~g~~~~a~~~~~~~~--------~~--~---~-----~~~~~l~~~~~~~g~~~~ 333 (499)
+......| ..+|.. ....+...|++.+|+++++... +. + + ..--.|.-.+...|+.++
T Consensus 164 ~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 164 LQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 22222222 223322 3345677899999999988872 11 1 1 112234455667899999
Q ss_pred HHHHHHHHHHcC
Q 010837 334 ALELFCMMQECC 345 (499)
Q Consensus 334 a~~~~~~m~~~~ 345 (499)
|..+|......+
T Consensus 243 a~~iy~~~i~~~ 254 (652)
T KOG2376|consen 243 ASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHhc
Confidence 999999888775
No 83
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.00 E-value=2.3e-07 Score=84.03 Aligned_cols=196 Identities=11% Similarity=-0.013 Sum_probs=128.5
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGKNGNPNQALELFC 339 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (499)
|..++|...|.+.++..+ .+...|+.+...+...|++++|...|++..+ | +...|..+..++...|++++|.+.++
T Consensus 78 g~~~~A~~~~~~Al~l~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~ 156 (296)
T PRK11189 78 GLRALARNDFSQALALRP-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLL 156 (296)
T ss_pred CCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 444455555555555432 2456788888889999999999999998865 3 45678888888999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHH--HHHHHHHhCCC-C-
Q 010837 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE--QALKFVLEMPE-K- 415 (499)
Q Consensus 340 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~-~- 415 (499)
+..+. .|+..........+...++.++|...+++... ...|+...+ .+... ..|+.. ++.+.+.+... .
T Consensus 157 ~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~ 229 (296)
T PRK11189 157 AFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNT 229 (296)
T ss_pred HHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcH
Confidence 98875 44433222222234456789999999977552 223433322 23332 344443 33333333222 1
Q ss_pred ----CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhc
Q 010837 416 ----PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466 (499)
Q Consensus 416 ----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 466 (499)
....+|..+...+.+.|++++|+..|+++++.+|...+..-..++......
T Consensus 230 ~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~ 284 (296)
T PRK11189 230 ELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLG 284 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 234678899999999999999999999999988755344444555544443
No 84
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.99 E-value=5e-08 Score=86.94 Aligned_cols=248 Identities=13% Similarity=0.052 Sum_probs=162.2
Q ss_pred HHHhCCChhHHHHHHHhccCC----ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHH
Q 010837 195 SYVKGGKTSYARIVFDMMLEK----NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE 270 (499)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~ 270 (499)
-+.-.|++..++.-.+ .... ......-+.+++...|+++.++.-......|.......+...+ ...+..+.+..
T Consensus 10 n~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~~~~l~av~~la~y~-~~~~~~e~~l~ 87 (290)
T PF04733_consen 10 NQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSSSPELQAVRLLAEYL-SSPSDKESALE 87 (290)
T ss_dssp HHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTSSCCCHHHHHHHHHH-CTSTTHHCHHH
T ss_pred HHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCCChhHHHHHHHHHHH-hCccchHHHHH
Confidence 3455788888886555 2221 2345566778889999988777666555556655554444333 33344444444
Q ss_pred HHHHHHHcccC-CCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 010837 271 VHCQLIKNVFF-EDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349 (499)
Q Consensus 271 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 349 (499)
-+.+....... .+..+.......+...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+. ..|
T Consensus 88 ~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD 163 (290)
T PF04733_consen 88 ELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DED 163 (290)
T ss_dssp HHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCC
T ss_pred HHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 44433333322 23333333445577789999999998876 56777778889999999999999999999874 334
Q ss_pred HHHHHHHHHHHc----ccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHH
Q 010837 350 YVTFLGALSACG----HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAA 423 (499)
Q Consensus 350 ~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~ 423 (499)
.+...+..++. ...++.+|..+|+++.. ...+++.+.+.+..++...|++++|.+++.+... +.+..+...
T Consensus 164 -~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaN 240 (290)
T PF04733_consen 164 -SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLAN 240 (290)
T ss_dssp -HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHH
Confidence 33444444433 23468999999999874 3456788889999999999999999999988776 345567777
Q ss_pred HHHHHhhcCCH-HHHHHHHHHHHhcCCCC
Q 010837 424 LLSSCRLHDDV-EMANIAANEIFKLNAND 451 (499)
Q Consensus 424 l~~~~~~~~~~-~~a~~~~~~~~~~~~~~ 451 (499)
++......|+. +.+.+.+.++....|..
T Consensus 241 liv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 241 LIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 77777777777 77788888888776653
No 85
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.96 E-value=5e-06 Score=79.87 Aligned_cols=404 Identities=12% Similarity=0.032 Sum_probs=253.2
Q ss_pred CCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC----C-ChHHHHH
Q 010837 42 PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ----R-TLSAYNY 116 (499)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~-~~~~~~~ 116 (499)
+-++..|..+--+..+.|+++.+-+.|++....- --....|..+...|..+|.-..|..+++.-.. | ++..+-.
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 3577888888888899999999999999987664 34667788888889999999999999987653 2 3334433
Q ss_pred HHHHHHh-CCChhhHHHHHHHHHHc--CC--CCChhhHHHHhhhccccc------cCCcCcchhHHHHHHHHHHcCCCCc
Q 010837 117 MIAGYLK-NGQVEESLSLVRKLVSS--GE--RPDGYTFSMILKASTCCR------SNVPLPRNLGRMVHAQILKCDVKAD 185 (499)
Q Consensus 117 li~~~~~-~g~~~~a~~~~~~m~~~--g~--~p~~~~~~~ll~~~~~~~------~~~~~~~~~a~~~~~~~~~~~~~~~ 185 (499)
.-..|.+ -|.++++++.-.+.... |. ......|..+--+|.... ..+......+.+.+++.++.+ +.|
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~d 477 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTD 477 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCC
Confidence 3344444 46677777776666552 11 112223333322221110 011111233455566665554 223
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHhccC----CChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHH--HHh
Q 010837 186 DVLYTALVDSYVKGGKTSYARIVFDMMLE----KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIE--GYS 259 (499)
Q Consensus 186 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~--~~~ 259 (499)
+.+...+.--|+..++++.|.+..++..+ .+...|..+.-.+...+++.+|+.+.+.....-..-++.+.. .+.
T Consensus 478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~ 557 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE 557 (799)
T ss_pred chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence 33333344457778899999988888754 367899999999999999999999987665210000000000 000
Q ss_pred cChhhHHHHHH-------HHH----------HHHH----ccc-------CCCchhHHHHHHHHHhcC---ChHHHHHHHH
Q 010837 260 ISIETARKALE-------VHC----------QLIK----NVF-------FEDVKLGSALVDMYAKCG---KIDDARRVFD 308 (499)
Q Consensus 260 ~~~~~~~~a~~-------~~~----------~~~~----~~~-------~~~~~~~~~l~~~~~~~g---~~~~a~~~~~ 308 (499)
..-++.+++.. +|+ +... .|. .-...++..+.......+ ..+.....+.
T Consensus 558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~ 637 (799)
T KOG4162|consen 558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST 637 (799)
T ss_pred hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence 00022222222 111 1110 111 111223333322222111 1111111111
Q ss_pred hcCCCC------hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCC
Q 010837 309 HMQQKN------VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382 (499)
Q Consensus 309 ~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 382 (499)
....|+ ...|......+.+.++.++|...+.+.... ..-....|......+...|..++|.+.|.... .+
T Consensus 638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~l 713 (799)
T KOG4162|consen 638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---AL 713 (799)
T ss_pred ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hc
Confidence 111222 235666778888999999999888888764 34456677777778888999999999998887 67
Q ss_pred CC-ChhHHHHHHHHHHhcCCHHHHHH--HHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 383 KP-KMEHYACMVDLLGRAGSLEQALK--FVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 383 ~p-~~~~~~~l~~~~~~~~~~~~a~~--~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.| ++.+..++..++.+.|+..-|.. ++..+.. +.+...|..+...+.+.|+.+.|.+.|+...+.....
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~ 787 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESN 787 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCC
Confidence 78 57788999999999998887777 8888876 5678899999999999999999999999999876554
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.92 E-value=4.3e-06 Score=78.62 Aligned_cols=294 Identities=10% Similarity=-0.039 Sum_probs=172.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhccCC---C---hHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCChh-hHHH--HHH
Q 010837 188 LYTALVDSYVKGGKTSYARIVFDMMLEK---N---VICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIV-VYNA--MIE 256 (499)
Q Consensus 188 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~-~~~~--ll~ 256 (499)
.|..+...+...|+.+.+.+.+....+. + ..........+...|++++|.+.+++.. .|+.. .+.. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~ 87 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAF 87 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHH
Confidence 4555666666677777765555554221 1 1122233445677888888888888766 34332 2221 000
Q ss_pred HHhcChhhHHHHHHHHHHHHHcccCCC-chhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChh
Q 010837 257 GYSISIETARKALEVHCQLIKNVFFED-VKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPN 332 (499)
Q Consensus 257 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~ 332 (499)
......+..+.+.+.+.. .....|+ ......+...+...|++++|...+++..+ .+...+..+...+...|+++
T Consensus 88 ~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~ 165 (355)
T cd05804 88 GLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK 165 (355)
T ss_pred HhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence 111112333344444433 1112222 23444566778899999999999998875 35667788888999999999
Q ss_pred HHHHHHHHHHHcCC-CCCH--HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHH-H--HHHHHHHhcCC-----
Q 010837 333 QALELFCMMQECCV-QPNY--VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY-A--CMVDLLGRAGS----- 401 (499)
Q Consensus 333 ~a~~~~~~m~~~~~-~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~~~----- 401 (499)
+|...+++...... .|+. ..|..+...+...|++++|..++++........+..... + .++.-+...|.
T Consensus 166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~ 245 (355)
T cd05804 166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGD 245 (355)
T ss_pred HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHH
Confidence 99999998876532 1232 235567778889999999999999976221111222111 1 22333333342
Q ss_pred -HHHHHHHHHhC-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC---C-----CCchhHHHHHHHHhcCChHH
Q 010837 402 -LEQALKFVLEM-PEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN---D-----RPGAYVALSNTLAAAGKWDS 471 (499)
Q Consensus 402 -~~~a~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~-----~~~~~~~l~~~~~~~g~~~~ 471 (499)
++.+....... ..............++...|+.+.|..+++.+...... . ..........++.+.|++++
T Consensus 246 ~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~ 325 (355)
T cd05804 246 RWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYAT 325 (355)
T ss_pred HHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHH
Confidence 22222222111 11111122235666778899999999999988763322 1 12333445556679999999
Q ss_pred HHHHHHHHHhCC
Q 010837 472 VTELREKMKLRG 483 (499)
Q Consensus 472 A~~~~~~~~~~~ 483 (499)
|.+.+......+
T Consensus 326 A~~~L~~al~~a 337 (355)
T cd05804 326 ALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHH
Confidence 999998876543
No 87
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.92 E-value=2.1e-06 Score=81.85 Aligned_cols=188 Identities=15% Similarity=0.256 Sum_probs=138.6
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQ 342 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 342 (499)
..+.+|+.+++.+...+. -...|..+.+-|+..|+++.|+++|.+.- .++--|..|.+.|+|+.|.++-.+..
T Consensus 746 kew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~ 818 (1636)
T KOG3616|consen 746 KEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH 818 (1636)
T ss_pred hhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc
Confidence 566688888888877653 34567788899999999999999998653 45667788999999999998876654
Q ss_pred HcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 010837 343 ECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWA 422 (499)
Q Consensus 343 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 422 (499)
|.......|..-..-+-+.|++.+|+++|-.+. .|+. -|.+|-+.|..+..+++.++-....-..|..
T Consensus 819 --~~e~t~~~yiakaedldehgkf~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~ 886 (1636)
T KOG3616|consen 819 --GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHK 886 (1636)
T ss_pred --CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHH
Confidence 233344556555566778899999998875543 4554 4678889999999999988766544456777
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHH
Q 010837 423 ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
.+..-+-..|+.+.|++-|-++ .-|..-+++|...+.|++|-++-+.
T Consensus 887 ~f~~e~e~~g~lkaae~~flea---------~d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 887 HFAKELEAEGDLKAAEEHFLEA---------GDFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHHHHHHhccChhHHHHHHHhh---------hhHHHHHHHhhhhhhHHHHHHHHhc
Confidence 7777888888888888766543 3466667777777777777766554
No 88
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.85 E-value=4.6e-06 Score=71.06 Aligned_cols=386 Identities=13% Similarity=0.091 Sum_probs=198.5
Q ss_pred chHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC--CChHHHHH-HHHHHH
Q 010837 46 TSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ--RTLSAYNY-MIAGYL 122 (499)
Q Consensus 46 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~-li~~~~ 122 (499)
.-+++.+..+.+..++.+|.+++..-.+.. +.+....+.|...|-+..++..|-..++++.. |...-|.. -...+-
T Consensus 11 Geftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 11 GEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLY 89 (459)
T ss_pred CchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHH
Confidence 346666666666777777777766655554 23556666666667777777777777777654 33333332 233455
Q ss_pred hCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCh
Q 010837 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKT 202 (499)
Q Consensus 123 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 202 (499)
+.+.+..|+++...|... |+...-..-+.+. .....+|+
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaA--------------------------------------IkYse~Dl 128 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAA--------------------------------------IKYSEGDL 128 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHH--------------------------------------HhcccccC
Confidence 566677777777666432 2221111111111 11223444
Q ss_pred hHHHHHHHhccC-CChHhHHHHHHHHHhCCCHHHHHHHHHhcCC----CChhhHHHHHHHHhcChhhHHHHHHHHHHHHH
Q 010837 203 SYARIVFDMMLE-KNVICSTSMISGFMSQGFVEDAEEIFRKTVE----KDIVVYNAMIEGYSISIETARKALEVHCQLIK 277 (499)
Q Consensus 203 ~~A~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~ 277 (499)
..+..+++..+. .+..+.+.......+.|+++.|.+-|+...+ .....|+..+..+.+ ++.+.|++...++++
T Consensus 129 ~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~--~qyasALk~iSEIie 206 (459)
T KOG4340|consen 129 PGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSS--RQYASALKHISEIIE 206 (459)
T ss_pred cchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhh--hhHHHHHHHHHHHHH
Confidence 444444444442 3333333344444445555555555544432 122344444444321 334455555555554
Q ss_pred cccCCCc----------------------------hhHHHHHHHHHhcCChHHHHHHHHhcCC-----CChhHHHHHHHH
Q 010837 278 NVFFEDV----------------------------KLGSALVDMYAKCGKIDDARRVFDHMQQ-----KNVFTWTSMIDG 324 (499)
Q Consensus 278 ~~~~~~~----------------------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~ 324 (499)
+|++..+ ..+|.-...+.+.|+++.|.+.+..|.. -|++|...+.-.
T Consensus 207 RG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~ 286 (459)
T KOG4340|consen 207 RGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM 286 (459)
T ss_pred hhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh
Confidence 4432111 1122223345677899999999988874 366666554332
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHH
Q 010837 325 YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLE 403 (499)
Q Consensus 325 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~ 403 (499)
- ..+++....+-+.-+...+ +-...||..++-.||+..-++.|-.++.+-. ....+- +...|+.|=......-..+
T Consensus 287 n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~-~lTyk~L~~Yly~LLdaLIt~qT~pE 363 (459)
T KOG4340|consen 287 N-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENA-HLTYKFLTPYLYDLLDALITCQTAPE 363 (459)
T ss_pred c-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCc-chhHHHhhHHHHHHHHHHHhCCCCHH
Confidence 2 2455656666666666653 3456788888889999999999998887654 222222 3444443333333445667
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHH--HhhcCCHH---HHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHH
Q 010837 404 QALKFVLEMPEKPNSDVWAALLSS--CRLHDDVE---MANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 404 ~a~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
+|.+-++.+...-....-...+.. -...++-. .+++-+++.++.- ..+...-...|.+..++..++++|..
T Consensus 364 ea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y----LPVlMa~AkiyW~~~Dy~~vEk~Fr~ 439 (459)
T KOG4340|consen 364 EAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY----LPVLMAQAKIYWNLEDYPMVEKIFRK 439 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhccccccHHHHHHHHH
Confidence 776665544331000000011111 11111111 1222233332222 12345556667788899999999887
Q ss_pred HHhC
Q 010837 479 MKLR 482 (499)
Q Consensus 479 ~~~~ 482 (499)
-.+-
T Consensus 440 Svef 443 (459)
T KOG4340|consen 440 SVEF 443 (459)
T ss_pred HHhh
Confidence 6553
No 89
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.83 E-value=6.3e-07 Score=76.11 Aligned_cols=282 Identities=11% Similarity=0.071 Sum_probs=178.1
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCChhhHHHHHH-HHhcCh
Q 010837 189 YTALVDSYVKGGKTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIVVYNAMIE-GYSISI 262 (499)
Q Consensus 189 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~-~~~~~~ 262 (499)
+.+.+..+.+..+++.|++++..-.++ +....+.+..+|....++..|-+.|+++- .|...-|...-. .+.+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A- 91 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKA- 91 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHh-
Confidence 455566667777888888877666543 45667777788888888888888888775 344333332211 11222
Q ss_pred hhHHHHHHHHHHHHHcccCCCch--hHHHHHHHHHhcCChHHHHHHHHhcCC-CChhHHHHHHHHHHhCCChhHHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVK--LGSALVDMYAKCGKIDDARRVFDHMQQ-KNVFTWTSMIDGYGKNGNPNQALELFC 339 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (499)
+.+..|+++...|... ++.. +...-.......+++..+..++++... .+..+.+.......+.|+++.|.+-|+
T Consensus 92 ~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFq 168 (459)
T KOG4340|consen 92 CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQ 168 (459)
T ss_pred cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHH
Confidence 4444666666666542 1111 111111123356778888888888773 556666666666678888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCC-------------CCh--------hHHHHHHHH---
Q 010837 340 MMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK-------------PKM--------EHYACMVDL--- 395 (499)
Q Consensus 340 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------p~~--------~~~~~l~~~--- 395 (499)
...+-+--.....|+..+. +.+.|+.+.|.++..++.++ |++ ||+ ..-+.++.+
T Consensus 169 aAlqvsGyqpllAYniALa-Hy~~~qyasALk~iSEIieR-G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNL 246 (459)
T KOG4340|consen 169 AALQVSGYQPLLAYNLALA-HYSSRQYASALKHISEIIER-GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNL 246 (459)
T ss_pred HHHhhcCCCchhHHHHHHH-HHhhhhHHHHHHHHHHHHHh-hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhh
Confidence 8766533333556766664 44668888888888887743 442 111 112334333
Q ss_pred ----HHhcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcC
Q 010837 396 ----LGRAGSLEQALKFVLEMPE----KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG 467 (499)
Q Consensus 396 ----~~~~~~~~~a~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 467 (499)
+.+.|+++.|.+-+..|.- ..|+.|...+.-.-. .+++.+..+-++-+++.+|-| ..|+..++-.|++..
T Consensus 247 KaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPfP-~ETFANlLllyCKNe 324 (459)
T KOG4340|consen 247 KAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPFP-PETFANLLLLYCKNE 324 (459)
T ss_pred hhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCCC-hHHHHHHHHHHhhhH
Confidence 4678899999999988876 356677665543322 244555555566677778877 889999999999988
Q ss_pred ChHHHHHHHHH
Q 010837 468 KWDSVTELREK 478 (499)
Q Consensus 468 ~~~~A~~~~~~ 478 (499)
-++.|-.++-+
T Consensus 325 yf~lAADvLAE 335 (459)
T KOG4340|consen 325 YFDLAADVLAE 335 (459)
T ss_pred HHhHHHHHHhh
Confidence 88888776643
No 90
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.82 E-value=2e-05 Score=83.99 Aligned_cols=294 Identities=12% Similarity=0.022 Sum_probs=152.3
Q ss_pred HHHHHHHHhCCChhHHHHHHHhccC----CC--------hHhHHHHHHHHHhCCCHHHHHHHHHhcCC--C--Chh---h
Q 010837 190 TALVDSYVKGGKTSYARIVFDMMLE----KN--------VICSTSMISGFMSQGFVEDAEEIFRKTVE--K--DIV---V 250 (499)
Q Consensus 190 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~--------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~--~~~---~ 250 (499)
......+...|++++|...++.... .+ ......+...+...|++++|...+++... + +.. .
T Consensus 413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3344445556666666666554321 00 01112223345566777777666665431 1 110 0
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHcccCC-----CchhHHHHHHHHHhcCChHHHHHHHHhcCC-------C----C
Q 010837 251 YNAMIEGYSISIETARKALEVHCQLIKNVFFE-----DVKLGSALVDMYAKCGKIDDARRVFDHMQQ-------K----N 314 (499)
Q Consensus 251 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~----~ 314 (499)
....+.......|+.+.|...+.+........ ....+..+...+...|+++.|...+++... + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 11111112223366666666666655421111 112334455666777888887777666442 1 1
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHH-
Q 010837 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECC--VQPN--YVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY- 389 (499)
Q Consensus 315 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~- 389 (499)
...+..+...+...|++++|...+.+..... ..+. ...+..+...+...|+.++|...++....-.........+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 1223344455666688888877777664421 1121 2233444556667788888877777764211111100001
Q ss_pred ----HHHHHHHHhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC----C-CCc
Q 010837 390 ----ACMVDLLGRAGSLEQALKFVLEMPEK--PNS----DVWAALLSSCRLHDDVEMANIAANEIFKLNAN----D-RPG 454 (499)
Q Consensus 390 ----~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~-~~~ 454 (499)
...+..+...|+.+.|.+++...... ... ..+..+..++...|++++|...++++...... . ...
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 11123344567788888777665541 111 11345556677778888888887777653211 1 123
Q ss_pred hhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 455 AYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+...+..++.+.|+.++|...+.+..+..
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 55666777778888888887777776543
No 91
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=4.2e-07 Score=84.25 Aligned_cols=214 Identities=14% Similarity=0.059 Sum_probs=167.2
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPNQALELFC 339 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (499)
|+..+|.-.|+..++..+. +...|..|....+..++-..|+..+.+..+- |....-.|.-.|...|.-..|++.++
T Consensus 299 G~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~ 377 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLD 377 (579)
T ss_pred CCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 5577888888887776543 6678888888888888888888888887753 56677778888888999899999998
Q ss_pred HHHHcCCC--------CCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010837 340 MMQECCVQ--------PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411 (499)
Q Consensus 340 ~m~~~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 411 (499)
.-.....+ ++...-.. ..+.....+....++|-++....+..+|..++..|.-.|.-.|++++|.+.|+.
T Consensus 378 ~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~ 455 (579)
T KOG1125|consen 378 KWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEA 455 (579)
T ss_pred HHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHH
Confidence 87654211 00000000 122333445566677777776667667888899999999999999999999999
Q ss_pred CCC-CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 412 MPE-KP-NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 412 ~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
+.. +| |...||.|...++...+.++|+..|+++++..|.. +.+...|+-.|...|.+++|.+.|-..+
T Consensus 456 AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y-VR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 456 ALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY-VRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe-eeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 887 44 66799999999999999999999999999999999 8999999999999999999998776644
No 92
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=1.4e-05 Score=73.72 Aligned_cols=396 Identities=12% Similarity=0.041 Sum_probs=200.7
Q ss_pred HhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC--CC-hHHHHHHHHHHHhCCChhh
Q 010837 53 QHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ--RT-LSAYNYMIAGYLKNGQVEE 129 (499)
Q Consensus 53 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~ 129 (499)
.+....|+++.|...|-+.+... +++...|+.-..+|++.|++++|.+=-.+-.+ |+ ...|+....++.-.|++++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e 88 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE 88 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence 34567899999999999999887 56899999999999999999999875555443 43 3479999999999999999
Q ss_pred HHHHHHHHHHcCCCCCh-hhHHHHhhhccccccCCcCcchhHHHHHHHHHHcC---CCCchhHHHHHHHHHHh-------
Q 010837 130 SLSLVRKLVSSGERPDG-YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCD---VKADDVLYTALVDSYVK------- 198 (499)
Q Consensus 130 a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~------- 198 (499)
|+.-|.+=++. .|+. ..++-+..+.. .....++.-..-.++..+...- .......|..++..+-+
T Consensus 89 A~~ay~~GL~~--d~~n~~L~~gl~~a~~--~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~ 164 (539)
T KOG0548|consen 89 AILAYSEGLEK--DPSNKQLKTGLAQAYL--EDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKL 164 (539)
T ss_pred HHHHHHHHhhc--CCchHHHHHhHHHhhh--HHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhc
Confidence 99999987765 4443 33444443320 0000000000001111110000 00000112222211110
Q ss_pred ---CCChhHHHHHHHhc----------------cCC------------C----------hHhHHHHHHHHHhCCCHHHHH
Q 010837 199 ---GGKTSYARIVFDMM----------------LEK------------N----------VICSTSMISGFMSQGFVEDAE 237 (499)
Q Consensus 199 ---~g~~~~A~~~~~~~----------------~~~------------~----------~~~~~~l~~~~~~~g~~~~a~ 237 (499)
..++..+.-.+... ..| + ..-...+..+..+..+++.|.
T Consensus 165 ~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~ 244 (539)
T KOG0548|consen 165 YLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAI 244 (539)
T ss_pred ccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHH
Confidence 00011111111110 000 0 012334455555555666666
Q ss_pred HHHHhcCCC-ChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCC------chhHHHHHHHHHhcCChHHHHHHHHhc
Q 010837 238 EIFRKTVEK-DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFED------VKLGSALVDMYAKCGKIDDARRVFDHM 310 (499)
Q Consensus 238 ~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~ 310 (499)
+-+....+. ...+|...+.+..-..+....+........+.|...- ...+..+..+|.+.++++.+...|.+.
T Consensus 245 q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 245 QHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 666555422 2233333333322222333343333333333322100 011111233455555666666666554
Q ss_pred CCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhH
Q 010837 311 QQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV-TFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEH 388 (499)
Q Consensus 311 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~ 388 (499)
..+... -+...+....+++....+...- +.|... -...-...+.+.|++..|+..|.+++.. .| |...
T Consensus 325 Lte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr---~P~Da~l 394 (539)
T KOG0548|consen 325 LTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR---DPEDARL 394 (539)
T ss_pred hhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---CCchhHH
Confidence 321000 0011112223333333332222 222221 1111244556677888888888877732 35 6777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 010837 389 YACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464 (499)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 464 (499)
|..-.-+|.+.|.+..|++-.+...+ ++....|..-..++....+++.|.+.|++.++.+|.. ......+.+++.
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~-~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSN-AEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchh-HHHHHHHHHHHH
Confidence 77777778888887777776666655 2334455555556666667788888888877777665 444444444444
No 93
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.79 E-value=9.8e-07 Score=78.72 Aligned_cols=117 Identities=13% Similarity=0.101 Sum_probs=65.5
Q ss_pred HHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCCh-hhHHHHHHHHh---cChhhHHH
Q 010837 192 LVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI-VVYNAMIEGYS---ISIETARK 267 (499)
Q Consensus 192 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~ll~~~~---~~~~~~~~ 267 (499)
...++...|++++|+++++.. .+.......+..|.+.++++.|.+.++.|.+-+. .+...+..++. ..++...+
T Consensus 108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~ 185 (290)
T PF04733_consen 108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQD 185 (290)
T ss_dssp HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCH
T ss_pred HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHH
Confidence 334566789999999888775 5667777788899999999999999988874422 22222333221 12223444
Q ss_pred HHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcC
Q 010837 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311 (499)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 311 (499)
|.-+|+++.+. ..+++.+.+.+..++...|++++|.+++.+..
T Consensus 186 A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al 228 (290)
T PF04733_consen 186 AFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEAL 228 (290)
T ss_dssp HHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55555554332 23344444444444444444444444444433
No 94
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.78 E-value=7.4e-07 Score=90.52 Aligned_cols=200 Identities=13% Similarity=0.144 Sum_probs=162.7
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHhcCCC--------ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHH
Q 010837 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQK--------NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFL 354 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~ 354 (499)
+...|-.-|......++.++|+++++++... -...|-++++.-...|.-+...++|++..+. --....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 3456777788888899999999999887641 2346788888777778888889999998874 22345678
Q ss_pred HHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC---CHHHHHHHHHHHhh
Q 010837 355 GALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-KP---NSDVWAALLSSCRL 430 (499)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~---~~~~~~~l~~~~~~ 430 (499)
.|...|.+.+..++|.++|+.|.++++ -...+|...+..+.+.++-+.|..++.++.+ -| ......-.+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 888899999999999999999998776 4556788889999999999999999988776 22 34455555666678
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 010837 431 HDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487 (499)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 487 (499)
.||.+++..+|+..+...|.- ...|+.+++.-.+.|+.+.++.+|++....++.+.
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKR-tDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKR-TDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccc-hhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 899999999999999999888 88999999999999999999999999999888765
No 95
>PF12854 PPR_1: PPR repeat
Probab=98.74 E-value=1.8e-08 Score=57.06 Aligned_cols=34 Identities=35% Similarity=0.522 Sum_probs=30.5
Q ss_pred cCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcc
Q 010837 180 CDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213 (499)
Q Consensus 180 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 213 (499)
.|+.||..+|++||++|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3788999999999999999999999999999884
No 96
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=5.7e-05 Score=73.32 Aligned_cols=353 Identities=14% Similarity=0.097 Sum_probs=203.2
Q ss_pred ChHHHHHHHH--HHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHc-C--------CCCChh
Q 010837 79 NTNISIKLLI--LHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSS-G--------ERPDGY 147 (499)
Q Consensus 79 ~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g--------~~p~~~ 147 (499)
|..+-..+++ .|..-|+.|.|.+-.+.++ +-..|..+.+.|.+..+.+-|.-.+-.|... | -.|+..
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~ 802 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEED 802 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcch
Confidence 4455555544 3566677777776666553 3456777777777777777666555555432 1 123222
Q ss_pred hHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCC-ChHhHHHHHHH
Q 010837 148 TFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK-NVICSTSMISG 226 (499)
Q Consensus 148 ~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~ 226 (499)
.-....-+ ...|..++|+.++++..+.. .|=..|-..|.|++|.++-+.--.- =..||.....-
T Consensus 803 eakvAvLA------ieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~ 867 (1416)
T KOG3617|consen 803 EAKVAVLA------IELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKY 867 (1416)
T ss_pred hhHHHHHH------HHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHH
Confidence 11111111 66778889999998877643 3445677789999998887654332 23577777788
Q ss_pred HHhCCCHHHHHHHHHhcCCCChhhHHH----------------------HHHHHhcChhhHHHHHHHHHHHHHcccCCCc
Q 010837 227 FMSQGFVEDAEEIFRKTVEKDIVVYNA----------------------MIEGYSISIETARKALEVHCQLIKNVFFEDV 284 (499)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~~~~~~~~~----------------------ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 284 (499)
+-..++.+.|++.|++...+--..+.. .-..|..+.|..+.|+.++....+
T Consensus 868 Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------- 940 (1416)
T KOG3617|consen 868 LEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------- 940 (1416)
T ss_pred HHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-------
Confidence 888889999999998764322111111 112222333445555555544433
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH----
Q 010837 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC---- 360 (499)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~---- 360 (499)
|-++++..+-.|+.++|-++-++- .|......+.+.|-..|++.+|...|.+.+. |...|..|
T Consensus 941 --~fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd 1007 (1416)
T KOG3617|consen 941 --YFSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKEND 1007 (1416)
T ss_pred --hhhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcC
Confidence 233444455556666666655432 3666777788889999999999998887643 22222222
Q ss_pred -----------cccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------------CC
Q 010837 361 -----------GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-------------KP 416 (499)
Q Consensus 361 -----------~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------------~~ 416 (499)
....+.-.|-++|++. |.. ...-+..|-+.|.+.+|+++--+-.+ ..
T Consensus 1008 ~~d~L~nlal~s~~~d~v~aArYyEe~----g~~-----~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~s 1078 (1416)
T KOG3617|consen 1008 MKDRLANLALMSGGSDLVSAARYYEEL----GGY-----AHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGS 1078 (1416)
T ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHc----chh-----hhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCC
Confidence 1222334444555443 211 12334567788888888776322221 24
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHh----------cC----------------CCCC----CchhHHHHHHHHhc
Q 010837 417 NSDVWAALLSSCRLHDDVEMANIAANEIFK----------LN----------------ANDR----PGAYVALSNTLAAA 466 (499)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~----------------~~~~----~~~~~~l~~~~~~~ 466 (499)
|+...+....-++...++++|..++-...+ .+ -.++ ......++..|.++
T Consensus 1079 Dp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQ 1158 (1416)
T KOG3617|consen 1079 DPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQ 1158 (1416)
T ss_pred CHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhc
Confidence 555566656666666666666665433321 11 1111 23456788889999
Q ss_pred CChHHHHHHHH
Q 010837 467 GKWDSVTELRE 477 (499)
Q Consensus 467 g~~~~A~~~~~ 477 (499)
|.+..|.+-|.
T Consensus 1159 G~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1159 GAYHAATKKFT 1169 (1416)
T ss_pred cchHHHHHHHh
Confidence 98877765543
No 97
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.72 E-value=3e-05 Score=75.21 Aligned_cols=340 Identities=13% Similarity=0.085 Sum_probs=180.8
Q ss_pred hccCCCCChHHHHHHHH--HHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHc
Q 010837 103 FDELPQRTLSAYNYMIA--GYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC 180 (499)
Q Consensus 103 ~~~~~~~~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~ 180 (499)
|-.+..-|..+-..+++ .|...|+.+.|.+-.+-.+. ...|..+-+.| ....+.+.|+-.+..|...
T Consensus 718 Fvgle~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~IkS------~~vW~nmA~Mc-----VkT~RLDVAkVClGhm~~a 786 (1416)
T KOG3617|consen 718 FVGLENCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS------DSVWDNMASMC-----VKTRRLDVAKVCLGHMKNA 786 (1416)
T ss_pred hcCccccCHHHHHhhhceeEEEEeccHHHHHHHHHHHhh------hHHHHHHHHHh-----hhhccccHHHHhhhhhhhh
Confidence 33444567777777774 36778999999887776653 45677777777 6666666655554444321
Q ss_pred ---------CCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCC-hhh
Q 010837 181 ---------DVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKD-IVV 250 (499)
Q Consensus 181 ---------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~ 250 (499)
.-.++ .+-..+.-.....|-+++|..+|++... |..|=..|...|.+++|.++-+.-.+-. ..|
T Consensus 787 RgaRAlR~a~q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~T 860 (1416)
T KOG3617|consen 787 RGARALRRAQQNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNT 860 (1416)
T ss_pred hhHHHHHHHHhCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceehhhh
Confidence 11222 2223333345678999999999998865 3345566788999999999886543211 112
Q ss_pred HHHHHHHHhcChhhHHHHHHHHHHHHHc-------------------ccCCCchhHHHHHHHHHhcCChHHHHHHHHhcC
Q 010837 251 YNAMIEGYSISIETARKALEVHCQLIKN-------------------VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQ 311 (499)
Q Consensus 251 ~~~ll~~~~~~~~~~~~a~~~~~~~~~~-------------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 311 (499)
|......+ ...++.+.|++.|+..... .-..|...|..-...+-..|+.|.|+.+|....
T Consensus 861 yy~yA~~L-ear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 861 YYNYAKYL-EARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred HHHHHHHH-HhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 22222222 2225666777766543111 011123333333444444556666666555432
Q ss_pred CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCC--C--CChh
Q 010837 312 QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM--K--PKME 387 (499)
Q Consensus 312 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~--p~~~ 387 (499)
-|-+++...|-.|+.++|-.+-++ .-|......+...|...|++.+|..+|.+... +.- . ....
T Consensus 940 -----D~fs~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa-fsnAIRlcKEnd 1007 (1416)
T KOG3617|consen 940 -----DYFSMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA-FSNAIRLCKEND 1007 (1416)
T ss_pred -----hhhhheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-HHHHHHHHHhcC
Confidence 344555555666666666665443 22444455566677777777777777766541 000 0 0000
Q ss_pred HHHHHHHHHH--hcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH--------HHH--hcCCCCCCch
Q 010837 388 HYACMVDLLG--RAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAAN--------EIF--KLNANDRPGA 455 (499)
Q Consensus 388 ~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~--~~~~~~~~~~ 455 (499)
.-..|..... ...+.-.|-++|++... -....+..|-+.|.+.+|+++.= +++ ..++..++..
T Consensus 1008 ~~d~L~nlal~s~~~d~v~aArYyEe~g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~l 1082 (1416)
T KOG3617|consen 1008 MKDRLANLALMSGGSDLVSAARYYEELGG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKL 1082 (1416)
T ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHcch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHH
Confidence 0011111111 12223334444444332 11122334556666666665421 111 2445555666
Q ss_pred hHHHHHHHHhcCChHHHHHHHH
Q 010837 456 YVALSNTLAAAGKWDSVTELRE 477 (499)
Q Consensus 456 ~~~l~~~~~~~g~~~~A~~~~~ 477 (499)
.+.-...+....++++|..++-
T Consensus 1083 l~RcadFF~~~~qyekAV~lL~ 1104 (1416)
T KOG3617|consen 1083 LRRCADFFENNQQYEKAVNLLC 1104 (1416)
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 7766777777777777766554
No 98
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.72 E-value=5.4e-05 Score=80.75 Aligned_cols=258 Identities=10% Similarity=0.004 Sum_probs=147.8
Q ss_pred HHHHHHhCCChhHHHHHHHhccC----CCh----HhHHHHHHHHHhCCCHHHHHHHHHhcCC-------CCh--hhHHHH
Q 010837 192 LVDSYVKGGKTSYARIVFDMMLE----KNV----ICSTSMISGFMSQGFVEDAEEIFRKTVE-------KDI--VVYNAM 254 (499)
Q Consensus 192 l~~~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~~--~~~~~l 254 (499)
+...+...|++++|...++...+ .+. ...+.+...+...|++++|...+.+... +.. .....+
T Consensus 458 ~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l 537 (903)
T PRK04841 458 RAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ 537 (903)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH
Confidence 34445556666666666655432 111 2334444555666666666666655541 111 111111
Q ss_pred HHHHhcChhhHHHHHHHHHHHHHc----ccCC---CchhHHHHHHHHHhcCChHHHHHHHHhcCC------C--ChhHHH
Q 010837 255 IEGYSISIETARKALEVHCQLIKN----VFFE---DVKLGSALVDMYAKCGKIDDARRVFDHMQQ------K--NVFTWT 319 (499)
Q Consensus 255 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~--~~~~~~ 319 (499)
-..+. ..|+.+.|...+++.... +... ....+..+...+...|++++|...+++... + ....+.
T Consensus 538 a~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 616 (903)
T PRK04841 538 SEILF-AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLA 616 (903)
T ss_pred HHHHH-HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHH
Confidence 11222 236666666666554432 2111 122334455667777999999888877642 1 123344
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcC--CCCCHH--HH--HHHHHHHcccCcHHHHHHHHHHchHhcCCCCC---hhHHH
Q 010837 320 SMIDGYGKNGNPNQALELFCMMQECC--VQPNYV--TF--LGALSACGHAGLVDKGREIFESMERDYSMKPK---MEHYA 390 (499)
Q Consensus 320 ~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~--~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~ 390 (499)
.+...+...|+.++|.+.+.+..... ...... .. ...+..+...|+.+.|...+...... ..... ...+.
T Consensus 617 ~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~ 695 (903)
T PRK04841 617 MLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWR 695 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHH
Confidence 45667778999999999888875421 111110 10 11123345578999999988776521 11111 11234
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCC------C--CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 391 CMVDLLGRAGSLEQALKFVLEMPEK------P--NSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~------~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.+..++...|++++|...+++.... + ...+...+..++...|+.++|...+.++.+.....
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~ 764 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRT 764 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc
Confidence 5677788899999999998887651 1 12356667778889999999999999998866443
No 99
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.71 E-value=2e-05 Score=68.67 Aligned_cols=54 Identities=13% Similarity=0.137 Sum_probs=27.7
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 427 SCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
++...+++-+|++...++++..+.. ..++..-..+|.-...+++|+.-|+...+
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~d-v~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPDD-VQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCchH-HHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 3344455555555555555555444 45555555555555555555555544433
No 100
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.71 E-value=1.4e-06 Score=76.56 Aligned_cols=181 Identities=10% Similarity=-0.024 Sum_probs=113.0
Q ss_pred chhHHHHHHHHHhcCChHHHHHHHHhcCC--CC-h---hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH--HHHHH
Q 010837 284 VKLGSALVDMYAKCGKIDDARRVFDHMQQ--KN-V---FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY--VTFLG 355 (499)
Q Consensus 284 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~ 355 (499)
...+..+...+.+.|++++|...|+++.+ |+ . ..+..+..++...|++++|...++++.+....... .++..
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 112 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL 112 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence 34555566677777777777777776654 21 1 34566677777777777777777777664211111 13444
Q ss_pred HHHHHccc--------CcHHHHHHHHHHchHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 010837 356 ALSACGHA--------GLVDKGREIFESMERDYSMKPKM-EHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLS 426 (499)
Q Consensus 356 ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~ 426 (499)
+..++... |+.++|.+.++.+... .|+. ..+..+..... ..... ......+..
T Consensus 113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~a~ 174 (235)
T TIGR03302 113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYVAR 174 (235)
T ss_pred HHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHHHH
Confidence 44444433 5677777777777632 3422 22222211100 00000 001124556
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCC--CCchhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 427 SCRLHDDVEMANIAANEIFKLNAND--RPGAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
.+.+.|++++|...++++++..+.. ....+..++.++.+.|++++|..+++.+...
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7889999999999999999886642 2578899999999999999999999888654
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.69 E-value=5e-05 Score=75.28 Aligned_cols=287 Identities=15% Similarity=0.161 Sum_probs=168.2
Q ss_pred HHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC------------CCChH----HH-
Q 010837 52 LQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP------------QRTLS----AY- 114 (499)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------~~~~~----~~- 114 (499)
..-+-+.+++......++..+..| .-|+.++|+|.+.|..+++-.+- .+.+-+ ++|+. +|
T Consensus 845 v~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~--fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe 921 (1666)
T KOG0985|consen 845 VEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPER--FLKENPYYDSKVVGKYCEKRDPHLACVAYE 921 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHH--hcccCCcchhhHHhhhhcccCCceEEEeec
Confidence 333445566666777788888888 57899999999999888765542 222211 11111 11
Q ss_pred -----HHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCC--Cchh
Q 010837 115 -----NYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK--ADDV 187 (499)
Q Consensus 115 -----~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~ 187 (499)
..||+.|-.+.-+..-.+. +.+ ..|...|+.++.- .. ..-+++.++.+..+++ .|+.
T Consensus 922 rGqcD~elI~vcNeNSlfK~~aRY---lv~---R~D~~LW~~VL~e------~n----~~rRqLiDqVv~tal~E~~dPe 985 (1666)
T KOG0985|consen 922 RGQCDLELINVCNENSLFKSQARY---LVE---RSDPDLWAKVLNE------EN----PYRRQLIDQVVQTALPETQDPE 985 (1666)
T ss_pred ccCCcHHHHHhcCchhHHHHHHHH---HHh---ccChHHHHHHHhc------cC----hHHHHHHHHHHHhcCCccCChH
Confidence 1233333222222111110 111 2344455555532 11 1123344444444443 3555
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHhccC-C-----ChHhHHHHH---------------------------HHHHhCCCHH
Q 010837 188 LYTALVDSYVKGGKTSYARIVFDMMLE-K-----NVICSTSMI---------------------------SGFMSQGFVE 234 (499)
Q Consensus 188 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~l~---------------------------~~~~~~g~~~ 234 (499)
....-+.++...+-..+-+++++++.- + +...-|.++ ..+...+-++
T Consensus 986 ~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyE 1065 (1666)
T KOG0985|consen 986 EVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYE 1065 (1666)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHH
Confidence 566667788888888888888888732 2 112222222 2244555566
Q ss_pred HHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCC
Q 010837 235 DAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKN 314 (499)
Q Consensus 235 ~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 314 (499)
+|..+|++.. -+......++... +..+.|.++-+.. ..+.+|..+..+-.+.|.+.+|.+-|-+. .|
T Consensus 1066 EAF~ifkkf~-~n~~A~~VLie~i----~~ldRA~efAe~~------n~p~vWsqlakAQL~~~~v~dAieSyika--dD 1132 (1666)
T KOG0985|consen 1066 EAFAIFKKFD-MNVSAIQVLIENI----GSLDRAYEFAERC------NEPAVWSQLAKAQLQGGLVKDAIESYIKA--DD 1132 (1666)
T ss_pred HHHHHHHHhc-ccHHHHHHHHHHh----hhHHHHHHHHHhh------CChHHHHHHHHHHHhcCchHHHHHHHHhc--CC
Confidence 6777666542 2333444444433 4455555444433 34667888999999999999998888665 46
Q ss_pred hhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHH
Q 010837 315 VFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372 (499)
Q Consensus 315 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 372 (499)
+..|..+++...+.|.+++-.+.+...++..-.|... +.|+-+|++.+++.+-+++
T Consensus 1133 ps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~f 1188 (1666)
T KOG0985|consen 1133 PSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEF 1188 (1666)
T ss_pred cHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHH
Confidence 6678889999999999999999888877776666554 3577788888777665543
No 102
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.68 E-value=4.1e-05 Score=71.95 Aligned_cols=264 Identities=15% Similarity=0.055 Sum_probs=164.4
Q ss_pred hHhHHHHHHHHHhCCCHHHHHHHHHhcC-----CCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHH--
Q 010837 217 VICSTSMISGFMSQGFVEDAEEIFRKTV-----EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSA-- 289 (499)
Q Consensus 217 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-- 289 (499)
...|..+...+...|+.+++.+.+.+.. ..+......+........|+.++|...++...+..+. +...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhH
Confidence 3456666777777888888766666543 2233223333333344458899999999998886432 3333331
Q ss_pred -HHHHHHhcCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCc
Q 010837 290 -LVDMYAKCGKIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365 (499)
Q Consensus 290 -l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 365 (499)
........+..+.+.+.+...... .......+...+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 111122345566666666553322 23344556678889999999999999999863 4456677888889999999
Q ss_pred HHHHHHHHHHchHhcCCCCCh--hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC--C-HHHH-H--HHHHHHhhcCCHHH
Q 010837 366 VDKGREIFESMERDYSMKPKM--EHYACMVDLLGRAGSLEQALKFVLEMPE-KP--N-SDVW-A--ALLSSCRLHDDVEM 436 (499)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~--~-~~~~-~--~l~~~~~~~~~~~~ 436 (499)
+++|...++.........|+. ..|..+...+...|++++|.+++++... .| . .... + .++.-+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999988432222332 3456788889999999999999999754 23 1 1111 1 22333334443333
Q ss_pred HHHH---HHHHHhcCCCCCCchh--HHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 437 ANIA---ANEIFKLNANDRPGAY--VALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 437 a~~~---~~~~~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+.++ ........+.+ ...+ ...+.++...|+.++|.+.++.+....
T Consensus 244 ~~~w~~~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~ 294 (355)
T cd05804 244 GDRWEDLADYAAWHFPDH-GLAFNDLHAALALAGAGDKDALDKLLAALKGRA 294 (355)
T ss_pred HHHHHHHHHHHHhhcCcc-cchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 3332 12111111111 2223 367777889999999999999987543
No 103
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.67 E-value=9.4e-05 Score=71.00 Aligned_cols=185 Identities=17% Similarity=0.143 Sum_probs=101.8
Q ss_pred CCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHH
Q 010837 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241 (499)
Q Consensus 162 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 241 (499)
.....+..|..+++.+.+... -..-|..+.+.|...|+++.|.++|-+.- .++--|..|.+.|+++.|.++-.
T Consensus 743 i~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 743 IGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHH
Confidence 445566677777776655432 22345666777777788888877775532 34556677778888888877777
Q ss_pred hcCCCChh--hHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC-CChhHH
Q 010837 242 KTVEKDIV--VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-KNVFTW 318 (499)
Q Consensus 242 ~~~~~~~~--~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~ 318 (499)
+...|... .|.+-..-+-.. |.+.+|.+++-.+.. | ...|.+|-+.|..++.+++..+-.. .-..+.
T Consensus 816 e~~~~e~t~~~yiakaedldeh-gkf~eaeqlyiti~~----p-----~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~ 885 (1636)
T KOG3616|consen 816 ECHGPEATISLYIAKAEDLDEH-GKFAEAEQLYITIGE----P-----DKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTH 885 (1636)
T ss_pred HhcCchhHHHHHHHhHHhHHhh-cchhhhhheeEEccC----c-----hHHHHHHHhhCcchHHHHHHHHhChhhhhHHH
Confidence 66655332 222222222122 344344443322211 1 2245566667777776666665432 122344
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHH
Q 010837 319 TSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREI 372 (499)
Q Consensus 319 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 372 (499)
..+..-+-..|+...|...|-+..+ |...+..|-.++-+++|.++
T Consensus 886 ~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 886 KHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred HHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHH
Confidence 4555566666777777666654432 33444555555555555554
No 104
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.67 E-value=2.3e-05 Score=65.89 Aligned_cols=250 Identities=12% Similarity=0.028 Sum_probs=159.3
Q ss_pred HHHhCCChhHHHHHHHhccC--CChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHH
Q 010837 195 SYVKGGKTSYARIVFDMMLE--KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVH 272 (499)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~ 272 (499)
-+.-.|.+..++..-..... .+...-.-+.++|...|.+.....-......+.......+-.........-+....+.
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~ 96 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLY 96 (299)
T ss_pred HHHHhhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHH
Confidence 34446777777665554422 2444445566777778877655544433332333333222222222222333344555
Q ss_pred HHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 010837 273 CQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352 (499)
Q Consensus 273 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 352 (499)
+.+.......+......-...|.+.|++++|.+..+.. .+......=...+.+..+++-|.+.+++|.+- .+..|
T Consensus 97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~--~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~t 171 (299)
T KOG3081|consen 97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG--ENLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDAT 171 (299)
T ss_pred HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHH
Confidence 66666555444444444455688999999999998883 33344444455667788899999999999863 35667
Q ss_pred HHHHHHHHc----ccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHH
Q 010837 353 FLGALSACG----HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK--PNSDVWAALLS 426 (499)
Q Consensus 353 ~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~ 426 (499)
.+.|..++. ..+.+..|.-+|+++.+ ...|+..+.+....++...|++++|..++++...+ .+..+...++-
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv 249 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIV 249 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 776666654 34568899999999984 35678888888888889999999999999988873 45666666665
Q ss_pred HHhhcC-CHHHHHHHHHHHHhcCCCC
Q 010837 427 SCRLHD-DVEMANIAANEIFKLNAND 451 (499)
Q Consensus 427 ~~~~~~-~~~~a~~~~~~~~~~~~~~ 451 (499)
.....| +.+-..+.+.+.....|+.
T Consensus 250 ~a~~~Gkd~~~~~r~l~QLk~~~p~h 275 (299)
T KOG3081|consen 250 LALHLGKDAEVTERNLSQLKLSHPEH 275 (299)
T ss_pred HHHHhCCChHHHHHHHHHHHhcCCcc
Confidence 555555 4455556677776666654
No 105
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.66 E-value=0.00037 Score=64.80 Aligned_cols=149 Identities=11% Similarity=0.074 Sum_probs=102.6
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHH
Q 010837 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFV 409 (499)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~ 409 (499)
.+....+++++...-..--..+|..++..-.+..-+..|..+|.++.+. +..+ .+.++++++.-|| .++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 5556666666654322222345667777777777788888888888743 5566 7777788887554 57778888888
Q ss_pred HhCCCC-CCHH-HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC--CCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 410 LEMPEK-PNSD-VWAALLSSCRLHDDVEMANIAANEIFKLNAN--DRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 410 ~~~~~~-~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+--..+ +|.. .-...+.-+...++-..|..+|++.+..+.. -...+|..++..-..-|+...+.++-+++..
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 876652 4443 3345556667778888888888888877333 2346788888888888888888888777654
No 106
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.63 E-value=2.9e-06 Score=71.44 Aligned_cols=120 Identities=14% Similarity=0.087 Sum_probs=65.9
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHH-HhcCC--HH
Q 010837 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLL-GRAGS--LE 403 (499)
Q Consensus 328 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~~~--~~ 403 (499)
.++.+++...++...+.+ +.|...|..+...|...|++++|...|++.. .+.| +...+..+..++ ...|+ .+
T Consensus 52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al---~l~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQAL---QLRGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 344455555555554432 3455556666666666666666666666655 2334 445555555543 44444 35
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 404 QALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 404 ~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
+|.+++++... +.+..++..+...+...|++++|+..|+++.+..+..
T Consensus 128 ~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~ 177 (198)
T PRK10370 128 QTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPR 177 (198)
T ss_pred HHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 66666666555 2344555555556666666666666666666655544
No 107
>PF12854 PPR_1: PPR repeat
Probab=98.62 E-value=7.7e-08 Score=54.42 Aligned_cols=32 Identities=25% Similarity=0.508 Sum_probs=18.8
Q ss_pred CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 010837 381 SMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412 (499)
Q Consensus 381 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 412 (499)
|+.||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555666666666666666666555555
No 108
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.61 E-value=6.8e-05 Score=69.41 Aligned_cols=369 Identities=14% Similarity=0.118 Sum_probs=214.9
Q ss_pred HHHHcCCChhHHHHHhccCC---CCChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCC-hhhHHHHhhhccccccCC
Q 010837 88 ILHLKCGALKYAGQMFDELP---QRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPD-GYTFSMILKASTCCRSNV 163 (499)
Q Consensus 88 ~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~ 163 (499)
.+.+..|+++.|...|-+.. ++|-+.|..-..+|+..|++++|++=-.+-++ +.|+ ...|+-.-.++ ..
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~-----~~ 82 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAAL-----FG 82 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHH-----Hh
Confidence 45567899999999998765 45667788888999999999998876666655 3555 34677666666 77
Q ss_pred cCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHH------HhccC-C------ChHhHHHHHHHH---
Q 010837 164 PLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVF------DMMLE-K------NVICSTSMISGF--- 227 (499)
Q Consensus 164 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~------~~~~~-~------~~~~~~~l~~~~--- 227 (499)
.|+++.|..-|..-++.. +.+...++.|.+++... .. +.+.| ..+.. + ....|..++..+
T Consensus 83 lg~~~eA~~ay~~GL~~d-~~n~~L~~gl~~a~~~~--~~-~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~ 158 (539)
T KOG0548|consen 83 LGDYEEAILAYSEGLEKD-PSNKQLKTGLAQAYLED--YA-ADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKN 158 (539)
T ss_pred cccHHHHHHHHHHHhhcC-CchHHHHHhHHHhhhHH--HH-hhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcC
Confidence 888899988888766654 44556777777777211 00 11111 11100 0 011222222221
Q ss_pred -------HhCCCHHHHHHHHHhcC----------------CC------------Ch----------hhHHHHHHHHhcCh
Q 010837 228 -------MSQGFVEDAEEIFRKTV----------------EK------------DI----------VVYNAMIEGYSISI 262 (499)
Q Consensus 228 -------~~~g~~~~a~~~~~~~~----------------~~------------~~----------~~~~~ll~~~~~~~ 262 (499)
..-.++..+.-.+.... .| |. .....+.++..+.
T Consensus 159 p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykk- 237 (539)
T KOG0548|consen 159 PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKK- 237 (539)
T ss_pred cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHh-
Confidence 11111112221111110 01 00 0112222222222
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCCh---hHHHH-------HHHHHHhCCChh
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNV---FTWTS-------MIDGYGKNGNPN 332 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~-------l~~~~~~~g~~~ 332 (499)
.+++.+.+-+....+.. -+...++....+|...|.+.++...-+...+..- .-|+. +..+|.+.++++
T Consensus 238 k~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~ 315 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYE 315 (539)
T ss_pred hhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHH
Confidence 44445555555554443 3444455555666666666665555444333211 11111 233455556666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHh
Q 010837 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME-HYACMVDLLGRAGSLEQALKFVLE 411 (499)
Q Consensus 333 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~ 411 (499)
.|...|.+....-..|+.. .+....+++........ -+.|... --..-...+.+.|++..|++.|.+
T Consensus 316 ~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 316 GAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred HHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 6666666654433332221 12223333333333222 3334321 112225567789999999999999
Q ss_pred CCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 412 MPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 412 ~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+.. +.|...|..-..+|.+.|.+..|+.-.+..++.+|.. ...|..=+.++....+|+.|.+.|++-.+.+
T Consensus 384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~-~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 384 AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNF-IKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 887 3567789999999999999999999999999998888 7888888888888899999999998877654
No 109
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.58 E-value=4.6e-05 Score=75.49 Aligned_cols=414 Identities=14% Similarity=0.073 Sum_probs=207.2
Q ss_pred HHhhhCCCChhhHHHHHHHHHHhCCCCC-hHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHHHHHhCCCh
Q 010837 52 LQHYINSDTPFYGLKIHAHITKTGVKPN-TNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIAGYLKNGQV 127 (499)
Q Consensus 52 l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 127 (499)
+..|.+.. ...+...|=+..+. .++ ...|..|...|+...+...|.+.|+...+ .+..++......|++..++
T Consensus 466 a~~~~rK~-~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~w 542 (1238)
T KOG1127|consen 466 ALGCMRKN-SALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTW 542 (1238)
T ss_pred HHHHhhhh-HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccH
Confidence 34444433 44444444443333 233 25677777777777777778888777654 3555677777788888888
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHH
Q 010837 128 EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARI 207 (499)
Q Consensus 128 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 207 (499)
+.|..+.-..-+.. +--...++-+-++... ...++...+..-|+...+.. +-|...|..+..+|.++|++..|.+
T Consensus 543 e~a~~I~l~~~qka-~a~~~k~nW~~rG~yy---Lea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlK 617 (1238)
T KOG1127|consen 543 EEAFEICLRAAQKA-PAFACKENWVQRGPYY---LEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALK 617 (1238)
T ss_pred HHHHHHHHHHhhhc-hHHHHHhhhhhccccc---cCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHH
Confidence 88877743332221 1111122222221100 45555555666666555443 4455677778888888888888888
Q ss_pred HHHhccCCChH-hHHH--HHHHHHhCCCHHHHHHHHHhcCC------C---Ch-hhHHHHH-----HHH-hcChhhHHHH
Q 010837 208 VFDMMLEKNVI-CSTS--MISGFMSQGFVEDAEEIFRKTVE------K---DI-VVYNAMI-----EGY-SISIETARKA 268 (499)
Q Consensus 208 ~~~~~~~~~~~-~~~~--l~~~~~~~g~~~~a~~~~~~~~~------~---~~-~~~~~ll-----~~~-~~~~~~~~~a 268 (499)
+|.+...-++. .|.. ..-.-+..|.+.+|+..+..... + +. .++..+. .++ .+..+..+++
T Consensus 618 vF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 618 VFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred hhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 88666443221 1111 22233445555555555544320 0 00 0000000 000 0000111111
Q ss_pred HH-------------------------HHHH-----------------HHHcccC--------------------CCchh
Q 010837 269 LE-------------------------VHCQ-----------------LIKNVFF--------------------EDVKL 286 (499)
Q Consensus 269 ~~-------------------------~~~~-----------------~~~~~~~--------------------~~~~~ 286 (499)
++ +|-+ ....+.- .+..+
T Consensus 698 ie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~ 777 (1238)
T KOG1127|consen 698 IESFIVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYP 777 (1238)
T ss_pred HHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccch
Confidence 11 1111 1111111 11122
Q ss_pred HHHHHHHHHh----c----CChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 010837 287 GSALVDMYAK----C----GKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLG 355 (499)
Q Consensus 287 ~~~l~~~~~~----~----g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 355 (499)
|..|+..|.+ . .+...|...+.+..+ .+...|+.|.-. ...|++.-+...|-+-... .+-+..+|..
T Consensus 778 WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~s-ep~~~~~W~N 855 (1238)
T KOG1127|consen 778 WYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFS-EPTCHCQWLN 855 (1238)
T ss_pred HHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhc-cccchhheec
Confidence 2222222221 0 111234444444332 344555555444 4445555555555444433 1334455666
Q ss_pred HHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------CCCHHHHHHHHHH
Q 010837 356 ALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-------KPNSDVWAALLSS 427 (499)
Q Consensus 356 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~l~~~ 427 (499)
+...+.+..+++.|...|.... .+.| +...|-.........|+.-++..+|..-.+ -+....|......
T Consensus 856 lgvL~l~n~d~E~A~~af~~~q---SLdP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~ 932 (1238)
T KOG1127|consen 856 LGVLVLENQDFEHAEPAFSSVQ---SLDPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEI 932 (1238)
T ss_pred cceeEEecccHHHhhHHHHhhh---hcCchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHH
Confidence 6666677788888888888877 5666 555565555555567777777777765211 1444444444444
Q ss_pred HhhcCCHHHHHHHH----------HHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHH
Q 010837 428 CRLHDDVEMANIAA----------NEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479 (499)
Q Consensus 428 ~~~~~~~~~a~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 479 (499)
....|+.++-+... ++.....|+. ..+|...+......+.+.+|.+...+.
T Consensus 933 h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~-~fAy~~~gstlEhL~ey~~a~ela~Rl 993 (1238)
T KOG1127|consen 933 HLQNGNIEESINTARKISSASLALSYYFLGHPQL-CFAYAANGSTLEHLEEYRAALELATRL 993 (1238)
T ss_pred HHhccchHHHHHHhhhhhhhHHHHHHHHhcCcch-hHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 55566655544433 3333344544 667777777777777777777666554
No 110
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.58 E-value=2.8e-06 Score=81.02 Aligned_cols=201 Identities=11% Similarity=0.032 Sum_probs=147.5
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--KNVFTWTSMIDGYGKNGNPNQALELFCM 340 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (499)
|-...|..+++.+.. +.-++.+|...|+-.+|..+..+-.+ |++..|..+.+......-+++|.++.+.
T Consensus 412 GitksAl~I~Erlem---------w~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~ 482 (777)
T KOG1128|consen 412 GITKSALVIFERLEM---------WDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNY 482 (777)
T ss_pred chHHHHHHHHHhHHH---------HHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhh
Confidence 555566666665433 34466677777777777776655443 5666677666666555556666666655
Q ss_pred HHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-CC
Q 010837 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-K-PN 417 (499)
Q Consensus 341 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~~ 417 (499)
.... .-..+.......++++++.+.|+.-. .+.| ...+|-.+..+..+.+++..|.+.|..... . .+
T Consensus 483 ~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl---~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~ 552 (777)
T KOG1128|consen 483 ISAR-------AQRSLALLILSNKDFSEADKHLERSL---EINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN 552 (777)
T ss_pred hhHH-------HHHhhccccccchhHHHHHHHHHHHh---hcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc
Confidence 3321 11112222234678888888888766 3444 567788888888999999999999988876 4 45
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 418 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
...||.+-.+|.+.|+-.+|...++++.+.+-++ ...|...+-...+.|.+++|.+.+.++.+..
T Consensus 553 ~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 553 AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-WQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-CeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 6799999999999999999999999999999666 8899999999999999999999999887543
No 111
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.57 E-value=1e-05 Score=80.83 Aligned_cols=165 Identities=10% Similarity=0.050 Sum_probs=114.1
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHH
Q 010837 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY-VTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYAC 391 (499)
Q Consensus 314 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~ 391 (499)
++..+..|.....+.|+.++|..+++...+ ..|+. .....+..++.+.+++++|....++.. ...| +......
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l---~~~p~~~~~~~~ 159 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYF---SGGSSSAREILL 159 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHh---hcCCCCHHHHHH
Confidence 467777788888888888888888888877 45554 456667777888888888888888887 3355 5666777
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCCh
Q 010837 392 MVDLLGRAGSLEQALKFVLEMPE-KPN-SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKW 469 (499)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 469 (499)
+..++.+.|++++|..+|+++.. .|+ ..++..+..++...|+.++|...|+++++....- ...|+.++. +.
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~-~~~~~~~~~------~~ 232 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG-ARKLTRRLV------DL 232 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc-hHHHHHHHH------HH
Confidence 77888888888888888888875 333 6778888888888888888888888887765544 344444332 22
Q ss_pred HHHHHHHHHHHhCCCccCccc
Q 010837 470 DSVTELREKMKLRGVLKDTGC 490 (499)
Q Consensus 470 ~~A~~~~~~~~~~~~~~~~~~ 490 (499)
..-..+++++.-.+.-.+...
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~ 253 (694)
T PRK15179 233 NADLAALRRLGVEGDGRDVPV 253 (694)
T ss_pred HHHHHHHHHcCcccccCCCce
Confidence 333445555544443333333
No 112
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.57 E-value=1.9e-06 Score=68.52 Aligned_cols=99 Identities=10% Similarity=-0.015 Sum_probs=50.5
Q ss_pred HHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcC
Q 010837 356 ALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHD 432 (499)
Q Consensus 356 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~ 432 (499)
...++...|++++|...|+... ...| +...|..+..++.+.|++++|+..|++... +.+...+..+..++...|
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al---~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLV---MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHH---HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 3444445555555555555554 2233 444555555555555555555555555544 234445555555555555
Q ss_pred CHHHHHHHHHHHHhcCCCCCCchhHH
Q 010837 433 DVEMANIAANEIFKLNANDRPGAYVA 458 (499)
Q Consensus 433 ~~~~a~~~~~~~~~~~~~~~~~~~~~ 458 (499)
+.++|+..++..++..|.. +..+..
T Consensus 107 ~~~eAi~~~~~Al~~~p~~-~~~~~~ 131 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYAD-ASWSEI 131 (144)
T ss_pred CHHHHHHHHHHHHHhCCCC-hHHHHH
Confidence 5555555555555555544 344433
No 113
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.56 E-value=3.8e-06 Score=78.08 Aligned_cols=248 Identities=16% Similarity=0.141 Sum_probs=173.3
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCC---hhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCCh
Q 010837 224 ISGFMSQGFVEDAEEIFRKTVEKD---IVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKI 300 (499)
Q Consensus 224 ~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 300 (499)
..-+.+.|++.+|.-.|+..++.| ...|..|-...... +.-..|+..+.+..+..+. +....-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaEN-E~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAEN-ENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhc-cchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhH
Confidence 344678888888888888777433 34555555555555 4444677777777765432 455666777788888888
Q ss_pred HHHHHHHHhcCCCCh-hHHHHHH---------HHHHhCCChhHHHHHHHHH-HHcCCCCCHHHHHHHHHHHcccCcHHHH
Q 010837 301 DDARRVFDHMQQKNV-FTWTSMI---------DGYGKNGNPNQALELFCMM-QECCVQPNYVTFLGALSACGHAGLVDKG 369 (499)
Q Consensus 301 ~~a~~~~~~~~~~~~-~~~~~l~---------~~~~~~g~~~~a~~~~~~m-~~~~~~p~~~~~~~ll~~~~~~~~~~~a 369 (499)
..|...++....... ..|...- ..+.....+....++|-++ ...+..+|......|.-.|--.|++++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 889888887643110 0010000 1112222334455566555 4444457888888888888899999999
Q ss_pred HHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010837 370 REIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPN-SDVWAALLSSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 370 ~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (499)
.+.|+.+. .++| |..+||.|.-.+....+.++|+.-|.++.+ +|. +.+...|.-.|...|.+++|...|-.++.
T Consensus 450 iDcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999998 5678 788999999999999999999999999988 665 45667788899999999999999888776
Q ss_pred cCCC---------CCCchhHHHHHHHHhcCChHHHHHHH
Q 010837 447 LNAN---------DRPGAYVALSNTLAAAGKWDSVTELR 476 (499)
Q Consensus 447 ~~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~~ 476 (499)
.... .+..+|.+|=.++...++.|.+.++.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 4332 11247778878888888877555543
No 114
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.55 E-value=1.4e-06 Score=69.35 Aligned_cols=108 Identities=13% Similarity=0.016 Sum_probs=92.8
Q ss_pred HHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Q 010837 370 REIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKL 447 (499)
Q Consensus 370 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 447 (499)
+.++++.. .+.|+. +..+...+...|++++|...|+.... +.+...|..+..++...|++++|...|+++.+.
T Consensus 13 ~~~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34555555 445653 55677888999999999999999876 457889999999999999999999999999999
Q ss_pred CCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 448 NANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 448 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
+|.. +..+..++.++.+.|++++|...++...+..
T Consensus 88 ~p~~-~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 DASH-PEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9988 9999999999999999999999999987743
No 115
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.55 E-value=4.4e-06 Score=73.32 Aligned_cols=181 Identities=13% Similarity=0.008 Sum_probs=123.3
Q ss_pred ChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCC--CchhHHHHHHHHHhcCChHHHHHHHHhcCC--C-Chh---HH
Q 010837 247 DIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE--DVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVF---TW 318 (499)
Q Consensus 247 ~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~---~~ 318 (499)
....+......+... ++++.|...++.+.+..... ....+..+..++.+.|++++|...++++.+ | +.. .+
T Consensus 32 ~~~~~~~~g~~~~~~-~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDS-GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 344555555566555 88899999999998865421 124667788999999999999999999875 3 222 45
Q ss_pred HHHHHHHHhC--------CChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHH
Q 010837 319 TSMIDGYGKN--------GNPNQALELFCMMQECCVQPNY-VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY 389 (499)
Q Consensus 319 ~~l~~~~~~~--------g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~ 389 (499)
..+..++... |+.++|.+.++++.+. .|+. .....+.... .. ..... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~----~~------~~~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMD----YL------RNRLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHH----HH------HHHHH---------HHH
Confidence 5555666554 7789999999999875 3443 2222221110 00 00000 112
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCC-CC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCC
Q 010837 390 ACMVDLLGRAGSLEQALKFVLEMPE-KP----NSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449 (499)
Q Consensus 390 ~~l~~~~~~~~~~~~a~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (499)
..+...|.+.|++++|+..+++... .| ....+..+..++...|++++|...++.+....+
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3466778899999999999988775 23 346888899999999999999998888776554
No 116
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.53 E-value=0.00017 Score=62.98 Aligned_cols=66 Identities=18% Similarity=0.237 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHH---HHHHhCCChhhHHHHHHHHHHcCCCCCh
Q 010837 79 NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMI---AGYLKNGQVEESLSLVRKLVSSGERPDG 146 (499)
Q Consensus 79 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 146 (499)
++.-.-.+...+...|++..|+.-|....+-|+..|.++. ..|...|+...|+.=|.+.++. +||-
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF 105 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDF 105 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccH
Confidence 4455556677777788888888888887777777666654 4567777777777777777663 5653
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.53 E-value=2e-05 Score=66.34 Aligned_cols=147 Identities=18% Similarity=0.122 Sum_probs=70.5
Q ss_pred HHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcH
Q 010837 290 LVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366 (499)
Q Consensus 290 l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 366 (499)
+-..+...|+-+....+...... .|.......+....+.|++.+|...+.+.... -++|..+|+.+.-+|.+.|+.
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~ 150 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRF 150 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccCh
Confidence 33444444444444444444221 13333444555555555555555555555443 244555555555555555555
Q ss_pred HHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHhhcCCHHHHHHH
Q 010837 367 DKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPEK--PNSDVWAALLSSCRLHDDVEMANIA 440 (499)
Q Consensus 367 ~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~ 440 (499)
+.|..-|.... .+.| +...++.|...|.-.|+.+.|..++...... -|...-..+.......|++++|..+
T Consensus 151 ~~Ar~ay~qAl---~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 151 DEARRAYRQAL---ELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred hHHHHHHHHHH---HhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhh
Confidence 55555555554 2223 3334455555555555555555555444431 2344444444455555555555444
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.52 E-value=1.1e-05 Score=67.93 Aligned_cols=149 Identities=13% Similarity=0.127 Sum_probs=107.3
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCC
Q 010837 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGS 401 (499)
Q Consensus 323 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~ 401 (499)
..|...|+++.+....+.+.. |. ..+...++.+++...++...+ ..| +...|..|...|...|+
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~---~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR---ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH---HCCCCHHHHHHHHHHHHHCCC
Confidence 456677777765444322221 10 122235666777777777763 244 77888888888889999
Q ss_pred HHHHHHHHHhCCC--CCCHHHHHHHHHHH-hhcCC--HHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHH
Q 010837 402 LEQALKFVLEMPE--KPNSDVWAALLSSC-RLHDD--VEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476 (499)
Q Consensus 402 ~~~a~~~~~~~~~--~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 476 (499)
+++|...|++... +.+...+..+..++ ...|+ .++|.++++++++.+|.. ..++..++..+.+.|++++|...+
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~-~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANE-VTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCC-hhHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999988776 34667777777764 56666 588999999999988887 888888999999999999999999
Q ss_pred HHHHhCCCccC
Q 010837 477 EKMKLRGVLKD 487 (499)
Q Consensus 477 ~~~~~~~~~~~ 487 (499)
+++.+..-.-+
T Consensus 168 ~~aL~l~~~~~ 178 (198)
T PRK10370 168 QKVLDLNSPRV 178 (198)
T ss_pred HHHHhhCCCCc
Confidence 98877654433
No 119
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.44 E-value=0.0026 Score=63.82 Aligned_cols=384 Identities=11% Similarity=0.073 Sum_probs=215.3
Q ss_pred CCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCC--CChHHHHHHHHHHHcCCChhHHHHHhccCC-CCC-----hHH
Q 010837 42 PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVK--PNTNISIKLLILHLKCGALKYAGQMFDELP-QRT-----LSA 113 (499)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~-----~~~ 113 (499)
+.+...|+.++.-- -.--+++.++..+.+++ -|+...+..++++...+-..+-+++++++. +++ ...
T Consensus 949 R~D~~LW~~VL~e~-----n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nL 1023 (1666)
T KOG0985|consen 949 RSDPDLWAKVLNEE-----NPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNL 1023 (1666)
T ss_pred ccChHHHHHHHhcc-----ChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhh
Confidence 45666677666321 11224666777766553 355666677788888888888888888775 332 223
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHH
Q 010837 114 YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALV 193 (499)
Q Consensus 114 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 193 (499)
-|.||-...+.. ...+.+..+++-..+ .|+... .+ ...+-.++|..+|+.. ..+....+.|+
T Consensus 1024 QnLLiLtAikad-~trVm~YI~rLdnyD-a~~ia~------ia-----i~~~LyEEAF~ifkkf-----~~n~~A~~VLi 1085 (1666)
T KOG0985|consen 1024 QNLLILTAIKAD-RTRVMEYINRLDNYD-APDIAE------IA-----IENQLYEEAFAIFKKF-----DMNVSAIQVLI 1085 (1666)
T ss_pred hhhHHHHHhhcC-hHHHHHHHHHhccCC-chhHHH------HH-----hhhhHHHHHHHHHHHh-----cccHHHHHHHH
Confidence 445555544443 344555555554332 233222 11 3444456666666643 33444444444
Q ss_pred HHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHH
Q 010837 194 DSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHC 273 (499)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~ 273 (499)
+ ..+.++.|.++-++..+| ..|+.+..+-.+.|.+.+|.+-|-+.. |+..|..++....+. |.+++-..++.
T Consensus 1086 e---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyikad--Dps~y~eVi~~a~~~-~~~edLv~yL~ 1157 (1666)
T KOG0985|consen 1086 E---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKAD--DPSNYLEVIDVASRT-GKYEDLVKYLL 1157 (1666)
T ss_pred H---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhcC--CcHHHHHHHHHHHhc-CcHHHHHHHHH
Confidence 3 345677777777776554 357778888888888888877776544 444566777777666 77777777777
Q ss_pred HHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC-----------------------CChhHHHHHHHHHHhCCC
Q 010837 274 QLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-----------------------KNVFTWTSMIDGYGKNGN 330 (499)
Q Consensus 274 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------------------~~~~~~~~l~~~~~~~g~ 330 (499)
..++..-.|... +.|+-+|++.+++.+.++++..-.. .++.-|..|...+...|+
T Consensus 1158 MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~Lge 1235 (1666)
T KOG0985|consen 1158 MARKKVREPYID--SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGE 1235 (1666)
T ss_pred HHHHhhcCccch--HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 666665544433 4577778888877776665432110 133344555555555555
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHH
Q 010837 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP--KMEHYACMVDLLGRAGSLEQALKF 408 (499)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~ 408 (499)
++.|.+.-++ ..+..||..+-.+|...+.+.-|. -+|+.. ...-..-|+.-|-..|-+++.+.+
T Consensus 1236 yQ~AVD~aRK------Ans~ktWK~VcfaCvd~~EFrlAQ--------iCGL~iivhadeLeeli~~Yq~rGyFeElIsl 1301 (1666)
T KOG0985|consen 1236 YQGAVDAARK------ANSTKTWKEVCFACVDKEEFRLAQ--------ICGLNIIVHADELEELIEYYQDRGYFEELISL 1301 (1666)
T ss_pred HHHHHHHhhh------ccchhHHHHHHHHHhchhhhhHHH--------hcCceEEEehHhHHHHHHHHHhcCcHHHHHHH
Confidence 5555544332 224456666666665554443321 123332 334456677777778888888888
Q ss_pred HHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-------CCchhHHHHHHHHhcCChHHHH
Q 010837 409 VLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND-------RPGAYVALSNTLAAAGKWDSVT 473 (499)
Q Consensus 409 ~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~ 473 (499)
++.... +.....|+-|.-.|.+- ++++..+.++-....---| ....|..++-.|.+-..+|.|.
T Consensus 1302 ~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1302 LEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred HHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 777665 34445555555445443 3444444443332211000 1345666666666665555543
No 120
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.40 E-value=0.0018 Score=60.38 Aligned_cols=435 Identities=10% Similarity=0.063 Sum_probs=251.3
Q ss_pred CCCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC--CCChHHHHHH
Q 010837 40 SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP--QRTLSAYNYM 117 (499)
Q Consensus 40 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l 117 (499)
.+|.|..+|..||+-+... ..+++++.++++... ++-....|..-+..-.+..+++..+++|.+-. .-++..|...
T Consensus 15 ~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lY 92 (656)
T KOG1914|consen 15 ENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLY 92 (656)
T ss_pred cCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHH
Confidence 3578999999999987666 999999999999865 35577889999999999999999999999755 3577888887
Q ss_pred HHHHHhC-CChhh----HHHHHHHH-HHcCCCCChh-hHH---HHhhhcccccc-CCcCcchhHHHHHHHHHHcCCCC--
Q 010837 118 IAGYLKN-GQVEE----SLSLVRKL-VSSGERPDGY-TFS---MILKASTCCRS-NVPLPRNLGRMVHAQILKCDVKA-- 184 (499)
Q Consensus 118 i~~~~~~-g~~~~----a~~~~~~m-~~~g~~p~~~-~~~---~ll~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~-- 184 (499)
|+.--+. |+... ..+.|+-. .+-|+.+-.. .|+ ..++..-..+. ......+..+.+++.+...-+.-
T Consensus 93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE 172 (656)
T KOG1914|consen 93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE 172 (656)
T ss_pred HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence 7654432 33222 23334433 3335444332 222 33332200000 12223445556666655322111
Q ss_pred ----chhHHHHHHHH-------HHhCCChhHHHHHHHhccC------C--------C-------hHhHHHHHHHHHhCCC
Q 010837 185 ----DDVLYTALVDS-------YVKGGKTSYARIVFDMMLE------K--------N-------VICSTSMISGFMSQGF 232 (499)
Q Consensus 185 ----~~~~~~~l~~~-------~~~~g~~~~A~~~~~~~~~------~--------~-------~~~~~~l~~~~~~~g~ 232 (499)
|-..|..=|+. --+...+..|.++++++.. . + +..|-.+|..=..++-
T Consensus 173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL 252 (656)
T KOG1914|consen 173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPL 252 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCc
Confidence 11111111111 1123445666666666521 0 0 1123333332111110
Q ss_pred H--------HHHHHHHHhcC-----CCChh-hHHHHHHHHhc---Chh-------hHHHHHHHHHHHHHcccCCCchhHH
Q 010837 233 V--------EDAEEIFRKTV-----EKDIV-VYNAMIEGYSI---SIE-------TARKALEVHCQLIKNVFFEDVKLGS 288 (499)
Q Consensus 233 ~--------~~a~~~~~~~~-----~~~~~-~~~~ll~~~~~---~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~ 288 (499)
- ....-.+++.. .|+.. .|...+...++ ..+ ..+++..+++..+..-..-+..+|.
T Consensus 253 ~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~ 332 (656)
T KOG1914|consen 253 RTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYF 332 (656)
T ss_pred ccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 00111111111 11110 01111111110 011 1334455555544433333333333
Q ss_pred HHHHHHHhcC---ChHHHHHHHHhcCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 010837 289 ALVDMYAKCG---KIDDARRVFDHMQQ----KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP-NYVTFLGALSAC 360 (499)
Q Consensus 289 ~l~~~~~~~g---~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~ 360 (499)
.+.+.--..- ..+.....++++.. .-..+|-.+|..-.+..-+..|..+|.+..+.+..+ +....++++.-+
T Consensus 333 ~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 333 ALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 3332111111 23444455555443 233467778888888888999999999999998888 677888888877
Q ss_pred cccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHhhcCCHH
Q 010837 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK-----PNSDVWAALLSSCRLHDDVE 435 (499)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~ 435 (499)
|. ++.+-|.++|+.-.+++|-.| .--...++-+...++-..+..+|++...+ .....|..++.--..-||..
T Consensus 413 cs-kD~~~AfrIFeLGLkkf~d~p--~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~ 489 (656)
T KOG1914|consen 413 CS-KDKETAFRIFELGLKKFGDSP--EYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLN 489 (656)
T ss_pred hc-CChhHHHHHHHHHHHhcCCCh--HHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHH
Confidence 65 899999999999887665444 33456777788899999999999998874 23479999999999999999
Q ss_pred HHHHHHHHHHhcCC---CCCCchhHHHHHHHHhcCChHHHHHHHHHH
Q 010837 436 MANIAANEIFKLNA---NDRPGAYVALSNTLAAAGKWDSVTELREKM 479 (499)
Q Consensus 436 ~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 479 (499)
.+.++-+++...-+ ++....-..++.-|.-.+.+..-..=++.+
T Consensus 490 si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l 536 (656)
T KOG1914|consen 490 SILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL 536 (656)
T ss_pred HHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence 99999888877655 333455566677776666655544444443
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=1.8e-05 Score=75.69 Aligned_cols=190 Identities=15% Similarity=0.097 Sum_probs=159.7
Q ss_pred cCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010837 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359 (499)
Q Consensus 280 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 359 (499)
.+|-...-..+...+.+.|-...|..+|++. ..|...+.+|+..|+..+|..+..+..+ -+||...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3444445567888899999999999999974 5788889999999999999999988877 48999999999999
Q ss_pred HcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHH
Q 010837 360 CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMA 437 (499)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a 437 (499)
.....-+++|.++.+....+ .-..+.....+.++++++.+.|+.-.+ +-...+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 88888899999998876632 112233333457999999999988766 34567999999999999999999
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 010837 438 NIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 485 (499)
.+.|.......|.. ...|+.+..+|.+.|+-.+|...+++..+-+..
T Consensus 539 v~aF~rcvtL~Pd~-~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~ 585 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDN-AEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ 585 (777)
T ss_pred HHHHHHHhhcCCCc-hhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC
Confidence 99999999999998 999999999999999999999999999887743
No 122
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.40 E-value=0.00013 Score=74.90 Aligned_cols=207 Identities=15% Similarity=0.196 Sum_probs=138.5
Q ss_pred hhHHHHHHHHHHHHHcc-cCC---CchhHHHHHHHHHhcCChHHHHHHHHhcCCC--ChhHHHHHHHHHHhCCChhHHHH
Q 010837 263 ETARKALEVHCQLIKNV-FFE---DVKLGSALVDMYAKCGKIDDARRVFDHMQQK--NVFTWTSMIDGYGKNGNPNQALE 336 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~ 336 (499)
+..++|.++.++.+..- +.- -..+|.++++.-..-|.-+...++|+++.+- ....|..|...|.+.+.+++|.+
T Consensus 1472 sEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~e 1551 (1710)
T KOG1070|consen 1472 SEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADE 1551 (1710)
T ss_pred hhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHH
Confidence 55555555555554431 111 1224555555555556667777788777652 34567778888888888888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 010837 337 LFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK---MEHYACMVDLLGRAGSLEQALKFVLEMP 413 (499)
Q Consensus 337 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 413 (499)
+++.|.+. +.-....|...+..+.+.++-+.|..++.++.+. -|. .......+..-.+.|+.+++..+|+...
T Consensus 1552 ll~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~---lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll 1627 (1710)
T KOG1070|consen 1552 LLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS---LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLL 1627 (1710)
T ss_pred HHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh---cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHH
Confidence 88888775 4455667888888888888888888888887732 332 4445555666677888888888888777
Q ss_pred C--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCC--CchhHHHHHHHHhcCChHHHH
Q 010837 414 E--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR--PGAYVALSNTLAAAGKWDSVT 473 (499)
Q Consensus 414 ~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 473 (499)
. +.....|+..++.-.++|+.+.++.+|++++..+..+. ...|...+..--+.|+-+.++
T Consensus 1628 ~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1628 SAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred hhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 6 33567888888888888888888888888888777652 224455555445556544333
No 123
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.37 E-value=6.6e-06 Score=65.09 Aligned_cols=96 Identities=8% Similarity=0.000 Sum_probs=45.0
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhh
Q 010837 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRL 430 (499)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~ 430 (499)
...+...+...|+.++|...++.+... + +.+...+..+...+.+.|++++|...+++... +.+...+..+...+..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAY-D-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh-C-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 333444444555555555555554421 1 11344444455555555555555555554433 2233444444445555
Q ss_pred cCCHHHHHHHHHHHHhcCCC
Q 010837 431 HDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~ 450 (499)
.|++++|...+++..+..+.
T Consensus 98 ~g~~~~A~~~~~~al~~~p~ 117 (135)
T TIGR02552 98 LGEPESALKALDLAIEICGE 117 (135)
T ss_pred cCCHHHHHHHHHHHHHhccc
Confidence 55555555555555554443
No 124
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.34 E-value=0.00011 Score=67.43 Aligned_cols=112 Identities=17% Similarity=0.154 Sum_probs=62.4
Q ss_pred ccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHhhcCCHHHHH
Q 010837 362 HAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPN-SDVWAALLSSCRLHDDVEMAN 438 (499)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~ 438 (499)
..|++++|+..++.+.. -.| |+.......+.+.+.++.++|.+.++++.. .|+ ....-.+..++.+.|++++|+
T Consensus 318 ~~~~~d~A~~~l~~L~~---~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIA---AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHH
Confidence 44566666666666552 233 444444555556666666666666666555 344 334444555566666666666
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHH
Q 010837 439 IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477 (499)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 477 (499)
.++++.....|+. +..|..|.++|...|+..+|....-
T Consensus 395 ~~L~~~~~~~p~d-p~~w~~LAqay~~~g~~~~a~~A~A 432 (484)
T COG4783 395 RILNRYLFNDPED-PNGWDLLAQAYAELGNRAEALLARA 432 (484)
T ss_pred HHHHHHhhcCCCC-chHHHHHHHHHHHhCchHHHHHHHH
Confidence 6666666666555 5666666666666555555544433
No 125
>PLN02789 farnesyltranstransferase
Probab=98.34 E-value=8.9e-05 Score=67.22 Aligned_cols=125 Identities=10% Similarity=0.002 Sum_probs=55.7
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhcCC--CChh-hHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHH
Q 010837 219 CSTSMISGFMSQGFVEDAEEIFRKTVE--KDIV-VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYA 295 (499)
Q Consensus 219 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 295 (499)
++..+-..+...+..++|+.++.++++ |+.. .|+.--..+...+...++++..++.+.+...+ +..+|+.....+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence 344444455556666666666666653 2221 22222222222212345555555555554332 2223333332333
Q ss_pred hcCCh--HHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 010837 296 KCGKI--DDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQEC 344 (499)
Q Consensus 296 ~~g~~--~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (499)
+.|+. +++..+++++.+ .|..+|+...-++...|+++++++.++++.+.
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 33331 344444444432 24444555545555555555555555555544
No 126
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.34 E-value=0.0041 Score=61.69 Aligned_cols=217 Identities=10% Similarity=0.028 Sum_probs=138.2
Q ss_pred CccCCCCcccccccCCCCCcchHHHHHHhh--hCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHh
Q 010837 26 NQTFPPKLQNYDSLSNPLTATSLPSALQHY--INSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMF 103 (499)
Q Consensus 26 ~~~~~~~l~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 103 (499)
.++|...+.....+-.......|..+++++ .+.|..++|..+++.....+.. |..+...+-..|.+.++.++|..++
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Y 100 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLY 100 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHH
Confidence 444555555555555555556677777766 4789999999999988777644 8899999999999999999999999
Q ss_pred ccCCC--CChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcC-----cchhHHHHHHH
Q 010837 104 DELPQ--RTLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPL-----PRNLGRMVHAQ 176 (499)
Q Consensus 104 ~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~-----~~~~a~~~~~~ 176 (499)
++..+ |+......+..+|+|.+++.+-.++=-+|-+. .+-+.+.|=.++............ -...|....+.
T Consensus 101 e~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~ 179 (932)
T KOG2053|consen 101 ERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQK 179 (932)
T ss_pred HHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHH
Confidence 99986 55455556667788888776544443333332 233444544555444322111111 12345566666
Q ss_pred HHHcC-CCCchhHHHHHHHHHHhCCChhHHHHHHHh-c----cCCChHhHHHHHHHHHhCCCHHHHHHHHHhcC
Q 010837 177 ILKCD-VKADDVLYTALVDSYVKGGKTSYARIVFDM-M----LEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244 (499)
Q Consensus 177 ~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 244 (499)
+.+.+ -.-+..-.-.-...+-..|++++|.+++.. . ...+...-+.-+..+...+++.+..++-.++.
T Consensus 180 ~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll 253 (932)
T KOG2053|consen 180 LLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL 253 (932)
T ss_pred HhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 65544 222222222333455678889999998833 2 22344555566777888888888887777766
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.34 E-value=4.4e-05 Score=64.31 Aligned_cols=122 Identities=10% Similarity=0.052 Sum_probs=58.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHccc
Q 010837 287 GSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363 (499)
Q Consensus 287 ~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 363 (499)
.+..+....+.|++..|...|++... +|...|+.+.-+|.+.|++++|..-|.+..+. ...+...++.+.-.+.-.
T Consensus 103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L-~~~~p~~~nNlgms~~L~ 181 (257)
T COG5010 103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALEL-APNEPSIANNLGMSLLLR 181 (257)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh-ccCCchhhhhHHHHHHHc
Confidence 33344555555555555555555443 24445555555555555555555555555443 122333444444444445
Q ss_pred CcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010837 364 GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411 (499)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 411 (499)
|+.+.|..++...... -.-+..+-..|.......|++++|.++...
T Consensus 182 gd~~~A~~lll~a~l~--~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 182 GDLEDAETLLLPAYLS--PAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred CCHHHHHHHHHHHHhC--CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 5555555555544421 111344444455555555555555554443
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.34 E-value=7.3e-05 Score=75.73 Aligned_cols=232 Identities=11% Similarity=0.069 Sum_probs=132.1
Q ss_pred chhHHHHHHHHHHhCCChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcC
Q 010837 185 DDVLYTALVDSYVKGGKTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS 261 (499)
Q Consensus 185 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~ 261 (499)
+...+..|+..+...+++++|.++.+...+. ....|..+...+.+.++.+++..+ .+. ......
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l-----------~~~~~~ 96 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLI-----------DSFSQN 96 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhh-----------hhcccc
Confidence 4457778888888888888888888866443 234455555567777776666554 221 111111
Q ss_pred hhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCChhHHHHHH
Q 010837 262 IETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNPNQALELF 338 (499)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~ 338 (499)
..+..+..+...+.+.+ -+...+..+..+|-+.|+.++|..+++++.+ .|+.+.|.+...|... +.++|.+++
T Consensus 97 -~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~ 172 (906)
T PRK14720 97 -LKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYL 172 (906)
T ss_pred -cchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHH
Confidence 22222333333333322 2334566677788888888888888887765 3667777777777777 888888877
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC
Q 010837 339 CMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN 417 (499)
Q Consensus 339 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 417 (499)
.+.... +...+++..+..+|.++.. ..| +...+..+.+.....-. ..--
T Consensus 173 ~KAV~~---------------~i~~kq~~~~~e~W~k~~~---~~~~d~d~f~~i~~ki~~~~~------------~~~~ 222 (906)
T PRK14720 173 KKAIYR---------------FIKKKQYVGIEEIWSKLVH---YNSDDFDFFLRIERKVLGHRE------------FTRL 222 (906)
T ss_pred HHHHHH---------------HHhhhcchHHHHHHHHHHh---cCcccchHHHHHHHHHHhhhc------------cchh
Confidence 776553 3344455555555655551 123 22222221111111100 1112
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 010837 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464 (499)
Q Consensus 418 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 464 (499)
+.++..+-..|...++++++..+++.+++..+.+ ..+...++.+|.
T Consensus 223 ~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n-~~a~~~l~~~y~ 268 (906)
T PRK14720 223 VGLLEDLYEPYKALEDWDEVIYILKKILEHDNKN-NKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcc-hhhHHHHHHHHH
Confidence 2344444455666667777777777777777665 566666666665
No 129
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.33 E-value=0.00017 Score=72.29 Aligned_cols=142 Identities=13% Similarity=0.125 Sum_probs=112.8
Q ss_pred cCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010837 280 FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356 (499)
Q Consensus 280 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 356 (499)
...++..+..|.....+.|++++|..+++...+ | +......+..++.+.+++++|+..+++..... +-+......+
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~ 160 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLE 160 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHH
Confidence 444577888889999999999999999998875 4 45677778889999999999999999998853 3345566777
Q ss_pred HHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHH
Q 010837 357 LSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALL 425 (499)
Q Consensus 357 l~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~ 425 (499)
..++.+.|++++|..+|+++.. -.| +...+..+..++...|+.++|...|++..+ .+....|+..+
T Consensus 161 a~~l~~~g~~~~A~~~y~~~~~---~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~ 229 (694)
T PRK15179 161 AKSWDEIGQSEQADACFERLSR---QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL 229 (694)
T ss_pred HHHHHHhcchHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH
Confidence 7888899999999999999984 234 467888888899999999999999998876 35555555443
No 130
>PLN02789 farnesyltranstransferase
Probab=98.33 E-value=7.2e-05 Score=67.81 Aligned_cols=200 Identities=15% Similarity=0.108 Sum_probs=107.7
Q ss_pred cChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcC-ChHHHHHHHHhcCC---CChhHHHHHHHHHHhCCCh--hH
Q 010837 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCG-KIDDARRVFDHMQQ---KNVFTWTSMIDGYGKNGNP--NQ 333 (499)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~g~~--~~ 333 (499)
...+..+.|+.....+++..+. +..+|+.-..++.+.| ++++++..++++.+ .+..+|+.....+.+.|+. ++
T Consensus 48 ~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~ 126 (320)
T PLN02789 48 ASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANK 126 (320)
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHH
Confidence 3335666777777766664432 2234444444445555 45677777766654 2444555554444455542 55
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhc---CCH----HHH
Q 010837 334 ALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRA---GSL----EQA 405 (499)
Q Consensus 334 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---~~~----~~a 405 (499)
++.+++++.+.. +-|..+|+...-++...|+++++++.++++.+. .| +...|+.....+.+. |+. +++
T Consensus 127 el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~---d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 127 ELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE---DVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---CCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 666666666543 335556666666666667777777777777632 23 444454444443333 222 344
Q ss_pred HHHHHhCCC--CCCHHHHHHHHHHHhhc----CCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh
Q 010837 406 LKFVLEMPE--KPNSDVWAALLSSCRLH----DDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465 (499)
Q Consensus 406 ~~~~~~~~~--~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (499)
++...++.. +.|...|+.+...+... +...+|.+++.+..+.++.. +.....|+..|..
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s-~~al~~l~d~~~~ 267 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH-VFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc-HHHHHHHHHHHHh
Confidence 555434333 23445666665555542 23345666666666655554 5566666666664
No 131
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.31 E-value=0.00015 Score=66.55 Aligned_cols=136 Identities=15% Similarity=0.073 Sum_probs=71.8
Q ss_pred HHhcCChHHHHHHHHhcCC--C-ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHcccCcHHHH
Q 010837 294 YAKCGKIDDARRVFDHMQQ--K-NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN-YVTFLGALSACGHAGLVDKG 369 (499)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a 369 (499)
+...|.+++|+..++.+.+ | |+..+....+.+...|+..+|.+.++++... .|+ ......+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 3445555666665555542 2 4444455555566666666666666665553 333 33334445555666666666
Q ss_pred HHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 010837 370 REIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448 (499)
Q Consensus 370 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (499)
+.+++.... ..+-|...|..|..+|...|+..++..-.. .++...|+++.|...+....+..
T Consensus 394 i~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~A---------------E~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 394 IRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARA---------------EGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHH---------------HHHHhCCCHHHHHHHHHHHHHhc
Confidence 666655552 222255556666666666665555544332 23445566666666555555443
No 132
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.31 E-value=0.00022 Score=70.88 Aligned_cols=178 Identities=10% Similarity=-0.030 Sum_probs=123.5
Q ss_pred ChhHHHHHhccCCCCCh---HHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHH
Q 010837 95 ALKYAGQMFDELPQRTL---SAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGR 171 (499)
Q Consensus 95 ~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~ 171 (499)
+...|...|-+..+.|+ ..|..|...|...-+...|.+.|+...+.+ ..|..........+ ....+++.|.
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adty-----ae~~~we~a~ 546 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTY-----AEESTWEEAF 546 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHh-----hccccHHHHH
Confidence 36666666665554443 478999999988889999999999988753 34555667777777 8888889888
Q ss_pred HHHHHHHHcCC-CCchhHHHHHHHHHHhCCChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcC--C
Q 010837 172 MVHAQILKCDV-KADDVLYTALVDSYVKGGKTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTV--E 245 (499)
Q Consensus 172 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~ 245 (499)
.+.-...+... ..-..-|-.+.-.|...++...|+.-|+...+- |...|..+..+|...|++..|.++|.+.. +
T Consensus 547 ~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr 626 (1238)
T KOG1127|consen 547 EICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR 626 (1238)
T ss_pred HHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC
Confidence 88322222110 000111222444567888999999999888663 67789999999999999999999997765 5
Q ss_pred CChhhHHHHHHHHhcChhhHHHHHHHHHHHHHc
Q 010837 246 KDIVVYNAMIEGYSISIETARKALEVHCQLIKN 278 (499)
Q Consensus 246 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~ 278 (499)
|+..--........+..|.+.++...+..+...
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 554433334444444558888888888776653
No 133
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.30 E-value=1.5e-05 Score=73.66 Aligned_cols=123 Identities=11% Similarity=0.099 Sum_probs=91.0
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHh
Q 010837 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCR 429 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~ 429 (499)
....++..+...++++.|..+++++.+. .|+ ....+++.+...++-.+|.+++++... +.+...+......|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3445566666677788888888887733 354 344567777777777788888777665 235566666667778
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 430 LHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 430 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
+.++++.|+.+.+++.+..|.. ..+|..|+.+|.+.|++++|+..++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~-f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSE-FETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchh-HHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888888888887 8888888888888888888888887765
No 134
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.29 E-value=1.4e-06 Score=49.82 Aligned_cols=34 Identities=24% Similarity=0.525 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCC
Q 010837 111 LSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERP 144 (499)
Q Consensus 111 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 144 (499)
+.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3589999999999999999999999999999987
No 135
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.29 E-value=1.3e-06 Score=50.38 Aligned_cols=34 Identities=41% Similarity=0.732 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCCh
Q 010837 113 AYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDG 146 (499)
Q Consensus 113 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 146 (499)
+||.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999983
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.27 E-value=3.3e-05 Score=61.70 Aligned_cols=114 Identities=17% Similarity=0.121 Sum_probs=50.0
Q ss_pred cCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCH----HHHHHHHHHHhhcCCHHH
Q 010837 363 AGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPEK-PNS----DVWAALLSSCRLHDDVEM 436 (499)
Q Consensus 363 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~ 436 (499)
.++...+...++.+..+++-.+ .....-.+...+...|++++|...|+.+... |+. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4444555554555543322111 1122223334444555555555555554442 221 122334444555555555
Q ss_pred HHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHH
Q 010837 437 ANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 437 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
|+..++........ +..+...+.+|.+.|++++|...|+.
T Consensus 104 Al~~L~~~~~~~~~--~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIPDEAFK--ALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhccCcchH--HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55555442222221 23444555555555555555555543
No 137
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.25 E-value=3.7e-05 Score=71.07 Aligned_cols=125 Identities=13% Similarity=0.099 Sum_probs=105.0
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCc
Q 010837 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365 (499)
Q Consensus 286 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 365 (499)
....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|.+++++..+. .+-+......-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 33456677778899999999999999888777788889998899999999999998865 24456666666677889999
Q ss_pred HHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 366 VDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
.+.|..+.+++. ...| +..+|..|..+|...|+++.|+..++.+.-
T Consensus 250 ~~lAL~iAk~av---~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 250 YELALEIAKKAV---ELSPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHHHHHHHHHH---HhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 999999999998 5577 566999999999999999999999988874
No 138
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.15 E-value=4.1e-06 Score=48.14 Aligned_cols=33 Identities=42% Similarity=0.689 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPN 349 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 349 (499)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688888888888888888888888888888886
No 139
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.15 E-value=7.1e-05 Score=59.12 Aligned_cols=101 Identities=22% Similarity=0.272 Sum_probs=71.2
Q ss_pred CCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHH
Q 010837 382 MKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVA 458 (499)
Q Consensus 382 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 458 (499)
..| +......+...+...|++++|.+.|+.+.. +.+...+..+...+...|++++|...+++.++.++.. ...+..
T Consensus 12 ~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~-~~~~~~ 90 (135)
T TIGR02552 12 LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD-PRPYFH 90 (135)
T ss_pred CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-hHHHHH
Confidence 344 344455666667777777777777777655 3455667777777777777777777777777777665 677777
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 459 LSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 459 l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
++.+|...|++++|.+.+++..+.+
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 7777777777777777777776643
No 140
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.13 E-value=0.0002 Score=57.21 Aligned_cols=125 Identities=14% Similarity=0.150 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH---HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC--hhHHHH
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY---VTFLGALSACGHAGLVDKGREIFESMERDYSMKPK--MEHYAC 391 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~ 391 (499)
.|..++..+ ..++...+...++.+.+.. +.+. ...-.+...+...|++++|...|+.+... ...|. ......
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 344445554 4778888888888887753 2231 22334456677888888888888888843 32222 223445
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010837 392 MVDLLGRAGSLEQALKFVLEMPEK-PNSDVWAALLSSCRLHDDVEMANIAANEI 444 (499)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 444 (499)
|...+...|++++|+..++..... .....+......+...|+.++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 677788888888888888776552 34456667777888888888888888765
No 141
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.11 E-value=0.00068 Score=57.37 Aligned_cols=151 Identities=15% Similarity=0.110 Sum_probs=115.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHh-
Q 010837 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR- 398 (499)
Q Consensus 320 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~- 398 (499)
.-...|+..|++++|++...... . ......=+..+.+..+++-|.+.++.|. .+ -+..+.+.|..++.+
T Consensus 113 ~aa~i~~~~~~~deAl~~~~~~~----~--lE~~Al~VqI~lk~~r~d~A~~~lk~mq---~i-ded~tLtQLA~awv~l 182 (299)
T KOG3081|consen 113 LAAIIYMHDGDFDEALKALHLGE----N--LEAAALNVQILLKMHRFDLAEKELKKMQ---QI-DEDATLTQLAQAWVKL 182 (299)
T ss_pred HhhHHhhcCCChHHHHHHHhccc----h--HHHHHHHHHHHHHHHHHHHHHHHHHHHH---cc-chHHHHHHHHHHHHHH
Confidence 33467889999999999887622 2 2222223344567789999999999998 22 244566667666654
Q ss_pred ---cCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHH
Q 010837 399 ---AGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473 (499)
Q Consensus 399 ---~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 473 (499)
.+.+.+|.-+|+++.+ .|+..+.+....++...|++++|..+++.++...... +.+...++.+-.-.|...++.
T Consensus 183 a~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~d-petL~Nliv~a~~~Gkd~~~~ 261 (299)
T KOG3081|consen 183 ATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKD-PETLANLIVLALHLGKDAEVT 261 (299)
T ss_pred hccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHhCCChHHH
Confidence 5679999999999998 5899999999999999999999999999999999888 888888888888888776654
Q ss_pred -HHHHHHHh
Q 010837 474 -ELREKMKL 481 (499)
Q Consensus 474 -~~~~~~~~ 481 (499)
+.+.++..
T Consensus 262 ~r~l~QLk~ 270 (299)
T KOG3081|consen 262 ERNLSQLKL 270 (299)
T ss_pred HHHHHHHHh
Confidence 45555543
No 142
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.11 E-value=5.7e-06 Score=47.18 Aligned_cols=33 Identities=36% Similarity=0.673 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC
Q 010837 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQP 348 (499)
Q Consensus 316 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p 348 (499)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467888888888888888888888888777776
No 143
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.11 E-value=6.8e-05 Score=58.79 Aligned_cols=96 Identities=13% Similarity=0.039 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHH
Q 010837 386 MEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL 463 (499)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 463 (499)
....-.+...+...|++++|.++|+-... +-+..-|..|..+|...|++++|+..+..+...+++. +..+..++.++
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~dd-p~~~~~ag~c~ 113 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDA-PQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-chHHHHHHHHH
Confidence 33444556667788889988888887655 4566778888888888889999999999888888866 88888899999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 010837 464 AAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 464 ~~~g~~~~A~~~~~~~~~~ 482 (499)
...|+.+.|.+.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999998888876654
No 144
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.05 E-value=0.00066 Score=69.07 Aligned_cols=237 Identities=16% Similarity=0.133 Sum_probs=132.3
Q ss_pred CCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHH
Q 010837 42 PLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGY 121 (499)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 121 (499)
|.+...+..|+..+...+++++|.++.+...+.. +-....|-.+...+.+.++.+++..+ .++...
T Consensus 28 p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv-------------~~l~~~ 93 (906)
T PRK14720 28 LSKFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL-------------NLIDSF 93 (906)
T ss_pred cchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh-------------hhhhhc
Confidence 5667777788888878888888888888655553 22233333333456666665554443 233333
Q ss_pred HhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCC
Q 010837 122 LKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK 201 (499)
Q Consensus 122 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 201 (499)
....++..+.-+...|... .-+...+-.+..+| ...+..+.+..+++++++.. +-|+.+.|.+...|... +
T Consensus 94 ~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Y-----dk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLY--GENKLALRTLAEAY-----AKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred ccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHH-----HHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 3333443333333333332 11222444444455 56666666666666666655 55566667777777766 7
Q ss_pred hhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHc-cc
Q 010837 202 TSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKN-VF 280 (499)
Q Consensus 202 ~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~-~~ 280 (499)
+++|++++.+... .+...+++.++.+++.++..-++.-+.. -..+.+.+... |.
T Consensus 165 L~KA~~m~~KAV~-----------~~i~~kq~~~~~e~W~k~~~~~~~d~d~--------------f~~i~~ki~~~~~~ 219 (906)
T PRK14720 165 KEKAITYLKKAIY-----------RFIKKKQYVGIEEIWSKLVHYNSDDFDF--------------FLRIERKVLGHREF 219 (906)
T ss_pred HHHHHHHHHHHHH-----------HHHhhhcchHHHHHHHHHHhcCcccchH--------------HHHHHHHHHhhhcc
Confidence 7777766655433 2555566677777776666433322211 11222222221 22
Q ss_pred CCCchhHHHHHHHHHhcCChHHHHHHHHhcCC---CChhHHHHHHHHHH
Q 010837 281 FEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ---KNVFTWTSMIDGYG 326 (499)
Q Consensus 281 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~ 326 (499)
.--..++-.+-..|...++++++..+++.+.+ .|.....-++.+|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 22334555566778888889999999988875 35556666666665
No 145
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.01 E-value=7e-05 Score=54.70 Aligned_cols=93 Identities=20% Similarity=0.228 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhc
Q 010837 389 YACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466 (499)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 466 (499)
+..+...+...|++++|...++++.. +.+...+..+...+...|++++|.+.++...+..+.. ..++..++.++...
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 81 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDN-AKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc-hhHHHHHHHHHHHH
Confidence 45566677778888888888877665 2334567777777788888888888888888877766 56778888888888
Q ss_pred CChHHHHHHHHHHHhC
Q 010837 467 GKWDSVTELREKMKLR 482 (499)
Q Consensus 467 g~~~~A~~~~~~~~~~ 482 (499)
|++++|...++...+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 8888888888776653
No 146
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.0019 Score=54.40 Aligned_cols=186 Identities=13% Similarity=0.123 Sum_probs=122.6
Q ss_pred hhHHHHHHHHHHHHHc---c-cCCCch-hHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHH---HHHHHHHhCCChhHH
Q 010837 263 ETARKALEVHCQLIKN---V-FFEDVK-LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWT---SMIDGYGKNGNPNQA 334 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~l~~~~~~~g~~~~a 334 (499)
...++..+++.++... | ..++.. .|..++-+....|+.+.|..+++++.+.-+.++. .-..-+-..|++++|
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A 105 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA 105 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence 3445556655555432 2 333433 4455666667788888888888887652221111 112223456888999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 335 LELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 335 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
+++|+.+.+.+ +.|..++..=+...-..|+.-+|++-+....+ .+..|...|.-+.+.|...|++++|.-.++++.-
T Consensus 106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll 182 (289)
T KOG3060|consen 106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence 99999988875 55666666555555566776788877777774 3455888888899999999999999888888765
Q ss_pred -CC-CHHHHHHHHHHHhhcC---CHHHHHHHHHHHHhcCCCC
Q 010837 415 -KP-NSDVWAALLSSCRLHD---DVEMANIAANEIFKLNAND 451 (499)
Q Consensus 415 -~~-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~ 451 (499)
.| +...+..+...+.-.| +...+.+.+.+.++..+..
T Consensus 183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 34 4455556666554333 6677888888888887754
No 147
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.0013 Score=55.32 Aligned_cols=182 Identities=13% Similarity=0.134 Sum_probs=134.5
Q ss_pred CChHHHHHHHHhcCC--------CCh-hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHH
Q 010837 298 GKIDDARRVFDHMQQ--------KNV-FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDK 368 (499)
Q Consensus 298 g~~~~a~~~~~~~~~--------~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 368 (499)
.+.++..+++.++.. ++. ..|..++-+....|+.+.|...++++... ++-+...-..-..-+...|++++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchhh
Confidence 455666666665542 233 24556666777889999999999999876 32232222222222455689999
Q ss_pred HHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010837 369 GREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIF 445 (499)
Q Consensus 369 a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (499)
|+++|+.+.++ .| |..+|-.-+-..-..|+.-+|++-+.+..+ -.|...|.-+...|...|++++|.-.+++++
T Consensus 105 A~e~y~~lL~d---dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 105 AIEYYESLLED---DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred HHHHHHHHhcc---CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 99999999954 35 677777666666777887788887776665 3689999999999999999999999999999
Q ss_pred hcCCCCCCchhHHHHHHHHhcC---ChHHHHHHHHHHHhCCC
Q 010837 446 KLNANDRPGAYVALSNTLAAAG---KWDSVTELREKMKLRGV 484 (499)
Q Consensus 446 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~ 484 (499)
-..|.. +..+..+...+.-.| +++-|.+.+.+..+.+.
T Consensus 182 l~~P~n-~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 182 LIQPFN-PLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred HcCCCc-HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 999887 788888888776555 56678888888777554
No 148
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.95 E-value=7.7e-06 Score=58.31 Aligned_cols=52 Identities=21% Similarity=0.242 Sum_probs=22.5
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHH
Q 010837 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELRE 477 (499)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 477 (499)
+..++.+.|++++|.+++++ .+.++.+ ......++.+|.+.|++++|+++++
T Consensus 31 la~~~~~~~~y~~A~~~~~~-~~~~~~~-~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 31 LAQCYFQQGKYEEAIELLQK-LKLDPSN-PDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp HHHHHHHTTHHHHHHHHHHC-HTHHHCH-HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHH-hCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 44444444444444444444 3233322 2333344444455555555554444
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.93 E-value=0.00021 Score=54.85 Aligned_cols=58 Identities=16% Similarity=0.103 Sum_probs=23.6
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCC--CCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 424 LLSSCRLHDDVEMANIAANEIFKLNAND--RPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+..++.+.|+++.|...++.+....|.. ...++..++.++.+.|++++|.+.++++.+
T Consensus 45 l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 104 (119)
T TIGR02795 45 LGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIK 104 (119)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHH
Confidence 3444444444444444444444433321 122333444444444444444444444433
No 150
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.93 E-value=0.0002 Score=55.04 Aligned_cols=101 Identities=17% Similarity=0.141 Sum_probs=82.4
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHH
Q 010837 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPN----SDVWAAL 424 (499)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~----~~~~~~l 424 (499)
.++..+...+...|++++|.+.|..+.+...-.+ ....+..+..++.+.|++++|.+.|+.+.. .|+ ..++..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 4566777788899999999999999985432212 234667789999999999999999998876 333 4678888
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 425 LSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
..++...|+.++|...++++++..|..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 889999999999999999999998876
No 151
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.89 E-value=1.4e-05 Score=44.33 Aligned_cols=31 Identities=39% Similarity=0.651 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhCCChhhHHHHHHHHHHcCC
Q 010837 112 SAYNYMIAGYLKNGQVEESLSLVRKLVSSGE 142 (499)
Q Consensus 112 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 142 (499)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3789999999999999999999999988774
No 152
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.84 E-value=9.8e-05 Score=68.61 Aligned_cols=102 Identities=12% Similarity=0.080 Sum_probs=83.4
Q ss_pred HHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCC
Q 010837 357 LSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDD 433 (499)
Q Consensus 357 l~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 433 (499)
...+...|++++|...|+++.+ ..| +...|..+..+|.+.|++++|+..++++.. +.+...|..+..+|...|+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~---~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~ 85 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID---LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence 4456677999999999999983 355 677888889999999999999999999876 3467788889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 010837 434 VEMANIAANEIFKLNANDRPGAYVALSNT 462 (499)
Q Consensus 434 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 462 (499)
+++|+..|+++++.++.. ......+..+
T Consensus 86 ~~eA~~~~~~al~l~P~~-~~~~~~l~~~ 113 (356)
T PLN03088 86 YQTAKAALEKGASLAPGD-SRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Confidence 999999999999998877 5544444333
No 153
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.79 E-value=0.00021 Score=51.86 Aligned_cols=85 Identities=19% Similarity=0.149 Sum_probs=66.4
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHcCC-CCChhhHHHHhhhcccccc---CCcCcchhHHHHHHHHHHcCCCCchhHH
Q 010837 114 YNYMIAGYLKNGQVEESLSLVRKLVSSGE-RPDGYTFSMILKASTCCRS---NVPLPRNLGRMVHAQILKCDVKADDVLY 189 (499)
Q Consensus 114 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~---~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 189 (499)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+..+... ......-....+++.|+..+++|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556667777999999999999999999 9999999999998753221 1112344566788999999999999999
Q ss_pred HHHHHHHHh
Q 010837 190 TALVDSYVK 198 (499)
Q Consensus 190 ~~l~~~~~~ 198 (499)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999987765
No 154
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.77 E-value=0.00017 Score=62.12 Aligned_cols=97 Identities=19% Similarity=0.195 Sum_probs=65.3
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCC
Q 010837 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGS 401 (499)
Q Consensus 323 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~ 401 (499)
.-+.+.+++++|+..|.+.++.. +-|.+-|..=..+|++.|.++.|++--+..+ .+.| ....|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCc
Confidence 34566677777777777777741 3355556666677777777777777766666 4455 45577777777777777
Q ss_pred HHHHHHHHHhCCC-CCCHHHHHH
Q 010837 402 LEQALKFVLEMPE-KPNSDVWAA 423 (499)
Q Consensus 402 ~~~a~~~~~~~~~-~~~~~~~~~ 423 (499)
+++|++.|++..+ .|+-.+|-.
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHH
Confidence 7777777777776 565555543
No 155
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.77 E-value=3.5e-05 Score=42.73 Aligned_cols=29 Identities=45% Similarity=0.631 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcC
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECC 345 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (499)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776655
No 156
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.76 E-value=0.03 Score=50.91 Aligned_cols=123 Identities=11% Similarity=0.168 Sum_probs=90.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCc
Q 010837 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365 (499)
Q Consensus 286 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 365 (499)
+.+..+.-+...|+...|.++-.+..=|+-..|...+.+++..++|++-.++-.. +-++..|..++.+|.+.|+
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 4455566677889999999998888888989999999999999999887765332 1234678888999999999
Q ss_pred HHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010837 366 VDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428 (499)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~ 428 (499)
..+|..+...+. +..-+..|.++|++.+|.+.-.+.. |...+..+...+
T Consensus 253 ~~eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~~k---d~~~L~~i~~~~ 301 (319)
T PF04840_consen 253 KKEASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFKEK---DIDLLKQILKRC 301 (319)
T ss_pred HHHHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHHcC---CHHHHHHHHHHC
Confidence 999988877633 2445778889999999887765544 344444444433
No 157
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.75 E-value=0.00013 Score=51.92 Aligned_cols=78 Identities=18% Similarity=0.233 Sum_probs=34.2
Q ss_pred CChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHH
Q 010837 329 GNPNQALELFCMMQECCVQ-PNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQAL 406 (499)
Q Consensus 329 g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~ 406 (499)
|+++.|+.+++++.+.... ++...+..+..+|.+.|++++|..+++. . ...+ +......+..++.+.|++++|+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence 4555555555555543211 1222333345555555555555555554 2 1111 1222333345555555555555
Q ss_pred HHHH
Q 010837 407 KFVL 410 (499)
Q Consensus 407 ~~~~ 410 (499)
+.|+
T Consensus 79 ~~l~ 82 (84)
T PF12895_consen 79 KALE 82 (84)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5554
No 158
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.69 E-value=0.00038 Score=50.66 Aligned_cols=89 Identities=19% Similarity=0.119 Sum_probs=37.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhc
Q 010837 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA 399 (499)
Q Consensus 320 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 399 (499)
.+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++..... .+.+...+..+...+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALEL--DPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCcchhHHHHHHHHHHHH
Confidence 34444444555555555555544431 122233444444444445555555555444411 011223344444444444
Q ss_pred CCHHHHHHHHHh
Q 010837 400 GSLEQALKFVLE 411 (499)
Q Consensus 400 ~~~~~a~~~~~~ 411 (499)
|++++|...+.+
T Consensus 82 ~~~~~a~~~~~~ 93 (100)
T cd00189 82 GKYEEALEAYEK 93 (100)
T ss_pred HhHHHHHHHHHH
Confidence 444444444433
No 159
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.68 E-value=0.00015 Score=49.30 Aligned_cols=65 Identities=23% Similarity=0.231 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcC-ChHHHHHHHHHHHhC
Q 010837 417 NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG-KWDSVTELREKMKLR 482 (499)
Q Consensus 417 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 482 (499)
+..+|..+...+...|++++|+..|+++++.+|.. +..|..++.+|.+.| ++++|.+.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~-~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNN-AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTH-HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46778888888999999999999999999998887 888999999999998 799999988887653
No 160
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.67 E-value=0.00067 Score=58.91 Aligned_cols=108 Identities=12% Similarity=0.048 Sum_probs=68.5
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhc---CCHHHHHHHHHHHHhcCCCCCCchhHHH
Q 010837 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLH---DDVEMANIAANEIFKLNANDRPGAYVAL 459 (499)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l 459 (499)
|...|-.|...|...|+.+.|..-|.+... .++...+..+..++..+ .+..++..+|++++..++.. ..+...|
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~-iral~lL 233 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPAN-IRALSLL 233 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCcc-HHHHHHH
Confidence 566666677777777777777766666655 35555565555554332 23456666777777776666 6666667
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCccCcccccc
Q 010837 460 SNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493 (499)
Q Consensus 460 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 493 (499)
...+...|++.+|...++.|.+..-..++..+-|
T Consensus 234 A~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~i 267 (287)
T COG4235 234 AFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLI 267 (287)
T ss_pred HHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 7777777777777777777766665555544443
No 161
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.67 E-value=0.0017 Score=51.08 Aligned_cols=105 Identities=9% Similarity=-0.026 Sum_probs=76.9
Q ss_pred HHHHHhcc-CCChHhHHHHHHHHHhCCCHHHHHHHHHhcC--CCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCC
Q 010837 206 RIVFDMML-EKNVICSTSMISGFMSQGFVEDAEEIFRKTV--EKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFE 282 (499)
Q Consensus 206 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~ 282 (499)
+..+..+. +.+......+...+...|++++|.++|+... +|....|-.-+..+++..+++++|+..|.......+ -
T Consensus 23 l~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-d 101 (157)
T PRK15363 23 LRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-D 101 (157)
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-C
Confidence 44555555 5566677777888889999999999998775 666666666667777777788888888887777664 4
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHhcC
Q 010837 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQ 311 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 311 (499)
++..+-.+..++.+.|+.+.|.+.|+...
T Consensus 102 dp~~~~~ag~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 102 APQAPWAAAECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666667777778888888877777543
No 162
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.64 E-value=0.00015 Score=48.62 Aligned_cols=57 Identities=21% Similarity=0.283 Sum_probs=42.6
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+...+...|++++|++.|+++++..|.. ...+..++.++.+.|++++|...++++.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~-~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDN-PEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTH-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456677788888888888888777765 77777888888888888888888777765
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.63 E-value=0.00083 Score=62.50 Aligned_cols=101 Identities=10% Similarity=0.016 Sum_probs=82.7
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhc
Q 010837 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRA 399 (499)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~ 399 (499)
....+...|++++|++.|++..+.. +.+...|..+..+|...|++++|...++++. .+.| +...|..+..+|...
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al---~l~P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAI---ELDPSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH---HhCcCCHHHHHHHHHHHHHh
Confidence 3556778899999999999999863 4467788888899999999999999999998 3456 677888999999999
Q ss_pred CCHHHHHHHHHhCCC-CCCHHHHHHHH
Q 010837 400 GSLEQALKFVLEMPE-KPNSDVWAALL 425 (499)
Q Consensus 400 ~~~~~a~~~~~~~~~-~~~~~~~~~l~ 425 (499)
|++++|+..|++... .|+.......+
T Consensus 84 g~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 84 EEYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999999887 45544444433
No 164
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.63 E-value=0.048 Score=49.56 Aligned_cols=107 Identities=8% Similarity=0.102 Sum_probs=82.4
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 010837 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 431 (499)
+.+.-+.-|...|+...|.++-.+. . -|+...|...+.+|+..++|++-.++... +-.+.-|...+.+|.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----K-VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 4445566666778888888876555 3 48888899999999999999988876554 33458888999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHH
Q 010837 432 DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476 (499)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 476 (499)
|+..+|..+..+ ..+..-+..|.+.|++.+|.+.-
T Consensus 251 ~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 251 GNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHH
Confidence 999999888776 22377788888999988887653
No 165
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00079 Score=60.56 Aligned_cols=90 Identities=19% Similarity=0.130 Sum_probs=48.3
Q ss_pred HhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChH
Q 010837 397 GRAGSLEQALKFVLEMPE------KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD 470 (499)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 470 (499)
.+.|.+..|.+.|.+... +++...|.....+..+.|+.++|+.-.+++.+.++.- ...|..-+.++...++|+
T Consensus 260 fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy-ikall~ra~c~l~le~~e 338 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY-IKALLRRANCHLALEKWE 338 (486)
T ss_pred hhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH-HHHHHHHHHHHHHHHHHH
Confidence 345555555555555544 2344445555555555566666665555555555554 455555555555555666
Q ss_pred HHHHHHHHHHhCCCccC
Q 010837 471 SVTELREKMKLRGVLKD 487 (499)
Q Consensus 471 ~A~~~~~~~~~~~~~~~ 487 (499)
+|.+-++...+..-.+.
T Consensus 339 ~AV~d~~~a~q~~~s~e 355 (486)
T KOG0550|consen 339 EAVEDYEKAMQLEKDCE 355 (486)
T ss_pred HHHHHHHHHHhhccccc
Confidence 66655555544433333
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.60 E-value=0.0011 Score=54.85 Aligned_cols=93 Identities=15% Similarity=0.096 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 010837 388 HYACMVDLLGRAGSLEQALKFVLEMPE-KPN----SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNT 462 (499)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 462 (499)
.+..+...+...|++++|...|++... .|+ ...+..+...+.+.|++++|...++++++..+.. ...+..++.+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~-~~~~~~lg~~ 115 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ-PSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-HHHHHHHHHH
Confidence 344444445555555555555554442 111 2345555555555555555555555555555444 4445555555
Q ss_pred HHhcCC--------------hHHHHHHHHHHHh
Q 010837 463 LAAAGK--------------WDSVTELREKMKL 481 (499)
Q Consensus 463 ~~~~g~--------------~~~A~~~~~~~~~ 481 (499)
|...|+ +++|.+++++...
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 555444 4556666665544
No 167
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.60 E-value=0.0002 Score=61.67 Aligned_cols=127 Identities=13% Similarity=0.090 Sum_probs=95.5
Q ss_pred HHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHhhcCCH
Q 010837 358 SACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KP-NSDVWAALLSSCRLHDDV 434 (499)
Q Consensus 358 ~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~ 434 (499)
.-+.+.+++++|+..|.+.+ .+.| |...|..=..+|.+.|.++.|++-.+.... .| ...+|..|..+|...|++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence 44667899999999999999 6677 677778888999999999999999988876 33 457999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChH---HHHHHHHHHHhCCCccCc
Q 010837 435 EMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWD---SVTELREKMKLRGVLKDT 488 (499)
Q Consensus 435 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~~ 488 (499)
++|++.|++.++.+|.. ......|-.+-.+.+... .+..-++.....|..|+.
T Consensus 166 ~~A~~aykKaLeldP~N-e~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd~ 221 (304)
T KOG0553|consen 166 EEAIEAYKKALELDPDN-ESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPDS 221 (304)
T ss_pred HHHHHHHHhhhccCCCc-HHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCccc
Confidence 99999999999999988 444444444444444443 334444444444444443
No 168
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.57 E-value=0.00062 Score=60.99 Aligned_cols=132 Identities=12% Similarity=0.183 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-HcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHH
Q 010837 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSA-CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394 (499)
Q Consensus 316 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 394 (499)
.+|-.++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+.+ ..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHH
Confidence 468888999889999999999999998643 2233444433333 334577888999999999654 346677888899
Q ss_pred HHHhcCCHHHHHHHHHhCCCC-CC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 010837 395 LLGRAGSLEQALKFVLEMPEK-PN----SDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (499)
.+.+.++.+.|..+|++.... +. ...|...+.--.+.|+.+.+..+.+++.+.-+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 999999999999999998873 33 348999998889999999999999999887655
No 169
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.54 E-value=0.0026 Score=57.00 Aligned_cols=140 Identities=15% Similarity=0.184 Sum_probs=97.4
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCCCC---hhHHHHHHHH-HHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010837 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKN---VFTWTSMIDG-YGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360 (499)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 360 (499)
.+|..+|....+.+..+.|..+|.++.+.. ...|-..... +...++.+.|.++|+...+. +..+...+...++-+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 367788888888889999999999987643 2333333333 22356777799999998876 566777788888888
Q ss_pred cccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHH
Q 010837 361 GHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDVWAALL 425 (499)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~ 425 (499)
.+.|+.+.|..+|++......-.. ...+|...++.=.+.|+.+.+.++.+++.+ -|+......++
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~ 147 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNSLELFS 147 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-HHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 899999999999999984322122 235888888888889999999999887776 24433333333
No 170
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.54 E-value=0.001 Score=54.88 Aligned_cols=78 Identities=15% Similarity=0.151 Sum_probs=54.2
Q ss_pred CCChhhHHHHHHHHHHcCCCCChhhHHHHhhhcccccc-----------CCcCcchhHHHHHHHHHHcCCCCchhHHHHH
Q 010837 124 NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS-----------NVPLPRNLGRMVHAQILKCDVKADDVLYTAL 192 (499)
Q Consensus 124 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 192 (499)
.|.++=....++.|.+-|+.-|..+|+.||..+=+..- ....+.+.+..++++|...|+.||..++..|
T Consensus 65 RGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~l 144 (228)
T PF06239_consen 65 RGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQML 144 (228)
T ss_pred cChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 35555555666666666666677777776666521110 1223345688899999999999999999999
Q ss_pred HHHHHhCCC
Q 010837 193 VDSYVKGGK 201 (499)
Q Consensus 193 ~~~~~~~g~ 201 (499)
++.+++.+.
T Consensus 145 l~iFG~~s~ 153 (228)
T PF06239_consen 145 LNIFGRKSH 153 (228)
T ss_pred HHHhccccH
Confidence 999987665
No 171
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.52 E-value=0.004 Score=60.66 Aligned_cols=137 Identities=12% Similarity=0.025 Sum_probs=79.4
Q ss_pred CChhHHHHHHHHHHhC-----CChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHHccc--------CcHHHHHHHHHHchH
Q 010837 313 KNVFTWTSMIDGYGKN-----GNPNQALELFCMMQECCVQPNY-VTFLGALSACGHA--------GLVDKGREIFESMER 378 (499)
Q Consensus 313 ~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~--------~~~~~a~~~~~~~~~ 378 (499)
.+...|...+.+.... ++.+.|..+|++..+. .|+. ..+..+..++... .++..+.+.......
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 3566666666654332 2255777777777763 4543 3333332222111 123333443333321
Q ss_pred hcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 379 DYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 379 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
......+...|..+.......|++++|...++++.. .|+...|..+...+...|+.++|.+.++++...+|..
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 111222445666666666666777777777777766 5677777777777777777777777777777777765
No 172
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.51 E-value=0.0037 Score=51.63 Aligned_cols=130 Identities=16% Similarity=0.151 Sum_probs=78.0
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHH
Q 010837 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPN--YVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYA 390 (499)
Q Consensus 314 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~ 390 (499)
....+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+++..+ ..| +...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE---LNPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH---hCcccHHHHH
Confidence 344566667777777888888888877765432222 34566667777777777777777777762 234 445555
Q ss_pred HHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCC
Q 010837 391 CMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGK 468 (499)
Q Consensus 391 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 468 (499)
.+..+|...|+...+..-++... ..+++|.++++++.+.+|.. |..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A~------------------~~~~~A~~~~~~a~~~~p~~----~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEAE------------------ALFDKAAEYWKQAIRLAPNN----YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHHH------------------HHHHHHHHHHHHHHhhCchh----HHHHHHHHHhcCc
Confidence 66666666666554443322211 12566777777777666543 5555555554443
No 173
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.49 E-value=0.0012 Score=54.24 Aligned_cols=92 Identities=12% Similarity=-0.049 Sum_probs=65.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHH
Q 010837 386 MEHYACMVDLLGRAGSLEQALKFVLEMPE-KP----NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460 (499)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 460 (499)
...|..+...+...|++++|+..|++... .| ...++..+...+...|++++|+..++++.+..+.. ...+..++
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~-~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL-PQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-HHHHHHHH
Confidence 44566667777777888888888877753 12 23467778888888888888888888888776665 56666667
Q ss_pred HHHH-------hcCChHHHHHHHHH
Q 010837 461 NTLA-------AAGKWDSVTELREK 478 (499)
Q Consensus 461 ~~~~-------~~g~~~~A~~~~~~ 478 (499)
.++. +.|++++|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 6666 77787766555544
No 174
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.48 E-value=0.023 Score=45.65 Aligned_cols=125 Identities=10% Similarity=0.067 Sum_probs=90.8
Q ss_pred CCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCC-CChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC---CHHH
Q 010837 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK-PKMEHYACMVDLLGRAGSLEQALKFVLEMPE-KP---NSDV 420 (499)
Q Consensus 346 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~---~~~~ 420 (499)
..|+...-..|..+....|+..+|...|++.. . |+- -|....-.+.++....++...|...+++..+ +| +..+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-s-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-S-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-c-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 45666666677788888888888888888877 3 443 3777777788888888888888888887766 22 2334
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHH
Q 010837 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474 (499)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 474 (499)
...+.+.+...|.+..|+..|+.++..-|.+ ..-......+.++|+.++|..
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~--~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPGP--QARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCCH--HHHHHHHHHHHHhcchhHHHH
Confidence 4556677888888888888888888877766 444455666778887766654
No 175
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.47 E-value=0.00091 Score=62.38 Aligned_cols=120 Identities=12% Similarity=0.046 Sum_probs=97.6
Q ss_pred CCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC-C-----ChHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhh
Q 010837 75 GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ-R-----TLSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYT 148 (499)
Q Consensus 75 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~ 148 (499)
+.+.+......++..+....+++.+..++-+... | -..+..++++.|.+.|..+.++++++.=...|+-||..|
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 4456667777788888888888888888877663 2 233556899999999999999999999889999999999
Q ss_pred HHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhC
Q 010837 149 FSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKG 199 (499)
Q Consensus 149 ~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 199 (499)
+|.+|..+ ...+++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~f-----l~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHF-----LKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHH-----hhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999 88889999999988888888777777877777777666
No 176
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.47 E-value=0.0022 Score=52.80 Aligned_cols=61 Identities=13% Similarity=0.023 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC--CHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQP--NYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
.|..+...+...|++++|...|++.......+ ...++..+..++...|+.++|...++...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444555555555555555554331111 11244444445555555555555555544
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.47 E-value=0.034 Score=50.12 Aligned_cols=198 Identities=14% Similarity=0.168 Sum_probs=106.9
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhccC-----CC----hHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHh
Q 010837 189 YTALVDSYVKGGKTSYARIVFDMMLE-----KN----VICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYS 259 (499)
Q Consensus 189 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~ 259 (499)
|......|-..|++++|.+.|.+... .+ ...|......|.+. ++++|.+.+++. +..+.
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A-----------~~~y~ 105 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA-----------IEIYR 105 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH-----------HHHHH
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH-----------HHHHH
Confidence 44456677778888888877766522 01 11233333333332 555555554432 12222
Q ss_pred cChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhc-CChHHHHHHHHhcCC-----C----ChhHHHHHHHHHHhCC
Q 010837 260 ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKC-GKIDDARRVFDHMQQ-----K----NVFTWTSMIDGYGKNG 329 (499)
Q Consensus 260 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~g 329 (499)
.. |.++.+-. .+..+...|... |++++|.+.|++..+ . -...+..+...+.+.|
T Consensus 106 ~~-G~~~~aA~---------------~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~ 169 (282)
T PF14938_consen 106 EA-GRFSQAAK---------------CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLG 169 (282)
T ss_dssp HC-T-HHHHHH---------------HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT
T ss_pred hc-CcHHHHHH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhC
Confidence 22 33323222 333455556666 778888877777653 1 1234556777788888
Q ss_pred ChhHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHHcccCcHHHHHHHHHHchHh-cCCCCC--hhHHHHHHHHHHh--
Q 010837 330 NPNQALELFCMMQECCVQ-----PNYV-TFLGALSACGHAGLVDKGREIFESMERD-YSMKPK--MEHYACMVDLLGR-- 398 (499)
Q Consensus 330 ~~~~a~~~~~~m~~~~~~-----p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~p~--~~~~~~l~~~~~~-- 398 (499)
++++|.++|++....... .+.. .|...+-++...|+...|.+.+++.... .++..+ ......|+.++-.
T Consensus 170 ~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D 249 (282)
T PF14938_consen 170 RYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGD 249 (282)
T ss_dssp -HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCC
Confidence 999999999887664322 1221 2333344566678888888888887622 122222 3355666776643
Q ss_pred cCCHHHHHHHHHhCCC
Q 010837 399 AGSLEQALKFVLEMPE 414 (499)
Q Consensus 399 ~~~~~~a~~~~~~~~~ 414 (499)
...++.++.-|+.+..
T Consensus 250 ~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 250 VEAFTEAVAEYDSISR 265 (282)
T ss_dssp CCCHHHHCHHHTTSS-
T ss_pred HHHHHHHHHHHcccCc
Confidence 3567777777777764
No 178
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.46 E-value=0.0013 Score=59.07 Aligned_cols=130 Identities=12% Similarity=0.053 Sum_probs=88.2
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHH---chHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--------CCCHH
Q 010837 352 TFLGALSACGHAGLVDKGREIFES---MERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--------KPNSD 419 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~---~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~ 419 (499)
.|..|...|.-.|+++.|+...+. +.+++|-.. ....+..|..++.-.|+++.|.+.|+.... .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455666666677888888765543 222344333 345677788888888888888888776433 13345
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhc----C-CCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFKL----N-ANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+..+|..+|.-..++++|+..+++-+.. + ..-....++.|..++...|..+.|+.+.+.-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 6667788888888888888887765431 1 111256888999999999998888877765543
No 179
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.45 E-value=0.0046 Score=60.25 Aligned_cols=137 Identities=12% Similarity=-0.014 Sum_probs=100.2
Q ss_pred CCCCCHHHHHHHHHHHcc-----cCcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHHHHhc--------CCHHHHHHHHH
Q 010837 345 CVQPNYVTFLGALSACGH-----AGLVDKGREIFESMERDYSMKPK-MEHYACMVDLLGRA--------GSLEQALKFVL 410 (499)
Q Consensus 345 ~~~p~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------~~~~~a~~~~~ 410 (499)
+.+.|...|..++.+... .++.+.|..+|++.. ...|+ ...|..+..++... +++..+.+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai---~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEIL---KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 356778888888887543 234779999999998 45784 44555554444322 22345555555
Q ss_pred hCCC----CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 010837 411 EMPE----KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLK 486 (499)
Q Consensus 411 ~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 486 (499)
+... ..+...|..+.-.+...|++++|...++++++.++. ...|..++.+|...|+.++|.+.+++....+...
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~ 486 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS--WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGE 486 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 5332 345577887777777789999999999999999973 6899999999999999999999999987755443
No 180
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.45 E-value=0.00099 Score=62.15 Aligned_cols=120 Identities=13% Similarity=0.090 Sum_probs=102.0
Q ss_pred CCCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHh--CCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC----CChHH
Q 010837 40 SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKT--GVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ----RTLSA 113 (499)
Q Consensus 40 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~ 113 (499)
..+-++-.+..++..+....+++.+..++...... ....-..+..++++.|.+.|..++++.+++.=.. ||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34556677888899999999999999998888765 3334455667999999999999999999987554 89999
Q ss_pred HHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhcccc
Q 010837 114 YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCC 159 (499)
Q Consensus 114 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 159 (499)
+|.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999999999988888888998888888544
No 181
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.43 E-value=0.0024 Score=46.53 Aligned_cols=79 Identities=14% Similarity=0.188 Sum_probs=60.8
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCC-CCCHHHHHHHHHHHcccC--------cHHHHHHHHHHchHhcCCCCChhHH
Q 010837 319 TSMIDGYGKNGNPNQALELFCMMQECCV-QPNYVTFLGALSACGHAG--------LVDKGREIFESMERDYSMKPKMEHY 389 (499)
Q Consensus 319 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~p~~~~~ 389 (499)
...|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. ++-+...+|+.|. ..+++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHHHH
Confidence 3455566667888899999999999888 889999998888766542 3445677888888 55888888888
Q ss_pred HHHHHHHHh
Q 010837 390 ACMVDLLGR 398 (499)
Q Consensus 390 ~~l~~~~~~ 398 (499)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888887654
No 182
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.41 E-value=0.0031 Score=52.17 Aligned_cols=97 Identities=18% Similarity=0.309 Sum_probs=76.9
Q ss_pred HHHHHhc--CCCChhHHHHHHHHHHh-----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHccc-------------
Q 010837 304 RRVFDHM--QQKNVFTWTSMIDGYGK-----NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA------------- 363 (499)
Q Consensus 304 ~~~~~~~--~~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~------------- 363 (499)
...|+.. ...+-.+|..+++.|.+ .|..+=....++.|.+-|+.-|..+|+.|++.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4556655 45677888888888875 467777888899999999999999999999987653
Q ss_pred ---CcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCC
Q 010837 364 ---GLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGS 401 (499)
Q Consensus 364 ---~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~ 401 (499)
.+-+-|+++++.|. .+|+-||..++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME-~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQME-NNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHH-HcCCCCcHHHHHHHHHHhccccH
Confidence 23467888999998 77999999999999998876654
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.40 E-value=0.00024 Score=48.19 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=40.9
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 429 RLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
...|++++|++.|+++.+..|.. ..++..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~-~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDN-PEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTS-HHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45678888888888888888776 7777788888888888888888887776543
No 184
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.39 E-value=0.0064 Score=54.74 Aligned_cols=186 Identities=16% Similarity=0.210 Sum_probs=108.9
Q ss_pred HHHHHhcCChHHHHHHHHhcCC-------C--ChhHHHHHHHHHHhCCChhHHHHHHHHHHH----cCCCCCH--HHHHH
Q 010837 291 VDMYAKCGKIDDARRVFDHMQQ-------K--NVFTWTSMIDGYGKNGNPNQALELFCMMQE----CCVQPNY--VTFLG 355 (499)
Q Consensus 291 ~~~~~~~g~~~~a~~~~~~~~~-------~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~~p~~--~~~~~ 355 (499)
...|...|++++|.+.|.+..+ + -...|......|.+. ++++|.+.+++..+ .| .|+. ..+..
T Consensus 42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~ 119 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQAAKCLKE 119 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHH
Confidence 3446666677766666665432 1 112344444444443 77777777776543 22 2322 35667
Q ss_pred HHHHHccc-CcHHHHHHHHHHchHhcCC--CC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--------CCHH-HH
Q 010837 356 ALSACGHA-GLVDKGREIFESMERDYSM--KP--KMEHYACMVDLLGRAGSLEQALKFVLEMPEK--------PNSD-VW 421 (499)
Q Consensus 356 ll~~~~~~-~~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~-~~ 421 (499)
+...|... |++++|.+.|++...-+.. .+ -..++..+...+.+.|++++|.++|+++... .+.. .+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 77788888 8999999999887743221 12 1345677788899999999999999876431 1221 33
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCc-hhH---HHHHHHHhcCChHHHHHHHHHH
Q 010837 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPG-AYV---ALSNTLAAAGKWDSVTELREKM 479 (499)
Q Consensus 422 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~---~l~~~~~~~g~~~~A~~~~~~~ 479 (499)
...+-++...||...|.+.+++.....|..... -+. .|+.++ +.|+.+.....+.+.
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-~~~D~e~f~~av~~~ 260 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-EEGDVEAFTEAVAEY 260 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-HTT-CCCHHHHCHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-HhCCHHHHHHHHHHH
Confidence 344446677899999999999998877665222 122 233332 556666666665554
No 185
>PRK15331 chaperone protein SicA; Provisional
Probab=97.38 E-value=0.0032 Score=49.82 Aligned_cols=87 Identities=18% Similarity=0.062 Sum_probs=56.6
Q ss_pred HHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHH
Q 010837 394 DLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDS 471 (499)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 471 (499)
.-+...|++++|..+|+-+.- .-+..-|..|..++-..+++++|+..+..+...++.. +..+...+.+|...|+.+.
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~d-p~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKND-YRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCC-CCccchHHHHHHHhCCHHH
Confidence 334566777777777665433 3455556666666666677777777777766666544 6666777777777777777
Q ss_pred HHHHHHHHHh
Q 010837 472 VTELREKMKL 481 (499)
Q Consensus 472 A~~~~~~~~~ 481 (499)
|...|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7777766655
No 186
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.37 E-value=0.00047 Score=46.86 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcC-CHHHHHHHHHHHHhcCC
Q 010837 386 MEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHD-DVEMANIAANEIFKLNA 449 (499)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~ 449 (499)
..+|..+...+...|++++|+..|++..+ +.+...|..+..++...| ++++|++.+++.++.+|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 45566677777777777777777777665 334566777777777777 57777777777776654
No 187
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.36 E-value=0.00066 Score=45.45 Aligned_cols=59 Identities=15% Similarity=0.226 Sum_probs=40.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 010837 392 MVDLLGRAGSLEQALKFVLEMPE-KP-NSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (499)
+...+...|++++|++.|+++.. .| +...+..+..++...|++++|...++++++..|.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 34556677777777777777766 23 4556777777777777777777777777776664
No 188
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.35 E-value=0.0081 Score=45.54 Aligned_cols=93 Identities=14% Similarity=0.150 Sum_probs=58.5
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHH
Q 010837 321 MIDGYGKNGNPNQALELFCMMQECCVQPN--YVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLG 397 (499)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~ 397 (499)
+..++-..|+.++|+.+|++....|.... ...+..+..++...|++++|..+++.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556667888888888888877765544 23455666777778888888888877774422111 2222333445666
Q ss_pred hcCCHHHHHHHHHhCC
Q 010837 398 RAGSLEQALKFVLEMP 413 (499)
Q Consensus 398 ~~~~~~~a~~~~~~~~ 413 (499)
..|+.++|++.+-...
T Consensus 87 ~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 87 NLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCHHHHHHHHHHHH
Confidence 7788887777765544
No 189
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.32 E-value=0.0011 Score=45.65 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=47.7
Q ss_pred HHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 010837 426 SSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGV 484 (499)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 484 (499)
..|.+.+++++|.++++++++.+|.. +..+...+.++.+.|++++|.+.+++..+.+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~-~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDD-PELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCccc-chhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 46778888888888888888888886 88888888888888888888888888876543
No 190
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.31 E-value=0.039 Score=48.24 Aligned_cols=54 Identities=9% Similarity=0.101 Sum_probs=41.4
Q ss_pred HHHHHHHhCCChhHHHHHHHhccCC--C-hH---hHHHHHHHHHhCCCHHHHHHHHHhcC
Q 010837 191 ALVDSYVKGGKTSYARIVFDMMLEK--N-VI---CSTSMISGFMSQGFVEDAEEIFRKTV 244 (499)
Q Consensus 191 ~l~~~~~~~g~~~~A~~~~~~~~~~--~-~~---~~~~l~~~~~~~g~~~~a~~~~~~~~ 244 (499)
.....+...|++++|.+.|+.+... + .. ..-.++.++.+.+++++|...+++..
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi 96 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFI 96 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 3445567789999999999999663 2 22 23456778899999999999999887
No 191
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.30 E-value=0.024 Score=48.22 Aligned_cols=165 Identities=8% Similarity=-0.014 Sum_probs=116.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhcCC----------CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 010837 287 GSALVDMYAKCGKIDDARRVFDHMQQ----------KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGA 356 (499)
Q Consensus 287 ~~~l~~~~~~~g~~~~a~~~~~~~~~----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 356 (499)
++.|.+.+.-..-+++-...++.-.. .-....+.++..+.-.|.+.-.+..+.+.++...+-++...+.+
T Consensus 139 qesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~L 218 (366)
T KOG2796|consen 139 QESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGL 218 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHH
Confidence 44555555544444444444443322 22335566777777788999999999999998767788888899
Q ss_pred HHHHcccCcHHHHHHHHHHchHhcC----CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhh
Q 010837 357 LSACGHAGLVDKGREIFESMERDYS----MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRL 430 (499)
Q Consensus 357 l~~~~~~~~~~~a~~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~ 430 (499)
...-.+.|+.+.|..+|++..+..+ ++-+..+.......|.-.+++..|...+.++.. +.++...|.-.-+..-
T Consensus 219 gr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllY 298 (366)
T KOG2796|consen 219 GRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLY 298 (366)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHH
Confidence 9999999999999999997774432 222222333333456677899999999998887 3455555555555556
Q ss_pred cCCHHHHHHHHHHHHhcCCCC
Q 010837 431 HDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.|+...|++.++.|.+..|.+
T Consensus 299 lg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 299 LGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHHHhccCCcc
Confidence 789999999999999988887
No 192
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.28 E-value=0.15 Score=47.17 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=49.7
Q ss_pred CHHHHHHHHHH--HhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 417 NSDVWAALLSS--CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 417 ~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+...-|.|.+| +...|++.++.-.-..+.+..| ++.+|..++-++....++++|..++..+.-
T Consensus 459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP--S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~ 523 (549)
T PF07079_consen 459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP--SPQAYRLLGLCLMENKRYQEAWEYLQKLPP 523 (549)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHHHHHhCCC
Confidence 34456666665 5678999998877666666666 469999999999999999999999987643
No 193
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.28 E-value=0.029 Score=48.98 Aligned_cols=58 Identities=3% Similarity=-0.020 Sum_probs=46.5
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCCC--CCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 423 ALLSSCRLHDDVEMANIAANEIFKLNAND--RPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
.+.+-|.+.|.+..|..-++.+++.-|.. .......++.+|.+.|..++|.++...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 34556888999999999999999876654 24567788899999999999998877654
No 194
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.23 E-value=0.28 Score=49.35 Aligned_cols=408 Identities=13% Similarity=0.120 Sum_probs=215.3
Q ss_pred hCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHH--HHcCCChhHHHHHhccCCC---CChHHHHHHHHHHHhCCChhhH
Q 010837 56 INSDTPFYGLKIHAHITKTGVKPNTNISIKLLIL--HLKCGALKYAGQMFDELPQ---RTLSAYNYMIAGYLKNGQVEES 130 (499)
Q Consensus 56 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a 130 (499)
...+++..|..-..++.+.. |+. .|...+.+ +.+.|+.++|..+++.... .|..+...+-.+|.+.|+.++|
T Consensus 20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 45678889998888888763 443 23333444 3688999999999987653 4777888999999999999999
Q ss_pred HHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCC---------
Q 010837 131 LSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGK--------- 201 (499)
Q Consensus 131 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------- 201 (499)
..+|++..+. .|+..-...+..++ .+.+.+..-.++--++.+ .++-+...+=.++..+.....
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmay-----vR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAY-----VREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccch
Confidence 9999999875 67766666667777 555555554444444433 234455555556655544321
Q ss_pred -hhHHHHHHHhccCCC--hHh---HHHHHHHHHhCCCHHHHHHHHHhcC-----CCChhhHHHHHHHHhcChhhHHHHHH
Q 010837 202 -TSYARIVFDMMLEKN--VIC---STSMISGFMSQGFVEDAEEIFRKTV-----EKDIVVYNAMIEGYSISIETARKALE 270 (499)
Q Consensus 202 -~~~A~~~~~~~~~~~--~~~---~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~~a~~ 270 (499)
..-|.+.++.+.+.+ ..+ ...-...+-..|++++|++++..-. .-+...-+.-+.. .+..+.+.+..+
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dl-lk~l~~w~~l~~ 247 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDL-LKLLNRWQELFE 247 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHH-HHHhcChHHHHH
Confidence 223555566665443 111 1112334556788999999883322 1111111122222 223366667777
Q ss_pred HHHHHHHcccCCCchhHHHHHHHH----------------HhcCChHHHHHHHHhcCCC-ChhHHHHHHHHHH---hCCC
Q 010837 271 VHCQLIKNVFFEDVKLGSALVDMY----------------AKCGKIDDARRVFDHMQQK-NVFTWTSMIDGYG---KNGN 330 (499)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~~----------------~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~---~~g~ 330 (499)
+-.++...|... |...++.+ ...+.++...+..++.... .-..|-+-+.+.. .-|+
T Consensus 248 l~~~Ll~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd 323 (932)
T KOG2053|consen 248 LSSRLLEKGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGD 323 (932)
T ss_pred HHHHHHHhCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCC
Confidence 777777766432 32222221 1112233333332222211 1122333333333 3467
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChh-------HHHHHHHHHHhcCC--
Q 010837 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME-------HYACMVDLLGRAGS-- 401 (499)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-------~~~~l~~~~~~~~~-- 401 (499)
.+++...|-+- -|..|-. ..=+..|...=..+.-..++.... +..++.. -+...+..-.-.|.
T Consensus 324 ~ee~~~~y~~k--fg~kpcc---~~Dl~~yl~~l~~~q~~~l~~~l~---~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~ 395 (932)
T KOG2053|consen 324 SEEMLSYYFKK--FGDKPCC---AIDLNHYLGHLNIDQLKSLMSKLV---LADDDSSGDEKVLQQHLCVLLLLRLLGLYE 395 (932)
T ss_pred hHHHHHHHHHH--hCCCcHh---HhhHHHhhccCCHHHHHHHHHHhh---ccCCcchhhHHHHHHHHHHHHHHHHhhccc
Confidence 77765544332 1222211 111111111112222222222222 1111110 01111111111121
Q ss_pred ---HHHHHHHH-------HhCCC--C---CC---------HHHHHHHHHHHhhcCCHH---HHHHHHHHHHhcCCCCCCc
Q 010837 402 ---LEQALKFV-------LEMPE--K---PN---------SDVWAALLSSCRLHDDVE---MANIAANEIFKLNANDRPG 454 (499)
Q Consensus 402 ---~~~a~~~~-------~~~~~--~---~~---------~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~ 454 (499)
-+....++ +.-.+ + |+ ..+.+.|+..+.+.+|.. +|+-+++......+.+ ..
T Consensus 396 ~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hn-f~ 474 (932)
T KOG2053|consen 396 KLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHN-FQ 474 (932)
T ss_pred cCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCcc-HH
Confidence 11111111 11111 0 11 124567788888888755 5666677766676666 67
Q ss_pred hhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCc
Q 010837 455 AYVALSNTLAAAGKWDSVTELREKMKLRGVLKDT 488 (499)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 488 (499)
+-..++++|.-.|-+..|.++++.+--.++..|+
T Consensus 475 ~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 475 TKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 7778999999999999999999988877777765
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.21 E-value=0.0035 Score=55.20 Aligned_cols=99 Identities=12% Similarity=0.124 Sum_probs=48.5
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC----CHHHHHHHHH
Q 010837 353 FLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KP----NSDVWAALLS 426 (499)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~----~~~~~~~l~~ 426 (499)
|...+....+.|++++|...|+.+.+.+.-.+ ....+..+...|...|++++|...|+.+.. -| ....+..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 44444333445566666666666553321111 023444555555556666666665555543 12 1233444444
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 427 SCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.+...|+.++|..+++++++..|..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 4555556666666665555555544
No 196
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.16 E-value=0.056 Score=49.65 Aligned_cols=161 Identities=19% Similarity=0.110 Sum_probs=103.5
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCCC-------ChhHHHHHHHHHHh---CCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 010837 286 LGSALVDMYAKCGKIDDARRVFDHMQQK-------NVFTWTSMIDGYGK---NGNPNQALELFCMMQECCVQPNYVTFLG 355 (499)
Q Consensus 286 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~~~~~ 355 (499)
+...++-+|....+++...++.+.+... ....-....-++.+ .|+.++|++++..+......++..+|..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 3445566788899999999999988763 22333345556667 8999999999999766667888888888
Q ss_pred HHHHHc---------ccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCH----HHHHHHH---HhCC-C----
Q 010837 356 ALSACG---------HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL----EQALKFV---LEMP-E---- 414 (499)
Q Consensus 356 ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~----~~a~~~~---~~~~-~---- 414 (499)
+...|- .....++|...|.+.- .+.|+...--.++-.+...|.- .+..++- .... .
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~ 299 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSL 299 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccc
Confidence 776653 2234778888887665 4455433222222222233321 1222222 1111 1
Q ss_pred --CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCC
Q 010837 415 --KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449 (499)
Q Consensus 415 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (499)
..+--.+..++.++.-.||.++|.+.+++|.+..+
T Consensus 300 ~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~ 336 (374)
T PF13281_consen 300 EKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKP 336 (374)
T ss_pred cccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCC
Confidence 24555677788888889999999999999988753
No 197
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.15 E-value=0.0012 Score=44.72 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=23.7
Q ss_pred cCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 363 AGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 363 ~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
.|++++|.++|+.+... .| +..++..++.+|.+.|++++|.++++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQR---NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHH---TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555555555555422 23 444444455555555555555555555544
No 198
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.06 E-value=0.25 Score=45.68 Aligned_cols=131 Identities=12% Similarity=0.116 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHH-HHHHH
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECC-VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHY-ACMVD 394 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~ 394 (499)
.|...+..-.+..-.+.|..+|.++.+.| +.++...+++++.-++ .|+...|.++|+.-...+ ||...| +..+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl~ 474 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYLL 474 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHHH
Confidence 56666777777777888888999888888 6677888888887665 478888888888777443 333333 45556
Q ss_pred HHHhcCCHHHHHHHHHhCCCC----CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 395 LLGRAGSLEQALKFVLEMPEK----PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.+.+.++-+.|..+|+....+ .-...|..+|.--..-|+...+..+=+++.+.-|+-
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQe 535 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQE 535 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcH
Confidence 667888888888888866552 224678888887778888877777777776655543
No 199
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.05 E-value=0.0094 Score=52.51 Aligned_cols=85 Identities=9% Similarity=0.014 Sum_probs=43.5
Q ss_pred HhcCCHHHHHHHHHhCCC-CCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC--CCchhHHHHHHHHhcCCh
Q 010837 397 GRAGSLEQALKFVLEMPE-KPNS----DVWAALLSSCRLHDDVEMANIAANEIFKLNAND--RPGAYVALSNTLAAAGKW 469 (499)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~ 469 (499)
.+.|++++|+..|+.+.. .|+. ..+..+..+|...|++++|...|+.+.+..|.. .+..+..++.++...|++
T Consensus 154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCH
Confidence 444555555555555554 2322 344455555555555555555555555544432 123344445555555555
Q ss_pred HHHHHHHHHHHh
Q 010837 470 DSVTELREKMKL 481 (499)
Q Consensus 470 ~~A~~~~~~~~~ 481 (499)
++|.++++.+.+
T Consensus 234 ~~A~~~~~~vi~ 245 (263)
T PRK10803 234 AKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHHHHHHH
Confidence 555555555544
No 200
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.05 E-value=0.29 Score=47.35 Aligned_cols=81 Identities=14% Similarity=0.075 Sum_probs=51.9
Q ss_pred HHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHH
Q 010837 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIF 373 (499)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 373 (499)
+...|-.+.+.++-+++...+..+...+..-+.+...+..|-++|.+|-+. ..+++.+...+++.+|..+-
T Consensus 726 ~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalA 796 (1081)
T KOG1538|consen 726 CGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALA 796 (1081)
T ss_pred hhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhh
Confidence 444444455555555555555566666666666677778888888877542 34667778888888888877
Q ss_pred HHchHhcCCCCCh
Q 010837 374 ESMERDYSMKPKM 386 (499)
Q Consensus 374 ~~~~~~~~~~p~~ 386 (499)
++.- .+.|++
T Consensus 797 e~hP---e~~~dV 806 (1081)
T KOG1538|consen 797 EKHP---EFKDDV 806 (1081)
T ss_pred hhCc---cccccc
Confidence 6655 444543
No 201
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.95 E-value=0.035 Score=48.56 Aligned_cols=103 Identities=13% Similarity=-0.036 Sum_probs=77.8
Q ss_pred CCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhc---CCHHHHHHHHHhCCC--CCCHHHH
Q 010837 347 QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRA---GSLEQALKFVLEMPE--KPNSDVW 421 (499)
Q Consensus 347 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~--~~~~~~~ 421 (499)
+-|...|..|..+|...|+.+.|..-|....+-.| ++...+..+..++... ....++.++|+++.. +.|+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 55778888888889999999999888888873322 2566667777666543 245678888888876 3456667
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 422 AALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 422 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
..|...+...|++.+|...|+.|.+..+..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 777778888999999999999998887766
No 202
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.94 E-value=0.01 Score=44.94 Aligned_cols=90 Identities=13% Similarity=0.062 Sum_probs=54.7
Q ss_pred HHHHHcccCcHHHHHHHHHHchHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CC---HH-HHHHHHHHH
Q 010837 356 ALSACGHAGLVDKGREIFESMERDYSMKPK--MEHYACMVDLLGRAGSLEQALKFVLEMPEK-PN---SD-VWAALLSSC 428 (499)
Q Consensus 356 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~---~~-~~~~l~~~~ 428 (499)
+..++-..|+.++|+.+|++.. ..|+... ...+-.+...+...|++++|..+|++.... |+ .. ....+.-++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al-~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRAL-AAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHH-HcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3445666777788888887777 3355443 334555666677777777777777766652 43 21 222233355
Q ss_pred hhcCCHHHHHHHHHHHHh
Q 010837 429 RLHDDVEMANIAANEIFK 446 (499)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~ 446 (499)
...|+.++|++.+-....
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 666777777777655443
No 203
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.92 E-value=0.3 Score=44.32 Aligned_cols=209 Identities=14% Similarity=0.144 Sum_probs=96.9
Q ss_pred HhCCChhHHHHHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcC-----CCChh--hHHHHHHHHhc--Chhh
Q 010837 197 VKGGKTSYARIVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTV-----EKDIV--VYNAMIEGYSI--SIET 264 (499)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-----~~~~~--~~~~ll~~~~~--~~~~ 264 (499)
-+.|+.+.|..+-+..-.. -...+...+...+..|+++.|+++++.-. +++.. .-..++.+-.. ...+
T Consensus 165 qr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad 244 (531)
T COG3898 165 QRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD 244 (531)
T ss_pred HhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence 4556666666666555332 23456666777777777777777775443 23321 12222222111 1112
Q ss_pred HHHHHHHHHHHHHcccCCCchh-HHHHHHHHHhcCChHHHHHHHHhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHH
Q 010837 265 ARKALEVHCQLIKNVFFEDVKL-GSALVDMYAKCGKIDDARRVFDHMQQ--KNVFTWTSMIDGYGKNGNPNQALELFCMM 341 (499)
Q Consensus 265 ~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 341 (499)
...|...-.+. ....|+..- -..-..++.+.|++.++-.+++.+-+ |.+..+. +..+.+.|+. +..-+++.
T Consensus 245 p~~Ar~~A~~a--~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gdt--a~dRlkRa 318 (531)
T COG3898 245 PASARDDALEA--NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGDT--ALDRLKRA 318 (531)
T ss_pred hHHHHHHHHHH--hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCCc--HHHHHHHH
Confidence 22222222222 223344321 12234456666666666666666654 3333322 2223344432 22222222
Q ss_pred HHc-CCCC-CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHH-hcCCHHHHHHHHHhCCC
Q 010837 342 QEC-CVQP-NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG-RAGSLEQALKFVLEMPE 414 (499)
Q Consensus 342 ~~~-~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~ 414 (499)
... .++| +..+...+..+-...|++..|..--+... ...|....|..|.+.-. ..|+-.++..++.+...
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 110 1233 23344445555556666666655544444 34565556655555433 33666666666665554
No 204
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.89 E-value=0.52 Score=46.58 Aligned_cols=151 Identities=11% Similarity=0.031 Sum_probs=78.4
Q ss_pred CCCChhhHHHHHHHHH--------HhCCCCChHHHH-----HHHHHHHcCCChhHHHHHhccCCCCC---hHHHHHHHHH
Q 010837 57 NSDTPFYGLKIHAHIT--------KTGVKPNTNISI-----KLLILHLKCGALKYAGQMFDELPQRT---LSAYNYMIAG 120 (499)
Q Consensus 57 ~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~ 120 (499)
+..++++-.++.+.+. ..|++.+..-|. .++.-+...+.+..|+++-+.+..|. ...|......
T Consensus 401 ~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~ 480 (829)
T KOG2280|consen 401 RTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARR 480 (829)
T ss_pred ccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHH
Confidence 4445555554444332 346666665554 35677777888888888887777654 4556666666
Q ss_pred HHhCCCh--hhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCC----CchhHHHHHHH
Q 010837 121 YLKNGQV--EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVK----ADDVLYTALVD 194 (499)
Q Consensus 121 ~~~~g~~--~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~ 194 (499)
+.+..+. +++++..++=...-.. ...+|..+-+.. ...|..+.|..+.+.=...+.. .+..-+...+.
T Consensus 481 kI~~~d~~d~~vld~I~~kls~~~~-~~iSy~~iA~~A-----y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~ 554 (829)
T KOG2280|consen 481 KIKQSDKMDEEVLDKIDEKLSAKLT-PGISYAAIARRA-----YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALK 554 (829)
T ss_pred HHhccCccchHHHHHHHHHhcccCC-CceeHHHHHHHH-----HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHH
Confidence 6655332 2333333332222222 333454444443 5666677776665432111100 11122334444
Q ss_pred HHHhCCChhHHHHHHHhcc
Q 010837 195 SYVKGGKTSYARIVFDMML 213 (499)
Q Consensus 195 ~~~~~g~~~~A~~~~~~~~ 213 (499)
-+...||.+-...++-.+.
T Consensus 555 kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 555 KAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred HHHhcCCchhHHHHHHHHH
Confidence 5556666666666555543
No 205
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.86 E-value=0.051 Score=46.16 Aligned_cols=167 Identities=11% Similarity=0.052 Sum_probs=89.6
Q ss_pred HHHHHhcCChHHHHHHHHhcCC--C----ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcc--
Q 010837 291 VDMYAKCGKIDDARRVFDHMQQ--K----NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGH-- 362 (499)
Q Consensus 291 ~~~~~~~g~~~~a~~~~~~~~~--~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-- 362 (499)
...+...|++++|...|+.+.. | -....-.++.++.+.|+++.|...++++.+.-..-....+...+.+.+.
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 3445667777777777777764 2 1234455667777778888888887777664211111122222222211
Q ss_pred -----------cCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 010837 363 -----------AGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH 431 (499)
Q Consensus 363 -----------~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~ 431 (499)
.+...+|... +..++.-|-......+|...+..+...--. --..+..-|.+.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~----------------~~~li~~yP~S~y~~~A~~~l~~l~~~la~-~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEE----------------FEELIKRYPNSEYAEEAKKRLAELRNRLAE-HELYIARFYYKR 154 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHH----------------HHHHHHH-TTSTTHHHHHHHHHHHHHHHHH-HHHHHHHHHHCT
T ss_pred hCccchhcccChHHHHHHHHH----------------HHHHHHHCcCchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHc
Confidence 1111222222 334444444444455555444444321111 112245678899
Q ss_pred CCHHHHHHHHHHHHhcCCCCC--CchhHHHHHHHHhcCChHHHHH
Q 010837 432 DDVEMANIAANEIFKLNANDR--PGAYVALSNTLAAAGKWDSVTE 474 (499)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~ 474 (499)
|.+..|..-++.+++.-|... ......++.+|.+.|..+.|..
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 999999999999998877651 2356678888999998875543
No 206
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.81 E-value=0.02 Score=43.93 Aligned_cols=52 Identities=12% Similarity=0.231 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHH
Q 010837 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLG 397 (499)
Q Consensus 346 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 397 (499)
..|+..+..+++.+|+..|++..|.++.+.+.+.++++.+..+|..|++-..
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 5678888889999999999999999999999888887778888888877543
No 207
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.81 E-value=0.2 Score=40.48 Aligned_cols=94 Identities=13% Similarity=0.069 Sum_probs=43.6
Q ss_pred CCchhHHHHHHHHHhcCChHHHHHHHHhcCC----CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcC---CCCCHHHHH
Q 010837 282 EDVKLGSALVDMYAKCGKIDDARRVFDHMQQ----KNVFTWTSMIDGYGKNGNPNQALELFCMMQECC---VQPNYVTFL 354 (499)
Q Consensus 282 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~ 354 (499)
|++..-..|..+....|+..+|...|++... .|....-.+.++....+++..|...++++.+.+ -+|| +..
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L 164 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL 164 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence 3444344445555555555555555554432 244444444445555555555555555544432 1111 222
Q ss_pred HHHHHHcccCcHHHHHHHHHHch
Q 010837 355 GALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
.+..++...|+.+.|+.-|+...
T Consensus 165 l~aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 165 LFARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred HHHHHHHhcCCchhHHHHHHHHH
Confidence 33444444555555555555544
No 208
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.75 E-value=0.65 Score=45.56 Aligned_cols=62 Identities=19% Similarity=0.121 Sum_probs=37.1
Q ss_pred CCChHHHHHHHHHHHcCCChhHHHHHhccCCC-CChHHH------------HHHHHHHHhCCChhhHHHHHHHHHHc
Q 010837 77 KPNTNISIKLLILHLKCGALKYAGQMFDELPQ-RTLSAY------------NYMIAGYLKNGQVEESLSLVRKLVSS 140 (499)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~------------~~li~~~~~~g~~~~a~~~~~~m~~~ 140 (499)
.|.+..|..+...-...-.++.|+..|-+... +.+..- .+=+.+| -|++++|.++|-+|-++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~--~g~feeaek~yld~drr 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAF--YGEFEEAEKLYLDADRR 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhh--hcchhHhhhhhhccchh
Confidence 57778887777777777777777777765542 222211 1112222 46777777777666544
No 209
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.72 E-value=0.0066 Score=48.55 Aligned_cols=69 Identities=22% Similarity=0.203 Sum_probs=45.5
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHH-----hCCCccCcc
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK-----LRGVLKDTG 489 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ 489 (499)
+...++..+...|++++|.++++.++..+|-. ...|..++.+|.+.|+..+|.++|+++. +.|+.|++.
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~-E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYD-EEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 44556666777788888888888888887776 7778888888888888888887777653 346666654
No 210
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.72 E-value=0.0024 Score=44.54 Aligned_cols=60 Identities=12% Similarity=0.129 Sum_probs=27.7
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhc----CCCC--CCchhHHHHHHHHhcCChHHHHHHHHHH
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFKL----NAND--RPGAYVALSNTLAAAGKWDSVTELREKM 479 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 479 (499)
+++.+...|...|++++|+..++++++. +... ...++..++.+|...|++++|.+.+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444445555554444444432 1110 1334555555555555555555555544
No 211
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.41 Score=43.84 Aligned_cols=88 Identities=11% Similarity=-0.021 Sum_probs=54.1
Q ss_pred HHHhCCChhHHHHHHHHHHHc---CCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHHHHhc
Q 010837 324 GYGKNGNPNQALELFCMMQEC---CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK-MEHYACMVDLLGRA 399 (499)
Q Consensus 324 ~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 399 (499)
-..+.|++.+|.+.|.+.+.. +..|+...|.....+..+.|+.++|+.--++.. .+.+. ...|-.-..++...
T Consensus 258 ~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~l 334 (486)
T KOG0550|consen 258 DAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLAL 334 (486)
T ss_pred hHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHH
Confidence 345677788888888777653 234445556666666777788877777766665 33332 22333334445566
Q ss_pred CCHHHHHHHHHhCCC
Q 010837 400 GSLEQALKFVLEMPE 414 (499)
Q Consensus 400 ~~~~~a~~~~~~~~~ 414 (499)
++|++|.+-|+...+
T Consensus 335 e~~e~AV~d~~~a~q 349 (486)
T KOG0550|consen 335 EKWEEAVEDYEKAMQ 349 (486)
T ss_pred HHHHHHHHHHHHHHh
Confidence 777777777776554
No 212
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.02 Score=52.05 Aligned_cols=95 Identities=9% Similarity=0.047 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 010837 387 EHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464 (499)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 464 (499)
.++..|..+|.+.+++.+|++.-.+... ++|....-.-..+|...|+++.|+..|+++++..|.+ ..+-..++.+-.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N-ka~~~el~~l~~ 336 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN-KAARAELIKLKQ 336 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc-HHHHHHHHHHHH
Confidence 4678889999999999999999998877 6788888888999999999999999999999999998 777778888777
Q ss_pred hcCChHHH-HHHHHHHHhC
Q 010837 465 AAGKWDSV-TELREKMKLR 482 (499)
Q Consensus 465 ~~g~~~~A-~~~~~~~~~~ 482 (499)
+..+..+. .++|..|...
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 77666554 6788888654
No 213
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.69 E-value=0.0039 Score=43.51 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-----C---CC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Q 010837 386 MEHYACMVDLLGRAGSLEQALKFVLEMPE-----K---PN-SDVWAALLSSCRLHDDVEMANIAANEIFKL 447 (499)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~---~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 447 (499)
..+|+.+...|...|++++|+..|++..+ . |+ ..++..+...+...|++++|++.+++..+.
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45789999999999999999999988764 1 32 567888999999999999999999998763
No 214
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.63 E-value=0.0073 Score=41.43 Aligned_cols=58 Identities=16% Similarity=0.183 Sum_probs=37.6
Q ss_pred HHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 394 DLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
..|.+.+++++|.++++.+.. +.+...+......+.+.|++++|.+.++...+.+|+.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~ 62 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDD 62 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCc
Confidence 445666777777777766665 3344555666666677777777777777777666654
No 215
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.51 E-value=0.63 Score=42.41 Aligned_cols=286 Identities=16% Similarity=0.153 Sum_probs=177.1
Q ss_pred HHHHHHHHH--hCCChhHHHHHHHhcc---CCChHhHHHHH--HHHHhCCCHHHHHHHHHhcCC-CChhhHHHHHHHH--
Q 010837 189 YTALVDSYV--KGGKTSYARIVFDMML---EKNVICSTSMI--SGFMSQGFVEDAEEIFRKTVE-KDIVVYNAMIEGY-- 258 (499)
Q Consensus 189 ~~~l~~~~~--~~g~~~~A~~~~~~~~---~~~~~~~~~l~--~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~ll~~~-- 258 (499)
|..|-.++. -.||-..|.++-.+-. ..|......++ ++-.-.|+++.|.+-|+.|.. |.. -..-+.++
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEt--RllGLRgLyl 162 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPET--RLLGLRGLYL 162 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHH--HHHhHHHHHH
Confidence 444444443 3566666666655432 23444444443 334567899999999998873 332 22222222
Q ss_pred -hcChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC-----CChh--HHHHHHHHHHh---
Q 010837 259 -SISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-----KNVF--TWTSMIDGYGK--- 327 (499)
Q Consensus 259 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~--~~~~l~~~~~~--- 327 (499)
.+..|..+.|..+-+..-..-.. -.......+...+..|+++.|+++++.-.. +++. .-..|+.+-..
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l 241 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL 241 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence 23447777777777666554322 245677888999999999999999987653 3332 22223332221
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHH-
Q 010837 328 NGNPNQALELFCMMQECCVQPNYV-TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA- 405 (499)
Q Consensus 328 ~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a- 405 (499)
..+...|...-.+..+ +.||.. .-.....++.+.|++.++-.+++.+- + ..|.+.++...+ +.+.|+....
T Consensus 242 dadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aW-K--~ePHP~ia~lY~--~ar~gdta~dR 314 (531)
T COG3898 242 DADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAW-K--AEPHPDIALLYV--RARSGDTALDR 314 (531)
T ss_pred cCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHH-h--cCCChHHHHHHH--HhcCCCcHHHH
Confidence 2345555555544444 566654 23344567889999999999999998 3 355555443333 3455553221
Q ss_pred -H--HHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhc-CChHHHHHHHHHHHh
Q 010837 406 -L--KFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA-GKWDSVTELREKMKL 481 (499)
Q Consensus 406 -~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 481 (499)
. +-+..|+ +.+..+...+..+....|++..|..--+......|.- ..|..|...-... |+-.++...+-+-.+
T Consensus 315 lkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre--s~~lLlAdIeeAetGDqg~vR~wlAqav~ 391 (531)
T COG3898 315 LKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE--SAYLLLADIEEAETGDQGKVRQWLAQAVK 391 (531)
T ss_pred HHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh--hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence 1 1223333 3566778888889999999999988888777766654 7788888876654 999999998887776
Q ss_pred CCCccC
Q 010837 482 RGVLKD 487 (499)
Q Consensus 482 ~~~~~~ 487 (499)
.--.|+
T Consensus 392 APrdPa 397 (531)
T COG3898 392 APRDPA 397 (531)
T ss_pred CCCCCc
Confidence 554443
No 216
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.51 E-value=0.016 Score=53.90 Aligned_cols=97 Identities=16% Similarity=0.105 Sum_probs=69.8
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHH
Q 010837 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNS----DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVAL 459 (499)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 459 (499)
+...++.+..+|...|++++|+..|++..+ .|+. .+|..+..+|...|+.++|++.++++++.+ + ..|..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels--n--~~f~~i 149 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY--N--LKFSTI 149 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--c--hhHHHH
Confidence 567888899999999999999999988776 5664 358889999999999999999999998863 1 123221
Q ss_pred HH--HHHhcCChHHHHHHHHHHHhCCCc
Q 010837 460 SN--TLAAAGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 460 ~~--~~~~~g~~~~A~~~~~~~~~~~~~ 485 (499)
.. .+....+..+..++++...+-|..
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 11 112233445777788877777753
No 217
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.43 E-value=1.3 Score=44.98 Aligned_cols=261 Identities=9% Similarity=0.001 Sum_probs=119.9
Q ss_pred HHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcC---CCChhhHHHHHHHHhcChhhHH
Q 010837 190 TALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV---EKDIVVYNAMIEGYSISIETAR 266 (499)
Q Consensus 190 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~ 266 (499)
...+..+.+.+++....+++..- ..+.........+....|+.++|.+..+.+- ......++.++..+
T Consensus 103 ~~~l~~La~~~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~-------- 173 (644)
T PRK11619 103 SRFVNELARREDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVW-------- 173 (644)
T ss_pred HHHHHHHHHccCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHH--------
Confidence 34455566778888877744332 3455556667777888888877766665543 22233444444444
Q ss_pred HHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCC
Q 010837 267 KALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCV 346 (499)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 346 (499)
.+.|.-.+..++.- +......|+...|..+...+..........++..+. +...+..++.. +
T Consensus 174 ---------~~~g~lt~~d~w~R-~~~al~~~~~~lA~~l~~~l~~~~~~~a~a~~al~~---~p~~~~~~~~~-----~ 235 (644)
T PRK11619 174 ---------QQSGKQDPLAYLER-IRLAMKAGNTGLVTYLAKQLPADYQTIASALIKLQN---DPNTVETFART-----T 235 (644)
T ss_pred ---------HHcCCCCHHHHHHH-HHHHHHCCCHHHHHHHHHhcChhHHHHHHHHHHHHH---CHHHHHHHhhc-----c
Confidence 33333222233322 333445566666666555552211112222222221 12222222111 1
Q ss_pred CCCHHH---HHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC--hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHH
Q 010837 347 QPNYVT---FLGALSACGHAGLVDKGREIFESMERDYSMKPK--MEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDV 420 (499)
Q Consensus 347 ~p~~~~---~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~ 420 (499)
.|+... ....+.-+ ...+.+.|...+.......++.+. ..++..+.......+...+|...+..... ..+...
T Consensus 236 ~~~~~~~~~~~~~l~Rl-ar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~~~~~~ 314 (644)
T PRK11619 236 GPTDFTRQMAAVAFASV-ARQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRSQSTSL 314 (644)
T ss_pred CCChhhHHHHHHHHHHH-HHhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccccCCcHH
Confidence 122111 11111111 223446666666655433333332 12233333333332224455555555433 223344
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHH
Q 010837 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479 (499)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 479 (499)
...-+......++++.+...+..|...... ...-..-+++++.+.|+.++|...|+..
T Consensus 315 ~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 315 LERRVRMALGTGDRRGLNTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHHHHHHccCHHHHHHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444445666666666666655432222 2445555666666666666666666654
No 218
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=1.1 Score=44.35 Aligned_cols=111 Identities=10% Similarity=0.131 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 010837 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSC 428 (499)
Q Consensus 349 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~ 428 (499)
..-+.+--+.-+...|+..+|.++-++.+ -||...|-.-+.++...++|++-+++-+..+. +.-|.-.+.+|
T Consensus 683 ~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks---PIGy~PFVe~c 754 (829)
T KOG2280|consen 683 VDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS---PIGYLPFVEAC 754 (829)
T ss_pred ccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---CCCchhHHHHH
Confidence 33445555566677899999999877665 58888888889999999999998887776664 46677788999
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHH
Q 010837 429 RLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476 (499)
Q Consensus 429 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 476 (499)
.+.|+.++|...+-+. .-+...+.+|.+.|++.+|.+.-
T Consensus 755 ~~~~n~~EA~KYiprv---------~~l~ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRV---------GGLQEKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred HhcccHHHHhhhhhcc---------CChHHHHHHHHHhccHHHHHHHH
Confidence 9999999998887653 12227888899999998887654
No 219
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.39 E-value=0.59 Score=45.41 Aligned_cols=90 Identities=14% Similarity=0.093 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHH--------
Q 010837 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSD-------- 419 (499)
Q Consensus 349 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~-------- 419 (499)
+..+...+..-+.+...+..|-++|..|- + ...+++.....++|++|..+-++..+ .|++.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~g-D---------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMG-D---------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLA 815 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhc-c---------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhh
Confidence 34455555555666777888888888875 1 24577888999999999999998887 34432
Q ss_pred ---HHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 010837 420 ---VWAALLSSCRLHDDVEMANIAANEIFKLN 448 (499)
Q Consensus 420 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (499)
-|.-.-.+|.+.|+..+|.++++++....
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna 847 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA 847 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence 23334567889999999999999887643
No 220
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.37 E-value=0.041 Score=47.32 Aligned_cols=114 Identities=15% Similarity=0.148 Sum_probs=76.4
Q ss_pred HHHHhccCC--CCChHHHHHHHHHHHh-----CCChhhHHHHHHHHHHcCCCCChhhHHHHhhhcccccc----------
Q 010837 99 AGQMFDELP--QRTLSAYNYMIAGYLK-----NGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRS---------- 161 (499)
Q Consensus 99 A~~~~~~~~--~~~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---------- 161 (499)
.+..|+... ++|-.+|-..+..+.. .+.++=....++.|.+.|+.-|..+|+.||..+=+..-
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 344455544 4566666666665543 35566677778889999999999999999988722110
Q ss_pred -CCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCCh-hHHHHHHHhc
Q 010837 162 -NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKT-SYARIVFDMM 212 (499)
Q Consensus 162 -~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 212 (499)
.-...-+-+..++++|...|+.||..+-..|++++++.+-. .+..++.-.|
T Consensus 133 ~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 01112234677899999999999999999999999887763 3344444444
No 221
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.33 E-value=0.099 Score=46.26 Aligned_cols=149 Identities=8% Similarity=-0.056 Sum_probs=63.7
Q ss_pred CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhH----HHHHHHHHHhcCCHH
Q 010837 328 NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEH----YACMVDLLGRAGSLE 403 (499)
Q Consensus 328 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~----~~~l~~~~~~~~~~~ 403 (499)
+|+..+|...|+++.+. .+-|...+...=.+|...|+.+.-...++++..+ ..++... -..+.-++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 34444555555554443 3334444444444455555554444444444421 1222211 122222333455555
Q ss_pred HHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc---CCCCCCchhHHHHHHHHhcCChHHHHHHHHH
Q 010837 404 QALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKL---NANDRPGAYVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 404 ~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
+|.+.-++..+ +.|.-.-.++...+-..|+.+++.++..+-... +.-.-...|....-.+...+.++.|+++|++
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 55555555544 233334444444444455555555444332211 0000022344444445555555555555554
Q ss_pred H
Q 010837 479 M 479 (499)
Q Consensus 479 ~ 479 (499)
=
T Consensus 273 e 273 (491)
T KOG2610|consen 273 E 273 (491)
T ss_pred H
Confidence 3
No 222
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.32 E-value=0.38 Score=44.37 Aligned_cols=166 Identities=12% Similarity=0.057 Sum_probs=104.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcC---CCCCHHHHHHHHHHHcc---cCcHHHHHHHHHHchHhcCCCCChhHHH
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECC---VQPNYVTFLGALSACGH---AGLVDKGREIFESMERDYSMKPKMEHYA 390 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~p~~~~~~ 390 (499)
+...++-+|....+++...++.+.|.... +.-....--...-|+.+ .|+.++|.+++..+... .-.++..+|.
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~g 221 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLG 221 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHH
Confidence 33456667889999999999999998741 11112222233445566 89999999999995533 4456778888
Q ss_pred HHHHHHHh---------cCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhcCC----HHHHHHHH---HH-HHhcC---C
Q 010837 391 CMVDLLGR---------AGSLEQALKFVLEMPE-KPNSDVWAALLSSCRLHDD----VEMANIAA---NE-IFKLN---A 449 (499)
Q Consensus 391 ~l~~~~~~---------~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~----~~~a~~~~---~~-~~~~~---~ 449 (499)
.+...|-. ....++|+..|.+.-+ +|+..+--.++..+...|. -.+..++- .. +.+.| .
T Consensus 222 L~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 222 LLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 88877632 2347889999988766 4544322222222222232 12222222 11 11233 3
Q ss_pred CCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 450 NDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 450 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
..+...+.+++.++.-.|++++|.+..++|.+..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 3335566688889999999999999999998753
No 223
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.29 E-value=0.083 Score=42.13 Aligned_cols=71 Identities=14% Similarity=0.192 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchH----hcCCCCChhH
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMER----DYSMKPKMEH 388 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~p~~~~ 388 (499)
....++..+...|++++|..+.+.+.... +-|...|..+|.+|...|+...|.++|+.+.+ +.|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 45556667778888888888888888763 55777888888888888888888888877642 4577786654
No 224
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.21 E-value=0.17 Score=38.30 Aligned_cols=140 Identities=14% Similarity=0.122 Sum_probs=81.0
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHH
Q 010837 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQA 405 (499)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a 405 (499)
.-.|..++..++..+.... .+..-++-++.-....-+-+-..++++.+-+-+.+.+- ...-.++.+|.+.|.
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRNK---- 84 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhcc----
Confidence 3457777777777777653 34445555554444444555555666555433332221 011233444444333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 010837 406 LKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 485 (499)
+.......+......|+-+.-.++++++.+.+ ++++.....+..+|.+.|+..++.+++.+..+.|++
T Consensus 85 -----------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 -----------LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -----------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34455566778888899998888888887643 334788899999999999999999999999998875
No 225
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.15 E-value=0.076 Score=48.33 Aligned_cols=129 Identities=12% Similarity=0.002 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCC---------CChhHHHHHHHHHHhCCChhHHHHHHHHHHH----cCC-CCCH
Q 010837 285 KLGSALVDMYAKCGKIDDARRVFDHMQQ---------KNVFTWTSMIDGYGKNGNPNQALELFCMMQE----CCV-QPNY 350 (499)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~----~~~-~p~~ 350 (499)
..|..|...|.-.|+++.|+..-+.-.. ..-..+..+..++.-.|+++.|.+.|+.-.. .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4556666667777888888765443221 1234566677788888888888888876432 221 2233
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHchH---hc-CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 010837 351 VTFLGALSACGHAGLVDKGREIFESMER---DY-SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMP 413 (499)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~---~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 413 (499)
.+..+|..+|.-..++++|+.++.+-.. .. ...-....|.+|..+|...|..++|+.+.+...
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 4455667777777788888877765431 11 111234567788888888888888887765543
No 226
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.03 E-value=0.13 Score=44.01 Aligned_cols=134 Identities=10% Similarity=-0.001 Sum_probs=102.1
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CCCHHHH-----HH
Q 010837 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVW-----AA 423 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~-----~~ 423 (499)
..+.++..+.-.|.+.-....+.+..++ .-+-++.....|++.-.+.|+.+.|...|++..+ +.+..+. ..
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3456677777788888889999999843 3334777888899999999999999999996654 2232333 33
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 010837 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487 (499)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 487 (499)
....+.-++++..|...+.++...++.. +...+.-+-++.-.|+..+|.+.++.|......|.
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~-~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRN-AVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCc-hhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 3345667789999999999999998887 77777777777778999999999999987654443
No 227
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.03 E-value=1.2 Score=42.11 Aligned_cols=57 Identities=11% Similarity=0.025 Sum_probs=28.9
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCC-CCHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 321 MIDGYGKNGNPNQALELFCMMQECCVQ-PNYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
+..++.+.|+.++|.+.+++|.+.... .+......|+.++...+.+.++..++.+..
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 444444556666666666665543211 122244455555555666666665555543
No 228
>PRK15331 chaperone protein SicA; Provisional
Probab=96.02 E-value=0.15 Score=40.63 Aligned_cols=91 Identities=11% Similarity=0.025 Sum_probs=53.5
Q ss_pred HHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHH
Q 010837 324 GYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLE 403 (499)
Q Consensus 324 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~ 403 (499)
-+...|++++|..+|.-+.-.+ .-|..-+..|..+|-..+++++|...|..... .+ .-|+..+-....+|...|+.+
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~-l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFT-LL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cc-cCCCCccchHHHHHHHhCCHH
Confidence 3445677777777777665543 22333345555556666777777777766552 11 123334445566777777777
Q ss_pred HHHHHHHhCCCCCC
Q 010837 404 QALKFVLEMPEKPN 417 (499)
Q Consensus 404 ~a~~~~~~~~~~~~ 417 (499)
.|+..|....++|.
T Consensus 123 ~A~~~f~~a~~~~~ 136 (165)
T PRK15331 123 KARQCFELVNERTE 136 (165)
T ss_pred HHHHHHHHHHhCcc
Confidence 77777776666443
No 229
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.01 E-value=0.19 Score=39.06 Aligned_cols=71 Identities=17% Similarity=0.141 Sum_probs=45.8
Q ss_pred HHHHhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 010837 394 DLLGRAGSLEQALKFVLEMPEK-----PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464 (499)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 464 (499)
....+.|++++|.+.|+.+..+ -....-..|+.+|.+.+++++|...+++.++++|.....-|.....++.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~ 93 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS 93 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence 3345667777777777777662 2234555677777778888888888888887777654444544444433
No 230
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.00 E-value=0.017 Score=34.81 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=26.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHH
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 460 (499)
++..+..+|...|++++|+++++++++..|+. +..+..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~-~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDD-PEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC-HHHHHHhh
Confidence 45566677777777777777777777777766 55555443
No 231
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.98 E-value=1.4 Score=41.13 Aligned_cols=128 Identities=14% Similarity=0.133 Sum_probs=94.8
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHchHhcC-CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHH-HHHHHH
Q 010837 351 VTFLGALSACGHAGLVDKGREIFESMERDYS-MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDVW-AALLSS 427 (499)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~-~~l~~~ 427 (499)
..|...+.+-.+..-++.|..+|-+.. +.+ +.+++.++++++..+ ..|+...|.++|+--.. -||...| +-.+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~r-k~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLR-KEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHh-ccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 456667777777888999999999998 546 567889999999865 46888999999987665 3666554 344555
Q ss_pred HhhcCCHHHHHHHHHHHHhc--CCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 428 CRLHDDVEMANIAANEIFKL--NANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+...+|-+.|..+|+..++. ..+. ..+|..++..-..-|+...+..+=++|.+
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~-k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQL-KRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhh-hHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 67788999999999865542 1122 56888999888888988777766666544
No 232
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.92 E-value=0.3 Score=46.71 Aligned_cols=105 Identities=17% Similarity=0.227 Sum_probs=67.5
Q ss_pred HHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHH
Q 010837 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371 (499)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 371 (499)
+...+.|+++.|.++.++.. +...|..|.+...+.|+++-|++.|.+..+ |..|+-.|.-.|+.+.-.+
T Consensus 326 eLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~k 394 (443)
T PF04053_consen 326 ELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSK 394 (443)
T ss_dssp HHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHH
T ss_pred HHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHH
Confidence 44567788888887766654 566888888888888888888888877543 4455555666777776666
Q ss_pred HHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 372 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
+.+....+ |- ++....++.-.|+.++..+++.+...
T Consensus 395 l~~~a~~~-~~------~n~af~~~~~lgd~~~cv~lL~~~~~ 430 (443)
T PF04053_consen 395 LAKIAEER-GD------INIAFQAALLLGDVEECVDLLIETGR 430 (443)
T ss_dssp HHHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHHTT-
T ss_pred HHHHHHHc-cC------HHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 66555522 21 45555556666888877777766553
No 233
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.90 E-value=0.14 Score=44.30 Aligned_cols=99 Identities=15% Similarity=0.166 Sum_probs=44.4
Q ss_pred HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-----CCCHHHHHHHH
Q 010837 352 TFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-----KPNSDVWAALL 425 (499)
Q Consensus 352 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~l~ 425 (499)
.|+..+..+ +.|++..|...|....+++.-.+ ....+--|..++...|++++|..+|..+.. +.-+..+.-|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 344444332 33445555555555553321111 122333445555555555555555544433 11123444444
Q ss_pred HHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 426 SSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 426 ~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
....+.|+.++|..+|+++.+.-|..
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t 248 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGT 248 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence 44555555555555555555544443
No 234
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.84 E-value=0.066 Score=46.24 Aligned_cols=96 Identities=21% Similarity=0.209 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhCCCC-C----CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCC--CchhHHHH
Q 010837 388 HYACMVDLLGRAGSLEQALKFVLEMPEK-P----NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR--PGAYVALS 460 (499)
Q Consensus 388 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~ 460 (499)
.|+.-+. +.+.|++..|..-|....++ | ....+-.|..++...|++++|..+|..+.+..|+.. +..+.-|+
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 5776665 45778899999999988873 2 234666789999999999999999999998665541 57888999
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCC
Q 010837 461 NTLAAAGKWDSVTELREKMKLRGV 484 (499)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~~~~~~~ 484 (499)
.+..+.|+.++|..+|+++.+.-.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCC
Confidence 999999999999999999987643
No 235
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.81 E-value=0.11 Score=48.45 Aligned_cols=100 Identities=11% Similarity=-0.025 Sum_probs=65.9
Q ss_pred CCCCCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCCh----HHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHH
Q 010837 40 SNPLTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNT----NISIKLLILHLKCGALKYAGQMFDELPQRTLSAYN 115 (499)
Q Consensus 40 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 115 (499)
.+|.+...++.+..++...|++++|...|++.++.. |+. .+|..+..+|...|++++|+..+++..+.+...|.
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~f~ 147 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLKFS 147 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchhHH
Confidence 456777888888888888899999999998888775 442 35778888888888888888888877654222332
Q ss_pred HHHH--HHHhCCChhhHHHHHHHHHHcC
Q 010837 116 YMIA--GYLKNGQVEESLSLVRKLVSSG 141 (499)
Q Consensus 116 ~li~--~~~~~g~~~~a~~~~~~m~~~g 141 (499)
.+.. .+...++..+..++++.+.+.|
T Consensus 148 ~i~~DpdL~plR~~pef~eLlee~rk~G 175 (453)
T PLN03098 148 TILNDPDLAPFRASPEFKELQEEARKGG 175 (453)
T ss_pred HHHhCcchhhhcccHHHHHHHHHHHHhC
Confidence 1111 0111223345556666666655
No 236
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.79 E-value=0.57 Score=45.56 Aligned_cols=159 Identities=16% Similarity=0.128 Sum_probs=88.0
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHcc----cCcHHHHHHHHHHchHhcCCCCChh
Q 010837 318 WTSMIDGYGKNGNPNQALELFCMMQECC-VQPNY-----VTFLGALSACGH----AGLVDKGREIFESMERDYSMKPKME 387 (499)
Q Consensus 318 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~-~~p~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~p~~~ 387 (499)
...++....-.|+-+.+++.+.+..+.+ +.-.. -.|...+..++. ....+.|.++++.+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3344455555666666666666654422 11111 123333333322 45677778888777733 46554
Q ss_pred HHHH-HHHHHHhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhH-HH
Q 010837 388 HYAC-MVDLLGRAGSLEQALKFVLEMPE------KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV-AL 459 (499)
Q Consensus 388 ~~~~-l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l 459 (499)
.|.. -.+.+...|+.++|++.|++... +.....+--+...+...+++++|.+.+..+.+...-. ..+|. ..
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WS-ka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWS-KAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccH-HHHHHHHH
Confidence 4432 23445567888888888876554 1122334445556667778888888888877754332 23333 33
Q ss_pred HHHHHhcCCh-------HHHHHHHHHHH
Q 010837 460 SNTLAAAGKW-------DSVTELREKMK 480 (499)
Q Consensus 460 ~~~~~~~g~~-------~~A~~~~~~~~ 480 (499)
+-++...|+. ++|.+++.+..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 3344566766 77777776654
No 237
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=95.75 E-value=0.009 Score=33.58 Aligned_cols=33 Identities=24% Similarity=0.425 Sum_probs=28.6
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHH
Q 010837 441 ANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTE 474 (499)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 474 (499)
++++++.+|.. +.+|+.++.+|...|++++|++
T Consensus 2 y~kAie~~P~n-~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNN-AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCC-HHHHHHHHHHHHHCcCHHhhcC
Confidence 67788888888 8999999999999999998863
No 238
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.73 E-value=0.12 Score=47.11 Aligned_cols=119 Identities=18% Similarity=0.145 Sum_probs=77.4
Q ss_pred HHHHhcCChHHHHHHHHhcCC------------------CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 010837 292 DMYAKCGKIDDARRVFDHMQQ------------------KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353 (499)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~~~~------------------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 353 (499)
..|.+.|++..|..-|+++.. .-..+++.+..++.+.+++..|++.-++.+..+ ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 457888888888888777542 012355666677777777777777777777653 5556565
Q ss_pred HHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHH-HHHHHHhCCC
Q 010837 354 LGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQ-ALKFVLEMPE 414 (499)
Q Consensus 354 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~ 414 (499)
-.=..+|...|+++.|...|+.+. .+.| |..+-+.|+.+--+..+..+ ..++|..|..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~---k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKAL---KLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHH---HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 566677777778888888887777 4456 55555556655555444443 3556666654
No 239
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.64 E-value=1.9 Score=40.27 Aligned_cols=244 Identities=13% Similarity=0.075 Sum_probs=126.5
Q ss_pred HHHHHHHHcCCCCchh-HHHHHHHHHHhCCChhHHHHHHHhcc--------CCChHhHHHHHHHHHhCCCHHHHHHHHHh
Q 010837 172 MVHAQILKCDVKADDV-LYTALVDSYVKGGKTSYARIVFDMML--------EKNVICSTSMISGFMSQGFVEDAEEIFRK 242 (499)
Q Consensus 172 ~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 242 (499)
+++......-+.|+.. +...|...+.. +.+++..+.+.+. +.=+.++..++...++.++..+|.+.+.-
T Consensus 246 q~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~l 323 (549)
T PF07079_consen 246 QILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLAL 323 (549)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 3333334444455543 34445554444 4455544444432 22356788888889999999999887765
Q ss_pred cC--CCChhh-------HHHHHHHHhcChhhH---HHHHHHHHHHHHcccCCCchhHHHH---HHHHHhcCC-hHHHHHH
Q 010837 243 TV--EKDIVV-------YNAMIEGYSISIETA---RKALEVHCQLIKNVFFEDVKLGSAL---VDMYAKCGK-IDDARRV 306 (499)
Q Consensus 243 ~~--~~~~~~-------~~~ll~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~g~-~~~a~~~ 306 (499)
+. +|+... -..+....+...... ..-+.+++......+... .....| ..-+-+.|. -++|.++
T Consensus 324 L~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrq-QLvh~L~~~Ak~lW~~g~~dekalnL 402 (549)
T PF07079_consen 324 LKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQ-QLVHYLVFGAKHLWEIGQCDEKALNL 402 (549)
T ss_pred HHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHH-HHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 54 443321 112222222111111 122334444444333211 111112 222344454 6677777
Q ss_pred HHhcCC---CChhHHHHHH----HHHHh---CCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHH--HcccCcHHHHH
Q 010837 307 FDHMQQ---KNVFTWTSMI----DGYGK---NGNPNQALELFCMMQECCVQPNY----VTFLGALSA--CGHAGLVDKGR 370 (499)
Q Consensus 307 ~~~~~~---~~~~~~~~l~----~~~~~---~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~--~~~~~~~~~a~ 370 (499)
++.+.+ -|...-|.+. .+|.+ ...+.+-..+-+-+.+.|++|-. ..-+.|.+| +...|++.++.
T Consensus 403 Lk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 403 LKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 777664 2333333222 12221 22344444444445566666532 333444333 44567787777
Q ss_pred HHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH
Q 010837 371 EIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA 423 (499)
Q Consensus 371 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 423 (499)
-.-..+. .+.|++.+|..+.-++....++++|..++..+. |+..++++
T Consensus 483 ~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds 530 (549)
T PF07079_consen 483 LYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS 530 (549)
T ss_pred HHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence 6665555 567888888888888888888888888888776 35555543
No 240
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.61 E-value=0.14 Score=44.24 Aligned_cols=100 Identities=14% Similarity=0.203 Sum_probs=78.0
Q ss_pred HHHHHHHhcC--CCChhHHHHHHHHHHh-----CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccC----------
Q 010837 302 DARRVFDHMQ--QKNVFTWTSMIDGYGK-----NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG---------- 364 (499)
Q Consensus 302 ~a~~~~~~~~--~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---------- 364 (499)
..+..|..+. +.|-.+|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666665 5677788888877764 3567777788899999999999999999998876543
Q ss_pred ------cHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCH
Q 010837 365 ------LVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSL 402 (499)
Q Consensus 365 ------~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~ 402 (499)
+-+-++++++.|. .+|+.||..+-..|+.++++.+..
T Consensus 132 F~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhcccccc
Confidence 2245788999998 889999999999999999887753
No 241
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.56 E-value=2.4 Score=44.65 Aligned_cols=153 Identities=10% Similarity=0.051 Sum_probs=80.0
Q ss_pred CChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhc---ChhhHHHHHHHHHHHH
Q 010837 200 GKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI---SIETARKALEVHCQLI 276 (499)
Q Consensus 200 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~---~~~~~~~a~~~~~~~~ 276 (499)
++++.|+.-+.++. ...|.-.+..--+.|.+.+|+.++ .|+...+.....+|+. ....+++|.-.|+..-
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly----~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~G 966 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY----KPDSEKQKVIYEAYADHLREELMSDEAALMYERCG 966 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee----ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhc
Confidence 34444444444433 222333333344455555555554 3555555544444321 1234444444444332
Q ss_pred HcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhH---HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHH
Q 010837 277 KNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFT---WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTF 353 (499)
Q Consensus 277 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~ 353 (499)
+. ...+.+|..+|++.+|..+-.++...-... -..|..-+...+++-+|-++..+.... |
T Consensus 967 kl---------ekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~----- 1029 (1265)
T KOG1920|consen 967 KL---------EKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P----- 1029 (1265)
T ss_pred cH---------HHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----
Confidence 21 224566777777777777777766542222 256777777888888888887776542 1
Q ss_pred HHHHHHHcccCcHHHHHHHHHHc
Q 010837 354 LGALSACGHAGLVDKGREIFESM 376 (499)
Q Consensus 354 ~~ll~~~~~~~~~~~a~~~~~~~ 376 (499)
...+..+++...+++|..+-...
T Consensus 1030 ~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1030 EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHHhhHhHHHHHHHHHHhc
Confidence 22334445555666666654433
No 242
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.53 E-value=2.8 Score=41.43 Aligned_cols=86 Identities=12% Similarity=0.003 Sum_probs=43.9
Q ss_pred CCCcchHHHHHHhhhCCCChhhHHHHHHHHHHh-CCC--------CChHHHHHHHHHHHcCCChhHHHHHhccCCCCChH
Q 010837 42 PLTATSLPSALQHYINSDTPFYGLKIHAHITKT-GVK--------PNTNISIKLLILHLKCGALKYAGQMFDELPQRTLS 112 (499)
Q Consensus 42 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 112 (499)
-|-+..|..+.......-.++.|...|-+.... |++ .+...-.+=+.+ --|++++|++++-.+.++|..
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrDLA 766 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRDLA 766 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhhhh
Confidence 344555655555555555555555555433221 221 111111122222 248999999999888877643
Q ss_pred HHHHHHHHHHhCCChhhHHHHH
Q 010837 113 AYNYMIAGYLKNGQVEESLSLV 134 (499)
Q Consensus 113 ~~~~li~~~~~~g~~~~a~~~~ 134 (499)
|..+.+.|+|-.+.+++
T Consensus 767 -----ielr~klgDwfrV~qL~ 783 (1189)
T KOG2041|consen 767 -----IELRKKLGDWFRVYQLI 783 (1189)
T ss_pred -----HHHHHhhhhHHHHHHHH
Confidence 34444555555554444
No 243
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=1.6 Score=38.48 Aligned_cols=170 Identities=15% Similarity=0.090 Sum_probs=102.6
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcC
Q 010837 302 DARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS 381 (499)
Q Consensus 302 ~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 381 (499)
...+++++...+....-..-.......|++.+|..+|+...... +-+...-..+..+|...|+.+.|..++..+-.+..
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~ 199 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ 199 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence 34445555444322222223344567788888888888877653 22345556677888888888888888887653211
Q ss_pred CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc--CCCCCCchhHH
Q 010837 382 MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKP-NSDVWAALLSSCRLHDDVEMANIAANEIFKL--NANDRPGAYVA 458 (499)
Q Consensus 382 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 458 (499)
.........-+..+.+.....+...+-.+.-..| |...-..+...+...|+.+.|.+.+=.+++. +... ...-..
T Consensus 200 -~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d-~~~Rk~ 277 (304)
T COG3118 200 -DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFED-GEARKT 277 (304)
T ss_pred -hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC-cHHHHH
Confidence 1111111223344444444444444444444444 6667777788888889999888877776654 3333 677788
Q ss_pred HHHHHHhcCChHHHHH
Q 010837 459 LSNTLAAAGKWDSVTE 474 (499)
Q Consensus 459 l~~~~~~~g~~~~A~~ 474 (499)
++..+...|.-+.+..
T Consensus 278 lle~f~~~g~~Dp~~~ 293 (304)
T COG3118 278 LLELFEAFGPADPLVL 293 (304)
T ss_pred HHHHHHhcCCCCHHHH
Confidence 8888888885554433
No 244
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.51 E-value=1.3 Score=37.54 Aligned_cols=53 Identities=13% Similarity=0.213 Sum_probs=27.4
Q ss_pred HHHHHHhCCChhHHHHHHHhccCC------ChHhHHHHHHHHHhCCCHHHHHHHHHhcC
Q 010837 192 LVDSYVKGGKTSYARIVFDMMLEK------NVICSTSMISGFMSQGFVEDAEEIFRKTV 244 (499)
Q Consensus 192 l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 244 (499)
....+...|++++|++.|+.+... .....-.++.++.+.|++++|...+++..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi 69 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFI 69 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334455566666666666666431 12234445555666666666666665544
No 245
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.46 E-value=0.15 Score=39.10 Aligned_cols=97 Identities=14% Similarity=0.075 Sum_probs=51.8
Q ss_pred CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHH
Q 010837 349 NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM-PEKPNSDVWAALLSS 427 (499)
Q Consensus 349 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~l~~~ 427 (499)
|..++..++.++++.|+++....+++..- |+..+...- .+. +..- .-.|+..+..+++.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~W---gI~~~~~~~---------~~~-------~~~~spl~Pt~~lL~AIv~s 61 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVW---GIDVNGKKK---------EGD-------YPPSSPLYPTSRLLIAIVHS 61 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhc---CCCCCCccc---------cCc-------cCCCCCCCCCHHHHHHHHHH
Confidence 34566667777777777777766665544 444432100 000 0000 003666666677777
Q ss_pred HhhcCCHHHHHHHHHHHHhcC-CCCCCchhHHHHHHHH
Q 010837 428 CRLHDDVEMANIAANEIFKLN-ANDRPGAYVALSNTLA 464 (499)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 464 (499)
|+..|++..|.++++...+.- ++.....|..|++-..
T Consensus 62 f~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 62 FGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 766677777777666665532 2222445555555433
No 246
>PRK11906 transcriptional regulator; Provisional
Probab=95.23 E-value=0.43 Score=44.89 Aligned_cols=159 Identities=12% Similarity=0.080 Sum_probs=104.0
Q ss_pred hHH--HHHHHHHHhC-----CChhHHHHHHHHHHHc-CCCCCH-HHHHHHHHHHcc---------cCcHHHHHHHHHHch
Q 010837 316 FTW--TSMIDGYGKN-----GNPNQALELFCMMQEC-CVQPNY-VTFLGALSACGH---------AGLVDKGREIFESME 377 (499)
Q Consensus 316 ~~~--~~l~~~~~~~-----g~~~~a~~~~~~m~~~-~~~p~~-~~~~~ll~~~~~---------~~~~~~a~~~~~~~~ 377 (499)
..| ..++.+.... ...+.|+.+|.+.... ...|+. ..|..+..++.. ..+..+|.+.-++..
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 455 5555555442 2356788888888721 245553 456666555432 223456666666666
Q ss_pred HhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCC-
Q 010837 378 RDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPN-SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRP- 453 (499)
Q Consensus 378 ~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~- 453 (499)
.+.| |......+..++.-.++++.|..+|++... .|| ..+|......+.-.|+.++|.+.+++..+..|.--.
T Consensus 332 ---eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~ 408 (458)
T PRK11906 332 ---DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKA 408 (458)
T ss_pred ---hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHH
Confidence 4455 677777777777888889999999999887 454 456666666777899999999999999888876522
Q ss_pred chhHHHHHHHHhcCChHHHHHHHHH
Q 010837 454 GAYVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
......+..|... ..++|.+++-+
T Consensus 409 ~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 409 VVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHHHcCC-chhhhHHHHhh
Confidence 2233333355554 45777777644
No 247
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.12 E-value=3.5 Score=40.16 Aligned_cols=160 Identities=16% Similarity=0.128 Sum_probs=104.8
Q ss_pred HHHHHHHHhCCChhhHHHHHHHHHHc-CCCCCh-----hhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhH
Q 010837 115 NYMIAGYLKNGQVEESLSLVRKLVSS-GERPDG-----YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVL 188 (499)
Q Consensus 115 ~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~-----~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 188 (499)
..+++...-.|+-+.+++.+.+-.+. |+.-.. ..|..++..+..... ...+.+.+.+++..+.+. -|+...
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~-~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDG-EDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcc-cCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 34555566689999999999886654 222221 245555554432111 466778888888888764 466555
Q ss_pred HHH-HHHHHHhCCChhHHHHHHHhccCC-------ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCC---ChhhHHHHHHH
Q 010837 189 YTA-LVDSYVKGGKTSYARIVFDMMLEK-------NVICSTSMISGFMSQGFVEDAEEIFRKTVEK---DIVVYNAMIEG 257 (499)
Q Consensus 189 ~~~-l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~ll~~ 257 (499)
|.. -.+.+...|++++|++.|+..... ....+--+...++-.+++++|.+.|..+.+. ....|..+..+
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~ 348 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA 348 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 543 445677889999999999976431 2345666778888899999999999998843 34556666666
Q ss_pred HhcChhhH-------HHHHHHHHHHHH
Q 010837 258 YSISIETA-------RKALEVHCQLIK 277 (499)
Q Consensus 258 ~~~~~~~~-------~~a~~~~~~~~~ 277 (499)
|....+.. ++|..++.++..
T Consensus 349 c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 349 CLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 65444555 666666666543
No 248
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.12 E-value=1.8 Score=36.87 Aligned_cols=113 Identities=12% Similarity=0.099 Sum_probs=66.9
Q ss_pred cCcHHHHHHHHHHchHhcC----CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------CCCH-HHHHHHHHHHhh
Q 010837 363 AGLVDKGREIFESMERDYS----MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-------KPNS-DVWAALLSSCRL 430 (499)
Q Consensus 363 ~~~~~~a~~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~-~~~~~l~~~~~~ 430 (499)
..++++|+++|++...-.. ...-...|..+.+.+.+..++++|-..+.+-.. -++. ..|...|-.+..
T Consensus 123 nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~ 202 (308)
T KOG1585|consen 123 NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLY 202 (308)
T ss_pred cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhh
Confidence 3456666666665442111 011123455666677777888777666554433 1222 345556666777
Q ss_pred cCCHHHHHHHHHHHHhcC----CCCCCchhHHHHHHHHhcCChHHHHHHHH
Q 010837 431 HDDVEMANIAANEIFKLN----ANDRPGAYVALSNTLAAAGKWDSVTELRE 477 (499)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 477 (499)
..|+..|...++.-.+.+ ++. ..+...|+.+| ..|+.+++.+++.
T Consensus 203 ~~Dyv~aekc~r~~~qip~f~~sed-~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 203 AHDYVQAEKCYRDCSQIPAFLKSED-SRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHhcchhcCccccChHH-HHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 788999988888755532 222 56677777777 4567777776654
No 249
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.11 E-value=0.21 Score=37.67 Aligned_cols=103 Identities=20% Similarity=0.168 Sum_probs=69.6
Q ss_pred HHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCC----HHHHHHHHHHHhhc
Q 010837 359 ACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPN----SDVWAALLSSCRLH 431 (499)
Q Consensus 359 ~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~----~~~~~~l~~~~~~~ 431 (499)
+....|+++.|++.|.... .+-| ....||.-..++.-.|+.++|++-+++..+ .+. -..|..-...|...
T Consensus 52 alaE~g~Ld~AlE~F~qal---~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQAL---CLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHhccchHHHHHHHHHHH---HhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHh
Confidence 4567788888888888777 4455 667788888888888888888888877765 121 12344444556777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh
Q 010837 432 DDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465 (499)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (499)
|+.+.|..-|+.+-+.|... ...-...++=|+.
T Consensus 129 g~dd~AR~DFe~AA~LGS~F-Ar~QLV~lNPYAA 161 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLGSKF-AREQLVELNPYAA 161 (175)
T ss_pred CchHHHHHhHHHHHHhCCHH-HHHHHHhcChHHH
Confidence 88888888888888877655 4333344444443
No 250
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.99 E-value=1 Score=42.71 Aligned_cols=61 Identities=11% Similarity=0.085 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC---CHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010837 386 MEHYACMVDLLGRAGSLEQALKFVLEMPE-KP---NSDVWAALLSSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (499)
..+-..|..+..+.|+.++|++.++++.+ .| +......|+.++...+.+.++..++.+--+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 33445567777778888888888887764 22 234566777888888888888877777543
No 251
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=94.94 E-value=0.14 Score=38.67 Aligned_cols=91 Identities=12% Similarity=0.012 Sum_probs=57.9
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCCh--hHHHHHHHHHHhcC
Q 010837 323 DGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM--EHYACMVDLLGRAG 400 (499)
Q Consensus 323 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~~ 400 (499)
-+++..|+.+.|++.|.+.... .+-....||.-.+++.-+|+.++|.+-+++..+-.|-+... ..|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 3556677888888888777764 34466778877788877888888887777777544433211 12222233456677
Q ss_pred CHHHHHHHHHhCCC
Q 010837 401 SLEQALKFVLEMPE 414 (499)
Q Consensus 401 ~~~~a~~~~~~~~~ 414 (499)
+-+.|..-|+..-.
T Consensus 130 ~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 130 NDDAARADFEAAAQ 143 (175)
T ss_pred chHHHHHhHHHHHH
Confidence 77777777765543
No 252
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.84 E-value=4.9 Score=40.38 Aligned_cols=322 Identities=12% Similarity=0.150 Sum_probs=154.8
Q ss_pred hhCCCChhhHHHHHHHHHHhCCCC---ChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHH
Q 010837 55 YINSDTPFYGLKIHAHITKTGVKP---NTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESL 131 (499)
Q Consensus 55 ~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 131 (499)
+.+.+.+++|++..+... |..| ...+....+..+.-.|++++|-...-.|...+..-|..-+..++..++.....
T Consensus 366 ll~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia 443 (846)
T KOG2066|consen 366 LLEKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIA 443 (846)
T ss_pred HHHhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhh
Confidence 345566666666655432 3334 34566777778888888888888887777777777777777776666554332
Q ss_pred HHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHh
Q 010837 132 SLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDM 211 (499)
Q Consensus 132 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 211 (499)
. -+.......+...|..+|..+ . .++...|..++.-+- |+.=.+..+.+.
T Consensus 444 ~---~lPt~~~rL~p~vYemvLve~-----L--------------------~~~~~~F~e~i~~Wp--~~Lys~l~iisa 493 (846)
T KOG2066|consen 444 P---YLPTGPPRLKPLVYEMVLVEF-----L--------------------ASDVKGFLELIKEWP--GHLYSVLTIISA 493 (846)
T ss_pred c---cCCCCCcccCchHHHHHHHHH-----H--------------------HHHHHHHHHHHHhCC--hhhhhhhHHHhh
Confidence 2 222222223445566666555 1 122222222222211 111111111111
Q ss_pred ccC------CChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHH-HHHHHHHHcccCCCc
Q 010837 212 MLE------KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKAL-EVHCQLIKNVFFEDV 284 (499)
Q Consensus 212 ~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~ 284 (499)
... .+...-..|+..|...+++..|+.++-...+++....-.--..+ +... ++...|.-. .
T Consensus 494 ~~~q~~q~Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~vf~lI~k~nL~-------d~i~~~Iv~Lmll~-----s 561 (846)
T KOG2066|consen 494 TEPQIKQNSESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDVFDLIKKHNLF-------DQIKDQIVLLMLLD-----S 561 (846)
T ss_pred cchHHHhhccchhHHHHHHHHHHHccChHHHHHHHHhccChHHHHHHHHHhhH-------HHHHHHHHHHHccc-----h
Confidence 111 12233444888899999999999999888766544321111111 1111 111111100 0
Q ss_pred hhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCC------ChhHHHHHHHHHHHcCCCC-----CHHHH
Q 010837 285 KLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG------NPNQALELFCMMQECCVQP-----NYVTF 353 (499)
Q Consensus 285 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g------~~~~a~~~~~~m~~~~~~p-----~~~~~ 353 (499)
...++.+....+.-....++++... ++...+..+..+.... -.++.+++|.+.-....-| .....
T Consensus 562 ---kka~~lLldn~d~ip~a~Vveql~~-~P~~l~~YL~kl~~rd~~~~~~y~dk~I~LYAEyDrk~LLPFLr~s~~Y~l 637 (846)
T KOG2066|consen 562 ---KKAIDLLLDNRDSISPSEVVEQLED-NPKLLYCYLHKLFKRDHFMGSEYHDKQIELYAEYDRKKLLPFLRKSQNYNL 637 (846)
T ss_pred ---hhHHHHHhhccccCCHHHHHHHHhc-ChHHHHHHHHHHhhcCccccchhhhHHHHHHHHHhHhhhhHHHHhcCCCCH
Confidence 0223333333333333444444442 2222222222222211 1334555555543332222 11223
Q ss_pred HHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 010837 354 LGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDD 433 (499)
Q Consensus 354 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 433 (499)
...+..|.+.|-+++-.-++.+|- .++.+|...--+.+++++|+++.++ +.|...|..||.-+...-.
T Consensus 638 ekA~eiC~q~~~~~E~VYlLgrmG---------n~k~AL~lII~el~die~AIefvKe---q~D~eLWe~LI~~~ldkPe 705 (846)
T KOG2066|consen 638 EKALEICSQKNFYEELVYLLGRMG---------NAKEALKLIINELRDIEKAIEFVKE---QDDSELWEDLINYSLDKPE 705 (846)
T ss_pred HHHHHHHHhhCcHHHHHHHHHhhc---------chHHHHHHHHHHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCcH
Confidence 344555556666666655555553 1234444444455666776666554 4577788888776655444
Q ss_pred HHH
Q 010837 434 VEM 436 (499)
Q Consensus 434 ~~~ 436 (499)
+-.
T Consensus 706 ~~~ 708 (846)
T KOG2066|consen 706 FIK 708 (846)
T ss_pred HHH
Confidence 333
No 253
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.83 E-value=2.3 Score=36.51 Aligned_cols=193 Identities=17% Similarity=0.103 Sum_probs=86.7
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC-----CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH-H
Q 010837 286 LGSALVDMYAKCGKIDDARRVFDHMQQ-----KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALS-A 359 (499)
Q Consensus 286 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~-~ 359 (499)
.+......+...+.+..+...+..... .....+......+...++...+.+.+.........+ ......... +
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 333444445555555555554444321 223334444444444555555555555554432222 111111111 4
Q ss_pred HcccCcHHHHHHHHHHchHhcCC--CCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-C-C-CHHHHHHHHHHHhhcCCH
Q 010837 360 CGHAGLVDKGREIFESMERDYSM--KPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-K-P-NSDVWAALLSSCRLHDDV 434 (499)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~-~-~~~~~~~l~~~~~~~~~~ 434 (499)
+...|+++.|...+..... ..- ......+......+...++.+.+...+.+... . . ....+..+...+...+++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 140 LYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 4555555555555555531 110 01122222233334445555555555555544 1 2 234455555555555555
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 435 EMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 435 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
+.|...+.......+.. ...+..+...+...|.++++...+++...
T Consensus 219 ~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 219 EEALEYYEKALELDPDN-AEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHhhCccc-HHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666555555554442 23344444444444455555555554443
No 254
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.81 E-value=1.6 Score=34.45 Aligned_cols=87 Identities=14% Similarity=0.052 Sum_probs=51.0
Q ss_pred hHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCC
Q 010837 47 SLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126 (499)
Q Consensus 47 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 126 (499)
....++..+...+.+.....+++.+...+ ..+...++.++..|++.++ ++....++. ..+......+++.|.+.+-
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYDP-QKEIERLDN--KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHCH-HHHHHHHHh--ccccCCHHHHHHHHHHcCc
Confidence 34566777777777888888888887776 4677777888888876532 333344431 1222223335555555555
Q ss_pred hhhHHHHHHHH
Q 010837 127 VEESLSLVRKL 137 (499)
Q Consensus 127 ~~~a~~~~~~m 137 (499)
++++.-++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555444
No 255
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.71 E-value=1.7 Score=41.82 Aligned_cols=153 Identities=17% Similarity=0.116 Sum_probs=76.5
Q ss_pred HHhcCChHHHHHHHH--hcC-CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHH
Q 010837 294 YAKCGKIDDARRVFD--HMQ-QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR 370 (499)
Q Consensus 294 ~~~~g~~~~a~~~~~--~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 370 (499)
..-.|+++++.++.+ ++. .-+....+.++.-+.+.|..+.|+++.++-. .-| ....+.|+++.|.
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~--------~rF----eLAl~lg~L~~A~ 338 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD--------HRF----ELALQLGNLDIAL 338 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH--------HHH----HHHHHCT-HHHHH
T ss_pred HHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH--------HHh----HHHHhcCCHHHHH
Confidence 344566666554443 111 1123345666666667777777776533221 112 2233557777776
Q ss_pred HHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 010837 371 EIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 371 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (499)
++.++. .+...|..|.+...+.|+++-|.+.|.+..+ |..|+-.|...|+.+.-.++.+.....|-
T Consensus 339 ~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~- 404 (443)
T PF04053_consen 339 EIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD------FSGLLLLYSSTGDREKLSKLAKIAEERGD- 404 (443)
T ss_dssp HHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC------ccccHHHHHHhCCHHHHHHHHHHHHHccC-
Confidence 654322 2445677777777777777777777777664 44455556666666666555555544432
Q ss_pred CCCchhHHHHHHHHhcCChHHHHHHHH
Q 010837 451 DRPGAYVALSNTLAAAGKWDSVTELRE 477 (499)
Q Consensus 451 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 477 (499)
++....++.-.|++++..+++.
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHH
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHH
Confidence 3334444444555555555443
No 256
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.67 E-value=0.047 Score=32.86 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=33.9
Q ss_pred chhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCccccccccC
Q 010837 454 GAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGTE 496 (499)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 496 (499)
.++..+..+|.+.|++++|.+++++..+. .|+....|..++
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~~~a~~~La 42 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--DPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCCHHHHHHhh
Confidence 57889999999999999999999999884 566666665543
No 257
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.63 E-value=2.7 Score=36.34 Aligned_cols=157 Identities=16% Similarity=0.113 Sum_probs=91.6
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHh--
Q 010837 323 DGYGKNGNPNQALELFCMMQECCV--QPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR-- 398 (499)
Q Consensus 323 ~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-- 398 (499)
..-.+.|++++|.+.|+.+..... +-...+...++.++.+.++.+.|....++..+.++-.|+.. |...|.+++.
T Consensus 42 ~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs~~~ 120 (254)
T COG4105 42 LTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLSYFF 120 (254)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHHHhc
Confidence 334556777777777777665421 11234555566666677777777777777765555555533 3333333321
Q ss_pred -----cCCHHH---HHHHHHhCCCC-------CCHHH------------HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 399 -----AGSLEQ---ALKFVLEMPEK-------PNSDV------------WAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 399 -----~~~~~~---a~~~~~~~~~~-------~~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
..+... |..-|++...+ ||... =..+.+-|.+.|.+-.|..-++++++.-+..
T Consensus 121 ~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t 200 (254)
T COG4105 121 QIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT 200 (254)
T ss_pred cCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc
Confidence 122222 22233333221 22211 1234566889999999999999999874443
Q ss_pred --CCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 452 --RPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 452 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
....+..+..+|.+.|-.++|.+.-+-+.
T Consensus 201 ~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 201 SAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred cchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 13456677888999999999988765543
No 258
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=94.59 E-value=0.95 Score=35.26 Aligned_cols=52 Identities=12% Similarity=0.040 Sum_probs=26.3
Q ss_pred HHhCCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 325 YGKNGNPNQALELFCMMQECCVQP---NYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 325 ~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
..+.|++++|.+.|+.+... .+. ....-..++.+|.+.+++++|...+++.+
T Consensus 20 ~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFi 74 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFI 74 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 34455555555555555543 111 12334445555555555555555555555
No 259
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.58 E-value=1.5 Score=39.48 Aligned_cols=130 Identities=14% Similarity=0.207 Sum_probs=81.7
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHh--cC----ChHHHHHHHHhcCCC-------ChhHHHHHHHHHHhCC
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAK--CG----KIDDARRVFDHMQQK-------NVFTWTSMIDGYGKNG 329 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~g 329 (499)
...+....+++.+.+.|+.-+..+|-+....... .. ....|..+|+.|++. +-..+..++.. ..+
T Consensus 76 ~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~ 153 (297)
T PF13170_consen 76 EAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSE 153 (297)
T ss_pred HHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccc
Confidence 4455677888899999998888777654333332 22 355788899999862 33445554433 223
Q ss_pred C----hhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHcccCc--HHHHHHHHHHchHhcCCCCChhHHHHHHHH
Q 010837 330 N----PNQALELFCMMQECCVQPNYV--TFLGALSACGHAGL--VDKGREIFESMERDYSMKPKMEHYACMVDL 395 (499)
Q Consensus 330 ~----~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 395 (499)
+ .+.++.+|+.+.+.|+..+.. ..+.++..+..... ..++.++++.+. +.|+++....|..+.-.
T Consensus 154 ~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~-~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 154 DVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK-KNGVKIKYMHYPTLGLL 226 (297)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH-HcCCccccccccHHHHH
Confidence 3 456778888888888765443 44444443332222 457888888888 55988877777665443
No 260
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.58 E-value=1.6 Score=34.83 Aligned_cols=107 Identities=21% Similarity=0.217 Sum_probs=53.1
Q ss_pred cccCcHHHHHHHHHHchHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhcCCHHHHH
Q 010837 361 GHAGLVDKGREIFESMERDYSMKPKM-EHYACMVDLLGRAGSLEQALKFVLEMPEK-PNSDVWAALLSSCRLHDDVEMAN 438 (499)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~ 438 (499)
.+.++.+.+..++..+. -+.|.. ..-..-...+.+.|+|.+|+.+|+++... |....-..|+..|....+-..=.
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 45567777777777766 445532 22222233356777777777777777663 33333444444444333222233
Q ss_pred HHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHH
Q 010837 439 IAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473 (499)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 473 (499)
..-+++.+.+..+ .-..++..+....+...|.
T Consensus 98 ~~A~evle~~~d~---~a~~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 98 RYADEVLESGADP---DARALVRALLARADLEPAH 129 (160)
T ss_pred HHHHHHHhcCCCh---HHHHHHHHHHHhccccchh
Confidence 3344455555444 2233444444444333333
No 261
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=94.37 E-value=1 Score=40.50 Aligned_cols=167 Identities=10% Similarity=0.085 Sum_probs=109.1
Q ss_pred HhCCChhHHHHHHHHHHHcC--CCCCHH------HHHHHHHHHcccCcHHHHHHHHHHchHhc-------CCCCC-----
Q 010837 326 GKNGNPNQALELFCMMQECC--VQPNYV------TFLGALSACGHAGLVDKGREIFESMERDY-------SMKPK----- 385 (499)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~~--~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~~~p~----- 385 (499)
.+.|+.+.|..++.+..... ..|+.. .|+.-...+.+..+++.|..++++..+-. ...|+
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 57899999999999986643 234332 24444444444339999999998876331 12222
Q ss_pred hhHHHHHHHHHHhcCCHH---HHHHHHHhCCC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHH
Q 010837 386 MEHYACMVDLLGRAGSLE---QALKFVLEMPE-KPN-SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALS 460 (499)
Q Consensus 386 ~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 460 (499)
..+...++.+|...+..+ +|.++++.+.. -|+ ...+..-++.+.+.++.+++.+.+.+|+..-.-+ ...+...+
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~-e~~~~~~l 162 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHS-ESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcccc-cchHHHHH
Confidence 235677888888777655 56666666644 244 4555566677777899999999999999875434 45555555
Q ss_pred HHHHh--cCChHHHHHHHHHHHhCCCccCccccccc
Q 010837 461 NTLAA--AGKWDSVTELREKMKLRGVLKDTGCSWVG 494 (499)
Q Consensus 461 ~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 494 (499)
..+.. ......|...++.+....+.|.... |++
T Consensus 163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~~-~~e 197 (278)
T PF08631_consen 163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSEDQ-WLE 197 (278)
T ss_pred HHHHHHHhhCcHHHHHHHHHHHHHHhCCChhH-HHH
Confidence 55532 2334678888888887777777655 654
No 262
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.35 E-value=3 Score=35.69 Aligned_cols=57 Identities=11% Similarity=0.125 Sum_probs=29.4
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHchHhcCC-CC-ChhHHHHHHHHHHhcCCHHHHHHHHH
Q 010837 353 FLGALSACGHAGLVDKGREIFESMERDYSM-KP-KMEHYACMVDLLGRAGSLEQALKFVL 410 (499)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~~~~~~a~~~~~ 410 (499)
|...|-.+....++..|.+.++.--+-.++ .+ +..+...|+.+| ..|+.+++.+++.
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 444444555556666666666653221122 12 455556666655 4466666555543
No 263
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=94.25 E-value=2.8 Score=35.08 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=16.6
Q ss_pred chhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 454 GAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
.+|..|+..|...|+.++|..+|+-.+..+
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaiann 267 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence 455555555556666666655555544443
No 264
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.21 E-value=3.4 Score=35.76 Aligned_cols=157 Identities=13% Similarity=0.113 Sum_probs=97.0
Q ss_pred HHhcCChHHHHHHHHhcCCC------ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHc---cc-
Q 010837 294 YAKCGKIDDARRVFDHMQQK------NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACG---HA- 363 (499)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~---~~- 363 (499)
-.+.|++++|.+.|+.+... ...+.-.++-++.+.++++.|+..+++....-..-....|...|.+++ ..
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~ 123 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQID 123 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCC
Confidence 45678888888888888753 223445566677788888888888888766532222223333333332 11
Q ss_pred ---C---cHHHHHHHHHHchHhcCCC---CChhH------------HHHHHHHHHhcCCHHHHHHHHHhCCCC-----CC
Q 010837 364 ---G---LVDKGREIFESMERDYSMK---PKMEH------------YACMVDLLGRAGSLEQALKFVLEMPEK-----PN 417 (499)
Q Consensus 364 ---~---~~~~a~~~~~~~~~~~~~~---p~~~~------------~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~ 417 (499)
. ....|..-|+.+..++.-. ||... =-.+.+-|.+.|.+..|..-++++.+. -.
T Consensus 124 ~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~ 203 (254)
T COG4105 124 DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAV 203 (254)
T ss_pred ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccch
Confidence 1 2345555566666443211 12111 123445688999999999999998873 22
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 010837 418 SDVWAALLSSCRLHDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 418 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (499)
...+-.+..+|...|-.++|...-+-+...-|+
T Consensus 204 ~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~ 236 (254)
T COG4105 204 REALARLEEAYYALGLTDEAKKTAKVLGANYPD 236 (254)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCC
Confidence 356777888999999999998776555444443
No 265
>PRK11619 lytic murein transglycosylase; Provisional
Probab=94.14 E-value=7.5 Score=39.56 Aligned_cols=93 Identities=8% Similarity=-0.192 Sum_probs=56.1
Q ss_pred HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc---CCCCCCchhHHHHHHHHhcCChH
Q 010837 394 DLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKL---NANDRPGAYVALSNTLAAAGKWD 470 (499)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~ 470 (499)
..+...|+...|...+..+....+......+.....+.|..+.++......... .... +..|...+..+.+.-.++
T Consensus 415 ~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rf-p~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 415 RELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERF-PLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhC-CcchHHHHHHHHHHcCCC
Confidence 445667888888887777666556566666666667778888777666543321 1111 334666666666665666
Q ss_pred HHHHHHHHHHhCCCccC
Q 010837 471 SVTELREKMKLRGVLKD 487 (499)
Q Consensus 471 ~A~~~~~~~~~~~~~~~ 487 (499)
.+.-.---..+.++.|+
T Consensus 494 ~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 494 QSYAMAIARQESAWNPK 510 (644)
T ss_pred HHHHHHHHHHhcCCCCC
Confidence 55543333346666665
No 266
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.14 E-value=0.31 Score=42.90 Aligned_cols=73 Identities=12% Similarity=0.152 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHh-----cCCCCCCchhHHH
Q 010837 387 EHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFK-----LNANDRPGAYVAL 459 (499)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 459 (499)
.++..++..+...|+++.+.+.+++... +-+...|..++.+|.+.|+...|+..|+++.+ .|++|.+.+...+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4566677777777777777777777665 34666777777777777777777777776654 4555533333333
No 267
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.11 E-value=0.73 Score=41.52 Aligned_cols=193 Identities=13% Similarity=0.103 Sum_probs=101.6
Q ss_pred hHHHHHHHHHhcCChHHHHHHHH-------hcCCC--ChhHHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCC---CHHH
Q 010837 286 LGSALVDMYAKCGKIDDARRVFD-------HMQQK--NVFTWTSMIDGYGKNGNPNQALELFCMMQEC-CVQP---NYVT 352 (499)
Q Consensus 286 ~~~~l~~~~~~~g~~~~a~~~~~-------~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p---~~~~ 352 (499)
++..+..+..+.|.+++++..-- +..+. -...|..+..++-+.-++.+++.+-+.-... |..| -...
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 44445556666666666543211 11111 1123444445554444455555443332221 2222 1123
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHchHhcCC--CC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-----C-CC-----
Q 010837 353 FLGALSACGHAGLVDKGREIFESMERDYSM--KP--KMEHYACMVDLLGRAGSLEQALKFVLEMPE-----K-PN----- 417 (499)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~-~~----- 417 (499)
..++..++...+.++++.+.|+...+-..- .| ...+|..|...|.+..++++|.-+..+..+ . .|
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 334556666777777777777766622111 11 234677788888888888877766555433 0 11
Q ss_pred -HHHHHHHHHHHhhcCCHHHHHHHHHHHHhc----CCCC-CCchhHHHHHHHHhcCChHHHHHHHHH
Q 010837 418 -SDVWAALLSSCRLHDDVEMANIAANEIFKL----NAND-RPGAYVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 418 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
......+.-++...|..-.|.+..++..+. |-.+ -......+...|...|+.+.|..-++.
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~ 271 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ 271 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence 112333445566777777777777766553 3222 022344677778888887777666654
No 268
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.02 E-value=2.4 Score=34.85 Aligned_cols=89 Identities=15% Similarity=-0.012 Sum_probs=47.5
Q ss_pred HHHcccCcHHHHHHHHHHchHhcCCCCCh----hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCHHHHHHHHHHHhhcC
Q 010837 358 SACGHAGLVDKGREIFESMERDYSMKPKM----EHYACMVDLLGRAGSLEQALKFVLEMPEK-PNSDVWAALLSSCRLHD 432 (499)
Q Consensus 358 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~l~~~~~~~~ 432 (499)
..+...|++++|...++... +.+.|. ..--.|.+.....|.+|+|+.+++....+ -.......-.+.+...|
T Consensus 97 k~~ve~~~~d~A~aqL~~~l---~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg 173 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQAL---AQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHhhccHHHHHHHHHHHH---ccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcC
Confidence 44556666666666666555 111121 11223344455666666666666665542 12222333445566666
Q ss_pred CHHHHHHHHHHHHhcCC
Q 010837 433 DVEMANIAANEIFKLNA 449 (499)
Q Consensus 433 ~~~~a~~~~~~~~~~~~ 449 (499)
+-++|+.-|++..+.+.
T Consensus 174 ~k~~Ar~ay~kAl~~~~ 190 (207)
T COG2976 174 DKQEARAAYEKALESDA 190 (207)
T ss_pred chHHHHHHHHHHHHccC
Confidence 66666666666666553
No 269
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.99 E-value=2.4 Score=33.33 Aligned_cols=125 Identities=12% Similarity=0.070 Sum_probs=62.2
Q ss_pred HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHh
Q 010837 319 TSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGR 398 (499)
Q Consensus 319 ~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 398 (499)
..++..+...+.......+++.+...+ ..+...++.++..|++.+ ..+....++. ..+.......+..+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHH
Confidence 345555555666666666666666654 345556666666666542 2333333331 0111222335555556
Q ss_pred cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc-CCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH
Q 010837 399 AGSLEQALKFVLEMPEKPNSDVWAALLSSCRLH-DDVEMANIAANEIFKLNANDRPGAYVALSNTLA 464 (499)
Q Consensus 399 ~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 464 (499)
.+.++++.-++.++.. +...+..+... ++.+.|.+++++. . ++..|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~~-----~-~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVKQ-----N-NPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHhC-----C-CHHHHHHHHHHHH
Confidence 6666666666666543 11122222222 5666666655541 1 2445555555544
No 270
>PRK11906 transcriptional regulator; Provisional
Probab=93.94 E-value=3.6 Score=38.97 Aligned_cols=140 Identities=13% Similarity=0.053 Sum_probs=95.8
Q ss_pred ChHHHHHHHHhcC---CCC---hhHHHHHHHHHHh---------CCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHccc
Q 010837 299 KIDDARRVFDHMQ---QKN---VFTWTSMIDGYGK---------NGNPNQALELFCMMQECCVQPNYVTFLGALSACGHA 363 (499)
Q Consensus 299 ~~~~a~~~~~~~~---~~~---~~~~~~l~~~~~~---------~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 363 (499)
..+.|..+|.+.. +-| ...|..+..++.. ..+..+|.++-++..+.+ +.|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4567888999887 434 4455555444332 223556777777777765 56788887887777888
Q ss_pred CcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCH---HHHHHHHHHHhhcCCHHHHH
Q 010837 364 GLVDKGREIFESMERDYSMKPK-MEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNS---DVWAALLSSCRLHDDVEMAN 438 (499)
Q Consensus 364 ~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~---~~~~~l~~~~~~~~~~~~a~ 438 (499)
++.+.|...|++.. .+.|| ...|........-.|+.++|.+.+++... .|.. ......+..|+.. ..+.|+
T Consensus 352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhH
Confidence 88999999999998 66784 44555555556678999999999999665 4543 3344445566554 467777
Q ss_pred HHHHH
Q 010837 439 IAANE 443 (499)
Q Consensus 439 ~~~~~ 443 (499)
.++-+
T Consensus 428 ~~~~~ 432 (458)
T PRK11906 428 KLYYK 432 (458)
T ss_pred HHHhh
Confidence 77654
No 271
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=93.86 E-value=0.045 Score=43.51 Aligned_cols=88 Identities=16% Similarity=0.161 Sum_probs=68.8
Q ss_pred HHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChh
Q 010837 49 PSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVE 128 (499)
Q Consensus 49 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 128 (499)
..+++.+.+.+.+.....+++.+...+...+...++.++..|++.++.++...+++.... .-...++..|-+.|.++
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 346777888899999999999999887677899999999999999999999999885433 33345777778888888
Q ss_pred hHHHHHHHHHH
Q 010837 129 ESLSLVRKLVS 139 (499)
Q Consensus 129 ~a~~~~~~m~~ 139 (499)
++.-++.++-.
T Consensus 88 ~a~~Ly~~~~~ 98 (143)
T PF00637_consen 88 EAVYLYSKLGN 98 (143)
T ss_dssp HHHHHHHCCTT
T ss_pred HHHHHHHHccc
Confidence 88888877543
No 272
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=93.79 E-value=7.1 Score=38.07 Aligned_cols=199 Identities=17% Similarity=0.167 Sum_probs=123.0
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCC--CCCHHHHHHHH
Q 010837 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQK---NVFTWTSMIDGYGKNGNPNQALELFCMMQECCV--QPNYVTFLGAL 357 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~ll 357 (499)
+..+|..-++.-.+.|+.+.+.-+|++..-| -...|--.+.-....|+.+-|..++....+--+ .|....+.+.+
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 3456777777788889999999999887754 223444444444455888888887776654322 33333333333
Q ss_pred HHHcccCcHHHHHHHHHHchHhcCCCCChh-HHHHHHHHHHhcCCHHHHH---HHHHhCCC-CCCHHHHHHHHH-----H
Q 010837 358 SACGHAGLVDKGREIFESMERDYSMKPKME-HYACMVDLLGRAGSLEQAL---KFVLEMPE-KPNSDVWAALLS-----S 427 (499)
Q Consensus 358 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~---~~~~~~~~-~~~~~~~~~l~~-----~ 427 (499)
+...|+++.|..+++.+.++. |+.. .-..-+....+.|..+.+. .++..... +-+..+...+.- .
T Consensus 376 --~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 376 --EESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLR 450 (577)
T ss_pred --HHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHH
Confidence 345689999999999998542 5432 2223344456778888877 55555444 223222222222 2
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCC---hHHHHHHHHHHHhCCCccC
Q 010837 428 CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGK---WDSVTELREKMKLRGVLKD 487 (499)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~ 487 (499)
+.-.++.+.|..++.++.+..+.. ...|..++......+. .+--.-++..+....+.++
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~~-k~~~~~~~~~~~~~~~~~e~d~~e~~~~~~~~~~~~~~ 512 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPDC-KVLYLELIRFELIQPSGREYDLLEPIDWKELKMLIDFD 512 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCcc-HHHHHHHHHHHHhCCcchhhhhhhhHHHHHHhhhcccc
Confidence 345678999999999999888877 7778888887776653 2223334444444444444
No 273
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.65 E-value=5.8 Score=40.30 Aligned_cols=142 Identities=13% Similarity=0.022 Sum_probs=71.2
Q ss_pred HHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHH
Q 010837 291 VDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR 370 (499)
Q Consensus 291 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 370 (499)
.+.+.+.|++++|...|-+-..--.. ..+|.-|....+..+-..+++.+.+.|.. +...-..|+.+|.+.++.++-.
T Consensus 375 gd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 375 GDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred HHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence 33445566676666666554321111 12334444555555556666666666643 3333345666777777766665
Q ss_pred HHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010837 371 EIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444 (499)
Q Consensus 371 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 444 (499)
++.+... +....-| ....+..+.+.+-.++|..+-.+... +......++ -..+++++|++.++.+
T Consensus 452 efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~--he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 452 EFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATKFKK--HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 5554433 2111112 23344555555666666655554443 223333332 3346777777666543
No 274
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.52 E-value=3.5 Score=38.52 Aligned_cols=70 Identities=17% Similarity=0.292 Sum_probs=57.3
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC---CCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 010837 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND---RPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 416 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 485 (499)
....+|..++..+.+.|.++.|...+.++.+.+... .+......+..+...|+.++|...++...+..+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 455688999999999999999999999998865332 3577778889999999999999999988874333
No 275
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.41 E-value=0.29 Score=27.25 Aligned_cols=30 Identities=17% Similarity=0.044 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCC
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFKLNA 449 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (499)
+|..+...+...|++++|+..++++++..|
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 455566666666666666666666666554
No 276
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=93.17 E-value=1 Score=37.07 Aligned_cols=60 Identities=15% Similarity=0.108 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhCCCC-----CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010837 387 EHYACMVDLLGRAGSLEQALKFVLEMPEK-----PNSDVWAALLSSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (499)
..+..+.+.|.+.|+.+.|.+.|.++.+. .-...+..+++.....+++..+...+.++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 34556666666666666666666666552 1233455566666666666666666655554
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.10 E-value=0.22 Score=28.30 Aligned_cols=26 Identities=19% Similarity=0.266 Sum_probs=18.9
Q ss_pred hhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 455 AYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
+|..|+.+|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36677888888888888888887744
No 278
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=92.99 E-value=0.38 Score=26.65 Aligned_cols=31 Identities=19% Similarity=0.163 Sum_probs=17.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFKLNAN 450 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 450 (499)
.|..+...+...|++++|++.++++++..|.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 3445555666666666666666666655543
No 279
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.92 E-value=6.8 Score=35.22 Aligned_cols=59 Identities=12% Similarity=0.095 Sum_probs=32.9
Q ss_pred hHHHHHHHHHhcCChH---HHHHHHHhcCC--CC-hhHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 010837 286 LGSALVDMYAKCGKID---DARRVFDHMQQ--KN-VFTWTSMIDGYGKNGNPNQALELFCMMQEC 344 (499)
Q Consensus 286 ~~~~l~~~~~~~g~~~---~a~~~~~~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (499)
++..++.+|...+..+ +|.++++.+.. ++ +..+-.-+..+.+.++.+.+.+.+.+|...
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 4455666666666544 34444444432 22 344444555555567777777777777664
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.89 E-value=0.12 Score=29.37 Aligned_cols=27 Identities=19% Similarity=0.027 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (499)
+|..|...|.+.|++++|++++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466778888888888888888888554
No 281
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.89 E-value=0.38 Score=39.40 Aligned_cols=103 Identities=12% Similarity=0.065 Sum_probs=71.5
Q ss_pred HHHcccCcHHHHHHHHHHchHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHhhcC
Q 010837 358 SACGHAGLVDKGREIFESMERDYSMKPK---MEHYACMVDLLGRAGSLEQALKFVLEMPE-KPN-SDVWAALLSSCRLHD 432 (499)
Q Consensus 358 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l~~~~~~~~ 432 (499)
.-+.+.|++++|..-|.+......-.+. ...|..-..++.+.+.++.|++-..+..+ .|+ ......-..+|-+..
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKME 182 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhh
Confidence 3466889999999999998843221111 22455555677889999999988888776 332 233344455788888
Q ss_pred CHHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 010837 433 DVEMANIAANEIFKLNANDRPGAYVALSN 461 (499)
Q Consensus 433 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 461 (499)
.+++|++-|+++.+..|.. ...-...++
T Consensus 183 k~eealeDyKki~E~dPs~-~ear~~i~r 210 (271)
T KOG4234|consen 183 KYEEALEDYKKILESDPSR-REAREAIAR 210 (271)
T ss_pred hHHHHHHHHHHHHHhCcch-HHHHHHHHh
Confidence 9999999999999998877 344444443
No 282
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.46 E-value=4 Score=32.89 Aligned_cols=136 Identities=16% Similarity=0.125 Sum_probs=89.1
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChh-HHHH
Q 010837 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV-TFLGALSACGHAGLVDKGREIFESMERDYSMKPKME-HYAC 391 (499)
Q Consensus 314 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~ 391 (499)
....|..-+. +++.|..++|+.-|.++.+.|...=+. .-..........|+...|...|+++-.... .|-.. -...
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~-~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS-IPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC-CcchhhHHHH
Confidence 3344544444 467788999999999999887543222 122233456788999999999999984422 23221 1111
Q ss_pred H--HHHHHhcCCHHHHHHHHHhCCCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 392 M--VDLLGRAGSLEQALKFVLEMPEKPN---SDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 392 l--~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
| .-.+...|.+++.....+.+....+ ...-..|.-+-.+.|++.+|.+.|..+..-...|
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 2 2235678999998888887765322 2344567777789999999999999887743333
No 283
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.43 E-value=5.4 Score=32.92 Aligned_cols=90 Identities=13% Similarity=0.003 Sum_probs=66.0
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH-----HHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhc
Q 010837 392 MVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA-----LLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466 (499)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 466 (499)
+...+..++++++|..-++.....|....+.. |.+...+.|.+|+|+..++...+.+..+ .....-+.++...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHc
Confidence 44567788888888888887776554444443 4455678888888888888776655544 4556677888888
Q ss_pred CChHHHHHHHHHHHhCC
Q 010837 467 GKWDSVTELREKMKLRG 483 (499)
Q Consensus 467 g~~~~A~~~~~~~~~~~ 483 (499)
|+-++|..-|+.....+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 88888888888887776
No 284
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=92.27 E-value=8.5 Score=34.81 Aligned_cols=130 Identities=15% Similarity=0.218 Sum_probs=76.7
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcc--cC----cHHHHHHHHHHchHhcCCCC--ChhHHHHHHHHHHhcCCH
Q 010837 331 PNQALELFCMMQECCVQPNYVTFLGALSACGH--AG----LVDKGREIFESMERDYSMKP--KMEHYACMVDLLGRAGSL 402 (499)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~ 402 (499)
+++.+.+++.|.+.|+.-+..+|.+....... .. ...+|..+|+.|++++.+-. +-.++..|+.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45567788999999998888877664433322 22 35678999999997655432 33344444432 44443
Q ss_pred H----HHHHHHHhCCC----CCCH-HHHHHHHHHHhhcCC--HHHHHHHHHHHHhcCCCCCCchhHHHHHH
Q 010837 403 E----QALKFVLEMPE----KPNS-DVWAALLSSCRLHDD--VEMANIAANEIFKLNANDRPGAYVALSNT 462 (499)
Q Consensus 403 ~----~a~~~~~~~~~----~~~~-~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 462 (499)
+ .+...|+.+.. +.|. .....++..+-...+ ..++.++++.+.+.+.+.....|..++-.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL 226 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL 226 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence 3 44555555444 3333 344444433322222 45788889999999998844444444443
No 285
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=91.99 E-value=4.5 Score=30.98 Aligned_cols=136 Identities=20% Similarity=0.140 Sum_probs=72.7
Q ss_pred HHhCCCHHHHHHHHHhcCC-CChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCchhH---HHHHHHHHhcCChHH
Q 010837 227 FMSQGFVEDAEEIFRKTVE-KDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVKLG---SALVDMYAKCGKIDD 302 (499)
Q Consensus 227 ~~~~g~~~~a~~~~~~~~~-~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~ 302 (499)
+.-.|..++..++..+... .+..-+|.+|-.... .-...-+++.+..-|--.|.... ..++.+|++.|..
T Consensus 12 ~ildG~V~qGveii~k~v~Ssni~E~NWvICNiiD----aa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~-- 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIID----AADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKL-- 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHH----H--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCcCCccccceeeeecch----hhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcch--
Confidence 3445666666666666552 334444444433321 11334455555555543443321 2334444444332
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCC
Q 010837 303 ARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSM 382 (499)
Q Consensus 303 a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 382 (499)
......-+..+...|+-++-.+++.++.+. -++++.....+..||.+.|+..++.+++.++-+ .|+
T Consensus 86 ------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe-kG~ 151 (161)
T PF09205_consen 86 ------------SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE-KGL 151 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH-TT-
T ss_pred ------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH-hch
Confidence 233445567778888888888888888753 477888888888899999999999888888873 365
No 286
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.96 E-value=5.7 Score=32.15 Aligned_cols=120 Identities=18% Similarity=0.073 Sum_probs=68.2
Q ss_pred HHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHH
Q 010837 131 LSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFD 210 (499)
Q Consensus 131 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 210 (499)
.+.++.+.+.|+.|+...+..++..+ ...+... .+..++..++-+|.......+-.+.. ....+.++--
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lL-----i~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~l 82 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLL-----IRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGL 82 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHH-----HHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHH
Confidence 34555556667788888888888777 5555433 33444455555555544443322222 2333334333
Q ss_pred hccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcC
Q 010837 211 MMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSIS 261 (499)
Q Consensus 211 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~ 261 (499)
.|..+=...+..++..+...|++-+|+++.+....-+......++.+....
T Consensus 83 DMLkRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~ 133 (167)
T PF07035_consen 83 DMLKRLGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANS 133 (167)
T ss_pred HHHHHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHc
Confidence 333332234566777888888888888888776544444445555555444
No 287
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=91.87 E-value=3.5 Score=29.66 Aligned_cols=89 Identities=18% Similarity=0.134 Sum_probs=65.2
Q ss_pred CChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHHHH
Q 010837 59 DTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLV 138 (499)
Q Consensus 59 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 138 (499)
..-++|..|-+.+...+- ....+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++..-+.+|.
T Consensus 19 HcHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred hHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 355788888888877662 234444445566788999999999999999999999987765 45677777777777787
Q ss_pred HcCCCCChhhHHH
Q 010837 139 SSGERPDGYTFSM 151 (499)
Q Consensus 139 ~~g~~p~~~~~~~ 151 (499)
.+| .|...+|..
T Consensus 96 ~sg-~p~lq~Faa 107 (115)
T TIGR02508 96 ASG-DPRLQTFVA 107 (115)
T ss_pred hCC-CHHHHHHHH
Confidence 776 555555544
No 288
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=91.82 E-value=1.1 Score=39.57 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=41.8
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
.++..++..+...|+.+.+...++++. ...| +...|..+|.+|.+.|+...|+..|+.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li---~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLI---ELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHH---hcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345556666667777777777777776 3455 666777777777777777777777766554
No 289
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=91.62 E-value=8.5 Score=33.47 Aligned_cols=239 Identities=15% Similarity=0.174 Sum_probs=129.9
Q ss_pred hCCChhHHHHHHHhccCC-------ChHhHHHHHHHHHhCCCHHHHHHHHHhcC---------CCChhhHHHHHHHHhcC
Q 010837 198 KGGKTSYARIVFDMMLEK-------NVICSTSMISGFMSQGFVEDAEEIFRKTV---------EKDIVVYNAMIEGYSIS 261 (499)
Q Consensus 198 ~~g~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---------~~~~~~~~~ll~~~~~~ 261 (499)
+..++++|+.-|+++.+- +..+...++....+.|++++..+.|.++. .-+..+.|.++.-.+.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 344677777777776442 23455667777888888888888777765 12334555665555443
Q ss_pred hhhHHHHHHHHHHHHHc----c-cCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCC---------------ChhHHHHH
Q 010837 262 IETARKALEVHCQLIKN----V-FFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQK---------------NVFTWTSM 321 (499)
Q Consensus 262 ~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~l 321 (499)
...+.-..+++.-.+. . -..-..|-..|...|...|.+.+..+++.++.+. -...|..=
T Consensus 119 -~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlE 197 (440)
T KOG1464|consen 119 -KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALE 197 (440)
T ss_pred -hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhH
Confidence 3333333333332221 1 1111223456778888888888888888877531 12456667
Q ss_pred HHHHHhCCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHH-----cccCcHHHHHHHHHHchHhcCC--CCC---hhHHH
Q 010837 322 IDGYGKNGNPNQALELFCMMQEC-CVQPNYVTFLGALSAC-----GHAGLVDKGREIFESMERDYSM--KPK---MEHYA 390 (499)
Q Consensus 322 ~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~--~p~---~~~~~ 390 (499)
|+.|....+-.+-..+|++...- ..-|.+.... .|+-| .+.|.+++|-.-|=++.+.+.- .|. .--|.
T Consensus 198 IQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYL 276 (440)
T KOG1464|consen 198 IQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYL 276 (440)
T ss_pred hhhhhhhcccHHHHHHHHHHHHhhccCCchHHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHH
Confidence 77787777767777777765432 2344444333 33333 4667888775433333322211 232 22355
Q ss_pred HHHHHHHhcCC----HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 010837 391 CMVDLLGRAGS----LEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANE 443 (499)
Q Consensus 391 ~l~~~~~~~~~----~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 443 (499)
.|..++.+.|- ..+| +-.+..|.....+.|+.+|.. ++..+.++++..
T Consensus 277 VLANMLmkS~iNPFDsQEA----KPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 277 VLANMLMKSGINPFDSQEA----KPYKNDPEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHHHHcCCCCCccccc----CCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 56666655441 1111 001113566677888888744 455555555443
No 290
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.54 E-value=5.3 Score=32.96 Aligned_cols=60 Identities=20% Similarity=0.305 Sum_probs=30.3
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 318 WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV--TFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 318 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
+..+...|++.|+.++|.+.|.++.+....+... .+-.++......+++..+...+.++.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4445555555555555555555555543333322 23344445555555555555554444
No 291
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=91.34 E-value=23 Score=37.87 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=21.3
Q ss_pred CCchhHHHHHHHHHHhCC--ChhHHHHHHHhcc
Q 010837 183 KADDVLYTALVDSYVKGG--KTSYARIVFDMML 213 (499)
Q Consensus 183 ~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~ 213 (499)
.|+ .....+|..|.+.+ .+++|+....+..
T Consensus 788 ~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~ 819 (1265)
T KOG1920|consen 788 APD-KFNLFILTSYVKSNPPEIEEALQKIKELQ 819 (1265)
T ss_pred Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 454 45567888888887 6777777776665
No 292
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.32 E-value=5.5 Score=36.26 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=27.7
Q ss_pred HhCCChhHHHHHHHhccCC------ChHhHHHHHHHHHhCCCHHHHHHH
Q 010837 197 VKGGKTSYARIVFDMMLEK------NVICSTSMISGFMSQGFVEDAEEI 239 (499)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~ 239 (499)
....+.++|+..+.....+ -..++..+..+.++.|.+++++..
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~ 65 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKF 65 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHH
Confidence 3455666666666665443 134667777778888888877654
No 293
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.97 E-value=20 Score=36.64 Aligned_cols=213 Identities=11% Similarity=0.013 Sum_probs=125.6
Q ss_pred CCcchHHHHHHhhhCCCChhhHHHHHHHHH----HhCC------------CCChHHHHHHHHHHHcCCChhHHHHHhccC
Q 010837 43 LTATSLPSALQHYINSDTPFYGLKIHAHIT----KTGV------------KPNTNISIKLLILHLKCGALKYAGQMFDEL 106 (499)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 106 (499)
.+....+.++.++...+.+-.-.-+++.+. ..+. .........-+..+.+...++-|..+-+.-
T Consensus 281 ~s~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~ 360 (933)
T KOG2114|consen 281 LSNSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQ 360 (933)
T ss_pred cCccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhc
Confidence 345556777777777776655444444433 3331 122334455677788888888888887764
Q ss_pred CCCChHH----HHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCC
Q 010837 107 PQRTLSA----YNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182 (499)
Q Consensus 107 ~~~~~~~----~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 182 (499)
.- +... .....+.+.+.|++++|..-|-+-... +.|. .++.-+ ........-..+++.+.+.|+
T Consensus 361 ~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kf-----Ldaq~IknLt~YLe~L~~~gl 428 (933)
T KOG2114|consen 361 HL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKF-----LDAQRIKNLTSYLEALHKKGL 428 (933)
T ss_pred CC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHh-----cCHHHHHHHHHHHHHHHHccc
Confidence 43 2222 333344556789999998888776543 2332 234444 444445555566777777785
Q ss_pred CCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChH--hHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhc
Q 010837 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVI--CSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSI 260 (499)
Q Consensus 183 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~ 260 (499)
. +...-..|+.+|.+.++.++-.++.+... .+.. -....+..+.+.+-.++|.-+-.+... .......++...
T Consensus 429 a-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~vl~ille~~-- 503 (933)
T KOG2114|consen 429 A-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWVLDILLEDL-- 503 (933)
T ss_pred c-cchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHHHHHHHHHh--
Confidence 3 44456678999999999999888888776 3222 234455555566666666555544433 333333444333
Q ss_pred ChhhHHHHHHHHHH
Q 010837 261 SIETARKALEVHCQ 274 (499)
Q Consensus 261 ~~~~~~~a~~~~~~ 274 (499)
+++++|.+++..
T Consensus 504 --~ny~eAl~yi~s 515 (933)
T KOG2114|consen 504 --HNYEEALRYISS 515 (933)
T ss_pred --cCHHHHHHHHhc
Confidence 555566655543
No 294
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.76 E-value=9.8 Score=33.13 Aligned_cols=177 Identities=10% Similarity=0.093 Sum_probs=93.6
Q ss_pred CChHHHHHHHHhcCC----CCh---hHHHHHHHHHHhCCChhHHHHHHHHHHHc---CC--CCCHHHHHHHHHHHcccCc
Q 010837 298 GKIDDARRVFDHMQQ----KNV---FTWTSMIDGYGKNGNPNQALELFCMMQEC---CV--QPNYVTFLGALSACGHAGL 365 (499)
Q Consensus 298 g~~~~a~~~~~~~~~----~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~---~~--~p~~~~~~~ll~~~~~~~~ 365 (499)
...++|+.-|++..+ ... .....++....+.|++++.++.|.+|... .+ .-+..+.+.+++-...+.+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 355666666665543 111 23344566677777777777777776432 11 1234455666665555555
Q ss_pred HHHHHHHHHHchHhc----CCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------C-------CCHHHHHHHHHH
Q 010837 366 VDKGREIFESMERDY----SMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE-------K-------PNSDVWAALLSS 427 (499)
Q Consensus 366 ~~~a~~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~-------~~~~~~~~l~~~ 427 (499)
.+.-..+|+.-.... +-..--.+-..|...|...+.+.+..++++++.. . .-...|..=|..
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 544444443322111 1111122335566777777777777777766543 0 113456666677
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHH-----HhcCChHHHHH
Q 010837 428 CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTL-----AAAGKWDSVTE 474 (499)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~ 474 (499)
|...++-+....++++.+.............+++-| .+.|+|++|..
T Consensus 201 YT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhT 252 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHT 252 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHh
Confidence 777777777777777766533221122333333333 35677777653
No 295
>PRK09687 putative lyase; Provisional
Probab=90.62 E-value=12 Score=33.53 Aligned_cols=60 Identities=12% Similarity=0.116 Sum_probs=28.3
Q ss_pred CchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCH----HHHHHHHHhc
Q 010837 184 ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFV----EDAEEIFRKT 243 (499)
Q Consensus 184 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~a~~~~~~~ 243 (499)
+|..+....+..+...|..+-...+...+...|...-...+.++.+.|+. +++...+..+
T Consensus 35 ~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 35 HNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 44444444555555555433333333333334555555555555555542 3455555544
No 296
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.50 E-value=3.1 Score=40.44 Aligned_cols=105 Identities=14% Similarity=0.118 Sum_probs=74.7
Q ss_pred HHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHH
Q 010837 292 DMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGRE 371 (499)
Q Consensus 292 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 371 (499)
....+.|+++.|.++..+. .+..-|..|.++..+.|++..|.+.|.+... |..|+-.+...|+-+....
T Consensus 645 elal~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhhhhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 3456778899888876654 4667899999999999999999999887665 4456666777777665555
Q ss_pred HHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 372 IFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 372 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
+-.... +.|. .|.-..+|...|+++++.+++.+-..
T Consensus 714 la~~~~-~~g~------~N~AF~~~~l~g~~~~C~~lLi~t~r 749 (794)
T KOG0276|consen 714 LASLAK-KQGK------NNLAFLAYFLSGDYEECLELLISTQR 749 (794)
T ss_pred HHHHHH-hhcc------cchHHHHHHHcCCHHHHHHHHHhcCc
Confidence 554444 3232 23344567788999999998876544
No 297
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.61 E-value=2.5 Score=30.56 Aligned_cols=60 Identities=17% Similarity=0.176 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHH
Q 010837 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394 (499)
Q Consensus 333 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 394 (499)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++|+-++.+.+-.- ..|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~--~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKK--EIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-T--THHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChH--HHHHHHHH
Confidence 4556666777777888888888899999999999999999988886655432 26666654
No 298
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.47 E-value=16 Score=33.06 Aligned_cols=48 Identities=10% Similarity=-0.023 Sum_probs=20.6
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHH
Q 010837 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFES 375 (499)
Q Consensus 327 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 375 (499)
..|-+++|++.-++..+-+ +.|..........+...|+..++.+++.+
T Consensus 187 E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 187 ECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 3444444444444444322 22333334444444444444444444433
No 299
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.44 E-value=0.77 Score=41.02 Aligned_cols=110 Identities=10% Similarity=0.035 Sum_probs=78.4
Q ss_pred HHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCH
Q 010837 358 SACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDV 434 (499)
Q Consensus 358 ~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~ 434 (499)
.-|.++|.+++|+..|.... .+.| +.+++..-..+|.+..++..|..-...... +.-...|..-+.+-...|..
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 56889999999999999887 6677 888888888899999998887776666554 22234555555555666788
Q ss_pred HHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHH
Q 010837 435 EMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTEL 475 (499)
Q Consensus 435 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 475 (499)
.+|.+-++..++..|.. +.|-..+.+.....++.-+
T Consensus 182 ~EAKkD~E~vL~LEP~~-----~ELkK~~a~i~Sl~E~~I~ 217 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKN-----IELKKSLARINSLRERKIA 217 (536)
T ss_pred HHHHHhHHHHHhhCccc-----HHHHHHHHHhcchHhhhHH
Confidence 88888888888877764 4455555555555554433
No 300
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=89.27 E-value=13 Score=31.67 Aligned_cols=183 Identities=20% Similarity=0.137 Sum_probs=132.1
Q ss_pred CChHHHHHHHHhcCCC-----ChhHHHHHHHHHHhCCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHcccCcHHHHHH
Q 010837 298 GKIDDARRVFDHMQQK-----NVFTWTSMIDGYGKNGNPNQALELFCMMQEC-CVQPNYVTFLGALSACGHAGLVDKGRE 371 (499)
Q Consensus 298 g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~ 371 (499)
+....+...+...... ....+......+...+++..+...+...... ........+......+...++...+..
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 4445555555444432 2466777788888999999999988887752 234555667777777778888999999
Q ss_pred HHHHchHhcCCCCCh-hHHHHHHH-HHHhcCCHHHHHHHHHhCCC-CC----CHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010837 372 IFESMERDYSMKPKM-EHYACMVD-LLGRAGSLEQALKFVLEMPE-KP----NSDVWAALLSSCRLHDDVEMANIAANEI 444 (499)
Q Consensus 372 ~~~~~~~~~~~~p~~-~~~~~l~~-~~~~~~~~~~a~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 444 (499)
.+..... ..++. ........ .+...|+++.|...+.+... .| ....+......+...++.+.+...+...
T Consensus 117 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 117 LLEKALA---LDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHc---CCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 9998872 22322 22333333 78899999999999998754 22 2334444445567789999999999999
Q ss_pred HhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 445 FKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
....+......+..+...+...++++.|...+.......
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 232 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD 232 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhC
Confidence 988877227889999999999999999999998877644
No 301
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.24 E-value=9 Score=30.13 Aligned_cols=48 Identities=13% Similarity=0.313 Sum_probs=24.5
Q ss_pred cCcHHHHHHHHHHchHhcCCCCC---hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 010837 363 AGLVDKGREIFESMERDYSMKPK---MEHYACMVDLLGRAGSLEQALKFVLEMPEK 415 (499)
Q Consensus 363 ~~~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 415 (499)
.++++++..+++.+. -+.|+ ..++.. ..+...|+|++|.++|++..+.
T Consensus 23 ~~d~~D~e~lLdALr---vLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALR---VLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHH---HhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhcc
Confidence 455666666665555 33442 222222 2244556666666666666653
No 302
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=89.22 E-value=30 Score=35.85 Aligned_cols=193 Identities=12% Similarity=0.068 Sum_probs=102.6
Q ss_pred HHhcCChHHHHHHHHhcCC----CCh-------hHHHHHHH-HHHhCCChhHHHHHHHHHHHcC----CCCCHHHHHHHH
Q 010837 294 YAKCGKIDDARRVFDHMQQ----KNV-------FTWTSMID-GYGKNGNPNQALELFCMMQECC----VQPNYVTFLGAL 357 (499)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~----~~~-------~~~~~l~~-~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~~~~ll 357 (499)
.....++++|..++.++.. ++. ..|+.+-. .....|++++|+++-+.....= ..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 3456788888888876542 221 23444432 2345688888888887766541 122344566666
Q ss_pred HHHcccCcHHHHHHHHHHchHhcCCCCChhH---HHHHH--HHHHhcCC--HHHHHHHHHhCCC-----C----CCHHHH
Q 010837 358 SACGHAGLVDKGREIFESMERDYSMKPKMEH---YACMV--DLLGRAGS--LEQALKFVLEMPE-----K----PNSDVW 421 (499)
Q Consensus 358 ~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~--~~~~~~~~--~~~a~~~~~~~~~-----~----~~~~~~ 421 (499)
.+..-.|++++|..+.+...+. .-.-+... +..+. ..+...|. +++....|..... + +-..+.
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 7777788899888877766532 11122222 22222 22445562 2223333332222 1 223445
Q ss_pred HHHHHHHhhc-CCHHHHHHHHHHHHhcCCCCCCc--hhHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 010837 422 AALLSSCRLH-DDVEMANIAANEIFKLNANDRPG--AYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487 (499)
Q Consensus 422 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 487 (499)
..++.++.+. +...++..-++-.....+.+-.. .+..|+..+...|+.++|...++++......+.
T Consensus 584 ~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~ 652 (894)
T COG2909 584 AQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ 652 (894)
T ss_pred HHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC
Confidence 5555555441 22222222233222233333111 223677788888999999988888877665554
No 303
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.94 E-value=7.5 Score=36.81 Aligned_cols=89 Identities=13% Similarity=0.150 Sum_probs=40.9
Q ss_pred cccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC--CCHHHHHHHHHHHhhcCCHHHHH
Q 010837 361 GHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEK--PNSDVWAALLSSCRLHDDVEMAN 438 (499)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~ 438 (499)
...|+++.+.+.+..... -+.....+..++++...+.|++++|..+-.-|... .+..............|-++++.
T Consensus 334 ~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~ 411 (831)
T PRK15180 334 SHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSY 411 (831)
T ss_pred HHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHH
Confidence 344555555555554431 12223334455555555555555555555544431 22222222222333444555555
Q ss_pred HHHHHHHhcCCCC
Q 010837 439 IAANEIFKLNAND 451 (499)
Q Consensus 439 ~~~~~~~~~~~~~ 451 (499)
-.|++....+++.
T Consensus 412 ~~wk~~~~~~~~~ 424 (831)
T PRK15180 412 HYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHhccCChh
Confidence 5555555544443
No 304
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=88.92 E-value=20 Score=33.43 Aligned_cols=65 Identities=15% Similarity=0.067 Sum_probs=42.7
Q ss_pred ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHHcccCcHHHHHHHHHHchH
Q 010837 314 NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQP---NYVTFLGALSACGHAGLVDKGREIFESMER 378 (499)
Q Consensus 314 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 378 (499)
...+|..+...+.+.|+++.|...+.++...+... .......-...+-..|+..+|...++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44567777788888888888888888877643211 223333344555566777888887777764
No 305
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.91 E-value=14 Score=36.14 Aligned_cols=70 Identities=17% Similarity=0.116 Sum_probs=33.3
Q ss_pred ccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 010837 362 HAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAA 441 (499)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 441 (499)
+.|+++.|.++..+.. +..-|..|.++....+++..|.+.|.+... |..|+-.+...|+-+....+-
T Consensus 649 ~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 649 KLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRARD------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhcc------hhhhhhhhhhcCChhHHHHHH
Confidence 4455555555543332 123355555655566666666655555443 333444444444444333333
Q ss_pred HHH
Q 010837 442 NEI 444 (499)
Q Consensus 442 ~~~ 444 (499)
...
T Consensus 716 ~~~ 718 (794)
T KOG0276|consen 716 SLA 718 (794)
T ss_pred HHH
Confidence 333
No 306
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=88.82 E-value=3.2 Score=29.70 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHH
Q 010837 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394 (499)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 394 (499)
.-++.+-++.+....+.|++....+.++||-+.+++..|.++++-++.+.+. +...|..+++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 3355666666666777888888888888888888888888888877755443 3345555543
No 307
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.32 E-value=25 Score=33.88 Aligned_cols=175 Identities=13% Similarity=0.110 Sum_probs=101.6
Q ss_pred CchhHHHHHHHHHhcCChHHHHHHHHhcCC--CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010837 283 DVKLGSALVDMYAKCGKIDDARRVFDHMQQ--KNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360 (499)
Q Consensus 283 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 360 (499)
|.....+++..+...-...-++.+..+|.. .+-..|..++++|..+ ..+.-..+|+++.+..+ .|.+.-..|..-|
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~~y 142 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELADKY 142 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHHHH
Confidence 444555666667666666666666666654 4556677777777777 44666777777777532 2333333444444
Q ss_pred cccCcHHHHHHHHHHchHhcCCCCC------hhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----CCHHHHHHHHHHHhh
Q 010837 361 GHAGLVDKGREIFESMERDYSMKPK------MEHYACMVDLLGRAGSLEQALKFVLEMPEK----PNSDVWAALLSSCRL 430 (499)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~~~~ 430 (499)
.+ ++.+.+..+|..+.. .+-|. ..+|..|... -..+.|....+..++..+ .-...+.-+-.-|..
T Consensus 143 Ek-ik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 143 EK-IKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HH-hchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 44 677777777777662 22231 1244444431 134555666655555442 223344445556667
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh
Q 010837 431 HDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465 (499)
Q Consensus 431 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (499)
..++++|++++..+++.+-.. ..+-..++..+..
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~-~~ar~~~i~~lRd 251 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKD-VWARKEIIENLRD 251 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchh-hhHHHHHHHHHHH
Confidence 777888888888777766655 5555555555443
No 308
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=88.10 E-value=4.6 Score=31.69 Aligned_cols=99 Identities=15% Similarity=0.136 Sum_probs=59.5
Q ss_pred ChhHHHHHHHHH---HhcCCHHHHHHHHHhCCC-CCC---HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhH
Q 010837 385 KMEHYACMVDLL---GRAGSLEQALKFVLEMPE-KPN---SDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYV 457 (499)
Q Consensus 385 ~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~-~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 457 (499)
+..+.+.|++.. ...++.+++..++..+.- +|+ ..++... .+...|++++|.++|++..+.++.. +..--
T Consensus 6 s~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~~~-p~~kA 82 (153)
T TIGR02561 6 SNRLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAGAP-PYGKA 82 (153)
T ss_pred cHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCCCc-hHHHH
Confidence 334555666554 357888999888887765 343 3444433 4678899999999999998877654 33333
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 010837 458 ALSNTLAAAGKWDSVTELREKMKLRGVLKD 487 (499)
Q Consensus 458 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 487 (499)
.+..++...|+. .=...-+.+.+.|-.++
T Consensus 83 L~A~CL~al~Dp-~Wr~~A~~~le~~~~~~ 111 (153)
T TIGR02561 83 LLALCLNAKGDA-EWHVHADEVLARDADAD 111 (153)
T ss_pred HHHHHHHhcCCh-HHHHHHHHHHHhCCCHh
Confidence 344444455543 22233344445554444
No 309
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.09 E-value=3 Score=37.45 Aligned_cols=79 Identities=19% Similarity=0.151 Sum_probs=54.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcC
Q 010837 322 IDGYGKNGNPNQALELFCMMQECCVQP-NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400 (499)
Q Consensus 322 ~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 400 (499)
..-|.+.|.+++|++.|..-.. +.| |.+++..-..+|.+.+.+..|+.--.... .+ -...+.+|.+.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Ai---aL------d~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAI---AL------DKLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHH---Hh------hHHHHHHHHHHH
Confidence 4568899999999999998776 456 88899888889999999888777665555 11 123455565554
Q ss_pred CHHHHHHHHHh
Q 010837 401 SLEQALKFVLE 411 (499)
Q Consensus 401 ~~~~a~~~~~~ 411 (499)
.-..++....+
T Consensus 173 ~AR~~Lg~~~E 183 (536)
T KOG4648|consen 173 QARESLGNNME 183 (536)
T ss_pred HHHHHHhhHHH
Confidence 44444433333
No 310
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=88.08 E-value=1.3 Score=24.39 Aligned_cols=30 Identities=20% Similarity=0.070 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCC
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFKLNA 449 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (499)
+|..+...|...|++++|.+.|++.++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 344455555555555555555555555443
No 311
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.04 E-value=13 Score=30.17 Aligned_cols=120 Identities=14% Similarity=0.149 Sum_probs=79.9
Q ss_pred HHhcCChHHHHHHHHhcCCCChhHHHHHH-----HHHHhCCChhHHHHHHHHHHHcCCCCCHH-HHHHH--HHHHcccCc
Q 010837 294 YAKCGKIDDARRVFDHMQQKNVFTWTSMI-----DGYGKNGNPNQALELFCMMQECCVQPNYV-TFLGA--LSACGHAGL 365 (499)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~-----~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l--l~~~~~~~~ 365 (499)
+++.+..++|+.-|..+.+.+.-.|-.|. ......|+...|...|.+.-.....|-.. -...| .-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 56778888888888888876655555443 34567888888999998887654344332 12222 223567788
Q ss_pred HHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 366 VDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 366 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
++......+-+..+ +-+.....-..|.-+-.+.|++.+|.++|..+..
T Consensus 148 y~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88877777766522 3222344456677777788999999998888765
No 312
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=87.96 E-value=1.3 Score=24.42 Aligned_cols=27 Identities=22% Similarity=0.327 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHH
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQE 343 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (499)
+|..+...|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555566666666666666665554
No 313
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=87.86 E-value=0.85 Score=23.56 Aligned_cols=23 Identities=35% Similarity=0.369 Sum_probs=14.5
Q ss_pred hhHHHHHHHHhcCChHHHHHHHH
Q 010837 455 AYVALSNTLAAAGKWDSVTELRE 477 (499)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~ 477 (499)
....+..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34556666666777776666654
No 314
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=87.82 E-value=0.98 Score=24.88 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=24.8
Q ss_pred chhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 454 GAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
..+..++.+|.+.|++++|.+.+++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999998764
No 315
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.68 E-value=1.2 Score=25.96 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=19.3
Q ss_pred chhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 454 GAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
.+++.|+..|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4567777777777777777777776653
No 316
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.61 E-value=2.8 Score=37.18 Aligned_cols=100 Identities=15% Similarity=0.112 Sum_probs=64.6
Q ss_pred ccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC-CCh-----hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 010837 279 VFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-KNV-----FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352 (499)
Q Consensus 279 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 352 (499)
|......+...++..-....+++++...+-++.+ ++. .+-.+.++.+. .-+.++++.++..=...|+-||.++
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 4444455555555555556677777776666553 211 11112223222 3366788888888888888888888
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHchHh
Q 010837 353 FLGALSACGHAGLVDKGREIFESMERD 379 (499)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~ 379 (499)
++.+++.+.+.+++..|.++.-.|..+
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 888888888888888888877776643
No 317
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=87.54 E-value=5.5 Score=31.83 Aligned_cols=100 Identities=17% Similarity=0.043 Sum_probs=61.8
Q ss_pred ChhHHHHHHHHH---HhcCCHHHHHHHHHhCCC-CCCHHHHH-HHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHH
Q 010837 385 KMEHYACMVDLL---GRAGSLEQALKFVLEMPE-KPNSDVWA-ALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVAL 459 (499)
Q Consensus 385 ~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~-~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 459 (499)
+..+.+.|+..+ .+.++.+++..++..+.- +|...... .-...+...|++.+|+.+|+++.+..+.. +. -..|
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~-p~-~kAL 83 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGF-PY-AKAL 83 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-hH-HHHH
Confidence 334556666654 467899999999988766 45443322 22344778999999999999987776554 33 3344
Q ss_pred HHHHH-hcCChHHHHHHHHHHHhCCCccC
Q 010837 460 SNTLA-AAGKWDSVTELREKMKLRGVLKD 487 (499)
Q Consensus 460 ~~~~~-~~g~~~~A~~~~~~~~~~~~~~~ 487 (499)
+..|. ..|+ ..=...-+++.+.+-.|+
T Consensus 84 lA~CL~~~~D-~~Wr~~A~evle~~~d~~ 111 (160)
T PF09613_consen 84 LALCLYALGD-PSWRRYADEVLESGADPD 111 (160)
T ss_pred HHHHHHHcCC-hHHHHHHHHHHhcCCChH
Confidence 44444 4444 333344455666665554
No 318
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.20 E-value=1.2 Score=24.87 Aligned_cols=24 Identities=25% Similarity=0.086 Sum_probs=12.8
Q ss_pred CCChHHHHHHHHHHHcCCChhHHH
Q 010837 77 KPNTNISIKLLILHLKCGALKYAG 100 (499)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~A~ 100 (499)
+-+...|+.+..+|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 334555555555555555555553
No 319
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.18 E-value=1.4 Score=23.92 Aligned_cols=24 Identities=13% Similarity=-0.085 Sum_probs=10.7
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcC
Q 010837 425 LSSCRLHDDVEMANIAANEIFKLN 448 (499)
Q Consensus 425 ~~~~~~~~~~~~a~~~~~~~~~~~ 448 (499)
..++.+.|++++|.+.|+++++..
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHccCHHHHHHHHHHHHHHC
Confidence 333444444444444444444433
No 320
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.91 E-value=1.8 Score=25.13 Aligned_cols=29 Identities=17% Similarity=0.127 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 010837 418 SDVWAALLSSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 418 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 446 (499)
..+++.|...|...|++++|..+++++.+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35677788888888888888888887765
No 321
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.52 E-value=20 Score=30.74 Aligned_cols=52 Identities=10% Similarity=0.065 Sum_probs=31.7
Q ss_pred CCHHHHHHHHHhCCC-----CCCHHH---HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 400 GSLEQALKFVLEMPE-----KPNSDV---WAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 400 ~~~~~a~~~~~~~~~-----~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.++++|+..|+..-+ +.+... +.-+..--...+++.+|+.+|++.......+
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n 187 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDN 187 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455666666655443 112222 2222333456789999999999998877776
No 322
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.42 E-value=1.4 Score=26.31 Aligned_cols=26 Identities=23% Similarity=0.354 Sum_probs=20.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC
Q 010837 458 ALSNTLAAAGKWDSVTELREKMKLRG 483 (499)
Q Consensus 458 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 483 (499)
.|..+|...|+.+.|.++++++...|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 56778888888888888888877544
No 323
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=86.34 E-value=13 Score=30.86 Aligned_cols=92 Identities=14% Similarity=0.090 Sum_probs=65.9
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHH
Q 010837 322 IDGYGKNGNPNQALELFCMMQECCVQPNY-----VTFLGALSACGHAGLVDKGREIFESMERDYSMKPK-MEHYACMVDL 395 (499)
Q Consensus 322 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 395 (499)
..-+..+|++++|..-|.+..+. +++.. ..|..-..++.+.+.++.|+.--...+ .+.|+ ......-..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKai---el~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAI---ELNPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhH---hcCchhHHHHHHHHHH
Confidence 44578899999999999999886 33322 234445567888899999988877777 44552 2223333557
Q ss_pred HHhcCCHHHHHHHHHhCCC-CCC
Q 010837 396 LGRAGSLEQALKFVLEMPE-KPN 417 (499)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~-~~~ 417 (499)
|.+..++++|++-|+++.+ .|.
T Consensus 178 yek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHhCcc
Confidence 8888999999999998887 344
No 324
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=86.28 E-value=24 Score=31.45 Aligned_cols=134 Identities=12% Similarity=0.099 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCC----hhHHHHHHHHHHhCCChhHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKN----VFTWTSMIDGYGKNGNPNQALELF 338 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~ 338 (499)
++..++...+......... +...-..+..+|...|+.+.|..++..+.... ......-|..+.+.....+...+-
T Consensus 148 e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~ 226 (304)
T COG3118 148 EDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQ 226 (304)
T ss_pred cchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 4444555555555444322 23344456677777777777777777766421 111122233444444444444443
Q ss_pred HHHHHcCCCC-CHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcC
Q 010837 339 CMMQECCVQP-NYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAG 400 (499)
Q Consensus 339 ~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~ 400 (499)
.+.-. .| |...-..+...+...|+.+.|.+.+=.+.++..-.-|...-..|+..+.-.|
T Consensus 227 ~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 227 RRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 33332 23 4444444555566666666665554444433111123334444555444433
No 325
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=86.07 E-value=1.3 Score=26.51 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=19.1
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcC
Q 010837 423 ALLSSCRLHDDVEMANIAANEIFKLN 448 (499)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (499)
.|..+|...|+.+.|.+++++++..+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35677788888888888888777544
No 326
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=85.82 E-value=31 Score=32.35 Aligned_cols=58 Identities=10% Similarity=0.090 Sum_probs=40.0
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHH-hcCChHHHHHHHHHHHh
Q 010837 424 LLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLA-AAGKWDSVTELREKMKL 481 (499)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~ 481 (499)
.+..+.+.|-+..|.++.+-+...+|..|+......|..|+ +.++++--+++.+....
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 34556777778888888888878777755666666777664 66777666666666544
No 327
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=85.59 E-value=81 Score=36.94 Aligned_cols=161 Identities=8% Similarity=-0.050 Sum_probs=90.1
Q ss_pred HHHHhhhCCCChhhHHHHHHHHHHhCC--CCChHHHHHHHHHHHcCCChhHHHHHhcc-CCCCChHHHHHHHHHHHhCCC
Q 010837 50 SALQHYINSDTPFYGLKIHAHITKTGV--KPNTNISIKLLILHLKCGALKYAGQMFDE-LPQRTLSAYNYMIAGYLKNGQ 126 (499)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~ 126 (499)
.+..+--+.+.+..|...++.-..... .-....+-.+...|+.-++.|...-+... ...++.. .-|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl~---~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSLY---QQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccHH---HHHHHHHhhcc
Confidence 455566678888888888887311110 11223344444588888888888777763 3333332 23444566799
Q ss_pred hhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhH-HHHHHHHHHhCCChhHH
Q 010837 127 VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVL-YTALVDSYVKGGKTSYA 205 (499)
Q Consensus 127 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A 205 (499)
++.|...|+.+.+.+ ++...+++-++... ...+.........+..... ..+.... ++.=+.+-.+.++++..
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sm-----l~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~ 1537 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSM-----LAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLL 1537 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhh-----hcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhh
Confidence 999999999998863 22355666565554 3444444443332222211 1222222 22333444677788777
Q ss_pred HHHHHhccCCChHhHHHH
Q 010837 206 RIVFDMMLEKNVICSTSM 223 (499)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l 223 (499)
..... ..+..+|...
T Consensus 1538 e~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1538 ESYLS---DRNIEYWSVE 1552 (2382)
T ss_pred hhhhh---cccccchhHH
Confidence 76665 4445555444
No 328
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=85.58 E-value=1.5 Score=34.69 Aligned_cols=80 Identities=13% Similarity=0.005 Sum_probs=56.5
Q ss_pred CCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHH
Q 010837 162 NVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFR 241 (499)
Q Consensus 162 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 241 (499)
...+.......+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.++++.-++.
T Consensus 18 ~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a~~Ly~ 94 (143)
T PF00637_consen 18 EERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEAVYLYS 94 (143)
T ss_dssp TTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHHHHHHH
Confidence 55666777777788877766667788889999999999888888888774332 334556677777777777777777
Q ss_pred hcC
Q 010837 242 KTV 244 (499)
Q Consensus 242 ~~~ 244 (499)
++.
T Consensus 95 ~~~ 97 (143)
T PF00637_consen 95 KLG 97 (143)
T ss_dssp CCT
T ss_pred Hcc
Confidence 653
No 329
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=85.47 E-value=2.2 Score=23.46 Aligned_cols=28 Identities=25% Similarity=0.307 Sum_probs=25.2
Q ss_pred chhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 454 GAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 454 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
.+|..++..|...|++++|.+.|++..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4678899999999999999999998876
No 330
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=85.27 E-value=40 Score=33.18 Aligned_cols=340 Identities=12% Similarity=0.078 Sum_probs=169.0
Q ss_pred HHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHc-CCC-CchhHHHHHHHHHH
Q 010837 120 GYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKC-DVK-ADDVLYTALVDSYV 197 (499)
Q Consensus 120 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~-~~~~~~~~l~~~~~ 197 (499)
.=.+.|..+.+.++|++-.+ |++.+...|...+..+. ...++.+.....|+..... |.. .+...|...|..-.
T Consensus 88 ~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~----n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en 162 (577)
T KOG1258|consen 88 YEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLK----NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFEN 162 (577)
T ss_pred HHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHh----ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHh
Confidence 33445555666666665554 24444444444443332 3444444455555544432 222 23345666676667
Q ss_pred hCCChhHHHHHHHhccCCChHhHHHHHHHHH---hC------CCHHHHHHHHHhcCC--------CChhhHHHHHHHHhc
Q 010837 198 KGGKTSYARIVFDMMLEKNVICSTSMISGFM---SQ------GFVEDAEEIFRKTVE--------KDIVVYNAMIEGYSI 260 (499)
Q Consensus 198 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~---~~------g~~~~a~~~~~~~~~--------~~~~~~~~ll~~~~~ 260 (499)
.++++.....+++++.+-....++....-|. +. ...+++.++-..... +........+.....
T Consensus 163 ~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~ 242 (577)
T KOG1258|consen 163 GQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTD 242 (577)
T ss_pred ccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccC
Confidence 7888888888888887654444444333322 22 112222222111110 111122222222222
Q ss_pred ChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCC-----------CChhHHHHHHHHHHhCC
Q 010837 261 SIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQ-----------KNVFTWTSMIDGYGKNG 329 (499)
Q Consensus 261 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------~~~~~~~~l~~~~~~~g 329 (499)
..+..+.+.......... --.++-..-........|+.-.+ .+...|...+.--...|
T Consensus 243 ~s~~l~~~~~~l~~~~~~-----------~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g 311 (577)
T KOG1258|consen 243 PSKSLTEEKTILKRIVSI-----------HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLG 311 (577)
T ss_pred ccchhhHHHHHHHHHHHH-----------HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcc
Confidence 222222222222211111 01112222333334444444332 25568888888889999
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCC--CChhHHHHHHHHHHhcCCHHHHHH
Q 010837 330 NPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMK--PKMEHYACMVDLLGRAGSLEQALK 407 (499)
Q Consensus 330 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~ 407 (499)
+.+.+.-+|++...-- ..=...|-..+.-....|+.+-|..++.... +.-++ |......+.+ .-..|+++.|..
T Consensus 312 ~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~-~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~ 387 (577)
T KOG1258|consen 312 DFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARAC-KIHVKKTPIIHLLEARF--EESNGNFDDAKV 387 (577)
T ss_pred cHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhh-hhcCCCCcHHHHHHHHH--HHhhccHHHHHH
Confidence 9999999999876421 1111223333333344489998888887766 32332 2233333322 234689999999
Q ss_pred HHHhCCCC-CCHH-HHHHHHHHHhhcCCHHHHHH---HHHHHHhcCCCCCCchhHHHHHHH-----HhcCChHHHHHHHH
Q 010837 408 FVLEMPEK-PNSD-VWAALLSSCRLHDDVEMANI---AANEIFKLNANDRPGAYVALSNTL-----AAAGKWDSVTELRE 477 (499)
Q Consensus 408 ~~~~~~~~-~~~~-~~~~l~~~~~~~~~~~~a~~---~~~~~~~~~~~~~~~~~~~l~~~~-----~~~g~~~~A~~~~~ 477 (499)
+++.+.+. |+.. .-..-+....+.|+.+.+.. ++.... .+... ..+...+.--+ .-.++.+.|..++.
T Consensus 388 ~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~-~~~~~-~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~ 465 (577)
T KOG1258|consen 388 ILQRIESEYPGLVEVVLRKINWERRKGNLEDANYKNELYSSIY-EGKEN-NGILEKLYVKFARLRYKIREDADLARIILL 465 (577)
T ss_pred HHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhc-ccccC-cchhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99999873 4332 22223344567788877773 332222 22222 23333322222 23567889999998
Q ss_pred HHHh
Q 010837 478 KMKL 481 (499)
Q Consensus 478 ~~~~ 481 (499)
.+.+
T Consensus 466 ~~~~ 469 (577)
T KOG1258|consen 466 EAND 469 (577)
T ss_pred Hhhh
Confidence 8765
No 331
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=85.08 E-value=1.3 Score=24.06 Aligned_cols=28 Identities=21% Similarity=0.305 Sum_probs=24.4
Q ss_pred hhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 455 AYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 455 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
++..++.++.+.|++++|.+.++++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567889999999999999999998864
No 332
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.67 E-value=25 Score=31.27 Aligned_cols=59 Identities=15% Similarity=0.132 Sum_probs=35.7
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 318 WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 318 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
++.....|..+|.+.+|..+-++....+ +.+...+-.++..+...|+--.+.+-++++.
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 3444456666777777777776666542 4455566666677777776555555554443
No 333
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=83.91 E-value=8.1 Score=32.21 Aligned_cols=77 Identities=17% Similarity=0.215 Sum_probs=48.6
Q ss_pred HHhcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC---CCCCCchhHHHHHHHHhcCChH
Q 010837 396 LGRAGSLEQALKFVLEMPEKP--NSDVWAALLSSCRLHDDVEMANIAANEIFKLN---ANDRPGAYVALSNTLAAAGKWD 470 (499)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~ 470 (499)
..+.|+ +.|.+.|-++...| +.......+..|....|.++++.++-++++.. ..+++..+..|+..|.+.|+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 334444 56666666666532 22233333344455678888888888877632 2456788888888888888887
Q ss_pred HHH
Q 010837 471 SVT 473 (499)
Q Consensus 471 ~A~ 473 (499)
.|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 763
No 334
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.50 E-value=28 Score=29.89 Aligned_cols=55 Identities=16% Similarity=0.161 Sum_probs=30.0
Q ss_pred HhcCCHHHHHHHHHhCCC---CCCHHHHHH---HHH--HH-hhcCCHHHHHHHHHHHHhcCCCC
Q 010837 397 GRAGSLEQALKFVLEMPE---KPNSDVWAA---LLS--SC-RLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~---~~~~~~~~~---l~~--~~-~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
...+++.+|+++|+++.. ..+..-|.. ++. .| .-..|.-.+...+++..+..|..
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F 228 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAF 228 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcc
Confidence 456778888888877654 111111111 111 12 22356666777777777777766
No 335
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=83.22 E-value=21 Score=28.17 Aligned_cols=86 Identities=13% Similarity=0.090 Sum_probs=55.0
Q ss_pred HHHhCCCCCh--HHHHHHHHHHHcCCChhHHHHHhccCCC---------CChHHHHHHHHHHHhCCC-hhhHHHHHHHHH
Q 010837 71 ITKTGVKPNT--NISIKLLILHLKCGALKYAGQMFDELPQ---------RTLSAYNYMIAGYLKNGQ-VEESLSLVRKLV 138 (499)
Q Consensus 71 ~~~~~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~ 138 (499)
|.+.+..++. ...|.++......+++.....+++.+.. .+...|+.++.+.++... --.+..+|..|+
T Consensus 28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk 107 (145)
T PF13762_consen 28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK 107 (145)
T ss_pred hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence 4444555544 3347777777777788877777777642 244467777777755544 344566777777
Q ss_pred HcCCCCChhhHHHHhhhc
Q 010837 139 SSGERPDGYTFSMILKAS 156 (499)
Q Consensus 139 ~~g~~p~~~~~~~ll~~~ 156 (499)
+.+.+++..-|..++.++
T Consensus 108 ~~~~~~t~~dy~~li~~~ 125 (145)
T PF13762_consen 108 KNDIEFTPSDYSCLIKAA 125 (145)
T ss_pred HcCCCCCHHHHHHHHHHH
Confidence 666777777777777775
No 336
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=83.22 E-value=4.2 Score=29.11 Aligned_cols=60 Identities=8% Similarity=0.127 Sum_probs=43.4
Q ss_pred ChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC---CChHHHHHHHH
Q 010837 60 TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ---RTLSAYNYMIA 119 (499)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~ 119 (499)
+.-++.+-++.+...++-|++.+..+.+++|.|.+++..|.++|+.++. .+...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHHH
Confidence 5556677777777778888888888888888888888888888886652 12334555443
No 337
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.66 E-value=4.8 Score=35.85 Aligned_cols=101 Identities=9% Similarity=0.028 Sum_probs=49.9
Q ss_pred CCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcC--CCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CCCHH
Q 010837 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYS--MKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSD 419 (499)
Q Consensus 345 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~ 419 (499)
|......+...++..-....+++.++.++-.+..... ..|+...+ ..++ ++-.-+.++++.++..=.. =||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~ir-lllky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIR-LLLKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHH-HHHccChHHHHHHHhCcchhccccchh
Confidence 4444555555555555555666666666655542100 01111111 1122 2223344555555544333 26666
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhc
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFKL 447 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 447 (499)
+++.+++.+.+.+++.+|.++.-.|+..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 6666666666666666666665555543
No 338
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=82.37 E-value=35 Score=30.26 Aligned_cols=33 Identities=12% Similarity=0.078 Sum_probs=21.2
Q ss_pred ChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCCh
Q 010837 216 NVICSTSMISGFMSQGFVEDAEEIFRKTVEKDI 248 (499)
Q Consensus 216 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 248 (499)
+......+...|.+.|++.+|..-|-...+++.
T Consensus 89 dp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~ 121 (260)
T PF04190_consen 89 DPELHHLLAEKLWKEGNYYEAERHFLLGTDPSA 121 (260)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHH
T ss_pred CHHHHHHHHHHHHhhccHHHHHHHHHhcCChhH
Confidence 566777778888888888888877755433333
No 339
>PRK09687 putative lyase; Provisional
Probab=82.12 E-value=38 Score=30.46 Aligned_cols=61 Identities=8% Similarity=0.014 Sum_probs=27.2
Q ss_pred CCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCCh----hhHHHHHHHH
Q 010837 77 KPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQV----EESLSLVRKL 137 (499)
Q Consensus 77 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m 137 (499)
.+|..+....+.++...|..+-...+.+-+..+|...-...+.++...|+. .++..++..+
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l 98 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNL 98 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHH
Confidence 344445555555555555433322222222334444444455555555542 2344555444
No 340
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=81.90 E-value=26 Score=28.45 Aligned_cols=134 Identities=10% Similarity=0.140 Sum_probs=68.6
Q ss_pred HHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhh
Q 010837 171 RMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVV 250 (499)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 250 (499)
.++.+.+.+.+++|+...+..+++.+.+.|++.....++.--.-+|. ..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DS-------------------------------k~ 62 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQYHVIPDS-------------------------------KP 62 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcccCCc-------------------------------HH
Confidence 44555556667777777777777777777776665555543322222 11
Q ss_pred HHHHHHHHh-cChhhHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCC
Q 010837 251 YNAMIEGYS-ISIETARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNG 329 (499)
Q Consensus 251 ~~~ll~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g 329 (499)
....+-.+. ....-..-+.+++.++.. .+..+++.+...|++-+|.++.+....-+......++++-.+.+
T Consensus 63 lA~~LLs~~~~~~~~~Ql~lDMLkRL~~--------~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~ 134 (167)
T PF07035_consen 63 LACQLLSLGNQYPPAYQLGLDMLKRLGT--------AYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSN 134 (167)
T ss_pred HHHHHHHhHccChHHHHHHHHHHHHhhh--------hHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcC
Confidence 111111111 111111223333333221 13345666777788888887777654444444455566666666
Q ss_pred ChhHHHHHHHHHHH
Q 010837 330 NPNQALELFCMMQE 343 (499)
Q Consensus 330 ~~~~a~~~~~~m~~ 343 (499)
|...=..+++-..+
T Consensus 135 D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 135 DDQLFYAVFRFFEE 148 (167)
T ss_pred CHHHHHHHHHHHHH
Confidence 65555555554444
No 341
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.82 E-value=61 Score=32.62 Aligned_cols=14 Identities=14% Similarity=-0.052 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHcc
Q 010837 266 RKALEVHCQLIKNV 279 (499)
Q Consensus 266 ~~a~~~~~~~~~~~ 279 (499)
..+..+++...+.|
T Consensus 229 ~~a~~~~~~~a~~g 242 (552)
T KOG1550|consen 229 SEAFKYYREAAKLG 242 (552)
T ss_pred hHHHHHHHHHHhhc
Confidence 34555555555544
No 342
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=81.75 E-value=37 Score=30.11 Aligned_cols=133 Identities=15% Similarity=0.119 Sum_probs=60.5
Q ss_pred cCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHH----HHHHHcCCCCChhhHHHHhhhccccccCCcCcc
Q 010837 92 KCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLV----RKLVSSGERPDGYTFSMILKASTCCRSNVPLPR 167 (499)
Q Consensus 92 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~ 167 (499)
+++++++|.+++-. =...+.+.|+...|.++- +-+.+.++++|......++..+...........
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34566666665433 122344455554443333 223334555555544444443321111222223
Q ss_pred hhHHHHHHHHHHcCCC--CchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHH
Q 010837 168 NLGRMVHAQILKCDVK--ADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236 (499)
Q Consensus 168 ~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 236 (499)
........+- +.|-. -++.....+...|.+.|++.+|..-|-.-..++...+..++......|...++
T Consensus 71 ~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~ 140 (260)
T PF04190_consen 71 KFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA 140 (260)
T ss_dssp HHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H
T ss_pred HHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch
Confidence 3333344444 33322 36678888999999999999999877655544444443344444444444433
No 343
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=80.94 E-value=40 Score=30.00 Aligned_cols=60 Identities=13% Similarity=0.032 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
+++.....|..+|.+.+|.++.++.+..++-. ...+..|++.|...|+--.|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~-e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLS-EQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhh-hHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 34455577899999999999999999999877 8889999999999999777777666654
No 344
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=80.71 E-value=21 Score=36.33 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=11.6
Q ss_pred HHhCCChhHHHHHHHHHH
Q 010837 325 YGKNGNPNQALELFCMMQ 342 (499)
Q Consensus 325 ~~~~g~~~~a~~~~~~m~ 342 (499)
+...|+++.|++.++++.
T Consensus 515 ~~~~g~~~~AL~~i~~L~ 532 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLD 532 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT
T ss_pred HHHcCCHHHHHHHHHhCC
Confidence 346788888877766654
No 345
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.03 E-value=3.6 Score=29.78 Aligned_cols=46 Identities=9% Similarity=0.054 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC
Q 010837 62 FYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP 107 (499)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 107 (499)
-+..+-++.+....+-|++.+..+.+++|.|.+++..|.++|+.++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK 72 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK 72 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455555666666677777777777777777777777777777665
No 346
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=79.81 E-value=37 Score=28.83 Aligned_cols=162 Identities=11% Similarity=-0.006 Sum_probs=93.8
Q ss_pred CCC-chhHHHHHHHHHhcCChHHHHHHHHhcCCCChh-HHHHHHH--HHHhCCChhHHHHHHHHHHHcCCCCCH--HHHH
Q 010837 281 FED-VKLGSALVDMYAKCGKIDDARRVFDHMQQKNVF-TWTSMID--GYGKNGNPNQALELFCMMQECCVQPNY--VTFL 354 (499)
Q Consensus 281 ~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~l~~--~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~ 354 (499)
.|+ +.+||-|.-.+...|+++.|.+.|+...+-|+. -|..+=+ ++--.|++.-|.+-+...-+.+ +.|+ ..|-
T Consensus 95 ~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DPfR~LWL 173 (297)
T COG4785 95 RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDPFRSLWL 173 (297)
T ss_pred CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC-CCChHHHHHH
Confidence 344 457888888889999999999999998875442 2322222 2334688888888777776543 2222 2333
Q ss_pred HHHHHHcccCcHHHHHHHH-HHchHhcCCCCChhHHHHHHHH-HHhcCCHHHHHHHHHhCCC------CCCHHHHHHHHH
Q 010837 355 GALSACGHAGLVDKGREIF-ESMERDYSMKPKMEHYACMVDL-LGRAGSLEQALKFVLEMPE------KPNSDVWAALLS 426 (499)
Q Consensus 355 ~ll~~~~~~~~~~~a~~~~-~~~~~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~------~~~~~~~~~l~~ 426 (499)
.+. ...-++.+|..-+ ++.. +. +..-|...|-. |...=..+.+.+-...... +.-..||--|.+
T Consensus 174 Yl~---E~k~dP~~A~tnL~qR~~---~~--d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K 245 (297)
T COG4785 174 YLN---EQKLDPKQAKTNLKQRAE---KS--DKEQWGWNIVEFYLGKISEETLMERLKADATDNTSLAEHLTETYFYLGK 245 (297)
T ss_pred HHH---HhhCCHHHHHHHHHHHHH---hc--cHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHHHHHHHHHHHHHHHH
Confidence 333 2334556665433 3333 32 32333333322 2211122222222222111 122468888999
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 427 SCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 427 ~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
-+...|+.++|..+|+-++..++-.
T Consensus 246 ~~l~~G~~~~A~~LfKLaiannVyn 270 (297)
T COG4785 246 YYLSLGDLDEATALFKLAVANNVYN 270 (297)
T ss_pred HHhccccHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999988776544
No 347
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=79.75 E-value=1.4e+02 Score=35.32 Aligned_cols=154 Identities=11% Similarity=0.085 Sum_probs=91.5
Q ss_pred HHHHHHcCCChhHHHHHhccC----CCCC--hHHHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhcccc
Q 010837 86 LLILHLKCGALKYAGQMFDEL----PQRT--LSAYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMILKASTCC 159 (499)
Q Consensus 86 l~~~~~~~~~~~~A~~~~~~~----~~~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 159 (499)
+..+-.+++.+..|...|++- .+.+ ..-|..+...|+.-++++....+...-. -+...+..++..
T Consensus 1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~-----a~~sl~~qil~~---- 1459 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRF-----ADPSLYQQILEH---- 1459 (2382)
T ss_pred HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhh-----cCccHHHHHHHH----
Confidence 444556778888888888872 2221 2234555558888888888877776421 122334444433
Q ss_pred ccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCC---ChHhHHHH-HHHHHhCCCHHH
Q 010837 160 RSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEK---NVICSTSM-ISGFMSQGFVED 235 (499)
Q Consensus 160 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l-~~~~~~~g~~~~ 235 (499)
...|++..|..-++.+.+.+ ++...+++.++......|.++..+-..+..... ....|+++ +.+--+.++++.
T Consensus 1460 --e~~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1460 --EASGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred --HhhccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhh
Confidence 56677788888888877654 334667777777666777777777666665432 12223322 334466677777
Q ss_pred HHHHHHhcCCCChhhHHHH
Q 010837 236 AEEIFRKTVEKDIVVYNAM 254 (499)
Q Consensus 236 a~~~~~~~~~~~~~~~~~l 254 (499)
...... +.+..+|.+.
T Consensus 1537 ~e~~l~---~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1537 LESYLS---DRNIEYWSVE 1552 (2382)
T ss_pred hhhhhh---cccccchhHH
Confidence 766655 3344444443
No 348
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=79.09 E-value=13 Score=26.11 Aligned_cols=67 Identities=6% Similarity=0.027 Sum_probs=51.4
Q ss_pred hHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHH
Q 010837 63 YGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESL 131 (499)
Q Consensus 63 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 131 (499)
.+.++++.+.+.|+ .+......+-.+-...|+.+.|.+++..++ +.+..|..++.++-..|.-.-|.
T Consensus 20 ~~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 20 KTRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred hHHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 35577888888884 455555555544456799999999999999 99999999999999888765553
No 349
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=78.84 E-value=61 Score=30.81 Aligned_cols=64 Identities=17% Similarity=0.114 Sum_probs=44.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 010837 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 485 (499)
...|+.-|...|+..+|...++++---.+.. ...+..++.+..+.|+-+..+.+++.+-+.|+.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhH-EvVkkAlVm~mEkk~d~t~~ldLLk~cf~sglI 575 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHH-EVVKKALVMVMEKKGDSTMILDLLKECFKSGLI 575 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchH-HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCce
Confidence 4567788888899988887766543222222 456778888888888877777888777766653
No 350
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=78.80 E-value=18 Score=27.52 Aligned_cols=48 Identities=8% Similarity=0.049 Sum_probs=35.8
Q ss_pred ChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC
Q 010837 60 TPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP 107 (499)
Q Consensus 60 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 107 (499)
+--+..+.++.+...++-|++.+...-++++.+.+++..|.++|+-++
T Consensus 64 D~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK 111 (149)
T KOG4077|consen 64 DGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIK 111 (149)
T ss_pred hHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 334555666666777778888888888888888888888888887765
No 351
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.01 E-value=94 Score=32.50 Aligned_cols=213 Identities=15% Similarity=0.043 Sum_probs=110.8
Q ss_pred hhHHHHHHHHHHHHHcccCCCch-------hHHHH-HHHHHhcCChHHHHHHHHhcCC--------CChhHHHHHHHHHH
Q 010837 263 ETARKALEVHCQLIKNVFFEDVK-------LGSAL-VDMYAKCGKIDDARRVFDHMQQ--------KNVFTWTSMIDGYG 326 (499)
Q Consensus 263 ~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~ 326 (499)
..+++|..+..++...-..|+.. .++.| .......|+++.|.++-+.... ..+..+..+..+..
T Consensus 429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~ 508 (894)
T COG2909 429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAH 508 (894)
T ss_pred cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHH
Confidence 45556666666655543332221 12222 1123345777888777666543 35566777778888
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHH---HHHH--HHHcccCc--HHHHHHHHHHchHhcCCC-----CChhHHHHHHH
Q 010837 327 KNGNPNQALELFCMMQECCVQPNYVTF---LGAL--SACGHAGL--VDKGREIFESMERDYSMK-----PKMEHYACMVD 394 (499)
Q Consensus 327 ~~g~~~~a~~~~~~m~~~~~~p~~~~~---~~ll--~~~~~~~~--~~~a~~~~~~~~~~~~~~-----p~~~~~~~l~~ 394 (499)
-.|++++|..+..+..+..-.-+...+ ..+. ..+..+|. .++.+..+.......... +-..++..+..
T Consensus 509 ~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~ 588 (894)
T COG2909 509 IRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLR 588 (894)
T ss_pred HhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHH
Confidence 889999998887776553223333322 2222 22445563 233333333333221111 12234455555
Q ss_pred HHHhcCCHHHHHHHHHhCCC-----CCC--HH--HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCch-hH---HHHH
Q 010837 395 LLGRAGSLEQALKFVLEMPE-----KPN--SD--VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGA-YV---ALSN 461 (499)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~-----~~~--~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~---~l~~ 461 (499)
++.+ ++.+..-.....+ .|. .. .+..|+......|+.++|...++++......+.... |. ..+.
T Consensus 589 ~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~ 665 (894)
T COG2909 589 AWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVK 665 (894)
T ss_pred HHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhh
Confidence 5554 4433333322222 122 22 223677788899999999999998887544432222 22 2222
Q ss_pred H--HHhcCChHHHHHHHHH
Q 010837 462 T--LAAAGKWDSVTELREK 478 (499)
Q Consensus 462 ~--~~~~g~~~~A~~~~~~ 478 (499)
. -...|+.+++.....+
T Consensus 666 ~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 666 LILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhcccCCHHHHHHHHHh
Confidence 2 2367888887776655
No 352
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.23 E-value=5.9 Score=20.53 Aligned_cols=24 Identities=13% Similarity=-0.056 Sum_probs=10.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHh
Q 010837 423 ALLSSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~ 446 (499)
.+...+...|+++.|...+++.++
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHc
Confidence 333444444444444444444433
No 353
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=77.20 E-value=29 Score=30.71 Aligned_cols=49 Identities=12% Similarity=-0.004 Sum_probs=31.8
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH-------HHHHHHHHcccCcHHHH
Q 010837 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVT-------FLGALSACGHAGLVDKG 369 (499)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-------~~~ll~~~~~~~~~~~a 369 (499)
+..-..+.+++++|+..+.++...|+..|..+ ...+...|...|+...-
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l 64 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSL 64 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchH
Confidence 34455667788888888888888887766544 33455556666655443
No 354
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=76.56 E-value=13 Score=33.47 Aligned_cols=56 Identities=5% Similarity=0.141 Sum_probs=27.2
Q ss_pred HHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010837 356 ALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLE 411 (499)
Q Consensus 356 ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 411 (499)
+.-+-.+.|+..+|.+.++.+.++..+..-..+...|+.++....-+.+...++-+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLak 336 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAK 336 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334455666666666666654322211122334555555555555555444433
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.10 E-value=10 Score=26.06 Aligned_cols=47 Identities=9% Similarity=0.154 Sum_probs=21.3
Q ss_pred ccCcHHHHHHHHHHchHhcCCCCC-hhHHHHHHHHHHhcCCHHHHHHH
Q 010837 362 HAGLVDKGREIFESMERDYSMKPK-MEHYACMVDLLGRAGSLEQALKF 408 (499)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~ 408 (499)
..++.++|+..|....++..-.++ -.+...|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555533222222 12344455555555555554443
No 356
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=74.74 E-value=31 Score=25.39 Aligned_cols=89 Identities=18% Similarity=0.124 Sum_probs=60.6
Q ss_pred CCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhHHHHHHH
Q 010837 57 NSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEESLSLVRK 136 (499)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 136 (499)
-...-++|..|.+.+...+- ....+--..+..+.+.|++++|+..=.....||...|-+|-. .+.|--+++..-+.+
T Consensus 18 G~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~r 94 (116)
T PF09477_consen 18 GHHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTR 94 (116)
T ss_dssp TTT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHH
Confidence 44577899999999998874 444455555667889999999966656666789999876654 578888888888888
Q ss_pred HHHcCCCCChhhH
Q 010837 137 LVSSGERPDGYTF 149 (499)
Q Consensus 137 m~~~g~~p~~~~~ 149 (499)
+..+| .|....|
T Consensus 95 la~~g-~~~~q~F 106 (116)
T PF09477_consen 95 LASSG-SPELQAF 106 (116)
T ss_dssp HCT-S-SHHHHHH
T ss_pred HHhCC-CHHHHHH
Confidence 87665 4444443
No 357
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=74.04 E-value=55 Score=27.88 Aligned_cols=123 Identities=15% Similarity=0.067 Sum_probs=71.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCC----hhHHHHHH
Q 010837 318 WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPK----MEHYACMV 393 (499)
Q Consensus 318 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~ 393 (499)
.+..++.+.+.+..++++...++-.+.+ +.|..+-..+++.+|-.|++++|..-++... .+.|+ ...|..+|
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a---~l~p~~t~~a~lyr~li 79 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAA---TLSPQDTVGASLYRHLI 79 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHh---hcCcccchHHHHHHHHH
Confidence 4455677788888899988888776652 3455566678888899999999988877665 33443 44555555
Q ss_pred HHHHhcCCHHHHHHHHHhCCC------CCCHHHHHHHHHHH-hhcC-CHHHHHHHHHHHHhcCCCC
Q 010837 394 DLLGRAGSLEQALKFVLEMPE------KPNSDVWAALLSSC-RLHD-DVEMANIAANEIFKLNAND 451 (499)
Q Consensus 394 ~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~~l~~~~-~~~~-~~~~a~~~~~~~~~~~~~~ 451 (499)
.+ +.+..-+-.-.. .|...-...|..+. +..+ ..+.+..+-+...+..+.+
T Consensus 80 r~-------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~ 138 (273)
T COG4455 80 RC-------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVP 138 (273)
T ss_pred HH-------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCC
Confidence 43 233332222222 13333333333333 2333 4444555556666766665
No 358
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=73.76 E-value=47 Score=28.71 Aligned_cols=82 Identities=10% Similarity=-0.027 Sum_probs=41.9
Q ss_pred ccCcHHHHHHHHHHchHhcCCCCCh-hHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHH-HHHHHHHHHhhcCCHHHHH
Q 010837 362 HAGLVDKGREIFESMERDYSMKPKM-EHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSD-VWAALLSSCRLHDDVEMAN 438 (499)
Q Consensus 362 ~~~~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~a~ 438 (499)
...+++.|..-|.+.+ -+.|+. .-|+.=+.++.+..+++.+..--.+..+ .||.. ....+..+......+++|+
T Consensus 22 ~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 22 IPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred chhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHH
Confidence 3344555555555544 445544 3334445555566666655554444443 23332 3333444455566666666
Q ss_pred HHHHHHHh
Q 010837 439 IAANEIFK 446 (499)
Q Consensus 439 ~~~~~~~~ 446 (499)
..++++.+
T Consensus 99 ~~Lqra~s 106 (284)
T KOG4642|consen 99 KVLQRAYS 106 (284)
T ss_pred HHHHHHHH
Confidence 66666643
No 359
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=73.73 E-value=92 Score=30.33 Aligned_cols=50 Identities=6% Similarity=-0.035 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 365 LVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 365 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
+.+....+...+..+.|...-...+.-+-.-|....++++|++++..+.+
T Consensus 184 D~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 184 DKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILE 233 (711)
T ss_pred cHHHHHHHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhh
Confidence 44555555555554444444444455555556666666666666665554
No 360
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=73.64 E-value=24 Score=28.91 Aligned_cols=107 Identities=12% Similarity=0.038 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHhCCCCChHHHHHHHHHH---HcCCChhHHHHHhccC-------C--CCCh-HHHHHHHHHHHhCC---
Q 010837 62 FYGLKIHAHITKTGVKPNTNISIKLLILH---LKCGALKYAGQMFDEL-------P--QRTL-SAYNYMIAGYLKNG--- 125 (499)
Q Consensus 62 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~A~~~~~~~-------~--~~~~-~~~~~li~~~~~~g--- 125 (499)
+.|.+..+.-...+ +.|...++.-..++ ++.....++.+++++. . .|+- .++..+..+|...+
T Consensus 8 E~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~ 86 (186)
T PF06552_consen 8 EHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT 86 (186)
T ss_dssp HHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence 44555555544444 44555444433333 3334434444444433 2 2432 45555555544322
Q ss_pred -C-------hhhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCC
Q 010837 126 -Q-------VEESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDV 182 (499)
Q Consensus 126 -~-------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 182 (499)
+ +++|.+.|++... ..|+...|+.-+..+ ..|-+++.++.+.+.
T Consensus 87 ~d~~~A~~~F~kA~~~FqkAv~--~~P~ne~Y~ksLe~~-----------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 87 PDTAEAEEYFEKATEYFQKAVD--EDPNNELYRKSLEMA-----------AKAPELHMEIHKQGL 138 (186)
T ss_dssp --HHHHHHHHHHHHHHHHHHHH--H-TT-HHHHHHHHHH-----------HTHHHHHHHHHHSSS
T ss_pred CChHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHH-----------HhhHHHHHHHHHHHh
Confidence 2 4555566665555 489999999888775 457777777777654
No 361
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=73.52 E-value=66 Score=28.56 Aligned_cols=98 Identities=8% Similarity=-0.021 Sum_probs=60.3
Q ss_pred CCcchHHHHHHhhhCCCChhhHHHHHHHHHHhC-----CC-CC-------hHHHHHHHHHHHcCCChhHHHHHh----cc
Q 010837 43 LTATSLPSALQHYINSDTPFYGLKIHAHITKTG-----VK-PN-------TNISIKLLILHLKCGALKYAGQMF----DE 105 (499)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~-~~-------~~~~~~l~~~~~~~~~~~~A~~~~----~~ 105 (499)
|...-+......+.-+.|+..|++..++..+.= .. ++ ......=|.+++..+++.++.... +.
T Consensus 33 ~a~~lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~ 112 (309)
T PF07163_consen 33 PAVSLLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQV 112 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcC
Confidence 334445555566667788888888888766531 11 11 112334567778888888876543 22
Q ss_pred CCCCChHHHHHHHHHHHhCCChhhHHHHHHHHHHc
Q 010837 106 LPQRTLSAYNYMIAGYLKNGQVEESLSLVRKLVSS 140 (499)
Q Consensus 106 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 140 (499)
-.+--......-|-.|.+.|.+..+.++-....+.
T Consensus 113 pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~ 147 (309)
T PF07163_consen 113 PEKLPPKILELCILLYSKVQEPAAMLEVASAWLQD 147 (309)
T ss_pred cccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 22334445556666778888888888887777664
No 362
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=73.49 E-value=50 Score=27.15 Aligned_cols=111 Identities=13% Similarity=0.126 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHH---HHHHHcccCcHHHHHHHHHHchHhc----CCCCC-hhHHHHHHHHHHhcC--
Q 010837 331 PNQALELFCMMQECCVQPNYVTFLG---ALSACGHAGLVDKGREIFESMERDY----SMKPK-MEHYACMVDLLGRAG-- 400 (499)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~---ll~~~~~~~~~~~a~~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~~-- 400 (499)
++.|.+.++.-...+ +.|...++. .+.-+.+.....++.+++++...++ .+.|+ ...+..+..+|...+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 344555555433332 334443332 2333333344455656666555432 34553 345555555554322
Q ss_pred --CHHHHHHH-------HHhCCC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC
Q 010837 401 --SLEQALKF-------VLEMPE-KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLN 448 (499)
Q Consensus 401 --~~~~a~~~-------~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 448 (499)
+..+|... |++... +|+...|+.-+... ++|-++..++.+.+
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~------~kap~lh~e~~~~~ 137 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA------AKAPELHMEIHKQG 137 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH------HTHHHHHHHHHHSS
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH------HhhHHHHHHHHHHH
Confidence 22233333 333322 46666665544443 34555555554443
No 363
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.77 E-value=19 Score=31.10 Aligned_cols=18 Identities=6% Similarity=-0.027 Sum_probs=11.0
Q ss_pred HcccCcHHHHHHHHHHch
Q 010837 360 CGHAGLVDKGREIFESME 377 (499)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~ 377 (499)
+.+.|++.+|..-|+++.
T Consensus 188 lfk~~~ykEA~~~YreAi 205 (329)
T KOG0545|consen 188 LFKLGRYKEASSKYREAI 205 (329)
T ss_pred hhhhccHHHHHHHHHHHH
Confidence 445666666666666554
No 364
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=72.68 E-value=19 Score=27.36 Aligned_cols=60 Identities=15% Similarity=0.208 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHH
Q 010837 333 QALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVD 394 (499)
Q Consensus 333 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 394 (499)
+..+-++.+...++.|++......+.+|-+.+++..|.++|+-++.+.| +...+|-.+++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYVK 126 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHHH
Confidence 3455566666777888888888888888888888888888888875443 32234555443
No 365
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=72.58 E-value=40 Score=26.59 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=65.6
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHHcCC-----CCChhhHHHHhhhccccccCCcCc-chhHHHHHHHHHHcCCCCch
Q 010837 113 AYNYMIAGYLKNGQVEESLSLVRKLVSSGE-----RPDGYTFSMILKASTCCRSNVPLP-RNLGRMVHAQILKCDVKADD 186 (499)
Q Consensus 113 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-----~p~~~~~~~ll~~~~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~ 186 (499)
..|.++.-.+..+++...+.+++.+..... ..+..+|++++++. ..... .-.+..+|..+.+.+.+.+.
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~Sl-----snSsSaK~~~~~Lf~~Lk~~~~~~t~ 115 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSL-----SNSSSAKLTSLTLFNFLKKNDIEFTP 115 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHH-----ccChHHHHHHHHHHHHHHHcCCCCCH
Confidence 467888888888999999999988744210 34566899999988 55544 56678889999998899999
Q ss_pred hHHHHHHHHHHhCCC
Q 010837 187 VLYTALVDSYVKGGK 201 (499)
Q Consensus 187 ~~~~~l~~~~~~~g~ 201 (499)
.-|..++.++.+...
T Consensus 116 ~dy~~li~~~l~g~~ 130 (145)
T PF13762_consen 116 SDYSCLIKAALRGYF 130 (145)
T ss_pred HHHHHHHHHHHcCCC
Confidence 999999998877533
No 366
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.20 E-value=2.9 Score=37.60 Aligned_cols=116 Identities=20% Similarity=0.157 Sum_probs=73.5
Q ss_pred cccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCH-HHHHHHHHHHhhcCCHHHH
Q 010837 361 GHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNS-DVWAALLSSCRLHDDVEMA 437 (499)
Q Consensus 361 ~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~a 437 (499)
...|.++.|++.|...+ .+.| ....|..-..++.+.++...|++=+....+ .||. .-|-.-..+....|++++|
T Consensus 125 ln~G~~~~ai~~~t~ai---~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAI---ELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhccccccc---ccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHH
Confidence 35678888888888877 3344 455565566677788888888877776665 3433 2344444455667888888
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 438 NIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
...+....+.+... .+-..+-...-..+..++-...+++..+
T Consensus 202 a~dl~~a~kld~dE--~~~a~lKeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 202 AHDLALACKLDYDE--ANSATLKEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHhccccH--HHHHHHHHhccchhhhhhchhHHHHHHH
Confidence 88888888887766 3333444444455555555555554443
No 367
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=72.18 E-value=42 Score=25.80 Aligned_cols=61 Identities=10% Similarity=0.117 Sum_probs=40.1
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCC-CchhHHHHHHHHhcCChHHHHHHHHH
Q 010837 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR-PGAYVALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 415 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
+.|.......+...-... .+.++|+.|...++... +..|...+..+...|++++|.++++.
T Consensus 63 ~nD~RylkiWi~ya~~~~---~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 63 KNDERYLKIWIKYADLSS---DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp TT-HHHHHHHHHHHTTBS---HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcc---CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 345554444443322222 78888999888665542 55678888889999999999999875
No 368
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=72.06 E-value=31 Score=24.22 Aligned_cols=63 Identities=14% Similarity=-0.058 Sum_probs=44.1
Q ss_pred CCcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCC
Q 010837 43 LTATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELP 107 (499)
Q Consensus 43 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 107 (499)
|+...|..-++.....+ .++. ++|+.....|+..|+.+|..++..+.-.=-.+...++++.|.
T Consensus 8 ~~~~~~k~~~~rk~~Ls-~eE~-EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 8 PTAQVYKYSLRRKKVLS-AEEV-ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred ChHHHHHHHHHHHhccC-HHHH-HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34555665554433322 2222 889988899999999999999998877767777777777664
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=71.34 E-value=9.4 Score=26.21 Aligned_cols=46 Identities=11% Similarity=0.059 Sum_probs=26.7
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC--CCchhHHHHHHHHhcCChHHHHHH
Q 010837 430 LHDDVEMANIAANEIFKLNAND--RPGAYVALSNTLAAAGKWDSVTEL 475 (499)
Q Consensus 430 ~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 475 (499)
...+.+.|+..|+.+++.-.++ ...++..++.+|...|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666654443 123444566666666666666554
No 370
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=70.33 E-value=26 Score=27.14 Aligned_cols=69 Identities=7% Similarity=0.084 Sum_probs=45.5
Q ss_pred CCChhHHHHHHHHHHhcCC---HHHHHHHHHhCCC--CCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 383 KPKMEHYACMVDLLGRAGS---LEQALKFVLEMPE--KPN--SDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 383 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~--~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.++..+--.+.-++.+..+ ..+.+.+++++.+ .|+ .....-|.-++.+.+++++++++.+.+++..|.+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n 104 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNN 104 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence 4555555566666666554 4456667777664 222 2344445567888889999998888888877766
No 371
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=70.19 E-value=22 Score=30.16 Aligned_cols=74 Identities=20% Similarity=0.154 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC-CC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCC--CchhHHHHHH
Q 010837 389 YACMVDLLGRAGSLEQALKFVLEMPE-KP-NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR--PGAYVALSNT 462 (499)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~ 462 (499)
.+.-+..+.+.+..++|+...++-.+ +| |..+-..++..++-.|++++|..-++-.-+..++.+ ...|..++++
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34456667788899999988765544 55 445667778889999999999988888777666542 3456666654
No 372
>PRK10941 hypothetical protein; Provisional
Probab=70.04 E-value=30 Score=30.82 Aligned_cols=61 Identities=11% Similarity=0.021 Sum_probs=40.1
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhC
Q 010837 421 WAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLR 482 (499)
Q Consensus 421 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 482 (499)
.+.+-.+|.+.++++.|..+.+.+....|+. +.-+..-+-.|.+.|.+..|..=++...+.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~d-p~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPED-PYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3444455667777777777777777777666 556666666677777777777666666543
No 373
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=69.76 E-value=1.5e+02 Score=31.09 Aligned_cols=53 Identities=11% Similarity=0.078 Sum_probs=34.8
Q ss_pred HHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCC
Q 010837 189 YTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEK 246 (499)
Q Consensus 189 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 246 (499)
+.+.-..+...|+.+.+..+-.-+. -|..++.-+++.+.+++|++++..-..|
T Consensus 507 retv~~l~~~~~~~e~ll~fA~l~~-----d~~~vv~~~~q~e~yeeaLevL~~~~~~ 559 (911)
T KOG2034|consen 507 RETVYQLLASHGRQEELLQFANLIK-----DYEFVVSYWIQQENYEEALEVLLNQRNP 559 (911)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 3344444555666666655544433 4666788888999999999998876543
No 374
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=69.19 E-value=1.7e+02 Score=31.63 Aligned_cols=256 Identities=9% Similarity=-0.027 Sum_probs=144.0
Q ss_pred HHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCch
Q 010837 206 RIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK 285 (499)
Q Consensus 206 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 285 (499)
..+.+.+..++..+-...+..+.+.+..+-...+...+.+++...-...+.++....... .....+..+.+. +|..
T Consensus 624 ~~L~~~L~D~d~~VR~~Av~~L~~~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-~~~~~L~~~L~~---~d~~ 699 (897)
T PRK13800 624 AELAPYLADPDPGVRRTAVAVLTETTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL-PPAPALRDHLGS---PDPV 699 (897)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhhhcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-CchHHHHHHhcC---CCHH
Confidence 355555566777777777777777776554444444444566554444444443221111 111222233332 4555
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCc
Q 010837 286 LGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGL 365 (499)
Q Consensus 286 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 365 (499)
+-...+.++...+.- ....+...+..+|...-...+.++.+.+..+. +..+. -.++...-.....++...+.
T Consensus 700 VR~~A~~aL~~~~~~-~~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~ 771 (897)
T PRK13800 700 VRAAALDVLRALRAG-DAALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGA 771 (897)
T ss_pred HHHHHHHHHHhhccC-CHHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhcc
Confidence 555666666654422 12345556667787777777777776655432 22222 24555555666667666665
Q ss_pred HHH-HHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 010837 366 VDK-GREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEI 444 (499)
Q Consensus 366 ~~~-a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 444 (499)
.+. +...+..+.. .++..+-...+.++...|..+.+...+..+...++...-...+.++...+. +++...+..+
T Consensus 772 ~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~ 846 (897)
T PRK13800 772 GGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEA 846 (897)
T ss_pred ccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHH
Confidence 432 3344444442 356777788888888888866655555555655676666667777777765 3455555554
Q ss_pred HhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 445 FKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
.+ +++...-...+.++.+.+.-..+...+....+
T Consensus 847 L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 847 LT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred hc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 42 33456666777777775333456666655544
No 375
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=69.18 E-value=43 Score=28.65 Aligned_cols=67 Identities=10% Similarity=-0.038 Sum_probs=37.7
Q ss_pred HHHHHHHHhhcCCH-------HHHHHHHHHHHhcCCCC-----CCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 010837 421 WAALLSSCRLHDDV-------EMANIAANEIFKLNAND-----RPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487 (499)
Q Consensus 421 ~~~l~~~~~~~~~~-------~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 487 (499)
+..+...|...|+. ..|.+.|++..+....| .......++....+.|++++|.+.|.++...+-.+.
T Consensus 121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 33344445555553 34444555555433222 123455666677788888888888888776554443
No 376
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=68.82 E-value=65 Score=28.61 Aligned_cols=84 Identities=5% Similarity=-0.088 Sum_probs=51.9
Q ss_pred HHHHHcccCcHHHHHHHHHHchHh-cCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CCCHHHHHHHHHHH---
Q 010837 356 ALSACGHAGLVDKGREIFESMERD-YSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KPNSDVWAALLSSC--- 428 (499)
Q Consensus 356 ll~~~~~~~~~~~a~~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~l~~~~--- 428 (499)
-|++++..+++.++....-..-+. -.++ ..+...-|-.|.+.+....+.++-..-.. +.+...|..++..|
T Consensus 89 GIQALAEmnrWreVLsWvlqyYq~pEklP--pkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 89 GIQALAEMNRWREVLSWVLQYYQVPEKLP--PKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhcCcccCC--HHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHH
Confidence 467888888888876543322211 0223 34455556678888888887777665554 22334566666555
Q ss_pred --hhcCCHHHHHHHH
Q 010837 429 --RLHDDVEMANIAA 441 (499)
Q Consensus 429 --~~~~~~~~a~~~~ 441 (499)
.=.|.+++|+++.
T Consensus 167 VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 167 VLLPLGHFSEAEELV 181 (309)
T ss_pred HHhccccHHHHHHHH
Confidence 4468888888776
No 377
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=68.80 E-value=23 Score=25.50 Aligned_cols=54 Identities=15% Similarity=0.091 Sum_probs=32.3
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCC--------CchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 428 CRLHDDVEMANIAANEIFKLNANDR--------PGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
..+.||+.+|.+.+.+..+.....+ ......++......|++++|.+.+++.++
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3466777777666666554322211 12233456666778888888888877654
No 378
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=68.67 E-value=22 Score=29.80 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=9.3
Q ss_pred CChhHHHHHHHHHHhcCCHHHHHHH
Q 010837 384 PKMEHYACMVDLLGRAGSLEQALKF 408 (499)
Q Consensus 384 p~~~~~~~l~~~~~~~~~~~~a~~~ 408 (499)
|+..+|..++..+...|+.++|.++
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~ 166 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQW 166 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3333333333333333333333333
No 379
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=68.12 E-value=1.5e+02 Score=30.40 Aligned_cols=185 Identities=15% Similarity=0.159 Sum_probs=93.7
Q ss_pred HhcCChHHHHHHHHhcCC-----CC-----hhHHHH--HHHHHHhCCChhHHHHHHH--------HHHHcCCCCCHHHHH
Q 010837 295 AKCGKIDDARRVFDHMQQ-----KN-----VFTWTS--MIDGYGKNGNPNQALELFC--------MMQECCVQPNYVTFL 354 (499)
Q Consensus 295 ~~~g~~~~a~~~~~~~~~-----~~-----~~~~~~--l~~~~~~~g~~~~a~~~~~--------~m~~~~~~p~~~~~~ 354 (499)
+-.+++..|...+..+.+ ++ ...+.. ..-.+...|+.+.|...|. .....+...+...+.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila 451 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILA 451 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHH
Confidence 345788888888887763 11 122222 3333445799999999997 444444444444443
Q ss_pred HH----HHHHcccCcHHH--HHHHHHHchHhcCCCCC--hhHHHHH-HHHHHhc---------CCHHHHHHHH-HhCCCC
Q 010837 355 GA----LSACGHAGLVDK--GREIFESMERDYSMKPK--MEHYACM-VDLLGRA---------GSLEQALKFV-LEMPEK 415 (499)
Q Consensus 355 ~l----l~~~~~~~~~~~--a~~~~~~~~~~~~~~p~--~~~~~~l-~~~~~~~---------~~~~~a~~~~-~~~~~~ 415 (499)
.+ |.-+......++ +.++++.+.....-.|+ ..++..+ +.++... ..+.++++.. +.....
T Consensus 452 ~LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~ 531 (608)
T PF10345_consen 452 ALNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNS 531 (608)
T ss_pred HHHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccc
Confidence 21 111222223333 77777777633333332 2233333 3333211 1233444444 222221
Q ss_pred -CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcC---CCCCCchhH-----HHHHHHHhcCChHHHHHHHHHHH
Q 010837 416 -PNSDVWAALLSSCRLHDDVEMANIAANEIFKLN---ANDRPGAYV-----ALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 416 -~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
-...+++.+...+. .|+..+............ ++.....|. .+...|...|+.++|.....+..
T Consensus 532 ~l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 532 QLLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred hHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 11223333333344 677777665555444322 222334453 34455778899999998887654
No 380
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=67.81 E-value=1.9e+02 Score=31.44 Aligned_cols=45 Identities=18% Similarity=0.154 Sum_probs=27.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHHhcC-------CCChhhHHHHHHHHhcChhhH
Q 010837 221 TSMISGFMSQGFVEDAEEIFRKTV-------EKDIVVYNAMIEGYSISIETA 265 (499)
Q Consensus 221 ~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~ 265 (499)
-..++.+...+++.+|..+.++-. +.+...|..-+..+.+.-++.
T Consensus 698 L~~ir~~Ld~~~Y~~Af~~~RkhRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~ 749 (928)
T PF04762_consen 698 LAGIRKLLDAKDYKEAFELCRKHRIDLNLLYDHNPEQFLENIELFVEQIKDV 749 (928)
T ss_pred HHHHHHHHhhccHHHHHHHHHHhccccceEEECCHHHHHHHHHHHHHhcCCH
Confidence 345566788889999988887654 334444444444444433333
No 381
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=67.35 E-value=34 Score=28.13 Aligned_cols=28 Identities=14% Similarity=0.213 Sum_probs=14.4
Q ss_pred HHHhcCCHHHHHHHHHhCCCCCCHHHHH
Q 010837 395 LLGRAGSLEQALKFVLEMPEKPNSDVWA 422 (499)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 422 (499)
.|.+.|.+++|.+++++..+.|+.....
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~d~~~~~~r 147 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFSDPESQKLR 147 (200)
T ss_pred HHHhcCchHHHHHHHHHHhcCCCchhHH
Confidence 4455555555555555555544444333
No 382
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=67.31 E-value=18 Score=22.73 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=21.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 423 ALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
.+.-++.+.|++++|.+..+.+++..|.+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N 34 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDN 34 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCc
Confidence 34557788888888888888888888776
No 383
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=65.76 E-value=1.2e+02 Score=28.67 Aligned_cols=50 Identities=14% Similarity=0.272 Sum_probs=23.5
Q ss_pred HHhcCChHHHHHHHHhcCCC--C-h--hHHHHHHHHHH--hCCChhHHHHHHHHHHH
Q 010837 294 YAKCGKIDDARRVFDHMQQK--N-V--FTWTSMIDGYG--KNGNPNQALELFCMMQE 343 (499)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~~~--~-~--~~~~~l~~~~~--~~g~~~~a~~~~~~m~~ 343 (499)
+...+++..|.++|+.+.+. + . ..+..+..+|. ..-++++|.+.++....
T Consensus 141 l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 141 LFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33556666666666555431 1 1 12333333332 24455556665555544
No 384
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=65.41 E-value=16 Score=31.44 Aligned_cols=86 Identities=10% Similarity=-0.003 Sum_probs=67.3
Q ss_pred HHhcCCHHHHHHHHHhCCC-CCCHH-HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHH
Q 010837 396 LGRAGSLEQALKFVLEMPE-KPNSD-VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVT 473 (499)
Q Consensus 396 ~~~~~~~~~a~~~~~~~~~-~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 473 (499)
|....+++.|+.-|.+... .|+.. .|..=+..+.+.++++.+..-.+++++..+.. ......+...+.....+++|+
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~-vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNL-VKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHH-HHHHHHHHHHHHhhccccHHH
Confidence 3344567777777766554 67774 45566667888999999999999999888877 778888999999999999999
Q ss_pred HHHHHHHhC
Q 010837 474 ELREKMKLR 482 (499)
Q Consensus 474 ~~~~~~~~~ 482 (499)
..+.+..+.
T Consensus 99 ~~Lqra~sl 107 (284)
T KOG4642|consen 99 KVLQRAYSL 107 (284)
T ss_pred HHHHHHHHH
Confidence 999987443
No 385
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=65.29 E-value=13 Score=24.31 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=14.0
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 456 YVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 456 ~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
...++.+|...|++++|.++++++.
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3455566666666666666665554
No 386
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=65.06 E-value=56 Score=31.00 Aligned_cols=56 Identities=13% Similarity=0.016 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCC----------CCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010837 390 ACMVDLLGRAGSLEQALKFVLEMPEK----------PNSDVWAALLSSCRLHDDVEMANIAANEIF 445 (499)
Q Consensus 390 ~~l~~~~~~~~~~~~a~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (499)
-.|++.++-.|++..|+++++.+.-. -.+.++-.+.-+|.-.+++.+|.+.|...+
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455556666666666666655431 122344455555666666666666665543
No 387
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=64.51 E-value=1.6e+02 Score=29.63 Aligned_cols=77 Identities=10% Similarity=-0.036 Sum_probs=38.2
Q ss_pred chhHHHHHHHHHHcCCCCchhHHHH--HHHH-HHhCCChhHHHHHHHhccC-------C-ChHhHHHHHHHHHhCC----
Q 010837 167 RNLGRMVHAQILKCDVKADDVLYTA--LVDS-YVKGGKTSYARIVFDMMLE-------K-NVICSTSMISGFMSQG---- 231 (499)
Q Consensus 167 ~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~-~~~~g~~~~A~~~~~~~~~-------~-~~~~~~~l~~~~~~~g---- 231 (499)
...+..+++...+.|.. ....... ...+ +....|++.|+.+|+...+ . .....+-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~ 306 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEK 306 (552)
T ss_pred hhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCcc
Confidence 34566667666666521 1111111 1122 3455677778777777644 1 2334445555555533
Q ss_pred -CHHHHHHHHHhcC
Q 010837 232 -FVEDAEEIFRKTV 244 (499)
Q Consensus 232 -~~~~a~~~~~~~~ 244 (499)
+.+.|..++.+..
T Consensus 307 ~d~~~A~~~~~~aA 320 (552)
T KOG1550|consen 307 IDYEKALKLYTKAA 320 (552)
T ss_pred ccHHHHHHHHHHHH
Confidence 3444555555443
No 388
>PHA02875 ankyrin repeat protein; Provisional
Probab=64.37 E-value=1.2e+02 Score=29.17 Aligned_cols=170 Identities=12% Similarity=0.064 Sum_probs=74.7
Q ss_pred CCCChhhHHHHHHHHHHhCCCCChHH--HHHHHHHHHcCCChhHHHHHhccCCCCChH--HHHHHHHHHHhCCChhhHHH
Q 010837 57 NSDTPFYGLKIHAHITKTGVKPNTNI--SIKLLILHLKCGALKYAGQMFDELPQRTLS--AYNYMIAGYLKNGQVEESLS 132 (499)
Q Consensus 57 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~ 132 (499)
..|+.+. .+.+.+.|..++... ....+...++.|+.+-+..+++.-..++.. .....+...++.|+.+.+..
T Consensus 11 ~~g~~~i----v~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~ 86 (413)
T PHA02875 11 LFGELDI----ARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEE 86 (413)
T ss_pred HhCCHHH----HHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHH
Confidence 4455543 444445666555432 223444555677777666666553333221 11223445556777655444
Q ss_pred HHHHHHHcCCCCCh----hhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhH--HHHHHHHHHhCCChhHHH
Q 010837 133 LVRKLVSSGERPDG----YTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVL--YTALVDSYVKGGKTSYAR 206 (499)
Q Consensus 133 ~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~ 206 (499)
+++ .|...+. .-.+.+..+ ...+.. ++.+.+.+.|..|+... -.+.+...+..|+.+-+.
T Consensus 87 Ll~----~~~~~~~~~~~~g~tpL~~A------~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~ 152 (413)
T PHA02875 87 LLD----LGKFADDVFYKDGMTPLHLA------TILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIE 152 (413)
T ss_pred HHH----cCCcccccccCCCCCHHHHH------HHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHH
Confidence 443 3321111 111122222 222222 34455555665554321 123344455666666555
Q ss_pred HHHHhccCC---ChHhHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 010837 207 IVFDMMLEK---NVICSTSMISGFMSQGFVEDAEEIFRKTVE 245 (499)
Q Consensus 207 ~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 245 (499)
.+++.-... |..-++. +...+..|+.+-+.-+++....
T Consensus 153 ~Ll~~g~~~~~~d~~g~Tp-L~~A~~~g~~eiv~~Ll~~ga~ 193 (413)
T PHA02875 153 LLIDHKACLDIEDCCGCTP-LIIAMAKGDIAICKMLLDSGAN 193 (413)
T ss_pred HHHhcCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHHhCCCC
Confidence 555443322 1111222 2233445565555555554443
No 389
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=63.78 E-value=95 Score=26.64 Aligned_cols=96 Identities=16% Similarity=0.084 Sum_probs=49.5
Q ss_pred CCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC---ChhHH--HHHHHHHHhcCCHHHHHHHHHhCCC---CCC
Q 010837 346 VQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP---KMEHY--ACMVDLLGRAGSLEQALKFVLEMPE---KPN 417 (499)
Q Consensus 346 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p---~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~---~~~ 417 (499)
+.+...-++.|+--|.-...+.+|...|..-. |+.| +...+ ..-|......|++++|++.....-. .-|
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~---~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES---GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc---CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 45555556666555544444555555554322 5554 22222 3345566777888888777776654 123
Q ss_pred HHHHHHH--HHH--HhhcCCHHHHHHHHHHH
Q 010837 418 SDVWAAL--LSS--CRLHDDVEMANIAANEI 444 (499)
Q Consensus 418 ~~~~~~l--~~~--~~~~~~~~~a~~~~~~~ 444 (499)
...+-.| .+. ..+.|..++|+++.+.-
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2222222 222 34566667776666543
No 390
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=63.55 E-value=50 Score=23.33 Aligned_cols=66 Identities=14% Similarity=0.074 Sum_probs=39.7
Q ss_pred HHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHH
Q 010837 170 GRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAE 237 (499)
Q Consensus 170 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 237 (499)
+.+++..+.+.|+ .+......+-..-...|+.+.|.++++.++ ++...+..++.++-..|.-+-|.
T Consensus 21 ~~~v~d~ll~~~i-lT~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA~ 86 (88)
T cd08819 21 TRDVCDKCLEQGL-LTEEDRNRIEAATENHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELAR 86 (88)
T ss_pred HHHHHHHHHhcCC-CCHHHHHHHHHhccccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhhh
Confidence 4455555565553 222222222222235577888888888888 77777777888777777655554
No 391
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=63.08 E-value=1e+02 Score=26.71 Aligned_cols=50 Identities=16% Similarity=0.248 Sum_probs=37.3
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhc
Q 010837 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466 (499)
Q Consensus 415 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 466 (499)
.|.+.....++..|.. +++++|.+++.++.+.|..| ......+.+++-..
T Consensus 236 ~PhP~~v~~ml~~~~~-~~~~~A~~il~~lw~lgysp-~Dii~~~FRv~K~~ 285 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACLK-RNIDEALKILAELWKLGYSP-EDIITTLFRVVKNM 285 (333)
T ss_pred CCChHHHHHHHHHHHh-ccHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhc
Confidence 4777777777776654 68889999999999999888 66677776666444
No 392
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=62.94 E-value=36 Score=25.30 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHH
Q 010837 317 TWTSMIDGYGKNGNPNQALELFCMMQE 343 (499)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (499)
-|..++..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 577777788888888888888887766
No 393
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=62.74 E-value=1.2e+02 Score=27.29 Aligned_cols=62 Identities=8% Similarity=0.081 Sum_probs=43.1
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCCCchhHHHHHHHHhcCChHHHHHHH
Q 010837 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKL-NANDRPGAYVALSNTLAAAGKWDSVTELR 476 (499)
Q Consensus 415 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 476 (499)
.++..+...++..++..+++.+-.++|+..... ++..+...|..++....+.|+..-..+++
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence 466667777777777777777777777776665 56666777777777777777755444443
No 394
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=62.72 E-value=24 Score=34.64 Aligned_cols=95 Identities=16% Similarity=0.106 Sum_probs=51.4
Q ss_pred cCcHHHHHHHHHHchHhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHH
Q 010837 363 AGLVDKGREIFESMERDYSMKP--KMEHYACMVDLLGRAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMAN 438 (499)
Q Consensus 363 ~~~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 438 (499)
.|+...|.+.+.... ...| .-+....|.....+.|...+|-.++.+... .-...++..+.+++....+.+.|+
T Consensus 620 ~gn~~~a~~cl~~a~---~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 620 VGNSTFAIACLQRAL---NLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred cCCcHHHHHHHHHHh---ccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHH
Confidence 456666666655554 3333 112233344445555555556555554433 123345556666666667777777
Q ss_pred HHHHHHHhcCCCCCCchhHHHHH
Q 010837 439 IAANEIFKLNANDRPGAYVALSN 461 (499)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~~l~~ 461 (499)
+.|+++.+..+.. +..-+.|..
T Consensus 697 ~~~~~a~~~~~~~-~~~~~~l~~ 718 (886)
T KOG4507|consen 697 EAFRQALKLTTKC-PECENSLKL 718 (886)
T ss_pred HHHHHHHhcCCCC-hhhHHHHHH
Confidence 7777776666655 444444443
No 395
>PF15469 Sec5: Exocyst complex component Sec5
Probab=62.20 E-value=30 Score=28.72 Aligned_cols=117 Identities=14% Similarity=0.116 Sum_probs=63.3
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCC---CC--CHHHHHHHHHH
Q 010837 353 FLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPE---KP--NSDVWAALLSS 427 (499)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~--~~~~~~~l~~~ 427 (499)
+..++..-.+..++..+..++++..--+ ..-.-+.-+.+.|+++.++..|.++.. +. ....+..+.
T Consensus 60 ~~pll~~~~k~~~l~~~l~~l~r~~flF-------~LP~~L~~~i~~~dy~~~i~dY~kak~l~~~~~~~~~vf~~v~-- 130 (182)
T PF15469_consen 60 FKPLLERREKADKLRNALEFLQRNRFLF-------NLPSNLRECIKKGDYDQAINDYKKAKSLFEKYKQQVPVFQKVW-- 130 (182)
T ss_pred HHHHHccHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhhhhHHHHHHHH--
Confidence 4444444344445555555555554221 122345556788999999888887765 11 222333222
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCcccccccc
Q 010837 428 CRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVGT 495 (499)
Q Consensus 428 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 495 (499)
.++..+.+.+.. ..|..|... ....++..+++..+.+.+..+||.+.|+.-
T Consensus 131 -------~eve~ii~~~r~-------~l~~~L~~~---~~s~~~~~~~i~~Ll~L~~~~dPi~~~l~~ 181 (182)
T PF15469_consen 131 -------SEVEKIIEEFRE-------KLWEKLLSP---PSSQEEFLKLIRKLLELNVEEDPIWYWLES 181 (182)
T ss_pred -------HHHHHHHHHHHH-------HHHHHHhCC---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHc
Confidence 112222111111 011111110 156788889999999999999999999863
No 396
>PRK12798 chemotaxis protein; Reviewed
Probab=62.07 E-value=1.5e+02 Score=28.24 Aligned_cols=186 Identities=17% Similarity=0.233 Sum_probs=119.2
Q ss_pred cCChHHHHHHHHhcCC----CChhHHHHHHHHH-HhCCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHcccCcHH
Q 010837 297 CGKIDDARRVFDHMQQ----KNVFTWTSMIDGY-GKNGNPNQALELFCMMQECCVQPNY----VTFLGALSACGHAGLVD 367 (499)
Q Consensus 297 ~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~-~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~ 367 (499)
.|+.+++.+.+..+.. +....|-.|+.+- ....+..+|+++|+...- ..|.. .....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 6888888888888764 2445566666554 345688899999988765 24433 33444455667889999
Q ss_pred HHHHHHHHchHhcCCCCChhHH-HHHHHHHHhc---CCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 010837 368 KGREIFESMERDYSMKPKMEHY-ACMVDLLGRA---GSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANE 443 (499)
Q Consensus 368 ~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 443 (499)
++..+-....+.+...|-..-| ..+...+.+. ...+.-..++..|...--...|..+.+.-...|+.+.|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 8888777777666666643333 3333333333 34455566666666534456888888999999999999888888
Q ss_pred HHhcCCCCCCchhHHHHHHHH-----hcCChHHHHHHHHHHHhCCCcc
Q 010837 444 IFKLNANDRPGAYVALSNTLA-----AAGKWDSVTELREKMKLRGVLK 486 (499)
Q Consensus 444 ~~~~~~~~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~~~~~~~~ 486 (499)
........ ..-...+..|. -..+++++.+.+..+-...+.+
T Consensus 283 A~~L~~~~--~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~~ 328 (421)
T PRK12798 283 ALKLADPD--SADAARARLYRGAALVASDDAESALEELSQIDRDKLSE 328 (421)
T ss_pred HHHhccCC--CcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCCh
Confidence 88765332 33334444443 2345777777776665544443
No 397
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=61.71 E-value=8.3 Score=36.59 Aligned_cols=92 Identities=15% Similarity=0.159 Sum_probs=59.3
Q ss_pred HHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHH-HHHHHHhcCCHHHHHHHHHhCCC-CCC-HHHHHHHHHHHhhcCC
Q 010837 357 LSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC-MVDLLGRAGSLEQALKFVLEMPE-KPN-SDVWAALLSSCRLHDD 433 (499)
Q Consensus 357 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~-~~~-~~~~~~l~~~~~~~~~ 433 (499)
+....+.+.++.|..++.+++ .+.|+...|-+ =..++.+.+++..|+.=+.++.+ .|+ ...|..=..+|...+.
T Consensus 11 an~~l~~~~fd~avdlysKaI---~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAI---ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHH---hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 445566778888888888888 55775554433 23667788888888777766665 232 2334444455556667
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 010837 434 VEMANIAANEIFKLNAND 451 (499)
Q Consensus 434 ~~~a~~~~~~~~~~~~~~ 451 (499)
+.+|...|+......|..
T Consensus 88 ~~~A~~~l~~~~~l~Pnd 105 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPND 105 (476)
T ss_pred HHHHHHHHHHhhhcCcCc
Confidence 777777777766666554
No 398
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=61.47 E-value=32 Score=28.79 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCC
Q 010837 415 KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNA 449 (499)
Q Consensus 415 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (499)
.|+..+|..++.++...|+.++|.+..+++...-|
T Consensus 141 ~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 141 RPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 68888888888888888888888888888887776
No 399
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=61.40 E-value=19 Score=18.98 Aligned_cols=29 Identities=10% Similarity=0.131 Sum_probs=17.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCchhHHHHH
Q 010837 432 DDVEMANIAANEIFKLNANDRPGAYVALSN 461 (499)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 461 (499)
|+.+.|..+|++++...+.. ...|...+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~-~~~W~~y~~ 29 (33)
T smart00386 1 GDIERARKIYERALEKFPKS-VELWLKYAE 29 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCC-hHHHHHHHH
Confidence 45666777777777666543 555555544
No 400
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=60.67 E-value=32 Score=21.01 Aligned_cols=34 Identities=24% Similarity=0.297 Sum_probs=22.8
Q ss_pred HHhCCChhhHHHHHHHHHHcCCCCChhhHHHHhh
Q 010837 121 YLKNGQVEESLSLVRKLVSSGERPDGYTFSMILK 154 (499)
Q Consensus 121 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 154 (499)
..+.|-..++..++++|.+.|..-+...|..+++
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 4456666677777777777777666666666654
No 401
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=60.53 E-value=1.4e+02 Score=27.41 Aligned_cols=110 Identities=15% Similarity=0.031 Sum_probs=66.3
Q ss_pred HHHHHHHHHHchHhcCC---CCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 010837 366 VDKGREIFESMERDYSM---KPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAAN 442 (499)
Q Consensus 366 ~~~a~~~~~~~~~~~~~---~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 442 (499)
.+.|.+.|+.......- ..+......++....+.|..+.-..+++.....++...-..++.+.+...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56778888887743111 335556666777777778776666666666666677788888888888888888888888
Q ss_pred HHHhcC-CCCCCchhHHHHHHHHhcCCh--HHHHHHHH
Q 010837 443 EIFKLN-ANDRPGAYVALSNTLAAAGKW--DSVTELRE 477 (499)
Q Consensus 443 ~~~~~~-~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~ 477 (499)
.+...+ +.+ .. ...++..+...+.. +.+.+.++
T Consensus 226 ~~l~~~~v~~-~d-~~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 226 LLLSNDKVRS-QD-IRYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHCTSTS-T-TT-HHHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHcCCccccc-HH-HHHHHHHHhcCChhhHHHHHHHHH
Confidence 888854 333 34 34444444433333 55555443
No 402
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=60.44 E-value=1.3e+02 Score=27.03 Aligned_cols=109 Identities=11% Similarity=0.099 Sum_probs=65.7
Q ss_pred CHHHHHHHHHhcC-----CCChhhHHHHHHHHhc-ChhhHHHHHHHHHHHHH-cccCCCchhHHHHHHHHHhcCChHHHH
Q 010837 232 FVEDAEEIFRKTV-----EKDIVVYNAMIEGYSI-SIETARKALEVHCQLIK-NVFFEDVKLGSALVDMYAKCGKIDDAR 304 (499)
Q Consensus 232 ~~~~a~~~~~~~~-----~~~~~~~~~ll~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~ 304 (499)
.+.+|+++|+... -.|......+++.... .......-.++.+.+.. .+..++..+...++..++..+++..-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 3556667776322 2244555555555543 22222222233333332 245567777778888888888888888
Q ss_pred HHHHhcCC-----CChhHHHHHHHHHHhCCChhHHHHHHHH
Q 010837 305 RVFDHMQQ-----KNVFTWTSMIDGYGKNGNPNQALELFCM 340 (499)
Q Consensus 305 ~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (499)
++++.... .|...|..+|......|+..-..++.++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 88876553 4777888888888888886655555443
No 403
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.41 E-value=2.1e+02 Score=29.58 Aligned_cols=140 Identities=14% Similarity=0.135 Sum_probs=68.1
Q ss_pred HHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCC-CChHHHHHHHHHHHhCCCh
Q 010837 49 PSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQ-RTLSAYNYMIAGYLKNGQV 127 (499)
Q Consensus 49 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~ 127 (499)
...|..+...|++++|-...-.|.. -+..-|...+..+...++......++=.-+. -+...|..++..+.. .+.
T Consensus 396 ~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~ 470 (846)
T KOG2066|consen 396 KTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDV 470 (846)
T ss_pred HHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhccccccchhhccCCCCCcccCchHHHHHHHHHHH-HHH
Confidence 3344444445555555444444432 2333444444444444444333222222111 256689988888876 222
Q ss_pred hhHHHHHHHHHHcCCCCChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHH
Q 010837 128 EESLSLVRKLVSSGERPDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARI 207 (499)
Q Consensus 128 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 207 (499)
..+++...+. +++...-..++.+. . .++.+. .+ +...-..|+..|...+++..|.+
T Consensus 471 ---~~F~e~i~~W--p~~Lys~l~iisa~-------~----------~q~~q~-Se-~~~L~e~La~LYl~d~~Y~~Al~ 526 (846)
T KOG2066|consen 471 ---KGFLELIKEW--PGHLYSVLTIISAT-------E----------PQIKQN-SE-STALLEVLAHLYLYDNKYEKALP 526 (846)
T ss_pred ---HHHHHHHHhC--ChhhhhhhHHHhhc-------c----------hHHHhh-cc-chhHHHHHHHHHHHccChHHHHH
Confidence 2233333322 34443333333332 0 111111 11 11222338889999999999999
Q ss_pred HHHhccCCCh
Q 010837 208 VFDMMLEKNV 217 (499)
Q Consensus 208 ~~~~~~~~~~ 217 (499)
++-...+.++
T Consensus 527 ~ylklk~~~v 536 (846)
T KOG2066|consen 527 IYLKLQDKDV 536 (846)
T ss_pred HHHhccChHH
Confidence 9988877643
No 404
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=60.11 E-value=1.5e+02 Score=27.79 Aligned_cols=100 Identities=15% Similarity=0.193 Sum_probs=65.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHH------------HHHHHhhcCCHHHHHHHHHHHHhcCCCCC-----
Q 010837 390 ACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAA------------LLSSCRLHDDVEMANIAANEIFKLNANDR----- 452 (499)
Q Consensus 390 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----- 452 (499)
..|...+-..|+.++|..++.+..- .||.+ -++.|...+|+-.|.-+-+++...-++.+
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~V----ETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~~~~l 210 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQV----ETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPDVQEL 210 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcch----hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCccHHHH
Confidence 4466667778888888888776542 33332 24567778888888777777665544431
Q ss_pred -CchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCcccccc
Q 010837 453 -PGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWV 493 (499)
Q Consensus 453 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 493 (499)
...|..+++.....+.+=++-+.++.....|......-.|+
T Consensus 211 KlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~d~~kw~ 252 (439)
T KOG1498|consen 211 KLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKEDPEKWI 252 (439)
T ss_pred HHHHHHHHHHhcccccchhhHHHHHHHHhcccccccChhhhh
Confidence 23466777777777788788888887777665544333444
No 405
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=59.02 E-value=39 Score=24.08 Aligned_cols=55 Identities=20% Similarity=0.085 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-CCchhHHHHHHHHhcCChH
Q 010837 416 PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND-RPGAYVALSNTLAAAGKWD 470 (499)
Q Consensus 416 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 470 (499)
.|...-..+...+...|++++|++.+-.+++.++.. +...-..++.++...|.-+
T Consensus 20 ~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 20 DDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 355677778888999999999999998888876655 3556678888888887744
No 406
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=59.00 E-value=2.2e+02 Score=29.23 Aligned_cols=49 Identities=4% Similarity=-0.098 Sum_probs=31.5
Q ss_pred CcchHHHHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcC
Q 010837 44 TATSLPSALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKC 93 (499)
Q Consensus 44 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (499)
+....-.+|-.|.|.|++++|.++.....+. .......+...+..|...
T Consensus 110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CCCccHHHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 4445667777888888888888888544433 345555666667777654
No 407
>PF12069 DUF3549: Protein of unknown function (DUF3549); InterPro: IPR021936 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 340 amino acids in length. This protein has a conserved LDE sequence motif.
Probab=58.35 E-value=1.5e+02 Score=27.30 Aligned_cols=132 Identities=11% Similarity=0.120 Sum_probs=71.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhH-HHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHH
Q 010837 289 ALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQ-ALELFCMMQECCVQPNYVTFLGALSACGHAGLVD 367 (499)
Q Consensus 289 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 367 (499)
-+.+.+++.++.+.+..+-+.+..-......++..++-...=.+. +..+.+.+... ||......++++.+......
T Consensus 171 GIAD~~aRl~~~~~~~~l~~al~~lP~~vl~aL~~~LEh~~l~~~l~~~l~~~~~~~---~d~~~~~a~lRAls~~~~~~ 247 (340)
T PF12069_consen 171 GIADICARLDQEDNAQLLRKALPHLPPEVLYALCGCLEHQPLPDKLAEALLERLEQA---PDLELLSALLRALSSAPASD 247 (340)
T ss_pred HHHHHHHHhcccchHHHHHHHHhhCChHHHHHHHHHhcCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHcCCCchh
Confidence 356777888777776666666665444555556555544443333 33444444433 88888888888888777666
Q ss_pred HHHHHHHHchHhcCCCCChhHHHHHH-HHHHhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 010837 368 KGREIFESMERDYSMKPKMEHYACMV-DLLGRAGSLEQALKFVLEMPEKPNSDVWAAL 424 (499)
Q Consensus 368 ~a~~~~~~~~~~~~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l 424 (499)
.....+..+..+ ....+..+...+. ++.....+.+.+..+++++-..+|...|+.+
T Consensus 248 ~~~~~i~~~L~~-~~~~~~e~Li~IAgR~W~~L~d~~~l~~fle~LA~~~~~~lF~ql 304 (340)
T PF12069_consen 248 LVAILIDALLQS-PRLCHPEVLIAIAGRCWQWLKDPQLLRLFLERLAQQDDQALFNQL 304 (340)
T ss_pred HHHHHHHHHhcC-cccCChHHHHHHHhcCchhcCCHHHHHHHHHHHHcccHHHHHHHH
Confidence 666656666633 2222333322222 2222234444445555544443333344433
No 408
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=58.07 E-value=28 Score=31.59 Aligned_cols=81 Identities=12% Similarity=0.097 Sum_probs=39.8
Q ss_pred HHHhcCCHHHHHHHHHhCCC----CC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCC
Q 010837 395 LLGRAGSLEQALKFVLEMPE----KP--NSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGK 468 (499)
Q Consensus 395 ~~~~~~~~~~a~~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 468 (499)
-|.+..++..|...|.+... .| +...|+.-..+-...|++..|+.-...++..+|.. ...|..=..++....+
T Consensus 90 ~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h-~Ka~~R~Akc~~eLe~ 168 (390)
T KOG0551|consen 90 EYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTH-LKAYIRGAKCLLELER 168 (390)
T ss_pred HHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcch-hhhhhhhhHHHHHHHH
Confidence 34455555555555555443 12 22334444444444555555555555555555555 4555555555555555
Q ss_pred hHHHHHHH
Q 010837 469 WDSVTELR 476 (499)
Q Consensus 469 ~~~A~~~~ 476 (499)
+++|....
T Consensus 169 ~~~a~nw~ 176 (390)
T KOG0551|consen 169 FAEAVNWC 176 (390)
T ss_pred HHHHHHHH
Confidence 44444433
No 409
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=57.82 E-value=72 Score=23.30 Aligned_cols=88 Identities=10% Similarity=0.074 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHH
Q 010837 264 TARKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQE 343 (499)
Q Consensus 264 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (499)
..++|..+-+.+...+-. ...+--.-+..+...|++++|..+.+...-||...|.++-. .+.|-.++...-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 334555555555444322 11111122344667788888888888888888888876644 466777777777777777
Q ss_pred cCCCCCHHHHHH
Q 010837 344 CCVQPNYVTFLG 355 (499)
Q Consensus 344 ~~~~p~~~~~~~ 355 (499)
.| .|....|..
T Consensus 97 sg-~p~lq~Faa 107 (115)
T TIGR02508 97 SG-DPRLQTFVA 107 (115)
T ss_pred CC-CHHHHHHHH
Confidence 66 555555543
No 410
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=57.82 E-value=36 Score=29.92 Aligned_cols=52 Identities=23% Similarity=0.170 Sum_probs=26.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCCC--------CCCHHHHHHHHHHHhhcCCHHHHHHH
Q 010837 389 YACMVDLLGRAGSLEQALKFVLEMPE--------KPNSDVWAALLSSCRLHDDVEMANIA 440 (499)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~ 440 (499)
...+...|.+.|++++|.++|+.+.. .+...+...+..++.+.|+.+....+
T Consensus 181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 33455566666777777776666532 12223333444444555555544443
No 411
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=57.11 E-value=12 Score=24.41 Aligned_cols=23 Identities=13% Similarity=0.007 Sum_probs=11.0
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHH
Q 010837 422 AALLSSCRLHDDVEMANIAANEI 444 (499)
Q Consensus 422 ~~l~~~~~~~~~~~~a~~~~~~~ 444 (499)
..++.++.+.|++++|.+.++++
T Consensus 27 LqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 27 LQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 34445555555555555554444
No 412
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=56.99 E-value=21 Score=31.94 Aligned_cols=44 Identities=23% Similarity=0.299 Sum_probs=34.9
Q ss_pred CChH-HHHHHHHHHHhCCChhhHHHHHHHHHHcCCCCChhhHHHH
Q 010837 109 RTLS-AYNYMIAGYLKNGQVEESLSLVRKLVSSGERPDGYTFSMI 152 (499)
Q Consensus 109 ~~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 152 (499)
++.. -|+.-|....+.||+++|+.++++.++.|+.--..+|-..
T Consensus 254 ~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 254 NDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 3444 4789999999999999999999999999976555555433
No 413
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=56.88 E-value=63 Score=24.03 Aligned_cols=27 Identities=26% Similarity=0.479 Sum_probs=24.6
Q ss_pred HHHHHHHHHHhCCChhhHHHHHHHHHH
Q 010837 113 AYNYMIAGYLKNGQVEESLSLVRKLVS 139 (499)
Q Consensus 113 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 139 (499)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 488899999999999999999999876
No 414
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=56.84 E-value=14 Score=28.37 Aligned_cols=32 Identities=25% Similarity=0.584 Sum_probs=24.5
Q ss_pred hCCChhhHHHHHHHHHHcCCCCChhhHHHHhhhc
Q 010837 123 KNGQVEESLSLVRKLVSSGERPDGYTFSMILKAS 156 (499)
Q Consensus 123 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 156 (499)
..|.-..|..+|++|++.|-+||. |+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 346677899999999999988874 66666553
No 415
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=56.70 E-value=1.6e+02 Score=27.09 Aligned_cols=115 Identities=13% Similarity=0.051 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCC-ChhHHHHHHHHHHh---cCCHHHHH
Q 010837 331 PNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKP-KMEHYACMVDLLGR---AGSLEQAL 406 (499)
Q Consensus 331 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~---~~~~~~a~ 406 (499)
.+.-+.++++..+.+ +-+......++..+.+..+.++..+.|+++... .| +...|...++.... .-.++...
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~---~~~~~~LW~~yL~~~q~~~~~f~v~~~~ 122 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK---NPGSPELWREYLDFRQSNFASFTVSDVR 122 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHhccCcHHHHH
Confidence 456677888888773 455667777888888888888888889988844 34 56677777665433 23456666
Q ss_pred HHHHhCCC-------CC----------CH---HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCC
Q 010837 407 KFVLEMPE-------KP----------NS---DVWAALLSSCRLHDDVEMANIAANEIFKLNA 449 (499)
Q Consensus 407 ~~~~~~~~-------~~----------~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 449 (499)
.+|.+... .. .. ..+..+...+.+.|..+.|..+++.+++.+.
T Consensus 123 ~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 123 DVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 66655443 21 01 1222233334577888888888888888665
No 416
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=56.49 E-value=3e+02 Score=30.13 Aligned_cols=124 Identities=11% Similarity=0.064 Sum_probs=73.2
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHchHhcCCC-C-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHh
Q 010837 353 FLGALSACGHAGLVDKGREIFESMERDYSMK-P-KMEHYACMVDLLGRAGSLEQALKFVLEMPE-KPNSDVWAALLSSCR 429 (499)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l~~~~~ 429 (499)
|..+++.+...+..+.+.++-..+.+..+.. | -..+++.+.+.....|.+-+|.+.+-.... .-.......++-.++
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlvivLf 1065 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIVLF 1065 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Confidence 5666777777788888877777766433221 2 244677788888888888888766554332 111235556666666
Q ss_pred hcCCHHH------------HHH-HHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHH
Q 010837 430 LHDDVEM------------ANI-AANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELR 476 (499)
Q Consensus 430 ~~~~~~~------------a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 476 (499)
.+|.++. ... +++..-+..+......|..|-..+...+++.+|-.++
T Consensus 1066 ecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~RkaatvM 1125 (1480)
T KOG4521|consen 1066 ECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATVM 1125 (1480)
T ss_pred hccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHHH
Confidence 6665443 333 2333333344443455666666667788888776544
No 417
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=56.18 E-value=89 Score=24.02 Aligned_cols=43 Identities=12% Similarity=0.146 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHcccCCCc-hhHHHHHHHHHhcCChHHHHHHHHh
Q 010837 267 KALEVHCQLIKNVFFEDV-KLGSALVDMYAKCGKIDDARRVFDH 309 (499)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~ 309 (499)
.+.++|..|..+|+-... ..|..-...+.+.|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 778888888888776543 4666667777788888888888764
No 418
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=56.00 E-value=2.1e+02 Score=28.01 Aligned_cols=109 Identities=12% Similarity=0.063 Sum_probs=66.7
Q ss_pred HHHHHHHHhcCCCChhHH-HHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH--cccCcHHHHHHHHHHch
Q 010837 301 DDARRVFDHMQQKNVFTW-TSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC--GHAGLVDKGREIFESME 377 (499)
Q Consensus 301 ~~a~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~ 377 (499)
+.....+..+..++..++ +.++.-+.+.|-..+|...+..+... .+|+...|..+++-- ..+-+...+..+|+.+.
T Consensus 445 ~~Ii~a~~s~~~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~ 523 (568)
T KOG2396|consen 445 DLIISALLSVIGADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRAL 523 (568)
T ss_pred HHHHHHHHHhcCCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHH
Confidence 334445555555655543 45666677778888888888888775 356666777666431 11223677778888888
Q ss_pred HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhC
Q 010837 378 RDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEM 412 (499)
Q Consensus 378 ~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 412 (499)
..+| .++..|-..+..=...|..+.+-.++.++
T Consensus 524 ~~fg--~d~~lw~~y~~~e~~~g~~en~~~~~~ra 556 (568)
T KOG2396|consen 524 REFG--ADSDLWMDYMKEELPLGRPENCGQIYWRA 556 (568)
T ss_pred HHhC--CChHHHHHHHHhhccCCCcccccHHHHHH
Confidence 7777 44445555554444666666655555443
No 419
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=55.84 E-value=2.8e+02 Score=29.57 Aligned_cols=27 Identities=22% Similarity=0.393 Sum_probs=23.5
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhcCC
Q 010837 219 CSTSMISGFMSQGFVEDAEEIFRKTVE 245 (499)
Q Consensus 219 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 245 (499)
-|..|+..|...|+.++|++++.+..+
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhc
Confidence 578889999999999999999988874
No 420
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=54.51 E-value=2.2e+02 Score=27.80 Aligned_cols=103 Identities=10% Similarity=0.021 Sum_probs=61.1
Q ss_pred ccCcHHHHHHHHHHch--HhcCCCCC-----hhHHHHHHHHHHhcCCHHHHHHHHHhCCC----------CC--------
Q 010837 362 HAGLVDKGREIFESME--RDYSMKPK-----MEHYACMVDLLGRAGSLEQALKFVLEMPE----------KP-------- 416 (499)
Q Consensus 362 ~~~~~~~a~~~~~~~~--~~~~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----------~~-------- 416 (499)
-.|++.+|.+++-..- +..|...+ ...||.|...+.+.|.+..+..+|.+... +|
T Consensus 252 ~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~ 331 (696)
T KOG2471|consen 252 AHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQ 331 (696)
T ss_pred HhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhc
Confidence 3466777766654321 11121111 11235555555566666666655555442 11
Q ss_pred --CH-HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhc
Q 010837 417 --NS-DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA 466 (499)
Q Consensus 417 --~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 466 (499)
.. .+|| +.-.|...|+.-.|.+.|.+....-... +..|..+..+|...
T Consensus 332 nks~eilYN-cG~~~Lh~grPl~AfqCf~~av~vfh~n-PrlWLRlAEcCima 382 (696)
T KOG2471|consen 332 NKSMEILYN-CGLLYLHSGRPLLAFQCFQKAVHVFHRN-PRLWLRLAECCIMA 382 (696)
T ss_pred ccchhhHHh-hhHHHHhcCCcHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHH
Confidence 11 2333 4456788899999999999988876666 89999999998754
No 421
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=54.12 E-value=49 Score=20.22 Aligned_cols=33 Identities=12% Similarity=0.043 Sum_probs=23.1
Q ss_pred HhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 010837 326 GKNGNPNQALELFCMMQECCVQPNYVTFLGALS 358 (499)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 358 (499)
.+.|-.+++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456667777777777777777777776666654
No 422
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=54.08 E-value=3.2e+02 Score=29.67 Aligned_cols=94 Identities=12% Similarity=0.035 Sum_probs=40.0
Q ss_pred CCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHH
Q 010837 312 QKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYAC 391 (499)
Q Consensus 312 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~ 391 (499)
++|...-...+.++...|..+.+...+..+.+ .++...-...+.++...+.. ++...+..+.. .|+..+-..
T Consensus 786 D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~---d~d~~VR~~Aa~aL~~l~~~-~a~~~L~~~L~----D~~~~VR~~ 857 (897)
T PRK13800 786 DPDPLVRAAALAALAELGCPPDDVAAATAALR---ASAWQVRQGAARALAGAAAD-VAVPALVEALT----DPHLDVRKA 857 (897)
T ss_pred CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhc---CCChHHHHHHHHHHHhcccc-chHHHHHHHhc----CCCHHHHHH
Confidence 45555555555555555554433333333332 23333334444555544432 23333333331 344444444
Q ss_pred HHHHHHhcCCHHHHHHHHHhCC
Q 010837 392 MVDLLGRAGSLEQALKFVLEMP 413 (499)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~ 413 (499)
.+.++.+.+....+...+....
T Consensus 858 A~~aL~~~~~~~~a~~~L~~al 879 (897)
T PRK13800 858 AVLALTRWPGDPAARDALTTAL 879 (897)
T ss_pred HHHHHhccCCCHHHHHHHHHHH
Confidence 4555544322223344443333
No 423
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=53.23 E-value=3.1e+02 Score=29.28 Aligned_cols=110 Identities=15% Similarity=0.104 Sum_probs=54.8
Q ss_pred HHHHHHHHHcCCChhHHHHHhccCCCCC--h-----HHHHHHHHHHHhCCCh--hhHHHHHHHHHHcCCC----------
Q 010837 83 SIKLLILHLKCGALKYAGQMFDELPQRT--L-----SAYNYMIAGYLKNGQV--EESLSLVRKLVSSGER---------- 143 (499)
Q Consensus 83 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~-----~~~~~li~~~~~~g~~--~~a~~~~~~m~~~g~~---------- 143 (499)
|..|+..|...|+.++|+++|......+ . ..+..+++.+-+.+.. +-.++.-++.......
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Confidence 5567777777777777777776665311 1 1233333333333332 3333333333222100
Q ss_pred ---CChhhHHHHhhhccccccCCcCcchhHHHHHHHHHHcCCCCchhHHHHHHHHHHh
Q 010837 144 ---PDGYTFSMILKASTCCRSNVPLPRNLGRMVHAQILKCDVKADDVLYTALVDSYVK 198 (499)
Q Consensus 144 ---p~~~~~~~ll~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 198 (499)
-....-..++.. ......+.+..+++.+....-.++....+.++..|+.
T Consensus 587 ~~~~~sis~~~Vl~~------l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 587 KQEAESISRDDVLNY------LKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred hhhhccCCHHHHHHH------hhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 001111223332 3444556667777777666555666677777776664
No 424
>PRK13342 recombination factor protein RarA; Reviewed
Probab=51.60 E-value=2.3e+02 Score=27.28 Aligned_cols=42 Identities=17% Similarity=0.261 Sum_probs=28.2
Q ss_pred HHHHHHHHHh---CCChhhHHHHHHHHHHcCCCCChhhHHHHhhh
Q 010837 114 YNYMIAGYLK---NGQVEESLSLVRKLVSSGERPDGYTFSMILKA 155 (499)
Q Consensus 114 ~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 155 (499)
+..+++++.+ .++.+.|+..+..|.+.|..|....-..+..+
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4445555544 57888899999999988877765544444444
No 425
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=51.58 E-value=2.3e+02 Score=27.24 Aligned_cols=28 Identities=14% Similarity=0.108 Sum_probs=22.1
Q ss_pred hHHHHHHHHHhCCCHHHHHHHHHhcCCC
Q 010837 219 CSTSMISGFMSQGFVEDAEEIFRKTVEK 246 (499)
Q Consensus 219 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 246 (499)
....+|+-|...|+..+..+.++.+--|
T Consensus 347 ~~~~IIqEYFlsgDt~Evi~~L~DLn~~ 374 (645)
T KOG0403|consen 347 DLTPIIQEYFLSGDTPEVIRSLRDLNLP 374 (645)
T ss_pred hhHHHHHHHHhcCChHHHHHHHHHcCCc
Confidence 4567888899999999998888877643
No 426
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=51.58 E-value=52 Score=23.58 Aligned_cols=24 Identities=29% Similarity=0.184 Sum_probs=16.0
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhc
Q 010837 424 LLSSCRLHDDVEMANIAANEIFKL 447 (499)
Q Consensus 424 l~~~~~~~~~~~~a~~~~~~~~~~ 447 (499)
+.......|+.++|.+.++++++.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 444456667777777777777653
No 427
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=50.71 E-value=1.3e+02 Score=29.86 Aligned_cols=97 Identities=12% Similarity=0.003 Sum_probs=55.1
Q ss_pred HhcCChHHHHHHHHhcCC--C--ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHH
Q 010837 295 AKCGKIDDARRVFDHMQQ--K--NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGR 370 (499)
Q Consensus 295 ~~~g~~~~a~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 370 (499)
...|+...|..++....- | .-+..-.|.+...+.|-.-.|..++.+..... ...+-++..+..++.-..+++.|+
T Consensus 618 r~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~ 696 (886)
T KOG4507|consen 618 RAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGAL 696 (886)
T ss_pred eecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHH
Confidence 345666677666665431 1 22223334455555566666666666655543 334456666677777777888888
Q ss_pred HHHHHchHhcCCCC-ChhHHHHHHHH
Q 010837 371 EIFESMERDYSMKP-KMEHYACMVDL 395 (499)
Q Consensus 371 ~~~~~~~~~~~~~p-~~~~~~~l~~~ 395 (499)
+.|+... ...| +..+-+.|...
T Consensus 697 ~~~~~a~---~~~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 697 EAFRQAL---KLTTKCPECENSLKLI 719 (886)
T ss_pred HHHHHHH---hcCCCChhhHHHHHHH
Confidence 8887777 2234 34444554443
No 428
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=50.35 E-value=62 Score=32.32 Aligned_cols=84 Identities=12% Similarity=0.050 Sum_probs=54.4
Q ss_pred HhcCCHHHHHHHHHhCCC--C------CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCC
Q 010837 397 GRAGSLEQALKFVLEMPE--K------PNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGK 468 (499)
Q Consensus 397 ~~~~~~~~a~~~~~~~~~--~------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 468 (499)
.+..++..+.++|..-.. . .-......|--+|....+.|.|.++++++.+.+++. +.+-..+..+....|.
T Consensus 365 F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~-~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 365 FKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQS-PLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcccc-HHHHHHHHHHHHHhcc
Confidence 455667777777654322 1 112344555556677778888888888888877776 5666666666777777
Q ss_pred hHHHHHHHHHHHh
Q 010837 469 WDSVTELREKMKL 481 (499)
Q Consensus 469 ~~~A~~~~~~~~~ 481 (499)
-++|..++.....
T Consensus 444 Se~AL~~~~~~~s 456 (872)
T KOG4814|consen 444 SEEALTCLQKIKS 456 (872)
T ss_pred hHHHHHHHHHHHh
Confidence 7778777766544
No 429
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=50.29 E-value=2e+02 Score=26.29 Aligned_cols=115 Identities=14% Similarity=0.101 Sum_probs=70.0
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHchHh---cCCCCChhHHHHHHHH-HH----hcCCHHHHHHHHHhCCC---CCCHH
Q 010837 351 VTFLGALSACGHAGLVDKGREIFESMERD---YSMKPKMEHYACMVDL-LG----RAGSLEQALKFVLEMPE---KPNSD 419 (499)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~p~~~~~~~l~~~-~~----~~~~~~~a~~~~~~~~~---~~~~~ 419 (499)
........-||+.|+.+.|.+.+++..++ .|.+.|+..+..=+.. |. -...+++|..++++--+ +....
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 34555667788889999888888766543 3555565544332222 22 23456677777777665 34456
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcC
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG 467 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 467 (499)
+|..+- |....++++|-.+|-+....--......|..++..-.-.|
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g 230 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITG 230 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHh
Confidence 776653 4455688888888877665444443566777766544433
No 430
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=50.13 E-value=36 Score=30.55 Aligned_cols=42 Identities=19% Similarity=0.238 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010837 316 FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGAL 357 (499)
Q Consensus 316 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll 357 (499)
.-|+.-|..-.+.||+++|+.++++.++.|..--..+|...+
T Consensus 258 ~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V 299 (303)
T PRK10564 258 SYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSV 299 (303)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHh
Confidence 346678888888888888888888888888765555554433
No 431
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=50.12 E-value=48 Score=24.57 Aligned_cols=43 Identities=14% Similarity=0.110 Sum_probs=31.7
Q ss_pred HHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcC
Q 010837 50 SALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKC 93 (499)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 93 (499)
+++..+.+....++|+++.+.|.+.| ..+....+.|-..+.+.
T Consensus 66 tViD~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr~~L~~k 108 (128)
T PF09868_consen 66 TVIDYLRRCKTDEEALEVINYLEKRG-EITPEEAKELRSILVKK 108 (128)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Confidence 45666677888899999999999998 67776666665554443
No 432
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=49.67 E-value=41 Score=28.85 Aligned_cols=54 Identities=20% Similarity=0.259 Sum_probs=26.1
Q ss_pred hcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 398 RAGSLEQALKFVLEMPE--KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 398 ~~~~~~~a~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
+.++.+.|.+++.++.+ +.....|-.+...-.+.|+.+.|.+.|++..+.+|+.
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 34445555555554444 2233444444444455555555555555555554444
No 433
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=49.13 E-value=1.6e+02 Score=24.65 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=15.8
Q ss_pred HHHHHHHhcCChHHHHHHHHhcC
Q 010837 289 ALVDMYAKCGKIDDARRVFDHMQ 311 (499)
Q Consensus 289 ~l~~~~~~~g~~~~a~~~~~~~~ 311 (499)
++|-.|-+.-++.+..++++.|.
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~ 159 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLH 159 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777664
No 434
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.80 E-value=3.5e+02 Score=28.59 Aligned_cols=51 Identities=14% Similarity=0.073 Sum_probs=32.6
Q ss_pred HHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcC
Q 010837 194 DSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244 (499)
Q Consensus 194 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 244 (499)
..|...|++++|.++-+.-+..-..++-.-...|.+.+++..|-++|.++.
T Consensus 366 k~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~ 416 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETL 416 (911)
T ss_pred HHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 457778888888877665522212233444455677778888888777764
No 435
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=48.26 E-value=1.5e+02 Score=30.50 Aligned_cols=172 Identities=18% Similarity=0.241 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHcccCCCc---hhHHHHHHHHHhcCChHHHHHHHHhcCC-CChh----------HHHHHHHHHHhCCChh
Q 010837 267 KALEVHCQLIKNVFFEDV---KLGSALVDMYAKCGKIDDARRVFDHMQQ-KNVF----------TWTSMIDGYGKNGNPN 332 (499)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~----------~~~~l~~~~~~~g~~~ 332 (499)
+-..++.+|..+--.|++ .+...++-.|....+++...++.+.+++ ||.. .|.--+.--.+-|+-+
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDRa 260 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDRA 260 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccHH
Confidence 444566677666544543 3455566777788888888888887765 3221 1222222223457788
Q ss_pred HHHHHHHHHHHcC--CCCCHHH-----HHHH--HHHHcccCcHHHHHHHHHHchHhcCCCCChhH---HHHHHHHH----
Q 010837 333 QALELFCMMQECC--VQPNYVT-----FLGA--LSACGHAGLVDKGREIFESMERDYSMKPKMEH---YACMVDLL---- 396 (499)
Q Consensus 333 ~a~~~~~~m~~~~--~~p~~~~-----~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~---~~~l~~~~---- 396 (499)
+|+...-.|.+.. +.||... |.-+ -..|...+..+.|.+.|++.- .+.|+... +..|+.+-
T Consensus 261 kAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~F 337 (1226)
T KOG4279|consen 261 KALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEHF 337 (1226)
T ss_pred HHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhhc
Confidence 8888877776543 5566542 2222 233556677888999988876 56675432 33333322
Q ss_pred -----------------HhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC
Q 010837 397 -----------------GRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNAND 451 (499)
Q Consensus 397 -----------------~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 451 (499)
++.|..++..++| |+.+| +.+-.-.+|+.+|.+.-+.|.+..+..
T Consensus 338 ens~Elq~IgmkLn~LlgrKG~leklq~YW-------dV~~y---~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 338 ENSLELQQIGMKLNSLLGRKGALEKLQEYW-------DVATY---FEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred cchHHHHHHHHHHHHHhhccchHHHHHHHH-------hHHHh---hhhhhhccCHHHHHHHHHHHhccCCce
Confidence 2222222222222 22222 334455688999999999998877643
No 436
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=47.87 E-value=2.6e+02 Score=26.86 Aligned_cols=226 Identities=13% Similarity=0.045 Sum_probs=92.0
Q ss_pred HHHHHhCCChhHHHHHHHhccC--CChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHHhcChhhHHHHHH
Q 010837 193 VDSYVKGGKTSYARIVFDMMLE--KNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGYSISIETARKALE 270 (499)
Q Consensus 193 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~ 270 (499)
++++...| ..+...+-.... .+...+.....++....+......+.+.+..++...-.....++... +.. .+..
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d~~~ev~~~aa~al~~~~~~~~~~~L~~~L~d~~~~vr~aaa~ALg~i-~~~-~a~~ 120 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEADEPGRVACAALALLAQEDALDLRSVLAVLQAGPEGLCAGIQAALGWL-GGR-QAEP 120 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhCCChhHHHHHHHHHhccCChHHHHHHHHHhcCCCHHHHHHHHHHHhcC-Cch-HHHH
Confidence 56666666 445554444332 22333333333333222222234444444455554555555555444 222 3333
Q ss_pred HHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 010837 271 VHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY 350 (499)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 350 (499)
.+..+.+. .++......+.++...+. +-...+..-+..++...-..-+.++...+.. .+...+..+.. .+|.
T Consensus 121 ~L~~~L~~---~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-~a~~~L~~al~---d~~~ 192 (410)
T TIGR02270 121 WLEPLLAA---SEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRR-LSESTLRLYLR---DSDP 192 (410)
T ss_pred HHHHHhcC---CChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-cchHHHHHHHc---CCCH
Confidence 33333321 233333334444443321 1122222223344555545555555554443 22223333322 3444
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 010837 351 VTFLGALSACGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNSDVWAALLSSCRL 430 (499)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~~~~ 430 (499)
..=...+.+....|. +.|...+...... ++......+...+... ..+++.+.+......++ +-...+.++.+
T Consensus 193 ~VR~aA~~al~~lG~-~~A~~~l~~~~~~----~g~~~~~~l~~~lal~-~~~~a~~~L~~ll~d~~--vr~~a~~AlG~ 264 (410)
T TIGR02270 193 EVRFAALEAGLLAGS-RLAWGVCRRFQVL----EGGPHRQRLLVLLAVA-GGPDAQAWLRELLQAAA--TRREALRAVGL 264 (410)
T ss_pred HHHHHHHHHHHHcCC-HhHHHHHHHHHhc----cCccHHHHHHHHHHhC-CchhHHHHHHHHhcChh--hHHHHHHHHHH
Confidence 444444555555555 4444444332211 2222222222222222 22255555555554333 33444555555
Q ss_pred cCCHHHHH
Q 010837 431 HDDVEMAN 438 (499)
Q Consensus 431 ~~~~~~a~ 438 (499)
.|+...+.
T Consensus 265 lg~p~av~ 272 (410)
T TIGR02270 265 VGDVEAAP 272 (410)
T ss_pred cCCcchHH
Confidence 55555433
No 437
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=47.11 E-value=27 Score=26.92 Aligned_cols=31 Identities=23% Similarity=0.258 Sum_probs=23.6
Q ss_pred hCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 010837 327 KNGNPNQALELFCMMQECCVQPNYVTFLGALSA 359 (499)
Q Consensus 327 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 359 (499)
..|.-..|..+|++|.+.|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 346677889999999999988876 4555554
No 438
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=47.06 E-value=2.3e+02 Score=26.17 Aligned_cols=81 Identities=12% Similarity=0.232 Sum_probs=48.5
Q ss_pred HHHHHHhcCCHHHHHHHHHhCCC------CCCHHHHH--HHHHHHhhcCCHHHHHHHHHHHHh-----cCCCCC-CchhH
Q 010837 392 MVDLLGRAGSLEQALKFVLEMPE------KPNSDVWA--ALLSSCRLHDDVEMANIAANEIFK-----LNANDR-PGAYV 457 (499)
Q Consensus 392 l~~~~~~~~~~~~a~~~~~~~~~------~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~-~~~~~ 457 (499)
++...-+.++.++|+++++++.+ .|+...|. ...+.+...||.+++.+.+.+..+ .++.++ ...|+
T Consensus 81 ~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 81 LLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 33444556677888888877765 35655543 344556677888888888877766 444442 23455
Q ss_pred HHHHHH-HhcCChHHH
Q 010837 458 ALSNTL-AAAGKWDSV 472 (499)
Q Consensus 458 ~l~~~~-~~~g~~~~A 472 (499)
.+..-| .+.|++..+
T Consensus 161 ~lssqYyk~~~d~a~y 176 (380)
T KOG2908|consen 161 SLSSQYYKKIGDFASY 176 (380)
T ss_pred HHHHHHHHHHHhHHHH
Confidence 554444 445665544
No 439
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=46.55 E-value=73 Score=20.03 Aligned_cols=30 Identities=20% Similarity=0.196 Sum_probs=16.3
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 010837 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352 (499)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 352 (499)
+.-++.+.|++++|.+..+.+.+ +.|+..-
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Q 36 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQ 36 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHH
Confidence 34455666666666666666665 3555443
No 440
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=46.45 E-value=79 Score=20.66 Aligned_cols=15 Identities=27% Similarity=0.375 Sum_probs=6.7
Q ss_pred hcCCHHHHHHHHHhC
Q 010837 398 RAGSLEQALKFVLEM 412 (499)
Q Consensus 398 ~~~~~~~a~~~~~~~ 412 (499)
..|++=+|-++++.+
T Consensus 11 n~g~f~EaHEvlE~~ 25 (62)
T PF03745_consen 11 NAGDFFEAHEVLEEL 25 (62)
T ss_dssp HTT-HHHHHHHHHHH
T ss_pred cCCCHHHhHHHHHHH
Confidence 344555555555443
No 441
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=46.36 E-value=90 Score=27.44 Aligned_cols=77 Identities=8% Similarity=-0.096 Sum_probs=50.8
Q ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc----CC-CCCCchhHHHHHHHHhcCChHHHHHHHH
Q 010837 404 QALKFVLEMPE-KPNSDVWAALLSSCRLHDDVEMANIAANEIFKL----NA-NDRPGAYVALSNTLAAAGKWDSVTELRE 477 (499)
Q Consensus 404 ~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 477 (499)
.|.+.|..... +-.......+..-|...|++++|.++|+.+... |. .....+...+..++.+.|+.++...+.=
T Consensus 163 ~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 163 KAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 45555554443 112233445667799999999999999998642 21 2224556678888889999998887665
Q ss_pred HHH
Q 010837 478 KMK 480 (499)
Q Consensus 478 ~~~ 480 (499)
++.
T Consensus 243 eLl 245 (247)
T PF11817_consen 243 ELL 245 (247)
T ss_pred HHh
Confidence 543
No 442
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=46.29 E-value=2e+02 Score=25.02 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=35.3
Q ss_pred HHhcCChHHHHHHHHh----------------cCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCH
Q 010837 294 YAKCGKIDDARRVFDH----------------MQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNY 350 (499)
Q Consensus 294 ~~~~g~~~~a~~~~~~----------------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 350 (499)
+...|+...|...++. ..+|.+.....++..|. .+++++|.+++.++.+.|+.|..
T Consensus 202 fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 202 FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 4455666666555443 33456666666666544 45778888888888887777644
No 443
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=46.00 E-value=1.2e+02 Score=28.52 Aligned_cols=25 Identities=20% Similarity=0.175 Sum_probs=12.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC
Q 010837 389 YACMVDLLGRAGSLEQALKFVLEMP 413 (499)
Q Consensus 389 ~~~l~~~~~~~~~~~~a~~~~~~~~ 413 (499)
+.-+...|..+|+++.|++.|.+..
T Consensus 153 ~~Dl~dhy~~cG~l~~Alr~YsR~R 177 (466)
T KOG0686|consen 153 LEDLGDHYLDCGQLDNALRCYSRAR 177 (466)
T ss_pred HHHHHHHHHHhccHHHHHhhhhhhh
Confidence 3344444555555555555555433
No 444
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=45.94 E-value=1.4e+02 Score=23.01 Aligned_cols=71 Identities=13% Similarity=0.205 Sum_probs=43.3
Q ss_pred HHHHHHHhCCC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCC-CchhHHHHHHHHhcCChHHHHHHHH
Q 010837 404 QALKFVLEMPE-KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDR-PGAYVALSNTLAAAGKWDSVTELRE 477 (499)
Q Consensus 404 ~a~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 477 (499)
++.+.|..... +.|..-...-+.-.-..++ ..++|+.|.+.++... +..|...+..+...|++.+|.++++
T Consensus 51 rc~~~f~~~~~YknD~RyLkiWi~ya~~~~d---p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 51 RCIRYFEDDERYKNDPRYLKIWLKYADNCDE---PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHhhhhhhhcCCHHHHHHHHHHHHhcCC---HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444333 4555443333322222233 5678888888766542 4557778888889999999999886
No 445
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=45.69 E-value=1.5e+02 Score=24.54 Aligned_cols=21 Identities=19% Similarity=0.449 Sum_probs=14.6
Q ss_pred HHHHcccCcHHHHHHHHHHch
Q 010837 357 LSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 357 l~~~~~~~~~~~a~~~~~~~~ 377 (499)
+..|.+.|.+++|.+++++..
T Consensus 118 V~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 118 VAVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHHHhcCchHHHHHHHHHHh
Confidence 445677777777777777766
No 446
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=45.68 E-value=94 Score=31.31 Aligned_cols=43 Identities=16% Similarity=0.219 Sum_probs=19.2
Q ss_pred HHHHHHHcCCChhHHHHHhccCCC------CChHHHHHHHHHHHhCCCh
Q 010837 85 KLLILHLKCGALKYAGQMFDELPQ------RTLSAYNYMIAGYLKNGQV 127 (499)
Q Consensus 85 ~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~ 127 (499)
+|+.+|...|++-.+.++++.+.. .=...||..|+...+.|.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf 81 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSF 81 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCc
Confidence 344444444554444444444331 1123445555555555543
No 447
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.58 E-value=2.8e+02 Score=27.60 Aligned_cols=35 Identities=14% Similarity=0.082 Sum_probs=24.5
Q ss_pred HHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 341 MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 341 m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
+.+.|+..+......++... .|+...|..+++.+.
T Consensus 191 l~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~i 225 (509)
T PRK14958 191 LKEENVEFENAALDLLARAA--NGSVRDALSLLDQSI 225 (509)
T ss_pred HHHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHH
Confidence 44567777777766666553 588888888887665
No 448
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.55 E-value=2.6e+02 Score=27.47 Aligned_cols=44 Identities=11% Similarity=-0.065 Sum_probs=29.9
Q ss_pred hHHHHHHHHH-HHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 332 NQALELFCMM-QECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 332 ~~a~~~~~~m-~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
+...+.++.. ...|+..+......+... ..|+...|..+++.+.
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~--S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIAKK--GDGSVRDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCChHHHHHHHHHHHH
Confidence 3444555544 445777777777666643 4589999999998865
No 449
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=45.12 E-value=2.6e+02 Score=29.05 Aligned_cols=45 Identities=9% Similarity=0.021 Sum_probs=31.5
Q ss_pred hhHHHHHHHHH-HHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 331 PNQALELFCMM-QECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 331 ~~~a~~~~~~m-~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
.++....+... ...|+..+......++... .|++..+..+++.+.
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqai 225 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAI 225 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 34445555444 4557788888887777654 589999999998776
No 450
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=44.97 E-value=85 Score=28.73 Aligned_cols=70 Identities=16% Similarity=0.173 Sum_probs=49.5
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhc---CCCCCCchh--HHHHHHHHhcCChHHHHHHHHHHHh-----CCCccCccccc
Q 010837 423 ALLSSCRLHDDVEMANIAANEIFKL---NANDRPGAY--VALSNTLAAAGKWDSVTELREKMKL-----RGVLKDTGCSW 492 (499)
Q Consensus 423 ~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~ 492 (499)
.++....+.+|.++|.++++++.+. .-.|++..| ...++++...|+..++.+.+++..+ .|+.|+.-.++
T Consensus 80 i~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~f 159 (380)
T KOG2908|consen 80 ILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSF 159 (380)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhH
Confidence 3445556667999999999999863 223333443 3566778899999999999999887 67777544333
No 451
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=44.69 E-value=1.9e+02 Score=24.39 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=9.9
Q ss_pred ChhHHHHHHHHHHhcCCHHHH
Q 010837 385 KMEHYACMVDLLGRAGSLEQA 405 (499)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a 405 (499)
|+..+.+|+..|.+.|+++.|
T Consensus 177 n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 177 NPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred CHHHHHHHHHHHHHhcchhhh
Confidence 444444444444444444443
No 452
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=44.14 E-value=2.4e+02 Score=25.35 Aligned_cols=116 Identities=14% Similarity=0.102 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHcccCcHHHHHHHHHHchHh---cCCCCChhHH-HHHHHHHHhcCCHHHHHHHHHhCCCC-------CCH
Q 010837 350 YVTFLGALSACGHAGLVDKGREIFESMERD---YSMKPKMEHY-ACMVDLLGRAGSLEQALKFVLEMPEK-------PNS 418 (499)
Q Consensus 350 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~ 418 (499)
...+..+..-|++.++.+.+.+..++..++ .|.+.|+... -.|.-.|....-.++-++..+.+.++ ...
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRy 194 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRY 194 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhH
Confidence 345667777888888888888777666543 2444443221 11222233333344444444444442 233
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcC
Q 010837 419 DVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG 467 (499)
Q Consensus 419 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 467 (499)
.+|..+- +....++.+|-.++-+....-.......|...++.-.-.|
T Consensus 195 K~Y~Gi~--~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa~~~G 241 (412)
T COG5187 195 KVYKGIF--KMMRRNFKEAAILLSDILPTFESSELISYSRAVRYAIFCG 241 (412)
T ss_pred HHHHHHH--HHHHHhhHHHHHHHHHHhccccccccccHHHHHHHHHHhh
Confidence 4554442 3344567777777776665444333556666665544444
No 453
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=44.00 E-value=2.8e+02 Score=29.22 Aligned_cols=45 Identities=7% Similarity=-0.050 Sum_probs=30.1
Q ss_pred hhHHHHHHHHHH-HcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 331 PNQALELFCMMQ-ECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 331 ~~~a~~~~~~m~-~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
.++..+.+++.. ..|+..+......+... ..|++..|+.+++...
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~~--A~GsmRdALsLLdQAi 225 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLARA--AQGSMRDALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHH
Confidence 445555666543 45677777777666654 4688999999887765
No 454
>PF13934 ELYS: Nuclear pore complex assembly
Probab=43.58 E-value=2.2e+02 Score=24.68 Aligned_cols=21 Identities=14% Similarity=0.037 Sum_probs=10.1
Q ss_pred HHHHHcccCcHHHHHHHHHHc
Q 010837 356 ALSACGHAGLVDKGREIFESM 376 (499)
Q Consensus 356 ll~~~~~~~~~~~a~~~~~~~ 376 (499)
++.++...|+.+.|..+++..
T Consensus 114 Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 114 ILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred HHHHHHHCCChhHHHHHHHhc
Confidence 344444445555555555443
No 455
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=43.30 E-value=4.7e+02 Score=28.44 Aligned_cols=43 Identities=7% Similarity=-0.102 Sum_probs=24.0
Q ss_pred ChhHHHHHHHhccCCChHhHHHH--HHHHHhCCCHHHHHHHHHhc
Q 010837 201 KTSYARIVFDMMLEKNVICSTSM--ISGFMSQGFVEDAEEIFRKT 243 (499)
Q Consensus 201 ~~~~A~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~ 243 (499)
.+++|+.-|+.+...-.....-| .-.|.+.|++++-.+.+.-.
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 578 (932)
T PRK13184 534 DFTQALSEFSYLHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLA 578 (932)
T ss_pred HHHHHHHHHHHhcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 46677777777755332222333 33466667777766655443
No 456
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=43.17 E-value=1.2e+02 Score=22.99 Aligned_cols=60 Identities=10% Similarity=0.071 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHHHHh-------cCCCCCCchh----HHHHHHHHhcCChHHHHHHHHH
Q 010837 418 SDVWAALLSSCRLHDDVEMANIAANEIFK-------LNANDRPGAY----VALSNTLAAAGKWDSVTELREK 478 (499)
Q Consensus 418 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~ 478 (499)
..++..|..++...|++++++.-.+..+. .+.+. ...| ..-..++...|+.++|.+.|+.
T Consensus 55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qde-GklWIaaVfsra~Al~~~Gr~~eA~~~fr~ 125 (144)
T PF12968_consen 55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDE-GKLWIAAVFSRAVALEGLGRKEEALKEFRM 125 (144)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTH-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhcccccccc-chhHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 34455555566666666655544443332 11111 1222 2334456677888888777664
No 457
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=42.96 E-value=1.6e+02 Score=25.09 Aligned_cols=80 Identities=16% Similarity=0.294 Sum_probs=57.4
Q ss_pred CHHHHHHHHHhCCCC----------CCHHHHHHHHHHHhhcC---------CHHHHHHHHHHHHhcCCCC-CCchhHHHH
Q 010837 401 SLEQALKFVLEMPEK----------PNSDVWAALLSSCRLHD---------DVEMANIAANEIFKLNAND-RPGAYVALS 460 (499)
Q Consensus 401 ~~~~a~~~~~~~~~~----------~~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~~~~~~~~-~~~~~~~l~ 460 (499)
..+.|+.++..|-.. ....-|..+..+|.+.| +.+...++++..++.|++- -+..|..++
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 356677777766541 34556777777787776 6677778888888887652 357888888
Q ss_pred HHHHhcCChHHHHHHHHHHH
Q 010837 461 NTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 461 ~~~~~~g~~~~A~~~~~~~~ 480 (499)
.--.-.-+.++..+++..++
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 87766778899999888764
No 458
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=42.73 E-value=3.4e+02 Score=26.65 Aligned_cols=210 Identities=10% Similarity=0.026 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHHHcc-cCC-CchhHHHHHHHHHhcCC-hHHHHHHHHhcCCCChhHHHHHHHHHHhC-CChhH-HHHHHH
Q 010837 265 ARKALEVHCQLIKNV-FFE-DVKLGSALVDMYAKCGK-IDDARRVFDHMQQKNVFTWTSMIDGYGKN-GNPNQ-ALELFC 339 (499)
Q Consensus 265 ~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~-a~~~~~ 339 (499)
......+++...+.+ ..+ ....|..+...+...+. .+.|..+..+..+.+...|-.-+....+. .+++- -.+++.
T Consensus 337 I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n 416 (568)
T KOG2396|consen 337 ILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVAVKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFN 416 (568)
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHHHHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHH
Confidence 334455555554433 222 23455555555555544 34455555566666777776655555432 22222 223334
Q ss_pred HHHHcCCCCCHHHHHHHH-HHHcccCcHHHHHHHHHHchHhcCCCCChh-HHHHHHHHHHhcCCHHHHHHHHHhCCC--C
Q 010837 340 MMQECCVQPNYVTFLGAL-SACGHAGLVDKGREIFESMERDYSMKPKME-HYACMVDLLGRAGSLEQALKFVLEMPE--K 415 (499)
Q Consensus 340 ~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~--~ 415 (499)
.....-..+-...++... ..+......+.....+..+. .|+.. .-+.+++-+.+.|-..+|...+..... +
T Consensus 417 ~~r~~~~s~~~~~w~s~~~~dsl~~~~~~~Ii~a~~s~~-----~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp 491 (568)
T KOG2396|consen 417 HLRKQVCSELLISWASASEGDSLQEDTLDLIISALLSVI-----GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPP 491 (568)
T ss_pred HHHHHhcchhHHHHHHHhhccchhHHHHHHHHHHHHHhc-----CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCC
Confidence 444332233333333333 01111111122222222222 34433 346678888899999999999998877 5
Q ss_pred CCHHHHHHHHHHH--hhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHH
Q 010837 416 PNSDVWAALLSSC--RLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMK 480 (499)
Q Consensus 416 ~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 480 (499)
|+...|..++..- ..+-+...+.+.++.+...-... +..|......-...|+.+.+-.++.+..
T Consensus 492 ~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d-~~lw~~y~~~e~~~g~~en~~~~~~ra~ 557 (568)
T KOG2396|consen 492 FSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGAD-SDLWMDYMKEELPLGRPENCGQIYWRAM 557 (568)
T ss_pred ccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCC-hHHHHHHHHhhccCCCcccccHHHHHHH
Confidence 6777888777643 22334788888998887643333 7888888887778898888877776654
No 459
>COG4003 Uncharacterized protein conserved in archaea [Function unknown]
Probab=42.57 E-value=70 Score=22.06 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=26.9
Q ss_pred HHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHH
Q 010837 50 SALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKL 86 (499)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 86 (499)
+++..+.+...-++|+++.+.|.++| ..+....+.|
T Consensus 36 tV~D~L~rCdT~EEAlEii~yleKrG-Ei~~E~A~~L 71 (98)
T COG4003 36 TVIDFLRRCDTEEEALEIINYLEKRG-EITPEMAKAL 71 (98)
T ss_pred hHHHHHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 45666677888899999999999998 5666554443
No 460
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=42.48 E-value=3.1e+02 Score=28.11 Aligned_cols=44 Identities=11% Similarity=0.033 Sum_probs=28.7
Q ss_pred hHHHHHHHH-HHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 332 NQALELFCM-MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 332 ~~a~~~~~~-m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
++..+.+.+ +.+.|+..+......++.. ..|++..+..+++...
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~~--s~GslR~al~lLdq~i 230 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLARA--ARGSMRDALSLTDQAI 230 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHH
Confidence 334444443 3556777777777777763 4588888888877655
No 461
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=42.27 E-value=1.2e+02 Score=21.32 Aligned_cols=40 Identities=15% Similarity=0.179 Sum_probs=30.4
Q ss_pred HhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHH
Q 010837 197 VKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDA 236 (499)
Q Consensus 197 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 236 (499)
....+.+++.++++.++.++..+|..+..++-..|...-|
T Consensus 41 ~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 41 AAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred cCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 4456678888888888888888888888888777765444
No 462
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=41.78 E-value=4.1e+02 Score=27.29 Aligned_cols=184 Identities=13% Similarity=0.093 Sum_probs=84.8
Q ss_pred hhhHHHHHHHHHHHHHccc-CCC-------chhHHHHHHHHHhcCChHHHHHHHH--------hcCCC----ChhHHHH-
Q 010837 262 IETARKALEVHCQLIKNVF-FED-------VKLGSALVDMYAKCGKIDDARRVFD--------HMQQK----NVFTWTS- 320 (499)
Q Consensus 262 ~~~~~~a~~~~~~~~~~~~-~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~----~~~~~~~- 320 (499)
.+++..+......+.+..- .|+ +.++....-.+-..|+.+.|...|. ..... +..++..
T Consensus 374 ~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~L 453 (608)
T PF10345_consen 374 RGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAAL 453 (608)
T ss_pred CcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHHH
Confidence 3666678887777765421 111 2223333333456689999999997 22221 2222222
Q ss_pred -HHHHHH--hCCChhH--HHHHHHHHHHc-CCCCCH--HH-HHHHHHHHcccC--cHHHHHHHHHHchHhc--CCCCC--
Q 010837 321 -MIDGYG--KNGNPNQ--ALELFCMMQEC-CVQPNY--VT-FLGALSACGHAG--LVDKGREIFESMERDY--SMKPK-- 385 (499)
Q Consensus 321 -l~~~~~--~~g~~~~--a~~~~~~m~~~-~~~p~~--~~-~~~ll~~~~~~~--~~~~a~~~~~~~~~~~--~~~p~-- 385 (499)
++-.+. .....++ +.++++.+... .-.|+. .+ +..++.++.... ...++...+....+.. ....+
T Consensus 454 Nl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~l 533 (608)
T PF10345_consen 454 NLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQL 533 (608)
T ss_pred HHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccchH
Confidence 111112 2222223 66677666442 122322 22 333333332211 1123333333333222 11111
Q ss_pred -hhHHHHHHHHHHhcCCHHHHHHHHHhCCC----CC--CHHHHHH-----HHHHHhhcCCHHHHHHHHHHHHh
Q 010837 386 -MEHYACMVDLLGRAGSLEQALKFVLEMPE----KP--NSDVWAA-----LLSSCRLHDDVEMANIAANEIFK 446 (499)
Q Consensus 386 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~--~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~ 446 (499)
..+.+.+...+. .|+..+..+....... .| ....|.. +...+...|+.++|..+..+...
T Consensus 534 ~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 534 LAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 222332333333 6777766555544222 22 3345533 33446778999999988877654
No 463
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=41.57 E-value=1.6e+02 Score=22.62 Aligned_cols=42 Identities=12% Similarity=0.155 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcccCCCc-hhHHHHHHHHHhcCChHHHHHHHH
Q 010837 267 KALEVHCQLIKNVFFEDV-KLGSALVDMYAKCGKIDDARRVFD 308 (499)
Q Consensus 267 ~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~ 308 (499)
...++|..|.++|+-... ..|..-...+-..|++.+|.++|+
T Consensus 81 dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 81 EPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 345567777776654433 244445555666677777777665
No 464
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=41.19 E-value=1.7e+02 Score=26.53 Aligned_cols=58 Identities=9% Similarity=0.011 Sum_probs=42.7
Q ss_pred HHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHH
Q 010837 268 ALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYG 326 (499)
Q Consensus 268 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~ 326 (499)
-.++++.+.+.++.|.-..+..+.-.+.+.=.+.++..+++.+..... -|..++..||
T Consensus 262 D~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~-rfd~Ll~iCc 319 (370)
T KOG4567|consen 262 DEELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQ-RFDFLLYICC 319 (370)
T ss_pred hHHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcChh-hhHHHHHHHH
Confidence 356788888888999888888887778888888888888888764322 2555555554
No 465
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=40.99 E-value=1.9e+02 Score=25.31 Aligned_cols=83 Identities=10% Similarity=0.011 Sum_probs=50.3
Q ss_pred HHhcCChHHHHHHHHhcC----------CCCh-----------hHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHH
Q 010837 294 YAKCGKIDDARRVFDHMQ----------QKNV-----------FTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVT 352 (499)
Q Consensus 294 ~~~~g~~~~a~~~~~~~~----------~~~~-----------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~ 352 (499)
+.+.|++.+|...|.++. +|.. ..+..+-+++...|++-++++.-.+.... .+-|...
T Consensus 188 lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~-~~~nvKA 266 (329)
T KOG0545|consen 188 LFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH-HPGNVKA 266 (329)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc-CCchHHH
Confidence 667788888887776543 2221 12233334455567777777777766664 2445556
Q ss_pred HHHHHHHHcccCcHHHHHHHHHHch
Q 010837 353 FLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 353 ~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
|-.-..+....-+.++|..-|..+.
T Consensus 267 ~frRakAhaa~Wn~~eA~~D~~~vL 291 (329)
T KOG0545|consen 267 YFRRAKAHAAVWNEAEAKADLQKVL 291 (329)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 6555666666666777777666666
No 466
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=40.63 E-value=1.8e+02 Score=22.98 Aligned_cols=40 Identities=15% Similarity=0.046 Sum_probs=17.1
Q ss_pred HHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 010837 321 MIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSAC 360 (499)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 360 (499)
++..+...++.-.|.++++++.+.+...+..|.-..+..+
T Consensus 26 vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l 65 (145)
T COG0735 26 VLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLL 65 (145)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHH
Confidence 3334444444444555555555444444444333333333
No 467
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=40.56 E-value=1.5e+02 Score=22.01 Aligned_cols=75 Identities=8% Similarity=0.049 Sum_probs=31.1
Q ss_pred chhHHHHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcC
Q 010837 167 RNLGRMVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTV 244 (499)
Q Consensus 167 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 244 (499)
.++|..+.+.+...+- ....+--+.+..+...|++++|...=.....||...|-++.. .+.|--+++...+.++.
T Consensus 22 H~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 22 HQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 3444444444444331 122222233334555566666633333333345554444322 35555555555555444
No 468
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=40.33 E-value=2.8e+02 Score=24.95 Aligned_cols=78 Identities=18% Similarity=0.027 Sum_probs=39.5
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcC------------
Q 010837 404 QALKFVLEMPEKPNSDVWAALLSSCRL----HDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG------------ 467 (499)
Q Consensus 404 ~a~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------ 467 (499)
.|...+.++-..-+......+...|.. ..+.++|...|+..-+.+. . .....+. .+...|
T Consensus 173 ~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~-~--~a~~~~~-~~~~~g~g~~~~~~~~~~ 248 (292)
T COG0790 173 KALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD-G--AACYNLG-LMYLNGEGVKKAAFLTAA 248 (292)
T ss_pred hHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-H--HHHHHHH-HHHhcCCCchhhhhcccc
Confidence 455555555543344444444433322 3366667667766666665 2 2333333 333333
Q ss_pred ---ChHHHHHHHHHHHhCCCc
Q 010837 468 ---KWDSVTELREKMKLRGVL 485 (499)
Q Consensus 468 ---~~~~A~~~~~~~~~~~~~ 485 (499)
+...|...+......+..
T Consensus 249 ~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 249 KEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred cCCCHHHHHHHHHHHHHcCCh
Confidence 556666666666555544
No 469
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=40.16 E-value=1.6e+02 Score=24.75 Aligned_cols=60 Identities=23% Similarity=0.204 Sum_probs=27.9
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHH
Q 010837 420 VWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKM 479 (499)
Q Consensus 420 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 479 (499)
..+.++..|...||++.|-++|.-++....-+-...|..=+..+.+.+.-....+.++.|
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 344555555566666666666655554332221233444444444444433333444443
No 470
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=39.47 E-value=2.3e+02 Score=23.75 Aligned_cols=56 Identities=11% Similarity=0.065 Sum_probs=38.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhcCCC--------------CCCchhHHHHHHHHhcCChHHHHHHHH
Q 010837 422 AALLSSCRLHDDVEMANIAANEIFKLNAN--------------DRPGAYVALSNTLAAAGKWDSVTELRE 477 (499)
Q Consensus 422 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 477 (499)
-+++..|.+..++.+...+++.+.+..+. +.-...+..+..+.+.|..|.|..+++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 34555666666777777777776653322 123456677888889999999998887
No 471
>PLN03025 replication factor C subunit; Provisional
Probab=39.35 E-value=3.1e+02 Score=25.22 Aligned_cols=125 Identities=10% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHH---------------hCCCCCCHHHHHHHHHHHhhc
Q 010837 367 DKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVL---------------EMPEKPNSDVWAALLSSCRLH 431 (499)
Q Consensus 367 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~---------------~~~~~~~~~~~~~l~~~~~~~ 431 (499)
++....+....++.|+..+......++.... |+...++..++ ++...+.......++.++..
T Consensus 161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~--gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~~- 237 (319)
T PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFTAD--GDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCLK- 237 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHHHc-
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcC-ChHHHHHHHHHHHhCCCccCcccccccc
Q 010837 432 DDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAG-KWDSVTELREKMKLRGVLKDTGCSWVGT 495 (499)
Q Consensus 432 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 495 (499)
++.++|...+.+++..|..+ ......+...+.... +...-.+++..+.+.......|.+.+..
T Consensus 238 ~~~~~a~~~l~~ll~~g~~~-~~Il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 301 (319)
T PLN03025 238 GKFDDACDGLKQLYDLGYSP-TDIITTLFRVVKNYDMPEFLKLEYLREIGFAHMRICDGVGSLLQ 301 (319)
T ss_pred CCHHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHCCCCHHHH
No 472
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=39.18 E-value=2.9e+02 Score=24.84 Aligned_cols=129 Identities=18% Similarity=0.187 Sum_probs=61.6
Q ss_pred hHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCc-----hhHHHHHHHHHhcCChHHHHHHHHhcCC--------CChh
Q 010837 250 VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDV-----KLGSALVDMYAKCGKIDDARRVFDHMQQ--------KNVF 316 (499)
Q Consensus 250 ~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~ 316 (499)
...+++..+....+..+..+.+....++....-.. ..-..++..+.+.|.+.+|..+...+.. ++..
T Consensus 86 iirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li 165 (421)
T COG5159 86 IIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLI 165 (421)
T ss_pred HHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCcccee
Confidence 34455555544445555544444444332221111 1123478889999999999887665431 2222
Q ss_pred HHHHH-HHHHHhCCChhHHHHHHHHHHH----cCCCCCHHHHHHHHHH--HcccCcHHHHHHHHHHchH
Q 010837 317 TWTSM-IDGYGKNGNPNQALELFCMMQE----CCVQPNYVTFLGALSA--CGHAGLVDKGREIFESMER 378 (499)
Q Consensus 317 ~~~~l-~~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~ 378 (499)
+...+ -.+|-.-.+..++..-+...+. .-++|-...-.-++.+ +|...++..|..+|-+..+
T Consensus 166 ~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 166 TVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred ehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh
Confidence 11111 1223333344444333333221 1234433333333333 3455677778777777664
No 473
>PF13934 ELYS: Nuclear pore complex assembly
Probab=39.10 E-value=2.6e+02 Score=24.23 Aligned_cols=108 Identities=13% Similarity=0.113 Sum_probs=67.1
Q ss_pred CCCCCHHHHHHHHHH--HcccCcHHHHHHHHHHchHhcCCCCChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-HHHH
Q 010837 345 CVQPNYVTFLGALSA--CGHAGLVDKGREIFESMERDYSMKPKMEHYACMVDLLGRAGSLEQALKFVLEMPEKPN-SDVW 421 (499)
Q Consensus 345 ~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~ 421 (499)
++++.... ++++ +...+++++|.+.+..- .+.|+- -..++.++...|+.+.|+.+++...-... ....
T Consensus 74 ~ip~~~~~---~~~g~W~LD~~~~~~A~~~L~~p----s~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~ 144 (226)
T PF13934_consen 74 GIPPKYIK---FIQGFWLLDHGDFEEALELLSHP----SLIPWF--PDKILQALLRRGDPKLALRYLRAVGPPLSSPEAL 144 (226)
T ss_pred CCCHHHHH---HHHHHHHhChHhHHHHHHHhCCC----CCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHH
Confidence 45544433 3444 34558888888887433 333332 23477777888999999999998876432 3333
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHh
Q 010837 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAA 465 (499)
Q Consensus 422 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 465 (499)
..++.. ..++.+.+|..+.+...+... ...+..++..+..
T Consensus 145 ~~~~~~-La~~~v~EAf~~~R~~~~~~~---~~l~e~l~~~~~~ 184 (226)
T PF13934_consen 145 TLYFVA-LANGLVTEAFSFQRSYPDELR---RRLFEQLLEHCLE 184 (226)
T ss_pred HHHHHH-HHcCCHHHHHHHHHhCchhhh---HHHHHHHHHHHHH
Confidence 333334 667899999877766554221 3467777777763
No 474
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=39.09 E-value=3.6e+02 Score=25.86 Aligned_cols=95 Identities=12% Similarity=0.125 Sum_probs=62.2
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHH-------cCCCC-----CHHHHHHHHHHHcccCcHHHHHHHHHHchHhc-----CC
Q 010837 320 SMIDGYGKNGNPNQALELFCMMQE-------CCVQP-----NYVTFLGALSACGHAGLVDKGREIFESMERDY-----SM 382 (499)
Q Consensus 320 ~l~~~~~~~g~~~~a~~~~~~m~~-------~~~~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~ 382 (499)
.++.++....++.+.++..+.... .|..| .-.+...|++.++-.|++..|.++++.+.-.. .+
T Consensus 80 nvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V 159 (404)
T PF10255_consen 80 NVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKV 159 (404)
T ss_pred HHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccC
Confidence 345566666666665555544211 11111 12345667888999999999999998775221 11
Q ss_pred CC-ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 383 KP-KMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 383 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
.+ .+.+|.-+.-+|.-.+++.+|.+.|..+..
T Consensus 160 ~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 160 PACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred cchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 345677778888999999999999987664
No 475
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=39.08 E-value=1.9e+02 Score=29.34 Aligned_cols=76 Identities=9% Similarity=-0.009 Sum_probs=39.4
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHcccCcHHH--HHHHHHHchHhcCCCCChhHHHHHHHH
Q 010837 320 SMIDGYGKNGNPNQALELFCMMQECC--VQPNYVTFLGALSACGHAGLVDK--GREIFESMERDYSMKPKMEHYACMVDL 395 (499)
Q Consensus 320 ~l~~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~--a~~~~~~~~~~~~~~p~~~~~~~l~~~ 395 (499)
+++.+|..+|++-.+..+++.+...+ -+.-...|+..+....+.|.++- ...-..+..+...+.-|..+|..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 56677777777777777777665532 22223456666666666665432 111111222222334455556555544
No 476
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=38.94 E-value=2.9e+02 Score=25.01 Aligned_cols=113 Identities=12% Similarity=0.137 Sum_probs=56.1
Q ss_pred HHHHHHhcCChHHHHHHHHhcCCCChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHH
Q 010837 290 LVDMYAKCGKIDDARRVFDHMQQKNVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKG 369 (499)
Q Consensus 290 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 369 (499)
++..+.+.+++......+..+. ....-...+..+...|++..|++++.+..+. .. +...|.++=..- .++++-
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~--~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~-l~-~l~~~~c~~~L~---~~L~e~ 176 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK--TVQQTQSRLQELLEEGDYPGALDLIEECQQL-LE-ELKGYSCVRHLS---SQLQET 176 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-HH-hcccchHHHHHh---HHHHHH
Confidence 4445555555555555555542 3333445566777888888888888777653 10 101111111100 111221
Q ss_pred HHHHHHch----HhcCCCCChhHHHHHHHHHHhcCCHHHHHHHH
Q 010837 370 REIFESME----RDYSMKPKMEHYACMVDLLGRAGSLEQALKFV 409 (499)
Q Consensus 370 ~~~~~~~~----~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 409 (499)
......+. .+.-..-|+..|..+..+|.-.|+...+.+-+
T Consensus 177 ~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl 220 (291)
T PF10475_consen 177 LELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKL 220 (291)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 11111111 11111346677888888888888766655433
No 477
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=38.63 E-value=4.4e+02 Score=26.77 Aligned_cols=218 Identities=10% Similarity=0.007 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHcccCCCchhHHHHHHHHHhcCChHHHHHHHHhcCCCC-hhHHHHHHHHHHhCCChhHHHHHHHHHHHc
Q 010837 266 RKALEVHCQLIKNVFFEDVKLGSALVDMYAKCGKIDDARRVFDHMQQKN-VFTWTSMIDGYGKNGNPNQALELFCMMQEC 344 (499)
Q Consensus 266 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (499)
+...++.+.....--.+....+..|+. ..+.=+.+.-.++++++.. . ...+..++++....|......-+.+.+...
T Consensus 292 ~~l~~L~~~~~~~~~~~~~~~f~~lv~-~lR~~~~e~l~~l~~~~~~-~~~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~ 369 (574)
T smart00638 292 EVLKHLVQDIASDVQEPAAAKFLRLVR-LLRTLSEEQLEQLWRQLYE-KKKKARRIFLDAVAQAGTPPALKFIKQWIKNK 369 (574)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHH-HHHhCCHHHHHHHHHHHHh-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcC
Q ss_pred CCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCCh-------hHHHHHHHHHHhcCCH------HHHHHHHHh
Q 010837 345 CVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKM-------EHYACMVDLLGRAGSL------EQALKFVLE 411 (499)
Q Consensus 345 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~~~~------~~a~~~~~~ 411 (499)
.+.+....-........-..--.+..+.+.++.+.....+.. ..+.+++.-+|..... ++..+.+.+
T Consensus 370 ~~~~~ea~~~~~~~~~~~~~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~ 449 (574)
T smart00638 370 KITPLEAAQLLAVLPHTARYPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHE 449 (574)
T ss_pred CCCHHHHHHHHHHHHHhhhcCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Q ss_pred CCC----CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhc--CChHHHHHHHHHHHhCCCc
Q 010837 412 MPE----KPNSDVWAALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAA--GKWDSVTELREKMKLRGVL 485 (499)
Q Consensus 412 ~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~ 485 (499)
... +.+..--...++++...|.......+..-+......+ ...-...+.++.+. ...+++..++-.+....-.
T Consensus 450 ~l~~~~~~~~~~~~~~~LkaLGN~g~~~~i~~l~~~l~~~~~~~-~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n~~e 528 (574)
T smart00638 450 LLQQAVSKGDEEEIQLYLKALGNAGHPSSIKVLEPYLEGAEPLS-TFIRLAAILALRNLAKRDPRKVQEVLLPIYLNRAE 528 (574)
T ss_pred HHHHHHhcCCchheeeHHHhhhccCChhHHHHHHHhcCCCCCCC-HHHHHHHHHHHHHHHHhCchHHHHHHHHHHcCCCC
Q ss_pred c
Q 010837 486 K 486 (499)
Q Consensus 486 ~ 486 (499)
+
T Consensus 529 ~ 529 (574)
T smart00638 529 P 529 (574)
T ss_pred C
No 478
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=38.51 E-value=3.4e+02 Score=25.53 Aligned_cols=30 Identities=13% Similarity=0.094 Sum_probs=20.3
Q ss_pred CCchhHHHHHHHHHHhCCChhHHHHHHHhc
Q 010837 183 KADDVLYTALVDSYVKGGKTSYARIVFDMM 212 (499)
Q Consensus 183 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 212 (499)
+--..++-.+...+...|+.+.|.+++++.
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRA 66 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERA 66 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444556666777777788877777776664
No 479
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=38.43 E-value=4.8e+02 Score=27.14 Aligned_cols=119 Identities=17% Similarity=0.121 Sum_probs=64.0
Q ss_pred HcccCcHHHHHHHHHHchHhcCCCCChh--HHHHHHHHHHhcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCCHH
Q 010837 360 CGHAGLVDKGREIFESMERDYSMKPKME--HYACMVDLLGRAGSLEQALKFVLEMPEKPN--SDVWAALLSSCRLHDDVE 435 (499)
Q Consensus 360 ~~~~~~~~~a~~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~ 435 (499)
+..-|+-++|..+.+++..+ ..|-.. -.-.+..+|+-.|+-....+++.-....+| +.-+..+.-++.-..+.+
T Consensus 511 L~~ygrqe~Ad~lI~el~~d--kdpilR~~Gm~t~alAy~GTgnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~ 588 (929)
T KOG2062|consen 511 LVVYGRQEDADPLIKELLRD--KDPILRYGGMYTLALAYVGTGNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE 588 (929)
T ss_pred HHHhhhhhhhHHHHHHHhcC--CchhhhhhhHHHHHHHHhccCchhhHHHhhcccccccchHHHHHHHHHheeeEecChh
Confidence 33445556677777777632 133111 122345566777777666666666555333 333444444555666777
Q ss_pred HHHHHHHHHHh-cCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHh
Q 010837 436 MANIAANEIFK-LNANDRPGAYVALSNTLAAAGKWDSVTELREKMKL 481 (499)
Q Consensus 436 ~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 481 (499)
....+.+-+.+ .++.....+-..|+-+|+-.|. .+|..+++-|..
T Consensus 589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~-~eAi~lLepl~~ 634 (929)
T KOG2062|consen 589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGL-KEAINLLEPLTS 634 (929)
T ss_pred hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCc-HHHHHHHhhhhc
Confidence 66666655544 2333323344455556666665 467777766654
No 480
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=38.40 E-value=3.4e+02 Score=27.02 Aligned_cols=45 Identities=4% Similarity=0.014 Sum_probs=29.3
Q ss_pred hhHHHHHHHH-HHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 331 PNQALELFCM-MQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 331 ~~~a~~~~~~-m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
.++....+.. +.+.|+..+......++... .|++..+...++.+.
T Consensus 177 ~~el~~~L~~i~~~egi~i~~~Al~~ia~~s--~GdlR~aln~Lekl~ 222 (504)
T PRK14963 177 EEEIAGKLRRLLEAEGREAEPEALQLVARLA--DGAMRDAESLLERLL 222 (504)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence 3444445544 34567777777776666543 488888888887765
No 481
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=38.37 E-value=1.1e+02 Score=23.96 Aligned_cols=66 Identities=18% Similarity=0.141 Sum_probs=39.0
Q ss_pred CCCHHHHHHHHHHHcccC---cHHHHHHHHHHchHhcCCCC--ChhHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 010837 347 QPNYVTFLGALSACGHAG---LVDKGREIFESMERDYSMKP--KMEHYACMVDLLGRAGSLEQALKFVLEMPE 414 (499)
Q Consensus 347 ~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 414 (499)
.++..+--.+..++.++. ++.+.+.+++.+.+ .-.| ......-|.-++.+.+++++++++.+...+
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~--~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLK--SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhh--hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 344444444444555443 45677778877773 1223 223333455667788888888888877665
No 482
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=38.26 E-value=1.3e+02 Score=20.76 Aligned_cols=13 Identities=15% Similarity=0.337 Sum_probs=5.5
Q ss_pred cCCChhHHHHHhc
Q 010837 92 KCGALKYAGQMFD 104 (499)
Q Consensus 92 ~~~~~~~A~~~~~ 104 (499)
+.|+++-...+++
T Consensus 6 ~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 6 QNGNLEILKFLLE 18 (89)
T ss_dssp HTTTHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 3344444444444
No 483
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.19 E-value=1.5e+02 Score=21.65 Aligned_cols=50 Identities=18% Similarity=0.170 Sum_probs=27.6
Q ss_pred HHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccCcc
Q 010837 438 NIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKDTG 489 (499)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 489 (499)
++.++++...+....+.....|...|.+.|+.+.|.+-|+. +..+.|.++
T Consensus 57 e~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFet--EKalFPES~ 106 (121)
T COG4259 57 EKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFET--EKALFPESG 106 (121)
T ss_pred HHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHH--hhhhCccch
Confidence 33444444433322256666677777777777777766664 233444443
No 484
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=37.93 E-value=3.6e+02 Score=25.61 Aligned_cols=54 Identities=6% Similarity=-0.089 Sum_probs=35.6
Q ss_pred HHHHhCCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHHc--ccCcHHHHHHHHHHch
Q 010837 323 DGYGKNGNPNQALELFCMMQECCVQPNYV--TFLGALSACG--HAGLVDKGREIFESME 377 (499)
Q Consensus 323 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~ 377 (499)
..+.+.+++..|.++++++... ++++.. .+..+..+|. ..-++++|.+.++...
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3445778888888888888876 555554 3444444443 3456777888777766
No 485
>PHA02875 ankyrin repeat protein; Provisional
Probab=37.91 E-value=3.7e+02 Score=25.72 Aligned_cols=206 Identities=10% Similarity=0.020 Sum_probs=105.9
Q ss_pred HHHHHhCCCHHHHHHHHHhcCCCChh---hHHHHHHHHhcChhhHHHHHHHHHHHHHcccCCCch--hHHHHHHHHHhcC
Q 010837 224 ISGFMSQGFVEDAEEIFRKTVEKDIV---VYNAMIEGYSISIETARKALEVHCQLIKNVFFEDVK--LGSALVDMYAKCG 298 (499)
Q Consensus 224 ~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g 298 (499)
+...+..|+.+-+..+++....++.. .++.+..+ +.. +.. ++.+.+.+.|..|+.. .....+...++.|
T Consensus 6 L~~A~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A-~~~-~~~----~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g 79 (413)
T PHA02875 6 LCDAILFGELDIARRLLDIGINPNFEIYDGISPIKLA-MKF-RDS----EAIKLLMKHGAIPDVKYPDIESELHDAVEEG 79 (413)
T ss_pred HHHHHHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHH-HHc-CCH----HHHHHHHhCCCCccccCCCcccHHHHHHHCC
Confidence 34456778888888888776655432 23333333 333 343 3555666677665532 1223455667889
Q ss_pred ChHHHHHHHHhcCCC----ChhHHHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHH---HHHHHHHHHcccCcHHHHHH
Q 010837 299 KIDDARRVFDHMQQK----NVFTWTSMIDGYGKNGNPNQALELFCMMQECCVQPNYV---TFLGALSACGHAGLVDKGRE 371 (499)
Q Consensus 299 ~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~a~~ 371 (499)
+.+.+..+++.-... +....+.+ ...+..|+. ++++.+.+.|..|+.. ..+. +...+..|+.+-+..
T Consensus 80 ~~~~v~~Ll~~~~~~~~~~~~~g~tpL-~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tp-Lh~A~~~~~~~~v~~ 153 (413)
T PHA02875 80 DVKAVEELLDLGKFADDVFYKDGMTPL-HLATILKKL----DIMKLLIARGADPDIPNTDKFSP-LHLAVMMGDIKGIEL 153 (413)
T ss_pred CHHHHHHHHHcCCcccccccCCCCCHH-HHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHH
Confidence 998888888754321 11122223 233455664 4555556667665432 2223 333445677766555
Q ss_pred HHHHchHhcCCCC---ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCH---HHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 010837 372 IFESMERDYSMKP---KMEHYACMVDLLGRAGSLEQALKFVLEMPEKPNS---DVWAALLSSCRLHDDVEMANIAANEIF 445 (499)
Q Consensus 372 ~~~~~~~~~~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~ 445 (499)
+++. |..+ +..-.+.|. ..+..|+.+-+.-+++.-.. ++. .....++...+..|+.+ +.+.++
T Consensus 154 Ll~~-----g~~~~~~d~~g~TpL~-~A~~~g~~eiv~~Ll~~ga~-~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll 222 (413)
T PHA02875 154 LIDH-----KACLDIEDCCGCTPLI-IAMAKGDIAICKMLLDSGAN-IDYFGKNGCVAALCYAIENNKID----IVRLFI 222 (413)
T ss_pred HHhc-----CCCCCCCCCCCCCHHH-HHHHcCCHHHHHHHHhCCCC-CCcCCCCCCchHHHHHHHcCCHH----HHHHHH
Confidence 5443 3332 222223333 33456777766666655443 221 11123444345566665 445556
Q ss_pred hcCCCCC
Q 010837 446 KLNANDR 452 (499)
Q Consensus 446 ~~~~~~~ 452 (499)
+.|.+++
T Consensus 223 ~~gad~n 229 (413)
T PHA02875 223 KRGADCN 229 (413)
T ss_pred HCCcCcc
Confidence 6676653
No 486
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=37.83 E-value=1.6e+02 Score=23.99 Aligned_cols=43 Identities=19% Similarity=0.108 Sum_probs=20.2
Q ss_pred HHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccC
Q 010837 322 IDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAG 364 (499)
Q Consensus 322 ~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 364 (499)
+..+...++.-.|.++++.+.+.+...+..|...-|..+...|
T Consensus 32 L~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~G 74 (169)
T PRK11639 32 LRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQG 74 (169)
T ss_pred HHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCC
Confidence 3333333444455555555555554444444444444444433
No 487
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=37.62 E-value=3.2e+02 Score=24.94 Aligned_cols=57 Identities=11% Similarity=-0.024 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 318 WTSMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 318 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
...+.....+.|+.+.-..+++.... ..+...-..++.+.+...+.+...++++.+.
T Consensus 172 r~~v~~~~~~~g~~~~~~~l~~~~~~---~~~~~~k~~~l~aLa~~~d~~~~~~~l~~~l 228 (324)
T PF11838_consen 172 RWAVYCAGVRNGDEEEWDFLWELYKN---STSPEEKRRLLSALACSPDPELLKRLLDLLL 228 (324)
T ss_dssp HHHHHHHHTTS--HHHHHHHHHHHHT---TSTHHHHHHHHHHHTT-S-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHhhHHHHHHHHhc---cCCHHHHHHHHHhhhccCCHHHHHHHHHHHc
Confidence 33444444455554433333333332 2344445555555555556555555665555
No 488
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=37.25 E-value=1.5e+02 Score=20.89 Aligned_cols=63 Identities=16% Similarity=0.224 Sum_probs=45.2
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCChhhH
Q 010837 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQVEES 130 (499)
Q Consensus 64 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 130 (499)
...+++.+.+.|+- +...... .-+...+.+.|.++++.++.++..+|..+..++-..|...-|
T Consensus 18 ~~~v~~~L~~~~Vl-t~~~~e~---I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 18 PKYLWDHLLSRGVF-TPDMIEE---IQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHHHhcCCC-CHHHHHH---HHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 44677888888753 3333222 223556788999999999999999999999999887765433
No 489
>PRK10941 hypothetical protein; Provisional
Probab=37.24 E-value=3.1e+02 Score=24.57 Aligned_cols=67 Identities=6% Similarity=-0.091 Sum_probs=31.1
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcHHHHHHHHHHchHhcCCCCChh
Q 010837 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLVDKGREIFESMERDYSMKPKME 387 (499)
Q Consensus 320 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~p~~~ 387 (499)
.+-.+|.+.++++.|+.+.+.+..-. +.+..-+.--.-.|.+.|.+..|..-++...+...-.|+..
T Consensus 186 nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~ 252 (269)
T PRK10941 186 TLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISE 252 (269)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHH
Confidence 34445555555555555555555421 22222333333345555555555555555544433333333
No 490
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.99 E-value=64 Score=33.60 Aligned_cols=26 Identities=12% Similarity=0.013 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhC
Q 010837 387 EHYACMVDLLGRAGSLEQALKFVLEM 412 (499)
Q Consensus 387 ~~~~~l~~~~~~~~~~~~a~~~~~~~ 412 (499)
.+|..|.....+.|+.+-|+..|++.
T Consensus 673 d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 673 DVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 34444444444445544444444443
No 491
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=36.85 E-value=3.7e+02 Score=25.42 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=14.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhcC
Q 010837 289 ALVDMYAKCGKIDDARRVFDHMQ 311 (499)
Q Consensus 289 ~l~~~~~~~g~~~~a~~~~~~~~ 311 (499)
.|...+-..|++++|..++.+..
T Consensus 136 ~L~~ike~~Gdi~~Aa~il~el~ 158 (439)
T KOG1498|consen 136 MLAKIKEEQGDIAEAADILCELQ 158 (439)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcc
Confidence 35555666777777777766553
No 492
>PRK09857 putative transposase; Provisional
Probab=36.66 E-value=2e+02 Score=26.09 Aligned_cols=65 Identities=12% Similarity=0.104 Sum_probs=44.2
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhcCCCCCCchhHHHHHHHHhcCChHHHHHHHHHHHhCCCccC
Q 010837 422 AALLSSCRLHDDVEMANIAANEIFKLNANDRPGAYVALSNTLAAAGKWDSVTELREKMKLRGVLKD 487 (499)
Q Consensus 422 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 487 (499)
..++.-..+.++.++..++++.+.+..+.. .....+++.-+.+.|.-+++.++..+|...|+..+
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~-~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERSPKH-KESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhCccc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 344444455666666667776666654443 45566777777777877788888888888887755
No 493
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.61 E-value=3.8e+02 Score=25.50 Aligned_cols=90 Identities=18% Similarity=0.161 Sum_probs=57.3
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHhcCC------CChhHHHHHHHHHHhCCChhHHHHHHHHHHHcC---------CCCCH
Q 010837 286 LGSALVDMYAKCGKIDDARRVFDHMQQ------KNVFTWTSMIDGYGKNGNPNQALELFCMMQECC---------VQPNY 350 (499)
Q Consensus 286 ~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~---------~~p~~ 350 (499)
.+.-+.+.|..+|+++.|.+.|.+..+ .-+..|-.+|..-.-.|+|..+.....+....- +.+-.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl 231 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL 231 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence 345577789999999999999998653 234566667777777788888877777765531 22233
Q ss_pred HHHHHHHHHHcccCcHHHHHHHHHHch
Q 010837 351 VTFLGALSACGHAGLVDKGREIFESME 377 (499)
Q Consensus 351 ~~~~~ll~~~~~~~~~~~a~~~~~~~~ 377 (499)
..+..+...+ .+++..|.+.|=...
T Consensus 232 ~C~agLa~L~--lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 232 KCAAGLANLL--LKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHhCC
Confidence 3344444333 346666666554443
No 494
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=36.42 E-value=1e+02 Score=22.98 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=31.8
Q ss_pred HHHHHHHhCCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcccCcH
Q 010837 320 SMIDGYGKNGNPNQALELFCMMQECCVQPNYVTFLGALSACGHAGLV 366 (499)
Q Consensus 320 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 366 (499)
.++..+...+..-.|.++++.+.+.+...+..|....++.+...|-+
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 34555555566677888888888777667777766666666666643
No 495
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=36.10 E-value=1.6e+02 Score=21.00 Aligned_cols=59 Identities=12% Similarity=0.174 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChhHHHHHhccCCCCChHHHHHHHHHHHhCCC
Q 010837 64 GLKIHAHITKTGVKPNTNISIKLLILHLKCGALKYAGQMFDELPQRTLSAYNYMIAGYLKNGQ 126 (499)
Q Consensus 64 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 126 (499)
...+++.+.+.|+ .+...+..+ .+..-+.+.+.++++.++.+++.+|..+..++-..+.
T Consensus 22 ~~~v~~~L~~~gv-lt~~~~~~I---~~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 22 LDELLIHLLQKDI-LTDSMAESI---MAKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred HHHHHHHHHHcCC-CCHHHHHHH---HcCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 4467788888875 333333332 2345678999999999999999999999999976554
No 496
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=35.98 E-value=3.4e+02 Score=25.11 Aligned_cols=138 Identities=11% Similarity=0.076 Sum_probs=0.0
Q ss_pred HHHHcccCcHHHHHHHHHHchHhcCCCCC--------hhHHHHHHHHHHhcCCHHHHHHHHHhCCC-------CCCHHHH
Q 010837 357 LSACGHAGLVDKGREIFESMERDYSMKPK--------MEHYACMVDLLGRAGSLEQALKFVLEMPE-------KPNSDVW 421 (499)
Q Consensus 357 l~~~~~~~~~~~a~~~~~~~~~~~~~~p~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~ 421 (499)
++.....++.+++..++..+..+.....+ ..+...+.+.|.+.|+.++-..+...... .......
T Consensus 11 ~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~KakaaKlv 90 (411)
T KOG1463|consen 11 AQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAKAAKLV 90 (411)
T ss_pred HHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHHHHHHH
Q ss_pred HHHHHHHhhc-CCHHHHHHHHHHHHhcCCCCCCchhH------HHHHHHHhcCChHHHHHHHHHHHhCCCccCccccccc
Q 010837 422 AALLSSCRLH-DDVEMANIAANEIFKLNANDRPGAYV------ALSNTLAAAGKWDSVTELREKMKLRGVLKDTGCSWVG 494 (499)
Q Consensus 422 ~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 494 (499)
..++..+... +..+.-+.++.++++-.... ..++. .++..|...+++.+|..+...+.+.=-+.|.....++
T Consensus 91 R~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~e-kRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLve 169 (411)
T KOG1463|consen 91 RSLVDMFLKIDDGTGDQIELCTECIEWAKRE-KRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVE 169 (411)
T ss_pred HHHHHHHccCCCCcchHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceee
Q ss_pred c
Q 010837 495 T 495 (499)
Q Consensus 495 ~ 495 (499)
+
T Consensus 170 v 170 (411)
T KOG1463|consen 170 V 170 (411)
T ss_pred e
No 497
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=35.57 E-value=1.6e+02 Score=20.93 Aligned_cols=50 Identities=24% Similarity=0.292 Sum_probs=30.4
Q ss_pred ChhHHHHHHHHHHhcCCHHHHHHHHHhCCCC----CCHHHHHHHHHHHhhcCCH
Q 010837 385 KMEHYACMVDLLGRAGSLEQALKFVLEMPEK----PNSDVWAALLSSCRLHDDV 434 (499)
Q Consensus 385 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~ 434 (499)
|...-..+...+...|++++|++.+-++..+ .+...=..|+..+...|..
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 5666777788888888888888887766652 2334445555555555543
No 498
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=34.96 E-value=1.1e+02 Score=22.87 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=35.5
Q ss_pred HHHHhhhCCCChhhHHHHHHHHHHhCCCCChHHHHHHHHHHHcCCChh
Q 010837 50 SALQHYINSDTPFYGLKIHAHITKTGVKPNTNISIKLLILHLKCGALK 97 (499)
Q Consensus 50 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 97 (499)
.++..+...+..-.|.++++.+.+.+...+..|.-..++.+.+.|-+.
T Consensus 5 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli~ 52 (116)
T cd07153 5 AILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLVR 52 (116)
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCEE
Confidence 355556666677788899999988877777777777778888877554
No 499
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=34.67 E-value=2.2e+02 Score=28.00 Aligned_cols=74 Identities=14% Similarity=0.153 Sum_probs=55.5
Q ss_pred CCchhHHHHHHHHHHhCCChhHHHHHHHhccCCChHhHHHHHHHHHhCCCHHHHHHHHHhcCCCChhhHHHHHHHH
Q 010837 183 KADDVLYTALVDSYVKGGKTSYARIVFDMMLEKNVICSTSMISGFMSQGFVEDAEEIFRKTVEKDIVVYNAMIEGY 258 (499)
Q Consensus 183 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ll~~~ 258 (499)
+.+...|-..+.-|...+++++|.++.+-..+. ..|.++........+..-++..|....+-|.+.|-.-|...
T Consensus 570 pisV~py~~iL~e~~sssKWeqavRLCrfv~eq--TMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK~l 643 (737)
T KOG1524|consen 570 PISVNPYPEILHEYLSSSKWEQAVRLCRFVQEQ--TMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIKAL 643 (737)
T ss_pred eeeccccHHHHHHHhccchHHHHHHHHHhccch--HHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHhcc
Confidence 345556777888899999999999999877643 46777777777788887777777777777777776666554
No 500
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=32.95 E-value=1.8e+02 Score=20.59 Aligned_cols=42 Identities=10% Similarity=0.006 Sum_probs=31.1
Q ss_pred HHHHHHHHcCCCCchhHHHHHHHHHHhCCChhHHHHHHHhcc
Q 010837 172 MVHAQILKCDVKADDVLYTALVDSYVKGGKTSYARIVFDMML 213 (499)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 213 (499)
++|+.....|+..|..+|..+++...-.=-.+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 677777777888888888888877766666677777777763
Done!